LOCUS       DACVWI010000001        58547 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.001, whole genome shotgun sequence.
ACCESSION   DACVWI010000001 DACVWI010000000
VERSION     DACVWI010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 58547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 58547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..58547
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.001"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            39..494
                     /locus_tag="JBH85_00005"
     CDS             39..494
                     /locus_tag="JBH85_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular multiplication protein IcmW"
                     /protein_id="HAU0944574.1"
                     /translation="MPDLSHEASAKYWFEYLDPMIYRVITFMESVENWTLDGNPELEE
                     AMKQLGQELDDIEKIDLGLLAEEDKFIRIVGNIKSGRGLRLLQAIDTVHPGSASRVLI
                     HAEETSLSSSDPAGFFLKRNIVFERLRLLSRVFCQYRLKLVLRALEGDE"
     gene            494..1894
                     /locus_tag="JBH85_00010"
     CDS             494..1894
                     /locus_tag="JBH85_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmX"
                     /protein_id="HAU0944575.1"
                     /translation="MKVLPKLALANLVCFTTLSVFAQPADPSGQQTSTNTSNLVTYLT
                     NLGKYLGYDITQSSKAPNPPYSQLFNSNVVQLVQNYAYNTFLGAIPVDAMSQSLMNFV
                     TDKVQGNSLINNLANTTFKYQNFSAPSSGADGKITANGLIDQSTASAQTPTTPGIFSA
                     PQITTSGTYLNDPVSQAVFNILGTPDYSFCMDNEQKNWLPNCNLMYQNLVMQNVIGTL
                     PPAQTSGSTPAFYSYKYNQPLISQLNSNSLIAPLLMDTSASQSGQDSGLTAKSQAQQA
                     LNFIRYASAQVTPPSLPKLSAYSELWNQATAKPNSAGYNEVQQKQAAATLSSYFNNLR
                     VYAAQTSVGVSNLYYILSKRLPQNMSADQSNANITSQALNEFNMATRRLFDPTASNTP
                     GQPNQQWIKQINDASPATVQKEIAILLAEINYQMYLDRQIQERILLTNSIMLLQNLKA
                     AQPTADFSSQGSPSEQ"
     gene            complement(1901..3532)
                     /locus_tag="JBH85_00015"
     CDS             complement(1901..3532)
                     /locus_tag="JBH85_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein LphB"
                     /protein_id="HAU0944576.1"
                     /translation="MRALLLPRRKTILVLLIAIYCAYDLMVALYTAWDFTTDDAYISW
                     YYARQLASGKGLLWHATLPPVEGYSNFLWIIIAASVIKLQLPLVSSMKVISCCSLGLS
                     LLFLYRLARLFCSPLLSILPVFLFSHYTGVAWWTVSGLETLFYCALSLALIWQCTLAF
                     GYHTVNDSHWINRFSLDSTNHWIITNVLLLLLSLTRFEGIIWIIPLAVFIGCQYLRDH
                     RELVFKDHKRLFLWVSITFVCFTLPYLVYFIWRLIYFGHWIPNSYRCKALAYGQFLAV
                     DLDYFLFITPLLILSVPYLLSAKKDCRHSLLWLPSVLYSLLLWKANPVVTYGLRLFLS
                     PFALFSILPVLGLNQFIQYFKPFRWDPEYPIAGLMLFITWFFVPGNDLNHLSKSVIEY
                     NERAQNRMTIADLLNRKAKKGDSVLLDDCGIIPFFSREDIRFIDAQCLNNSDLTQKPF
                     KNDLSLYADYLNSKVRPDWVITNYYPMESHGDYLTDLLDAKNFFKNYHLASTLSSGFY
                     LNQNQPQGKKMIDFVYQIFKRAYNKPLELESQEPK"
     gene            3892..6435
                     /locus_tag="JBH85_00020"
     CDS             3892..6435
                     /locus_tag="JBH85_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HAU0944577.1"
                     /translation="MSKPYFFYVSGMNCTSCSNAIESFLRNSNLIKINTFHADMSTPD
                     PKKIVISLSEERENEHESNWKIIKKLIDDTGFTCENHEFPPIKDEKPTLLPEKKQTAA
                     QQEASTLSTIFSSAKKIITSHWLLGGLGCVTGASLMILTMAIGGLPLAVMIPLAGLSI
                     LLTIALGAQSYYEAWKKLVQSRTLTMDTLFSISTVSVLIVSLASFFVPWLPMMFEAGL
                     LIYGFRHIGIAIEDTIKDKISSTKFQDRTPQKVRLYRHSDFKKTRIEEIQPNDIIQVK
                     PGELIPLDSVCEQDTLIYPTIITGAVIPKQFRSGEKILAGMRLANDAKPLTLRVLKTA
                     KESYLARLDESIAQSVLEKAPIEIKTGQLLSYFIPSIIALSILSGIIVGLIATPALAI
                     QCAISVLVSACPCTLGLIIPLAVKTGIHKGAEHGVQFKNSRVLQLAEQIDVVIFDLNG
                     TLTTGVPVVKEYAVLNDADLSSEHFLSICNVLEGQSKHPFGKAIQSFTQGINKQKFNI
                     ANLDHSNHSGISAEINGIQYTIGSKTLMQEIGISTSSLENQMNLVAGDSLVFLARNKQ
                     LLGYLVITDPLRKDAKQTVDALIKMGKEVHLCTGADEKTAYRYAQALGIKKVHANCVA
                     TTINTEDRSKPVYIKSLQNQGLKVAMIGDAANDANALAASDFGIAVLSQDSDEITQQH
                     ASAIIQSGTILPIANAFAISKQTVNNINQNLLISLGYNLTTVLIAGGLLVALGFALNP
                     AIGVALMVTQACFVLLNVYRFKEQPLQHLQDKVQEKPEPAPSSYEAMKKHSPNFHTAP
                     EINHKPAIQSGKQPTNKNKSPSFWSDYFPELFEEEKDTSTEHLMNNKIG"
     gene            6686..7216
                     /locus_tag="JBH85_00025"
     CDS             6686..7216
                     /locus_tag="JBH85_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2692 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944578.1"
                     /translation="MPTTFEDKSSKVPSLKSLAANVIQKTNANLFFRLHSLETPPEIK
                     KGFIDKELEALTHELTEDYQTKVEARNEKIEECSSNLSSNECFVKCSAFTLTTLMAGV
                     HVGIYYILKAAAVDPSTQIAYISSIPATICFSMCVGVCLNRQITKCLSSCFTPSVPDK
                     ITVDLDELGRQSHVSP"
     gene            complement(7289..8179)
                     /locus_tag="JBH85_00030"
     CDS             complement(7289..8179)
                     /locus_tag="JBH85_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0944579.1"
                     /translation="MKSFQFLENCVGELYNLQEALGKSFWKKSRMDNESLLAILNNWS
                     ATNYAKGNYILREISSKFLAKISIDSNDYLLDAGCGDGSFTQMLANLVPDGYVLGLDR
                     SKTMIDYANKHCRSINVRFDIGDIQEPIIYGPFDNILSFWCLHWTDLEKSLSNLYHVL
                     KPGGKICAIFSSGKQSTLFEVLNSLQFQNLYPDVAKNVVQSKMMRENYSVQCRRALDN
                     LPFKSISFVVEHCQVELPDLGLFENFIHGAPLFKDLPGKMYQDIVNGMVQFFDEYCKK
                     KYGGKWVYETTPYFLTITRE"
     gene            complement(8213..9070)
                     /locus_tag="JBH85_00035"
     CDS             complement(8213..9070)
                     /locus_tag="JBH85_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HAU0944580.1"
                     /translation="MILIFEEHRMQLSSEQCDFFFTNGYLVINNFFSESVCDLLKQRI
                     ETLLENNQAEIPKTIFSTQTNEHAKKQYFLDSGDKIHYFFEPGAFDEAGDWLRPFNQS
                     INKIGHALHELDPVFRQYSRDDRIKKIAHQLGLKTLGLVQSMYIFKQPGIGAEVLCHQ
                     DSTYIFGEDSDALGFWFAIEDATLENGCLEVIPSPCTTPLKQRMFRRENEIYFENFDS
                     SPWPEENSVPLPVKKGALIILHGRVPHKSQANFSNQSRHAYTLHLVDISLPYPEKNWL
                     QWPNGIPCL"
     gene            complement(9159..10220)
                     /locus_tag="JBH85_00040"
     CDS             complement(9159..10220)
                     /locus_tag="JBH85_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HAU0944581.1"
                     /translation="MALVLYCRMIKSVCVIRLSALGDVLMLVPLIRTLQNKLPNAQLT
                     WIISKPAFYLVEGMEGVEFIVIDKPKTLADYWRFRKQMLPRQFDVLLAPQASFRTNWL
                     IPFIKAKRKVGYDSHRANDGHRLFIRESISPGLEHTLEGFLKFAEPLGVTEKIIHWDL
                     PITKADYEWAQNHLPEQERPILVVNPAASKPERSWLAERYIEVLKQAQVKWDVKVVLT
                     GGPGDHDKSLAEEIAKEIPVVNLVGKTKPKQLLAVISKAKAVLCPDTGPSHMAAAVGT
                     PVVALHAVTNPSISGPYTFQHLVVNRYSQAIQTVLGVSPEKSVWGTQVHGYEAMKLIT
                     VDDVMEKLTEIFSGLMNNT"
     gene            complement(10189..10383)
                     /locus_tag="JBH85_00045"
     CDS             complement(10189..10383)
                     /locus_tag="JBH85_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018575987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HAU0944582.1"
                     /translation="MRKTTKEPASAKKNYVVHRHQLPLSCPTDEMELWNAHPKVYLPI
                     EKTGVEVCPYCGSRFVLQND"
     gene            complement(10406..11371)
                     /gene="miaA"
                     /locus_tag="JBH85_00050"
     CDS             complement(10406..11371)
                     /gene="miaA"
                     /locus_tag="JBH85_00050"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HAU0944583.1"
                     /translation="MMIVGCYCMNKLVFCLMGPTASGKTGLACELLTHFPFEIISVDS
                     AMIYRDMNIGTAKPSIHELQRAPHYLIDIKDPVESYSAAQFCTDALSLCAEIIKRGNI
                     PLLVGGTMMYFNALQKGLATLPEADEAVRKRLEEEALSQGWDFLYQKLSQLDPVTAAR
                     IHAHDTQRIQRALEVYYLTGSTLSTYLTGPHERPDYYFVNLALFPEQRSWLHERIAQR
                     FDAMLSEGFIEEVQQLQAKWPIQINLPSMRCVGYRQILQHLAGHYDYETMREKGIAAT
                     RQLAKRQLTWLRHWEGALFYDSQNVGFNTDIIAKIREILDNTVSN"
     gene            complement(11340..13070)
                     /gene="mutL"
                     /locus_tag="JBH85_00055"
     CDS             complement(11340..13070)
                     /gene="mutL"
                     /locus_tag="JBH85_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HAU0944584.1"
                     /translation="MVLRIHQLSPAIANQIAAGEVIERPASVVKELLENSLDAGASVI
                     GVDVNYGGLLQITVSDNGSGIVGDDLPLAIAAHATSKIRTLDDLYSIDSMGFRGEALA
                     SIASVAKVTIISKPEEQDNAMMLRVEGENRTLSPCARNIGTTIDVSDLFYNAPVRKRF
                     LKNEKLEFQAIEMVVKRFALSAPQIALTLKHNKKLIFSLPPALSEQAKAIRMGRILGN
                     TFMREAIFLDVEHSGMRLYGWISNHRLQRSQNDRQWIYVNQRMVKDKLLQHAVKQAYD
                     GLLHAGRFPICLLYFTLPASEVDVNVHPTKHEVRFQQPRLVHDFFTSQLTKALQSTLD
                     HSETMEYAYAASSCNEQQNTVSEPSHICNDRESYEGARALSPSWSDNSLSSSITCKGY
                     KKTSSVYHPETEFQWVILNERFILVLIKQQPYLVDIVTLFQEWIEKQLMQKALPLESR
                     PLLISIRYPLPNQWIHKLDHLKHELTRVGIQIEYPNADDLLIRSIPLNAPYLDVRRFF
                     NVLCELDFFDTEQLIALISRSQMFDPKQLTVEERIEMNQLLLELSLQEEKCNTCKALT
                     IDDCRMLLHE"
     gene            complement(13061..14491)
                     /locus_tag="JBH85_00060"
     CDS             complement(13061..14491)
                     /locus_tag="JBH85_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HAU0944585.1"
                     /translation="MMMRAWVLSLLLYLPSSFAVFSAQLKNITVSQQPTMTSLYLSIQ
                     GSFTHKLFTLSQPNRVVLDLSDTQLAVNISQLGLINSLIQQVRSGSPSKNTLRLVMDV
                     KQPVKVRSSSWKPKGELNGIRIDLVNDTPLVINNRRQLSSPVKTIKAPVQQTQSKISS
                     QPSEQRITVHKTPVQVPHNPSKKPLRDVVVVLDAGHGGKDPGARGPRRSNEKDVVLAI
                     TLKLKRLIDRQPGMRAVLTRSGDYYVGLRQRLDIARKYNGDVFISIHADAFNNPHSNG
                     ASVFALSQRGATSEAARWLAEKENYSELGGVNLGELDDSNGVVRSVLIDLSQTATINA
                     GLEMGGKVLGQLDNFTNLHNNKVEQARFVVLKSPDIPSILVETGFISNPREERNLTNP
                     AYQERLSQAIFQGLKNYFWDHPPHGTRIEAMISPNFHIVKKGETLPAIAARYRVSVNA
                     LQSINRLQARARLMPGQKLVIPGTWS"
     gene            complement(14488..14970)
                     /gene="tsaE"
                     /locus_tag="JBH85_00065"
     CDS             complement(14488..14970)
                     /gene="tsaE"
                     /locus_tag="JBH85_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HAU0944586.1"
                     /translation="MAIEDNDNFITLDLVSEQESKRFAEKLAFCISAPLVITLSGDIG
                     AGKTTIIRAMLKSLGVISAIKSPTFSLVESYNCGQFHIHHFDLYRIHQEEELEYLGFR
                     DYFSNQSVCCIEWPEHGGKTLPPVDIQFNLIIKGTGRLIQIAALSVAGKRILACLAGE
                     "
     gene            complement(15096..16577)
                     /locus_tag="JBH85_00070"
     CDS             complement(15096..16577)
                     /locus_tag="JBH85_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HAU0944587.1"
                     /translation="MNKLENALYRCDQIKACEQQAATLYQKDENALMALAGAEAFSFL
                     QKLYPHVRHIAVFCGAGNNAGDGYVLARLAHEQGFSVTVYQCKSIEDLPSAARNAARQ
                     ALASGVHCQSADEPLDGDAELIVDALLGIGLQGAVYGVIANAIHQINASGLPVLSIDI
                     PSGLNADTGLVENICVNATATITFIGLKTGMYTLDGPDYCGVIHCAHLNLEACTTKLT
                     RFASLLRDSTLPLPLAARKKNSHKGDYGHVLVIGGGPGMPGAVSLAAKAALKTGAGVV
                     TVATWPDYAKSALPLIPEAMIWGVKTAGELMPLLAKATVCVIGPGLGDSDWAKTLFLT
                     AITTQLPMIIDASALRLLSQHPQMDDNWILTPHPGEAASLLSCTARDVQMDRYHAASA
                     IQKQYGGVVVLKGAGTVIQTAEKNIFVCPQGNPGMATAGMGDILSGIIAAFCAQGFTL
                     SDAAKLGVWVHAVAGDKVAEKSGEVGVLASDLLDEIPSILNCI"
     gene            complement(16705..17100)
                     /locus_tag="JBH85_00075"
     CDS             complement(16705..17100)
                     /locus_tag="JBH85_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HAU0944588.1"
                     /translation="MAMTSNKPYLIRAFYDWIVDNDLTPYILVDASNPNVQVPREHVQ
                     HDRIVLNISPSATRGLLLENDRIVFTARFSGQTEQIFVAPNAVLEIYAKENGRGIAFS
                     VDEDDEPPPKTSSSSESATKNKPSLKLVK"
     gene            complement(17103..17723)
                     /gene="sspA"
                     /locus_tag="JBH85_00080"
     CDS             complement(17103..17723)
                     /gene="sspA"
                     /locus_tag="JBH85_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HAU0944589.1"
                     /translation="MAIVAKRTIMSLFSDVDDVYSHQVRIVLAEKGVNVEILAVKQDE
                     PGADLLSINPYGTVPTLIDRELVLYEARIIMEYLDERFPHPPLLPVYPVARAEARKMM
                     HRIEQDWYYLMNAILREESVEQARANLLESLTSLDPVFADKPYFLSDEFSLLDCALAP
                     LLWRLPKLGLEIAPNFKGIISYMQRVFKRDSFQTSLTDAERQIRAA"
     gene            complement(17974..18714)
                     /locus_tag="JBH85_00085"
     CDS             complement(17974..18714)
                     /locus_tag="JBH85_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HAU0944590.1"
                     /translation="MMKIKVLLVAALAFLMSNAAFTENLTMDYVPVDINDKESLQRGA
                     KMFMNYCSGCHSLKYMRYNRMAQDLGLTTFDGQIAEDLLKNNLIFTQANIYDPIQIAM
                     SPEDAKQWFGMVPPDLSLSARDRGPVWIYNYLKSFYSDPSRPFGANNLLMPDVAMPNV
                     LEPLIGKVILVKDKNSHANSLLVVKRGEMFEGQFDSALRDLVNFLVYVGEPAKLIRYK
                     LGVFVLLFFCIFLIAAYSLKKAYWKQLK"
     gene            complement(18711..19925)
                     /locus_tag="JBH85_00090"
     CDS             complement(18711..19925)
                     /locus_tag="JBH85_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HAU0944591.1"
                     /translation="MNGLVNWLDERFPLVSTWKAHFSNYYAPKNFNFLYFFGSLALIV
                     LVNQIITGLWLTMFYTPNAEQAFSSVEFIMRDINFGWLLRYMHSTGASAFFVVIYLHM
                     FRGLLYGSYQKPRELVWLLGMFLYLLLMAEAFFGYLLPWGQMSYWGAEVITSLFGAIP
                     YIGKGLAVWLRGDYSVANPTLQRFFALHVIGIPILMIILVFLHIVALHKVGSNNPEGI
                     DIKKALDKDGKPLDGIPFHPYYTVKDFVGIIVFSILFFAVVFFAPEMGGYFLEHANFV
                     PANPMVTPDHIAPVWYLAPFYAILRAIPDKLIGVVCMAAAILLLFFLPWLDKSNVRSV
                     RYKGMYSRISITLFAFSFLLLGYLGTTPVTPVRLFLARIAAVIYFSYFILMPIYSRFE
                     KTRPVPTRIGEK"
     gene            complement(19936..20562)
                     /gene="petA"
                     /locus_tag="JBH85_00095"
     CDS             complement(19936..20562)
                     /gene="petA"
                     /locus_tag="JBH85_00095"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HAU0944592.1"
                     /translation="MSEMTDLNQDVSNHNQDEQLDEERRRFLLHTTCVLGGVGAACAL
                     TPFITSWLPSSKAQAAGAPVKVDVSRMEPGEQAIIEWRGKPVWIIKRSKDMLNQLQKE
                     DESQLRDPDSLVDQQPEYAQNKFRSINPEFLVLIGICTHLGCSPKYKPSLGELGPDWP
                     GGFFCPCHGSMFDLSGRVFKGVPAPINLEVPPYHFLDEHTIVIGEDAK"
     gene            complement(20727..21158)
                     /gene="rpsI"
                     /locus_tag="JBH85_00100"
     CDS             complement(20727..21158)
                     /gene="rpsI"
                     /locus_tag="JBH85_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HAU0944593.1"
                     /translation="MAEMKQYYGTGRRKSSIARVFLRPGKGDIKVNDRTLQEYFCRET
                     SCMIVMQPLETVDLLNKFDVYITVTGGGISGQAGAVRLGIARALVAYDEDGLAEGAEP
                     SPDSFRRKLRARGLLTRDSRRVERKKVGLHKARRATQYSKR"
     gene            complement(21164..21598)
                     /gene="rplM"
                     /locus_tag="JBH85_00105"
     CDS             complement(21164..21598)
                     /gene="rplM"
                     /locus_tag="JBH85_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096712.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HAU0944594.1"
                     /translation="MKTFSAKGNEVKRDWFVVDASEKVLGRLATEIARRLRGKHKAEY
                     TPHVDTGDYIIVTNAEKVIVTGRKFKNKMYHHHTGFPGGIKSASFEKLQDKNPTKIIE
                     LAVKGMLPKNPLGREMYRKLKVYAGSEHPHTAQQPKQLEIEE"
     gene            complement(21937..22251)
                     /locus_tag="JBH85_00110"
     CDS             complement(21937..22251)
                     /locus_tag="JBH85_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HAU0944595.1"
                     /translation="MSHYTKHVFICTNQKAPGKQCCANSGGEEFFDFMKSKLLEFDLH
                     GPGKIRVSKSGCLGRCGSGPCIVIYPEGVWYTYSSFEDIEQIIKYHLIDGKIVAPLLL
                     DR"
     gene            complement(22256..22555)
                     /locus_tag="JBH85_00115"
     CDS             complement(22256..22555)
                     /locus_tag="JBH85_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HAU0944596.1"
                     /translation="MIVNALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENG
                     QHVKLSGFGNFTLRDKPQRPGRNPKTGEEIPVEARRVVTFKPGLKLKTKIEKIGK"
     gene            complement(22552..24933)
                     /gene="pheT"
                     /locus_tag="JBH85_00120"
     CDS             complement(22552..24933)
                     /gene="pheT"
                     /locus_tag="JBH85_00120"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HAU0944597.1"
                     /translation="MKVSKLWLREWVNFSLTEQELAEQLTMAGLEVDAVNPVAGQFTH
                     VIVAEVLDTKPHPDADKLTLCEVNINKDKPLKIVCGAANVRPGLRVALAMIGAHLPGG
                     LQIKESKLRGELSQGMLCSATELGLAEHSEGIMELSDEAPIGMDLREYLALDDHVFDI
                     DLTPNRADCFSILGVAREVAVLNKLPLIEQPIVTVPPAIDDGLRVNLIHSEACPRYCG
                     RIIRNLNLEAKTPLWMAERLRRGGIRTLHPVVDVMNYVMLELGQPMHAFDLAKINGEI
                     NVRYGVSGEQLELLDGQEVVLNDNVLVIADKEKPLAMAGIMGGANSAVQEQTQHVFLE
                     SAYFNPVTIAGVARKYGLFSDSSQRFERGVDPCLQSKALERATELILSISGGEAGPVI
                     ESFDKKFLPGTVSFLFDTTKVKKLTGLSIPLNEMKNLLEGLGVVIIKETNHFFEVTIP
                     SHRVDLQQDADLVEEIIRLYGYDKLQAQPMQTSVQAGLISAKEKIATHVSSWFSAKGY
                     HETISYSFVDPELQEALYPQKEFMELLNPISSELSQMRAGMWPGLIASMIYNSHRQQT
                     AVKFFEIGVVFDLDGGQLKERSCIAGLLMGEQGNLNWSESARLFDFYDLKGDLQSLFA
                     SLKLDDVEFIQSSHHALHPGQSAQIVINGKHSGWIGVLHPRLSDAFDLDQDVVLFELN
                     LESLINPTIPLYKPISKYPQIRRDLSFLVDRQISAMQIERVIRNTVKEDWLKSFDVFD
                     VYMGKGIPEDKKSIAVAMTLQDDTRTLVDAEINLTISAIIKKLENEFSILLRE"
     gene            complement(25191..26219)
                     /gene="pheS"
                     /locus_tag="JBH85_00125"
     CDS             complement(25191..26219)
                     /gene="pheS"
                     /locus_tag="JBH85_00125"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HAU0944598.1"
                     /translation="MGRTMLVLINTIQEQASEAIKQATDIVALEQIRVDFLGKKGKLT
                     ELLKGLANLSAEEKPKVGQLVNQAKQGISALIETKMIELKEKQLLAKLAAEQIDVTLP
                     GRNHSTGSLHPVTQVKHRINDYFSRLGFDIVEGPEIETEFYNFEALNIPGHHPARAMH
                     DTFYFGDGRLLRTHTSPVQIRTMEQRKPPFRLIAPGRVYRCDSDVTHTPMFHQVEGLL
                     IDKQATLAGLKGLLQDFFAYFFGRELALRFRPSYFPFTEPSAEVDIECTQCNGKGCRS
                     CKFTGWLEVLGCGMVHPNVLIAVNIDPNEYHGWAFGMGMDRLAMLYYGIDDLRMLFEN
                     DLTFLRQF"
     gene            complement(26344..26703)
                     /gene="rplT"
                     /locus_tag="JBH85_00130"
     CDS             complement(26344..26703)
                     /gene="rplT"
                     /locus_tag="JBH85_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HAU0944599.1"
                     /translation="MPRVKRGVTAKARHKKILDQAKGYYGARSRTYRVAKQAVIKAGQ
                     YAYRDRRQKKRQFRALWITRINAQARECGLSYSRLIDGLKKASIELDRKILADMAVHD
                     KVAFAAIAEQAKAALAG"
     gene            complement(26719..26919)
                     /gene="rpmI"
                     /locus_tag="JBH85_00135"
     CDS             complement(26719..26919)
                     /gene="rpmI"
                     /locus_tag="JBH85_00135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019234612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HAU0944600.1"
                     /translation="MPKLKSHRGAAKRFRKTASGAIKRRGAYRNHILTKKSTKQKRHL
                     RVEAGTLKPCDARLAERMLHGS"
     gene            complement(26940..27476)
                     /gene="infC"
                     /locus_tag="JBH85_00140"
     CDS             complement(26940..27476)
                     /gene="infC"
                     /locus_tag="JBH85_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HAU0944601.1"
                     /translation="MSAPTKRENDRARINEQITVPEVRLIDVDGNQAGIVSTREALRA
                     AEESGLDLVEISPTAKPPVCRIMDYGKFLFELSKKQAEARKKQKQIQVKELKFRPTTE
                     DGDYQVKLRNLIRFLNHGDKVKITLRFRGREMAHQELGMKILERLQADTADVAIVEQH
                     AKREGRQLLMVLSPKKTK"
     gene            complement(27501..29441)
                     /gene="thrS"
                     /locus_tag="JBH85_00145"
     CDS             complement(27501..29441)
                     /gene="thrS"
                     /locus_tag="JBH85_00145"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HAU0944602.1"
                     /translation="MKDGKTDKIMPNVKLPDGNVKHFEAPLTIYDVAHHISPGLAKAA
                     IAGRVDGVLVDTSYLIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVT
                     IGPVIEDGFYYDFAFERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKDL
                     GEEYKAKIIADIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLTKVAGAYWRGDS
                     NNEMLQRIYGTAWADKKSLEEYLFRLEEAEKRDHRKLGKALDLFHFQDIAPGMVFWHP
                     KGWTIYQELEHYMRNRLVDFGYQEIRTPQLVDRSLWEKSGHWANFRDEMFVTETENRH
                     YAVKPMSCPCHVQIYNHGLKSYRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDA
                     HIFCTEDQIQSEVAMMLELVQSVYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALK
                     LAMQGRNIEWVDAPGEGAFYGPKIECSLSDCLGRIWQCGTIQVDFSMPARLEASYVAE
                     DGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAIVLTISEKQNEYAEKV
                     RKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTRDGIDL
                     GVMTIDTICDTLTQEIIRKGSI"
     gene            complement(29543..29617)
                     /locus_tag="JBH85_00150"
     tRNA            complement(29543..29617)
                     /locus_tag="JBH85_00150"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29583..29585),aa:Val,seq:gac)
     gene            29927..30214
                     /locus_tag="JBH85_00155"
     CDS             29927..30214
                     /locus_tag="JBH85_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF167 domain-containing protein"
                     /protein_id="HAU0944603.1"
                     /translation="MWFKIIHSHVEIAIYAKPNAKKSKLMAISDDRLHIALHAKPQEG
                     EANNELLFFISQFFKIPKTQIELIKGKSSRHKLIRLPLSESVFCFLNNPKI"
     gene            30537..31022
                     /locus_tag="JBH85_00160"
     CDS             30537..31022
                     /locus_tag="JBH85_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0944604.1"
                     /translation="MEKVNLTKQFAYRLRDAMIAAGHNSQRSPSGVCIHKLAEMTGYS
                     LQICRKYLRGEVIPDPVKLIEIASKLNVSPGWLLFGETHNDPGTSKEHITISKSLLHH
                     IFTKAACLYNRELVEDDVSDFLMDLINDISLINATEEQSKKIIDLAISSVSHFRHSQR
                     T"
     gene            31037..31250
                     /locus_tag="JBH85_00165"
                     /pseudo
     CDS             31037..31250
                     /locus_tag="JBH85_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961773.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(31732..33294)
                     /gene="wipA"
                     /locus_tag="JBH85_00170"
     CDS             complement(31732..33294)
                     /gene="wipA"
                     /locus_tag="JBH85_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector WipA"
                     /protein_id="HAU0944605.1"
                     /translation="MPKRLINKNIDIYNYPNEFEDNLGSISLGDLHGNAIKLIHFLFR
                     HKIIKFKTEIINFHEAYQQFVTIYEQYDDMVQEYLEIRTLLQLIQIKITNAQQRILDI
                     EQKLSLATDHQKEFSQSLLQLKKPIEANLQMAEKSKAGLEEKLSGLKTRLPSCIERFN
                     KFMTQIEINDIKTLIRLLGDEVADRGSCDYFTLRILDFLYQNQIAIKIILSNHGYEFI
                     HAYEKLVVGQPFKPKGYIGDIQIKSFWGLQLLLEQSVITEEELRSLVERAYKPTLKII
                     DYSLSEDGITLYSHAPIRFDSIRMAASQLGVTYNDSTKEALAETIDQLNAQLQIYMKN
                     NMLHLLFENNEINDPTNMTDEERNASPLIYLVWNRWNESKEVENARPGKYNGYFVTYV
                     HGHDPFQSPLTYVYNLDTLCGKYSRVGEEEQINKAFQFLTENRHTNVDKTASESLLRN
                     ISRYKVLDSDEYTLKHKIPKTSLELATDILDCKIKESLIKLSLLGKPKAVSGSLSVDQ
                     NISIPNQASLGK"
     gene            33575..34726
                     /locus_tag="JBH85_00175"
     CDS             33575..34726
                     /locus_tag="JBH85_00175"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAU0944606.1"
                     /translation="MRLLSFKKSKIVSIGTELEFQIIDCSSLSLVSRSKELMRALKDM
                     RYRDQIKPEITQSMIEINSSIHQSAKEMYDELLELQKILVETAASIDIAFCGGGTHPF
                     QQWTMQKIFPSKRFKKKFNQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPH
                     FIAISASSPFYLGINTNYCSSRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIE
                     NMKDFYWDIRPKPELGTIEIRVCDTPLTLRKSILITAYIQALALYLLEEKSVQLSHDL
                     YYVYNYNRFQASRHGLEGELTVTDKDRPIPIMDDILETIKKIEQYINGLGNSEYIEEL
                     YSDVINKQNDSVLINKIYKQDGSFSKLVAAQCELWLSDSKDRKWMTQPS"
     gene            34705..35736
                     /locus_tag="JBH85_00180"
     CDS             34705..35736
                     /locus_tag="JBH85_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HAU0944607.1"
                     /translation="MDDTTFLSTKEKILEIKPLMESAFGNILGYQELENMLAICTLVP
                     FSNNQILFHQGDRIKGIYIIIKGTVDLIARTLGKGITKIETCLASDFLGETSFLLNEP
                     SATSAVAKDNVTCLFIPSAYFELMPAFSPEAKYKIMKAIGYQACGRLKQLHDKIIDFI
                     SHSDMQSLSFLGRVIQTFTQPKIHTLDESGVDKDQIYKKTLFNSFTQDETDELLEHAI
                     PLTANKNCVLIHENETIPVCYIVIYGAVQSNVIQNSKIAKLSVIGPDSLFASTACFLS
                     DTKFSITFITCESATLLKISEAELQYFQKNKPMIWYKLFNLICGSIISLARSLKKLDV
                     RLNIEKYNQ"
     gene            35743..36660
                     /locus_tag="JBH85_00185"
     CDS             35743..36660
                     /locus_tag="JBH85_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HAU0944608.1"
                     /translation="MCRILSYLGQPTVVEELLYKPDNSFIKQSYHPKYLPYLLNLAGF
                     GMAAWDRNSINPLQAYVYKTSKLPFYDENLHNLAEKIAPHCLLAHLRGVSYHDKQVVT
                     DQNVHPFLYPVTSIALAHNGMLHNFETMRYDLLKYVKTEYRKYIKGTTDSEWIYAVFL
                     SQLENPKGHFDASEIINAVIATLKILKTVRQQNNIVINSPVNLFLTNGDFIAATRFCL
                     DYGWKPKDATQSTHFTYHSLWYTYGERYGFYENEYKMKGGTINSSIIIASEPLTENTT
                     TWLEVPEYTLIFANQVDGEIKITSQDINI"
     gene            complement(36788..37864)
                     /locus_tag="JBH85_00190"
     CDS             complement(36788..37864)
                     /locus_tag="JBH85_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HAU0944609.1"
                     /translation="MTCRRFIMVNSDLILSPYQLNDKITLKNRVIMAPMTRNMANDDF
                     SPTRQMADYYARRADAGLIITEGTIISPDGQGYSNAPGIFTQTHIDGWKMVTDAVHER
                     GGKIFLQIWHVGRVSHPIFLHGNLPISASETMMTGKVRRADDLYYGKSRAATLEEINE
                     LIQNYALAARRAMIAGFDGIEIHGANGYLIDQFLHYHTNQRHDQYGQYPENMGRFALE
                     VVKACINEIGGQSVGLRLSPGAYLNEIVGDERDAMVFRYVLEELNHYGIAYVHTGNFD
                     DGIQFKELGFKTMTEFMRAHFKGTLIASGSYTLHQARKDIQNKKYDLIALGRPFIANP
                     DLMNRIKWNADFLPYENRMLDTLF"
     gene            complement(37915..38214)
                     /locus_tag="JBH85_00195"
     CDS             complement(37915..38214)
                     /locus_tag="JBH85_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0944610.1"
                     /translation="MNVINILKALSNEKRLQIIRWLKEPDKHFSSSHCDVSKDGVCVG
                     LIEKKSGLSQSTVSQYLSQLQQAGLIFTERRGQWTYCKANASLINEFINELKVMI"
     gene            complement(38467..38811)
                     /locus_tag="JBH85_00200"
     CDS             complement(38467..38811)
                     /locus_tag="JBH85_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944611.1"
                     /translation="MNNTIDNQSQEELTHFDANTPQSIIQLDRKLREMKSEVDMKIND
                     PSSYNGDDKEVYFQKLSKLSEEINEAIKSLDALVKMVDIQDEEFKKDFYESDVMKEFN
                     ESVMKSFDKLPE"
     gene            38928..39557
                     /locus_tag="JBH85_00205"
     CDS             38928..39557
                     /locus_tag="JBH85_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HAU0944612.1"
                     /translation="MLLHYLFIVGICVEAITGALAAGRKKMDFFGVLLIASITALGGG
                     TVRDTLFNTYPLTWVAHPEYLLYTSVCAFLTIFIAHSLVRIMKVFLILDALGLSTFVI
                     IGTQKVLAHGMPPSVAVISGMITGICGGMLRDILCNDIPLVLRKELYAVIALAGALLF
                     ITLDYFHIPHNLNIIITLLCIFTARLLAIFFHIEIPIFDYSESIKRRKK"
     gene            complement(39765..40259)
                     /locus_tag="JBH85_00210"
     CDS             complement(39765..40259)
                     /locus_tag="JBH85_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAU0944613.1"
                     /translation="MVLISTSMGDIHIKLDTENTPLTAENFLNYVRKGFYNDTIFHRV
                     IDGFMIQGGGLNTNMEQKTTASPIQNEAKGAKPNKRGTIAMARTMDPHSATAQFFINV
                     ADNGFLNYSGDHPQGYGYCVFGEVVEGMDVVDAIAKVKTGQRNGHADVPVEEISIIEV
                     RELA"
     gene            complement(40286..41452)
                     /gene="tgt"
                     /locus_tag="JBH85_00215"
     CDS             complement(40286..41452)
                     /gene="tgt"
                     /locus_tag="JBH85_00215"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HAU0944614.1"
                     /translation="MPFLRMNTFSCEVLYQHSGTKARVTRVVTPHGEFITPVFMPVGT
                     RAGVNNMMPSELSAAGTQIILGGNTYHMLCAPGMKVIENAGGMHRFMGWHGPMLTDSG
                     GFQVFSLSKNKEICSIDESGAHFKLPGSKGIIHMTPEMSLETQKIIGADIIMAFDQCT
                     PDSCSKDEVSQIMLRTHRWLKQSIDYHQQYPNSRYGYKQALFGIVQGGVFQDLRRESA
                     DFVSAMNTDGIAIGGETVGFDMDTTVEVIRWVYEYLPGNKPRYTMGVGMSPQDLLDVV
                     AEGIDMFDCVAPTRNARHGALYCGKLVREGNWLKFQSEHENGRIQIKKSCFADDLAPV
                     MESCSCYTCLNYSRSYLHHLSKQKANLFTALASIHNVHVLHDVCNHMRHLIINS"
     gene            complement(41499..41990)
                     /locus_tag="JBH85_00220"
     CDS             complement(41499..41990)
                     /locus_tag="JBH85_00220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016357035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HAU0944615.1"
                     /translation="MKKLTYRKIQSFQVIITLLVIFASFYLEYAVGLQPCPLCLMQRI
                     CVFILLGLMGLSLGTLKKAHIVSLMQFLVACAGLYFSLRQLWLQSLPSDQAPACMPGL
                     DVLIQYFPWQTVAKALFWGAGDCAEVTWTMFGISMPGWAAMYFLFMAIMGLFLFFRTR
                     TIN"
     gene            complement(41987..42451)
                     /locus_tag="JBH85_00225"
     CDS             complement(41987..42451)
                     /locus_tag="JBH85_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
                     /protein_id="HAU0944616.1"
                     /translation="MIFKLTIRGRINMRLNIALILSFFSIMLFAMDEVDEQQILQRIQ
                     PVGKVRVQEEQGNNIEAGATKTTVVDSKSKKEPGQDIYDKYCSVCHRDGLAGAPKFQS
                     EADWKPRLASKKIDDLLASAIKGLNAMPAKGTCMDCSDAELKAAIQYMLPKS"
     gene            42604..43854
                     /locus_tag="JBH85_00230"
     CDS             42604..43854
                     /locus_tag="JBH85_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quorum-sensing autoinducer synthase"
                     /protein_id="HAU0944617.1"
                     /translation="MSNTEYQTIDNKTQYINGKEKHQNHAYPEYINHSMEKYYEGRVN
                     KSWQGKHILKGKTPTANSLIFSSNDYLNISQHPQLIKAQIAAMQKYGNGQMQSAVFLN
                     NSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
                     GVKAARAKSIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFK
                     CLLIVDESHSLGTHGSQGKGMVAKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEY
                     IRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNADFLREALSCEGINIG
                     SSGSQIVPLVTGSEANTLWLRDELEKEDIFGAVFCSPATPKNKCLIRLSISAHHEKSD
                     LLRVIECLVRLARKRPDIPLFKGN"
     gene            complement(43936..44961)
                     /locus_tag="JBH85_00235"
     CDS             complement(43936..44961)
                     /locus_tag="JBH85_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0944618.1"
                     /translation="MQHFSIPTCYFPSTAVFVDDSRDFLLNFVLQLDEGLAYRVFDSP
                     FEALDCIKQKRCELELLSERCLSEYTEAKNCPLTNHTINLDLAAIHAEVYNSRRFSEI
                     SVVVVDYAMPGMDGLEFCRRIEDTNIKKILLTGQADEKLAIAAFNEGLIHRYIKKSDP
                     DVASLITQSIHDLQLQYFQSMSDMIVRMLSVTSPNCLHDKKYAELFWRLCREKGIVEF
                     YLADNSGSFLMLDDDANISFLIVKNEADMQLHYDLALDNGASGDVLDQLHNGEKIPCF
                     WQSNLVTPQWNEWSNCLVPANRFVSDETYFYAYVQGAVLFDVRLDKILSYHQYLEELD
                     AEEMFLN"
     gene            45243..45806
                     /locus_tag="JBH85_00240"
     CDS             45243..45806
                     /locus_tag="JBH85_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HAU0944619.1"
                     /translation="MANSQEFNQPPVDELKRNWGWILGFGIFFLILGCVGLGMVVGLT
                     LVSMFFFGALLIVGGISHIIDVFKYKEWKGMIWQALIAVLYIAAGCIVLYDPFLASTL
                     ITAFLAAVLIVIGLTRMIMAFALKDSTGWGWLLLAGITAIILGILILMQWPVSGLWII
                     GLFIAIELIVTGWTYIFIAISVKTAKL"
     gene            complement(45894..47183)
                     /locus_tag="JBH85_00245"
     CDS             complement(45894..47183)
                     /locus_tag="JBH85_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HAU0944620.1"
                     /translation="MSQLKKIVKHLDESMQRSLSNSAHQLVAVGAIAFVGFPLFYVIW
                     AFWLPQPYENLPLRLIGSLLGLGLMLTPYWPLKWKQYLSWYWFLTLLFTLPYFFTFLF
                     LMNQASVISAMSLLCGVFLLVLLVDLLSLSIVLILGFSLALVSYYLVSPQMYFGEEHI
                     QMTLVIIFTIIAGSTLNYKTAMLQQQKLAGMAAAAGMIAHELRSPLLGIKSGAQALVQ
                     YLPRLIDGYQLAKKQELISSPLRDRLLLQLGGVSNRIVSEIDYANTIIDMLLVKASRD
                     NILQNCILETCSIAECLSEAITRYPFQSPRERTLITWTGDFQFKGSKLLMQHILFNLI
                     KNALYVIAMAQRGEINIWTESGDKYHYLYFKDTAKGMSKQQLNRLFNHFYTTTFMGTG
                     IGLSFCKLVMNAFGGDIVCESKEGEYALFILSFPGSV"
     gene            47539..48504
                     /gene="hemC"
                     /locus_tag="JBH85_00250"
     CDS             47539..48504
                     /gene="hemC"
                     /locus_tag="JBH85_00250"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HAU0944621.1"
                     /translation="MIFTQRTYTVYSMSAKIIRIATRQSPLALWQANHVREMLVKQWP
                     NLSIELLPMITSGDRFLKDKLLSAGGKGLFVKELEEALLDKRADLAVHSTKDMPAQLP
                     DGLLLTAICKRDNPFDALISPQFKSLAALPKNAIIGTSSLRRQSQLLAYNPNLQIKTL
                     RGNIHTRLSKLESGEYQAIILAAAGLERMGLAHHITQLIPDDIMLPTCAQGALCIECR
                     TDDLEIQELVHGLNDPISALCVHTERRVNAKLGGNCHIPFAVYCTITEEKLLLLRAKV
                     LNMDGSQMIDDEQQGKIAEAEVIADRCTESLMTKGAMSLLSTIPS"
     gene            48501..49253
                     /locus_tag="JBH85_00255"
     CDS             48501..49253
                     /locus_tag="JBH85_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HAU0944622.1"
                     /translation="MTKSLNGLRILNTRPREQAQVLNKKIIESGGIPIDCPTMEIMAS
                     ETNWINNLPDLTSVNQAIFVSTNAVRYFMMELASKNINWPNSIRVTAIGKGTSRVLNE
                     FNIQVSDVPELPDSEHLLTLNSLQQIRNQTILLVKGEGGRQLIEEYLMLKGAKLCLLS
                     VYKRVMPAIDQEFINSLWRDDLVDIILLTSEQSIHNLFKMFSIEGQMWLQNKPCLVIS
                     DRLAKVASLFGIKKILISHPERMIGALFDYKD"
     gene            49257..50381
                     /locus_tag="JBH85_00260"
     CDS             49257..50381
                     /locus_tag="JBH85_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944623.1"
                     /translation="MANSNEEQKKTIQPQQPSKVEPDINQQMKASFFGSKYLSLIISL
                     TSLLAFLAIIVSIYSIQLEKQFQNHQLVENKNLTDELERIKVEQNTVQKLLDNNANHL
                     QQIQSDLTSKMDSLNKELQTAMKQKLYQNNDWLLLKARYYLELAQINVHWSDNFNTSV
                     ALLQQADALLKGMNIPKIFTIRQTIAKEIAQLKSISVVDITGILSQLDAAQAAINNLS
                     IQSVVDQQEVLNHITKSEESGKTGWRNRLQDSVNFLEKLVVIRRHNENIQPLISPLYE
                     SAIKENIRLNLQEAQWAILNNNPAVYQFALNQAIANLKRVFNESSQNTDVLIKQLSTL
                     QNVKLTQEKPVVGQAIPLINQMIDNKELLVDQANSKKGEN"
     gene            50384..51571
                     /locus_tag="JBH85_00265"
     CDS             50384..51571
                     /locus_tag="JBH85_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HAU0944624.1"
                     /translation="MIRVLFAFIILLLSVFLGIQLNKDPGYVLIAINNWTIETTLWVS
                     VFGLFFLFFLIYGLVQFCNKITRMPGMVNKWHSRRLAQKAQATTRKGLIEYSEGYWQK
                     AKNHLIQALPNTDTPLLNYLTAARAAQKMGDSKLRDHYLREAQQSMPEAKIAVELTQA
                     QLQLANHQWEQALATLKHLQDLAPRHPYVLKLLMNLYEEIKDWQQLIALLPDLKKNHI
                     ISDQAFEQLQKNTYLQAMIDLAKHNQSDGITKLYQTLPKTLVNDTAITAEYARFLIRN
                     QDYDQAEYHLKRCLRKELDNRLIELYSLLPCEENQLLFAESLLKKNPHSAALYLCLGR
                     MCLSRHLWGKAKHYLEQSIELNPTPVAFIELGKLHEKLNDPLSSGSCYKKGLELITKD
                     ELS"
     gene            complement(51707..52630)
                     /locus_tag="JBH85_00270"
     CDS             complement(51707..52630)
                     /locus_tag="JBH85_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HAU0944625.1"
                     /translation="MSKHSHDGAHHHEHGEVTYDRAFIIAITANGLFVVMQIIFAYLA
                     NSTSLLADAFHNLGDVLGLILAWVATGLMKRKPTHKATYGFKKTSILAALANGALLVF
                     TCGIIATDAMYKLFSPTEIQAVSVMIVAAIGIVVNFSTALLFLRGSDDLNIRGAYLHL
                     FYDALISVGVVLSAGVLYLTGWLWIDPVVGLLIALVILKGTWSLFADSFRLIIDGVPR
                     DISWIKVSDFLLAIPGVKSIHDLHIWAISTKENALSVHLFMPEESLSDDLRRELVEKL
                     KHDFSIQHVTIQVEKTETECNDACHNPRIII"
     gene            complement(52627..53289)
                     /locus_tag="JBH85_00275"
     CDS             complement(52627..53289)
                     /locus_tag="JBH85_00275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HAU0944626.1"
                     /translation="MTNRERLELPNGAKKLLLHSCCAPCSGEVMEALIFSEIDFTIFF
                     YNPNIHPLQEYEIRKEENIKFAQKHNIPFIDADYDKENWFARAKGLEWEPERGKRCTM
                     CFDMRFERTALYAYEHDFPVISSSLGISRWKDMNQINDCGVRAASHYPDLIYWTYNWR
                     KNGGSERMYEIAKREAFYKQEYCGCVYSLRDTNAWRKQNTRDRIKIGLNYYSASKNEG
                     DL"
     gene            complement(53279..53842)
                     /locus_tag="JBH85_00280"
     CDS             complement(53279..53842)
                     /locus_tag="JBH85_00280"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HAU0944627.1"
                     /translation="MKNNQNLIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPV
                     IAVSQPKILLDSMDAWNTKQHNQSGLVKRVLESNVSESQAEQLTIEFLKQYVDKGKSP
                     MCGNSICQDRRFLYKYMPELAAYFHYRNLDVSSLKELVLRWRPELMNGVVKESKHLAL
                     DDIKDSINELIYYRQHFINLPEVKNDK"
     gene            complement(53832..55064)
                     /locus_tag="JBH85_00285"
     CDS             complement(53832..55064)
                     /locus_tag="JBH85_00285"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096745.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HAU0944628.1"
                     /translation="MKVYLVGGAVRDRLLGIPVQEQDWVVVGATPEELLKRKYRQVGR
                     DFPVFLHPETKEEYALARTERKSAPGYYGFICDFSESVTLEEDLARRDLTINAMAMDE
                     QGNLIDPYQGQRDLEEKLLRHVSSAFVEDPVRVLRVARFASRFHHLGFRIANETRLLM
                     YSMVKQGELAHLIPERVWQEWQKSLEEKNPEQFILSLRSCDALRVILPEINSLFGVPN
                     PHQYHQEIDTGIHSLMTLRASSELSEEPLVRFAALVHDLGKASTPIQAWPKHHGHEEE
                     GTKLIRALCARLRIPNDYRDLAVTVARAHLNIHRLCELRPNTIVKLLEQVDAFRRPQL
                     FHKILIACQADAESCGKTVVYRQTQLWNEILSECVKVTPQTFIVQGYEGKAIKEAMHQ
                     SRVACVERIMTSWKSNEK"
     gene            55127..56104
                     /gene="rsgA"
                     /locus_tag="JBH85_00290"
     CDS             55127..56104
                     /gene="rsgA"
                     /locus_tag="JBH85_00290"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HAU0944629.1"
                     /translation="MSKRRINKQQSARIAKIQKNYHEYMGNNSDNLADGLVITRFSRH
                     AEIEDNQGKRILCSIRPNLDTLVAGDRVIWQIEGEKQGVVVSIYPRGSLLARPSQKGL
                     KRPVAANITQLVVVIAPKPEISWPLLDSYLIMAEILQVHVVIVLNKIDLPCQTLQQRL
                     MMDYQLLNYPVIMASNQTPDTIVPLKQALNNQISVFVGQSGVGKSSLISSLLPHEENI
                     AIDKISMVSELGKHTTRNSRYYHLPSGGALIDSPGVREFSLWDIDCSMIAQGYKEFKP
                     YLSQCKFRNCTHINTPQCAIIDALNKGKISTQRYENFTKLCAQFNSLKE"
     gene            complement(56139..57308)
                     /locus_tag="JBH85_00295"
     CDS             complement(56139..57308)
                     /locus_tag="JBH85_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2744 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944630.1"
                     /translation="MSNLIELALRNAALDRTKLLSQVQKIEFLNGYDPRFVEGLISLE
                     MIGDIDEYVASLMYVKMTDKYTQEEKEQLTDTILTINNDRLISCQYRFPQLYQKLMQD
                     QFLSTFFSSSHLLPNIAPGTNNQSYETVSTNNKMKMESAKLYGHYEYYQCVVALITQI
                     DGSRYFYHLNPNRIFGDYMGSAPLKLSGSELKDVKDITFILHPRSMVDYREFQRLQER
                     NIVFKTVMLPVGAKSVSLSYDTDKDVLTVNNLEAGQTVTYNNLLQTPQYNRYQYTPEQ
                     YFMTQLYRGQTWAEALGEALDKYIVTRQEGATWWDLKPLFFNRKTTKNNMIAAARIKK
                     EIEAGATSFDFTGVSRNGLLNQLLTTAVDYQLEYQRGLQNGVLSAEDLTTSAALR"
     gene            complement(57469..>58547)
                     /locus_tag="JBH85_00300"
     CDS             complement(57469..>58547)
                     /locus_tag="JBH85_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lpg2745 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944631.1"
                     /translation="AQSYDVDEQLKAIMSWLYQFNPILKASNKGLLSFYAELEPKFHS
                     EGHLEKRVETGTDNLLYRIKTFLVSLFVTPFEVFPFSGKTISFWDIKNVIFSEGQEIY
                     NQFAPFIMTNKLDALIAVYKKTMDEHIILCQKNKHICKWLTHYQSTLDWYQLVEAGDL
                     SKMDVYWFDPELLFHVLVHFRLINKSLGEKIVNFLDELIHTYAQNNNEFQIQLRVNIL
                     FSRFLKSLDEQQRRKLILTLSLFDPVEAKSKFLTNCIHYVTNRLCQISMHQLDSSPNF
                     FGTYQCIDSKKLLINKTDVKQVSAILEAFKEMLHSLEERCNPEQLENMLIFLRNISRP
                     ILTVAEIEEAQQSARVIDYIGAPT"
BASE COUNT        18605 a        12348 c        10115 g        17479 t
ORIGIN      
        1 tcgtctatca acgtatctca gtaaaaaaag agtaaataat gcctgattta agccatgaag
       61 cctccgcaaa gtactggttt gagtaccttg accccatgat ttacagggtt atcactttta
      121 tggaaagtgt tgaaaactgg actcttgatg ggaatcctga actggaagaa gcaatgaaac
      181 agctagggca agaacttgat gatattgaaa aaattgactt aggcttatta gcagaagaag
      241 ataaatttat tcgtatcgtt gggaatatta aatcaggaag aggcttacgt ttgctccaag
      301 caatagacac agtccatcct ggaagcgcct cccgggtgtt aatccatgcg gaagaaacca
      361 gtttaagcag cagtgacccg gcaggttttt ttctaaaacg caatattgta tttgaaagac
      421 taaggttatt atcgcgagtt ttttgccaat accgtctaaa actcgtttta cgagcactcg
      481 aaggggatga ataatgaaag tattacctaa actggccttg gccaatctgg tttgttttac
      541 cactttatct gtttttgctc aacctgctga cccatctgga caacagacaa gcaccaacac
      601 ctccaatctg gtgacctacc tgacgaacct gggaaaatat ttaggctatg atatcactca
      661 atccagcaaa gcccctaacc cgccttattc gcaattattc aattccaatg tagttcaact
      721 cgttcaaaat tacgcctata ataccttttt gggcgctatt cctgtcgatg ccatgtcgca
      781 gagcttaatg aattttgtta ccgataaggt acaaggaaat tcattaatta ataatttggc
      841 aaatactact tttaaatatc aaaatttcag cgccccatcc tccggcgcag atgggaaaat
      901 tacagcgaac ggcttaatag atcaatcaac agctagtgcc caaacaccca caacacctgg
      961 cattttttca gcgcctcaaa tcacaacctc cgggacatac ttaaatgacc cagtcagtca
     1021 ggcagtattc aatattctgg gcaccccgga ttacagtttt tgtatggaca atgaacaaaa
     1081 gaactggtta cccaattgta acctcatgta tcaaaatctg gtcatgcaaa atgtaattgg
     1141 cactttgccg ccagcacaaa cctctggttc aacgcctgct ttttattcct acaaatacaa
     1201 tcaaccgctt ataagtcaac tgaacagtaa ctctttgatt gcccccttac tgatggatac
     1261 ctctgcgtca caatctgggc aagattctgg attaacggca aaaagccaag cccagcaagc
     1321 gcttaatttt atcagatacg caagcgctca agtcacccct ccttccttac ccaagttgag
     1381 tgcatacagt gagttatgga atcaagccac tgcaaaaccc aattctgcag gctataatga
     1441 agtccaacaa aaacaagcag ccgcaacatt aagcagttat tttaataatt tgcgtgttta
     1501 tgcagcgcaa acttctgttg gcgtgagcaa cctctactat attttatcca aaaggttacc
     1561 tcaaaatatg agtgcagacc aaagtaacgc taatatcaca agccaagcgc tgaatgaatt
     1621 taacatggct actcgacgat tatttgatcc taccgcctcc aacactcctg gacaaccaaa
     1681 ccaacaatgg attaaacaaa ttaatgacgc atcccctgct acagttcaaa aagaaatagc
     1741 gatattgctg gctgaaatta attatcaaat gtatttggac agacaaatac aagaacgaat
     1801 attattaacc aatagcatta tgctattgca aaatttaaaa gccgctcaac ccactgctga
     1861 tttttcaagt caaggctctc cttctgagca ataatggtca tcactttggc tcctgggatt
     1921 ctaattccag gggcttattg tacgcccgct taaaaatttg ataaacaaaa tcaatcatct
     1981 ttttcccttg cggttgattt tggtttaaat aaaagcccga gcttaatgta ctagctaaat
     2041 gatagttttt aaaaaaattt ttcgcatcta acaaatctgt caaataatca ccatgtgatt
     2101 ccataggata gtaattggta attacccagt caggcctcac tttagaattg agataatcgg
     2161 cgtaaagact taaatcgttt ttaaatggtt tttgggttaa atcgctatta ttcaaacatt
     2221 gcgcgtctat gaatcgaatg tcttctcgag aaaaaaacgg aataatccca caatcatcta
     2281 acagaacgct gtcgcccttt tttgctttcc ggttgagtaa atcagcaata gtcattctat
     2341 tttgagcacg ttcattatat tctataactg attttgataa atggtttaaa tcattccccg
     2401 gcacaaaaaa ccaggtaata aacaacatta atcccgcaat tggatattca ggatcccatc
     2461 taaagggttt aaaatattgt ataaattgat taagtcctaa aacaggtaat atggaaaaaa
     2521 gagcgaatgg acttaaaaac aatcttaaac cataggtaac cacaggattt gctttccaaa
     2581 gcaacagact atacaaaaca gagggcaacc aaagtaaaga atggcgacaa tctttcttag
     2641 cagataataa atagggtacc gataatataa gtaaaggtgt tataaaaaga aaataatcca
     2701 aatctactgc caaaaactgc ccataagcta acgctttgca acgatagcta ttaggaatcc
     2761 aatgaccgaa ataaattaat ctccaaataa aatacacaag ataaggtaat gtaaagcaaa
     2821 caaaagtaat tgaaacccat aagaacaatc tcttatgatc tttaaaaacc agctccctgt
     2881 gatctctcaa atattgacat cctataaaaa cagccaaagg aattatccaa atgattccct
     2941 caaatcgtgt taagctcaat aataacaaga gcacattggt tattatccaa tgattggttg
     3001 agtcaaggga aaatcgattg atccagtgac tgtcattaac agtgtgataa ccgaatgcca
     3061 aggtacattg ccatatcaat gccaaagata gggcacagta aaataaggtt tccaatccac
     3121 tgaccgtcca ccaagccact cctgtataat ggctaaataa aaaaacgggt aatatggata
     3181 atagagggct acaaaaaagt cttgccaatc gatataaaaa cagtaatgac aatcccaagc
     3241 tacaacagga aataaccttc atactgctaa ccagaggtaa ttgcaattta atgaccgatg
     3301 cagcaatgat gatccataaa aaattggaat acccctctac tggaggcaga gtcgcatgcc
     3361 acaatagtcc tttcccactc gctaactgtc gcgcataata ccagctgata taagcatcat
     3421 ccgttgtgaa atcccaagct gtatacaatg caaccatcag gtcgtaagcg caataaatgg
     3481 ctatcaatag cacgagaatg gtttttcttc ttggcaatag gagggcacgc aaaatgtgtt
     3541 ctgctccaaa aattatttat aacccaattc acaatagcaa tatcacaaaa tatcaacaag
     3601 ctctaaaatc aagatgcaaa aaaaataatg ggtatgatat gattttaacc taatttaaaa
     3661 atgctgtatc ctcaatggaa taatacggga cttacaacaa acaccaaaag tccaggttat
     3721 tggtataagg gaatatcaca atatcatttc aatgacagtg atgcacatcc tctggactaa
     3781 aaatgataga cctggcatta aaatgcaatt tttgctcgat ggttggtgtt gattgataaa
     3841 tccggtacaa agttctcagg atgagttaac catttaactc agcgagcgat tatgtccaag
     3901 ccttattttt tttatgtcag cggaatgaat tgcaccagtt gcagtaatgc catagagtcc
     3961 tttttaagaa attccaattt aatcaaaatc aatacatttc atgcagacat gagcacccca
     4021 gaccccaaaa aaattgtgat atctctttct gaagaaagag aaaatgaaca tgaaagcaac
     4081 tggaaaatca ttaaaaaact aattgatgac acagggttta cttgtgaaaa ccatgaattc
     4141 cctccaatta aagatgagaa acctactctc ctccccgaga aaaaacagac agcagctcaa
     4201 caagaagcca gcacattatc cacaatattt agcagcgcaa aaaaaataat cacttcccat
     4261 tggttgcttg gagggctagg ttgtgtcact ggtgctagct taatgatcct gacgatggct
     4321 ataggcggtt tacctcttgc tgtaatgatt cccctagcgg gtctcagcat tttattaacc
     4381 attgcgcttg gtgcccaatc ttattacgag gcttggaaaa agttagtcca atctcgcaca
     4441 ctcacaatgg acacattgtt ttcaattagc actgtttctg ttcttattgt gtcgcttgct
     4501 tcattctttg taccgtggtt acctatgatg tttgaggcag gattacttat ttatggattc
     4561 aggcatattg gtatcgctat tgaggacact atcaaagaca aaataagctc aaccaagttt
     4621 caagacagaa ccccacaaaa agtcagatta tatcgccatt ctgattttaa aaaaacgagg
     4681 attgaagaaa ttcaacccaa tgacattata caagtgaaac caggtgagct tataccattg
     4741 gatagcgttt gtgagcaaga caccctcatt tatcccacca tcattaccgg tgctgtcata
     4801 cctaaacaat ttcgtagtgg tgaaaaaata cttgccggaa tgcgtctggc aaatgatgca
     4861 aaaccactca ccctccgcgt tctaaaaact gcaaaagagt cataccttgc ccgtcttgat
     4921 gaaagcatag ctcaatctgt acttgaaaag gcaccgatag agataaaaac agggcagctt
     4981 cttagctatt ttatcccatc cattattgct ctctccatcc tttcagggat cattgtcggc
     5041 ttgattgcta caccagcact tgcgatacaa tgcgctattt cagtattggt ttctgcttgc
     5101 ccttgtactc ttggtttaat tattcctcta gcagtaaaaa ctggaattca taaaggagcc
     5161 gaacacggtg tgcagtttaa aaattccagg gtattacaat tagcagaaca aattgatgta
     5221 gtcatttttg acttgaatgg cactttaaca accggcgttc ctgtggttaa agaatatgcg
     5281 gtattaaatg atgccgatct ttcttctgag cattttctga gtatttgcaa tgtattggag
     5341 gggcaatcaa aacatccttt cggaaaagca atacaatcgt ttactcaagg aatcaataaa
     5401 caaaaattca atattgctaa tttggatcat tcaaaccatt caggcatttc agcagagatt
     5461 aatggtattc aatatactat tggcagtaaa accttaatgc aggaaatagg gatttctaca
     5521 tcttcgcttg aaaaccaaat gaatctggtt gcgggcgata gcctggtatt tctagccaga
     5581 aacaaacaac tattaggtta tctggtcatc accgacccct tacgaaaaga tgcaaagcaa
     5641 acagttgatg cattaattaa aatgggaaaa gaagtgcatc tatgcactgg tgcagatgaa
     5701 aaaaccgcct atcgctatgc gcaagctctt ggcattaaga aagtacatgc taattgtgtc
     5761 gctacaacta tcaatacaga agatagatcc aaaccagttt atattaaatc attacaaaat
     5821 cagggactaa aagtagctat gattggagat gcggctaatg acgcaaacgc tcttgctgcg
     5881 agcgacttcg gtatagcagt actgtctcaa gacagcgatg aaatcaccca gcaacacgcc
     5941 tcagccatta tacaaagtgg aactatattg cctatagcca atgcctttgc catatcaaaa
     6001 caaacagtaa acaatatcaa ccagaatttg ttaattagct tagggtacaa tttgacaaca
     6061 gtattaatag ccggcggtct gctagtcgcc cttggttttg cgctaaaccc tgctattggt
     6121 gtggcattaa tggtaaccca ggcttgtttt gtcttgctca atgtataccg ctttaaagag
     6181 caacccttgc aacatttgca agacaaagtt caggaaaaac cagaaccggc tccttcttct
     6241 tatgaggcca tgaaaaagca ttcacccaat ttccatacag ctcccgagat taatcataaa
     6301 ccagccattc aatctggaaa gcagccgacc aataaaaata aatcaccttc cttttggagt
     6361 gattattttc ctgaattatt tgaggaagaa aaggacacaa gcaccgaaca cctaatgaat
     6421 aacaaaatag gataagccct aaataaagct tggctgaatt tgaaatgagg aaggccaatc
     6481 accttcctca atcataacaa tcaattttga tttattatgc tctaaaggat caagaatgtg
     6541 atgtctctta ccaatatatg atgactcata aaaatcgcat gtgaaatgag gtaatcagca
     6601 gtatataccg catcattata tagacaataa ataaattata tggtcaaatt ggcaaaatta
     6661 attaacttac attttaagaa aactcatgcc aacaaccttt gaagataaat catccaaagt
     6721 ccccagttta aaatccctgg ctgctaatgt cattcaaaaa accaatgcaa atctcttttt
     6781 caggttgcac tcgcttgaaa ctccccctga gataaaaaaa gggtttattg acaaggagct
     6841 agaggcatta acccacgaat taactgagga ctatcaaacc aaggtggaag ccaggaacga
     6901 aaaaattgag gaatgcagtt ccaatcttag ttctaatgaa tgttttgtaa aatgctctgc
     6961 ttttaccctc actacattga tggctggagt gcacgttggt atttattaca tcctgaaagc
     7021 agcagctgtc gatccatcaa cgcaaatagc atatatttcg agtattcccg ctactatttg
     7081 tttctctatg tgcgttggag tctgcttgaa tcgacaaatt accaaatgct tgagttcttg
     7141 ttttacgccc agtgtccccg ataaaattac tgtcgatttg gatgagttgg gtagacaatc
     7201 ccatgttagt ccataagcgg ttttctggat tccttgaaag aaaaaagccg acttattcgc
     7261 taaaatataa tttaattaca atgattcttc actccctggt aattgttaaa aaatagggag
     7321 tggtttcata cacccatttt ccaccgtatt tttttttgca gtactcatca aaaaactgca
     7381 ccatgccgtt tacaatatct tgatacattt taccggggag atccttgaat aatggggcac
     7441 cgtgtataaa gttttcaaat aacccgagat caggtaattc cacttggcaa tgttctacaa
     7501 caaaagaaat gcttttaaat ggcaaattat ccaatgccct tcggcattga acagaataat
     7561 tctcccgcat cattttagat tgcacgacat ttttagcgac atcagggtaa agattttgaa
     7621 attgcaggct gtttaacact tcaaacaaag tgctttgttt gccagaagaa aaaattgcac
     7681 aaattttacc tcctggtttc aagacatgat ataaattgga taatgatttt tccaaatcag
     7741 tccagtgaag acaccaaaat gataaaatat tatcaaatgg cccgtaaatt ataggttctt
     7801 gaatgtcccc tatatcaaaa cgaacgttga tactcctaca atgtttgttt gcataatcaa
     7861 tcattgtttt tgatcgatcc aagccaagaa catatccatc agggactaaa ttggctagca
     7921 tttgagtgaa actgccatca ccacaaccag catcgagtaa gtaatcatta ctatcgatag
     7981 atatctttgc aagaaacttg ctggagattt ctcttaggat atagttacct tttgcataat
     8041 tggttgcaga ccaattattc aatatggcaa gcaaactttc attatccatt cgggatttct
     8101 tccaaaatga tttaccaaga gcctcttgta aattatagag ttctccaaca caattttcta
     8161 aaaattggaa gcttttgatg ttgtattctc tgagatctct aaactagtga tgttataaac
     8221 aaggaatccc attaggccat tgcaaccaat ttttctcagg ataaggtaat gaaatatcaa
     8281 ccaaatgcaa agtataggca tgtctggatt gattagaaaa attagcctgg cttttatgtg
     8341 gaactctgcc atgtagtata attaaagcgc cttttttaac aggtaaaggg acactgtttt
     8401 cttctggcca aggacttgaa tcgaaatttt caaaataaat ttcgttttct cgacgaaaca
     8461 tcctctgctt taagggtgtg gtacacgggc ttggaatcac ttccaaacag ccattttcca
     8521 aagtagcatc ttctattgca aaccaaaacc ctaaagcatc actatcctca ccaaaaatat
     8581 aggtactatc ctgatggcaa agtacttcag cccctattcc cggctgtttg aatatgtaca
     8641 tcgattggac caatccaagt gttttcaacc caagctgatg tgctatcttc ttaattcgat
     8701 catctcggga atattgccta aaaacaggat ccaattcatg taaagcatgt ccaattttat
     8761 taattgattg attaaaagga cgtagccaat caccggcttc atcaaaagca cccggctcaa
     8821 aaaaataatg aattttatct ccagaatcaa ggaaatattg tttttttgca tgttcgttgg
     8881 tttgcgtgga aaaaattgtt ttaggtatct ctgcctgatt attttcaagc aatgtttcaa
     8941 tgcgttgctt taatagatcg catacagatt ctgaaaagaa attatttatt accaaatatc
     9001 catttgtgaa aaaaaaatca cattgctcag aagaaagttg catcctatgc tcctcaaaaa
     9061 tcaaaatcag tacttgggga aatcaccagg gtaagggcaa acagctttta atgagcataa
     9121 gcgaaatgct ctcattaaaa gcctttcccg cacaaagatt aggtattgtt cataagtcct
     9181 gaaaatattt cagttaattt ttccattaca tcatctacgg taattaattt catggcttca
     9241 tatccatgga cctgcgtacc ccaaacactc ttctctggac tcactcctaa tacagtttgg
     9301 atagcttgcg aatacctgtt aactaccaaa tgttgaaaag tatacgggcc agaaatagag
     9361 ggattggtaa cagcatgcaa agccacaaca ggcgtgccta ccgctgccgc catatgagaa
     9421 ggtcctgtat caggacacaa gactgctttt gctttactga tcacagccaa caattgctta
     9481 ggttttgtct ttccaactaa attaaccact ggaatttctt tcgctatttc ctctgccaat
     9541 gatttatcat gatcgcctgg ccctccggtt aaaacaactt tgacatccca tttaacttgc
     9601 gcctgtttca gaacctcaat gtatcgctcc gccaaccaac tgcgctcagg tttgctggct
     9661 gcgggattaa caactaaaat tggcctttct tgttccggca aatgattttg agcccattca
     9721 taatctgcct tggtaatcgg taaatcccag tggattattt tttcagtgac acctaaaggc
     9781 tcagcaaatt ttaaaaagcc ctcaagtgtg tgctccaatc caggagaaat gctttccctt
     9841 ataaacagac gatggccatc attcgctctg tgagaatcat agccaacttt gcgtttagct
     9901 ttaataaatg gaataagcca attagttcta aaactggctt gaggcgctaa caacacatca
     9961 aactggcgag gcaacatttg tttcctaaac cgccaatagt cagcaagcgt tttaggttta
    10021 tcaataacaa taaactccac gccttccatt ccttccacca aataaaaggc aggttttgaa
    10081 ataatccagg tcaattgagc attaggcaat ttattttgca aggtccttat cagtgggacc
    10141 aacatcaaaa catcccctaa agctgaaagc cttataacac aaaccgattt aatcattctg
    10201 caatacaaaa cgagagccac aataagggca aacctccacc ccggttttct ctataggcaa
    10261 ataaaccttg ggatgagcat tccataactc catctcatct gttgggcaac tcaatggtaa
    10321 ttgatgtcta tgtacgacat aatttttttt agcacttgca ggttcttttg ttgttttcct
    10381 catgttgttc ctttgcggca tgatgtcaat tagagacagt attatctaat atttccctta
    10441 ttttcgctat aatatctgta ttaaatccca cattttgcga atcataaaat aaagccccct
    10501 cccaatgcct caaccaggtt aattgccgtt tggccagctg ccttgttgct gctatacctt
    10561 tttctcgcat agtttcataa tcatagtggc ctgcaaggtg ctggagtatt tgcctatatc
    10621 caacacatcg catggagggc aagttgattt gaataggcca ttttgcttgc aattgttgaa
    10681 cttcttctat gaatccctca ctaagcatcg catcaaaccg ttgcgcgata cgttcatgca
    10741 accaggatct ttgctcagga aaaagagcaa gattaacaaa ataataatca ggccgttcat
    10801 ggggtccggt caaataggtt gataacgttg aaccagttaa gtaataaact tccagcgctc
    10861 tttgaattct ttgcgtatca tgagcatgaa tgcgagctgc tgttaccgga tctaattgac
    10921 ttagcttttg ataaagaaaa tcccaaccct gtgataaggc ttcctcctcc agtcgtttac
    10981 gaacagcttc atcggcttca ggcaaagtgg ctaacccttt ttgcagggca ttaaaataca
    11041 tcatagttcc acctactaac aaaggaatat tccctctttt gatgatttca gcacacaaag
    11101 acaaagcgtc tgtacaaaac tgagctgccg aataggattc aaccggatct ttaatatcaa
    11161 ttaaataatg aggcgctctc tgtaattcgt ggattgaagg ttttgctgtc ccaatattca
    11221 tatctctata aatcatggcg gaatcaacac taataatttc aaaagggaaa tgagttagca
    11281 actcgcatgc taatcctgtc tttcctgaag cagttggtcc cattaaacaa aacactagct
    11341 tattcatgca ataacatccg acaatcatca atggttaacg ctttacatgt attacatttc
    11401 tcttcttgaa gagagagttc cagcaacaat tgattcattt caatacgctc ttcaactgtt
    11461 aattgttttg ggtcaaacat ttgagaacgg ctaattaacg ctatcaattg ctcagtatca
    11521 aaaaaatcca gttcgcagag aacattaaaa aaacgacgaa catctaaata gggcgcattc
    11581 aaagggatgc tgcgaattaa caagtcatca gcattagggt actcaatctg tattccaaca
    11641 cgagtcaact catgctttaa gtgatccagc ttatgtatcc attggtttgg taatggataa
    11701 cgaattgaga tcaataaagg ccggctctcc aagggcaatg ccttttgcat tagctgcttt
    11761 tctatccatt cttgaaacaa tgttacgatg tctacaaggt aaggctgttg ctttatcaaa
    11821 accaaaataa accgctcatt taagataacc cactggaact ctgtttctgg atgatataca
    11881 gagctggttt ttttataccc tttgcaggtt atagatgatg ataatgaatt gtcactccag
    11941 cttggggata aagctcttgc cccttcatag gactctctgt cattgcagat atgggaaggt
    12001 tccgaaactg tattttgctg ctcattacaa gaggaagcag catatgcgta ttccattgtt
    12061 tctgaatggt caagagtcga ttgcaacgct ttcgtcaatt gggaagtaaa aaaatcatgt
    12121 accaggcggg gctgttggaa tctcacttca tgctttgtag gatgtacatt cacatccact
    12181 tcagaagcag gtaaagtaaa atacaacaaa caaattggaa atctgcctgc atgcaataag
    12241 ccatcatacg cttgtttcac tgcatgttgg agtaatttat cctttaccat gcgttgattc
    12301 acataaatcc actgcctatc attctggctg cgttgcaagc gatggttgct tatccagcca
    12361 taaagacgca taccactgtg ctccacatca agaaaaatag cttctctcat gaaagtattg
    12421 cccaaaattc gacccatacg aatggctttg gcttgctcac ttaaggctgg cggtaatgaa
    12481 aaaatcagtt tcttattatg cttaagcgtt aatgcaatct gaggagcgct taatgcaaac
    12541 cgtttcacaa ccatttcaat agcttgaaat tccagttttt cattttttaa aaaccgctta
    12601 cgaactgggg cattatagaa caaatcagaa acatcaatgg tagtgccaat attgcgcgca
    12661 caaggagaga gagtcctgtt ctccccctct actcgcaaca tcattgcatt gtcctgctcc
    12721 tcaggctttg aaatgatagt cactttggca acagaggcaa tacttgccaa tgcctcccct
    12781 ctaaagccca tactatcaat ggaatataaa tcatcaagcg ttctgatttt actggttgca
    12841 tgagctgcaa tagctaaagg caagtcgtct ccaacgattc ctgaaccatt atcactaacc
    12901 gtaatctgca gcaatccccc ataattgaca tcgacaccaa tcacactggc accagcatcc
    12961 aaagagtttt ccagcagctc cttgactacc gaagcaggtc tttctataac ttctcctgct
    13021 gcaatctgat tggctattgc tggcgaaagt tgatgtatcc ttaagaccat gtgccaggta
    13081 tcactaattt ttgcccgggc ataagtcttg cccttgcctg aaggcggtta attgattgta
    13141 atgcgttcac agatacccta tatcgagcag cgatagcagg aagagtttca ccctttttaa
    13201 cgatatgaaa atttggagaa atcatagcct caattcgagt cccatgagga ggatgatccc
    13261 aaaaataatt ttttagtcct tgaaatattg cctgactcaa tcgctcctga taggcagggt
    13321 tggttaaatt tctttcctca cggggatttg agataaaacc ggtttcaacc aaaatagaag
    13381 gaatatctgg agatttcaga acaacaaaac gggcttgctc cactttgtta ttatgcaaat
    13441 tggtaaaatt atccaattga cctaatactt ttccccccat ttccaaacca gcatttattg
    13501 ttgcagtttg tgataaatcg atcaaaacag aacgtactac cccattacta tcatccaatt
    13561 cacctaaatt cactccacct agttcagagt aattctcctt ttctgctaac cagcgtgctg
    13621 cttcactggt ggcccccctt tgtgacaagg caaataccga ggctccatta gagtgaggat
    13681 tattgaatgc atcggcatgg atagaaatga atacatcacc attatatttt ctggcaatat
    13741 ccaggcgttg tctaagtcca acgtaataat ctcccgagcg tgtcaggact gcgcgcatac
    13801 ctggttgtct gtctatcaat cgtttaagtt ttaaagtaat ggccagcaca acatccttct
    13861 cgttactacg acgcggacct cttgcaccag gatctttgcc cccatgccct gcatccaaca
    13921 ctacaacaac atcacgcaaa ggtttttttg atgggttatg aggaacctga acaggtgttt
    13981 tatgcacagt tattcgttgt tctgatggct ggctggatat ttttgattgg gtttgctgga
    14041 ctggagcttt aatcgtttta acaggcgaac tcaactgcct gcgattattt atgactaaag
    14101 gagtatcatt aacaagatca attctgatcc cattcaattc tcctttcggt ttccatgaag
    14161 atgagcgcac cttgactggt tgttttacat ccatgacaag cctgagcgtg tttttggagg
    14221 gactaccgct tcttacctgc tgaataagcg aattgattaa acccaattga ctgatattga
    14281 cggctaattg tgtatcactt aagtctaaaa ccacacgatt gggctgactt aaggtaaata
    14341 gcttatgggt aaatgaacct tgtatagaaa gataaagaga cgtcatggtt ggttgctgag
    14401 aaactgtaat attctttaat tgtgcagaaa atacagcaaa agaacttggt agatataata
    14461 acagacttaa gacccacgct ctcatcatca ttcacccgcc aggcaagcta aaattctttt
    14521 acccgcgaca cttaatgcag ctatttgtat taagcgccca gtccctttaa ttattaaatt
    14581 aaactgaata tcgactggag gcaatgtttt tccaccatgt tcaggccatt caatacaaca
    14641 aacgctctga ttggaaaaat agtctctaaa acctaaatac tccagttctt cttcctggtg
    14701 aatacggtat aaatcaaagt gatgaatatg aaattgacca caattataac tttcaactaa
    14761 tgaaaaagtt ggactcttga tggctgaaat taccccgagt gattttagca ttgcgcgaat
    14821 aatggttgtc tttccggccc ctatatcacc acttaaagta atcaccaaag gcgctgagat
    14881 acaaaacgcc aatttttctg caaatctttt gctctcttgt tcactaacca aatccaaagt
    14941 tatgaaatta tcattatctt caatagccat atcgagaaca ctacataatg tatctgttta
    15001 gaaaaagcct gtcagccaaa ccgttataca caagtattga aacagagttt gttacctcag
    15061 taacactcag gttaccttct taataaatca tcgcactaga tacaattcaa aatgcttgga
    15121 atttcatcaa gtaagtcgct cgccaatacc ccaacttctc ctgatttttc agcaaccttg
    15181 tctccagcaa cagcatggac ccacacccct aactttgcag catcggataa ggtaaaaccc
    15241 tgggcgcaaa aagcggcaat aatcccactc aaaatatccc ccatgcctgc ggtagccata
    15301 cctggattgc cttgagggca gacaaaaata ttcttttccg cggtctgaat aaccgtgcct
    15361 gctcctttca ataccacaac accaccatat tgtttttgta tagcagatgc cgcatggtat
    15421 ctatccattt gaacatctct tgcagtacat gaaagcaaac tggcagcttc accaggatga
    15481 ggtgttaaaa tccaattgtc atccatttgg ggatgttgag aaagtaatct cagcgctgaa
    15541 gcatcaataa tcatgggtaa ttgggttgta atggcagtta aaaacaaggt tttagcccaa
    15601 tcactatcac caagcccagg cccaataaca caaaccgtag cttttgctaa taaaggcatt
    15661 aactcccctg ctgttttgac accccagatc atcgcttcag gaattaaggg taaagcgctc
    15721 ttcgcataat ccggccaggt tgcaacagta actactcctg ctcccgtctt gagtgctgcc
    15781 ttggctgcca agctcactgc tccaggcatt cctgggcctc cgcctatcac taaaacatgt
    15841 ccataatcac ctttatgaga gttctttttt ctagctgcga gaggcaatgg caaggtagaa
    15901 tccctcagca gggaagcaaa tcgggttaat ttagttgtac atgcctccag gtttaaatga
    15961 gcacaatgaa tcacaccaca ataatctggt ccatccaaag tatacattcc tgttttaagt
    16021 ccgataaaag taattgtggc agtcgcattg acgcaaatat tctctactaa tcctgtatcc
    16081 gcattaagac cagatggaat atcgattgat aataccggta acccactggc attgatttga
    16141 tgaatcgcgt tggctattac cccatacacg gctccttgta atccaatacc caataatgca
    16201 tcaacaatta attcggcatc gccatctaaa ggttcatctg cggattgaca atgtactcca
    16261 gatgccaatg cctggcgtgc ggcattcctg gcagcggaag gtaaatcttc tattgattta
    16321 cattgatata cagtaactga gaatccttgt tcatgagcta atctggccaa gacataacca
    16381 tcacctgcat tattgccagc gccgcagaag acggctatat gccttacatg cgggtagagt
    16441 ttctgtaaga aagaaaatgc ctctgcgcca gccagagcca tcaaggcatt ttcgtctttt
    16501 tgatacaaag ttgcagcttg ctgctcacaa gctttaattt gatcacaacg atacagagca
    16561 ttttctagct tgttcacctc ttggctccaa attaacgtaa atttgatata acgaccacaa
    16621 aatattttta tatcgctatg ccaagatcat gctgtaaaaa tcagtgcttc ttggctacga
    16681 ttcgcttaaa agaaaccatg ccgtctactt taccaatttt agtgatggct tattttttgt
    16741 agcactttca gaggaagaag aagttttagg tggcggctca tcatcttcgt caactgaaaa
    16801 agcaatccct ctgccatttt cttttgcata aatctctagt acagcattgg gagcaacaaa
    16861 aatttgctct gtttgcccag aaaagcgtgc cgtaaacaca atgcgatcat tttccaataa
    16921 aagtcctcgg gtcgctgagg gagaaatgtt taatacaatt ctatcatgct ggacatgctc
    16981 ccttggaacc tgcacattgg gatttgatgc atctacgaga atgtagggtg ttaaatcatt
    17041 atcaacaatc caatcgtaga aagcacgaat caagtagggt ttgtttgatg tcattgccat
    17101 aattatgctg ctcttatttg tctctcagcg tccgtcaaac ttgtttgaaa agaatcacgt
    17161 ttaaacacac gctgcatata ggaaattatt cctttaaaat taggcgcaat ttccaaacct
    17221 aatttaggta accgccataa taaaggagcc aatgcacaat ccaaaagcga aaactcatca
    17281 cttaaaaaat aaggtttatc tgcaaagaca ggatctaaac tggttaaact ttcaagtaaa
    17341 ttagctctgg cttgctctac agattcctcc cgcaaaatag cgttcattaa ataataccaa
    17401 tcctgttcaa ttctatgcat cattttgcga gcttccgcac gggctactgg ataaactggt
    17461 aataatggag gatgagggaa acgttcgtcc aaatattcca taatgattct tgcttcatat
    17521 aatacaagtt ccctatcaat taatgttgga acggttccat aaggattaat agacaatagg
    17581 tcagctccag gctcatcttg ctttactgca agaatttcaa cattaactcc tttttctgcc
    17641 agaacgatac gaacttggtg actataaaca tcatctacat cagaaaataa agacattatg
    17701 gtgcgctttg caacgattgc cattacctta ctcctatcaa ttcatttaag cctgttaaaa
    17761 tggcttttta tattctagtg cacaaaggtt gctattctat cacattttta atcttctggg
    17821 ttactttgag caaatcttct tattttagcg tgaactcgat acaagaaacc agatatattt
    17881 tctgattctg aagacaacca tttgagattg aactctgtat aaaaggcaaa aatgtagtac
    17941 tttttacaaa actgaggagt aagcagccta ttcctatttt aattgtttcc aataagcttt
    18001 cttcagtgaa taagctgcta taaggaaaat acagaagaac aaaagaacaa aaactcctaa
    18061 tttataacga attagcttgg caggctcacc tacataaacc aaaaaattga ctaaatccct
    18121 taatgcgctg tcaaactggc cttcaaacat ctcacctcgt tttaccacta ataaactatt
    18181 tgcatgcgaa tttttatctt tgactaaaat gacttttcca atcaagggtt ccaaaacatt
    18241 aggcatagca acatcaggca ttagtaaatt attagcacca aaaggtctgg aagggtcgct
    18301 gtaaaaactt ttcaaataat tatatatcca aacaggccct ctatctcgcg cacttaaaga
    18361 caaatcagga ggcaccatac caaaccattg cttggcatct tcaggtgaca tagctatttg
    18421 aatgggatca taaatattgg cctgagtaaa aattaagtta ttttttaata aatcttcagc
    18481 aatctgacca tcaaaagtag ttaatccaag atcctgagcc atgcggttat aacgcatgta
    18541 tttgagagaa tggcatcctg agcaataatt cataaacatc tttgcccctc tttgcaaact
    18601 ctctttatcg tttatatcaa ccggtacata atccattgtt aaattttctg taaaagcagc
    18661 gtttgacatt aaaaatgcca atgcagcaac taataacacc tttattttca tcatttttca
    18721 cctatccgtg taggtactgg ccgggttttc tcaaaacgac tataaatagg catcaagata
    18781 aagtaagaaa aataaataac agcggcaatt cgagctaaaa acaaccttac tggtgtaacc
    18841 ggagttgtgc ccaaatatcc taaaagtaga aagctaaacg caaacaaggt aatgcttatt
    18901 ctggaataca ttcctttata tcttacagag cgcacattgc ttttatcgag ccagggcaaa
    18961 aagaaaagca ataatatggc agcagccatg cacaccaccc caattagctt atcaggaata
    19021 gcccttaaaa tggcataaaa aggcgcgaga taccaaacag gagcaatatg atctggagtc
    19081 accattggat tagcgggcac aaaattagca tgctctaaaa aatacccccc catttcaggg
    19141 gcaaaaaaga caaccgcaaa aaataaaatt gaaaagacta tgatacctac aaaatctttc
    19201 acagtgtaat aaggatggaa gggtattcca tccaaaggct ttccatcctt atccagggcc
    19261 ttcttgatat caatcccttc cggattgttt gagcctactt tatgcaatgc aacaatatgc
    19321 aaaaacacga ggatgatcat taaaatgggt attcctatga catgcaaggc aaaaaatcgc
    19381 tgcaacgtcg gatttgcaac agagtaatct cccctcaacc atacagcaag acctttgcca
    19441 atataaggta tcgctccaaa taaggaagta atcacttcag caccccagta agacatttgt
    19501 ccccagggta ataaataacc aaagaatgct tctgccatta acaagaggta taaaaacatt
    19561 cccagtaacc aaactaactc ccgtggtttc tgataagaac cataaagcaa gcctctaaac
    19621 atatgcaaat agataacaac aaaaaaagca gaagctcctg tggaatgcat ataacggagt
    19681 agccagccaa aattgatgtc ccgcataatg aattcaactg aagaaaatgc ctgctccgcg
    19741 tttggcgtat aaaacatggt tagccataaa ccagtaatga tttgattgac taaaactatc
    19801 agtgctaaag atccaaaaaa ataaagaaaa ttaaaatttt taggtgcata ataattactg
    19861 aaatgcgctt tccaagtgct aacaagaggg aaacgttcat ctaaccaatt gactaaccca
    19921 ttcatgcctt aatccttatt ttgcatcctc acctatcaca atggtgtgtt catctaaaaa
    19981 gtgataaggt ggtacttcca aattgatagg ggcaggaacg cccttaaata ctctgcctga
    20041 aagatcaaac attgacccat gacatgggca aaaaaagcca cctggccaat cggggcctaa
    20101 ctcaccaaga ctaggtttgt attttggaga gcaacccaaa tgagtacaaa tcccgattaa
    20161 aaccaaaaac tcgggattaa tggagcgaaa cttgttttgc gcatactccg gctgttgatc
    20221 caccaaagaa tcgggatccc tcagttgaga ctcatcttct ttttgtaact ggttaagcat
    20281 gtccttgctt cgtttaatta tccatactgg tttgccacgc cattcaataa tagcctgttc
    20341 accaggctcc attctactga catcaacttt gactggagca cctgctgctt gtgctttaga
    20401 gcttggtaac caggaagtaa taaaaggagt taaggcgcat gcagcgccta ccccgcctaa
    20461 gacacaggta gtatgcaaca aaaaacgacg ccgctcttca tccaattgtt cgtcttgatt
    20521 atgattactt acatcctgat tgagatcagt catttcgctc actgcttaat catcctgatt
    20581 atggtctatg aactggagcc agttcgccta atataactcc cgttagttat aacaaagaat
    20641 aacaattttt caaacggttg gataacttat ttcttagaaa ataaaaaagc ctcgtataaa
    20701 acgaggcttg gaaaaaagta atagaattag cgcttggagt actgagtagc tcggcgtgct
    20761 ttgtgcagcc ccactttctt tcgttccaca cgtcttgaat cgcgagttaa taacccacgc
    20821 gctcttagct tgcgacggaa cgaatcggga cttggctcag cgccttcggc caaaccatct
    20881 tcatcataag caaccaatgc tctggctatt cccaaacgaa cagctcctgc ttggccagat
    20941 ataccaccac cagttacagt aatgtagaca tcaaacttat taagaagatc tactgtttcc
    21001 aaaggttgca ttacaatcat gcatgatgtt tctcgacaga aatattcctg caaagttctg
    21061 tcgtttactt taatatcacc tttcccagga cgtaaaaata cacgtgcaat tgaacttttt
    21121 ctacggccgg tgccataata ttgcttcatt tcagccatta tacttattcc tcaatctcaa
    21181 gttgcttcgg ttgctgcgca gtatgtggat gttcgctgcc agcatatact ttcaacttgc
    21241 gatacatctc tctacctaac gggtttttgg gcaacatgcc ttttacagca agctcaataa
    21301 tttttgttgg atttttatcc tgtaattttt caaaggatgc cgatttgatc cctccaggaa
    21361 accctgtatg atgatgatac attttgtttt taaacttgcg accagtcaca ataacctttt
    21421 ctgcattagt gactataatg taatcgcctg tatcaacatg gggagtatac tcagctttat
    21481 gcttgccacg taaacgacga gcaatctctg tagctaagcg acccaaaact ttttcactgg
    21541 catcgacaac aaaccagtca cgcttgactt cattgccttt tgcactaaat gtcttcatta
    21601 aataaactcc gaaccgcctc aattggtaat ctttctatca tggacgggcg attttaacca
    21661 aaacagaaac aacctacaag taaaatggat aaaaaaatat atacaattaa tcaaatctca
    21721 ataaaaacat cagattaatg actaaatgtg aagtattttt tatcttattg acgtaagttc
    21781 atactgaatc aacagaaaac cccgatacta attttcatct ctttgtttca ttagaagaga
    21841 ctgggcctga ctactcgctc agaattaacc aacgcttaat tttatcaaaa gccttttcgt
    21901 gccaggaaag cacaaaaagt ttatttccct aaataattat ctgtctagca gaagtggcgc
    21961 tactatctta ccatcaatta agtggtactt gatgatttgt tcaatatctt caaaggaaga
    22021 ataagtatac caaactcctt ctggataaat aacgatgcaa ggaccagagc cacatcgtcc
    22081 aaggcatcct gatttgctga cccggatttt tccagggcca tgcaaatcaa attctaacaa
    22141 ttttgatttc ataaaatcaa aaaattcttc tccaccggaa ttagcacaac attgcttacc
    22201 cggtgctttc tgatttgtgc atatgaatac atgcttggtg taatgagaca acaaactact
    22261 ttcctatttt ttcaattttc gtttttaatt ttaaacctgg cttaaaggta acaacccttc
    22321 tggcttccac aggaatttct tcacctgttt ttggattgcg gcctggcctt tgtggtttat
    22381 ctctcaaagt aaaattacca aaaccggata atttcacatg ctgaccattt tcaagagcat
    22441 ggcgtaattc ttcaaaaaaa ttttcaacca tttctttagc aactggttta tttaatttta
    22501 attcgtcaca caacgtttct gccattattg ctttgcttag tgcgttcacg atcattccct
    22561 caaaaggatt gaaaattcat tttccagttt cttgattata gcactaattg ttaaattgat
    22621 ctcggcatca actaaagttc gagtatcgtc ttgtagtgtc atagccacag caatactttt
    22681 tttatcttct ggaatacctt tacccatata cacgtcaaag acgtcaaacg attttaacca
    22741 atcctcttta actgtatttc tgattactcg ctcaatctgc atggcactta tctgcctatc
    22801 aaccaggaaa gacaaatcgc gccttatttg tggatatttg gaaataggct tatacagagg
    22861 aatagtcgga ttgattaatg attcaagatt caactcaaac aaaaccacat cctggtcaag
    22921 atcaaaggca tccgacaagc gaggatgcag cacaccgatc cagcctgaat gcttgccgtt
    22981 aatcacaatc tgagctgact ggccggggtg aagcgcatga tgagatgatt gaataaattc
    23041 aacatcatcc agcttcaatg aagcaaacaa ggattgtaaa tcccctttta aatcataaaa
    23101 atcaaataaa cgggcagatt cactccaatt caaattgcct tgctccccca ttaacaagcc
    23161 agcaatacat gaacgctcct ttaattgccc tccgtccaga tcaaaaacca cgcctatttc
    23221 aaaaaatttc actgcggttt gttgtctgtg gctattataa atcatagatg caattaagcc
    23281 tggccacatt cccgcacgca tttgcgataa ttcagaggaa attggattaa gcagttccat
    23341 aaactctttt tgtgggtaaa gcgcttcctg caactcagga tcgacaaaac tataactgat
    23401 ggtttcatgg tagcctttgg cactaaacca cgatgaaacg tgtgtcgcaa ttttttcctt
    23461 ggcactgatt aaaccagctt gtactgatgt ttgcattggc tgagcttgta acttgtcata
    23521 gccatataaa cgaataattt cttcaaccaa atcagcatct tgttgcaaat cgactcgatg
    23581 agagggaatg gtgacctcaa aaaaatgatt agtttctttg atgatgacaa cacctagacc
    23641 ttccagtaaa tttttcattt cgtttagagg gatagacagc ccggttaact ttttcacttt
    23701 tgttgtatca aataaaaagg aaaccgtacc tggcaaaaac tttttgtcaa aagactctat
    23761 cactggccca gcttcgccac ctgagataga taaaatcaat tccgtcgctc tttcaagagc
    23821 ttttgattgc aaacaagggt ccactccccg ctcgaatcgt tgtgacgaat cactgaataa
    23881 gccatatttt ctggcaactc cggcaattgt caccggatta aaataggcgc tttccaggaa
    23941 aacatgctgt gtctgctctt gaactgcgct attagctcct cccattattc cggccatagc
    24001 caaaggcttt tctttatcgg cgattaccaa cacattgtcg tttaatacaa cttcttgacc
    24061 atccaataat tctaattgct cgcccgaaac gccataacgt acattaattt caccattaat
    24121 ttttgctaaa tcaaaagcat gcatgggttg tccaagctcg agcatgacat aattcatcac
    24181 atcgactaca gggtgcaacg ttctaatgcc gcctctacgt aagcgctcag ccatccataa
    24241 tggtgttttc gcttcaagat ttaaattacg gataattcga ccgcaatatc gggggcatgc
    24301 ctcggaatga attaaattca ctcgaagacc atcatcgatg gctggcggca ctgtaactat
    24361 gggttgctct attaagggta atttattgag aacagccact tcccgcgcga cacccaaaat
    24421 actaaagcaa tctgcgcgat tcggagtcaa atcaatatca aatacatggt catcaagggc
    24481 aagatactcg cgtaaatcca ttccaattgg tgcctcatca ctcagttcca ttatcccctc
    24541 ggaatgttct gccagtccca gttctgtcgc agaacacaac atgccctgag acaattctcc
    24601 acgcaatttg gattccttaa tttgcaaacc gccaggcaag tgtgccccaa tcatggccag
    24661 ggcaactctc aaaccaggcc tcacattagc cgcaccacaa acaattttca acggcttgtc
    24721 tttattgata ttcacttcac ataaggttaa tttatcagca tctggatgag gcttggtatc
    24781 taggacttca gcaacaatga catgagtgaa ttggccagct acaggattca ctgcgtcgac
    24841 ttccaagcca gccatggtca attgctcagc cagttcttgt tcagttaatg agaagtttac
    24901 ccattctcgt aaccataact tacttacttt catttaaagt cctcatctct gtaactgttc
    24961 atttggctca aagtttccat ccgttaattt tgctctcttt atgataatag agataaaatt
    25021 actgataact atttgcctgt atcaactaca taataaaata ttattttcag tattcatggg
    25081 aattatcccg gactacaatt tggtctaatc tgtatcattt atgtaccata tgaaagacaa
    25141 tcataaagaa acataaaaat aaaatccggg actcattatt tttataatgg ttaaaactgc
    25201 cgtaaaaaag ttaaatcatt ttcaaataac atacgcaaat catctatgcc ataataaagc
    25261 attgccaatc tgtccatacc catgccaaaa gcccatccat gatactcatt cggatcaatg
    25321 ttcactgcga ttaaaacgtt agggtggacc ataccacaac ccaatacctc aagccagcct
    25381 gtaaacttgc aagagcggca acccttacca ttacattgag tacattctat atccacttct
    25441 gcggaaggtt cggtaaaagg gaaataggaa ggtctgaatc ttaatgccaa ttcccgacca
    25501 aaaaaataag cgaagaaatc ttgcaacaaa ccctttaacc cggccaaagt ggcttgctta
    25561 tcaatgagta atccctccac ttgatgaaac ataggggtat gggttacatc cgaatcacaa
    25621 cgataaactc ggccaggagc aattaaacga aaaggtggct tacgctgctc cattgtcctg
    25681 atttgtacag gagaggtgtg tgtcctcaac aagcgtccgt ctccaaaata aaacgtatcg
    25741 tgcatcgcac gtgcaggatg atggccaggg atatttaatg cttcaaaatt ataaaattct
    25801 gtttcaattt caggaccttc aacaatatca aatcctaaac gactaaaata atcattaatt
    25861 ctatgcttta cctgagtaac aggatgtagg gaacctgtgg aatgattgcg accgggaaga
    25921 gtaacgtcga tttgctctgc tgccagcttg gctaataatt gcttttcttt caactcgatc
    25981 atttttgttt caatcaaagc actaattccc tgctttgctt gattgaccaa ttgacctacc
    26041 ttgggttttt cctctgcaga caaattagca agtcctttta gcaattcggt gagcttgcct
    26101 ttcttgccca aaaaatcaac acgaatttgt tcaagagcaa ctatatccgt ggcttgtttg
    26161 attgcttctg aagcttgttc ttgtatggtg tttataagta ccaacatagt tctacccaca
    26221 agtaaaaagg aggccttagc ctcctcaata atttttattt tacaaaccgg cttttattta
    26281 agattgctat tccgaattga gatttataaa cgaaaggcaa taacaaaaaa agcaggctga
    26341 aaattaacca gctaaagctg ctttggcttg ttctgcaata gcagcaaagg caactttatc
    26401 atgaactgcc atatcagcca ggattttcct gtccagctca atggaagctt ttttcaaacc
    26461 atcaatcaag cggctgtagg ataacccaca ttcacgagct tgagcattga tacgagtaat
    26521 ccataaagca cggaattgtc gctttttctg ccttctgtct cggtatgcgt attgaccagc
    26581 tttaattaca gcctgtttag caactcgata ggtacggcta cgggcaccat aataaccttt
    26641 ggcctggtct aaaattttct tgtgacgcgc ttttgctgtc acaccacgtt ttactcttgg
    26701 cattgttcaa tctccccgtt aactaccgtg caacatacgt tcagccaaac gcgcatcgca
    26761 tggcttcaaa gtacctgctt ctacacgcaa atgacgcttt tgcttagtag attttttagt
    26821 gaggatatga tttctgtaag cgccgcgacg tttaatcgct ccactcgctg tctttcggaa
    26881 gcgtttagct gctccacgat gtgactttaa cttcggcata acaatatact ccgcattcgt
    26941 tacttggttt ttttgggtga taataccatc agtaattgtc ttccttcacg ttttgcatgc
    27001 tgctccacta tagctacatc agccgtgtcg gcttgcaaac gttccaaaat cttcataccg
    27061 agttcttgat gagccatttc acgaccgcga aaacgcaatg tgattttgac cttatcacca
    27121 tgattgagga aacggatcag gttgcgtagc ttgacctgat aatctccatc ttccgtcgta
    27181 ggacggaatt ttaattcttt gacctgaatt tgtttttgct tctttcttgc ttcagcttgt
    27241 tttttactca gttcaaagag aaacttacca taatccataa tacgacaaac agggggtttg
    27301 gctgttggag atatttccac caaatccaat ccgctttctt ctgctgccct taacgcttct
    27361 cgcgttgata caattcctgc ctggttacca tcgacatcaa ttaagcgtac ctcaggtaca
    27421 gtgatctgtt cattaattcg tgcgcgatca ttttcacgct tagttggtgc actaatggtt
    27481 taatcctcca gttcgtttat ttatattgat cctttacgga taatttcttg cgttaaggta
    27541 tcacaaattg tatctattgt catcacaccc aggtcaatgc catctcgagt gcgaacagct
    27601 acctgacaat tttcaacctc tttatcgcca acaaccaata aataaggaat tttttgtaaa
    27661 gtatgctcgc gaattttaaa tccaatcttt tcatttctca agtcaaaatt ggcgcgaatc
    27721 cctctttttt gcaaagtttt cctcactttt tcggcatact cattctgctt ctcactaata
    27781 gtaagcacaa tcgcttgcac tggggataac cataatggca atttacctgc ataatgttcg
    27841 attaatattc ccataaatcg ttcgaaagaa cccaaaatgg ctctatgcaa catcaccggt
    27901 gtttgcttgc ttccatcttc agcaacatag cttgcttcaa ggcgtgcagg catagagaaa
    27961 tccacttgaa tcgttccgca ctgccaaatt ctacctaaac aatcagagag agagcattca
    28021 attttaggtc cataaaatgc tccttctcca ggcgcatcca cccactcaat atttcttccc
    28081 tgcatagcca gtttaagggc ggtttccgcc ttatcccaaa cgtcatctga accgactcgt
    28141 ttttcagggc gcaaagccaa tcggtatttt atttcagtaa acccaaagtc cttatatacg
    28201 gattgcacta actccagcat catagccact tcagattgaa tctgatcctc agtgcaaaaa
    28261 atatgagcat catcctgcac catattgcgt acccgcatca acccatgcag cgcgcctgat
    28321 ggctcacagc gatgacaatt tccaaactca gatagtctga gaggaagatc ccggtaactt
    28381 ttcaaaccat gattataaat ttgaacgtgg cagggacagc tcataggttt tactgcataa
    28441 tgtcgattct ctgtttcggt aacaaacatt tcatctctaa agttcgccca atgacctgat
    28501 ttctcccata acgatctgtc tactaattgc ggtgttctaa tttcctgata gccaaaatcg
    28561 accaggcgat ttcgcatgta atgctctagc tcttgataaa tagtccatcc tttggggtgc
    28621 caaaaaacca ttcccggagc aatatcctgg aaatgaaaca aatccagtgc cttgcctaat
    28681 ttacgatgat cacgtttttc tgcttcttcc aaacgaaaca aatattcttc cagggatttt
    28741 ttatcagccc aggcagtgcc gtaaattcgc tgcaacattt cgttatttga gtcaccacgc
    28801 caataagcgc cagctacttt tgtcaattta aatgctttta aaaacccagt ggaggggaca
    28861 tgtggacctc gacacaaatc ttcaaaatca ccttgcctat atagagagag cgcttcattt
    28921 tcgggtatat cagcaataat ttttgcctta tattcttcgc ctaaatcctt aaaatattgt
    28981 attgcttcat ttctaggtaa ttctcgacga gtgatcgaaa gattagcctt tgccagctca
    29041 tgcatcttcg cttcgattaa actcaaatca tcgggagtaa acgagcgctc aaaagcaaaa
    29101 tcataataaa acccgtcttc tattacagga cctatagtca cttgagcgga tggaaataag
    29161 gcttttacag cctgagctaa taaatgagcg gtagaatgcc tgattatttc aagactgtct
    29221 tcatgtttct cggttacgat aatcaaagag cagtcttctt ttataagata ggatgtatcc
    29281 accaagacgc catcgacacg gcctgctatc gctgctttag ctaatccagg gctaatgtga
    29341 tgtgccacat cataaatagt gagtggcgct tcaaaatgtt ttacatttcc atctggtaat
    29401 ttaacatttg gcataatctt atccgtcttt ccatctttca ggttcttgtt aaaaaaaaac
    29461 cctgcatggc agggttcaaa cctttaataa ttcagtgcag tagtttacca atttagggat
    29521 tctactagaa atccaggaat tatggtaggc acgagtggga tcgaaccacc gaccaccacc
    29581 atgtcaaggt ggtgctctac cactgagcta cgtgcctata attcaacctg aatgaaaatt
    29641 ggcatgaatt atacacataa gattcatgga aatgcaatca tccaaatcat atcattttta
    29701 tctaatgaaa aagcaagata acatgacatt aaaattttgg atgagcatgg cctatcaatc
    29761 ttgcctttta actcttttgc aaatgcaacc cttctcaact aaaccgcaaa acactcttgc
    29821 tttccccaaa atgcattagt gaaagaataa agagcacgaa aagctaattc caactctctt
    29881 gggaacaagg taaaatgata aagcgtccgt tagcatttaa aacattatgt ggtttaaaat
    29941 catacattcc catgtagaaa tagctattta tgccaaaccg aacgccaaga aatcaaaact
    30001 catggccatt tctgatgaca ggctgcatat tgcgctccat gccaaaccgc aagaagggga
    30061 agcgaataat gagcttttat tctttatatc ccaatttttc aaaattccaa aaacacaaat
    30121 cgagctaatt aaaggaaaaa gcagccgtca taagctaata agattaccct tatcagaatc
    30181 tgttttctgc tttctaaata atccaaaaat ctagaacata tcacccttta aaacttagaa
    30241 atggcccgaa tgaaggggtt cattcaagcc atgcaatgcg aggttaaccg ctatggttaa
    30301 accacttgga ctacccggtg atacttgttc cttcaagtaa catcagcgtc cgatatttgg
    30361 acttaaagaa acgtgttata acgtttcaat acccattata atcatttaac accaaaaatc
    30421 aaccaatgat ttccagtaga aacaatttgt ttccatttaa tggatatatt tgcaggttta
    30481 actacccttt gctacacttt tgtcactttt taatatctta aaattattac tccaatatgg
    30541 aaaaagttaa cttgacaaaa cagtttgctt accgcttgcg tgatgccatg attgcagcag
    30601 ggcataattc tcaacgctct ccatcaggag tatgtattca taaattagct gaaatgacag
    30661 gttactcttt gcaaatatgc agaaaatacc ttcgtggaga ggtcattccc gatccagtca
    30721 agctgataga aattgcatcg aaactaaatg tttcaccagg atggcttctg tttggtgaaa
    30781 cccataatga tcctggaaca tctaaggaac acatcacgat aagcaaaagt ttactccatc
    30841 atatttttac aaaagcagct tgtctatata accgtgagct tgtggaagat gatgtgtctg
    30901 actttttgat ggatttgatt aatgacatta gtctcatcaa tgccaccgaa gaacagtcca
    30961 aaaaaataat tgatttggct atctcttcag tgagccattt tagacactcg caaagaacgt
    31021 agagtaagaa actttcatgg aaaatagccc aaaagagata gtgctccact ctcaactttt
    31081 agagaacttt ttcgccttta aaagtaaagt atccaatgtc tttagagacg tattgggcat
    31141 atatgacttt cattcatatt tccttaatgc gtattacagg acacaatcaa ttgctgcccc
    31201 tatcctctac tcctgccatg gaatgtaact tatttaacag ttttctttag caacatgagc
    31261 taacctataa tcccaagtga tttaaattat gtactcaagg cgattggcac acactttaat
    31321 aatgtaaaac actatgatga gctatattat cttgaccaaa ttaaacatgg ttttcccatc
    31381 gctttctccc ttgctaccaa gataaatgaa aattatgtga tttattcaat agcaagccac
    31441 aaatcttatg cctttactcg tgagttattt tctactcatc aagaagattt ttaaaaaaca
    31501 gggccatatt gctccaattt gctgcatcca ttttttagtt attatgaaga ttttccttct
    31561 caatatttaa ttttaaactc acactgaata ataagaatcc accccgactt tataatgaat
    31621 tacttgattt ttaaagagct cgataatcta cgtacgtacc tcaatttttt cgaagcattt
    31681 tgtgcgcatt ttatgtctat ctctaaaact cagtgcttca tagagagtcg gtcatttgcc
    31741 cagagacgcc tgattaggaa tagaaatatt ctggtctaca ctcagcgaac ctgatactgc
    31801 ttttggtttc ccgagcaagc tcagttttat taaactctcc ttaattttac aatcgagaat
    31861 atctgttgcc aattcaagtg acgtcttagg gattttgtgt tttaaagtgt attcatccga
    31921 atccagcact ttataccttg atatattgcg aagaaggctt tcacttgctg ttttatccac
    31981 attggtgtgt ctattttcag tcaaaaactg gaaggccttg ttaatttgct cttcctcacc
    32041 cactcttgag tattttccac acagagtatc caggttatac acataagtta atgggctttg
    32101 aaaaggatca tgcccatgaa catacgtgac aaaatagcca ttgtattttc ctggtcgagc
    32161 attctctact tctttgcttt cattccagcg attccatact aaataaatta acggcgatgc
    32221 gtttctctct tcatcagtca tattggttgg atcgttaatt tcattattct caaataacaa
    32281 atgcagcatg ttgttcttca tataaatttg caattgggca ttaagttggt ctatggtttc
    32341 agccaatgct tctttggtgg aatcattata agtgacaccc aactgagacg ctgccattcg
    32401 aatgctatca aagcgtatgg gagcatggct atacaaggta ataccatcct cgcttagaga
    32461 gtaatcaata atttttaaag ttggtttata agctctctca actaaacttc tcaattcctc
    32521 ctcagtaatg acactttgct ccagtaataa ttggagaccc cagaatgatt taatttgtat
    32581 atccccaata taacctttgg gtttaaatgg ttgaccgact acaagttttt cataagcatg
    32641 aataaactcg tacccatgat tggataaaat gatcttgatt gcaatctgat tttgataaag
    32701 gaagtccagt attcttaaag tgaaataatc acaactcccc cgatcggcca cctcatcacc
    32761 cagcaatcga ataagcgttt taatatcatt aatttctatc tgcgtcatga acttattaaa
    32821 tcgctcaata catgatggca gccttgtttt caacccactt aatttttctt ccaggccagc
    32881 tttactcttt tcagccattt gtaaattggc ctctattggc ttcttaagtt gcaataatga
    32941 ttgagaaaac tctttctgat ggtctgtcgc aagtgataat ttttgctcaa tgtctaaaat
    33001 tctttgctgt gcgttagtta tttttatttg tatcaattga agaagcgtac gaatttccaa
    33061 atattcttga accatatcgt catattgttc ataaattgtt acaaattgct ggtaagcttc
    33121 gtggaaattg ataatttctg ttttaaattt aattatttta tgacggaaaa gaaaatggat
    33181 aagcttgatt gcattgccat gcaagtcgcc cagtgaaatg gaacctaaat tatcttcgaa
    33241 ttcattagga taattgtata tatcgatatt cttgttaatg agacgttttg gcattcccta
    33301 gtccatgtaa aaaactcccc ttcaaaataa gggcatactc aaagtcgaca ataacaaata
    33361 ttcacttttc atgtaataac atggaagtat taaattcata caatgaactc ccactttaat
    33421 taccctggaa tagcagcaaa caagctaaat tattgaacaa tttttatggg tttggggaaa
    33481 catgaatctt catatctatt cccattaaac aatcatctaa ccaaaaaacc tatctgctat
    33541 acttaaacaa ggaaaataat agtcagagaa aggaatgaga ttattatctt ttaaaaaatc
    33601 caaaattgtt tcaattggaa ctgaattgga gtttcagatt attgattgca gttcattgtc
    33661 tctggtttct cgttcaaaag aattgatgag agccttaaaa gacatgcgct atcgcgacca
    33721 aattaagcca gaaattacgc aaagcatgat tgaaatcaat tcatcaattc atcaatccgc
    33781 taaagaaatg tatgacgaac tgttagagct acaaaaaatt ttagtagaaa ctgctgcaag
    33841 cattgatatt gctttttgcg gcggagggac acacccattt caacaatgga ccatgcaaaa
    33901 aatttttcca tcgaaacgat tcaaaaaaaa atttaaccaa taccgttatc tcagcaagcg
    33961 cgctactgtt tttggacaac atattcatat cggctgccca acaggagacg atgctattta
    34021 tttaactcat gccttggcaa gatatgtccc tcactttatt gcaatcagcg cttcatcgcc
    34081 tttctatctg ggtattaata caaattattg ctcatcacgc tcgactattt ttaatgcttt
    34141 tccattaagt ggtgtcattc cctatctgag aaattggcaa gaattctctg attattatcg
    34201 caaaatgtat cgttggaaaa tcattgaaaa tatgaaagac ttttattggg acattagacc
    34261 aaaaccagaa cttggtacaa tagaaataag agtctgcgac acccctttaa ctcttagaaa
    34321 atcgattctt attactgctt atattcaagc attggcactc tatctcctcg aagaaaaatc
    34381 tgtccagctg tctcatgatt tatactatgt ctataattac aaccggttcc aagccagcag
    34441 acatggtctg gaaggagaat taactgtcac tgataaagac agacccatac ctatcatgga
    34501 tgacattctt gaaacaataa aaaaaattga acaatacatt aatggacttg gaaacagcga
    34561 atatattgag gaactgtata gtgacgtcat caataaacaa aatgatagcg ttctcataaa
    34621 taaaatttat aaacaagatg gctcatttag caagctggta gcagcacaat gcgaactatg
    34681 gttaagtgat tcaaaggata ggaaatggat gacacaacct tcttaagtac gaaagaaaaa
    34741 atcctggaaa tcaaaccatt aatggaaagt gctttcggca atattctagg gtatcaagaa
    34801 ctggagaata tgttggcaat ctgtacactt gtaccatttt ccaacaatca aatcttgttt
    34861 catcaagggg atagaataaa aggcatttac atcattataa aaggaactgt tgatcttatt
    34921 gccagaacct taggcaaagg aataaccaag atagaaactt gtcttgccag tgattttttg
    34981 ggagaaacct cctttctcct caatgagccc agtgccacat cagcggttgc taaggacaat
    35041 gtgacatgct tatttatccc ttctgcctat tttgaactga tgccggcatt ttcacctgag
    35101 gccaaataca aaatcatgaa agcaattggt tatcaggcct gtggtcgttt aaaacaatta
    35161 cacgacaaaa ttattgattt tatttctcat tctgatatgc aaagcttatc ttttttgggg
    35221 cgagtcattc agactttcac acaacctaaa atacacaccc tggatgagag tggagttgat
    35281 aaagaccaaa tttataaaaa gactttattt aactctttta ctcaagatga aaccgatgaa
    35341 ttgcttgaac acgcgatacc actaactgcc aataaaaatt gcgtattgat tcacgagaat
    35401 gaaaccatac cggtatgtta tatagtgatc tatggggcgg ttcagtccaa tgtcatacaa
    35461 aacagtaaaa ttgccaaatt gtctgttatt ggtcctgact cgttgtttgc cagtacggcc
    35521 tgttttctga gtgacactaa attttcaatt acatttatta cctgcgaatc agcaacttta
    35581 ttaaaaatat ctgaagccga acttcaatat ttccaaaaaa ataaacccat gatctggtac
    35641 aaattattta atttgatatg tggatctatc atttcccttg ctcgttcctt aaaaaaattg
    35701 gacgtgcgac tgaacataga aaaatataat cagtgaggta ctatgtgcag aatattgtct
    35761 taccttgggc aacccacagt agttgaagag ttactttata aaccggataa ctcctttatt
    35821 aaacagagtt atcatcccaa atatttgcct tatttattaa atctggcggg ttttggtatg
    35881 gctgcttggg atagaaattc aattaacccc ttacaagctt atgtctataa aacatccaaa
    35941 cttccttttt acgatgaaaa tttacataat ttagcagaaa aaatagcacc tcactgtctt
    36001 ctcgcccatc tacgaggggt gtcctatcat gataagcaag tagttactga tcaaaacgtg
    36061 catccatttc tctatcccgt aaccagtatt gctttagcac acaatggtat gctccataac
    36121 tttgaaacca tgcgctatga tctgctgaaa tatgttaaaa cggaatacag aaaatatatt
    36181 aaaggaacta cagatagtga gtggatctat gctgtttttc tttctcaatt agaaaatccc
    36241 aagggtcatt ttgatgcctc tgaaatcata aatgctgtaa ttgccacttt aaaaatttta
    36301 aaaacggtac gccaacaaaa caacatagtc attaactcac cagttaatct ttttttaacc
    36361 aatggtgatt ttattgccgc gactcgattt tgtttggatt acggctggaa acccaaagac
    36421 gctactcaat cgacacattt cacctatcat tcactatggt acacttatgg agaacgatat
    36481 ggattttatg aaaatgaata taaaatgaaa gggggaacca ttaattcaag cattattatt
    36541 gcgtctgagc cattaactga aaacacaaca acctggcttg aggtccccga atatactttg
    36601 atttttgcga atcaagtcga tggtgaaatc aaaattactt cccaggatat taacatttga
    36661 aatgctccat atttagcatc ccaagacgct ttctcatcat ctccttgtgc ctttctcatc
    36721 acttcattcc aaaattttcc ggtaatacag aaagcaagaa aggtaattga atgccccgct
    36781 caagtgccta aaacaaggtg tccaacattc tgttttcata aggtagaaaa tcggcattcc
    36841 acttgatacg attcattaaa tcgggattag caataaatgg ccttcccaaa gcaattaaat
    36901 cgtatttttt attttgaata tcttttcttg cctggtgaag cgtatagcta ccgctggcaa
    36961 ttaaggttcc tttaaaatga gctctcataa attctgtcat cgttttgaac cctaattctt
    37021 tgaattgaat accgtcatca aaattacctg tatgcacata agctattcca tagtgattca
    37081 attcttccaa tacatatcga aataccatgg catctcgctc atctccgaca atttcattaa
    37141 gataagctcc gggagaaagg cgcaatccta cagattgccc acctatttca ttgatacagg
    37201 cttttaccac ttccagcgca aatcgcccca tattctctgg atattgtcca tactgatcat
    37261 gacgttgatt ggtatggtaa tgtaaaaact gatcaatcaa ataaccattg gcaccatgaa
    37321 tctcaatgcc atcaaacccg gctatcatcg ctcttcttgc agccaacgca tagttttgga
    37381 ttaactcatt aatttcctct aatgtagccg cccttgattt tccataataa agatcatcgg
    37441 cacgccggac cttacctgtc atcatcgttt ctgaagcaga aatcggtaag ttaccatgta
    37501 aaaaaatcgg atgagatacc ctgccaacat gccaaatttg caaaaatatt ttccctcccc
    37561 gttcatgcac agcatcagtt accattttcc aaccgtcaat atgggtttgc gtaaatattc
    37621 ctggagcatt gctataaccc tgaccatcag ggctaataat agtgccttct gtaataatca
    37681 acccggcatc agcccttcga gcataataat ctgccatctg cctggttgga ctgaaatcat
    37741 cgttagccat attacgagtc ataggagcca taatgactct gttttttagt gtaattttat
    37801 cattaagctg ataaggactt aaaattaaat cggagttaac catgataaat ctcctgcatg
    37861 tcataacaat acattggaat atcgcaaata ttcgatttat tcaagcaaaa ttttttaaat
    37921 cataactttc aattcattta taaattcatt aattaggctt gcattcgcct tacaataggt
    37981 ccactgtcct ctacgctcag tgaatatcaa accagcttgc tgtaattgtg ataaatattg
    38041 agataccgtg gattgagata agcctgattt tttttctatt aagccaacac aaacaccatc
    38101 tttgctcaca tcacagtgcg acgaactgaa atgtttatct ggctctttta gccatctgat
    38161 tatctgtagt cgcttttcat tagaaagcgc ttttaatata tttattacgt tcatatttta
    38221 attatatcgt tttattgcga tatgtcaatt tagtgattac ccatggtcat gtgtgttgaa
    38281 atttcaaata acctgcccga taccaacact aaaaataaga cgaatgagag agataaatgc
    38341 tcaatatggg tattttgaat attacccctg aaacagttcg tgcgacaaat agtattgcag
    38401 aagagcttgt tgatttaact attttacact ctcaaaattt attttaagag cctttaaaat
    38461 ctattttcat tcaggcaatt tatcaaaact tttcatgacg gattcattaa actctttcat
    38521 tacatcactt tcataaaaat cttttttaaa ttcttcatcc tgaatatcaa ccattttaac
    38581 caatgcgtcc aagctcttga ttgcttcatt tatttcttca gataattttg ataatttttg
    38641 aaaataaact tctttatcat ccccattata agatgaagga tcatttattt tcatatcgac
    38701 ttcgcttttc atttccctga gctttctatc caattgaatg atactctggg gcgtatttgc
    38761 atcaaaatga gttaattctt cttgcgattg attatcgatc gtattattca tcaatttgct
    38821 cctgccaaaa taattaaaac cttactatta aattctagtc gaagtacagc atttcttcat
    38881 ttgtactatt agtgctatca ttgtcttttt aaatagcagc aaatcatatg ttacttcatt
    38941 atctttttat tgtggggatt tgtgtagagg cgattacagg agccctggca gcaggacgta
    39001 aaaaaatgga tttttttggg gtgctactta ttgcgtcaat cactgcactg ggaggaggga
    39061 ctgtaaggga tacattattt aacacctatc cactgacctg ggtagctcac ccggaatatc
    39121 ttttatatac ctcagtatgc gcttttctaa ctatttttat tgctcattca ctggttagaa
    39181 taatgaaagt attcttaatt cttgatgccc ttggtctctc aacttttgtt attattggta
    39241 cacaaaaagt tctcgcccat ggtatgccac caagtgttgc agtaatcagt ggaatgatta
    39301 ccgggatttg cgggggaatg ttgcgagata ttttatgtaa tgacattcct ctggttttaa
    39361 gaaaagaatt atatgctgtt attgccctgg ctggtgcgct tctgtttata acattagact
    39421 attttcatat ccctcataat ttaaatatca ttatcacttt gttatgcatt tttaccgcac
    39481 gcttattggc tatttttttt catattgaaa ttccaatttt tgattactca gagagtataa
    39541 agaggagaaa aaaataacgt tttttttcac taaaacactt aaataatgat gttaatctct
    39601 tagagatacc ccatgatatt ttgcctctga aaaatggcac gctgttttgc aaatgcggct
    39661 tcctgcatgt ataaggaaga tccctcttcc tactggggat gaaattaaag aaaatatact
    39721 tttgccatga aaaacctatg ctatttcagc catatatttt ctcgctaagc caattctcta
    39781 acctcaatga tgcttatttc ttctacaggg acatctgcat gaccatttcg ttggcctgtt
    39841 ttcactttag caatagcatc aaccacatcc atcccttcaa ctacttctcc aaatacgcag
    39901 taaccgtaac cttgaggatg gtcgccactg taattcagaa aaccattatc tgcaacatta
    39961 ataaaaaatt gggctgttgc agaatgggga tccattgtcc tcgccattgc gatggttcca
    40021 cgtttattag gtttcgctcc ttttgcttca ttttgaattg gagaggcagt tgttttttgc
    40081 tccatatttg tattcaaacc gccgccttga atcataaaac catcgataac acgatgaaaa
    40141 atcgtgtcat tataaaaacc tttacgcaca taatttagga agttttctgc agttaatggg
    40201 gtattttctg tatctaattt gatatgaata tcacccatgg atgtagaaat taaaaccatt
    40261 atttcacctc ttaatattaa ataatttagg aatttattat caaatgacgc atgtgattac
    40321 aaacatcatg caaaacatga acattatgga tgcttgccaa agcagtaaat aaattagctt
    40381 tttgttttga taaatgatgc aaataggatc ttgaataatt aagacaagta taacaagaac
    40441 aactctccat aacaggtgcc aaatcatcag caaaacatga tttctttatt tgaattcgtc
    40501 cattttcatg ttcgctttga aattttagcc aattcccttc tcttaccaat ttaccacaat
    40561 ataaggcacc atgtcgggca ttacgtgttg gtgcaacaca atcaaacata tcgatacctt
    40621 ccgccaccac atccaacaga tcttgaggtg acattccaac tcccatagta taacgtggct
    40681 tattgcccgg aagatactca tacacccaac gaatgacttc cactgtagta tccatatcaa
    40741 agcctacagt ttctccacct attgcaatac catccgtatt cattgcagaa acaaaatcag
    40801 cactttctcg acgtaaatct tgaaaaactc ctccttgcac aatgccaaat aaagcttgtt
    40861 tatatccgta tcgagagttg ggatattgtt gatggtagtc aatcgattgt tttagccatc
    40921 tgtgggtccg caacatgatt tgacttactt catccttgga gcagctgtca ggagtacact
    40981 gatcaaatgc cattataata tcggcaccaa ttattttctg ggtctccaga gacatttccg
    41041 gggtcatatg gataatcccc ttactgccag gcaatttaaa atgagcacca gattcatcta
    41101 tagaacaaat ttccttgttc ttcgataaac taaaaacttg aaaaccaccg ctgtctgtta
    41161 gcataggtcc atgccacccc ataaagcgat gcatcccccc tgcattttct atcaccttca
    41221 tgccaggcgc acacaacata tgataggtat taccgcccag aataatttga gtacccgcag
    41281 cagacagttc tgacggcatc atgttattga cccctgcacg ggttccaact ggcataaata
    41341 ccggagttat aaattcacca tgaggcgtaa ccacacgtgt aacacgagct ttggtacccg
    41401 aatgctggta cagtacttca catgaaaaag tgttcattcg cagaaacggc aagataaaac
    41461 aaagaatgat aacgaaagca cgcgtttaat gccaggaatt aattgatcgt tcgggttcga
    41521 aaaaacagaa aaagccccat tatcgccata aacagaaaat acatggcagc ccacccaggc
    41581 atagaaattc caaacatagt ccaggtcact tcagcacaat cccctgctcc ccaaaatagg
    41641 gctttagcaa cagtttgcca tggaaaatac tgaattaata catcaagccc aggcatgcaa
    41701 gcaggagctt gatctgacgg taaagattgc aaccacaatt gccttaaaga gaaatacaaa
    41761 ccggcacacg caaccagaaa ctgcatcaag cttactatat gcgctttttt caaggttccc
    41821 agagacaacc ccattaaccc taacaaaata aatacacaaa ttcgctgcat caagcacaaa
    41881 ggacatggtt gtagtccaac agcatattca aggtaaaacg aagcgaatat taccaataaa
    41941 gtaataatta cctgaaaaga ttgtattttt ctgtaagtaa gctttttcat gatttcggca
    42001 acatatattg tatcgcggct tttaattcag catcagaaca gtccatacaa gtaccttttg
    42061 ctggcatggc attcaacccc ttgattgcag aagcgagtaa atcatctatt ttcttacttg
    42121 ccaaacgagg tttccaatcg gcctccgatt gaaacttggg cgcccctgcc aatccatctc
    42181 tatgacatac ggagcaatat ttatcatata tatcttggcc tggttctttt ttgctcttgg
    42241 aatcaacaac agtcgtttta gtcgctccag cttctatgtt attcccctgc tcctcttgaa
    42301 ctcgaacttt cccaaccggt tgaattcttt gtaaaatttg ttgctcatcc acctcgtcca
    42361 ttgcaaaaag catgattgaa aaaaaagaca agatcagcgc aatattcaac ctcatattta
    42421 tccgtcctct aatagttaat ttaaaaatca taccgacaag tgactttttt ttccagaaag
    42481 atttcaatag gcccaatgat ttataaaatc attagctgaa tacttagact tttactgaaa
    42541 agatccttcc actatcagcc attgtgctaa actgcacaca agggaaaaga atctgagtta
    42601 tggatgagca atacagaata ccaaacaatt gataacaaga ctcaatatat caatggaaaa
    42661 gaaaaacatc aaaaccatgc ttatcctgag tacatcaatc attccatgga aaaatattac
    42721 gagggacgag tcaataaatc ctggcaaggg aaacacatac ttaaaggcaa aaccccgact
    42781 gcaaattcac tgattttttc gagcaatgat tatttaaaca tcagtcaaca tccgcaatta
    42841 attaaagcgc aaattgctgc gatgcaaaaa tatggtaatg gtcaaatgca atctgctgta
    42901 tttttaaata acagctcttt tttgctcagc caatgtgaaa agaaattcag ttccttttta
    42961 aattattctg cggccctgct cactcaatca ggctggagcg ctaacgttgg tctcatacaa
    43021 accctggcca agtacaatac accagtgtat ctggattttt atgcccatat gtctttttgg
    43081 tctggtgtaa aagcagcaag agccaaatct ataccgtttc tacataattc agtcgattca
    43141 ctaaaaaaac gaattgagca ccatgggcca ggaataattg cagtagattc tatttatagt
    43201 acgctgggta cgattagtcc attggctgac tatgctgaca ttgcaagaaa attcaaatgt
    43261 ttgctcatcg tcgatgaatc tcattcatta ggtacgcatg gttcgcaagg caaggggatg
    43321 gtggctaaac tgggattatc aagccaaata gacatcataa cagcaagcct ggctaaagcc
    43381 ttatcaggac ggggaggcat cattacagga gataggcaac ttatagaata tatcagatat
    43441 tcatctctac cctctatttt tagttctgct ttaatgcctc atgatttagc aggatttagc
    43501 gcatcattag aaattattac tcaagaagaa tggagaagag caaaattaca aaccaatgct
    43561 gattttttac gagaagcctt atcatgcgaa ggaattaata taggaagtag tggctctcaa
    43621 atagtccctt tagttacagg cagcgaggct aacacgcttt ggttaaggga tgagctagaa
    43681 aaagaagaca tctttggagc cgtgttctgt tcacccgcca ctcccaaaaa taaatgcctg
    43741 attcgtttat ccatcagcgc gcatcacgaa aaatcggact tgctcagagt gattgagtgc
    43801 ctggtcagac ttgcaagaaa aagacccgat attcctttgt ttaagggtaa ttaacacgac
    43861 ttctaattat tggcggctca tttgaacagt taacatttca aataagaatt atgtgctctt
    43921 tatatagaat tcctattaat tcagaaacat ttcctctgca tctaactctt ccaggtattg
    43981 gtgataagaa agaattttat ccaggcgcac atcgaacaaa acagcccctt gcacataagc
    44041 ataaaaatag gtttcatcag aaacaaatcg gttggcagga accaaacaat tcgaccattc
    44101 attccattga ggtgtcacta aattagattg ccaaaaacaa ggaatttttt ctccattatg
    44161 caattggtcc aatacatctc cactagctcc attatccaaa gccaaatcat agtgtaactg
    44221 catatccgct tcgtttttca cgattaaaaa actgatgttg gcatcatcat ccagcatcaa
    44281 aaagctacct gagttatcgg ccagataaaa ttcaacgatt cccttttccc tgcataaacg
    44341 ccagaataac tcagcatatt ttttgtcatg taaacaattt ggcgatgtca ccgaaagcat
    44401 gcgtacaatc atatcagaca tgctttgaaa atattgtaac tgcaggtcat ggatgctttg
    44461 agtaatgaga ctggcgacat ccggatcact ctttttgatg tatctatgaa ttaatccctc
    44521 attaaaagca gcgattgcca gcttctcatc tgcttgccca gttaataata tttttttaat
    44581 attagtatct tcgattcgcc tgcaaaactc taatccatcc atacccggca ttgcataatc
    44641 aacaacgact actgaaattt cagaaaatcg tcgagagtta taaacctcgg catgaatagc
    44701 agccaaatca agattaatgg tatgattagt tagtgggcaa ttttttgctt ctgtgtattc
    44761 actgagacaa cgttcactta ataattccag ttcacagcgt ttttgtttaa tacaatctaa
    44821 agcttcaaaa ggggaatcaa atacacggta cgccaaaccc tcatccagct gcaatacgaa
    44881 attgagcaag aaatcccgac tgtcgtcgac aaaaaccgca gtgcttggaa agtaacaggt
    44941 aggtattgag aaatgttgca tggctcctcc tgagcaaaac gttccaaagt tatatccttt
    45001 ctatgaactt caaataacct gtggctccat catcagaacc tggctaactt gtgaataaag
    45061 taacatgatt gtttattata accaaattat ttaggtttta tattcaccgg gctttttgga
    45121 gtaagtattc aaaataagcg ctcttaaaat caaagctcaa aattagacaa gttattgaat
    45181 ataagtctat attattaaat aagtacctta tcttagctaa gaaatcaaaa aaggatattg
    45241 atatggctaa ttcacaagaa tttaaccaac ccccagtgga tgagttaaaa cgaaactggg
    45301 gatggatttt aggatttgga atatttttcc ttatccttgg ctgtgttggt cttggaatgg
    45361 tagttggtct aaccttggta agtatgttct ttttcggtgc cttattaatt gttgggggaa
    45421 taagtcacat tatagacgta tttaaataca aagagtggaa aggaatgata tggcaggcgc
    45481 ttattgcagt gttgtatatt gcagcgggat gcattgtttt gtatgacccg tttttagcat
    45541 ctactctaat cacagctttt ctggcagcgg tgcttattgt aattggttta acaagaatga
    45601 ttatggcttt tgccttaaaa gattccacag gatggggatg gttgttattg gccggaatca
    45661 ccgccattat tcttgggata ttaattctaa tgcaatggcc agttagcggg ctgtggatca
    45721 ttgggctttt tatcgcgatt gaattgatcg tcactggttg gacatatatt tttatcgcta
    45781 tctcagtaaa aacggccaaa ctctagcaga agagaatcac aggagctctc taactcaata
    45841 ccatccttac gtcttttaag acgaatgatg gtatgttcaa cagaaaacca attttaaacc
    45901 gagcctggaa aactcagtat aaacaaagcg tattcgccct ctttagattc acaaacaata
    45961 tcaccaccaa acgcattcat aactaattta caaaatgata aaccaatgcc tgttcccata
    46021 aaggtagtag tatagaaatg attaaataat cgatttaatt gttgtttgct catccctttt
    46081 gctgtgtctt taaaatacaa ataatgatac ttatcgccag attcagtcca aatattaatc
    46141 tccccacgct gtgccattgc gataacataa agtgcatttt ttattaaatt aaataaaata
    46201 tgctgcatta acaacttaga gcctttaaat tgaaaatcac cagtccatgt gattaatgtt
    46261 ctttctcttg gtgactgaaa tgggtatctg gtaatagcct cagacaaaca ttctgctata
    46321 gaacaagtct ctaatatgca attttgcaaa atattatcgc gacttgcctt gactaataac
    46381 atatcaatga tcgtattagc ataatcaatt tcactaacaa ttcgattgct gactccccca
    46441 agctgtaata acaatctgtc acgtaaaggt gaggatatta actcttgttt tttagccaat
    46501 tggtaaccat caatcaatct tggcaaatat tggactaaag cttgagcgcc gctctttatt
    46561 cctaacaatg gtgaacgcaa ttcatgggca atcatgcctg cagcagcagc catgccagcc
    46621 aatttttgtt gttgcaacat ggctgtttta taatttaaag tagaacctgc aataatggta
    46681 aatatgatca ccaatgtcat ttgtatatgc tcttctccaa aatacatttg cggagaaaca
    46741 agataataac ttacaagggc taaactaaac cccagtatca acacaatgga taaactcaat
    46801 aaatcaacga gcaatacaag taaaaataca ccacacaaca aagacatcgc agaaataacg
    46861 cttgcttgat tcattaaaaa taaaaaagta aaaaaatatg gcaaagtaaa caaaagagtt
    46921 aaaaaccaat accaagataa atattgcttc cattttaatg gccaataagg agtaagcatc
    46981 aatcccaaac ctaaaaggct tccaataaga cggagtggca ggttttcata aggctgaggc
    47041 aaccagaaag cccaaataac ataaaataaa ggaaatccca caaaagctat cgcgcctact
    47101 gcaaccaatt gatgagcaga attagacaaa ctacgctgca ttgattcatc taaatgtttc
    47161 actatttttt ttagttgtga catttcttat ccttaaatcc agctaaaaaa cgcccctgat
    47221 tttcagcgct ttatctacca gaaaagccta tcataaaata tagggattgt gcatgggata
    47281 tgctctatag gacttacaca aagctccaag gtcgaggaaa aaaaaatttt taataaggag
    47341 cttagataag ctatagttat ttgattgtta aatgactata aatgacagga ttaaaaaatt
    47401 ttttagcaaa gaaattgggg gttggcacta taaaccaatt ctcaaaccgg taggaatgct
    47461 catttataaa tcaattgccc gacaagattt gcgtacctat tatctcaatg gggttctttt
    47521 taaattagaa tcaatgttat gatctttacc caaagaacat ataccgtcta ttccatgagc
    47581 gcaaaaatta tacgaatcgc aacgaggcag agcccgcttg cactatggca ggctaatcat
    47641 gtacgggaaa tgcttgtaaa gcaatggcca aatctaagca ttgaattatt acccatgata
    47701 acctctggcg atcggtttct taaagataaa ttattatccg caggagggaa agggttattt
    47761 gttaaagagt tagaagaagc attattggat aaaagagcgg acttggctgt tcattcgact
    47821 aaagacatgc cagcacaact tccggatggc ctcttgttga ccgccatttg caaaagagat
    47881 aacccttttg acgctttaat aagtccccaa tttaaaagtc ttgctgctct ccccaaaaac
    47941 gcgattattg gtacatcaag ccttagacgt caatctcaac tattggctta caatcccaat
    48001 ttgcaaatca aaacattaag aggaaacatc catacaagac tcagcaaact ggagtcagga
    48061 gagtatcaag ccattattct tgctgccgca ggcttggaaa gaatgggctt ggcacatcac
    48121 atcacccaac tcatacccga tgacattatg ctgcctactt gtgctcaggg cgctttatgt
    48181 attgagtgcc gaactgacga tttggaaatc caggagctgg ttcatggctt aaatgatcca
    48241 atttctgctc tttgtgtcca tactgagcga cgcgtcaacg caaaattagg aggcaattgc
    48301 catataccct ttgctgttta ttgtaccatt actgaggaga aactcctcct tttgagagca
    48361 aaagtactta atatggatgg ttctcaaatg attgatgatg agcaacaagg gaaaattgca
    48421 gaagctgaag tcattgcaga caggtgtacc gagtcattaa tgactaaagg tgcaatgtcc
    48481 ttattaagta cgataccatc atgaccaaat cacttaatgg tcttcgcata ttaaacacca
    48541 gacccaggga gcaagcacaa gtgcttaata aaaaaattat cgagtctggc ggaataccca
    48601 tcgactgccc cacgatggaa ataatggcgt ctgaaaccaa ttggataaat aatttgcctg
    48661 atttgacctc agtaaatcag gccatttttg tcagtacaaa tgccgttcgt tatttcatga
    48721 tggaactggc ttccaaaaac atcaattggc caaatagcat ccgggtaact gctataggta
    48781 aaggcacctc cagagtactc aatgaattca atatccaggt tagtgatgtc cccgaattac
    48841 ctgacagcga gcatttactg actctcaatt cgttgcaaca aataagaaat cagacgattc
    48901 tgcttgtgaa aggagaagga ggcaggcaac tgattgaaga atatttaatg ctgaagggag
    48961 cgaaactatg tcttctgtca gtctataaac gagtcatgcc agccatcgac caagaattta
    49021 ttaattctct gtggcgcgat gacctggtgg acattatact gttaacaagt gagcagtcca
    49081 tacataatct ttttaaaatg tttagcatag aggggcaaat gtggttacaa aacaaacctt
    49141 gcctggtcat tagtgaccga cttgcaaagg tagcttcttt atttggaatt aaaaagattc
    49201 ttattagcca tccagaaagg atgataggtg cgttatttga ctataaggat taatccatgg
    49261 ccaatagcaa tgaagaacag aaaaaaacaa ttcaaccgca acaaccatct aaagttgagc
    49321 ccgacatcaa ccaacaaatg aaagcctctt tcttcggtag taaataccta tccttaataa
    49381 tcagcttgac atcgcttttg gcgttccttg ctatcatcgt ctctatttat tccattcaat
    49441 tggagaaaca atttcaaaac catcagcttg ttgaaaacaa aaatttaact gatgaattgg
    49501 aaagaataaa agtagagcaa aatacagtcc aaaagctcct ggataacaat gccaatcatc
    49561 ttcagcaaat tcagagtgat ttaacaagca aaatggatag cttaaataaa gaattacaaa
    49621 cagctatgaa gcaaaaattg tatcaaaata atgattggct tcttttaaag gcacgttatt
    49681 atcttgaatt agcgcaaatc aatgttcatt ggagtgataa ttttaatacc tctgtcgccc
    49741 ttttacagca agctgatgcg ctactgaaag gtatgaatat ccccaaaata tttaccattc
    49801 gccagacaat cgccaaagaa attgcccaat taaagtcaat ttctgttgtt gatatcacag
    49861 ggatattaag tcaattggat gcggcccaag cggctatcaa taatctttct attcaatccg
    49921 tagtagatca acaggaagtg ctaaaccata tcaccaagtc tgaagagtct ggcaaaactg
    49981 gatggcgaaa tcggttgcaa gacagtgtga attttctgga gaaattggtt gttattcgtc
    50041 gccacaatga aaatattcaa ccacttatat cccctctata tgaatctgca ataaaagaga
    50101 atatccgcct taaccttcag gaagcgcagt gggctatttt aaataataac cccgcagtct
    50161 accagtttgc tttaaaccag gccattgcaa atcttaaaag agtatttaat gaatcttccc
    50221 aaaacaccga cgttttgatt aagcaattgt ccactttgca aaatgtaaaa ttaactcagg
    50281 aaaaacctgt cgtaggacaa gccatcccgc taatcaatca aatgattgac aataaagagt
    50341 tgctggtcga tcaagcaaac agcaagaaag gagaaaatta agaatgatac gagttctgtt
    50401 tgcttttatt attttactgc tctctgtgtt ccttggtatt caactcaata aggatccagg
    50461 ttatgtctta atagctatta ataactggac tattgaaact accttatggg tctctgtttt
    50521 tggcttgttt tttctgtttt ttttaatcta tggcctggtt cagttttgca ataaaattac
    50581 aagaatgcca ggcatggtca ataaatggca ctcacgacgc ttggcacaaa aagctcaagc
    50641 cacgactcga aagggactga tagaatatag cgagggctat tggcaaaaag caaaaaatca
    50701 tttaatacaa gctctgccaa acaccgacac tcctttactt aattatttaa cagcagcgag
    50761 agctgctcaa aaaatggggg atagcaagct tcgcgatcat tatcttaggg aagcacagca
    50821 atctatgccc gaagcgaaaa ttgctgttga attaacccaa gcgcaattac aattggccaa
    50881 tcaccaatgg gaacaggcat tggccacatt aaagcatctt caagatttag caccacgcca
    50941 tccttatgtc ttgaaattat taatgaatct ttatgaagaa ataaaagatt ggcagcagtt
    51001 gatcgctctt ttacctgatt taaaaaagaa ccacattatt tcagatcaag cttttgaaca
    51061 attacaaaaa aatacttatt tgcaagcaat gattgatttg gcaaaacaca atcaatcaga
    51121 tggcattacc aaattgtatc agacgctgcc aaaaacactg gttaacgata ctgcaattac
    51181 agcagaatat gcccgctttc tgattaggaa tcaggattac gatcaggcag aatatcattt
    51241 aaagcgatgc cttcgcaaag agttggataa tcggttaatt gagctttata gcctgctccc
    51301 ttgtgaagaa aatcaattgt tatttgctga atcattactc aaaaaaaatc ctcactcagc
    51361 cgcattgtac ctatgtttag ggagaatgtg cctctcgcgg catttatggg gaaaagccaa
    51421 acattatctt gaacagtcta ttgagctaaa ccccacgccc gtagcattta tcgaacttgg
    51481 caaactccat gaaaagctaa atgacccctt atccagtggc tcttgttata aaaaaggtct
    51541 ggagttgata acaaaagatg aattatccta attgattaaa aactgaaaga cacagctcga
    51601 aatgcaaagc aaaaaatgtt tttaataagg gcgtttagat acaattaatg aataaattaa
    51661 accttttttt aaacaaagaa attaggggtc gtaaatccag ccccaattaa atgattatcc
    51721 tgggattatg acatgcgtca ttgcattccg tttctgtttt ttcaacctga atagtgacat
    51781 gctgaatgct gaaatcatgc tttaattttt caaccagctc tctacgcaag tcatcagata
    51841 atgactcctc gggcataaat aaatgaacgg aaagtgcatt ttctttcgta ctgattgccc
    51901 aaatatgtaa atcatgaata gattttacac cagggatagc caagagaaaa tcactgactt
    51961 taatccagga tatatcacgg ggaacaccgt caataattaa tctgaaacta tccgcaaata
    52021 gtgaccaggt gcccttcaaa atcactaatg caattaatag tccgacaacc ggatctatcc
    52081 ataaccaacc cgtcaggtat aatacacccg ctgataaaac aacacctacc gagatcaaag
    52141 catcataaaa taaatgcaaa taagctcctc gaatattaag atcgtcagaa ccccgtaaaa
    52201 acaagagcgc tgtagagaag ttcacgacta taccaatcgc agcgactatc atcacagaga
    52261 cagcttgaat ttcagtcggt gaaaataact tatacattgc atctgtcgct atgatcccgc
    52321 aagtaaatac cagtaacgct ccattggcca atgccgctaa aatagaggtt tttttaaatc
    52381 cataagttgc tttatgggta ggttttctct tcattaatcc ggttgctacc catgctaaaa
    52441 tcagccctaa tacatcacct aaattatgaa aagcatctgc tagcaagctg gtagagttcg
    52501 ctaaataggc aaaaataatt tgcatcacaa caaaaaggcc attcgcagta attgcaatta
    52561 taaaagccct gtcataagtc acttccccat gctcatgatg gtgtgctcca tcatgcgaat
    52621 gcttactcat aagtctcctt cgttcttgct tgcagagtaa taattaagtc caattttaat
    52681 gcgatctctt gtattttgct tgcgccaggc attcgtatct cgtaaagaat aaacacaacc
    52741 acaatactct tgtttgtaaa atgcttctct tttggcaatt tcgtacattc tttcagagcc
    52801 gccattcttt cgccaattat aagtccaata tatcaaatca ggataatgac ttgctgcccg
    52861 cactccgcaa tcattgatct gattcatatc tttccaacgt gaaataccca aagagctact
    52921 gataacagga aagtcatgct cataagcata gagtgctgtt ctttcaaatc gcatatcaaa
    52981 acacatagtg caacgcttgc ctctttctgg ctcccattcc aatcctttgg ctcgagcaaa
    53041 ccagttttct ttatcgtaat cggcatcgat aaaggggata ttatgctttt gggcaaactt
    53101 aatattctct tcttttctta tttcatattc ctggagagga tgaatattgg ggttataaaa
    53161 aaatatagta aagtcaatct cagaaaaaat gagcgcttcc atcacttcac ctgaacaagg
    53221 agcacaacag gaatgaagta ataacttttt agcgccatta ggtaattcta aacgttctct
    53281 atttgtcatt ttttacttcc ggcaaattaa taaaatgttg tcgataataa atcagctcat
    53341 tgattgaatc ttttatatca tccaaagcaa gatgtttcga ttccttaact actccattca
    53401 ttaattctgg acgccagcgc aataccagct ctttcaacga actgacatcc aaattccgat
    53461 agtggaaata agcagccaac tcaggcatgt atttatataa aaaacgtcta tcctggcaga
    53521 tactattgcc acacatgggt gattttccct tatccacata ctgttttaaa aattcaatcg
    53581 ttaattgttc agcttgagat tcactgacat tgctctctaa aactcgcttc accaatcccg
    53641 actgattatg ttgctttgta ttccatgcat ccatactgtc tagaagaatt ttaggctgag
    53701 acaccgctat gacaggtccc tctgcgagaa tgttaagttg tggatccgtt acaatcgtgg
    53761 ccatttctat aattctatct tgttctggct caaggccagt catttccaaa tcaatccaaa
    53821 ttaaattttg attatttttc atttgatttc caagaagtca taattcgctc tacacaagcc
    53881 acacgacttt gatgcatggc ctccttaatc gctttacctt cataaccttg tacgataaaa
    53941 gtttgtggcg tcactttaac acattcagat aatatttcat tccataattg agtttggcga
    54001 tagaccactg ttttgccaca actctcggca tctgcttgac aagcaatcaa tattttatga
    54061 aataattgag gtcgtctaaa ggcatctacc tgctccaaaa gcttgacgat tgtgttagga
    54121 cgcaattcgc atagcctatg aatattcaaa tgagctcgcg ccactgtaac ggccaagtcg
    54181 cgataatcat taggaatgcg caagcgagca cataatgctc gaatcagctt ggtaccctcc
    54241 tcctcatgcc catggtgttt aggccatgcc tgaattggtg tcgaggcttt gcctaaatca
    54301 tgaaccaaag cagcaaatcg tactaatggt tcttcgctaa gctcagatga tgcccgtaat
    54361 gtcattaatg aatgaatgcc cgtatctatt tcttgatggt attgatgtgg attaggcaca
    54421 ccaaataatg agttaatttc tggcaaaatc actcttaatg catcacagga acgtaaagaa
    54481 agaatgaatt gttcaggatt tttttcttca agactttttt gccattcctg ccaaacacgc
    54541 tcggggatca aatgagctaa ttcaccttgt ttaaccatgg aatacattaa taaacgagtc
    54601 tcattggcta ttctaaatcc aagatgatga aaccgactgg caaaacgggc aacacgtaaa
    54661 acccgaacag gatcttctac aaaagcggag gacacatgac gtaataattt ctcttcgaga
    54721 tctcgctgtc cctgatatgg atcaattaaa tttccctgtt catccatagc catggcatta
    54781 atcgttaaat ctcgtcgtgc caaatcctct tccaacgtca ctgattcact aaaatcacaa
    54841 atgaatccat aatatcctgg agctgattta cgctctgttc ttgctaatgc atattcctct
    54901 ttcgtttcag gatgcaaaaa aacggggaaa tcccgcccaa cttgcctata ttttcttttt
    54961 aataattctt ccggcgttgc tccgacgact acccaatcct gttcctggac aggaattcct
    55021 aataatcgat cacgaactgc accgcctacc aagtagactt tcattaaata tgatttacct
    55081 tcatactgta ttattaatcg catcaattat agtatagatt gacactatga gtaaaagacg
    55141 aatcaataag cagcaatctg cccgtatagc taaaatccag aaaaactacc atgaatacat
    55201 gggaaataac tccgataacc tggctgatgg tttagtcatt actcgattta gcaggcatgc
    55261 agaaattgaa gacaatcagg ggaaacgaat tctttgctct atccgaccta atcttgacac
    55321 actggtggct ggtgatagag taatctggca gatagaaggt gagaaacaag gggtagttgt
    55381 gagcatctat cccaggggaa gcttactggc aaggcccagt cagaaggggt taaagagacc
    55441 cgttgcggca aatatcactc aactggttgt agtgattgct ccaaaaccag agattagttg
    55501 gccattactt gacagctatt tgattatggc agagatactt caagtacacg tggtgatcgt
    55561 tctcaataaa attgatcttc cctgtcaaac acttcagcag cgactcatga tggattacca
    55621 attgctgaac tatcccgtca tcatggcaag taaccaaacc ccagacacaa tagtaccatt
    55681 aaaacaagca ttaaataatc aaatcagtgt ttttgttggc caatcggggg taggcaaatc
    55741 atcattgatt tcaagtttat tgccacatga ggaaaatatt gcgatcgata aaatatccat
    55801 ggtctcagag ttaggcaaac atactacaag aaactctcgc tattatcatc tacctagtgg
    55861 tggtgccttg atagactcgc caggcgttcg ggaattcagc ttgtgggata ttgattgctc
    55921 tatgattgct caaggatata aagaattcaa accttatttg tcccaatgta aattccgcaa
    55981 ctgcacacat attaatacgc cccaatgcgc gatcattgat gcgctaaata agggaaagat
    56041 ttcaacccaa cgatatgaaa attttacaaa attatgtgcc caatttaata gtttaaaaga
    56101 gtaaacaaaa agctcttccg aaaatagata atcagttatc aacgtaacgc agcacttgtt
    56161 gttaggtctt cagccgaaag caccccgttt tgcaatccac gctggtattc taattgatag
    56221 tcaacagcag ttgttaataa ttgattaagc aagccattcc tgctaacccc tgtaaaatca
    56281 aatgaggtag caccagcctc aatttccttt ttgatccgcg cagcagcaat catattattt
    56341 tttgtagtct tacgattaaa aaataatggt ttaagatccc accaggttgc tccttcttgt
    56401 cttgtaacaa tatatttatc caatgcctcg ccaagtgctt ctgcccatgt ttggcctcta
    56461 tatagttggg tcatgaaata ttgctcaggt gtatattgat atctattata ttggggtgtt
    56521 tgtagcagat tgttatatgt tacagtttgt cctgcctcaa gattgttaac cgtcaataca
    56581 tctttatctg tatcataact aagtgatacc gactttgccc ccactggtag cataacggtt
    56641 ttaaaaacaa tatttctctc ttgtaatctt tgaaattcgc gataatcaac catacttcgc
    56701 gggtgaagga taaaggttat atcctttaca tctttaagtt cactacctga taatttcaaa
    56761 ggcgcactac ccatgtaatc accaaagata cggtttggat tcaaatgata aaaatatcga
    56821 gaaccatcaa tttgagtgat taaagcgaca acacattgat aatattcata atgcccatat
    56881 aactttgctg actccatctt cattttatta ttagtactta ctgtttcata agattgatta
    56941 tttgtgcctg gagcaatatt ggggagcaaa tgcgaacttg aaaagaaagt agataaaaat
    57001 tggtcttgca ttaatttttg atataattga ggaaagcgat attggcatga aatcaatcga
    57061 tcattattga tggttaatat agtatctgtt aattgctctt tttcctcctg agtgtattta
    57121 tcagtcattt taacatacat caaagaagca acgtattcat caatatcgcc tatcatttct
    57181 aatgatatca atccctcgac aaacctggga tcataaccat ttaaaaattc aattttttgt
    57241 acctgactta aaagttttgt tctatcaagt gccgcgtttc ttaaagcaag ttctattaga
    57301 tttgacatat tataatttca aaagcataaa taagacaaat tgtttaatta tgattcaatt
    57361 cgcgcactgg agcaagcttt gctcatctag gccaagacaa tcgatccata tcaatgcgat
    57421 gagttcaaaa tgcacaataa tgaattagga taattccagt taattaagtc aggtcggagc
    57481 gcctatataa tcgataactc gggctgattg ttgtgcctct tctatttccg caacagtcaa
    57541 aatagggcgg cttatatttc gcaggaaaat gagcatattt tccaattgct cagggttaca
    57601 acgctcttct aacgaatgaa gcatttcttt aaaggcttcc aaaatagcac tcacttgctt
    57661 tacatctgtt ttattaatta acaatttctt actatctatg cattggtaag tgccaaaaaa
    57721 attaggggaa ctgtctaact gatgcatact aatttgacat agtcggtttg tcacataatg
    57781 aatgcagttc gttaaaaatt tacttttagc ctctacagga tcaaacaatg acaaagttaa
    57841 aattaatttt cgtctctgtt gttcatctaa actcttcaag aatctggaaa ataaaatatt
    57901 gactctcagt tgaatttgaa actcattatt attttgagca taagtatgta ttaattcatc
    57961 caaaaaatta acaatttttt cgcccaatga tttattaatc aatctaaaat gtactaaaac
    58021 atgaaataat aattccgggt caaaccaata aacatccatt ttagataaat cacccgcctc
    58081 taccagctga taccaatcca gcgttgattg atagtgtgtc agccatttac aaatgtgttt
    58141 atttttttgg caaaggataa tgtgctcatc cattgtcttt ttatagactg caattaaagc
    58201 gtctaactta ttcgtcatta tgaaaggagc aaactgatta tagatctctt gtccttctga
    58261 aaagattaca tttttgatat cccaaaaact gattgtttta cctgaaaaag gaaaaacttc
    58321 gaatggggta acaaataatg acactaaaaa agttttaata cgatacaata aattgtctgt
    58381 cccagtttct actctcttct ctaagtgacc ttccgagtgg aattttggtt ccaattctgc
    58441 ataaaaagat aataaccctt tatttgatgc ctttaatatg ggattaaatt gatacagcca
    58501 actcattata gcttttaact gttcatccac atcataagat tgcgcca
//
LOCUS       DACVWI010000002        49769 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.002, whole genome shotgun sequence.
ACCESSION   DACVWI010000002 DACVWI010000000
VERSION     DACVWI010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 49769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49769
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.002"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1090)
                     /locus_tag="JBH85_00305"
     CDS             complement(<1..1090)
                     /locus_tag="JBH85_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944632.1"
                     /translation="MALNARVLFWLFHTIDPKCYSIHLQRNIMKTMKQMIRLTMLLLM
                     LSFNLWAINSSSPWYTEEKGKGLVINVELYLSSTCPHCHKADEFFKEIEKHYTWLHVE
                     RYIIDKDKKALKRFGDLLTELNRYDFAVPSIFFCNSRWVGFATAQTTGKDLLNGIEYC
                     KEEIVKNGRLTPATESVLNRWGNANLFDSNITGSPSTNTFIFVVALIDAISPCALFTI
                     AAFLGVLFMIEKRKLQFISGSVFILTVAGVHYFQQVYPTLFFESLSWFRIPAALVGLF
                     AFYFAGQYYKKHSIQPLFIVLAFLLALTVPMFQQTCLMNWSYVFEQWLHNQNVSGVQM
                     GLYQFAYQLIYIFPLIILMFLYWILMKIH"
     gene            complement(1122..1556)
                     /locus_tag="JBH85_00310"
     CDS             complement(1122..1556)
                     /locus_tag="JBH85_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HAU0944633.1"
                     /translation="MAHLIHSVLPVPPRKIAYIHPDDSVKECIKQMVEKDIGALVVFD
                     NDAHLIGIVSERDILRCYFHKNLSLETAKVSDVVYNNVTILSPHDSVEKAMQVITETK
                     RRHVLIQEEGELLAILSIGDLLYHVLEDKLRVIEHLENYIHS"
     gene            complement(1862..2311)
                     /locus_tag="JBH85_00315"
     CDS             complement(1862..2311)
                     /locus_tag="JBH85_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HAU0944634.1"
                     /translation="MKKLIVASLSLTFMLGGCASMNKEGVGTITGGVVGGLLGSQFGG
                     GSGKVAAAGAGALLGAYLGGQIGKTMDKVDRLEMQRALETAPTGKAVAWSNPDTGYRY
                     TVQPTRTYYNAQQPCREYITKAMIGGKTQQIYGKACRQADGSWRVVN"
     gene            complement(2384..3457)
                     /gene="alr"
                     /locus_tag="JBH85_00320"
     CDS             complement(2384..3457)
                     /gene="alr"
                     /locus_tag="JBH85_00320"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HAU0944635.1"
                     /translation="MSRPTRLVIEPSALLHNLSQIKHLAPGKKVIAMVKANAYGCGVR
                     EVAPVLDGRIEAFGVACLEEALAIRALGVETPCILFQGVFSSDELSVAVENDFACILH
                     HAQQLEWLIKTPLPYPIKIWVKVNTGMHRLGFKIHELQKVMGALQTCTWVDKNIGLMT
                     HLACADEPHRPENQQQISLFQEISIPGFRQRSIANSAAIISFPDSHADVVRPGIMLYG
                     VSPFANQNARDLSLIPVMRFMSAISAIHDNPSFAQVGYGGTWKSDKPSRIGIVAAGYG
                     DGYPRHISEKTPVWVRGREVSIVGRVSMDMLTIDLTEHPDVEIGDEVELWGTHVLVER
                     IAKSAGTVGYELLCQISERVRYK"
     gene            complement(3459..4841)
                     /gene="dnaB"
                     /locus_tag="JBH85_00325"
     CDS             complement(3459..4841)
                     /gene="dnaB"
                     /locus_tag="JBH85_00325"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HAU0944636.1"
                     /translation="MLDLQISKKTVDPLKRPPHSVEAEQSIIGGLMLDNQVWDKVSNK
                     LCETDFYRTEHRILFRAISALAKKDQPFDVVTLLDALKTRNELDDAGGEAYLFELANN
                     TPSVANVTAYADIVREKSVQRQLIAVATEIADSAYNPAGREVPELLDMAETKVFAIGE
                     QTASDGGPENIKSILVRAVEKIDALYHNGDAITGLATGLSDLDEMTSGLQPSDLIIVA
                     GRPSMGKTTLVMNMAEHAAIKAGKPVLVFSMEMPADSLAMRMMSSLGRIDQHRIRTGK
                     LDDNDWPRVTSAVHMLSEAPLFIDDTPALSPGEMRARARRLAKEHGSLGLIVVDYLQL
                     MKVPGFNADNRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRE
                     SGAIEQDADLICFIYRDEVYNEDSPDKGTAEIIVAKQRNGPIGKVRVAFLGKYTRFED
                     LAFNGYQGVE"
     gene            complement(5026..5460)
                     /locus_tag="JBH85_00330"
     CDS             complement(5026..5460)
                     /locus_tag="JBH85_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HAU0944637.1"
                     /translation="MKLWKVLCSFVIAVCYLPLAFAASQSPAGTWTTIDDKTGAKRAV
                     VNLKVSNGTLSGTIVKVYPQPGDTGICSKCPGAFKDKKIQGLTFVWGLKDEGNGVWSG
                     GSILDPKTGKIYKAKMTLQGNKLYVRGYFGVSALGRTQTWIR"
     gene            complement(5720..8986)
                     /locus_tag="JBH85_00335"
     CDS             complement(5720..8986)
                     /locus_tag="JBH85_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HAU0944638.1"
                     /translation="MLNEAISKMPEAFEAKILLRGEEYFQKGQVLNIRLSDGLLKGRV
                     KGSASQIYDIHMDLKSWPAKPSRCSCAYQYNCKHAAACLFALRDREKINLQSLPSNKL
                     DRKLDVWLKNLRAQEASEIKREEATHHLIYLIDLKLRGYEHKVSIKLALAKLLKRGGY
                     GKKIIFNTLANSKKQHFMGDDNDIVAQLLFKCNVSGWFDNLLIRNTELLDKIIATGRA
                     FFIENEDIPIKKGETLTGECQWILSWNGNQILKLRHDNQNIEPLLLDESWYFDIKNAV
                     IGHLNSPYPIKQLRHLLEAPPIPLDQAELLAKKMSKNCPEFPMPNVFNQKETKQLKPI
                     PVLILDAVTEQEEHRWIDDGEENNSLYIAKIFFDYEGLLVPFAEECEKVVSLKGDVLV
                     EYQRDQEFEDLKIQELRNSIDLRPFHQWEKYHWNLPDHSFFILKDVQIVSDLESLYQQ
                     SLPYLKDHGWRIEFASPFYQEIVSADEVEWYSDIQESTTDFFSYQLGILVEGKPVSIV
                     PLVADLIQRYKGNDLDNLPDEQLVKLPLLDGRLLQLPMGRIKPLVRLLLQFGLRQIDQ
                     NQQLQINKYQLVLMQEVELAIAATKSRWQGAESLREELRKLVRLNDLPEIKVPSGLQA
                     HLRDYQHYGLNWLQFLRVSRFNGVLADDMGLGKTVQTLAHLQYEKEQSRLHKASLIIA
                     PTSLVGNWFAEAKRFTPEIKVLIYHGSDRHQDNFDDYDLIISTYGLIHRDKEKFVGYP
                     FYYLILDEAQFIKNARTKTTQIIQQLKASHRLCLTGTPLENHLGELWSLFHFLMPGLL
                     GDAKQFRLWFRTPIEKYADMGRRDLLAKRVQPFLLRRTKNQVANELPPKTEITRTIEL
                     VGAQRDLYEAIRMSMEKKVRDAIARQGLGKSHILLLDALLKLRQVCCDPRLLSMSEAE
                     IAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLIARQYDYLKLTGQTQ
                     NRQALVEQFQQGDTPIFLISLKAGGTGLNLTRADTVIHYDPWWNPSVEDQATDRTHRI
                     GQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILSTDASRSMVLSEEDLNQFFMPL
                     "
     gene            9270..10880
                     /locus_tag="JBH85_00340"
     CDS             9270..10880
                     /locus_tag="JBH85_00340"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HAU0944639.1"
                     /translation="MNAPLTVLMAQINPTVGAIDANTNKILDVIKNHQASHDVIIFPE
                     LTLSGYPAEDLLFRKEYHDKILINLHDIQDTTKDCYVIVGHPMMHIGDCYNGFSIFYQ
                     GEKIREYHKQKLPNYGVFDEARYFTPGKKDPCVLSIKNHKLGFCVCEDLWQKGPVDDL
                     LDSGISILISLNASPFDYRKYQLREELLRSYAKQGVSIIYVNQIGGQDDLLFDGQSLA
                     MDNQGIIRALAPAFEESLCTVNIDGNKIDGSITPYLDKEALIYKALVCGTRDYVRKNN
                     FPGVLLGLSGGIDSALTLAIAVDALGAEQVHAVLMPSRYTASISNEDALEQLSNLKVA
                     HSIIPIEPMFQSMIESLHPVFKDLPPDTTEENIQARIRGMLLMALSNKTGKMVLTTSN
                     KSETAVGYATLYGDMAGGFAVLKDVLKTQVYELVRYRNKISLVIPERVITRPPSAELK
                     PNQTDQDSLPEYGELDAIIMAYMEQNLSPSEIIAKGFKPQVVNKIIQLIKRNEYKRRQ
                     AAPGIKISNLAFGKDWRYPITNGFNQCI"
     gene            complement(10932..12380)
                     /gene="ravH"
                     /locus_tag="JBH85_00345"
     CDS             complement(10932..12380)
                     /gene="ravH"
                     /locus_tag="JBH85_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavH"
                     /protein_id="HAU0944640.1"
                     /translation="MDKEQGAYMPPKDGKELLDIIDNLNEFAEKLLSRIADESDEGCK
                     QLVHVLESARARYNKPIESWLKGWFYQFTRKRGQEIDMAIKGMEAFPDAYTRLQEFKL
                     LVGKGEWEHGSFNYYLFDELIKSVPGYKPLESELVHPIILKLRQKINKRIDEFMSQYL
                     ATQKLIEARKQELLQTHQSAQKFIDNVSITNDLEAAKKSAKENKGVIQFCLIFESDIW
                     KLSWVAATGKVYALEPGEELIQILIDGKIQDIVKDIDNLSALHLKQLKQECVKAREML
                     LGRVQLLINPKDPRTQAELTNDVLKENGTSATFVLRGKPNEYSLWWINTLGFAHEISL
                     ESYASMKTWLNDQSHPLKEEHIPQLKTYLLNVNTVKSIDVKEDMKEFKAQLQECLAAG
                     PKSKTPPASGATKTTNAKKLDLRLFGDVERCLRSQLSERQEEKAAIQEPGKINLNKYE
                     NIATLFGNRAKNMEQHEGQQSKPNDSLSIRSI"
     gene            12546..13184
                     /locus_tag="JBH85_00350"
     CDS             12546..13184
                     /locus_tag="JBH85_00350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HAU0944641.1"
                     /translation="MRITLLTTAILATGVASAAVPVDGWYASAFGGYTYIPPNIYNFA
                     YGVFRDEVGYNNGYNAGGRVGYQSNPIRYEVEYTYLRGEARKFNLNFITQLGVTGFTS
                     ANTIMANIYYDCPDMLPAIAPFIGLGIGYASLRTELDSIGPFRPSYFTTSDSAFAYQG
                     TVGITYNFSENYAANLAYRYIATDNSSNFGKTYQAHLASVGAIYRFDQGNYK"
     gene            13194..13931
                     /locus_tag="JBH85_00355"
     CDS             13194..13931
                     /locus_tag="JBH85_00355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HAU0944642.1"
                     /translation="MKKLIQLSVLSGLLLSGSTFAFNQPQGFYVGILGEISHGPSGED
                     LIFTEPNRTITANVEYSPVSGGGGAVLGYKISHYRIEGEVLYNRISTGPFTISSCTLQ
                     SPNVLTPTGVCPSAFEVNRLGYDGSSAALYGLLNLYYDFFSSVNESTYVPYIGIGAGQ
                     VRIQNRNNFVKTTPVNLPASAGFSTTMVSGAGQGIVGVGYLMDDFAWLAMDFRFLTTS
                     SLSDFNNSRYTLSTFNVGVNFTFDKST"
     gene            complement(13923..14975)
                     /locus_tag="JBH85_00360"
     CDS             complement(13923..14975)
                     /locus_tag="JBH85_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAU0944643.1"
                     /translation="MNENHKELISIGLTVSIVIFSLYIVHKFIPSMIWAAIIVIATYP
                     LYTRWRKLFGNKHNTSAFLFTTLMGLLFLIPLSWLIGILIKESQLFINFLQHINKEGG
                     AAPEFFKNIPLVGDDLIQYWDVNIGKPGSIKEFLSNLHVTLTPTSYYIKQIGVNLAHR
                     SFQVGFTLLTLFFFYRDGDKLLLQIQHIGEYCLGDRWFRYSDRLPSALRGTVNGTIVV
                     GIGVGILMGICYALVGFPAPTLTGFITALAAMIPFVVPIVFIIVALILLSVGSLIGGI
                     IVLVWGTLVMFVADHFVKPVLIGGAIQLPFLAVLFGILGGVETLGLLGLFLGPMVMVL
                     FVTLWQEPQGHKKSSG"
     gene            complement(14975..15457)
                     /locus_tag="JBH85_00365"
     CDS             complement(14975..15457)
                     /locus_tag="JBH85_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HAU0944644.1"
                     /translation="MNQVNLANRVWQDPVYFIAFGFGSGLMSIAPGTWGTLAAIPLYL
                     LMINAHWSIYLLWTALAFALGVWVSDRVTEDLGVHDYKGIVWDEVVGYLLTMFLAPKG
                     ISWMLIGFILFRIFDIWKPQPIRMIDQRVHGGLGIMLDDVLAAVPAWCIMQILVWSFA
                     "
     gene            complement(15547..16524)
                     /gene="thiL"
                     /locus_tag="JBH85_00370"
     CDS             complement(15547..16524)
                     /gene="thiL"
                     /locus_tag="JBH85_00370"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HAU0944645.1"
                     /translation="MLKSVLIMNEFTLIDHYFKSIPCKRNDVLFGIGDDAACLQVPDG
                     MHLLVSTDTLVSGIHFLPQWDPYDIACKAVMVNISDMAAMGSQPCWVTLALTLPELNQ
                     SWLDSFARGIKDSLGLYNVDLIGGDTTKGPLSITLTIMGLTPQGQAIRRCGAQAGDAI
                     IVSGELGAAGLAVKLLDGHKKVNAKDKIELMNKLLHPKPRVDLCHLLRKYATSAIDIS
                     DGLGADLNHICVASGVGANLFEEAIPRHPLLNQYCPEQALDLALSGGDDYELCFTVST
                     QQLDSFNRDLQKENLICFPIGVIEEKPGLRIQSADSPSKELQPRGYSHF"
     gene            complement(16496..16924)
                     /gene="nusB"
                     /locus_tag="JBH85_00375"
     CDS             complement(16496..16924)
                     /gene="nusB"
                     /locus_tag="JBH85_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008292672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HAU0944646.1"
                     /translation="MRGKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGE
                     YFCRLLYGIPTHVEALEASLLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVIL
                     DESVSLTKEFGSQEGYRYVNGVLNNLAKQVRSVEVSLDNE"
     gene            complement(16997..17464)
                     /gene="nrdR"
                     /locus_tag="JBH85_00380"
     CDS             complement(16997..17464)
                     /gene="nrdR"
                     /locus_tag="JBH85_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HAU0944647.1"
                     /translation="MYCPFCHAEETKVVDSRLVADGAQVRRRRECLECHERFTTFETA
                     ELIMPLIIKRDGRREPFHIDNLRSGMLRALEKRPVSVDDLEKAIISITEEIRRRGERE
                     IDSQVVGELVMKELFRLDHVAYVRFASVYKRFKDVSDFRQTIDQMKNEDKEKS"
     gene            complement(17467..18720)
                     /locus_tag="JBH85_00385"
     CDS             complement(17467..18720)
                     /locus_tag="JBH85_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HAU0944648.1"
                     /translation="MFDESYTIKNFDDVLFKAISDEKRRQEEHIELIASENYVSPRVL
                     EAQGSVLTNKYAEGYPGKRYYGGCEFVDVAEELAISRAKLLFGAHYVNVQPHSGSQAN
                     AAVMMALLSPGDTFMGMALPHGGHLTHGSKVNFSGKLYHSVEYGVDSNTGLIDYDALE
                     KLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPV
                     PYADVVTTTTHKTLRGPRGGLILCKENEEIEKKLNSSVFPGMQGGPLMHVIAAKAVAF
                     AEALLPEFKTYQQQVLANARTMCSVLQSRGYDIVSGGTDNHLLLVDLINKGITGKEAD
                     AALGRANITVNKNSVPNDPRSPFVTSGLRLGTPAATTRGFKEREITLLSNWVADVLDN
                     VHDETNISRVKTQVLLLCREFPVYA"
     gene            complement(18748..19059)
                     /locus_tag="JBH85_00390"
     CDS             complement(18748..19059)
                     /locus_tag="JBH85_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HAU0944649.1"
                     /translation="MRDSLKMLLVGSISMIIIACAASPLSESTGEYLDSSTTTAKVKA
                     SLVDQLGTTGFAVKVKTYKDQVQLSGFVDSQKIKQRAGIIAAGVDGVKSVRNDLIIKT
                     R"
     gene            complement(19184..19621)
                     /locus_tag="JBH85_00395"
     CDS             complement(19184..19621)
                     /locus_tag="JBH85_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944650.1"
                     /translation="MKYLIPCVVLFPLLSSCTVIQEDFYQPEYLGPAPRVEVTPSYPQ
                     GHYHRHYNQRYHSNNRYYSAPRGQVHYEHAKTQGHAAVVTPPPSQARVEVQKNVHGHN
                     ANNGQVHGHAHDNGNVHSHPDSSNVHGHDTSNPEEQKKIHGHS"
     gene            complement(19687..20091)
                     /locus_tag="JBH85_00400"
     CDS             complement(19687..20091)
                     /locus_tag="JBH85_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944651.1"
                     /translation="MKLKSLLFVVCFSLFSNVFAANLHLHPKADNADKKSIQKSVTYP
                     GYCQIEIINQSFTDVRVFGTFDDGTTIDFNIYRYESPHYISLFYNFYCHSGMYITITS
                     PYYTIYSGWTNVNSTIRVVPYLKEAKAELSTR"
     gene            20332..21594
                     /locus_tag="JBH85_00405"
     CDS             20332..21594
                     /locus_tag="JBH85_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0944652.1"
                     /translation="MNKRLTIMGIILLVVFGGIIAFNLIKAYMIKQFFASYAPPAVTV
                     SSAVAQAVDWKPTIDAVGNFVAINGVDVNSEASGNVVQIHFESGQYVEKDEPLITIDD
                     SIDQALLKFNQSELTLKELSYKRQTDLFKRGATPSSSVDEAKANLQQAQAKVEQIQAQ
                     IKQKHIGAPFSGRLGIRQVNLGQYVTPGQTSIVSLQSLDPLYLEFYLPEQYYKRIHLN
                     QPVTFRVEEFPNILFEGVIHAVNSKVDLTTHNVQVQALLPNCPADAIQDPTKSPLIKV
                     RKQVRGDKLIVSCSTELNKQNKIRNFVFIPGMFASIEVDQPAEPDTIIVPSTAISYSL
                     YGNAVYIIEKSKEGKKNKDGTDQLVVNRVFVTTGEQQGNYTVIKKGIKVGQLVVSTGD
                     LKLQNGTPVVINNSVKLDTDSDPNQLGQ"
     gene            21711..24758
                     /locus_tag="JBH85_00410"
     CDS             21711..24758
                     /locus_tag="JBH85_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HAU0944653.1"
                     /translation="MKFTDLFIKRPVLSIVVSMLIFLFGINSIYKMQIRQYPKMENTV
                     ITIMTGYPGADAELIAGFITTPLESAVASAEGIDYMTSSSQQGLSTITLNIKLNFDPQ
                     IAFTDVMSKVQQTLNQLPKESQQPVILKKSDSSTALMYISLDSKDMTPQQITDYATRV
                     VQPQLQTVDGVAKADILGGQTYSMRIFMDPIKMAALNVTPADVSSVLASNNFLTAAGS
                     TKSEYVAINVTAKTDLNNVGEFERLIVKSDKGSIIRLRDIAKVELGSQNYDSSVTFNS
                     KKAVFISITPTPTANPLTVINDARKLFPSIVREFPPSLTGTIVYDATAFIRASIHEVM
                     ETIIEAAVIVIIVIFLFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAFV
                     LAIGLVVDDAIVVVENVHRHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGF
                     MSGLTGALFKEFAFTLASAVIISGVIALTLSPMMCSKILSEEATSGKFAIFLDEFFNK
                     LKRVYQNALHSILDTREIMLLLAGVVILMLPYLYSNTAAETAPDEDQGFFFVLATAPQ
                     YATLNYIEAFTKPFDAIYKSFPETENYFTVNTSQPISGMVLKPWDQRKKSQFALKQPL
                     QNKLSKIAGLNALAIVPPPLPGGGGGPAVQFVVKTTNDFQSLMDVSNQLTEKARNSGL
                     FIYIDNSLKFNQPQVEFSINRAKASEMGLDMRALGSTLTSALSNNYINYFNLEGRSYQ
                     VIPQLARKFRLTIEQIGQIYVKTLNGTMVPLSTVITPTEKTQPNAATHFQQLNSATIQ
                     AVMMPGKTLGQGLEFLQKAAQEVLPKGFTYDYGGQSRQFMQEGSALIFAFLFAIIVIF
                     LVLAAQYESFRDPLIVLISVPMSICGALIPLNLGAATINIYTQVGLITLIGLISKHGI
                     LIVDFANHLQREKNLDKRAAVEEAAGIRLRPILMTTAAMVFGVIPLLIASGAGAASRF
                     DIGLVISTGLLIGTCFTLFVVPTLYTYLAEDHRHKPNEPAEIQ"
     gene            25014..27779
                     /locus_tag="JBH85_00415"
     CDS             25014..27779
                     /locus_tag="JBH85_00415"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HAU0944654.1"
                     /translation="MDKTYSPEAIEKALYKKWESHHYFQPRGEGKRFCIMLPPPNVTG
                     SLHMGHGFQHTIMDALTRYHRMLGDKTLWQPGTDHAGISTQLVVERQLEAQGISRKDL
                     TREQFLDKVWQWKEESGNTITQQMRRLGASVDWSRERFTMDEGLSAAVQKVFVQLYEE
                     GLIYRGTRLVNWDPKLGTAVSDLEVLSEEEDGFLWHIRYPVVDSEEFLIVATTRPETL
                     LGDCAVAVHPDDSRFRHLIGKQVHLPLCDRTIPVIADDYVDKEFGSGCVKITPAHDFN
                     DHEVGKRHQLPQINILTKKGTINKNAPLKYQGMDRFVAREQIIKDLEQEGLLAKTEPH
                     KLKVPRGEKSNVIIEPLLTDQWYVKTKPLAEPAIAAVKKGDIRFIPETWDKTYFQWMD
                     NIEDWCISRQLWWGHRIPAWYDNHGNIYVGYSENDVRFKHKIDQSTPLKQDEDVLDTW
                     FSSALWPFSTLGWPERTPELEQFYPTSVLVTGFDIIFFWVARMIMMGLKFTGKIPFKE
                     VFITGLIRDSEGHKMSKSKGNVLDPLDIVDGIDLDSLIAKRTSNLMLNSVRDRITKAT
                     RKEFPEGISAYGTDALRFTYCSLASTGRNVRFDLGRVEGYRNFCNKLWNAARYVLLNT
                     DEEQIDFGDGAFQYSPADQWILSRLQNTVSKVHHYFETYRFDLLANTLYEFVWHEYCD
                     WYLELSKPILQDEQALSAMKRGTRRTLIHVLDQILKLLHPLMPFITEEIWQKTTKFTS
                     ENGISIMLSTYPKVNEEFINPAIEEELDWLKSAIQSLRTIRSEMSISPAKLIPLYIRN
                     ITPELKERIAKYEKILKTLSKIDKINYLAPDEKVPVSATAVLGEIELLIPMADLIDKE
                     AELSRLNKELAKLNKDIELAQGKLNNPKFTDKAPEEIIAKEKDKLAQAQLAKDKLLQH
                     KNRIESL"
     gene            27901..29148
                     /locus_tag="JBH85_00420"
     CDS             27901..29148
                     /locus_tag="JBH85_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HAU0944655.1"
                     /translation="MVTQFNTLKSYIFPIILLLSILLGGLTGYVFNQNVAWLKPFGDI
                     FLNLIFTTIVPLIFFSVSSAIARTGSIGKLGKIFYSMTVIFLFTGIVAAVYALFVVLL
                     FPPAQNMPVLLESSKQLSPTNLPDRLIEIFTVPEFSKLFSHEHILALVLFSILVGLAV
                     AHSKDKGTIFNSFLKAGEDVFMSVFRLIMYYAPIGFFAYFAVIVSEIGPKLMENYLRI
                     AILYYTASVFYFFFALTAYAYLAGKSQGVRLFWGNIFLPAATSIATCSSAASIPANLM
                     ATKSMRIPAEIYETSIPLGSIIHKDGSVMGGVFKIAFLFGIFHLPFTSLPVLMMALGV
                     SLLVGTVMGAIPSGGMLGELLILSVYGFPPSVLIAVAAISIIIDPIATMVNVTSNSVC
                     SMMIARLVEGKNWFLRSSDENNL"
     gene            29237..29698
                     /locus_tag="JBH85_00425"
     CDS             29237..29698
                     /locus_tag="JBH85_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944656.1"
                     /translation="MKKILYVIPGILLITNSFALDIPGNITNSNKDLLPSPFPVYVIE
                     GSAVVNHPYPGAKKVLLPTDNGYVDYPGCYIACYSHNTGVYAISPTISVMGQIRVKGQ
                     YDARICQPDGYKNQDISAAYQFKQLCAEKIPACQNNSCWAGGDTGGWFGIQ"
     gene            complement(29799..30812)
                     /locus_tag="JBH85_00430"
     CDS             complement(29799..30812)
                     /locus_tag="JBH85_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0716 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944657.1"
                     /translation="MFDDTNMSKNESGTAKPIIKSTLMFFNSKLTDLNDKRLQLNRGK
                     GLAKYLAKSQKNTRDLAPLDAALGVMSFSLYMLRFSANVGLLAHLILVESQEKTNHKI
                     RRDIYYSLLNDSLWCVVNLTQFFWLSYRNSISAGLQGMQLETLAQLIDILVMIIRYQQ
                     DKKEYDLKYNQAMGMERSRLAIEWQNKELNGLRSLLTSLSVVIAFGLFSFSGVAVPLS
                     PVISSIILISSLLRVLIDIEKDRQLIHQLKLNETSREQIKNEQLAMTNARMKDLNKII
                     LNSVFLPIGFFLLITTPIPLTIIACVSMLLVHWLITNLINMRYSPNISVSPTIQTAEL
                     SLC"
     gene            30943..31614
                     /locus_tag="JBH85_00435"
     CDS             30943..31614
                     /locus_tag="JBH85_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0944658.1"
                     /translation="MRLLIVEDHKRTADFICKGFNEYQFQADAVYDGAEAIYRISEIN
                     YDAVVLDVMLPIMDGWAVLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKP
                     FSFNELLARVKSLLRRKPKESPILLKINDLTLNLQKHTAIRGDKKLPLTAKEFMLLTF
                     MLKRSGEVLSRTVIAEQVWDINFDTNTNIIDVAIKRLREKVDNDHPTKLIHTVRGVGY
                     VLEIR"
     gene            31595..32692
                     /locus_tag="JBH85_00440"
     CDS             31595..32692
                     /locus_tag="JBH85_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HAU0944659.1"
                     /translation="MYWRFANSMSITNRLLLIFIGSTVLILSIITGLIYPPMKELLHH
                     SHLNNEHYNYLLTRICIKNFFVGLWFSTLIIILASYLLAKKSMRPIKIFTKELASINA
                     SSLEKRLPYTGNPKELEELALTCNDMLFRIESAFSHIKQFSASIAHELRNPIHYLRTA
                     TEITLTKPQTIETYQHVLQTHLEEYQSLTQLIDNLLFLTRCEHGQLQLNVRTLSANHL
                     ISSIIEYYYSIAQEKGIEIQMFGEAQIEVDEHLFKRVISNLIDNSLTYTNKDGRILII
                     IEKRTDNSIQIRIKDNGIGISKEHLPLLYHGFYRVDYSTNKENAGLGLGLAIAKSIME
                     HHKGQLAIDSKMGLGTTVILTLPGKSFLKIE"
     gene            complement(32834..34834)
                     /locus_tag="JBH85_00445"
     CDS             complement(32834..34834)
                     /locus_tag="JBH85_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HAU0944660.1"
                     /translation="MSDTPFIAANKKVAELTFRVIILAIILTVLLAMSNAYLALKLGI
                     LTSASIPAAIISMGILRFFKNSTILENNAVQTAASAGEAVAGGIVYTIPALIIIGFWN
                     HFDYVTNFFIAVCGGILGVLFSIPLRRILVNDQTLKFPEGRAIAEVLKSSADKVGIKD
                     IFLGGLVGGLLELLQIGFKVIASSWNYWFVVKRSLFGLGAGFSATMIGAGYLVGHDMA
                     ISIFLGAVISWLIALPIASQFYPDFLNQYPAEQAATLLWNSEMRYLGIGAMLFAGIWT
                     FIKLAKPLTRSVKTSFRTYISKSKFREQYPRTEKDIPMPFILMGIGLMAGILFLFFQI
                     IFPLGQVGLDNDFSPTIVFIGVIYVLVVGFLFSVITAYFSGMVGVTASPGSSVVISGM
                     LFAAWLLVSAINHLLPLPLTSHQIQAAEAITIIIGAVVTGIAAIANDNTQDLKVGQLV
                     GATPWKQEVMLLLGVVISALVIPPVMQILFNVYGIAGVMPHAGMDVTQSLPAPTAALM
                     AAITEAVFRNSLPWNMMLAGSCIILLAIFLNRILNIKRFLNLSILGIAIGMYLPLSSS
                     VPLFIGGMIALFVQNRLGRLKVNPEESTNRKQKGTLIACGLVAGSAIMDVLLAIPFSI
                     FHSPDALQLVGSSWKQYGVYLGVFSTLLLAWWISHRVCRSKI"
     gene            complement(34834..35529)
                     /locus_tag="JBH85_00450"
     CDS             complement(34834..35529)
                     /locus_tag="JBH85_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 and DUF4163 domain-containing protein"
                     /protein_id="HAU0944661.1"
                     /translation="MPIQMNLINKIGLMFGLLFYSFLASAITTEVIKKETAEYLLDIK
                     YPQGFQSNGVNQAVKEFITNQQKSFMNELSEDADTPADAPGKTGLNITYAIPYQSTNA
                     LSVRFNISIYHRGAAHPSNAVKVLNFIKNQPVQLSDLFVPGSDYLQPIADLAKKEITA
                     KKISDENWIKEGTKPTQENYSIWHFTKKGIAIVFNTYQVAAYVYGEQTVDIPLSLISA
                     MVKPEISKAVWGN"
     gene            complement(35556..36809)
                     /locus_tag="JBH85_00455"
     CDS             complement(35556..36809)
                     /locus_tag="JBH85_00455"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HAU0944662.1"
                     /translation="MVEAASPGTSLGILMFACDELLLNASTIDATGLQLSNQAIVIKK
                     GRIEWCGSEDQLPAHFQESAKSRKDCHSQLITPGLIDCHTHLVYAGHRAAEFRLKLQG
                     VSYADIAKSGGGILSTVQMTRDASEEELIDQSLPRLLALKNEGVTTVEIKSGYGLDLQ
                     NELKMLKVARQLGEMAGVRVKTTFLGAHAVGPEFKGNSQAYVDFLCNEMLPAAKNMDL
                     VDTVDVFCESIAFSIRQAEQIFQAAKDLNLPIKCHAEQLSNMGASSLAARYGALSCDH
                     LEFLDENGALNMVKANTVAVLLPGAFYFLKEKQKPPVDLLRQVGVGMAIATDSNPGSS
                     PTTSLLLMMSMACQFFSMSIPEVLSAVTYQASRALGMEKDIGSIEAGKIADLVLWSIK
                     DSAALCYYFAYPLPHQTMVAGEWVS"
     gene            complement(36767..37576)
                     /locus_tag="JBH85_00460"
     CDS             complement(36767..37576)
                     /locus_tag="JBH85_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0944663.1"
                     /translation="MSGIISPIVFYIDEEIVYLITGGGSGIGRALAFALAKRNKQVFI
                     VGRREKLLQETASLSANIHYLCADVSTPQGRELIKASLSTTPQIDGLINNAGTLEPTL
                     LLKDISFAEWHQALNTNIDAALFLPQLLYDKLSGGRVLNVGSAAAYFPIKGWGAYCVS
                     KAALAMLTRCWQIECDSLAFASVMPGIIDTHMQAIARNGINLDPEQVNFYRRLKDHNR
                     LISPETVAEFFIWLLLDIDNETYVSKEWDIYDTTHHSAWLKPPHQVLHWEF"
     gene            37867..38826
                     /locus_tag="JBH85_00465"
     CDS             37867..38826
                     /locus_tag="JBH85_00465"
                     /EC_number="3.5.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamase"
                     /protein_id="HAU0944664.1"
                     /translation="MFDDLSNYRPANPALWQGRKDTTNQERFFQKITFIDNQNELMTK
                     DKKTIFLGFASDAGIKRNLGRTGAKLGPDQIKTQLAKLPCHNNKHYVDLGNVVCENDE
                     LELAQSQFAQIVHFCHENGHQICAFGGGHEIAWAHYQGLSSLYPKLGVINFDAHFDLR
                     PYKKGEFGNSGTPFSQIATYCEEKKMPFHYCCIGVQKFGNTPSLFEKAKKLNVSYLSA
                     EDLYEQSQAWQIAFLDDFILNLDHIYLTICLDVLAECYAPGVSAPQALGLSPWQIMPL
                     LKYLIQSGKVVSLDIAELSPPLDSELKTARLAALIIAELLDTN"
     gene            38839..39813
                     /locus_tag="JBH85_00470"
     CDS             38839..39813
                     /locus_tag="JBH85_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmL"
                     /protein_id="HAU0944665.1"
                     /translation="MKKTVLWGALFTLITTQANSEATQQAISTQNSASTGTNVVSEST
                     NQVPATNQNTQQNQLNQPVQSNGQQPTQAIQNNQQNQPSQTGEQQSNQNIQNNQQNQP
                     AQQQTTQQPAQQQVPSQQTAPVINCDYKISAETKAIEQSLVLTWSEKAIIQSFDFDPA
                     TVDAQLQKLQACFTDQGWLSFNSALQKSGNLDAIKSQKLHVSSQIDGQPQVTEAIENQ
                     WKIIIPLQVVYQNDKEKVTQLLNVNVTVGRKITGDLGINQMIAVPRTATNTSQTNSPS
                     NTNPADSNTSTSQTPGDTTNNATQTNTQTQTGTPTNSPPSGSTTNTQN"
     gene            39870..41042
                     /locus_tag="JBH85_00475"
     CDS             39870..41042
                     /locus_tag="JBH85_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944666.1"
                     /translation="MRLIFTGVLCLLTLNAQANVIQYFAGISYNNPADLFKVKNGILL
                     VGGTGSYADLQFKGSALNFNTFQYDSGVNHSRTYIVWPYGRVAKRLNDKTVVAVDLTE
                     PFNSNLDWGNDAFTRYAATQNYLTDVDLSPKISYAISKKLQIGGGINFNVLLKNEVNW
                     AFPTGQSTYANLINRSSSFGVGYNLGINYAVNDTNFLGITYYSRIRQNTSGTSYLGLA
                     ANPDFQFGFYMPATTVASYVHIFNPKWLINLQVFQSEWNANQKVRLYNTAAPPPFTNF
                     IFDMHFDASYAYLAAIRKQVSDKLGIALAGMIDDGPEEDGLRTIVFPSDTQYFLGLIG
                     DYRFTEHASMELILGHVYSNPSIQNKAKVNNVPVPFTTGRVTINANVLDLKVKIEG"
     gene            complement(41082..41615)
                     /locus_tag="JBH85_00480"
     CDS             complement(41082..41615)
                     /locus_tag="JBH85_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAU0944667.1"
                     /translation="MWTGQIFQALLYSDTAFYLICNDYCVSDKTCGRIILMYNIMSFL
                     CGLLFGAGLTISNMINPNKVLNFLDINGFWDPSLLIVMAVAVTVTFLGYKLINKFDKP
                     ILCNQFYLPEKKNIEKKLILGSIIFGIGWGVAGYCPGPSITALTTFNSDPVYFVIGLI
                     AGSWTYYWLFKKRTIQK"
     gene            complement(41507..41944)
                     /locus_tag="JBH85_00485"
     CDS             complement(41507..41944)
                     /locus_tag="JBH85_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HAU0944668.1"
                     /translation="MDYITSFTPYLSAIGGLLIGLSAVLFLWLNGRIAGISGMVHGLF
                     PPEKPFPVWRIAFLLGLAAAGLIYFISPVIQFPLRTHYPVFLLLIGGFLVGFGTRMGQ
                     GCTSGHGVCGLARFSKRSFIATLLFILSAMITVYLIRHVGGLY"
     gene            complement(42054..42665)
                     /locus_tag="JBH85_00490"
     CDS             complement(42054..42665)
                     /locus_tag="JBH85_00490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAU0944669.1"
                     /translation="MKKIYWAVILMCLGLTSCVEFDESTLITDDAGYVHRTVHYLRDK
                     RGRNYFPMQIKAPGERLFVFDPKASAWAAYDEEGHRVMTGAGSGGIDVCEENPNQSCR
                     TITGTFRIYNKRGIDCRSGEYPVDTKGGAKMPYCMYFYRGFTIHAAYEVPEHPSSHGC
                     VRVFPSAAKWLNEEFLRVGTKVIVLAYPDQNGVKTMSSLEKVN"
     gene            complement(42707..44380)
                     /gene="ettA"
                     /locus_tag="JBH85_00495"
     CDS             complement(42707..44380)
                     /gene="ettA"
                     /locus_tag="JBH85_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HAU0944670.1"
                     /translation="MAQYIFTMNRVSKIVENQRFILKDISLSFFPGAKIGVLGLNGSG
                     KSTLLRIMAGVDTQYEGEARPQPGIKIGYLAQEPELDLSKTVREVVEEGVAEIKEKLS
                     RFDAISMRFAEPMSDDEMNALLMEQGELQNEIEACGGWDLERKLDVAADALRLPEWDA
                     IIGKLSGGERRRVALCRLLLSSPDMLLLDEPTNHLDAESVAWLEHYLEEFSGTVVAIT
                     HDRYFLDNAAEWILELDRGEGIPYKGNYSSWLEQKEARLSMEKKQEDALQRAIKAELE
                     WVRTSPKGRHAKNKARLARFEEMNSKEFQKRNETNEIYIPPGERLGDLVLEGEKICKS
                     YGDRILIDNFDFKLPKGGILGIIGPNGAGKSTFLKMLTGQEEPDKGVIRIGETVKLAY
                     VDQMRDNLNPNNSVWQEISDGHDIMQIGNFQMPSRAYVGRFNFKGTDQQKKISQLSGG
                     ERNRVHLAKLLKSGGNVLLLDEPSNDLDVETLRALEEAILNFPGCAIVISHDRWFLDR
                     ICTHLMAFEGDSQITFFEGNYTEYETDRKRRLGDEANRPSRIKYRKLSD"
     gene            complement(44423..45445)
                     /locus_tag="JBH85_00500"
     CDS             complement(44423..45445)
                     /locus_tag="JBH85_00500"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003632552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HAU0944671.1"
                     /translation="MKSLVKAKKEPGIWMQDVPVPEYGVNDVLIKIKRTAICGTDIHI
                     YSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAG
                     KRHLCRNTLGVGVNRPGCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAF
                     DVVGEDVLITGAGPIGIMAAAIVRHIGARHVVITDVNDHRLELARQMGVSRAVNVKYQ
                     KLSDVANELGMLEGFDVGLEMSGNPMALNDMMKAMNHGGHVALLGIPPQETPIDWNQV
                     IFKGLVIKGIYGREMFETWYKMIAMLQSGLNISPVITHNFPVDEYQHAFQIMASGQSG
                     KVILNW"
     gene            complement(45534..46718)
                     /locus_tag="JBH85_00505"
     CDS             complement(45534..46718)
                     /locus_tag="JBH85_00505"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094737.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HAU0944672.1"
                     /translation="MLERFINYLQNELETLKADGLYKSERVISSQQQADVKVNEREVI
                     NLCANNYLGLANDPELIAEGQAALAKYGYGMASVRFICGTQTPHKQLEQKISHFLNKE
                     DTILYSSCFDANTGLFETLLTEEDAIISDALNHASIIDGVRLCKAARYRYANNDMKAL
                     EEQLIAAKNARFRLIATDGVFSMDGILANLPAICELADKYDAMVMVDDSHAVGFMGKT
                     GRGTPEHFGVSDRIDIVTGTLGKALGGASGGYTASNQVVIDWLRQRSRPYLFSNTLAP
                     VIAHTSCVVLDKLSTNNSLAEKLKRNSHYFREGMTQLGFELIPGEHPIIPVMLGDASL
                     AGRIANRLLELGVYVVGFSYPVVPKGLARIRTQMSAALELHHLDKALKAFETVGKEFS
                     VI"
     gene            46875..47549
                     /locus_tag="JBH85_00510"
     CDS             46875..47549
                     /locus_tag="JBH85_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HAU0944673.1"
                     /translation="MIIKTVEQMNHSARINMIKQQLRTGDVLNESILDLYDEILRHEF
                     VPEPFSHFAYSDMQIPLAHGQRMLTPLEEGTILQSLDLKGHETVLEVGTGTGFMTALL
                     SKLCKKVISIDYYSEFTTNAKRKLEEHNCNNVELITGDACRGWLESAPYDVIVFTGAM
                     EKLTDTHKLQILPGGKLFAILGKSPVMKAYLFQLDHNAIWTESMLFETDIPPLVDQLK
                     PKEFVF"
     gene            47561..48928
                     /locus_tag="JBH85_00515"
     CDS             47561..48928
                     /locus_tag="JBH85_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HAU0944674.1"
                     /translation="MRKSLFCWILTLGVSTHAFATDLMDIYQQALENDTIFKEAYDTY
                     MSSTEAIPQARAALYPQVGLGSQAGRNYQDAVAGAFSANQYYGSYLWQVKASQALFNY
                     QAWAQVAQAKASVKAAQASFNDAAQNLILRTAKAYFDVLFAKDTLDFAEAKKRANKRQ
                     YDQATQRFQVGLDAITSVYEAKAAYDQSIATVIAARNNQINQSENLRKLTNHVYETLA
                     PLKDSKIPLVKPEPNDVNQWIDTGLKQNYKLYAAKYNLEVAKENVKAISAGNWPVFSL
                     QSNASQVHNNASGNNVFIPSKQTQANIAIAMNFPVFQGGLVQAQTRQAQYNFQSTSEK
                     LEQTYRDVIVNSRIAFNTITDGISKVKADRQTVISVQNSLQSTEAQFEVGTRTMVDVV
                     NAQQRLFEAQEQLARDQYDLINSILTLKYLAGTLNVNDLEQINSWLATTRVNGFSPVD
                     NKTSK"
     gene            48946..>49769
                     /gene="ttcA"
                     /locus_tag="JBH85_00520"
     CDS             48946..>49769
                     /gene="ttcA"
                     /locus_tag="JBH85_00520"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HAU0944675.1"
                     /translation="MSSNPSSVEKKLLHYTGKAIADFNMIRRGDRVMVCLSGGKDSFT
                     LLTILNQLRIKSGNKFEIFAFTLDQAQPGWNDACLRQWLAEKSIPHEILTRDTYSIVK
                     EKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHRDDLIRTLMMSILYNGDIRS
                     MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFPIIPCNLCGSQENLMRKKVASLI
                     DQLAIENPKVPSNMLHALQSLKPSQLMDQNFWNFKNLEDGLETAQSVQCEEVFNAQ"
BASE COUNT        15595 a        10639 c         8947 g        14588 t
ORIGIN      
        1 aatgaatttt cattaaaatc caatagagaa acatcaggat aattaaagga aagatataga
       61 taagctgata agcaaattga tatagcccca tctgaactcc tgatacattt tggttatgta
      121 accattgttc aaacacataa gaccaattca tcaaacaggt ttgttgaaac attggcactg
      181 taagtgccaa taaaaaagcc aaaacaataa ataatggttg gatggaatgt tttttataat
      241 attggccagc gaaataaaaa gcaaaaaggc ctaccaatgc agccggaata cgaaaccatg
      301 aaagcgactc aaaaaacagg gtaggataaa cctgttgaaa ataatgaaca cctgcaacag
      361 ttaaaataaa cacggaaccg ctaataaatt gcagctttcg cttttcaatc atgaataaaa
      421 cacctaaaaa tgcagcaatc gtaaataaag cacatggact gattgcatcg attaaggcta
      481 caacaaaaat aaatgtattt gtggaagggc ttcctgtgat attggaatca aacaaattcg
      541 cattccccca tctgtttaaa acactctcgg tcgcaggagt caatcttcca tttttcacaa
      601 tttcttcttt acaatattct atgccgttta acagatcctt tccggttgtc tgtgcagtgg
      661 caaacccaac ccaacgggaa ttacaaaaaa atatggatgg aacggcaaaa tcatatcgat
      721 taagttctgt caataaatcg ccaaagcgtt tcaaagcctt tttgtcttta tcaataatat
      781 aacgctcaac atgcagccaa gtataatgtt tttcaatttc tttgaaaaat tcatcggcct
      841 tatgacaatg aggacaagta gatgaaagat acaattcaac gttaattaca agccctttac
      901 ctttttcttc tgtataccag ggagatgaag aatttatcgc ccataaatta aaactgagca
      961 tcagaagtaa cattgtcaat cgaatcattt gcttcatggt tttcattata tttctttgta
     1021 aatgaatact atagcactta ggatcgattg tatgaaatag ccaaaacaag actctcgcgt
     1081 ttaaagcaat aaaatgtaaa tctgaaataa aagcttatat ttcaggagtg aatataattt
     1141 tccaaatgct caatcactcg caatttatct tccagtacgt ggtacaacaa gtctcctatt
     1201 gacagtatag ctaataactc accttcttcc tgtattaata catgtcttct ttttgtttca
     1261 gttatcactt gcatggcttt ctctaccgaa tcatgtggac ttaagatcgt gacgttgtta
     1321 taaacaacat cagatacttt tgcagtttcc aaacttagat tcttatgaaa ataacagcga
     1381 agtatgtctc tttcactcac aataccaatc aagtgggcat cattgtcgaa aacaactaaa
     1441 gcacctatat ctttttcaac catctgttta atacattctt tgacactatc atcaggatga
     1501 atataagcga ttttccttgg tggcaccggc agtacgctat gaattaagtg agccattgca
     1561 ctctccctga ttaatactaa attagcaact cgctgtataa atatagcaca aaacaaggag
     1621 ggttaagctc attaatcgag agcaggaaag atttttataa aagattatcg taggatttgt
     1681 atattgaaaa ctccaaggtc aaggcaaaaa atgattttaa tgaaggaatt tagataaact
     1741 aaatgactga attaaaaata tttttaacat agagatagga gtttttcgta agtcctgtct
     1801 taattaattt gagtaataaa atgagattgt tgggttttcc ccaacaatct taatcaatta
     1861 attaattcac aacacgccag gaaccatcag cttggcgaca ggccttacca taaatttgtt
     1921 gggttttacc accaatcatg gctttggtaa tatactcacg gcaaggttgt tgagcattat
     1981 aataagttct cgttggctgg acagtataac ggtatccagt atccggattt gaccatgcaa
     2041 ctgctttacc tgttggagct gtttcgaggg ccctttgcat ttcaagtcgg tctactttat
     2101 ccattgtctt tccaatttga ccacccaggt aagctcctaa taatgctcct gctcctgcag
     2161 ctgcaacctt acctgaacca ccaccaaact ggctaccaag taatccacct accacaccac
     2221 ctgtaattgt acctacacct tctttgttca ttgaggcaca gccacctagc atgaatgtta
     2281 gggataatga tgcaacaatt aattttttca ttacagttca cctgtttaaa gagttacaaa
     2341 atcggttgtc attctaccat cacgaacagt tattatccat aacttatttg taacgtactc
     2401 tctccgaaat ttgacataat aattcgtatc ctactgtacc tgctgatttg gcaatgcgct
     2461 ctactaaaac atgtgttccc caaagctcaa cttcatcgcc gatctcaaca tcagggtgct
     2521 ctgtcaaatc gatggtcagc atatccatag aaactctgcc aacaatagac acttccctcc
     2581 ctctaaccca aaccggtgtt ttctcggaaa tatgccgtgg gtacccgtcg ccataacctg
     2641 ctgcaacaat gccaattcgc gaaggtttat cgcttttcca ggttccacca tagcctacct
     2701 gagcaaaaga tgggttatca tgaatcgcgc tgatggctga cataaaacgc atgacaggga
     2761 ttaaacttaa atcacgggca ttttgattgg caaatgggga aacaccatac aacataatcc
     2821 cgggcctcac cacatcagca tgggaatcag ggaatgaaat aattgccgcc gaattagcga
     2881 tactgcgttg gcgaaatcca ggtatggata tctcctgaaa caaagagatc tgttgttgat
     2941 tctcaggacg atgaggctca tctgcgcaag ccaaatgagt cattaaccct atatttttat
     3001 caacccaggt acaggtttgc aatgccccca tcactttttg caattcatgg attttaaatc
     3061 ccagtctgtg catgcctgtg tttactttca cccatatttt tatcgggtaa ggcaacggag
     3121 tcttgattag ccattccaac tgctgtgcgt gatgaagaat acaggcgaaa tcattctcaa
     3181 cggctactga caattcatca gaactaaaga cgccctgaaa gagaatgcac ggggtttcaa
     3241 cacctaaagc tcgaatagcc agagcctctt caaggcaggc tactccaaaa gcctcaatac
     3301 gcccatcaag gacaggggca acttccctga ctccacaacc ataagcattg gcttttacca
     3361 tagcgataac ttttttgcct ggagctaaat gcttgatttg agataaatta tgcaataaag
     3421 cactgggctc tatcactaaa cgtgtaggtc ttgacaccct attctacccc ttgataacca
     3481 ttaaatgcca aatcttcaaa tcgtgtgtac ttacccaaaa aggccaccct gactttgcct
     3541 atgggtccat ttctttgctt ggcaacaatg atttccgcag tgcctttatc aggactgtcc
     3601 tcattatata cttcatctct ataaataaaa cagattaagt cagcatcctg ttcaattgct
     3661 cctgattctc gcaaatctga catcactggc cgcttgtctg ctcgctgctc gaggcttcta
     3721 ttcagctgag ataaagcaat tacgggaacc tgtaactctt ttgccagcga tttaagactc
     3781 cgagaaattt cggagatttc cgctgttcta ttgtctgcat taaacccggg cactttcatt
     3841 aattgtaaat aatcgacaac gataagccct aacgaaccat gttcctttgc taaacgtctg
     3901 gcacgggccc tcatttctcc aggacttaaa gctggagtat catctataaa caaaggagct
     3961 tcagaaagca tatgcaccgc ggaagtcact cgtggccagt cattatcatc taatttacca
     4021 gtacgaatcc gatgctgatc tattcgcccc aaggaagaca tcattctcat tgccagggaa
     4081 tcagcaggca tttccataga gaaaaccaat actggcttac cggctttaat tgccgcatgc
     4141 tctgccatat tcatcaccaa agttgttttt cccatcgatg gacggccagc aacgataatc
     4201 agatcagaag gctgtaaacc cgatgtcatt tcatccaaat cggataagcc tgtcgcaagg
     4261 cctgtaatcg catcaccatt atgatagagg gcatctattt tctctaccgc ccgtaccaaa
     4321 atggatttaa tattttctgg acccccgtca ctcgctgttt gttcaccaat agcaaatact
     4381 ttggtttcag ccatatccaa tagctcaggc acttctcttc cagcaggatt ataagcggaa
     4441 tcagcaattt ctgttgctac cgctatcagt tgcctctgga ctgatttttc ccgaacaata
     4501 tccgcataag cggtcacatt cgctacactt ggtgtgttat tagccaactc aaataaatag
     4561 gcttctccac cagcatcatc taactcgttg cgtgttttta aagcatcaag aagcgtcacc
     4621 acatcaaaag gttgatcttt tttggctaaa gcagaaatgg ctctaaaaag aattcggtgc
     4681 tcagtacgat aaaaatcggt ttcgcataat ttattgctta ccttatccca gacttgatta
     4741 tcgagcatca aaccaccaat aatggattgc tcagcctcta cagaatgagg ggggcgtttt
     4801 agtggatcaa ccgttttttt agatatttgc aaatcaagca tggtaataat attttttgag
     4861 aatttattta tagggaagac aatttattta aagacattcc taatctaatt gcaaatgatc
     4921 ataacactaa aaacaaaatg cgggatagta ccaactgctt tcaatgacaa gagaaagcag
     4981 ttggtactat cccacattat atataaaaac atccttcagt actacttatc gaatccaggt
     5041 ttgagtacgt cctagagcag aaactccaaa ataccctctg acatacagtt tattaccctg
     5101 cagtgtcatc ttagccttat aaatttttcc tgttttggga tcgaggatag agccaccact
     5161 ccagacaccg ttgccttcat cttttaatcc ccaaacaaaa gtcaaccctt gaattttttt
     5221 gtccttgaat gcgccagggc acttagaaca aattccggta tcacctggtt gtggatatac
     5281 cttcacaata gtaccactta aagtaccatt tgatacttta aggttaacta ctgctctctt
     5341 agctccggtt ttatcatcaa tggttgtcca ggtaccggca ggagactgtg atgctgcaaa
     5401 ggctaatggt aaataacata cagcaattac aaaactacat aacactttcc ataatttcat
     5461 aagtaatctc cgtaattgaa tcagtatacc tcttgtataa attctgtact cttttggaat
     5521 acaaagttca agttatacaa gagcttgtaa taaagcataa gccatgatag gtaactttgc
     5581 tactgaaatc tttaaaataa atatagggtt tattatccgc tccctggcgg tcgcggctcg
     5641 gattatggat caaaccaatc ctcaaccatc aaaccgagcc gcgaccgtca gggagcggat
     5701 aataaaccgt tacttttatt cataaaggca taaaaaattg attcaaatct tcttcactta
     5761 aaaccattga cctggaagcg tctgtagaca aaatcccttc cactaattgc cttttcttct
     5821 cttgcatacc aagaattgcc tcttctacag tacctgatgt aatcaacttg taaacaaaaa
     5881 cagggctttc ctggcctatt cgatgtgttc tgtcagtagc ctggtcctca acagaaggat
     5941 tccaccaggg atcataatga atcacagtat ctgcacgagt cagattaagt cctgtgcctc
     6001 ctgctttcag actaattaaa aatattggcg tatcaccttg ttgaaattgc tcgactaagg
     6061 cttgtctgtt ttgggtctgt cccgtcaatt tcaaataatc gtattgcctg gctattaata
     6121 attcctcaat cagttttagc atcgatgtaa attgtgaaaa taccaatact ctccttccct
     6181 cttcaaccaa attatcaagc aactccatca gtgcatcgag cttgcatgaa gtaccatgag
     6241 cgatctcggc ttcagacata gacaacaatc ttggatcaca acaaacctgc cgcaatttca
     6301 acaaggcatc aagtaataat atatgacttt tccccaatcc ttgccttgct atggcatctc
     6361 tcaccttttt ttccatgctc atgcggatag cctcataaag atcccgctga gcaccaacca
     6421 actctatagt acgagttatt tccgttttag gcgggagttc attggctacc tgatttttgg
     6481 ttcggcgcag taaaaaaggt tgcactcttt ttgctaacaa atcccttctt cccatatcgg
     6541 catatttttc tataggcgtt ctgaaccaaa gcctgaattg ctttgcatca cccaatagcc
     6601 cgggcattag aaaatgaaat aaagaccaga gttcgcctaa atgattctct agtggagttc
     6661 cagtaagaca taaacggtgt gaagccttta attgttgaat gatttgtgtt gtttttgtcc
     6721 gtgcattctt aatgaattgc gcttcgtcca aaatgagata ataaaagggg tatccaacaa
     6781 atttttcttt gtccctgtga attaatccgt aggtagaaat aattaaatca taatcatcaa
     6841 aattgtcctg atgtctatca cttccatggt aaatcaatac tttgatctct ggcgtaaatc
     6901 gcttggcttc ggcaaaccaa ttaccaacaa gactggtggg agctatgatt aaactggctt
     6961 tatgtaatct tgattgttct ttctcatatt gtaaatgggc gagagtctgc actgttttgc
     7021 caagtcccat atcatccgct aatacgccat taaaacgact gacccgcaaa aattgtaacc
     7081 aatttaaccc atagtgttga taatccctca aatgagcttg aagaccagat ggaaccttta
     7141 tttctggcag atcatttaat ctgaccagct tccttaattc ttctcttaat gattcagcac
     7201 cttgccaacg tgatttggtc gcagcaatag ccaattcaac ttcctgcatt aataccagtt
     7261 gatatttatt aatctgtaat tgctgatttt gatcaatttg gcgcaagcca aactgtaata
     7321 acaaacggac caatggctta attcgcccca tgggcaattg caataaacga ccatccaaca
     7381 atgggagttt aaccagctgc tcatcaggta aattatctaa atcattccct ttgtaacgtt
     7441 gaatcaaatc cgcaaccagc ggcacaatac tcactggctt gccttcaacc aaaataccca
     7501 attgatagga aaaaaaatcg gtcgtacttt cctgaatatc ggaataccat tccacttcat
     7561 cagcagaaac aatctcttga taaaacgggc ttgcaaactc tatacgccat ccatggtctt
     7621 ttaaataagg taacgattgc tgataaagac tttccaagtc tgaaacaatt tgcacatctt
     7681 ttaaaataaa aaaggagtga tcgggtaaat tccaatggta tttttcccat tgatgaaatg
     7741 gcctcaaatc aattgaattt ctcaactctt gaatttttaa atcttcaaat tcctgatcac
     7801 gttggtattc aactaataca tctcctttta aagacaccac tttttcacac tcttccgcaa
     7861 aaggaacaag caatccttca taatcaaaaa agatttttgc tatataaaga gaattatttt
     7921 cctctccgtc atcaatccac ctgtgttctt cctgttcggt aaccgcatcg agaattaaca
     7981 caggaattgg ttttaattgt ttcgtttcct tttgattaaa cacattgggc atgggaaatt
     8041 caggacaatt tttagacatt tttttggcca ataactctgc ttgatcaaga gggataggtg
     8101 gtgcttccaa caaatgacga agctgcttga tgggataagg agagtttaag tgacctatta
     8161 ccgcattttt aatatcaaaa taccaacttt catccaataa taatggctca atattctgat
     8221 tatcatgcct taattttaaa atctgattgc cattccagga taaaatccac tggcattcac
     8281 cagtcaaagt ctctcccttt tttataggga tatcctcatt ttcaataaaa aaagctcttc
     8341 cagttgcaat gatcttatca agaagctctg tattccgaat caaaagatta tcaaaccaac
     8401 cggatacatt acatttaaat aacaattgag ccacgatgtc attatcatca cccataaaat
     8461 gttgtttttt tgaattagcc agagtattaa agattatttt ttttccgtaa ccgccgcgtt
     8521 ttaatagttt ggccaaagct aatttaatgc ttactttgtg ctcataaccc cgaagcttta
     8581 aatcaatcaa ataaatcaga tggtgtgtcg cctcctccct ttttatttct gatgcttctt
     8641 gtgctcgtaa attttttaac caaacatcta attttcgatc tagtttgtta gaaggcagtg
     8701 actgcaggtt tattttttct ctgtctctta atgcaaaaag acaagctgcg gcgtgtttgc
     8761 aattatattg ataagcacat gaacatcgag aaggttttgc tggccatgat tttaaatcca
     8821 tatggatatc ataaatttga cttgcactac ccttcactct ccctttgagc aagccgtcac
     8881 ttaagcgaat attcaatacc tggccttttt gaaagtactc ttcaccccga agcaatattt
     8941 tagcttcaaa agcctctggc atttttgata ttgcttcgtt taacatacct aggatttgtc
     9001 caggaaaaat cgtatattgt agtcattttt tacgcttttt gacaatagaa tgggttgttc
     9061 tatccgctcc cttacggttg cggctcggtt ttaaccatga tcctatctga ctcagagtga
     9121 accataatcc gagccgcgac cataagggag cggataaatg caaaaataaa aacttctcca
     9181 attaacccga ctaccatcct cttcatctgt agccatatca atgccctcta agctacaatt
     9241 cctatatacg aattaattga cagattttca tgaatgcacc cttgacagta ctgatggctc
     9301 aaattaatcc aacagttgga gctattgacg cgaatacaaa taaaattctt gatgtcatca
     9361 aaaaccatca ggcaagccat gatgtgatta tttttccaga attaactcta tccggttatc
     9421 cggcggaaga tttactcttt cgtaaagaat atcatgataa aatactgatc aacctccatg
     9481 atattcagga tactaccaag gattgttatg tcattgtcgg acatccaatg atgcacattg
     9541 gtgattgcta caatggcttc agcatctttt atcaaggaga aaaaatcaga gaatatcaca
     9601 agcaaaaatt gccaaattat ggagtttttg atgaagcaag atattttact cccggtaaaa
     9661 aagatccttg tgttttatca attaaaaatc ataaattagg gttttgcgta tgtgaagatt
     9721 tatggcaaaa aggtcctgta gacgatttac ttgacagtgg catttccatt ttaatcagtt
     9781 taaacgcctc cccctttgat tatcgtaaat accagctgag agaagagctt ttaagatctt
     9841 atgctaaaca gggggtgtcc attatttatg tcaatcaaat aggtggtcag gacgatttgc
     9901 tttttgatgg gcaatcttta gccatggata atcaaggtat tatccgtgcc ctggctcccg
     9961 cctttgaaga aagcttatgt actgtcaata tagacggtaa caaaatagac ggatcgatca
    10021 ccccttatct tgacaaagaa gcacttattt ataaggcact ggtttgtggt accagagatt
    10081 acgtcagaaa aaacaatttc cccggcgtac tgctcgggct ctccggaggc attgactctg
    10141 ccttaacgtt agcaatagct gtcgatgcgc tcggagcaga gcaagtccat gctgttctga
    10201 tgccctcacg atataccgcg tcaatcagca atgaagatgc actggaacaa ttaagcaacc
    10261 ttaaagttgc acattccatt ataccgattg aacccatgtt tcaatctatg attgaatcgc
    10321 ttcatcctgt ttttaaagac ttgccaccgg ataccacgga agaaaatatt caggcaagaa
    10381 tacgtgggat gctgctcatg gctttgtcaa ataaaacagg gaaaatggtt cttactacca
    10441 gtaacaagag tgaaacagct gtaggttatg ccactttata tggcgacatg gccggcggat
    10501 ttgccgtatt aaaagatgta ctgaaaactc aagtgtatga attagtgagg tatagaaaca
    10561 agatttcatt ggttatccca gagcgagtca ttaccagacc cccttctgct gaattaaaac
    10621 caaaccagac agatcaggat agtttacccg aatacggtga actggatgcc attatcatgg
    10681 cttacatgga acagaattta agtccctctg aaatcattgc caaaggattt aaacctcaag
    10741 tagtcaacaa aatcattcaa ttgattaaac gtaatgaata caagagacgt caggctgcac
    10801 caggaataaa gataagtaat ctggcctttg gtaaagactg gagatatcct atcactaatg
    10861 gttttaatca atgcatttga atgcaataac tgccttgaaa taaaattcaa ggcagttatt
    10921 gcatttatta attaaataga tcttatagag agactatcat ttggttttga ttgttgtcct
    10981 tcgtgttgct ccatgttttt cgctctgtta ccgaacaagg tggcaatatt ctcatattta
    11041 tttagattaa ttttaccagg ttcttgtatt gcagcctttt cttcttgcct ttcacttaac
    11101 tggcttctca aacaccgttc aacgtctcca aataagcgca aatccagttt tttggcattc
    11161 gtcgtcttgg ttgcgccact ggcaggaggt gttttagatt ttggtccggc agccagacat
    11221 tcctgcaatt gagctttaaa ttccttcatg tcttccttga catcaatgga cttgacagta
    11281 tttacattca gtaaataagt cttaagttga ggaatgtgct cttcctttaa cggatgactt
    11341 tgatcattta accatgtttt catagatgca taggattcta atgaaatttc atgtgcgaaa
    11401 cctaatgtat ttatccacca caatgaatat tcattaggtt taccgcgcaa aacaaaagta
    11461 gcagaagtcc cattttcttt taatacatca ttagtcaact cagcttgagt tctcggatct
    11521 ttcggattga tgagcagttg aactcgtcct aaaagcattt ctcgggcttt tacacactcc
    11581 tgtttaagct gcttcaaatg caaagcactt agattatcaa tatccttaac gatatcctga
    11641 atctttccgt ctattagaat ttggattaac tcttctccgg gttccaaagc atagactttg
    11701 cctgttgcag ctacccagga aagcttccaa atatcacttt caaaaattaa gcaaaattgt
    11761 ataacaccct tattttcttt ggctgatttt ttagctgctt ccaggtcatt ggtaattgaa
    11821 acattatcga taaatttctg agcactttga tgtgtctgta acaattcctg ttttcgagct
    11881 tctattaatt tttgggtagc caggtattgc gacataaact cgtcaattct tttatttatt
    11941 ttttgtctga gcttcaaaat aattggatgg actaactcac tttctaatgg tttatagcca
    12001 ggaactgact tgataagctc atcaaataaa taataattaa acgatccatg ttcccactcc
    12061 cctttcccaa ccaataactt aaactcctgc aagcgagtgt aggcatcagg gaacgcttcc
    12121 atgcctttaa ttgccatatc aatttcttgt ccgcgttttc tggtaaactg gtaaaaccaa
    12181 cctttaagcc atgattcaat gggcttgtta tatcttgccc gggcagattc taagacatga
    12241 actaattgct tacacccttc atcggattca tccgcaatcc gacttaataa cttttcggca
    12301 aattcgttta aattgtcaat tatatccaat aattcttttc catcctttgg tggcatatac
    12361 gctccttgtt ccttgtccaa atttcatctt accttaatca gaattttata caagcaacaa
    12421 aatcattgag ctaactggaa tttaaaattt aaattgctca ataaagcgca atagaaaact
    12481 tgcaaattta agacaaaccg ctaacatgaa tcagttaaaa aataataata ataaaaaggg
    12541 atgtcatgag aattacatta cttacaacag ctatattagc tactggtgtt gcctccgccg
    12601 cagtacctgt agacgggtgg tatgccagcg catttggagg ttacacctat attcctccca
    12661 acatatacaa tttcgcttat ggggtattcc gtgatgaagt gggatacaat aacggatata
    12721 acgccggagg acgagtaggc taccaaagca acccaatccg ctatgaagta gaatacacct
    12781 atctcagggg tgaagccaga aagtttaatc ttaactttat aacacagctc ggtgttaccg
    12841 gttttacctc cgccaatact atcatggcca atatttacta tgattgccct gatatgctgc
    12901 cagccatagc gccatttatt ggattgggga ttggttatgc ctctcttagg acagagcttg
    12961 acagcatagg tccttttaga ccgtcttact ttaccaccag cgacagcgcc ttcgcctacc
    13021 agggaactgt gggaataact tataatttct ccgaaaatta tgcggcaaat ttggcttacc
    13081 gctatatcgc aaccgataat tcgagtaatt ttggaaaaac ctaccaggct catttggcca
    13141 gcgtgggagc aatctaccgt tttgatcaag gaaattataa gtaaggatac gcaatgaaga
    13201 agttaattca actctcggta ttatccggtt tgctattaag cggttcaact tttgctttca
    13261 accagcctca aggcttctac gttgggatat tgggggaaat aagtcatggg ccttctggtg
    13321 aggaccttat atttaccgaa cccaaccgaa ccattactgc caacgtggaa tatagtcctg
    13381 tttctggagg tggaggggct gtattaggtt ataaaataag ccactatcgc attgaaggtg
    13441 aggtactata taaccggatt tcaactggtc ctttcacaat aagttcctgt actttacaaa
    13501 gtcctaatgt cctaactcca acaggcgttt gtccttccgc ttttgaagtt aatcgactag
    13561 gttatgatgg cagtagtgca gctctctatg gtttgctcaa tctgtattat gattttttca
    13621 gttctgtgaa tgaaagtact tatgtacctt atattggaat aggcgcagga caagtacgta
    13681 ttcaaaatag aaataatttc gtaaaaacaa cacccgtcaa tctgccggct tcagctggat
    13741 ttagcaccac catggtctca ggagctggac agggcattgt aggcgtaggg tatctaatgg
    13801 atgatttcgc ctggcttgct atggacttcc gctttctcac gaccagtagc ctgtctgact
    13861 ttaacaacag tcgctataca ctcagcacat tcaatgtggg tgttaacttt acctttgaca
    13921 agtcaacctg atgacttctt gtggccttgg ggttcctgcc acaaggtcac aaacaaaacc
    13981 atcaccatag gccctagaaa caggccaagc aaacccaaag tttccactcc tcccaaaatg
    14041 ccgaacaaaa cagcaaggaa aggtaattgt atcgctccac cgataagaac tggctttaca
    14101 aaatgatcag caacaaacat aaccaaagtt ccccatacca gaacaatgat gcctccaatc
    14161 aaactgccaa cggaaagtaa aatcaaagcg actatgataa aaacaatggg aacaacaaaa
    14221 ggtatcatag ctgccaatgc ggtaataaac ccagtcaatg taggggctgg aaacccaacc
    14281 aaggcatagc aaatgcccat taatatacct acccctatgc caacaacaat agttccattc
    14341 acagtacctc gcaacgcgct gggaagcctg tcggaataac ggaaccatct gtcacccaaa
    14401 caatattctc ctatatgctg aatttgtaat agtaatttat ccccatcacg atagaagaaa
    14461 aaaagtgtta aaagggtaaa tcctacttga aaactacgat gagccaaatt gaccccaatc
    14521 tgcttgatgt aataactggt cggggttaac gttacatgca aattagataa aaactccttg
    14581 atacttcccg gcttaccaat attcacatcc caatattgaa ttaaatcatc cccaaccaat
    14641 ggaatatttt taaaaaactc aggagctgcc ccaccttcct tattaatatg ctgcaaaaaa
    14701 ttaataaata attgagactc tttgataagg atacctataa gccaactcaa gggaataagg
    14761 aaaagcaagc ccatcagtgt tgtaaataag aacgctgatg tgttgtgttt gttaccaaat
    14821 aatttacgcc atctggtgta taagggatag gtagctataa caataatagc ggcccatatc
    14881 atggaaggaa tgaatttatg aacaatgtaa agcgagaaga taacgatact gactgttaac
    14941 cctatgctaa ttagctcttt atgattttca ttcattaagc aaagctccaa accaggattt
    15001 gcataataca ccaggcagga actgctgcta aaacgtcgtc cagcataatt cctaacccac
    15061 cgtgaactct ttgatcgatc atacgtattg gttggggttt ccagatatca aaaatacgga
    15121 acaaaataaa gccaattaac atccatgata ttcctttggg agctaaaaac atagttaata
    15181 aataaccaac cacttcatcc catacaattc ctttgtaatc atgtacccca agatcttctg
    15241 tcactctgtc actgacccaa actcccagcg caaatgccag ggcagtccat aataaataaa
    15301 tgctccaatg agcattgatc attaataaat agaggggaat agcagctaat gtaccccacg
    15361 tgcctggagc aattgacatc aatccactgc caaaaccaaa agcgataaaa taaacgggat
    15421 cttgccatac tcgatttgcc aaattgactt ggttcatatt tgctcctcaa cctaaatatc
    15481 gctatcacat cactttagaa tcgaattttg tctttaattt ttattatcat actatagagg
    15541 cgggatttaa aaatgtgaat agcctctggg ttgcaattct ttacttggac tatcagctga
    15601 ttgtattctt aatcctggtt tctcctctat cacaccgatg ggaaaacaga tcagattttc
    15661 tttttgaaga tcccgattaa aagaatccag ctgttgtgtt gaaactgtaa aacataactc
    15721 gtaatcatca cctcctgaaa gagccaagtc aagggcttgt tcaggacaat attgattcaa
    15781 taaaggatgc ctgggtattg cttcttcaaa caagttggcc ccaacaccac ttgcgacgca
    15841 aatatgattt aaatcagcgc ctaacccatc agagatatca atcgctgaag tagcatattt
    15901 tctaagcaaa tggcataaat ccacccgtgg tttaggatgt aatagtttat tcattaattc
    15961 tattttatct tttgcattca cttttttatg cccatccagc aattttacag ccagacccgc
    16021 agcccccaat tcaccggaaa ctataatcgc gtcacccgct tgtgcgccac aacgtctgat
    16081 tgcttgtccc tgaggtgtga gccccatgat ggtcaaagtg attgataacg ggcctttggt
    16141 cgtgtcacca ccgatcagat ccacattata taagccaaga gagtctttta tccctctcgc
    16201 gaaggaatca agccaactct gattcaattc gggcaaggtc aatgcaagag tcacccaaca
    16261 tggctgtgag cccatggcag ccatgtcact aatattgacc attactgcct tgcaggcaat
    16321 atcataggga tcccattgcg gtagaaaatg aatgcctgaa accaaagtat ccgtgctgac
    16381 tagcaaatgc attccatcgg gaacctgcaa gcaagcagca tcatccccta tcccaaaaag
    16441 gacatcattt ctcttgcatg ggatggattt aaaataatga tcaatcaggg taaattcatt
    16501 cattatcaag actgacttca acagagcgaa cctgttttgc caaattattc aataccccat
    16561 taacgtaacg atatccctct tgtgaaccaa actctttagt caaggatact gattcgtcaa
    16621 gaatgacctt ataaggtatc tcagggcaat gaaacaattc aaaagatcca attctcaata
    16681 cagtaagctc tattggattc aatgcattga tttctctgtc taaatatggc agtaaacttg
    16741 cttccaaagc ttccacatga gttggaatgc cgtataacag gcggcagaaa tattctccat
    16801 ctactttatc catattatta attgttctga attgagcttc aatttcatga agatctgtac
    16861 cagacattag ccattgataa agggcttgca atgcaaattt tcgagctcgt cttttaccac
    16921 gaattgattg tttttccaca attacctcat attattctaa taacaacaag aaaagtgagc
    16981 ccttcacatt ttttatctaa gacttttcct tatcttcatt tttcatttga tcaattgttt
    17041 gtctaaaatc actcacatct ttaaagcgtt tatacactga tgcaaaacgc acataggcta
    17101 catgatcaag cctgaataat tccttcatta ccaactcgcc aaccacctgg gaatcgatct
    17161 cgcgttcacc tcttcttcga atttcctcag tgatagaaat aatagctttt tccaaatcat
    17221 caacgctgac aggtcttttc tccaaggctc tcaacatgcc agaacgtaaa ttatcaatat
    17281 gaaacggttc tcttcttcca tcacgtttta taatcaatgg cataatcaat tcagcggttt
    17341 caaaagtagt aaaccgctca tgacattcca gacattcacg ccttctgcga acttgagcac
    17401 catccgcgac cagacgtgaa tccactacct ttgtttcttc cgcatgacaa aatggacaat
    17461 acatgattag gcataaaccg gaaattcacg acagagtagc aacacctggg ttttcactct
    17521 tgaaatatta gtttcatcat gaacattatc aaggacatcc gctacccagt tagataacaa
    17581 agtaatctct ctttctttaa agcctcttgt ggttgcagca ggcgtaccca aacgtaaacc
    17641 actcgttaca aaaggcgagc gaggatcatt gggaaccgaa tttttattga ctgttatgtt
    17701 agctctgcct aaagcagcgt cagcttcttt acctgtaatt cctttattta tcaaatccac
    17761 tagcaaaaga tgattatcag ttccgccaga aacaatatca tagcctctgc tttgtaacac
    17821 actgcacatc gttctggcat tagctaaaac ctgttgctga taagttttaa attcgggtaa
    17881 cagagcttct gcaaaagcaa ctgccttggc tgcaattaca tgcattaagg gcccaccttg
    17941 cataccagga aatacagaag aatttaattt tttctcaatt tcttcgtttt ccttacaaag
    18001 gattaaacca ccgcgaggtc ctcttaaagt tttatgagtt gtcgttgtca caacatccgc
    18061 ataaggaaca ggagaaggat ataaccctac agccaccaga ccagctacat gagcgatgtc
    18121 cgccattaaa taagcgccga ccttatcggc aatttctcta aatcgagccc aatccaggat
    18181 cctggaataa gctgaaaaac cggcaatgat caattttggt ttgtgttgaa gcgcaagttt
    18241 ttccagagca tcataatcaa tcaaacccgt attgctatca acaccatact cgacagaatg
    18301 gtataattta cctgaaaaat taacctttga cccatgagtc aagtgcccac catgaggtaa
    18361 agccatgccc ataaaagtat cgcctgggga caataatgcc atcatgactg ctgcgttcgc
    18421 ttgtgatccc gaatggggtt gcacattgac ataatgagcg ccaaaaagta attttgccct
    18481 tgaaatggct aactcttcag cgacatcaac aaactcacaa cctccgtaat agcgtttgcc
    18541 tggatatcct tcagcgtatt tattcgtcaa cacagaaccc tgagcctcca atactctcgg
    18601 gctgacataa ttttcagatg ctattaattc aatgtgttct tcttggcgtc gtttttcatc
    18661 agaaattgct ttaaaaagaa catcatcaaa attttttata gtataacttt cgtcaaacat
    18721 gaatgttcct tggttggaag gttatattta ccttgttttt ataataaggt cattacgaac
    18781 actctttaca ccatctacgc cagccgcaat aatcccagct ctttgtttta ttttttgaga
    18841 atcgacaaaa ccgctcaact gcacttgatc tttatatgtt tttactttta cggcaaatcc
    18901 cgtagtcccc aattggtcaa ccaaactggc tttcaccttg gcagtagtcg ttgaactatc
    18961 aagatattcc cctgtacttt ccgacagagg agaagcggca cacgcaataa ttatcatgga
    19021 tatggatccc actaataaca tcttaagtga gtcgcgcata gaggctcctt aaagataaaa
    19081 acgttattag agtatcataa aaattacccg gatacgaaga ggataatagt acaattttag
    19141 ttcttttaaa aaaaaagttt cctgtattca gcaagttaaa ttattaacta tggccatgaa
    19201 tttttttctg ttcctcagga ttggaagtat catgtccatg tacattagaa gaatcaggat
    19261 ggctgtgcac attaccatta tcatgagcat gtccatgcac ctgaccgtta tttgcattgt
    19321 gtccgtgaac atttttctga acttcaactc tggcttgtga tggtggcgga gtaactaccg
    19381 cagcatggcc ttgagttttc gcatgctcat aatgaacctg cccccttggc gcactgtagt
    19441 atcgattatt actatgatat cgctgattgt aatgacgatg ataatgccct tgaggataag
    19501 agggagtaac ctctacgcga ggagcaggcc ccaaatactc tggctgataa aagtcttctt
    19561 gtataactgt gcaggaagaa agtaaaggaa acaatactac gcagggaatg aggtatttca
    19621 tgtacaactc ctcaaaggaa aggaaaactc tcgaatcatt gagagctttc ccgaattttc
    19681 aatgaattat ctggttgata actcagcctt agcttctttc aagtaaggaa ctacacggat
    19741 ggtactgttc acatttgtcc aaccggaata aatagtatag taaggtgatg taatagtaat
    19801 gtacatacca ctatggcaat agaaattata gaataggctt atgtagtgag gtgactcata
    19861 acgatagata ttaaaatcta tagttgtgcc atcatcaaac gtaccgaata cacgaacatc
    19921 tgtgaagctt tggttaatga tttcaatttg gcagtaacca ggataagtta cgctcttttg
    19981 tattgatttc ttgtctgcat tatcagcctt gggatgtaag tgaagatttg cagcaaaaac
    20041 gttagaaaat aaactgaaac atacaacaaa taacaatgat tttaacttca tgagcttccc
    20101 cttagtaaga tggaagctgc atagtatcaa agtattcaat ttagtcaata ggattttttt
    20161 gtacccataa aatcaaagtt cattacaatt caattttgtt agagaagaag cagaaacaac
    20221 tatgaaaata ttaaaaataa caagtcatct caaacaataa gatgataaag taaatgttta
    20281 tgttatattt gctaaattaa aatttttttc aagcattaac aggggaagat aatgaataaa
    20341 cgattgacta tcatgggaat aatcttgttg gtagttttcg gtggaatcat agcttttaat
    20401 ctaattaagg cttacatgat taaacaattc ttcgccagtt atgcgcctcc tgctgttacc
    20461 gtttcttctg ctgttgctca agcagtggat tggaagccaa ccattgacgc tgtaggtaat
    20521 ttcgttgcaa tcaacggagt tgatgtcaac tcggaagcat ctggcaatgt agttcaaatt
    20581 cattttgaat cagggcaata cgtagaaaaa gatgagccct tgatcaccat cgacgacagc
    20641 atcgatcaag ccttgctcaa atttaaccag tcggaattaa cgcttaaaga actcagctat
    20701 aaacggcaaa ctgatctctt caagcgtggc gccacgccaa gctccagtgt tgatgaagcc
    20761 aaagctaact tgcaacaggc tcaggcgaaa gtagagcaga ttcaagcgca aattaaacaa
    20821 aaacacatag gagccccttt ttccggccgc cttggcatcc gccaggtaaa cctgggccaa
    20881 tacgtcactc caggacaaac ctccatagtt tctttgcaat cactggatcc cctttacctg
    20941 gaattttact tgccagagca atattacaaa agaattcatc ttaaccagcc tgtgaccttt
    21001 cgcgtagagg aatttcctaa tattctcttt gaaggagtca ttcatgcagt aaactctaaa
    21061 gtagatctaa ctactcataa tgttcaggta caagccctat taccgaactg ccctgctgat
    21121 gcaattcagg atccaaccaa atctcctctt atcaaagtac gtaaacaagt cagaggagat
    21181 aaactgattg tgtcctgcag tacagaatta aacaaacaaa ataaaatacg aaattttgta
    21241 tttatcccag gcatgtttgc ttccattgaa gtggatcaac ctgcagagcc tgatactatt
    21301 atcgtccctt ccacagccat ttcttacagc ctctatggaa atgctgttta tatcattgaa
    21361 aaaagtaaag aaggtaagaa aaataaagat ggtactgacc agttggttgt aaaccgtgta
    21421 ttcgtcacta ccggggagca acagggaaat tacacagtta tcaagaaagg cattaaagta
    21481 ggtcaattgg tcgtaagtac tggtgacttg aaattacaaa atggtacccc tgttgttatt
    21541 aacaacagtg tcaaactcga tacagacagt gatcccaacc aactgggaca gtagatcgtg
    21601 ttggcaacct ggtatttaaa tcattttata acattggcat gctctaataa tatggcttgt
    21661 tgttctttac taccgactag gatcatggtc agttttttgc aggataactt atgaaattca
    21721 cagatctatt catcaagcgc ccggtactct ccatagtggt cagtatgttg atttttctat
    21781 tcgggataaa ctccatctat aaaatgcaaa ttcgccaata ccctaaaatg gagaatacag
    21841 tcataactat aatgactggt taccctggcg ctgatgctga actcatagcc ggatttatca
    21901 ctactcctct tgaaagtgct gttgccagtg ctgaaggaat agattatatg acttcatcca
    21961 gtcagcaagg ccttagcaca attaccttaa acatcaagtt gaatttcgac cctcaaattg
    22021 cttttactga tgtcatgagt aaagtgcagc aaacgctcaa tcagttacct aaagagtcac
    22081 aacaaccggt gatattgaaa aaatcagact catcaaccgc attgatgtac attagtctgg
    22141 acagtaagga tatgactcct cagcaaatta ctgactacgc tacccgagtc gttcaacccc
    22201 agttgcaaac agtggatgga gtagccaagg ctgatatttt aggtggtcaa acttattcca
    22261 tgcgaatatt catggatcca attaaaatgg ctgcgcttaa cgtcactcct gctgatgtgt
    22321 cctctgtttt agccagtaac aatttcttga ctgcggctgg aagtactaaa agtgaatacg
    22381 tagccatcaa tgtcacggct aaaactgatt tgaacaatgt cggcgaattt gaaagactga
    22441 ttgtaaaaag cgataagggg tcaataatca ggctcaggga tatcgctaaa gtggaactgg
    22501 gttcacaaaa ttatgatagc tcagtgactt tcaacagtaa aaaggccgtc tttatatcga
    22561 tcactccaac accaacggct aaccctctca cagtaatcaa tgatgctaga aaattgtttc
    22621 cttcgatagt cagagaattc ccgccgtcat taactggcac aatagtatac gatgcaacag
    22681 cattcattcg ggcatctatc catgaggtaa tggaaactat cattgaagcc gcagtcatcg
    22741 tgatcatcgt tatcttttta tttttaggct ctgttcgttc agttcttatt cccgttgtca
    22801 ccattccgct gtcattggtt ggtgtctgta ctttgatgct catactcggt tacagcatca
    22861 acttgcttac ccttcttgcc tttgtgttag caataggatt ggtagtggat gatgctattg
    22921 tagtggtaga aaacgtacat cgccatttgg aagaaggaaa aactcccttt gaatccgcaa
    22981 ttataggcgc cagagaaatt gctaccccgg ttattgcgat gacaatcacc ctggcagctg
    23041 tttatgcacc aatagggttt atgagtggac tgactggcgc tttgttcaag gaatttgctt
    23101 ttacgctggc aagtgcggtt attatttcag gggttattgc cttaacgctg tcccccatga
    23161 tgtgttcaaa aattctatcc gaagaagcca ctagtggaaa atttgctatt tttctggatg
    23221 agttttttaa caaactgaaa cgcgtttacc agaatgcact tcatagcata ttggatactc
    23281 gagaaataat gttgctatta gccggggtcg tgattttaat gttgccctat ttgtattcga
    23341 acacagccgc tgaaaccgcc ccggatgaag atcaaggctt cttttttgta ctggctactg
    23401 caccacaata cgctacccta aactatatcg aagcctttac aaaacctttt gatgccattt
    23461 ataaaagttt tcctgaaacc gaaaactatt ttactgtaaa cacgagccaa cctatttcag
    23521 gaatggtttt gaaaccatgg gatcaaagga aaaaaagtca gtttgctcta aaacaacctt
    23581 tacaaaacaa gttatctaaa attgcaggac ttaatgcttt agccattgtt ccacctcccc
    23641 tgcctggcgg tggtggtgga cctgccgttc agtttgtggt taagacaacg aatgatttcc
    23701 agagtttaat ggatgtgtcg aaccagctaa ctgaaaaagc ccggaacagt gggctattta
    23761 tttacataga caattctctt aaatttaacc aaccacaagt ggaatttagc atcaatcgag
    23821 caaaagcttc tgaaatgggc ttggatatga gagcgcttgg aagcaccctg acaagtgctc
    23881 tatctaacaa ctacatcaat tattttaatc tggaaggccg aagctaccag gtcatcccac
    23941 aactggctcg caaattccgt cttactattg aacagatagg ccaaatttat gtaaaaacac
    24001 ttaacggaac gatggttcca ttatctactg tgataacccc aaccgaaaaa acgcaaccta
    24061 atgcagcgac tcatttccaa caactcaatt cagcaacaat tcaggcggtc atgatgccag
    24121 gcaagacatt gggtcaagga ttggagtttt tacaaaaagc agcccaggaa gtcttgccca
    24181 aaggatttac atatgattat ggaggacagt ccaggcaatt tatgcaagaa ggaagtgcgc
    24241 tgatatttgc attccttttt gctattattg ttatcttttt agtgctggca gcgcagtatg
    24301 aaagttttag ggatccatta atcgttctca tcagcgtgcc aatgtctatc tgtggtgcgc
    24361 ttatcccgct caacttggga gcagccacaa ttaatatcta cactcaagtg ggtttgatta
    24421 ctttgattgg actcatcagt aaacatggaa tattgatagt agatttcgct aatcatttgc
    24481 aacgtgaaaa aaatcttgat aaacgtgctg ccgttgagga agctgctgga attagattac
    24541 gccccatatt aatgactaca gctgccatgg tgtttggagt aatacctctt cttattgcca
    24601 gtggtgctgg agcagcgagt cgattcgaca tagggctcgt tatctccaca gggttattaa
    24661 taggtacctg tttcacactg ttcgtagtac ctactttata tacctactta gctgaagatc
    24721 atcgacataa gccaaacgaa ccagcagaga tccagtaatt cgactttgga ttttttcgta
    24781 agccttatta atctttaaat aattcgtcta acagcctgca tgtttcctct tctccgaagc
    24841 atgcagccgc actttgtgga taccagcgac aagcaacggt cattagagaa tcggccattt
    24901 aaaactcaaa ggactataat gattttttcc tgagttcctg tttttttaaa atggctaaat
    24961 tcccatactc tatgataaaa ttgtgagttt ttaccagtat aggctatacg ataatggaca
    25021 aaacttactc tccggaagca atagaaaaag ccctttataa aaaatgggaa agtcatcatt
    25081 actttcaacc acgcggtgag ggtaaacgat tttgtattat gcttccgcct cctaatgtaa
    25141 caggaagcct ccatatggga catggttttc aacacaccat aatggatgca ttaaccagat
    25201 atcatcgcat gcttggtgac aaaacattat ggcaaccagg taccgatcat gccggcatct
    25261 caactcaact tgttgtagaa cgtcaactgg aagcccaagg catatcgaga aaagatctca
    25321 cccgtgaaca atttctggat aaagtgtggc aatggaaaga agagtccggt aataccatca
    25381 cgcaacaaat gaggcgttta ggtgcttccg tagattggag tcgagaacgt ttcaccatgg
    25441 atgaaggatt gtctgctgct gtacaaaagg tatttgtaca gctttatgaa gaaggactta
    25501 tttaccgagg aacccgcctg gtgaattggg accccaaact gggcactgct gtttcagatc
    25561 ttgaagttct ctctgaagaa gaagatggct ttctttggca cattcgctat cctgttgttg
    25621 attccgaaga atttctaata gttgccacta cacgccccga aaccttactc ggtgattgtg
    25681 ccgttgccgt tcaccccgat gactcacgtt tcaggcacct tattggaaag caggttcatc
    25741 tgcccttatg tgatagaaca atacccgtga ttgcggacga ttacgttgac aaggaatttg
    25801 gcagtgggtg tgtaaaaatt acccccgcac atgattttaa cgatcatgaa gtaggcaaac
    25861 gtcatcaatt accacaaatc aatattttaa caaagaaagg gactatcaat aaaaacgctc
    25921 ccttaaaata tcaggggatg gatagatttg ttgcccgaga acaaatcatt aaagatttgg
    25981 aacaggaagg cttgctggcg aaaacagaac ctcacaaatt aaaagtaccc cgaggtgaaa
    26041 aatcgaatgt catcatcgaa cctttattaa ctgatcaatg gtatgttaaa accaaaccat
    26101 tggcagaacc tgctatcgcc gctgtaaaga aaggagacat ccgttttatt cccgagacat
    26161 gggataaaac ctatttccag tggatggata atattgagga ctggtgtatc agccgccaac
    26221 tatggtgggg acatagaatt cctgcgtggt atgataatca tggtaatatt tatgtaggtt
    26281 atagtgaaaa cgatgttcgc tttaaacata aaattgatca atctactccc ctgaaacaag
    26341 atgaagatgt tctggatacc tggttttcat cagctctctg gcccttttca acattaggct
    26401 ggcctgagcg tactcccgaa ttggaacaat tttaccctac ttctgtactg gtaaccggat
    26461 ttgatatcat atttttctgg gttgcccgta tgatcatgat gggactaaag ttcactggga
    26521 aaattccctt taaagaagtc tttataactg gtttaattcg tgacagtgaa gggcacaaga
    26581 tgtccaaatc caaaggaaat gtactggatc cattggacat tgtagacgga attgatctgg
    26641 attctttaat agccaaacga acgtctaacc tgatgttaaa ttctgttcgt gacagaatca
    26701 caaaagccac tcgtaaggaa tttcctgagg gaatcagcgc ttatggaaca gacgcgctgc
    26761 gattcactta ctgttctctt gcttcaacag ggcgtaatgt gcgttttgat ttaggacgag
    26821 ttgaaggata tagaaatttt tgcaataaac tatggaacgc agctcgctat gtcttattaa
    26881 atacagacga agagcaaatt gattttgggg atggcgcatt tcaatacagc ccagctgatc
    26941 aatggatact atcccggcta caaaataccg taagtaaggt acatcactat tttgaaacct
    27001 atcggtttga tctcctcgct aatacgctat atgaatttgt ctggcatgaa tattgtgact
    27061 ggtatttaga attatccaag cccatattac aggatgaaca ggctttaagc gccatgaaaa
    27121 gaggcacgcg aagaacttta attcatgttc tggatcaaat attgaagctt cttcatcctc
    27181 tgatgccatt tattacagaa gagatttggc aaaaaaccac caaatttacc agtgaaaatg
    27241 ggattagtat catgctgagc acatatccca aagtcaatga ggaattcata aaccccgcta
    27301 tagaggaaga attggattgg ttaaagtcag ccattcaatc actacgaacc atacgcagtg
    27361 aaatgtctat ctcacccgcc aagttaatac ctttatacat acgcaatatt actcctgaat
    27421 taaaggagcg tatcgcaaaa tatgaaaaaa ttctcaagac gctaagcaag atagacaaaa
    27481 ttaattatct tgctcctgat gagaaagttc ctgtttcagc tactgcggta ttgggtgaaa
    27541 ttgagttgtt gattccaatg gcagatttga ttgataagga ggcagagtta tcaagactga
    27601 ataaagagct tgccaaattg aataaagaca tcgagctagc tcagggtaaa ttaaataacc
    27661 ctaaattcac tgataaagcg cctgaagaaa tcattgctaa agaaaaagac aaattagctc
    27721 aggctcaact ggctaaagat aaacttttgc aacataaaaa caggattgag tcattataac
    27781 tcaatgatcc ttagttaaac cctccttaca gtcatggctc aacttaactc attattctat
    27841 acgtgactgt aaggaacaaa tggcacaaac cggattattt aaaagaaagg atgtcttctc
    27901 gtggtaactc aattcaatac gcttaaatcc tatattttcc ccatcatttt gctattatct
    27961 attttacttg gtgggttaac aggatatgtt tttaatcaaa acgttgcctg gttaaaaccc
    28021 tttggcgata tttttcttaa tttgattttt actaccatcg ttcccctaat ttttttcagt
    28081 gtatcctcag cgattgcaag aactggttct attggcaaat taggcaaaat attctactca
    28141 atgacagtca tattcttatt tacaggaata gttgctgcag tttatgctct ttttgtagtt
    28201 ttacttttcc ctccagcgca aaacatgcct gttctcttgg aaagttcaaa gcaactctct
    28261 ccgacaaatc tcccggatcg cttgatagag atttttactg tacctgagtt ttcaaaatta
    28321 ttctctcatg agcatattct ggcattagtt cttttttcaa ttctggtagg attggctgta
    28381 gcccattcca aagataaagg tacaattttt aattccttct taaaagcagg agaagacgta
    28441 ttcatgtcag tatttcgcct gattatgtat tatgctccta tcggtttttt tgcttatttt
    28501 gcagtaatag taagcgaaat tggccccaaa ttaatggaaa attatttacg cattgccata
    28561 ctctactata ccgcttcagt gttctacttt ttcttcgcct taactgccta tgcttatttg
    28621 gcgggaaaat cccagggtgt ccggctattc tggggaaata ttttccttcc tgcagcgacc
    28681 tccatagcaa cttgtagtag tgccgccagt attcctgcca acttaatggc aaccaaatcc
    28741 atgcgcatcc ctgctgaaat ctatgaaaca tcaataccct taggctccat aattcataaa
    28801 gatggatcag tcatgggcgg tgtttttaaa attgcctttt tattcgggat ctttcattta
    28861 ccttttacca gcttgcccgt tcttatgatg gcattggggg tttctttgtt ggtaggaaca
    28921 gtaatgggag cgattcctag tggcgggatg ttaggagaat tgttaatttt gtcagtgtat
    28981 ggttttccac cttctgtttt aattgcagtt gctgctatta gcatcatcat tgatcccata
    29041 gcgacaatgg tcaacgtaac aagcaatagt gtttgcagca tgatgattgc acgtctggtc
    29101 gaaggtaaaa attggtttct cagatcctcc gatgaaaata acctataatc taaggtatgt
    29161 ttaatataaa aagcacatat taaattttca ttatcccata tgtgcaatat aaaggcattt
    29221 tttggaggga atagtaatga aaaaaatact gtatgttatt ccgggtattt tattaattac
    29281 gaactctttt gcccttgata tacctgggaa tattaccaat tctaacaaag atctgctccc
    29341 ttcacctttt cctgtttacg tcattgaggg gtctgctgtt gtcaatcatc cttacccggg
    29401 agcaaaaaaa gtactcctgc caaccgacaa cggctatgta gattatccag gatgctatat
    29461 tgcttgttat tcgcataata caggtgtcta cgccatttcc ccaacaattt cagtcatggg
    29521 acaaattcga gtcaaagggc aatatgacgc ccgaatttgc caacctgatg gatataaaaa
    29581 tcaagacatc agtgctgctt atcaatttaa acagctttgt gctgaaaaga tccccgcctg
    29641 ccaaaataac agttgctggg ccggtggcga tactggcgga tggtttggaa ttcaataagc
    29701 agaccaatga atttcacaga ataaaatgag ataggatact tgattttggg tcaaagccac
    29761 gcctttaaaa tttttagcaa gcatcatcac tctcaacttc agcagagaga taattcagca
    29821 gtttgaatag tgggggatac ggagatattt ggtgaatacc tcatattaat taaattagta
    29881 attaaccagt gaaccaataa catacttaca caggctatta tagttaaagg gattggagtt
    29941 gtgatcaaca gaaaaaaacc aataggtaaa aaaacgctat taagaattat tttatttaaa
    30001 tctttcatac gagcgttcgt cattgccaat tgttcattct tgatttgttc tcgactagtc
    30061 tcattaagct taagttgatg tattaattgc ctatctttct ctatatcgat taaaactcgt
    30121 aaaagtgaac taataagaat gatagaagat attacaggcg aaagtggtac tgccactcct
    30181 gaaaatgaaa ataatccaaa agctatcact acagataagc ttgtgagcaa ggatcgaaga
    30241 ccatttaatt ctttattctg ccattcaatt gctaaacgag agcgctccat acccatagcc
    30301 tgattgtatt ttaagtcata ttcctttttg tcttgttggt aacgaataat catcactaaa
    30361 atatcgatga gttgagccaa cgtttctaat tgcatccctt gaaggcctgc agatattgag
    30421 tttctataag ataaccaaaa aaactgggtc aggttaacaa cgcaccacaa gctatcattt
    30481 aaaagactgt agtaaatatc ccttcgtatt ttatgattag ttttttcttg cgattcgact
    30541 aaaatgagat gcgctaataa accaacgtta gctgaaaatc gaagcatata cagagaaaag
    30601 ctcatcacac ccaaagccgc atctaaggga gcaagatccc ttgtgttttt ttgtgatttt
    30661 gctaaatact ttgctaaacc tttaccacga tttaattgaa gtcttttgtc atttaaatca
    30721 gtcagtttgc tattaaaaaa cattaatgtg gattttatga tcggttttgc tgtgcctgac
    30781 tcgtttttgc tcatattagt atcatcaaac aattatgaat taataataag caataaaatc
    30841 tgtcagaaga gtgacatcaa gattacaaaa ttgtaatcta attcattatg ataattagca
    30901 tttttatgtt aaaatagaac ataatttaaa cacaatggca ttatgcgatt attaattgtt
    30961 gaagaccata aaagaacggc tgattttatc tgtaaaggat ttaatgaata tcaatttcag
    31021 gcagatgctg tatacgatgg tgcagaagca atctatcgaa tctcagaaat taactacgat
    31081 gctgttgttt tagacgttat gttacccata atggatggat gggctgtact tgaaaagatt
    31141 cgtgaactaa aacctgattt acctgtttta atgctttctg cctgcgacga tgtcgatagt
    31201 cgtgtgaaag ggcttgaaat gggtgcctat gattatcttg ttaaaccttt ttccttcaat
    31261 gagctccttg cccgagtaaa atctttacta cgaagaaaac ccaaagagag ccctatctta
    31321 ttaaagatta atgatttaac tctaaactta caaaagcata cagcaatacg aggcgacaaa
    31381 aagttacctt taacagcaaa agaattcatg ttattgacgt ttatgttgaa acgaagtggt
    31441 gaagtgcttt caaggacagt cattgctgaa caagtttggg atattaattt tgacacgaat
    31501 accaatatca ttgatgtagc gatcaagcgt ttaagggaaa aagtggataa tgatcatcct
    31561 actaaattga tccataccgt cagaggagta ggctatgtat tggagattcg ctaactcaat
    31621 gtccattact aaccgcttat tactgatatt tattggttca accgtactga tattgtccat
    31681 tatcactggg ttaatctatc ctccaatgaa agaattactc catcatagtc atttgaataa
    31741 tgagcattat aattatttat taacacggat ttgtattaaa aatttctttg ttggactctg
    31801 gttttctact ttgataatca ttcttgccag ttatttgctc gcaaaaaaaa gcatgagacc
    31861 aattaaaata ttcactaaag agcttgcatc gattaatgcc tcatcactag agaaacgatt
    31921 accttacaca gggaatccca aagaactgga agaattagct ttgacttgta atgatatgct
    31981 ctttagaata gaaagtgcat ttagccatat aaagcaattt tcagccagta tagctcatga
    32041 attacgaaat cccattcatt acctccgaac tgctaccgaa attaccctga ctaaaccaca
    32101 aacgattgaa acctaccaac atgtattaca aacgcatctc gaagaatatc aaagtttaac
    32161 ccaacttata gataatctgc tctttttaac tcgctgtgag cacggccaac ttcaattaaa
    32221 tgttagaaca ttatctgcaa accacttaat cagttcaatt atcgagtatt attattcaat
    32281 agctcaagaa aagggcatag aaattcagat gtttggcgag gctcagattg aagtagatga
    32341 acatttattt aagcgcgtta tttcaaattt aatagacaac agtctgacct ataccaacaa
    32401 agacggaaga atactaatca tcatagaaaa aagaacagac aacagcattc aaatccgtat
    32461 aaaagacaat ggaattggta tatcaaaaga acacttacct cttttatatc acggatttta
    32521 tcgcgtagat tatagcacta acaaagaaaa cgcaggtctt ggtttaggtt tggctatcgc
    32581 taaatcaatc atggaacacc ataaaggcca gcttgcgata gatagcaaga tgggtttagg
    32641 caccactgtt atattaaccc taccaggaaa aagcttttta aagattgaat aatgtatgta
    32701 tttcatctat ccgagacctt aagggaacgg atatacattg aactaagtta ttctaagaac
    32761 atagactttt cccgcctcac acagcaacac caatctacaa taagtagaat tgttagagta
    32821 attatcaatt aactcaaatt ttgcttctgc agacacgatg acttatccac catgctaaaa
    32881 gcaaagtaga aaatactcct aaatacactc catattgttt ccatgatgat cctaccagct
    32941 gcaaagcatc agggctatga aaaatagaaa acggtatagc cagtaacaca tccatgatcg
    33001 ctgatcctgc cactaaacca caggcaataa gagtgccttt ttgctttcta ttggtagatt
    33061 cttcagggtt aactttcaac cgtcctaaac gattttgaac aaatagggca atcattcctc
    33121 caataaataa aggaaccgaa gaggaaagag gtaaatacat tccaatggca atacctaaaa
    33181 tagataaatt aagaaagcgt ttgatattta atatgcgatt gagaaaaata gccaataaaa
    33241 taatacatga accagccaac atcatattcc agggcaatga atttctaaat actgcttccg
    33301 tgatggctgc cattaatgcg gcggtcgggg cgggtaacga ttgtgttaca tccattccag
    33361 catgtggcat tactcctgct atgccataaa cattaaataa aatctgcatg actggaggaa
    33421 taaccaaagc agaaataaca acgccaagca gcaacatcac ctcctgtttc catggagtag
    33481 ccccaactaa ttgacctact tttaagtctt gggtgttgtc gttagcgata gccgctatgc
    33541 ctgtgactac agcacctata ataatagtaa tagcttctgc agcttgaatt tgatgtgaag
    33601 ttaatggaag gggcaataga tgattaattg ctgaaaccaa taaccatgcg gcaaaaagca
    33661 tacccgagat aaccactgaa ctcccgggac ttgcagtgac tcctaccatt cctgaaaaat
    33721 aagctgtaat cactgagaat aaaaaaccga cgactaaaac ataaataaca ccaataaata
    33781 caatagttgg tgaaaaatca ttatccagtc caacctgccc taatggaaaa atgatttgaa
    33841 agaacaaaaa cagtattcct gccatcagtc caattcccat caatataaat ggcatgggaa
    33901 tatctttttc tgtgcgagga tattgttctc tgaacttgct cttggaaata taagttctga
    33961 atgatgtctt gacacttctg gtgagtggtt tcgctaattt tataaaagtc caaataccgg
    34021 caaacagcat ggctcctatc cccaaatagc gcatttcact attccataac aaagtagctg
    34081 cttgttcggc gggatattga tttaaaaaat caggataaaa ctggctggct attggcaaag
    34141 cgatcaacca tgaaatgacc gccccgagaa aaatgcttat tgccatatcg tgaccaacga
    34201 ggtagcccgc acctatcatg gttgcagaga agccagcacc caaaccaaat agagaacgtt
    34261 ttacaacaaa ccaataattc cagctgctgg cgattacttt gaaaccaatt tgcagtaact
    34321 cgagaagtcc gcctacaagc ccgccgagaa aaatgtcttt aataccaacc ttgtctgccg
    34381 aagatttcaa gacctctgca atcgctcttc cttcaggaaa tttgagggtt tggtcattaa
    34441 caagaattcg acgcaaagga atagaaaaca aaactcccag gattcctcca caaacagcaa
    34501 taaaaaaatt agtgacgtaa tcaaagtggt tccaaaaccc gatgataatg agcgcaggaa
    34561 tagtgtaaac gatacctcct gcaacagcct caccagcaga tgctgctgtt tgtacggcat
    34621 tgttttcaag aatggttgaa tttttaaaga atcgcaaaat ccccatggaa ataatagcgg
    34681 cgggaattga agcggaagtt aatataccga gtttaagcgc cagataagca ttagacatgg
    34741 ccagtagaac ggtcaaaatt atcgccagaa taatcactct aaaagtgagt tcagctactt
    34801 ttttattcgc tgcaataaat ggagtatcag acatcaatta ccccacactg ctttggaaat
    34861 ttctggtttt accatagcag aaattagtga taatgggata tccactgttt gctctccata
    34921 aacataagct gccacctggt atgtattaaa aacaatagca atcccttttt tggtaaaatg
    34981 ccaaatacta taattttcct gtgtcggttt cgttccttct ttaatccagt tttcatctga
    35041 aatcttcttg gctgtgattt ctttttttgc cagatcagcg attggctgca aataatcgga
    35101 acctggaaca aataaatcag acaattgtac aggctgattc ttgataaagt tgagtacctt
    35161 tactgcattt gagggatgag cagctcctcg atgatatatg gaaatattaa atcgaacact
    35221 tagggcatta gttgattggt aaggaatagc atatgtaata tttaaaccgg ttttacctgg
    35281 agcatctgca ggagtatcag catcttcaga taattcattc ataaaactct tttgctgatt
    35341 agtaataaat tcctttaccg cctgatttac tccgttactt tgaaatccct gagggtattt
    35401 tatatccagc aaatactccg ctgtttcttt tttaataact tctgttgtaa tcgcagaagc
    35461 aagaaacgaa taaaataata gcccaaacat caggccaatt ttattgatta aattcatttg
    35521 tatcggcatt gtttatctcc aatcaagtaa tcctctcagg atacccattc accagccacc
    35581 atcgtttgat gaggtaacgg ataagcgaaa taataacata gtgcagcgct atcttttata
    35641 gaccataaaa ccaaatcagc aatcttgcct gcttcaatgc tcccaatatc cttttccatt
    35701 cctaaagctc tggaagcctg atacgttact gcagataaaa cttcaggtat agacatagag
    35761 aaaaattggc aagccatact catcatcaat aacaaagaag tcgttggaga agaacccggg
    35821 ttagaatccg tggcaatggc cataccaaca ccaacctgac gcaataaatc aacaggtggt
    35881 ttttgttttt ctttaaggaa ataaaaagcg ccaggaagta agacagcaac cgtattggct
    35941 tttaccatat ttaacgcgcc attttcatcc aaaaactcca gatgatcaca ggataacgca
    36001 ccataacgag cagccaaaga actggccccc atattagata attgttcagc atggcatttt
    36061 attggtaaat ttaaatcctt agcagcttga aaaatttgct cagcctgcct tatagaaaaa
    36121 gctatggatt cacaaaaaac atccacggta tctaccaaat ccatattttt agctgcaggc
    36181 aacatttcat tacaaagaaa atcgacataa gcctgactat ttcctttaaa ctcgggacct
    36241 acagcatgcg cccccagaaa agttgttttt accctgactc cagccatttc ccctaactgc
    36301 ctggcaacct tgagcatttt cagctcattt tgtaaatcaa ggccgtagcc tgacttaatt
    36361 tcaacagtag taaccccttc attttttagc gcaagaagtc ttggcaatga ttgatcaatt
    36421 aactcttctt cggaggcatc tcgtgtcatt tgtactgtgg ataatatgcc cccgcctgat
    36481 ttggcgatat cagcgtaact gacgccttgc aattttaatc gaaactctgc ggctctgtgg
    36541 cctgcataaa ccagatgagt atgacaatca attaatcctg gtgtaattaa ttggctgtga
    36601 caatcctttc ttgacttggc actttcctga aaatgggcag gtaactggtc ctcagaacca
    36661 caccactcta ttctgccttt ttttataaca atggcttgat tagaaagttg caaccctgtg
    36721 gcatcgattg tgcttgcatt gagcaataat tcatcacagg caaacattaa aattcccaat
    36781 gaagtacctg gtgaggcggc ttcaaccagg cagagtggtg agtcgtgtca tatatatccc
    36841 actctttgga tacatacgtt tcattatcaa tatctaacag cagccaaata aaaaattctg
    36901 ctactgtttc gggtgatatc aaacgattat gatcttttaa acgcctataa aaattgacct
    36961 gttccggatc aagattaatc ccgtttcggg ctattgcctg catatgagtg tcgataattc
    37021 caggcattac gctggcaaag gccagtgaat cgcactcaat ctgccagcat cgtgttaaca
    37081 tagccaaggc cgctttcgat acacaataag ctccccatcc tttgatagga aaataagcgg
    37141 cagctgaacc tacattcaat actctgccac ctgacaattt atcatacaaa agttgtggaa
    37201 gaaaaagtgc cgcatctata ttggtgttta atgcctggtg ccactcggca aaagaaatat
    37261 cttttaaaag cagtgtaggc tccagagttc ctgcattgtt tatcaaacca tcaatttgag
    37321 gtgtggtact taaactggct ttgattaact ctctgccttg aggagtggag acatcggcac
    37381 ataaataatg aatgtttgca gacaaagaag cggtttcttg cagtaatttt tccctgcgcc
    37441 ccactatgaa cacctgttta ttgcgttttg ccaaagcaaa cgccaaagct cttcctatgc
    37501 cgctaccacc accagtaatg agatacacaa tttcctcatc aatatagaaa acaataggtg
    37561 aaataatacc agacattaga cttcttgcat aacctgcacg ttttatttta gaacaagaaa
    37621 aaagcgactg aacggtctaa gtttattaaa agtaaatgaa aatcttgagt atttagcatt
    37681 tctcttggaa actagcccta tcattagagc tcttgcataa cctgattatt ttgttttagg
    37741 gcaaggcgca aacgttttga ggagcggagt ttacatgcag taaattagca ccacagaaac
    37801 gtttgcaacg cggcaataac actaaagaaa caggttatgc aagaggtcta ttaaaaggag
    37861 aacttgatgt ttgacgattt aagtaactat cggccagcca accctgcgct ttggcaaggc
    37921 aggaaggaca ccaccaacca agaacgtttt tttcaaaaaa ttacttttat tgataatcaa
    37981 aatgaattaa tgactaaaga caaaaaaacc atatttcttg gatttgccag cgatgccgga
    38041 attaaacgca atttaggcag aacaggagca aaattaggcc ctgatcaaat taaaacccaa
    38101 cttgccaaat taccatgcca taataataaa cattatgttg atcttggaaa cgtggtatgt
    38161 gaaaacgatg aattggaatt agcccaatct caatttgctc aaatagttca tttttgccat
    38221 gaaaatggcc atcagatctg tgctttcggc ggtgggcatg aaatagcctg ggcgcactat
    38281 caaggattat cctcactcta tccgaagtta ggggttatca actttgatgc tcattttgat
    38341 ttacgccctt ataaaaaagg tgaatttggc aactcgggaa ctcctttctc tcaaattgcc
    38401 acctattgcg aagaaaaaaa aatgcctttt cattattgtt gtattggtgt gcaaaaattt
    38461 ggcaacaccc catctctttt tgaaaaagca aaaaaattaa atgtgagcta tctctcagca
    38521 gaagaccttt atgagcaaag ccaggcttgg caaattgcat ttcttgatga ttttatcctt
    38581 aatctggacc atatttactt aacgatatgc ctggatgttc tcgccgaatg ctatgcccct
    38641 ggtgtaagcg ccccgcaagc attaggttta tctccctggc aaataatgcc actgttgaaa
    38701 tacctcatac aaagtggcaa agtagtaagt ttagatattg cagaactttc gccgccacta
    38761 gattccgaat taaaaactgc tagactagcg gcacttatta tcgcagaatt gttagatact
    38821 aattgaggag tatatttcat gaagaaaact gtgctgtggg gtgctttatt tactctaatc
    38881 actactcaag cgaactctga agcaactcag caagcgatat caactcaaaa ttcggcgtcc
    38941 accggcacta atgtagtttc tgagtcaacg aatcaggtac ctgccacgaa tcaaaacacg
    39001 cagcaaaatc agctgaacca acctgtacaa tcaaatggac aacaaccaac tcaagccatt
    39061 caaaacaatc aacaaaatca accgagccag acaggggaac aacagtctaa ccaaaacatc
    39121 cagaataatc agcagaatca accagcacag caacaaacca cacagcagcc tgctcaacaa
    39181 caagtacctt cacaacaaac agcgccagtt attaattgtg attacaagat ttccgccgaa
    39241 acaaaagcta tagagcaatc cctggtttta acctggtcag agaaagcaat aattcagtca
    39301 tttgattttg atccggctac ggtagatgcc caattgcaaa aattacaagc ctgctttaca
    39361 gatcaaggat ggctaagctt taattcagca ttgcaaaaat caggtaatct agatgccatt
    39421 aaatcacaaa agttgcatgt tagcagccaa attgatggtc agccacaagt gactgaagcg
    39481 atagaaaatc aatggaaaat tatcatacca ttacaagttg tctatcaaaa tgacaaggag
    39541 aaggtaaccc aactacttaa tgtcaacgta actgttgggc gaaaaattac cggtgattta
    39601 ggcatcaacc aaatgattgc tgtaccccgc acagcaacca atacctcaca aaccaattca
    39661 ccgtctaata caaacccagc agactcaaat acatcgacct ctcaaacacc tggtgacaca
    39721 acaaataatg ctacccaaac caatacacaa acacagactg ggacaccaac caactcacct
    39781 ccgagtggct ctacaacaaa tacccagaat taaattcaac aattagtgcg gcattccatt
    39841 aagaatgctg ccaaaatcac ggaaatatca tgcgattaat atttacagga gtattatgcc
    39901 tgttgactct caatgcccag gcgaatgtga tacagtattt tgcaggaatt agttataaca
    39961 accccgctga tttattcaaa gtaaaaaatg gtatcttgct tgttggagga accggctctt
    40021 atgccgattt gcaatttaag ggaagcgcct taaatttcaa tacgtttcaa tacgattcag
    40081 gggttaatca ctcgcgtact tatattgtat ggccatatgg tcgagttgcc aagcgcctca
    40141 atgacaagac tgtagtagca gtagatctta ccgaaccttt taattccaat cttgattggg
    40201 gcaacgacgc ttttacaaga tatgctgcaa cccaaaatta cctgaccgat gtggatctaa
    40261 gccccaaaat atcctatgcg attagcaaaa aattacaaat tggtggtggt ataaacttta
    40321 atgtactact aaagaatgaa gtcaattggg cttttcctac cggccaatcc acttatgcga
    40381 atttaattaa ccgatcctct agttttggtg tgggctataa tttggggatt aattatgcag
    40441 tgaatgatac caatttcctt ggtatcactt attattcaag aattcgccaa aatacttccg
    40501 gtaccagtta tctgggatta gctgccaacc ctgatttcca attcggtttt tatatgccag
    40561 ccacaacggt tgccagttat gtccatattt ttaatcccaa atggctcatc aacctacagg
    40621 tttttcaaag cgaatggaac gccaatcaaa aagtgagact ttataacaca gcagcaccac
    40681 ctccatttac taattttatt tttgatatgc attttgatgc ctcttatgct tatcttgccg
    40741 caatacgtaa acaagtctct gataaattag gcattgcgct agcaggcatg atcgatgatg
    40801 gtcctgaaga agatggcctt agaaccatcg ttttcccttc tgatacccaa tattttcttg
    40861 gattgattgg tgactaccgt tttacggaac atgcttccat ggaacttatc ttgggacatg
    40921 tgtattctaa tcccagcatt caaaacaaag ccaaggtaaa caatgtaccc gttcccttta
    40981 ctacaggccg ggtgacaatt aatgccaatg ttttggatct taaagtcaaa atcgaggggt
    41041 gatcttccag gtgtaaccac ctggcacttc ctccaagagt tttatttttg aatagtcctc
    41101 tttttaaata gccaataata agtccatgat cctgctatca gcccaatcac aaaatatacc
    41161 ggatcggaat taaaggtagt caaggcagta atagatgggc ctgggcagta tccagccaca
    41221 ccccaaccaa ttccaaaaat gatacttccc aagattaatt ttttctcaat gtttttcttc
    41281 tcgggtaaat aaaattgatt acacaatatt ggtttatcaa atttgtttat cagtttgtac
    41341 cccaaaaaag ttacggtgac agcaacagcc attacaatca gtaaactcgg atcccaaaat
    41401 ccattgatat caagaaaatt taataccttg ttaggattga tcatatttga aatagtcaac
    41461 ccggctccaa ataacaaacc acatagaaat gacatgatgt tatacattaa tataatcctc
    41521 ccacatgtct tatcagatac acagtaatca ttgcagataa gataaaaagc agtgtcgcta
    41581 taaaggagcg cttggaaaat ctggccagtc cacatacccc gtgtcccgaa gtacaacctt
    41641 ggcccattcg ggttccaaaa cccaccaaaa atccaccaat tagtaacagg aaaaccggat
    41701 aatgtgttct taatggaaac tggataacag ggcttatgaa atagatcaat cctgcagctg
    41761 ccaaaccaag taaaaaggca atacgccaga ctgggaatgg tttttcaggt ggaaagagtc
    41821 cgtgtaccat tccactgatg cctgctatac ggccgtttaa ccataaaaaa aggacagcac
    41881 ttaagccaat cagtaatcca ccaatggcac ttagataagg agtaaaagag gttatataat
    41941 ccattattta catttccgtt tcatttacaa tgaataacac ctgaattgag acactttaaa
    42001 aaattaaagt gtctctcaaa ttacattgat gttttaaaac aatagtccaa attttaattc
    42061 actttttcca atgaggacat ggttttcacc ccgttttgat cagggtaggc taatacgatt
    42121 accttcgttc caactcgcaa gaactcttcg ttcaaccatt tggcagcact agggaaaacc
    42181 cttacacatc catgacttga tgggtgctct ggaacttcat aagccgcatg aatagtgaac
    42241 cccctgtaaa aatacatgca atagggcatt ttagccccgc ctttcgtatc gacagggtat
    42301 tcacccgaac gacagtcaat acctcgtttg ttataaatcc tgaatgttcc ggttatcgtc
    42361 ctgcaagatt gatttggatt ttcttcgcaa acatctattc caccagaacc agctcccgtc
    42421 attacacgat gaccttcttc atcgtaggca gcccaggcag acgctttagg atcaaaaaca
    42481 aataatcttt cgcccggtgc tttaatttgc attgggaaat aattacgtcc tcttttatcc
    42541 cttaaataat gaacggtcct atgtacataa cccgcatcgt cagtaattaa tgttgactca
    42601 tcaaactcaa cgcacgaagt taatccaagg cacattaaaa taactgccca ataaattttt
    42661 ttcatttaga ttttatctcc acaatagtaa aacctggtgg ccttaattaa tcgcttaatt
    42721 ttcgatactt aattcgtgat ggtctgttag cttcatcacc cagtcgacgc tttctatccg
    42781 tttcgtattc agtgtaatta ccttcgaaaa aggttatttg tgaatcacct tcaaaagcca
    42841 tcaaatgagt gcaaattcta tctaaaaacc atctatcgtg agaaatcact atagcacaac
    42901 ctggaaaatt aaggatggcc tcttccaaag ctctcaatgt ctcaacatcc aaatcattac
    42961 tgggttcatc gagtagcaaa acattcccgc cacttttcaa taattttgcc aaatgaaccc
    43021 ggttacgctc cccgccagac aattgagaaa ttttcttttg ctgatccgtc cctttaaaat
    43081 taaaacgccc aacataggct cgtgaaggca tttggaaatt acctatctgc ataatgtcat
    43141 ggccatctga aatttcttgc cacaccgaat tgttggggtt tagattgtcc cgcatctgat
    43201 caacataagc caacttcact gtttctccaa tacgaatgac gcccttatct ggttcttcct
    43261 gcccagttaa catttttaaa aaagtagact tacctgcccc attgggacca ataattccta
    43321 aaataccgcc tttgggaagt ttgaaatcaa aattgtcgat taatatccgg tcaccgtaag
    43381 atttgcatat tttttcacct tccagaacca aatcacctaa ccgctcaccg ggcgggatat
    43441 atatttcatt ggtttcatta cgcttttgga attctttaga attcatttct tcaaaacggg
    43501 ccaagcgggc tttattttta gcatgacgtc ctttaggtga ggttctaacc cattccaact
    43561 ctgctttaat agcacgttgc aaagcatcct cttgcttttt ctccatactc aaccgtgctt
    43621 ctttttgttc aagccaggaa ctgtagttcc ccttatacgg gataccttca ccccgatcca
    43681 attctaaaat ccactccgca gcattatcca ggaaataccg gtcatgggta attgcaacaa
    43741 cggtaccaga aaactcttca agataatgtt ctaaccaggc aacactctct gcatccaaat
    43801 ggttggtagg ttcatcaaga agcaacatat caggacttga tagcaacaat cgacaaagag
    43861 caacacgtct gcgttcacca cccgatagtt ttcctattat ggcatcccac tcgggtaatc
    43921 ttaacgcatc agcagccaca tcgagctttc tctccagatc ccaaccgcca caagcttcta
    43981 tctcattttg cagctcacct tgttccatta acaaggcatt catttcatca tcgctcattg
    44041 gttctgcaaa acgcatacta atcgcatcga aacgagacag tttctcttta atttcagcga
    44101 caccttcctc aactacttca cgaacagttt tacttaagtc aagctcaggt tcttgagcaa
    44161 ggtatccaat tttaattcct ggctgaggtc ttgcttcacc ttcatattgt gtatcaacac
    44221 cagccataat ccgcaataga gtagattttc cagaaccatt taatcctaat acgccaattt
    44281 ttgccccggg aaaaaaactt aatgaaatat cctttaaaat aaacctttgg ttctcaacaa
    44341 tcttgctcac tctattcata gtgaatatat actgcgccat aatcgctcca actctctata
    44401 atcagccttt tatcaaacaa tactaccagt tcagtataac tttccctgac tggcccgatg
    44461 ccataatttg aaatgcgtgc tgatattcat ctactgggaa attatgagta ataacaggag
    44521 aaatatttaa accgctctgt aacatagcaa tcatcttata ccaggtttca aacatctctc
    44581 gaccataaat acccttaata accagtcctt taaaaataac ctggttccaa tctatagggg
    44641 tttcttgtgg tgggataccc aataaagcca catgaccacc atgattcatc gctttcatca
    44701 tgtcgtttaa tgccataggg ttcccggaca tttccagacc aacatcaaaa ccctcgagca
    44761 ttcctagctc attagccaca tcacttaatt tttggtattt gacattaacc gctcggctga
    44821 cacccatttg cctggccagt tccaatcgat gatcgttaac atcggtgata acaacatgtc
    44881 gtgcaccaat atgtcttacg atggctgcgg ccattattcc tatgggacct gcaccagtaa
    44941 tcaaaacgtc ttcgcctact acatcaaatg ccaatgcaca atgagcagca tttccaaaag
    45001 gatcgagaat agccgcttgc tcttctgtaa tgttgtcagg aagagcaatg acattggtag
    45061 caggaagcgc cagatactca gcaaagcatc ctggtcgatt cacccccact cccagggtat
    45121 tacgacataa atgacgcttg ccggcgcgac aatttctgca aaaaccacag gtaatatgac
    45181 cctcaccaga aactctctgt ccaactttca aaccttgtac ttcttttcca acctctacta
    45241 tttcaccata aaattcatgc cctaccgtca taggaacagg aattgtggct tgcgcccatt
    45301 catcccagga ataaatatgg atgtctgtac cacaaattgc agtcctttta atttttatta
    45361 aaacatcgtt tactccatat tcaggaacag gaacatcctg catccaaatt ccaggctctt
    45421 tttttgcttt aaccaatgat ttcatgtcat acctcaaatt aattaggtaa taccaccatt
    45481 tcgcaattca tcctaaaaaa atatcaggtt gtgaaatgta gagtaattta gtttcagatt
    45541 acagagaatt ccttaccaac cgtttcaaac gccttcaggg ctttatccaa atgatgcaat
    45601 tcaagggctg cagacatttg ggtacgaatg cgggccaaac ctttgggtac cactggatag
    45661 gaaaacccta caacatagac acccagctcc agcaaccgat tagcgattcg cccggccaaa
    45721 ctggcatctc ctaacatgac aggaataata ggatgttcgc ccgggattaa ctcaaaacct
    45781 aactgagtca ttccttcacg gaaatagtga ctattacgct ttaatttttc agcaagggag
    45841 ttatttgtgg acaatttatc gagcaccaca caagaagtat gcgcaataac gggggccaat
    45901 gtattggaaa acagataagg cctggatcgt tggcgcaacc aatcaatgac gacttgattt
    45961 gacgcagtat atcctcccga tgcgccccct aaggctttac caagagtacc agttacgata
    46021 tcaattctat cactaactcc aaaatgctct ggtgttcccc tacctgtctt gcccatgaaa
    46081 ccaacagcat gagaatcatc aaccatcacc atggcgtcat acttgtcagc cagttcacaa
    46141 attgcaggca agttagccaa tataccgtcc attgaaaaaa cgccatctgt tgcgatcaaa
    46201 cgaaatctcg cattttttgc tgcaattaac tgttcttcca gggccttcat atcattattg
    46261 gcatatcgat aacgtgcagc cttacacagc ctgactccat caataatact cgcatgattc
    46321 agggcatcac tgataatggc atcttcttcc gtcaataatg tttcaaataa tcccgtattg
    46381 gcatcaaaac aggaagaata caatatagtg tcttctttat ttaaaaaatg gctaattttt
    46441 tgttctagtt gcttatgcgg ggtttgtgtt ccacaaataa aacgaacaga agccatgcca
    46501 tatccgtact tggctaaagc ggcctgtcct tcagctatta actcaggatc attggccaaa
    46561 cccaagtagt tatttgcaca tagattaata acttctcttt cgttaacttt cacgtcagct
    46621 tgctgttggc tggaaataac acgctctgat ttgtacaatc cgtctgcctt gagtgtttca
    46681 agttcatttt gtaaataatt aatgaatcgc tcaagcacta tagtctcctg tatttctgga
    46741 taaattcata aataatacca aattttaaac attctcacca tgagatatta tcaagaaaat
    46801 ttcactttca aacattaatg cttagacata agctgaattc ttgctaaaat tgctccaaag
    46861 ttttaaccta tccaatgatt attaagacgg tagagcaaat gaatcacagc gcacgcataa
    46921 atatgatcaa acaacagtta cgaactggtg atgtattaaa cgaatccatc cttgacttat
    46981 acgatgagat cttaagacat gagtttgttc ctgaaccttt ttctcatttt gcttattcag
    47041 acatgcaaat tcctttggca cacggtcaaa ggatgttaac tccattggaa gaaggtacaa
    47101 ttttacaatc ccttgatctt aaaggccatg aaaccgtgtt ggaagtggga acaggaaccg
    47161 gttttatgac cgctttactc agtaagttat gtaaaaaagt gatcagtatt gactattatt
    47221 ctgaatttac taccaatgca aaacgcaaac ttgaagagca taattgtaat aatgttgaat
    47281 taattaccgg agatgcttgt cgtggatggt tggaaagtgc accatacgat gttatcgtat
    47341 tcactggtgc catggaaaag ctgacagata cccataaact acaaatttta cctggtggca
    47401 agttattcgc aatccttggt aaatcccctg taatgaaagc ttatcttttt cagttggatc
    47461 ataatgcaat ctggacagaa tccatgcttt ttgaaacgga tatacctcct ctggtagatc
    47521 aattgaaacc gaaagaattt gttttctagg gaaagctcga atgagaaaat ctctgttttg
    47581 ttggatttta actttaggtg tttcaaccca tgcgtttgca acagacctaa tggatatcta
    47641 tcaacaagct ctggagaacg ataccatttt taaagaggca tatgatacct atatgtccag
    47701 tactgaagcc attcctcaag ctcgagcagc actttaccct caagtaggcc ttggttcaca
    47761 ggctggccgc aattatcagg atgctgttgc tggagcgttc agtgcgaatc agtactatgg
    47821 aagctatttg tggcaagtca aggcttctca ggcactcttt aactatcagg catgggccca
    47881 ggtagcccag gctaaagcgt ctgttaaagc agcacaagcc agtttcaatg atgcagctca
    47941 gaatttaatt ctaagaacag ccaaagccta ttttgatgtc ctgtttgcca aagacacctt
    48001 agactttgcc gaagcaaaaa aacgggcgaa caaaagacaa tatgatcaag caactcaacg
    48061 ttttcaagtt ggtctggatg ccattacttc tgtatatgaa gcgaaggcag cgtatgatca
    48121 atccatagcg acagttatcg ccgcacgcaa taatcagatt aaccagagtg aaaatttacg
    48181 aaaacttact aatcacgtat acgaaacact cgcgccactc aaagacagta aaattcctct
    48241 tgttaaacca gagccgaatg acgtgaatca atggatagat accgggctta agcaaaacta
    48301 taaattatat gctgcaaagt ataatcttga ggtggcaaaa gagaatgtaa aagcgatctc
    48361 tgccggtaac tggccagtat tttcgctaca gagcaatgcc agtcaggtac ataataacgc
    48421 atctggcaat aatgttttta ttccatcaaa gcaaacccag gctaatattg caatcgcaat
    48481 gaattttcct gtttttcaag gcggcctggt ccaggctcag acccgacaag ctcaatataa
    48541 ctttcagtct acgagtgaaa aactggaaca aacgtatcgt gatgtcattg taaacagtcg
    48601 gattgctttc aataccatca ctgatgggat aagtaaggta aaggcagaca gacaaacagt
    48661 catctccgtg caaaattctt tgcaaagtac tgaagctcaa tttgaagttg gtactcgaac
    48721 catggtagat gtggtcaatg ctcaacaaag attgtttgaa gcacaggaac aattagcccg
    48781 ggatcaatac gatttgatta attccatcct tacgctgaaa taccttgcag ggacattaaa
    48841 cgttaatgat ctcgaacaga ttaactcatg gttagcaact acacgtgtca atggattttc
    48901 acccgtagat aacaaaacct ccaaataaca aatttaggtt ttcttatgtc ttccaatcct
    48961 tcttcagttg aaaaaaaatt actccattat acaggtaaag ccatagctga ttttaatatg
    49021 atccggcgtg gtgacagagt catggtatgt ctgtctggcg gaaaagattc attcacacta
    49081 ttaacaattc ttaaccagct caggatcaaa tcaggaaata aatttgaaat ttttgcgttt
    49141 actctggatc aagcccagcc agggtggaat gatgcctgtt tgcgtcaatg gttggctgaa
    49201 aaatccattc ctcatgaaat actaacccga gacacataca gtatagtgaa ggaaaaaatt
    49261 cctgaaggca aaacctactg ttctttgtgt tctcgcttga gacgtggaat catctacaga
    49321 tatgctgaag aaaacggatt taataaaata gcattaggtc accatcgtga tgatcttatt
    49381 cgtacattga tgatgtcaat tctatacaat ggcgatatac gttccatgcc acccaaacta
    49441 ctgagtgata ataaaaagca catagtcatc cggccactgt gctatgtaca ggaaaaagat
    49501 attattacgt ttgcatcaga acaagccttt ccaattatcc catgcaatct ttgtggctct
    49561 caagaaaatc taatgcgcaa aaaagttgcc tcactcattg atcagcttgc gattgaaaac
    49621 cccaaagtcc ccagtaacat gcttcatgcg ctgcaaagtt tgaagccaag tcaattgatg
    49681 gatcaaaatt tttggaattt taaaaatctg gaagatgggc ttgaaaccgc gcagtcagtt
    49741 caatgtgaag aagtatttaa tgcacagga
//
LOCUS       DACVWI010000003        45650 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.003, whole genome shotgun sequence.
ACCESSION   DACVWI010000003 DACVWI010000000
VERSION     DACVWI010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 45650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45650
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.003"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            56..2134
                     /gene="tkt"
                     /locus_tag="JBH85_00525"
     CDS             56..2134
                     /gene="tkt"
                     /locus_tag="JBH85_00525"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAU0944676.1"
                     /translation="MNGLLADLCLLSDNSASVKCKRVGMNSFTELANAVRMLSIDAVN
                     QAQSGHPGMPLGMADIATVLWKKFLKFNPKNPHWFNRDRFVLSNGHGSMLLYSLLHLT
                     GYNLDISELKNFRQLHSKTPGHPEHGHTPGVETTTGPLGQGLANSVGMALAERVLAST
                     FNHDHFNLVDHYTYTFAGDGCLMEGISHEACSLAGTLGLGKLIVFYDDNGISIDGKVE
                     SWFTDDTTSRFKAYNWQVIGPIDGHDADQIEQAISAARENTTQPSLIICKTVIGLGSS
                     VAGSEKAHGSPLSAQDINNVREFFNWKHAPFEIPDSIYKQWDHREQGEKEEQQWLQLL
                     HEYRQQHPSEHDEFLRRANGDLPDDWQEISAGFLKQCLNNEKAIATRKASQQCIEFFA
                     PILPEMFGGSADLTGSNNTDWSGSKAITAHNFSGNYLYYGVREFAMAAIMNGLAVHGG
                     FIPYGGTFLVFADYARNAIRLSALMKQRVIYVLTHDSIGLGEDGPTHQPIEHIAMLRM
                     TPGMTVWRPADLMETAVAWQQSLEHHNGPSALLLSRQNLPALAHGTDAADLIKKGGYI
                     IADCEGKPDAILIATGSEVQLAITAAEKAKARGLQVRVVSMPCAERFLAQSDDYKNQV
                     LPGQVRTRIAIEAASSAYWHQFVGFDGAVIGLDCFGVSAPATDAFNYLGITVEKIINT
                     LDTLTKQTMV"
     gene            2180..3208
                     /gene="gap"
                     /locus_tag="JBH85_00530"
     CDS             2180..3208
                     /gene="gap"
                     /locus_tag="JBH85_00530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HAU0944677.1"
                     /translation="MSMEVTLTRRSSMTIRVAINGYGRIGRCILRSIFEYNRQNEFEV
                     VAINDLSGIDVTAHLTRYDSTHGPFRSDVSIEGNMLIVDGHGIQVIAERDPAKLPWKQ
                     LDIDIVFECTGFFTSRDAAMGHINAGAKKVLISAPAKGVDTTVVYGVNHSVIKASDVI
                     VSNASCTTNCLAPVVKVLNDAIGIESGLVNTVHAYTKDQMLLDGSHKDLRRARSATQS
                     IIPTKTGAAAAVGLVLPELAGKLDGFAMRVPVLNVSVVDLTFQAKRATSVEEINDIMR
                     KAKNRILQINEDPLVSCDFNHNPASAIFDTTETKVIGNLVKVVAWYDNEWGFSNRMID
                     TAHQMMNC"
     gene            3219..4409
                     /locus_tag="JBH85_00535"
     CDS             3219..4409
                     /locus_tag="JBH85_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HAU0944678.1"
                     /translation="MNLIKMSDIDLSGKRVLIREDLNVPIKDGMITSDQRLQAALPTI
                     KSALDSGAAVIVLSHLGRPEEGKYEKKFSLEPVADYLRENLEYPVRFVKDYLSGVGVN
                     PGELVVCENVRFNPGEKANDEALAKKLASLCDVFVMDAFGTAHRAQASTYGVAQYAPV
                     AVAGPLLIRELEALNQVLKAPKKPIVAIVGGAKVSSKLSLLKQLVGMVDVLIPGGGIA
                     NTFLKAQGFEIGISLYEPDLLDEARHILILAKEKGCQIPLPTDVVVGKTFSETCPAFN
                     KSLSNVAADDMILDIGPETIRDYVDLIHDANTIIWNGPVGVFEFPQFAYGTRAIAIAI
                     AESDAFSIAGGGDTLAAVDLYDLNQQISYISTGGGAFLECLEGKTLPAVAILQERAKH
                     VKTN"
     gene            4393..5817
                     /gene="pyk"
                     /locus_tag="JBH85_00540"
     CDS             4393..5817
                     /gene="pyk"
                     /locus_tag="JBH85_00540"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HAU0944679.1"
                     /translation="MLRRTKIVATLGPASKEPEILRSMLAAGVNVVRINFSHADSSAL
                     QLIALVRKIADELNHPVAVMADLQGPKIRVGRFQNKSITLIDGQNFTLDCMAPDTLGD
                     INGVSVAYPNLANELSIGDHLLINDGLIELEVIEISGSKIHCKVVEGGVLTDLKGLNR
                     KGGGLAARTLTEKDRNDLRTAIEAEVDYISLSFVKDAEDIRQARALMKDYGAQITPII
                     AKIERMEALDHLTDIIREADAIMVARGDLGVEVGAAEVPAIQKHIIEQTRLLDKVVIT
                     ATQMMESMISNPQPTRAEVSDVANAILDGTDAVMLSAETASGLFPVKVITMVNKICLS
                     AEKHASFFYHSDPETCHYQRADQAIAMATMHTANHFPIQAIITLTESGDTALWVSRHH
                     STVPIFAISANKRTIGRLSLVNNVFPIYIDFHQFNPEGLNQQILHELIKSGHLEKRGY
                     VLLTRGTQIGMPGGTNCMEIIPVV"
     gene            5908..11535
                     /gene="sdhB"
                     /locus_tag="JBH85_00545"
     CDS             5908..11535
                     /gene="sdhB"
                     /locus_tag="JBH85_00545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdhB"
                     /protein_id="HAU0944680.1"
                     /translation="MLLLSIEVINMPDHNSSDIPLSQQIDEVRGLLLKALKAQLDDLI
                     AGKLTPQPSGVPFVHFEKDPPQIATLKKVINCLYHAEEAFKSWESIDTSTLLGKAKAA
                     PKLIRALTQIYKSLGLLDEATPEIRSVIADNYHLLEPLFTQAYTIVQESGWLSEFMEM
                     DVTDKASKVIFQGMDLLGPDIDKWHDTHPLVHAFAKISKLVETISKLQEKDMPGKEKE
                     QAVELVRALLDDLDNNPFISKLSISDFEDSKAIKDLLEWFKNIQDDGFDFSKKSIKQY
                     VSWANHYLPTLITFADQLERQNYLKPGSLSTNLCSQIEHLGKQVNGILSEPNFGITER
                     VVSIESLKGKREQQIHNAQANSVRAIMATEKQQAATADFYRILEAYKGMNLSQVTEPD
                     RILLRQLYPQIQTALAHASLDLENLLTSVLNTTGPEKTPAKPKSWWELAKGGLGYVAS
                     YVVNYNVDKILGTRESVDRFLSSQIASEQFKILIAEKAREKLRTGSDKLEETALQYKA
                     EVRVNAIKSTLRKQPLQREAPPSTFVAVKPSKLVNLRGTLTAIQEMQLSTTVNSTRTN
                     VDTLIHRHLPEKYQACFSTLPYQVNEKDPELVKQIKTIENNLFQLEKALKDFEKIDLS
                     YGIMIRLHYFIAIASAASKLKSSVKELSPEGQKALAPLLQQIMTLGSSFSDTNYTTND
                     LSALQQLKTEGQARPGSPLGTSPEKTKTLPEETIKGNDKKPKEKTTELLDYADKISTA
                     RTLLLSKFKSTLSPAIADSLNPQEHGVPFIHLDQDPPQTAAIKKIINSMYHAECALKT
                     WHGIDTSTRLGKIAAAHQGVAALSQVYKSFALFTEDFSDIHNLIRENHDLIAPVIIEA
                     NKLVKEYGWASQFSELDVAQKLGSILGQGINTVQPKTDEITQTASLVKLFSEIPRLLN
                     NISSSLDENAEKSVDELRINSKKIEAIGAVFELFFEENAYLMSMFKGFSAISGLIELN
                     KKIQREGNNLQEITIRQYQKWLKEGYPNLMMMLDEIETRHYLTPGLLSAPIALELDQI
                     NDKLNEIIETKPDFKLQKIPLSFYMGDKRIERLMTKKTEHCLALLQIEEQKKAVNTFF
                     GILKHYSGQPLSNIKPNELAQLRLAFVKIQSAMANSNLELSNDFVAALNQLETSPSEE
                     INKIKVTVSQLIKLQPAVENNLSEQKKSSELKIAVIDKAIEHVIAKSFELKSDVSKEI
                     NIPQLRRTFLETESKKPIVGPGELKPTSVSSLNTVRGNLAYIQELKLSSTVGMIREQF
                     SALTRDNFSTRMQKYLIKPPGKPLHVINDKDPLMVRQIKEVENSLYHLETALKQFEQM
                     KKSDSFVSQTKALVEIANHAHELKMAVERFSPELKEHYGPVVRTALSFSNKVQSINYN
                     KEDWADLQFILNRAHKELLKRKTPRDHRIEKAFFEAGIREVQIDRTESAGKKAAKLGV
                     KYAHLASPQLEKARAYLSSRYKNAFGQQPKAIRSLTREQLANEEFMDAEISRLKKTLE
                     EKYGFNIATIKVLLALLEQIQRAGAQAAEVAGMVNTLVTYDFPKIKENAYRDLLTKLS
                     QEEDYLNLKPGTLINPAMAAVNQLFLSAALELDMPFSKKLSILDDTTYVNILVRQTES
                     DLQTLRKKLSEDPSNHEIAFEIEIKNDKLAFLRQQMVLLEDKNPNQTRNVLLDMQFEV
                     SLRNHLVYTTLKAPIAQEYEQIAREYYKKNKNRFLYADDCSKELLQGLKEFEKKHLPD
                     HLIVFEAYDRLRLFSAKLPPKNQDVKEYIENINRELQNRDIPIEQRAIKVKSLPNDAV
                     FIEKLSSADKGTHFLRKFIQFITIITASITEAIKTGGSLIYIYRQKQMEQSIKNIEKS
                     ISLKEELHTIKNTDGASPRKGEGQEGEIEFTKL"
     gene            complement(11635..12705)
                     /locus_tag="JBH85_00550"
     CDS             complement(11635..12705)
                     /locus_tag="JBH85_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944681.1"
                     /translation="MRIATLFLAVLFISPLWAAPKFFPSQPALNGVYDIKGTELCSTA
                     KHTLAYLNKGKNYDPQVIHDGKVIKISLDRVKKTLEFICQNQKKLNNPDFVKQHFDFI
                     RWYPDLSQAKQLSANKPLLQNIPKDKILMTKYFVHLAGASTKPSSAKPYPLYALPEDE
                     QNLTLDKANAKPGLIRFRYGKQAILSGALKNQPVSELAYLSRDDLEAALLQGTVVADF
                     GPTAGKRIFNVHRSNNIAYDRTKTPYQQERFWYFKEVDGIKGYGKDAEYKITVNPKVT
                     FAADLAEFGLGKLLMIQYQDKSGRTMTKMGILADTGGAFNNNLYQIDYLAGSFAGKDV
                     LYRATRDLPDYVDAYFMILKQP"
     gene            complement(12706..13398)
                     /locus_tag="JBH85_00555"
     CDS             complement(12706..13398)
                     /locus_tag="JBH85_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="activator of prop osmoprotectant transporter"
                     /protein_id="HAU0944682.1"
                     /translation="MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSL
                     RIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVLFTRRLDYLACLKAREVRIDLHG
                     NPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSAVSSVKPMNS
                     FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGL
                     SRKAEEKKETTE"
     gene            13755..13940
                     /locus_tag="JBH85_00560"
     CDS             13755..13940
                     /locus_tag="JBH85_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944683.1"
                     /translation="MRIILSILAIFIPWLVLLIKDNPGGAVVALIMQATLIGWPFASI
                     WAWRAVNPLTPTSQSKQ"
     gene            14120..14851
                     /locus_tag="JBH85_00565"
     CDS             14120..14851
                     /locus_tag="JBH85_00565"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HAU0944684.1"
                     /translation="MRTRIIVNGANGKMGILACETLENHEQFEIVAKLSRQDNLGQSI
                     LDTKAQIVVDLTRADCVYENSLTIINHGARPVIGTSGLVETQIDELTKLCEIKQIGGI
                     IAPNFSLGAILMMILATKASEYFSEVEIIEGHHQQKLDAPSGTALKTAEMIAAARKKP
                     KNKLPLKELTPGARGGSHHDINIHSLRLPGLLARQEVLFGNIGETLSITHNSIDRRCF
                     MPGIVLACQKVLNLNNLVYGLEHLL"
     gene            complement(14955..17423)
                     /locus_tag="JBH85_00570"
     CDS             complement(14955..17423)
                     /locus_tag="JBH85_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAU0944685.1"
                     /translation="MGKGIILRVLENTILSPQVFDTLERLLPGYKVEYFKEQPDYRKS
                     IARRIDSLHDAFSFILKAYPLDPKHTSLTVATLSTYAAECKASCDLEKLTLEELHLEL
                     ERFTAKLVEAIAIAWKWPKGKAVKEAIASLNEAEQYVLMSRGRSDIATIMPIEMGSET
                     KYVLQYDESLSPVYEQWLSELKQLKEYNFPKTPAWFKNLPPYQQAYYCNLNLSSVDPK
                     KALQHFNTFFGNWGDIAKRSLNLTTELNQIHTNSPPYPSWFNELSPAQQAMIRVLSAT
                     PHEIKSSLKEFKKFMVEQARNDQYASTLSLVPKLPQWYWVLSEKQQYFLEYALKNAEK
                     IEDVVSYLSSRHRTLPAPGNYGAHSLYLIDDEGKETLFYDKRYRSSHVASRDSLKFPE
                     DVQQRHVDSNLVKVMEFAKPQQPLLLQTLISPIHAVDYIPTVVTDFLPELPPDLELYK
                     IAREAVTRSKRRHEIFQHNHPFNIAKRYYYTQATDTDSEFLLKAAQKYASSKPGLQAL
                     IDDYKAVLESPLGSATFWDYDGRELFLSSLEELIILNMGGYSYGSCVSGKDRKAVELL
                     HTDAMILYKAKYGNWPKFGIPKEKQERVNFINIVVDLYISRHQHELAGQNAPGSEGIK
                     TPDWYWPNDIAEAINERLGTEKALAYDDRLATDNEVKNISKDLRSFFLPENELHCLLI
                     AKQLGEKMCTMLYDVLSALINEERRFQKSSKDSWKLRWFSDKDVSSTPTGILNIREVM
                     HDENSGNDNVLRIGKIFAAVLNRPESDSSRTTATNSVYDRIRKLLQPLSSETTLQTLA
                     EEAILEWSSLFESSKRENSGLVYV"
     gene            17601..17777
                     /locus_tag="JBH85_00575"
     CDS             17601..17777
                     /locus_tag="JBH85_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin domain-containing protein"
                     /protein_id="HAU0944686.1"
                     /translation="MKSIEDFTGFSESGIDDAIQNALKKAGNPTHFEVVETLGSQDSQ
                     SDRRYQVTLKTLSD"
     gene            17861..19387
                     /locus_tag="JBH85_00580"
     CDS             17861..19387
                     /locus_tag="JBH85_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HAU0944687.1"
                     /translation="MPFNTRSLKMGYNVPHYIGGQLINETDTEAQAIYNPALGEIIGQ
                     VHFASKATCDRAVAIAKAAGNEWSQTPAIKRARVLFRFRELLEKYQMDLARIVTREHG
                     KTLDDAKGSVARGIEVVELHCGLVNELKGDFSAEVASHIDCHTFRQPLGVCAGVSPFN
                     FPVMVPIWMMIPAIACGNTFILKPSEQDPSAPVRLLELLSDAGLPPGVANCIQGNKTT
                     VEHLLAHPDIAAFTAVASTPVAEYIYTTAAAYGKRAHTFGGAKNHCVVMPDADLDQAA
                     NAIVGAAYGSAGERCMALSVVVTVGQHTADALINKISPLIRAIRVDAGDVEGTDMGPL
                     VSQAHRQRVLAAIEKGVNEGARLIIDGRTFQHPQYPQGFYLGPCLFDEVTEEMSVYQN
                     EIFGPVLVIVRVNHFEEALALVNKHQYGNGTAIFTRDGFTAREYSQRVQAGLVGINIP
                     IPVPIANHPFGGWKRSVFGDTNMHGEESIHFYTRRKTVTSKWPITELKDSSFAMPTHD
                     "
     gene            19390..20307
                     /gene="mmsB"
                     /locus_tag="JBH85_00585"
     CDS             19390..20307
                     /gene="mmsB"
                     /locus_tag="JBH85_00585"
                     /EC_number="1.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyisobutyrate dehydrogenase"
                     /protein_id="HAU0944688.1"
                     /translation="MLITEKYMANIGFVGLGHMGFPMAINLLKAGHSVMGYDLQQSAL
                     EHFAEQGGTIAHNLQELAKGKDVIVTMLQTGQQVLHVCLGVDGIFSQLNAGSLYIDCS
                     TIDVKSSRETHQIAKENHLLVVDAPVSGGVAGATAATLTFMVGGEAEAYNAAHPILSA
                     MGKKIIHTGGAGSGQAAKICNNMILGTTMIAISEAFILAKELGLSDGKLFEVVNNSSG
                     QCWAMSKYVPVPGILENVPANNDYKPGFAANMMLKDLLLSQNTAKSVHIETPLGAKTT
                     EIYQQFVDQGLGDIDFSAIIKHIGKIQEV"
     gene            20309..22192
                     /gene="acs"
                     /locus_tag="JBH85_00590"
     CDS             20309..22192
                     /gene="acs"
                     /locus_tag="JBH85_00590"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HAU0944689.1"
                     /translation="MLPVHLKHPHLTATEEYLSEFWSEIAAQTIDWIQPWSITLQGGL
                     HKGDVKWFQGGLLNVSANCLDRHLPHKANQTAIIWEGDDENQNKTLTFAQLYSEVCKM
                     SNVLKSLNVRRGDTVGIYLPMIPEAAIAMLACARIGAIHTVVFAGFSAHALQQRLIAS
                     SCKCLITADAFQRGGKTIPLKKQADEASVDLNITKLVVKNSNAPTALNKNKEHWWHEL
                     KQTVSDQCTPEPMNTEDPLFILYTSGSTGQPKGVVHTTGGYLVQAAYTHQLIFACQDN
                     EVFWCTADVGWITGHSYVVYGPLCNGITTLMFEGIPTWPDAARNWRIIDKHQVNVFYT
                     APTAIRSLMRAGDQWLNSSSRSSLRLLGSVGEPINPEAWNWYHQKVGQGKCPIVDTWW
                     QTETGAIMISPRASDEVIKPGSARKPIPGIVPLLLNEQGHEINGAGEGLLAIKYPWPS
                     MARTIAGDHQRYCNTYLSNGYYITGDGAKRDEDGDYWITGRIDDVLNVSGHRLGTAEI
                     ESALVSHPKVAEAGVVGIPHDLKGQAIFAYVILKQGNKPDAELQTELMERVKDQISAI
                     AKPDVIQFANDLPKTRSGKIMRRILRKIACKEVSHIDELGDLTTLANPQIVEELMKNI
                     LKR"
     gene            complement(22289..25597)
                     /gene="cegC2"
                     /locus_tag="JBH85_00595"
     CDS             complement(22289..25597)
                     /gene="cegC2"
                     /locus_tag="JBH85_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector CegC2"
                     /protein_id="HAU0944690.1"
                     /translation="MTPLFPTQGPITIRQGIGGSCYLLSSLDCILNLGADGEQLIKSL
                     FTQTEDGKVIVRIKRHEALKDNLQKNKMTGKYTHYVDELNNEDVFEISPERLKEIDNQ
                     YGGVKSNSLAIKILERLVSYYYAGDWSNTDPLASVVAHDIPDRIAGFTSTAFLGKFFG
                     IQAEDIPYSKLDDIIKLKLMNPDEPVYISMSYGKVDSFGKFHGRHALRIDKIIPKGSG
                     NYDFVLINPHDNSKTETYKLDDLNKRNCRFCLFNTSIHRASLTKKLLTLSNEEGRYIF
                     SNSGLQKRLISLEEMHLLTDNKIISSCISLHKQIPYLEKLFLKLSVEEKKTLTACIAN
                     ADGSKKEFLKLFLTRIPAMDLLELVLREETSQELLGEVLTELALSNPVEENKLSPKAG
                     INFNGEAFLHLIVKSAIQQKINQLAYLPEKAKQEIESGLINFYFGGASSSLTRASGLR
                     ALFIANIFSKKSIEALFPPKALFAKAIANYLTLKTLPDLLIEYLKSKDTSPIDEEFFD
                     VVLASATFKDPDEFFENLFRLSRINPEVAKALFVFASQKINVLFGISLEEYAKKIALK
                     DSGEFKSWFESLSKPQPVIKIPEIDNVLRQQRVDDAKRVISDIVQRINSFPFSFEGFK
                     TVEHVNLNAEELRGQLKKIVHSGELQNALQILDLPDGHPEVQRALERKLRMIDAAANR
                     RSDFLRKYETDIDEHVRQIKNFPIDFNDADTIVAIESQRILLNKKLHTLVKAEDLLGE
                     QFIANPKIKMVYYAQVEKINLRAELLQKRLLDEAQKVIDSVEKRIDNFVIRFNDISST
                     SAVEWQRNNLLQQLDNLVKPNQALLSSEKVLDCNNLQPSIVRALQAKKQEINETADQL
                     IIKINAEEVVKSYEKQIREFPISFSRCQTVEEVIARKQDLIQSVRYLVDNKPDLLKAR
                     EQLQLSDEYHSDIKIALTDKICEINRQADVMSKRITDQIAAIKETLNILAEIKFSDHL
                     KTIESMVKTLETKAVGDENYKRAAPIARTFYNNLLRAEEHFKNSQLPKNVKCNDFHQA
                     CVRAINAVMPVLEVHRGWKQVFADLASALVTLCTLGGANLYAGRWRLFPVPTESEKIV
                     KDFSLSMQPLSVSA"
     gene            complement(25711..26313)
                     /locus_tag="JBH85_00600"
     CDS             complement(25711..26313)
                     /locus_tag="JBH85_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HAU0944691.1"
                     /translation="MPINLYSKAVFLKSAARVNQLPEDSGYEVAFAGRSNAGKSSALN
                     CLTNNKNLARTSKTPGRTQLINLFSLDEQRRLVDLPGYGYAKVAMEVKLEWQKNLAHY
                     LEARQCLRGLILLMDVRHPLKDLDQILVNWALHRELPVHILLTKADKLSRSEVKNAVL
                     KVRQYYELAEHLVSVQAFSSVKKDGVEELISLLDRWYEWN"
     gene            26388..26990
                     /locus_tag="JBH85_00605"
     CDS             26388..26990
                     /locus_tag="JBH85_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c4"
                     /protein_id="HAU0944692.1"
                     /translation="MKKLALVLILCSSSVIFAQENPQEAGQNKSTVCTACHGPQGIST
                     NPEWPNLAGQHEKYFVKQLKDIKEGKSRSAPTMTAIVANMNEQDMDDLAAYYAKMPVA
                     EGSTPEKYLKRGEQLYRGGDLNKHIAACIACHGPKGSGNAQAGFPLLSGQHAAYTIMQ
                     LQAFKDGKRTNDLNQIMQDISSKMSPEDMEAVAYYIQGLY"
     gene            26962..27615
                     /locus_tag="JBH85_00610"
     CDS             26962..27615
                     /locus_tag="JBH85_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HAU0944693.1"
                     /translation="MLIIFKGYIEELTMFKKLIALLFLMPMTALATQFIEGKDYQTVA
                     SAQLSTNKDKTPLITEFFSYGCPWCYKIDAPLNDWATRMGKGAHLERVPVVFKPNWDL
                     YAKAYYTAKTLAMSDKMNPILFKAIQEDKNPLATKQSMVDFFVAHGVDREIAKSAFEN
                     SPTIDMRVNSGMSLMAHYQINAVPAFVVNNKYKTDLQMAGSEERLFEILNYLVRKSA"
     gene            complement(27692..28990)
                     /locus_tag="JBH85_00615"
     CDS             complement(27692..28990)
                     /locus_tag="JBH85_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/sulfonate/bicarbonate ABC transporter
                     ATP-binding protein"
                     /protein_id="HAU0944694.1"
                     /translation="MPETIINIENLSKSFKKAPSQHLLVLEDVNFKLQEGEIVALLGK
                     SGSGKSTLLRIIAGLIAPSSGTVTYRGKPVTRPVEGIAMVFQSFALMPWLTVLENVEL
                     GLEAQGISREERRHRAIEAIDIIGLDGFESAFPKELSGGMRQRVGFARALVINPDVLL
                     MDEPFSALDVLTAENLKSDLLELWKEKKTNTNGILLVTHNIEEAATLADRIVIFGNDP
                     GYIRAELPVTLPQPRDPESPEYLALVDKIYTLMTTGPKEKAKRAQRERQIGLGYRLPD
                     VEPSELSGLIETMKSFEERIDLPELADELMMNIDDLFPILETLEILGFAKVSAGDIQL
                     SELGKQFSEADLQERKQLFAQRLLEKVPLARYIRRVLDEKAGHRVSEERFLSKLEDYL
                     SEKEADRVLKTMIDWGRYAEIFAYDFNTGILSLENPGKGA"
     gene            complement(28998..30737)
                     /locus_tag="JBH85_00620"
     CDS             complement(28998..30737)
                     /locus_tag="JBH85_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAU0944695.1"
                     /translation="MGNSRFYFANPDKFSRFINRWDLLLLILTFSVLFFLGWAGSQMA
                     TPYQLGDQIPISLEPSNLPFYALRTVLRMFIALIFSILFTFIVGALAAKNRRAEQIVI
                     PAIDILQSIPVLSFLSITVTGFIHLFPNSLLGPECASIFAIFSAQVWNMTFGFYQSLK
                     TVPHDLIEVSAMFRLSAWQRFWKVEVPFSMSGLLWNMMVSMSASWFFVVLSEAISVAH
                     QNIRLPGVGSYIALAIAQRDLHAVGYAILTMVIVIFLYDQILFRPLIAWSEKFKMEQS
                     PDESEYQSWLIDLIRSSRLMKRVTEWLAVFTNSFVNARWLRIGEVKAVKEIDFKRQKR
                     LDRLWTALVLIAVITGGWFLLKFILAELKVSDIFHVFLLGAATGSRVIILILLSSMLW
                     IPVGVWIGLRPRLAQKIQPIIQFVAAFPANLFYPLFVIAIVKFNLSVEIWVTPLMILG
                     TQWYILFNVIAGASSIPRDLYLAADNFGLKGWIWWKRLALPGIFPFYITGAITAAGGA
                     WNASIVAEYVSWGNITLKATGLGEYIQASTTAGDFPQIALGTAMMCVYVLAFNHLIWR
                     PLYRLAEERFNFN"
     gene            31234..31764
                     /locus_tag="JBH85_00625"
     CDS             31234..31764
                     /locus_tag="JBH85_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmL"
                     /protein_id="HAU0944696.1"
                     /translation="MNKTITIALSLLLSIASKLTYAGPDRAQLAVWANEAIIATYTFD
                     YKNYMQQQKEIAKYFSADGWIAYSKALNQSKLPEVVQKNAYFVNAVATEPPKLITLDP
                     THWQAIMPILVVYKNPQYEQKQNLKVVLGFTVASPGQGVRGFSVTSLQSTPISPPCQC
                     KIEETPGNTKQGDAKQ"
     gene            complement(31739..32218)
                     /locus_tag="JBH85_00630"
     CDS             complement(31739..32218)
                     /locus_tag="JBH85_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3592 domain-containing protein"
                     /protein_id="HAU0944697.1"
                     /translation="MGKNMVWPIIWRWILDLGWLCFLLILFWYFWKKRRDLVEARSWL
                     KAKGHVTRCEWTRVGHSVWPRIEYIYEVYEKDLTGEYLFLDTTFNTPNSKYSRSIAYK
                     VAIAYRDNSEIDVYYNPNRPEQSALDVTIPKKLTFILILISSLILLHIGIIVWRLLV"
     gene            32341..33423
                     /gene="gcvT"
                     /locus_tag="JBH85_00635"
     CDS             32341..33423
                     /gene="gcvT"
                     /locus_tag="JBH85_00635"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094172.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HAU0944698.1"
                     /translation="MTAKTPLHTTHLACGAKMVDFHGWDMPLHYGSQLNEHHAVRNDA
                     GMFDVSHMTIVDILGAGGRQFLRKLLTNDVDQITHNGKALYSCMCNEHGGIIDDLIVY
                     QRASDNYRVVLNSATRQNDVAWIRAKSEGFAVGLQERRELSMLAVQGPNAIAKTLSIL
                     APAHVDAVSTLTSFECVDVDHWFFARTGYTGEDGLEIIVPNEFVTQLWNDLLHAGVTP
                     CGLGARDTLRLEAGMLLYGQDMDETTTPLESGLAWTVKWEPEDRGFIGMGALVSQKQQ
                     GIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPMETGEQ
                     VLVDIRGKLIPAKVGKPRFIKQGKPV"
     gene            33457..33834
                     /gene="gcvH"
                     /locus_tag="JBH85_00640"
     CDS             33457..33834
                     /gene="gcvH"
                     /locus_tag="JBH85_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HAU0944699.1"
                     /translation="MNDLKFTTTHEWLREDEEEVTVGITDHAQELLGDMVFVELPEIG
                     DEVSAGQELGVVESVKAASDFYAPISGVVTAVNEAVGKNPALVNHDPYHEGWLVKLKP
                     SHPDEIKSLLSDEQYQNEIAEEN"
     gene            33837..35207
                     /locus_tag="JBH85_00645"
     CDS             33837..35207
                     /locus_tag="JBH85_00645"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HAU0944700.1"
                     /translation="MPYIPHTPDDTKEMLEAIGAQDIQDLFDEIPASLQYAGFQNIPA
                     GINEMEMLKEAQNQAQKNRNGICFIGAGCYEHHIPAAVWDIASRGEFLTAYTPYQAEA
                     SQGTLQLLYEYQTMICELTGMEVSNASMYDGATALAEAVLMAVRLNKHSKTNRVLIAG
                     TVHPFYRETIETIVRNQHIEVITLPFDEQQGITNLGSLNQYTGEDITALVIAQPNFFG
                     CLEQVDKMTSWAHHNKTISVACVNPTSLALLKPPGSWGEHGVDIVCGEGQPLGSPMAS
                     GGPYFGFLSTRMAHVRQMPGRIIGRTVDKDGKTGFSLTLQAREQHIRRAKATSNICTN
                     QGLLVTAATIYMSLLGPEGLSQVATQCHQNTHELITALTQIEGVELAFKAPFFHEALI
                     KLNQPVQSVLQQLADAGIAGGYAPEQHYPQLANTLLVCATEVRTAEDIAKYAKTLKTI
                     MSKRGA"
     gene            35207..35515
                     /locus_tag="JBH85_00650"
     CDS             35207..35515
                     /locus_tag="JBH85_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase"
                     /protein_id="HAU0944701.1"
                     /translation="MFIVQLTYLVPINEVNKYLQAHREFLDYHYKQGLLVASGPMKPP
                     TGGIIIAATNDRAHLESVFKQDPYYLAEIAEYQFIEFTPVKHRNELKELIQKTEGKLC
                     "
     gene            35509..36963
                     /locus_tag="JBH85_00655"
     CDS             35509..36963
                     /locus_tag="JBH85_00655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase subunit 2"
                     /protein_id="HAU0944702.1"
                     /translation="MLIFELSKTGRQAKAQIPRAVSKNYSIPEEFQRKSPPRLPACSE
                     LQVVRHFTCLSQKNFSIDTNFYPLGSCTMKYNPRGVHKAASLPGFINRHPLAMDNESQ
                     GFLETLYKLQNYISEITGMPGVSLTPMAGSQGEFAGVAMIKAYHQSRGDTARDEILIP
                     DAAHGTNPASAVMCGFKVVEIATAPDGDIDLDELKRKVGPRTAGIMLTNPSTLGLFMR
                     QIKEIASLVHQAGGLLYYDGANLNAILGKVRPGDMGFDVMHLNLHKTFATPHGGGGPG
                     AGPVAVGKRLIPYMPLPVVKKTDSGYHWATRQDYPQSIGRLSCFMGNAGILLRAYFYM
                     LVLGKEGLLRVSEFATLNANYLLKELTKVGYTAAYPDRRASHEFILTLNSEKKNYDVT
                     AMDFAKRLLDYGVHAPTTYFPLLVPECLLIEPPETESKEELDAFVAVMKIIREEASKQ
                     PDILKAAPHTLPVKRLDDVKAARELDLNYFATHE"
     gene            37168..38412
                     /locus_tag="JBH85_00660"
     CDS             37168..38412
                     /locus_tag="JBH85_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HAU0944703.1"
                     /translation="MVVELDETPVRTLLARQGIYDKNSAIVAYELLYRNSDAENSHVD
                     NLNQSSGEAATSSVLVQLFANLDVNTIIGNKQAFINFTHSHLVQKIPMLLPKNRIVIE
                     VLETVAIDQPLLLNLMELKKQGYQIALDDFVFRNELAPLVDMADIIKIDVLHLDQQQI
                     AEQLLPLKSFRGKLLAEKIEDKQQFNHCVNLGFDFFQGFFLNKPDSLTGQIITENKIQ
                     LLRLLTEINNEEVPIQRIEEIILQIPKLSYRILRLANSASLYMSKKIESLMDAISQLG
                     LMQIRNWLNLLLLASLDDVAPDLLERTLIRAKMCESLAKSMDYPNSHQAYTVGILSTL
                     DGILNEPMPSLLAKIRLSETLNEALLNYKGDLGKILKFAIDYEQANFNQLERIPVKSE
                     TLSQSYLKGIEYANHVIDIINK"
     gene            38490..38687
                     /locus_tag="JBH85_00665"
                     /pseudo
     CDS             38490..38687
                     /locus_tag="JBH85_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096200.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            38727..41996
                     /locus_tag="JBH85_00670"
     CDS             38727..41996
                     /locus_tag="JBH85_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944704.1"
                     /translation="MFIYNSWNVKFILLFQIMIIRELFNWIHNDSAPLHLSDQTIERD
                     LIEQEESQAKQTHRVLLGNVRLLKYSGSSNTEAIKELEQHCLFMDYLQLYKQEFVKDG
                     KNTVFLIALRNLLSHSHEEQLRLMPKINELFQILLRDNKESALSFYDKNKELFRHCTE
                     IQERVTFELFQQKIEADSKSVMTQLDYFNEHLAYQENPLGIIALCRNWIGETEKFTAL
                     ILWLLERKVSVEKILLTNLLQDFLRYHLFTLHSRDNEVSRLYSLLGHFPEAQELVMAA
                     QKISCGELMFQQYSLDGTFRGKNLPVVSPEIPPLQFSLSKDNFIALHRTFGPAFLTAG
                     IATATNHDEVAWLDMLRHTLNQPETLKLLPDIINIIAREYSPKVLKTLAELIAESTAH
                     QLLTLNQSCVFHLLQHKPRLLHDITEENVIGYINHLVRLDTHDQEIIYQLMALFRVLL
                     KKNHPATKAVFEAILDNLVNHPQLLEDEEFLTQLKKYPDCELLLDERCENILKQLNFC
                     IAEQTSGLLFGKHNYFIIEDVWLGALRKFAVLQQINPQMKFSFGHKYALQARIAEVVF
                     IHQGDLFDLDTFIDALDLPLVTSSGEISPYERALIEILATIDNELIRKQIIQKLETTP
                     FNRLDWHEREYGNQTVFIKAAKKGNLGLINLLEDKMEPSVLNKALRAAAKNYQWETLD
                     HLCSLPGVELRQDEIDDLVVYLAEHGRIESVKKLLKLYDYKPSTELIGTILKKAIDND
                     NLQVVMYFCKLPVESPKQSMLDRLFKLAIQLQHWDIVEYLANSKHYSPSQTTLEKAFQ
                     QTALAMQHEAVEILGNVEKNPVRAIVIERALLKASKLGHTKVVQSICALPSESLTKQA
                     IEDALEQAAAEGHLDIVSCLCEPGTTTLRQPGINSGMKIAVQTGKLSVVNYFCSMTGS
                     NKPTPRLIDQTLVMAAKKGQTAIFMAIHSNRQTPPGKHAIEQSFQLAITAGKLQILDY
                     LCRHESYGLNQSRIDQALISAVKSKQLGIVSYLCESLEITPSRKALKIAVSKAISSDQ
                     TELADYLRSRSSGKSKPLDTPTDEMASPLEIGKQLATNGLFKYKRKDAKEPPLLLNPS
                     L"
     gene            complement(42302..43342)
                     /locus_tag="JBH85_00675"
     CDS             complement(42302..43342)
                     /locus_tag="JBH85_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HAU0944705.1"
                     /translation="MMVMRSFSFYYQHLENVSRSFSFCISQLTYPAKEWVALSYLLLR
                     VADSIEDAKWQDLQTQSDSFAAFKSFLVQTPANDQFTKWLSSFPSQLPLGEKQLLCAV
                     PLLLEEKDNLPESIKQSVIKTILQVVDGMHYFLNHYHMEGKIVFPSLVTTNQYCFFVA
                     GLVGKLLSHIFTDLLSNFKWTASLLNQAFHFGFFLQKINLLKDRVDDETSGRYFISSE
                     NSLRESLVIHAHHSLAYVKSIPIIEGRPYRLFCAWSLFIGLASLKWLDKYGHRQKIKP
                     RETYYLVNQINLLIDDNRALEKLFNSYLPEQCKERSRYISESSKQIPAWFKKIYDGEM
                     DSLTLFELDVQV"
     gene            complement(43339..45141)
                     /locus_tag="JBH85_00680"
     CDS             complement(43339..45141)
                     /locus_tag="JBH85_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HAU0944706.1"
                     /translation="MIQLGDLLKPTWAAERSLNNAWSVLNDEEKETIKSRMDKIFYNE
                     IPFQLEHDKLIYIHLFSLFAQLETIGLRGLIKSLEKLRGTDLYQQMRQQITDEIFHAT
                     VFAKVAFQLSAPYALPLGHQKSINHFISSLEGEEDLATSITLVNLVGEGWVEELCIAM
                     KEKNIAVTIFETVLEDESRHMDEYDLYRQIGLPNKDYLRKKLAIFEDELINTVFAHEQ
                     YLTTLGILLGKEGALKLLNNINNKHHWMLKKIGLTPSAHWQLFMDTMPLLMKNLSHDF
                     EKDKAIEPTNIRKLLSAIWNDPELPTESAIFNINVTPVCFFEKKFKPETITCLMLQAL
                     SKACFDNPQTRNYIFNHKLYHSHNSYVALAVKIPGSDQLGAIEFKNCHEMTMTELAQH
                     IQHDMRIMKYCYEKTQSLQKEHPYLIEVVNRLLTPRHERVYRDFLFARPAISLSNIGH
                     WGYQAAVSPLFPNETFKITLTEIERKQVWNKTNNTFEVQDVLPVGMSVDHRVFDGNIP
                     FPRYMQEAFDQMFQDMEQSRIKPLSKPFSNLDSFIKYSNTLLENDLEFGFLYLFSLMH
                     VWKNYISYDELSKTVEENYERIKQALSKSEHQLG"
BASE COUNT        14281 a         9379 c         8923 g        13067 t
ORIGIN      
        1 aatttaaact taaatttaca ttttgctcta atattgtcat tattttcaac taaaaatgaa
       61 tggtcttctt gccgatttat gccttctgag cgacaatagt gcctcagtta aatgcaaaag
      121 agtaggcatg aacagtttta cagaattagc taatgcagta cgcatgttaa gcatcgatgc
      181 agtaaaccaa gctcaatcag gccaccctgg catgcccttg ggtatggctg atattgccac
      241 cgttttatgg aaaaaatttc taaaattcaa ccccaaaaac ccgcactggt ttaacagaga
      301 ccgttttgta ttatctaatg gccatggttc catgcttctc tattctttac tgcatttgac
      361 cggatacaac ttggatatta gcgagcttaa aaacttccgc caattgcact caaaaacacc
      421 agggcatccg gaacatgggc acactcctgg tgtcgaaaca acaacagggc cattaggtca
      481 gggtttagcc aattcagtcg ggatggcctt agcggagcgt gtgctggcta gtacctttaa
      541 ccacgatcac tttaacctgg ttgatcatta tacatatact tttgccggtg atggttgcct
      601 gatggaaggc atttctcatg aggcgtgttc tttagctggc actcttggtt tgggaaagct
      661 cattgtattt tatgacgaca atgggatatc tattgatggt aaggtagaat cctggtttac
      721 ggacgatact acgtctcgct ttaaagccta caactggcaa gtcataggcc ccatcgatgg
      781 ccacgacgca gatcaaattg agcaagccat atcagcagca cgcgagaaca cgactcaacc
      841 ttcattaatt atctgtaaaa ccgtcatagg actgggctcc tctgtagccg gtagcgaaaa
      901 agcgcacggc tctccattga gtgcccaaga cataaataat gtccgtgaat tttttaattg
      961 gaaacatgct ccctttgaaa ttccagattc gatatacaag caatgggatc atagagagca
     1021 aggagaaaaa gaagagcaac aatggctgca gctcctgcat gaataccggc aacaacatcc
     1081 atcggaacac gatgagtttt tgcgtcgtgc caatggcgac ctgcccgatg attggcaaga
     1141 aatatcggct ggattcctaa aacaatgcct gaacaatgag aaagccatag caacgcgtaa
     1201 ggcgtcgcag caatgcatag agtttttcgc gccaatatta ccggaaatgt ttggcggctc
     1261 agcggatttg actggttcca ataataccga ctggtcaggc agcaaagcca tcacggccca
     1321 taatttttcc ggaaattacc tttattatgg agtgagggaa tttgccatgg cagccatcat
     1381 gaatggactt gctgtgcatg ggggattcat tccctacggc ggaacattcc ttgttttcgc
     1441 agattatgca agaaatgcca tccgtttaag cgctttaatg aaacaaagag tgatatacgt
     1501 attgactcat gattctatcg gtttagggga agatggcccg acacaccaac ctatagaaca
     1561 tatcgctatg ttaagaatga cccctggcat gacggtctgg cgccctgctg atttgatgga
     1621 aaccgctgtt gcatggcaac aatcgttaga acatcataat ggcccgtctg ccttattact
     1681 ctcaagacaa aatctgcccg ctttagccca tggcaccgat gcggctgact tgattaagaa
     1741 aggcggatat attattgccg attgtgaagg gaaacctgat gctatcctga tagccactgg
     1801 ttcagaagtt caactggcta taaccgcagc agaaaaggca aaagcaagag gtctccaggt
     1861 cagggtggta tccatgccct gtgctgagcg attccttgcc cagagtgatg attacaaaaa
     1921 ccaggtatta cctggtcagg ttcgcacacg tattgcgata gaagcagcta gcagtgccta
     1981 ttggcaccaa tttgttggct ttgacggcgc tgtcattggg ctggattgtt ttggggtatc
     2041 agctcctgct acagatgctt ttaattacct tggaattaca gtagaaaaaa ttatcaatac
     2101 tctagataca ttaaccaaac aaacaatggt gtaacccata ccccttctga agtttcaaga
     2161 aggcctgtat tcagtataac tgagtatgga ggttacccta actcggagaa gtagtatgac
     2221 aatacgagtc gcgattaatg gctatggccg cattggccgt tgcattttaa gatcgatttt
     2281 tgaatacaac aggcaaaatg agtttgaagt cgttgccatt aacgatttat ctggcatcga
     2341 tgtgaccgct cacctgactc gctacgattc aactcacggt ccttttcgct cggatgtgag
     2401 catagaagga aacatgctga ttgttgatgg gcatggcatt caagtgattg ctgagcgcga
     2461 tccggccaaa ctgccatgga aacaattgga cattgatatc gtctttgaat gcaccggttt
     2521 ctttaccagc agagatgcgg caatgggtca tatcaatgcc ggcgccaaaa aagtattaat
     2581 atctgccccg gccaaaggcg ttgatacgac agtggtctat ggagttaatc actccgtcat
     2641 caaagcgtct gatgtcattg tgtctaacgc ttcctgtaca acaaactgcc tggcgccagt
     2701 agttaaagtg ttaaatgatg ccataggaat tgaatcagga ttagtcaaca ctgtccatgc
     2761 ttatacaaaa gatcaaatgc ttttggatgg aagccataaa gatttacggc gcgcccgctc
     2821 tgcaacgcag tccatcattc caaccaaaac cggcgctgcc gcagccgttg gattggtttt
     2881 acctgaactg gcagggaaat tggacggatt tgcgatgcga gtaccggtat taaacgtatc
     2941 cgttgttgat ttaactttcc aggcaaaacg cgcaacttct gtggaagaaa tcaatgacat
     3001 catgcgcaag gctaaaaacc gaattttaca aattaatgag gaccctttag tttcttgtga
     3061 cttcaatcac aatcccgctt ccgctatttt cgacacaacg gaaaccaaag tgataggcaa
     3121 tttggttaaa gtagtagcct ggtatgacaa tgaatggggt ttctctaacc gcatgattga
     3181 taccgcacac caaatgatga actgctaaag gataaccaat gaacctgatt aaaatgagcg
     3241 acattgatct gtctggcaaa agagttctga ttcgtgagga tttaaatgtc ccgatcaaag
     3301 acggtatgat taccagtgat caaagattgc aagcggccct gcctacaatc aaatccgctt
     3361 tggacagtgg cgcagcagta atcgtattgt ctcatcttgg gcgtccggag gaaggcaaat
     3421 acgaaaaaaa attctctttg gagcctgttg ctgattattt aagggaaaac ctggaatatc
     3481 ctgttcgctt cgtcaaagat tacctgagcg gcgtgggtgt aaaccctggg gaattggtcg
     3541 tatgcgaaaa tgtccgattt aatcccggtg aaaaagccaa tgacgaagct ttggcaaaaa
     3601 aactggcaag cctttgtgat gtctttgtca tggatgcttt tggcacggca cacagggcac
     3661 aagcgtctac ctatggtgtc gctcaatatg ctccagttgc cgttgctggt cctctgctaa
     3721 tccgtgaact tgaagcgtta aaccaagtgc ttaaagcgcc taaaaaacct atcgtcgcta
     3781 ttgttggagg agccaaagtc tcatccaagc tcagtctatt gaaacaattg gtgggtatgg
     3841 ttgatgttct tatccctggc ggcggtattg ccaatacttt tctgaaagcc caagggtttg
     3901 aaattggtat ttccctttac gaacctgatt tattggatga ggctcgccat atccttattc
     3961 tggccaaaga gaaaggttgc caaattcctc tacccaccga cgttgtagta ggcaaaacat
     4021 ttagtgaaac ctgccctgct ttcaacaaat ctctgtctaa tgtggctgcg gacgatatga
     4081 tccttgatat tggcccagaa accataagag attatgtaga cctcatccat gacgccaaca
     4141 ccatcatctg gaatggtccg gttggtgtat tcgaattccc gcagtttgct tatggaacta
     4201 gagccattgc tatagcgatt gccgagagtg atgccttttc tattgctggt ggtggtgata
     4261 ccttggctgc tgttgatctt tatgatttga atcaacaaat ttcttatatt tccacaggag
     4321 gtggggcatt tctcgaatgt ctggaaggaa aaaccttgcc tgctgttgct attttgcagg
     4381 agcgcgcaaa acatgttaag acgaactaag attgttgcca ctttaggccc agccagcaag
     4441 gaacctgaaa ttctgcgatc catgctggct gctggagtca acgtagtacg aattaatttt
     4501 tctcatgccg attcctccgc cctgcaatta attgcactgg ttcgtaaaat cgcagacgaa
     4561 ttaaaccacc cggttgcagt catggctgac ttacaagggc ctaaaataag agtcggccgt
     4621 tttcaaaaca aatccatcac tttaattgat ggacaaaatt ttacattgga ttgtatggcc
     4681 ccagatactc tgggagacat aaatggcgta tcggtcgctt atcctaattt ggccaatgaa
     4741 ctcagtattg gtgatcatct tctgattaat gatgggttaa ttgaattgga agtcatagag
     4801 atttccgggt caaaaattca ttgcaaggta gtggaaggtg gagtactcac tgatttgaaa
     4861 ggtttgaatc gaaaaggtgg cgggttagca gccagaactt taacagaaaa agatagaaat
     4921 gatttacgta cagcaattga agcagaagtg gactacatca gtttatcttt tgtaaaagac
     4981 gcagaggata tccggcaagc aagagcgcta atgaaagact atggggccca aataacccct
     5041 attatcgcta aaattgagcg catggaagct ttggatcact taactgatat tattcgcgaa
     5101 gcagacgcca tcatggtggc cagaggagat ttaggcgttg aagtgggtgc tgctgaagtt
     5161 cccgccattc aaaaacacat catagaacaa acgcgacttt tagataaagt ggtgattacc
     5221 gcaacacaaa tgatggaatc catgataagc aatcctcagc ctacccgtgc cgaggtttct
     5281 gatgtagcca acgcgattct ggacggaact gatgctgtga tgctttcggc tgaaacagca
     5341 agcggccttt ttccagtcaa agtcattacc atggtcaata aaatatgttt aagcgctgag
     5401 aagcatgcca gcttttttta tcatagtgat ccggaaacct gtcattatca acgggctgac
     5461 caggcaatcg ctatggctac catgcatacc gccaatcatt tccccattca ggccattatc
     5521 acactgaccg aatccggaga cacggcttta tgggtatccc gacaccacag caccgttcct
     5581 atttttgcta tatcagccaa taagagaacc attggtcgtt taagccttgt aaacaatgtc
     5641 tttcctatct acattgattt tcatcaattc aaccccgaag gattgaatca acaaatttta
     5701 catgaattaa tcaaatcagg gcaccttgaa aagagaggct atgtgttatt aactcgcgga
     5761 acccaaattg gaatgcctgg cggcaccaac tgcatggaaa ttatacctgt tgtctgagtt
     5821 caagatatcc tgttaattaa agcaaggttc tttcataaaa gaccaaaatg attattttaa
     5881 tgacacttta atcaaattat cacctctatg ctactattaa gcatagaggt gataaatatg
     5941 ccagatcata actcatcaga tattccgtta tcgcagcaaa tagatgaagt caggggattg
     6001 ctccttaaag cccttaaagc gcaattggat gatctgatag ctggaaaact cacaccacaa
     6061 ccaagtggcg ttccttttgt tcattttgag aaggatccac cacaaattgc aactctaaaa
     6121 aaagtcatta attgtcttta tcatgctgag gaagcattta aaagctggga aagcattgat
     6181 accagtacgc tattgggtaa agccaaagca gcacccaaat taatccgtgc actaacccag
     6241 atatacaaat ccctgggttt acttgatgag gctacccctg aaataaggag tgtcatagcc
     6301 gacaattatc atttacttga accgctgttt actcaagctt ataccatcgt gcaagagtct
     6361 ggctggctat cagaattcat ggaaatggat gtgaccgata aagcatccaa agtgatcttc
     6421 caagggatgg atttattggg tcccgatatc gataaatggc atgatacgca tcctcttgtt
     6481 cacgcctttg caaaaatatc aaaactggta gaaaccatat ccaaactaca agaaaaggac
     6541 atgccaggaa aagagaaaga acaagcggta gaattggttc gcgccttact tgatgacctg
     6601 gacaataacc cttttatcag caaattaagt atcagtgatt ttgaagactc aaaagccata
     6661 aaggatttat tagaatggtt taagaacata caagacgatg gttttgattt tagcaagaaa
     6721 tccattaagc aatatgtttc ctgggctaat cactatttac ccacattaat caccttcgct
     6781 gatcaactgg aacgacaaaa ctatttaaaa ccaggcagtt taagtaccaa tttgtgttct
     6841 caaatagagc atttaggcaa gcaagtgaat ggcatactat ctgaacctaa ttttggtatt
     6901 actgagcgcg ttgtatccat agaatcattg aaggggaaaa gagagcaaca aattcataat
     6961 gctcaggcca acagtgtgcg agctatcatg gctaccgaaa aacagcaagc ggctactgct
     7021 gatttttatc gaatcctgga agcctataag ggcatgaatc tttcacaagt tacagagccg
     7081 gatcggatat tactaagaca attatatccc caaatacaaa cggcactggc tcatgccagt
     7141 ttagatcttg aaaatctgtt aacctctgtt ttaaatacta ccggccctga aaaaacccca
     7201 gccaaaccca aatcatggtg ggaattagcc aaaggtggtt taggttatgt agccagttat
     7261 gtggtcaatt acaacgttga taaaatcctt ggaaccaggg agtctgttga tcgttttctg
     7321 tcaagccaaa ttgcgtccga gcaatttaag atcctgattg ctgaaaaagc tcgtgaaaaa
     7381 ttaaggacag gatcagataa gctagaagaa accgcactgc aatataaagc tgaagttcgt
     7441 gtcaatgcta taaaatcaac tctgagaaaa caacccttgc agagggaggc tcctccatcc
     7501 acatttgttg cagtgaaacc ttcgaaatta gtcaatcttc gtggaacact aactgccatt
     7561 caggaaatgc aattatcgac tacagtaaac agcacaagaa caaatgtcga tactctgatt
     7621 catcgccatt tgccagaaaa atatcaagcc tgtttttcaa ctcttccgta tcaagtcaat
     7681 gaaaaggatc ctgagttggt gaaacaaatt aaaaccattg aaaataattt gtttcaatta
     7741 gaaaaagcac ttaaagattt tgaaaaaatc gatttgagct atggaattat gatccgattg
     7801 cattatttta tcgcaatcgc ttctgcagct tccaaactaa aatcaagtgt caaagaactt
     7861 tcaccagagg gtcaaaaagc actagctcca ctgttgcaac aaattatgac tttagggtca
     7921 tctttctcag acaccaatta tacaactaat gacttatccg ccttgcaaca attaaaaaca
     7981 gaaggccaag ccaggcccgg aagtccactc ggaacatctc cggaaaaaac aaaaacatta
     8041 cctgaagaaa ctataaaggg aaatgacaaa aaaccaaaag aaaaaacgac tgaattattg
     8101 gattatgctg ataaaatcag tactgctcgg acattgttat taagtaagtt taaatccacc
     8161 ttatctcccg ccatagccga cagtttaaac ccacaggaac atggcgttcc gtttattcat
     8221 cttgatcaag acccgcctca aacagcggca ataaaaaaaa tcatcaacag tatgtatcat
     8281 gcggagtgtg ctcttaaaac ctggcatggc atagatacca gcactagatt aggtaagatt
     8341 gctgcagcac atcaaggcgt agcagcatta tcccaagtgt acaaatcatt tgcgttgttt
     8401 actgaggatt tctcagacat tcacaattta attcgtgaga atcacgattt aatagcacct
     8461 gtgatcatcg aagcaaacaa gctggttaaa gagtatggat gggcaagtca attcagtgaa
     8521 cttgacgtcg cccaaaaact gggaagcatt ttaggtcagg gaattaatac agttcaacct
     8581 aaaacggatg aaataaccca aaccgcttca ctggttaaat tattttcaga aattccaagg
     8641 ctactgaaca atatttcaag ttcattggat gaaaacgctg agaaatcagt tgatgagtta
     8701 agaatcaaca gcaaaaaaat tgaagccatt ggcgcagtat ttgaattgtt ttttgaagaa
     8761 aatgcctact taatgagcat gtttaaagga ttcagcgcta tctcaggtct tatcgaatta
     8821 aataaaaaaa ttcaacgcga aggaaacaac ctgcaagaaa tcactattcg acaataccag
     8881 aaatggttaa aagaaggtta tcccaatttg atgatgatgc ttgatgaaat tgagacacgc
     8941 cactacttaa ccccaggcct gttatcagca cctattgccc tggaattaga ccaaattaac
     9001 gacaagctta atgaaattat tgaaaccaaa cctgatttta aattacaaaa aattcctctt
     9061 tcattctata tgggagataa gcgcatagag cgcttaatga ctaaaaaaac ggaacactgc
     9121 ctcgcattgc tgcaaataga agagcaaaaa aaagcagtga acactttttt cgggatactt
     9181 aaacactatt caggccaacc gctgtcaaac ataaagccaa atgagctcgc tcaattgcgt
     9241 cttgcttttg ttaagattca atccgcaatg gcgaatagta atttggaatt aagcaatgat
     9301 tttgttgctg ctttaaatca acttgaaacg tccccatctg aagaaataaa taaaatcaaa
     9361 gttacagtct ctcaattgat aaaattgcaa cctgctgttg aaaacaattt aagcgaacag
     9421 aaaaaatcca gtgaattaaa aattgcagtc attgataaag ccatagagca cgttatagcc
     9481 aaatctttcg agttaaaatc tgatgtatca aaagaaatca atatacccca gctgcgcaga
     9541 acatttttag aaactgaaag caagaagcct attgtaggtc ctggggaatt aaaaccaaca
     9601 tcggtctcat ctctcaacac cgttcgtggt aatttggctt acattcaaga attaaaatta
     9661 tcatccactg tgggtatgat acgagagcaa ttttcggctc ttaccagaga taatttctcc
     9721 actcgaatgc aaaaatattt aatcaaacct ccaggtaagc ctttgcatgt gataaatgac
     9781 aaagatccgc tcatggtaag gcaaattaaa gaagtcgaaa acagtttata tcacctggaa
     9841 accgctttaa aacaattcga gcaaatgaaa aagagcgaca gctttgtatc gcaaacaaaa
     9901 gcgttggtag aaattgcaaa ccatgctcat gaattaaaaa tggcagtgga acgattttca
     9961 cccgagttaa aagagcatta tggcccagta gttcgtaccg cattgagctt cagcaataaa
    10021 gttcaatcca tcaattacaa caaagaggat tgggctgatc ttcagtttat tctgaataga
    10081 gcccataaag aattgttaaa aagaaaaact ccaagagacc atcgtattga aaaagctttt
    10141 tttgaagccg ggattcgtga agtacaaatc gatcggactg aatcagcagg aaaaaaagcc
    10201 gcaaaactgg gtgtaaaata cgcgcatctg gcctcccctc agttagagaa agcaagagcc
    10261 tatttaagtt ccagatacaa aaatgcgttt ggtcaacaac ctaaggctat tcgttcgttg
    10321 actcgagaac aattagcaaa tgaagaattt atggacgctg aaattagcag attgaaaaaa
    10381 acattggaag agaagtatgg ttttaatatt gcaacgatca aagttcttct tgctttatta
    10441 gaacaaattc aacgggctgg agctcaggct gctgaggtag ccggtatggt caataccttg
    10501 gttacttatg acttccccaa gataaaagaa aatgcgtata gggatttact gacaaaatta
    10561 tctcaggaag aagactatct gaatttaaaa ccaggcacat taattaatcc agccatggct
    10621 gcagtcaacc aattattctt atctgcagcc ctggaattgg acatgccttt tagtaaaaaa
    10681 ttatctattc tggacgatac cacttatgtc aatattctcg tcagacaaac cgaaagcgat
    10741 ctgcaaacat taaggaaaaa gctatccgaa gatccctcga atcatgaaat agcatttgaa
    10801 attgagatta agaacgataa actagctttc ctcaggcaac agatggtgtt gcttgaagat
    10861 aaaaacccca atcaaaccag aaatgtctta ttggacatgc agttcgaggt gtcattacgt
    10921 aatcaccttg tttatacaac gcttaaagca cccattgccc aggaatatga acaaattgcc
    10981 agagaatatt acaaaaaaaa caaaaatcgc tttctgtatg ccgatgactg ttcaaaagag
    11041 ttgctgcaag gattgaaaga atttgaaaaa aaacatttgc ctgatcattt gatagttttt
    11101 gaagcctacg acaggcttcg cctattcagt gcaaaacttc cccctaaaaa tcaggatgtc
    11161 aaagagtata ttgagaacat caatagagaa ttacaaaata gagatatccc tatagagcaa
    11221 cgtgctataa aagttaaatc attacctaat gacgctgtct ttattgaaaa attaagttca
    11281 gcagataaag gcactcattt cctaagaaaa ttcattcagt tcattacaat cattacagca
    11341 agcatcactg aagcaataaa aaccgggggc agtttgattt atatttatcg ccaaaagcaa
    11401 atggaacaat caataaagaa tatagaaaaa tcgataagcc ttaaagaaga acttcatacc
    11461 ataaaaaata ctgatggcgc ttcaccccgc aagggagaag ggcaagaagg tgaaatcgaa
    11521 tttaccaaat tgtaagactc aataagccat attggtaaaa aatgattcta tactctggac
    11581 ttaccccgtg aacagtgtgt aaacagtaat ggcaaaaata ttgatgtgaa atgcctaagg
    11641 ttgttttaaa atcataaagt aagcatcgac ataatcgggt aaatctcgag tagccctgta
    11701 caaaacgtcc tttcctgcaa agcttcctgc caaataatca atttggtata aattattatt
    11761 aaaagccccc ccagtatcag ccaggatgcc cattttagtc attgtgcgtc ctgatttgtc
    11821 ttgatactga atcattagta atttccctaa accaaactca gccaaatcag ctgcaaaggt
    11881 caccttgggg ttaaccgtaa ttttgtattc agcgtcctta ccataaccct taattccatc
    11941 gacttccttg aaataccaaa atcgctcctg ctgataggga gttttagttc gatcataagc
    12001 aatattatta ctacgatgga cattaaatat tctcttgcca gcagtcggtc caaaatccgc
    12061 gacaacggta ccttgcagta aagccgcctc caaatcatct cgacttaaat aagccaattc
    12121 gctaaccggt tgatttttaa gagcaccgga taatattgct tgcttaccat atctgaaacg
    12181 gattagtcct ggtttggcat ttgctttatc cagagtcaaa ttctgctcgt cttcgggcaa
    12241 agcgtacaaa ggatagggtt tcgcggagct tggtttggta ctggcaccag ccaaatgcac
    12301 aaaatattta gtcatcaata tcttatcttt gggtatattt tgtaataatg gtttattggc
    12361 ggataattgt ttggcttggc ttaagtcagg ataccatcga ataaagtcga aatgttgttt
    12421 tacaaaatct gggttattta attttttttg gttttgacaa ataaattcca aggttttttt
    12481 cactctgtct aaagaaatct taatgacttt tccatcgtga atcacttggg gatcataatt
    12541 tttgccttta tttaagtagg ctaaagtatg ctttgctgta ctgcataatt cagttccctt
    12601 aatgtcatat actccattca aggcaggttg ggatggaaag aattttggcg cagcccatag
    12661 tggagaaata aacagcactg ctaaaaataa tgtcgctatt cgcatttact ctgttgtttc
    12721 ctttttctct tctgcttttc gagacaatcc taatttttct tttaaacggg ctacagcatc
    12781 cggatcatat tgctttggtg ctttatgttt gactacgacg gatggtgact tggcggattg
    12841 cattgccaca ttttgtgagg cataggtaga gcttctgaga ggatatattg gcaaaagagg
    12901 ctcaggatga gagtcaaacg aattcattgg cttaacgctg gaaactgcac ttggctgact
    12961 atttacatgc gaatgattag ccgcttttgc attcacttgt ttgcgagcat ttttaacact
    13021 cttttccacg cgttttttaa ttttcatgga agcatgctca gcttcttcct cagtaacctc
    13081 ggctactgga tttccgtgca aatcaatacg gacttcacga gctttcaggc aagccagata
    13141 atcaagacga cgggtaaaaa gaacaacagc ttcccttaat ttacttttag aaattccaac
    13201 ttgctctgct ttttctgcat gctgcaatat atcagacata ataccaatct ttaatggccg
    13261 aatacgcaaa gaattatcga atgcctcagg gaaattagcc gcaagccata ataatgcgtc
    13321 agatcgcgct cgcttggatt gatttttttg tgctttattg atgacagcgg ttcgtgggtg
    13381 cagcgcctgc tttctcattc tggtaccctt attgtgttta gtctattggc atgaaaatta
    13441 tcaaaatcat ttgatttgca aaagtctgtt gaccttgaat gtatgatagt catatcttga
    13501 agtcagatgg tgtaaattat gctattagtt actcgaggaa tgagcgcaca atgtacaatg
    13561 tttattggtt gtttgcaagc cttctttatt atttccatta agccgaatac cttttgattt
    13621 gtatccaatt agcaaaatac attatgatat gtctataatt aacttaagtc agatagaata
    13681 gcgcagagga tgcttgatag attgctaaat aaaggaacct tatcgctcaa taatgtatta
    13741 atggtgatta caaaatgagg ataatacttt caattcttgc tatatttata ccgtggttgg
    13801 ttttattgat taaagacaat ccaggcggag ctgtcgttgc gttgattatg caagcaacac
    13861 taattggatg gccttttgct tcaatctggg catggcgggc agtcaaccca cttactccga
    13921 cgtctcaatc caaacaataa gtatcccaat cctgttttta ttcaacatat aactaaatca
    13981 ggacttaaga aaaatgccaa gtctaggcaa aaaatgtttt taatgagaga gtttagatag
    14041 gctcaatgac cgaattaaaa atttttttat aaagagattg gggtttttcg gaaatcatgt
    14101 aaataattcg gagtgataaa tgcgaacacg tatcattgtt aatggtgcca atggaaaaat
    14161 ggggatacta gcctgtgaaa cattggaaaa ccatgaacag tttgaaatag tagccaaact
    14221 aagcagacag gacaatcttg ggcaaagtat actggacacc aaagcacaaa tagttgttga
    14281 tttgacaaga gcagactgtg tctatgaaaa ctctttaacc attattaatc acggcgctcg
    14341 accggttatt gggacatcgg ggttggttga aacacaaatc gatgagctca ccaaactgtg
    14401 tgaaataaaa caaataggtg gaattattgc acctaatttt tctctcggtg ccattttaat
    14461 gatgattctc gccacaaaag cttctgaata tttttcagag gttgaaatta ttgaaggcca
    14521 tcatcaacaa aaattggatg cgccatcagg gactgcttta aaaactgcag aaatgatagc
    14581 cgcggcgcgc aaaaaaccca aaaacaaact tccattaaaa gaattaaccc ctggggcccg
    14641 aggcggctct catcatgata ttaatattca ttcccttaga ctgcctgggt tgcttgctcg
    14701 acaagaagtc ctctttggca acataggcga gacactctcc attacacata acagtataga
    14761 tcgccgttgt tttatgccgg gaattgtgct ggcctgtcaa aaagtattga atttaaataa
    14821 cctggtttat ggtctggaac atttgcttta aattgcaaaa accaggttga cccgtattac
    14881 tgtcgggcat acgggtctcc ttttcacata tcaccccttg atatggaacg tttcccaact
    14941 caatttttta aacattacac ataaaccaag ccactgtttt ctcttttgga actctcaaac
    15001 aaagaagacc attctaaaat ggcttcttct gccaatgttt gtaatgtggt ttctgatgac
    15061 aggggctgta ataatttcct aatacgatca tagactgaat tggttgctgt agttcttgat
    15121 gagtcgcttt ctggccgatt taaaacagct gcaaatattt ttccaatccg aagaacatta
    15181 tcattgcccg agttttcatc atgcattact tcacgaatat tgagtattcc agtaggtgtt
    15241 gagctcacat ctttatcaga gaaccaacgt aatttccagg aatctttgct tgatttttga
    15301 aatctgcgct cctcattgat taaagcgctt agtacatcat aaagcattgt acacattttt
    15361 tcgcctagct gtttggcaat taacaagcaa tgcaattcgt tttctggtag aaaaaaggaa
    15421 cgcaaatcct tgctaatatt cttcacttca ttatcagtgg ctaatcggtc atcataggct
    15481 aatgctttct cagtgcccaa gcgctcgtta atggcctcag cgatatcgtt tggccagtac
    15541 caatcaggcg ttttgattcc ctctgaacct ggcgcatttt gccctgcaag ctcatgttga
    15601 tgtctggaga tataaagatc tacaacaata ttgatgaaat tgactcgttc ttgtttttct
    15661 ttgggaattc caaatttagg ccaatttcca tattttgctt tatacaaaat catcgcatca
    15721 gtatgcaata actctactgc ttttctgtct ttaccactga cacaggagcc atagctatag
    15781 ccgcccatgt tgagaataat cagttcttcc aaagagctaa gaaataattc cctgccatcg
    15841 taatcccaaa atgttgcaga gcctaaaggc gactctaaaa cggccttata atcatcgatt
    15901 agcgcctgca atccaggctt ggaagacgca tatttctgcg ctgcttttaa taaaaactcg
    15961 ctgtctgtat ccgttgcctg agtataataa taacgcttgg caatattaaa aggatgatta
    16021 tgctggaata tttcatgcct gcgtttgctc cgggtaaccg cttctcgggc aattttatac
    16081 aactccagat caggaggtaa ttccggtaaa aagtctgtaa ccaccgttgg aatataatct
    16141 actgcatgga tagggctaat taatgtttgc aataacaaag gctgctgagg tttggcaaat
    16201 tccatcacct taaccagatt agagtcaaca tgacgctgct ggacatcctc aggaaatttt
    16261 aacgaatcac ggctggcaac atggcttgaa cgatacctct tgtcataaaa taaagtttct
    16321 ttaccctcat catcgattaa atataaactg tgcgcaccat aattgcctgg agcaggcaaa
    16381 gttcggtgcc ggcttgataa ataagatacg acatcctcaa tcttttctgc atttttgaga
    16441 gcatattcca aaaagtattg ttgtttctcg gacaaaaccc aataccactg tggaagctta
    16501 ggcactaggc tcaaagtcga tgcgtattga tcattcctgg cctgctcaac cataaatttt
    16561 ttaaactctt ttaagctgga tttaatctca tgtggagtag cagacaagac gcgaatcatg
    16621 gcttgctgag cagggcttaa ttcattgaac caggaaggat aaggcggtga gttggtatgt
    16681 atttgattta attccgtggt caaattcagt gacctttttg caatatctcc ccaattgcca
    16741 aaaaatgtat taaagtgctg cagcgctttt ttaggatcaa cagaacttaa attcagatta
    16801 caataataag cttgttgata gggcggcaga tttttaaacc aggcaggtgt tttaggaaaa
    16861 ttatattctt ttaattgttt taattcactt agccattgtt cataaacggg agaaagggat
    16921 tcatcatatt gcaaaacata ctttgtctca ctgcccattt caataggcat tatggtagcg
    16981 atatcgctac gaccccgact cattaagaca tactgctctg cttcattaag gctggctatc
    17041 gcctctttga ctgccttacc tttaggccat ttccacgcga ttgcaatagc ttcaaccaat
    17101 ttggccgtaa atcgttcgag ctcaagatgc aactcttcta atgtcagttt ttccaggtca
    17161 catgaagcct tgcattctgc ggcataagta cttaaggttg caaccgtcag agaagtatgt
    17221 tttggatcga gggggtaagc ttttaagata aatgaaaagg catcatgaag gctgtctatc
    17281 cggcgagcga tgcttttacg ataatctggc tgctctttga aatactctac tttgtaacca
    17341 ggtagaagtc gctctagtgt atcaaatacc tgaggagata atattgtatt ttccaaaaca
    17401 cgtaaaatta taccttttcc catagcttaa ttcccttact gccttaattt cctcattatt
    17461 gtataaataa ttcaaagtga caatgttttg aattaacaat tgaattatat atttacccta
    17521 agatatcagg aagttaattg ccttaatagc attacttcat gctaaactag tttttttgga
    17581 ggaatagtaa aaggatagct atgaaaagta tagaggattt tacaggtttt tcagaatccg
    17641 ggattgatga tgccattcaa aatgccttaa aaaaagcagg taatccaact cattttgaag
    17701 tcgttgaaac actaggttca caagatagcc aatcagatcg acgatatcag gtaacgctta
    17761 aaacactgag tgattaatca ttaagtaacg gcaatcattg gctagaaata aatgacaaaa
    17821 atttaatgtc aattctgttt ctataactat tatctagcta ctgcctttca atacaaggag
    17881 tttaaaaatg ggatacaatg tgcctcacta tattggtgga caacttatta atgaaacgga
    17941 tactgaagct caagccattt ataatcctgc tctgggtgaa attattggcc aagtccattt
    18001 tgcgtcaaag gcaacctgtg atagagctgt ggctattgcc aaagcggcag gaaatgaatg
    18061 gtcgcaaacc cctgctataa aaagagcgcg agttttattc cgatttaggg agttgctgga
    18121 aaaataccaa atggatctgg cacgaatagt cactcgtgag cacggcaaaa cgctggatga
    18181 tgcgaaagga tcggtggcca gaggcattga ggtagtggag ctgcactgcg ggctcgtcaa
    18241 cgagctaaag ggagattttt ctgctgaagt ggccagccat attgattgcc atacttttcg
    18301 acaacccttg ggagtatgtg ccggagtatc tccatttaac tttcctgtca tggtacccat
    18361 ttggatgatg attcctgcca ttgcttgtgg aaataccttt attcttaaac cttccgagca
    18421 agatccctct gcgcctgtcc gtttattgga actgttaagt gatgccggtt tgcctccggg
    18481 cgttgccaat tgtatccagg gtaataaaac gactgtcgag catttactgg ctcatccgga
    18541 tatagctgcc tttactgcgg tcgcctccac tcctgttgcc gaatacatct ataccactgc
    18601 agcagcctat ggaaagcggg cacatacttt tggcggagct aaaaatcact gtgtggttat
    18661 gcctgatgcc gatttagacc aggcagctaa cgctatcgtc ggagcagcct atggttcggc
    18721 aggagaacgt tgtatggctt tatctgtcgt tgtaacggtt ggtcaacata ccgctgatgc
    18781 cttgatcaat aaaatttccc ccctcattcg agccattcgc gtagacgccg gagatgttga
    18841 gggcactgat atgggtcctc ttgtcagcca ggctcatcga caaagagttt tggccgctat
    18901 tgaaaaaggg gttaatgaag gtgcccgctt gattatcgat ggcagaacct ttcaacatcc
    18961 tcaataccca cagggttttt acctgggacc ctgcttgttt gatgaagtaa ctgaagaaat
    19021 gtctgtctat caaaatgaaa tttttggacc tgtactggtt atcgtgcgag tcaaccattt
    19081 tgaagaggct cttgctttag tcaataaaca tcaatacgga aatggcactg ctattttcac
    19141 tcgggatggc tttacagcac gtgagtatag ccagcgagtt caagcaggcc tggtcgggat
    19201 taatattcca atacccgttc ccattgccaa ccatcctttc ggaggctgga agcgctctgt
    19261 gtttggagat accaacatgc acggagaaga aagtattcat ttctatactc gacgcaaaac
    19321 ggttaccagc aaatggccaa taaccgaatt aaaggatagc agctttgcca tgcccactca
    19381 tgattaatca tgcttattac ggagaaatat atggctaata ttggatttgt gggattgggt
    19441 catatgggtt ttccaatggc cattaatctt ttgaaagccg gtcatagtgt catgggctat
    19501 gatttgcaac aatcagcact tgagcatttt gctgaacaag gaggaactat tgctcataac
    19561 ttgcaggaat tggcaaaagg caaagatgtc attgttacta tgttacaaac cggacagcaa
    19621 gttttacatg tatgccttgg tgtagatggt atattcagtc agttaaatgc tggctcattg
    19681 tacatcgatt gctctacaat tgatgtaaaa agctctcgag aaactcatca aatagcgaaa
    19741 gaaaatcatc ttctggtcgt cgatgctccc gtctctggcg gcgtagcggg ggccactgca
    19801 gccacgttaa cattcatggt tggtggtgaa gccgaggctt ataatgcggc gcatcccatt
    19861 ctctctgcca tgggaaaaaa aatcatccat acaggcggtg caggcagtgg gcaagcagcc
    19921 aaaatttgca ataacatgat attgggtacc acgatgatcg ccatatcaga agcgttcatt
    19981 ctggcgaaag aactagggct gtctgatgga aaattatttg aggtggtaaa caattcatcg
    20041 ggtcaatgtt gggctatgag caaatacgtc cctgtaccag gaatattgga aaatgttcct
    20101 gcaaacaatg attataagcc agggtttgca gcaaacatga tgttgaagga tttgttattg
    20161 agtcaaaata ctgcgaaatc agtacacatt gaaacacccc ttggcgccaa aacaactgaa
    20221 atttatcaac aatttgtcga tcaaggcctt ggtgatatcg atttttcagc cattattaaa
    20281 cacattggca aaatacaaga ggtgtagcat gcttcccgtt catctaaagc accctcattt
    20341 aacagctaca gaagaatatc tatctgaatt ttggtctgaa attgccgcac aaaccattga
    20401 ctggatacaa ccttggagta tcaccctgca gggaggatta cacaaaggcg atgtgaagtg
    20461 gtttcaaggc ggcttactca atgttagcgc taattgtctg gataggcatt taccccataa
    20521 agcaaatcaa acagccatca tttgggaagg tgatgatgaa aaccaaaata aaaccctgac
    20581 ttttgcgcag ctttattctg aagtatgcaa aatgagcaat gtgttaaaaa gcctaaatgt
    20641 tcgcagaggg gatacggtag gcatttacct acccatgatt cctgaagcgg ccattgccat
    20701 gctggcttgt gctcgtatag gagctattca taccgttgtg tttgccgggt tttcggccca
    20761 tgcattgcag cagcgattaa tagcctcttc ctgtaaatgt ttaatcactg cggatgcgtt
    20821 tcaacgcggt ggaaaaacta tccctttaaa gaaacaggct gacgaagcca gcgtggactt
    20881 aaatatcacc aagctggttg ttaaaaattc aaatgcccca acggcactaa ataagaacaa
    20941 agaacattgg tggcatgagc taaaacaaac cgtatcggat caatgcacgc cggaaccaat
    21001 gaacaccgaa gatcccctgt ttattctcta tacttccgga agcacgggac agccgaaagg
    21061 agtggtacat accacaggcg gctatttagt gcaggccgct tatacgcatc aactgatatt
    21121 tgcttgtcag gataatgaag tattttggtg tactgctgat gtcggttgga ttacagggca
    21181 tagttatgtc gtctatggcc ctctctgcaa tggcattacc acattgatgt ttgaaggaat
    21241 acccacgtgg cctgacgcag caagaaactg gcgcatcatt gataagcacc aagtgaatgt
    21301 gttctacaca gctcccacag ccatccgctc cctgatgaga gctggcgatc aatggctaaa
    21361 ctcaagctca agaagttctc ttcgtttact gggttcagtg ggtgagccaa ttaacccgga
    21421 agcatggaat tggtatcacc aaaaagttgg acaagggaaa tgcccgatag tggatacatg
    21481 gtggcaaact gaaaccggag ctattatgat tagtcccaga gccagtgatg aagtgatcaa
    21541 accaggctct gctcgtaaac ctattccggg gatcgtacca ctcctgttaa atgagcaagg
    21601 acatgaaatt aatggcgctg gagaaggcct tttggctatc aaatacccat ggccttctat
    21661 ggcaagaacc attgcaggag atcaccaaag atactgtaac acttatttat ccaacggcta
    21721 ttacatcact ggtgatggag ccaaacgaga tgaagatgga gattattgga ttacaggccg
    21781 aattgatgac gtacttaacg tttccggcca tcgattgggt actgctgaaa ttgaatcagc
    21841 attggtcagc catcctaagg ttgctgaagc tggcgttgta ggtattcctc atgatttaaa
    21901 aggtcaagca atatttgcct atgtcattct gaagcaggga aataagcctg atgccgagct
    21961 ccaaactgaa ttgatggagc gagtcaaaga tcaaatcagt gctatcgcca aaccagatgt
    22021 cattcagttt gcaaatgatt tgccgaaaac ccgttcaggt aaaattatgc gccgaatact
    22081 aagaaaaatt gcttgtaaag aagtgtcgca cattgatgag ctgggtgatt taacaactct
    22141 tgctaaccct cagatcgttg aggaactcat gaaaaatatt ttgaagcggt aaaaagaacc
    22201 gtcgagcttc acaaagttta ttctgatagc aaacaaataa actatgtgaa gcctgacaac
    22261 cagttcaaat aatatcaaat caatttcatc aggcactgac agagagcggt tgcattgaca
    22321 atgaaaaatc tttgacaatt ttttcagact cggtgggtac aggaaataat cgccatctcc
    22381 ccgcgtataa attggctccg cccaaagtac ataaagtgac taaagcactc gctaaatcag
    22441 caaacacttg tttccagcca cgatgtactt ctaaaacagg catgactgca ttaatggcac
    22501 ggacgcaagc ttgatgaaaa tcattgcatt tcacattctt aggcagttga gagtttttga
    22561 agtgctcttc ggcccttaat aaattattgt aaaatgttct cgctatgggt gccgcgcgtt
    22621 tataattttc atcgccaacc gctttggttt cgagcgtttt aaccatactt tcaatagttt
    22681 tcaagtggtc ggaaaattta atttcggcaa gaatattcaa agtttctttt attgcagcga
    22741 tttggtcagt aatacgcttg ctcattacat cagcttgtct gttaatttca caaattttat
    22801 ctgtcagagc tattttgata tcactatgat actcatcaga tagttgaagc tgttcccgcg
    22861 ccttaagtaa atctggtttg ttatccacca aatatcgaac cgattgaatt aaatcctgtt
    22921 ttctggcaat cacttcttca actgtttggc acctgctaaa acttatcgga aattccctga
    22981 tttgtttttc atagcttttt actacttctt cagcatttat tttaatgatc aattgatcag
    23041 ctgtttcatt tatttcttgt tttttcgctt gcagtgctct tactatggat ggttgcaagt
    23101 tattacaatc cagaaccttt tcagaactta acaaagcttg attaggttta accagattat
    23161 caagttgttg caataaatta ttacgctgcc attctactgc agaagtggag cttatatcat
    23221 taaagcgaat tacaaaatta tcaattcttt tttcaacaga atcgataacc ttttgcgcct
    23281 catcaagaag ccgtttttgc aataattcag cccgcaaatt aatcttttca acctgggcat
    23341 aatagaccat ttttattttt ggattggcga tgaattgttc gcccaaaaga tcttccgctt
    23401 tgaccagtgt gtgaagcttt ttgttcaaca gaatacgttg ggattcaata gctactatgg
    23461 tatccgcatc attaaagtcg attgggaaat tttttatttg cctgacatgc tcatctatat
    23521 ccgtttcata cttcctgaga aaatctgaac gtcgattagc tgcggcgtct atcattcgga
    23581 gcttacgttc taaagccctc tggacttccg gatgtccatc aggtaaatcc agtatttgca
    23641 acgcattttg caattcgcca gaatgaacta ttttcttaag ttggcctctg agctcttctg
    23701 cattaagatt aacgtgttct acggttttaa atccttcaaa actaaatgga aaagaattga
    23761 ttcgctgaac aatatctgaa atcactcttt tagcatcgtc gactcgttgt tgccttaata
    23821 cattatcaat ttctggaatt tttatcacag gttgtggctt ggataaggac tcaaaccatg
    23881 atttgaattc gcctgaatct tttaaagcga ttttttttgc gtattcttct aaagatatgc
    23941 caaatagaac attaattttt tgagatgcga agacaaataa cgcttttgcc acttctggat
    24001 taattcggct taatctgaac aaattttcaa agaattcatc cggatcttta aacgttgcgc
    24061 tggcaagaac gacatcaaaa aactcctcat caattggcga tgtgtctttg ctttttaagt
    24121 actcaatcaa taaatctggt aaagtcttta gtgtgagata gttagcaatc gcttttgcaa
    24181 aaagagcttt tggcggaaat aatgcctcta ttgatttttt ggagaaaata ttggctataa
    24241 acaatgctcg taaccctgat gctcttgtta aactagagga tgctccacca aagtaaaagt
    24301 taattaaccc ggattcaatt tcttgtttcg ctttttcagg caggtaagct aactgattga
    24361 ttttttgctg tattgcagac ttcactatta aatggagaaa agcctcgcca ttaaaattta
    24421 tgcctgcttt gggacttaat ttgttttctt cgactgggtt tgataaggct aactctgtca
    24481 aaacctcgcc taataattct tgagatgttt cttcgcgaag aaccagttca agcaaatcca
    24541 ttgcagggat acgggttaaa aataatttta ggaattcttt tttagaacca tccgcattgg
    24601 ctatgcaagc agttaatgtt ttcttttcct ccactgacaa ttttaggaaa agtttttcaa
    24661 gataagggat ttgtttatgc aaactaatgc aagaagaaat aattttgttg tcagttagaa
    24721 gatgcatttc ctccaaagat atcagccttt tctgcagacc agaattagaa aaaatatacc
    24781 tcccctcctc gtttgaaagt gtcaataatt tttttgtcaa actggctcta tggatactgg
    24841 tattaaaaag gcaaaatcgg cagtttcgtt tgttgagatc gtctaatttg taagtttctg
    24901 ttttagaatt atcgtgcgga ttgattaaaa caaaatcata gttcccagaa cctttaggaa
    24961 taattttgtc tattctcaaa gcatgacggc catgaaattt tccaaagcta tcgacttttc
    25021 cataagacat actaatataa acaggctcat caggattcat taatttcaat ttgatgatat
    25081 cgtcaagctt tgaatatgga atgtcttccg cttgaatacc aaagaatttg cctaaaaaag
    25141 cagtggaagt aaaaccggca attctgtccg gtatatcatg agcaacaacg cttgccaaag
    25201 gatcagtatt actccaatct cccgcataat aataggaaac caatcgttcc aaaattttta
    25261 ttgccagcga attacttttt accccgccgt attgattatc aatttccttt agtctttccg
    25321 ggctaatctc aaacacatct tcattgttga gttcatccac gtaatgggtg tacttccctg
    25381 tcattttatt cttttgcaaa ttatctttta gtgcctcatg gcgtttgatt cttacgataa
    25441 ctttcccatc ttccgtttgg gtaaacaacg atttaattaa ttgctcccca tccgccccaa
    25501 gatttaaaat gcaatccaga gatgacaaaa gatagcaact acctccaata ccttgtcgga
    25561 tggtaatagg gccttgagtt gggaacaaag gtgtcattgt ggtcctctta aaatcataac
    25621 gtacagaaag agggcattat aacagcaaaa tattggataa tcattaaaaa aaatggtctg
    25681 taatcaatcg gaaaaccaaa accctaaaag ctaattccac tcataccaac ggtcaagcaa
    25741 ggaaatcaac tcctcaacac catccttttt cacagaagaa aacgcttgca cagaaaccaa
    25801 atgctctgcc agctcataat actgccgaac tttaagtacg gcatttttga cttcactacg
    25861 acttaactta tctgcttttg tcagtaaaat atgcactggg agctctctgt gcaaagccca
    25921 attcactaat atttgatcca aatctttcaa tggatggcgt acatccatca acaaaattaa
    25981 tcctctcaaa cattgccttg cttccagata gtgggctaaa ttcttttgcc attccaattt
    26041 tacttccatt gccaccttgg cataaccata acctggtaaa tcaacaaggc gccgttgctc
    26101 atcaagagaa aagagattga tcagttgagt gcggcctggt gttttgctgg ttcttgccaa
    26161 atttttatta ttagtcagac aatttaaggc actggatttt ccagcgttgg aacggccagc
    26221 aaacgctacc tcatacccgg aatcttcagg taattgattg acacgggctg cactttttaa
    26281 aaatactgct ttagaatata aattgattgg cataagatat cattttagtt ttgggatttt
    26341 gacccaggca gtgtaccatt aattgactaa attattatga gaaatccatg aaaaaattag
    26401 cactcgtatt aatcctgtgc tcttcatcag tgatttttgc ccaggaaaac ccgcaagagg
    26461 ctggacaaaa taagtcaaca gtctgtaccg cctgtcatgg tccgcaaggt attagtacga
    26521 atcccgaatg gcccaatctt gccggccagc atgaaaaata ttttgtgaaa caattgaaag
    26581 atataaaaga aggtaagtcg cgctctgcgc ccactatgac tgcaatagtt gctaatatga
    26641 atgaacagga tatggatgac ttggcagcct attatgctaa aatgcccgtt gctgaaggtt
    26701 caacccctga aaaatattta aaaagaggcg aacaacttta cagaggtggt gatttaaaca
    26761 aacacatcgc ggcctgtata gcctgccatg gtcctaaagg aagtggaaac gctcaagcag
    26821 gctttcccct gctttctggt cagcatgcag cttatactat aatgcaactg caagcattta
    26881 aagacgggaa gcgaacgaat gacttaaatc aaattatgca agatatcagt agtaaaatga
    26941 gcccagaaga tatggaagcc gttgcttatt atattcaagg gttatattga ggaattgact
    27001 atgtttaaaa aattaattgc cctattattt cttatgccaa tgactgcttt ggcaactcaa
    27061 tttattgaag gcaaagatta tcaaaccgtt gccagcgcgc aattgtctac caataaagat
    27121 aaaacacccc tgattaccga attttttagc tatggctgtc catggtgtta taaaattgac
    27181 gccccactaa atgattgggc aaccagaatg ggcaaaggcg cccatcttga gcgcgttcca
    27241 gttgttttta aaccaaactg ggatttgtat gccaaagcct attacacagc aaaaaccctg
    27301 gctatgtccg ataaaatgaa tcccatatta ttcaaagcga ttcaggaaga taaaaatcca
    27361 ctggcaacga aacaatcgat ggttgatttt tttgttgctc atggcgtaga cagagaaatt
    27421 gccaagagcg cttttgaaaa ttcgccaaca atcgatatgc gcgttaacag cggcatgtct
    27481 ttgatggcgc attatcaaat taacgccgta ccagcctttg tcgtcaataa caagtacaaa
    27541 actgacttac aaatggcagg gagcgaagag cgtttatttg aaattttgaa ttacctggta
    27601 agaaaatcag cctaattaac tcaagctata aaggatattc ctcgccacgg taattggcca
    27661 caggccaggt cattttgacc tggctttctt gctaagcccc cttgcccggg ttttccagac
    27721 tcaaaatacc ggtattgaaa tcataagcaa aaatctcggc atatcgcccc cagtcaatca
    27781 ttgttttcaa aacacgatct gcttctttct cgcttaaata atcctccagc ttactcaaaa
    27841 agcgctcttc tgagacgcga tgccccgctt tctcatccag tacccgtctt atataacgag
    27901 ccagagggac tttttccaat aatctttgcg cgaacaattg cttacgctct tgcaaatcag
    27961 cttctgaaaa ttgttttcct aattcactta actgaatatc tcccgcagac accttggcaa
    28021 aaccaagtat ctccagagtt tcaagaattg ggaacagatc atcaatattc atcatgagct
    28081 cgtctgccag ctcaggtaaa tcaatacgtt cttcaaagga cttcatagtt tctatcagac
    28141 cggataattc agagggctcg acatcgggta agcgatagcc taaacctatt tgacgctccc
    28201 tttgcgctcg cttggctttt tctttgggcc cagtagtcat taaagtataa atcttgtcaa
    28261 ccaaggcaag gtattccggg ctttccggat cacggggttg gggaagagtc actggtaatt
    28321 cagcacgaat atagccggga tcattaccaa aaatcactat cctgtcagcc aaagtcgcag
    28381 cttcttctat attgtgtgtt actaataaaa taccattggt attcgttttc ttttctttcc
    28441 ataactccaa taaatctgat ttgaggtttt ctgcagtaag tacatcaagc gcggaaaagg
    28501 gttcatccat taacaacaca tccggattaa taaccaaagc gcgagcaaaa ccaacccgtt
    28561 gtcgcatccc accagataac tccttgggaa aagccgattc gaaaccatcc aaacctataa
    28621 tatctatcgc ttcaatagcc ctgtgccttc tttcctcgcg gctgattcct tgtgcttcca
    28681 aaccaagctc cacattttcc aggactgtaa gccaaggcat taaagcaaac gactgaaata
    28741 ccatagcaat accttctacc ggcctggtta caggtttacc gcggtaagtc actgttccac
    28801 tggaaggagc gataagacca gcaataatcc tgagtaaagt ggatttccct gaaccagatt
    28861 tgcctaacaa agcaactatt tcgccttcct gtaatttgaa attaacatct tcaagtacaa
    28921 gaaggtgctg tgaaggtgct tttttaaaag atttgcttaa attttctatg ttaataattg
    28981 tttccggcat aggagtctca attaaaatta aatcgttctt cggctaatcg ataaagcggg
    29041 cgccaaataa gatggttgaa agctaataca tagacacaca tcattgctgt tcctaacgca
    29101 atttgcggga agtctcccgc tgtcgtacta gcctgaatat actcccccag acctgtggcc
    29161 ttaagagtaa tatttcccca gctcacgtat tcagcgacga tactggcatt ccatgcaccg
    29221 cctgctgctg taatagctcc ggtaatgtaa aaaggaaaaa tacctggcaa agccaatctt
    29281 ttccaccata tccaaccctt taacccaaaa ttatcagccg ccagataaag atcgcgcggt
    29341 atactcgagg ctcctgcgat cacattaaat aaaatatacc actgtgtgcc caggatcatg
    29401 agcggagtta cccaaatttc cacgctcaaa ttaaatttga cgatagcaat tacaaataaa
    29461 ggataaaaca ggttcgctgg aaacgctgcc acaaattgaa taatcggttg tattttttga
    29521 gccagccttg gccttaatcc tatccacacg ccaacaggaa tccatagcat agagcttagc
    29581 aaaattaata taatgacccg agatcctgtt gctgcgccca ataaaaagac atgaaatata
    29641 tcactcacct tcaattcagc gagaataaat ttcaacaaaa accacccgcc agtaataacg
    29701 gctatcaaaa ccaacgctgt ccacaatcgg tctaaacgct tttgcctttt aaaatcaatt
    29761 tccttaacag ccttcacctc accaatcctc agccaacgag catttacaaa actattggta
    29821 aagaccgcga gccactccgt cactctcttc atcaaacgac tactgcgtat caagtcaatt
    29881 aaccaggatt gatattctga ctcatcggga gactgttcca ttttaaattt ttcagaccag
    29941 gcaataagtg gcctgaaaag tatttgatca tacaaaaaaa taacgataac catggtcaga
    30001 atggcatatc ccacagcatg caaatccctc tgggctatcg ccaatgcgat ataagaacct
    30061 acaccgggta atctgatatt ttggtgcgcc accgaaatag cttctgacaa aaccacaaaa
    30121 aaccagcttg ccgacattga aaccatcata ttccataaca gtccagacat ggaaaaagga
    30181 acttctacct tccaaaagcg ctgccaggct gacaacctga acatggcaga gacttcaatc
    30241 aaatcatgag gaactgtttt taaagattga taaaatccaa aagtcatatt ccacacttgg
    30301 gcgctaaaaa tagcaaaaat tgaggcgcat tctggaccta acaagctatt gggaaataaa
    30361 tgtataaacc cggtgacagt aatagataaa aaactcagaa caggaatcga ttgtaaaata
    30421 tcaatcgccg gtataacaat ttgctcagcc ctgcgatttt tggcagctaa agcacctaca
    30481 ataaaagtaa acagaattga aaaaatcaat gcgataaaca tgcgtaaaac tgttcgtaac
    30541 gcataaaagg gaagattgga aggttccaag gaaatgggaa tttgatcccc taattgatac
    30601 ggggtagcca tctgtgaacc ggcccaaccc aggaaaaata acacagaaaa agtcaatata
    30661 agcaatagca aatcccatcg attaataaat cgactgaatt tatcaggatt agcaaaataa
    30721 aaccgactat tgcccactat accctctctt aaaattgacg ttacaagttt cctttaatct
    30781 aatccttaaa tctaaaaaat atttatccat tcctgaatca ggatttacga aaaaccccaa
    30841 ggtcaaggca aaaaagtttt taatgaggga gtttagataa actaaacgac cgaattaaaa
    30901 acttttttaa caaagaaatt ggggtttttc ggaagtcctg tgaatataaa ataccataaa
    30961 tacaacgtca tcgataccag acaaaccaac acattcaacc gtattcacaa ataattttga
    31021 ttaaattttg aactttttcg cgattcatgt gtctaatata gtgagcattc tcccccgagt
    31081 gctctacccc gctttccccc tctttatgcg gggtagtatt cggattgcac caaatccgga
    31141 tatataattc tccccgggat cttagccggg gatttttttg taatgaaaaa atgactaaac
    31201 tggcagtatt gagataatcg atgagaattt attatgaaca aaacaatcac aattgccttg
    31261 agtttacttc taagtattgc ctcaaaacta acttatgctg ggccagatag agcacaattg
    31321 gcagtttggg ctaatgaggc gattattgcc acttacactt ttgattataa aaattacatg
    31381 caacaacaaa aggaaatagc caaatatttt tcagctgatg gctggatagc ctatagcaaa
    31441 gcgcttaatc aatcaaaact gcctgaagta gtacaaaaaa atgcctattt cgtcaatgct
    31501 gttgccacag aaccacccaa gctgatcacc ctggatccga cacactggca agctatcatg
    31561 cccatactgg tcgtatataa aaacccccaa tacgagcaaa aacaaaattt aaaagttgta
    31621 ttagggttta ccgtagcatc tcccggacaa ggtgtaagag gtttcagcgt aaccagcctg
    31681 caatccaccc ccatcagccc gccatgccaa tgtaaaattg aagagacgcc tgggaatact
    31741 aaacaaggag acgccaaaca ataataccaa tatgcagcaa aattaatgag ctgattagaa
    31801 ttaaaataaa agttagtttt ttaggtatgg taacatctaa agcagattgt tcaggacgat
    31861 tgggattata gtagacgtca atttctgagt tatctctgta agctattgcc actttatatg
    31921 caatacttcg ggaatattta ctgttgggtg tattaaatgt tgtatccaaa aacaaatatt
    31981 cccctgtcaa atccttctca taaacttcat agatatattc tattctaggc caaacactat
    32041 gccctactct tgtccactca cagcgcgtga catgcccctt cgcttttaac caggatcttg
    32101 cttcaaccaa atctcttctt tttttccaaa aataccaaaa aagaattaaa agaaaacata
    32161 gccatcctaa atcaaggatc catctccaaa ttatcggcca caccatattc tttcccataa
    32221 atttatatta tatgctattt ccagggagag gatcatgcaa aaaaatcaaa ttggaaacct
    32281 cgcaaaatta atcccaacag gtataatcac atccaataag tgataaaaaa aggaaatgca
    32341 atgactgcta aaactcctct tcacactacg cacttagcat gtggtgccaa aatggtggat
    32401 ttccatggtt gggatatgcc tcttcattat ggatctcagt taaacgaaca tcatgctgtc
    32461 agaaacgatg ctggcatgtt tgatgtctca catatgacca tcgttgatat tttaggcgcc
    32521 ggtggccgtc aatttctgcg caaactgcta accaacgatg tcgatcaaat tactcataat
    32581 ggaaaagccc tatacagctg tatgtgtaat gaacacggcg gaattataga tgacctgatt
    32641 gtatatcaac gcgcttccga taattaccga gtggtactta attcggcaac caggcaaaat
    32701 gatgtggcct ggattcgcgc aaaaagtgaa ggatttgctg ttggcttaca agaaaggcgc
    32761 gaattatcaa tgctcgctgt acaaggtcca aatgccatag cgaaaacatt gagtattctt
    32821 gcacccgccc atgtagatgc cgtttcgact cttacctctt tcgaatgcgt tgatgtggat
    32881 cactggtttt ttgctcgcac cggctatacg ggggaagatg gccttgaaat cattgtccct
    32941 aatgaatttg ttacccaact ctggaatgat ctcctgcatg ctggagtaac gccatgtgga
    33001 ttaggggcca gagataccct gagattagag gcaggaatgc ttctttacgg ccaggatatg
    33061 gatgaaacaa caaccccact ggaatctggt ttggcctgga cagtaaagtg ggagccggaa
    33121 gatagaggat ttatcggaat gggcgctttg gtttctcaaa agcaacaagg aattaaacgt
    33181 aaaatggttg gtttaacctt gttggacaaa ggcattatgc gtcatggcca aaaggttatt
    33241 attgaaggct gccctgatgg aattatcaca agcggcagct attctcctac cctgcagcaa
    33301 tctatagctt tggcacgagt tcccatggaa acaggggaac aagtacttgt tgatatacgc
    33361 ggaaagttaa tccctgcaaa agtagggaag cctcgcttta tcaaacaagg aaaacctgtt
    33421 taaattttag taatattaat attaaggata taaaaaatga atgatttgaa attcacaaca
    33481 acccatgaat ggctgagaga agatgaggaa gaggtcacag taggaattac agatcatgcg
    33541 caagaattat tgggggatat ggtatttgta gaactacccg aaataggtga tgaagtgagt
    33601 gcaggccaag aattaggcgt ggtggagtca gtgaaagcag cttctgattt ttatgctccc
    33661 attagtggtg ttgtaacggc ggttaacgaa gccgttggta aaaaccctgc cctggtaaac
    33721 cacgatccct accatgaagg ctggctcgtg aagctaaagc ccagccatcc tgatgaaatc
    33781 aaaagcctgt taagtgatga gcaatatcaa aatgagatag ctgaggaaaa ttaatcatgc
    33841 cttatattcc acacacgccc gatgatacca aagagatgct agaggcaatt ggtgctcaag
    33901 acattcagga tttatttgat gaaataccag cttctttgca atatgcagga tttcaaaata
    33961 tccctgctgg cattaacgaa atggaaatgt tgaaagaagc ccagaatcaa gcccaaaaga
    34021 atcgcaacgg tatatgtttt attggtgctg gatgttatga gcatcatatt ccagcagccg
    34081 tgtgggatat tgcatctcgc ggtgaatttt taactgccta cacaccctat caagctgagg
    34141 ccagccaggg aactttgcaa ttattgtatg aatatcaaac catgatctgt gagttgaccg
    34201 gcatggaagt atccaatgcg tcaatgtatg acggagcaac tgcgttagct gaagcagtac
    34261 tcatggcagt ccgccttaat aaacacagta aaaccaacag agtactgatt gcaggcacag
    34321 ttcatccttt ttatcgcgaa accattgaaa cgatagtacg taatcagcat attgaagtca
    34381 tcaccctccc ttttgatgaa cagcaaggaa tcactaatct tggctctctc aatcaataca
    34441 ccggagaaga tattacagct ttggtcatag cccaaccgaa tttctttggt tgcctcgaac
    34501 aagtcgataa aatgacttcc tgggcacatc ataacaaaac aatcagtgta gcttgtgtta
    34561 acccgacttc attggcttta ttaaaaccac ccggctcatg gggagaacat ggggtagaca
    34621 tcgtatgcgg tgaaggacaa cctttaggct cacctatggc atcaggaggc ccttattttg
    34681 gttttctgag cacccgtatg gcccatgtca gacaaatgcc cggaagaata attggccgca
    34741 cggtagacaa ggatggaaaa accggtttta gtttaactct ccaggcaaga gaacagcata
    34801 ttcggcgtgc taaagccact tcaaacatat gcaccaacca gggtttactt gtaacagcag
    34861 caactatcta tatgagtctt ttaggaccgg aaggtctaag ccaagtggca actcaatgcc
    34921 atcaaaatac tcatgaattg attactgcct taacacaaat cgagggggta gaactggcat
    34981 tcaaagctcc gtttttccat gaagcattga ttaaactaaa ccaaccagtt cagtccgtat
    35041 tgcaacaact agccgacgct ggaattgctg gaggttacgc accggaacaa cactaccctc
    35101 agctagccaa tacgctgtta gtttgtgcga cagaggtgcg tactgcagag gatatcgcga
    35161 aatatgcaaa aacattaaaa accataatgt ccaagcgagg tgcctgatgt ttattgtgca
    35221 attaacctat ttagttccca tcaatgaagt aaacaaatat ctgcaggcac acagggagtt
    35281 tctagattac cactacaaac aagggttatt ggttgcttct ggccccatga aacctccaac
    35341 cggcgggatt attatagcag cgacaaatga cagggcacat ttagagtcag tttttaaaca
    35401 agacccttat tatttagcag aaattgctga gtatcaattt atcgagttta ctccagtaaa
    35461 acacaggaat gaactcaagg aacttattca aaaaacggaa ggcaaattat gttgattttt
    35521 gaattatcta aaactggtcg ccaggcaaaa gcccaaatac ccagagcagt aagcaaaaac
    35581 tattcaatac ccgaagaatt tcagcgaaag tcgcccccaa gattgccggc ctgctccgaa
    35641 ttgcaagtgg taagacactt tacctgcctt tcccaaaaga atttttccat agatactaat
    35701 ttttatcctt tgggctcatg taccatgaaa tacaatcccc ggggtgttca taaagcagct
    35761 tcgcttcccg gttttataaa tcgccatccg ttagctatgg acaatgaaag ccagggattt
    35821 ctggaaactc tttataaatt acaaaattat atttctgaaa ttacggggat gcccggtgtt
    35881 tcactaactc caatggcagg ttcacaggga gaatttgccg gagtcgccat gattaaagcc
    35941 tatcaccagt ctcgtggcga caccgcccga gatgaaattc tcattccaga tgcggcgcat
    36001 ggaacaaacc ctgcctctgc ggtaatgtgt ggcttcaaag tagtagaaat agctaccgct
    36061 ccggacggtg acattgatct tgacgaatta aaaagaaaag taggtcccag gactgctgga
    36121 attatgctaa ctaatccatc cactttggga ttatttatgc gtcagataaa agaaatagcc
    36181 agtcttgtgc accaagcagg aggattatta tactacgatg gggctaatct caatgctatt
    36241 ttaggtaaag taagacctgg tgatatgggt tttgatgtca tgcatcttaa tttacataaa
    36301 acatttgcta cacctcacgg gggtggcggt cctggcgctg gccctgttgc tgttggcaaa
    36361 cgccttattc cttacatgcc cttacctgtt gtgaaaaaaa ccgactccgg atatcactgg
    36421 gcaactcgcc aggattatcc acaaagcata ggaagattat catgttttat gggtaatgcc
    36481 ggcattttat tacgtgctta tttttatatg cttgtccttg gtaaagaagg cctattgcgc
    36541 gtatcagagt tcgcaacact taatgccaat tatttactta aagaattgac taaagtgggc
    36601 tatacagcag cctatcctga caggcgtgca tcgcatgaat ttattcttac tttaaattcc
    36661 gaaaagaaaa attatgacgt gactgccatg gattttgcaa aaaggttatt ggactatgga
    36721 gttcatgccc ccactactta tttcccttta ctagtaccgg aatgcttgtt gattgaaccg
    36781 cccgaaacag aaagcaaaga ggaattggat gcttttgtgg ccgtgatgaa aatcattcgc
    36841 gaagaagcta gcaaacaacc tgatatactc aaagctgcgc cccacacttt accagtcaaa
    36901 agactggatg atgtgaaagc ggctcgcgaa ctggatttaa attattttgc aactcacgag
    36961 taacctgtac aatagatttt tccaatttta gcgcagcagc tttcttttta tgacagttgc
    37021 tgcgttttat gacggccaat cttttctcgc caaaaatctg atgctctttt ataacaattc
    37081 acaagcttcc gcattccaag actctcaagc atcgcattat taactttaca aaataatgtt
    37141 ataatctcat tccaatggat caaataaatg gttgtagaat tggatgagac accagtcaga
    37201 acgttgctag cgcgtcaggg aatctatgat aagaatagcg caatcgttgc ctatgaactc
    37261 ttgtatcgta atagtgatgc agaaaactca cacgtagata acctaaacca gtcgtcaggt
    37321 gaggcagcta cctcctctgt tctagtacag ttatttgcca atcttgatgt aaataccata
    37381 ataggtaata aacaagcttt tattaatttc actcatagcc atcttgtaca aaaaatccca
    37441 atgttgcttc ctaaaaatag aatagtcatt gaagttcttg aaacggtggc gatcgaccag
    37501 ccattgctgc tcaatttaat ggaattaaag aagcagggat atcaaattgc cctggatgat
    37561 tttgtcttca ggaatgaatt ggctcctctg gttgatatgg ccgacattat taaaatcgat
    37621 gtgcttcatc ttgaccagca gcaaatcgca gaacaattat taccgctgaa atcttttaga
    37681 ggtaagttat tggcagaaaa aattgaggac aaacaacaat tcaatcattg cgtcaatctt
    37741 ggatttgatt tttttcaagg tttttttcta aacaaaccgg attccttaac aggacaaatc
    37801 attactgaaa ataaaataca gcttttaaga ttattaacag aaatcaacaa tgaagaggta
    37861 ccaatccaac gcattgaaga aattatctta caaattccca aacttagcta tcgtatcttg
    37921 cgtttggcaa attctgcctc tttgtacatg agcaaaaaaa tagaatcatt gatggatgcc
    37981 atttctcaat tgggattaat gcaaatacgc aactggttaa atctgttact cttggcaagt
    38041 ctcgatgatg tcgcacctga tttgttggag cgaacattaa ttcgcgccaa aatgtgtgaa
    38101 tccttagcaa aatcaatgga ttatcctaac tctcatcaag cttataccgt aggcatactt
    38161 tctactttag atggtatttt aaatgagcct atgccttcgc tattagcaaa aattcggtta
    38221 agtgaaacac tcaatgaagc gctactgaac tacaaagggg atttaggcaa aatcctgaaa
    38281 tttgctatag attatgaaca agcaaatttt aatcaattag aacgcattcc tgtaaaaagc
    38341 gaaacgctct ctcaatctta tcttaaggga atagaatacg ccaatcatgt gatagacatt
    38401 attaataaat aattgtcgtc cctattagta ttcattctgt attcaacctg ttttacaaaa
    38461 gagagtcttt tggaaattgt ccgtatcaga taagacaaaa aggattttca tcaggactta
    38521 cgacaaatcc caatctcttt gttaaaaaaa gtttttaatt cggtcatcta gtttatctaa
    38581 actccctcat taaaaacatt ttttgcctcg accttggggt ttttcgtaag tcctgttcat
    38641 gtgacgaatt tgccactaaa ttttatttaa aatcacaaag accttaaatt gtccttatag
    38701 atcaaataat agcttgatgt ttcctattgt ttatttataa ttcatggaat gttaaattta
    38761 ttctcttatt tcaaattatg atcatacgtg aactgtttaa ttggatacac aatgatagcg
    38821 caccccttca tctaagtgat caaacgatcg aacgtgatct tattgaacaa gaggaatcac
    38881 aagccaaaca aactcatcgt gtgcttctgg gtaatgtccg tcttttaaaa tatagtggtt
    38941 catccaatac agaggcgatt aaagaattag agcagcattg tctttttatg gattatctcc
    39001 agttgtataa acaagagttt gttaaggatg ggaaaaacac tgttttttta attgcattaa
    39061 gaaacctgtt atctcactct catgaagagc aacttcgtct catgcctaaa attaatgagt
    39121 tattccaaat attattacga gacaataaag aaagtgctct atctttttat gataaaaata
    39181 aggaattatt caggcactgt acagaaattc aagaaagggt aacatttgag ctcttccagc
    39241 aaaaaataga ggctgacagt aaatcagtaa tgactcagct agactatttc aatgaacatt
    39301 tagcctacca ggaaaatccc ttaggaatca ttgcgctatg ccgaaattgg attggtgaaa
    39361 cagaaaaatt cactgcttta atactctggt tgctagaacg caaagtaagc gttgaaaaaa
    39421 ttcttcttac taatctgctg caggattttc ttagatatca tttattcact ttgcattcca
    39481 gggataatga agtttctcgc ttatactccc tgctcggcca tttccctgaa gctcaggaac
    39541 tcgttatggc agcccaaaag ataagctgtg gagaattaat gttccagcaa tactctcttg
    39601 acggcacttt tcggggtaaa aatcttcctg ttgtttcacc agaaatcccc cctttgcaat
    39661 tttccttaag caaagacaat tttatcgcat tacaccgaac ttttggcccg gcttttttaa
    39721 ctgcaggaat tgctactgca acaaaccatg acgaagtagc ttggctggat atgttaaggc
    39781 atactctgaa tcagccagag acactcaaat tactgcccga tattatcaat attattgcca
    39841 gagaatattc accgaaagtc ttaaaaaccc ttgccgaact cattgcggag tccactgccc
    39901 atcaacttct tactcttaac caaagctgtg ttttccattt actacaacat aaaccaagat
    39961 tgcttcacga tattacagaa gaaaatgtta ttgggtatat caatcatctg gttcgactgg
    40021 atactcatga tcaggaaatc atttatcagt taatggcttt gtttagggtg ttattgaaga
    40081 aaaaccatcc ggcaacgaaa gcagtattcg aagcaattct cgataatctt gtaaatcatc
    40141 cgcaactgct ggaggatgaa gaatttttaa cacagttaaa aaaatatcca gattgtgagc
    40201 tccttttaga cgaacgttgt gaaaatatct taaaacagct taatttttgc attgctgaac
    40261 aaacatcagg actactcttt ggcaaacata actacttcat catagaagat gtttggcttg
    40321 gagccttaag aaaatttgca gtactccagc aaatcaaccc acagatgaag tttagctttg
    40381 ggcataagta tgcccttcaa gcaagaattg ccgaagttgt ctttatccat cagggagact
    40441 tgtttgattt agataccttt atcgacgcgt tggatttgcc cctcgtcacc tcatcaggag
    40501 aaatcagtcc ttacgaacgg gctcttatcg aaattcttgc cacgatagat aatgagctca
    40561 tcagaaaaca aatcattcaa aagctggaaa caaccccttt caatagactt gactggcatg
    40621 aaagggaata tgggaatcaa actgttttca ttaaagcagc aaaaaagggt aatttaggct
    40681 taatcaattt gcttgaagac aagatggaac cttctgtgct taacaaagcg ctaagagcag
    40741 cagccaaaaa ctaccaatgg gaaacattgg atcatctttg tagccttcct ggtgttgagt
    40801 taaggcaaga tgaaatagat gatcttgtgg tctatctggc agaacatggg cgaatagaaa
    40861 gtgtaaaaaa actcttgaaa ttatatgatt acaagccatc cacagaatta attggcacga
    40921 ttcttaaaaa agcgatagac aatgataatt tacaagtcgt catgtatttc tgtaaactgc
    40981 cagtggaatc acccaaacaa tcaatgcttg atcgcctatt taaattggca atccaattac
    41041 agcattggga cattgttgag tatcttgcca actcaaagca ttattctcca tcccaaacga
    41101 cgcttgaaaa ggcttttcaa caaactgcgc tggctatgca acatgaagct gtagaaattc
    41161 ttggcaatgt ggaaaagaat cccgtacgtg caatagttat tgagcgggct ttactgaaag
    41221 ccagtaaact ggggcataca aaggttgttc aatcgatttg tgccttacct tccgagtcat
    41281 taaccaaaca agctattgaa gacgctctag aacaagcagc agccgaagga catttggaca
    41341 ttgtctcctg cctctgtgag ccaggaacca caacgctaag gcaaccaggg atcaattcag
    41401 gaatgaaaat tgcggtccag acaggcaaat tatctgtggt taattatttc tgctcgatga
    41461 cagggagcaa taaaccaact ccccgcttaa ttgatcagac attagtgatg gcggctaaaa
    41521 agggacaaac agccattttt atggctattc attcaaaccg ccagactcct ccaggaaaac
    41581 atgctattga gcaatccttt caacttgcta tcactgcagg gaaattacaa attttagact
    41641 atttatgtcg tcatgaaagt tatggcctca atcaaagcag gatagatcaa gcattgattt
    41701 cagcagtcaa atccaaacaa ctgggaattg ttagctatct ttgtgaatct ctggaaatta
    41761 cacccagtcg aaaagcacta aaaattgctg tttctaaagc aatctccagt gaccaaactg
    41821 aattagctga ttacttgcga agccgatcca gtggcaaatc aaaaccctta gatacaccca
    41881 ctgacgagat ggcttcccct ctcgaaattg gtaaacaatt agcgactaat gggcttttta
    41941 aatataaaag aaaagacgcc aaggagcctc cactgctttt aaatcctagt ctttaaaact
    42001 attggtcagt agaggaaact ctctttcttt aattttattt cgtttaacct tttgtataac
    42061 cgattatttt tgcccgaaat gatatattat tgaccgacat ccacaaacaa taaccatatt
    42121 ggcttgggag tcactaagcc atgtgcactg ccgttcaatt tgtctgactc aatcactggt
    42181 tataaagaga aaatgacgtc atgggtaaac caggtcaggc aattgctcag ccaattgcaa
    42241 gtataatttt gtttaaaacc gtccagaaat ttgggcagtt tgcaccaagt atccctaatc
    42301 atcatacttg gacatccagc tcgaacaaag tcagagaatc catctcacca tcgtaaattt
    42361 tcttaaacca agctggtatt tgttttgacg attcagaaat atatcgtgac ctctctttgc
    42421 actgttctgg aagataactg ttaaataatt tttctaaagc gcggttatca tcaattaaca
    42481 gatttatttg gttaaccaga taataagttt ctcggggttt aattttttgt cggtgaccat
    42541 acttatcaag ccatttcaat gaagccaaac caataaataa agaccatgca caaaataagc
    42601 gatacgggcg tccttcaata attgggatgc tctttacata agccagtgaa tggtgtgcat
    42661 gaataaccaa actctcgcgc aagctattct ctgaagaaat aaaataacgc ccacttgttt
    42721 catcatccac tctatctttc aagagattga ttttttgtaa aaagaaacca aagtgaaagg
    42781 cttgatttaa cagactggct gtccacttaa aattagatag taaatcagta aatatgtgtg
    42841 acaataattt gccaactaat cctgcaacaa aaaaacagta ttgattagtg gtaactaatg
    42901 aaggaaatac gattttgcct tccatatgat aatgattaag gaaataatgc attccatcca
    42961 ctacttgcaa aattgttttt atcacagatt gcttgatgga ttcaggtaaa ttatcttttt
    43021 cttccaacaa aagagggacg gcacatagaa gttgtttctc ccctaatgga agctgcgaag
    43081 gaaagctaga aagccatttt gtgaattgat cgtttgccgg tgtttgaact aaaaatgatt
    43141 taaaagcagc aaatgaatca ctttgtgttt gaagatcttg ccatttggca tcttcaatac
    43201 tgtctgcaac acgcaaaagt aaataactca acgcaaccca ttcttttgct ggataagtta
    43261 actggcttat acaaaaacta aaacttctgc ttacattttc tagatgttgg taataaaaag
    43321 aaaacgatcg cataaccatc agccaagttg atgttcgctt ttcgataacg cctgttttat
    43381 tctctcgtaa ttttcttcca ctgtttttga caactcatca tatgaaatat aatttttcca
    43441 tacatgcatt aaagaaaata aatacagaaa cccaaactcc aggtcgtttt ccaataatgt
    43501 attactgtac ttgataaagc tatctaaatt tgaaaagggt tttgacagtg gctttatcct
    43561 ggattgctcc atgtcttgaa acatttgatc aaaagcctcc tgcatataac gcgggaacgg
    43621 gatattgcca tcaaaaactc ggtgatcaac actcatgcct acaggcaaaa catcttgcac
    43681 ctcaaatgtg ttatttgttt tattccagac ttgttttctt tcgatttctg tcagagttat
    43741 tttaaacgtt tcatttggaa ataagggtga aaccgctgct tgatatcccc aatgaccaat
    43801 attgcttaaa gaaatagcag gtctggcaaa taagaaatca cggtacactc gctcgtgccg
    43861 tggagttagc aagcgattga ctacctcgat taaataggga tgctcttttt gtaatgattg
    43921 tgttttttca taacaatact tcatgatgcg catgtcatgc tgaatgtgtt gcgctaattc
    43981 agtcatagtc atctcatggc agtttttaaa ctcaatcgca cctaattgat cactacctgg
    44041 aatctttacc gcaagcgcta cgtaactatt gtgcgagtgg tacagtttat gattgaaaat
    44101 ataatttctc gtctgcggat tatcaaagca agctttactc aatgcttgta gcatgaggca
    44161 agttattgtt tccggtttaa atttcttttc aaaaaaacaa acaggagtaa catttatatt
    44221 aaaaatagca gactcagttg gtaattcggg gtcattccaa attgctgaaa gtaatttacg
    44281 aatattggtc ggttcaatgg ctttgtcttt ttcaaaatca tgcgataaat tcttcatcaa
    44341 taaaggcatg gtatccataa acaattgcca atgggctgaa ggcgttaagc caattttttt
    44401 aagcatccaa tggtgtttat tattgatatt attgagcagt ttcagtgctc cctccttgcc
    44461 taatagaata ccaagggtag tcaaatattg ctcatgcgca aatacggtat ttatcagctc
    44521 atcttcaaaa attgctaatt ttttccttaa atagtcttta tttggcaacc caatctgacg
    44581 atataaatcg tactcgtcca tatgccggct ttcatcttca aggactgttt caaaaatagt
    44641 tactgcgatg tttttctctt tcattgcaat gcataattct tctacccatc cttctccaac
    44701 caaattgacc aaggtgatag aagtggccag atcctcttcg ccttcaagag aagaaataaa
    44761 atgattgata ctcttttgat gaccaagtgg taatgcgtaa ggagcggaca actgaaacgc
    44821 aacttttgca aaaacagtgg catggaaaat ctcgtcggta atttgttgac gcatttgttg
    44881 atacaaatct gttccacgga gtttctctag agattttata agccctctta ggccaattgt
    44941 ttctaattgc gcaaacaagg aaaataaatg aatatagata agcttgtcat gctcaagttg
    45001 aaaaggaatt tcgttgtaaa atatcttgtc cattcggctt ttgatggttt ccttttcctc
    45061 gtcattcaat acagaccaag cattatttaa agaccgctcc gcagcccaag ttggttttaa
    45121 caaatcgcct aactgaatca taaattaacc ccaatccatt tgttatattg caaacgccta
    45181 cactcttccg gagcacatac gaatatttaa gggcaagtgt actattgaaa gcgtttttgt
    45241 ggatattgtc atatactgat tgtaattgct actggatccc agcctgaaaa taaccataga
    45301 taaaaaatgc gatgtccatc agataaaaaa agacttctta aaattatctt atcgatagcg
    45361 ataaaccccc tttgctcaat gagttattca caaatctcga gagtctgaga tgactggttt
    45421 tcggctcact ccgacttctc aacagggtag acaaagtacg acctgatatc tcatacaaac
    45481 caaagtacgt tagctgattg acgagtcatt taaaatcaaa tctctatagt aaaataagca
    45541 tcccggaact gtttgcaatg cagcaatata acaaaaggga ctgattagag agaggaacta
    45601 ttatctcaat ggaaaataat tgattttaat agcaaaaata tctttgctat
//
LOCUS       DACVWI010000004        42666 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.004, whole genome shotgun sequence.
ACCESSION   DACVWI010000004 DACVWI010000000
VERSION     DACVWI010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 42666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42666
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.004"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            50..2086
                     /locus_tag="JBH85_00685"
     CDS             50..2086
                     /locus_tag="JBH85_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HAU0944707.1"
                     /translation="MKFKIATCIVTMLSSFIVFSSNSNFSDNNTNDLLHLDWRDTSVS
                     PAVDFYTYANGNWKKNNPIPADYASWGSFYVVNEKVQNIIHQMLINASKNTHAKPGSI
                     EQKVGDFYFSGMDVDSIDKSGITPLKPEFTKIEEIKNLKDLQAEIAHLHKIGVGPLFN
                     FGSMQDFKDSTSMIGAVMQGGLGLPDRDYYLKKEAKFKQVREAYVNHLTKMFGLLGDS
                     PEMAAKEAKIVMDIETQLAKASMSQVEQRDPHAIYHMMTITELDKLTPNFSWSQYLSA
                     RGQGKIKKINFAMPDFFKAMNELLQSVSLDEWKIYLRWHLIDAFAPYLSKPFVDQNFK
                     MVSALTGTQKLLPRWKRVVNTENGALGFAIGELYVEKYFSPESKQKVLDILKNIRAVL
                     QEDIKTLSWMSPKTRDAALKKLDLMEERVGYPTKWWDYSSLKIDRGPYVLNVIRANEF
                     LINRDLDKIGKPVDRSEWAMTPQTINAYYDPSMNNLNIPAGILQSPFFDPKAPTAINY
                     GAIGYVIGHEMTHGFDDQGAQFDGYGNLKNWWAPNDLSKFKNATQCIADQFSKYVVDG
                     DLHVQGQLVVGEATADLGGMILAYKAFQRSKEYKNAKTIEGITPDQQFFLGTAHVWAM
                     NVRPEQLRNQVTTDPHPPAVYRVNGSLANMPQFQEAFNIPNGSPMISKNRCIIW"
     gene            2225..3091
                     /locus_tag="JBH85_00690"
     CDS             2225..3091
                     /locus_tag="JBH85_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HAU0944708.1"
                     /translation="MREAVMCRFVAYLGRPTLLENVLVRPKNSIIMQSLHARETKYRT
                     NGDGFGLGWYSPEVSSDPALFTSVYPAWNDRNLLHLTAKIQSPCFFAHVRSASAGGVT
                     NYNCHPFIYGDWMLMHNGEINDFIDVKRHIRHLLDDDIYHWVKGQTDSEHLFGLFLQL
                     AKGRDITQLSVAADVLQETINKILEVIGQFGHSGPSYFNICLTNGKKIIATRYCSHEK
                     KKPLTLHYLIGYVLSTQGLWIKEEGNPAYVVVSSERLNDLDEGWEDVPPQHMILIDEN
                     KNIQLRPLQTLG"
     gene            3206..3622
                     /locus_tag="JBH85_00695"
     CDS             3206..3622
                     /locus_tag="JBH85_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944709.1"
                     /translation="MSFSLSELLHYKNEKIVTHFCYSHPEYSIQEGLFLFEDLLAWMW
                     LNKQRRLRGKKTYLFGPLLILDEMWHSFILHTRDYIDFSMKYFGEYFHHDVEPVGFEH
                     VLDEEELADYLQDCFQYLNKEWVERRFSIAFAEMDD"
     gene            complement(3678..4481)
                     /locus_tag="JBH85_00700"
     CDS             complement(3678..4481)
                     /locus_tag="JBH85_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0944710.1"
                     /translation="MIMLKQIVLTGLVIIGIVITLMYLFQRHLIYFPNRHTPKLEDYN
                     ASDMKVVSLRTKDNLHLKSWYKPASKHRPTILYLHGNAGHIGYRMPLVREFIDAGLGV
                     FLLEYRGYGGNPGKPGEKGLYEDGETAIEFLIQHGVPSKRVILYGESIGTGVATHLAT
                     KYPVCAVILQSPFTSLTRLAQYHYPLNFLKPWDQYNSLARMKKINAPILVLHGKLDQI
                     VPYQEGLNVFNEANEPKKMVSFDDKEHNDLWSADNFSREIIQFALNQCS"
     gene            complement(4776..6080)
                     /gene="lem28"
                     /locus_tag="JBH85_00705"
     CDS             complement(4776..6080)
                     /gene="lem28"
                     /locus_tag="JBH85_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem28"
                     /protein_id="HAU0944711.1"
                     /translation="MYSDFFFTIMLKYSTNMLELAMPKINKIVNGTDLTPHYLSEPNK
                     EFKIYRYNNEVYAVRFENDEPMDYVLMWKSHKSEHTQNSEMIKNTEEDYKELGKGEQG
                     TVYEKTEDKAMKVSRGRHPREFYEEINLHIIEQQFFLKYHGIQEHFVLGLWNIKNEEN
                     VYFYMPKINAIPINKKIDQPKIEEFVLALKELNDAGYWHPDLANNPYHISPQNLIATE
                     EMVKTIDLDGGFRYDKGRVDELSRKSLVYGKDQWLYVYNFIYPPTDEEDHRIDWRVPI
                     EKWYENNRDESLSDNPHTLLRFYHEGLISLPKKLAHDLHETILEELSQDKKFKKHSHE
                     VGVNRFFSPKKQEIYEGLKGDGLKKVILKELRDSLAEIRTMEQLEEKKLEFLASPEMQ
                     ILAEGQDKTTKALNLKTSSRKKVMVIFKEAEERILNSPNVSI"
     gene            complement(6098..6520)
                     /locus_tag="JBH85_00710"
     CDS             complement(6098..6520)
                     /locus_tag="JBH85_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HAU0944712.1"
                     /translation="MKSISQCLNKQLSTICQHSMQLEELSLKISAFLPSHFISKCQVG
                     SFNKGCLVLTTTNAAFASEIRYLLPELRDKLRKEAGLYQLSSIKITIIAPSSQIENPA
                     QKKSLTLSEKAKATIISESQHCTYEPLKKALLHLAQSE"
     gene            6651..7091
                     /locus_tag="JBH85_00715"
     CDS             6651..7091
                     /locus_tag="JBH85_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HAU0944713.1"
                     /translation="MAENTTESNVIYFTRLHWIIFFGPFVGLGLVMAIYIYIIQLREV
                     SLFLGFFALIWILITWVTYHFSSITIKRKQVILRTGIIVRQTVDIPLNKIETIDIRQS
                     ILGSILSYGTLIITGTGGTRYLINYLYKPLTCRRYIEQLMNEPH"
     gene            7227..9200
                     /locus_tag="JBH85_00720"
     CDS             7227..9200
                     /locus_tag="JBH85_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAU0944714.1"
                     /translation="MNYRSDIDGLRAIAILFVLFFHGGLTLFPSGFIGVDVFFVISGF
                     LITSIIEKSLQNNRFSFMDFYSRRLWRLQPVFICLIVVTTLVTLFYYLPDDLMLFSKS
                     ARKTSIFTSNVFFKNVTSDYFSPDSNQLPLLHMWSLSVEWQCYFILPVGIYLLYRLVG
                     PQHRIKITYLLTITFFALSMYYSWSNPAKTYYQFSSRIFEFLIGSCVASASGSKRFLA
                     NKYVLNFITVLAVLTLFYIAMHHDINIGFPNWYTLILCLATAILIAAGQQEPQPIVTY
                     ALSLRPLVFIGLISYSLYIWHWPVLALIRYLNIEESNLVLLVTFGLISIIAYLSWRFI
                     EKPARKLHRIRFSYTVVCLLIMPVFVTHLSDYLIKKNAGYPYRFNEAIQVYAELNKYK
                     NPQRPLCLERKNTEVNPQCVLGAKNSDSRTGFMIGDSYSNQHWGFMDTLAKEANVSIL
                     AHATVACLALPDIYQFDWNVKNKIYQECHDQTNRYFNMIKTNHYDYVILGQNWNGYFG
                     DRIINQLNDNRSQELSLKRIEKALDKALELITTSGAKPVLIKSIALSKGNPYNCFFEH
                     IKLHKKYNPERCDFNLDVSEQIWFDNLFAKMQRKYKTLVIIDPRVAQCPSGMCKVDIN
                     GIPVFRDSGHITDYASYHLAKLYLEKNNNPLVS"
     gene            complement(9302..11581)
                     /gene="topA"
                     /locus_tag="JBH85_00725"
     CDS             complement(9302..11581)
                     /gene="topA"
                     /locus_tag="JBH85_00725"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HAU0944715.1"
                     /translation="MSKHLVIVESPAKAKTIQKYLGNDYDVLASYGHVRDLPARKGSV
                     NPEKHFSMTYVPIEKNARHIDTIAKTLKKSDSLLLATDPDREGEAISWHIFELMKERN
                     LLKDKSVHRIFFNEITKAAIQDAINHPRSISMDLVNAQQARRALDYLVGFNLSPLLWK
                     KIRRGLSAGRVQSPALRLIVEREEEIERFIAQEYWKIIAKCAHASTEFEARLTHYNEE
                     KLQQFSVTQQEQAHEIKKQLIAQAQGFLTVAQIDKKQRKRKPSPPFITSTLQQEAARK
                     LGFTARKTMMVAQQLYEGIDIGTGTVGLITYMRTDSVNLAKEAIDEIRDYITQRYKGD
                     NCPNSPRIYKTKSKNAQEAHEAIRPTSIKRTPEMVQGSLTSDQLKLYSLIWKRTVASQ
                     MADAILDTVSVDFSCGKGNTFRANGSTIAFPGFLSVYEEGRDDSKDEDNEDKILPAFN
                     VGEKIKVSDIETNQHFTEPPPRYSEATLVKALEEYDIGRPSTYASIIHTLQQREYVVV
                     EKKRFLPTDVGRIVNRFLTNYFTRYVDYQFTAGLEDTLDAIARGEKDWIPVLEEFWQP
                     FVQQIQNIDEQVQRKDVTTELLDEKCPKCQKPLSIRLGKRGRFIGCTGYPDCDYTQDI
                     SNPEGEKSEPEVVEGRSCPLCHGALHIKTGRYGKFIGCSNYPECKHMEPLEKPSDTGV
                     TCPKCSQAKILQRKSRKGKIFYSCGNYPKCDYALWNEPLDLPCPKCAWPILTLKESKK
                     FGRQILCPREGCDYSAKED"
     gene            complement(11660..12076)
                     /locus_tag="JBH85_00730"
     CDS             complement(11660..12076)
                     /locus_tag="JBH85_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 family protein"
                     /protein_id="HAU0944716.1"
                     /translation="MLLNLFEKSLTQLQKSHKSNDQDSQSQLLEEDLLSAEEQSLFIK
                     SAQEKSTRIFTYDEQMKLTKASYQFLMRMKLWNILDIDQFESIVNQLQFSESRIVTLQ
                     ETKWTIRNALASSLNEEQLTFLDLVLYQTEDELTIH"
     gene            complement(12087..13172)
                     /gene="dprA"
                     /locus_tag="JBH85_00735"
     CDS             complement(12087..13172)
                     /gene="dprA"
                     /locus_tag="JBH85_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HAU0944717.1"
                     /translation="MNNLQPLLALNRMKKIGPRTVLKLQKRWPDLNLMFQLSNVDLEE
                     AGLPSWLAQTIKNFDPGFIKTDLNWLSSSENHHILTWDSPYYPALLKEIADPPFILYA
                     KGELSAMTQPNLAIVGSRNASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGC
                     LEGGGKTIAVLGTGIDCIYPRRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRII
                     SGLSLCILVIEAAIKSGSLITARMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLV
                     TSVADVLDELKIEHHQFTSNKPIFSLASGKENLVKFIGFETTTIDQIIDRSGYGMEQV
                     TSGLAELELKGAVMAVPGGYIRCEYER"
     gene            complement(13169..14206)
                     /locus_tag="JBH85_00740"
     CDS             complement(13169..14206)
                     /locus_tag="JBH85_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HAU0944718.1"
                     /translation="MRYCLLIFCFIISSITHALSLRPDSPSRYVVQPGDTLWSISSRF
                     LNNPWEWKALWRANPQIKNPDRLYPGAVLALEYYQNIPYLRVLSNGTIKLSPNIRVTP
                     QEDAVPPIPLGDIKPFLDESLILDVNVLNRAPYVVALMSERMLGGQGDEIYVRGLHPS
                     KEMPQGGTIGYSIFRGGRNYFDPITHELLGYKAVLVGYGELVAGGEPATVLLTSINQG
                     IKINDKVLINNHPEFELYFEPETPARQVRGYIIEMPDNMPVGNTQEAVGGVIIINLGE
                     TSGIKPGDVLAIYGKERIVNDPQNHLRPITLPQERLGEAMVFRVFTKASYALIVRSTR
                     AIHLLDTVTNP"
     gene            14300..14812
                     /gene="def"
                     /locus_tag="JBH85_00745"
     CDS             14300..14812
                     /gene="def"
                     /locus_tag="JBH85_00745"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HAU0944719.1"
                     /translation="MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARG
                     VGLAAPQIGVSLRLSVIDIVGDKKEQIVIVNPEIVSSHGEKEFEEGCLSVPGAYDTVV
                     RAEKVTVKALDRFGKPFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLD
                     KFKRLQARKP"
     gene            14809..15753
                     /locus_tag="JBH85_00750"
     CDS             14809..15753
                     /locus_tag="JBH85_00750"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HAU0944720.1"
                     /translation="MNGLTVVFAGTPEFGLPCLDALIQSRHHLKAVYTQPDRPAGRGR
                     KLQESPVKEWAINHQIPVYQPLNFKNQEAVDELSALKPDVMVVIAYGLILPKAVLEIP
                     RLGCINVHASLLPRWRGASPIQHAILHGDAESGVTIMQMDVGLDTGPMLCKAACPVTS
                     SDTAGSLHDKLAKMSVKPLLDVLEALASNSAQFELQNNELATYAGKINKEEARINWHQ
                     SAVEIDRKIRAFNPWPVAYTLAGELMLRIHQAKATDIMSTEMPGMILNIDKNGMLVAT
                     SDNALLVEKIQFPGAKIISVRDWLNSGKTQLHTGLMLQ"
     gene            15750..17033
                     /gene="rsmB"
                     /locus_tag="JBH85_00755"
     CDS             15750..17033
                     /gene="rsmB"
                     /locus_tag="JBH85_00755"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HAU0944721.1"
                     /translation="MKVNDRFNALKILTALIESRKNLSYLMSPQEISPMTKEICYGFC
                     RHYFRLQSIADTLINKRPKDNELWIVLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS
                     WAKGLVNAVLRNFCRRKDHILEKLAAEPVFIYGQPNWLLQRLQKDWPNDWQFIAAAND
                     RHPPMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGS
                     VSVQDAAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKEPGLASCVALDLDPQRLQ
                     RVRDNLNRLDLQATVVQGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRT
                     DEEISAISQVQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIAQFVAEHSDCQVSD
                     GKWSWGRWTGHGQQILPGEHSMDGFFYSVLRKDEK"
     gene            17030..17779
                     /locus_tag="JBH85_00760"
     CDS             17030..17779
                     /locus_tag="JBH85_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HAU0944722.1"
                     /translation="MIIDWPVIIVLFCLSIPGVLIVMHRLVYFLLADNTERLKKRFSR
                     FVVLQTLFMTFVMSFAGSILSSRTGLGDPLLEGLLQGKASLDSFQVILLPTFLYALLG
                     LVIFCILYYGLFGSILDEKSFKIMSELRSKIGLDGCVLYGGVVEEVIARWGLMNVVCF
                     FALLFTSQINSEIIIISIFLSAFIFAVGQLPAYIAAGCTPSRRFLYSFVLLSLSQSIL
                     FGFLFWQYGLTSAILAHMLFHLGWDRYEKLF"
     gene            17952..18449
                     /gene="ceg33"
                     /locus_tag="JBH85_00765"
     CDS             17952..18449
                     /gene="ceg33"
                     /locus_tag="JBH85_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg33"
                     /protein_id="HAU0944723.1"
                     /translation="MAAQLDPSSEFAALVKQLQREPDNPGLKQAVVKRLPEMQLLAKT
                     NSLALFRLAQVYSPSSSQHKQMILQSAAQGCTNAMLSACEILLKSGAANDLITAAHYM
                     RLIQSSKDSYIIGLGKKLLEKYPDFAEELKSKEVPYQSTLRFFGVQSESNKENEEKII
                     NRPTV"
     gene            18566..19357
                     /locus_tag="JBH85_00770"
     CDS             18566..19357
                     /locus_tag="JBH85_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HAU0944724.1"
                     /translation="MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEP
                     LVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIGDYSDQQACALTLIENIQRQDLN
                     LIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
                     HARVLVGLNPEQQEMFAQQIIGEEWSVRHLEQEIKSYKNKDINSPKNPRKDRDIERLQ
                     TILAEQVGAPVQIVNDGEDGGWLKVKFFDNDTLAGLLERLGLRYD"
     gene            19449..21242
                     /gene="dacB"
                     /locus_tag="JBH85_00775"
     CDS             19449..21242
                     /gene="dacB"
                     /locus_tag="JBH85_00775"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HAU0944725.1"
                     /translation="MKRTLTGAFMWAVWSLSSHAASMQFEVDKLINRLNPHVNLGIVV
                     TDLTSGETLYKRNANRLYIPASNMKLFSEAAALMALGPDYQFKNQLSTSANQLQQGVL
                     HGNLYLHLSGDPSFSREDLKTLLSSLKDWNITTIQGNVIIDSSLMSIPAYPPGWLTSD
                     LSYSYGAPIAPLMVDSNRLTITVNPGAKAGAPAIVEVDDGGGTINLNNQATTKASEKG
                     CGVGFYLDPENNLTVRGCVGLGQWAVQQRIAIKNPFVYAQGMIVSELAKSNIKLNGQV
                     LLGRAPAGTLLIATRYSKPISQLMADTLKPSDNLYADSLYLHAAAKIKGSPVDWKQAQ
                     PVIKNFLQQQTGIDLKDSNFTDGSGLSRYNLVTPAQTMALLKFLYQRFPLSYEYIAAL
                     PISGRDGTLQKRFKTPNQQGFVRAKTGTMTGMNSLSGYLYTANGHTLAFAMYINRLPG
                     KPAGPGRPLLDALCTYFLQQSPTSSRLARVLSPHSRIKFQFNPTQIELQRVHQAKWRR
                     LETAVRQVLRGQDVNVVYRGNELIVTDNQSNANSVWKALQSIGKKYSFAVALSSKVMP
                     VTPSGKPLLLWVQAPLSENKAERTWIIREAV"
     gene            22031..23188
                     /gene="legS1"
                     /locus_tag="JBH85_00780"
     CDS             22031..23188
                     /gene="legS1"
                     /locus_tag="JBH85_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegS1"
                     /protein_id="HAU0944726.1"
                     /translation="MNFSIRVILLLTGFVSLAFSAPKFLTISDIHYGAENIAKDGQDT
                     GKEFLDVTFKRFEELSQNVDFILHLGDLPTHSLFSIPKKEEYEQVVFHGLHEANPGQK
                     PMFYITGNNDSLLGNYQPFSSDNKSPLNLALDWDGACAYCDGLIIDDTHMRKDGYYSS
                     YVIPNNKEIILIALNSVQWTKTPVFLPKYPNQQRDAFVQLFWLEQQLKNHRAKQLLLA
                     MHVPPGTAYNGNRFWHDIYLDRFLTLLDKYHQSYDQITILFSHSHMEEFRKIRLSDGS
                     TIYAFSTPGISRAHHNNPGMKIFDLDKQMRVRNSTTYYTSDLYEWGNEYYQAMNTPDA
                     IFPNCQNKTIPQCLDTLSPEQVCNNLEVGLFYGVKSTRVPYQGCIKTYQIN"
     gene            complement(23205..24755)
                     /locus_tag="JBH85_00785"
     CDS             complement(23205..24755)
                     /locus_tag="JBH85_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAU0944727.1"
                     /translation="MAQKPTKITHLVVLGDSLSDRGTLNKRELLGFIPMSYLSGLRSK
                     SPKGRFTNGFLWGDYVGATTAEQFEIEHIRRKLRLHNNARDNADIGDELLINDKARRE
                     NENSFSLNEDNHILFKGERFARFYCEGGLTSHDYSCSFTFNLVLFFTRLILATLGGKR
                     TQLLADDKKYNISNLEKSETLVVEWSGANDLITANDKPSRAAAEKAVNDRIQNIEALI
                     HNGYRNFVLFNLPNLSLTPRFQRKNAEEQRNASDCTEYFNQQLQTKSLELIKKYKELG
                     IPVNLSVFDVNEQFKEVYSNPEQYGFDRDKLKSPYVESDLFKENQKNPVDQKEHISPA
                     KGYMFWDDVHPTATMHDWLAERFKEKYYDKVFRFEPPLQAKHRHKETADALAKTTDSM
                     VKTDKPVKKLPENIVLMLNAIHSRAQLMCQSTDDQRREKGELLKHFIFEIKCQHGNLE
                     NIYGLISAFTLNPDHSKIIKTHQNPIIDFFRNKATTRSEDDIAALQKAVAAYLQPEDN
                     KEHLVKLT"
     gene            complement(24976..26070)
                     /locus_tag="JBH85_00790"
     CDS             complement(24976..26070)
                     /locus_tag="JBH85_00790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C1 family peptidase"
                     /protein_id="HAU0944728.1"
                     /translation="MRVSKLLFLTLALSGNLFAQDIKVVGTLNQTLKAPQNKTLNTKP
                     AIQQIKLLKMQLSNSAIKALARKTDITLKKPNTITTSTALPSKVELGMNNVPVLNQGS
                     FGTCVTFATTAAIDAALNKGDYISQLCQLQLGLYLEKNGHSPSGWDGSLGRIVLSQME
                     NFGIVSKEKQKNLGCGGLTEYPDNEQPTPDHAMSLEQFHEMSEDPETNPVIYTPILDV
                     YQAVLDRTDTNKTINDIKTALNQKDRVTFAVLLLDFDLGVMGAVGTNKTQFDTWVLTP
                     EIARDIYLRPFFGGHEMIITGYDDNAVAVDDNGREHKGLFTLRNSWGEQFGDKGNFYM
                     SYDYFKVLTIEAQRIRALADNESEEESMTA"
     gene            complement(26272..27003)
                     /locus_tag="JBH85_00795"
     CDS             complement(26272..27003)
                     /locus_tag="JBH85_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HAU0944729.1"
                     /translation="MKEISALFFLYLISTASFSLPKGFVYLHDVAPDIIEDIRYATHN
                     NFIGNPIPGYKRGVCIVTRQTAQQLKKAEEYIKPKGYTLKVYDCYRPQRAVDYFYKWS
                     RNAKDHRMKPEFYPREIKQDLFDRGYIALTSGHTRGSTLDLTLVKLTASREKKSNHPL
                     TRCYDKTPNYLNDDSIDTGTRFDCLDVSANIDYSKLSKNQKANRELLQKLMKRFGFRP
                     YYYEWWHFTLKNEPYPDTYFNFPVE"
     gene            complement(27029..29767)
                     /gene="sidF"
                     /locus_tag="JBH85_00800"
     CDS             complement(27029..29767)
                     /gene="sidF"
                     /locus_tag="JBH85_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SidF"
                     /protein_id="HAU0944730.1"
                     /translation="MPRITENIETYVTHLLSDLEPVPSQNQHLAYGYPGERQVFKDPM
                     LDGKQVVVVNSQYDKHGRPVTGQPDVIQEANNYIDNLVAAAKSLIDKDKKGEKDLRKN
                     AIDEMAKTFKKSISETIPSDKAKADLFSSKKSSANKDFLEQLAKVEGSLQQFTQAVAK
                     ASGHKLKALDKEGHNIRSHNRDTLIHRFKAPNSKEGEEQFIMYIPCGRYTKRQQRLMG
                     KDESEVNRDHDTTSHKRSDLVLGNSSMARMIAGTRHSDGTVTIHHDSFSGPGARMPYS
                     DFKGADDYKKLAIKAVTLINQEEVIQTLAQRQIDRMTNEDLWNKIPEEYRPDELPPDA
                     EKARAQLIKLYVEHNPLSVTECYTQVVTAGQRVAAENQKEQFEYVRQMMDAFDGSKAK
                     ITIQTGSNTEVETAVGYQARMSSWGVNWFRQVGALNPLSDNSVTKNQNARFVNQMTDD
                     VIRNLDKVAQNLGDYDKAGALHTLLKGPDVSDLNQQITEKENALKEVKGAYREALFSY
                     FEEYQKGEGKWDQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAYYTEHKGQ
                     INKALQELKEQISPVIQNKETDPETKSRLQHFYNSCAYLTQAQELYYENTWHHGKNNF
                     KLQTLMASLSCELDYANTKGCKSNNDRGQRLAQKIVGNALWTAMSEDGLYTGEFLDHR
                     RTHGKEVSNVEQLDRELTTIQALHHTANTGVSGGKFEIQDKANFADNGLFGKVANFAK
                     IKEMGPENAFTKNMGTKIKAGLGLGLLAAGGFVALTLLFPPAGLAVAALGIGVAAGAA
                     IVAGVTFAATYLFGTAIDAINNKIEEGKIKSIVREGMKAASENSPQHKTEQKDHLTVN
                     AKLHQQLGVTRESVLERQSTPKQEFEKPKDMTSKVDLTAAMEDDNRSESTPTPVNF"
     gene            complement(29949..30128)
                     /locus_tag="JBH85_00805"
     CDS             complement(29949..30128)
                     /locus_tag="JBH85_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944731.1"
                     /translation="MKWIMLIVVIITTAGCCCTTAEVVEYQQVTVAAPVVEPVILDVD
                     DPEPLDVTTTTIEFY"
     gene            complement(30251..30589)
                     /locus_tag="JBH85_00810"
     CDS             complement(30251..30589)
                     /locus_tag="JBH85_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HAU0944732.1"
                     /translation="MEAASWVGRKSYRCHKPSFIGYKNMKRKKPVAVALRYDGNSPPK
                     VTAKGEGLFAQQIINTAKEHGIPLEQNPELTALLSQVRLNEEIPKALYIAVAQILAFL
                     YYINGKHSKE"
     gene            complement(30514..31680)
                     /locus_tag="JBH85_00815"
     CDS             complement(30514..31680)
                     /locus_tag="JBH85_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HAU0944733.1"
                     /translation="MSVEMSKTSSARFPPGQEIKLAKPATELYIGQILKTVVVTTLSN
                     DQVLININGQNLNAKASHHFTPGELFEVKVIANHPETILEVQQKTPLPSLLQNALLQY
                     LPKQAPATNLLQTLTQLMAENNLSAPINQVMKTILGNVPVLTQLPNQLMQAISQSGVF
                     LESKLLKGKIPREIQSDFKGLCFKLLHRLGTDSKLPINLPNELESGFLQQAALPLPGA
                     IPQPLAKDTILNLIGLSTEAVHHILREQVTQALARITTNQINYLSQENQEAYLIMLDF
                     PLKTPDGIDVIPIMIKQHKAEPMQLSKWSISFALNLSHLGSIQATVSIYAKNIDIKVN
                     TQQSSTLQLLNDYHKDLEETLYESGLHLREWKLQVGLEENHIDATNLRLLDIKI"
     gene            31885..34155
                     /locus_tag="JBH85_00820"
     CDS             31885..34155
                     /locus_tag="JBH85_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0944734.1"
                     /translation="MVIAQFKQGVVMLDRASVVDEQFLKRVLQGDFPQLRSSMSPDTA
                     ELDKKTAIEFFDSQIKSRLLDIIARQLKEKGLSFYTIGSSGHEGNAVLGQVFRASDMA
                     FLHYRSGAFFLQRAKQLPGIDGVKDILLSLVAAASDPISGGRHKVFGSVPLNIPPQTS
                     TIASHLPKALGAALSITRARELGLPSKLTPDSVILCSFGDASTNHATSQATLNACSWI
                     TQQNYPLPIVFICEDNGIGISVPTPSSWIKSSVSSRPGIHYIECDGLNIADVFAKAQE
                     ADYLARVKKQPVFLHMRCVRLLGHAGSDIESQYNTQEEIEQREANDPLLHTAGILYRE
                     GWMSLQAMVELYQDNRALIEAKALEAIREPRMSSAEEIMASIVPRIDKKQKYSLPDDN
                     RRAQVFAGAYNQLTLKRNLCQQINFALTDLMMQYPNMLIFGEDVGKKGGVYRVTADLQ
                     ARFGQRRVFDTLLDETTIIGTAIGLAHNGFIPVPEIQFLAYLHNAEDQLRGEASTLSF
                     FSSGQYQNPMVLRIASLAYQKGFGGHFHNDNSIAVLRDLPGVIVACPSNGPDAAKMLR
                     TCMRLAYEEGRVVVFLEPIALYMTKDLYSPGDNGWLFEYPSPDEMISQGEVGVYGEGD
                     TVILTYANGYYLSRQAEKVLREAHNISVKIIDLRWLSPLPKDAILKEIAKAKRILIVD
                     EGRQSGSISEGLMTLLMEEASPRLKIKRITGKDCFIPLGTAWQYLLPSQESIIDAVIA
                     LQSDKREKESGRLVVS"
     gene            34133..35290
                     /locus_tag="JBH85_00825"
     CDS             34133..35290
                     /locus_tag="JBH85_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAU0944735.1"
                     /translation="MDDLLFLDEQLHDDERMIRDSVSRFVSNDVIPLMAESYEHAHFP
                     KELIKKSADLGLLGLTLPAEYGGAEASYVAYGLVCQELERGDSGLRSFVSVQSSLCMY
                     PIFKFGSEEQKKRYLPEMAAGNIIGCFGLTEPDSGSDPASMRTHAKKIEGGWILNGAK
                     MWITNAPIADIAIVWAKTEAGIRGFIVDTKSEGMSCPEIKLKMSLRASITGELVFDNV
                     FVPDENLLPKSEKGLGAALSCLSQARYGIAWGAMGAAMACFDIARDYLLERKQFAKPL
                     ASFQLIQKDLADMYTEIIKAQCLNLQIGRLKDQHRETPTMISLAKGNACREALKIARK
                     CRNLMGGNGISLEYHVIRHMLNLESVFTYEGTDNVHTLVLGRHITGINAFG"
     gene            35485..35898
                     /locus_tag="JBH85_00830"
     CDS             35485..35898
                     /locus_tag="JBH85_00830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944736.1"
                     /translation="MDIRCKTVLYKQLQEFNMINMKLKATLIACLSVLTLSGYANSSE
                     NKEAILQQCHDLASTVASLVSSQAKKTCAEKLVIASIHIDTAADWIVEDVHSAAKQEL
                     DNAIYSLQYAELNSCNRYIQISHSKLEAQRIKSLL"
     gene            36141..36395
                     /locus_tag="JBH85_00835"
     CDS             36141..36395
                     /locus_tag="JBH85_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944737.1"
                     /translation="MIELEPEPDTVLDPKDILTEEMKLEGSDNDMDHNQFTRGDEVDL
                     VGDGVPGYETTGQDGTDDEIEEQREARYTPTLNPNPKNVP"
     gene            36491..37249
                     /gene="mavM"
                     /locus_tag="JBH85_00840"
     CDS             36491..37249
                     /gene="mavM"
                     /locus_tag="JBH85_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavM"
                     /protein_id="HAU0944738.1"
                     /translation="MLVTPRFKIMVVVKKREETQKDERARAIENNPCSICRSLGLPFC
                     RGHGGGSGGGGSDSASDDKVDDNDHQLLAPKNPANVTNIEQLLLHSGLWHLPEDEDFV
                     FEFKDPLALVNMTLNMELGLLVLQGKRELGNEEQNALDELYEMIAKEFNLFKNSIKDP
                     QVPLETITLAREGNSLTIKIPSPKYYDLFVQQLMDKNLLPSNTLALQHQNQSVKYPEK
                     SKATMEKDLVGEEYKSSLPNPFDISRGPKLPDWI"
     gene            37314..37504
                     /locus_tag="JBH85_00845"
                     /pseudo
     CDS             37314..37504
                     /locus_tag="JBH85_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842993.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            37545..37922
                     /locus_tag="JBH85_00850"
     CDS             37545..37922
                     /locus_tag="JBH85_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 family protein"
                     /protein_id="HAU0944739.1"
                     /translation="MTVPEITLSRVYSPPEHKEGLWILVDRLWPRGIKKDSFLLDMWL
                     KDIAPSPALRKWFHQDSEHWHEFAKRYAQELKEKPELIEHVLALASTSPVTLFYAAKD
                     LQHNHALVLQKVLKSWPKIPEIK"
     gene            38036..38112
                     /locus_tag="JBH85_00855"
     tRNA            38036..38112
                     /locus_tag="JBH85_00855"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38070..38072,aa:Pro,seq:ggg)
     gene            complement(38407..39015)
                     /locus_tag="JBH85_00860"
     CDS             complement(38407..39015)
                     /locus_tag="JBH85_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944740.1"
                     /translation="MDIRTSFYWDAKNKSIHYLICDFTENEFNLLVEPRKIDINLNDF
                     KYNVQKAVREYFDQLNSFNPQDIKIEYKILASGSPAQLFQKYRNSSDYSEIVKTIFET
                     GVKEFNANFSIKLQPQTKSLLTGEPLNQLKNILHRLGLINSMRKDAYKWHLWSIMIHA
                     TNSTYNEKIRKQLWKPLIDTLNSSKGSAMRYEEWIAQASINS"
     gene            39133..42531
                     /locus_tag="JBH85_00865"
     CDS             39133..42531
                     /locus_tag="JBH85_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003632346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM0106 family RecB-like putative nuclease"
                     /protein_id="HAU0944741.1"
                     /translation="MYLDSNQIVFSPSDLTQFMESPFASWMEHLAITHPNLVPTPDES
                     DELLSVLHDMGNQHESEVLTAFEARGLTIANLRKRTDSYQATIDAMKNGVDVIYQAHL
                     ELLPFRGYADFLIKVQGKSIFGDYCYEIWDTKLAKSVKTYFLVQLCCYAEMLAVMQQT
                     TAEHITIVLGNKEQKRFRVNDYFYFYQNLKHKFLSLHQEFDPVKCLDPASSKSWGRWS
                     IHAENLLLEADHLIQVATITSGQIKKLNKAGIDTMTALANANNKNVKGIKPELFERLK
                     AQAKIQKESIGKDIPAYQLIDNENGKKQGLALLPPKSKNDIFFDIEGFPLEDGGLEYL
                     WGVTYFDDNSQRQYMDFWAHNKDQEKESFRAFIEWTYQRWQQDPSMHIYHYASYEITA
                     CRKLISRYGVCEYEVDQLLRNEVFVDLYKIVKGALLIGEPRYSIKNVEHLYRSKRDTE
                     VGSGGDSVVVYERWRENPDGNTWQTSKVLNDIRTYNIDDCNSTQELVTWLREKQESSG
                     ICFLGKTELVEPEIKEEINERIKLRDNLLEQASQLKGEDQEQLSKINSVMAWSIEFHR
                     RESKPVFWRMFDRLGLSEEELLEDIDCLAYCQRTDKSPYKPTPKARNLVYEYSFDPDQ
                     EFKGNAKEYYLLGCETPDGKNIKAACHAEGSDLENGIIALQIKSEPDSPITLIPNEYV
                     NPDPIPQAITKQAEAFAKGALTHTVIIDFLGKSIPRIKGHMSGQAIAPSHDPNQRLNE
                     IIEAVTNLNNSYLTIQGPPGAGKTYTGKHLIAELIKKGKKIGISSNSHKAINNLLINT
                     AQYCHKEGITGHFACTRNTDSAIDDLKISVLENKDIAGFVQAGRVVGTTAWGFSRDDL
                     ENGFDYLFIDEAGQVSVANLIAMSRATANIILMGDQMQLGQPSQGSHPEDSGLSILDY
                     LLHSTPTIPDSMGVFLGTTYRMHSAVNQFISEAVYEGKLETAPENDEQLITIPIGYNG
                     ILNKEAGIITVPVMHEGNTQASDEEVEKIVSLVHELLGRTFNTKNGKQRTIDWEDILF
                     VAPYNYQVNKLKKALGDKARVGSVDKFQGQEAPVVFLSMCASSANESPRGLNFLFDKN
                     RINVAVSRAQCMAVIVYSPALLDSVPNNIEQITMMNLFCQLVKD"
BASE COUNT        12464 a         7744 c         8876 g        13582 t
ORIGIN      
        1 ttccttcttt agaaatttat ataaagctca aattaagggg aatatcagga tgaaatttaa
       61 gattgcaact tgtattgtta cgatgttatc cagttttata gtattttctt ccaactccaa
      121 tttttccgat aataatacaa acgatcttct tcatcttgac tggcgtgata ccagtgtgtc
      181 accagctgtg gatttttata cctatgccaa tggcaattgg aaaaagaata acccaatacc
      241 cgctgattat gcttcctggg gaagttttta tgttgtaaat gagaaagtac aaaatattat
      301 tcatcagatg ttaatcaatg catccaagaa tactcatgct aaacctggaa gtattgagca
      361 gaaagtgggg gatttttatt ttagcggtat ggatgttgat agcattgata agtcaggtat
      421 cacgcctcta aaaccagaat tcactaaaat agaagaaatt aagaatctca aagatttaca
      481 ggctgaaatt gcccatctgc acaaaatagg tgtagggcct ttgtttaatt ttggcagcat
      541 gcaagatttt aaggacagca cttccatgat aggtgctgtt atgcaagggg gattgggact
      601 cccagacaga gattattatc ttaaaaaaga agctaaattt aaacaggtaa gagaagctta
      661 tgttaaccat cttactaaaa tgtttgggct attgggtgac agtcctgaaa tggcggcaaa
      721 agaagctaaa attgtaatgg atattgaaac tcaattggct aaagcgtcca tgtcacaagt
      781 ggagcaacga gatccacacg ccatttatca tatgatgacc attactgaat tggataaatt
      841 gacacctaat ttttcctggt ctcaatactt gagcgctaga ggtcagggca aaattaaaaa
      901 aatcaatttt gctatgcctg atttcttcaa agcgatgaat gaattattac agtcagttag
      961 tttggatgaa tggaaaattt atctgcgttg gcatttaata gatgcattcg ctccttattt
     1021 atccaaaccg tttgtcgatc agaattttaa gatggtttct gcattaactg gtacacaaaa
     1081 actattacca aggtggaaaa gagtagttaa cactgaaaac ggtgcattgg gatttgcaat
     1141 cggagaattg tatgtagaga aatatttttc tcctgaatcc aaacaaaagg tcttggatat
     1201 actaaaaaat atcagagcag tattacaaga agatataaaa actttaagct ggatgtcacc
     1261 caagactcgt gatgcggcat tgaaaaagct agatttaatg gaagaacgag ttggttatcc
     1321 caccaaatgg tgggattatt ccagcttgaa aatagatcgc ggcccctacg tattgaatgt
     1381 tatcagagca aacgaattct tgatcaatcg agatctcgac aaaattggta aacctgtaga
     1441 tagaagtgaa tgggcgatga cacctcaaac gatcaacgcg tattatgatc cttcaatgaa
     1501 taacctcaat atacccgcag gtatattaca atctcccttt tttgatccaa aggctccgac
     1561 tgccataaat tatggagcaa tagggtatgt tataggtcat gaaatgacgc atggatttga
     1621 tgatcaaggt gctcaatttg atggttatgg aaatttgaaa aattggtggg cgccaaatga
     1681 tttatcaaaa ttcaaaaatg cgacacaatg cattgctgat caattctcaa aatatgtagt
     1741 agatggcgat ctgcatgtac agggacaatt ggttgttggc gaagcaactg cagatctggg
     1801 cggaatgatc ttggcatata aagcgtttca gcgttcaaaa gagtacaaga atgctaaaac
     1861 gatagaagga attacccctg atcaacaatt tttcttagga acagctcatg tttgggctat
     1921 gaatgtcagg ccggagcaac ttcgtaatca agtgacaaca gatccacatc cgcctgctgt
     1981 atacagagtc aatggtagct tggcaaatat gcctcaattt caagaggcat ttaatattcc
     2041 aaatggtagc cctatgataa gtaagaatcg ttgcatcata tggtaaagtg agttgatttg
     2101 cagtgattcc gggtacctta taaaaacgcg caatgacagc cgaatggatt acagatttag
     2161 ggatatgagt aatagaaagt tggaagttag ttaattaatt agagtttgct attcgaatca
     2221 ctcaatgagg gaggctgtta tgtgtcgatt cgttgcttat ttgggacgcc ctacgctatt
     2281 ggaaaatgtg ttggtaagac ctaagaattc aatcatcatg caaagtctgc atgcgcgcga
     2341 aaccaaatat cgaaccaatg gagatggttt tggtttggga tggtattcac cagaagttag
     2401 ctctgatcct gctttgttca cctccgttta tccagcctgg aacgatagaa atcttttaca
     2461 cttaacagca aaaattcagt ctccttgttt ttttgctcat gttcgctctg ccagtgcagg
     2521 aggagtaacc aattataact gccatccctt tatttatggc gattggatgt taatgcataa
     2581 tggggaaatt aatgatttta ttgatgtgaa aaggcatata aggcatttgt tggatgatga
     2641 catttaccat tgggttaaag gtcaaacaga ttctgagcat ttgtttggtt tgtttttgca
     2701 attagcaaaa ggaagagaca ttactcaact atcggtggct gctgatgtgc tgcaagaaac
     2761 tattaacaaa atattggaag taataggaca atttggccat agtggacctt cctattttaa
     2821 tatttgtctt acaaatggta aaaagattat cgctacccgc tattgcagtc atgagaagaa
     2881 aaaacctttg acgctgcatt atttgattgg gtatgtatta tctactcaag ggttatggat
     2941 aaaagaagaa ggtaatccag cttatgttgt agtctcttct gaaaggctaa atgatttgga
     3001 tgaaggatgg gaagatgtgc caccacaaca tatgatactg attgatgaaa ataaaaacat
     3061 tcagttgcgc cctttacaaa cattgggtta aacttgaatg attttaacaa taagagacaa
     3121 ttatggctaa agaagaaatg atttgtagaa taattagatt cattactcag aaaccaagta
     3181 ataaaaaaac ttgttgtgga cgttaatgag tttttctctt tctgaattac ttcactataa
     3241 aaatgaaaaa atagtgactc atttttgcta ttctcatcca gaatattcca tacaagaagg
     3301 gctatttctc tttgaggatt tattagcctg gatgtggctt aataagcaaa gaaggttgcg
     3361 ggggaaaaaa acctatcttt ttggaccatt attgatcctc gacgagatgt ggcattcttt
     3421 tattttgcat actcgggatt atattgattt ttcaatgaag tacttcggcg aatactttca
     3481 tcatgacgtt gaacctgtag gttttgagca tgtcttggat gaagaggaat tggccgatta
     3541 tctgcaagat tgctttcagt acctcaataa ggagtgggtt gaaaggagat tttcaatcgc
     3601 ctttgcggaa atggatgatt aagttcaata atagtgttga tgatgaaaat actttaacaa
     3661 tgaactatcc acaaaagtta ggaacactgg tttaaagcaa attgaataat ttccctcgaa
     3721 aaattatcag cgctccacaa atcattatgt tctttgtcgt caaaagaaac cattttttta
     3781 ggttcattgg cttcattaaa aacatttaag ccctcttgat acggtactat ctgatccagt
     3841 tttccatgca aaaccagaat gggggcatta atttttttca tacgggcaag tgaattatat
     3901 tgatcccagg gtttaaggaa gttcaatggg tagtgatact gggcaagcct ggttagtgat
     3961 gtaaagggtg attgaagtat aaccgcacaa accgggtatt ttgtggcaag gtgagttgct
     4021 acgccggtac ctatggattc cccatataga atcacgcgct ttgatggcac accatgttga
     4081 attaaaaatt caatggctgt ttctccatct tcataaagac ctttctcgcc aggtttgccc
     4141 ggattgcctc cataaccacg atattctaat aaaaatacgc ctaaaccagc gtcaataaat
     4201 tcacgaacca aaggcattct gtaaccaata tggcctgcat tcccatgcaa atagagtatt
     4261 gtagggcgat gcttgcttgc aggtttatac caggatttta aatgtaaatt atcttttgta
     4321 cgtaaggaaa ctactttcat atccgatgca ttgtaatctt ccaactttgg ggtatgtcta
     4381 ttagggaaat aaatgaggtg acgctgaaat aagtacatta gcgtaatgac aatccctata
     4441 ataactaggc cggttagcac aatttgtttc agcatgatca ccttaagaag gatttaaata
     4501 tattgtatta atttgattat aatgcacctt aatcgattgg aagccaatat cgatgatggg
     4561 cgaattgcct caaaagaaat gttagcgaaa gaaggaaata gtgaggctcc atttttatgg
     4621 ggaagttatc aatggagctt tacttaaaaa aattgtcgaa acgctataag tttgccatga
     4681 aaaaggctta attaattttt caagagttat ttgaattaag ccgaaactaa ctcacataaa
     4741 agcatgctat tcacagaatt taaaatggac acgtcctaaa tgcttacatt agggctattc
     4801 agtattcgct cttctgcttc tttaaatatt accatcacct ttttacgaga actggttttt
     4861 aagttcagtg cttttgttgt cttatcctga ccttcagcaa gaatttgcat ttctggggaa
     4921 gctaaaaact ccagtttttt ttcctccaat tgctccattg ttcttatctc agccaacgaa
     4981 tctctaagtt ctttcaggat cacttttttt agcccatcac cctttaaacc ctcatagatt
     5041 tcttgttttt tcgggctaaa aaagcgattc acccctacct catgcgaatg ttttttaaat
     5101 tttttatcct gagataactc ttctaatatt gtctcatgca gatcatgagc aagttttttt
     5161 ggcaatgata taagtccctc atggtaaaat cgaagcaacg tatggggatt atccgataaa
     5221 gattcgtctc tgttattttc ataccatttc tctataggga ctctccaatc aattctgtga
     5281 tcctcctcat cggtgggtgg atagatgaaa ttatagacat atagccattg atctttacca
     5341 taaacaagag acttcctgct gagttcatca actcttccct tgtcgtaccg aaagccacca
     5401 tcaagatcaa tagtctttac catttcttct gttgcaatca gattttgtgg actaatatga
     5461 taaggattat ttgccaaatc aggatgccag taccctgcat cattaagttc tttaagcgca
     5521 agaacaaatt cctcaatttt gggctggtcg atttttttat taatagggat cgcattgatt
     5581 ttaggcatgt agaaatacac gttttcttca tttttgatat tccagagtcc tagaacaaag
     5641 tgttcttgaa tgccatgata tttaaggaaa aattgctgtt ctataatatg gaggttaatt
     5701 tcttcataaa attctcttgg atgtctgcct cgagatactt tcatagcctt atcttctgtt
     5761 ttctcatata ccgttccttg ttctcctttt ccaagctcct tataatcctc ttcagtattt
     5821 ttaatcattt cactgttctg cgtatgctca ctcttgtgac ttttccacat taaaacataa
     5881 tccatgggtt catcattctc aaaacgaaca gcataaactt cgttattata acgatagatt
     5941 ttaaattctt tgtttggctc actcagataa tggggggtta ggtctgttcc attaacaatt
     6001 ttatttattt taggcatagc aagctctaac atattagttg aatatttgag cattatagtg
     6061 aaaaaaaaat cagaatacaa atgagatggt tgatgagtta ttcactttga gctaaatgca
     6121 gtaatgcctt tttcagtggc tcataagtac agtgttggct ctcactaata atggttgcct
     6181 tggctttttc agacagggta agagattttt tttgtgcagg gttttcgatt tgagaggagg
     6241 gagcaatgat ggtaatttta attgaagaca gctgataaag gccggcttct tttcttaatt
     6301 tatcccgtaa ttcaggaagt aaataacgta tttcggacgc aaaagcagca ttggttgtgg
     6361 ttaaaaccaa acacccttta ttaaaactac ctacttgaca tttagaaatg aaatgggaag
     6421 gaagaaatgc agaaatttta agagataact cttccaattg catagaatgc tggcaaattg
     6481 tactgagttg cttgtttagg cattgactga ttgatttcat aacgtccgtc ttaattgtta
     6541 ggtatctatt aaagagttag actatcgaaa agtaagttga tttatgtata gaatagcaaa
     6601 ttaacgttaa gtgcaatatc atattttttt gaggtatata agggtgatca atggctgaaa
     6661 atactacaga aagtaatgtc atttatttta ccagattgca ttggatcata ttttttggtc
     6721 ctttcgttgg attgggttta gtgatggcaa tttatattta tatcatccag ttgcgcgaag
     6781 tgagtctttt tttaggattt tttgcactga tctggatatt gattacctgg gtaacctatc
     6841 atttttcttc cattaccata aaaaggaagc aagttatttt acgtaccggt atcatagtaa
     6901 ggcaaacggt ggatatcccc ctgaataaaa ttgaaacgat agacatacgt caatccattt
     6961 taggcagtat tttaagttat ggtactttga taatcacagg aactggtgga actcgctatt
     7021 taattaatta tttatataaa ccgttaacct gcagacgcta cattgaacaa ttgatgaatg
     7081 aaccacacta aaatagttct cactaaaaaa agattattgt gatataactc tgaatttccc
     7141 aatttgcaaa cctttgtaca gaaataaagt gcaagggtgg gcatgtaatt agtattaatc
     7201 aacaatcatt ttatggaaat tgtagtgtga actatcgctc agatattgat ggcttaagag
     7261 caattgctat tttatttgtt ttattttttc atggaggctt aactcttttc ccatcagggt
     7321 ttattggagt tgatgttttc tttgtcattt caggctttct cattacaagt atcattgaaa
     7381 aatctttgca aaataatcgt ttttctttta tggactttta cagcaggcga ttatggagat
     7441 tacagcctgt ttttatttgt ttgattgtag tcacaacctt ggttaccctg ttttattatc
     7501 tgcccgatga cttgatgctt tttagtaaaa gtgcccgtaa aacatctatt tttacatcga
     7561 atgtgttttt taaaaatgtc acgagcgatt atttttctcc ggatagcaat caattgcctc
     7621 ttttgcatat gtggtcttta tccgtagaat ggcaatgtta ttttatcttg ccggttggaa
     7681 tctatttgct ttaccgattg gttggtccac agcatcgaat caagataacc tatttattaa
     7741 ccatcacttt tttcgcatta tccatgtatt actcttggag taatcctgca aaaacgtatt
     7801 atcaattttc cagtcgtatc tttgaatttt taattggttc ctgtgttgcc tcagcttcag
     7861 ggagtaaacg ctttttagcc aataagtatg tattaaattt tataactgtc ttggctgttc
     7921 tgacgctgtt ttatattgca atgcatcatg acattaatat aggttttccc aattggtata
     7981 ctttaatttt atgccttgca acggccatac tgattgccgc cggacaacaa gagccgcaac
     8041 ctatagtaac ttatgctctt tcattaagac ctctggtgtt cataggatta atttcctatt
     8101 ccttgtacat ttggcattgg cctgtattgg ctttaattcg ctatttaaac attgaagagt
     8161 ccaatttggt tctgttggtt acttttgggt tgatatcgat tatcgcttat ctttcctggc
     8221 gatttattga aaaaccagca agaaaattac atcgaatccg gttcagctat acagtggttt
     8281 gtttattaat tatgccggtt tttgtcactc acttgagtga ttatctgatt aaaaagaatg
     8341 cgggttatcc ttatcgcttc aatgaagcaa tccaggttta tgcggaatta aacaagtaca
     8401 aaaatccaca gaggcctttg tgtctggagc gcaaaaatac cgaagtcaac cctcagtgcg
     8461 ttctgggagc aaaaaactcg gatagtcgaa ccggctttat gataggcgat tcttattcca
     8521 atcagcattg gggatttatg gatacgttgg caaaggaggc caatgtatcc attttggctc
     8581 atgcaacggt tgcttgtctt gctttacctg acatatatca atttgattgg aatgttaaaa
     8641 ataagattta ccaggaatgc catgatcaaa cgaatcgcta ttttaatatg attaaaacca
     8701 accactatga ttatgttatt ttaggccaaa actggaatgg ttattttggt gatagaatta
     8761 ttaatcaatt gaatgacaat cgatctcaag agctttcttt aaagcgcatt gaaaaggctt
     8821 tggataaagc tctggagctt attaccactt caggagcgaa acctgtatta atcaaatcga
     8881 tagcactgtc taagggaaat ccttacaatt gtttttttga gcatatcaag ctgcataaaa
     8941 aatacaatcc cgagcggtgt gattttaacc tggatgtcag tgaacagatt tggttcgata
     9001 atttgtttgc aaaaatgcag cgaaaataca agacactggt cattattgac ccacgagtag
     9061 ctcagtgtcc gtcggggatg tgtaaggtag atatcaatgg tattccagta tttcgcgatt
     9121 caggacatat caccgattat gcttcctatc atttggccaa attatactta gagaagaata
     9181 acaatccctt agtgagttga gataatttgt tgggttaatg gattgcgaat aaaacaaaca
     9241 gatcattcgc aatccaatag cctgaggtac tcagggtgta aaaactggag taacaaagta
     9301 cctagtcttc cttggcagag taatcacaac cctcgcgagg acaaagaatt tgacgaccaa
     9361 attttttact ttcttttaag gttaagattg gccatgcaca tttagggcaa ggcaaatcaa
     9421 gcggttcatt ccacagagcg taatcgcatt ttgggtaatt tccacaggaa taaaagattt
     9481 tcccttttct tgatttccgc tgcagaattt ttgcctggct gcatttaggg catgtgacgc
     9541 cagtatcgga gggtttttct aaaggttcca tatgcttgca ttcaggataa ttgctgcacc
     9601 caataaattt tccatagcga ccggttttaa tatgcaaggc tccatgacac agagggcagc
     9661 ttctgccttc cacgacttca ggttctgatt tttctccttc tggattgctt atatcctgag
     9721 tgtaatcgca atctggatat cctgtgcagc caataaagcg ccctctcttg ccgagcctaa
     9781 tggacaatgg cttttgacat ttaggacatt tttcatctaa taattccgta gtaacatcct
     9841 ttctttgcac ttgttcatct atattctgaa tttgctggac gaaaggttgc cagaactctt
     9901 ccagaacagg gatccaatcc ttttctccac gcgcgatggc atccagggtg tcttcaaggc
     9961 cagcggtaaa ctgatagtcg acatagcgag taaaatagtt ggttagaaat cgattgacaa
    10021 ttctacccac gtcagtgggc aaaaaacgtt ttttttcaac taccacgtat tcacgctgtt
    10081 gcaaagtatg aatgatagag gcataagtag atggtctgcc tatatcgtat tcttcaagag
    10141 ctttaaccaa agttgcttca gaatatcttg gaggtggctc ggtaaaatgc tgattggttt
    10201 caatatccga tacttttatt ttttcaccta cattgaaagc aggtaaaatt ttatcttcat
    10261 tgtcttcgtc tttagaatca tctcgtcctt cttcatagac agaaaggaag ccagggaagg
    10321 ctattgttga accattggct ctgaaggtat tccctttacc acagctaaaa tccacgctca
    10381 ccgtatccag gatggcatca gccatctggg aggccactgt gcgtttccag attaagctat
    10441 agagtttcaa ttgatcgctt gtcagggaac cttgcaccat ttctggagtt cttttgatgg
    10501 aagttggtct aatggcttca tgtgcttcct gtgcgttttt ggatttagtt ttgtaaattc
    10561 tgggagaatt cgggcaatta tcccccttat aacgttgtgt gatatagtcg cgtatttcgt
    10621 caatcgcttc ctttgccagg ttgactgaat cagtacgcat gtaagtgatt aaacccaccg
    10681 ttcctgtgcc tatatcaata ccttcatata attgctgagc gaccatcatg gtttttcgtg
    10741 cggtgaaacc taattttctg gcggcttcct gttgcaaggt agaggtaata aaggggggag
    10801 atggcttacg tttacgctgt tttttatcaa tttgagcaac ggttaaaaag ccttgtgctt
    10861 gtgctatcag ttgctttttt atttcatggg cttgttcttg ttgagtgact gaaaactgtt
    10921 gaagtttctc ttcgttataa tgggtcagtc gtgcttcaaa ttcggtgctg gcatgagcgc
    10981 attttgcgat tattttccag tattcctgag cgatgaaacg ttcaatttcc tcttctctct
    11041 caacaattaa cctaagggca gggctttgta ctcgcccggc cgataatcct cgccgaatct
    11101 ttttccatag caaaggggac aggttaaagc caaccagata atcaagagcg cgtcgggctt
    11161 gttgagcatt caccaaatcc atggatatgg agcgaggatg attaattgca tcctggattg
    11221 ctgcttttgt aatttcatta aaaaagattc gatgaactga tttgtccttt aataggtttc
    11281 gttctttcat taattcaaaa atatgccacg agatagcttc tccctctcta tcagggtcag
    11341 ttgccagcag tagagagtct gattttttaa gagtttttgc tatcgtatca atgtgtctcg
    11401 catttttttc aataggaaca taagtcatgg aaaaatgttt ttcagggttt actgaccctt
    11461 tacgggcagg cagatcacgc acatgaccat aagacgctaa cacgtcatag tcatttccta
    11521 aatatttctg tattgtttta gctttcgcgg gcgactcgac gatcaccaag tgtttactca
    11581 tatcaaataa accttatcct tttgggttgt gtggctcact aacagttcat gaatgggttg
    11641 atatcagtac actcattaat tagtgaattg ttaattcatc ttctgtttgg tatagcacaa
    11701 gatcaagaaa agttaattgc tcttcattca aggaggatgc cagagcattt cttatagtcc
    11761 attttgtttc ttgcaaggtt acaatacgag attcagagaa ttgtagttga tttactattg
    11821 attcaaattg atcgatatca aggatattcc atagtttcat acgcattaga aattgatagc
    11881 tggcttttgt cagtttcatt tgctcatcgt aagtaaaaat acgtgttgat ttttcttgag
    11941 cagatttgat aaacaatgat tgctcttcag cacttaaaag atcttcttca agcaattgac
    12001 tttgggagtc ctgatcattg gatttatggc ttttttggag ttgagtaaga cttttttcaa
    12061 acaaattcaa taacatttca aataaattat ctttcatatt cacaccttat atagccaccg
    12121 ggcactgcca tcacagcccc tttcaattct agttcagcca gtccactcgt gacttgttcc
    12181 atgccatatc cgctacgatc aatgatttga tcgatagtcg tagtttcaaa accaatgaac
    12241 tttactaggt tttccttacc gctggcaagg gaaaaaattg gtttattaga agtgaactga
    12301 tggtgctcga tttttagctc atcaagaaca tcagccactg aagttactaa tttcgcaccc
    12361 tgttgcaata agtagtggca gcccctggct aacgggttat gaattgatcc gggaatagcc
    12421 aatacatctc tgttttgttc cagagccatt cttgctgtaa ttaaagaacc gcttttaatt
    12481 gctgcctcga taaccaaaat gcataatgat agaccgctta ttatacgatt tctgagtgga
    12541 aaatgtccag caattggtgg actttttaaa ggaaattcgc ttaataataa accattctct
    12601 gtaatttgct cagctaattt taaatgccgg cgcggataga tacaatcaat tccggtacct
    12661 aagaccgcta tcgttttgcc gcctccttcc agacagccta aatgagcatg agcatcaatt
    12721 cccaaagcta aaccactcac tatgcttacc ccatgcctgg aaatttccct ggagaatgcg
    12781 cgggcattct cgtttcctgt tacagaagca ttgcgacttc caacaatagc caggttgggt
    12841 tgtgtcatgg cggacagctc acctttagcg tataaaatga agggaggatc ggctatttct
    12901 ttgagcaatg cgggataata gggggagtcc caagttaaaa tatgatgatt ttctgatgaa
    12961 cttaaccagt tcaaatcagt ttttataaag cccggatcaa aattttttat ggtttgtgcc
    13021 aaccaggatg gcaagcccgc ttcttccaga tcaacatttg acagttggaa cataaggttt
    13081 aaatcaggcc atcttttttg cagttttaat acggttcggg ggccaatttt tttcatcctg
    13141 tttaaggcga ggaggggttg cagattattc atgggttcgt tactgtatct aataaatgaa
    13201 tagcacgcgt ggaccttact atcagggcat aacttgcttt tgtaaacaca cgaaacacca
    13261 tagcttcgcc aagacgttct tgcggtaagg taataggtct gagatgattt tggggatcat
    13321 tgacaatacg ttccttgcca tagatagcca aaacatctcc cggttttatc ccggaggttt
    13381 ctccaagatt aatgatgatg actcctccaa cagcctcttg tgtatttcca acaggcatat
    13441 tgtcaggcat ttcaataatg tatcctctga cttgcctggc aggggtttcg ggttcgaaat
    13501 acaattcaaa ttcagggtgg ttattaatca ataccttatc attgattttg atgccctgat
    13561 taatactggt caataaaacc gtagcgggct cgccgccagc aaccaattct ccataaccga
    13621 ccaaaactgc tttatagcct aacaattcat gggttattgg atcaaaataa tttctccctc
    13681 ccctgaagat ggagtatcct atagtgcctc cttgaggcat ttctttggag ggatgcaagc
    13741 ctctgacata aatttcatct ccctggcctc caagcatccg ctcactcatg agtgctacca
    13801 catacggtgc tcggtttagg acattaacat ccagaattaa cgattcatcc aaaaaaggtt
    13861 tgatatcgcc taatggtatt ggtggaacgg cgtcttcctg gggtgtcact cttatattgg
    13921 gggaaagttt gattgttccg ttagacagaa ccctgagata gggaatgttt tgataatact
    13981 ctaaagcgag aacggcacca ggatataacc tgtcgggatt tttaatctgg gggtttgcgc
    14041 gccataacgc tttccattcc caggggttat tcaaaaaacg gctggagata ctccataagg
    14101 tgtctccggg ttgcacaaca taacgagagg gggaatccgg tcttaggctt aaggcatgag
    14161 taatggatga tataatgaaa cagaaaatga ggagacaata tctcatgtat caatcccttt
    14221 agttgagcct tagcatcttg cagcattact gtatatcggg gataatatca cgattaacgt
    14281 gtggagaact agataaacaa tggcaattcg caagattctt tatttacctg atgagcggtt
    14341 aagaaaaata gctaagccgg tcgagacttt tgatgagagt ttacagacat taatcaacga
    14401 tatgtttgat acaatgtatg atgctcgggg agttgggctt gccgcaccac aaataggagt
    14461 cagcttgcgt ttatctgtca ttgatatagt gggagataaa aaggagcaga tcgttattgt
    14521 taatcctgaa atagtttcct ctcatggcga aaaagaattt gaagaaggct gtttgtctgt
    14581 cccaggggct tatgataccg ttgtcagagc tgaaaaagtg accgtgaagg cactggacag
    14641 gtttggcaaa ccgtttgaaa ttacgggtga agggctgctt gccgagtgtt tacaacatga
    14701 aattgaccat atgaatggca aattgtttgt cgatatgttg tctccattga agagaatgat
    14761 ggctcgccgg aaattagata agttcaagcg tttacaagct cgtaagccat gaatggttta
    14821 actgtcgttt ttgctggaac tccagaattt ggcttaccct gtctggatgc cttaattcaa
    14881 tcaaggcatc atctcaaggc tgtttatact cagcccgaca ggccggctgg ccgaggccgt
    14941 aaattacagg agtctcctgt aaaagaatgg gcaataaatc accagatacc agtttatcaa
    15001 ccgcttaatt ttaaaaatca agaagctgtc gatgaacttt ctgccttaaa gcccgatgta
    15061 atggtcgtga tagcctatgg attaatatta ccaaaagcag tgttggaaat tcctcgtctg
    15121 ggttgtatta atgtgcatgc ttctctgtta ccgcgctggc gtggcgcatc tccaatacaa
    15181 catgccattt tacatggtga tgctgaatcc ggagtgacca ttatgcaaat ggatgttgga
    15241 ttggatacag gccctatgtt atgcaaggcc gcctgtcctg tgacttcctc ggataccgct
    15301 ggtagtttgc atgataaatt agcaaaaatg tcagtaaaac cattattgga tgttttggag
    15361 gctttagcat ccaattcagc acaatttgaa ttacaaaaca atgaattagc gacttatgct
    15421 ggtaaaatta ataaagaaga ggcacgaatt aactggcatc agtctgcagt ggaaatagat
    15481 agaaaaattc gcgcatttaa tccatggcct gttgcctata cgctggctgg ggaattaatg
    15541 ctcagaattc accaggcaaa agcaactgat atcatgagta ccgagatgcc gggcatgata
    15601 ttaaatatcg ataaaaatgg aatgttggtc gctaccagtg ataatgcatt gttagtggaa
    15661 aagattcaat ttcccggagc aaagatcatt tcagtcaggg attggttaaa ttcgggtaaa
    15721 acacaattgc atactggttt aatgttgcaa tgaaagtaaa tgacagattc aacgccttaa
    15781 aaattttgac ggccttgata gaaagcagaa aaaacctgtc ctatttgatg tctccgcaag
    15841 agatttctcc catgacaaaa gaaatttgct atggattttg tcgtcattat tttcgtttac
    15901 aatccatagc tgatacttta atcaataagc gacctaaaga taatgagcta tggatagtct
    15961 tgttgatagg tatttatcaa ttgcagtata tgaataagcc ggattatgcc gtggtgaagg
    16021 agacagtgtc tttactgggg caggttaaaa aaagttgggc aaaaggactg gtaaatgccg
    16081 tgctaaggaa tttttgccgt cgaaaagacc atattctgga aaagctggca gcagagccgg
    16141 tttttatcta tggacagccg aattggttac ttcaacgcct gcaaaaagac tggccaaacg
    16201 attggcaatt catcgctgca gcgaatgata gacacccacc catgactttg agagtcaatg
    16261 tgttgaaaca ctcagttgat gagtatcttg atttactaaa aaaatccggg atagaggctt
    16321 ttaaacaccc tgtcgcacct gatggaatta ctttggcaat cccatgtgat gtgatgacgc
    16381 ttcctggttt tgcgcaaggc tctgtgtctg ttcaggatgc cgcgcctcaa ttagcagcgt
    16441 atttattgtc tttaaaaccc gggcagcgag tactggatgc ttgttgcgct cctggcggaa
    16501 aaacatgtca tattttggag aaagagcctg gtttggcttc ctgtgttgca ttggatttag
    16561 acccgcagcg gttacagcgg gtcagagata acttaaatcg attggatttg caagcaacgg
    16621 tggtgcaagg tgatgtattg gaacccagaa gctggtggga tggtcatcca tttgatcgta
    16681 ttttactgga tgctccctgt tccgctacag gagtgattag acgccactct gatatcaaat
    16741 tattacgaac ggatgaagag atttcagcaa tttctcaggt acaatccagt atgttgaatt
    16801 cattatggcc actgcttgca ccaggtggtt taatggttta tgccacatgc tctattatga
    16861 gtgatgaaaa tgagttgcaa atcgcccaat ttgttgcaga gcattcggat tgtcaagtga
    16921 gtgatggcaa atggtcctgg ggaaggtgga ctgggcatgg tcaacagata ttgcctgggg
    16981 agcatagcat ggatggcttt ttttacagtg tattgcgaaa ggatgaaaaa tgataattga
    17041 ttggcctgta attattgtct tgttttgttt atccattcct ggtgttttaa tcgtgatgca
    17101 tcgcctggta tattttctgc tagccgataa taccgagaga ttaaaaaaaa gatttagtcg
    17161 ttttgttgtg ctgcaaacct tatttatgac atttgtcatg agttttgctg gctccatcct
    17221 gtcttcacgt accgggctag gcgatcctct cctggaaggt cttttgcaag gcaaagccag
    17281 cctagattcc tttcaagtga ttttattacc tactttttta tatgcccttt tagggttggt
    17341 tattttttgt atactgtatt atgggttgtt tggttccata cttgatgaaa aaagtttcaa
    17401 gattatgtcg gaattgcggt ccaaaatagg acttgatggt tgtgtccttt atggaggggt
    17461 tgtagaagag gtaattgcca gatggggatt aatgaatgtg gtgtgctttt ttgctttatt
    17521 gtttacaagt caaattaatt cggaaattat aattatttca atttttttga gtgcatttat
    17581 ttttgctgta ggccaacttc cagcctatat tgcagcaggt tgcacaccat ccagacgatt
    17641 tctttactct tttgtattat tgagtctttc gcagtccata ctctttggtt ttttattttg
    17701 gcaatatggg ctgacctcag caattttagc gcacatgcta tttcatttgg gttgggacag
    17761 atatgaaaaa ttattttaat ttttatttcc tgttttgatc aagatgggag ttttttagca
    17821 tttatgtcct taaaatactg ttaaaaaaac agttatgtgt aaaaaaaatg taaaagtgcc
    17881 atctcttaat tttgtcttaa ttttgagcat ttattctgtc tttaatgaag atgataatca
    17941 aaggttgagg tatggccgcg caattagatc caagtagcga atttgctgct ttggttaaac
    18001 aattacaacg agaacccgat aatccgggat taaagcaagc cgtagtgaag cgcctgcctg
    18061 aaatgcagtt attagctaaa acgaattctt tggctttatt tcgtctggca caagtttatt
    18121 ctccttcatc atcacagcat aagcagatga ttttgcaatc agctgcccaa ggttgcacga
    18181 acgctatgtt atctgcttgt gagatattat tgaaatccgg agctgcaaat gacttgatta
    18241 ctgctgcaca ttatatgcgc ctcattcaaa gctccaagga ttcgtatatt attgggcttg
    18301 gcaagaaact gttagaaaaa tatcccgact tcgctgaaga gttaaaatcc aaagaagtac
    18361 cttatcagtc cactcttcga ttttttggag ttcaatctga aagtaacaag gaaaatgagg
    18421 aaaaaataat aaacagaccc actgtttaga ataagttttt tttcgtttca gggtttttct
    18481 ttgtggtcag ataaaccgga tacaattcca tttcaggcac tattgtgaaa caatttcata
    18541 tccttaagtt tcttgatttt ttcctatgca aacccgattt acttatttac ctgttacaag
    18601 cctgcaggca ggtcagtatc aacccaggca agattttaat gtaacggagt tacaggaatt
    18661 ggctcagtca atttcttccc agggtttaat tgaacctttg gtggtaagac ccatagcaaa
    18721 agagcgatat gaaattattg caggggaaag aaggtggcgt gcggccaaat tggcgggatt
    18781 aaatgaagtc ccttgtttga ttggagatta tagtgatcaa caggcatgtg ctctcacttt
    18841 aatcgaaaat attcaacgtc aggatttgaa tttaattgag gaagccactg gttataagcg
    18901 tttaattgaa gaattccatt atcatcagga cgagatcgca gcgttggtag gtaaatctcg
    18961 tagccatgtc gcaaatattc ttcgtctcct taccttgaca gataaggtta aacagttggt
    19021 tcgagacaaa gtgttatcct ttggacatgc tcgtgtattg gttggtttaa atcctgaaca
    19081 acaagaaatg tttgctcagc agattattgg agaggaatgg tctgtcagac acttagagca
    19141 agaaattaaa tcttataaaa ataaagatat aaatagccca aaaaacccca gaaaagacag
    19201 agatattgag cggttacaga ctatcctggc tgaacaagtg ggggctcctg tacaaattgt
    19261 aaacgatggc gaagacggag gttggttaaa agtaaaattt tttgataatg atacccttgc
    19321 agggcttttg gagcgattgg gcttgagata tgattagctt attggaacta actcagaaat
    19381 tgtcactatg tatcaaacaa ttcaacctga tttatattgt gaaattcaat gttaaggaaa
    19441 atatttaaat gaaaaggacg ttgactgggg cattcatgtg ggcagtatgg tcactgtcat
    19501 ctcatgcggc tagtatgcag ttcgaggtgg ataaattaat taatcggcta aaccctcatg
    19561 tgaacctggg gatagtagtg accgatctaa cctcgggcga gacgctatat aaacgcaatg
    19621 ccaatcgttt gtatattcct gccagcaaca tgaagctttt ttccgaggca gcggctctga
    19681 tggctttggg tccagactac caattcaaga atcaactcag tacgagcgcc aatcaattac
    19741 aacaaggtgt tttgcacgga aacttgtatt tacatctcag cggcgatcct tcgtttagca
    19801 gagaagattt aaagacgttg ctttcttcac tcaaggattg gaatatcaca accattcaag
    19861 gtaatgtgat cattgacagt agcctgatgt ccattcctgc ctatccccca ggctggctaa
    19921 cttcggattt atcttatagt tatggtgcgc caatagcacc tttgatggtt gattccaacc
    19981 gattaacaat cacggtcaac cccggggcta aagcaggcgc tcctgctatt gttgaagtag
    20041 atgatggcgg cggtaccatt aacctgaata atcaagcgac cacgaaggcg agtgagaaag
    20101 gatgtggtgt agggttttat ttggatcctg agaacaattt aacggtaaga ggctgtgttg
    20161 gattagggca atgggctgtt cagcaacgca tcgctataaa gaatcctttt gtttatgccc
    20221 aggggatgat tgtgagtgag cttgccaagt ctaacattaa attaaatggg caggttttgc
    20281 ttggaagagc tcctgctggt actttattaa ttgccactcg ctattcaaag ccaatttccc
    20341 aactgatggc agatacttta aagccttctg ataatttata tgctgatagt ttatacttgc
    20401 atgctgctgc caaaattaag ggtagtcctg tggattggaa gcaagcacag ccagtaatta
    20461 aaaacttttt gcagcaacaa acaggaatcg atttaaaaga ctcgaatttt acagatggtt
    20521 ctggattatc acgttataat ttggtaactc cagcgcaaac catggcgctt ttaaagttct
    20581 tgtatcaacg tttcccatta tcatacgaat acattgctgc tttacccatc tctggtcggg
    20641 atggtacttt gcaaaaacgg tttaaaaccc caaatcaaca aggatttgtg cgagccaaaa
    20701 ccgggacgat gacggggatg aacagtttat ccggttactt gtatactgct aatggccata
    20761 ctttggcttt tgctatgtat atcaatagat taccaggaaa accagctggg ccaggacgtc
    20821 cattattaga cgcattatgc acttatttct tgcagcaaag cccaacaagc agtcgactgg
    20881 cacgggtatt atctccccac agtcgcatta agttccaatt taatcctaca caaattgagt
    20941 tacagcgagt tcatcaagcc aaatggaggc gtttggaaac ggcagtgagg caggtcttga
    21001 gaggacagga tgtgaatgtg gtttaccggg gcaatgaatt aatcgtgaca gacaatcagt
    21061 ctaatgcgaa tagcgtttgg aaagctttac aatcaattgg caagaaatat tcattcgccg
    21121 tagctttgtc ttctaaagtg atgcctgtta caccatcggg aaaacctttg cttctttggg
    21181 tgcaagcacc tttatctgaa aataaggcag agagaacctg gataattcgg gaagcggtat
    21241 aatctgagtt tgataattaa aagaaagact agcctcatat tacaaaatgt aatgcggggc
    21301 tcttccaacg taacgttatc ttgagtcgtt tgggctgagg aggcatttat gctgtctcga
    21361 agccttgtat gagatttaat atttcgtgcc agggcttcga gacgatgctt atgcatctcc
    21421 tcagcctgaa cgaaccctgg atatagccag gctctcgtat aatccttatc tatttattgt
    21481 cgcgctgcaa acatgtctgt ggtcctgaac aactgatttt gaattgattt gagctgaagg
    21541 catcatcagg gattgagttt tgaatgtgct gttctgccca aaacacgatt taaatgatgt
    21601 gaagttatga taaggtcagt tgttatttcg aaccgtttgg gctgaggagg catttatgcc
    21661 gtctcgaagc cccttgtacg ggatttcata ttccgtgaca aggcttcgag gcgatgctta
    21721 tgtatctcct cagcctgaac agaccctgga tattggcagg ttctcgtaca atccttatcg
    21781 gtaaaactca tgttaaatag actgtttttt ctgcattcgg gctttgcagt attcaaggtg
    21841 attgtaacag tatttacgaa aactccaagg tcaaggcaaa aaatgttttt aatgcaagag
    21901 ttcagataaa ctaaatggcc gaattaaaaa catttttcaa caaagagatt gaggtttatc
    21961 gtaagtactg tgtaaaagag ctataattga gaactgctta atatcggtat aaattgattt
    22021 ggagtagtaa ttgaatttta gtattcgagt aattcttttg ttaacaggtt ttgtttcttt
    22081 agccttttct gcaccaaaat ttctaacaat ctctgatatt cattatggtg cagaaaatat
    22141 agcaaaggat gggcaggata ctggaaagga gtttttggat gtcacgttca aacgatttga
    22201 ggaattgtct caaaatgtag attttatttt acatttgggt gatctgccta ctcactcgtt
    22261 attttcgata cctaaaaaag aagaatacga acaagttgta tttcatggtt tgcatgaagc
    22321 gaatccgggt caaaagccca tgttttatat tacaggaaat aatgattcct tgcttggcaa
    22381 ttaccagcca ttttcttcag acaataagtc gccactcaat ttggctctgg attgggatgg
    22441 tgcttgtgct tattgtgatg ggttaattat tgatgatact catatgcgca aggatggcta
    22501 ttactccagt tatgtcatcc ccaataataa agagattatt ttaatagcac ttaattcggt
    22561 tcaatggacc aagacccctg tttttttacc aaagtaccct aatcaacaaa gggatgcctt
    22621 tgtacaatta ttttggcttg aacaacaatt aaaaaatcat cgtgcaaagc aattgttgtt
    22681 ggcgatgcat gttcctcctg gtacagccta taacggcaac cggttttggc atgacattta
    22741 tctggataga tttttgacgt tattagacaa atatcatcaa tcctatgatc aaatcaccat
    22801 actgttctca cactcccata tggaggaatt caggaaaatc agattatccg atggctcaac
    22861 tatttatgcg ttttctactc ccggaattag cagggcgcat cacaacaatc ccgggatgaa
    22921 aatttttgat ttagacaagc aaatgagggt cagaaattct actacttatt atacgtccga
    22981 tttgtatgag tggggtaatg agtattatca agccatgaat actcctgacg ccatttttcc
    23041 aaattgtcaa aataaaacga taccccagtg cctggacacc ttaagtccag agcaagtatg
    23101 caataatctg gaagtgggac tattttatgg ggtgaaaagt acgcgtgttc cctatcaggg
    23161 atgcattaaa acttaccaga ttaattaagt taggatttct ttgatcaggt aagtttaacg
    23221 agatgttcct tgttgtcttc aggttgtaaa tacgctgcga ctgctttttg taaggcagca
    23281 atatcatcct cgcttcttgt cgtcgccttg tttctaaaga aatcaattat tggattttgg
    23341 tgagttttta ttatttttga atggtcaggg tttaaggtaa atgcagagat taacccatag
    23401 atgttttcta ggtttccatg ttggcatttt atttcaaaaa taaaatgctt taataactca
    23461 cctttttcac gtcgttgatc atcagtggat tgacacatca attgtgctct tgaatggata
    23521 gcatttaaca tcaatacgat attttccgga agcttcttta ccggtttatc ggttttgacc
    23581 atggagtctg ttgtttttgc cagagcatca gcggtttctt tgtgcctatg ttttgcttga
    23641 agcggtggtt caaatcgaaa aactttatca tagtatttct ctttgaaacg ctcagctaac
    23701 caatcatgca ttgttgcagt cgggtgaaca tcatcccaga acatatatcc tttggctggt
    23761 gaaatatgtt ctttttgatc aacagggttt ttctgatttt ctttaaaaag atccgattca
    23821 acgtaagggg attttaactt gtctctatca aagccatatt gttcgggatt actgtaaact
    23881 tccttaaact gctcattaac atcaaagaca gagagattga caggaattcc caattctttg
    23941 tattttttga ttaattcaag agattttgtc tgcagttgtt gattaaagta ttcagtacaa
    24001 tcagatgcat tacgctgttc ttcagcattt tttctttgaa atcttggggt caatgagaga
    24061 ttgggcaaat tgaataaaac aaaatttctg tacccattat gaataagcgc ttcaatattt
    24121 tgaattcggt cgttaactgc tttctctgca gccgcacgag aaggcttgtc attggcggtg
    24181 atcaagtcgt tcgcgcctga ccactccaca actaatgttt cagatttttc aaggttggaa
    24241 atattgtatt ttttatcatc agccaataat tgagtccgtt ttcctcccaa agtagcgaga
    24301 atcaatcttg taaaaaacaa aaccaggtta aaggtaaagc tacaagagta gtcatgagaa
    24361 gttaatccac cttcgcaata gaagcgggca aatctttccc ctttaaacag aatatgattg
    24421 tcttcattta agctaaaaga gttttcattt tctcttcgtg ccttatcatt gatgagtaat
    24481 tcatcgccta tatccgcatt gtctcttgca ttattatgca atcttaattt tcttcggata
    24541 tgctctatct caaattgctc tgcagtggtc gcaccgacat aatcccccca aagaaaacca
    24601 ttagtgaatc gaccttttgg agatttgctt cttaatccac ttaaataact catggggata
    24661 aaacccagca gctcacgttt attaagcgtt cctctatcgg ataaactatc tcctaatact
    24721 acaaggtgtg tgattttagt tggtttttgg gccatgatat ttgcaagaaa aataacgtga
    24781 tcacattata cacaaaatga tttttaaatg gtatgttttg gactgatctt ctggtgaaat
    24841 ttttattgcg gaggacgtaa aatagctgaa tcaagtttgg tttaggaata ccctcaccta
    24901 atccacttgc aaaatgaacc aggatgaggg gagtttggct taaccaatta tattgatttt
    24961 atgatggtga tttgttcagg ccgtcattga ctcttcttct gattcattat cagcaagagc
    25021 acggatacgt tgtgcctcaa tagttaaaac cttgaagtaa tcataggaca tgtaaaaatt
    25081 acccttgtct ccaaattgct caccccatga gttacgtaaa gtaaataatc ctttgtgctc
    25141 ccggccattg tcatcaacag cgacggcatt gtcatcatat ccagttataa tcatttcatg
    25201 accgccaaaa aatgggcgaa gataaatatc acgagcaatt tcaggggtta gtacccaggt
    25261 atcgaattgt gttttattcg ttcctacggc acccataaca cctaaatcaa aatccagcaa
    25321 taataccgca aaagtaaccc gatctttttg attcaaagcg gtttttatat cattaatcgt
    25381 tttgttggtg tctgttctgt ctaatacagc ctgataaaca tccaggatgg gcgtgtaaat
    25441 aacaggatta gtctctggat cttcgctcat ttcatggaat tgctcaagcg acatggcatg
    25501 atcaggggta ggttgctcgt tgtctgggta ttcagttagt ccaccacatc ccaggttttt
    25561 ttgtttttct ttgctgacta tcccaaaatt ttccatttga cttaagacta tgcgccctaa
    25621 tgagccatcc caaccacttg gtgaatgacc gtttttctcc agatacagcc ctagttgtaa
    25681 ttggcacaat tggctgatgt agtcaccttt gtttaaagca gcatctatgg ccgcagtcgt
    25741 tgcaaaagtg acgcaagttc caaagcttcc ctggttcaga acaggtacgt tattcatacc
    25801 taattctact ttggatggga gagctgttga tgtggttatg gtattcggtt ttttgagtgt
    25861 aatgtctgtt tttctcgcaa gtgctttgat agcagaattt gacaactgca ttttaagcaa
    25921 tttgatttgt tgtatggcgg gttttgtgtt gagtgtttta ttttgcgggg cttttaatgt
    25981 ttggtttaac gttcctacta ctttgatatc ttgagcaaat aaattcccgc tcaatgccaa
    26041 agttaaaaaa agtaattttg aaacacgcat ctatcattct ccgttagtga tatggacttg
    26101 aaatggctgg caaggataac tgatgatgaa ataatattca atatatgttt aatataccca
    26161 ctaaataaaa aataaattca tattgggttt taattgtctt ccagggttgg gttgagtcgt
    26221 ttcatccagg acatgaataa gtgtgtcaga gtgagttctg atgttaacta tttattcgac
    26281 tggaaaattg aaataggtgt ctggataagg ttcatttttc agggtgaaat gccaccattc
    26341 atagtaataa ggtctaaaac caaagcgttt catgagcttt tgtagtaatt cgcgattggc
    26401 tttctggttt ttactcaact tggaataatc aatgttggct gacacatcca gacaatcaaa
    26461 acgagttcct gtatcgatcg aatcatcatt cagatagttt ggtgttttat cgtagcaacg
    26521 tgttaaagga tgattagatt ttttttctcg agaggctgtt agtttcacca gcgttaagtc
    26581 aagggtactg cctcgcgtgt ggccagaggt tagagcaata taaccacggt caaacaaatc
    26641 ctgttttatt tcacggggat aaaattcagg tttcattcga tgatctttgg cattgcggct
    26701 ccacttataa aaataatcca cagccctttg tggcctgtag caatcatata cttttagcgt
    26761 atatcctttg ggtttgatgt attcttccgc tttttttaat tgttgcgcgg tttgtctggt
    26821 gactatacat actccgcgtt tgtaacctgg gataggattt cctatgaaat tattatgggt
    26881 ggcatatctt atgtcttcaa tgatgtcagg tgctacatcg tgtaaataaa caaagccttt
    26941 gggaagcgaa aaactggccg tgcttatgag ataaagaaaa aaaagagcgc tgatttcttt
    27001 cattgttaga ttgttaaact cataaccctt agaagtttac tggcgtgggg gtgctttcgc
    27061 ttcgattatc atcctccatc gctgctgtta agtcaacttt cgaggtcata tctttgggtt
    27121 tttcaaactc ttgttttgga gtggattgtc tttccaagac agactctcgc gtcacaccta
    27181 attgttgatg aagtttggca ttcaccgtta aatgatcctt ttgttcggtt ttgtgttgtg
    27241 gtgaattttc tgatgccgct ttcataccct cgcgaacaat ggatttaatc tttccttctt
    27301 ctatcttgtt attaatagca tcaatagcgg taccaaaaag ataagtggcc gcaaaagtaa
    27361 cgccagcaac aatggcagca ccggctgcca caccaattcc caaggcggcc acagccaagc
    27421 ctgccggagg gaatagcaaa gtaagggcga caaatccacc agctgctagt aacccaagcc
    27481 cgagacctgc tttaattttt gtacccatat ttttggtaaa agcgttttca ggccccattt
    27541 cttttatttt ggcaaaatta gcgaccttgc caaaaaggcc attatcagcg aaattggctt
    27601 tatcctgaat ttcaaacttt ccgccggaaa cacccgtatt ggcagtatga tgaagggcct
    27661 gtatagtagt aagttcccga tcaagttgtt ctacattact gacttcttta ccatgtgtcc
    27721 ttcgatgatc cagaaattca ccagtgtata acccgtcctc actcattgct gtccataaag
    27781 cattcccaac aattttttgc gccaatcttt ggccacgatc attattactc ttacatcctt
    27841 tcgtattggc gtaatccagc tcgcaggaga gagaagccat taaggtttgc agcttgaaat
    27901 tatttttgcc atgatgccag gtgttctcat aatagagctc ttgagcttgc gtgaggtaag
    27961 cacatgaatt gtaaaagtgc tgcagtctgg atttggtttc aggatctgtt tctttattct
    28021 ggattacagg gcttatttgt tctttaagtt cttgtaaagc cttattgatt tgccctttgt
    28081 gttctgtgta ataagccttt cttaaggcat cgatttgatt atgtagttca taaatggctg
    28141 attcttgttt tttaatgctt ttttcatagc catcaacctg atttttcaat tgatccagtt
    28201 tggcttgatc ccatttccct tcgcctttct gatattcttc gaaatagctg aataatgctt
    28261 ctcgataggc tcctttcacc tcttttaagg cattttcttt ctcagtgatt tgttgattaa
    28321 ggtcgctgac gtctgggcct tttaataatg tgtgtaatgc gcctgctttg tcataatcac
    28381 ccaggttttg tgccactttg tctaaatttc tgatgacgtc atcagtcatt tgatttacaa
    28441 aacgcgcatt ttgatttttt gtgacactat tgtcagagag cggattgagc gctccaacct
    28501 gtctaaacca attcactccc caggaactca tacgcgcctg ataaccaacc gctgtttcca
    28561 cttctgtatt ggagccggtt tgaatggtga tttttgcttt ggagccatca aaagcatcca
    28621 tcatttgccg tacgtattca aattgttctt tttgattttc ggccgctacc ctttgtccgg
    28681 ctgttacaac ttgtgtataa cattccgtga cagataatgg attatgttct acatacagct
    28741 ttattaattg cgctcgtgct ttctccgcat caggaggaag ctcatcaggg cggtactctt
    28801 caggaatttt attccaaagg tcttcattgg tcattcggtc aatttgacgc tgtgccaggg
    28861 tttggatgac ttcttcctgg ttgattaagg tgaccgcttt gatagccagc tttttatagt
    28921 catcagcacc cttaaaatca gaatagggca tgcgtgcacc aggaccagaa aaactgtcat
    28981 ggtgaatagt cacggtgcca tcagaatgtc ttgtcccggc aatcatgcgc gccatactgc
    29041 tgttgcccag aaccaggtca gaacgtttat gacttgtagt gtcgtgatct ctgttgactt
    29101 cagattcatc cttgcccatt agtctttgtt ggcgtttggt gtaccttcca cacggaatgt
    29161 acataataaa ttgttcttcg ccttctttag agttgggcgc tttaaagcga tgtatcaagg
    29221 tatcgcgatt atgactgcga atattatgcc cttctttatc cagtgctttt aatttatgac
    29281 ctgaggcttt tgcgacagcc tgtgtgaatt gctgtaaact gccttcgact ttggccaact
    29341 gttccagaaa gtctttattg gcagagcttt ttttacttga aaacaaatcc gcttttgctt
    29401 tgtcggaagg aatggtttct gaaatggact ttttgaaagt ttttgccatt tcatcaatgg
    29461 cattttttct caaatccttc tcacctttct tatctttgtc tatcagagat ttggcagcgg
    29521 ctacaagatt gtctatataa ttattcgcct cttggatcac atcaggctgc cctgtaacag
    29581 gtctgccatg tttatcatat tgactgttca ccaccacgac ttgtttccca tccagcatcg
    29641 ggtctttgaa tacctgtctt tcgccgggat aaccgtaggc aagatgctga ttttgagaag
    29701 gaacgggttc cagatcactt aataaatgcg tgacataggt ttctatattt tcagtaattc
    29761 gtggcatggt ttattccata tcataacatt tattttatta tagctggcaa acattaacgt
    29821 aagattaata agtttttttg acacaaattt agcttgcatt gagtgattgc gtagggcttc
    29881 acttaaagac tggactgaaa aatagaattt agtactattc tcagaaaata gtgaagcctg
    29941 ataatttcct agtaaaactc aatagtggtg gtagtcacat ccaaaggctc cggatcatcg
    30001 acatctaaaa tgacaggctc aaccactgga gcggcaactg tcacttgttg gtattcaact
    30061 acttctgctg tagtacaaca gcaacctgca gttgttataa taacaacgat cagcattatc
    30121 catttcatag cgaaacctct cgtcataact taaccaaatt gtagattatt tgttcagata
    30181 ttgccaatgt tttatggatg cctttgcgtg tttgttcatc tgaagaagtt caaattcgtt
    30241 tgaaatgggt ttattctttg gagtgctttc cattgatgta ataaaggaat gccaaaattt
    30301 gggctacggc aatataaagt gctttgggta tttcctcatt gaggcgaact tgagacaaga
    30361 gcgctgttaa ttcgggattt tgttcgagag gaatgccatg ttctttggct gtattgataa
    30421 tttgctgagc aaataaacct tctcctttag cggttacttt gggaggagaa ttgccatcat
    30481 aacgtaatgc aacagcgacg ggtttctttc ttttcatatt tttatatcca ataaacgaag
    30541 gtttgtggca tcgatatgat tttcttccaa cccaacttgc agcttccatt ctcttaagtg
    30601 aagacccgat tcatagagcg tttcttccaa atccttatgg taatcattga ggagttgcaa
    30661 tgttgacgat tgctgagtat taaccttgat atcgatgttt ttagcgtaaa tcgaaaccgt
    30721 agcttgtatg cttcctaaat gggataaatt caaagcgaac gatattgacc atttagacag
    30781 ttgcataggt tctgccttgt gttgtttgat cataataggg attacatcaa tgccatcggg
    30841 ggtttttaaa ggaaaatcaa gcatgattag ataagcttct tgattctcct gcgataaata
    30901 attaatttga tttgtcgtga ttcgcgctaa tgcctgtgtt acctgctcac gtaaaatatg
    30961 gtgtaccgcc tctgttgata gtccaataag attcaatatc gtgtctttag ccagtggctg
    31021 agggatagct cctggtaaag gaagggctgc ttgctgaaga aaacctgatt ccaattcgtt
    31081 cggcagattg attgggagtt tactgtctgt gcctaaacgg tgtaataatt taaaacacaa
    31141 ccctttaaaa tccgattgta tttctcgggg tatctttcct tttaacaatt tggattctaa
    31201 gaaaacacca ctttgactaa tcgcttgcat aagttgatta ggtaattgag tcaaaacagg
    31261 gacgttgcct aaaatggttt tcataacctg attgatggga gccgataaat tattctctgc
    31321 catcaattga gtcagtgtct gtaaaagatt ggtagctggt gcttgttttg gtaaatactg
    31381 aagtaacgca ttttgcaata gagatggaag cggtgttttt tgttgcactt caaggatggt
    31441 ttcggggtgg ttcgctatga cttttacttc aaataactct cccggtgtaa aatgatgaga
    31501 tgcttttgcg ttgagatttt gcccattgat attgataaga acctgatcat tagacagagt
    31561 tgtgacaaca accgttttca gaatttgtcc tatataaagt tctgtcgccg gttttgctaa
    31621 tttgatttct tgtccaggag ggaatctggc actggaggtt ttgctcatct cgaccgacat
    31681 acaccatcct tatcatcagt tagactgctt tttcttatcg tcgtccccca ctggactgtt
    31741 tcgtaagttg tctaataagt atatactcat cgtcttaatt atcggcagaa ttatgaattt
    31801 ctttatagtt cgttgggaaa ggataccagg catggatata agagtaatca ttacacaaaa
    31861 tgtaattgaa atagccttat tcatctggtc attgcgcaat ttaaacaggg tgtggtgatg
    31921 ttagatagag caagtgtagt ggatgaacaa tttctgaaaa gagtgttgca aggggatttc
    31981 ccacaattaa gaagcagcat gagccccgat acagcagagt tggacaagaa aactgctata
    32041 gaattttttg actcacaaat taaatcccgg cttcttgata ttattgcgag acaattaaag
    32101 gaaaaaggcc tctcttttta tacgatagga agtagtggtc atgaaggcaa tgcggttttg
    32161 ggtcaggttt ttagagcgag tgatatggcg tttttgcact atcgcagcgg tgcctttttc
    32221 ttgcaacgag caaagcaatt acctggaatc gatggagtaa aggatatttt attgtcatta
    32281 gtggctgcgg caagtgatcc tatctcaggg ggcaggcata aagtctttgg cagcgtccct
    32341 ttaaatatcc cgccgcaaac atcgactatc gcatctcatt taccaaaagc tttaggcgct
    32401 gctttatcaa ttaccagagc gcgagagtta ggattgccaa gtaaactgac gcctgattcc
    32461 gtgatacttt gttcctttgg tgatgcttca accaaccatg caacgagcca agccacattg
    32521 aatgcttgct cctggataac ccagcaaaac tatccactcc ccattgtgtt catttgtgaa
    32581 gataatggaa tcggtatttc agtacctact ccatccagtt ggattaagtc atccgtttct
    32641 tctcgtccag gaatacatta cattgagtgt gatggattaa acattgcgga tgtttttgcc
    32701 aaagcgcagg aagcggacta tttggcaaga gtaaaaaaac aacccgtgtt cttgcacatg
    32761 cgttgtgtcc gtttgttggg ccatgccggt tctgatattg aatcgcaata caacactcag
    32821 gaagaaattg agcaacgaga agcaaacgac cctttattgc atacagcagg aattttgtac
    32881 agagaaggtt ggatgagttt acaggcaatg gttgagcttt atcaggacaa ccgggcttta
    32941 attgaagcca aggcactcga ggcaatcaga gaacccagaa tgagttctgc tgaagaaata
    33001 atggcttcaa ttgtcccacg aattgataaa aagcaaaaat actcattgcc agatgataat
    33061 aggcgagcgc aagtatttgc cggagcttat aatcaactca ccctaaagcg taatttatgc
    33121 cagcagatca attttgcctt gaccgatctg atgatgcagt atcctaatat gttgattttt
    33181 ggagaagacg taggaaagaa aggtggagtt tatcgagtta cagctgattt acaggctcgt
    33241 tttgggcaac gcagggtttt tgataccctt ctcgatgaaa cgaccattat aggtactgct
    33301 attggtttgg cacataatgg ctttattcct gttccggaaa ttcagttctt agcttatctg
    33361 cataatgccg aagatcaatt acgtggagaa gcatccactt tatctttttt ttcaagtggc
    33421 caatatcaaa accctatggt acttcgaatc gcctctcttg cttatcagaa gggatttggc
    33481 ggtcattttc ataacgataa ttcgatagcc gttttacgcg atttgccagg ggttatagtg
    33541 gcttgcccct ctaatggccc ggacgcagca aaaatgttga gaacatgtat gcgccttgcc
    33601 tatgaggaag ggcgggttgt cgtgttttta gagcccattg ccctctacat gaccaaggat
    33661 ttgtatagcc cgggagataa tgggtggtta tttgaatacc cgtcacctga tgaaatgatt
    33721 tctcaaggag aggttggcgt atatggggag ggggatactg ttattttaac atatgccaat
    33781 ggatattatt tatctcgcca ggcggaaaag gtcttgcgtg aagcacataa tatttctgtt
    33841 aagatcattg atttgcgctg gctcagcccc ttgccaaaag acgccatttt aaaagaaatt
    33901 gccaaggcaa aacgtatttt aattgttgat gagggtagac aaagcggctc aattagtgaa
    33961 ggattgatga cattattgat ggaagaggct tcgccacggt taaaaataaa gcggattacg
    34021 ggcaaagatt gcttcatacc attaggaact gcttggcagt atttattgcc aagtcaggaa
    34081 agtattatag acgcggtaat cgcattacag tcagataaaa gggagaagga aagtggacga
    34141 cttgttgttt cttgatgaac aattacatga tgacgagcgc atgatacgag atagtgtgtc
    34201 tcgttttgtt agcaatgacg taataccttt aatggctgaa tcttatgagc acgcccattt
    34261 cccaaaagag ctgataaaaa aatctgctga tctggggttg ttgggcttaa ctttacctgc
    34321 ggaatatggg ggtgcagaag cttcttatgt tgcctatggt ttagtatgcc aggaattgga
    34381 gcgaggtgat agcggtttgc gcagctttgt ttctgtgcaa agttctttgt gtatgtatcc
    34441 tatttttaaa tttggcagtg aagagcaaaa aaaacgctac ctgccagaga tggctgcggg
    34501 gaatattata ggttgctttg gattaactga gccagactca ggatctgacc cggccagcat
    34561 gcgtactcat gccaaaaaaa ttgaaggtgg ctggattttg aatggtgcta aaatgtggat
    34621 caccaatgcc cctatcgcag acatcgcaat agtgtgggca aaaacagagg cgggaattcg
    34681 tggttttatt gtcgatacaa aatctgaagg catgagttgt cctgaaatta agttaaagat
    34741 gtctttacga gcctccatta ccggggagct ggtttttgat aatgtttttg ttccagacga
    34801 gaatttattg ccgaaaagtg aaaaagggct tggagctgcg ttaagttgct tgagtcaggc
    34861 gcgttatggt atcgcatggg gagcaatggg cgctgccatg gcttgctttg atatcgctcg
    34921 ggattatttg ctggaacgca agcagtttgc caaacctttg gcttcgtttc agttgattca
    34981 aaaagatttg gctgatatgt atacagaaat tattaaagca caatgcctta atttgcagat
    35041 tgggcgttta aaggatcagc atcgtgagac accgactatg atttctctgg ctaaggggaa
    35101 tgcttgccgt gaagcattga aaattgcgag aaaatgtagg aatctaatgg gcgggaatgg
    35161 aattagtctt gagtatcatg tcattcggca tatgctgaat ctggagtcgg tcttcactta
    35221 tgaaggtacc gataatgtgc atactttggt cttgggaaga catataacgg gaattaatgc
    35281 ttttggttaa ggatttttct gcttttatcg agttagttct gaataccaca agataactat
    35341 tcttaatccg taatgattac ggttccagtt cctttttctt gcagaaagag gaactgttta
    35401 agcctttttg attttagagt tgagcgattg cccgccagat tatggtgctg aattaggaag
    35461 gtatggtcct ggcatggtta ttttatggat attcgatgta aaacggtttt atacaaacaa
    35521 ttacaggagt ttaatatgat taacatgaag ttaaaagcaa ctttgatagc ctgtttgtcc
    35581 gttctaactt taagcggtta tgcgaattca tcagaaaata aagaagccat tttacaacag
    35641 tgtcatgact tggcttcaac agtagcgtct ttggtttcca gccaggctaa aaaaacctgt
    35701 gcagaaaaat tggttattgc ttcaatacac attgatacag cggcggactg gattgtagag
    35761 gatgttcatt ctgcagcaaa acaagaatta gataatgcca tttattcttt gcaatatgct
    35821 gagctgaata gttgtaatcg ctatatacag atatctcatt ccaaactgga agcacaaaga
    35881 ataaaaagcc tattatagta atagaaaata atggttatat tttttgaaaa aaggtctctt
    35941 tgcttattgg gcaatgagac tttatgtcca actgaagcag cagtttagcc tgtcattaac
    36001 ttcatatcac ccgatggttt tttaagtctt ttcccagcaa ggggcagaag gtattcggta
    36061 aactaatcct tgccaaattt cttatctttc tatccctgct acacttaaat atagagaaga
    36121 ttatatttaa gggcagcaat atgattgagt tagagccaga accagacaca gtcctggatc
    36181 ctaaagatat tttgactgag gaaatgaagt tggaagggtc agataatgat atggatcata
    36241 accaattcac ccgtggtgat gaagtggatt tagtcggtga tggtgttccc ggatatgaaa
    36301 caacaggaca agatggaaca gatgatgaaa ttgaagagca aagagaagct cgctatactc
    36361 ctaccttgaa ccctaatccc aaaaatgtgc cttgatctcc gtaatgaggt tcaaagtgta
    36421 gtttattgta aattttttgc aaaattcacc aagttgccaa atgaaacatt cattttaaat
    36481 tatcatttgc ctgttagtaa ctccaaggtt taaaataatg gttgtggtaa agaaaagaga
    36541 agaaacgcaa aaagatgaac gtgcacgtgc aattgaaaat aatccctgca gtatctgtcg
    36601 ttcattagga ttaccttttt gtcgtggtca tggcggcggt tctgggggtg gcggatcgga
    36661 tagcgcttct gacgacaaag tggatgataa tgatcatcaa ttgctcgcac caaagaatcc
    36721 tgccaatgtt acaaacatag aacaactact attgcatagc ggcctatggc atttgccaga
    36781 ggatgaagat tttgtttttg aatttaaaga cccccttgct ttagtcaata tgactctgaa
    36841 catggagctt ggtttattgg tgttgcaagg caagcgcgag cttggcaatg aagagcagaa
    36901 tgctctggat gagttgtatg agatgattgc gaaggaattt aaccttttta aaaattcaat
    36961 aaaagaccca caggttcctc tggaaacaat tacgcttgcc agagagggta atagtttgac
    37021 gataaagata cccagcccta aatattatga tttgtttgtg caacaattga tggataaaaa
    37081 tttgttaccc agcaatacac tggctttgca acatcaaaac caatcagtaa aatatccgga
    37141 aaaatcgaaa gcgacaatgg aaaaagattt ggtaggggaa gaatataaat catccctgcc
    37201 aaatccattt gatattagcc gaggccctaa attacctgat tggatataat ttttcccagg
    37261 caaggatgag cggaaaaatt tctccatcat gctattctta attaaagtaa gttatggata
    37321 aggattatat aagaagcagt tgatctccag gagtcgttca ggctgaggga tgcataagca
    37381 tcgtctcgaa gccttggcac gaaacattaa atttcataca aggcttcgag acagcattaa
    37441 tgcctcctca gtccgaacga ttagagataa ccccctatct tatccatata atcaaagaga
    37501 ttaaaatggc cctgaaattt ttccaatgat acggatgaca taatatgacg gtacccgaaa
    37561 ttactttatc cagagtgtac tctccaccgg aacacaaaga agggctatgg atacttgtag
    37621 accgattatg gcctcgggga ataaaaaaag acagttttct tctggatatg tggctgaaag
    37681 acatagctcc aagtccggct ttgaggaaat ggtttcatca agacagtgag cattggcatg
    37741 agtttgcaaa gcggtatgct caggagttaa aagagaaacc cgaattgata gaacacgttt
    37801 tggcgttagc gagcacttca ccagtcactt tgttttatgc ggcaaaagat cttcaacata
    37861 atcatgcgct ggtacttcag aaagttctaa aatcgtggcc aaaaatacca gaaatcaagt
    37921 agggcctatt tgagcgaaat aaaactcaga caagccatga acttatactt cactcatgat
    37981 agtaaaccat aacccttgtt attttagcct tatttagata tcatgcctaa ccaatcgggg
    38041 cgtagcgcag cctggtagcg cactagcatg gggtgctagt ggtcgaaggt tcaaatcctt
    38101 ccgtcccgac caagcccagt aagggttata ataaatcccc attcactaat ataaaatctt
    38161 ggctacactt ctggctacac tttctggaaa tggtccaaat gagcgtaata aatattaaac
    38221 ctatttctga aatttatctt cgtgttcggg gtgagttaaa gttattgaaa attgctctga
    38281 taaataaaga cttaaaaaaa attatgcggc atagaaccac cttgcatagc ttaacaacaa
    38341 attttgaaat tagtttaaag cataatgaaa aaaatttact tatccattat aggattaaag
    38401 aagcatctaa gaatttattg atgcttgtgc aatccactct tcataccgca tcgcactacc
    38461 tttcgatgaa tttagggtgt ctatgagtgg cttccaaagt tgttttcgaa ttttttcatt
    38521 atatgttgaa ttggttgcat gtatcataat tgaccataaa tgccatttat aggcatcttt
    38581 tctcatagaa ttaatcaatc caagtctatg taatatgttt tttaattgat ttagaggttc
    38641 tccggttaaa agagatttag tttgtggttg caatttaatt gaaaaatttg cattgaattc
    38701 tttaactccc gtttcaaaaa tagtttttac tatttctgag taatctgagg aatttcgata
    38761 tttttggaat agttgtgcag gacttccact agccagaatt ttatattcaa tcttgatgtc
    38821 ttgagggtta aaactattta attgatcaaa atattccctg acagcttttt gcacgttata
    38881 tttaaaatca ttcaaattta tatcgatttt tcttggttca acaagcaaat taaattcatt
    38941 ttcagtaaaa tcgcatatta aatagtgtat gcttttattt ttggcatccc aataaaatga
    39001 agttcttatg tccatatttt tctccaagag ttaaatataa tatagaacaa taattaatca
    39061 ctttgttgtt gagttacagt attaagcccc taagaaaggc ttaatgataa gaaaaatgag
    39121 ggtaaattcc aaatgtatct tgattccaac caaattgtat tctcaccgtc agatctgact
    39181 cagtttatgg aaagcccctt tgcatcatgg atggaacatc ttgcaataac tcatccaaac
    39241 ttagtgccta ctcctgatga aagtgatgaa ttgttgagtg ttttgcatga catgggaaat
    39301 caacatgaat cagaagtatt aactgcattt gaagctagag gattaacgat tgctaatttg
    39361 cgcaagcgga ctgattcata tcaagcaact attgatgcta tgaaaaatgg ggtagatgta
    39421 atttaccagg cgcatttgga attgttaccg tttagagggt acgccgattt tttgattaaa
    39481 gtccaaggta aaagtatttt tggagattat tgctatgaaa tttgggatac taaattagcc
    39541 aagtccgtta agacttattt tctggtgcaa ttatgttgtt atgctgaaat gcttgctgta
    39601 atgcaacaaa caactgccga gcatatcact attgttttgg gtaataagga acaaaaacga
    39661 ttcagggtta atgattattt ttatttctac caaaatctta agcacaaatt tttgtctctg
    39721 caccaagaat tcgatcccgt taaatgtctt gatccggcct catcaaaaag ttggggaaga
    39781 tggagcatac atgctgagaa tctactattg gaagcagacc atctgattca ggttgctacc
    39841 attacttctg gacaaatcaa gaaattgaat aaagcaggta tcgataccat gactgcttta
    39901 gctaacgcta ataataaaaa tgtaaaagga ataaaacctg aactatttga gcggctaaaa
    39961 gctcaggcca aaattcaaaa agagagcatt ggaaaagata ttcctgctta tcagttaatt
    40021 gataatgaaa atggaaaaaa acagggattg gctttgctac cacctaaatc aaaaaatgat
    40081 atcttttttg atatcgaagg gtttccttta gaagatggag gtttggaata tctttggggc
    40141 gtaacttatt ttgatgataa tagtcagcgt caatacatgg atttttgggc acataataaa
    40201 gatcaggaaa aagaaagttt cagagcattt attgaatgga cttaccaacg atggcagcaa
    40261 gatccatcca tgcacatata tcattatgca agctatgaaa ttactgcttg ccgtaaacta
    40321 ataagcagat atggcgtgtg tgagtatgaa gttgatcagt tattacgtaa cgaagtattt
    40381 gttgatttat acaaaatcgt aaaaggcgcg ctattaatag gagagccgcg ttactcaatt
    40441 aaaaatgttg agcatttata ccgctccaaa cgagatacag aggtaggctc tggtggagat
    40501 tcagtagttg tttatgaacg atggcgagaa aatcctgatg gtaatacttg gcaaacgtca
    40561 aaggtattaa atgatattcg cacttacaat attgatgatt gtaactctac ccaggaattg
    40621 gttacctggt taagagaaaa gcaggaatcc agtggcattt gtttccttgg caaaacagaa
    40681 ttagttgagc ctgagattaa agaagaaatt aacgaacgca ttaaacttcg tgacaacttg
    40741 cttgaacaag cttcacaatt gaaaggtgag gatcaggaac aattatcaaa aattaattct
    40801 gttatggctt ggtcaattga atttcataga cgtgagtcaa aacccgtttt ttggaggatg
    40861 tttgatcggt taggattaag tgaggaagaa ttacttgagg atattgattg cttggcctat
    40921 tgtcagcgaa ctgacaaatc gccgtataag ccaacgccta aagcccgcaa cttagtctat
    40981 gaatattcgt ttgatccaga tcaggaattc aaaggtaatg caaaagagta ttacttgtta
    41041 ggctgtgaga caccagatgg taaaaacata aaagctgctt gccacgcgga aggcagtgat
    41101 ctggagaatg gaattattgc actgcaaata aaaagtgaac ctgatagccc tattacctta
    41161 attccaaacg aatatgttaa tcctgatcca atacctcaag ctattacaaa acaggcagag
    41221 gcatttgcaa aaggagcact aactcatact gttataattg attttttggg taaatctatc
    41281 ccaagaatta aaggacatat gtccggtcaa gcaatagccc ccagccatga tccaaatcaa
    41341 cgattgaatg aaattattga ggcagttact aatttgaata atagctatct gactattcaa
    41401 ggcccaccag gtgctggcaa gacatataca ggtaagcatt tgattgctga actgattaaa
    41461 aaaggtaaaa agataggcat atcttccaat agccacaaag ccatcaataa tttattaatt
    41521 aacactgccc aatattgcca taaagaagga attacaggac attttgcttg tacacgcaat
    41581 actgactctg ccattgacga tttgaagatt agtgtgctgg aaaataaaga tattgctggt
    41641 tttgtgcaag caggccgtgt cgtaggaaca actgcttggg gcttttccag agatgacctt
    41701 gaaaatgggt ttgattatct ttttatcgat gaggcagggc aagttagtgt tgcaaattta
    41761 attgctatga gcagagcaac agccaatatc atcttgatgg gtgaccagat gcaattgggt
    41821 caaccttctc aaggtagcca tccagaggac agcggattat ccattctcga ttacctgtta
    41881 cattcgaccc caactatccc tgattcaatg ggcgtatttt tgggaacaac ctatcgaatg
    41941 cactcggcag tcaatcaatt tataagtgag gcagtatatg agggtaaact tgaaaccgct
    42001 ccagaaaatg atgagcaatt gataactatc cctattggtt ataatggtat tttaaacaag
    42061 gaggctggaa taataactgt accagttatg catgaaggca atacacaagc cagtgatgaa
    42121 gaagttgaga aaattgtttc tttagttcat gaattattgg ggcggacttt taataccaaa
    42181 aatggtaaac aaagaacaat tgattgggaa gatattcttt ttgttgctcc atacaattat
    42241 caggttaata aattgaaaaa agcccttgga gataaagcca gagtaggcag tgttgacaaa
    42301 ttccagggac aagaagcgcc agttgtattt ttaagcatgt gtgcaagcag tgctaatgag
    42361 tctcccagag ggttaaattt tctatttgat aagaatcgca ttaatgttgc agtatcaagg
    42421 gcacaatgta tggcagttat tgtttattct ccagcattgt tagattctgt accaaataac
    42481 atcgaacaaa tcactatgat gaatttattt tgccaattag tgaaagactg atactttgtt
    42541 tgattgcaat gaaaacaagt tatgaaataa ataaccattt tgtggttttg tatagatcat
    42601 ggtgtaaaaa atgtcacctc aacttaattg ccttgatgag ataataaatc tataatcgga
    42661 atctgt
//
LOCUS       DACVWI010000005        42279 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.005, whole genome shotgun sequence.
ACCESSION   DACVWI010000005 DACVWI010000000
VERSION     DACVWI010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 42279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42279
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.005"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            29..1126
                     /locus_tag="JBH85_00870"
     CDS             29..1126
                     /locus_tag="JBH85_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HAU0944742.1"
                     /translation="MTIAILSTGDEIIHGDTLNTNAHYIAHALCSEGLPLGLQVACSD
                     KENEIIDSLNFLTQHHDILILIGGLGPTKDDITRFALAKFTKEPLLQHADALDHIEKK
                     ANIAKISLNQGNLQQCLFPANARLFPNPYGTAMGCSYSWKGKVFILLPGPPRECLPMF
                     NQDVLPLLLQTSRHSNKQILRWRVFGLAESEIAQILEEALEGLDCQTGYRLETPYLEF
                     KVRCKRELIEKITSIIDPILAPHIISSLETKASDQLRSLILKNNEPITIIDEITGGLL
                     QSLLVKPENYHLLNFHNLNRTRLYFHCSGLEDYWSQQAPQGTTKLIIHYSNQMQEGRE
                     THQIPYRSAMVVHYAAEWLSFRLFHLINQLH"
     gene            complement(1085..2110)
                     /gene="obgE"
                     /locus_tag="JBH85_00875"
     CDS             complement(1085..2110)
                     /gene="obgE"
                     /locus_tag="JBH85_00875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096654.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HAU0944743.1"
                     /translation="MKFVDEALIKVEAGKGGNGCLSFRREKFIPRGGPDGGDGGDGGS
                     IYFEASSDLNTLIDFRYTRQYKAENGQSGMGGNCTGKKGDDLTIKVPVGTMVYDADTG
                     ELLADISQPGIPVLIAQGGFHGLGNTRYKSSVNRSPRQTTPGSPGESRNLRLELRVLA
                     DVGLLGLPNAGKSTLIRAVSSSKAKVADYPFTTLHPGLGVVRVSPYKSFVMADIPGLI
                     EGAAQGAGLGHRFLKHLSRTCVLLHVIDIAPLDGSDPVADAKAILNELTQYNPDLLNK
                     PRWLVLNKIDMLPDEKEREEKIQSIIKGLEWKDKVFSISAIESKGTQELCYALMQLID
                     EMKESEA"
     gene            complement(2325..2603)
                     /locus_tag="JBH85_00880"
     CDS             complement(2325..2603)
                     /locus_tag="JBH85_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HAU0944744.1"
                     /translation="MAHKKAGGSTRNGRDSNPKYLGVKRFGGQFVNAGEIIVRQRGTR
                     FHPGPGVGCGRDHTLYALVEGLVQFTTKGEKNRKYVTILPEQREEAAS"
     gene            complement(2616..2927)
                     /gene="rplU"
                     /locus_tag="JBH85_00885"
     CDS             complement(2616..2927)
                     /gene="rplU"
                     /locus_tag="JBH85_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HAU0944745.1"
                     /translation="MYAVIKTGGKQYTVKEGDVLKIEMLPENVGNEIKFSEVLMLVDG
                     DKVTCGTPFVAKATVKAEVLDHGRHKKVKIIKFRRRKHHMKQMGHRQYYSQVKITAIG
                     K"
     gene            3170..3829
                     /locus_tag="JBH85_00890"
     CDS             3170..3829
                     /locus_tag="JBH85_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HAU0944746.1"
                     /translation="MSTIQLEAQSRTDMGKGASRRLRRLENKVPAVIYGGSKKPMAIH
                     FSHNKVIKALETESIYSSVFDITVDGKVEHVILKALQRHPYKPIVLHMDLQRVSSKDI
                     LVKLVPVHFINEEQSPGIKAGGIVQHTMTQVEIRCQAKDLPEFIEVDMSKVGMDDVVH
                     LSDLKLPKGVQLTVDVADGSHDAPVVSIHAAKVSSTELEETPEVPASAVPTTDQGESA
                     E"
     gene            3948..4517
                     /locus_tag="JBH85_00895"
     CDS             3948..4517
                     /locus_tag="JBH85_00895"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HAU0944747.1"
                     /translation="MVIKLIVGLRNPGSAYEQTRHNAGAWLVTALAQRHNSHFKIDKK
                     MQAELTEIDINNHPCRLVLPLTFMNHSGQTTRIISQFYKIEPGEILIVHDELDLPVGR
                     IKLKTGGGHGGHNGLRDITAQLGTGEFHRLRIGIGHPGHKDLVHQYVLSRPSMHDRQQ
                     IYDAIDRGIAIIPIVLSGDMARAMNQVNA"
     gene            4536..5627
                     /gene="ychF"
                     /locus_tag="JBH85_00900"
     CDS             4536..5627
                     /gene="ychF"
                     /locus_tag="JBH85_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HAU0944748.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNVGIV
                     TVPDSRLDNLSDIVKPQQVLHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAH
                     VVRCFDNSDVVHVEGRVDPLSDIEVINTELALADMETLEKSLLKVGKNSKSGNKEAIF
                     ELKTLEKIKAHLDAGYPVRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYENNPL
                     LDKVQALASQENASIVALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYEL
                     LGLQTYFTAGVKEVRAWTIRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQ
                     GAKEAGKLRLEGKEYIVCDGDVMHFRFNV"
     gene            5988..7103
                     /locus_tag="JBH85_00905"
     CDS             5988..7103
                     /locus_tag="JBH85_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAU0944749.1"
                     /translation="MSLLKKTREQDYSILVTTQDQQRKRHLLNVISIELLILGLLLII
                     TNLCLLRAWLIITMLIVGIFILLGNLILIKKNFNLALSGHILNILVLSIIIGGNLIVG
                     KTTMSYLGWFYVSPIVAFATLGLTGLVVYGLLAIGAMFLFIFEFYIPIYSISQEYVFF
                     LDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLIADKEKFHYLSHHDSLTNLP
                     NRSYFHAHLQTLLENTDTKKEAITLYFMDLDKFKPINDEYGHEFGDQLLLLTSKRLQS
                     CFRKNDFIARLGGDEFTAIIVHKPHDQIAEALTLRIEQEFEQPFVINGQTIHCTISVG
                     IANYPRNAKNAEDLLKWADKAMYDNKRKKYQTLKQTS"
     gene            7237..8205
                     /locus_tag="JBH85_00910"
     CDS             7237..8205
                     /locus_tag="JBH85_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HAU0944750.1"
                     /translation="MTIDRIRALVSEDFNAVNNLIIDKIQSQVGLIQDLSQHIVESGG
                     KRLRPLVVLLASNACGYKGKDHISLAAMVEFFHTATLLHDDVIDESTLRRGRQTANSI
                     WGSKASVLVGDYLFTQSVNLMVEVGIKEILNLLANTSHQITCGEVKQLANRHNPALTL
                     DDYFDVIRAKTALLFAAAACIGPILTNAPIELRNSLYNYGLHLGNAFQLIDDALDYCS
                     DAATLGKNIGDDLADGKATLPLIHALQNGNATQQQQIRESLMKGSLSHLPDILIAIEQ
                     TEAIPFTKRIAAQEVDSALSALEILPDSVYKEALVDLAKFALERNY"
     gene            complement(8232..8447)
                     /locus_tag="JBH85_00915"
     CDS             complement(8232..8447)
                     /locus_tag="JBH85_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944751.1"
                     /translation="MLLQIRDFIYREGVVSTQQLSREFHLDLTALQPMLDLWVRKGAI
                     RKCQGGANCKTACFKCRTPPDYYQSVV"
     gene            complement(8428..10683)
                     /gene="feoB"
                     /locus_tag="JBH85_00920"
     CDS             complement(8428..10683)
                     /gene="feoB"
                     /locus_tag="JBH85_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HAU0944752.1"
                     /translation="MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFL
                     LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL
                     TSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQS
                     LLHCSQKIKPLKLSLSVAAQQILNDLENQLISKGYKNSFAYYFSRRLAEGDTLIGEKA
                     FTESLLIKLQETEQNLDVLLADARYQKIHEIVTLVQKKHSDASEHFTAKLDKLVLHRF
                     LALPIFFAMMYLMFLFAINIGGAFQDFFDISTETIFVQGSGWLLQQLHAPHWVIALVA
                     NGVGKGINTTITFIPVIAAMFFFLSLLETSGYMARAAFVVDKAMRAMGLPGKSFVPMI
                     VGFGCNVPAIMAARTLDSERDRLLTVMMSPFMSCSARLAIYAVFVAAFFPSGGHNVVF
                     SLYLIGILMAVFTGYILRKTTLKGHASPLILELPAYHRPSLRRLLRETSMRLRFFVYR
                     AGKLIIPICVILGGLNAITWGGGISSGEANTDSLLSIMGQWITPLFAPMGIHQDNWPA
                     TVGLLTGMLAKEVVVGTLNSLYAQVGHVGEIAAAHFDFWGGIKAAFGSIPANLSELGS
                     ALWNPVSASAADSELSQSVYGIMSRRFDGAVGAYAYLLFVLLYIPCVSTMAVIRQEAN
                     KRFMWTSIVWSFVVAYATSVVFYQGAKFLDHPQQSMVWILAMSLSLLFVLAVFRYSQY
                     GMGRQNAAANT"
     gene            complement(10680..10907)
                     /locus_tag="JBH85_00925"
     CDS             complement(10680..10907)
                     /locus_tag="JBH85_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HAU0944753.1"
                     /translation="MQISELKQGDKVRLVSFGATDMQYRRRLLSLGITCGVEFSVVRM
                     APLGCPVQIEVRGTFLTLRKDEASQLVLEHL"
     gene            complement(10996..12087)
                     /locus_tag="JBH85_00930"
     CDS             complement(10996..12087)
                     /locus_tag="JBH85_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HAU0944754.1"
                     /translation="MPVMSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSD
                     SWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRR
                     LQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNT
                     RPDELYLNGVHRERFIPAIEIIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQE
                     AMEKQFALITREEDCKGFITVQNRDIPYIKYGTRSIWFAFDVICNFPRSQLDYLEIAD
                     RFDNVFLSDVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVPAEELYVKGEMKET
                     FKRTLSRLIEMQSVDYLSRHPRRLVKEML"
     gene            complement(12075..12737)
                     /locus_tag="JBH85_00935"
     CDS             complement(12075..12737)
                     /locus_tag="JBH85_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944755.1"
                     /translation="MLFTDKLNTPGEHELMLEGLVGPLETVLTVPEDADTRYVAFLGH
                     PHSLQGGTMNNKVVTTMARVFKELHIPSVRFNFRGVGQSGGHYDNGIGESEDMRKLVR
                     QWHSEQPQAQNIFAGFSFGSYVAYRTASHCEHALLITIAPPVHHYDYKEFEPPPHPWL
                     IIQGKEDEVVPFELVSEFASQSSQVLPVIEFVETGHFFHGKLLILKEKLMDAVRDQVC
                     LS"
     gene            12896..13762
                     /gene="panB"
                     /locus_tag="JBH85_00940"
     CDS             12896..13762
                     /gene="panB"
                     /locus_tag="JBH85_00940"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HAU0944756.1"
                     /translation="MIHETGTCITIILIYSRRILLFRENGMKIHDFKIKKQEQKKISM
                     LTCYDYPSACIVAESNIDCVLVGDSVAMAVHGHPTTIMATIEMMELHTQAVARGLGKQ
                     FLITDLPFLGHKSSQGHTVENVKRLLQAGAQAVKIEGADKDTCQTISHLVNAGIPVMG
                     HIGLTPQSIHQLGGYKVQGKNSEQAETLLQQAATLEQAGCFAVVIECVPQELAKTITD
                     SLVIPTIGIGAGPGTDGQVLVWHDMLGLQTSFNPKFVKKYFRAKDHFIEALNSYVQQV
                     QQMHFPANEHSF"
     gene            13774..14532
                     /gene="panC"
                     /locus_tag="JBH85_00945"
     CDS             13774..14532
                     /gene="panC"
                     /locus_tag="JBH85_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HAU0944757.1"
                     /translation="MQIFHNLNEWIHFRNTLSPDLSLGFAPTMGNLHAGHASLFLASS
                     KENHYTVSSLFVNPTQFNNPDDYKHYPRTVDADLELMTQNGVDFCILPNENEIYTDGY
                     AYQVQENRLGQLMEGKHRPGHFNGVLTIVMKLFNLVKPTRAYFGEKDYQQLLLIQGMV
                     KALFMDIEIKSCPTVREKSGLACSSRNNRLTPSQREIADEFAKIFHQNKSSAMISKEL
                     EALGITVEYIEEFQGRRFAAVKIGDIRLIDNYLL"
     gene            14529..15062
                     /locus_tag="JBH85_00950"
     CDS             14529..15062
                     /locus_tag="JBH85_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAU0944758.1"
                     /translation="MIQTNWCVITGGPSSGKTTLINHLAELGYKTAPEIARFYINQLL
                     SHDKKTLQEIKHDILWLQRKILNIMLRRERNLPKKDLIFFDRGTPDSIGYFRFHHLDE
                     THVVRACRYLRYKKIFFCHPLPVVPDTIRDEDDVTAKKISDCIYNAYVGLNYPVIELP
                     ATSIKERLEIILSHVDT"
     gene            complement(15065..16480)
                     /locus_tag="JBH85_00955"
     CDS             complement(15065..16480)
                     /locus_tag="JBH85_00955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HAU0944759.1"
                     /translation="MFKKILVANRGEIALRIVRACKEMGIAAVTIHSEVDRFALHVKR
                     ASHSHCLSKKPLDAYLNGRRIIECAKVAGCEAIHPGYGFLSENAEFAEDCNKAGIVFI
                     GPSAPVIATMGSKIAAREAMIKAGVPTIPGSKGNLETIDDALHCAETLGYPVMLKATF
                     GGGGRGIRLCHDASQIKQQFARVQSEAEKSFGDSHIYMEKYIANPRHIEVQILADHHG
                     TVLHLFERDCSIQRRHQKLVEIAPSPQLDEATRQVLLGYAVKAAKEVGYTNAGTVEFI
                     LDKNNRPYFMEMNTRLQVEHPITEQITGIDLVQEQIRIAAGERLTISQEQIKYNGFAI
                     EFRINAEDPQNDFLPSFGRITRYYAPGGPGVRTDSAIYTGYQIPPDYDSLCAKLTVWA
                     FDWPSVLRRARRALEEMRMFGVKTTIPYYLEMIKSEEFQKGVFNTGLVEAHPEWLKYS
                     NKSLPQHKAAVIAAAIALHKT"
     gene            complement(16473..17189)
                     /locus_tag="JBH85_00960"
     CDS             complement(16473..17189)
                     /locus_tag="JBH85_00960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HAU0944760.1"
                     /translation="MYSSNYIYQHDDLELHGFLAHEEGIKQSRPAVIVAHDWSGRGEF
                     ACLKAKQLAEMGYIGFALDMYGQGQIGSNNDEKMALMQPLYSDRSLLRGRLYAALEAI
                     KSISVVDNNRIAIIGFCFGGLCALDLARSGADIRGAVSFHGLLNKPENLASGRIKAKI
                     LALHGYDDPMAKPEQVHAFCQEMTEANVDWQMHMYGQVKHAFTNPQAHDEHLGLIYDE
                     VAARRSWQAMSQFLQEIFNV"
     gene            17456..18337
                     /locus_tag="JBH85_00965"
     CDS             17456..18337
                     /locus_tag="JBH85_00965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0944761.1"
                     /translation="MRNVAMMTDSLIHIRDLLHAQFCYQMFITPIHLPIDKKYREFAK
                     MACEFIEGRRDEIIHREYPRHHVLHRFTPASKPNGKKILITHGWMSRAAYMVRLIRLL
                     HKEGYEVYAIDFPAHGEAKGIQLPWTDAIAIIKETINQFGPFYGLVGHSFGGSMILNT
                     LNLAGQLPEWQLNHKPERAILIASPTQMRTPVNKIARRFKLSGQAYLQLRQLIRQQAS
                     VDPERIRLSHFISQAPDTYFLCIHGELDATINPKESINFCKYYKNARLSLLPDADHVS
                     VLMDERVEQIALDFLNR"
     gene            complement(18471..19349)
                     /gene="rpoH"
                     /locus_tag="JBH85_00970"
     CDS             complement(18471..19349)
                     /gene="rpoH"
                     /locus_tag="JBH85_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HAU0944762.1"
                     /translation="MLMTGGSSMSQQLQLAAMNLPVGSLDSYIHRVNQIPMLTLEEEI
                     AYAERFHSEGDIEAARQLVLAHLRYVVRVARGYLGYGLPLSDLIQEGNVGLMKAVKRF
                     DPKMGVRLVSFAVHWIKAEIHEFVLRNWRIVKVATTKAQRKLFFNLRQMKNRLGWFSN
                     EEVDAVAKDLGVSREDVLLMEQRLNVMDSSYDAPDVDDNDDAYKAPERYLFNVNDDPA
                     VLLENEDTGDQGREKLLFAMEQLDERSQDILQQRWLAEEKLTLHDLAEKYGVSAERVR
                     QLEKNAMKKIRQYMEG"
     gene            complement(19622..20551)
                     /locus_tag="JBH85_00975"
     CDS             complement(19622..20551)
                     /locus_tag="JBH85_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HAU0944763.1"
                     /translation="MLKRSQSLLAYHLQAAANSLNLFCRKPIATMMTVIVIAIALALP
                     TLFWVFTDNLSELTNRWQRGGHISLFLKPSLPEAEQTSLLEKVRTTEGVGQANIKSAA
                     DGLSELTQQEGMQDIMRYLPENPLPAVIEVVPALVIDSPAKLDLLSRKLQAFPQVALA
                     KLDMEWINRLHAILGFSGKAANALMALLALAVVFIIGNTLRLDIHNRQEEIKILKLIG
                     ATDPYIIRPFLYSGIWYGAAGALLAIFLVNIFILTLGVAVNQLANVYQMHYPLACLSL
                     RQILLLVLFAIILGWLGALLSVKRQLASIEPYK"
     gene            complement(20545..21231)
                     /gene="ftsE"
                     /locus_tag="JBH85_00980"
     CDS             complement(20545..21231)
                     /gene="ftsE"
                     /locus_tag="JBH85_00980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HAU0944764.1"
                     /translation="MTQRNLLVRYSMMITFDQVSKRYPGGFEALSQVNFSLQKGEMVF
                     LTGHSGAGKSTLLKLIALLEWPTSGQLTVNGLKLNHLKKRDVAAHRSQLGITFQSPQL
                     LNDRTVFDNVALPLQIQGVAYPMIAKRVHAALDMVGLLSKEKMLPVHLSVGEQQRVGI
                     ARAVVHKPALLLADEPTGNLDPKLSSEIMKIFEQFNQVGVSILIATHDLALIAGMKHR
                     IVMLKGGRLC"
     gene            complement(21182..22288)
                     /gene="ftsY"
                     /locus_tag="JBH85_00985"
     CDS             complement(21182..22288)
                     /gene="ftsY"
                     /locus_tag="JBH85_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HAU0944765.1"
                     /translation="MIEFHIFKELYTKMIKWFKRNQNSEPNLDAEEQQDHAKSSMESR
                     LEEPQELTVKEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETL
                     LISADLGLDTTQDVLKQLNEGLARKQLSNGEAVYLTLKTNLQTILSQEEKPLSIETED
                     GSPFVILMVGVNGAGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNG
                     IPVIAQHTGADSASVIFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQK
                     LDPKAPHETMLVLDASIGQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDL
                     GIPFRYLGVGEGIEDLRPFDAAQFVSAIFDDDHI"
     gene            22312..23637
                     /locus_tag="JBH85_00990"
     CDS             22312..23637
                     /locus_tag="JBH85_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAU0944766.1"
                     /translation="MHKLLISLMMLLSFQAFSQVQEYTLNNGLKVLVKEDHRAPVVVS
                     MIWYNVGSADEPVGITGVSHAIEHMMFKGTSKYPVGVFSKTIAALGGQENAFTNNDYT
                     AYYEKLDAGHLATSFELEADRMNNLLLNSEEFAKEIKVIQEERRLRTDNNPQALAFER
                     FLATAHLTAPYNHPVIGWMNDLKQMKVEDLKKWYESYYAPNNATLVVVGDVNPEKVHA
                     LAEHYFGSIAKRPIASRKPQQEPSALGKKMVYINAPAKLPLLLIGYTVPSVKTAKNNW
                     EPYALEIIAGILDAGESARFAKHLVRGNQVATGAEAYYNLYSRYQSQFIVYGAPSQDH
                     QIKDLEKALITELEALKKAPVSNQELQRVKNQIIAQKTFEKDSIFGQAMELGLLETIG
                     LGWKNTETYTKAINEITPEQIQQVAQRYFQENNMTVAELKPIRQEEVRP"
     gene            23634..24938
                     /locus_tag="JBH85_00995"
     CDS             23634..24938
                     /locus_tag="JBH85_00995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAU0944767.1"
                     /translation="MSVLRAFIISFSVIFSHNLFANSFKTEKWQTKNGVRVVFYQAME
                     VPMLDISLAFAAGSAYDGKYFGLSALTTNLINQGNSGKDATNIAEALADTGAQFNAET
                     SRDMVVLSLRTLTSKEALQQSTKTFSQIISHPDFPKEAFAREKDQLLMAVEQTEESPD
                     DVAIQNFFKTLYQEHPYAHPVHGTVESLNAIKENQVIDFYKKYFVAKNGILVMVGAID
                     SSQAHQLAEQLTQDLPAGEPAPTIPKASQLADAEKINVPFPSSQTVVRLGQIGIDHHN
                     QNYFPLMVGNYILGGGTLVSRLGTEVREKRGLTYGIDSQFVPMLGEGPFIISLSTKNS
                     EARNALHITQDTLIKFIKNGPNQEELASAKQYLTGSFPLSLGSNTNIANLLLRMAFYH
                     LPDNYLDTYVAKINAVTDAEIKQAFQQQVNPEKLLLVTVGQS"
     gene            24935..25480
                     /gene="rsmD"
                     /locus_tag="JBH85_01000"
     CDS             24935..25480
                     /gene="rsmD"
                     /locus_tag="JBH85_01000"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HAU0944768.1"
                     /translation="MKQVIRIIGGLYRGKKIHFPDVDGLRPTPDRVRETLFNWLMNDI
                     KNARCLDAFAGSGALGFEAYSRGASHVVFIEQSPKAHASLQNTIRQFDTPKLHLIKTD
                     TLNYLKQSTEQFDLIFLDPPYALNYVPQCLDHIITNNLLVKGGLVYIESSSPIEVKTE
                     LWKQLKLKQAGQVIYGLFEKL"
     gene            25555..26046
                     /gene="dotD"
                     /locus_tag="JBH85_01005"
     CDS             25555..26046
                     /gene="dotD"
                     /locus_tag="JBH85_01005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system lipoprotein DotD"
                     /protein_id="HAU0944769.1"
                     /translation="MNNNKIVIMFIFSALLAGCAGTMKFKKPPINNPSDDATIKLAEA
                     AVSVSDSMLEMAKVEKVITPPSKDNTLTIPNAYNLQARASVDWSGPIEELTARIAKAA
                     HFRFRVLGKSPSVPVLISISTKDESLAEILRDIDYQAGKKASIHVYPNSQVVELRYAK
                     IYS"
     gene            26027..26938
                     /locus_tag="JBH85_01010"
     CDS             26027..26938
                     /locus_tag="JBH85_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein DotC"
                     /protein_id="HAU0944770.1"
                     /translation="MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTR
                     AQKKQKMGKIREMALKETALSVGAQAGLAWRAKIIDEQLNKQARNLDAIYDFNSLVLE
                     HNILPPVLLEGRNTLNLADAQSIRISDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEA
                     PNVTLLPKTKAEKEIWCIYTERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAM
                     NMVSPPYVSHTDLGVTGDGSEIHIDDRVLRITALPELNVNSAEWRAAVAKDENALERF
                     KNMEKLANQAKIVITNKSWQPIIAPVS"
     gene            26908..28071
                     /gene="dotB"
                     /locus_tag="JBH85_01015"
     CDS             26908..28071
                     /gene="dotB"
                     /locus_tag="JBH85_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm type IV secretion system ATPase DotB"
                     /protein_id="HAU0944771.1"
                     /translation="MATYYSTSKLMSMDNINLMPDEPTRFTPVFMDRMLEHAESLNAS
                     DITIQTGEPIFAEVYGRLLKITNRRLSNTELGDLINSIYGPNATTQLLSGKDIDTHYE
                     FRPNRGVRYRYRVNATACLVEGHDAIQITLRTIPTTPPKLSTMNLPDNIIEAIAPQEG
                     IVFITGATGSGKSTLLASIIRELIETSDSNRKVLTYESPIEFVYDEIETISAVVSQSE
                     IPRHLPNFADGVRNALRRKPRLIMVGECRDAETISAALEAALTGHPVYTTLHTSGVAE
                     TMRRLVTSFSGEERLGRTIDILETIRLCIWQKLVPTVDERRVALREYLVFDEEVRDIL
                     LEGDPNEVTSATRKLVRQKGQLMTWDAKMKFEQGIISERVYKLIIAGAKEYQQ"
     gene            28154..29881
                     /locus_tag="JBH85_01020"
     CDS             28154..29881
                     /locus_tag="JBH85_01020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HAU0944772.1"
                     /translation="MMFHRKSLYHYFNLFILLILGSSLNWASVNQHSTASPTLNIKIL
                     GINDFHGQISSGRAVKNEPVGGAAVLAAYLKEAQLGMEDRSIITIMGDLVGASPPSSG
                     LLNDEPSILFINGLGNNQCKPESRMDPLCNIVATVGNHEFDKGQKAMFDLIYGTNNPP
                     TDSWISLPNYPGASYPYVSANIVDAKSEQPLFPPYIIKRIHNTPIAFIGAVLKDAADS
                     MFPANAEGVKFLDEADSINHYIPEIKAKGVNVIIVLIHEGGNQIPYEGDTQTTSAVEG
                     HIKEIVYSLGDEIDVVMGGHTHQFLNAFLPNRNGHKILVTQANSYSAAFAEVTLQIDT
                     KNHTVKNKSAKIITTYANRWPGTNPDTQALEIVKLAEDKIGPMINNHVGTAEYDLLRK
                     QNKDGESSLGNLIADAYRTVMNTDLGITNPNGIRDDLKAGEVNWGNIYSILPFSNRIV
                     TITLTGNDIYDLLEQQWMGSYINMLQISGFAYTYDSHQPLGHKIIEIRHQNKPLLREK
                     MYTIATSDFLASGNGVFSVMKRGKIIHIGQSDHDTVIAYIKSLPQPFHASIEARIKES
                     ETGLKTGVG"
     gene            complement(29923..30720)
                     /locus_tag="JBH85_01025"
     CDS             complement(29923..30720)
                     /locus_tag="JBH85_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0944773.1"
                     /translation="MPSTYILNTNDKARERLSLQHQLYAKSSLDLLSEVGPSAAMTAL
                     EIGCGSGDMTLELAKLIGREGSLLTIDLSQDQLDHTQQRTRTYSNIRFKVWDVNHLSD
                     LGEKFDLIYCRMVLHHVADARSVILQMKNCLNSGGFVVCEEPSLFDSTFCSPPSPSYD
                     QFTQWARSCFSKSNRDFQIAHRLEQEFSSCGFEIEHCSLFQPLLRTNKEKLIYSMALD
                     DLTPQLLELGIAKREEIKQLHNELEDLAKTNSTMCWIRMHKIIAKLN"
     gene            complement(30750..31694)
                     /locus_tag="JBH85_01030"
     CDS             complement(30750..31694)
                     /locus_tag="JBH85_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HAU0944774.1"
                     /translation="MKPFVYLTNQFLEPIIPMLIPDWNIIHGWKMASRVDQSRVVALA
                     TTVWDQIDHSFLMQFPNLKIISHLGIGTDNIDINFLKQNHIILHSQPNAGVHDTAELA
                     IALLLTLSRRVILNDRYTRNNEWVEKKPRFLGNHLLGKQLGLVGFGQIGEKIAQFAEP
                     FGLKIAYTARSQKNSPYLYCPTAANLASISDFLIICCSGGIDTQHLINKQVLDNLGPE
                     GYLINVARGSIVDQNALIDALQRHTIAGAALDVYQYEPEVPFALRQLDNVVLSPHMGS
                     STKENLNQMFQLQAKHLNQYLNESLWQRESHVTLFEEQ"
     gene            31925..32953
                     /locus_tag="JBH85_01035"
     CDS             31925..32953
                     /locus_tag="JBH85_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramyl peptide synthase"
                     /protein_id="HAU0944775.1"
                     /translation="MFLPVIPVEEFDGFILKLGKNNYHFCKNETPFNNSCSANIAIDK
                     YCTSKLLEKAGIPVPKAISLNCSEFQRNLHKDKIAQLNFPLVIKPIDGSLGIGVLCNI
                     KTWEELESHLTKYFSSYQCLIIEEFHGKLNSYRVLVFNNRILGIVQRYPAAVTGDRVH
                     PIHELIKQENLNRKRINEALGEITLDEEARIKLQELGITENYIPSFGEQIVLCYTSNA
                     TRGGSYVTINKKMCKQNRKLLLQAAKILDLQLVGIDVECSDIINIPIEQSNGVILEVN
                     HKPSIRIHEFPMKGTPQKVTKKIMRSFITRHPLSYLYSIYNNQPTAFYVRSSILIIIM
                     GLILLAVW"
     gene            33228..34115
                     /locus_tag="JBH85_01040"
     CDS             33228..34115
                     /locus_tag="JBH85_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxovalerate aldolase"
                     /protein_id="HAU0944776.1"
                     /translation="MNPVSILDASLRDGGHRTNFHFKDDDLKKILLPLDNSGIEYIEI
                     GYRNGSLHPIENIGKAGMCPQDYLLYCQSLIKKAKIAVMVHPHNVNEQDLFELKNCGV
                     KLIRICIAKGDLVNAVPLIKLAKNLNFETSVNIIHISYYTESELDSLIEEVSEHEPDM
                     IYFADSNGSLFPDRINCLYKKYTRQYKVSFGFHAHDNLGLAQANALAAVNAGVHFIDA
                     SLAGMGKGTGNLKTEFFIAYLHANNIKKYNLEDVLTAANYVRDALKIGQEPIEMSEFI
                     RGISDLSTADLKSYKPGKL"
     gene            34254..34961
                     /locus_tag="JBH85_01045"
     CDS             34254..34961
                     /locus_tag="JBH85_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944777.1"
                     /translation="MAKKRLLIIGPVSTQSSSLRHLSQNLSFLNPYYSIECLDPLVKQ
                     HECPDEEYYGIWQKQLKQLIKIYDAFVGFSFGGVILQQCFSILNGEKKQIILFSTPTF
                     SDSSLREKLEKVISLCSQNKLEEALSTLYQAVYAPHPIPVTSLRYLNRELAIKRLIFG
                     LTKVLKTDCVSILNHCNVNHFHLIGEKSQLVNTNNVIKPPCGQLIVVPEASMRVLESN
                     PTFCKKIIFKALNHEIH"
     gene            34948..36795
                     /locus_tag="JBH85_01050"
     CDS             34948..36795
                     /locus_tag="JBH85_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate dehydrogenase family
                     protein"
                     /protein_id="HAU0944778.1"
                     /translation="MKSTDPIKIAVLPGDGIGIEVTEATLPVFEVLDVPVILNYGDIG
                     WEFWKKEGAAIPSRTWQLIASSDTVLLGAITSKPQREAKQELSNALKKSNPYYVSPVI
                     QLRQGLDLFANVRPCFSIDDQSKPFNFCIIRENSEGLYCGFDYFPLPKAIHSLLAESQ
                     HWQTIPADEASCALRLQSKSGLTRLFDFAFKHAMQTGMPRVTLADKPNVLRESGEFTR
                     KIFESTAQRYPKIQADILNVDAVALWLIKSPEKFGVIVAENMFGDILSDVGAGVMGGL
                     GLAPSANIGDKGSYFEPVHGSGPRIRKNCANPSAMFLTISMLLNHFGYPDRAKKIVNA
                     VMQVIKEKRFITYDLGGHATTTDMANAVIEHCARLNASCLSKDFNPTPKENLIESDTM
                     PNLLQQLINCNSAEISDALDACGIEGGLLSIKPLSQGMKIIGPAYTIQYLPREKKGTA
                     FHNAANYIDKVPKHSVIVIDNNGQIDCTVWGDLLTHTALRNNIMGTVVHGAVRDVESI
                     RSTNYPVFCTGIYMCSGKNRVYKANEQCPLSINGVTINPGDIIFADDNGVLVIPNDRL
                     QEVVNKTIAIRLTEERIKTAIASGSTLEQAREDYCYEQPWLGINKKRES"
     gene            36795..37655
                     /locus_tag="JBH85_01055"
     CDS             36795..37655
                     /locus_tag="JBH85_01055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944779.1"
                     /translation="MFSPEKLKFIDIHHHAAPDLYIRRRNAIEAGKLYHSLYGAVVLK
                     SHIGSTGVQATIAQEMGLPVFPSVVLNHINGGINYRVVIRALSEYQPLFSGKMIVDFP
                     TITGRKLQSKLSRELTHDNLKQDTQKGETLFGSKQQLRKEVIDILKMTRDYPIVLTSG
                     LASRDEIYRLIDACNQYDVPSLLLSQPSNPLIGLKFTELNELIKNEWLWVEQTALTFI
                     LGYQEKQDFSQILTHLPRVIYSSDLGQLGQMDIPEWLHFSKKIFNELDLSAKRMEELT
                     LSNAIKLLNL"
     gene            complement(37820..38566)
                     /locus_tag="JBH85_01060"
     CDS             complement(37820..38566)
                     /locus_tag="JBH85_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HAU0944780.1"
                     /translation="MDSLLKRRINMLVTKEVEYEDGDTVCKGFIAYHSSASKPLPCVM
                     VAHDWGGRGEGACNKARQLAGMGYIGFAIDMYGNAKLGKDKAEKRALMTPFRENRGKL
                     ITRINAAFNKVVQLPEVDSEKVAAIGYCFGGLCVLDLIRSGAPLKGVVSFHGVLLPLE
                     GESNKSLNAKVLILHGYDDPLVPIEQVNQFAIEMTERKVDWQVHVYGQTAHSFTDPGA
                     NDDEMGLHYNKLADQRSWQSTQLFLQELFA"
     gene            complement(38668..41814)
                     /gene="dotA"
                     /locus_tag="JBH85_01065"
     CDS             complement(38668..41814)
                     /gene="dotA"
                     /locus_tag="JBH85_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein DotA"
                     /protein_id="HAU0944781.1"
                     /translation="MNKLAITVLLCFFPALALAENGALSFAPPASDLSVVFLGNLFGV
                     VDGVLHGTGSQIMGNMFGVFNSAVLALGGIIIMYTLMVSTMNTAHEGQMLGQKWSSIW
                     IPLRSTFGLALLIPKASGYCMMQVFFMWVIVQGVGAADKIWEAALSYLNRGGVIIQAQ
                     ADPTKSLQAAGSSSSGVAKGALTILGGQICMLGLQKQLQAQRDLYLSQSKSPPCGGNP
                     TPEMNTFCRTAIPDFISTVNFVKKQNDDTPKDLTANQPASFELDMPNFDKSSPFYFLN
                     GICGTVKWNNISALNSTNQSDNKGLVTVGGAGSNSSMGANSLNITSSQLQTARLSRAI
                     AIQQMYVTLSTVAQVMVNNDPAFSTTTSTGNSKNDFSAIAKQQFGVPYKSSGEVCTEY
                     QQVCQTWGSVPSSTGSTTGVLFNGTEFLGAINDYNGIMMPTLNLIRQATSKEFDKKSR
                     DFIAEANAKGWIMAGSYFFDLVKLNGSATEFADQFDTGTGLDKSSFDPTQLTKPFGKT
                     CQDPYSLLCTWFQNKSDKLIQIQSLIDGVPALGQDGVKQPDLSDNPQRQSVSGPLSST
                     VYGFVNNSMMVQLPGQPGIKPLTFANLINFKVDTSLYYMKHQDFDCGRVKILFFSFCL
                     GRMMGDLFYNYVFRYVYNFFLAIFGEMINSIVMAFLMIPLQGMKDIFIVGVQTLTQPG
                     INPIVALANMGTMYINFSGTLWLTLLNMAVVSSLIPLFGIFIFALIMMAMPLLMAWIG
                     TMVSIGFVTAYYIPVLPYMIFTFGSFAWLIAVIEAMVAAPIVALGVTHPEGNEAFGKG
                     EFAIMILVNVFLRPSLMIIGYIAAIALSYVGVWILNAGFDHAISYIQSDQGIETWEKG
                     TSSNDAKRFFQSAGNWTGAKMDTSQWDNFKDKLTGDYQSTALEGGYTGWAGVYAFFFS
                     ILIYTSMYLIIVQKAFTLIAHLPDKVLRWIGGSPESFGQETMQWGEEAKGRVEKAGEA
                     TYGAEKAIGDKLGAKGQEMLGKLGPQAKKISENAGDVSGKGKNSGGSQTGPSSKPDTG
                     QQLGGSDSGTPTSTPPPE"
     gene            complement(41811..42266)
                     /locus_tag="JBH85_01070"
     CDS             complement(41811..42266)
                     /locus_tag="JBH85_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmV"
                     /protein_id="HAU0944782.1"
                     /translation="MKKKSGSRIVRVFTRIINVRKWFDWDRMKSLTLYLVNGIKRLFI
                     PQEPTHIESFDEAARKLKLSEADLVIKQKALFRLSIIMVVAAFMILIYTGYQFLYGSW
                     KATIISLVVVMIALVLAFRYHFWYYQIKQRKLGCTVKEWYRQGLLGEKE"
BASE COUNT        13257 a         8906 c         7919 g        12197 t
ORIGIN      
        1 acagaaatta cccattggaa tacacaaaat gacaatagct atcttgtcta ccggagatga
       61 aataatacat ggcgatactc taaataccaa tgcgcattac attgctcatg ccctttgctc
      121 tgaaggctta cctcttggat tacaagtggc ctgtagcgat aaggaaaatg agattataga
      181 tagcctaaac ttcctgacgc aacaccatga tattctaatt ttaattggtg ggcttggccc
      241 aacgaaggat gatattactc gctttgcttt ggctaaattt accaaagaac ctcttcttca
      301 gcatgctgac gctctggatc atatagaaaa aaaagcaaac atagccaaaa tatcactgaa
      361 tcaaggcaat ttgcagcaat gcctctttcc agccaatgca cgactttttc ctaatcctta
      421 tggcacagcc atgggatgtt cttattcatg gaaaggtaaa gtttttattc tattgcctgg
      481 gcctcctcgt gaatgccttc caatgtttaa tcaggatgta ctgccgttat tattgcaaac
      541 atccaggcat agcaataaac aaattctgcg ctggcgagtt tttggattgg ctgaaagtga
      601 aatagctcaa atccttgaag aagctctgga aggtttagac tgtcagacag gataccgatt
      661 ggaaacgcct tatctggagt ttaaggttcg ctgcaaaaga gaattgattg aaaaaataac
      721 atcaataata gaccccattt tagccccgca cattatatca tcacttgaaa ccaaagcatc
      781 tgatcaattg agaagcctaa tcttaaagaa taatgaacca ataactatta ttgatgagat
      841 tactggagga ttattgcaat ccctattggt aaaaccagaa aactaccatt tattaaactt
      901 tcataatctt aacaggacca gattatattt tcattgcagt ggattagaag attattggtc
      961 acaacaagca ccccaaggca ctaccaaatt aatcattcac tacagtaatc aaatgcaaga
     1021 gggtcgtgaa acacatcaga ttccttatcg aagtgctatg gttgtgcatt atgccgctga
     1081 atggctaagc ttcagactct ttcatctcat caatcaattg cattaaagcg tagcaaagtt
     1141 cttgtgttcc cttactctct atagcggaaa tagaaaatac tttgtctttc cactccaagc
     1201 cttttattat ggattgaatt ttttcttctc tttccttttc atcaggtaac atatcgattt
     1261 tatttaaaac caaccatctg ggtttgttga gcagatcggg attatattga gtcaactcat
     1321 tgagaattgc tttcgcatca gcgacaggat cactcccatc caaaggcgca atatcaataa
     1381 catgcagcaa gacacaggta cgtgaaagat gttttaaaaa ccgatgcccc aatcctgctc
     1441 cttgagccgc gccttctata agacctggga tatccgccat gacaaaactc ttatagggtg
     1501 aaacacggac cacccctaaa cctggatgta aggttgtaaa tggatagtca gccactttgg
     1561 cttttgaact ggagacggct cttattaaag tagactttcc tgcattggga agccctaaca
     1621 gacctacgtc tgccaaaact cggagctcca aacgcaaatt tctggattca cccgggcttc
     1681 cgggtgttgt ttgtctaggt gatcgattca cgctgctctt atagcgagtg ttacccaaac
     1741 catgaaaccc accctgagca atcagcacgg gaatacctgg ttgactgata tcagctaaca
     1801 attcacctgt atcagcatca taaaccatag taccgactgg cactttgatg gttaaatcat
     1861 ctcctttctt cccagtacaa tttccaccca tccctgattg tccattctct gctttgtatt
     1921 gacgagtata acgaaaatca atcaaggtat ttaaatcgct gctcgcctca aaataaatac
     1981 tgcctccatc acccccatca cccccgtcag ggccaccacg aggaataaat ttttctctcc
     2041 tgaagcttaa gcaaccattc cctccttttc cggcttcaac tttaataagt gcttcatcaa
     2101 cgaatttcat gcctaacctt agactaaaat aggacttacg taaaattcca agcttaaggc
     2161 aaaaaatatt ttcaatgaat gcgcttagat aagctaattg actgaattga aaatattttt
     2221 tagcaaagag attgggattt tgcctaagtc tgtaaaaaaa aaccccgttt ccggggttaa
     2281 acaaaacgaa ttatgatgcc attgggtaat agcattgttt cagcttaact cgcagcttct
     2341 tctcgttgct ccggtaatat agtgacatac ttacgatttt tttcaccctt ggtagtaaac
     2401 tgtactaacc cctctaccaa cgcatacaaa gtatgatctc gaccacaacc aacaccaggt
     2461 ccaggatgaa aacgtgtgcc acgctgcctt acaatgattt caccggcatt tacaaattga
     2521 ccaccaaaac gtttcacacc gaggtacttt ggattcgagt cgcggccatt acgagtacta
     2581 ccacctgctt tcttatgagc cattgctatc tcctcttatt taccaatcgc agtaatttta
     2641 acttgcgaat aatattgtct gtgccccatt tgtttcatat ggtgcttacg tcgacgaaat
     2701 ttaataattt taactttttt gtgacgacca tgatcaagca cttcggcctt tacagttgct
     2761 ttagcaacaa aaggtgtgcc acaagtgacc ttatcaccat ctactagcat taatacttcc
     2821 gaaaatttaa tttcattgcc aacattttca ggcagcattt caatttttaa aacgtcacct
     2881 tctttcacgg tatattgctt accgccagtt ttaattaccg catacataac tattctccaa
     2941 ttcgcctgat tggctatcac aattccaaca aagtgccata ttctatgaaa ttatgactat
     3001 tacttcaagt tcattttaaa atattgtata cttcaccacc ctttaccgat tgacttaatg
     3061 tttttgaggc tttcgagtaa attttaatct ggtcgcggat taattaggag ctatagtcat
     3121 atttaagata gtgcctagag ggaaccctta aatttttgga gtttttataa tgtcaactat
     3181 tcaattagaa gcacaatcaa gaacggatat ggggaaaggt gcgagccgcc gcctacgtcg
     3241 tcttgaaaat aaagttcctg ctgtcatata tggcggaagc aaaaaaccta tggcaatcca
     3301 ttttagccat aataaagtga ttaaggcatt ggaaacagaa agcatttatt ccagcgtttt
     3361 tgacatcaca gtagatggca aagtagagca cgttattttg aaagccttgc aacgccatcc
     3421 ctacaaacca atcgtgttac atatggattt acaacgcgtt tccagtaaag acattctggt
     3481 taaattagta cctgttcact tcataaatga agaacaatct ccaggaatta aagctggcgg
     3541 tattgttcaa cataccatga ctcaagttga aatacgttgc caggcaaaag atctgcctga
     3601 atttattgaa gtagacatgt ctaaggtagg tatggatgat gtggttcact tatcggattt
     3661 aaaacttcca aaaggcgttc agctgacagt ggatgtagcc gatggtagtc atgatgctcc
     3721 tgtggtgagt atacatgctg ctaaagtaag ctcaactgaa ctggaagaaa cacctgaagt
     3781 tccagcatca gctgtaccga ctacagatca aggggaaagt gctgaataag cacttccctg
     3841 ttatatattt atgcaaatat tcagagctta acccagaata tttgcataaa atctagtgct
     3901 agaatagtta acacaaatcc gcttaattca aattttatag aaaatctatg gtcattaaac
     3961 taattgtcgg tttacgcaat cccggatcgg cttatgaaca aaccagacac aacgcaggtg
     4021 cgtggttagt gaccgctttg gcccaaagac ataattcgca ttttaagatt gacaagaaaa
     4081 tgcaagcgga attaactgaa attgatatta acaaccaccc atgtcgacta gtgcttcctt
     4141 tgacttttat gaatcatagt ggtcaaacaa caagaataat cagtcaattc tataaaattg
     4201 aacccggtga aatattaatt gttcatgacg agttggattt acctgttgga cgaatcaaat
     4261 taaaaacagg tggtggccat ggtgggcata atggtttgag agacataact gctcaattgg
     4321 gaacaggtga atttcatcga ttacgtatag ggataggtca tcctggacat aaagatctag
     4381 tccatcaata cgtactcagc aggccttcta tgcacgacag gcaacaaatt tatgatgcaa
     4441 tagacagagg tatagcgata atacctatag tattgtcagg ggatatggcc cgagcaatga
     4501 atcaagtaaa cgcttaacat aatgaggtat gactcatggg atttaaatgt ggaatagtag
     4561 gattgcccaa tgtagggaaa tcgactcttt ttaatgcatt gactaaggct gggatagagg
     4621 cggccaatta cccattttgt accattgagc ccaatgtagg tatcgtcacc gttcctgatt
     4681 caagactgga taatttaagc gacatagtca agcctcagca ggtgcttcat gccaccatgc
     4741 aatttgttga cattgcagga ttggtaaaag gcgcttccag tggagaagga ttaggaaatc
     4801 aatttttggc caacataaga gaaacagacg ctattgctca cgtcgttcgc tgctttgaca
     4861 actcggacgt tgttcatgtg gaggggcgag ttgacccctt aagtgacata gaggtgatta
     4921 atacagaact ggcattagcg gatatggaga cattggaaaa gtcgctatta aaagtaggga
     4981 aaaacagtaa aagtggaaat aaagaagcca tttttgaatt aaaaactctg gaaaaaatta
     5041 aagcacatct tgatgccgga tatcctgtaa gaacccttga acttacccct gaggaagaac
     5101 aggtaagcaa acgccttttt cttttaacgg ccaaaccagt actttacata gccaatgttg
     5161 acgataacgg ctatgagaat aacccgctcc tggataaagt tcaggctctg gcttcccagg
     5221 aaaatgccag catagtagcc ctttgtgcag caacagaagc cgagctggtt gagctggatg
     5281 aagaagacag acaagagttt atggttgatt tggggcttag tgaacctgga ttaaataaag
     5341 tgatccgtgc cgggtatgaa ttgctgggat tgcaaaccta tttcaccgca ggagtgaaag
     5401 aagtaagagc ctggacaata cgcaaaggag ccacagcacc gcaagctgcc ggggtcattc
     5461 atactgactt tgagaaaggg ttcatccgcg cggaagtgat ttcttacgat gattttattc
     5521 gctttggcgg agaacaaggt gccaaagaag ctggaaaatt gcggcttgaa ggcaaggaat
     5581 atattgtctg tgatggagac gtcatgcatt ttcgctttaa tgtttaatca ttagtattct
     5641 gcaactggtg atttttcaag aattgagcca aagagcctcg agcctctatc gtttcatcat
     5701 tgcgagtggc caagtatcga gccaggcatt gaagcaagtg gaagtatgct atcaggcgta
     5761 tattttccta ctcttatacc acgctgactg ttgtttagct tgcgatagct caaaccgacg
     5821 cagagtcaac agaagataaa cgatttggta gaaaatgaat agcaaaccaa ctccctgtgc
     5881 gtaaatcaac ctcaatgagg acagtgtggc tgttttttaa tctataattg aattaataaa
     5941 ggaaattagc cccattgatt accggccaat gcgattgagg taggtgaatg tcattactaa
     6001 agaaaacaag agagcaggat tactcaatcc tggttaccac tcaagaccag caaagaaagc
     6061 gccatttact taatgttatt tccatagagc ttttaatttt gggtcttttg ctgataataa
     6121 caaacctttg cctgctaaga gcctggctta taatcactat gttaatcgtg ggcattttca
     6181 tcttgctcgg aaatttaatc ttaatcaaaa agaacttcaa tctggccttg agtgggcaca
     6241 ttttgaatat tcttgtgttg tctatcatca ttggaggcaa tctcatcgtt ggaaaaacta
     6301 ccatgtctta cctgggatgg ttctatgttt ctccaatcgt tgcttttgct acacttggat
     6361 taaccgggtt agtcgtctat ggcctgctgg cgattggggc aatgtttctt tttatattcg
     6421 aattctacat ccccatctat tccatttctc aggaatatgt attttttctg gataatacca
     6481 accacctgtt tatttttgcc cttattttca ctgttcttta tcattttctg gttcaaaact
     6541 tacaatatga attgctgtta aaagagcaaa attacctgct cattgctgat aaagaaaagt
     6601 tccattatct ttcgcatcac gactcactaa ccaacttacc caaccgctct tactttcatg
     6661 ctcatcttca gaccctatta gagaacactg acactaaaaa ggaagccatt actctttatt
     6721 ttatggattt ggataaattc aaacccatca atgacgaata tggtcatgag ttcggtgatc
     6781 agcttttact tttaaccagc aagcgtttgc aatcctgctt taggaaaaat gattttatag
     6841 cccgactggg aggagatgaa tttaccgcga ttatcgttca taaaccccat gatcaaattg
     6901 ctgaggctct aactcttaga attgaacagg aatttgaaca accttttgtc ataaatggcc
     6961 agaccattca ttgcaccata agcgttggga tagccaatta cccgcgcaat gcaaaaaatg
     7021 cggaagattt gttaaaatgg gctgataaag cgatgtatga caataaaagg aaaaaatatc
     7081 aaacgcttaa acaaacctct taaccaacat tcctaattta atcagtatga ttgggccttc
     7141 attttatcaa gcacaggatg cagcaatctg acattcactt gacaattaac ttttacaact
     7201 ttagcattca ttgattaaat atcagagggt aaatgaatga ctattgaccg tatacgagcg
     7261 ctggttagtg aagattttaa cgcggttaat aatttaatta ttgataaaat tcaatctcaa
     7321 gttggtttaa ttcaggactt gtcacaacat atagtcgaaa gtggcggcaa acgtttacgg
     7381 cctttggttg tcctgttggc aagcaatgct tgtggataca aaggaaaaga ccatatttct
     7441 cttgccgcta tggttgagtt tttccatact gccactttgt tgcatgatga tgtgattgat
     7501 gaatccactt taagaagagg tcgacaaact gcaaatagca tttggggcag taaagccagt
     7561 gttttagttg gtgattatct ttttacccaa tccgtaaatc taatggtaga ggttggcatt
     7621 aaagaaattc tcaatctact ggccaatact tcccaccaaa ttacctgtgg cgaagtcaaa
     7681 caacttgcca atcgccacaa tcccgcttta acccttgatg actatttcga cgtcatccgg
     7741 gccaaaacag ctcttttatt tgctgcggct gcctgcatag gtcctatact cacgaatgcg
     7801 cctattgagc ttcgaaatag tttatataat tacggtttac acttgggaaa tgcctttcaa
     7861 ttgattgatg atgccttgga ttattgctcg gatgctgcca ctttaggtaa aaacattggc
     7921 gacgatttgg ctgatggaaa agcgacttta ccactaatac atgcgttaca aaatggtaat
     7981 gcgactcaac aacagcaaat aagagaaagt ttaatgaaag gcagtctaag ccatctgcct
     8041 gatattttaa ttgctattga gcaaaccgaa gccataccgt ttacgaaacg aattgctgcc
     8101 caagaagtag actcagcact atctgccctg gaaatactgc ctgactcagt ttataaagaa
     8161 gctttagtcg atttggccaa atttgccttg gaaagaaatt attaacctga taattgcatc
     8221 gattctaata attacacaac cgattgataa taatctggcg gagtgcggca tttaaagcag
     8281 gcagttttgc aattggctcc tccctgacac ttccttattg cccctttcct aacccataag
     8341 tccagcatag gttgcaatgc ggtcagatcc aaatgaaact ccctactcaa ctgttgagta
     8401 cttactaccc cttcccggta gataaaatca cgtatttgca gcagcatttt gcctccccat
     8461 accatactgg ctataacgaa atacagctaa aacaaaaagc aggctcagtg acatagccaa
     8521 aatccagacc atactttgtt gaggatgatc cagaaattta gcgccttgat aaaagacaac
     8581 ggaagtggcg taagccacga caaatgacca aacaatggaa gtccacataa atcgcttgtt
     8641 tgcctcctgg cgaatcactg ccatagtcga aacacaaggg atataaagca aaacaaaaag
     8701 caaataagcg taggctccta cagctccatc aaaacgtcgt gacataatgc catagacaga
     8761 ttgagataac tcactatcag ctgcactggc agaaacaggg ttccacaatg cagagcctaa
     8821 ttcagacaaa ttggcgggaa tagacccaaa agcagctttg atgccccccc aaaaatcaaa
     8881 gtgagcagca gctatttctc ccacatggcc tacttgggca taaagtgagt ttaaggtgcc
     8941 aaccactacc tctttagcca gcatgccagt taataaaccg acagtcgcgg gccagttgtc
     9001 ttgatgaatt cccattggag caaataatgg agtaatccac tgacccatta ttgacaataa
     9061 agaatccgta ttggcttctc cggagctaat ccctcctccc caagtaatcg catttaatcc
     9121 tcccagaatc acacaaatgg gaataatcag cttacccgca cgataaacaa aaaatcgtaa
     9181 tcgcatggag gtttctctca gcaatcttct gagtgagggt ctatgatagg cgggtaactc
     9241 caaaatcaaa ggagaagcat gtcctttcaa cgtagttttg cgtaaaatat atccggtaaa
     9301 tacggccatt aaaatgccaa tcaaatacaa cgaaaaaaca acattatgcc cgccagaggg
     9361 gaaaaaggcc gcgacaaata ctgcataaat agccagtcgg gcactacaag acataaatgg
     9421 actcatcatc acagttaata atcgatcgcg ctccgagtcc agggtgcgtg ctgccataat
     9481 ggcagggaca ttacatccaa aacccacaat catgggtaca aatgattttc ctggtaatcc
     9541 catggctcgc atcgctttat ccacgacaaa agcagctctt gccatatagc cagaagtttc
     9601 caataaggac aaaaagaaaa acatcgcggc aatcacagga ataaaagtaa tagtggtatt
     9661 aattcctttg cctaccccat tagctacaag cgcgattacc caatgtggtg catggagctg
     9721 ttgcaacaac caaccactac cctgaacaaa gatagtctct gtactaatgt caaaaaaatc
     9781 ctggaatgct cccccaatat taatagcaaa caaaaacatc aaatacatca tcgcaaaaaa
     9841 tatgggcaaa gctaaaaagc gatgcaaaac aagtttatcc aatttagcag tgaagtgttc
     9901 gctggcatca ctatgctttt tttgaaccaa cgtaacaatt tcatggattt tttgatagcg
     9961 agcgtctgcc agtaacacat caagattttg ctccgtttct tgaagcttta taagaagact
    10021 ctcggtaaaa gctttctctc ctatcaaagt atccccttcg gcaagcctac gggagaaata
    10081 gtaggcaaag gaatttttat acccttttga gatcagctga ttttccaggt cattcaaaat
    10141 ttgttgtgct gcaaccgata aggaaagttt tagaggtttt atcttttggg agcaatgaag
    10201 taatgattgc tgaagtgccg gaataccaat gtttttatgg gcctgaatgg gaataacaga
    10261 acaccctaac aaactctcga gtttctctgt atcaatagaa ataccccgat gctcggcaat
    10321 atccatcatg ttaagtgcta caacaacagg tttacctaac tcaaaaagtt ggctggttaa
    10381 atacaaatgt ctttcaaggt gacaagcatc tataacatta atgatgcaat cgtattccaa
    10441 atcaataact gactgagcag caatttgctc atcctggctt attccttcgg cattcgcaac
    10501 cagagaatag acacctggca aatcagtgat ttcaattaga tgttctccaa gcaaaaattc
    10561 acctgttttt ttctcaacag ttactccggg ccagttgcct acgcgttgat tcgcattggt
    10621 caaggcattg aatagggttg tcttaccaca attgggattt cctattaata gggcatgagt
    10681 catagatgct ccaacactaa ttgactcgct tcatctttac gcaaagttaa aaatgttccc
    10741 cttacttcaa tttgtaccgg acaccctaat ggagccatcc tcactacaga aaactcaact
    10801 ccacaagtaa tacccaggga taaaagcctg cgtcgatact gcatatcagt cgcaccaaaa
    10861 ctgaccaatc gtactttatc cccttgtttt aattcactaa tctgcataat atataaacaa
    10921 tacggtgatt catttaatta attttaacac aaacgatatc gagaatcatt ctcaattaag
    10981 aaattttata ccacattaca gcatttcctt taccaaacgc cgaggatgac gactcagata
    11041 gtccaccgat tgcatctcaa ttagacggct caacgttctt ttaaacgttt ccttcatttc
    11101 acctttaacg tacaattctt ctgcaggaac atccgctgag ataatgagct taatgcccct
    11161 atcatacata acatctataa agtgaataaa cataatcgct tgtgctgtgt gactttcagt
    11221 aagctgataa acatcactca ggaagacatt atcaaagcga tcagcaattt ctaaataatc
    11281 caattggcta cgaggaaaat tacaaatcac atcaaaagca aaccaaatag accttgtccc
    11341 gtatttaata tatggaatat cacgattttg tactgttata aaacctttgc agtcttcttc
    11401 ccgggttatt agagcaaact gtttttccat tgcttcttgt gtttgttcat ttaaaggata
    11461 taaataagcc tctaacaagg gttgtcgacc taaacgataa tctcgttttt gattaagatt
    11521 cagaacctca caattttttt taataatctc gatagccgga ataaatctct ctctatgcac
    11581 cccatttaaa tacaactcat ccggacgagt attcgaagaa acaaccaaaa caacgccgta
    11641 gtgatgcagt gcttgtaata attcagccaa aatcattgca taagccacat cgtgaactaa
    11701 aaactcatca aaacacagta aacgaatcga tttggccatt tctttggcga tatactgcaa
    11761 aggatttttt ttgccttgta atcgtcttaa ttgagcgtca atttgctgca taaaatgatg
    11821 aaaatgaaat ctcgcctttt tttcctcatc aatatgctga taaaacaaat ccaccaaata
    11881 agtcttgcca actcccacag gcccatagat ataaagccct ttaatgggat gcttttttct
    11941 ccagggaaac caagagtcac tcttcttctg taaatcctca gcaagcctct gcatgtgttc
    12001 aaggatttct ctctgctcag gatcgctatc tatttcacct ctataaatcg cggcttcata
    12061 ctgctcaatc aaactcatga caggcaaacc tgatcacgaa cagcatccat cagtttttct
    12121 tttaatatta aaagcttacc atgaaaaaaa tgacccgttt caacaaattc aatgactggc
    12181 aatacctgcg atgattggct ggcgaactca ctcaccagtt caaatggcac aacctcatct
    12241 tctttgcctt gtataataag ccagggatga ggaggtggct caaattcttt gtaatcataa
    12301 tgatgcacag gaggagctat cgttattaac agagcatgct cacaatgaga cgccgttcta
    12361 taagccacat aagatccgaa agaaaagccc gcaaaaatat tttgggcttg cggttgctca
    12421 gaatgccact gcctcacgag cttgcgcata tcttcactct cgccaatacc attatcataa
    12481 tggcctccag actgccctac acctctgaaa ttaaaccgta ctgaaggaat atgcaattcc
    12541 ttaaaaactc tggccatcgt ggtaactact ttgttattca ttgtcccacc ttgtaaagaa
    12601 tgtggatgac caagaaaagc aacatagcga gtatccgcat cttcaggaac agtcagtacg
    12661 gtttccagtg ggccaactaa tccttcaagc attaattcat gctctccggg agtatttaat
    12721 ttgtcggtaa atagcataac aaccctgcca atttaaagat aataacctaa atcaatatgg
    12781 atttaagcaa aagagttagg ctattatagc aatggatgcg ttgaccccca atagaccttt
    12841 tgtatatctg gtttattttg ttggcagcga cttttattga ccttcagagg aggacttgat
    12901 ccatgagaca ggtacctgta ttaccatcat tcttatctat tccaggcgca ttctcctatt
    12961 cagggagaac ggcatgaaaa tccatgattt taaaataaaa aagcaggaac aaaagaaaat
    13021 ttccatgttg acctgttacg attacccttc agcatgcata gtagcagaat caaatatcga
    13081 ttgtgttctc gtgggtgatt ccgtagctat ggcagtgcac ggccacccta caaccattat
    13141 ggccactatc gaaatgatgg aattacatac ccaggcagta gctcgtggtt taggcaaaca
    13201 gtttttgatt actgacttac cttttctcgg acataaatca tctcaaggtc atacagtaga
    13261 aaacgtaaaa aggctgttac aggctggagc ccaagcagtt aaaatcgagg gcgctgataa
    13321 agacacctgc caaacgattt cccatttagt taatgccggc atccctgtta tgggtcatat
    13381 cggcttaact ccccaatcca ttcatcaatt aggcggttat aaagtccagg gaaaaaacag
    13441 cgaacaggca gaaactctat tacaacaggc agccaccctg gaacaagccg gctgctttgc
    13501 ggtagttatt gaatgtgttc cgcaggagct ggcaaaaacg attaccgatt cgttagttat
    13561 tcctactata ggaattggcg caggcccagg aactgatggg caagtccttg tctggcacga
    13621 tatgctaggt ttacagactt catttaatcc taaatttgta aaaaaatatt ttagagccaa
    13681 agaccatttt attgaagcct taaacagcta tgtccagcaa gtacaacaaa tgcatttccc
    13741 agctaatgaa cattctttct aggaaaatta tccatgcaaa tttttcataa tttaaatgag
    13801 tggattcact ttagaaacac cctgtcccct gatttatccc tggggtttgc tccaactatg
    13861 ggtaacttgc atgctggaca tgcttctttg tttttagcca gtagcaaaga aaatcactat
    13921 accgtctcca gtttgtttgt taacccgacc caatttaata accctgatga ttacaagcat
    13981 tatccacgca cagtcgatgc tgatctcgaa ttaatgactc agaatggagt tgatttttgt
    14041 atactcccca atgaaaatga aatctatacc gatggctatg cttatcaagt tcaagaaaac
    14101 cggcttgggc aattgatgga gggaaaacac cgaccggggc attttaacgg agtactgacc
    14161 atcgtcatga aactctttaa tttggtcaaa ccaacccgtg cctattttgg tgaaaaagat
    14221 taccaacaac tgttgctaat tcaaggaatg gtaaaagcat tgttcatgga tattgaaatc
    14281 aaatcttgcc ccacagtaag agaaaaaagt ggcctagcct gcagctcacg caataacagg
    14341 cttactccaa gccaaagaga aatcgctgat gaatttgcaa aaatatttca tcaaaacaaa
    14401 tcctctgcca tgataagcaa agaattggaa gcgcttggaa ttactgtaga atatattgaa
    14461 gaattccagg gcagacgatt tgctgcagta aaaattggcg atatccgtct cattgataat
    14521 tatttgctat gattcaaacc aattggtgcg tgataacagg tggaccttcc tcagggaaaa
    14581 ccactttaat taatcatttg gcagagttgg gatacaaaac tgcgccagaa atagccagat
    14641 tttatatcaa ccagctgctg tctcatgata aaaaaactct acaagaaata aaacatgata
    14701 tcctttggtt acaaagaaaa attctcaata tcatgttaag acgagaaaga aacctgccta
    14761 agaaagactt aatttttttt gaccgtggca ccccggacag catcggttat tttcgttttc
    14821 atcatttaga tgagactcat gtggtcagag cttgtcggta tttacgctat aaaaaaattt
    14881 ttttctgtca tcccttgcct gttgtcccag ataccataag agatgaggat gatgtcaccg
    14941 caaagaaaat tagtgactgc atttataatg cctatgttgg ccttaactac cctgtcatag
    15001 aattaccagc aacctcaata aaagaacgcc tggaaattat tttatcccat gttgatacct
    15061 agctttaggt tttatgcaaa gcgattgccg ctgcaataac cgctgccttg tgttgaggca
    15121 aggatttatt tgaatacttt aaccattcgg ggtgtgcctc cactaaaccg gtattgaata
    15181 cccctttctg aaattcctct gattttatca tttctaaata ataaggaatg gtagttttta
    15241 ctccaaacat gcgcatttcc tcaagagctc gacgcgcccg tcgaagtacc gagggccaat
    15301 caaaagccca tacggtcaat ttggcacaca aagaatcata atccggggga atctggtaac
    15361 cagtataaat tgcgctatct gtccttacac caggtcctcc gggagcgtaa tatcgagtaa
    15421 tccttccaaa actgggtaaa aaatcgtttt gagggtcttc tgcattaatg cgaaattcga
    15481 tggcaaaacc attgtattta atttgttctt gagagatagt tagacgctca ccagctgcaa
    15541 ttcgaatttg ctcctggact aaatcaatac cagtaatctg ttctgtaatt ggatgttcaa
    15601 cttgtaaacg agtgttcatt tccatgaagt aaggtcgatt atttttatcc aaaataaatt
    15661 caacagtacc cgcattggta taccctacct ccttggctgc cttgactgcg tatcccaaaa
    15721 gcacttgacg tgtcgcctca tccaattggg gggaaggcgc tatttcaacc aatttctgat
    15781 gtcgcctttg gattgaacaa tcccgttcaa acaaatgaag tactgttcca tgatgatctg
    15841 ctagaatttg tacttcgata tggcgtggat tcgctatata tttttccatg tagatatggg
    15901 agtctccaaa tgatttttct gcttcagatt gcacgcgagc aaactgttgc tttatctgac
    15961 tggcatcatg acataatctg atacctctac ccccccctcc aaaagtcgct ttgagcatta
    16021 caggataccc tagagtttct gcgcaatgta aagcgtcatc tatagtttcc aaattcccct
    16081 tgcttcctgg tatggtggga acccctgctt ttatcatcgc ttctcttgct gcaatcttgg
    16141 agcccatagt ggctatcact ggagcagacg gtcctataaa aacgatacct gccttattac
    16201 aatcctcagc aaactcggca ttttcagata aaaaaccata cccggggtga attgcttcac
    16261 aaccggccac cttggcacac tcaataatac gccgtccgtt aagataagca tctaaaggtt
    16321 ttttactaag acagtgagaa tgagaagctc ttttgacatg cagggcaaat ctgtccactt
    16381 cactgtgaat agtcactgct gctatcccca tctccttgca agcacgtact attcgcaggg
    16441 ctatctcacc gcgattagcc accagaattt ttttaaacat taaaaatctc ttgtaaaaac
    16501 tggctcattg cttgccatga tcggcgcgca gcaacctcat cgtaaattaa tcctaaatgt
    16561 tcatcatgcg cttgaggatt agtaaaagca tgtttcacct gcccatacat atgcatttgc
    16621 caatccacat tagcttctgt catttcctga caaaaagcat gtacttgttc cggtttcgcc
    16681 ataggatcat cataaccgtg caaggccaga atttttgctt taattcttcc ggatgctaga
    16741 ttctcaggtt tattaagcaa gccatgaaaa cttactgctc ctcgaatatc cgcaccactc
    16801 ctggctaaat caagggcaca caaaccacca aagcaaaacc ctataatggc tatgcgattg
    16861 ttatcgacta ccgatattga tttaatggct tccaatgcgg catacaaccg tcccctaagc
    16921 aaagagcgat cgctgtacaa gggttgcatc aatgccattt tttcatcatt gttagaacca
    16981 atttgtcctt gcccatacat atccaaagca aagcctatat agcccatctc agcaagttgt
    17041 tttgctttaa ggcaagcaaa ctcacctctt ccactccaat catgagcgac tattacggca
    17101 ggccgagatt gtttaattcc ctcttcatgc gctaaaaatc cgtgtaactc aagatcatca
    17161 tgttgataaa tataattcga tgaatacata aaatatctcc taaattattt taaaatagtc
    17221 tagggcaata tccgtaaaag tccagtaatt acattagttt agcctaatgc ttttctttgt
    17281 cttttgttcc tcgtggctaa gtaaaaatag tgtcgtccaa taaaaggata tcgaattgaa
    17341 ttaatctaat gctcttgcat gtttcgccaa aacatgagtc catgagtcag taaatatcaa
    17401 tatgtccact aattaactca aattatggat ttggtctaaa ataaaaataa attatgtgag
    17461 gaatgttgcc atgatgactg attcgttaat acacataagg gatttgttac atgctcaatt
    17521 ttgctaccaa atgtttatta ctcccattca tcttcctatc gataaaaaat acagggaatt
    17581 tgccaaaatg gcctgtgaat tcatagaagg aagacgggat gaaatcatac acagagaata
    17641 tcctcgtcat catgttttac atcgttttac tcccgcgagc aaaccaaatg gaaaaaaaat
    17701 attgattacg catggctgga tgtctcgtgc tgcttatatg gttcgcttaa tcaggcttct
    17761 tcataaagaa ggatatgaag tctatgctat cgattttcct gcccatggcg aagctaaagg
    17821 aattcagctt ccctggactg atgccattgc tattatcaaa gaaacgatta accaatttgg
    17881 gcctttttat ggattggttg gccattcttt tggtggttca atgattttaa atactttgaa
    17941 tctggcaggc caactaccgg aatggcaatt aaatcacaag ccggaaagag ccattttaat
    18001 tgcatcgcca acacaaatgc gaactcctgt caataaaatt gccagacgtt ttaaattaag
    18061 cgggcaagcc tatttacaac ttcgccaatt aatccgtcaa caagcatcgg tagatcctga
    18121 gagaattcgt ttaagtcatt ttatttccca agcccctgat acctattttc tatgtatcca
    18181 tggagaattg gatgccacta tcaaccccaa agaatcgata aatttttgca aatattacaa
    18241 aaatgcccgc ctgtctcttt taccagacgc tgatcatgtg agtgtattaa tggatgagcg
    18301 cgtcgaacaa atcgctttgg attttttaaa tcgttaatat gacagggggg gttgatccac
    18361 ctggattacg gttttaccta atccaggtgg atccagtagc taggcagacc attgtgtttg
    18421 ctgaaacaat gagtttcaca tacagaggaa ttggcttcaa aattttgtaa ttaaccctcc
    18481 atgtattgac ggattttttt catggcattt ttttcaagtt gcctaacccg ttcagcagag
    18541 acaccatatt tttctgccaa atcatgtaac gtgagttttt cttcagcaag ccagcgttgt
    18601 tgtaaaatat cctggctacg ttcatccagt tgttccatag caaacagtaa tttttcacgc
    18661 ccctgatcgc cagtatcctc attctctaac aagacagcag gatcatcgtt cacattaaac
    18721 aaataacgct caggcgcttt gtaagcatca tcattatcat caacatctgg cgcatcataa
    18781 gatgaatcca taacatttaa acgttgctcc atcaacaaca cgtcttctcg gctaacgccc
    18841 aaatctttgg cgacagcgtc aacttcttca ttgctgaacc aacccaatcg atttttcatt
    18901 tggcgcaaat taaaaaataa tttacgttgg gccttggttg tagcaacttt aactattcgc
    18961 cagttacgca gcacaaactc atgaatttct gctttaatcc aatgaacagc aaaagaaaca
    19021 aggcgtacgc ccatcttggg gtcaaaacgt tttacggctt tcatcaagcc tacattacct
    19081 tcctgaatta aatcacttaa aggcaatcca taccccagat aaccgcgggc tacacgaact
    19141 acatagcgca aatgcgcaag aactaattgt cgagcagctt ctatatctcc ttcagaatga
    19201 aaacgctcgg catatgcaat ttcctcttcc aaagtcagca ttggaatttg atttactcga
    19261 tggatataag aatcaagact accaacaggt agattcattg cagcaagttg caactgttga
    19321 ctcatactac ttcctccggt cattaacact aaaatagtat taaaatttat atcctattaa
    19381 ctgataggat tcaccaaaat gaatgctaag ctataaattt tcaaaaactg caaattaagt
    19441 aaaagttcat aacttagcac tctcttcatg atgtttcaat tttggtcatt atttcagcga
    19501 tccttggcat atttataaat cgctaaacct cttatataaa agttttttac ggtttataag
    19561 cacacaacga atccggacaa atattgacca aaaccaatgc ttcatcaact aatattatac
    19621 attatttgta gggttctata gaagccaatt gccgcttaac agacaacaag gctccaagcc
    19681 acccgagtat aatagcaaat aacacaagta gcaagatttg ccgtagtgac aaacaagcta
    19741 aaggatagtg catttgatag acattagcca gctgattcac tgcgacgccc agggttagaa
    19801 taaaaatatt aaccagaaag atggctaaaa gtgcgccagc tgccccatac caaattccag
    19861 aatataaaaa aggacgaata atataaggat ctgttgcgcc aatcagtttt aaaattttaa
    19921 tttcttcttg tctattatga atgtccagac gtaaggtatt gccaataata aatactacag
    19981 ccaaagctaa taacgccatt aaagcatttg ctgccttgcc agaaaaaccc aagatagcgt
    20041 gcaatcgatt aatccactcc atatccagtt tcgccaacgc gacttgtgga aaagcctgaa
    20101 gttttcgaga taataaatct aattttgcag gagaatctat aactaatgcg ggaactactt
    20161 caataactgc gggcaaagga ttttcaggaa gataccgcat aatgtcttgc ataccttctt
    20221 gttgagttaa ctcggataat ccatctgctg cagatttgat atttgcctga ccaactcctt
    20281 cagtagtgcg tactttttca agtaacgacg tttgctccgc ttccggcaat gaaggtttca
    20341 aaaacaggga aatgtgcccc cctcgctgcc aacgattggt tagttcactt aaattgtcag
    20401 tgaataccca aaaaagtgta ggtaacgcta aagcgatggc aataacaatg acggtcatca
    20461 tggttgctat cggtttgcgg cagaaaagat tcaagctatt ggccgcggct tgcaaatgat
    20521 aggcaagaag agattgtgat cgttttaaca cagccttcct cctttcagca tgacgatgcg
    20581 atgtttcatt ccggctatta aagccaaatc atgggttgca attaatatac taactccaac
    20641 ctgattaaat tgttcaaaaa tcttcattat ctcagaagaa agttttggat caaggttacc
    20701 ggtaggttca tctgccaata acaatgcagg cttatgaact acagcacgag caataccgac
    20761 tcgttgctgt tcaccaacag ataggtgaac tggtaacatt ttctctttac tcaacaatcc
    20821 caccatatcc aaagcggcat gcaccctttt ggcaatcata ggataagcaa ctccttgaat
    20881 ttgcaagggc aaggcaacat tatcaaaaac agttctgtca ttcagtagct gaggagattg
    20941 aaatgtaatg cctaactggc tgcggtgagc agcaacatct cgctttttga gatgatttaa
    21001 tttcaaacca ttgactgtta attgaccaga cgtcggccat tcaagaagag caatcaactt
    21061 gagcaaggtg cttttgccag cacctgaatg gccagtaaga aagaccattt ctcctttttg
    21121 caaagaaaaa ttaacttggc ttaatgcctc aaagcccccc ggataacgtt tactaacctg
    21181 gtcaaatgtg atcatcatcg aatatcgcac taacaaattg cgctgcgtca aagggcctca
    21241 aatcttcaat gccctcccct acccctaaat aacgaaaagg tatccccaaa tcattcgcta
    21301 tagcaaataa tatcccgcct ttggctgtcc catcaagctt ggtcatagta attccagtta
    21361 attgtactgc ttcatgaaac tgctttgcct gagccaaggc gttctgccca atactcgcat
    21421 ccaataccaa catggtttca tgaggtgcct tgggatcgag tttctgcatg actcttttca
    21481 cttttttcaa ctcttccatt aaattgcttt gagtatgcaa acgcccggct gtatcagcga
    21541 ttaaaacatc tatttttctc gctttggcag cctgaagagc atcaaatatt actgaggcac
    21601 tgtcagcgcc ggtatgctgg gcaataacag gtatgccatt tctttcgccc catacatgca
    21661 attgttccac cgcagccgcc cgaaacgtat cgcccgcagc taacatgact ttttttccct
    21721 gcttttggaa ttgtttggct agtttaccaa tcgtggttgt tttaccggct ccattgacac
    21781 caaccattaa tatgacaaag ggagagccgt cttcagtttc tatggaaagc ggtttctctt
    21841 cctggctcaa aatagtttgc aaatttgtct ttagagtcag ataaactgct tcaccattag
    21901 acagttgctt tcgtgccaag ccttcattta gctgtttcaa tacgtcttga gtggtgtcca
    21961 aacctaaatc agcactaatt aataaggtct ctagctcttc gagtaactcc tggctgattt
    22021 cttttttacc taacagcagc cgacttatgc cttcccccaa ttgatgacgg gttttgctaa
    22081 ggcctttcct aaaccgggca aaaatacttt ctttgggcga aggctctttg acagtcagtt
    22141 cctggggttc ttcaagcctg gattccatgc tgcttttggc atgatcttgt tgctcttcgg
    22201 catccaaatt tggttcggaa ttttgatttc gtttaaacca tttaatcatt ttagtgtaca
    22261 attccttaaa aatatgaaat tctatcatct ttttagcttt gaggtgacat tgtgcacaaa
    22321 ttactcattt ctcttatgat gctactctca tttcaggctt ttagccaagt ccaggagtat
    22381 acgttaaaca atggtttaaa agtactggta aaagaagatc atcgagctcc agtcgtagta
    22441 tccatgattt ggtataacgt gggttcagca gatgagcctg taggcatcac tggtgtttct
    22501 catgccatag aacacatgat gtttaaagga acttccaaat acccggtagg ggtattttcc
    22561 aaaacaattg ctgcattggg aggtcaggaa aatgctttta caaacaatga ttataccgcc
    22621 tattatgaaa aattagatgc tggccatctg gctacaagct tcgaattgga agccgatcgc
    22681 atgaataatt tactgcttaa tagcgaggaa ttcgctaaag aaattaaagt cattcaagaa
    22741 gaaagacgtt tacgtactga caataacccg caggcacttg ctttcgaacg ttttctggcc
    22801 acagcgcatc ttacagcgcc gtacaatcac ccggtgatag gatggatgaa tgatttgaaa
    22861 caaatgaaag tagaggattt aaaaaaatgg tacgaaagtt attacgcacc aaataatgcc
    22921 accttggtag tagtaggcga tgtgaatcct gagaaagtac atgccttggc tgaacattat
    22981 ttcggctcaa tagccaaacg tcccatagcg tctcgtaaac cccagcaaga accctctgcg
    23041 cttgggaaaa aaatggttta cattaacgcg ccagcgaaac tgccattact gttaattggc
    23101 tatactgtac ctagtgtaaa aactgctaaa aataactggg aaccttacgc cttggaaatt
    23161 atcgccggga tacttgatgc cggggaaagt gcgcgctttg ccaaacacct ggtgcgaggc
    23221 aatcaagtag ccactggtgc agaagcctat tataacctct attcaaggta ccaaagccaa
    23281 tttattgtct atggggcgcc tagccaagat catcaaataa aagatctgga aaaggcatta
    23341 attacggaat tggaagcctt aaaaaaagcg cctgttagca atcaggaatt acaaagggtt
    23401 aaaaatcaaa tcatagcaca aaaaactttt gaaaaagatt ctatttttgg tcaggccatg
    23461 gagttgggat tgttagaaac aataggtctg ggttggaaaa atacggaaac atacaccaaa
    23521 gccatcaatg aaataacccc tgagcaaatt cagcaagttg cgcaacgata ttttcaagaa
    23581 aataacatga ctgttgcaga attaaagcca atcaggcaag aagaggtaag accatgagtg
    23641 ttttaagagc ttttatcatt tcgtttagtg taattttttc tcacaatcta ttcgccaatt
    23701 cattcaaaac tgaaaaatgg cagactaaaa atggggtgcg agttgtattt tatcaagcaa
    23761 tggaagtacc tatgcttgat attagtttgg catttgctgc cggctctgcc tatgacggta
    23821 agtattttgg tttaagcgca ttaacaacca atttgattaa tcaaggcaat tccggtaaag
    23881 acgcaacgaa tattgcggaa gctttagcag acaccggagc gcaatttaat gccgaaacga
    23941 gtagggatat ggttgtcctt agtctaagaa ctcttaccag caaagaggct ttgcagcaat
    24001 ctaccaaaac ctttagccaa attattagtc atcctgattt tcctaaagaa gccttcgcaa
    24061 gagaaaaaga tcaacttctc atggcagttg aacaaacaga agaatcgcca gatgatgtag
    24121 ccatccagaa cttttttaaa accttatatc aagagcatcc ctatgcccat cctgtgcatg
    24181 ggacagttga gtcactaaat gccattaaag aaaatcaagt cattgatttt tataaaaaat
    24241 attttgttgc taaaaatggt atattagtta tggttggtgc tattgacagt tctcaagctc
    24301 atcaattggc agaacaattg acccaggatc tacccgcagg agagccagca ccaacaattc
    24361 ccaaagcctc tcagctggcc gatgcggaaa aaattaatgt accgtttcct tcctcgcaaa
    24421 cagtagttcg cttgggacag ataggaatag atcatcataa tcaaaattat ttccctttaa
    24481 tggttgggaa ttatatttta ggtggaggaa cattagtttc caggctgggt actgaggtaa
    24541 gagaaaaaag aggcttaact tacggaatcg atagtcagtt tgtccctatg ctaggtgaag
    24601 gaccttttat cattagttta tcaaccaaaa actccgaggc cagaaacgca ctgcacatta
    24661 cccaggatac cctgataaaa tttatcaaaa atgggccgaa tcaggaggag ctggcttcag
    24721 cgaaacaata tctgacaggc agtttccctc tctctctggg aagcaatacc aacattgcaa
    24781 acctgttatt aagaatggcg ttctaccatt tacctgataa ttatctggat acctatgttg
    24841 ctaaaatcaa tgcggtaacc gatgctgaaa tcaaacaagc attccagcaa caggtgaatc
    24901 ctgaaaaatt actcttggta acggttggac aatcttgaaa caggtaataa ggattattgg
    24961 aggattatat cgggggaaaa aaatacattt ccccgatgta gatggcctga ggccaacacc
    25021 agacagagtt cgggagaccc tctttaattg gttaatgaat gatattaaaa atgcccgctg
    25081 tctggatgct tttgcaggta gtggcgcgtt gggatttgaa gcctattcca gaggagcgtc
    25141 tcatgtcgtt tttatcgaac aatctcccaa agctcatgcc agtttgcaaa ataccattcg
    25201 tcaatttgat acccccaaat tgcaccttat aaaaactgat acgttaaatt atcttaaaca
    25261 aagcaccgag caattcgatc tgattttttt agatcctccc tacgctctca actatgttcc
    25321 tcagtgtctt gatcatatca taacaaataa ccttcttgtt aaaggaggtc ttgtctacat
    25381 tgaatcatca tctcctattg aagtaaaaac agaactttgg aagcaattga aattaaaaca
    25441 agccggtcaa gtcatttatg gattatttga aaaactctaa caaacaatgt cttgacaaca
    25501 agccttcctc ctgtttcaat caaactaata tttccaaatg gtaaagaaca ttgaatgaac
    25561 aacaataaga ttgtcataat gtttattttt tcagcgcttc ttgctggttg cgctggaaca
    25621 atgaaattta aaaaaccacc catcaataat ccaagtgatg atgcgaccat taaattagca
    25681 gaagctgccg tttcagtcag tgactccatg cttgaaatgg caaaagttga aaaagtaatt
    25741 actccaccaa gcaaagacaa taccttaact atacctaatg cttataactt gcaagcaaga
    25801 gccagtgtcg attggtctgg tccgattgaa gaattgactg cacgtatcgc caaagcagca
    25861 catttcagat ttcgtgtttt aggcaagtcg ccttcagttc cagttttaat cagcatcagt
    25921 accaaagatg agagtctggc cgagatcctt agagatattg attatcaagc tgggaaaaaa
    25981 gccagtattc atgtgtatcc taacagtcag gtcgtagaat tgcgctatgc gaaaatttat
    26041 tcttagttta tctattttgc tatcagccct cctggtagcc tgttcttctc gtaatcatta
    26101 cggggatact ggctcattgg caggacttca agctatggct gattcaaaat acacccgagc
    26161 tcaaaaaaaa caaaaaatgg gtaaaattcg cgagatggcc cttaaggaaa ccgctttaag
    26221 tgttggcgcc caggctgggt tagcctggag agcaaaaata attgacgagc aattaaacaa
    26281 acaggcaagg aatcttgatg caatttatga ttttaattcc ctggtcttag agcataatat
    26341 tttgcctcct gtattacttg agggaaggaa tactttgaat cttgcagatg ctcaaagtat
    26401 ccgtatttca gaccgcacct ataaagtcgc aaaacaagct catttcatta ctactccacc
    26461 tacctggcgg caatatttgt ggatggatta tgtgaaacct gaagctccca atgtcactct
    26521 actccccaaa accaaggctg aaaaagaaat atggtgcatc tatactgaaa gagggtggaa
    26581 aaatggtata gatcaggcaa acaccatttt ggaagaaaat attgcccgca ttaaagaaga
    26641 tttcggcggt atgattcttt atagaaaatt actggctatg aacatggtat ctcctcctta
    26701 tgtttctcat actgacttgg gcgtaactgg ggatggctca gaaattcata tcgatgacag
    26761 ggtcttacgc atcacggcgt tacctgaact taatgtcaat agtgcagaat ggagagctgc
    26821 ggtcgccaaa gatgaaaatg ctctcgaacg tttcaaaaat atggaaaaac tggcaaatca
    26881 ggctaaaatt gttataacaa acaaatcctg gcaacctatt atagcaccag taagttaatg
    26941 tctatggata atattaattt aatgcccgat gagccaactc gtttcactcc agtattcatg
    27001 gacagaatgc tggagcatgc agaaagcctg aatgcttcag atataacaat ccaaactggc
    27061 gaacccattt ttgcagaggt ttatggaaga ctccttaaaa ttacaaatcg acgtctttcc
    27121 aatacagaat tgggcgacct tattaattcc atttatggcc cgaatgccac gacacaatta
    27181 ctttccggta aagatataga tactcattat gagtttcgac ccaaccgtgg tgtacgctat
    27241 cgatataggg ttaacgcgac tgcctgcctg gttgaaggtc atgatgccat tcaaatcaca
    27301 ttaagaacta ttccaaccac gccacccaaa ctcagtacca tgaacctccc tgataacatt
    27361 attgaagcga ttgctccaca ggaaggaatc gtgtttatta caggcgctac cggttcgggc
    27421 aaatcgacat tgttagcttc cattattcga gaacttattg aaacatcaga ctcaaaccgt
    27481 aaagtattaa cttacgaatc cccgatagaa ttcgtctatg atgaaattga aacaatttcc
    27541 gctgtagtaa gccaatcaga gattccaaga cacttaccca actttgctga tggagtaaga
    27601 aacgcattaa gacgaaagcc aagattaatt atggtgggtg aatgtcgtga tgcagaaacc
    27661 atcagtgccg ctcttgaagc cgctttaaca gggcaccctg tctacacaac cctgcatact
    27721 tctggtgttg cagaaacaat gcgacgtctg gtcacatctt ttagcgggga agagcgtttg
    27781 ggaagaacca tcgatattct tgaaacaatt aggctttgca tttggcaaaa actggtccca
    27841 accgttgatg aaagacgtgt agccctaagg gagtatctgg tattcgatga agaagtgaga
    27901 gatattctat tggagggaga ccctaacgaa gtgacttcag ccactcgtaa gttagtgagg
    27961 caaaaagggc agttaatgac ttgggacgca aaaatgaaat ttgaacaggg gattatcagt
    28021 gagcgagttt ataaattaat cattgctggg gccaaagaat atcaacaata atcaaaatta
    28081 atctgtttgc acttgccata gaaaaatcat tgatataccg catataaaac aatcaagctc
    28141 aaggattcga ttcatgatgt ttcacaggaa aagcctatat cattatttta acttatttat
    28201 tttgttaatt ttaggctctt ctctcaattg ggcttccgtc aatcagcaca gcacagcttc
    28261 gccaaccctc aacattaaaa ttttaggcat taatgatttt catggtcaaa taagcagtgg
    28321 gagagccgta aaaaatgaac ctgttggcgg ggcagctgtc ctggccgctt atcttaaaga
    28381 agctcaattg ggaatggaag atcgatcaat aattaccatc atgggtgatt tggttggagc
    28441 ctccccccct tcttcaggac tgttgaatga tgaacccagt attttattta ttaatggctt
    28501 gggaaataat caatgcaagc ccgaatcaag aatggatcct ctttgcaaca tcgttgccac
    28561 agtaggaaac catgaatttg acaaagggca aaaggccatg tttgatttaa tttatggtac
    28621 caataatcca ccgaccgatt catggatctc attacccaat tatccgggtg catcttatcc
    28681 ctatgtttct gcgaatatcg ttgacgccaa gtcagaacaa cctctcttcc caccctacat
    28741 aattaaacgg atacataata ctcccatagc atttattggc gctgttttaa aagatgcggc
    28801 ggactctatg tttccagcaa acgcagaagg agttaaattt ttagatgaag cagacagtat
    28861 taatcattac atcccggaaa ttaaagcgaa aggagtcaat gttattattg tcctgattca
    28921 tgaaggtgga aatcaaattc cttatgaggg agacacccaa actacctcag cagtagaagg
    28981 tcatattaaa gaaatagttt attcccttgg tgatgaaatc gacgttgtta tgggtggtca
    29041 cacccatcaa tttctaaatg ctttccttcc aaatcgcaat gggcataaga tcctggtcac
    29101 acaagcgaat agttacagtg ctgcttttgc tgaagttacc ctccaaatcg ataccaaaaa
    29161 tcatacggta aaaaacaaat cagccaaaat tattacaact tatgctaatc gatggcctgg
    29221 aacaaatccg gatacacaag ccttggaaat tgttaaatta gcagaagata aaattgggcc
    29281 aatgataaat aaccatgtag gcactgcaga atatgatctg ctaagaaaac aaaataaaga
    29341 tggtgaatcg agtttaggga atctgatcgc agatgcttat agaacagtaa tgaataccga
    29401 tctgggtatc actaatccca atggaattcg tgatgattta aaagctgggg aagttaactg
    29461 gggaaatatc tattctattt tacccttttc caacaggata gtcacaatta ccttaactgg
    29521 aaatgatatt tatgacttgt tagagcaaca atggatgggc tcttatatca atatgttaca
    29581 aatttccggg tttgcctaca cctatgattc acatcaacct ctgggacata aaataattga
    29641 aattagacat caaaataaac cattgcttag agaaaagatg tataccatag ccacttcaga
    29701 ttttcttgcc agcgggaatg gagttttttc agttatgaaa agaggaaaaa taatccatat
    29761 tggtcaaagt gatcatgaca cggtaatcgc ttatattaaa agtttacctc aaccctttca
    29821 cgcgtccatt gaggcaagga taaaagaatc agagactgga ttaaaaacag gagttggata
    29881 gactaaattc gttttaccgt cagcccctgt ttttattatt tattaattaa gttttgctat
    29941 tattttatgc attctaatcc agcacatagt agaatttgtt ttcgctaagt cctcaagttc
    30001 attatgtaat tgtttgattt cctccctttt agctatgcca agctctaaaa gctgaggggt
    30061 caaatcatca agcgccattg aataaattag tttttctttg ttcgttctga gcaagggttg
    30121 aaataaagaa caatgctcaa tttcaaaacc gcaggatgaa aactcttgct ctaatcgatg
    30181 cgctatctga aaatcccgat tgcttttgct aaagcatgac ctcgcccatt gtgtaaactg
    30241 gtcataggag ggtgaaggag gagagcaaaa ggtagaatca aataaagagg gttcttcaca
    30301 tacgacgaaa ccaccagaat taagacaatt tttcatttgg agaatgacag agcgcgcatc
    30361 agccacatga tgtaaaacca ttcgacaata aatcaaatca aatttttccc caagatctga
    30421 aagatgatta acatcccaca ccttaaatcg tatattgcta taggttctgg ttcgttgttg
    30481 agtatgatcc agttgatcct gactcaaatc tatagtaagc aaactgccct cccggccaat
    30541 taatttggct aattcgaggg tcatatcacc agagccacac cctatctcca gagcagtcat
    30601 tgccgctgaa ggcccaacct cagaaagtaa atccaggctg ctcttggcat acaattgatg
    30661 ttgcagagaa agacgctctc tcgccttgtc attggtattt agaatgtaag tactgggcat
    30721 aatatatcct tatatttgat aaaaaataat tattgttctt caaaaagagt tacatggctt
    30781 tccctttgcc acaaagactc atttaaatat tggtttaaat gttttgcctg taattgaaac
    30841 atctggttta aattttcttt agttgagcta cccatatgtg gtgataagac gacgttatca
    30901 agttgcctta aagcgaaagg aacttccggt tcatactggt atacgtccaa agcggcacca
    30961 gcgattgtat ggcgttgcaa agcatcaatc agagcgtttt gatccactat actgcctcgc
    31021 gcaacattaa tcaaatatcc ctctggccct aaattatcta aaacctgttt gttaattaaa
    31081 tgttgtgtat caataccgcc ggaacaacaa atgattaaaa aatcactaat agatgctaaa
    31141 tttgcggctg ttggacaata caagtaaggg ctattttttt gacttcgggc cgtataagca
    31201 atttttagcc cgaaaggctc tgcaaattgc gctatctttt caccaatttg accgaatcca
    31261 accaagccca attgctttcc caataaatgg ttgcctagaa aacggggctt tttctcaacc
    31321 cattcattat ttcgggtata gcgatcattt agaatcaccc ttcgcgacag tgttaacaat
    31381 aaagcgatag caagttctgc tgtgtcatga acacctgcat taggttgtga atgcagaata
    31441 atatgatttt gctttaaaaa attaatatca atattgtccg ttcctattcc caggtgacta
    31501 ataattttca agttaggaaa ttgcattaaa aacgaatggt caatctgatc ccataccgtt
    31561 gtggctaaag ccacaacccg ggattgatcc actcgtgaag ccattttcca accatgaata
    31621 atgttccaat caggaatcag catgggaata attggctcta gaaattggtt ggtcaggtaa
    31681 acaaatggct tcattaaaat gtcctatttt tcagaataaa gattccgtgt gttgcccatg
    31741 atattctctc tcatctttct gacaagcaaa taaaatcaag cggtaaaatg agcgttctca
    31801 agtagagaca tatagcgatt attacggtta tgatactata ttcttttact attgcatttc
    31861 attattccaa ggagacgtta ccatagagag gaatgcacag caatattttg aaagcgcgaa
    31921 ggaattgttc ttgccagtaa tacctgtgga ggagtttgat ggttttatac ttaaattggg
    31981 caagaataac taccattttt gcaaaaatga aactcctttt aataatagct gtagtgccaa
    32041 tattgctatt gataaatatt gtacctctaa actattggaa aaagcgggta ttcctgttcc
    32101 caaagctatc tctttaaact gtagtgaatt tcaacggaat ttgcataaag ataaaattgc
    32161 acaattaaac tttcccttag tcattaaacc aatagacggt tcgctgggaa tcggtgtttt
    32221 atgcaatata aaaacatggg aagaactgga aagccattta acaaaatatt tttcctctta
    32281 tcagtgctta ataatagaag aattccacgg caaactgaat tcttaccgtg tattggtttt
    32341 taataaccgt atccttggca tagtccaacg ttacccagcc gctgtaactg gcgatagagt
    32401 acatcccata catgagttga ttaaacaaga aaatttaaac agaaaaagaa tcaatgaagc
    32461 tttaggtgaa attactttag atgaggaagc gcggattaaa cttcaagagc tgggcataac
    32521 agaaaattac atcccctctt ttggagaaca aattgtttta tgctatacaa gcaatgcaac
    32581 aagaggtgga tcctatgtca ccataaacaa gaagatgtgc aagcaaaatc gtaaattatt
    32641 gcttcaagca gccaaaatac tcgacttgca attggttggg atagatgtgg aatgttcgga
    32701 tatcatcaat attcctatag aacaatcaaa tggcgtcata ctggaagtga atcataagcc
    32761 cagtattcga attcatgagt ttccaatgaa aggaacccca caaaaagtca caaaaaaaat
    32821 tatgcgcagt ttcatcaccc gccatccgtt gtcttactta tattctatct acaacaacca
    32881 accgaccgct ttttatgtcc gcagctctat tcttattatc attatgggat taattctttt
    32941 agccgtgtgg taattcacct cacctaaaac ttatgtcatt tcccaatctt tacttccaat
    33001 acctggcagt gagcttattt gataataaat ttatttctga aatcactttg ctcaggtaaa
    33061 ggtagttcac tccatgataa attctgataa ttcaccaatc tcaatgaaag aaatttgaga
    33121 ttaaagtgct taattgaaca acatattgaa catgctcatt ttgcaagtgg tcttttaaag
    33181 tttatactta ataataatga ggttaaatta ttattacgag gtattaaatg aatcctgtat
    33241 cgattttaga tgcctcatta agagatggtg gacatagaac taattttcat tttaaggatg
    33301 atgatttaaa aaaaatacta cttcctcttg ataactcagg tattgaatac attgaaattg
    33361 gctaccgtaa tggttcactt caccctattg aaaatatagg gaaagctgga atgtgtcccc
    33421 aagattatct cctgtattgc caatctctaa taaaaaaagc aaaaattgca gtgatggttc
    33481 atcctcataa tgtaaacgaa caggatctgt tcgagctaaa aaattgcggt gtgaaattaa
    33541 taagaatatg tatagcaaaa ggtgatctgg taaatgctgt ccctctgatt aaactggcta
    33601 agaatttgaa ttttgaaacc tcagtgaaca tcatccatat ttcttattat acggaaagcg
    33661 aactggatag tttgattgag gaagtaagcg aacacgaacc ggatatgatc tattttgctg
    33721 attctaatgg aagcttattt cctgacagga taaattgcct gtataaaaaa tacacccgtc
    33781 aatataaagt ttcttttgga tttcatgctc atgataacct tggattggcg caagccaacg
    33841 ctcttgcggc ggtaaacgcc ggggttcatt ttattgatgc ctcactggca ggaatgggca
    33901 agggaacagg taatctaaaa actgaatttt ttatcgctta tttacatgcg aacaatataa
    33961 aaaaatacaa tttggaagat gtgttgacag cagctaatta tgtaagagat gccttgaaaa
    34021 taggacaaga acctattgaa atgagtgaat tcataagggg aatttctgat ctgtctacag
    34081 cagacctgaa aagctataaa ccaggcaagc tctagaaaat gcttatattt ccaatatagg
    34141 aatataaggc tgggacacct tgattcccca agatttgatg ctccagaaag caacgtactt
    34201 tcaaaattaa gctggcaaaa tcatagacct tccaggaata agtagagaat acaatggcaa
    34261 aaaaaagatt attgattatc ggtcctgttt caactcaatc ctctagtctg aggcacttaa
    34321 gccaaaattt atcttttctt aatccttatt actccattga atgtcttgat cctcttgtca
    34381 agcagcatga gtgtcccgat gaagaatatt atggaatttg gcaaaagcaa ctaaaacaac
    34441 tcatcaaaat ttatgatgca tttgttggct tttcttttgg tggtgttatt cttcaacaat
    34501 gtttttccat attgaacggg gaaaaaaaac aaattattct tttttctaca cccacatttt
    34561 cagattcctc cttaagagaa aaacttgaaa aagtcatctc gctctgttcg caaaataaac
    34621 tggaagaagc attatccacg ctttatcaag cagtttatgc tcctcatccc attcctgtca
    34681 cttcgctgcg gtatttaaat agggaacttg cgatcaagcg acttattttt ggcttaacca
    34741 aagtattgaa aacagattgt gtttcgattt taaatcattg taatgtgaat cactttcatt
    34801 taataggtga aaaatcacaa ctggttaata ccaataacgt gataaaacca ccatgtggcc
    34861 aattgattgt agttcccgaa gcaagtatgc gagtcctaga aagcaacccc actttttgca
    34921 aaaaaattat atttaaggcc ctgaatcatg aaatccactg atcctataaa aattgctgta
    34981 ttaccaggtg acgggattgg tattgaagtg actgaggcta cacttcctgt ttttgaagtc
    35041 cttgatgttc ctgtaatctt gaattatggt gatattggct gggaattttg gaaaaaagaa
    35101 ggagcagcaa tcccctccag aacatggcaa ttgatagcct cctctgatac cgttttgcta
    35161 ggagcgatta ccagcaagcc gcaacgtgaa gccaaacagg aattaagcaa cgcgcttaaa
    35221 aagagcaatc cttattatgt ttctcccgtc attcagttaa ggcaaggttt ggatcttttt
    35281 gcgaatgttc gtccctgttt ttccattgat gaccaatcaa agccgtttaa tttttgtatc
    35341 attagagaaa atagcgaagg attgtattgc ggatttgatt attttccatt accaaaagca
    35401 atacatagtt tattagcaga aagccaacat tggcaaacga ttccagctga tgaagcaagt
    35461 tgtgccttaa gattgcaatc aaaatccggt ttaacccgtt tatttgattt cgcctttaag
    35521 catgccatgc aaaccggcat gcctagagtc actttagcag ataaaccaaa tgttcttaga
    35581 gaaagcggcg aatttaccag gaaaattttt gaaagcacag cccaaagata cccgaaaatc
    35641 caggcggaca tactcaatgt cgatgccgta gcattatggt tgataaaaag cccggaaaaa
    35701 tttggagtaa tcgtcgcgga aaatatgttt ggtgatattt tatccgacgt cggagcagga
    35761 gtcatggggg gattaggcct tgcacccagt gctaatattg gcgataaagg gagttatttt
    35821 gagccagtac atggaagcgg gccaagaata agaaaaaatt gtgccaatcc atcagctatg
    35881 tttttaacga ttagcatgct gttaaatcat tttggttatc ctgaccgagc aaaaaaaata
    35941 gtcaatgccg taatgcaagt cataaaggaa aagcgtttta ttacttatga tctgggtggg
    36001 catgccacta cgacagatat ggcgaatgca gtgattgaac attgtgcgcg attgaatgcc
    36061 tcttgtttat caaaggattt taatcccacc cctaaagaaa atttaattga gtctgatact
    36121 atgcccaact tgcttcagca attaataaat tgtaattccg cagaaatttc tgatgcactg
    36181 gacgcttgtg gaatcgaagg cggattattg agtataaaac cgttatcgca gggaatgaaa
    36241 attattgggc ctgcttatac tatccaatac ttacccagag aaaaaaaagg aacagccttc
    36301 cataatgccg caaactatat agacaaggtt cccaaacatt cggtaatagt tattgacaac
    36361 aatggtcaaa ttgattgcac cgtttggggt gacctattaa cacataccgc attgagaaat
    36421 aacatcatgg gcactgttgt gcatggggca gtgagagatg tcgaatcaat tcgctcaaca
    36481 aactatcctg ttttttgtac gggaatttat atgtgctctg gtaagaatcg cgtttacaaa
    36541 gccaatgaac aatgcccttt atccattaat ggagttacaa taaatcctgg cgacattatc
    36601 tttgctgatg acaatggagt cttggtgatc ccaaatgatc gccttcagga ggtagtgaat
    36661 aaaacaattg ccataagatt aactgaggaa cgcattaaga ccgctattgc atcaggttcg
    36721 acacttgagc aagctcgaga agattattgc tatgaacaac cctggttagg tattaataaa
    36781 aaaagagagt cgtagtgttt tcgcctgaaa aattgaaatt catagacata caccaccatg
    36841 cggcccctga tctttatatt cgtcgcagaa atgcaattga agcgggaaaa ttgtatcact
    36901 ctttatatgg tgcagtcgtt ttaaaaagtc atattggcag tactggtgtt caggcaacta
    36961 ttgcgcaaga aatgggtttg cccgtttttc cttccgttgt gttaaatcat atcaatggag
    37021 gaataaatta tagagtagtc attcgcgcct tgagtgaata tcaacctctt ttttcaggta
    37081 aaatgattgt tgatttccca actatcacag gtcgtaaact tcaatcaaaa ctatcaagag
    37141 aattaactca tgataattta aaacaagata ctcaaaaggg tgaaacactg tttggatcaa
    37201 aacaacaact acgcaaagaa gtgattgata ttttaaaaat gacccgggac taccctattg
    37261 ttttaacttc aggacttgcc tcgagagatg agatttatag attgattgat gcctgtaatc
    37321 aatatgatgt tccttcatta ttattaagcc aaccatctaa tcctttaatc ggattaaaat
    37381 tcaccgaact caatgagttg attaaaaatg aatggttatg ggtggaacag actgccttaa
    37441 cttttatcct tgggtaccag gaaaaacaag atttttctca aatattaact catctccctc
    37501 gagtcattta cagctcggac ttaggacagc tcggtcaaat ggatattcca gagtggctgc
    37561 atttctcaaa aaaaatattt aatgaattgg atttatctgc aaagcgcatg gaggagctga
    37621 ctctctccaa tgccatcaaa ttactcaact tataaagttc caatcaatct attgcctaag
    37681 ctgcctcttt cgttttattg ctgctttgca aacgtttcta tggtgctcat tttctgcaga
    37741 taacctcttc tcctcaaaac gtttgcgtct tgctccaaaa caaaataacc agctgatgta
    37801 aaagtctaat atcaataaat catgcaaata actcttgcaa aaacaattga gtgctttgcc
    37861 aggaacgttg atccgctaat ttattgtaat gcagtcccat ttcatcatca ttcgcaccag
    37921 ggtcagtaaa cgaatgagct gtttggccat aaacatggac ctgccagtcc actttccttt
    37981 ctgtcatttc aatagcgaac tggttaactt gctcaattgg tactaaggga tcatcataac
    38041 catgtaatat caatactttc gcatttaatg acttattact ctcaccctct aaaggtaata
    38101 ataccccatg aaaactgaca actcctttaa gcggtgcccc ggaacgtatc aagtccaata
    38161 cgcacaaacc accgaaacaa taaccaatag cagccacttt ctcactatcc acttcaggca
    38221 actgcaccac tttgttgaag gccgcattta tacgagtgat taacttccct ctattttctc
    38281 tgaaaggagt cattaaagct cttttctctg ccttatcctt acctagcttg gcatttccat
    38341 acatgtctat agcgaatcca atatacccca tgccagcaag ctgtctcgct ttgttacaag
    38401 ctccctctcc acgccccccc caatcatgag caaccatgac acaaggtaat ggttttgagg
    38461 cactggaatg ataggcaata aaacctttgc atacagtatc accatcctca tattccactt
    38521 ccttcgtgac taacatatta atcctccttt ttaaaaggct gtccaaacag cattaatagc
    38581 tacctgtcaa agttttaata aaatgaacta cccatatata ataagaaggg ctcctgcgag
    38641 cccttcttat tatattgttt ttgaatgtta ttcgggaggt ggggtactgg ttggggtacc
    38701 actatcagaa ccgcccagtt gttgacctgt atcaggtttc gagcttggtc cagtctggct
    38761 gcctccactg ttcttacctt tccctgaaac atcacccgca ttttccgaaa tctttttagc
    38821 ttgaggcccc aatttgccaa gcatctcttg ccctttagcc cccaatttgt caccaatagc
    38881 tttctcagcc ccataagtag cttcgcctgc tttctctact ctacctttgg cttcctcacc
    38941 ccattgcatt gtttcttgac caaaagattc cggactacca cctatccatc tcagcacttt
    39001 atctggcagg tgagcaatca gtgtaaaggc tttttgtaca ataattaaat acatactggt
    39061 ataaattaag atggagaaga agaaagcata cactcctgcc cagcctgtat acccaccttc
    39121 taatgcagtt gattgataat cacctgtcaa cttatcctta aaattatccc attgcgatgt
    39181 atccatcttt gctccagtcc agttcccggc gctctggaaa aacctcttcg catcattcga
    39241 actggtgcct ttttcccatg tttctattcc ttgatccgat tggatgtagg aaatggcatg
    39301 atcaaatccg gcattcaaaa tccacacgcc aacataagac aaggcaatcg ctgcaatata
    39361 tcctattatc atcagagaag gtcttaaaaa gacattaacc aaaatcataa tggcaaattc
    39421 acctttacca aaagcctcat taccttctgg atgcgtaaca cccaaggcga caataggtgc
    39481 agccaccata gcctcgataa cggctatcag ccaggcaaat gatccaaaag tgaaaatcat
    39541 ataaggtaaa acaggtatat aatatgctgt aacaaatcct atggatacca tggtccctat
    39601 ccatgccatc aacaaaggca tagccatcat aatcaaggca aagataaaga taccaaaaag
    39661 tggtattagt gaactgacca ctgccatatt caacagcgtt agccacaaag taccagaaaa
    39721 attaatatac atcgttccca tattagccaa tgcgacaatg gggtttattc caggctgtgt
    39781 cagcgtttgc actcccacta tgaaaatatc tttcatgcct tgtaaaggaa tcattaaaaa
    39841 ggccatgacg atggaattaa tcatttctcc gaatatggct aaaaagaagt tgtacacata
    39901 cctgaaaaca tagttataaa ataagtcacc catcatacgg ccaaggcaaa acgagaagaa
    39961 caaaatcttc accctgccgc aatcaaaatc ctggtgcttc atataataaa gcgacgtatc
    40021 tactttaaaa ttaatcagat tggcaaaggt caacggtttt attcctggtt gacctggcaa
    40081 ttgaaccatc atggaattgt tgacaaatcc atagactgtt gaggacaatg gcccactcac
    40141 agactgtcgt tgaggattat cactaagatc aggttgcttg acgccatcct gacctaaagc
    40201 aggtacgcca tcgattagtg actggatttg aatcagctta tcactcttgt tttgaaacca
    40261 ggtacacaat aatgaatagg gatcctgaca cgtttttcca aagggtttgg taagctgtgt
    40321 gggatcaaaa ctactcttat ctaggcctgt tcccgtatca aattggtctg caaactcagt
    40381 tgcgcttcca ttgagtttca ccaaatcaaa aaagtaagag ccagccatga tccatccttt
    40441 ggcattggct tctgcaataa aatcacggga tttcttatca aattctttag acgtagcttg
    40501 tcttatcaga ttgagagttg gcatcataat gccattataa tcattaattg cacctaaaaa
    40561 ttcggtgcca ttaaacaata ctcctgtagt agatccggtg gaactgggta ccgaccccca
    40621 tgtttggcaa acttgttgat actcagtgca aacctcaccg gatgacttat aaggaactcc
    40681 aaactgctgt ttggcaatag cggaaaaatc attttttgag tttccggtag acgtggttgt
    40741 tgaaaacgcc ggatcattat taaccatgac ctgtgccaca gtagacaaag tcacatacat
    40801 ttgctgtatg gcaatcgcgc gagacaatcg ggctgtttgc aattgagaag aagttatatt
    40861 taagctgtta gcgcccatgg atgaattgga tccagcccct cctactgtca caagcccttt
    40921 attatcactt tgattcgttg agttcaaagc ggaaatatta ttccatttga ctgtgccgca
    40981 aatcccgttt aagaaataaa atggtgaact tttatcgaaa tttggcatgt ccagttcaaa
    41041 agaagcgggc tggtttgccg ttagatcttt aggcgtatca tcattttgtt tcttgacaaa
    41101 atttaccgta ctgatgaaat caggaatcgc tgtgcggcaa aaagtattca tttcaggagt
    41161 aggattaccc ccacaaggtg gactcttact ttgactcaaa taaagatctc tttgtgcttg
    41221 taattgtttt tgtaaaccca acatgcagat ttggccaccc aatatagtta acgctccctt
    41281 tgcaacaccg gaagacgaag atccggctgc ttgcaagctc ttggttggat cggcctgagc
    41341 ctgtattatc acgccacccc ggttgagata actcaaggcg gcttcccata ttttatcggc
    41401 tgcaccaacg ccttgcacga taacccacat aaagaatacc tgcatcatac aataaccaga
    41461 tgccttgggt attaacaaag ccaagccgaa ggtggagcga agaggaatcc agattgaaga
    41521 ccatttttgc ccgagcattt gcccttcatg ggccgtgttc atggtggaaa ccataagggt
    41581 gtacattata atgataccgc ccagcgcaag gacagcggag ttaaaaacac caaacatatt
    41641 gcccattatc tggcttccag tgccgtgcaa tacaccatcg actacaccaa ataggttacc
    41701 taaaaaaaca acggacaaat cgcttgccgg aggagcgaaa ctcaaggctc cattttcagc
    41761 cagtgcaagc gcaggaaaaa agcaaaggag gaccgtaata gctaatttat tcattctttc
    41821 tcacccaata acccttgcct gtaccattct ttaacagtac atcccaattt acgttgttta
    41881 atttggtagt accaaaaatg ataacgaaag gctagtacca atgcgatcat aaccacaacc
    41941 aagcttatta ttgtagcttt ccatgaacca tataaaaatt gataacccgt ataaataagt
    42001 atcataaaag cagcgacaac cataattatg cttagtctga acaaggcttt ttgtttgatt
    42061 accaagtcag cctcactcaa ttttaatttc ctggctgctt catcaaatga ttcgatatgg
    42121 gttggttcct gaggtatgaa taaccgttta atgccattca ccaaatacaa ggtgagtgac
    42181 ttcattctgt cccaatcgaa ccatttacga acattgataa tccttgtaaa aactcttacg
    42241 atccttgatc ctgatttctt tttcatattt tttactttt
//
LOCUS       DACVWI010000006        40628 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.006, whole genome shotgun sequence.
ACCESSION   DACVWI010000006 DACVWI010000000
VERSION     DACVWI010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 40628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40628
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.006"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            20..1438
                     /gene="ceg25"
                     /locus_tag="JBH85_01075"
     CDS             20..1438
                     /gene="ceg25"
                     /locus_tag="JBH85_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg25"
                     /protein_id="HAU0944783.1"
                     /translation="MAFYNSIPLIGKHLKSESRAKKYTSEEFKRLEREYRDHIGLPEN
                     SSFSSDAFDKLVSSRVDDFRAFPKTNLPGGLLFHDKLKEANTTEGDNIRDVLSKTVLA
                     PTEKFKTAQKNFTESTSTFKELTKLIPSKFRAQDLVGTMKELTDDARKAIIEQQAHEI
                     QMLKEKLDPQKEGQAGNYVSDFKKALGLKDNDEVKKVTEGLIKELEETHKKQLGEFDK
                     STSDSLNQLHKASASESSEYLFLANLYENNKEMRQTLEKLYAKERQRKGLPPESTTVQ
                     VGISENKIDLNGIKLKDIPVIKSITGREIHQQPDGSFAIQMPMINPFYYQDPRQNVKT
                     DMMLIAQAIKASGYDSIEMNCNFPNSEKVAMERGRQAFAACIEAGFPVDKITINVNGK
                     PMKADELFKEHPKTYQDIMSRASKISKDYEDIKAPKTSTAPVNTVVVKQEIAALRTKQ
                     QQEERAQTQPVDEQRHGVTPNN"
     gene            complement(1927..2658)
                     /locus_tag="JBH85_01080"
     CDS             complement(1927..2658)
                     /locus_tag="JBH85_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal RNA small subunit methyltransferase J"
                     /protein_id="HAU0944784.1"
                     /translation="MNRIKAVGYENNELKEKAQLLADQLNLQLDQNADTCLFVTPEKL
                     TLKIRNFSLMFADFSAMTWSKRRGEGKRQGLIRACKPTKGIKILDATAGWGKDAAILA
                     TFGADVVMLERHPVMAALLADALSRRNEADIQKMCLSLIASDAISFLHSLQEKDYPDI
                     IYIDPMHPERNKSALVKKEMQVLQQLIGTDHDAMELIELSLSHVKSRVVVKWPQKVKP
                     LLPPDASIDGKTVRFDIYMAQFSSN"
     gene            complement(2661..3191)
                     /gene="gmhB"
                     /locus_tag="JBH85_01085"
     CDS             complement(2661..3191)
                     /gene="gmhB"
                     /locus_tag="JBH85_01085"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HAU0944785.1"
                     /translation="MNRIILLDRDGVINTDSINYIKNVDELIIIPDSIIAIARLSAAG
                     YKIGVATNQSGVSRGLYSEDDLSAIHCKLREVLAEAGGQIDALEYCIHLPEDNCFCRK
                     PQPGMLKALAEKLNCSLDSVPFVGDRVSDIQAALAVGAQPIIVLSNMTDMSELAQYPK
                     VPIYNSLLQYVNQLLL"
     gene            complement(3197..5263)
                     /locus_tag="JBH85_01090"
     CDS             complement(3197..5263)
                     /locus_tag="JBH85_01090"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HAU0944786.1"
                     /translation="MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEV
                     KRFATPRRLAIVIHDLQTEQESQKVMRRGPAAIAAYDSEGNPTPALLGFAKSCSVTVD
                     ALTKIQTDKGEWIVFETQSEGTKTKDLLPGLVSQSLESLPIAKPMRWGEGDDEFARPV
                     HWAVMLYGSETLNHKILGVTSGCHSRGHRFHHPQEIRINSAASYEDQMKNAFVIADFA
                     TRRQAIIHQVQELAAPLGASVIMPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALI
                     ASMQSHQKCFALKNMHGELLPYFITVSNIASSNPKQVVLGNEKVMRARLSDAAFFFKQ
                     DKKQPLSAHIPSTEQVIFQVKLGSMYDKVQRIKAMMDHLSQSLNLPSHLAERATLLSK
                     CDLMTGMVGEFPELQGIMGYYYALNDGEEAIVATALNEQYMPRFSGDNLPSTDLGKAL
                     SLADRMDTLVGIFAIGQKPTGVKDPFKLRRHALSVVRLLISISAPLNLSTLIKEALAN
                     YGDRLPQDKNLVAELKPFILERLQSYYQNQGISADLVHAVRARQDDWLYDLDKRLFAL
                     KSFITMPEATSLSAACKRVGNILAQAAYADKKVDIKEELIEEGAEKALFDHLNKITKT
                     VETLYIAGDYQALLKLLASLKEPVDAFFDHVMVMVEEESLKQNRLAHLQRLQELLQGV
                     ADISML"
     gene            complement(5253..6176)
                     /gene="glyQ"
                     /locus_tag="JBH85_01095"
     CDS             complement(5253..6176)
                     /gene="glyQ"
                     /locus_tag="JBH85_01095"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HAU0944787.1"
                     /translation="MFFEIFMTKPTTFQEIILTLQKYWSDLGCVILQPLDLEVGAGTF
                     HPATFLRAIGPEPWSAAYVQPSRRPTDGRYGENPNRVQHYYQFQVVLKPSPLDIQDRY
                     LDSLRALGVDPLLDDIRFVEDNWESPTLGAWGLGWEVWQNGMEVSQFTYFQQVGGLVC
                     KPITGELTYGLERIAMFVLGVDNLFDLPWCKTANGIVTYGDVFHQNEVEMSAYNFEHA
                     NVEELFKQFDYYEGEAQKLIALQLPLPAYEMVIKASHTFNLLDARKAISVTERQRYIL
                     RVRHLSRAVAQAYYQAREALGFPMQKVCNGQ"
     gene            complement(6393..7178)
                     /locus_tag="JBH85_01100"
     CDS             complement(6393..7178)
                     /locus_tag="JBH85_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HAU0944788.1"
                     /translation="MKFTSLLTAGALASTLVSPAIMAADTASASLSDAQKKEIEKVIH
                     DYLINNPEVLLEASQALQQKQQQNMQQQAQAAIQENAEQVFQGKLTTVGNPKGNVTLV
                     EFFDYQCIHCKKMASTIENLVKKDSGLRVIYKEFPIFGKTSDLASRVALAAGMQGKYQ
                     AMHNALITIDKRLDEKTVMDAAKSIGLDMQKLKKDMDSQEVTDILDANRQLAEKLHLM
                     GTPAFIIGSTPDGQYKKGSEISFIPGATSEQSLRELIKKAAGN"
     gene            complement(7386..9551)
                     /gene="uvrD"
                     /locus_tag="JBH85_01105"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             complement(7386..9551)
                     /gene="uvrD"
                     /locus_tag="JBH85_01105"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HAU0944789.1"
                     /translation="MTIAALLKGLNEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIA
                     WLIEEQHLSPHAILAVTFTNKAAGEMRSRLSSMLSTPTLGLWVGTFHGLCHRLLRRHY
                     KEANLPEQFHILDSEDQARVIKRVILSLNLDPEQWQVKQAQAFINSKKDEGLRPQHIN
                     ALHYGPAKTLVAIYKAYEDVCQTSGVIDFAELLLRTHELLRDNEEILAHYRERFQAIL
                     VDEFQDTNTIQYAWIRLLAGDHTAVLAVGDDDQSIYGWRGAKVENIQQFVHDFKDTHI
                     IRLEQNYRSTAMILNAANALILNNSTRMGKELWTAGSEGEKILVYSAFNELDEARFVT
                     ERIGMELNQGASADEIAVLYRSNAQSRVLEEALLRAGIAYRIYGGVRFFDRAEIKDTL
                     AYLRLLVNPNDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSLWGASKGILQSTGL
                     GQRGSLALAKFIDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKIKGDKSESRVDN
                     LQELINAAKQFRYEYDEEEELPLVNSFLAHASLESGELQADEHERSVHLMTLHAAKGL
                     EFPIVFLVGMEEGIFPGRQSLEEPGRLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGR
                     EEYHRSSRFLREIPQQFLDEVRVKSRSQWPGTTKSKLPVADEVSGITIGQNVQHAKFG
                     QGVVLAIEGSGAHTRVQVKFSEHGVKWLVLAYANLTECL"
     gene            9772..10731
                     /gene="pip"
                     /locus_tag="JBH85_01110"
     CDS             9772..10731
                     /gene="pip"
                     /locus_tag="JBH85_01110"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HAU0944790.1"
                     /translation="MHTLYPAIKPYTQHELKVSKLHTLYLEETGNPEGIPVIVLHHGP
                     GGEADPHLRRFFDPQRYRIILFDQRGCGRSIPHLEISENNTQLLMEDIDSIRDFLGLR
                     EFVLFGGGWGSLLALLYAQKFPQQVKALLLHQIFLGRQKDIDWFYKHGASLVYPDYWE
                     EFTNTVPENKLDNIPQYYAECLQGSNELARMAAAKNWALWQARCSSLQPHLYVIDQYS
                     DPHFALALATLESYYIINHYFIEENQVIANAHKIRHIPTYIVHGRFDLVSPLSSAWEL
                     HQAIPASNLRIVRDAGHSDRESGIIDALIYASKDISKQGLDAC"
     gene            10725..11162
                     /locus_tag="JBH85_01115"
     CDS             10725..11162
                     /locus_tag="JBH85_01115"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HAU0944791.1"
                     /translation="MLTVLQRVKEARVDIDGQTVGKINHGLLILCGFEPKDSLENIKR
                     MLDKCINYRIFEDPSGKMNLSLKDVNGGLLLVPQFTLMADTQKGLRPSFSNAASPELG
                     RELFDNLLTLAQKCHQNTQSGCFGANMQVYLCNDGPVTFLLQF"
     gene            11379..12161
                     /locus_tag="JBH85_01120"
     CDS             11379..12161
                     /locus_tag="JBH85_01120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HAU0944792.1"
                     /translation="MRLILMFASIMGSVILASCASKGSNPIDPFEPFNRKVHNFNMAF
                     DATVLRPPAKLYQAVVPKLVRKGVNNAFNNLDLFPTIASDILQAEGKWVIKDSWRLFI
                     NSTIGVAGLFDVAEKFGLPPHYNDLGLTLAKWGDKKSPYLVIPFLGPSTLRDGAGWLF
                     QFALWSPYVYIDDAGLVYGLIGLRYIDLRTQFFDSEPLLNEALDKYTFIRDAYLQHRN
                     YLIAGTEQDTGTSFVEDKKANKTAMQESTASNNQLGSDYVDE"
     gene            complement(12270..13232)
                     /gene="gshB"
                     /locus_tag="JBH85_01125"
     CDS             complement(12270..13232)
                     /gene="gshB"
                     /locus_tag="JBH85_01125"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HAU0944793.1"
                     /translation="MMKLAVLMDPLDQIKPYKDSTVAMIKSAQGLGWSCAYFTLNDLY
                     CCDGGAYARVHEIHIGDIESLSWVKTIDLGNKPLRDFDVILMRKDPPFDMEYIYATYA
                     LDLAEQEGVLVANKPQSLRDANEKFFTLNFPHCCPPTFVSRDARQLKEFWQIHQQVIF
                     KPLEGMGGNSVFYVDKEGKNLSVILEVLTKGQTKCIMAQRYIPDITVSGDKRILLING
                     EPVPFALARIPAKGDLRGNLAAGARGEVVAITERDKWICEQIAPALREKGLYFVGIDV
                     IGDYLTEINVTSPTCIREISTETGLDIAGEYMRCLEKLHTSLSK"
     gene            complement(13229..14524)
                     /gene="gshA"
                     /locus_tag="JBH85_01130"
     CDS             complement(13229..14524)
                     /gene="gshA"
                     /locus_tag="JBH85_01130"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAU0944794.1"
                     /translation="MNKHEIPVPHLTTAHSGPLYHVEKIILNKLAEIESWFRKKWQET
                     PAPLTSSVDLRHAGFKLAPVDTNLFPAGFNNLNPEFLPLCIQAAQSALIEYIPDCTKI
                     LLLPESHTRNKYYLQSLNVLKTIFVKAGFIVRIGSLDPDIKEPTEIILEQGETLLIEP
                     LQRQGDKVGLDNFSPCLLLLNNDLSSGVPEILQDVQQRIRPTAKLGWASRLKSSHFQF
                     FEEVAIEFAELVGIDPWLINPYFSAIEGVDFMAQEGIETLAQEVDKILSLINDKYTTY
                     GIENKPFAVVKADNGTYGMSVMMVHNGDEIRQLNRKQRTRMSTSKGSRKVDRVIIQEG
                     VYTFETMPDGSVAEPVVYMIGQFVVGGFYRVHKGRGIDENLNAPGMHFEPLAFAQACN
                     MPCDDLEVVDCPNRFYVYGVIARLAALAAAREIAAIGGE"
     gene            14902..15798
                     /locus_tag="JBH85_01135"
     CDS             14902..15798
                     /locus_tag="JBH85_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAU0944795.1"
                     /translation="MLHFKTIQSILLLIVLGFIWGSGYTLAKFAMTNGVNPLGYAFWQ
                     SLGPALLLTLVSFFTKQTRLLHPVYWPYFFICGLIGIAIPNTNMYFIASHIPAGLLAV
                     LVNTVPLLVYPLALMAGQEKPDGWRFFALLLGMSGILAIIGINSAGLYSSWTILAMLS
                     PLGFAFCSIYIGAKQPKEINALQAANGMLLAASLLLTPVVLKQHAFYSLSAPLTLVKQ
                     IVILEIILSSLGYLLFFILIRMAGPVFYSLTGGVVAITGLFWGYLAFDEKPSSIQGMA
                     IALVVSAIFLLSWRQSKQTQGI"
     gene            15802..16083
                     /locus_tag="JBH85_01140"
     CDS             15802..16083
                     /locus_tag="JBH85_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944796.1"
                     /translation="MLSELAKQFSTQIQTFFYLIMLINGLLHFIFAGAVARDAGNLYR
                     LGQKPVLVSAPTWAFATLIGGVITATIYWLLHHSTLTRPTMREIRYDKA"
     gene            16070..16420
                     /locus_tag="JBH85_01145"
     CDS             16070..16420
                     /locus_tag="JBH85_01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HAU0944797.1"
                     /translation="MTKHKIKTIDVHELKHQMDNQANLSLIDVRELDEWEMMHIPGAL
                     HIPKDRISLEIQNQIPNKEQTIYLHCRSGVRSLYAAQCLMDLGYYEVYSVDGGIMAWA
                     MSGYPVKQESYTPS"
     gene            complement(16444..17106)
                     /gene="lem14"
                     /locus_tag="JBH85_01150"
     CDS             complement(16444..17106)
                     /gene="lem14"
                     /locus_tag="JBH85_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem14"
                     /protein_id="HAU0944798.1"
                     /translation="MSFELVAYEKLKGSIRESIITLIKSHNEKAKIIEDKLEYSVKEV
                     SRERQPQVLVLLKTIELLDNSSKEPEDKARVLNALAYYIRDQIAATYKYTSPDNSDFY
                     KSLTISLDLNKDNNPNREDLADMYSALEKFLRSHVYKNSDPRKGYLDKQPFAIKHYSV
                     VDDILELSDRVHKLRHEIIIAARDLHLLQQKPKSSQGGLFSVPSGKEKVTDTHEVANH
                     RL"
     gene            17452..19113
                     /locus_tag="JBH85_01155"
     CDS             17452..19113
                     /locus_tag="JBH85_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HAU0944799.1"
                     /translation="MQYMMVIKMKKISCSILLLINSLISYADSDQPKLILQIVVDQLR
                     GDLIYRHHKQFGPSGFNYLLAHGLDYHNAHHPHANTTTCAGHSTIATGSYPSLHGIVD
                     NDWYDRKTRKLKYCMEDLQAKILPTVHTHIEISGRSPRNLKPSTLSDEIILANKGKAF
                     GVSLKDRAAITLAGHAGKAFWFDKTNGGFITSTYYYSSYPLWVENWNKHYQPKAYDWN
                     LSHPKSFYQNANTLPFRHNYGSFGQTFPHHVTNPPSEEYFKSLSRTPKADELTADFAK
                     QLLVNEKLGKTTGQTDYLAISFSAVDAIGHQFGPNSLEAEDNLIALDDTLSQLFKTID
                     KEVGLNNTLIILTADHGVSDGPSYLKAHKIPEIKPVNIEATGKHIENLLLKRFNLPAQ
                     ALMSINPPFIYLDHQIIKEKNLDIAEVSFYLAEEISHLPGIFKAYPLPIRDIEKDWLS
                     AKVDRMSYAYRAGDVYIVQPPYQSHGAKSEDRVAHGSPWQYDTYVPLLFVHPDFKPKR
                     IFRQVHTTDIAPTLSSLLLIKPPAAAVGQPLVEVVNAFHKTGEND"
     gene            19082..19804
                     /locus_tag="JBH85_01160"
     CDS             19082..19804
                     /locus_tag="JBH85_01160"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HAU0944800.1"
                     /translation="MLFIRLERMIEFQLKKLYYSYKIFNENIMTKQAIIIGISGPSAS
                     GKSLLANTIVNELGSEQVVVISEDAYYKDNGHLPFTEREKINYDHPDSFDHALLYEHL
                     RQLRVGNTVQIPIYSHSKHLRLPETRAVGQHAIIVLEGILLFSDKALREIMDIRIFMS
                     TPLDVCLTRRLKRDVVERHRSFESVIHQYETTVRPMYMQFIEPSSRYADIIVPRGGEN
                     RIAIEMIQAKMRELLASHTRGS"
     gene            19900..20706
                     /locus_tag="JBH85_01165"
     CDS             19900..20706
                     /locus_tag="JBH85_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HAU0944801.1"
                     /translation="MGGDTIVGFLTGKKALIVGLASNRSIAYGIAKAFHNQGAELAFT
                     YQNEKLQSRVETMASEFNSTLVFPCDVASDEEIKAVFDNLRNHWDKLDILVHSVAYAP
                     ADQISGDFVECANREGFRIAHDISAYSLIGLSQAALPMMLDTQGSILTLSYYGAEKAV
                     PNYNVMGVAKASLEASVRYLAASLGSRGLRINAISAGPIKTLAAAGIKDFRKIHAAYA
                     NITPLQRNVTADEVGNTAAFLCSDLASGITGEVLHVDAGYHAVSAMSELG"
     gene            complement(21244..23118)
                     /locus_tag="JBH85_01170"
     CDS             complement(21244..23118)
                     /locus_tag="JBH85_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HAU0944802.1"
                     /translation="MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKV
                     IVNDRPITMQAFETNYRRTRAQQDLPQMTAADEKNLQNQVLNQMITNEVSIQAARKYG
                     FEVSPEQANAAIVQIPQFQEDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRF
                     AFMGTSFALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKF
                     MTLEQVTLDYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPEN
                     ATKEEQDSIKQKADEVYSDLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYD
                     RVLSNLTRPGQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIMDQLTSDMAQAKY
                     AQVLEQLTDLSYQTPDSLDPVLDSLKLKIQHTEPFSRDGGKQPITKNKQVIHAAFSTD
                     VLELGNNSEPIQIDNDSVIVLRVKKHIPSREQTLDEVRDQIKKILAKQYGDAKAKEIG
                     SSLLHPVEDKQQQELIANNQFEWHSVENASRDSDKANSLINDLAFNLLRPESRDGVIL
                     DNGDYVVVKLKRINDGKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIERK
                     "
     gene            complement(23210..23286)
                     /locus_tag="JBH85_01175"
     tRNA            complement(23210..23286)
                     /locus_tag="JBH85_01175"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23250..23252),aa:Asp,seq:gtc)
     gene            complement(23293..23368)
                     /locus_tag="JBH85_01180"
     tRNA            complement(23293..23368)
                     /locus_tag="JBH85_01180"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23333..23335),aa:Val,seq:tac)
     gene            complement(23376..23678)
                     /locus_tag="JBH85_01185"
     CDS             complement(23376..23678)
                     /locus_tag="JBH85_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HAU0944803.1"
                     /translation="MINCKGEKMNKSELVDAIASGSGLTKADASRVLETFMATVTDVL
                     KKGDQVVIPGFGSFSTGNRSARTGRNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA"
     gene            complement(23783..26233)
                     /locus_tag="JBH85_01190"
     CDS             complement(23783..26233)
                     /locus_tag="JBH85_01190"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HAU0944804.1"
                     /translation="MSNENEIISNETVKSSALPVLPLRDVVVYPHMVIPLFVGRGKSI
                     KALEAAMIDNKQIFLVAQRKSAHDDPGPEDIYQVGTVSSVLQLLKLPDGTVKVLVEGE
                     QRARVKEYTQDKGYLEATLEYIEEVGSTIQEQEIGILMRSLMSQFEQYIKLNKKIPPE
                     VLSPLAGIEEPGRLADTIAAHLTLKVDDKQELLETMDVGTRLEKLMAAIENEIDLLHV
                     EKRVRGRVKRQMEKSQREYYLNEQIKAIQKELGEMGEEGNEIEQLENSIKKAGMPKEA
                     KEKSLAELHKLKMMSPMSAEATVIRNYLDWMLMVPWKKRTKIQFDLLKAEKLLDKEHH
                     GLEQVKERIIEYLAVQQRVKRLKGPILCLVGPPGVGKTSLGQSIANATGRTFIRIALG
                     GVRDEAEIRGHRRTYIGSMPGKIIQKLCKAGVKNPLIMLDEVDKMAMDFRGDPASALL
                     EVLDPEQNHTFSDHYLEVDYDLSDVMFIATANSLEIPAPLLDRMEVIRLPGYTEDEKV
                     SIAEKYLVPKQMLLNGLTNEEIHISEGAIRDIIRYYTREAGVRNLERDIASICRKVVK
                     EILSSKKGKKGKTISITVSNITKYLGVKKYRYGLAEQYDQIGQVTGLAWTSVGGELLT
                     IEASIMPGKGKVTHTGQLGEVMQESIHAAMTVVRSRAKAFGLPDDFYEKHDFHVHVPE
                     GATPKDGPSAGIGMCTVLVSIVTQIPVKADVAMTGEITLRGQVLPIGGLKEKLLAAHR
                     GGIKHVIIPEENVKDLEEIPDNVLRKLTIHPVNTIEQVLELALQRNPWVEEPTNIQPG
                     TILNKRSKKIKNNDLHAH"
     gene            complement(26471..27751)
                     /gene="clpX"
                     /locus_tag="JBH85_01195"
     CDS             complement(26471..27751)
                     /gene="clpX"
                     /locus_tag="JBH85_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HAU0944805.1"
                     /translation="MVMSKSGNGNGDKVLYCSFCGKSQHEVKKLIAGPSVFVCDECVE
                     LCNDIIREETHETHEETEARLPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQH
                     KSEDGVELGKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VASVPPQGGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSK
                     KSSNDEVSKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALT
                     KQFQSLFKMEGSELEFRGEALIAIAKKALERKMGARGLRSILENILLDTMYDLPSLEG
                     VNKVVIDESVVNGLSKPILIYEQDEKKSASGSKD"
     gene            complement(27886..28530)
                     /gene="clpP"
                     /locus_tag="JBH85_01200"
     CDS             complement(27886..28530)
                     /gene="clpP"
                     /locus_tag="JBH85_01200"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HAU0944806.1"
                     /translation="MPGYSDNIIRNASGLIPMVIEQTSRGERSYDIYSRLLKERIIFL
                     LGEVEDHMANLVVAQLLFLESENPEKDISLYINSPGGVVTAGLAIYDTMQFIKPDVST
                     LCIGQAASAAALLLCAGAEGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRE
                     RLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLYDRQVAGHSTDL"
     gene            complement(28533..29864)
                     /locus_tag="JBH85_01205"
     CDS             complement(28533..29864)
                     /locus_tag="JBH85_01205"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HAU0944807.1"
                     /translation="MQVSVETLEGLERKVTVSVPTEKVEEEVSSRLRNLARKVKIDGF
                     RPGKVPFNVVKSRFSDSVREEVAREMVQSTLYEALQKNELVPAGYPHVEPLEIEPGKD
                     FKYTAVFEVMPVFEIVELNQAPVELIRSEVTDKDVDNMIEKLREQNKEWHEVTHAVKK
                     GDKVVIDFQGFLDDKPFQGGSAEGYELVIGSGSMIPGFEDGIVGGKIDKPFDIKVSFP
                     EDYGHKDLAGKEATFKITIKKIMEGKLPALDEAFAEKFNIKEGGIESLKKDIRENMAR
                     ELERRVNMMNREKLFDSLMSVNHVELPIALIDKEIEHLKHDMYHRLFGHEHKDDEKIP
                     DFPRELFEEQAKRRVHLGLLFAEYVKKHEIVADNDKVNAMIDKFASAYESPDELRAWY
                     QSSKEHMAEVEALVMEDMVADKIAEDAKLKYKNMDYDSVMNPKKGTEKKGE"
     gene            complement(29894..29978)
                     /locus_tag="JBH85_01210"
     tRNA            complement(29894..29978)
                     /locus_tag="JBH85_01210"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29942..29944),aa:Leu,seq:tag)
     gene            complement(30069..30144)
                     /locus_tag="JBH85_01215"
     tRNA            complement(30069..30144)
                     /locus_tag="JBH85_01215"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30109..30111),aa:His,seq:gtg)
     gene            complement(30306..30382)
                     /locus_tag="JBH85_01220"
     tRNA            complement(30306..30382)
                     /locus_tag="JBH85_01220"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30346..30348),aa:Arg,seq:tct)
     gene            complement(30388..30464)
                     /locus_tag="JBH85_01225"
     tRNA            complement(30388..30464)
                     /locus_tag="JBH85_01225"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30428..30430),aa:Pro,seq:tgg)
     gene            30726..31952
                     /locus_tag="JBH85_01230"
     CDS             30726..31952
                     /locus_tag="JBH85_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAU0944808.1"
                     /translation="MIMKTKLLPLFDNLNHIHKNHENVILPDARFHNDFTYCLSFLKS
                     YIGSEGTFNSYRRETERLLQWSWLVKNSTIDSLRRDDIEQYIHFCQNPPKTWISLKKV
                     PRFIEKNGNRIPNEEWRPFVVTLSKVSRKNGHLASIDQFKLSQGAVQEIFAILSTLFN
                     FLIAEEYLISNPVALIRQKSKFIRKRQHNAPVRRLSLVQWEAVLRAAESLAEDSPEKH
                     ERTRFILSLLFGMYLRISELAASERWVPSMNDFAKDSNGHWWFTTVGKGNKERQIAVS
                     DAMLESLTRWRLFLGLTPLPSPADNSPLLPKLRGHGPMSDTAPIRRIVQHCFDLAEEQ
                     LRLNGLSEEADNLSAATVHWLRHTGISEDVKIRPREHVRDDAGHSSSATTDRYIDIEK
                     QARYQSARKKIIQPSE"
     gene            32048..33925
                     /locus_tag="JBH85_01235"
     CDS             32048..33925
                     /locus_tag="JBH85_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAU0944809.1"
                     /translation="MISSSLRYNMLTLRQITLSRGDKILLDKVNVSLYEKQKIGLIGH
                     NGCGKSTLFDFLLGQLSPDTGEYLINPQLSISHLSQHIPDSNEKALDFVLAGDQQYIK
                     LLKRLSEAEKNGDDAEVLQCHEELSHTGGYSKPAQAAVIMSGLGFSGNQQQEPVNSFS
                     GGWRMRLNLARCLMKPADLLLLDEPTNHLDMEAIFWLERYLKQSPSTIILISHDREFL
                     DAFVTHILHIENRNLTLYSGNYSSFEKTHAQQLALQQAMHEKQQTKIKHMMTFVTRFK
                     AKAAKAKQAQSRMKAIEKMEIIAAAQADSPFSFDFFPCPRAGNPLIQCNQVDAGYINH
                     PPILKKIKLSLNPGDRIALLGPNGEGKSTLIKTLTADLPVLSGDIHRSPHLQIGYYAQ
                     HQLEQLNCKLSPVETLQTLSPEVREQTIRDFLGGFNFRGDMAVQSIQHFSGGEKARLA
                     LARLVWLKPNLLLLDEPTNHLDLGMRSAIELALQTYEGALILISHDRHLLKSSVDNFY
                     LIYQGKVQPFEGDLDDYYLWLQTRNSEKESKLATSPNEYKERKSYQNKLKKLEQLIEH
                     YQNQLRLLDKQLADVSLYEDTKQKSKLDNLLMERDIAHSSLMKTEEEWLEICNALENL
                     E"
     gene            complement(33953..34627)
                     /locus_tag="JBH85_01240"
     CDS             complement(33953..34627)
                     /locus_tag="JBH85_01240"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HAU0944810.1"
                     /translation="MKINLERLCRRLNYHFNNIAYLKQALTHCSAGSDNYERFEFLGD
                     SILSFVIANELFNRFPLHSEGQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQGELRS
                     GGFRRTSILADALEAILAAIYLDGGMIAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQ
                     EFLQASKFALPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAM
                     LEQLQG"
     gene            complement(34617..35009)
                     /locus_tag="JBH85_01245"
     CDS             complement(34617..35009)
                     /locus_tag="JBH85_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4845 domain-containing protein"
                     /protein_id="HAU0944811.1"
                     /translation="MRKQQGMTLIGMLFTAVVVIMVGILVMRAVPVYIQHYSILHSIK
                     ALNSTPVSSLSGDPLTDVTTLRESVTKRLDINGVEDLKPGELVITPSGPNKFKIKLKY
                     QVIKPLIYNMSLLFNFEDNFEVITGSEN"
     gene            complement(35021..35803)
                     /gene="lepB"
                     /locus_tag="JBH85_01250"
     CDS             complement(35021..35803)
                     /gene="lepB"
                     /locus_tag="JBH85_01250"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HAU0944812.1"
                     /translation="MLKIEDIEFMNFALILVILSAVTGLIALLDWLIWSKKRLPEQKP
                     GRMIEYSRSFFPVFFIVLLLRSFLVEPFRIPSGSLEPTLLVGDFVAVNKFSYGLRLPV
                     WEKKIVPIANPKTGEIAVFRWPPEPSYDYIKRVIGVPGDKISYHDKKLTINGKEVKQT
                     FVEYTTDESSGKAVTKYKEDLNGVVHDIFVRPDAPAVDFDIVVPEGNYFMMGDNRDDS
                     ADSRFWGFVPDSYLRGKAFLVWMSWNGKTDNVRWSRIGRLIH"
     gene            complement(35884..37716)
                     /gene="lepA"
                     /locus_tag="JBH85_01255"
     CDS             complement(35884..37716)
                     /gene="lepA"
                     /locus_tag="JBH85_01255"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HAU0944813.1"
                     /translation="MLFARRLEQLKDLNRIRNFSIIAHIDHGKSTLADRFIQICGGLT
                     EREMSSQVLDSMDIERERGITIKAQCVSLNYTAKDGKTYLLNFIDTPGHVDFSYEVSR
                     SLAACEGAILVVDAAQGVEAQTLAVCYTAIDQSLTVLPVLNKIDLPQAEPERVISEIE
                     DIIGLDAQDAIRVSAKSGLGVNDVLEALVANIPPPKGDVHAPLQALIIDSWFDSYLGV
                     VSLVRIVNGAIRKGDKMRVMSTGRAYEVDQVGIFTPKRTKLDALYAGEVGYVVAGIKE
                     IQGAPVGDTLTLDRNPADKVLPGFQRVKPQVYAGLFPVSSDDFEAFREALAKLSLNDA
                     SLFYEPESSEALGFGFRCGFLGMLHMEIIQERLEREYNLDLISTAPTVVYQIVTQKGE
                     TLLIDNPSHLPPTPQIKEMYEPIVRANILVPQDYLGPIITLCVERRGVQVSMTYSGRH
                     VSVVYDIPMSEVVSDFFDRLKSVSRGYASLDYNFQRFQIADLVKMDILINSERVDALA
                     VIVHRDSAHSRGKLIAEKMQQLIPRQMFDVAIQAAIGSHIIARQTVKALRKNVTAKCY
                     GGDVTRKRKLLEKQKAGKKRMKQVGHVEIPQEAFMAVFQTDKKK"
     gene            37884..38927
                     /gene="mltB"
                     /locus_tag="JBH85_01260"
     CDS             37884..38927
                     /gene="mltB"
                     /locus_tag="JBH85_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HAU0944814.1"
                     /translation="MLCNDTGYMMRQIIWLGFISLFLLSFTTYSDTTFTKRKDVQSFI
                     NMMVTNYHFNRNQLTTVMNQVKLQPQVIESMEKPYEKKNWDVYRELFLTQKRLKSGLQ
                     FWAENQKTLEKIQRRYGVSPEIIIAILGVETMYGERQGEYRVLDTLATLAFNYPKRSA
                     FFTKELKEFFLLCREQHVSPTQYKGSYAGAIGKPQFMPSSYRYYAVDFNNNGRRDLVN
                     DNGDSIASIANYLHKHGWNLNQGIAQPAKISGWRYKQLRMNPKTANYRYSQLISYGVK
                     PITASQNHPPRAGVIELVTRKGKEYWIAYPNFFVITRYNSSPQYALAVYLLSQQLKQH
                     WYTSATKKHRAYV"
     gene            39002..40141
                     /locus_tag="JBH85_01265"
     CDS             39002..40141
                     /locus_tag="JBH85_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general secretion pathway protein GspL"
                     /protein_id="HAU0944815.1"
                     /translation="MDKCFIFSKHLDDNGCVCLKISDLGELIAPPEFRNFSQIKDLQK
                     ESSTIIVETCTRAILLGLAIPWLPERKARIAIPYALEDKVTQPVEELHFAFDKFYYQN
                     NQYLVVVIDKQRMKKLIQVFDEHGIEFDAVTLDWFALASQELIISESELLINNEDFKG
                     VLSGDLAQTYLKNHPHTPAHLFQDSKIPVASPASQNEEHSYTWISKRLIKSKPLNLCQ
                     GEIQHGKTTDWVKKGYLLVGGLCGFWLISILFVNWLSLHWLNRQIDEIDRQTAVIYRE
                     FFPDAKQVISPKFRISQLLGGSTAENQTRFWFILNQLSKAIKDSGITVEQLRYQNKTI
                     SITLVSSDFESLQKIENKLKQSQLKVKQTQASTKDQQVVATLELT"
     gene            40138..40608
                     /locus_tag="JBH85_01270"
     CDS             40138..40608
                     /locus_tag="JBH85_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein M"
                     /protein_id="HAU0944816.1"
                     /translation="MKTYLNTLNDREKWMVIVAGVSLFIYGYYLLLYTPLSNQVNQKS
                     TQLIEKTETLEWMKQVRMQKRSAKRKESVDNSQLLTILASQLKNNKTLKFPYQLQQTG
                     SGDVQLTFDAVPFQNFIQWLAKINEVYSINIKQFDVEKTSTPGVTRLMIILSTS"
BASE COUNT        12575 a         8584 c         7094 g        12375 t
ORIGIN      
        1 ccttattgag gtatttgata tggcttttta taattctatc cctttaattg gtaaacattt
       61 aaaatcagag agccgtgcaa aaaaatacac ttctgaagaa tttaaaaggc tagagagaga
      121 atacagagat catatcggtt tgccagaaaa ctcaagcttt agttctgacg cattcgataa
      181 gcttgtcagc tccagagtag atgatttccg ggcttttccg aaaaccaact tacccggggg
      241 attgctgttt catgataaac tgaaggaagc caatactacc gaaggggata atatccggga
      301 tgtcttaagt aaaacagtcc tggcaccaac tgaaaaattt aaaacagcac aaaaaaattt
      361 tacagaatca acttcaacat ttaaagagct aaccaaatta attccaagca aattccgagc
      421 ccaggatctt gttggcacca tgaaggaact gactgatgat gctcgtaaag ccataataga
      481 acagcaagcg catgaaatcc aaatgttgaa agaaaaattg gatccccaga aagaaggaca
      541 agctggtaat tacgtatccg attttaaaaa agcactgggt cttaaggata atgacgaagt
      601 taagaaagtt acagaaggct tgattaagga attggaagaa acccataaaa aacaactggg
      661 tgaattcgat aaatccacaa gcgactcgtt aaaccaacta cataaagcct ctgcgagtga
      721 atcatcagag tatctgtttc ttgccaatct gtatgaaaac aataaggaaa tgcgtcaaac
      781 gcttgaaaag ttatatgcca aagaacgcca aagaaaaggg cttcctcctg aatctacaac
      841 agttcaagta ggtatatcag aaaacaaaat tgatctcaat ggaatcaaac tcaaagatat
      901 tcctgtcatt aaaagtatta cagggagaga gattcatcaa caaccggatg gcagttttgc
      961 aatccagatg ccgatgataa acccattcta ctatcaggat ccaaggcaaa atgtcaaaac
     1021 agacatgatg ctcattgctc aagctataaa agcttcaggt tatgactcta ttgaaatgaa
     1081 ttgtaatttt ccaaatagtg aaaaggtagc gatggaaagg ggcaggcaag cttttgccgc
     1141 ctgtattgaa gcgggatttc ctgttgacaa gatcaccatt aatgttaacg gcaaacctat
     1201 gaaggcggac gaattgttta aagaacatcc gaaaacatat caggatatta tgtcaagagc
     1261 ctcaaaaatc tcgaaagatt acgaggacat caaagcgccc aaaacatcaa ctgccccagt
     1321 gaacactgta gttgtcaaac aggaaatcgc cgcattacgc accaaacagc agcaagaaga
     1381 acgagctcaa acacaacctg ttgatgaaca acgacatggc gtgaccccca ataattgact
     1441 tataagttga atttggatta aacaatccaa attcaacaaa ttcattatcc tccccgaaat
     1501 ttgctcaaaa aatttcacta cctcaaacca tcaatttctg atattttatc cattgtagat
     1561 actttatttt taaatgacag attctattta cgccgcttat tagaagtatc cataaagcag
     1621 ataccgttta ccttggataa actgtgtcaa taatgctatt tgaggtggca tttaaaaata
     1681 aagtgccagt ataactattc aaggtatttt ggtatcatcg agaatagata tggaattcaa
     1741 cgggttagct aaggagaaag ctatgagtac tcgtcgcttt gatgaatttg acaatgaaat
     1801 ggatgatttt agtgatgctg aacctgttat aactgaggca agcccttcaa caaaattgga
     1861 aagacgtaga aaaatagaag atctgttgga ggaaaagcgg ttaagagaag aactggaaga
     1921 gtttggttag ttggaagaaa attgagccat ataaatgtca aaccttacag tcttaccatc
     1981 aattgaggca tctggcggga gtaatggttt taccttttgt ggccacttga ctacaactct
     2041 tgacttaaca tgagataaag acaactcgat taactccatt gcatcatgat ccgttccaat
     2101 taattgctgc aaaacttgca tctctttctt aaccaaagcc gatttgtttc gttctgggtg
     2161 catgggatca atgtaaataa tatcgggata atccttttct tgcaaactat gcaggaatga
     2221 aatagcgtca cttgcaatca aagacaaaca cattttttga atgtccgctt cgtttctacg
     2281 agatagtgca tcagcaagca gtgcagccat gaccggatga cgttccagca taaccacatc
     2341 ggcaccaaaa gttgccaaaa tagcagcatc ttttccccaa cctgccgtag catccaaaat
     2401 tttaatccct tttgttggct tgcaagccct gatcaaaccc tgtcttttac cctctcctct
     2461 tcttttactc caggtcatag cactgaaatc agcaaacata agagaaaaat ttcgaatttt
     2521 taaagttaat ttttcaggag taacaaaaag gcaggtatca gcattttgat ctaactgtaa
     2581 attcaattga tcagctaaca attgtgcttt ttctttgagt tcattgtttt cataaccaac
     2641 tgcttttatt ctattcattc ttacaataat aattgattga catactgtaa cagagaatta
     2701 taaattggta ctttaggata ttgtgccaac tcagacatat cagtcatatt agaaagtaca
     2761 ataataggct gggcaccaac tgccaatgct gcttgtatat ctgaaactct atcccctaca
     2821 aagggcacgc tatccagtga acaatttaac ttttctgcca gagcctttag cattcctggc
     2881 tggggttttc ggcaaaaaca gttgtcttca ggtaaatgga tacaatactc taaggcgtca
     2941 atttgccccc ctgcttctgc aagtacctct ctcaacttac aatgaatggc agataaatca
     3001 tcctcagagt acagccctct tgaaactcca gattgattgg ttgcaacacc gattttatat
     3061 ccggcagcac ttaaacgagc tatggcaata atgctatcgg gtataataat aagctcatca
     3121 acattcttga tataattgat tgagtcagtg ttaattactc catctctatc aagcaatata
     3181 attcgattca taagtgctac aacattgaaa tgtcagctac accctgcaat aactcttgta
     3241 atcgctgcag gtgcgcaagc ctgttctgtt tcaatgactc ctcttcaacc ataaccatca
     3301 catgatcaaa aaaagcgtct actggctctt taagactggc cagaagctta agtaatgctt
     3361 gataatctcc ggcaatgtat aaagtttcta ctgttttagt aattttatta agatgatcaa
     3421 ataatgcttt ttcagcgcct tcctctataa gctcttcctt aatatctact tttttatccg
     3481 catatgctgc ctgagctaag atattgccaa cacgcttaca agcagctgat aatgatgtcg
     3541 cctctggcat agtgataaat gactttaaag cgaatagacg cttatctaaa tcatataacc
     3601 aatcatcctg acgagcacgg acagcatgaa ccaaatcagc gctgatacct tgattttgat
     3661 aataagattg aagtctctca agaataaatg gttttaattc agccactaaa ttcttgtctt
     3721 gagggagtcg atcaccataa ttagccaagg cttctttaat caaagttgat aaattaagcg
     3781 gtgctgatat tgaaatgagt aaacggacta cagacaaagc gtggcgtctt aatttaaaag
     3841 gatcttttac tccagttggc ttttggccaa tcgcaaaaat acccaccaga gtatccatac
     3901 gatccgccag ggaaagtgcc ttgcccaaat cagtggatgg taaattatca ccagaaaatc
     3961 taggcatgta ttgctcattt aaagcggtag caacaatagc ttcttcgcca tcattaagag
     4021 cataataata tcccataatc ccttgcaatt caggaaactc gcctaccata cctgtcatca
     4081 aatcacactt gcttaataat gtagctcgct cagccaggtg agagggtaaa ttgagagact
     4141 ggcttaaatg atccatcatt gcctttattc gttgtacctt atcatacatg cttcccagct
     4201 ttacttgaaa aataacctgc tccgtagaag gtatatgcgc gcttagcggc tgtttcttat
     4261 cttgtttaaa gaaaaaggca gcatcactta atcttgccct cattaccttc tcatttccta
     4321 aaactacttg ttttggattg gaactggcga tatttgatac cgtaataaaa taaggtagca
     4381 gctcaccatg catatttttt agtgcaaaac acttctgatg agattgcatg gaagcaataa
     4441 gggcttcagc aggaacctct aaaaactcct gttcaaaatt tgcaatgagc gcttgaggcc
     4501 attcgactat tgaggtgact tcatcaacca attcttcagg cataatcact gaagcaccta
     4561 gaggtgctgc taattcttgt acctgatgga taatggcttg tcgcctagta gcaaaatcgg
     4621 caattacaaa agcatttttc atctgatctt catagcttgc agctgaattt attcttattt
     4681 cctgaggatg atgaaaacga tgtcccctgc tatgacaccc acttgtaacg cctaaaattt
     4741 tatgattgag tgtctcactt ccataaagca tcacggccca atggacaggt cgggcaaatt
     4801 cgtcgtctcc ttctccccat ctcatgggtt ttgcgatagg taaagactct aaagattgac
     4861 taaccaatcc aggcaagaga tcttttgttt tagtaccctc actctgagtt tcaaaaacaa
     4921 tccattcacc tttgtcagtt tgaatcttgg tgagcgcatc taccgtaaca ctacatgatt
     4981 ttgcaaatcc taacaaagca ggggtcgggt taccttcact atcgtatgct gctattgcag
     5041 caggaccgcg tcgcatgact ttttggcttt cctgttcagt ttgtaagtca tgaatcacaa
     5101 tagccaggcg tcttggtgta gcaaatctct tgacttcacc ataacttaat tgcgccttat
     5161 ctaatgcggc taacaatcga gtagaaaact catttgccaa aggccaaaca gcaccagaag
     5221 gcagctcttc acatcctaat tcaaaaataa aatcattgac cattacacac cttttgcata
     5281 gggaaaccta acgcctcgcg cgcttgatag taagcttgag ctactgctct tgatagatgt
     5341 cttacacgta atatatacct ttgccgctct gtcacagaaa ttgctttacg tgcatccagt
     5401 aagttaaaag tgtgagaagc ttttatgacc atttcgtaag caggaagagg taattgcaaa
     5461 gctatcaatt tttgtgcctc tccttcataa taatcaaatt gcttaaataa ttcttcaaca
     5521 ttggcatgtt caaaattata agctgacatc tctacttcat tttgatggaa tacatcccca
     5581 tatgtcacta tgccattagc cgttttacac caaggcaaat caaataagtt atctacccct
     5641 aaaacaaaca ttgcgatacg ttccaaacca taggttaatt caccagtgat tggtttacat
     5701 acaagtccgc ccacttgttg aaaataagta aactgagaca cctccattcc attttgccaa
     5761 acctcccaac ctaagcccca tgcgcctaga gttggtgatt cccaattgtc ttcgacaaaa
     5821 cggatatcat ccaataaggg atctactcca agtgcgcgta acgaatccaa gtatcggtct
     5881 tgtatatcca atggcgacgg ttttaatacc acctgaaatt gataataatg ctgaacccgg
     5941 tttggatttt ctccataacg accgtccgtc ggccttctgg atggctgaac ataagctgct
     6001 gaccatggct caggtccaat cgctcttaaa aaagtagctg gatgaaaggt acccgcgcca
     6061 acttccagat ccaaaggttg caaaataaca caaccaagat ctgaccaata tttttgcaag
     6121 gtcagtataa tttcctgaaa agtagtaggt ttagtcatga aaatctcaaa aaacaaatat
     6181 gatctttaaa tataggttgg tttttaatcc ttatatccag gatatatccc acaaaaccta
     6241 tctttcattt agagaattaa ttattcagtc caataaatta ttggagtgtt gggtgacaga
     6301 gttgattgag ctcaacgcta caacactaaa atactatccc agttgaggac aactgggaca
     6361 tataaattta atccaaatat ttagataaat acttaattgc cagccgcctt tttaattaac
     6421 tcacgtagtg attgctcgct tgtagcgcct ggtataaatg atatttcact gcccttttta
     6481 tattgaccat ctggtgttga gccaattata aaggctggtg tacccatcaa atgtaatttt
     6541 tcagccaatt ggcgattcgc atccaggata tcggtcactt cctgactatc catatctttt
     6601 ttcagctttt gcatatccaa acctatggat tttgcggcat ccatcactgt tttttcatcc
     6661 aaacgtttgt ctatcgtaat caaagcatta tgcatagcct gatatttgcc ttgcatgcca
     6721 gccgccagag caactctgga agccagatca gaagtcttgc caaagattgg aaattctttg
     6781 tatataactc gtaatccgct gtctttttta accagatttt caatggtaga tgccattttt
     6841 ttgcaatgaa tgcattgata atcaaaaaac tcaaccagtg ttacattccc tttaggatta
     6901 ccaacagtag ttaatttgcc ttgaaaaact tgttcagcat tttcctgaat tgcggcttga
     6961 gcttgctgtt gcatattttg ttgctgtttt tgttgcaatg cttgcgaagc ctccaataaa
     7021 acttccgggt tattaatcag ataatcatga atgacttttt caatttcctt tttttgagca
     7081 tctgataaag aagcgctagc cgtatcagct gccattattg caggtgatac taatgtagag
     7141 gctaatgctc cagctgttaa taaacttgta aatttcacgt aattcccctt acttataatt
     7201 aatcaatgac gcaaattaca tctcgcagat aactttatca ttaattgatc tgctcaaaac
     7261 agcaaagtat aacaaatttc tgttgcctaa cgcaccctag cattcatgaa aaaaaaattc
     7321 aatattacaa tagcaaactg caagtcaggg tacctcagat attttataaa aattaaatgc
     7381 aataactaca ggcattcagt caaattagca taggccaaaa ccaaccattt tacaccatgt
     7441 tcactgaatt ttacttgaac tcttgtatga gccccgctgc cctcaatggc aagaacgaca
     7501 ccctgtccaa atttggcatg ctgcacattt tgcccaattg taatgcccga cacctcgtca
     7561 gccactggca atttgctttt tgtagttcca ggccactgag aacgtgattt aactcttact
     7621 tcatcaagaa attgttgagg aatttcacgc aaaaatcttg atgatctgtg atactcttca
     7681 cgaccatatt gtcttctgac ctcagcatag gataaaacca atttacgcat ggcacgagtc
     7741 atgccgacat aacataatcg acgctcttcc tccaagcgac caggctcttc aagcgattgt
     7801 ctgcctggaa atattccttc ttccatacca accaaaaaca caatcggaaa ctcaagccct
     7861 ttggctgcat gtaaggtcat caagtgaacg gagcgttcat gttcatcagc ctgcaattcc
     7921 cccgattcta atgaagcatg agcaaggaat gaattaacca acggtaactc ctcctcttca
     7981 tcgtactcat atcgaaattg tttggcagca ttaattaatt cttgcaggtt atccacacgt
     8041 gattctgatt tatcaccttt gattttgcta aagtgggcgt ataaaccact atgctgtatt
     8101 acatcagaga tctgctcatc caactcctta ttagcaacca caacctgtaa tttttcgatc
     8161 aaatcaataa acttggctaa tgccaagctc cccctttgcc ctaatcctgt ggattgaagt
     8221 atgcccttgg aagcgcccca caacgaacac tgttctgctc tggcgtactg gcgaacctca
     8281 tccaatgttt tttctcctat tcctcgagta ggaaaattaa ctactctttc aaacgcagta
     8341 tcgtcatttg gattaactaa caatcgtaag taagccaaag tatctttaat ttctgccctg
     8401 tcaaagaaac ggactcctcc atatatcctg taggctatac ctgcacgtaa caaagcctct
     8461 tccaaaacac gggattgggc attcgaacga tacaacactg caatctcatc cgcactggcg
     8521 ccctgattta attccatgcc aattcgttca gtaacaaaac gtgcctcatc caattcattg
     8581 aatgcactgt atacaagaat tttttctccc tcactaccag cggtccataa ctctttgccc
     8641 atacgagtac tgttattgag aatcaatgca tttgctgcat ttaatatcat tgcggtcgac
     8701 ctgtagtttt gttcaagcct tatgatatgt gtatctttaa aatcatgaac aaactgctga
     8761 atattttcca ctttggctcc acgccaacca taaattgact gatcatcatc tcctacagcc
     8821 aataccgctg tatgatcacc agcaagcaag cggatccatg catattgaat cgtattggta
     8881 tcctgaaatt catcaactaa aatagcctgg aagcgttcgc ggtaatgagc aagtatctct
     8941 tcattatctc gtagcaattc atgagttcgt agtaatagtt cagcgaaatc gattacccct
     9001 gaggtttggc aaacgtcttc atacgcttta taaattgcaa ccaaagtctt ggccggacca
     9061 taatgcagtg cattaatatg ttgtggacgc aagccttcat cctttttact attaataaat
     9121 gcttgcgctt gtttgacttg ccattgctca ggatcaagat taagtgaaag aatgactcgc
     9181 ttgataactc gtgcctggtc ttccgaatcc agaatatgaa actgttctgg aaggttagcc
     9241 tccttgtagt ggcggcgtaa taaacgatga cataatccat gaaaagtacc aacccataaa
     9301 cccaacgtcg gtgtagacaa catactgcta agtctcgatc tcatttcacc ggccgcttta
     9361 ttcgtaaatg ttactgctaa tatagcgtgc ggggagagat gctgttcttc aattaaccag
     9421 gcaattcggc tcaccaatac ttttgtttta ccactgcctg caccagctaa aaccagcata
     9481 ttacctaatg gggaggttac agcgtcacgt tgcttttcgt ttaatccctt gagaagtgct
     9541 gctatggtca tagaatattt ccaacagaaa aagtccaagt attatcttca atttaattgc
     9601 taaagcaaag atataatcga tgcggtaaaa aatctaaaaa ttctcctgga tatatatcga
     9661 taaaacccat acaagtattg ctttctgatc aatcagagcg caaaatactg ttcgtttaaa
     9721 gtagctacta gatagtatta taatacaatg acgttatcat aaaggactaa aatgcatacc
     9781 ctctacccag caattaaacc ttacacacaa cacgaattga aggttagtaa actgcataca
     9841 ctttatttgg aagaaaccgg aaatcctgaa ggcatacctg ttattgtatt gcaccatggc
     9901 ccaggtggag aagctgaccc gcatctaaga cgtttttttg atcctcaacg atatcgcatt
     9961 attctttttg atcagcgagg ttgtggccgt tcaattccac atttggaaat aagtgaaaat
    10021 aatacccagc ttctcatgga ggatatcgac tccattagag atttcctggg cttaagggaa
    10081 tttgtgttat ttgggggtgg atggggttct ctgttagcat tattgtatgc gcaaaaattt
    10141 cctcaacagg tgaaagcatt gctactccac caaatttttt taggtcgaca aaaagacatc
    10201 gattggtttt ataagcatgg agccagtctg gtttatcctg attactggga agagtttacg
    10261 aacacagtcc ccgaaaacaa acttgataat atcccccaat attatgcgga atgtctacaa
    10321 ggctctaatg agctagcgcg aatggctgct gcgaaaaact gggctctttg gcaagccaga
    10381 tgcagtagtt tacagccaca cttatatgtt attgatcagt atagcgaccc acatttcgca
    10441 ttagcattag caactctgga atcctattac attattaatc attattttat tgaagaaaat
    10501 caggttatag ctaatgccca taaaataagg cacattccta cctatattgt tcatggccgt
    10561 tttgacttgg taagcccttt atccagcgca tgggaacttc atcaagcgat ccccgcttcc
    10621 aatctaagaa ttgtcagaga tgccggtcac tctgatagag aatcgggaat tattgatgca
    10681 cttatttatg ccagtaagga catctcaaag cagggtcttg atgcatgtta actgtattac
    10741 aaagagtaaa ggaagccagg gttgatattg atggtcaaac agttggcaaa ataaatcatg
    10801 gcttgctgat actttgtggt tttgaaccta aggattcgct agaaaatatt aaacgaatgc
    10861 tggataaatg cattaattat cgcatttttg aagacccgag tggcaaaatg aacttgagtt
    10921 taaaggatgt aaatggcggc ttgctattag taccacaatt tactctcatg gcagataccc
    10981 aaaaaggatt gcgtccaagt ttttcaaatg cagcttctcc agaactcggg cgtgagcttt
    11041 ttgataactt attaactctt gctcagaaat gccaccaaaa tactcaaagt ggttgttttg
    11101 gagcgaacat gcaagtttat ttatgcaatg atgggcctgt gacatttctg ttacaatttt
    11161 aattagtttt tactgtatta aatttttgta taacctgaat tgtcgagcaa aatacaatca
    11221 acattcatta ttggaattca ttccggccaa aaaaaagcat gtttgtttca gttaaaaagc
    11281 agcaatttaa aaggcctatt ctttacatca aagcatttgt ttgcaagaac caaaaactgg
    11341 tgtaacatca ttttaagtat ttaataaata gaataattat gcgactaatc ttaatgtttg
    11401 ctagcatcat gggatccgtt attttagcga gctgtgcaag taaaggatca aacccgatcg
    11461 atccattcga accctttaat cgtaaagtgc acaattttaa tatggcattt gatgctaccg
    11521 tattaagacc accagcaaaa ttatatcagg ctgtcgtacc aaaattggta agaaaaggtg
    11581 tgaataatgc attcaataat ctggatttgt tccctacaat agccagcgat atactgcaag
    11641 ctgaaggaaa atgggtaatc aaagacagtt ggcgactctt cattaactcc actattgggg
    11701 ttgctggtct gtttgatgta gcagaaaaat ttggtttgcc accgcattac aatgatctgg
    11761 gcctaacact cgccaaatgg ggcgataaaa aatcgcctta ccttgtaata ccctttttag
    11821 gccccagtac tcttcgtgat ggagccggct ggctgttcca gtttgcactc tggagtcctt
    11881 atgtatatat tgatgatgct ggtctggttt atggtttaat tggattacgc tatattgatt
    11941 tacgaacaca atttttcgac tctgagcctt tactgaatga agcattagac aaatacacat
    12001 tcatcagaga cgcttacctg caacatagaa attatcttat tgcagggact gagcaagata
    12061 caggcacgtc cttcgttgag gataagaaag ctaacaaaac tgcaatgcaa gaatcaaccg
    12121 cttcaaataa ccaactaggt tctgactatg ttgatgaata aaatgattaa ttgagacttg
    12181 ccaggtcatg ataagggttg gtattgagcc aaatgcaaaa ccaaccctct ttaagctctg
    12241 aacttcaaaa tcaaaataat gactgttctt tattttgata aagaagtatg taacttttca
    12301 aggcagcgca tatattcacc tgcgatatcc aaaccagttt cagtgctaat ttcccgaata
    12361 caagtgggac tagtcacatt aatctctgtt agataatcac ctatcacgtc gatacccaca
    12421 aaatacagac ctttttctct caaagctgga gctatttgtt cacatatcca tttgtctctt
    12481 tcagtaatag ctaccacttc tcccctggct cctgcggcca aatttccccg caaatctcct
    12541 tttgcaggaa tgcgagccaa agcaaaagga acgggttcgc cattgatcaa taaaatacgt
    12601 ttgtctccgc ttactgtaat atccgggata taacgctgag ccataataca ttttgtctgc
    12661 cctttggtta atacctccaa aatgaccgat aaatttttac cttctttgtc aacataaaaa
    12721 acggaattac ctcccattcc ttcaagaggt ttaaaaataa cttgttgatg aatttgccag
    12781 aactctttta attgccgagc atctctggat acaaaagtag ggggacagca atgaggaaaa
    12841 tttagggtaa aaaatttctc attcgcgtca cgtaaacttt gcggtttatt tgcaaccaac
    12901 accccttctt gttccgctaa atccaaagcg taagttgcat aaatatactc catatcaaat
    12961 ggaggatcct tacgcatcaa aataacatca aaatctctca atggcttatt acccaaatct
    13021 atggttttaa cccaactcag actctctata tctccaatgt gaatttcatg gactcgtgca
    13081 taagcgcccc catcacaaca atataagtca ttcagggtaa agtaggcgca agaccatccc
    13141 aatccttgtg cgcttttaat catagctact gtagagtctt tatagggttt tatttgatcc
    13201 aatggatcca taagcaccgc aagtttcatc attcgcctcc aattgcagca atttctcgag
    13261 ctgcagccag tgcagccaaa cgagctataa ccccataaac ataaaaacga tttgggcagt
    13321 caactacctc taaatcatca catggcatat tacaagcctg tgcgaaagct aacggctcaa
    13381 aatgcatgcc tggagcattg aggttctcat caattcctct gcctttatga acgcgataaa
    13441 atccaccaac aacaaattga ccaatcatat aaactacagg ttcagcaaca gaaccatcag
    13501 gcatcgtttc aaaagtataa acaccttcct gaataatgac tctgtctacc ttcctgcttc
    13561 ctttactggt agacatcctg gtacgctgct ttctattcaa ttgtcgaatt tcatctccat
    13621 tatgaaccat cataacgctc atgccataag taccattatc tgcctttact actgcgaacg
    13681 gtttattttc tattccgtaa gtagtgtatt tatcgtttat taacgataat atcttatcaa
    13741 cttcttgagc taaggtttca atcccttcct gggccataaa atcgaccccc tctatagcgc
    13801 taaaataggg attaattaac cacggatcaa taccgactaa ttcagcaaac tcaatagcta
    13861 cttcttcaaa aaattgaaaa tgactcgatt ttaatcgaga agcccatcct aatttggctg
    13921 taggtctaat tcgctgttgc acatcctgta atatttcagg aacgcctgaa gacaaatcgt
    13981 tattcaataa caaaaggcaa gggctgaaat tatccagtcc caccttatca ccttgtcttt
    14041 gtaatggttc aattaataaa gtttcacctt gttcgagtat tatttctgta ggttctttaa
    14101 tgtctggatc taaactgcct attcgaacta taaaaccggc ttttacaaaa attgttttta
    14161 atacattcaa actctgtaaa taatacttat tccgagtatg gctttctggg agaagcaaaa
    14221 ttttagtaca atcagggata tactctatca aggcagattg agcagcttgt atacacaggg
    14281 gaaggaactc cgggtttaaa ttattaaaac cagctggaaa taaattggta tcgacgggag
    14341 ccaatttaaa gccagcatgt cgcaaatcaa cagatgacgt tagaggtgcc ggtgtttcct
    14401 gccacttttt tctgaaccag gattctattt cagcaagttt atttaatatt attttttcca
    14461 catgatacaa aggacctgaa tgagcagtag tcagatgtgg aacggggatt tcatgcttat
    14521 tcattcatac tccctatttt ttaaaatgga tcgatgttac ctaggttatt cataaaataa
    14581 aagtatttat cattcttaat acattattac tacagttttc atgatgacaa catatataga
    14641 aaagagaggc atttatataa tagtcgtgtt tcacaacaac atattgtgaa tacagcaata
    14701 tttattccat catcgattct tcatgttctt gaccaggatt tttggcaaaa tgtactgcaa
    14761 tcatataaaa taataattca gcatttgtag ggattaaaaa actgttttat tgagcaaaat
    14821 ttaaaggcct cacaagaata tcgttatttt ctactttcaa tggcataatt atccaaaatt
    14881 atactattta tcctaccttt tatgctccat tttaaaacca tacaatcaat ccttcttcta
    14941 attgttttag gattcatctg gggatcaggc tatactcttg ccaaatttgc aatgactaat
    15001 ggagttaacc cactaggcta tgctttttgg caatcattag ggccagccct actattaact
    15061 ttagtgagct tctttacaaa acaaactcgc ttactacacc ctgtttattg gccttatttt
    15121 tttatatgtg gattgatagg tatcgctatt cctaatacca acatgtattt tattgccagc
    15181 catatcccgg caggtttatt ggcagtgtta gttaatactg ttcctttact ggtttaccct
    15241 ttagctctca tggcgggcca agaaaaaccg gatgggtggc gattttttgc cttgttactt
    15301 ggtatgtccg gcatacttgc aattatagga ataaactccg caggacttta ctcaagctgg
    15361 actatattag ctatgcttag ccctcttggc tttgcttttt gctcaattta tataggagcc
    15421 aaacagccaa aagaaattaa cgccctgcaa gctgctaatg gaatgttact ggcggcgtct
    15481 cttctgctta cccctgttgt cctcaagcag cacgcatttt attctctctc agctccgtta
    15541 actctcgtga aacaaatcgt tatccttgaa ataattttat ccagtttagg atatttactt
    15601 ttctttattc tcattcgtat ggcaggacct gttttttata gtttaactgg tggagtcgtt
    15661 gcaataaccg gattgttttg ggggtacttg gcttttgatg agaagccttc atctatacag
    15721 ggcatggcaa tagctttagt ggtttccgcc atttttctgt tatcatggag acaatcgaaa
    15781 cagactcaag gaatctgatt catgctcagt gaattagcaa aacaatttag cacacaaatc
    15841 caaacctttt tctatttaat tatgttaatt aatggtcttt tacattttat ttttgccgga
    15901 gcagtggctc gagacgcagg taatctctat aggctaggtc aaaaacctgt tttagtatcg
    15961 gcccctacct gggcatttgc gactctaatt ggaggagtca tcacagcaac tatatactgg
    16021 ctgcttcatc actccacatt aaccagaccc actatgagag aaattcgtta tgacaaagca
    16081 taagatcaaa acaatagacg ttcatgaact aaaacaccaa atggacaatc aagccaattt
    16141 gagtttgatt gatgtacgtg aactggacga atgggaaatg atgcatatcc cgggagcact
    16201 tcatattcct aaagatcgca tctctcttga aatacaaaac caaataccca ataaagaaca
    16261 aactatctat ttgcattgcc gaagcggcgt cagatcactg tatgcagctc aatgcttaat
    16321 ggatttggga tattacgaag tctattctgt ggatggtgga attatggctt gggcaatgag
    16381 tggttatccg gtaaaacagg agtcttacac cccttcctga gtgaagaggt gagagtagaa
    16441 agcttaaagg cgatgatttg caacctcatg agtatcggtg actttttctt ttcctgatgg
    16501 aacactaaaa agaccgcctt gagagctctt tggtttttgt tgcagtaaat gcaaatcgcg
    16561 agcggcgata ataatctcat gtcttaattt atgcactcta tcagataatt caagaatatc
    16621 atcaacaacg gaataatgct tgattgcgaa aggttgttta tccaaatacc cttttcttgg
    16681 gtcagaattt ttataaacat gggaacgaag gaatttttcc aaagcactgt acatatcagc
    16741 caaatcttcc cgattaggat tattatcctt attcaaatca agcgatatgg taagagattt
    16801 ataaaaatca ctgttgtcgg gagaggtgta tttataagtt gcagcaatct gatcacgaat
    16861 gtaataggcc aatgcattta atacgcgtgc cttatcttct ggctctttgg atgagttatc
    16921 cagcagttcg atagttttta gcaagacaag gacttgtggt tgcctttctc ttgaaacttc
    16981 ttttactgag tactctaatt tgtcctcaat aattttggct ttctcattat gggacttgat
    17041 taaagtaatg atactttccc tgatgcttcc ttttaatttt tcatatgcga ccaattcaaa
    17101 tgacatctta ttttctcctt atactccatg aacaggacta gtgaaatgct ttcactgtag
    17161 gccagtttaa accaattctc tcttttcgtc atgctttttc tttttactat ctaattaatt
    17221 ttcaatctat tgattttaat gaaaaatttg taatttcctt gttagttcat caaatgaata
    17281 gacttctgga gagtattttt aagccttgtt atcgtcgctt taagagtaag ctcagatcaa
    17341 ttaaatcaag atattttttg ctcaatcagt cagacacaat aaaaattaga agaaatttaa
    17401 ataagctatt tattgttttt ataaaacatt tgatttaatt tacgcgtcaa tttgcaatat
    17461 atgatggtca taaaaatgaa aaaaataagc tgcagtattc ttcttttgat caactcctta
    17521 attagctacg ctgattcaga ccaacctaaa ttaattttac aaatagttgt tgaccaatta
    17581 cgcggagatc tgatttaccg tcatcataaa cagtttggac cttctggttt caattatttg
    17641 cttgctcatg gtttggatta tcataacgca catcatcctc atgccaatac aacgacctgc
    17701 gcaggccata gcactattgc aacaggaagc tacccctctt tacacggcat agttgataat
    17761 gattggtatg atagaaaaac aagaaaacta aagtactgta tggaggattt acaagccaaa
    17821 attttaccca ctgtacacac ccatatagaa atttcaggac gctcaccgcg aaacctaaaa
    17881 ccatccacat taagcgatga aatcatttta gcaaataaag ggaaagcctt tggtgtatca
    17941 ttaaaagaca gggcagccat cactctagct ggtcacgcag gaaaagcgtt ttggtttgac
    18001 aaaacgaatg gtggatttat tacaagcact tactactatt ccagttatcc actatgggta
    18061 gaaaactgga ataaacacta tcaacccaaa gcctacgact ggaatctttc tcatcctaaa
    18121 tcattctatc agaatgcaaa tactcttcca tttcgtcata actatggcag ctttggtcaa
    18181 acatttcccc atcatgtaac caatcctcca tctgaagaat atttcaaatc gctttccaga
    18241 acaccaaagg cagatgaatt aacagctgat tttgccaaac aactactggt taatgaaaaa
    18301 ttgggaaaaa caacaggcca aacagattat cttgcaatca gtttttctgc tgtagatgct
    18361 attggtcacc aatttgggcc taatagtctg gaagcagaag acaatttgat cgcccttgat
    18421 gacaccctaa gccaactttt taaaaccatt gataaagagg ttggtcttaa taatacctta
    18481 ataatactca ccgcagatca tggtgtcagc gatggtccat cttaccttaa agcacataaa
    18541 atacctgaaa ttaaacctgt taatatagaa gcaacaggaa aacacatcga gaatttatta
    18601 ttgaaacgtt tcaacctgcc tgcgcaagct ttaatgtcaa ttaatcctcc ttttatatac
    18661 cttgatcacc aaattataaa agagaaaaat ttggatattg cagaggtcag tttctacctg
    18721 gcagaagaaa tcagtcatct tccagggata ttcaaagcct accccttacc tattcgtgat
    18781 attgaaaagg attggttaag cgcaaaagtt gaccggatgt cttacgctta ccgcgcaggc
    18841 gatgtttaca ttgttcaacc gccatatcaa agccacggtg caaaaagtga agatcgagtt
    18901 gctcatggca gtccctggca atatgatact tatgtcccgc tactgtttgt acaccctgac
    18961 ttcaaaccaa aacgtatatt caggcaagta cacacaacgg atattgcacc aacattatct
    19021 tccttattat tgattaaacc ccctgccgca gcagtaggac agcctttagt tgaagtagtc
    19081 aatgcttttc ataagactgg agagaatgat tgaattccaa ctgaaaaaac tttactattc
    19141 gtacaaaatt tttaatgaaa acattatgac aaagcaagca attattattg ggatttccgg
    19201 cccatcagca tctggaaaaa gtttattagc aaatactata gtcaatgaat taggatccga
    19261 gcaggttgtc gttatctctg aagatgccta ctataaagat aatgggcatc taccctttac
    19321 agagagagaa aaaataaatt acgatcatcc tgactccttt gatcatgctc tactttatga
    19381 gcatcttcgt cagctacgag ttggaaatac agtacaaatt cctatttatt ctcattccaa
    19441 acatctgcgt ttacctgaaa ccagagcagt gggtcaacat gccattattg tactcgaagg
    19501 aatactgctt ttcagtgata aagctctacg agaaattatg gatatacgta tattcatgtc
    19561 gactcctctt gacgtctgtt taacgcggcg cttaaaaaga gatgtagtag aaaggcatcg
    19621 atcatttgaa tcggttattc atcaatatga gactacagtt cgccctatgt acatgcaatt
    19681 tattgagcct tcaagccgct acgctgatat aatagtacct cgcggcggtg aaaacagaat
    19741 cgctatagag atgattcaag ctaaaatgcg ggaattatta gcttcacata ctcgaggcag
    19801 ttgatgtttt attaggctgt ttaagagcaa cctaattgat attgtggttt tagtccagga
    19861 tcgaagtaac actcacttcg ccctgctaaa ttaagaataa tgggaggaga tactattgtg
    19921 ggatttttaa ctggaaaaaa agcacttatt gttggattgg caagcaacag atcgattgca
    19981 tatggcattg ctaaagcatt ccataatcaa ggcgctgagt tggcttttac ttaccaaaac
    20041 gaaaaattac agtcacgtgt tgaaacaatg gcatcggaat ttaattcaac tctagttttt
    20101 ccttgtgatg ttgcaagtga tgaagaaata aaagccgtgt ttgataattt gcgtaatcac
    20161 tgggataaat tagatatcct ggtccactct gtagcttatg ctcctgctga tcagatcagt
    20221 ggtgattttg tagaatgtgc aaatagagaa ggatttagaa tagctcatga tattagtgcc
    20281 tatagcctca taggtttgtc tcaagccgca ttgcctatga tgctagatac tcagggttca
    20341 attttaacct taagctatta tggggcagaa aaagccgtac caaactataa cgttatgggt
    20401 gttgcgaagg caagcttgga agcctctgtg cgctatctgg cagccagctt aggatccaga
    20461 ggattaagaa ttaatgccat atcagctgga ccaattaaaa ctcttgccgc tgctggaatt
    20521 aaagattttc gtaaaattca tgctgcctat gcaaacatta ctccattaca aagaaatgtt
    20581 actgctgatg aagtcggaaa tactgctgcc ttcttatgct ctgatctggc atccgggatt
    20641 actggtgaag tgctacatgt tgatgcagga tatcacgcag tatcagcgat gagcgaacta
    20701 ggttagatat atattagtcc gctttaaatt gctgacttaa ttcttagttg tacttaaaaa
    20761 aattcaataa agctaaatta tattggggct gagcaaatag cgaggcccag actactaaac
    20821 gttttttata atataacaga caaatttaga tttagcctat ctaatctatt gaatcgacat
    20881 gaaatagagc acctcaatca aatgactcct gcgactcctt cattaacgga ttattattaa
    20941 gagaataaac ctcaacttaa aaagaccata tttagctgat tttgaatgaa aataatcctt
    21001 caaaagctca tataaccacc tgcgctctat tcaggatcat tttcgtccag cctgaacccc
    21061 aaaccaaccg ctataaaata tttcaacgcg taagtctatg aacagcttca ggcttattaa
    21121 tgtgatattt atatcaggag caactttgaa aaagcctcac agagaaaaac tataggcaaa
    21181 aactgaagaa ttctcgatat ctggccatcc cttaatttcg taaggaacag ccattttctt
    21241 atcctatttc ctttctattt tcgcatgatg aagcaagtta ttaacatata aatcataatc
    21301 catcattcca tagctagctt ctatttgctg tatcaagcta tctctttgct cttgatccag
    21361 agagcttaat tttccatcat taattcgttt taatttaaca acaacataat cgccgttgtc
    21421 taaaattact ccgtctcggc tttctggacg taataaatta aatgctaaat cattaattaa
    21481 agaatttgct ttatcactat ccctggaagc attctctaca gaatgccatt cgaattgatt
    21541 gttagcgatt aattcctgct gttgcttatc ttcaacgggg tgaagcaaac tactaccaat
    21601 ttcttttgct ttagcatccc catactgttt tgcaagtatt tttttaatct gatctcgcac
    21661 ttcatccaag gtttgttctc ttgaaggtat atgtttcttc actcgtaaaa ctattacaga
    21721 gtcattatca atctgtatag gctcgctatt attccctagt tctaaaacat cagtactgaa
    21781 tgctgcatgg ataacctgct tatttttggt aataggttgc ttgccaccat cacgagaaaa
    21841 aggctctgta tgttgaattt tcagctttaa tgaatccaaa accggatcaa gtgaatcagg
    21901 agtttgataa cttaaatctg ttaattgctc taaaacttga gcgtattttg cctgagccat
    21961 atcactggtt agttgatcca ttataatgtt ttcaacttct tgcaaagatt tagttgtaac
    22021 tggcttgtaa gcaatcagct taaaaatttc ataaccatat tttgtttgta ctggtataga
    22081 aatttgccct ggtctagtta aattggaaag tactctgtca tattcatttt gcccgccagt
    22141 aatccaggga agaataccct tattggctat agataacttg tcatcagatt tggaagcaac
    22201 atatttatca aattgttctg gatgcttttt taaatcgcta taaacctcat cggctttttg
    22261 cttaattgaa tcttgttctt ccttggtggc attttctgga actgcaaata aaatatgggc
    22321 aacccgccat tgagcaggag ttaggtagtt acttttgttt tcttcataat agcttttaat
    22381 ttcgtcgggt gatatcttta tttgtgactt gatatcatgc atagacaaaa gcacataatc
    22441 caatgtaact tgctctaaag tcataaattt tttatggtgt tggttataat aactcttgat
    22501 atcatcttct gaaatcttcg cctgttgttc aaagcgatca gaaggtaccg tcaaataatc
    22561 ataatccctg gtctgcatgt acaatctgac aaaacgcttt atttcatctg ataaagcaaa
    22621 tgatgttccc ataaacgcaa aacgttgttg attaagcaac atgccttgcc ttacttcatt
    22681 ctggaaagtc tctggagtaa acaacgctcc actcaaagct tgttgatatc gttgtgccga
    22741 aaaatgtcca tcctcctgga attgaggaat ttgcactatg gctgcattgg cttgttctgg
    22801 gctaacctca aatccatatt tcctggcagc ctgaatactc acctcattcg ttatcatttg
    22861 atttaatact tgattttgca gatttttttc atcagcggca gtcatctgtg gtaaatcttg
    22921 ctgggcacga gtacgtctgt agttcgtttc aaacgcttgc atggtaattg gtctatcatt
    22981 aactattacc tttgcatcgg atatttgtcg agattgaaaa taataatcaa caccaaaaag
    23041 tgtaaaggta atagcaatta atataataac taaccacgct actacaccct gaatgtgttc
    23101 atttaacttc tgcaacatgt cccgagatcc attttgatat taacaatgct tgatgaaacc
    23161 gattctacca taagctgata aaaaaaacgc gcctttcagc gcgtttatct ggcggagtgg
    23221 acggggctcg aacccgcgac ccccggcgtg acaggccggt attctgacca actgaactac
    23281 cactccattt cttggtgggt gctgtaggga tcgaacctac gaccctcgcc ttgtaagggc
    23341 gatgctctcc cagctgagct aagcaccctg aaaacttaag cttgttgtac cgcttctttc
    23401 aggtttttac ctgctttaaa tttggcaacc cgtgacgctt taatttggat tgtttttcca
    23461 gtctgtgggt ttctgccagt acgtgctgaa cgattacctg ttgaaaaaga accaaaacca
    23521 ggtattacaa cttgatcgcc tttctttaag acatcagtta cagtagccat aaaagtttca
    23581 agaactctgc ttgcgtcagc tttggtcaaa cctgaaccgc ttgctatagc atcaactaat
    23641 tcactcttat tcatcttttc ccctttacag ttaatcatcc atattccgga gctgatttaa
    23701 acagattcaa ctgctccagt caagttcgta catccttgca gagcccgcca gtagcgggcc
    23761 acgaagagaa atatactctg tattaatgtg cgtgtaaatc attattttta attttttttg
    23821 atcttttatt caatatagtg ccaggttgta tatttgttgg ctcctccacc catggattgc
    23881 gttgcaaagc cagttccaaa acctgttcaa tggtgttaac aggatgaatt gtcagcttgc
    23941 ggagcacatt atcagggatt tcctcaaggt cttttacatt ctcctcgggg ataatgacat
    24001 gcttgattcc accacgatgt gcagccagca atttttcttt taatcctcca attggtaaaa
    24061 cttgcccacg cagagtaatt tcacctgtca tggcgacatc tgccttaact gggatttgtg
    24121 ttactatgga gactagtacc gtgcacattc ctataccagc gcttgggcca tctttgggtg
    24181 ttgcaccttc tggtacatga acatgaaaat catgtttctc ataaaaatca tctggcaaac
    24241 caaaagcttt agcgcggctt cttactaccg tcatagctgc atggatagat tcttgcatta
    24301 cctcaccgag ctgaccagta tgagtaactt tacccttacc tggcataatg gatgcttcta
    24361 tagtcagaag ttcacctcca acacttgtcc aggctaagcc agtgacttga cctatctgat
    24421 cgtattgttc agctaatcca taacgatatt ttttaacgcc caaatactta gtaatgttgc
    24481 taacagttat actgattgtt tttccttttt ttcccttttt gcttgagagt atttctttaa
    24541 caacttttct gcatatactc gctatatccc tttcaagatt acgtactcca gcctctcgag
    24601 tataataacg gatgatatct ctaatagccc cttcgctaat atggatttct tcattggtta
    24661 aaccatttaa cagcatttgt ttgggaacca aatatttttc agcaatactg actttttcgt
    24721 cctcagtata tccaggcaag cgaataactt ccattctatc caataacggg gccggaattt
    24781 ctagcgaatt ggcagttgca ataaacataa catcactcaa gtcataatca acttccaagt
    24841 aatgatcact aaatgtatgg ttctgttcag gatccaatac ttccagtaat gccgatgccg
    24901 gatcaccgcg aaaatccatt gccatcttat ctacttcatc cagcatgata agaggatttt
    24961 taactcctgc cttgcataat ttttggataa ttttacctgg catggaacct atatatgttc
    25021 ttcgatgacc acgaatttct gcttcatctc ttaccccgcc cagagcgatg cgtatgaaag
    25081 ttcttccagt agcattggcg atagattgtc caagagaagt tttacctact cccggaggac
    25141 ctactagaca caatatcggt cctttcaatc tttttactcg ttgttgtaca gcaagatatt
    25201 cgatgatacg ttctttaacc tgctccagac catgatgctc cttatcgagc agcttttctg
    25261 cttttagtaa atcaaactga attttggtcc gcttcttcca tgggaccatc agcatccaat
    25321 caagataatt acgaataaca gttgcttcag cagacatcgg agacatcatt tttaatttat
    25381 gtaactctgc taatgatttc tctttagctt ctttcggcat tccagccttt ttgattgaat
    25441 tttccaattg ttcaatctca ttgccttcct cacccatttc ccctaattct ttctgaatag
    25501 ctttgatttg ttcgtttaga tagtattctc tctggctttt ttccatttga cgtttgactc
    25561 gacctcttac acgtttttcc acatgtaaca gatcaatttc attttctatc gccgccatta
    25621 atttctcaag tcgagttcct acatccatag tttcaagcaa ctcttgctta tcatctactt
    25681 taagcgttaa atgtgcggca atggtatctg ccaggcgacc tggctcttct attcctgcca
    25741 atggtgacaa gacttctggt ggaattttct tattaagctt tatatattgt tcaaattgcg
    25801 acatcaagga ccgcattaga attccaattt cttgctcttg aattgttgag ccaacttcct
    25861 caatgtattc aagtgtcgct tcgaggtaac ctttatcctg agtatactcc ttgacacgtg
    25921 cacgctgctc accttcaaca agaactttta cagttccgtc aggtaacttt aacaattgca
    25981 aaacactgga tacagttccc acttgataga tatcttctgg accaggatca tcatgcgccg
    26041 atttacgctg agcaactaaa aaaatttgtt tattatcaat catcgctgct tcaagagctt
    26101 taattgactt gccacgccca acaaagagag gtatcaccat atgcggatag acgactacgt
    26161 ccctcaatgg taatacaggc aaagcagaag atttcacagt ctcatttgat attatttcat
    26221 tttcattaga cataatgacc cttattcttc aaaggaaaat ttcttggtta tagtttctta
    26281 atactattac ttacgagtat acagatattg gtgctggtga acaattcgta atgtgagagt
    26341 tagtctattg ctattaagat ggctaaattt gttattttaa gctacaaaat cagctttaaa
    26401 tatattttgt gaatgaaaga taaaataact tctgcaacaa tttaaattat tgcagaagtc
    26461 aacatcttac ttaatcttta ctaccagacg cacttttttt ctcatcctgt tcataaatga
    26521 gaatcggttt agatagtcca ttcactacac tctcatcaat aacaacctta ttcacgcctt
    26581 ccaaggaagg taagtcatac atagtgtcta aaagaatatt ttcaagtatt gatcgcaaac
    26641 ctcttgcgcc catttttctt tcgagggcct ttttagcaat agcaatcaaa gcttcgcctc
    26701 taaactcaag ttcagaacct tccattttga aaagtgattg aaattgcttt gttaaagcat
    26761 tcttaggtct cgttaatata tcaatcaatg ccgcttcatc aagttcctgt aaagtggtta
    26821 caacaggcaa acgtccaaca aactcgggaa tcaacccata tttaattaaa tcatctgatt
    26881 ccaattgacc taaaactttt gaaacttcat cattactgct ttttttgctt tttaattgag
    26941 cagaaaaacc tatgcttgat ttatcgctgc gttcacgtat tactttgtcc aaacctgcaa
    27001 aagcgccacc acagataaat aaaatatttg atgtatctac ctgcaaaaat tcctgctgtg
    27061 gatgctttcg cccaccttgc ggtggaacag atgcaacagt accttcaatt aatttcagta
    27121 aagcttgttg aacaccttct cctgaaacat ctctggtgat agatggatta tctgatttgc
    27181 gtgaaatctt atcgatttcg tcgatataga caataccttg ctgtgcctta tctacatcat
    27241 agtcgcactt ctgtaataac ttctggataa tattttcaac gtcttcgcca acatatccag
    27301 cttcagtaag ggtcgtggca tcagccatgg caaaaggaac attaagaatc cgcgccaggg
    27361 tttgagctaa aagagtctta ccactgccag taggtcctat aagtaaaata ttacttttgc
    27421 cgagctcaac accatcctcg cttttatgct gtaatctctt atagtgatta tatactgcta
    27481 ctgataaaac ctttttggca tgttgttgcc ctattacgta ttcatcgaga aagttagata
    27541 tttcttttgg tgtcggtaga cgtgcctcag tttcttcatg agtttcatgc gtctcttctc
    27601 gaataatatc attacaaagc tctacacatt catcacaaac aaacacagaa ggtccagcaa
    27661 ttaatttttt tacctcatgt tgactcttgc cacaaaaaga gcaatataag accttatctc
    27721 catttccgtt accggattta ctcataacca aaccccttct tacagctatt actaattaat
    27781 agtaattaca tgtaaaattt tagacaatca gataatattg cgccaccaca ttactatcaa
    27841 accaacttat attatactca gataaactag gagtatctag caaagttata agtctgtaga
    27901 atgtccagca acttgtctgt catagagaac tttatcgatt agaccatact ccatagcctg
    27961 agtagcactc ataaagttat ctctttctgt atcacgcatg atttgatcag gtgttttttt
    28021 agtgtgttta gccataatat tattcaaacg ttccctaact gccaaggtct ctcgagcatg
    28081 aatttctatg tctgttgctt gacctctata gccacccaag ggctgatgta tcataactct
    28141 tgagttaggt aagcagaatc gtttgccttc agcaccggca caaagtagca aggcagctgc
    28201 acttgctgcc tggcctatgc ataatgtact tacatctggc ttaataaatt gcatggtgtc
    28261 gtagatagca agacctgcag taacgactcc gccgggagaa ttaatatata gagatatatc
    28321 tttctctgga ttttcagact ccagaaacaa caactgagcc acaaccaggt tagccatatg
    28381 atcttctact tcacccaaga gaaaaataat tctttctttt aataatcttg agtaaatgtc
    28441 ataggaacgc tcacctcgcg aggtttgctc aatgaccatt ggtattaatc cgcttgcatt
    28501 acggataata ttatctgaat agcctggcat gcttactctc cttttttctc agtgcccttt
    28561 ttgggattca tcactgaatc ataatccata tttttgtatt taagtttcgc atcttctgct
    28621 attttatcag caaccatatc ttccataact aatgcttcaa cttcagccat atgctctttg
    28681 ctgctttgat accacgcgcg aagctcatca ggactttcgt aagcactggc aaatttatca
    28741 atcatagcat taactttgtc gttgtctgca acaatttcgt gtttttttac atactcggca
    28801 aaaagtaagc ccaagtgtac gcgtcgcttg gcttgctctt caaataactc ccttgggaaa
    28861 tcaggaattt tttcatcgtc tttatgttcg tgaccaaaca atcggtgata catatcatgc
    28921 tttaaatgct caatttcttt atctatcaaa gctattggca actcaacatg attcacagac
    28981 attaatgaat caaacagttt ctctctgttc atcatgttga cccgacgttc taattcacga
    29041 gccatatttt ctctaatatc ctttttaaga gactctatac caccttcttt tatattaaat
    29101 ttctctgcaa atgcctcgtc caaagcaggc aacttgcctt ccataatctt tttgatagtg
    29161 atcttgaacg ttgcttcctt cccagccaaa tctttatggc cataatcttc cgggaaactc
    29221 actttgatat cgaacggttt gtcaattttc ccaccaacaa tcccatcttc aaatccggga
    29281 atcatcgaac cagaaccaat tacaagctca tatccttcag cactgccgcc ctggaatggc
    29341 ttatcatcca aaaatccctg aaaatcaata acaactttat cacctttttt gaccgcatga
    29401 gttacttcat gccactcttt gttttgttct cgtaattttt caatcatgtt gtcaacatct
    29461 ttatcagtga cttcagatcg aattaattcc actggagctt gattgagctc gacaatttca
    29521 aaaacgggca taacttcaaa tacagcagtg tatttaaaat ccttacctgg ttcgatttct
    29581 aaaggctcaa catgaggata acctgctgga accaattcat ttttttgtaa ggcttcatat
    29641 aaggtagatt ggaccatttc ccgggcaact tcttcacgca cactatcaga gaaacggctt
    29701 tttacaacat taaaagggac tttgcctgga cgaaaaccat ctattttcac tttgcgagca
    29761 agatttctga gacgcgagct cacctcttcc tcaactttct ctgtaggtac agaaactgta
    29821 accttacgct ccaaaccttc tagggtctca acagaaactt gcattaattc acctctcgga
    29881 agttatcatg aaatggtgcg aaaggagaga ctcgaactct cacgggtcgc cccgctggaa
    29941 cctaaatcca gtgcgtctac caattccgcc actttcgcaa tcaggttgga ttatcaatca
    30001 gtaattcagt cttgtaaaga ctcagatgga atctttagcg gtagactcaa aaaaatattt
    30061 gttacaaatg gggtgaacga tgggactcga acccacgaca accgggatca caacccgggg
    30121 ctctaccaac tgagctacgc tcaccaaaaa cactcttaaa cagggcttac gaaacttccc
    30181 aaattacaaa ttcataattt tctatatagt tatttacaca aaatagattt tcattaaaga
    30241 attacgtaac tatagatggt ttcgtaagcc ctgttccagc tataatactg caaaagcaag
    30301 gcggctggcg cgcccggcag gattcgaacc tgctaccctc ggcttagaag gccgatgctc
    30361 tatccagatg agctacgggc gcttaaatgg tcggggagga gggatttgaa cccccgacat
    30421 cctgctccca aagcaggcgc gctaccagac tgcgctacac cccgataccc gtcccaagga
    30481 cagagcgcag ataatactag gtgctatcac gaaggtcaat atcctttagc atataatttt
    30541 tatttattga tatagtctga atttcttcag tacttttcgt caatttattg ccctttacaa
    30601 gcgcttacgt agttgcctca gcactattat caacaataac tcgtgtactc tataactatg
    30661 cactttcacc ctcatgactt aaatcagcaa ttaggttagg ataatgaatt atcagcagat
    30721 aagttatgat catgaaaaca aaactattac ccttgtttga taatctcaat cacatccata
    30781 aaaaccatga aaatgtaata ttgcctgatg cccgatttca caatgatttc acttattgct
    30841 taagcttttt aaaaagctac atagggagcg aaggtacttt caacagttac agaagagaaa
    30901 cagaacgttt gttacagtgg tcatggcttg tcaaaaactc tactattgat tctttaaggc
    30961 gcgacgatat tgaacaatac atccatttct gtcaaaaccc gcctaaaaca tggattagtc
    31021 ttaaaaaagt tccacgattt atagaaaaaa atggtaaccg gatacctaat gaagagtggc
    31081 gaccttttgt agtgacacta agtaaggttt ccaggaaaaa tgggcatctt gcatcaatag
    31141 atcaattcaa gttatctcag ggagccgtgc aagaaatatt cgccatctta agtactctat
    31201 tcaactttct aattgctgaa gaatatctga tatccaatcc agttgccctt attaggcaaa
    31261 aaagcaaatt tattcgcaaa agacagcata acgcgcctgt tagacgatta agtctggttc
    31321 aatgggaggc tgtcctgaga gcagctgaaa gtttggctga agattcccct gaaaaacatg
    31381 aacgcactcg ttttatttta agtctgttat ttggcatgta tcttcgtata tcagaacttg
    31441 ctgccagtga gagatgggta cccagtatga atgattttgc caaggacagt aatggccact
    31501 ggtggtttac taccgtaggg aaaggaaata aggaacgaca aattgcggta agcgacgcta
    31561 tgctggaaag tcttacccgt tggcgattat ttcttggact tacccctctt ccatcaccag
    31621 ctgataattc gcctttacta cctaagctgc gtggtcatgg tccaatgagt gatacagctc
    31681 ctataaggcg aattgttcag cattgttttg acttggcaga agaacaactg cgacttaatg
    31741 gtttatcaga ggaagcggat aatctatccg ctgccacggt gcattggctg cggcatactg
    31801 gtatatcaga agatgtaaaa atcaggccca gagagcatgt gcgagatgat gccgggcaca
    31861 gttcaagtgc tacaacggac aggtatattg atatagaaaa gcaagcacgt tatcaatcgg
    31921 cacgaaagaa aataattcag cccagcgaat aatttatttt taaagaaaat ctggttttaa
    31981 acttatgcaa atatccagct cgcttacatg atcaatagga agcttaagct aatttatgat
    32041 aaaatgactg attagttcaa gcttacggta taacatgctt acattgcgtc aaattacttt
    32101 atccagagga gataaaattt tactcgataa ggtcaatgtc agtctttatg aaaaacaaaa
    32161 aattggcctt atcggtcata atggatgtgg aaaatcaaca ttatttgatt ttcttttagg
    32221 tcaattatct cctgatactg gagaatatct aattaatcca caactcagca tcagtcattt
    32281 gtctcaacac atacctgata gcaatgaaaa agctttggat tttgttcttg ccggagatca
    32341 acaatacatt aaattgctaa agcgcctttc agaagctgaa aaaaacggcg atgatgcaga
    32401 ggttttgcaa tgtcacgagg aactctctca tactggtggt tacagtaagc ccgcgcaagc
    32461 agcagttatt atgtctggct taggatttag tggaaatcaa cagcaagagc ccgttaacag
    32521 cttttctggt ggctggagaa tgcgcttaaa tcttgctcgg tgcttaatga aacccgccga
    32581 tttactcctg cttgatgaac ccacaaacca tttagacatg gaagccatct tctggctgga
    32641 acgctattta aaacaaagtc caagtactat tattcttatt tcacatgata gagaatttct
    32701 tgatgccttt gttactcata tattacatat agaaaatcgt aatctgacac tttattcagg
    32761 aaactatagc agctttgaaa aaactcatgc gcaacaactg gctctgcaac aagcaatgca
    32821 tgaaaagcaa caaaccaaaa tcaaacatat gatgactttt gtaactcgtt ttaaagcgaa
    32881 agcagccaag gccaaacaag cgcaaagtcg aatgaaagct atagaaaaga tggaaataat
    32941 tgcagcagcc caagccgact cccctttttc ttttgatttt ttcccttgtc ctcgggcagg
    33001 aaatccttta attcaatgca atcaagttga tgcaggatat atcaatcatc ctccgatttt
    33061 gaaaaaaatc aaactctctc ttaatcccgg cgatagaatt gcgctactgg gacctaacgg
    33121 tgaaggaaaa tcaaccttaa ttaaaacgct tacagcagat ttgcccgtat taagtggaga
    33181 tattcatcgt tctccacact tacaaatagg ctactacgct cagcatcaac ttgagcaatt
    33241 aaactgtaaa ttaagtccgg tagaaacact gcaaactctc tcgccagagg taagagaaca
    33301 aaccatacgg gattttttag gtgggtttaa tttcagaggg gacatggcgg tacaatccat
    33361 tcagcacttt tcaggtggtg aaaaagcccg cctggcatta gcaagactgg tttggctaaa
    33421 acccaatctt cttttgctgg atgagccaac aaaccatttg gatcttggaa tgcgctcagc
    33481 aattgaatta gcgctgcaaa cttatgaggg tgccttaatt ttgatttcgc atgaccgcca
    33541 tttgttaaaa tcaagtgtgg acaactttta tcttatttat caaggaaaag tacaaccatt
    33601 tgaaggggat cttgatgatt actatctctg gctgcaaacc agaaattcag aaaaggaatc
    33661 caaattagct acttccccaa atgaatataa agaaagaaaa agctatcaaa acaaattaaa
    33721 aaagctggag caactcattg agcactatca gaatcaattg cgccttcttg ataagcagtt
    33781 agctgacgtt tctctgtatg aagacacaaa gcagaaaagc aaattggata atcttttgat
    33841 ggaacgagat atcgctcatt cttctttaat gaagacagaa gaagagtggt tagaaatatg
    33901 taatgctctg gaaaacctgg agtaagtaat aggttctgct aatcaatacc atttaacctt
    33961 gtaactgttc caacatggct tttgctgcca actgctcagc ttttcttcta ttaggccctg
    34021 tgccataagc tacctgactt actccctcaa ttgtgcatgt tacatggaag atttgagcgt
    34081 gctcatcccc ctcaatcttg gttaggacgt attcaggtaa agcgaatttt gatgcttgca
    34141 aaaactcctg taattgtgtc tttgcatcct ttaaacaatg atttaaatcc ggatcatcca
    34201 atcgtgaact ataaagcatt aaaataatct gttttgcagc aatcattcct ccatccaaat
    34261 aaatggctgc caatatagcc tcaagggcat ctgctaatat agatgtgcgg cgaaatccac
    34321 cgctccttaa ctcaccttgc ccaagaaata gataatcacc caaatctatt tctctggcta
    34381 tttctgctaa catttcacct ttaacaagaa aagaacgcaa tcgacttaat tgcccttcac
    34441 tgtgaagtgg aaaacgattg aatagctcat tggcaataac aaaacttagt atcgaatctc
    34501 caagaaactc aaagcgttca taattatcgc taccagcact gcaatgcgtc aaagcctgct
    34561 tcaaataggc tatgttatta aaatgatagt ttaaacgtct gcacaatctt tctaaattaa
    34621 ttttcactac ctgttattac ctcaaaatta tcttcaaaat taaataataa gctcatatta
    34681 taaattagag gtttgatgac ttgatatttt aacttaattt taaatttatt ggggcctgaa
    34741 ggagtaataa ccagctctcc tggttttaag tcctctaccc cattgatatc taatcgttta
    34801 gtcacacttt cccttaaagt tgtaacatcg gtcaagggat cccccgacaa agaagaaaca
    34861 ggtgttgaat ttaatgcttt gattgaatgc aaaatcgaat aatgttgaat ataaactggc
    34921 actgcccgca taacaagtat accaaccatt atcaccacaa cagcagtaaa cagcatacca
    34981 atcaatgtca ttccctgttg ttttctcatg ccctattccc tcaatgaatt aatctgccta
    35041 tccttgacca gcgtacatta tctgttttgc cattccaact catccagacc agaaatgctt
    35101 ttcctcttaa atagctatca ggtacaaacc cccagaaccg actatcggcg ctatcatccc
    35161 gattatctcc catcataaag taattcccct caggaacaac tatatcaaaa tctacggctg
    35221 gcgcatcagg tctgacaaat atgtcgtgca ccacaccgtt taaatcttct ttatactttg
    35281 tcacagcctt gccagagctt tcatcagtag tatactcaac aaaggtctgt ttcacctctt
    35341 tgccattaat agttagtttt ttatcatgat atgaaatttt atccccaggc actccaataa
    35401 ctcttttaat atagtcataa gatggttcag gtggccagcg aaatactgca atttctcccg
    35461 ttttgggatt agcaattggc actatttttt tctcccatac aggaagtctc agtccataag
    35521 aaaatttatt aaccgctaca aaatcaccaa ccaacaaagt aggctcgagt gagcccgatg
    35581 gaatacgaaa aggttcaact aaaaaagagc gcaatagcag aacaataaaa aatacaggaa
    35641 aaaaagaacg tgaatactca atcattcgac ctggcttttg ttcaggcaaa cgctttttag
    35701 accaaatcaa ccaatccaat aaagcaatca atcctgttac agcggataat atgaccaata
    35761 ttaaagcaaa attcataaat tcaatatcct caattttaag caaaagacaa tttaatcatg
    35821 atttgactta tgtccagatg ctgacaaaaa ggtcaacaca tccttattag taaatgagcg
    35881 gctctacttt tttttatctg tttgaaacac ggccataaat gcttcttgag gtatttctac
    35941 atgccccacc tgtttcattc ttttcttgcc agctttttgt ttttccagta atttccgttt
    36001 acgcgtcaca tcaccaccat aacactttgc tgtaacgttt ttgcgcaatg ctttcactgt
    36061 ttgcctagca ataatatggc ttcctatagc agcctgaata gccacatcaa acatctgtct
    36121 tggaataagc tgttgcatct tctccgcaat caattttccg cggctatgag cggagtctct
    36181 atgaacaatc acagcaagag catcaacacg ttcgctattt attaatatat ccatcttgac
    36241 taaatcagca atctggaatc tttggaagtt ataatccaaa gaggcataac ctcgactaac
    36301 tgattttaat ctatcaaaga aatcagagac tacttcgctc attgggatat cataaacaac
    36361 tgaaacatga cgaccactat aggtcatact gacttgaaca ccacgtcttt caacacataa
    36421 ggtaatgata ggccccaaat aatcttgtgg cactagaata tttgctctga caattggctc
    36481 atacatctct tttatttgcg gggttggggg caaatgagaa ggattatcaa ttaataaagt
    36541 ttcccccttc tgagttacaa tctgataaac aacagtaggc gccgtagaaa tcaaatcaag
    36601 gttatattct ctttccaatc tctcctgaat gatttccata tgcagcatgc ctaaaaatcc
    36661 gcaacgaaaa ccaaatccca aagcctctga agattccggc tcataaaata aagaagcatc
    36721 atttaaactc aatttagcca aagcctctct aaatgcctca aaatcatccg agctgaccgg
    36781 aaacaaacca gcataaactt ggggcttaac gcgttgaaac cctggaagaa ctttatcagc
    36841 tggatttcta tccagagtta aagtatcacc aactggagcg ccctgaattt cctttatacc
    36901 agcaacaaca taacccactt caccagcata taaagcatcc agtttagtcc gtttgggggt
    36961 aaaaatacca acttgatcca cttcataagc tctgcctgtg gacatcactc gcattttatc
    37021 accttttcgt atggcaccat taacaatacg aaccagtgag acaactccta aatagctatc
    37081 aaaccaggag tcaataataa gtgcttgtaa tggggcatga acatcgcctt tcggaggggg
    37141 aatattcgca accaatgcct ctaaaacatc attaacaccc aagccacttt tagcacttac
    37201 tctaatcgca tcttgagcat ctagaccaat gatatcttcg atctcggaaa taacccgctc
    37261 aggttctgcc tgcggcaaat caattttatt cagtactggc aatacggtaa gagactgatc
    37321 aattgctgta taacaaactg ctaaagtttg tgcttctact ccctgtgctg catcaacaac
    37381 cagaatagcg ccttcacaag cggcaagaga acgagatacc tcgtaactaa aatcaacatg
    37441 ccctggggta tcgataaaat tcaataaata ggtctttcca tctttagctg tgtaattcaa
    37501 ggaaacgcat tgcgctttga tggtaatacc tcgctcacgt tcaatatcca tagaatcaag
    37561 aacttgcgag ctcatttcgc gctcagtcaa cccgccacaa atttggataa atcgatcagc
    37621 caacgtagac ttgccatgat caatatgggc aattattgaa aaatttcgaa ttcggtttaa
    37681 atctttcaac tgttctaacc ttcttgcaaa tagcataagt ctatcttaaa tgttcgcatg
    37741 cagaaagtag gcaaagcaaa ttcagtcgtt tttatattct taagagaatg aaaattgctt
    37801 attcatttac caatttcatg cactgtattt aagataaaca aaagtcaaaa gtttgctatg
    37861 aggctttatt tttactaaaa ttcgtgcttt gcaacgatac agggtacatg atgcgacaaa
    37921 tcatctggct aggtttcatt tcactcttcc ttttatcttt cactacctat tccgacacaa
    37981 cttttacaaa acgtaaagac gtacaatcgt ttattaacat gatggtaacg aattatcact
    38041 ttaatcgtaa tcagttaact acagtaatga accaagttaa acttcaacca caagtcatcg
    38101 aatctatgga aaagccctat gaaaagaaaa actgggatgt ctaccgagaa ctgtttctta
    38161 ctcagaaaag attaaaaagc ggattgcaat tttgggctga aaatcaaaaa acattggaaa
    38221 aaattcagag aagatatggg gtgtctccgg agatcattat agctatttta ggagtagaga
    38281 caatgtatgg tgagcgtcag ggtgaataca gagtcttgga tactctggct acactggctt
    38341 tcaactaccc caaacgttct gcattcttta ctaaagaatt aaaggagttt ttcctcctgt
    38401 gccgagaaca gcacgtatcc ccaactcaat acaaagggtc ttacgcaggt gccataggaa
    38461 aaccccaatt tatgccaagc agttatcgat attatgcagt ggactttaat aacaatggtc
    38521 gaagagattt agtcaatgac aatggtgact ctattgccag catcgccaat tatttgcata
    38581 aacatggttg gaacttaaat caaggcatcg ctcaaccggc caaaatctcc ggatggcgat
    38641 acaaacaact tcgcatgaac cctaaaacag caaattaccg atactcacaa cttataagct
    38701 atggagtaaa accaattaca gcgtcacaaa atcatcctcc tcgtgcagga gtcattgagt
    38761 tagttacaag gaagggtaaa gaatactgga ttgcctaccc caattttttt gtaattaccc
    38821 gctataattc gagccctcaa tatgctctgg cggtttactt attatcccag caattgaagc
    38881 aacattggta tactagtgcc accaaaaagc acagagctta tgtttaatgc cagctggaaa
    38941 taataataat tactggtata tactgaaaaa ttgacagcca taacaataca gagtttgact
    39001 tatggataag tgttttattt ttagcaaaca tctcgatgat aatggttgtg tatgcctgaa
    39061 aatatctgac ttgggtgagc tcattgctcc ccctgaattt cggaatttct cgcaaataaa
    39121 agatttacaa aaagaatcca gtacaattat tgtagaaacc tgtaccagag caatacttct
    39181 tggtcttgca attccatggc tacctgaaag aaaagccaga attgcaattc cctatgcact
    39241 agaggataaa gtaactcaac cagtcgaaga acttcatttt gcctttgata aattttatta
    39301 tcagaataac caatatctcg ttgttgtaat tgataaacaa cgaatgaaaa agttaattca
    39361 agtttttgat gagcatggga tagagtttga tgcagtaact cttgactggt ttgcgctagc
    39421 atctcaagaa ttgatcatta gtgaatccga gctattgatc aataacgaag attttaaagg
    39481 tgtcctctca ggtgatttgg ctcaaactta cctgaaaaat catccacaca ctcccgctca
    39541 tctgtttcaa gacagcaaaa tacctgtcgc ctctccagca agccaaaatg aagaacactc
    39601 ttacacctgg attagtaaaa gattgataaa atcaaaacca ctcaatcttt gtcaaggtga
    39661 aatacaacat ggaaaaacaa ccgattgggt taaaaaagga tacctattgg ttggcggatt
    39721 atgcggcttc tggttaattt ctattctttt tgttaattgg ctttctttgc attggctcaa
    39781 tagacaaata gatgaaattg accggcaaac cgcggttatt tatcgcgagt tttttcctga
    39841 tgccaaacag gtcatcagtc ctaagtttcg aataagtcag cttcttgggg ggagtactgc
    39901 agaaaatcaa actcgatttt ggtttatatt aaatcaatta tccaaagcca taaaagatag
    39961 tggtatcaca gtagagcaat taaggtatca aaacaaaaca atatcaatca cattggtaag
    40021 ttctgatttt gaaagcttac aaaaaattga aaataaacta aaacaatcac aactcaaagt
    40081 gaaacaaact caagcctcaa cgaaagatca acaagtagtt gcaactctgg agttaacgtg
    40141 aaaacctatt taaacacgct gaatgatcga gaaaagtgga tggttatagt agctggtgta
    40201 tcacttttta tttatggcta ctatttatta ctttacaccc cgctgagcaa ccaggtaaat
    40261 caaaaatcca ctcaattaat tgaaaaaact gaaacattgg aatggatgaa gcaagtaaga
    40321 atgcaaaaac gctctgccaa aagaaaggaa tctgtagata acagccaatt gttaactatt
    40381 cttgcttccc aacttaaaaa taataaaaca ctcaaattcc cctatcaatt acaacaaaca
    40441 ggctcggggg atgttcaatt aacctttgac gcagtccctt ttcaaaactt tatacaatgg
    40501 cttgcaaaaa tcaacgaagt ctattctatc aatataaaac aatttgatgt ggagaaaacc
    40561 tcaacaccgg gagtaacccg actgatgatc atactctcta caagttagaa ttgctattat
    40621 gtattagt
//
LOCUS       DACVWI010000007        40151 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.007, whole genome shotgun sequence.
ACCESSION   DACVWI010000007 DACVWI010000000
VERSION     DACVWI010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 40151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40151
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.007"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            146..1867
                     /gene="sidK"
                     /locus_tag="JBH85_01275"
     CDS             146..1867
                     /gene="sidK"
                     /locus_tag="JBH85_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector v-ATPase inhibitor SidK"
                     /protein_id="HAU0944817.1"
                     /translation="MSFIKVGIKMGGLTSEQYHSQVVGKIGYIARCMQTIDPENNLKK
                     IREDYQDVLIWAEKNYRFEEILEASKSGKCPNDLDALSRRSLILQELLRLVSSISPFK
                     MKLDLIESQYEKMKQHVNLWKSDYHVKLNQLNQLTDYLKNAAPTPKNNFLRAMTSVLQ
                     MQIAQYGITEDNEGINQLFKLGLHLLAMANEKIDEQYHLFKGYVKDQPEESPFEGILP
                     AEDQKILVKTMIDYAMPKLSSKVLQDKLSALSSSDVLTKTLLDSIDRIVKENEKLNAL
                     SKVKLGKFGLDIREIEVIYSQALKISPQDALQYTAQQCDAQLLSMAFPDSQNYIIESI
                     SNKKVKTIAELIHSKEFIYQIIKTEVFKQVDPNEKIRLQAATELYQLLGRIMDKQINL
                     FTKMNLEQINEYIQTKTKAILDKIPERVELLTFMGFEIPTFKGIETLMTDISHSQDNE
                     TLAIAQEFYTNIKNAKNQLLGDKLIEDITPQDVEKFFNQCSQYGSEAAEKLADNRPVL
                     TKIADILTAIARWAISLIGFNTPPQFLAPTRTCVDQVSDEITKIKLKLEDTLGSLQKV
                     QEESLSL"
     gene            2232..2825
                     /locus_tag="JBH85_01280"
     CDS             2232..2825
                     /locus_tag="JBH85_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0967 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944818.1"
                     /translation="MLPFKYRYMSGADIMTWSSSEQLEEEYLNARREYCMTMMAVHDK
                     ARALLSETPIDENMKQAIIKSSGVKIRPNETQDEFDERFEDEMGLTIDDYVDFALDVL
                     EKKLEPAKQSIVAAANKELGSLTSGQSGSAWEDFQHTIHEGAEYKTIEVAKCLPESER
                     CIQAFNQAKLAFRDAATNLIHAEKLDEPEEPNHGPRF"
     gene            complement(2971..4848)
                     /locus_tag="JBH85_01285"
     CDS             complement(2971..4848)
                     /locus_tag="JBH85_01285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HAU0944819.1"
                     /translation="MVFIMQKIIILTKKIIAKLPVILFDVAAIPVAWYAAYWLRYNMQ
                     PYPSSLTSTHSFIALALLSIVQISCYYYFKIYRGLWRFSSLNDVIRILKATITAMVLV
                     IPVFYLTSILQHLPRSVFPLYCIILATILCGGRLVIRLHWDKPGRGNRELETKRVLVV
                     GAGQAGEGLVRDLKRSSYYRPIGFVDDNKSKRGLEVHGVRVLGTTNQITELVNQYDVD
                     LIFIAIPSAKSATMRRIVTLCEQSHVPFSTLPSISALAAGRVEVNALRPVNIEDLLGR
                     DQVTLEWEKIARSIAGRRILITGGGGSIGSELCRQVMALEPASIAIVENSEFNLYRIE
                     QELLKSFPGIPVELSLISVTDEIAINHLFRRFQPEIVFHAAAYKHVPMLQHQVRVAVF
                     NNVIGTQVVAKASVTFGAEKFILISTDKAVNPTNIMGTTKRVAEIYCQNLNTRVKTQF
                     ITVRFGNVLGSAGSVVPLFQKQLQEGGPLTVTHPDMQRYFMTIPEACQLILQAMVNGE
                     GGEIFVLDMGEPVKISYLAEQMIRLAGKEPGRDIMIEYTGLRPGEKMYEELFHETEQL
                     TSTKHEKLFKARFRELDWNDLTQTMRMLQAACIEHQDEELLVLLKSLVPEFQLEPMVE
                     A"
     gene            complement(4903..6450)
                     /locus_tag="JBH85_01290"
     CDS             complement(4903..6450)
                     /locus_tag="JBH85_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein LphB"
                     /protein_id="HAU0944820.1"
                     /translation="MVLCYLDLYGIELMSAKWCWYDSLFILLFAYLLVLQIQAIWPFT
                     IDDMYISLRYAKNWAAGNGLLWNLNTEPVEGYSNFSFVALGAISIILHINPVLTLKIA
                     GFAGLLATCLFIFLISRFWFTKRESFIPCIWLLLYKGQVIWSVSGLETTVYQALISGS
                     VYFAFRGLGYHFYPAPRGEFKTSGFVLSGLYLSFAGMTRPETPALMLLFFLLIGWDRN
                     KLSGKKPWRGAVSFAVTIGLVFLPYFLWRWSYYRLLFPNSVYCKGFNGISYSLDLNYL
                     KLIWPFAILALPACFYAQDRRHYFLWSPGIIYLLMLVNADPVVAFDNRLFLPAFALML
                     PLTLNGISYLLLSYFKKQDNYFRAALYVSSFFLALLFIPKMSLDAYRYFSQNPVHGEQ
                     LRKSVVQWLNTHAKNQDRVVLADSGLIPFLSGLTFIDSYCLNNKEMAQFPAVKRYELF
                     CQQILEEKPQVIILTALIDKGKIIYTPSDSCLKPLLDVHKEYKLGGVFSFGSAESQYR
                     YELFANF"
     gene            complement(6411..7295)
                     /locus_tag="JBH85_01295"
     CDS             complement(6411..7295)
                     /locus_tag="JBH85_01295"
                     /EC_number="2.4.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decaprenyl-phosphate phosphoribosyltransferase"
                     /protein_id="HAU0944821.1"
                     /translation="MMELANKIIRVSYMDKLYQYLLLLRLSHWSKAIFVMLGFIYTPV
                     PGYLFPALLASLSFCLIASAVYIYNDIQDRTEDSLHPFKCNRPIASEQVTLFDAIIVM
                     LLLMVIGLALGWLISKKLVVILIIYLIINLAYNHVLKLIPVFDVACIALGFMLRVLAG
                     TIGIDLAISAWLTVAATLLSLFIALNKRQLEMQLGLKNSTRKVLRRYNPVFLQRLIVI
                     TGLACFITYLFYTVYARAESFFFILTLPFAAIALWRFAWLATQDVENDDPVNIFLSDR
                     LSRINLWCFAILTFMALN"
     gene            7625..8866
                     /locus_tag="JBH85_01300"
     CDS             7625..8866
                     /locus_tag="JBH85_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0963 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944822.1"
                     /translation="MRYILPAGALTSLNFLRDDYQSERKVDLDQPPSLIGVPTLFGGT
                     DVIARDKQTKFIKKMIVVLRANLAKEEEITTPEQWEANLTASRVVIAACLYVQSQISS
                     PKNNSALYRLINKDLGITDTNYLDDEDKEICFLAANRVVNSSLSAFSDANAALRKANM
                     KPFTEQEWSDFSKFVSSVSVKKVSTNPYSNYPVTSITQPLFGAAFSYTGATIGYLGGD
                     VISQSSKAMSTKLQITTMVGSSLLMLGTTGPMGVALFSQIIASKLVTAFFSISLAHVL
                     GTTMGIIGQGVGMGIGLPLDYAYRLIWKASATIMNYYSNYPNTSQMTGIRIADGKSIM
                     NGIVIEYTPSSDLKTEEGQQTVEITEEGKLLINGKEVTIPDGGVQLPLELINELKAQL
                     KLQEEKVSEEDSSSSTLLATI"
     gene            complement(8952..12398)
                     /gene="dnaE"
                     /locus_tag="JBH85_01305"
     CDS             complement(8952..12398)
                     /gene="dnaE"
                     /locus_tag="JBH85_01305"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HAU0944823.1"
                     /translation="MRQRFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSAVAVTDFC
                     NLFAAVKVFKSATEAGIKPIIGSDLPCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSK
                     AYQEGQYHGQPRVQLQWIQEFSQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNL
                     FPNRFYLEIQRTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCI
                     HEGYTLADPRRVQQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNY
                     LPNFPIPDGTTVEAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVI
                     NNMGFAGYFLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFER
                     FLNPERVSMPDFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRV
                     LGHPYGFVDKLAKLIPFELGITLSKAMEQEEELRRRYEEEEEVKELFDLALKLEGITR
                     NAGKHAGGVVIAPSQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTI
                     IDWALATVNKQCENAGLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISR
                     LQPDCFEDIIALVALFRPGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVIL
                     YQEQVMQIAQVLANYTLGAADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATH
                     IFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFI
                     DECAHMKLQVLPPSINNSMYHFTVSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPF
                     LDLFGFCQRLDLRKVNRRVIEALIKSGAFDIWKVERAVLTASLEKALKVAEKEHQNQS
                     SGQFDLFSLLEDKADEQNYVESKSWSEAQRLEGEREVLGFYLTGHPADQYRRELGDFI
                     VPVSQLNPSLHKKAIICAQVVAIRKIITKRGKKLVIIGMDDATARIDAVVFGEIFEQY
                     SDPLATGNMLVIEGEVAIDDYNGGVKMTANQLLSIASARTKFARCLELRLNQNNAAVL
                     PSIQSLLKTYSGRCAVQLAYANGVAKANLNLGQQWCVTPSDELIGLLSNLLGEEQVIM
                     RY"
     gene            complement(12473..13846)
                     /locus_tag="JBH85_01310"
     CDS             complement(12473..13846)
                     /locus_tag="JBH85_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0944824.1"
                     /translation="MITKEYEAKMTFELLWTDKCFLTLLAVVLFTVLLSLRKQHIKLS
                     FAIILQRPLAISAGIVLLLFLAIGVLDSIHIKFINDKTEKTQSLLDRVLAPIGNTYEK
                     TYSAPLALNQFMSETKLVNGVTTQVYPRLKYPPASIKNEKDKSLIIKSVLMKGITYSA
                     LVILGGCLLLALIKLSLGYKNTFILNSTQISAIATVAVLTFAVVIGYGLSRSFHVLGT
                     GQIGQDIFYFSLKSVRTGLIIGFLTTLFMLPLALFLGIAAGYFGGLVDDIIQYVYTTL
                     SSIPGVLLITASVLSLQTYIANHPEQFTTLAKSADARLLALCLILGVTSWTSLCRLLR
                     AETLKLREIDYVLAARALGSSWFTIVRKHLVPNVMHIVIITLVLDFSFLVLAEAVLTY
                     VGVGVSPMTISWGNMINGARLELARDPVVWWPMFAAFLLMFLLVLAMNLFADAVRDAF
                     DPHQSHL"
     gene            complement(13843..14820)
                     /locus_tag="JBH85_01315"
     CDS             complement(13843..14820)
                     /locus_tag="JBH85_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0944825.1"
                     /translation="MIKYILRRILYAIPILFGINLITFALFFMVNSPDDMARMHLGNK
                     HVEQKAIEDWKVVHGYDLPLFYNEKQTGFNQFRQTLFYQKSLMLFTFNFGVSDAGRDI
                     SHDISYRMWPSLAIALPTLLFAVLVNIIFAMAMAFFRSTYLDLSGVVICIILMSISSL
                     FYIIGGQYLFGKILKWFPISGYDDGLDALKFTILPVLVAVLGQLGAGARWYRTLVLEE
                     INKDYVKTARAKGLSEQRILFKHILKNAMLPILTGIVVIIPTLFMGSLVLESFFGVPG
                     LGSYIIDAIQQQDFAIVRAMVFLGSVLYIIGLVLTDFSYILVDPRVRLS"
     gene            complement(14817..17000)
                     /locus_tag="JBH85_01320"
     CDS             complement(14817..17000)
                     /locus_tag="JBH85_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAU0944826.1"
                     /translation="MRRYLLIQFMLFLMPCCVNLAYGSSWVFNNPYPESEANENIYYS
                     SFNEQPKTLDPARSYSSNEYLFIAQIYEPLLEYDYYKRPYELIPLTATQLPKIRYLDA
                     NGNPVPAGDNSKPAYSVYTIQIKKGILYQPHPALAQKKDGSYRYHHLPEDYLEEHDIG
                     KLSDFKYTGTRELIIDDYIYQIKRLANPAVSSPIYGLMSYYILGFKEYGDSLPKGLAN
                     KNSFIDLRKYPLKGVKKLDDYTFEITLKGQYTQFLFWLAMPFFAPVPWEADLFYSQKD
                     MDDKNLSFGWYPIGTGPFMLTENNPNRSMILEKNPNFREVYFPVNGSDADRRAGYLTN
                     LGRRLPLIDKAVYTLEKESIPRWNKFLQGYYDMSGISADSFDQAIHINRFGEPILSQE
                     MKDKKIYLRQTLEPSIYYTGFNMLDSVVGGNSKRARKLRQAISIAVNFDENIAIFFNG
                     RGIPAQGPIPPGIFGYKEGKEGINPYVYQWVNNARKRKSLKDAQKLMVEAGYPRGIDP
                     KTGKHLILHYDVMTTGGPDDKARLDWMRKQFANIGIDLNIRATLYNRFQEKMRIGHAQ
                     IFSWGWNADYPDPENFLFLLYGKNGKVKYGGENASNYENPEFDRLFNLMKNRPNDLQR
                     QKLIDKMLAIVRYDAPWVWGMHSEDFILSQDWVSNIKSNTISLNTLKYVSVNVPERNQ
                     LRRSWNQPVFWPLGVLFGLLIALVIPLLITYLKKEKQPAERVKLK"
     gene            complement(17102..19153)
                     /gene="ligA"
                     /locus_tag="JBH85_01325"
     CDS             complement(17102..19153)
                     /gene="ligA"
                     /locus_tag="JBH85_01325"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HAU0944827.1"
                     /translation="MLFLFWESSLMNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPD
                     AEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDE
                     LKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYEGGILTHAATRGDGAVGENITA
                     NIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNARARELGEKTFANPRNAAAG
                     SLRQLNPEISASRPLAIYCYGIGACEDYKLPNSHLEQLNLLKEFGFRVSPETRRAVGV
                     EGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRAPRFACAHKFPATEEM
                     TRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITRKDIRIGDTVIIRR
                     AGDVIPEVVSVILEKRPANARMIELPKNCPVCGSEVVREADEAIARCVGGLYCKAQLK
                     RMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLANLPRMGEKSAKN
                     LLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLNDIG
                     PVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLTGTLSTM
                     GREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFLKWVN
                     S"
     gene            19340..20245
                     /locus_tag="JBH85_01330"
     CDS             19340..20245
                     /locus_tag="JBH85_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944828.1"
                     /translation="MKMELLRILSTLIVLLFSSLIHSHSDTNSNQGIAFVHGTRDHRE
                     DAYGGYWKIDFIQSISQTLAKPENHYVVHCDFSQYMWHEDAANCVANQLLEFINDKNV
                     SSLTVYTHSDGANIMRWILSNPTYDGRYMTLKRKISQVIAIAPSSGGTPLADEVLNGG
                     IFETSLAWLLGYLSDAVKQQRVGDMLIYNEELLLGSKGRPSLSIPFKVIVGTDVYASP
                     FSTSSYCNGYMLNSGLKIAKLYLNQCADGFLDCESQAQAGEVWFYDIDKTDYNLPLSH
                     NQSRHSCFGLDQILISALVNEGVVK"
     gene            20242..21420
                     /locus_tag="JBH85_01335"
     CDS             20242..21420
                     /locus_tag="JBH85_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4785 family protein"
                     /protein_id="HAU0944829.1"
                     /translation="MKTAHLIWISAFCIAQAHAFTLPRQPTKAYECENCSQLSRENLH
                     DKWEITNEPLNNNISNVRRSYGYKERISLEQLQRGVIISTLAPGAVVRITPLQNKSIP
                     ELLIKTPKNQLLPLKEASSLYNQDDEVGNNPLAITKHQAMLQIKPELGYGKFILKSKD
                     ITNKYADAYMISVLDKFSITYLEVETDSLHYQYGDKLKATISLHNDITEYDVNDVDAR
                     LVGPKGQVISLNLTKLKSNVFEGTATLDSELNDRGENWYLETDVQTEYGQEIIRRSGH
                     TAFSYSIPSASLMNVKKLSSKPLTFVVTVDVATASRYALQSVLFQKNGKGEARPIQTS
                     QRAQWLEPGKHVLQFTFDNHNQLSDDNLYLGYLRLIDYGQLKTVYQYNQPVKLSQLVD
                     "
     gene            21424..22686
                     /gene="rmuC"
                     /locus_tag="JBH85_01340"
     CDS             21424..22686
                     /gene="rmuC"
                     /locus_tag="JBH85_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HAU0944830.1"
                     /translation="MALFSSVTLFEGIALAIALQFLLLFWVLIKQAQQKKLTEQLGER
                     IQQALISQLHQLHIDLSQSYQTSQQFINEKIAQGQLATQQLISDAIQRQMADVREQMT
                     HSFKHHASSLTSHLQLLTEEIRNHLNTLTQQVNHKLTEGFEKTSSTFIDVVKRLTIID
                     EAQKKITELSSHVVSLQDVLVDKKARGAFGEVQLSTLISNMLPSASYQMQYTLSNQKR
                     ADCVLFLPEPTGNIVIDAKFPLETYQRLINSDALSTDRKSLQQQFRQDIQKHIKDIAE
                     KYIVPNETTDGAMMFIPAESIFAEIHANYPDLIAMSQKLKVWLVSPSTLMAVLTTARA
                     VLKDDATRKQVHIIQKHLQALANDFQRFEKRMDKLSKHIDLAHQDVNEVNTSAKKITS
                     RFQKIESVDIELDEHEVTQLELVESESI"
     gene            22763..26224
                     /locus_tag="JBH85_01345"
     CDS             22763..26224
                     /locus_tag="JBH85_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HAU0944831.1"
                     /translation="MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLIT
                     QDNLCASQLQDELQFFLNPNQNTQELLFFPDWETLPYDQFSPHQDIISERLYTLSRVQ
                     QITNGIIISSASTLMHRLSPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVL
                     EHGEYALRGSIIDVYPMGSGLPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAR
                     EFPLNEQSQLHFRRAFRESFPGNPSHCPIYEAISNNQFPSGIEYYLPLFFDKTVTFFD
                     YLPANAKICLIEEIQENAERFWRELNERYEQRRHDVSRPILPPDNCFINPTELLTKAN
                     HYEQVRLYHKPSEKKGALNFNIAKAPQLPIDRKNIEPLRQLSEYCSDPTRRYLIVVES
                     AGRREVLLDLLKSSHIIPKTQNSWLDFIYDESPINITTGPLIYGCELTDKQIVIIVES
                     QLFGEQSTPQRRSTQKSVDPDLIIRDMAELRLGAPVVHLQFGVGRYQGLQYIDSNGTP
                     SEFLVLAYAGDDKIYVPVTSLHMISRYTGVDSEHAPLHKLGSEQWQKEKKKAAEKIHD
                     VAIELLDLYAKREAQPGHQYDFNQSEYIKFASGFPFTETPDQLQAIEQIIKDMQSPRP
                     MDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTLLAGQHFESFRDRFADFPVN
                     IELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNNISFKNLGLLIIDEEHRFGVK
                     QKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPPAKRLAIKTFWQEKND
                     LTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAKIQSAHGQMRERQLERI
                     MSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAY
                     AYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLGEEQSGNMHA
                     IGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYIGDIHNRLIMY
                     KRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQKISASAQQG
                     KLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTSAEERIFEISSLLNKLS
                     PHSQTID"
     gene            complement(26203..27870)
                     /locus_tag="JBH85_01350"
     CDS             complement(26203..27870)
                     /locus_tag="JBH85_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HAU0944832.1"
                     /translation="MPKESNSNSLFDLLLKNEKNSADRVYLRQPKNGVWHEYTWSSVM
                     LQARKVAGFLHHLGLKKGDHISIISKNCAEWFITDFGIHIAGMVNVPLFANQNEESAH
                     YVLDHGDVKLVFVGKLDDHQRVRQFIPKNYRTIGFDYHKDLQVDYEWSDVLKSDPMIN
                     LVEPEPDALYTIIYSSGTSGAPKGAMYTNRSIANYLTVFPKDLLRIRELEHYKLISYL
                     PLAHVYERSAIQLGSVAINASVSFVESLEKFAENLREVSPTFFTAVPRIWGVFKQKIE
                     QKLPPAKLNFLLKIPLISSLIKRKIIHSLGLSECTNCFSGASHLPISIIDFFEKLGIY
                     IQEGYGQSENLAYATLSMLNERKRGYVGTPRLEVEIKVGEENELLMKCPCLMSGYYKN
                     EQATKNAFTEEGWLRTGDVVDVDNEDRVKILGRLSENFKNQTGEFIAPSPIEKLFSVN
                     PMLEQLCLVGRELPNNVLLVTLNEGVRLGMPKEEITHSLQETLKQVNSKLVKYEKVSH
                     ILVLKDAWTTENDKLTPTLKVKRRVVEKDYAELIQKALQQSQSIVWE"
     gene            complement(27897..28775)
                     /gene="rssA"
                     /locus_tag="JBH85_01355"
     CDS             complement(27897..28775)
                     /gene="rssA"
                     /locus_tag="JBH85_01355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HAU0944833.1"
                     /translation="MTNQYPKIGLALGSGSARGWAHIGVIQSIKRLGVRIDCVAGCSI
                     GALVGAIYACGTLDLFEQWVLKLNKREMAKLIDVNFLGGGVLSGSKLMTFFKDFGLEK
                     NIEELSLPFSSVATDLSTGREIWLSKGSLELAIRSSMSLPGLFTPQRYKDCWLVDGGL
                     VNPVPITLCRAMGAEVVIAVNLNHDLLRVPPSTIEHPGFFSVLSGQFDKMIKRIMGIS
                     DGPGYYDVLTRSIKIMQDRITRARAAGDPADLTLVPQLGNIMLYDFHKAKEAIHEGEN
                     CVLREKNNILQLVGLE"
     gene            complement(28821..30263)
                     /gene="tldD"
                     /locus_tag="JBH85_01360"
     CDS             complement(28821..30263)
                     /gene="tldD"
                     /locus_tag="JBH85_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HAU0944834.1"
                     /translation="MTKSLAIAKNILLTPASLDEVGIEKLFKTMFNRNVDDADLYFQS
                     CSYESWYLEDSEVKSGNFSLDKGVGIRAVSGDKTGFAYCDDILLPSMLRAADAARSIA
                     LSGSKTVPAVKVLKASVNRYESLNPLEGMSKQEKIALLEAIDKEARSLDPRVIQVNAT
                     LTGCYEVVMVANMDGQMMADVRPLVSINVSVIVEDSHGRRESARSGGGGRVAYSYFTE
                     KENALSYAREAVREALTNLKAEPAPAGTMPVVLGPGWPGVLLHEAVGHGLEGDFNRKG
                     LSAFSGRLGQQVAAAGVTVVDDGTLENRRGSLTIDDEGTPSQCTTLIDNGILVNYMQD
                     KLNAKLMGMQSTGNCRRESYAHVPMPRMTNTYMLSGQYDPQEIIRTVKKGLYAVNFGG
                     GQVDITSGQFVFSASEAYLIENGKITKPVKGATLIGNGPDVMKKISMIGNDLALDRGI
                     GVCGKEGQSVPVGVGQPTLKIDALTVGGTK"
     gene            complement(30275..31081)
                     /locus_tag="JBH85_01365"
     CDS             complement(30275..31081)
                     /locus_tag="JBH85_01365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HAU0944835.1"
                     /translation="MNRVALVQMVSSAKIADNLQLTEQYLIEARAQEASLVVLPENFA
                     FMGMNEREKLQIAEYYGQGPIQQRISELARDLRVWIIAGTIPLKSMGSKVRASCIVYD
                     DKGLNVARYDKIHLFDVIVSEQEKHQESLTIEAGKDIALVDTPVGKIGLTICYDLRFP
                     ELYQYLTQRGAQLLSVPSAFTAVTGAAHWEVLLRARAIENLCYVLAPNQGGTHENGRH
                     TYGHSMVVEPWGKVLAQKEEGQGVILADIDLERLSQLRRQFPCVEHHVLM"
     gene            complement(31118..31300)
                     /locus_tag="JBH85_01370"
     CDS             complement(31118..31300)
                     /locus_tag="JBH85_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944836.1"
                     /translation="MFRTPVIYYQCSISMVKFPIFQVASLENFVIKFTYRPIDNLLLR
                     RKGFCVNFVLGLYGTI"
     gene            31300..31974
                     /locus_tag="JBH85_01375"
     CDS             31300..31974
                     /locus_tag="JBH85_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HAU0944837.1"
                     /translation="MNRNDITILSQQRESVLATNKVLRNTYLLLSLTFIFSALTAYVA
                     FISGARPMNPLLMIVGVYGLMFLTQALRNSVWGLVSVFAFTGFLGYTIGPLLNYYITG
                     FSNGPQIVATALGGTGMIFFALSGYALTTKKDFSYLGGFLFVGVMVALLAMIAGIFIQ
                     IPALQLVISAAFVLISSGLILLQTSAIIHEGETNYIMATIGLFVSIYNLFVSLLNLLS
                     AFSGRD"
     gene            complement(32303..33295)
                     /locus_tag="JBH85_01380"
     CDS             complement(32303..33295)
                     /locus_tag="JBH85_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HAU0944838.1"
                     /translation="MPLKRKLTMNSNYKREDFVNETEVRWCPGCGDYAILAALQRVLP
                     ELGLPPEQHVFVSGIGCAGRLPYYMNTYGFHTIHGRATAVATGLKAMREDLCVWVITG
                     DGDALSIGGNHLLHILRRNVNVNILLFNNQVYGLTKGQFSPTSQKGQVTKTSPKGVTS
                     EPINPIMIALASGASFVARAVDKDPVHLASVLKKAYEHKGCSFVEIYQDCNIFNHGAF
                     DDFAVKNNRAENTIILEDGQPLVFGAQKEKALQLDDEQFVQISIDEKTLYKHDEKNLI
                     SAMRLARLTFPDYPVPLGVYYQKDRERFTLSQEVKKRPEDLPELFKAKASWKQN"
     gene            complement(33255..35072)
                     /locus_tag="JBH85_01385"
     CDS             complement(33255..35072)
                     /locus_tag="JBH85_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HAU0944839.1"
                     /translation="MSTTDVIVVRITGDSGDGVQLVGEQLTISAALTGRDVRTMPDFP
                     AEIRAPAGTVAGVSGFQLAMAERAIFTAGESLDVLVALNPAALKNSLQHLNQGGLLII
                     NEDSFQERDWQKAGIDKSFLDNCREHYHIVAFPLITQTIQAVESINLTKPQAVKTKNF
                     YILGLVLWLFDLPTETCQAFIAKKFKTNQAIAKANELALLAGYNYAMTLELSRRDYML
                     GEVNRHSGEYRQITGVEAVGLALATLATQTQVPLLVSGYPITPASAILHECARLSDYG
                     VQLIQAEDEIAAICSCIGAAYGGRLALTCTSGPGLDLKCESLGLAVVTELPLVLVDVQ
                     RAGASTGLPTKTSQSDLKQALYGRHGEAPLPVIAAQSPADCFNTIIEAFRIAIKYMTP
                     VIVLLDAYLANAAEPWEIPALDSLNIPKPEFNRFTKPYHRDEFLSRSWNVPGTSGFIH
                     QIGGLEKQGDEGRVSYDAENHQKMVITRAEKIKGIARDYPALVLEGDMTAPTLVIGWG
                     STFGSLKSAVQQCLEQGLPVAYLHLRHLNPLPDDLGSLLKKYDKVLVAELNSGQLCQL
                     IRAVYLVDAQSISQCNGQPFSVNPLVSAIKAEANYEQQL"
     gene            complement(35059..35865)
                     /gene="pdxJ"
                     /locus_tag="JBH85_01390"
     CDS             complement(35059..35865)
                     /gene="pdxJ"
                     /locus_tag="JBH85_01390"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HAU0944840.1"
                     /translation="MNSSLSRTALYSAFYIFWCKMNKELLLGVNIDHIATIRQARGTR
                     YPDPVQAAMDAEEAGADGITLHMREDLRHIQARDVRLIKQVLQTRMNLELAVTEAMLD
                     FAEEISPEHACLVPEKREELTTEGGLDILTHRNVVEKAVRRLQLMGSEVSLFIDPDKE
                     QIRAAVDVGAPVIELHTGCYADATSEEKQHYELQRIKEAAEFAASLNLVVNAGHGLHY
                     HNVKPIAAIRELNELNIGHAIIARALFCGLKEAVRHMRQLMQEARLYVND"
     gene            36094..36984
                     /gene="legL1"
                     /locus_tag="JBH85_01395"
     CDS             36094..36984
                     /gene="legL1"
                     /locus_tag="JBH85_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegL1"
                     /protein_id="HAU0944841.1"
                     /translation="MVLTLSDLEKGYDKNLNQLSLSFLNLRDNDIPLLCEFLQNHPAI
                     TSLDLSHNDITANGVKLFVNKTSVSSLNISHNNIGPEGAQWLSEDNHITTLDVSFNEI
                     GDEGVKALAANAKLITLYALYNKITKVGAGYLAQSNLKKIDLCFNSLEDEGVIALASN
                     INIKELIASACDVSDIGAIELAKNNQLTLLILGKNAITDKSTLHFANNTSLSTLHLGS
                     NQITAAGKKILETNTRITDLDLIGNPIEVHETDELNYSKKSPDSHSVFKFLQKFTFLS
                     CMSPCQETAESDKGLNKKPN"
     gene            37147..38322
                     /gene="ravJ"
                     /locus_tag="JBH85_01400"
     CDS             37147..38322
                     /gene="ravJ"
                     /locus_tag="JBH85_01400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavJ"
                     /protein_id="HAU0944842.1"
                     /translation="MAIAPQQIQERLKQEQYQKFVVADIGNFPHCLAQTPEGIASGQR
                     YQKYSTNSLSRTPPFSQWGAPQLLTPKSAQEYIKFAQQRNKKSSFKIDGEAVRVSECS
                     NFAYHSAGVLLDDPQIRTQYDVAVIGSMHSNGRYLHNITLLVPKGSRLPQPPQQLTAE
                     VFPIGTLIVDPWAVGMGHPPEQALAIPKEQFAYNRSLFPATVNYQSALDESLTSTRTG
                     QLTPYTGTPSRTGRQEVRAESQFPGTRRPVSATIPGNFAAYHELWRNAFQEIMNDPRH
                     QLHRNDVEYKKIHAIRTVLDDYTKGGNTWWAKFRRIFTFHWNRHHVKVVDDIVKEIDA
                     GNYTTSRALVDRLDNLAISLGSKLNPKGTLKEQIGFIKIQEQNPVEEIENLSRPNLT"
     gene            complement(38378..39067)
                     /gene="recO"
                     /locus_tag="JBH85_01405"
     CDS             complement(38378..39067)
                     /gene="recO"
                     /locus_tag="JBH85_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HAU0944843.1"
                     /translation="MTSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPK
                     KQSLLQAFIPLWVSIEERYDQYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPD
                     FPDPDLFDAYLFTLNGIALAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIV
                     PDSYYQFVAGEGFILGGDKEIPGEHLLAIAADNLSESAYLKSAKFIMRQAINHLLGGR
                     EIKARSLYGPA"
     gene            complement(39057..39992)
                     /locus_tag="JBH85_01410"
     CDS             complement(39057..39992)
                     /locus_tag="JBH85_01410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HAU0944844.1"
                     /translation="MTWLLECFKNKQESRLMSSYCGYIALVGRPNVGKSTLLNRILQQ
                     KLSITSRKPQTTRHSILGIRTEGEFQFVYVDTPGIHQGNAKAINRMMNKTAISVLRDV
                     DVIAFLVDGTHWKDEDEYVLNLIKQAKVPCILVVNKVDKITDKTQLLPWIEQISQRYQ
                     FAAIIPLSAKTGLQVDELEGKLKNYLPEGPHLFPDDQFTDRSTKFLCAELLREKIFRF
                     CGQELPYSVTVDIESFKDEGNLIRIHALILVDKDNHKRMIIGDKGQKLKEMATNARLD
                     MEKMLDKKVFLQCWCKVKSGWSDDERILKQLGYDQ"
BASE COUNT        12810 a         8791 c         7028 g        11522 t
ORIGIN      
        1 aaaaaatggg cttcattatt tgaattaaat atttgaaaac agtaattttt cttaacaaaa
       61 tccatacata atttactaaa tggaaacttt tacatggcaa taccttgaat tttttaccca
      121 ttattgatac tatttggaca attaattgtc ttttatcaag gtaggtataa aaatgggtgg
      181 cttaactagc gagcaatatc atagtcaagt agtcggtaaa atcggatata tcgccagatg
      241 catgcaaact atagatcctg aaaataattt gaaaaaaata agggaagatt accaagatgt
      301 attgatatgg gcagagaaaa attatcgttt tgaggaaata ttggaagcca gcaaatctgg
      361 aaaatgccct aatgatctgg atgcattaag tcgacgatcg ctaatactcc aagaattgct
      421 gcggcttgtt tcatcaatta gtccctttaa aatgaaatta gacctgattg agtctcaata
      481 tgagaaaatg aagcagcatg tgaatttatg gaaaagtgat taccatgtaa aactaaatca
      541 actgaatcaa ttaacagatt acctcaaaaa tgcagcacca actcctaaaa ataattttct
      601 aagagcaatg acctctgtat tgcagatgca gatagcccaa tatgggatta cagaagataa
      661 tgaaggcatc aaccagttgt ttaaactggg attgcatttg ctcgcaatgg ctaacgaaaa
      721 aatagatgaa caatatcacc tgtttaaagg gtatgtaaaa gatcagcctg aagaatctcc
      781 ttttgaaggt attttgcctg cggaagacca gaaaatttta gttaaaacta tgatagatta
      841 tgcaatgccg aagctttcaa gcaaggtttt acaagataaa ttatcggcac tatccagttc
      901 tgatgtatta acaaaaacat tacttgatag catcgacaga attgttaaag aaaacgaaaa
      961 attaaatgct ttaagcaaag tcaaattagg taaatttggc ctggatatca gggaaattga
     1021 agtgatttac tctcaagctc tgaaaatatc accacaagat gctttgcaat atactgctca
     1081 acaatgtgat gcccaattat taagcatggc atttcctgat tcccaaaatt acattattga
     1141 atctatatcg aacaaaaagg tcaagaccat tgcagagcta atccatagta aagaatttat
     1201 ttatcaaatt attaagacag aagtttttaa acaagttgat cctaatgaga aaattcgact
     1261 acaagctgcg acagaattgt atcagcttct tgggagaata atggataaac agattaatct
     1321 ttttaccaag atgaatctcg aacaaattaa tgaatatatt caaaccaaaa ccaaagcaat
     1381 cctggacaaa attcctgaaa gagttgagtt attaactttt atgggctttg aaattccaac
     1441 tttcaaggga attgagacac ttatgaccga catctcccat tctcaggata atgaaactct
     1501 ggcgatagcc caagaatttt atacaaatat aaaaaatgca aagaaccaat tgttgggtga
     1561 taaactgatt gaagacatta ctccacagga tgtagagaaa ttttttaatc aatgtagtca
     1621 atacggttca gaagcagctg aaaagttagc tgacaatcgt ccggtattga caaaaatagc
     1681 cgatattttg acagccattg cccgttgggc gattagttta ataggtttca atacgccacc
     1741 gcagtttttg gctccaacca gaacctgtgt ggatcaggta tctgatgaaa tcactaaaat
     1801 taaactcaaa cttgaagata ctttgggaag cttgcaaaaa gtacaggaag aaagcctaag
     1861 cctttaataa cgattaagtc cataataaaa aattcttgat ataagaattt acctgttatc
     1921 agagatgttc tcccggatta cagctttcct gcaatccgga gcgctcttta taatgagatg
     1981 atgcatcata tacctactaa tgggtctggt ggttagcaca gattttaccc ctccctcccc
     2041 ccagcaatct tccgcgaaat gcaccaccat actacctaag ctcatggggc gagagagagc
     2101 agatcgaagt gaaattaaaa tccccgctca attcaagatt aaatgttcac taaaaattta
     2161 gggatattga cttagtattc accacaaccc aattggtatt gttactgtca ttttgaataa
     2221 ttataaatcg aatgctacct tttaaatata ggtatatgag tggagcagat atcatgacct
     2281 ggtcaagtag tgaacaactt gaggaagaat accttaacgc aaggagagag tattgtatga
     2341 caatgatggc cgtacacgac aaagcaaggg cattgctgag tgaaactcca atagatgaaa
     2401 acatgaagca agctataata aaatcaagcg gggtaaagat tcggcctaac gaaacacaag
     2461 atgaattcga tgagcgcttc gaggacgaaa tgggtttaac gatagatgac tacgttgatt
     2521 ttgcgcttga tgtattggaa aaaaaattgg aacccgcaaa gcagagtatt gtagctgctg
     2581 caaataaaga acttggttct cttacttctg gacaatctgg ttcggcatgg gaagattttc
     2641 aacatacgat ccacgaggga gcagaatata aaactataga agtggctaag tgtctccctg
     2701 agtctgagcg ttgcatacaa gcctttaatc aggctaagct ggcatttcgt gatgcagcca
     2761 caaatttaat acatgcggag aaactggatg aaccggaaga accaaatcac ggccccaggt
     2821 tctaaaacaa gggcccggga agatgtaaga agctaagaaa ttcttttgct gtttttcatt
     2881 ttaccatcaa attatgagaa aatagcgttt caaaatcaac ataagtaatt gacataacac
     2941 aatcttgatt taccagatta ggtctattgc ttaagcttca accataggtt ccaattgaaa
     3001 ctcaggcacc agacttttta acagaacaag caattcttca tcctgatgct caatacaagc
     3061 tgcctgcaac attcgcatgg tttgtgtcaa atcattccaa tccagttcac gaaaccttgc
     3121 tttgaatagt ttttcatgtt ttgttgaagt taactgttca gtctcatgaa acaactcttc
     3181 atacattttc tcgccaggac gcaaccctgt atattcaatc atgatgtctc ttcccggttc
     3241 tttgcctgcc aagcgaatca tttgctctgc aagataactg attttaaccg gctctcccat
     3301 atccaggaca aaaatttcac cgccctcccc attcaccatc gcttgcaaaa tcaattggca
     3361 tgcttccggt atagtcataa aatatctttg catatcggga tgggtcacag tcagtggccc
     3421 cccctcctgc aactgttttt ggaacaaagg caccacacta ccagctgaac ccaagacatt
     3481 tccaaaacga accgtaataa actgggtttt aactcgtgta tttaaattct gacaataaat
     3541 ttcagcgact ctcttggtag ttcccattat attcgttgga ttcactgctt tatcagtgga
     3601 aattaaaatg aacttctcag ctccgaatgt cacactggct ttggcaacaa cctgagtacc
     3661 tatgacatta ttaaacacag caactcgtac ttgatgctga agcatgggaa catgtttgta
     3721 tgcagccgca tgaaatacaa tttcaggttg aaaccgacga aataagtgat taatcgcaat
     3781 ttcgtctgtc acactgatta aactcaattc aacgggaata cctggaaaac tctttaacaa
     3841 ctcctgttca atgcgataca ggttaaattc actattctca acaatagcta tgctcgcagg
     3901 ctctaaagcc ataacctgac ggcacaattc cgaaccgatt gagccaccac cgcctgtaat
     3961 caatatgcgt cttcctgcga ttgaacgagc aattttttcc cattcgagcg tcacttgatc
     4021 ccgacccaat aaatcctcaa tattcacagg cctcagcgca ttcacttcaa ctcgacccgc
     4081 agccagggct gaaatactgg gtaaagtact aaaaggcaca tggctttgtt cacaaagcgt
     4141 tacaattctt cgcatggttg ccgatttggc agaaggtatg gcaatgaaaa tcaaatccac
     4201 gtcgtactga ttgactaatt cggtaatttg gttggtcgtt cccagaaccc gcactccatg
     4261 aacttctaat cctctcttgc ttttattgtc atctacaaag cctattggcc gataataact
     4321 gcttcttttc aaatcacgca ccaagccttc accagcctgc ccggcaccaa ccaccaaaac
     4381 tcttttcgtt tccaattccc tgtttcctct gccaggctta tcccaatgca gacggattac
     4441 caaccttccc ccgcaaagga tggtagccag gataatgcaa tacaaaggaa aaactgatct
     4501 gggcaggtgc tgaagaattg aagtcaagta aaaaacaggg attactaaaa ccattgctgt
     4561 gatagtagcc ttcagtatcc tgatgacatc attcagagaa gagaaacgcc ataatcctct
     4621 gtaaatttta aaataatagt aacaactaat ctgaacaatt gataataaag ctaaagcaat
     4681 aaaagaatgg gtggatgtca ggctgctggg atatggctgc atgttatagc gcaaccagta
     4741 agcggcatac caggcaactg gtattgcagc cacatcaaac aaaattactg ggagttttgc
     4801 aatgattttt tttgtcaata tgattatttt ttgcattata aaaaccacag tctgtaatcc
     4861 tttataaagg aaagatggta cactatgtta cagtttcccg catcaaaaat tagcaaacaa
     4921 ttcataccta tattgtgact cagcactgcc aaaagaaaaa acaccaccca atttgtattc
     4981 tttatgaaca tcaagtaatg gtttcaaaca agaatcactg ggagtataaa tgatctttcc
     5041 tttatcaata agcgcagtca aaataattac ctgtggtttt tcttctaaaa tctgctggca
     5101 aaataattca tatctcttca cggcaggaaa ttgtgccatt tccttattat tcaggcagta
     5161 agaatcaata aaagttaatc cgcttaaaaa cgggatcaaa ccagaatctg ccaacaccac
     5221 tctatcttga ttcttggcat gagtatttaa ccattggaca acacttttcc gtaattgctc
     5281 tccatgtacc ggattttgac taaagtagcg ataagcatca agggacattt tgggtataaa
     5341 tagtagcgcc agaaaaaatg agctcacata caatgccgct ctaaagtaat tatcttgttt
     5401 tttgaaatag cttaataaaa gataactgat accattcaag gtcagaggta acataagagc
     5461 aaacgctggc aagaacaatc gattatcaaa agcgacaact ggatcggcat tcacaagcat
     5521 taataaataa ataataccgg gagaccataa aaaataatgc cttctgtcct gagcataaaa
     5581 acaggctggc aaagccagaa tagcaaatgg ccaaattaat ttgagataat tcaaatccaa
     5641 tgaataggat atgccattaa agcctttaca atatacagag ttaggaaaca ataacctgta
     5701 ataactccaa cgccaaagaa aataaggcag aaacaccaaa cctatagtca ccgcaaaaga
     5761 taccgcccct ctccatggct tcttgcctga taatttattc cggtcccaac cgattaaaag
     5821 aaaaaaaaga agcatcagcg ctggtgtttc aggcctggtc attcctgcga atgaaagata
     5881 caaccctgac aagacaaaac cacttgtctt aaactcacct ctaggagcgg gataaaaatg
     5941 atatcctaac ccgcgaaaag caaaatagac tgaaccgcta atcagtgcct ggtaaacggt
     6001 cgtttcaagg ccgctaactg accaaataac ttgtcctttg tatagtaaaa gccaaatgca
     6061 ggggataaaa gactctcgtt tggtaaacca aaagcggctg ataagaaaga taaaaagaca
     6121 cgtggcaagt aatccagcaa acccggcgat ttttagggta agaactggat taatgtgcag
     6181 aataattgat attgccccca aagcaacaaa gctgaaattg gaatagcctt cgaccggctc
     6241 agtgtttaaa ttccataata agccatttcc tgcagcccag tttttggcat accgcaaaga
     6301 aatatacatg tcatctatag tgaacggcca tatggcctgg atttgtaaaa ccagcaaata
     6361 agcaaacaaa aggataaaca ggctgtcata ccagcaccac ttagcactca tcaattcaat
     6421 gccataaagg tcaagatagc aaagcaccat aagttgattc gagataatcg atcacttaaa
     6481 aaaatattga ctggatcatc attctctaca tcctgagtgg caagccaggc aaaacgccat
     6541 agtgcaatag cagcaaaagg taaagttaaa atgaaaaaaa acgattctgc tctggcataa
     6601 accgtgtaaa acagataagt aataaagcag gctaatcctg taatgacgat aagtctttgc
     6661 agaaagactg gattatatcg gcgtagaacc ttacgggttg aatttttcaa tcccaactgc
     6721 atttccagtt gtcttttatt tagggcgata aataaactaa gcaaagtcgc tgcaacagtt
     6781 aaccaggctg atatagccaa atcaattcct attgttccgg ccaaaactct gagcataaat
     6841 cccaaggcaa tacaagcgac atcaaaaacc ggaatcaatt ttaaaacatg gttataagca
     6901 agattgatta tcaaataaat aattaaaatg accaccagct tttttgaaat aagccaaccc
     6961 agcgcaagtc caataaccat taataagagc attacaatga tcgcatcaaa taaagtgacc
     7021 tgctcgctgg ctataggcct attgcattta aaaggatgta gactatcttc cgttctatcc
     7081 tgaatatcat tgtaaatata aacggcactt gcaataagac aaaaagatag tgaagccaat
     7141 aatgccggga acaaataccc cggaacagga gtataaatga aaccgagcat aacaaaaatt
     7201 gctttactcc agtgcgataa acgaagaagt aaaagatatt ggtataactt atccatgtaa
     7261 cttaccctga tgattttatt tgctaattcc atcatacaaa tctacccttt tctcaaaaac
     7321 agctaaaaca gttctgtcat ttctaatcaa agtattaatg accgcctcaa tcaggctaca
     7381 ggacatggat ttgttttaat tttaaattaa ttacacccta taagagtaac atatctagct
     7441 caaggctaaa aatagtataa tcgcaaaaaa atcatcattt caaagagtta aatcataaat
     7501 aaaatctgtt gccttatctg attgcaacaa tttagtaaaa attaaccaaa tcagattgca
     7561 tttaaccagc taatcggtaa gataaaaaac acacaaataa attttcaatg gatatgaggt
     7621 tattatgcgc tatatactgc cagcaggagc tctaaccagc cttaactttt tacgcgatga
     7681 ctatcaatca gaaagaaaag tggatttgga tcaacctcca tctttaatcg gagtacctac
     7741 tctttttgga ggcactgatg tcatagccag agataaacaa accaaattta taaaaaaaat
     7801 gattgttgtc cttagagcaa atctggcaaa agaggaagaa atcacaaccc ctgaacaatg
     7861 ggaagcaaat ttaactgctt ctagagtcgt catcgcagcc tgtctatatg ttcaatcgca
     7921 aatttcatct cccaaaaata actccgcatt atatcgattg attaataagg atttaggcat
     7981 tactgataca aattatctgg atgatgaaga caaggaaatc tgctttttag ctgccaatag
     8041 agtggtcaac tcctctttat ccgcatttag cgatgccaac gcagccttgc gcaaagccaa
     8101 tatgaagcca tttaccgagc aggagtggag tgacttttcc aagtttgtca gtagtgtgag
     8161 tgttaaaaag gtatctacca atccttactc gaactatccc gtcacatcca ttactcaacc
     8221 tttattcgga gccgcttttt cttatacagg agcaacgatt ggttatcttg ggggggatgt
     8281 tattagccaa tcctccaaag cgatgtcgac caaactacaa attactacca tggtgggaag
     8341 cagcctgctg atgctcggta caacagggcc tatgggtgtg gcgttgttct ctcagatcat
     8401 agcaagtaaa ttagtcacgg catttttcag tattagtttg gctcatgttt taggaacaac
     8461 catgggtatt atcggacaag gcgtaggaat gggcattggg ttacctttgg attatgccta
     8521 cagattaata tggaaagcca gcgccactat tatgaattac tacagcaact atcctaatac
     8581 ctctcaaatg acgggtattc gtattgcgga tggcaaatcc atcatgaatg gcatagtgat
     8641 tgaatacact ccaagctctg atttaaaaac tgaagaagga cagcaaacag ttgaaattac
     8701 tgaagaagga aaacttctta tcaatggaaa agaagtcact attcctgacg gcggagttca
     8761 acttccacta gagttaatta atgaattaaa agctcaattg aagctgcagg aggaaaaagt
     8821 tagcgaagaa gactcttcct cttccacatt gttagcaact atttgatgta gatgagacaa
     8881 ctatcattct gcaatgcgag ttgagccgtg ctatctgctc aactccacag gcgctatcat
     8941 tagcagtatt tctaataacg cattattact tgctcttccc ctaaaagatt gctcaatagc
     9001 ccaattaact catcactagg ggtcacacac cattgttggc caagatttaa attagcttta
     9061 gcaacaccat tagcataagc caattgaaca gcgcaccgtc ctgaataagt cttcagtaag
     9121 gattggatag aaggcaatac agcagcattg ttttgattta aacgcaactc cagacaacga
     9181 gcgaattttg ttcgagctga agcgatactt aaaagctgat tggcggtcat tttaacacca
     9241 ccgttgtaat catcaattgc aacctcgccc tcaattacaa gcatgttacc cgtcgccaat
     9301 ggatcagaat attgttcaaa aatctcacca aaaactacgg catcaatcct ggcagtcgca
     9361 tcatccattc caataatcac taatttcttg ccacgtttgg tgataatttt tctaattgct
     9421 acaacctgag cgcaaataat cgctttttta tgtaaagacg gatttaattg gctgacagga
     9481 acaataaaat ctcccaattc acgtctgtat tggtcagcag gatggccagt gaggtaaaaa
     9541 cctaatacct ctctttcgcc ttctaatcgt tgagcttcag accaggattt actttccaca
     9601 taattttgtt catccgcttt gtcctctaaa agggagaata aatcaaattg tccacttgat
     9661 tgattttgat gttccttttc ggcaactttc agtgcttttt ccaaggacgc tgttaacaca
     9721 gccctttcca ctttccaaat atcaaaagca ccactcttga ttaaagcttc aatcactctt
     9781 ctgttgactt tgcgtaaatc caatctttga caaaaaccaa acaaatccaa aaaaggtcca
     9841 ttctggtttc tctcctgaat aatacactca atcgcagatt cgccaactcc ctttattgcc
     9901 ccaaggccat aaataatcgt cttttcatcg gacacggtaa aatgatacat ggagttattg
     9961 atagaaggag gcaacacttg taatttcatg tgcgcgcatt catcaataaa agttacaacc
    10021 ttatccgtgt tatccatatc agaggacatc actgcagcca taaaagctgc aggataatgt
    10081 gcttttagcc aggcggtttg ataagcgact aaagcatacg cggcagaatg tgatttattg
    10141 aatccatatc cggcgaactt ctccattaaa tcaaaaatat gggttgctac ttgctcatct
    10201 actcctctcg caacagctcc ctgggtaaaa atttcccttt gctttgccat ttcttccggt
    10261 tttttcttcc ccatggctcg tcttaacaag tcagcagcgc caagcgtgta attggccaga
    10321 acctgagcga tttgcattac ttgttcttga tagaggataa ccccataagt gggtttaaga
    10381 attggttcca agtctggatg ggggtaatca actcgagccc tgccatgctt cctgtcgata
    10441 aagtcatcca ccatccctga ctgtagagga cctggtctga ataaagcaac caaagcaatg
    10501 atgtcttcaa aacaatcggg ttgcagccgg ctaatcagct ccttcattcc tcgagattcc
    10561 aactgaaata cagcagtagt tttacatgct tttaataact caaaagtaga gtcatcactc
    10621 gttggaattt gactaatatc aattggtgac aacccggcat tttcgcattg cttattcact
    10681 gtggccagag cccaatcgat tatggttagt gttcttaacc ctaaaaaatc aaacttgact
    10741 aacccaaccg cctcaacatc gtctttatca aattggctaa ctatttgtgt tgatccttct
    10801 tcacaatata tcgctgtgaa atcagtcagc tgagaaggtg caataactac tcccccagca
    10861 tgcttgccgg cattacgagt aattccctcc agtttcaggg caagatcaaa tagctctttt
    10921 acttcctcct cttcttcata tcgtcggcgc agctcttctt cctgctccat cgctttactt
    10981 aaagttattc ctaactcaaa gggaattaat ttcgcaagct tatccacaaa gccataagga
    11041 tgacctaaaa cacgcccaac atctctcacc acagcctttg cggccatagt gccaaaagta
    11101 ataatttggg aaacactctg ccggccatat ttctctgcta catattcaat gacccgatca
    11161 cggccttcca tgcaaaaatc aatatcaaag tcaggcatag aaacacgttc ggggtttaag
    11221 aatcgttcaa aaagcagctc atactctaaa ggatccagat ctgttatttt taaggcataa
    11281 gcaaccagag aaccagcacc agaaccacga cctggtccta ctggaacccc attttgttta
    11341 gcccattgaa taaaatcagc aacaatcagg aagtaaccag caaagcccat gttattaata
    11401 acatccagtt caattttaag gcgtttgtcg tactcccctc tggcagcaag cagctccccc
    11461 tcagacttgt ctctgaataa ttgctttaaa cgttcctcca agccaatttc agaaagatgt
    11521 gataaatacg cctctactgt tgttccatcc ggtataggga aattaggtag ataattatgg
    11581 cccagctcga gtttcacatt acagcgttta ctaatttcga ctgtgttttg taatgcactg
    11641 ggaagatccg agaataatag ctccatttca tctgctgagc gcagatactg ttgggagctg
    11701 tattgttgaa ctctcctggg atcagccaac gtgtaccctt cgtgaatgca tacacgagct
    11761 tcatgagcat caaaatcatc ctcatcgatg aacctaacgt cgttggttgc aaccaaaggt
    11821 aattgcaatt cgtccgctaa cgcgatcagc ttctcattat aatgcaactc atcagctctt
    11881 ccggttcgct gaatttccag ataaaatcga ttcggaaata aattcatcca atgcaaagca
    11941 cgttttcttg ccaaggtgtc atcatttgcc agcaatgctt gcccaatatc accgaacttt
    12001 cctccggata atgcgattaa tccctgtgaa aactcttgaa tccattgtaa ttgcaccctg
    12061 ggttggccat gatattgccc ttcctgatat gctttggata ccagacaggt taaattttta
    12121 tagcctgctg tgtcttgaca taacaaaacc aaagaaaaaa tgttatccgg ggtttccaaa
    12181 tcatggcatg gcaaatcact accaataatg ggtttgattc ctgcctctgt cgcactttta
    12241 aatactttga cagcagcgaa taaattacaa aaatccgtta cagcaactgc gctcatacct
    12301 ctggctggca aagctttcat caatggttta atctgtacca aaccatcaac taatgaaaat
    12361 tccgtatgta ctcttaaatg aacaaaacgt tgtcgcatag agaattaacc cactcacgat
    12421 aatttcgaaa ctttaaccta aatcccggaa ataggaaact aacagatatt gactataaat
    12481 gagattgatg tgggtcaaaa gcatcccgta ctgcgtctgc aaacaagttc attgccaaaa
    12541 ccaataaaaa cattaacaga aaggctgcaa acataggcca ccatacaaca gggtcacgtg
    12601 ctaattcaag gcgcgcgcca ttaatcatat ttccccaact aatagtcatg ggtgaaacac
    12661 ctacccctac ataggtcaat acagcttctg ccaagactaa aaaactgaaa tccaatacca
    12721 gggtgatgat aacaatatgc atgacattgg gcaccaaatg tttgcgtacg atagtaaacc
    12781 aactactgcc taaggcacgt gcggccagga cataatctat ttcccgcaat tttaatgttt
    12841 ctgctcgcaa aagtcggcac aggcttgtcc aactggttac acccagtatc aagcaaagag
    12901 ctaataaacg cgcatcggca ctcttggcca aagtagtaaa ttgctccggg tggtttgcaa
    12961 tataagtttg caatgacaat acggaagccg taatcagcaa aacacctgga atggagctta
    13021 aagtagtata aacatactgg ataatatcat ccacaagccc accaaaatat cctgctgcaa
    13081 tccccagaaa taaagccaat ggcaacatga agagggttgt taaaaaacca atgattagac
    13141 ccgttcgcac acttttcaaa ctgaaataaa aaatatcttg tccgatttgc cctgtgccca
    13201 agacatgaaa ggatcttgat aatccgtaac caatgacgac cgcaaaagta agtacagcta
    13261 cagtcgctat agcgctgatt tgagtagaat ttaaaatgaa agtattttta tatccaagac
    13321 taagctttat taaagcgagt aataagcatc cacccaaaat gactaaagca ctgtatgtta
    13381 tacctttcat aagcacagat ttgatgatga gggatttgtc cttttcattc ttaatagaag
    13441 ctggtggata ttttaagcga ggataaacct gagttgtaac tccattaacc aactttgttt
    13501 cactcataaa ttgatttaaa gccaagggag ctgaataagt tttctcatag gtattcccta
    13561 taggtgcaag aactctatcc aatagagact gagttttttc tgttttatca ttgatgaatt
    13621 taatatgaat agaatccaaa acaccgatgg ctaaaaacag caacaacaca attccagcac
    13681 tgattgctaa cggcctttgt aaaatgattg caaatgacaa tttgatgtgt tgttttctaa
    13741 gactcagcag aacggtaaat aaaaccaccg ccagtaaagt aagaaaacat ttgtcagtcc
    13801 aaagcaattc aaatgtcatt tttgcctcat actccttggt tatcaggata atcgcactcg
    13861 gggatcaact aggatgtaag aaaaatcagt cagaaccaag cctatgatgt aaagaactga
    13921 ccccagaaat accatagctc gtacaatagc aaaatcttgc tgttgtatcg catcaataat
    13981 atagctaccc aggcctggca caccaaaaaa agactctaaa accaaacttc ccataaacaa
    14041 agtaggaatg attacaacaa ttccggtcaa aatgggtaac atggcatttt ttaatatatg
    14101 cttaaataaa atcctttgct cagagagccc ctttgctctt gcggttttta cataatcttt
    14161 attaatttct tccaaaacca aggttcgata ccaacgcgct cccgcaccca attgtcccag
    14221 aacagctacc aggactggta aaatagtaaa ttttaaagca tcgaggccat catcgtagcc
    14281 ggaaataggg aaccatttta atatttttcc aaacagatat tgcccgccaa tgatgtaaaa
    14341 caaactggaa atggacatta ggataataca aataactacc ccggataaat caagataagt
    14401 cgaacggaaa aatgccatag ccatagcaaa aatgatattc accaaaacag caaataataa
    14461 tgttggcagg gcaatggcaa ggcttggcca cattctgtag gatatatcgt ggctaatatc
    14521 tctaccagca tccgagacac caaaattaaa tgtaaacaac atcagcgatt tttgataaaa
    14581 caaagtctgt ctaaattgat taaatccagt ctgcttttca ttataaaata acggtaaatc
    14641 atagccatga accactttcc aatcttcaat ggctttttgc tctacatgtt tattacccaa
    14701 gtgcatacgt gccatatcat cgggagaatt aaccatgaaa aacaatgcaa aagtaataag
    14761 attaatacca aacaaaattg gaatcgcata taaaattctg cggagtatgt atttaatcat
    14821 tttaatttta ctctttctgc cggctgtttt tctttcttta aataagtaat caataaaggg
    14881 attaccagag caatcaatag gccaaacagc acacctaaag gccaaaatac cggttgattc
    14941 caggatcttc gcagttggtt acgttcaggt acattaacag aaacatattt tagagtattg
    15001 agagaaatcg tattggattt tatattagat acccaatctt gcgataaaat aaagtcttca
    15061 gaatgcatgc cccataccca tggagcatca taccggacaa tcgctaacat cttatcaatc
    15121 agtttttgtc tttgtagatc gttagggcga tttttcatca aattaaacaa tctatcaaat
    15181 tcaggatttt cataatttga tgcattttca ccaccatact tcacttttcc atttttccca
    15241 taaagcaaaa ataaaaaatt ttcgggatca ggataatcgg cattccagcc ccaactaaat
    15301 atttgagcat gacctatccg catcttttcc tggaaacgat tgtaaagagt cgccctaata
    15361 ttcaaatcta tccctatatt tgcaaattgc tttcgcatcc agtcaagcct tgctttatca
    15421 tcaggtccac ctgtcgtcat gacatcataa tgaagaatca ggtgtttccc agttttcgga
    15481 tctatccctc tcggatatcc tgcctcaacc attaacttct gcgcgtcctt taaggatttg
    15541 cgtttcctcg cattattcac ccattgataa acatagggat taataccctc ttttccttcc
    15601 ttgtacccaa agataccagg tggaataggg ccttgcgccg gaatacctcg gccattaaaa
    15661 aatatggcaa tattttcatc aaaattcacc gcaatagaaa ttgcctggcg taattttcgt
    15721 gctcttttgc tattgccccc aacaacgctg tcaagcatat taaagccagt ataatagata
    15781 gacggttcca gggtttgtct taaatatatt tttttatctt tcatttcctg gctaaggata
    15841 ggttctccaa agcgattaat atgaatagcc tgatcaaaac tgtcagcact tatccccgac
    15901 atatcatagt agccttgcaa gaatttattc catcgaggta tggattcctt ttcaagggta
    15961 taaacggctt tatcaattaa gggcaagcgc cttcccagat tggttaaata acctgcccgt
    16021 ctatcggcat ctgaaccatt gacaggaaaa tacacttctc tgaaattagg atttttctcc
    16081 aatatcatgc ttctattggg attattttca gtcagcataa aaggccctgt acctatagga
    16141 taccagccaa aagataagtt cttatcatcc atatcttttt gggaataaaa taagtccgct
    16201 tcccaaggaa ccggagcaaa aaagggcatg gctaaccaaa acaaaaattg tgtatattgt
    16261 ccctttaatg taatctcaaa ggtataatcg tctaattttt taaccccctt caaaggatac
    16321 ttacgtaaat caataaaaga atttttattg gccaatcctt taggaagact atctccatac
    16381 tccttgaagc ccagaatata atagctcatc aatccatata tcggagaact cacagcaggg
    16441 tttgccaatc ttttaatttg ataaatgtaa tcatcaatga tcagctccct tgtaccggtg
    16501 tatttaaaat ctgataactt gccaatatca tgctcttcca aataatcttc tggtaagtga
    16561 tgatatcgat aagagccatc tttcttctga gccaaagcag gatgaggttg atataaaatt
    16621 ccttttttta tctgaatggt atagacactg tatgccggtt ttgagttatc tcctgccgga
    16681 acaggatttc cattagcatc caaatatcga atcttaggta actgggtagc cgttaagggg
    16741 attaattcat agggtctttt atagtaatca tattccagca gtggctcgta gatctgggct
    16801 atgaaaagat attcattgga agaataggaa cgtgccggat ccagagtttt tggctgttca
    16861 ttaaaagaag aataataaat attttcattg gcctcgctct ctgggtaagg attattgaat
    16921 acccaagaac tgccataagc caaattgaca cagcaaggca ttaaaaataa catgaattga
    16981 attaacaaat atcgccgcac ttacttccct cgtgccaatc agtcattatt acaggtttaa
    17041 atacctactt cacctgattc attgataccc atcataaacc aaataacaaa gatctagcta
    17101 ctcatgaatt aacccatttt aaaaactcgt cttcctctat aatcgctact cccagttctg
    17161 tcgctttaat cagctttgaa ccggcttcac ttcctgctac tacataatcc gttttggaag
    17221 acacacttcc acttactttt gctcccaagg ctaataattt tgcctttgcc tcttccctcc
    17281 ccatggtact cagagttcca gttaaaacta ctgttttacc aaaaaatgga ttttgctgat
    17341 taacctgtat tttttcgggc tttggccaat gaatacccaa ctcgagaaga cggtcaatca
    17401 cttcaagatt atgcgcttgg gcaaagaaat ggactatatg agaagccgct actggaccta
    17461 tgtcattcag agtcattaat tcctcaatcg ttgccgcttt caagctctct acatcgcagt
    17521 agtgctccgc taaaaccctt gcgccggctt caccgatttc tctgatcccc aaagcataaa
    17581 gaaagcgatt gaaagtcgtt tttttacttt tttccaaagc ggataatagg ttttttgcag
    17641 atttctcccc catccttggc aggttagcta aagtctgcaa atcgagttca taaagatccg
    17701 ccaaatgatg gacaataccc tcatcaacta actggtcaat taaaacactg ccaagtcctt
    17761 caatatacat tgcttttcga gaagcaaaat gccacatcat cctttttaat tgtgctttac
    17821 aatataaacc gccgacacaa cgagcaattg cttcatcggc ttcccttacg acttcagaac
    17881 cacaaacagg gcaattttta ggaagctcaa tcattctggc attagcggga cgcttttcca
    17941 aaatcacaga aaccacttca gggatcacgt caccggcacg gcgaataata actgtatcac
    18001 caatacgaat gtcttttcgg gtaatttcat caaaattatg caaagtcgca ttactcacag
    18061 taacaccacc aacactaact ggctccaaac gtgcaaccgg tgtcacagcg cccgttctac
    18121 ctacctggaa atccacggct atcagacgag tcatttcttc tgtagcggga aatttatggg
    18181 cacaagcaaa tcttggggca cgagaaacat aacctaattg ctgttgcaag gagatactgt
    18241 caatcttata aacaacccca tcgatttcaa atggcaattg attccgtttc gctaacatat
    18301 actggtaata atctaaacag ccttctactc caaccgccct cctcgtttct ggagacactc
    18361 taaatccaaa ctcttttaat aaattcaatt gctccaaatg actgttaggt aacttataat
    18421 cctcacaagc ccctatacca taacaataaa tagcaagtgg acgactggca gaaatttcag
    18481 gatttaattg ccttaaactg cctgcagcag catttcgcgg attagcaaaa gttttttcac
    18541 cgagctctct agcccttgcg ttgtaagctt caaaatcggc tttggggata tagacttcac
    18601 cccgcacttc gatcaatttt ggagggttac taacccttag ccttaatgga actgaagcaa
    18661 tagtcttaat atttgctgtg atgttttctc ctacagcacc atcgccacga gttgcggcat
    18721 gagtcaagat cccgccctca taagtcatgt taacagccaa cccatcaagc tttggttcgc
    18781 aagcaaatac cagttgttga tttggttcat ccagtttctc aattgctcgc ttaatgaatg
    18841 cttttaattc atcggtagta aacacattgg acaaagacaa catgggttgc ttatgggcta
    18901 ccggcataaa agcatctgaa ggagtaccgc tcactctctg tgtaggagaa tctggcgata
    18961 aaaattgcgg atattgctct tcatactgtt gcaatgcctt gaaacatcga tcatattccg
    19021 cgtcgggaac caaaggttca tctaaaacat aatagtgata atcgtatttt cttatttgct
    19081 ctttaagcgt ttctatcgat tccttaattc cttgatcatt cattaatgaa gattcccaaa
    19141 ataaaaacaa cagtttatca tttttttact tctttcaaat atgagtggtt taatcattca
    19201 aggcaaaatc ttttttttgg aagcctcttt attcggaacc aagtaatcgg cgcaaatcca
    19261 ctaaaacgca tcaatcccat ctcttgaatc ttttgccaga accatgatat agatacgtct
    19321 ctgtattgaa ggagatattt tgaaaatgga acttctgcgc attttatcca ctcttattgt
    19381 tttattgttt tcaagcctta tccattctca ttccgacact aattccaatc aaggtattgc
    19441 ttttgtccat ggtactcgag atcacagaga agatgcctat ggagggtatt ggaaaattga
    19501 tttcatacaa agtatctccc aaaccctggc aaaacctgaa aatcactacg tggttcattg
    19561 tgactttagc caatatatgt ggcatgaaga cgcagccaat tgtgttgcta atcaacttct
    19621 ggaatttatt aacgataaaa atgtgagctc tctcacagtc tacacccact ctgatggtgc
    19681 caacatcatg cgttggattc tctcaaatcc aacttatgat ggccgatata tgactctcaa
    19741 acgcaaaatc agtcaagtga ttgccattgc accttccagc ggagggactc ctcttgctga
    19801 tgaagtatta aatggcggca tatttgaaac gagtttggcc tggttactcg gttatctttc
    19861 agatgcagtc aaacagcaac gcgtaggcga catgctgatc tataacgaag agttgctatt
    19921 gggaagcaaa ggccgaccct ctctgtccat tccatttaaa gtcatagtgg gtactgatgt
    19981 ctatgcttca ccattttcaa catccagcta ttgcaatgga tacatgctaa atagcgggct
    20041 aaaaatcgcc aaactctatc ttaatcagtg tgctgatggc tttctggatt gtgagtcgca
    20101 agctcaagca ggagaagtat ggttctatga tatagacaaa actgattaca atttgccttt
    20161 aagccataat caaagtcgac attcttgttt tggtttggat caaatactta tcagtgccct
    20221 agttaatgaa ggagttgtaa aatgaaaact gcccatctta tatggatatc cgcattttgt
    20281 attgcccaag ctcatgcgtt tacattacca agacagccaa ccaaagctta tgaatgtgag
    20341 aattgcagcc aattatcacg agaaaacctg cacgataaat gggaaattac caatgaacca
    20401 ttaaacaaca acatcagtaa tgttcgtaga agttatggtt acaaagaacg tatttctctg
    20461 gaacaattac aacgcggagt tattatatca acattggctc ctggcgctgt cgttcgcatt
    20521 acccctttgc aaaataaatc catcccggaa ttacttatca aaacgccaaa aaaccaactc
    20581 ctgcccctga aagaagcctc ttctctctat aatcaggatg acgaggttgg caataatcct
    20641 ttagccatta caaaacacca ggctatgtta caaataaaac ctgaactggg gtacggaaaa
    20701 tttatactaa aaagcaagga cattactaac aaatatgccg atgcttatat gattagtgtc
    20761 cttgataaat tttccatcac ttacctggag gttgaaaccg attctctcca ttaccagtat
    20821 ggggataagc taaaagcgac catatcgctt cacaatgata tcactgagta tgacgtcaat
    20881 gacgttgatg ctcgacttgt aggccctaaa ggtcaagtca tttcgcttaa tctgaccaag
    20941 ttaaaatcca atgtatttga aggaactgcc actttggatt ctgagttaaa tgatcgcggc
    21001 gaaaactggt acttagaaac tgatgttcaa acagaatacg ggcaagaaat cattagacga
    21061 tctggccata cagccttttc atactccatt ccctcagcca gtcttatgaa tgtaaaaaaa
    21121 ttgtcctcta aacctttgac ttttgttgtc actgtagatg ttgcaactgc aagccgatac
    21181 gctttacaaa gtgtgttgtt ccaaaaaaat ggaaagggtg aagccaggcc tattcagacc
    21241 tcgcaaagag cgcagtggct tgaacccggt aagcatgttt tgcaatttac ctttgacaat
    21301 cacaatcaat tatcggacga taacctctat ctgggttatt tacgcttgat agactatggg
    21361 cagttaaaaa ctgtgtatca atacaaccaa cctgtcaagc ttagtcagtt agtggattaa
    21421 tgaatggcat tattttcttc tgtcactttg tttgagggca tagcgttggc tattgccctt
    21481 caattcttat tgcttttctg ggttttgata aaacaagcac agcaaaaaaa actgaccgaa
    21541 caacttggtg aaagaataca acaggcactt atctctcaac ttcaccagtt acatattgat
    21601 ttaagccaat catatcaaac gagccaacaa tttattaatg aaaagatagc tcaaggacaa
    21661 ctggctacac aacagctcat tagtgatgcc atacaaagac aaatggccga tgtcagagag
    21721 caaatgactc atagcttcaa acatcatgcg agctcactca cttctcactt acaattacta
    21781 actgaggaaa ttcgtaatca tttaaacaca ctaactcagc aggttaatca caaattgacc
    21841 gaaggttttg agaaaacttc gtctactttt attgacgtgg taaagcgatt gaccatcatt
    21901 gatgaggcac aaaagaaaat caccgaactc tccagtcatg ttgtcagcct tcaggacgta
    21961 ttagtggaca aaaaagctcg cggtgctttt ggtgaagttc aattatcaac actcatcagc
    22021 aatatgcttc ccagcgcaag ttatcaaatg caatataccc tcagtaatca aaaacgggct
    22081 gactgtgttt tgttcttacc cgagcccact ggaaatattg tcatagacgc caaatttccc
    22141 ctggaaactt atcaacgatt aatcaacagt gatgccttat ccactgatcg taagtcatta
    22201 caacaacaat ttcgccaaga cattcaaaag catattaagg acatcgctga aaaatatatc
    22261 gtgcccaatg aaacaacaga tggcgccatg atgtttattc ctgcagaatc tatatttgct
    22321 gagattcatg caaactatcc tgatttaatt gccatgtctc aaaagctaaa agtctggctg
    22381 gtatcgccta gcacattaat ggctgtactg actacagcaa gggcagtact taaagatgat
    22441 gcaactcgca aacaagtaca catcattcaa aaacatcttc aagccctggc caatgatttt
    22501 caacgctttg aaaagagaat ggataaatta tccaaacaca ttgacttggc acatcaggac
    22561 gttaatgaag tcaatacatc agccaaaaag atcacttcca gattccaaaa aattgaatcg
    22621 gtcgatatcg aattggatga acacgaagta actcaattag aattggtcga gtctgaatcc
    22681 atctaaaata aaatctttat ggtgcagaat acctaattta gcattatact aagcggtttt
    22741 cagttttaat cattaaattc caatgaatac aaaaacgcta ctttaccaac ccacaaaaaa
    22801 taaacaaata tgggggcaac tctatggtag cagtctggca cttgctttag ctgaatattg
    22861 ccaacaaaca cccgggatca aattacttat tacgcaagac aacctatgcg ccagtcagtt
    22921 gcaggatgaa ctacaatttt ttctaaaccc gaaccaaaat acccaggagt tattattttt
    22981 tcccgactgg gaaaccttgc cttatgatca attctctcct catcaagata ttatttcaga
    23041 aagactctac accttaagca gagttcaaca aattaccaat ggaatcatca tttcttcagc
    23101 cagcacttta atgcacaggc tttctccgcc agagttttta aatcaatacg ctttaatgct
    23161 taaagagggg caaaagcttg atctgaactc gttcaggaat cagttgcaac aagctggata
    23221 ccattgtgtt aataaagtgc ttgaacatgg tgaatacgca ctacgtggat ctattattga
    23281 cgtatatccg atgggtagtg gtttaccttt ccgtatcgag ctatttgatg atgaaattga
    23341 aagtctcaga gaatttgatc cggaaacaca acgcacaata gaaaaaatca atcaaatcca
    23401 tttgttacct gctcgtgaat ttccattaaa tgaacaaagc caattacact tccgacgagc
    23461 tttcagagag tcttttcctg gaaatcccag ccattgccca atatacgaag caattagtaa
    23521 caatcaattt ccatctggca tagaatatta tctgcccttg ttttttgata aaaccgttac
    23581 cttttttgat tatctgccag ccaatgccaa aatttgttta attgaagaaa tccaggagaa
    23641 tgctgagaga ttctggcgag aattaaatga acgctatgaa caaaggcgtc atgatgtcag
    23701 ccgccctatt ttacccccag ataattgctt tattaatccc accgagttat taactaaagc
    23761 aaaccattat gaacaagtac gcctgtatca caaaccttcc gaaaaaaaag gagccttaaa
    23821 tttcaacatt gccaaagctc cacaactacc cattgacagg aaaaatattg agccactccg
    23881 ccaattaagt gagtattgtt ctgatccaac tcgacgctat cttattgttg ttgaaagcgc
    23941 agggcgtcgc gaagtgttac tggatctgct taaatcaagc catatcattc caaaaacaca
    24001 gaactcatgg ttagacttca tttacgatga atcccccatc aatataacta ctggcccatt
    24061 gatttatggc tgtgaattaa ccgacaaaca aattgtgatc atcgttgagt cgcaattatt
    24121 tggtgagcaa agcacacctc aacgccgaag cactcaaaaa tcagttgacc ctgacttaat
    24181 catacgagat atggccgaac ttcgattggg cgctcctgtt gtacatcttc aatttggagt
    24241 aggtcgctat caaggtttgc aatacattga ctccaatggt acccccagtg agttccttgt
    24301 ccttgcttac gcaggggatg acaaaatcta tgtgccagtc acttctctgc atatgataag
    24361 ccggtatact ggtgtggaca gtgaacacgc ccctttgcat aaactgggtt ctgaacaatg
    24421 gcaaaaggaa aaaaagaaag cggccgagaa gattcatgat gttgcaattg aattattgga
    24481 tctctatgct aaaagagaag cccagccagg gcaccaatac gatttcaatc aatccgaata
    24541 tataaaattc gccagtggct tcccctttac agaaacacca gatcaacttc aagctattga
    24601 acaaattatt aaggacatgc aatcaccaag accgatggat cgcctaatct gtggtgatgt
    24661 aggatttggc aaaacagaag tcgccatgcg tgctgcattc gtagctgtac aaaatggaaa
    24721 acaagtctgt atccttgctc caactacctt gcttgcagga caacattttg agtcatttcg
    24781 cgatagattt gcagattttc ctgttaatat tgaattatta tcccgctttc gcagtaataa
    24841 agagtccgaa gcagtccttg ccgcattgca atcaggtaaa gtagatattg taattggaac
    24901 ccataaatta ttccaaaata atatttcttt caaaaacctg ggattactga ttattgatga
    24961 agaacatcga tttggagtga aacaaaagga acatattaaa tcgcttcgaa ctcatgttga
    25021 tattttatcc atgactgcta ctccaattcc cagaacattg aacatggcaa tggcaggaat
    25081 cagagatatt tcacttattg caacaccgcc tgccaagcgt ttggcaatta aaacattttg
    25141 gcaagaaaaa aatgatctca ccatacgaga agcgatattg cgtgaaatat taaggggagg
    25201 gcaggtattt tacctgcata acaatgtaca aactatagaa agagtttgcc aggatctgga
    25261 agctttagtg cccgaggcaa aaattcaaag cgcacatggg caaatgcgag aaaggcaatt
    25321 agagcgcatc atgtctgatt tttatcatca ccgatttaat gtcctggttt gcacaaccat
    25381 cattgaaaca gggatcgata ttccaaccgc caatacgatt attatcgatc gtgccgataa
    25441 atttggatta gcccagctgc atcaattacg tggtcgtgtt ggacgctctc atcatcaagc
    25501 ctacgcttac ttattaactc ccaatgaaaa actgttaacg ccagatgcag tgaaacgtct
    25561 cgaagccatt gtgtctttag aagatttggg agcaggattc accttggcaa cacacgatct
    25621 ggaaattcgt ggagcaggtg aactccttgg tgaagaacaa agtggtaata tgcatgccat
    25681 aggatttaat ttatttatgg aaatgcttga ccgtgccgtt aacgatttaa aggcaggcaa
    25741 aactcctgaa ttgtcagcac ccatgcatca aggacctgaa attgacttga gaattagcgc
    25801 gattatcccc gaagattaca taggtgatat acacaataga ctcatcatgt ataaaagaat
    25861 tgctaatgca aaaactaccc aacaacttag agaactacaa atagaactga tagaccggtt
    25921 tggtttactc ccgcaaccag tcaaacatct gtttttgatt actgaattaa agttaaaagc
    25981 ggaacagctc ggcattcaaa aaatcagtgc cagtgctcaa caaggtaaat tggattttag
    26041 tgaaaaacca tcgattgacc ctggaaccct gattagctta atacaagtac atgccaaacg
    26101 ctatcaaatg gaaggaccgc aacgtctgcg ctttacttta gacagcacgt cagcagagga
    26161 acgaatattt gaaatcagtt ctttattaaa taaactgtct cctcattccc aaacgattga
    26221 ctgagattgc tgcagtgcct tttggattaa ctcggcataa tctttttcaa ctacccttct
    26281 ctttactttc agtgtaggtg ttaatttatc attttcagtt gtccaggcat ctttcagcac
    26341 aaggatgtga ctgacttttt cgtatttaac caatttggaa ttgacttgtt ttaaggtttc
    26401 ttgcaatgag tgagtgatct cctcttttgg catacccaaa cgcacccctt cattcaaggt
    26461 aactaacaaa acgttattgg gtaactctct acctaccagg cacagttgtt ctaacatagg
    26521 gttcactgaa aacagttttt ctattggcga aggagcaatg aactctcctg tctggttttt
    26581 aaaattctca gaaagtctcc ctaatatttt aactctgtct tcattatcaa catcaacaac
    26641 atctcctgtt cgcaaccaac cctcttctgt aaaggcattt ttagttgctt gttcattttt
    26701 gtaataacct gacattagac aagggcactt cattagcaat tcattctctt cgcctacttt
    26761 tatctcaacc tccaacctcg gggtaccaac gtaaccacgt tttctctcat ttaacatcga
    26821 taaggtagca taagccaaat tctcggattg accatatcct tcctgaatat atattcccag
    26881 tttttcaaaa aaatcaataa tggatattgg cagatgagat gctccactaa aacaattagt
    26941 acactcgctt aatcctaaac tgtgaatgat ctttcttttt atcaaactgg atataagagg
    27001 aatttttaat aaaaaattca atttggctgg tggcagtttt tgttcaattt tttgcttaaa
    27061 tactccccaa atgcgtggaa ctgcagtgaa aaaggtggga ctaacttccc ttaaattctc
    27121 tgcaaacttc tccagacttt caacaaaaga taccgatgca ttaatagcaa cactgcctaa
    27181 ttggatggca gatcgctcat agacatgggc caggggaaga taagatatta atttataatg
    27241 ttccaactct ctgattctga gcaagtcttt ggggaaaact gtcaagtaat tggctatgga
    27301 ccgattggta tacatagctc ctttgggtgc ccccgaagtc ccggatgaat aaataatggt
    27361 atacaacgca tctggctctg gctccaccag gttaatcata gggtcacttt tcagaacatc
    27421 agaccattcg taatcaactt gcaaatcttt atggtaatca aaaccaattg tgcgataatt
    27481 cttagggata aattgcctga ctcgttgatg atcatctaat tttccaacga aaactagttt
    27541 cacatcccca tgatctaaaa cataatgcgc gctttcctca ttttgattgg caaataatgg
    27601 aacattgacc atgccagcaa tatgaattcc aaaatctgtg ataaaccatt ccgcgcaatt
    27661 ctttgagata atggaaatat gatcgccttt ttttaacccc agatggtgta aaaaaccagc
    27721 tacttttctg gcctgcagca tcactgacga ccaggtgtat tcatgccaaa ctccattttt
    27781 tggctgtctt aaatacacac ggtctgccga atttttttca tttttcaaca gtaagtcaaa
    27841 taatgaattg gaattggatt cttttggcat agctcttcct taagcttgtt taattactat
    27901 tctagaccaa ctagttgtaa aatattattt ttttctcgca aaacacaatt ttcaccctca
    27961 tgaatcgcct cttttgcttt atgaaaatca taaagcatga tgtttcctaa ttgaggaacc
    28021 aaagtcaaat cagcaggatc acctgccgct cttgcccggg ttatccggtc ctgcattatt
    28081 ttgatgcttc tggtcaagac atcataatat ccaggtccat cactgatacc cattattctt
    28141 tttatcattt tatcaaattg gcctgagaga actgaaaaaa accccgggtg ttctatcgtg
    28201 ctcggaggta ctcttaacaa gtcatgattt aaattgacag caattacaac ctctgctccc
    28261 atagctcgac acaatgtaat aggaacggga ttaaccaaac caccatcgac taaccagcaa
    28321 tccttataac gctgcggggt aaataaccct ggtaaagaca tggatgagcg aatagcaagc
    28381 tcaagagacc ctttacttag ccatatctca cgtccagtac tcaaatcagt agcaactgaa
    28441 ctaaaaggta gagaaagctc ttcaatattt ttttcaagac caaaatcctt gaaaaaggtc
    28501 atcaatttac taccagagag aaccccgcca cctaaaaaat tcacatcaat gagtttagcc
    28561 atttctcttt tattaagctt taacacccat tgttcaaaca gatccagggt gccacaggca
    28621 taaatggcgc caaccaatgc gcctatggaa catccagcga cacaatcaat ccttacaccc
    28681 aatcgtttga ttgattgaat taccccgata tgagcccagc cgcgcgctga tccgctacct
    28741 aaagccaaac caattttagg gtattgattt gtcaagaata actcctggaa atagttggta
    28801 aactcttgac tggcattttc ttacttggtt ccgccaaccg tcaaggcatc aattttcaaa
    28861 gtgggctgcc ctacgccaac gggaacagat tgtccttctt ttccacatac accaatccct
    28921 ctatccaatg ccaaatcatt accaatcata cttatttttt tcatcacatc agggccattg
    28981 ccaatcaaag tagctccttt caccggtttt gtaatcttgc cattttctat taaataagcc
    29041 tcactcgcag aaaatacaaa ctggccagaa gtaatatcaa cttgtccgcc tccaaaattc
    29101 accgcataca accctttttt tacagtgcga ataatttcct gagggtcata ctgccctgac
    29161 agcatataag tattggtcat tctcggcatt gggacatggg cataggattc acgacgacaa
    29221 ttacctgttg attgcattcc cattagtttg gcattcaact tgtcctgcat gtaattcact
    29281 aaaattccat tatcaattaa ggtcgtacat tgcgatggcg tcccttcgtc gtctatagtc
    29341 agagaaccac gtcgattctc taaagtacca tcgtccacaa ctgtaacgcc tgcagcagca
    29401 acctgctgac ccaatctgcc tgaaaaagca gataatccct tgcgattaaa atcaccctcc
    29461 aaaccatgtc caacggcttc atgaagaagt acccctggcc atcctgggcc caaaacaact
    29521 ggcatggttc cagcaggagc tggctcagcc ttcaaattgg ttaatgcttc ccgtaccgct
    29581 tcacgcgcat aactcaaggc gttttctttc tcggtaaaat aggaataagc tactcgtcca
    29641 ccaccacccg atctcgccga ttctcttcta ccatgactgt cttcaacaat aacactgaca
    29701 ttaatgctaa ccaatggcct cacatcagcc atcatctgcc catccatatt ggcaaccatt
    29761 actacttcat agcaaccagt taaagtggca ttaacctgta tcactcgagg atcaagacta
    29821 cgggcctctt tatcaatggc ttccaataaa gcaattttct cctgtttgct cattccttcc
    29881 aaaggattta aactttcata tcgatttaca gaggccttta ataccttgac ggccggtact
    29941 gtttttgaac cagaaagggc tatggagcgc gccgcatcgg cagcacgaag catggaaggc
    30001 agcaatatat catcacaata agcaaagccg gttttatcac cgcttacagc cctaatccct
    30061 acccccttat ccagagaaaa attgccgctt ttaacctctg aatcttccaa ataccaggat
    30121 tcataactac aactttggaa ataaagatca gcatcatcga cgttccgatt aaacatggtc
    30181 ttgaataatt tttctatgcc gacttcatcc agggaagctg gtgtcaataa aatatttttt
    30241 gctatcgcaa gagattttgt catttatata ccttttacat taaaacatga tgttcaacac
    30301 acggaaattg tcttctcaac tgtgacaatc tctctaaatc aatatcagcc agaattactc
    30361 cctgcccttc ttctttttgt gccaacactt taccccatgg ttccaccacc atactatgcc
    30421 cataagtatg acgcccgttt tcatgagtcc caccctgatt aggagctaag acataacata
    30481 aattttcgat tgctcttgct ctgagtaaga cctcccaatg cgccgctcca gttaccgcag
    30541 taaaagcaga cggaactgaa agtaattgtg cgcctctttg ggttaaatat tggtacaatt
    30601 ccggaaaacg caagtcataa cagatggtta acccaatttt ccccactggc gtatccacaa
    30661 gcgctatatc ttttcctgct tctatagtta acgattcctg gtgtttttcc tgctcggaaa
    30721 ctatgacatc aaataaatga attttatcat aacgagcaac atttaggcct ttatcatcat
    30781 aaactataca acttgctctt acctttgaac ccatactttt taacgggatt gttcctgcta
    30841 ttatccatac ccgcaaatct ctcgctaact cacttattct ttgttgtata ggtccttgac
    30901 cataatattc ggcaatctgc aacttctctc gttcattcat tcccataaaa gcaaaattct
    30961 caggtagaac aaccaaactg gcttcctgtg ccctggcttc aattaaatat tgttcagtga
    31021 gttgcaaatt atctgctatt ttggcagatg ataccatttg cacaagcgct actcgattca
    31081 tcctttttcc taaatgacat tcatattttt catcttacta tatcgttcca tataagccca
    31141 aaacaaaatt gacacaaaaa ccttttcgcc ttaataataa attgtctatt ggtctatatg
    31201 taaattttat tacaaaattt tcaagtgatg cgacttgaaa aataggaaat ttgaccatag
    31261 atatgctaca ctgataataa ataactggag ttctgaacaa tgaaccgaaa tgatatcacc
    31321 atacttagtc aacaaagaga atctgtgctc gcaaccaata aggtcctgcg aaatacgtat
    31381 ttactgctaa gtttaacctt catatttagc gcattaactg cctacgtagc ctttattagt
    31441 ggagctcgcc caatgaatcc actattaatg atagttggcg tttatggttt gatgtttcta
    31501 actcaagctt taagaaatag cgtttggggt ttggtaagcg tctttgcttt tacagggttt
    31561 ttaggatata ccattggccc attactcaac tattacatca caggcttttc aaatggccca
    31621 caaatagtcg ctactgcttt aggtggtact ggaatgatct tttttgctct atcaggatat
    31681 gccctgacaa cgaaaaaaga ttttagctac ctgggtggat ttctttttgt tggcgttatg
    31741 gttgccttat tggcgatgat agcgggaata tttatacaaa taccagcttt gcaattagta
    31801 atttctgctg cttttgtatt aatttcatct ggattgattc tattacaaac cagcgccata
    31861 attcatgaag gagaaaccaa ttacataatg gcgacaattg gtttgtttgt ttccatttat
    31921 aacttatttg ttagcctgct gaacctgtta agcgcattct caggtcgcga ctaattgaat
    31981 atcgtctcct ctacctgagt cccggctgta tgccgggatt tttttatcga tcaattgttt
    32041 aaaaggaaat gtaagagaat atttcaacat ggaggcgctg gtctggtaca aggcaattta
    32101 tctatactga gacgacctgc gccttttaat tgtcaaccct tcacggctat gtaattaagg
    32161 aatattaagt cctatgcctt tccctccttc gcgggaaaga caactcaaat aaataggctt
    32221 ataagcagaa aaattctcat accctggaca gttactaata attacattat aaaatccaga
    32281 agtatgatca atcgatgtga aattaatttt gtttccaact agccttggct ttaaaaagtt
    32341 ctggcaaatc ttccggtctt ttcttcactt cctggctcag agtaaaacgc tcacgatcct
    32401 tttgataata tactcccaaa ggtacggggt aatcagggaa cgtcaatcgc gctaaacgca
    32461 tggcgctaat taagtttttc tcatcatgct tataaagcgt tttttcatca attgaaattt
    32521 gtacaaattg ctcatcgtcc aactgcagcg ctttttcttt ttgagcgcca aatacgagtg
    32581 gctgaccgtc ttccaatatt attgtgtttt cagcccggtt atttttaact gcaaaatcat
    32641 caaaagcacc atgattaaaa atattgcaat cttggtatat ttcaacaaaa gagcaaccct
    32701 tatgttcata agctttttta agcacagaag ccaaatggac aggatcttta tcaaccgccc
    32761 tggctacaaa actggctccg gaagccaaag cgatcatgat tggattgatt ggctcacttg
    32821 tcactccttt gggggatgtt ttagttacct gccctttctg agacgttgga gaaaattgcc
    32881 ccttggttaa tccgtaaact tgattattaa acagaagtat attaacattg acattacgcc
    32941 ttaaaatatg cagcaagtga ttgccgccta tacttaacgc atccccatct ccggtgataa
    33001 cccagacaca taaatcttct cgcattgcct ttaaaccagt tgctactgct gtagccctgc
    33061 catggatagt atgaaatcca taagtgttca tataataagg aagccgtcca gcacacccta
    33121 tgcctgagac aaaaacatgt tgctcaggag gcaaacctaa ctcaggaagt actctttgca
    33181 aagcagccaa aatggcataa tcaccacatc caggacacca gcgaacttct gtttcattca
    33241 caaaatcttc acgcttataa ttgctgttca tagttagctt ccgctttaat ggcacttacc
    33301 aaaggattaa cactgaaagg ttgaccattg cattggctaa tcgattgcgc atccaccaga
    33361 taaactgctc tgatgagttg acataattgg ccagaattta attcagcaac caataccttg
    33421 tcatattttt tcaacaaaga gcccaaatca tcaggtaatg ggttaagatg gcgcagatgc
    33481 agataggcaa ccggtaatcc ctgttcaaga cattgttgta cagcagactt taaactacca
    33541 aaagtactac cccaacctat aacaagcgtg ggagccgtca tatcaccctc aagaaccaaa
    33601 gcaggataat ctcttgcaat accctttatt ttctcggcgc gtgtaatcac cattttttga
    33661 tgattctcag catcgtaact aactcgtcct tcatcgcctt gcttttccaa gcctccaatt
    33721 tgatgaataa acccggaagt tccaggaaca ttccagcttc tacttaaaaa ttcatctcga
    33781 tgatagggtt tggtaaaacg attaaactcc ggttttggta tattgagaga atccaaagca
    33841 ggaatttccc agggctctgc cgcgttcgcc aaataagcat cgagtaatac aataactgga
    33901 gtcatgtact tgatggctat cctgaaggct tcaataattg tattaaaaca atcagcaggg
    33961 gattgagctg caatcacagg taaaggtgcc tcgccatggc gaccatacaa agcttgcttt
    34021 aaatcactct ggctggtttt tgtgggcaaa cctgttgaag cccccgctct ttgcacatca
    34081 actagcacca agggcagctc cgtcacaaca gccaagccca ggctttcaca ttttaaatca
    34141 agtccaggcc ctgaagtaca ggtcagagct aaacgaccac cataagcagc ccctatacaa
    34201 gaacaaatag cggcaatttc atcctcggct tgtattaact gtacgccgta atcagataag
    34261 cgagcacatt catgcaaaat agcagaagcc ggtgtaattg ggtaacctga caccagcagt
    34321 ggaacttgtg tctgagtagc taatgtagcc agagctaacc ctactgcctc aactccagtg
    34381 atttgcctgt actcacctga atgcctgttg acttccccca gcatgtaatc ccgacgggaa
    34441 agctccagag tcatagcata attatatcct gccaacaaag ccaattcatt ggcttttgct
    34501 atggcctgat ttgttttaaa ctttttagcg ataaaagcct ggcaagtttc tgtaggcaaa
    34561 tcaaacaacc acaaaaccaa tcccaaaata taaaaattct tggttttgac agcctgtggt
    34621 tttgtaaggt taatggattc aactgcctga atagtttgtg taattaatgg gaaagcaaca
    34681 atgtgataat gttctcgaca attatccagg aaactcttat cgatacctgc tttttgccaa
    34741 tctctttctt gaaaactgtc ttcattaatg atcaataaac caccttgatt caaatgttga
    34801 agtgagtttt ttaatgcagc tggatttaaa gccactaaaa catccaatga ctctccggca
    34861 gtaaaaatag ccctttccgc cattgccaac tgaaatcctg agacacccgc aactgttcca
    34921 gcaggagccc ggatttctgc cgggaaatca ggcatagtac gcacatcacg tcctgtcaat
    34981 gccgcgctaa tggttaattg ttcacctacc aattgtactc cgtcaccaga atcgccagtg
    35041 atacgtacaa caatgacatc agtcgttgac ataaagtctc gcttcctgca ttaattggcg
    35101 catgtgtctt actgcctctt ttaatccaca gaataatgct ctggcaataa tggcatgtcc
    35161 tatgttaagt tcatttaact ccctaatcgc tgcaatcggt ttaacattat gatagtgcaa
    35221 cccatgaccg gcattcacta ccaagtttaa actggcagca aattcagctg cctctttaat
    35281 tcgttgcaat tcataatgct gcttttcctc tgaggtggca tcagcataac acccagtgtg
    35341 caattcgata actggcgccc caacatcaac cgcagctctt atttgctctt tatccgggtc
    35401 aataaataaa gaaacctcac ttcccattaa ttgtaagcga cgtactgcct tttccaccac
    35461 atttcggtga gtcaaaatat ccaatccacc ttctgtagtt agttcttccc gcttttcagg
    35521 cactaagcaa gcatgctccg gcgatatttc ctcggcaaaa tcaagcatgg cttcagtaac
    35581 cgccagctca agattcatac gtgtttgcag aacctgttta atcaatctga catcacgcgc
    35641 ctgaatatgt cgtaagtcct ctctcatatg caaagtaatt ccatctgccc ctgcttcttc
    35701 agcatccatt gctgcctgga caggatcagg ataacgagtt cctcgtgctt gtcttatggt
    35761 tgctatatga tcaatattaa cacctaacaa taactcttta ttcattttgc accaaaaaat
    35821 ataaaatgca gagtataatg cagttcttga caaactgcta ttcacgttac cttatttcaa
    35881 tcagtttaaa cggcactacc taaagcattt aaccatactt tactttattc actaccactt
    35941 taaagaaatt ataatattga agtcaaactg atgcctgaat aataggcact gataacattt
    36001 ccctgaatca tcataaactg aacaaaaaac ttgatatgat tttcttgttc aagtaaaata
    36061 ttaaacaatt ttaattataa ttgaacatgg tgtttggtgt taacattatc ggatttggaa
    36121 aaaggctatg ataaaaatct taatcaactc tcattatcct ttttaaatct tagagataat
    36181 gacataccac tgctatgtga gtttcttcaa aatcatcctg ccataaccag tcttgacctg
    36241 tcacataatg atattacagc caatggtgtg aagctttttg ttaataaaac atcggtttca
    36301 tcccttaaca ttagccataa taatattggt ccggagggtg ctcaatggct atcagaagat
    36361 aaccacatta ctactttaga tgtcagtttt aacgagattg gtgacgaggg agttaaagct
    36421 ctagccgcta acgccaaact gataaccctt tatgcacttt ataataagat aaccaaagta
    36481 ggagcaggct atcttgctca atccaatctt aagaaaatcg atctctgctt caatagtctg
    36541 gaagatgagg gggttatagc attagcaagt aatatcaata taaaagagct gattgcaagc
    36601 gcttgtgatg tctctgatat tggagctatt gaattagcta aaaacaatca actgacttta
    36661 cttattttgg gaaaaaacgc gataaccgat aaatcaacac tccattttgc taataacacg
    36721 tctttgagta cccttcatct gggtagtaat caaattacag cagcaggtaa aaaaatactt
    36781 gaaaccaata ccaggataac ggacctcgat ttaatcggca atccaattga agtgcatgaa
    36841 acagatgaac taaattattc taaaaaatcg ccagactccc atagtgtatt taagtttttg
    36901 caaaaattta cttttctcag ttgtatgtca ccttgtcaag aaaccgcaga aagcgataaa
    36961 ggcttaaata aaaaaccgaa ttaattatga aatcacaatt atcataatca agattcagta
    37021 aaaataacaa cccaagaggt aactttttta ttcatatcca taaaaagaaa agcactatat
    37081 ttttaaagaa atcatggtta agaaataacc gccacaataa actcaaatca gttatcggag
    37141 taatttatgg ctattgcccc ccaacagata caagagagac tgaagcaaga acaatatcaa
    37201 aaatttgttg ttgctgatat tgggaatttt ccacattgcc ttgctcagac tcctgaaggc
    37261 atagctagcg gacaaagata ccaaaaatac agtacaaact ccttatccag aacaccacct
    37321 tttagtcaat ggggagctcc ccagctctta acccctaaat cggctcagga atatattaaa
    37381 tttgctcagc aaagaaataa aaaatcaagt tttaaaattg atggcgaggc agttcgtgtc
    37441 tctgaatgca gcaattttgc ttaccactct gcaggagtat tgttagatga tccacaaata
    37501 agaactcagt atgatgttgc cgttatagga agtatgcata gtaacggccg gtatttacat
    37561 aatattacct tactcgttcc taaaggaagc agactccctc aacccccaca gcaattaacc
    37621 gctgaagttt ttccaattgg tacgctaatc gttgatccct gggccgttgg catgggacac
    37681 cctcctgaac aagcattggc gattcccaaa gaacaatttg cttataatcg cagccttttt
    37741 cccgccacag tgaattatca gtcagctctt gacgagagtc ttacttcaac cagaacaggc
    37801 cagctcactc cctatactgg tacaccttca cgaactggaa gacaagaagt acgcgcagaa
    37861 agccagttcc ctggtacaag aaggcctgtt tctgcaacga tccccggaaa ttttgctgca
    37921 tatcatgaat tatggcgaaa tgcttttcaa gaaattatga atgatcctcg ccatcagctc
    37981 cacagaaatg atgtagaata caaaaagata catgccatta gaactgttct tgatgattat
    38041 actaaaggag gcaacacctg gtgggccaaa ttcagacgaa ttttcacttt tcattggaat
    38101 agacaccatg tcaaagtagt tgatgacatt gtcaaggaaa ttgatgctgg taattacact
    38161 acctcacgtg ctttggttga tagattagat aatcttgcta tttcattggg aagtaaactc
    38221 aatcctaaag gtactttaaa agagcaaatt ggttttatta aaattcagga gcaaaatcct
    38281 gtggaagaaa tcgaaaatct atccagacct aacctcacat aatagaccct agacctgatt
    38341 tgatagcatc gaagcacttg gcgatcatac cactatctca ggccggtcca tacaaggacc
    38401 gagccttgat ttcccgtcca cccaaaagat gattgattgc ctgacgcata atgaatttcg
    38461 ctgattttaa ataagcggac tcacttaaat tatctgctgc tatagcaagt aaatgctcac
    38521 caggtatttc tttatcacca cctaaaataa aaccctcccc agctacaaat tggtaataag
    38581 aatcgggaac aattaactct cccgttcgcg cctcatgaag aaatgaaaac gtgtatccac
    38641 aagccttaag caaagcccat tcaaaacgac gcagcaaagc ttctatcgcc tctctttctc
    38701 tagctaatgc tatgccattt aaggtgaaca agtaagcatc aaataaatcc gggtcgggga
    38761 aatccgggct cagcgtataa tagagtaact cattgatgta caggcctgaa aaaagagaat
    38821 gtccctcaag atccagtctg gatgaagtgc tttcaatgtt tcgtgtgtaa tattgatcat
    38881 aacgctcttc gatactaacc cacagaggaa taaaagcttg aagtaatgac tgtttcttgg
    38941 gagttcgccc tcccttgcac aagcaattaa ttaatcccag ttccctagta aaaagcttta
    39001 gtctggcact ggtatctcca gaccattgct tatgaattac ccaagcattc agcgatttac
    39061 tggtcatatc ccaattgctt cagtattcgc tcatcatcag accagcctga ctttacttta
    39121 caccaacact gtaaaaaaac ctttttatct agcatttttt ccatgtccaa acgggcatta
    39181 gttgccattt cttttaattt ttggccttta tcaccaatga tcatgcgctt gtgattatcc
    39241 ttatctacta aaatcaaggc atgaatacga attaaattgc cctcatcctt aaatgattca
    39301 atatctactg ttacagaata aggcaattct tgtccacaaa agcggaaaat tttttcacgg
    39361 agcaattcgg cacataaaaa ttttgtagac cgatcggtga attgatcatc aggaaacaaa
    39421 tgaggtccct ctggcagata attctttaat ttgccttcca gctcatccac ctgcaaacca
    39481 gttttcgccg acaaaggaat aatggctgca aattgatatc gctgacttat ttgctctatc
    39541 cagggcaaaa gttgtgtttt atcagttatc ttgtcaactt tgttaactac caggatgcaa
    39601 ggaactttag cttgtttgat taaattcaac acatactcat cttcgtcttt ccaatgcgtt
    39661 ccatcaacta gaaaggcaat cacatccacg tcacgtagta cactaatcgc agttttattc
    39721 atcatgcgat taattgcttt cgcattaccc tgatgaatac caggagtatc tacataaaca
    39781 aactgaaatt caccttctgt gcgaattcct aaaatactat ggcgcgtggt ttgtggtttt
    39841 ctcgaggtaa tacttaattt ttgctgtaaa atacgattca ataaggttga tttgccaaca
    39901 tttggcctgc caactaaagc aatataacca caataactac tcattaatct tgattcctgt
    39961 ttatttttaa aacattctaa cagccatgtc ataaaacttc cagagatacc aaatttttca
    40021 ttaaataggc ttgctatttc tgttccaatt cgagtaccct gtgcattaat ggcattaaat
    40081 taaacgattt tgtattattt tagcttaaat gggctttact tttcttcaaa accaacttaa
    40141 gcgataaaaa a
//
LOCUS       DACVWI010000008        39017 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.008, whole genome shotgun sequence.
ACCESSION   DACVWI010000008 DACVWI010000000
VERSION     DACVWI010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 39017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39017
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.008"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            82..528
                     /locus_tag="JBH85_01415"
     CDS             82..528
                     /locus_tag="JBH85_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014840880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HAU0944845.1"
                     /translation="MKHNLLDKAYKHCVNHGYRFTEPRERVLKILVDERKPLGAYDIL
                     QRLSMEVDNPKPPTVYRAIQFWHQEGFIHCIDSLKSYVACLHGHHVGQAQFLICNQCD
                     FVKELECVVDFTAVTEAANSIQFSIINCTVEIKGLCSDCNLTNLKN"
     gene            complement(645..2237)
                     /locus_tag="JBH85_01420"
     CDS             complement(645..2237)
                     /locus_tag="JBH85_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HAU0944846.1"
                     /translation="MKKTGSDVLKEFITTFEINYIFGNPGTTELKFLEAIEQCDNATY
                     FLTLQESSTVGIAAGYAMITRKPALINLHNYVGLANAVCNMYNAFTSGIPLLIIAGQH
                     ARPYLIHSPVMSGDLTSLAHTAVKYAYEVNSASDLAVALQRGYAQAILPGPGPVFLSI
                     PMDIWQEETQETTIKKTKFLHACINAEIEQICEVLTNTPKGKLAFIADYEVGASNSIR
                     LLHTIADRLNADIYAAPYHVREVINPLSVNYKGRLSDKSGEVHNLLLQYETVVLLGEK
                     VKGYLYTGQSSIPQGIRFIQISAASEHLAFDYPCDLAILGNLEATLTAISKHLKINGL
                     NVPLKPATNIKNLEKKYKQHPLHSLIVTLLNQVNRSVHLITEGSSEDAIVQDIATTLG
                     FLNVNFSPRGGGLGWAMPLAIGISLATRHHSICFVGDGGSMYAIHSIWSAAKYKIPVI
                     FICFVNREYRVLKTDMSQNRSFTEEDFFRLDLNHPPIDVQQIALSFGAQVKTIKSKEE
                     VETVLKSSFAFQGPTFITLYHQ"
     gene            complement(2536..7023)
                     /gene="sidE"
                     /locus_tag="JBH85_01425"
     CDS             complement(2536..7023)
                     /gene="sidE"
                     /locus_tag="JBH85_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T4SS effector NAD-dependent ubiquitin ligase
                     SidE"
                     /protein_id="HAU0944847.1"
                     /translation="MPKYVEGIELTQEGMHAIFERMGHPNITSGTIYNGEPTIDKGAL
                     DRQGFMPVLTGVSPRQDSGHWIMLIKGQGNQYFLFDPLGESSGKYYQNILAKKLPGAT
                     LSVIPNNAGLNMGLCGYWVASVGLRAHAALTQPIPPSLRNLGQTITQEMRDELTQDGS
                     EKITQWLRAVGNEFPDGDIQPDATALRRATEKNVRIDEFQPVLTGTSPKEISINPTAP
                     QEVSVPTWNGFSLYTDETVRNAARYAYDNYLGKPYTGTVEATPVNFGGQMVYRQHHGL
                     AHTLRTMAYAEIIVEEARKAKLRGESLKTFADGRTLADVTPEELRKIMIAQAFFVTGR
                     DDEESSKNYEKYHEQSRDAFLKYVEENKSTLIPDVFKDEKDVKFYADVIEDKDHKWAD
                     SPAHVLVNQGHMVDLVRVKQPPESYLEYYFSQLQPWIGSTATEAVFATQRQFFHATYE
                     AVAGFDSENKEPHLVVDGLGRYVIGQDGNPIREESDDEDEEESGELKFFSQKKKLEEN
                     QRYMRVDEYLKLDEVQKRFPGAGKKLDGGLPGLKEYQYLQRLNSINRARCENDVDFCL
                     GQLQTAHHQTKITPIKRAFQSSSEKARRQPNMDEIAAARIVQQIMANPDCIHDDHVFL
                     NGQKLEEKFFRDLLAKCDMAIVGSLLNDTDIRNIDTLMQHERNTEFHSTDAKAKPVKL
                     GETWEKTIRSGGGVTQIKHDLIFLMQNDAWYHTRVNAIAQNRDKDSTFKEVLITALMT
                     PLTNKSLMDTSRSPAPKTLFRGLDLSEEFKNKLINQAETIIANTTEHLFTDLSTEAFK
                     QIKLNDFSQVSARTCASTSTNIEVPRTIFGSNTIFEILDPDGLLHPKQVGTHVSGSES
                     EYSIYLPEDVALVPIKVSFDGKTGKGKDRHIFTLVAVKSPDFTPRHESGYAVGPLLKM
                     QTPKLEEIQRLVEQAREEPDLERVFNLQSRVARQAKFSTESGYKTFLNEKVAPVLEQS
                     LNGLLDNNVTILGKVLSAFPSDGQWSAFNSVEARQMKIQMDAIKQMVEKKAVLEGQIL
                     PALAQCQNALEKQNIAGALQALRNIPSEKEMQTMLSISGGLRGQIQRAKQDLTETLEP
                     LQRAITAKLVSDQEKVKVRYEKLIAGIPQQIADLEKAELADLAKVKKVVSRFNHLQEE
                     LKLLRNEKIRMHTGSEKVDFSDIAQLEAQLQKIHTKLYDAYLVELTKEISALVKEKPK
                     NLADVKRMVSNFYAMSADIEQLRQEKIKEHGESKDPIDMSDIDKLKEELQKINQFLVK
                     AMGTNIRVSLNQMEVKTFDAQEKEAQQNLKQLDALINKLESSDAVQKQKEELEKLNQL
                     LVEKRKAYPAMVQLQFRSEALIIHLRELCEAHQAQMAKTRNVRAQEITNGRWKVQWLT
                     DWVGLTTDERVTLANKEKELAKFKEDLNNDEYDLQELISNLAEKNPSELEEAIGISKE
                     SAQKLHKLLTHLNHSTTFMSKIEQRLQSIDELLNEFGKQAPRTEMIKTVEEKQGTLLR
                     L"
     gene            complement(7443..7946)
                     /locus_tag="JBH85_01430"
     CDS             complement(7443..7946)
                     /locus_tag="JBH85_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944848.1"
                     /translation="MKKAFRIMATYYGQCACGKIQFMCTGEPVFTQYCHCNKCREIAS
                     LSQKKQDKSGYSLTAAYLTRDFRILSEDNDFEEIIKEKAKLFLCSYCHSLVYGIALDP
                     AQQDSIGINVNNFSFDTSIPDSFKPVRHIWYASRIMDCDDQLPKFKDAPKEQFGSGEL
                     FELPDAN"
     gene            complement(8019..9998)
                     /locus_tag="JBH85_01435"
     CDS             complement(8019..9998)
                     /locus_tag="JBH85_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944849.1"
                     /translation="MRYTNIELLKRIPQHLKGVMEYYPDVLLFQLNQIQYTHLWHELS
                     SAKYLYTNGFVIKPTHWLMYAFQTVKGWLGFDNHCQPEKISYVLDKLSYYGYTKQFLQ
                     PDFSSITNYSISPEISALVVKSRDDLTTAQLQNKLVNNYFKVEPHLGIDYSYQKLNPN
                     HRFGESWMHAHEWGLIPQLDPQDDSLIAEVISTLDKKGISAKDVFFLQHSKYAKAAAQ
                     YYCDKAKNTIVPSFFFRLLWTDPRPRYLALALAYDPQIAKRDAQKFIEYHLAQKEYDN
                     AFNLLGILNDSNLVLKFLLAIPETERHALIQKDTAIAAIMAKYYIEKKQYLLATQFYT
                     NIEEISPNAAFAIEIQEQNYEKAYDIFKKYNSPNLFSMPERKLLAKIFYSDAETAYVA
                     GKTYRGNKNWEKAKQYYLQSLEQKKAAHHLDPADEYLEDLYAHKRLYALLLIDADIDL
                     NKAEDSDIASIQKAITLLRECRSSNKEEQEHHTRALAAGLMRRVDTLREKIAFNYYSS
                     DFESIRKHKIEHQQDIAILIKTLEELIALLEGTQDKALRLQLGKAHYLLADVQCFFDI
                     NAPDINQHYKMAMKAVPGNPFYVLRVAELFEEEKSKLQKIGITQLKNMGYQVFDFLHW
                     SEERWCKRDDIIHNIKDIHMPPSEPINSSSWNFTF"
     gene            10279..11073
                     /locus_tag="JBH85_01440"
     CDS             10279..11073
                     /locus_tag="JBH85_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAU0944850.1"
                     /translation="MATLKINGVDIYYELYGQGKPLVLIAGYCCDHTFWNAMLHELAE
                     QFQVLIFDNRGIGQTRDNGASFTLEAQADDIMAFLEQLGFSNPSILGQSMGGAIAQLL
                     ARKYGKKINKLIILNSVAKFNTRANQAMESLLNLRKENIPFDLLIEAGIPWFFSSEYL
                     AEPKNIAAFKENLKNNPYPQSLQDQARQFRTIPPFDSRGWLHEIKVPTLVIAAEDDIL
                     TLPAESQQLAQGIPNAQFITIPGGHSSPLEQAMIVNEVILKFLTSS"
     gene            11090..12556
                     /locus_tag="JBH85_01445"
     CDS             11090..12556
                     /locus_tag="JBH85_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HAU0944851.1"
                     /translation="MEIYKMYIDGKFTLAKSGATRDIFDPANGDLIAKVPESAKEDAI
                     LAIKAARKAFDEGEWRKSLALDRGKLLFKLADLIRANAKMLAELETRNCGKPLLEAEF
                     DVTDAANCFEFYGGLATKIHGETMSVPANSFSYVVREPIGVCGQIIPWNFPLLMAAWK
                     LAPALAAGNTVVLKPSELTPITALELFKLIDECGFPAGVVNLITGPGIGVGEELASNA
                     MVDKVAFTGGSATGRKIMQAATGNLKKISLELGGKNPNIVFADSDLEMAIDGALFGAF
                     ANQGEVCSAGSRLLVERSIHKKIVEGMLKKIPNIKLGHGLDAGVKMGPLVSSAHREKV
                     ESYVKLGMEEGAKLLCGGKRPTGNEFAKGHFFEPTIFDEVKSTMRIAREEIFGPVLVV
                     IPFDTEEEAIRIANDTDYGLSGAVWTKSVTRAHRVTSQIRAGILWVNHYHPTYNEMPW
                     GGYKQSGAGRELGLYGIESYLEVKQVNINLDETPIGWY"
     gene            12531..13883
                     /gene="gabT"
                     /locus_tag="JBH85_01450"
     CDS             12531..13883
                     /gene="gabT"
                     /locus_tag="JBH85_01450"
                     /EC_number="2.6.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HAU0944852.1"
                     /translation="MKHQLVGTKLMKKIHIKTPIPGPKSQQLMELRRQHVARGPFHAT
                     PIFVKQAKGSFVEDVDGNVFLDFSSGFGVVNTGHCPDSVVNAIKLQAEKFIHTGFNII
                     PYESYIKVCEKLNDHTPGHFEKKSLLLNSGAEAVENAIKIARAYTGKQAVICFDHAFH
                     GRTYMAMTLTSKNKPYKHGFGPFPSEIHRAPFPYEYRWKGANCVEECFDEFTDLANFR
                     VGVENIAAVIIEPVLGEGGFIQSPALFLQKLREFCTTNDIVFIADEIQSGFGRTGNLF
                     AMNTLGVPPDLTISAKGLGGGVVLAGVTGKAEIMDAAMEGGLGGTFGGNPLSCAAALE
                     VFHIFEEGSLLQNVTHLAKALQSRLSGFKEKYKVVGDVRGLGVMQAIELVKDKNTKEP
                     NKEATVQLAQFCLEHGLIILTCGTYGNVIRLHMPLSTGVKDLELGLSIIEEGLKKLSV
                     "
     gene            13967..14746
                     /gene="ceg8"
                     /locus_tag="JBH85_01455"
     CDS             13967..14746
                     /gene="ceg8"
                     /locus_tag="JBH85_01455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg8"
                     /protein_id="HAU0944853.1"
                     /translation="MNDIMWYQNIMRNLLEKLPEASRKDGEFFLDKLFLAVKRVDNKP
                     EMEFFLGLIEKSFLKFENEKSGSVTLVKFSRYILGLTLLYIKSGNDGAIWNSDFIPYL
                     GEIKKFFDVEKEGKSFYKFLNQLEVDVFVSLNHQLAIDFKHFTSILRGNNDLKTIQSF
                     TEACKGLGNESSEGFNQVVKDAEAHMINLQFADDLNSDFNLEGIDENLRNTTLQKSSH
                     ANSMPMSVNKGHRLSIFKALATSGELSDQTSLFINQNNGPI"
     gene            15006..15938
                     /gene="glsA"
                     /locus_tag="JBH85_01460"
     CDS             15006..15938
                     /gene="glsA"
                     /locus_tag="JBH85_01460"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HAU0944854.1"
                     /translation="MSSKLLTIQLLEELVHAAELNQEGKTADYIPELANVNQELTAIA
                     VQALGEKTLAYSNNPLHPVTLQSTGKMIPLIGLLEEFGADQLFEWVKVEPSGDDFASI
                     TRLEQFGPKPSNPMLNAGAIALCSRIPGIGEQQFRWLEHWVQKLFNQRLSINPLVFAS
                     EKRTGNRNRALAYLLKSRNNLGADVHETLDLYFALCSYEAMLDQMLYLPTLLANRGKD
                     PDTGEQILSTETCKITLAIMATCGLYDETGTHMVKTGMPAKSGVSGYTIAVVPGKAGI
                     VVLSPRVNAKGNSIRGEIMLEGLSKAMNWHFALP"
     gene            16062..16949
                     /locus_tag="JBH85_01465"
     CDS             16062..16949
                     /locus_tag="JBH85_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-3-phosphoglycerate dehydrogenase"
                     /protein_id="HAU0944855.1"
                     /translation="MKIAVVEPIGIAMQEIRSELPGHTIIECDSRQWSDEQLIDFVKD
                     ADIIALTNRRLSAAVINSALRLQLIAVAFAGIDHIDRDAVSKRNIPVKNAAGYANTAV
                     SELVFGLMISLARHIPDNNQRIREQGITNTGIELKNKVLGIVGYGAIGAEVARLAKAF
                     QMTTIIYDRKSQVTLDDLFSQSDFVTLHVPLTNETKGMVNLRLLSQMKKSAYLINCAR
                     GPIVVNSDLKKALEQDMIAGAALDVFDVEPPLPANYSLWEVPNLIATPHIGFNTREAL
                     VAKGQLTIRNIKEFLSSRL"
     gene            complement(17162..17761)
                     /locus_tag="JBH85_01470"
     CDS             complement(17162..17761)
                     /locus_tag="JBH85_01470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short chain dehydrogenase"
                     /protein_id="HAU0944856.1"
                     /translation="MKIVVIGATGIIGKAIVAELNPRHEIISASYKNSDIQVDITSKQ
                     SIDAMYKKLNTIDAIVLATGKVHFAALKDMGEDDYKIGLTNKLMGQVNVVLAGLEYIN
                     DNGSFTLTSGILNRDPILYGSSAAMVNGALDGFIKSAALEMPRGIRINGVSPTVITEA
                     MENYGPYFRGYEPVSAARAALAYSKSIEGAQTGQVYCVG"
     gene            complement(17967..19361)
                     /locus_tag="JBH85_01475"
     CDS             complement(17967..19361)
                     /locus_tag="JBH85_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercuric reductase"
                     /protein_id="HAU0944857.1"
                     /translation="MVLEFDTIILGGGKGGKTLAMDLAKSGQKIAMVENNQIGGTCIN
                     VACIPTKTLVQSAKVAHYCRKAKDYGLNTTLHPIDFKAIRARKDAVVKGMREANLKQF
                     LDSGMDLMLGHGHFIGPKMIEVTLSSPRDKQKTLHITADKIIINTGALPFIPPIAGLD
                     KVNYFTNDSLMNTDLVPQHLLIIGGGYIGLEFAQMFRRFGAEVTVIEASSEFLGREDK
                     DIAEQVFQTLSNEGIQFAVDTKINAIRQEQTEVIIEANRQGQSEIIRGTAVLVAVGRI
                     ANTAGLHLDKTGVELDERGFIKVNEFLETTAAGIWALGDVKGGAQFTHLSLDDYRLVK
                     HNLQNPQKKLSSQNRLIPYTVFLDPELARIGLTEAQARSQGRRIKIATIPAAAIPRAK
                     TQGETTGILKAVIDAETDLILGVSIFCAEAGEILGVIQLAMELRVPYQKLRDMMFAHP
                     TLVEGINLWFAQII"
     gene            complement(19413..22793)
                     /locus_tag="JBH85_01480"
     CDS             complement(19413..22793)
                     /locus_tag="JBH85_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase"
                     /protein_id="HAU0944858.1"
                     /translation="MHGILRMMTNSWKDKLQKQLTQQFGSPKGKQLIDKYTETMSMSY
                     SEQHTPEEAIQDILQIEKLSKENPLVIDFYENTHSQYPLHIKLYRYETPIPLSDILPM
                     LENMGLRTYTERPYKIKTRDGQLFWISDFNVTYSQTDSINITQVKDIFAEALISINLG
                     ICENDGFNKLVLCAGLSWQEITILRAYAKYLHQIGIRYSQSYIEKTIEMHAAIARELI
                     HFFYLKFGLKRKSAIHKDILALEQKIQINIDAISSLDEDRIMRYFWSLMKATLRTNYF
                     QKNHAGLSKDYLSFKLKSSEIPDLPPGQPLYEIFVYSTRFEGIHLRSTKVARGGIRWS
                     DRPEDFRTEILGLMKAQKVKNAVIVPSGAKGGFVLKKPLHAASREQIQQEVISCYKSF
                     INGLLDLTDNLINDKTIPPQNVICYDDPDPYLVVAADKGTATFSDIANSIAKEHGFWL
                     GDAFASGGSAGYDHKKMGITARGAWESVKRHFRELDINIQQQDFTVVGIGDMSGDVFG
                     NGMLYSKHIRLLAAFDHRHIFLDPNPDPVKSYEERLRLFNLPTSSWEDYNLQLISKGG
                     GVYKRSSKSIPISPQVKKALAIDANALTPNELIRALLKAPVDLLFNGGIGTYVKATTE
                     SHADVGDKTNEFCRINGAELHCKVVGEGGNLGFTQLGRVEFALKGGLINTDAIDNSAG
                     VNCSDHEVNIKILLDKEIREKKLTEKKRNQLLSRMTDEVADLVLQDNYNQALILSISA
                     AHSSHYSGLYQDYMKELEKWVNLDRSVEFLPDDKKLLERKSTGAGLTRPELAVLMAHT
                     KIHIANELLKSHLPDDSYFTTFLETGFPISLRKPYAKALPKHPLSREIIATQLSNKLV
                     NNMGITFMYRMLMETGMSIADIACAYTISACIFQTDVLQNLIDSFQDKISLSTQYELL
                     HHIRQLLNLATRWFLHNNRLTGGIEKNIKNYGKSVKKLELLIPKLMGGVTKEYLEKLI
                     SQFVSIGIEKDMAQKIAITRALYTSLNIIEVATQNEFDLSLTAETYFKVGSQFNLVWF
                     RDQIANDSREGHWNTMARLSLRDELDNLQRRLTIAILTTNTKERTSEKLINYWLEQNH
                     PIQKRWEKLLEMLLGSENIDYTIFFIALRELSSLIQVL"
     gene            22973..23698
                     /gene="ceg9"
                     /locus_tag="JBH85_01485"
     CDS             22973..23698
                     /gene="ceg9"
                     /locus_tag="JBH85_01485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg9"
                     /protein_id="HAU0944859.1"
                     /translation="MYKNILFFSNFSRMRWNEYDGDRYQSLWEHNKRDIKHTFFGTIA
                     NGKDLREVLFQPVTASFSMLVAGAFAQLLVPYSIFMLCMGEAGFAGRTLINYLEITTV
                     ALAMPFIALLSTVGRCIATVKCLVEDQYNLAEMVEDKEVKPNKIYLDCAEVNYTFRDE
                     NNNQFSRKYYKFQYKMRGLNDELCQGSFTFRDLERAPDNDDFNGKLSSLTLYKYDILD
                     LIKRVHKDKFEEMEDENLIRMSI"
     gene            23930..24883
                     /locus_tag="JBH85_01490"
     CDS             23930..24883
                     /locus_tag="JBH85_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944860.1"
                     /translation="MRVFYGLLGFMIFNLVACEKMALLTTPPKKQQLSNSPLAARAER
                     YFWRTLHEGRYQDIPQADYLLMAAYLENPYDSKLAAHLGFIHIWKITERERVKNNSPL
                     LPNEIILSKKYFADALQLDPENPIYQGFYGDTQLVEGQIFKDKQEEVRGYFTLQKAIS
                     NWPEFNYFTAGYPMSSLSADSDHFKKGLDWQWKTLDICAGEKISRQNPDFTPYMKRET
                     TIGAQRACWNSEIAPHNFEGFFMNMGDMLVKSGDPETGIKIYNNAKLTKNYNKWPYKD
                     MLEKRILNAKANVQHFNQKSNDPNQSIMFNSGYGCVVCHQR"
     gene            25043..25384
                     /gene="arsC"
                     /locus_tag="JBH85_01495"
     CDS             25043..25384
                     /gene="arsC"
                     /locus_tag="JBH85_01495"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094302.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HAU0944861.1"
                     /translation="MEKITIYHNPRCSKSRQALEILQNKGFEPIIIEYLKTPLDLEQL
                     KRLRTHLALEDLVRTNENVFKELGLSLANEAQILEAMVNEPILMQRPIVTFKGKAVIG
                     RPPEKVLELFD"
     gene            complement(25471..26625)
                     /locus_tag="JBH85_01500"
     CDS             complement(25471..26625)
                     /locus_tag="JBH85_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HAU0944862.1"
                     /translation="MMFGFLNMTLWGYLLAGFVLTHITTTAVTIYLHRYQTHRALTLH
                     PLVSHFFRFWLWLTTGMTTAEWVAIHRKHHANTDMEGDPHSPQVFTLKKVFWQVPELY
                     REASKDKDMIKKYSSGTPNDWIERKLYSPHANKGIFLMLTLNLFLFGIPGLTLWAIQM
                     MWIPLVAGVVNGIGHYWGYRNHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSI
                     KWWEFDLGWFYIRCLSFLKLAKVKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDY
                     YKLVIFPTLRDMQYRIKNRDLKNARHLFKKPNEQLSHADQLRLKTLLKQHDNLQAVHN
                     YRELLQQIWLKTSLSNKDLLNLIQKWCSQAEESGLHVLRQFASQLKSYSL"
     gene            complement(26744..27988)
                     /locus_tag="JBH85_01505"
     CDS             complement(26744..27988)
                     /locus_tag="JBH85_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HAU0944863.1"
                     /translation="MSFKQLALIEPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGS
                     AQTGTGKTASFVLPILQKASQQTQTSPNRVKVLILTPTRELAIQVHESIIQYGKYLTL
                     RSAVIYGGVKSHNQIKQLDSGLEILVATPGRLLDLYQQRAVKFDEIDTLVLDEADRML
                     DMGFIHDIKKIIKLLPLKRQNLLFSATFTPEVRALARNILNKAVEIDIAPRNTAVKTI
                     KQTVYSVDRNHKLALLSHLLHKNNWGQTLVFSRTKHGANKLVKQLAESQIYSVAIHGN
                     KSQAQRIKALADFKSGKVQTLIATDIAARGIDIEKLACVVNFDLPHVPEDYVHRIGRT
                     GRAGASGLAVSLVSTEEIKLLLSIEKLINQKLERIKIKDFEFLHNFSDFVSAKIQKFA
                     PPKAGYKGNISRKSRTAFNKSA"
     gene            28317..28595
                     /locus_tag="JBH85_01510"
     CDS             28317..28595
                     /locus_tag="JBH85_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HAU0944864.1"
                     /translation="MMKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQ
                     MKGFGFITFSAQQEAESALEMNGQPFDGRSLKVCMAQKKTNSVSRSRW"
     gene            28753..29448
                     /locus_tag="JBH85_01515"
     CDS             28753..29448
                     /locus_tag="JBH85_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HAU0944865.1"
                     /translation="MVIIVSMKANGFFDEQSSLKKSKIGLNLVWMFSLGHIFLITLSN
                     VLVQYPFDMMGFHTTWGAFTYPAIFILTDLTTRIATANKARKIIMLSMTPGLILSYLV
                     ASYIEAGNNLNESGLSVLHLMPLRIALACFIAYVVGQLLDVAVFQRYRNRPAWWLAPT
                     LSAVAGNFIDTALFFTIAFYHCSNPFLSQNWPEIAMVDVFFKIMISLIAFVPVYGLVL
                     SILGIKTTNKLMV"
     gene            29483..30124
                     /locus_tag="JBH85_01520"
     CDS             29483..30124
                     /locus_tag="JBH85_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0944866.1"
                     /translation="MMLTGLRLLTKDLKILNGKYIQLEPITSQHREELRKAANHEQIW
                     QYMPQKATGKLFNSWFDDCLEKMSIRDQTTYAVRCKKEGDLKGATSFYDIQPENKRLA
                     LGYSWYIPKVWGTTTNPESKLLMLHQAFDAWGINRVELGTDSRNIHSYRAIKKLGATE
                     EGVLRQHMILHNQVITDTIMFSILFSEWPAVKERLIQRLNYAATDKDHLAVSI"
     gene            30217..30786
                     /locus_tag="JBH85_01525"
     CDS             30217..30786
                     /locus_tag="JBH85_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944867.1"
                     /translation="MSEYLVLPARKECSMYNKMFKPLDTDPILYFKMYSNYTEGRVDD
                     CCAFILMPSGLQRDWVCLQSIQFAFNKCGDVLGINIIFSGNESNIHKKVRETMEGMLK
                     LKLQYGRGEELFVFDEEKKTFHLGILPGKDTQAYLEGIIAFIQDSYRLQPDFAQNIKA
                     QLLNKEYLAQEYSRLRWKPPEKESVCVLM"
     gene            30941..32287
                     /locus_tag="JBH85_01530"
     CDS             30941..32287
                     /locus_tag="JBH85_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HAU0944868.1"
                     /translation="MYRKRWLILLCALLNNGCLWLGSEYRKPHVNTPQKWPHKYSIQT
                     EQAAYLPDLHWWKQFNSKELNASIQKALQNNHQIHLAMANIESAQGQLQQVQLSWLPN
                     LTGLAGYTQFPVLGNPGTTAIAYPAYIINIFQQYKQQKSAQAMLEASIYAQYSARLVV
                     IAQTAASFFTLIAQNEALHLYNKLLKDYRTYLKLTQSQYRSGLISLDNITQIKSRIQR
                     IEAQIKVVQHNIVVTKNALHFLFNENPGDVEIKTLFENIDSNQLVPGNLPASVLSVRP
                     DIHEAEALLKAAHADVGAITANLLPGINLGAYLGEGSNVDGAIKLGQAYLNGPIIDLP
                     LFAQVDVSKARYKAIYIKYITTIRKALRDVANDLSAYSTSSQQLNNNLSALSDEKQQC
                     HLAEVRYRHGIDDYLNLIKCQILLDEFKLVINQNKLEKLLSIVTLYQDLGGGSRGH"
     gene            32268..33314
                     /locus_tag="JBH85_01535"
     CDS             32268..33314
                     /locus_tag="JBH85_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HAU0944869.1"
                     /translation="MVPVGIDQQKTVRTLRLSLTCIFLFLITWYYQVPESAWTLVTIW
                     FVMYEYSTVGGVLTKSFLRFAGTALSAIYGMIVVYFCANNPLINIMALVPGLFLYAYF
                     FMGGDKTYIGTIGAVTLTIVLLNYNDIDTAVLRVFNVIIGVIGSMFMIRFFYPQYARD
                     KVLEIQLNFITQLANLLESYLNPTQSLAAVQTKYLDYERKMLDGFTLYNRYIGEAKIE
                     TKKAPFFIPHSIAAMQHFRRLFRLFSVFIYYLSTEEIRSDPWVCDQLSKLLRNLQSLQ
                     RKLLQQDAGPIGGDVEVAEPEEEIVIETPNIENKIATEAIVNNMQKEIALLDTEIKEI
                     ILIYDVYDIRLNEM"
     gene            33371..34363
                     /locus_tag="JBH85_01540"
     CDS             33371..34363
                     /locus_tag="JBH85_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAU0944870.1"
                     /translation="MSDKPKAGFPVIILLCVFLFILIYHYSYLFPFTNNAFVVANVRP
                     VAANVKGYITNIYVKNEQEVKKGQPLFTVFKAPYELAYRKAVSHVQEAKAQLLLFNKQ
                     VEKTKYLLQAQKELYEKFRFDYEHNYSASRDHAVSKLTVNTMLKEKNAALSKLKALEK
                     ELEVNQQQVIVQKKKIDSLIAVMKNAKIDLDETTVYAKQNGAVQDMFVALGTPIKTRK
                     PVFAIADTDTLFIQANFNETDLRRVQPGDKVSIFPRMYFGSKIYHGVILSRNWAASRL
                     ETHRATQIQIVRNSESNWFLLPQRLPVQIQITDYDPVHYPLSIGASAYVYIHTH"
     gene            34540..36483
                     /locus_tag="JBH85_01545"
     CDS             34540..36483
                     /locus_tag="JBH85_01545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944871.1"
                     /translation="MKIPFEGKWRATITKREAGFSQRVVVGSATSGNGSYNGVVGNSF
                     VFEDGWVELQWNNNAGSGWQESAVISSVGMTSPLVVVKFVSADDNFPNQRDGDYDDLQ
                     VRFEHLDAPFEVTQRPYALDRGSLAMFPDGIFDASQGIQYMGVRIKNTWFFDWQSNFP
                     ATGMKIGIAPVSRSALSAAGIMVIDSWTPQEQEGLGQIMDGGFVRVPDIKINEETTIY
                     FKLDVSNANPSKPEIGFVAQRDAYDPRYDEPTRIVDKKIFISRSSYNPATRELVTAIP
                     EGTLYLKLNKIAIDRKGATKAAQELKKCLKQHGGGIKGMSKWLHKLSRGFWQNSKDKE
                     RWCKEQGNDALRKLLKQLLDGKDIDICHLKAILDQCCERPGGDCECCPCGDGDGRPGG
                     WDDGTGVDGWCRVKPVFWLPLDFEYKVVPNPAYIGQFGPLAFEDPWWKVVLIILAIIL
                     AIASVIYDYVYASEDDQYIIGQVVRNGDAPINLVDAAVSNLNGSRGVDLGQLDAQGND
                     INNGSPITVLDSIIQLDRTAAGSYFGTLDAVLGNVVWKSGATSATTRGFISTLGTSVS
                     IPYDEHDTLSDTVTYINEVVISELAAIPQTLSDPGDSGSVWVDLATARPVALNYGSPT
                     DSSDNRAFANPIRSVIDVLNLRF"
     gene            36502..38286
                     /locus_tag="JBH85_01550"
     CDS             36502..38286
                     /locus_tag="JBH85_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944872.1"
                     /translation="MKREFFQKLDKILDIASEHKQMLLQYPDVVMVGVGPERRKGKIT
                     GEPAIIVTVRKKRSSNELKKRGEKPLPQTIKGIPVDVIELGKAVEAPEIIAVQEKAKK
                     TISKIRAKWLQTPNITAIGYGYKEKGGEIDFNTIAIQFFVKKKFPIAELQNQQITPIP
                     EKINGVSTDVIQLSPIRPAAASGSRGDRHDPLKGGVAIGVGSKPFHYGTYGATVFDRT
                     TGERLFLSNQHVLDASPGTDTIQPSPVLLDDSVEVGFQLDFCLPIHFIRLDTPNTTVG
                     TVLAGAAVAAAVAAALSDEIDPTRRGQEATMPATGSKTLFETQKVKMDYPELPIPGTP
                     FKVKTAWDYERHTDAGIKTFSVSEEKKNPHVLRDKLLITDKKLYHPGDTIRIFGLILL
                     EECAPASQTRDDRQPISPRELEDITHYPNLASSINLDLVATMDSDIASSPARRTNTRA
                     AVINPKRCRCDRYHPVAILTPTTEDRAFPVVLREPVFAQKNQIFQDLLTVVKQRDDEK
                     LLERVFVLVRYGCIYTGTLRVNNIPAGPWKHFFYVQTVNIATSDMKPLLAAQIIGGLP
                     VSENAKADLDIACGPLTWEDGEFDIELI"
     gene            38472..38870
                     /locus_tag="JBH85_01555"
     CDS             38472..38870
                     /locus_tag="JBH85_01555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0260 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944873.1"
                     /translation="MFGFFSDYKQYITLRNFAVVYNGLTGLAVLYSLWSNPEADPSEY
                     AIDISIHALTAITLMCKQAPESVKAVAMALNTYRGFDALFKAITSLPSTIPGIANAVD
                     VLNHRFNFKELEKLGNEETVETRSAVQHTM"
BASE COUNT        11399 a         7326 c         8134 g        12158 t
ORIGIN      
        1 ggctgttgtt tgatcatttt tccttgcaac agggattatg ataaaatagt gcgcactaac
       61 tattcgcttg taagaagatt aatgaaacat aatttgttgg ataaggctta taaacattgt
      121 gtaaaccatg gctatcgatt taccgagcca agggagcgtg tcctcaaaat attagtcgat
      181 gagagaaagc cactcggggc ttatgacata ctgcaaagat tatctatgga agtggataac
      241 cccaagccac caacggtcta ccgagctatt caattttggc atcaagaggg atttattcat
      301 tgcattgaca gtctgaaatc ctatgtcgcc tgtttgcatg ggcatcatgt gggacaagcc
      361 caatttctta tatgcaatca gtgtgatttt gtcaaagaat tggaatgtgt agttgatttt
      421 actgcggtaa cagaagcggc gaattccatt caattttcaa ttattaattg tactgtagaa
      481 atcaaaggct tgtgttctga ttgcaatctg actaacctga aaaattaatt cccggcaata
      541 attttcctat gagttgtaaa ataaaaattt ttaaataatg agactgattt taagctttac
      601 atttttagat aatgcaaaag ccaatgtctg gctttcgaaa tgttttattg atgatatagg
      661 gtaataaatg ttgggccttg gaatgcaaag ctactcttga gaacagtctc tacttcttct
      721 tttgatttaa tggtcttcac ctgtgccccg aaagataagg caatttgttg aacatcaatt
      781 ggtggatgat tcaaatccag gcgaaaaaaa tcttcttctg tgaaagatct attttgagac
      841 atatctgttt ttaatactct gtattctcga ttaacaaaac aaatgaaaat gacaggaatc
      901 ttatatttgg cagctgacca tattgaatga atcgcataca tgctgccccc atctcctaca
      961 aaacaaattg aatggtgtct ggtcgctaga gaaataccta ttgctaatgg catagcccag
     1021 ccaagcccac cccctcttgg tgaaaaattc acatttaaaa aacctagtgt tgttgcaatg
     1081 tcctgcacaa tagcatcttc tgatgatcct tctgttatta aatgaacaga gcgatttact
     1141 tgattcagga gggtaacaat caacgaatgc agaggatgtt gcttatattt tttttccaaa
     1201 tttttaatgt tggtggctgg tttaagcggc acatttagcc cattaatttt taaatgcttg
     1261 ctaatagcag ttaaggtcgc ctcaagattg ccaagaattg ccagatcgca aggatagtca
     1321 aaggccagat gctccgatgc ggcactgatt tgtatgaatc gtataccctg tggaatagaa
     1381 gattgaccag tatacaaata tcctttcact ttttcgccta aaagtaccac agtttcatat
     1441 tgcagcagca ggttgtgcac ttctccagat ttatctgaca atctaccttt gtaatttaca
     1501 cttaagggat taattacttc acgcacatga tagggggcag cataaatatc ggcatttagc
     1561 cgatcggcaa tggtatgtaa aaggcgaata ctattcgatg cacctacctc ataatccgct
     1621 ataaatgcca attttccttt gggggtattt gttaaaacct cacaaatttg ctctatttca
     1681 gcgttgatgc aagcatgtaa aaattttgtc ttctttatcg tggtttcttg agtttcttct
     1741 tgccaaatgt ccatagggat tgatagaaaa accggacctg gcccaggcaa aattgcctga
     1801 gcataaccac gctgtaaagc aacggccaga tcgctggcgg aattcacctc ataggcatat
     1861 tttactgcag tgtgagctaa agaggtcaag tctccggaca tgactgggct atgaattaaa
     1921 taaggacgtg catgttggcc agcaattatt agcaggggaa ttcctgaagt gaatgcattg
     1981 tacatattac agacagcatt cgctaagcca acataattat gtaaattaat aagagctggt
     2041 ttcctggtga tcatggcata gcctgcggct atacctacgg tactggattc ttgtagtgtg
     2101 agaaaatagg tggcattatc acactgctca atcgcttcca gaaatttcaa ttctgtagtg
     2161 ccggggttgc caaaaatata attaatttca aaggtcgtta taaattcttt gagaacatca
     2221 cttcctgttt ttttcacaga taagcatcct tagaaatagt aacgctttcc atatttatat
     2281 tcctagcaca agagagctat ttgttcaatt tcgctcactc ataaaaaata gggcaaaaat
     2341 acggttttta ggagctaatg ctgtggtaaa tgtagtgatg gggtattgcg agcaaaaata
     2401 aattagatgg cagcgattag atatatcctt gcattttaaa tctggcaaga ggtgataatt
     2461 ataatcttat tttccgtaat cttctaaaat atcccacggg gtagccctta atgggctacc
     2521 gtggaagata aagaattaca atcttaagag agttccttgt ttttcctcaa cagtttttat
     2581 catttcagtt cggggcgctt gcttgccaaa ctcgtttaat agctcatcaa tagactgtaa
     2641 tcgttgctcg attttactca taaatgttgt actgtggttt agatgagtta acagtttatg
     2701 caatttctga gcgctctctt tagatatccc tatggcttct tccaattctg acgggttttt
     2761 ctcagccagg ttactgatga gttcctgcaa atcatactcg tcattattta aatcttcctt
     2821 gaatttagcc aattctttct ctttattggc aagagttacc cgctcatctg tagttaaacc
     2881 aacccaatca gtcaaccatt gtactttcca tcgtccatta gtgatttctt gcgcccttac
     2941 atttcttgtt ttagccattt gagcttgatg agcttcacat aattcacgta aatggataat
     3001 taatgcttca ctcctgaatt gcaactgcac cattgcggga taggcttttc gcttctcgac
     3061 aagcaattgg tttaattttt cgagttcttc tttttgtttc tgtacagcat cagaactttc
     3121 caatttatta atcagtgcgt ctagttgctt caaattttgt tgtgcttctt tttcctgggc
     3181 atcaaaagtt tttacttcca tttgattcag tgaaaccctg atattagttc ccatcgcctt
     3241 cactaaaaat tgattaattt tttgtagttc ttcctttaat ttatcaatat cagacatatc
     3301 aatcggatct tttgactcac cgtgttcttt tatcttttcc tgacgcaatt gttcaatatc
     3361 agctgacata gcgtagaaat tcgaaaccat ccttttcacg tcggccaggt ttttcggttt
     3421 ttctttaacc agtgctgaaa tttctttggt taattcaacc aaataggcgt catataattt
     3481 agtatggatt ttttgtagtt gcgcctctaa ttgtgcgata tctgaaaaat cgactttttc
     3541 agagccagtg tgcatgcgaa ttttttcatt acgcaataat tttaattctt cttgcaggtg
     3601 attaaaacga gagaccactt ttttaacctt ggcaagatca gcgagttctg ctttttcaag
     3661 atcggcgatc tgttgaggta tgcctgctat cagtttttca taacgcactt tcactttttc
     3721 ttgatcgctt accaatttag cagttatagc gcgttgaagt ggctccagag tttcagtcaa
     3781 atcttgcttg gcacgctgga tttgtcctct caaaccacca ctaattgaca gcatggtttg
     3841 catttctttt tcagaaggga tgtttctaag tgcttgtaat gcacctgcaa tattttgttt
     3901 ctccaaagca ttttggcatt gagccaaggc agggagaatt tgaccttcga ggacggcttt
     3961 cttttcaacc atttgcttaa tggcatccat ctgtattttc atttgccttg cttcaactga
     4021 attaaaggca gaccattggc cgtctgaagg gaatgctgat aatactttgc ctagaatggt
     4081 tacattattg tccaagaggc cattgaggct ttgttccaac acaggcgcca ccttttcatt
     4141 cagaaacgtt ttatatcctg attcagtgga gaatttggct tgtcttgcta ctctcgattg
     4201 taaattgaat accctttcca ggtcaggctc ttcccttgct tgctcaacta atctttgaat
     4261 ttcttctaat tttggcgttt gcattttcaa aagaggacca accgcataac cactttcatg
     4321 ccttggcgtg aaatcggggc tttttaccgc aactaaagta aaaatatgtc ggtctttgcc
     4381 tttacctgtt tttccatcaa agcttacttt gattggaacc aaggcaacat cttctggcaa
     4441 ataaatggaa tattcacttt ctgaccctga tacatgggtt ccaacttgtt tggggtgtaa
     4501 taaaccatca ggatcaagta tttcaaagat ggtattggag ccaaagattg tcctgggaac
     4561 ttcaatgtta gtggaagtac tggcacaagt tctagcagaa acctggctaa agtcatttaa
     4621 tttgatttgt ttaaaggctt ctgtcgatag atcagtaaag agatgttctg tcgtattggc
     4681 aattatggtt tcagcctggt taattaattt atttttaaac tcttctgaca gatccaatcc
     4741 acggaatagc gttttggggg ccggggaacg tgatgtatcc atcaatgatt tgttagtcaa
     4801 tggtgtcatt aaagcggtaa tcaacacttc tttgaatgtt gaatctttat cccggttttg
     4861 tgcaatcgca ttgactcgag tatggtacca ggcatcattt tgcatgagga aaattaaatc
     4921 atgttttatc tgggtaaccc caccacccga tctgattgtt ttttcccatg tttctcccag
     4981 tttcaccggt tttgctttgg catcggttga gtgaaattct gtgtttctct catgttgcat
     5041 taaggtatcg atatttctaa tgtctgtgtc gtttaatagc gaccctacaa tagccatgtc
     5101 acatttcgcc aacaaatcac gaaagaattt ttcttccagt ttttgaccgt taaggaagac
     5161 atgatcgtca tggatacaat caggattggc catgatttgc tgaacaatac gtgcagcagc
     5221 aatttcatcc atattgggtt gtcttcgcgc tttctcagaa ctcgattgaa atgctctctt
     5281 tatcggagtg attttggttt gatgatgtgc cgtttgtaat tgtcccaaac aaaagtcgac
     5341 atcgttttca caccgtgctc tgtttattga gttcaagcgc tgtaaatatt gatattcttt
     5401 cagtccaggc agtcccccat cgagtttttt accagcgcca gggaatcgct tttggacctc
     5461 atcaagtttt aaatattcat caacgcgcat gtaacgttgg ttttcctcga gtttcttttt
     5521 ttgtgagaaa aattttaatt cacctgattc ttcctcgtct tcgtcatcag attcttctcg
     5581 tattggattg ccatcttgtc caatcacata gcgtcctaaa ccatcgacca ctagatgagg
     5641 ttctttgttt tcgctatcaa agcccgcaac tgcttcatag gtggcatgga aaaattgtct
     5701 ctgtgtcgca aaaacagctt ccgtagctgt tgaacctatc cagggttgaa gttgtgaaaa
     5761 atagtattcc aggtaagatt cagggggttg ttttactctg accaaatcaa ccatatggcc
     5821 ctgattgacc aggacatgcg ccggtgaatc tgcccattta tgatctttat cttcaatcac
     5881 atcagcatag aatttgacat ctttttcatc tttgaataca tcaggaatta aagtggattt
     5941 attctcttcg acatacttca aaaaagcatc tcggctttgt tcgtggtatt tttcataatt
     6001 cttggaggat tcttcatcgt ctcttccagt gacaaagaag gcctgggcga tcatgatttt
     6061 tctcaattct tcaggcgtga catccgccag agtacgacca tcagcaaatg tttttaatga
     6121 ttcacccctt aattttgctt ttcgcgcttc ctcaacaatg atttccgcat aggccatggt
     6181 gcgcaatgtg tgggcaagac catggtgttg tctgtacacc atttgcccac caaaattgac
     6241 aggtgtcgct tctactgtac cggtataagg ttttcccaag taattatcat acgcgtatct
     6301 ggctgcattt ctcacggttt catcagtata taaggaaaaa ccattccacg tgggaacgga
     6361 tacttcttga ggagcagtag gatttatcga aatttcttta ggtgatgttc cagttaaaac
     6421 aggctgaaac tcatcaatac gtacattctt ttcagtagca cgtcttaagg ctgtggcatc
     6481 aggttgtata tcaccatctg gaaattcatt gccaacggca cgtaaccatt gtgtaatttt
     6541 ttcgcttcca tcttgtgtta gttcatctcg catttcctgg gtaatggttt gacccagatt
     6601 tcttaaagaa gggggaatag gttgggttaa tgccgcatga gctcttaaac caactgaggc
     6661 aacccaatag ccgcataatc ccatatttaa tccagcatta ttaggaataa cagaaagcgt
     6721 agcgccaggt agttttttag ctaaaatatt ttggtaatat tttcccgagc tttctcccag
     6781 cgggtcaaag agaaaatatt gattgccttg acctttaatt aacataatcc aatgtcccga
     6841 gtcttgcctt gggctgaccc cggtcaatac tggcataaag ccttgcctgt caagagcacc
     6901 tttatcaatt gtaggctctc cgttgtagat agtaccgctg gtaatatttg gatgtcccat
     6961 gcgctcaaaa atagcatgca tcccttcttg ggttaattct atcccttcaa cgtacttagg
     7021 cattacacaa ctcctggata aatactttaa aattaatatt tgtgacttaa aaatcagcac
     7081 agtgggtaaa tattatagct gtcaaacttt aagagaatat taagagataa aaaaaacatc
     7141 ctgcttaaga tctgatccca atgtcctttg gtttttatca tggatgtaaa agacaaaaat
     7201 tatttgacag gacttacgaa aaaccccgag gccaaggcaa aaaatgtttt tagtgaggga
     7261 gtttagataa attaaatgac cgaattaaaa acatttttta acatagaaat tggggttttt
     7321 tgtaagtcct gtttgaatta gttttggcaa aacggtgttt tgtcggattg aaaaaatatg
     7381 agagccagat caatgtagtg tgctgaatat tttggaaaga taaagacata ggatacggtt
     7441 tatcagttgg catcaggcaa ttcaaataat tcccctgaac caaactgctc tttgggagcg
     7501 tctttaaatt taggcagttg atcatcgcaa tccataatac gactggcata ccatatgtgc
     7561 cttactggtt taaatgaatc tgggatgctc gtatcaaagc taaagttatt tacattaatc
     7621 ccaatactat cctgttgcgc gggatcaagt gcaataccat aaacaaggct gtgacaatat
     7681 gagcaaagaa ataactttgc cttttcttta atgatttctt caaaatcatt atcctcagac
     7741 aagatcctga agtctctagt caaataagct gcagtgaggg agtaacctga tttatcctgt
     7801 ttcttttgag acaaagaagc aatttctcga catttattgc aatgacaata ttgagtaaag
     7861 acaggctcac ctgtacacat aaattgaatt tttccacaag cgcattgccc gtaataagtt
     7921 gccattattc taaatgcctt cttcaattgg tggtaatcga aagtatattt taaagaaaat
     7981 ccacaaactg aggttatttt atactttgta gctattaatt aaaacgtaaa attccatgat
     8041 gagctattaa ttggttctga gggcggcatg tggatatctt tgatattatg aataatatcg
     8101 tctcgcttac accagcgctc ttcagaccaa tgaagaaaat cgaagacctg ataccccata
     8161 tttttcagct gagttatgcc gattttttgc agtttgcttt tttcctcttc aaatagctct
     8221 gctacgcgta gcacataaaa ggggtttcct ggtactgctt tcatcgccat tttataatgc
     8281 tggttaatgt ctggggcatt gatatcaaaa aagcattgaa catcggccag gagataatgt
     8341 gctttaccca gttgcaagcg caaggctttg tcttgagttc cttccaatag agcaattaac
     8401 tcctccaatg ttttaattaa aatcgcaata tcttgttggt gttcaatttt atgttttctg
     8461 atagactcaa aatcagaaga gtaataatta aaagcaattt tttcacgcaa agtatctact
     8521 cggcgcataa gtccggctgc cagggcgcgc gtatgatgtt cttgttcttc tttattgctt
     8581 gagcggcatt ctctcaacag agtgattgct ttttggatgc tggcaatatc actgtcctct
     8641 gctttgttca ggtcgatatc tgcgtcgatt aataacaagg catataagcg tttgtgagcg
     8701 tataaatctt ccaggtattc gtcagcggga tccaggtggt gcgctgcctt tttttgctcc
     8761 aggctttgca gataatattg ttttgctttt tcccaatttt tatttcctct atatgttttc
     8821 ccggctacgt aggctgtttc agcgtcacta taaaatatct tggcaagcaa tttacgctca
     8881 ggcattgaaa ataggttagg ggaattgtat ttcttaaaga tatcataagc cttttcataa
     8941 ttttgctctt gaatttcaat agcaaatgct gcattagggc taatttcttc aatattggtg
     9001 taaaattgtg ttgccaggag atattgtttt ttttcaatat aatatttcgc catgatggcg
     9061 gcgattgctg tgtctttttg aattaaagca tgacgttctg tttctggaat cgctaacaaa
     9121 aattttaaaa ccagattgga gtcgttcaat atgcccaata gattaaatgc attgtcatat
     9181 tccttttgcg caagatgata ttcaatgaat ttctgggcat cccgcttggc tatttgagga
     9241 tcgtaagcaa gagccaaagc gagatagcga gggcgcgggt cggtccaaag caagcggaaa
     9301 aagaatgaag ggacaattgt atttttagcc ttatcacaat agtactgagc agcagctttg
     9361 gcgtatttgc tatgttgcaa aaagaacaca tcttttgctg aaatcccctt cttatccagg
     9421 gtgctgatta cctccgcgat caagctgtca tcttgagggt ctaattgcgg aatcagtccc
     9481 cactcgtgtg cgtgcatcca gctttcacca aagcgatgat ttgggtttag tttctggtag
     9541 gaataatcaa ttccaagatg gggctccact ttaaaataat tattcaccaa tttattttgt
     9601 agttgggctg tcgttaaatc atctctgctt ttgacaacca gggcagaaat ttcaggagag
     9661 attgagtaat ttgttattga tgaaaaatca ggctgaagaa attgttttgt gtatccataa
     9721 tacgagagtt tgtctaaaac gtatgaaatt ttctctggct gacaatgatt atcaaagcca
     9781 agccagcctt taaccgtttg aaaggcatac atcaaccaat gggtaggttt tatcacaaat
     9841 ccgttagtat acaggtattt tgcggaagat aactcatgcc ataaatgggt atactgtatt
     9901 tgattcaatt gaaacagaag cacatccggg tagtattcca taaccccttt aagatgctga
     9961 gggattctct ttaataattc aatattagta taacgcattt atttttatct aaactaatag
    10021 agcaagatga gatgaagcgg agtatagtaa accttaatta aggaattatg aagcgagctg
    10081 attttctcgc aattatcttg ctagatgtca ggtagtgtgc tttttatgag aatcaacaat
    10141 tatggtacca gaaactaatt aaacgtgttt gttgacaaat gctttaattg atcaaaccat
    10201 agttaactca ggtgaaaaat tattgaatga agcgttgcgt ttgttcgtca aaaaaatcga
    10261 ttaaggagtt tttgcgacat ggccacactt aagattaatg gtgttgatat ttattatgag
    10321 ctctatgggc aaggtaaacc actggtttta attgcaggct attgctgtga tcacactttt
    10381 tggaacgcca tgctccatga gttggccgaa caattccagg tattgatatt tgacaatcgc
    10441 gggatagggc aaacaagaga caatggagct tcttttacat tagaagctca agcggatgac
    10501 atcatggctt tcctggagca attaggtttt agcaacccgt ctattctagg acaatcaatg
    10561 ggtggggcta ttgctcaact gcttgccaga aagtatggta aaaaaatcaa taagctgatt
    10621 attttaaatt cggttgcaaa atttaatacg agagcaaacc aggctatgga aagtcttttg
    10681 aatctgcgta aggagaatat tccattcgat ttattaatag aggccggaat accatggttt
    10741 ttttcaagcg aatatttggc tgagcctaaa aatatcgctg cttttaaaga gaatttgaaa
    10801 aataatcctt atccgcaatc cttacaagat caagcgcgac aatttagaac cataccacca
    10861 tttgattccc gcgggtggct acatgaaatt aaagtgccca cactagtgat agcagcagag
    10921 gacgatatac tgaccttgcc tgcagaaagt caacaactgg cacaagggat ccctaatgct
    10981 caattcatta ccattccagg agggcattcg agcccattag aacaagccat gatagtcaat
    11041 gaagtcatac taaaattttt aacctcttcc taaaaaaggt gcggaataaa tggaaattta
    11101 caaaatgtac attgatggga aatttacttt agccaaaagt ggggctacac gtgacatttt
    11161 tgatccggct aatggggatt tgattgcaaa agtgccagaa agtgctaaag aagatgccat
    11221 acttgctatc aaagcagcga gaaaagcctt cgatgaagga gagtggagaa aatcactggc
    11281 gcttgatcga ggcaaattgt tattcaagct tgctgatttg attcgagcca atgctaaaat
    11341 gttggcagaa ctggaaactc gaaattgcgg aaagccgtta ctcgaagcgg agtttgatgt
    11401 cactgatgct gccaattgct ttgaatttta cggtgggctt gcgactaaaa ttcatggtga
    11461 aacgatgtcg gttccagcga attcatttag ttacgtagta cgtgaaccca taggcgtgtg
    11521 tggtcaaatc attccatgga attttccact gcttatggcg gcctggaaac ttgcccccgc
    11581 acttgccgca ggcaataccg tggtattaaa accatcagaa ttgaccccga taacggcact
    11641 tgagttattc aagttgattg atgaatgcgg atttccagcg ggcgtggtta acctcattac
    11701 tgggccgggt ataggagttg gagaggagtt ggcaagtaat gctatggtgg ataaggttgc
    11761 tttcaccgga ggatcggcaa caggcagaaa aatcatgcag gcggctactg gcaatttgaa
    11821 aaaaatctcg ttagagcttg gcggaaaaaa tccaaatatt gtctttgcag actctgacct
    11881 tgaaatggca atcgacggtg ccctttttgg tgcttttgca aatcaagggg aagtctgttc
    11941 tgcgggttcc cgcttgctag tggagcgctc tattcacaaa aaaatagtag agggaatgtt
    12001 gaaaaaaatt ccaaatatca agcttggcca tggtttggac gccggggtaa aaatggggcc
    12061 tttggtttca agtgcacatc gtgaaaaagt ggaaagctat gtcaagcttg gaatggaaga
    12121 aggagccaaa ttactttgcg gcggtaaacg cccgacaggc aatgaatttg caaagggaca
    12181 ttttttcgag ccaaccattt ttgatgaagt gaaatccacg atgcgcattg ctcgtgaaga
    12241 aatttttggt ccagtactcg tagtgatacc ttttgacact gaagaagagg ccattcgcat
    12301 tgcgaacgat actgattatg gtttatctgg ggctgtatgg acgaagagcg ttactcgggc
    12361 ccatcgagtc acatctcaaa tccgtgccgg gattctttgg gtgaatcatt accatccaac
    12421 ctataatgaa atgccttggg gcggatacaa acaaagcgga gcgggtcgtg agttaggttt
    12481 gtatggcatt gagagttacc ttgaggtcaa gcaagtgaat attaatctgg atgaaacacc
    12541 aattggttgg tactaaacta atgaaaaaaa ttcatatcaa aacgccaatt cccggaccca
    12601 aatcgcaaca gttgatggaa ttgcgacgtc agcatgttgc aagagggcca tttcatgcta
    12661 ctcctatctt tgtgaagcag gcgaaaggtt cttttgtgga ggatgttgat ggaaatgtat
    12721 ttttggactt ttcatcaggg tttggggtgg tcaatacagg gcactgccct gattcggtgg
    12781 tcaatgccat caagctccaa gccgaaaaat ttatacacac cggcttcaat attattcctt
    12841 atgaatctta tatcaaggtg tgtgaaaaat taaatgatca caccccggga catttcgaaa
    12901 aaaaatcgct ccttttgaat tccggtgcgg aagcagttga aaatgccatt aaaattgctc
    12961 gtgcctatac gggcaaacaa gcagtgattt gttttgatca tgcttttcat ggacgcacgt
    13021 acatggcaat gacactcact tcgaaaaaca aaccctataa gcatggattc ggcccgtttc
    13081 cttctgaaat ccatcgtgct ccttttcctt atgagtatcg ttggaaggga gccaattgtg
    13141 tagaagaatg tttcgatgag tttaccgatc ttgccaattt ccgtgtcggt gttgaaaaca
    13201 ttgctgcagt cattatagag ccggtattgg gtgaaggtgg atttattcaa tcccctgcct
    13261 tatttttgca aaaacttcgt gagttttgta cgacaaacga tatcgttttt attgccgatg
    13321 aaatccaatc cggttttggc cgcacaggaa atctgtttgc gatgaatact ttgggagtac
    13381 cccccgatct caccatatca gcaaaaggcc ttggcggtgg ggtagtgctt gctggtgtaa
    13441 caggtaaagc tgaaatcatg gatgcggcta tggaaggtgg gttgggtgga acttttggtg
    13501 gaaatccact tagttgtgct gctgctcttg aagtgttcca tatttttgaa gaaggaagcc
    13561 tgctgcaaaa tgttacccat cttgcaaagg cactgcagtc cagactttct ggatttaagg
    13621 aaaaatacaa ggtagttggt gatgttcgtg gtttgggtgt catgcaggca atcgaattgg
    13681 taaaggataa aaacacgaaa gaacctaata aagaagccac agtacaattg gcccaatttt
    13741 gtttagaaca tgggttgatt attttgacct gtggaaccta cgggaacgtc attcgtctcc
    13801 acatgccact ttctactggc gtaaaagatt tggaactcgg cctttcgatt attgaagaag
    13861 gattgaaaaa attgtcggta taatagctag gaagtttgaa atgagaaagg tattcttaat
    13921 actcacttaa ttagtttttg atatcatttg ctctaattaa ttacaggtga atgatattat
    13981 gtggtatcaa aatataatgc gcaacttgct tgaaaaactt ccggaagcaa gtagaaaaga
    14041 tggcgagttt tttttagaca agctgttttt ggctgttaaa agagtagaca ataaacctga
    14101 aatggaattc tttttgggcc ttattgagaa atctttttta aagtttgaaa atgaaaaatc
    14161 cggctcagtc accttggtca aattctccag atatattttg ggactcacct tactctatat
    14221 taagtcgggt aatgacggtg ctatatggaa ttcagatttt attccatacc ttggagaaat
    14281 taagaaattc tttgatgtag aaaaagaggg caaatctttc tataagtttc tcaatcaact
    14341 ggaagtggac gtttttgtca gtttaaatca tcagcttgct attgacttca agcatttcac
    14401 ctccattcta agaggaaata atgatttgaa aaccattcaa tcttttactg aagcttgtaa
    14461 aggattaggt aatgagagtt cggaagggtt taaccaagtg gtgaaggatg cagaggcgca
    14521 catgataaat ttgcagtttg ctgatgattt aaattctgat tttaatcttg agggcattga
    14581 tgaaaatctg agaaatacta cgttacagaa atcttctcat gccaattcca tgcccatgag
    14641 tgtaaacaaa gggcatcgac tgagtatctt taaagcactt gcaacttctg gcgagttaag
    14701 cgaccaaacc agtttgttta tcaatcaaaa taatggacca atatagtgtc cctcatcatt
    14761 ttgtttccag aattctttag cgaacaaaaa atctggtagt cagagtagaa atggatttct
    14821 gcctgtagga caaagacctg ttcgcttgat gcataagacc aaggcaaaaa atattttctc
    14881 aataccgtta cttgaactaa gttttcatcc ttcacttatt aactaacagc attcttgcaa
    14941 aataaaatat ttgtcttgat gtgctaaatt taccataata gccccttttt taatccaata
    15001 gtactatgtc atcaaaattg cttaccatcc aattgttaga agagcttgtg catgctgccg
    15061 aattaaatca agaaggcaaa accgcggatt atatccctga actggcgaat gttaatcagg
    15121 aattgacggc aattgcggtg caagctttgg gtgagaaaac cttggcttat agtaataatc
    15181 cacttcatcc agtgactttg caaagcacgg ggaagatgat tcctttgatt ggtttgcttg
    15241 aagagtttgg cgccgatcaa ttatttgaat gggttaaggt ggagccctca ggtgatgatt
    15301 tcgcttccat tacccgcctg gagcagtttg gacctaaacc gtcaaatccc atgttgaacg
    15361 ctggcgctat tgctttatgc tcacgcattc ctggcatagg tgaacagcaa tttagatggc
    15421 tagagcattg ggtacaaaaa ttatttaatc aacgtctcag tattaatcct ctggtttttg
    15481 cctctgaaaa acgaaccggt aatcgtaacc gcgctcttgc ttatttactg aaaagcagaa
    15541 acaatcttgg agctgatgtt catgaaaccc tcgatttgta ttttgcgcta tgttcctatg
    15601 aagccatgtt ggatcagatg ctgtacttac ctactttgtt agctaataga gggaaagatc
    15661 cggacacggg tgaacaaata ctgtctacgg aaacctgtaa aattacttta gccattatgg
    15721 cgacttgcgg gttatatgat gaaacaggta ctcacatggt taaaacaggg atgccagcta
    15781 aaagtggagt atctggttat accatcgcgg ttgttcccgg taaagcaggt attgtggtat
    15841 tgagtccaag agtgaatgcg aaaggaaata gcatacgagg tgaaatcatg ctggaaggtt
    15901 tatccaaagc aatgaattgg catttcgcat taccttaatt tttaaaaaag agcgttatag
    15961 aatggtgagc catctctttg attgaagtga aataacgatg acaaattgct tgtcacagcg
    16021 gagtggaaaa acttaattaa atttggatta aaggatttta catgaaaatt gccgttgttg
    16081 agcctatagg gattgcgatg caggaaattc gttctgaatt accaggccac acgattatcg
    16141 agtgtgacag tcgtcagtgg agtgatgagc aattaataga ttttgtgaag gatgcagaca
    16201 tcattgcact gacgaatcga cgtttatcag ctgcagtcat taattcagcg ctgcgattac
    16261 aattgattgc tgttgcattt gctggaatcg accatattga tagggatgcg gtgagtaaaa
    16321 gaaatattcc ggtaaaaaat gcagcgggtt atgccaacac tgcggtatct gaactggtat
    16381 ttggtctcat gatttctctt gcacgtcata ttcctgataa caatcagaga ataagagagc
    16441 aaggcataac caataccggt attgaactaa aaaataaagt gctgggcatt gtcggttatg
    16501 gagcaatcgg tgcagaagtt gcgcggcttg ctaaggcatt tcaaatgaca actataattt
    16561 atgacaggaa atctcaagta acattagacg atttgttttc ccaatctgat ttcgtcactt
    16621 tacatgtgcc acttacaaat gaaaccaaag gcatggttaa cttaagactt ttatctcaaa
    16681 tgaaaaaatc agcgtatttg attaattgtg ccagagggcc gattgtggtt aacagtgatt
    16741 taaaaaaagc cttggaacag gacatgatag caggtgccgc attggatgta tttgatgttg
    16801 aaccaccatt acctgcaaat tatagccttt gggaggtacc taatcttatc gcaacaccac
    16861 acataggatt taatacaagg gaggcacttg tggccaaggg gcaattgact atcagaaata
    16921 tcaaagagtt tctttcgtcc cgtctataaa accgtgtaaa aacataaaga aacataattt
    16981 tacctgcaat actatgcaaa accatgcttg ctgttttttt aaataatttt aatcagggct
    17041 tacaataaac cccaatctct ttgttaaaaa atttttaatt cggtcattta gtttatctta
    17101 actccctagt taaaaacatt ttttgcctcg accttggggt ttttcataag tcctgttaat
    17161 gttaccctac gcaatacact tgacctgttt gagcgccctc aatactcttg ctgtaggcga
    17221 gtgctgcacg agcagcagat acaggttcat agcctctgaa ataggggcca tagttttcca
    17281 tggcttcggt aattactgtg gggcttacac cattgattcg gatacctctt ggcatttcca
    17341 gagcagcact tttgataaaa ccatccaatg cgccattaac catggcagcg gaacttccat
    17401 agagaatggg gtcacgattt aatattccgc ttgttaatgt aaatgagcca ttatcattga
    17461 tgtattctaa tccagccaag actacattaa cttgacccat tagtttattg gtcaaaccaa
    17521 ttttataatc gtcttctccc atgtctttta gggcagcaaa gtgcacttta ccggtagcta
    17581 acacaatcgc atcaatagta tttaattttt tgtacattgc atcgattgat tgtttactgg
    17641 ttatatccac ttgaatatca ctgtttttat agctcgctga aataatttca tgtcttgggt
    17701 ttaattcagc aactattgct tttccaatta tccccgtagc accaatcacc actattttca
    17761 taagtcattc cctctttatc caataaaaag caaaagtcct acatagaata gtacagtaac
    17821 aacaataagt tctgaaataa aaagtgtgta tcggctgtat ttgattactg cctatacaca
    17881 ggatttattg aagaagagaa gtaaaatgcc tctattaacc acttgccttg tagcatgtaa
    17941 tatggcgagt atggttttac atcaattcaa attatttgcg caaaccacag attgatgcct
    18001 tccactagag tagggtgagc gaacatcata tcgcgcaatt tttgataagg tacgcgcaac
    18061 tccattgcta attggatgac ccctaatatt tcccctgcct ccgcacagaa aatagaaacg
    18121 cccaaaatca aatcggtttc agcgtcaatg actgctttta aaatacccgt tgtttctcct
    18181 tgggttttgg cgcgaggaat cgcagctgcc ggaattgtgg cgattttaat tcggcggcct
    18241 tgggatctgg cttgagcttc agtaagtcca atgcgtgcta attccgggtc gagaaacact
    18301 gtgtaaggaa taagcctgtt ttgggaagaa agctttttct gggggttttg taaattatgt
    18361 ttcaccagac gatagtcatc aagagacagg tgggtaaatt gtgcccctcc cttgacatcg
    18421 cccaatgccc aaatccctgc cgctgtcgtt tcgagaaact cattgacttt gatgaatcca
    18481 cgctcatcaa gttcaacgcc agttttatcc aaatgcaatc ctgctgtatt ggcaatacgc
    18541 cctactgcaa ccaggacagc tgtgccacga ataatttctg attggccttg tcgattagct
    18601 tcgataatca cttcagtttg ctcttggcga atggcattaa tctttgtatc gacagcaaat
    18661 tgaatgcctt cgttggataa ggtttgaaaa acctgttcag caatgtcctt gtcttcccgg
    18721 ccaagaaatt cgctgctggc ttcgatgaca gtgacttcag caccaaagcg gcgaaacatt
    18781 tgtgcaaatt ccaagccaat ataaccgccg ccgatgatca ataaatgttg gggtaccaaa
    18841 tcggtgttca ttaaactgtc attggtaaaa taattgactt tatcgagccc cgcaatgggg
    18901 ggaatgaatg gcagagcgcc tgtattaata ataattttat cagctgtgat gtgcagcgtt
    18961 ttttgcttgt cacgtggtga ggatagggta acttcaatca tttttggtcc aataaaatga
    19021 ccatgtccta acatgagatc catgcctgag tctaaaaact gttttaaatt cgcttcacgc
    19081 atccctttca ccacagcgtc tttacgtgct cgaattgctt taaaatcaat tgggtgcaat
    19141 gtagtattta aaccatagtc ttttgcttta cggcagtaat gtgccacttt tgctgactgc
    19201 acgagcgttt tcgtaggtat gcatgccaca ttgatacagg tcccaccgat ctgattgttt
    19261 tcaaccatcg cgattttctg gccgctttta gccaaatcca ttgcaagagt cttcccacct
    19321 ttgcccccac ctaatatgat ggtatcaaac tctaaaacca ttccattctc ccgaaaattt
    19381 caatgtttta tccacttgat gatgatcctt atttacaata cttgaattaa agaggaaagc
    19441 tcacgcaagg cgataaaaaa tatggtgtaa tctatgtttt cgctacccaa taacatttct
    19501 aataactttt cccagcgttt ttgaatgggg tgattttgtt ccagccaata gtttatcaat
    19561 ttttcagaag tacgttcttt ggtgttagtt gttaaaatgg caatagtcaa acgtctttgc
    19621 agattatcta actcatcacg caaagacagg cgagccatgg tattccaatg cccttcacgt
    19681 gagtcattgg ctatttggtc gcgaaaccaa acgagattaa attgactacc aactttaaag
    19741 taagtttctg cagtaagcga taaatcaaat tcattttgcg tggctacttc aatgatattt
    19801 aatgaagtat aaagagcccg agttatagca attttttgag ccatatcctt ttcaatacca
    19861 atactgacga attggctaat gagtttctca aggtattctt tagtgacacc acccatgagc
    19921 ttgggaatca acagttcaag ttttttgact gacttgccat aatttttaat atttttttca
    19981 atgcctccgg tcagtcgatt attatgcaaa aaccagcgtg tcgccaagtt gagcaattgg
    20041 cgaatgtgat gcaataattc atattgggtg gataaggata ttttatcttg aaatgaatca
    20101 atcagatttt gtaagacatc cgtttggaaa atacaggctg aaatagtgta agcgcaggca
    20161 atatcagcaa tcgacatacc ggtttccatc agcatgcggt acatgaaggt aattcccatg
    20221 ttgttaacca gcttattgct cagttgcgtc gctatgattt cacgagacaa agggtgtttt
    20281 ggcaaggctt tcgcataggg ctttcgtagc gagatgggaa aacctgtttc caaaaaagtt
    20341 gtgaagtatg agtcatcggg taaatgcgat tttaataatt cgttagcaat atgaattttg
    20401 gtgtgtgcca ttaaaacagc aagctctggt cttgtcagcc ctgcgccagt gcttttgcgt
    20461 tcgaggagtt ttttatcgtc aggaaggaat tcaacgcttc tgtcaaggtt aacccacttt
    20521 tccaattctt tcatgtaatc ttgatataag ccactataat gagaagaatg agctgccgat
    20581 atacttaaaa tcaaggcttg attgtagttg tcttgcaaaa caagatcggc gacttcgtct
    20641 gtcattctgc ttagcaattg attgcgtttt ttttctgtga gtttcttttc tctaatctct
    20701 ttatctaaaa gaattttgat attgacttca tggtcagagc agttaacgcc ggcggaatta
    20761 tcaatcgcat cagtgttaat aagaccgccc tttaatgcaa actcgacgcg tccaagttga
    20821 gtaaaaccca gatttcctcc ttctcccact accttgcagt gtaattctgc gccattaata
    20881 cggcagaatt cattagtctt gtcgccaaca tcggcatgtg actccgtggt tgctttgaca
    20941 taggttccaa taccgccgtt aaacagtaaa tccactggtg cttttaacag cgctcgaata
    21001 agctcattgg gcgtaagggc atttgcatct atagcgagag ctttttttac ttgcgggcta
    21061 atggggatcg atttgcttga gcgtttgtaa acgcctccgc ctttagaaat aagttgtaag
    21121 ttgtaatctt cccaggatga agtaggtaaa ttaaacaggc gaagtctttc ttcataggat
    21181 tttacagggt cgggattcgg gtcgagaaaa atatgacgat gatcaaaagc agctaacagc
    21241 cgtatatgtt ttgaataaag catgccattg ccaaatacat caccactcat atcaccaata
    21301 cctactaccg taaagtcttg ttgctgaata ttgatatcaa gttcacgaaa atgtcttttg
    21361 acagattccc acgcaccacg tgctgtaata cccatttttt tatgatcgta cccggcagaa
    21421 cctccagaag caaaagcatc acctagccaa aatccatgtt ccttggcaat actattggca
    21481 atatcggaaa aagtagctgt tcccttgtca gcagcaacaa ccagataagg gtcagggtcg
    21541 tcgtaacata taacattctg tggagggatt gttttatcat tgattaaatt atcggtgaga
    21601 tccagtaaac cattgatgaa cgatttataa caagagatga cttcctgttg gatttgctcg
    21661 cggctggctg catgaagcgg ttttttcaag acaaaacctc ccttggcgcc agagggaaca
    21721 atgactgcgt tttttacctt ctgcgctttc ataagtccta aaatctcggt tcgaaaatct
    21781 tctggccgat cggaccagcg aataccgccg cgggctactt tggtactacg taaatggatt
    21841 ccttcaaaac gtgttgagta cacaaaaatt tcataaagcg gttgacctgg aggtaggtca
    21901 ggaatttccg aggattttaa tttgaaggaa aggtaatctt tagataatcc cgcgtgattt
    21961 ttttgaaagt aattagtacg aagagttgct ttcatcaaag accaaaaata acgcatgatg
    22021 cgatcctcat ccaggctgct aatcgcatca atgtttattt gaattttctg ttctagtgcc
    22081 aatatgtcct tgtgaatagc agatttcctt ttaaggccaa atttcaaata aaagaagtga
    22141 atcagctcac gggcaatggc cgcatgcatt tcgatggttt tttcaatgta agattgactg
    22201 taacgaatac caatctgatg gaggtatttt gcataggctc gcaaaatagt tatttcttgc
    22261 caggagagcc ccgcgcataa taccaattta ttaaaaccat cgttttcaca aataccaaga
    22321 ttgatactaa tcagtgcctc tgcaaaaata tctttgacct gagtaatgtt gattgaatcg
    22381 gtttgagaat aggttacgtt aaaatcacta atccagaata attgcccgtc ccgtgttttg
    22441 attttataag gacgttcggt ataagtgcgc agtcccatgt tttcaagcat aggcaagatg
    22501 tcggataggg ggattggggt ttcataccga taaagtttaa tgtgcaaagg atattgtgag
    22561 tgagtgtttt cataaaaatc gataaccagg ggattttctt tggagagttt ttctatctgt
    22621 aaaatgtcct ggattgcctc ttcgggagta tgttgttcac tataactcat tgacattgtt
    22681 tcggtgtatt tatcaatgag ctgtttccct tttggggagc caaattgctg agttaattgc
    22741 ttttgcaatt tatctttcca tgagtttgtc atcattctta aaattccatg caagatatgt
    22801 ttttatcgtt actcaaaagt ataggccatt tcaaagaata aaattaaaat ttactaactt
    22861 attttacaca aagtgagtca tttgttttca ggaaattatt aagtaaactt taataaaagg
    22921 ttaaggacat aaaagtataa taaagcttct ttcaaaagac gaagcacctg ttatgtataa
    22981 aaatatactg tttttttcaa attttagccg tatgcgttgg aacgagtacg acggggatcg
    23041 atatcaaagt ctttgggaac ataataagcg agatattaaa cacacatttt tcggcacgat
    23101 tgcaaacgga aaagatttga gagaagtgct attccagcca gttactgctt ctttttcgat
    23161 gctagtcgcg ggggcatttg cccaattact ggtgccctat tccattttca tgctctgtat
    23221 gggtgaggcg gggtttgcgg gcagaacatt aattaattat cttgaaataa ctactgttgc
    23281 tttggcaatg ccatttattg ctttattaag tactgtaggc cgatgtattg caacggttaa
    23341 atgcctggtt gaggatcaat acaatttggc tgagatggtt gaagacaaag aggttaagcc
    23401 aaataaaatc tatcttgatt gtgctgaagt aaactacact ttcagggatg agaacaacaa
    23461 tcagttcagc cgcaaatatt ataaattcca atataaaatg agaggtctca acgatgagct
    23521 ttgccaggga agctttactt tcagagattt agagcgtgct cctgataatg acgatttcaa
    23581 tggaaagctt tccagtctca cactttataa atacgacatc ctggatttga ttaaaagagt
    23641 tcataaagat aaatttgaag aaatggaaga cgaaaatcta attcgtatgt ccatttaatt
    23701 tagattagtt taaaaatcag gatgtttttg ttgaaagcta taatggatag tgattatttt
    23761 tctcaactac ttgttactta acaggccgcg ttatatcgtt tatgaaggat gttattggtt
    23821 cccgcttata tttttgatgt gctgacttaa taatcagtta ttgagtcggt atttaaagca
    23881 agacaaaaca gagtgatgga ctaaataaaa ttattaaggg aatgagagcg tgcgtgtatt
    23941 ttatggctta ttaggtttca tgatatttaa tttggtggct tgtgaaaaaa tggcattact
    24001 gactacgcca cctaaaaaac agcaattatc taatagtcca ctggctgctc gggcagagcg
    24061 atatttttgg cgaacccttc atgaggggcg atatcaggac attccgcaag cggattattt
    24121 gctgatggca gcttacctcg agaatccata tgattcgaaa ttagcggccc atcttggctt
    24181 tattcatatt tggaaaatta ctgagcggga aagagtaaaa aataactctc ccttgcttcc
    24241 caatgaaatt attttgtcta aaaaatactt tgctgatgct ctgcaactgg atccggaaaa
    24301 cccaatttat caaggatttt atggcgatac ccaattagta gaagggcaga tttttaaaga
    24361 caaacaagaa gaagtcagag gatattttac tttacagaaa gcgataagca attggcctga
    24421 gtttaattat tttactgcag ggtaccccat gagtagttta agtgctgatt cggatcattt
    24481 taaaaagggt ttggattggc aatggaaaac tttggatatc tgtgctggtg agaagattag
    24541 tagacagaat cctgatttta cgccttatat gaagagagaa acgacaatag gcgcgcaaag
    24601 agcctgttgg aattcagaaa ttgcgcctca taattttgaa ggctttttta tgaatatggg
    24661 ggatatgtta gttaaatccg gagatcctga aacgggaata aaaatataca ataatgccaa
    24721 attgactaaa aattacaata aatggccgta taaagacatg ttggagaaac gtattctgaa
    24781 tgcgaaagcc aatgttcaac attttaatca aaaatcaaat gaccccaatc agtcgattat
    24841 gtttaattcc ggatatggat gcgtggtttg tcatcaacgg taagtaccat ctgattattc
    24901 tatatcaggt ggcttattag attagtaaga atgtgaggtt tcaatttaaa ccccctgctt
    24961 gtgtttttgc aaagcgggca ggataaaagc gaaggaaagt gttatagttt taatttattt
    25021 cggcaaagaa tttaaaaaga acatggaaaa aattactatt tatcataatc ctcgatgctc
    25081 aaaatctaga caagcattgg aaatactgca aaacaaaggt tttgaaccca ttatcattga
    25141 atatcttaaa actcctcttg atctggaaca attgaaaaga ttacggactc acctagctct
    25201 tgaagactta gtgcgcacga atgaaaatgt ttttaaggaa ttgggtctgt ctctggctaa
    25261 tgaggcgcaa attttagaag ctatggtaaa tgaacctata ttaatgcaac gcccaattgt
    25321 cacatttaaa ggtaaggctg ttatcgggcg tccgcctgag aaagtcctgg agctgtttga
    25381 ttaatcttta ttgtacgata atataaattt aatcctgata ccatgactaa tctcactgtc
    25441 atggtaagga ataaaagcat ttgcaaaact tcagagagaa tagcttttta attgtgatgc
    25501 aaattgcctt aacacatgca gcccggattc ttcggcctgg ctacaccatt tttgtattaa
    25561 attaagaaga tccttattgg atagggacgt ttttaaccat atctgctgta ataattcgcg
    25621 gtaattatga accgcttgca agttgtcatg ttgcttaagt aatgttttca atcgcaactg
    25681 atcagcatgg gatagctgtt cgttcggttt cttgaataaa tggcgagcat tctttaaatc
    25741 ccgatttttt atgcggtatt gcatatcgcg cagagtagga aatataacca gcttgtaata
    25801 atcagatatc acttgaaagc gattaccaag tatcgctttt accgaatcta catctatatg
    25861 agatttattc ttgtcaatga tcagttttgg gggtaatttt tttactttgg caagctttaa
    25921 aaaagacaaa caacgtatgt aaaaccaacc caaatcaaat tcccaccatt taatggaaaa
    25981 tttggctgag gaggcgaagg tatgatgatt attatgcaat tcttcaccag caatcaataa
    26041 accccaggga aaaacattgg ttgaagaatc tgacgactca tgattgcgat aaccccaata
    26101 gtgccctatt ccattgacca cgccagcaac aagaggtatc cacatcattt ggattgccca
    26161 aagggtaagt ccaggaattc caaacaagaa aagattaagt gtgagcatta aaaatatgcc
    26221 tttgttcgca tggggagaat ataatttgcg ctctatccag tcgtttggag tgcccgagga
    26281 gtatttttta atcatgtctt tatctttaga ggcctctcga tataattctg gaacttgcca
    26341 aaatactttt tttaaagtaa atacctgagg gctatgtgga tccccttcca tgtcagtatt
    26401 ggcatgatgt ttccgatgaa tggctaccca ttctgccgtg gtcatcccgg tcgttaacca
    26461 aagccagaag cggaaaaaat ggcttacaag aggatgcaga gttaatgcgc ggtgtgtttg
    26521 ataacgatgt aagtaaatgg taacagcagt ggtggtgatg tgagtcagga caaaaccggc
    26581 caaaagatat ccccataaag tcatatttaa aaaaccaaac atcattcctc ctcttaggtg
    26641 cctgaaattg tgtaattggc aaaacgatat gtaagaatat ctttatatcc actaagtata
    26701 cactatttat ttttatctta gtggcattta aaaagctaat tatttacgcg cttttattaa
    26761 aagccgtcct ggattttctg ctgatattgc ccttatatcc tgcttttggc ggcgcaaatt
    26821 tttgaatttt ggctgagaca aaatctgaaa agttatgcaa aaactcaaaa tctttaattt
    26881 taatgcgctc cagtttttga ttgattaatt tttctataga cagcagcagc tttatttctt
    26941 ctgtgctgac caaggataca gccaatccag aggcgcctgc ccgtcctgtt cgtccaatcc
    27001 gatgaacgta gtcctcaggc acatgaggca ggtcaaaatt cactacacag gcaagtttct
    27061 cgatgtctat gccacgtgct gcgatgtctg ttgcaattaa tgtttgtact ttgcctgact
    27121 tgaaatcagc taaggctttt attcgttgag cctgtgattt gttgccatga atagcaaccg
    27181 aatatatttg ggattcggcc agttgcttaa ccagtttatt ggctccatgt ttggttcgag
    27241 aaaaaaccaa agtttgtccc cagttattct tatgaagtaa atgactcaga agggctaact
    27301 tatggtttct atctactgaa taaacagttt gttttatggt ttttaccgcg gtatttctcg
    27361 gtgcgatatc aatttcaacc gctttattca gtatatttct ggctaaagcg cgtacttcag
    27421 gggtaaaggt tgctgaaaaa agcaggttct gcctttttaa aggtaataat ttgataattt
    27481 tttttatatc atgaataaac cccatatcca gcattctatc cgcctcatcg agtaccaggg
    27541 tgtcaatctc atcaaattta acagcacgtt gctgatataa atccaataat cttcccggtg
    27601 ttgcaaccag tatctcaagg cctgagtcta attgtttaat ttggttgtgg ctttttactc
    27661 ctccgtaaat cacagctgag cgcagtgtta ggtatttgcc atattggatt atgctctcgt
    27721 ggacctggat ggctaattca cgtgtaggcg ttaaaatcag tactttaact cgattagggc
    27781 tggtttgagt ttgctgactg gctttttgca agataggcaa tacaaagctt gctgtttttc
    27841 ctgttcctgt ttgagcggaa ccaagtaaat catgcccatt taaaatgagc gggatggctt
    27901 ttaattgaat actggtaggg gtagtgtagc ctaactcact aaccgccctg tttagcggct
    27961 caatcagcgc taattgttta aaactcattg ttttccttat tgatatctat gggtattgtg
    28021 ggctctgagg ttaatcactc attattttgt ggggaaaatg aggcattaat ttagagggga
    28081 aaaataggaa ttttcaaagg ttttttgaaa gaattcatgc aatatttgga actattataa
    28141 cagttatttg caaatatgtc ttgtttattt tgcttaggct tggattgtta attaacagct
    28201 aacatgctaa gctcctcaga agatctaatt ctacgcacaa tactcttttc gatcgtttga
    28261 ttttttactc ttcttgcttt catccagatc attgttcgtt aatctattca ggagcaatga
    28321 tgaaacagaa aaaaatatat gttggtaatt taccatttgg tacgactgag gaagcattaa
    28381 gcattcaatt ttctcaatat ggaaaaatcg aggagatgtt cttaattaag gatcgattaa
    28441 caggacaaat gaagggattt ggttttataa cgttttctgc tcagcaggag gcggagtctg
    28501 ctttagagat gaatggtcag ccatttgatg gacgttcatt aaaagtatgc atggcacaga
    28561 aaaaaaccaa ttctgtttct cgtagccggt ggtaaaatag agtatttact taattccgat
    28621 gttatcgtat cgagaactca tcactacaaa taaattttta atctacgttg actcaacttt
    28681 tttagccctg agtgagccat ttattttctt gtgttttatc tatcccatat gcaaaaataa
    28741 caaccatagt atttggtgat aatagtcagc atgaaagcga acggtttttt tgatgagcaa
    28801 tcttccctta agaaaagtaa aattgggttg aatttagtat ggatgttctc acttggtcat
    28861 atttttctaa taacgctcag taatgttctg gttcaatatc catttgatat gatgggattt
    28921 cacacgacct ggggggcgtt cacttatcca gcaattttta ttttaactga tttgacaaca
    28981 aggatagcaa ccgctaataa ggcgcggaaa attattatgc tgagtatgac cccaggatta
    29041 atattgtcct atcttgttgc gagctatatt gaggcaggca ataatttgaa tgagagcggt
    29101 ctatccgttt tacacctcat gccattacgt atcgccctgg cttgttttat agcctacgtt
    29161 gttgggcaat tgctggatgt ggcagttttc caacgctata gaaatcggcc tgcctggtgg
    29221 ctggccccaa ctctatcggc ggttgcaggc aatttcatag atacagcatt attttttacc
    29281 atcgcgtttt atcactgctc caatccattt ttaagtcaga attggcctga aattgcgatg
    29341 gtcgatgtct tttttaaaat catgattagt ttaattgctt ttgttccggt ttatggtctg
    29401 gttttaagta ttcttggtat aaaaactacc aataaattaa tggtataaag gtatcttgat
    29461 accattttca aaataaggat taatgatgct gactggttta aggttgctta caaaagacct
    29521 caaaatttta aatggcaaat acattcagct agaacccatt accagccagc accgtgagga
    29581 gttacgaaaa gcagcaaatc atgaacaaat ttggcaatac atgccgcaaa aggcaacggg
    29641 caagttattt aattcctggt ttgatgattg tcttgagaaa atgtccataa gagaccaaac
    29701 tacttatgca gtgcgttgta aaaaagaagg agatctgaaa ggagccactt cattttacga
    29761 tattcaacca gaaaacaaac ggctggcttt aggctatagt tggtacattc ctaaagtatg
    29821 gggaacaacg acaaacccgg aatcaaaatt actcatgttg catcaggcgt ttgatgcctg
    29881 ggggattaat cgagtagaac taggtacaga ttctcgcaat attcattcct atcgtgctat
    29941 caaaaagctg ggtgcgacgg aggaaggtgt gttgcgccaa catatgattc ttcataatca
    30001 ggtgataacg gatactatta tgtttagtat tcttttctcg gagtggccgg cggtaaaaga
    30061 gcgattaata cagagattga actatgctgc aaccgataaa gaccacttgg ctgtctctat
    30121 atagtaatcc cttgttctct gggttacaca gctcaactca tgaaataatc agacacacaa
    30181 taaatagaat gaaaaaagat tggtattttt ctttaattga gtgaatattt ggttctacct
    30241 gcgagaaagg agtgctcaat gtacaacaaa atgtttaagc ctctggatac tgatccgatt
    30301 ttatatttca aaatgtacag taattatact gagggaaggg ttgatgattg ttgtgcattt
    30361 attttaatgc ccagtgggtt acaaagagat tgggtctgtt tgcaatcgat tcaatttgct
    30421 tttaataagt gtggtgacgt ccttgggatt aacattattt tttctggaaa tgagtcgaat
    30481 atccacaaaa aggttcgaga aacgatggaa gggatgctca agctgaagct tcaatatgga
    30541 agaggggaag agcttttcgt ttttgatgaa gaaaagaaaa catttcatct ggggatactg
    30601 cctggtaagg atacacaggc gtatttggag ggtattatcg cttttattca ggatagttat
    30661 cgcttgcaac cggactttgc ccaaaacatc aaggcacaac ttcttaataa ggaatatctg
    30721 gcacaggaat atagtcgttt gcgatggaag ccaccagaga aagaatctgt ttgtgtgctc
    30781 atgtaggttg tagaagcatt gtttccactt taaaaataga aaaatttgaa ttttatgggg
    30841 attattgcat tccattagct tggtttgcgt aatactctct tgacaactac aagattgaaa
    30901 gctcaatatt ctttatttac accaaggttc aggattttca ttgtatagga agcgatggct
    30961 cattttattg tgtgctttgt tgaataatgg ttgcctctgg cttgggtcag aatacaggaa
    31021 acctcatgtc aacaccccgc aaaaatggcc gcataaatat tcaatacaaa ctgagcaagc
    31081 tgcctattta cctgatctgc attggtggaa acagttcaat agcaaggagc tcaatgcttc
    31141 tatccaaaag gcattacaaa ataatcacca gattcacctc gctatggcaa atattgaatc
    31201 cgcacagggg caattgcagc aagtccagtt aagttggttg cctaatctca cagggcttgc
    31261 aggttacacc cagtttcccg ttttaggtaa tccggggact acggcaattg cctatccagc
    31321 ctacatcatt aatattttcc agcaatataa gcaacaaaaa agcgcgcaag ccatgcttga
    31381 agccagtatt tacgcgcaat attctgccag actggttgtg atagcccaga ctgcagccag
    31441 cttttttacc ttgattgctc agaatgaagc tttgcattta tacaataaac tgcttaagga
    31501 ttatcgaacc tatctcaaac tgactcaaag ccaatatcgc tcaggattaa tttcgcttga
    31561 caatatcact caaatcaaaa gtcgtatcca gcgaattgag gcacaaatca aggtggttca
    31621 gcataacatt gtggtgacta aaaacgcctt gcatttttta tttaatgaaa atcctggaga
    31681 tgtcgagatt aaaactctct ttgaaaatat cgatagtaat caattggtac cagggaattt
    31741 accggccagc gttctcagtg tgagacctga cattcatgag gcagaagcgt tgttaaaagc
    31801 agcgcatgcc gatgtgggtg cgataaccgc gaatctttta ccagggatta atttgggcgc
    31861 ttacctgggt gagggatcca atgtggatgg cgccattaaa ttagggcaag cctatttaaa
    31921 tggcccgata attgatttgc ctctatttgc tcaggttgat gtgagtaaag ctcgatataa
    31981 ggcaatctat atcaaatata ttaccactat ccgtaaggcc ttgcgcgatg ttgctaatga
    32041 cttgtctgcc tattcaactt ctagccagca attaaataat aatttatcgg ctttaagcga
    32101 tgaaaaacag caatgccatt tggcagaagt tcgttatcgt cacggaattg atgactattt
    32161 aaatttaata aaatgccaaa tcctgttaga cgaatttaag ttagtgataa accagaacaa
    32221 gctggaaaaa ctgctatcca tagtcacttt ataccaggat ttaggaggtg gttcccgtgg
    32281 gcattgatca gcaaaagacc gtccgtacct tgcgcttatc cctgacgtgt atttttcttt
    32341 ttctaattac ctggtactac caagtcccag aaagcgcatg gactttagtg accatatggt
    32401 ttgtcatgta tgaatattcc accgttggtg gcgtactgac aaaaagcttt ttgcgcttcg
    32461 caggcacggc tttgagtgcc atttatggaa tgatagttgt ttatttttgt gccaacaacc
    32521 cgttgattaa cattatggct ttagtacctg gtttgtttct ttacgcctat tttttcatgg
    32581 ggggagataa aacgtatatt ggtaccatag gggctgtaac gcttactatt gtattgctga
    32641 attataacga catagatacg gctgtattgc gggtattcaa tgtcattatc ggtgtcattg
    32701 gttctatgtt catgatccgg tttttttacc cccaatatgc aagagataaa gttttagaga
    32761 ttcagttgaa ctttattact caacttgcaa atcttttaga aagctatttg aatccaaccc
    32821 agtctttggc agctgtccag acaaagtatt tggattatga acgcaagatg cttgatggtt
    32881 ttactttata caatcgttat attggcgaag ccaaaataga aaccaagaaa gctccgtttt
    32941 tcatccccca ttccattgct gccatgcaac atttcaggcg tctgtttcgt ttgttcagtg
    33001 tgtttattta ttatttatct actgaggaaa ttcgatcgga tccatgggta tgtgatcaat
    33061 taagtaaact tctgcgtaat ttacagtcac tgcaacgaaa attgctgcaa caggatgcgg
    33121 ggcccatagg gggagacgtt gaggttgcag agccagaaga agaaatcgtt atagaaacac
    33181 ctaatattga aaataaaata gcaacagaag ctattgtcaa taatatgcag aaagaaatcg
    33241 ctttgcttga tactgaaatt aaggaaataa tattaattta cgatgtttat gatatcaggt
    33301 tgaatgagat gtaaagactc attccaatat cttgggaagg gttcaataga aatgaggatg
    33361 aaaaagacac atgagtgaca aacccaaagc tggatttcct gtaattattt tattatgcgt
    33421 gtttctattc attctgattt atcattactc gtatttattt ccttttacaa acaatgcatt
    33481 tgttgttgcg aatgttcgtc cagttgctgc caatgtaaaa ggttatatca ccaatattta
    33541 tgttaaaaat gaacaggaag taaaaaaagg ccaaccatta tttaccgtat tcaaagcccc
    33601 ctatgaattg gcctacagga aagctgtgag ccatgttcaa gaggcgaaag cccaattatt
    33661 gttattcaat aaacaagttg agaaaacgaa atatctgctg caagcacaaa aagagcttta
    33721 tgaaaaattc cgttttgatt atgaacataa ttattctgcc tcgcgcgatc acgcagtttc
    33781 taaactgacc gtcaatacga tgttaaaaga aaaaaatgcg gcactaagca aattaaaagc
    33841 attggaaaaa gagttggagg tcaaccagca acaagtcatt gtgcaaaaaa agaaaattga
    33901 ctctttaatt gcggtgatga agaatgccaa aatcgatttg gatgaaacca cagtttatgc
    33961 caaacaaaat ggggcagttc aggatatgtt tgttgcattg ggaaccccca tcaaaacccg
    34021 aaagcctgtc tttgccatag cggataccga taccttgttt atccaggcaa atttcaacga
    34081 aacggattta agaagagtac agccagggga taaagtttct attttcccgc gaatgtattt
    34141 tggatctaaa atttatcatg gagtgattct ttcaagaaac tgggctgcaa gccgcctgga
    34201 aacccatcgg gcaacgcaaa tacaaattgt tcgcaatagc gaaagcaact ggtttttatt
    34261 gcctcagcgc ctgccagtac aaattcaaat aaccgactat gacccggtgc attacccgtt
    34321 aagtataggc gctagcgcct atgtgtatat ccatactcat taaaattatg gaaggtgttg
    34381 aaatcaagag tgcaatatat tctgtttttt ttctatttcc agtattaatt tttagctgat
    34441 aatttgactg tgaccatttt ttagactagc tttagcttaa taagctgaac aaaaattgat
    34501 caaaatgtga atttcatagt ttaatgacaa ggaggtcata tgaaaattcc atttgaaggg
    34561 aaatggcgtg cgaccattac caaacgtgag gctggtttta gtcaacgtgt cgtggttgga
    34621 agcgcaacca gcgggaatgg cagttacaat ggtgttgttg gcaacagctt tgttttcgaa
    34681 gacggttggg ttgaacttca gtggaataac aacgcaggtt caggctggca ggaaagcgct
    34741 gtcattagtt ctgtgggaat gacgagtccg ctggttgttg taaaatttgt ttcagccgat
    34801 gacaattttc caaatcaacg agacggcgat tatgatgatt tgcaagtccg ttttgaacat
    34861 cttgatgctc cttttgaagt aacacaaaga ccttacgctc ttgatagggg ctcccttgcc
    34921 atgtttcctg acggcatttt tgatgcgagc caggggattc aatacatggg agtacgaatt
    34981 aaaaacacct ggttttttga ttggcaaagt aattttccgg caacaggaat gaaaattggt
    35041 attgcgccag tgagtcgttc cgccttgtct gctgctggta ttatggtgat tgatagttgg
    35101 acgccacagg aacaagaagg tttggggcaa atcatggatg gtggctttgt gagagttcct
    35161 gatataaaaa ttaatgagga aacaacaatt tacttcaagc tggatgtcag taatgccaat
    35221 ccctccaaac ctgaaatcgg ttttgtggca cagcgcgatg cttatgatcc acgctatgat
    35281 gaaccaacac gaatagttga taaaaaaatt ttcatcagtc gctccagtta caatcctgca
    35341 accagggaat tggtgactgc gatccctgaa ggtactttgt acctgaaact taataaaatt
    35401 gccattgatc gcaaaggcgc tacaaaagca gctcaggaat tgaagaaatg ccttaaacag
    35461 catggaggtg gcataaaagg gatgtcaaaa tggctgcata agctaagccg tggtttttgg
    35521 caaaatagta aagacaagga acgttggtgc aaggagcaag gcaatgatgc attacgtaag
    35581 cttttaaaac agcttttaga tggaaaggac attgatattt gtcatcttaa ggctattttg
    35641 gatcaatgtt gtgaacgccc aggcggagat tgcgagtgtt gtccttgtgg tgatggagat
    35701 ggcaggccgg gtggttggga tgatggtacc ggggttgatg gctggtgccg agtgaaacct
    35761 gtattctggt taccgctgga ttttgaatat aaggtagtcc ctaacccggc ttacattggc
    35821 cagtttggtc ctcttgcttt cgaggatccc tggtggaaag tagttttaat catcttggcg
    35881 attatactgg ctatcgcttc agtcatttat gattatgttt atgcatcaga agatgaccaa
    35941 tacattattg ggcaggttgt ccgtaatggg gatgctccaa tcaatctggt tgatgcggca
    36001 gtgagtaatc ttaatggctc tcgtggagtg gatctgggac aactggatgc ccagggtaat
    36061 gatattaaca acggcagccc cattactgta ttagacagta ttattcagct cgatcgtaca
    36121 gcagccggaa gttattttgg tacgcttgac gctgttttgg gtaatgtcgt ctggaagtca
    36181 ggggctacca gtgcaacaac gagaggattt atcagtactc tgggaacttc cgtcagcata
    36241 ccctatgacg agcatgatac gctttcagat accgttactt acattaacga agtggttatc
    36301 agcgaacttg ccgcgattcc gcaaacactc tcagatcctg gtgactcggg atccgtatgg
    36361 gttgatctgg caacagcgcg tccagttgct ttaaattacg gcagcccaac agactccagt
    36421 gataatcggg cttttgctaa tccgatacgc tctgttattg acgtgcttaa cttacggttt
    36481 taatgaaaag gaagtaagaa aatgaaaagg gaattttttc aaaaactcga caagattctt
    36541 gatattgctt ccgaacataa gcaaatgttg ttgcaatatc ctgatgtggt catggtgggt
    36601 gtgggacctg agcgtcgcaa gggaaaaatt acaggggagc ctgcgatcat tgttacggta
    36661 cgtaaaaagc gctcatccaa tgaattaaag aaacggggag aaaagccctt acctcagaca
    36721 attaagggaa ttcctgttga tgtgattgag cttggcaaag ccgtggaagc tcccgaaatt
    36781 atcgctgttc aggaaaaagc aaaaaaaaca attagtaaaa ttcgggcaaa atggttacaa
    36841 acaccaaata ttacagcaat aggatatggc tacaaagaga aaggagggga aatcgatttt
    36901 aacaccattg ccatccagtt ttttgtcaaa aaaaaatttc ctatcgccga gctgcaaaac
    36961 cagcaaataa cccccattcc tgaaaaaatt aatggggtga gtactgacgt tattcagtta
    37021 tctcccatcc gcccggctgc ggcttccggt tccagaggag atcgccatga tccgctcaaa
    37081 ggaggtgttg cgattggagt aggaagcaag ccatttcatt acggcactta tggtgccaca
    37141 gtatttgata gaaccactgg cgaacgcctc tttcttagca atcaacatgt tcttgatgcc
    37201 tctcctggaa cagacaccat acagccttcg ccagtcttat tggatgattc agtggaagta
    37261 ggatttcaat tggatttttg cttgcctatc cattttatca ggctggatac tccaaatact
    37321 actgttggca ctgtgctggc tggggctgcc gtagctgcag ctgttgccgc tgctttaagt
    37381 gatgaaattg atccgacaag gcgaggtcag gaagcaacaa tgcctgcgac aggatctaaa
    37441 acattatttg aaacccaaaa agttaaaatg gattatcctg aattgcccat tccaggaaca
    37501 ccgtttaaag taaagacagc ttgggattat gaacgccaca ccgatgcggg tattaagaca
    37561 ttcagtgtca gtgaagaaaa aaagaatccc catgttttac gcgataaatt attaattaca
    37621 gacaaaaaac tttatcatcc tggggatact attcgtattt ttggtttaat cttgctggag
    37681 gaatgcgcac ctgcatctca gaccagggac gatcgtcaac ccattagtcc ccgggaattg
    37741 gaagatataa cccattatcc taatttggct tcaagtatca atcttgatct ggtagccacg
    37801 atggattctg acattgcctc ttcgccagcg cgtcgtacga atacaagggc tgctgtcatt
    37861 aaccccaaac ggtgccgttg tgatcgctat caccctgtcg ccattctgac accaacgacg
    37921 gaggatcgtg cttttccagt tgttttgcgt gaaccagtct ttgcgcaaaa aaaccagatt
    37981 tttcaagatt tgctaaccgt agtgaagcaa cgagatgatg aaaagctgct ggagcgggtg
    38041 tttgttctgg ttcgttatgg ttgtatatat accggcacat tacgggtaaa taacattcca
    38101 gctggtccat ggaaacattt tttctatgtt caaacagtga acatcgcaac aagtgatatg
    38161 aagccgctgc tggcggcgca aattattggc ggtttacctg tttccgaaaa tgctaaagcg
    38221 gacctggata tagcctgtgg cccactcacc tgggaagatg gtgagtttga tattgagttg
    38281 atatagagcg tgctgcaggg ctgattcata ttggccaata gccatggaat aatatgagtt
    38341 gtattgataa gtaatacctt aaaatcaaat tattttcata agctataaaa tagtgctatg
    38401 cttttgccgc caaaatggta cgaagactat taagtcacat tagatacgtt ttattttgaa
    38461 aggaatactc tatgtttggt ttttttagtg attacaaaca atacatcact ctgagaaatt
    38521 ttgctgtcgt ttataacggg cttacaggct tggcagtatt gtatagcttg tggagtaatc
    38581 ctgaggctga tccctccgaa tacgccattg atatctctat tcacgcgctg actgctatca
    38641 ctttaatgtg taaacaagcc cccgaatcag ttaaagcagt tgctatggca ttaaatactt
    38701 ataggggatt tgatgcctta ttcaaggcta tcacctcact tccttctaca atcccaggta
    38761 tcgccaatgc tgttgatgtc cttaatcacc gttttaattt caaggagctt gaaaaacttg
    38821 gtaatgagga aactgtagaa accagatcag cagttcagca tacgatgtaa agtctggatc
    38881 gtcttttccg gtagaagatg gatttatcag ccattttcta tcgggttctc ttacaccaat
    38941 ttcatgctaa atagggtgtg ttgacaattg gctcccaacg cctacgtgcc gcgacttgtt
    39001 cgcggcatcc atgagct
//
LOCUS       DACVWI010000009        37508 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.009, whole genome shotgun sequence.
ACCESSION   DACVWI010000009 DACVWI010000000
VERSION     DACVWI010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 37508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37508
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.009"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            3..548
                     /locus_tag="JBH85_01560"
     CDS             3..548
                     /locus_tag="JBH85_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HAU0944874.1"
                     /translation="MKLLFDFFPIVLFFIVYKFFGIYTATAVAMVASLTQVAFYRLKF
                     QHYEKMHLFSLAIIMVLGGATLFFQNPWFIKWKPTGIYWLSALVFYGSSYIGSKPLIQ
                     KMMEANINLTTKIWYRLNLAWTLFFIVMGALNLYVAYHYDTDVWVNFKLFGGVGFTLL
                     FVLIQAFYLTKHTDEKSFEKQ"
     gene            609..1286
                     /locus_tag="JBH85_01565"
     CDS             609..1286
                     /locus_tag="JBH85_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0944875.1"
                     /translation="MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSES
                     FELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTARESIEDRVKGLDSGADDYLIKP
                     FDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQK
                     LLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEK
                     NDSVLLS"
     gene            1283..2698
                     /locus_tag="JBH85_01570"
     CDS             1283..2698
                     /locus_tag="JBH85_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HAU0944876.1"
                     /translation="MKSSIRKFLLINLLLAITITTTLTAIGNYYLDQKDIQDHLDTLM
                     AISALSYQALLGDDLHQRPLAKIQNALESIPQKINTYYQKRYLNDEPQENYLDKFNFQ
                     VWTNGGKLLLHSPTAPKIPLTAETDGFSDKRISNQDWRVFTTYNDKAGIRTVLAERYD
                     TRNELGHRIAQDDLYIMLLTFPLSGLLIWIIIGRGLDSLDRVAEEVANRAPSHLEPVD
                     LQEVPEEIKPVIDELNKLFFRLKEGFEREKRFAADAAHELRTPLAALKAQAQVALNSN
                     DIEEKNQALQKLIASVNRSTHIVQQLLTMSKLVPEATELHEQDEVNLSKLTREILAML
                     APSAVEKQIELEFETDEKMPKIYGNPTALGILIRNLVDNSIRYSMENGRVIVRLLKHN
                     NEIILEVCDNGPGIPPELQKRVFERFFRVLGNKSPGSGLGLAIVQQICELHGGRVVLD
                     SPKIGTGLIVRVYLPIKTKPK"
     gene            2982..4568
                     /gene="lem8"
                     /locus_tag="JBH85_01575"
     CDS             2982..4568
                     /gene="lem8"
                     /locus_tag="JBH85_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem8"
                     /protein_id="HAU0944877.1"
                     /translation="MPQILNALAAVIEADLVKLNPEQKEIVDKYSDKLLNVQYKAHQP
                     RTFELAVKTMKEQLEQLSTSLKKINSEMAPDKDKRRHEMIQKIESDLKLIESCINGDF
                     EKNYQNLKKEFLQFLHEADSKDPFLKKIHGLLEQDNPSILYLIEQELESSYYKDKYSQ
                     QFNQLILLMKLKVSHIPNPVVTPNLLQDVSLLQLEGEIEKQRMIAIIDGQEPLARALK
                     YLSIGCTTTAARTKELQKTIVQHGTNLQAYRHQEKCRELGGRIVLHCSQAMLPGMGLK
                     SGMCHGLARHWANDVIKKDRFMGFRGNQEVSIQPTKATDKILQAIPSFNDFVRLNPKI
                     YETQQSQKEHIFLEYEDTVGSEPEKQFEEFTDRIMSELDKYGKSATFVSYANSSSGHV
                     VAIHKRTKPTPQGFIIDYFDANAGWMQFKDDKSFQEFLTYYLNDRHAKEKLKSIAFET
                     LCYPSSYTHMLDKLCEKAPQPTPQRQRAQSLSAETERNTPQIKSQISEKTEKTEKTEK
                     TEKTEKTENEQSRNTRGFPI"
     gene            complement(4601..4921)
                     /locus_tag="JBH85_01580"
     CDS             complement(4601..4921)
                     /locus_tag="JBH85_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944878.1"
                     /translation="MKRMIGFMVSVMLTFAVNAADSQVNTHKHQTDKGKVTPGMSIQR
                     NTEQSTAITADAASSNTTEKVTSQQMKEHKKSVKEANYNAQKKEEEAKTATDTQKQEA
                     DSPS"
     gene            complement(4971..5570)
                     /gene="ruvA"
                     /locus_tag="JBH85_01585"
     CDS             complement(4971..5570)
                     /gene="ruvA"
                     /locus_tag="JBH85_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HAU0944879.1"
                     /translation="MIGWLHGQIIDKHQPGKLVLDVNGVGYDVETSLNTFFQIENGNQ
                     PVGLHIHTIVREDALLLYGFLDKEERSLFRSLIKVNGVGPKLAMTVLSSISPKEFIQC
                     IHQENAALLTKLPGIGKKTAERLVVEMRDSIKQFDGSVSDTFQKQAGSTHSQQEAISA
                     LEALGYKPQEAWKVMNKIDNGNKSCEQLIREALQILSSR"
     gene            complement(5567..6091)
                     /gene="ruvC"
                     /locus_tag="JBH85_01590"
     CDS             complement(5567..6091)
                     /gene="ruvC"
                     /locus_tag="JBH85_01590"
                     /EC_number="3.1.22.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HAU0944880.1"
                     /translation="MTIILGIDPGSRVTGYGLIKESDRKIAYIDSGCIRTSNDTELSH
                     KLLQIYDGICELMDHYSPTEVAIEQIFMHNNPNSALKLGHARGVAMVAAASHRAKIFE
                     YSAREIKQSVVGYGAAEKDQVSHMVVELLQLNRAPQKDAADALAIAICHSHMRNGLSK
                     LIGSRGTKRRRMRL"
     gene            complement(6091..6834)
                     /locus_tag="JBH85_01595"
     CDS             complement(6091..6834)
                     /locus_tag="JBH85_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAU0944881.1"
                     /translation="MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDES
                     SNPRLRDAVKKALNANMKRDTIDNAVKRGVGGVDGEAMIAMRYEGYGPGGVAILVDCL
                     SDNKNRTVSEVRHAFSKHGGNLGTDGSVSYLFTNQGEILMASNQPEDKVMEIAIDAGA
                     SDVAVEDGQIEIITPVEAYHTVLNALQDAGLEVEQSHLTMRAQTLVPINDETAESLIK
                     LIDMLEDLDDVQEVYSNAEFSEKILESMN"
     gene            6980..8230
                     /locus_tag="JBH85_01600"
     CDS             6980..8230
                     /locus_tag="JBH85_01600"
                     /EC_number="1.13.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HAU0944882.1"
                     /translation="MYLQGFGNYHHSEAVKGALPPNQNSPQHCSLGLYAEQLSGTAFT
                     RPRHNNLRSWLYRILPTVTQGTYYPYEFNIMQPFVDELSPNAMRWSPLYNSSQIKCDF
                     VEGLFHIAGSPLVNTYTYYCNHSMSDKYFANNDGELLFVPYAGEIHLHTEFGKLMLSS
                     GSIAVIPRGVKFKVEVISKEAKGYLCENSGNPLTLPQLGPIGANGLANPRHFQYPVAA
                     FENSGSEHTIICKNQKKLWFTVCNHSPLNVVAWHGNYAPYCYDLSLFNTINTVSFDHP
                     DPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYD
                     AKKEGFIPGGISIHNCMTPHGPDYESYEIAASQDLKPNYINSLAFMFETKDYWQVTEQ
                     AYRHPSRQMDYLNCWQGFKIEFSQ"
     gene            complement(8333..9412)
                     /gene="rpoS"
                     /locus_tag="JBH85_01605"
     CDS             complement(8333..9412)
                     /gene="rpoS"
                     /locus_tag="JBH85_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HAU0944883.1"
                     /translation="MLRSKKLFQGIAKHIGDTMQDDEEPIKDKEFKEEEWSEPDDESL
                     LSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGFSPLL
                     TAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMK
                     SVEKFDPKRGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQ
                     KLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIGFDETKSLLDTIADENSLN
                     PAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVR
                     QIQVEALKTLRTLLERVGLTQEDLF"
     gene            complement(9444..10187)
                     /locus_tag="JBH85_01610"
     CDS             complement(9444..10187)
                     /locus_tag="JBH85_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HAU0944884.1"
                     /translation="MMRLFRKQLICIFFILSAAGCGTRSDLAPVTELKWQPYSKYQKF
                     HTVRSGETLYAIAFRYDTDYRRLAINNHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPR
                     ANLHITHKPKQKTIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKV
                     RASASGVVAYAGSGLAGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVNAGQVIAEAG
                     LIDRSYWGVHFEIRRAGVPVNPLNYLQKG"
     gene            complement(10206..10961)
                     /gene="surE"
                     /locus_tag="JBH85_01615"
     CDS             complement(10206..10961)
                     /gene="surE"
                     /locus_tag="JBH85_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HAU0944885.1"
                     /translation="MKILVSNDDGVLAPGIKILANELSTLGEVKVVAPDRNRSGASNS
                     LTLTQPLRVKQLDNGYYSVDGTPTDCVHLALTGFLEPTDIVVSGINEGANLGDDVLYS
                     GTVAAAMEGRYLGLPAIAISMVGDNIQHYETAAIIAKQLVIKLSANKLPSQTILNVNV
                     PDLPLNQIRGLQVTRLGTRHSAEPIIKEYDPRGRPIYWVGPPGIEADAGAGTDFFAIK
                     TGHVSITPLHLDMTHYKLFDHLSNLLNEICIEN"
     gene            complement(10964..11347)
                     /locus_tag="JBH85_01620"
     CDS             complement(10964..11347)
                     /locus_tag="JBH85_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944886.1"
                     /translation="MNKYLVIILITLGLVSCQFKKDESYYRSHPSELQNALKLCPGTQ
                     PDGLSCQQLEAIGRRMNGLAYQLQYNPQEFGNKILALQEVIANQQREIQSKKDNAELQ
                     DSLKRNQEDLAYYLAVVKWLESPES"
     gene            11427..13151
                     /locus_tag="JBH85_01625"
     CDS             11427..13151
                     /locus_tag="JBH85_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HAU0944887.1"
                     /translation="MLDFSLNRDPQTGELYIETSLCGKPLLTTPQLNKGTAFTQEERK
                     DFGLLGKLPHRVETLDEQVKRAYLQYSSYTTRLQQHIYLNNLHDKNQIVFYKLLSRHL
                     GEMLPIIYTPIVGAAAKRFSHEYRQPRGLYIAHSDKNQLEEIINNRSNPDIDLVVVTD
                     GEGVLGIGDQGIGGMDIPVAKLMVYSLCGGIDPTRTLPIFLDVGTNNQELLNDPMYLG
                     CRHPRIKSSEYDDFIKTFVNEIHKQFPNAFLHWEDFGRGNARRILDQFQDELCTFNDD
                     IQGTGAVTLAAILAACDVTGLPLHEHRIVVFGAGSAGTGISDQIVDAMVKSGLSLTDA
                     YDRFWLIDKQGLLLATDQELTDAQKPYARNPIDIQSWEINNKQHPSFTDTIRHVKPTI
                     LIGCSAQTGAFSQDIVETMSTSCERPIIFPLSNPDEKCEAQPSDILAWSKGRALIATG
                     TAFAPIEYQNRMVQIAQCNNALVFPGIGLGVLAVSASRLTKDMILAAAQTLSKFAPSK
                     KDSFLPLLPSLDNAQIVAKEIAIAVAQCAIDSGYAQKNQDKELPRLIDELFWEPRYLP
                     FRKKGWSE"
     gene            complement(13199..13570)
                     /locus_tag="JBH85_01630"
     CDS             complement(13199..13570)
                     /locus_tag="JBH85_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease inhibitor I42 family protein"
                     /protein_id="HAU0944888.1"
                     /translation="MKKLFSGLLMGFSALAYANNEVVINVSSKNPSFVVSLAANPTTG
                     YQWSVVEFDKNLLTLSNSIYEKPKTNLIGAGGKMLFTFNLNKGKTYPAQTKMVFKYAR
                     SWEPESGTIKNVTINFANPSD"
     gene            complement(13607..13924)
                     /locus_tag="JBH85_01635"
     CDS             complement(13607..13924)
                     /locus_tag="JBH85_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2845 domain-containing protein"
                     /protein_id="HAU0944889.1"
                     /translation="MIIRNYLLAIVFLMIVYPNAYAMRCGDKLVYEGDSKYTVLSKCG
                     EPLDKLVYEENVPLYNAAGYQIGYGTNTVETWIYQKSPVDFQYELIFDYGKLKQINVN
                     RNP"
     gene            complement(14007..15833)
                     /locus_tag="JBH85_01640"
     CDS             complement(14007..15833)
                     /locus_tag="JBH85_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0944890.1"
                     /translation="MKVWFMNSDNKKSEELPKTLGRFFWHFIKKQPLAFTVFFVAPIA
                     MVLENNAIPYSLKMIIDALGMHSREENIFSVVAPALWLGGGAWFVLIVILRLQNWWQG
                     YVIPRFQADVRMSVMEHLSRQSYHYFSNQMAGGLANKVNDLPRALDSIFNIITWYAIA
                     AFASIIVALILMCTINYWFAVILLSWIIFQLYISYRLSKKVDQYAKENAEDKSQLSGK
                     IVDSLSNASVVKLFARSRDELAYISASQNMEVQSNKKLTIYMNIFRLYLDIPVTVMLV
                     AMVYFLLTFWNKKLITTGDLVFIFNVSFSIMTQIWYLCHAIAEFFREIGIARQAIALL
                     SAPIEVQDVPDAKPLNVKEGKIEFDSVTFHYNQGKKVFENKSVIIKPKQRVGLVGFSG
                     SGKTTFIHLILRLFNVESGKILIDGQDISLVTQDSLRSAISLIPQDTTLFHRTLMENI
                     RYGNPDATDDEVVMASKQACCDDFISLLPDGYNTLVGERGIKLSGGQRQRVAIARAIL
                     KNTKILILDEATSQLDSLTEEAIQNSLWQLMESKTTIVIAHRLSTLLHMDRILVFEAG
                     KIIEDGSHEELLAKDGLYKSMWDAQVGGFLPESDRDRDNWDE"
     gene            16054..17685
                     /locus_tag="JBH85_01645"
     CDS             16054..17685
                     /locus_tag="JBH85_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HAU0944891.1"
                     /translation="MEHETMEFDVIIVGAGPSGLSAAIKLKQLALASQKEITICILEK
                     GAQVGAHILSGAVLEPRSLKELLPDNWQQAPLDTPVNKDLFYFLTQNKSFKLPTPKPM
                     HNEGNFIISLGELCKFLAEQAESLGCEIYPGFAAAEILYNDKNQVIGVATGDVGIDRQ
                     GKKTDNYQPGMHLLAKQTLFAEGCRGQLSQTLMSRYHLRDHSQPQTYGIGIKEIWQVD
                     ASRHEPGKVIHTVGWPLDHATYGGSFLYHLSEQRVAIGFVVGLDYKNPWLNPFGEFQR
                     FKTHPLIKSVLTGGERIGYGARALNEGGWQSLPKLTFPGGALIGDAAGFLNVPKIKGI
                     HTAMQSGMLAAQACFDALSEEKSGQFELSAYPKKINQSWLKQELYAVRNIRPGFKYGL
                     FPGLINAAFETYVTRGYSPWTLKNHSDYKSLIPADKAKKINYPKPDGVLTFDKLSSVF
                     LSNTFHEENQPCHLKLKQPKLAIEVNLNQYASPESRYCPAAVYEIIEDVEKGPRLQIN
                     AQNCIHCKTCDIKDPRQNIVWQAPEGGGGPNYSGM"
     gene            17856..18310
                     /locus_tag="JBH85_01650"
                     /pseudo
     CDS             17856..18310
                     /locus_tag="JBH85_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213588.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
     gene            complement(18388..18843)
                     /locus_tag="JBH85_01655"
     CDS             complement(18388..18843)
                     /locus_tag="JBH85_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HAU0944892.1"
                     /translation="MKQIKGILLSIISLSFLPFLVFASDASISLVGVQGYDLVSYHQK
                     NGPVRGSGNHTAYHNGVAYLFATDENKKVFQANPEKYLPAYGGYCAFAVSVGRKVVSD
                     PLAWKIVDGILYLNLNKQVQEFWSKDIPGNIKKGNIQWEKIKDIDPQKI"
     gene            complement(18891..19955)
                     /locus_tag="JBH85_01660"
     CDS             complement(18891..19955)
                     /locus_tag="JBH85_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1273 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944893.1"
                     /translation="MKIFKGLKKNTGFRKQSNTQKISNSSIQSSITSLSGDASQPRFD
                     FFPINNRDVLLKSPSFNHIGSEFQPMVSKRDVNSISITLPIKHNVHRNHNSNLPVDSI
                     SVVDSSNQQDHISYLHICFTHEEGKWYLFLKCFTTPDVFNYDFAPLLKILHKPDIRTY
                     PMSFGYPGVIDRTELIDKDRKIYARQFIIHGPNDEAKILQDVHDFNLNCLRRFEELTY
                     GRDNSAYRNSQALGRILHKIVTAYQEVTVNEYDIALNRLKIVFQDQVFQNDPQICLSL
                     THIVNALIVLSQKKELNNKGIEMDEHQLHLILKELAKHEGKKFKNNLWFPVGTVETIS
                     QEVDELFDLKQTTAAASIMS"
     gene            20287..20363
                     /locus_tag="JBH85_01665"
     tRNA            20287..20363
                     /locus_tag="JBH85_01665"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:20321..20323,aa:Arg,seq:cct)
     gene            complement(20487..22283)
                     /gene="vpdB"
                     /locus_tag="JBH85_01670"
     CDS             complement(20487..22283)
                     /gene="vpdB"
                     /locus_tag="JBH85_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector VpdB"
                     /protein_id="HAU0944894.1"
                     /translation="MKTVNSQNGTSAEPSVNLGKLSTAKNLVFRGGGSKGIAYVGALQ
                     SLSEQGVLENIENVAGSSAGAMTAAIVACGGSADLMEYFCSANSLEDFVDNPLTRKLA
                     KLFMDKKGFLAGILIELFKSNKMLPSDSSAAYTSLSHEQTDKQLDAKSSLAEAKLVTK
                     PSKLTFPVASKGTKLVEAMEHVMRMAIFTHFPESLDNELKNVREKLNAIEDKGSAEYI
                     NLAKRQQIVEDTQKIINGLHDPNFDLTFGHLHTLHQYDPQRFKELHITGTDENGELRI
                     FSHEKDADMPVSIAVRISASLPGVFDPVIYEGRKYIDGGAANNLPVNIFFNKEEAYTP
                     GVVTTIGVSCENQLDITEKEFKNPSFMERIKEYLGDFVKKILCKLDVEGAVKEQKREM
                     LKYIDNGNLFVMVAPPISVTTAQMHINDKEKEGVIEVGKAFCDMQLKSMIDADYKPQP
                     FDEKAAKILTNSSQQQEQLKEKTMLFKSRLQSFKQGEGVKPWSQHVENAIDRLMSLKG
                     EITKAQVDLGRTWFDIKSENADPAVRLKKFNDAFLASPLAKPSSNQQEINFSKEIRKE
                     IDLLKGLPGLNNTSSHCTEEFNEQSTPSLYRA"
     gene            complement(22478..23713)
                     /gene="flgL"
                     /locus_tag="JBH85_01675"
     CDS             complement(22478..23713)
                     /gene="flgL"
                     /locus_tag="JBH85_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HAU0944895.1"
                     /translation="MRISTNQIYQRGLDNLLTQQERLARLQDQQASGIRVRTPSDDPV
                     ASAQIELIKQRINNIELFQNNRQAADSALRLEEGILSNAVNSLHRLREIQIQAGNPSL
                     SEEDRKTLAVEAQALLNQLLDYANTKDSNGSYMFSGSKSLTQPVSLNLSGQYVYNGDS
                     TQRFQAVTTSLLVAVNDTGDNVFMRIPSGNGRFAIRETLTPNTGTASVSSGSVTNEAA
                     FVPDNYTMTFALNSQGNLVVMVSGTLSGNVIPPSGLPDDAPLYQEGSAIGFNGMEMVV
                     SGLPKAGDSFSISPAKNESIFSTVQRMINNLNKPYTSSVEKAATQTENNQLLAQIDSA
                     LGHILSVQSDLGARLNQLETAEKANNDYLDISAATLKKLREIDPVAVATELNLQLVNL
                     QAAQLSFTRIQGLSLFNFL"
     gene            complement(23717..25666)
                     /gene="flgK"
                     /locus_tag="JBH85_01680"
     CDS             complement(23717..25666)
                     /gene="flgK"
                     /locus_tag="JBH85_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HAU0944896.1"
                     /translation="MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIT
                     SNRYAGSYIGAGVSVASIYRNVDQFANAQVRSTLSYRTQYDAFYNQAIQIDKLLSQDG
                     SSISVPLQTFFDSIGQLNSTPDNIATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQ
                     LTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQLSGYTDLSIFDQGDGTI
                     SVGIASGDMLVAGTQQRDLLVGTGKDSIFGTRIFLSSGGNNQVDITDRLTTGMLGGLI
                     DYEKNVLGQASQLIGQMAIGLAQTFNTQHKLGMDMNSQIGKDFFTDFNSPGQMLKRST
                     ASADNSGTAVLSVNISDISQVKLSDYDLIISDTGANELRLIRKSDGTSTTLTWSSSPP
                     APPAGQVVIDGMTITVNDLSQLANNDHYTLTPTRGAARDFALEIKDAYEIALASPVKT
                     TASLNNTGQGQIILGPVLNTASVNKQFRIDFISDTQYNLVNVTDSTTAGPFAFIPNTN
                     NVIQIPDGITPSYSVVLSGIPKSGDQFTTDYNTGGFGDNRNGLILGNIQQNKIFSNGS
                     ETLFDRYGNLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQ
                     QAYQAAGKLMEISNQIMNLLFDIMR"
     gene            complement(25716..26600)
                     /locus_tag="JBH85_01685"
     CDS             complement(25716..26600)
                     /locus_tag="JBH85_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
                     /protein_id="HAU0944897.1"
                     /translation="MMDMTIQSIATSDFQGLNELKIQAKNNAKEALPEVAKQFEGIFL
                     QSMLKSMRMGQHFLDESSPFSGKNEATFQEMLDAQYASTIAESKGIGLAALLAKQLEN
                     SVGDKANKPVNSSTEVNNTKVTNSEESLSVVDDFVKSVWPTAKQAASLIGLDPKLLVA
                     QAALETGWGRFVTRDADGSSSNNLFNIKTGSHSEVESIQVKTTEYIADTPIKINASFR
                     KYPSIEHSFHDYVSLIKGSERYQMALANAENPEIFVSELNKAGYATDPNYSNKILSIY
                     HGDELNQAIQRCESFEQS"
     gene            complement(26603..27787)
                     /locus_tag="JBH85_01690"
     CDS             complement(26603..27787)
                     /locus_tag="JBH85_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HAU0944898.1"
                     /translation="MVIKDFMGAFIPDLIGNYRDYKRQGIKMRRMLVIRWILAIHLIA
                     TQVFAERIKDIATLAGVRVNQLVGYGLVVGLSGTGDKTGTKFTEDSFANMLTQLGINI
                     PPGVRLNSKNIAAVMVTANLSSFMKKGQTMDVNISSIGDSKSLLGGTLLLTPLKGADG
                     RVYAMSQGNVVVSGISASGSDGSSVTVNVPSGGRIPNGATIEADIPNPFYYSNSLTYN
                     LHNPDFTTAKRMSDAINELMGPGTAKAIDAGSVVVTAPKKLSQRVDYVSVLENIEFKP
                     GEAMAKIIINARTGTVVISSNVIVKSAAVSHGNLVVSITETPVISQPNAFASGRTVST
                     QQSQVNIQQKNNRAFILPKGTTLKDIVRGINAVGATPADVISILEALQQAGALSATLI
                     VI"
     gene            complement(27745..28437)
                     /gene="flgH"
                     /locus_tag="JBH85_01695"
     CDS             complement(27745..28437)
                     /gene="flgH"
                     /locus_tag="JBH85_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HAU0944899.1"
                     /translation="MNRLNIAVSCLATALLFGCEALHPPAPGDNPDYAPTYPVTPDPK
                     ELRKVSGAIYSSETALPLFETPRARHPGDILTVYLIEKTDAQKNATTTQRKNDTTKIT
                     NKLFLGRPISLGSGYSMDFDLDNQRQFNGEGRSIQNNKLAGSISVTVAKVLANGNMVV
                     QGEKWVRINQGNEFVRLSGIVRPQDIKADNTITSDRIANARISYGGTGQINNTNAQGW
                     LSRILWGPLFPT"
     gene            complement(28450..29235)
                     /gene="flgG"
                     /locus_tag="JBH85_01700"
     CDS             complement(28450..29235)
                     /gene="flgG"
                     /locus_tag="JBH85_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HAU0944900.1"
                     /translation="MEPALWVSKSGLEAQDKNIATIANNLANVNTTAFKKGRALFEDL
                     IYQNLRQAGAQSSQNSQIPTGINMGTGVHLVATEKIFSQGSLQNTQNALDVAIEGRGF
                     FTVLMPDGTQSYTRDGSFKTDSTGQIVNSNGYPLQPNITIPPQTTKITIGTDGTVSAL
                     VAGNNAPSVIGNIQLTDFINPAGLQPIGQNLYTETVASGTPITDNPGNSGLGTLLQGS
                     LEASNVNVVEELVNMIQAQRSYEITAKSIQTVDSMLQYLTQTL"
     gene            complement(29382..30128)
                     /gene="flgF"
                     /locus_tag="JBH85_01705"
     CDS             complement(29382..30128)
                     /gene="flgF"
                     /locus_tag="JBH85_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgF"
                     /protein_id="HAU0944901.1"
                     /translation="MEPILYNSISGSRSDFKRQEIIANNLANINTPGFKADLYQAQTM
                     YMNNANGNNQFSAHSFITQNANGIDTSPGEIITTGRDLDVAIDGDGWMAVQDSQGREA
                     YTRGGSLRLNPNGQLITASGKVVLGDGGPISIPPAQSIEIGSDGTISIVPLEGDVKSL
                     AILDRIKLVTLDRNNIYKNDEGLIQLKSGAATANSNIKLQSGALEGSNVKAIDQMVAM
                     ISAGREFDAQMKLLSTVDDNGQKLAQLLQE"
     gene            complement(30139..31452)
                     /locus_tag="JBH85_01710"
     CDS             complement(30139..31452)
                     /locus_tag="JBH85_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HAU0944902.1"
                     /translation="MVFNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYS
                     SSAYGSGSNAVGGGVKLSRVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKIYTR
                     AGQFKLNNENYIVNANNQRLTGLLTDSNGAITGASGDLRINTANITPRASSNVSVGVN
                     LNSQSKAPNVDWVGGASPATDTYNNVTSSTIYDSLGNSHVLSMYFIHADSTALAGSPN
                     AASPAGTENQWYVAFQIDNQNVPPNVGAQNTNNLFRANFNSDGSFAGVFDTSNAALPN
                     NLIPLSFNLNNGSSPLNLNIDLSDSTQFGSPFAVQSAYNNGYTTGSLAGLDIDDSGMI
                     YGRYTNGQSLAMGQIQLANFADPESLQNIGNTSWAETTASGQPLISAPGSGGLGLINS
                     GRLEESNVDLTGELVKLINAQRNFQANAQTIRTGDAITQTIINIR"
     gene            complement(31566..32243)
                     /gene="flgD"
                     /locus_tag="JBH85_01715"
     CDS             complement(31566..32243)
                     /gene="flgD"
                     /locus_tag="JBH85_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HAU0944903.1"
                     /translation="MTTNSVNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQ
                     DPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASSLQSNQALQASALVGRKVLVNS
                     NTLSLGTEGDVKAAIDMAPGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQ
                     SNQRLASGRYTIKVTGTYGGQEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLS
                     QVRQISV"
     gene            complement(32255..32677)
                     /gene="flgC"
                     /locus_tag="JBH85_01720"
     CDS             complement(32255..32677)
                     /gene="flgC"
                     /locus_tag="JBH85_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HAU0944904.1"
                     /translation="MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQA
                     KYPVFKSVQENANQWMGEQIKAGVKLDGIYESDAEPHRRYDPNSPIADKDGFVYTSNI
                     NYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQLGE"
     gene            complement(32680..33072)
                     /gene="flgB"
                     /locus_tag="JBH85_01725"
     CDS             complement(32680..33072)
                     /gene="flgB"
                     /locus_tag="JBH85_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HAU0944905.1"
                     /translation="MAINLDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDVD
                     FNEVLTATMAGNSQQLRVTSDQHINTNADFMTHLKYRMTHHASLDGNTVDKDMETTEF
                     ARNALNYQASLSFLNGKIKSMLTALKGE"
     gene            33272..34222
                     /gene="hemF"
                     /locus_tag="JBH85_01730"
     CDS             33272..34222
                     /gene="hemF"
                     /locus_tag="JBH85_01730"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HAU0944906.1"
                     /translation="MQSLIMPISKTLPYNAIEQIKSYLLQLQNTICVSLESIDGKTRF
                     HEDSWQRAAGGGGKTRIMANGNVFEKAGVNFSHVSGEQLPASASAHREELAGRHFSAL
                     GVSLVIHPQNPYVPTTHANVRFFVAEKEDSEPVWWFGGGFDLTPYYGFVEDCEHWHQT
                     ALNACLPFGETIYPKFKRWCDDYFFIKHRNEARGIGGLFFDDYNEISFDHSFELMRSI
                     GDHFILAYEPIVARRKDIPFGNREKAFQNYRRGRYAEFNLVYDRGTLFGLQSGGRTES
                     ILMSLPPIVHWEYNWHPEKGSDEEKLYTDFLPAKDWLKKE"
     gene            complement(34367..35674)
                     /locus_tag="JBH85_01735"
     CDS             complement(34367..35674)
                     /locus_tag="JBH85_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0944907.1"
                     /translation="MAAGFIGLLKQRKFLPLFLTQFFGAFNDNAYKLAMLTMISYHLS
                     HTQEQSEYYQAIAGALFILPFFIFSATSGQLADKYDKALLTRLVKVLEVLLMIIGGIA
                     LYSGSIFLMMCTLTGMGVHSSFFGPIKYAILPDHLPKKNLLAATGLIEASTFIAILLG
                     TTLGTLTVGGKEATPYIAIIMTLSAAFSGLVSSLFIPPAPSALHELKVDFNLWRATVK
                     MLKEAKKEYGILISILTISWFWLIGAIMLTKLPDYTHYVLGASAHVFALFLALFSIGI
                     ALGSITINWLLKGQVNLSAVPMAMLAFTFFAFDLYWSSPAGHDLKTPLFNLFNFFTSF
                     THWRIAFDLFMLAFCAGLFVVPLYTYLQIISPVENRARTIAANNIFNALFMVMGTLLV
                     MLLLFFSFSIPQVFLILCLLNLVAAMFLFLGLRTLRRSSEEIA"
     gene            complement(35916..36479)
                     /locus_tag="JBH85_01740"
     CDS             complement(35916..36479)
                     /locus_tag="JBH85_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAU0944908.1"
                     /translation="MVADLMLCTNFFIFTGGPGSGKTAVLNELNTWGYLTVSEVARSI
                     IQKQQADGGDAIHTGNRKAFRDLMLEQSIADYCKMQSEEKIVFFDRGIPDLYGYSKAF
                     CGEASKEVNEAVGRFRYNKTVFIFPPWPEIYENDDERQQDYQEALQTYYAVKEGYFDC
                     GYVLLEVPKCPIKDRANFIFQMISKNG"
     gene            complement(36537..37508)
                     /locus_tag="JBH85_01745"
     CDS             complement(36537..37508)
                     /locus_tag="JBH85_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0944909.1"
                     /translation="MRGKMIDDPIDLLRQYSRKLVRELGMLQLNKLAAKEQPSYWHTL
                     IEINKEPNITISKLSQLLLVSLPTLSRIVNSLINDELVTVNEGLDKRERFLRVTDKGK
                     EKVNYIDEYSNTKIKRAFHYLTDEEREQVITAIGKYAQALEQSRLIRDQIRILRLSTS
                     RALRKQIVNMIENIQVNEFHLSITPEINASILKAEEEYCYYSSCNFWYAVDEQGGIIG
                     SIGLKKLNHTEGEVKKFFIAPKYRGLGLAQKLMLTLVRNAMKHGFKKLFLGTVAQLNA
                     ARRFYEKNGFVLVNKNSLPKEFELCPLDTHFYYCETDKLDKSLRELI"
BASE COUNT        11492 a         7706 c         6558 g        11752 t
ORIGIN      
        1 atatgaaatt actattcgat ttttttccta tcgttttatt ttttatagtc tataaatttt
       61 ttggcattta taccgctact gctgttgcta tggtagcttc attaactcaa gttgcgtttt
      121 acagattaaa gtttcagcat tatgaaaaaa tgcatttgtt tagtctggct atcattatgg
      181 tcttgggagg agcgacgtta ttctttcaaa acccttggtt tatcaaatgg aagcctacag
      241 gaatctactg gttatctgct cttgtctttt atggttcaag ttatatagga tctaagccac
      301 taatacaaaa aatgatggaa gcaaacatca atttaacaac aaaaatttgg tatcgactta
      361 atttagcatg gacattattt tttatagtaa tgggggcatt aaatttatat gttgcctatc
      421 attatgacac tgatgtatgg gttaatttta aattatttgg tggtgttggg tttactttac
      481 tttttgtgtt gattcaagct ttttatttaa caaaacacac agatgaaaaa agctttgaaa
      541 aacaatagtg atatctctgt atctgcagaa aaatatagca tgtaataaga gaaaaagtag
      601 gagcaccgat gagattatta cttgttgaag acgatgaact gcttggcgat gcagtaaaag
      661 ccggactgac acaatttggt tatgttgttg actggctaaa agatggcgaa gctgctcggg
      721 cggctctcaa atcagagtct tttgaattaa ttattcttga cttgggatta cctaaattat
      781 ccggtttatc attattgcaa aacatcagac atgatggaaa tagcacacct gtgattattc
      841 ttacagctcg agaatcaata gaagatcggg taaaaggctt agatagcggt gctgacgatt
      901 atcttattaa gccttttgat ttaaacgaat taagtgcaag gattagagca ttggtaaggc
      961 gctctcaggg cagagctgat tccgtgttgc aatataaaaa tattactctc gatcctgctg
     1021 ctcattctgt cttcgtggat gatgtactcg tcaatgttcc aagaagagaa tttgctctat
     1081 tgcagaaatt acttgaaaac agtggccagg ttttatctcg agaacaatta atgcagagta
     1141 tttatggctg ggaagaagac gtggacagta atgctctcga agttcatata cataatttac
     1201 gtaaaaaact taacgcaaac tttatccgca ctatacgtgg tgtaggatat atggctgaaa
     1261 aaaatgacag tgtacttcta tcgtgaaatc gtccattcga aaatttttat taattaatct
     1321 gcttcttgca attactatta ctacaacatt aactgctatt ggtaactatt atcttgatca
     1381 aaaagacatt caagaccacc ttgatacatt gatggctatt tccgcgctat cctatcaagc
     1441 cttattaggg gatgatcttc atcaaaggcc tcttgcaaaa attcaaaatg ccctggaatc
     1501 tattccccaa aaaattaata cttattatca aaaaagatat ttaaatgatg agcctcaaga
     1561 aaattatttg gataaattta attttcaggt atggaccaat ggaggtaaat tattattaca
     1621 ttcacctact gcccctaaaa taccattaac agcagagaca gacggcttca gcgataaaag
     1681 aatttctaac caggattggc gagtattcac aacttataat gacaaagcag gaattcgtac
     1741 tgtactggca gagcgttatg ataccagaaa tgagctgggt cacagaattg cccaagatga
     1801 tctctatatt atgttgctta cttttccatt atcaggacta ttgatatgga tcattattgg
     1861 aagaggacta gacagtctgg atagagtagc agaagaggtt gctaaccgcg caccaagtca
     1921 cctggaacct gttgatttac aagaagttcc cgaagaaatt aaacctgtaa ttgatgaatt
     1981 aaataaatta ttttttcgac tcaaggaagg gtttgagcgt gaaaaacgat ttgctgccga
     2041 tgcagcacat gagttgagaa cacctcttgc agcacttaaa gcccaagctc aagtggcttt
     2101 gaactccaat gatatagaag aaaaaaatca ggctttacaa aaattaattg ccagtgttaa
     2161 tcgaagtaca catatagtgc agcagttact aaccatgagt aaacttgtac cagaagcaac
     2221 agaactacat gagcaagatg aagtcaatct aagtaaatta actcgtgaaa tattagctat
     2281 gttagctccg tctgcagttg aaaaacaaat tgaactggaa tttgaaactg atgagaaaat
     2341 gcctaaaatt tatggaaatc caaccgcttt gggaatatta atacgcaatc tggttgataa
     2401 ttccattcga tattccatgg aaaatggaag agtcattgtt cgattattaa aacataataa
     2461 cgaaatcata ctcgaagtat gtgacaatgg cccaggaatc ccgcctgaat tacaaaaacg
     2521 tgtttttgaa agatttttta gagtattagg aaacaaaagc cctggtagcg gtctgggttt
     2581 ggctatcgta cagcaaattt gcgaacttca cggtggaaga gtcgtgcttg actcacctaa
     2641 aattggtaca ggcttaattg tgagagttta cttgcccatc aaaacaaaac caaaataaac
     2701 tctataatca aatcataact ctcatcagtt aataataact acaccaccct ttcttttgtt
     2761 caattaatac cgtacacaac tttttaccat aactcagatt gataacttcc ccataaaaat
     2821 tgtcccttct tatttttctt tttcggtaat actaggcaat gaatctaaaa tttcctattt
     2881 tcagtaatat ttcttttgag gtaacttgct gtaagcctta atctgtcaaa attaacgcat
     2941 atagtccata atatacatat atagattata ttttaattaa aatgcctcaa atcctaaatg
     3001 cattagcggc tgtcattgaa gctgacttgg taaaactaaa tcctgagcag aaagagattg
     3061 ttgataaata ctctgacaaa ctcttaaatg ttcaatataa agctcatcaa ccacgcacat
     3121 ttgagttagc agtaaaaacc atgaaagagc aactcgaaca attatctact tcattgaaaa
     3181 aaataaattc agagatggca ccagacaaag ataaacgtcg gcatgaaatg attcaaaaaa
     3241 ttgagagtga tttaaaactc atagagagtt gtataaacgg ggattttgaa aagaattatc
     3301 aaaatctaaa gaaagagttt ttacaatttt tacacgaggc tgatagcaaa gacccttttc
     3361 ttaaaaaaat tcacggtctt ttagaacaag ataatccatc aatcctgtat ctaattgagc
     3421 aagaattgga atcctcatat tataaagata aatattctca acaatttaac caattgattt
     3481 tgttgatgaa attaaaagta tctcatattc caaatccagt ggttactcca aacttgttac
     3541 aagacgtatc cttgcttcaa ttggaaggag aaattgaaaa gcaacgaatg atagccataa
     3601 ttgatggaca ggagccctta gctcgtgcgt taaaatattt atcgattgga tgcactacaa
     3661 ctgctgcgag aacgaaggag ttacagaaaa ccatagttca gcatggtaca aatttgcagg
     3721 cctatcggca tcaagaaaaa tgtcgtgaac taggtggtcg gattgttctc cattgcagtc
     3781 aggcaatgct tccaggcatg ggtttaaaga gtggtatgtg tcacggctta gctaggcatt
     3841 gggcaaacga tgtaataaag aaagacagat ttatgggctt tcgagggaat caagaggtat
     3901 ctattcagcc aaccaaagca acggataaaa tactacaggc aataccaagt tttaatgatt
     3961 ttgtccgtct taatcctaaa atctatgaaa ctcaacagtc tcaaaaagaa catatctttc
     4021 ttgagtatga ggatacagtg ggatctgaac cagaaaaaca gtttgaagaa ttcactgatc
     4081 gaataatgtc tgaattagac aagtatggta aatctgctac ctttgttagc tatgctaata
     4141 gcagttctgg acatgttgtt gctatccaca aacgaactaa accgacacct caaggtttca
     4201 tcatcgacta ttttgatgct aatgcaggtt ggatgcagtt taaagacgat aagagttttc
     4261 aagagttttt aacctattac ttaaatgata gacatgcaaa agaaaaactt aagagcattg
     4321 cttttgaaac cctgtgttat cctagctcct acactcatat gttggataag ctctgtgaaa
     4381 aagcaccaca acctactcct cagagacaaa gagcacagag cttgtcagca gaaacagaaa
     4441 gaaacactcc tcaaataaag tcacaaatta gcgaaaaaac tgagaaaact gagaaaactg
     4501 agaaaactga gaaaactgag aaaactgaga atgagcaaag cagaaataca agaggatttc
     4561 ctatttaaag aaagcttcta aggtgatgat agtaccacct ttagcttgga gaatctgctt
     4621 cctgtttctg ggtatcggtc gcagtctttg cttcttcttc cttcttttga gcattatagt
     4681 tcgcttcctt tacacttttt ttatgctctt tcatctgttg ggaagtaacc ttttctgtgg
     4741 tatttgaaga ggctgcatcg gctgtaatag ccgttgattg ctctgtgttt ctctgaattg
     4801 acatacctgg ggtcacttta cccttatcag tttggtgttt atgagtattg acttgagaat
     4861 cagcagcatt gacagcaaag gttagcatca cacttaccat aaaaccgatc attcttttca
     4921 taaatgctcc tgtttattat cgagaatttt atcagatcac agttacaatc tcatcgcgaa
     4981 gaaagaattt gcaaagcctc acgaatcaat tgctcacaac tcttattgcc attatcaatt
     5041 ttattcataa ctttccacgc ctcttgtggc ttatagccta atgcctccaa cgcgctgatt
     5101 gcctcttgtt gactatgagt gctacctgcc tgcttttgga aggtatcgga aaccgaacca
     5161 tcaaattgtt ttatactgtc tctcatttca actactaagc gctctgcagt tttcttgcct
     5221 atgccaggta atttggttaa taaagcagca ttctcctggt gaatacactg aataaattcc
     5281 ttaggagaaa tactggataa aacagtcata gccagtttgg ggcctacccc attcacttta
     5341 attaatgatc tgaataaaga acgctcctct ttatccagga agccatacaa taacaaagca
     5401 tcttctcgaa ctatggtgtg aatatgtaat ccgacaggtt ggttaccatt ttctatctga
     5461 aaaaaagtat tcaaagatgt ttctacatca tatcctacgc cattgacatc aagaaccaat
     5521 tttcctggct gatgcttatc tataatttga ccatggagcc agcctatcat agtctcatcc
     5581 tcctgcgttt cgttcctctt gaaccgatta attttgacaa accatttctc atatggctat
     5641 gacatattgc tattgccaaa gcatcggcag cgtctttttg aggagctcga ttgagctgaa
     5701 gaagctctac aaccatatga ctcacttgat ctttttcagc ggccccataa ccaactacac
     5761 tttgctttat ttctcttgct gaatactcaa agattttcgc acgatgtgag gctgctgcta
     5821 ccatggcaac cccccgcgca tgtcctaatt tcaaagctga attaggattg ttatgcataa
     5881 atatctgctc aatagcaacc tcagttgggg aatagtgatc cattagctca catattccat
     5941 catatatttg caataattta tgacttaatt ccgtatcgtt tgatgtgcga atacagccgc
     6001 tatcgatgta cgcaatttta cggtcagatt ctttaatcaa tccatatcct gtaacccgtg
     6061 agcctggatc tatccctaat ataatcgtca ttaattcatt gattctaata ttttttcaga
     6121 gaattcagca ttgctgtaaa cttcttgtac gtcatccaaa tcctccagca tgtcaatcag
     6181 tttaattaaa ctttcagccg tttcatcatt aattggaacc aaggtttgtg cacgcatagt
     6241 taaatgagac tgctcaacct ccaaaccggc atcctgtaaa gcatttaaga cggtgtgata
     6301 agcttctaca ggggtaatga tctctatctg accatcttct acagcaacat cagaagcgcc
     6361 agcatcgatt gcaatctcca tcactttatc ttctggctga ttagaagcca tgagaatttc
     6421 accttgatta gtgaaaagat aggatactga accatcagtg cctaaattac ccccatgttt
     6481 tgaaaaagca tgtcgaactt ccgatacggt tcgattttta ttgtcagaca aacaatctac
     6541 cagtatagca acaccacctg gcccgtaacc ttcataacgc atggctatca tagcctcacc
     6601 atcaactccc cctacccctc gcttgacagc attatctatg gtatcacgct tcatattagc
     6661 attcagagcc tttttaacag catctctcaa gcgtggatta cttgactcat ctcctccccc
     6721 catacgggca gctacagtaa tttcacgaat taatttagta aatatttttc ctcttttggc
     6781 atcctgaaca cctttacgga atttgatatt agcccattta ctatgaccag ccattacatc
     6841 acctctaaat gaatttttat ttggagatta tacaatgctc taacaccaaa aagaatgact
     6901 aaagccatcg atgctctcga caatttgaac ttttttggac tatgctagca ccatcaaaaa
     6961 tcttgaagga gattgaactg tgtatttgca aggatttggt aattatcacc acagcgaggc
     7021 tgttaaagga gcactacccc caaatcaaaa ctcaccgcaa cactgtagct taggacttta
     7081 cgcagaacaa ttaagtggaa ccgcattcac tcgtccccga cataataatc ttcgaagttg
     7141 gctatataga atacttccta ctgttaccca gggcacgtat tacccctatg agtttaatat
     7201 tatgcaacct tttgttgatg agttgtcacc caatgccatg cgttggtcac ctctttataa
     7261 cagctctcaa attaaatgtg attttgttga aggactattt catattgccg gtagcccgtt
     7321 agttaatacc tatacttatt attgcaacca ctccatgagc gataaatatt tcgccaataa
     7381 tgatggtgag ttattatttg ttccctatgc aggcgagatt catctgcata ctgaatttgg
     7441 caaattaatg ctctcttccg gatcgatcgc ggtgatacct cgtggcgtta aatttaaagt
     7501 ggaagtaatc agcaaggagg caaaaggtta tctttgtgaa aatagcggaa atcccttaac
     7561 cttacctcag ttaggcccca ttggagccaa tggtttggca aacccaagac attttcaata
     7621 tccagtagcc gcatttgaaa actctggcag cgagcatact ataatctgta aaaaccagaa
     7681 aaaattatgg tttactgtat gcaaccactc tcctttaaat gtcgtcgcct ggcatggcaa
     7741 ttatgcacca tattgttatg atctcagttt gttcaataca attaacacag tcagttttga
     7801 tcaccctgat ccttccatat tcactgtatt aacttcagaa agcgaaatac ccggtgtttc
     7861 taacttggac tttgttattt tcccacctcg ctggatggtt gccgaacata cttttagacc
     7921 gccttatttt catagaaact acatgaatga actgatggga cttgtctatg gtgaatatga
     7981 cgccaagaag gaaggattca taccgggtgg tatcagcatc cataattgca tgactccaca
     8041 cggacctgat tatgaatctt acgaaattgc agcgtcgcag gatctaaaac caaattacat
     8101 caactcccta gcctttatgt ttgaaaccaa agactactgg caagtaactg agcaagccta
     8161 tcgacatccc agtaggcaaa tggattatct taattgttgg caaggcttta aaatagagtt
     8221 tagtcaataa attgactgct ttttaagatg taaaattgac ggtaattaat taatttggtt
     8281 tcagttgggt caaatttgac ccaacttgtg tgtaattaat taactggtta aatcaaaaca
     8341 aatcctcttg tgttagtcca acccgctcta acaaagttct aagtgtcttc aacgcttcaa
     8401 cttgaatttg gcgaacgcgt tctcgggtca aatcaatttc cttaccaacg tcttccagtg
     8461 tcgctttttc aaaacctctt aacccaaaac gtcttgcgat aacctgctgt tgattctcag
     8521 ttaatttatc cagaagagat tctatatgct gccttaaatt ctcattggtt agcagctctg
     8581 caggatttaa actgttttca tcagcaattg tatctaataa agatttggtt tcatcaaatc
     8641 caattggagt atcaactgaa gcgactttat cattcaatcc caataatttt tggacatcct
     8701 ccaaaggctt atccaccatt tctgctattt cttcaggtga tggttcatga tccagttttt
     8761 gcgtcaattg ccttgccgct ctgagataaa cattaagttc tttcacgaca tgaataggca
     8821 aacggatagt tctcgtttga ttcataattg cgcgctcaat agtttgccta atccaccagg
     8881 tcgcataagt tgaaaaacgg aatcctcgct tggggtcaaa tttctcaaca gacttcatta
     8941 aacccaggtt accctcttcg attagatcaa gaagaggcaa tcctctatta agataacgtc
     9001 tggctatttt aaccaccagg cgcaaattcg actcaatcat tttcttgcgt gcttccatat
     9061 caccttttaa agcaagagtc gcataatgga tttcttcttc agccgttaac aaaggagaaa
     9121 aaccaatttc acccaagtaa agttgagtcg catctaaagc cttggcaata tttttcccgc
     9181 gctggaatga aggaaaagtt tcatcatcag taaactctgg aagttcatca agctcttctt
     9241 ccattttttc gatatcaggt tcaacatctt cttctgacaa cagagattca tcatctggct
     9301 cagaccattc ctcttcttta aattccttgt ccttaattgg ctcttcatca tcttgcattg
     9361 tatcacctat atgtttagct atgccttgaa atagtttttt acttcttaac aagcctattg
     9421 ttgctataac tatgagttat atgtcaacct ttttgtagat aattcaatgg attaactggc
     9481 acccctgctc ttctaatttc aaaatgcaca ccccagtatg atctatctat taacccagct
     9541 tctgctatta cctgccctgc attaacgcgc tgtccttctg tcaccaggtt tctggcattg
     9601 ttgccgtatg cagttaaata ttcattactg tgtttaatga taattaaatt accataccca
     9661 gccaaaccgc tgccagcata agccacaact ccactcgctg aagctctaac tttgtctcct
     9721 ctgttacatg caatatttat gccttttttc ccctgagaag gaatgaatgt tgtaacaaca
     9781 cgaccagtaa ctggccatag ccaaccagag gaagaacgta cattataagc tggagaataa
     9841 atagtttttt gttttggctt atgggtaata tgtaagttag ctctgggagc tgaatgaaag
     9901 tgatttgatt ttggcacgat gccttttaaa cttaaaactt gtcctactcg caaagaataa
     9961 ggtggcctta ggtgattgtt gatcgcaagc cgcctataat cagtatcata acgaaatgct
    10021 atagcataaa gggtctcacc tgatcgcacc gtatggaatt tctgatattt tgaataaggc
    10081 tgccatttta gctcggtaac aggagccaaa tcacttcttg tcccacaacc agcagcactt
    10141 aagataaaaa aaatacaaat taattgtttg cgaaataggc gcatcattat ctcatttatt
    10201 atttattaat tttctatgca aatttcgtta agtaagttag ataaatgatc aaatagctta
    10261 taatgagtca tgtctaaatg aagcggtgtt atcgaaacat gacctgtttt aattgcaaaa
    10321 aaatcagtac cagcaccagc atctgcttct atacccggtg gaccaaccca ataaattggc
    10381 cttcctctgg gatcatattc tttaataata ggctcagcgc tatggcgagt tcccaatcgc
    10441 gtaacctgca atcctcttat ttgattcaaa ggtaaatcag gaacattaac atttaatata
    10501 gtttgagaag gtaatttgtt agcacttaat tttataacca attgtttggc aataattgca
    10561 gctgtttcat aatgttgtat gttgtcccct accattgaga ttgcaatagc aggcaaccct
    10621 aaataacgac cttccatagc cgctgccact gtacctgagt aaagtacatc atcccctaaa
    10681 ttggcaccct cattaatccc tgaaacaact atgtctgtag gctctaaaaa tccggttaac
    10741 gccagatgga cgcaatcagt aggtgttcca tccacactat aataaccatt gtccaattgt
    10801 ttaactctta aaggttgtgt taaagtcaaa gagttactgg cgccacttct atttctatca
    10861 ggcgcaacca ctttaacttc tcctaaagtg gacagctcat tagctaaaat tttgataccg
    10921 ggcgccaaaa ccccgtcgtc attgcttact aatattttca tgtttaactc tcaggggatt
    10981 ctaaccattt tacaactgct aaatagtaag caagatcttc ttgatttctt ttcaatgaat
    11041 cttgtaattc agcgttatcc tttttactct gtatttcccg ttgctgattg gcaataacct
    11101 cctgcaaagc caaaattttg ttaccaaact cttgtggatt gtattgtagt tgataagcaa
    11161 gaccattcat cctcctgcca attgcctcca gttgctggca actcaatcca tcgggttgcg
    11221 tgccagggca caattttaaa gcattttgca gttcggatgg gtgggaacga taataggatt
    11281 cgtctttttt aaactgacat gaaaccaatc ccaaagttat taatattatc actaagtact
    11341 tattcatacc cgccctcttg atgtaaacta caaaaagtcg atattatcac cagtcagcaa
    11401 gtaacgctat cttatgagaa taccatatgc ttgattttag tttgaatcgt gatccccaaa
    11461 cgggcgagtt atacatagaa acctcattat gtgggaagcc tttactgact acaccgcaat
    11521 taaacaaagg aacagcattt actcaggaag aaagaaaaga tttcggtctt ttaggcaagt
    11581 taccacaccg cgtagaaact cttgatgaac aagtaaaacg tgcctatctt caatattcaa
    11641 gttacacgac acgtttgcag caacatattt atttgaataa tttacatgat aaaaaccaaa
    11701 tagtatttta caaactgcta agtcgtcatt tgggggaaat gcttcccatc atctatacac
    11761 caatcgttgg tgctgcagcc aagaggttta gtcatgaata cagacagcca cgaggattgt
    11821 atattgctca ttcggataaa aaccagcttg aggaaataat taataaccgt tcgaatccag
    11881 acatagacct tgttgtagtg accgatggtg agggagtcct aggcattggc gatcaaggga
    11941 taggaggaat ggatatacct gttgcaaaac taatggttta cagcttatgt ggtgggattg
    12001 atccaactcg cacattaccc atatttcttg atgtaggaac taacaaccaa gaattattaa
    12061 atgaccctat gtatctgggt tgccgtcacc ccagaataaa aagctcagaa tacgacgatt
    12121 ttatcaaaac ttttgtcaat gaaattcata agcaatttcc aaatgctttt ttacattggg
    12181 aagactttgg tcgaggcaat gctcgacgaa tcctggatca atttcaagat gaattgtgta
    12241 cttttaatga tgatattcag ggaactggtg cagtaactct ggcagcaatt ttggcagcat
    12301 gtgatgtaac tggactaccc ttacatgaac acagaatcgt tgtgtttgga gctggctcag
    12361 caggtactgg tattagcgac caaattgttg atgcgatggt gaaaagcgga ttgagcctaa
    12421 ctgatgctta tgacagattc tggttaatag acaaacaggg gttattactt gcgactgacc
    12481 aagagcttac tgatgctcaa aaaccctatg cacggaatcc tatagatata caatcctggg
    12541 aaattaataa taaacaacat ccttcgttta ctgacactat caggcatgtc aaacctacca
    12601 ttttaattgg ctgttcagcg caaacgggtg cattctcaca agatattgtg gaaactatgt
    12661 cgacatcctg cgagcgacca atcattttcc ctttatcaaa tcctgatgaa aaatgtgaag
    12721 cacagccctc agatatattg gcatggagta aaggacgggc attaattgct actggaactg
    12781 cttttgcccc tattgaatat cagaaccgaa tggtgcaaat agctcaatgc aacaatgcct
    12841 tggtattccc tggaattgga ttgggcgttt tggcggtaag cgcctctcgt ttaaccaaag
    12901 atatgatatt ggctgccgcc cagactttaa gtaaatttgc gccaagtaaa aaggacagct
    12961 ttttgcccct gttaccctca ttagacaatg cgcaaattgt agccaaagaa atagctattg
    13021 cagtagctca gtgtgcaata gactcaggtt atgctcaaaa aaatcaagac aaggagctac
    13081 ctcgattaat tgatgaactc ttttgggagc ctagatatct gccttttaga aaaaaaggat
    13141 ggagtgaata gaataaagct ctatgactat attattgaaa aataaatttt cttaattctt
    13201 agtctgaggg gttggcgaaa ttaatcgtta cattttttat agtcccgctc tctggctccc
    13261 aggaacgagc gtatttaaag accattttgg tttgagcggg ataggtttta cctttattca
    13321 agttaaaagt aaatagcatt ttaccacccg cacctatcaa attagtcttg ggcttttcat
    13381 aaatgctatt acttaaggta agcaagtttt tgtcaaattc tactacagac cattgataac
    13441 ctgtagttgg attagctgca agactgacaa cgaaactggg attttttgag ctgacattga
    13501 tgacaacctc gttatttgca taggccagag cagagaagcc cataagtaat ccgctgaata
    13561 attttttcat atttttttcc tcacaaagct tcttacacgc tcaccattat gggttacgat
    13621 ttacgttaat ctgttttaat ttcccataat caaaaattaa ttcgtattga aaatcaacag
    13681 gagatttttg ataaatccag gtttcgactg tattagtacc ataacctatc tgataaccag
    13741 ccgcgttgta taatggcaca ttctcctcat aaaccaattt atcaagtggc tcaccacatt
    13801 tagacaaaac agtgtattta ctatcccctt catagaccaa tttatctcca cacctcattg
    13861 catacgcatt aggatataca atcattaaaa agacaatagc caacaaataa ttccggatga
    13921 tcattcccta ccccttgaga attcaatgct ccttgcaaca aaattttcaa aaagtctatt
    13981 tttatagcat agcacttggt atctgattat tcatcccaat tgtctctgtc tcgatcggat
    14041 tcaggcaaga atccacctac ttgagcatcc cacatggatt tatataaacc atccttcgct
    14101 aataactctt catggcttcc atcttcaatt atttttcctg cttcaaaaac taaaattcta
    14161 tccatatgca atagtgttga taatcggtgg gcaataacaa ttgtagtctt tgattccatg
    14221 agttgccaca atgaattttg tatggcttct tcggttaggg aatccagctg tgaagtagcc
    14281 tcatctaata tcaaaatctt cgtatttttt aaaatggcac gagcaattgc aacgcgttgt
    14341 ctttgtcctc ctgataattt aattcctctt tcacccacca aagtattata accatccggt
    14401 aaaagtgaaa taaaatcatc acagcatgcc tgttttgatg ccatcacaac ctcatcatca
    14461 gtcgcatcag gattaccata acgaatgttt tccatcaaag tcctatgaaa caaagtggta
    14521 tcttgaggga taaggctgat agctgagcgc aaggaatctt gagttaccag actgatatcc
    14581 tgaccatcaa tcaaaatttt tccagattcc acattgaata aacgtaaaat taaatggata
    14641 aacgtcgttt taccacttcc cgaaaaacct accaagccaa cacgctgttt cggcttaatg
    14701 attactgatt tattttcaaa tactttctta ccctggttat aatgaaatgt aacgctatca
    14761 aactctattt tgccttcttt aacattcaat ggcttggcat caggaacatc ttgaacctct
    14821 atgggtgcac taagcaaagc aatagcttgt cttgctatgc ctatctctcg aaagaattca
    14881 gcaatagcat ggcacaaata ccaaatctga gtcatgatag aaaacgatac attgaatata
    14941 aagaccaagt cgcctgttgt aatgagtttt ttattccaaa aagttaacag gaaatacacc
    15001 atagccacta gcatgactgt gactggaata tccagataca aacgaaatat gttcatataa
    15061 atcgtcagtt ttttattact ttgtacctcc atattctgac ttgcggaaat ataagccagc
    15121 tcatctcgag atcgagcgaa aagcttcact acactggcat tactcaaact atcaactatt
    15181 ttaccgctta actgactttt atcttctgcg ttttcttttg catattgatc aactttttta
    15241 gataatctat aactgatgta aagctgaaaa ataatccagc ttaacaaaat aaccgcaaac
    15301 cagtagttaa tagtgcacat caaaattaat gccacaatga tagaagcgaa tgcggcgatt
    15361 gcataccagg ttataatatt gaatatggaa tccagagcac ggggtaagtc attgactttg
    15421 ttagctaaac cacccgccat ttgattggaa aaataatgat aagactggcg actcaaatgc
    15481 tccataacag acattctgac atcagcctga aatcttggta tcacataacc ttgccaccaa
    15541 ttttgcagac gtaaaatcac gatcaaaacg aaccaggcac cgccacctaa ccataaagcc
    15601 ggagcaacta ctgaaaaaat attttcttcc ctggagtgca tcccaagagc atcaatgatc
    15661 attttcaaag aatagggaat agcattattt tcaagcacca ttgcaatcgg tgctacaaaa
    15721 aataccgtaa aagccaaagg ctgttttttt ataaaatgcc agaaaaaccg acccagtgtt
    15781 tttggcaact cttcagattt tttattatcg ctattcataa accatacctt caatgaattt
    15841 tgacaaggtt cgattattct aacctaatat ttgctaattg gagaatttat gtttaaaaaa
    15901 caattatatg ccctatcaat tcagctattc tctcagattt gcattgccat gaaataaaat
    15961 tagcccttca aaaattgaaa atataaaatt taatcttgat cttaaacctt ataaaggcga
    16021 tcattttttc atttgtaagt tagaggagta cgtgtggaac acgaaacgat ggaatttgat
    16081 gttatcatag tcggtgcagg gccttctgga ttatccgctg caatcaaatt aaagcaactg
    16141 gctttagctt cacaaaaaga aattactatt tgtatcctgg aaaaaggagc tcaggttggc
    16201 gctcatattc tttctggcgc agttttagag cctagaagct taaaagaatt actaccagat
    16261 aattggcaac aggccccact ggatactcct gttaacaaag atctgtttta ttttttgact
    16321 caaaataaat catttaagct ccctactcca aaacctatgc ataatgaagg aaattttatt
    16381 atcagtttag gggaactatg taagtttctt gcagaacaag cagagtctct aggctgtgaa
    16441 atataccctg gatttgctgc agcagaaatt ctctacaatg ataaaaatca agtcataggt
    16501 gttgctactg gggatgtagg aattgataga caagggaaaa aaactgataa ttatcaacct
    16561 ggaatgcatt tattagccaa acaaacttta tttgctgagg gatgtcgcgg gcaattaagt
    16621 caaacattaa tgagtcgcta tcatttaaga gatcattcgc agccacaaac ttacggcata
    16681 gggattaaag aaatctggca agttgatgca tcgcgccatg aacctggaaa agttatccat
    16741 acggttggtt ggcctcttga tcatgcgact tatggaggct cctttttgta tcatctttca
    16801 gagcagagag ttgcaatagg ttttgttgtt gggcttgact acaagaaccc atggctcaat
    16861 ccctttggcg aatttcagag atttaaaacg catcccctta ttaaatctgt tctaacagga
    16921 ggtgagcgaa ttggttatgg agccagagca cttaatgaag gaggatggca atctctccct
    16981 aaacttacct ttcctggcgg cgccttgatt ggagatgctg ccggtttcct aaatgtgcct
    17041 aaaatcaaag gaattcacac cgcaatgcaa tctggaatgc ttgctgcaca agcttgcttt
    17101 gatgcgctaa gtgaagaaaa gagcggtcaa tttgaactaa gtgcataccc taagaaaatc
    17161 aatcaatcct ggctaaagca agagctctat gcagtgcgaa atattcgacc aggattcaaa
    17221 tacggtttat ttccaggtct aattaatgct gccttcgaga cttatgtgac tcgaggatat
    17281 tctccatgga ccttaaaaaa tcattctgac tataagtcgt taattccagc agacaaagct
    17341 aaaaaaatta actacccaaa accagatggc gtactcacgt ttgataaact ctcatctgta
    17401 tttttatcaa atacatttca tgaggaaaat caaccctgtc atctcaaatt aaaacaaccc
    17461 aagctggcca ttgaagtgaa cttaaaccaa tacgcttctc cggaaagtcg atactgcccg
    17521 gctgctgttt atgaaataat tgaggacgtt gaaaaaggac ctcgattaca aattaacgcc
    17581 cagaattgta ttcattgtaa aacgtgcgat attaaggatc ctcgtcaaaa tatagtttgg
    17641 caagcaccag aaggtggagg tggaccgaat tattcaggaa tgtaaccaat caaacttaaa
    17701 taatattttc gagtaaagtc ctgtagttat tagcagggat gttgatatct tgaacatgaa
    17761 aataaggatt attgcatgta ccaaccttat cttttatttg gcattttaat tctttctctc
    17821 attttattcg tttggaatta ttagagatac gatgcagttt gtatcctact attgattggt
    17881 cggtactatt attagctgct cttatccctg ttggagaagc tttacaaacg actgctgctg
    17941 cagatttgat tgcaaatgga tttatgaaaa ttgctggcca atattccccc ctatctttgc
    18001 cttgcttgcg attctggtta tcactatgac tttgtccgat ttattaaaca atgcagcaac
    18061 ggcattaatt atggctccca ttgcaatcaa aattgctcag tcagcccatc tgaatgtgga
    18121 ttctttctta atggcagttg ctattggtgc ttcgtgttca ttcctaactc caattgccca
    18181 tcagaacaat accatggtta tggggccagg aagataccga ttttctgatt attttcgttt
    18241 gggattacca ttggaactta ttgttataat ggcttctatt cgaacgattt tatgggtgtg
    18301 gccattataa aaataaaata atttgcatta aacctgtata ataatcgata aaacagaatg
    18361 gtacaggtta gggatattgc aattgcatta aattttttga gggtcaatat ccttaatttt
    18421 ttcccattga atattgcctt tttttatgtt cccgggaata tcttttgacc aaaattcttg
    18481 tacctgttta ttaagattga gatataaaat gccatcaaca attttccatg ctaatggatc
    18541 actcactact ttccgaccta ctgaaactgc aaaagcacaa taaccaccat atgctggcaa
    18601 atatttttca ggattagcct gaaacacttt cttgttttca tcagtagcga ataggtaagc
    18661 tactccatta tgataagcag tgtggttacc actaccacgg acaggaccat ttttctgatg
    18721 ataagaaacc aaatcatagc cttgaacacc aaccagacta atcgacgcat cagaagcaaa
    18781 caccagaaac ggcaagaatg ataaagatat tattgataat agtattcctt taatttgttt
    18841 catttttatc gtccttaatt aaattgtaac tggtagtgct taaatcacta ttaactcatt
    18901 atagatgctg cggctgtagt ttgctttaaa tcaaacagtt cgtctacctc ttggctaatt
    18961 gtctcaacag tccctacagg aaaccataga ttatttttaa attttttacc ttcatgtttt
    19021 gcaagttctt ttaaaatgag atgtaattgg tgttcatcca tttcaattcc cttgttatta
    19081 agttcctttt tttgacttaa aacaatcaat gcattgacta tgtgagtcaa agacaaacaa
    19141 atttgtggat cattttgaaa tacttgatct tgaaatacaa tcttaagcct attcaatgct
    19201 atatcatatt catttaccgt tacttcttga taagcagtta caattttatg caaaattctc
    19261 cctagcgctt gagagtttct ataagcacta ttatctctac cataggttaa ctcttcaaaa
    19321 cgcctcaaac aattcaaatt gaaatcatga acatcttgca agattttagc ctcatcatta
    19381 gggccatgta taataaactg cctagcataa atttttctat ccttgtcaat gagctctgtc
    19441 ctgtcaataa caccagggta accaaaactc atgggataag ttcttatgtc tggtttatgt
    19501 agtattttca ataatggtgc aaaatcataa ttaaaaacat ccggcgttgt gaaacacttt
    19561 aaaaataaat accattttcc ttcctcatga gtaaagcata tatgtaaata ggaaatatga
    19621 tcctgttgat tagatgagtc cacgactgat attgagtcaa ctggcaaatt actattatga
    19681 tttcgatgaa cattgtgttt aattggtaat gtaatcgaga ttgagtttac atccctcttg
    19741 gataccatgg gttgaaattc tgaaccgata tgattgaaag aggggctttt taataaaaca
    19801 tctctattgt ttattggaaa aaaatcaaat cggggttggc ttgcatcacc agataaagaa
    19861 gtaatggatg attgaatcga tgaattagat attttttgag tatttgactg cttcctaaaa
    19921 ccagtgtttt tctttaatcc tttaaaaatt ttcatatttt aacatctcct ttaatgactc
    19981 aaattttcaa tccattatca actagcgcaa ggtatcttaa ttattaatat ttggtcaata
    20041 gatattcttt catgtcatgc tgttatcagg ttataaccat cttgatggcc aaccacaaga
    20101 actttcactc agtttaataa aaattaactt atcaatatcc ggaattaaga aatgacagaa
    20161 tagttgaaca cattccaatc caaccagccc aatcaataat ctttacattt tcatagaaga
    20221 agtttgcttc cccgttgtca ttttctggct ataagggtag acttgcgttt gataaataaa
    20281 gtcaaagtcc cggtggcaca gatggatagc gcagccccct cctaaggggc aggtcgcagg
    20341 ttcgaatcct gcccgggacg ccatttatta aagggtctat tccaaagaaa cttacaagat
    20401 tatacaattt aataaatcgg agctttaaaa atattgtaac ctaaagcacc cttgctttaa
    20461 tttacatttc acagcctatt aaacttttac gccctatata gggatggtgt actctgctca
    20521 ttaaactctt ctgtacaatg agaagaggtg ttatttaatc ctggcagacc ttttaataga
    20581 tcaatttcct ttcttatttc tttactgaaa ttaatctcct gttgattact gcttggtttc
    20641 gccaatggag aagcaaggaa tgcgtcgtta aattttttca atctaactgc cgggtcggca
    20701 ttttctgatt ttatatcaaa ccatgttcta cccagatcta cttgagcttt agtaatctct
    20761 cctttgagtg acattaatcg atcaatagcg ttttccacat gctgagacca aggtttgact
    20821 ccctctcctt gtttaaaact ttgcaatctt gatttaaata acatggtctt ttctttcaat
    20881 tgctcttgtt gctgactgct gtttgtcaat atttttgctg ctttttcatc aaatggctgt
    20941 ggtttataat ctgcatcaat catacttttc aattgcatat cacaaaatgc tttacctacc
    21001 tcgatcacgc cctctttttc tttatcatta atatgcattt gcgcagtcgt tacggaaatg
    21061 ggaggtgcca ccataacaaa gagatttcca ttatctatgt atttcagcat ttctcttttc
    21121 tgttctttta cagcaccctc aacatcaagt ttacataata tttttttaac aaaatctcct
    21181 aaatactcct taatcctttc cataaaagat ggatttttaa attccttttc tgtgatgtcc
    21241 aattgattct cgcaagaaac cccaattgta gttacaacgc ctggagtata agcttcttcc
    21301 ttattaaaga agatattgac tggtaaatta ttggcagcac cgccatcaat atattttctt
    21361 ccttcataga ttaccggatc aaaaactcct ggcaatgacg cagagatacg aactgcaata
    21421 gaaacaggca tgtcagcatc tttctcatga gaaaaaatcc gtaactcgcc attttcatct
    21481 gttccggtaa tgtgcaattc cttgaatcgc tgaggatcgt attgatgtaa cgtgtgtaaa
    21541 tgaccaaaag ttaaatcaaa attcggatca tgcaatccgt ttatgatttt ttgggtgtct
    21601 tctacaatct gttgtctttt tgcaagatta atatattcag cgctcccttt atcctcaatt
    21661 gcattgagct tctcgcggac atttttcaat tcattatcca gagattcagg aaaatgcgtg
    21721 aaaatagcca tcctcatgac atgctccatc gcttcaacta atttggttcc tttagaagca
    21781 acagggaaag ttaacttgga aggttttgtg accagttttg cttctgcaag actggactta
    21841 gcatctaact gcttgtccgt ttgctcatga cttaatgaag tataagctgc agaagaatct
    21901 gatggtagca ttttattgct tttaaataat tctattaata ttccagctag aaaacctttt
    21961 ttgtccataa ataattttgc taactttcta gttaatggat tatcaacaaa atcctctaag
    22021 ctattcgcac tacaaaaata ttccattaaa tcggctgagc caccgcaagc gactatcgct
    22081 gcggtcattg cacccgcaga gcttccagca acattttcaa tgttttctaa taccccttgt
    22141 tcagacaagg attgcaatgc tccaacataa gctatccctt tagagcctcc tccgcgaaat
    22201 acgaggtttt ttgcagtact caattttcct agatttacag atggctctgc tgatgtacca
    22261 ttttgactat ttaccgtttt cataatttca cctgcttatt gggtatttaa tacatagtaa
    22321 caggtgaata tgaacaggat gtgacatgct tatgagttct ttttataggt tataacttat
    22381 agttatgttg attgatttac agcaatggtt aagttcgcat cagtttattc aacactactc
    22441 agtataaaag atgaaatact ctatttttga tatgctttta caaaaagtta aataatgata
    22501 atccttgaat tcgtgtaaag cttaactgag ccgcctggag attgactagt tgtaaattca
    22561 attccgttgc aacagcaaca ggatcaattt ctctgagttt ttttaatgtc gcagcactga
    22621 tatccaaata atcattattc gctttttcag cagtttccaa ttgattgagc cttgcgccca
    22681 aatcagactg tacgctcaaa atgtgaccta aagcactgtc aatctgagct aacaattgat
    22741 tattttcagt ttgagtagct gctttttcta cagaggaggt atagggttta tttaagttat
    22801 ttatcatgcg ctgtacagta gagaaaatag attcattttt tgctggacta attgaaaatg
    22861 aatcccctgc tttgggcaag ccagatacta ccatttccat accattaaaa ccaatggcac
    22921 taccctcctg atataatggt gcatcatccg gtaaaccgct tgggggtatc acattaccac
    22981 tgagagtacc actcaccatg actaccaggt taccctgaga atttaaagca aaagtcattg
    23041 tgtaattatc aggcacaaaa gctgcttcat tagtcacgga accagaactg actgaagctg
    23101 ttcctgtatt aggcgttagc gtttccctta tggcaaaacg cccatttccg cttggaatac
    23161 gcataaatac gttgtcaccg gtatcattaa ctgctaccag caaactcgtt gtaactgctt
    23221 gaaaacgctg tgtgctatct ccgttataaa catattgtcc cgagagattc aatgacactg
    23281 gctgtgttag cgatttacta ccactgaaca tataacttcc attactgtcc ttggtgttgg
    23341 cataatcaag taattgattt aataaagcct gggcttcaac agcaagggtt tttctatcct
    23401 cttcggaaag actgggatta ccagcctgaa tttgtatttc tcgtaagcga tgaagtgaat
    23461 taactgcatt ggataatatc ccttcctcta aacgtaaggc actgtcggct gcttgacgat
    23521 tattttggaa cagctctatg ttgttaattc gctgtttaat cagctcaatt tgtgccgatg
    23581 ccactggatc atcagatgga gtccgaactc ttatgccgct ggcttgttga tcctgaagcc
    23641 ttgccaatct ctcttgttgg gtcaacaaat tatccaaacc ccgctgatat atctgattgg
    23701 ttgaaatacg cattcatcac ctcatgatat cgaataacaa gttcataatt tgattggata
    23761 tttccatcaa ttttcccgct gcctgataag cctgttgaaa gacaagcaaa ttggctccct
    23821 cctcatccag attgacccca cttttgctat cctgaaaatc caatgcctgc ttatgaagta
    23881 tatcggcaga ttcaaagctg gttttagctt gattggttct gcctcccact tcagcaagca
    23941 aattaccata tctatcaaat aaggtttcgc tgccatttga aaaaatcttg ttttgttgta
    24001 tgttgccaag gatcaagcca ttgcgattat caccaaatcc accagtattg taatcagtag
    24061 taaattggtc tccggatttg ggaattccgg ataaaacaac tgaataagaa ggagttattc
    24121 catcgggaat ttgaatgaca ttgtttgtat ttggtataaa ggcaaacgga ccggctgttg
    24181 tactgtccgt tacattaacc aggttgtatt gagtatccga aatgaaatct atcctgaatt
    24241 gtttgttaac agaagccgta ttcaatactg gccctaaaat aatttgacct tgcccggtat
    24301 tatttaatga cgccgttgtt ttcactggag aagccagcgc aatttcataa gcatccttaa
    24361 tttccaaggc aaaatctctg gctgctcctc tggtaggggt tagagtataa tggtcattat
    24421 ttgccaattg cgataaatcg tttactgtaa tcgtcattcc atctataact acttgccctg
    24481 ctggtggggc tggtggcgag cttgaccagg ttaaggttgt agaagtacca tctgattttc
    24541 ttatcaatcg caattcatta gccccagtat cgctaattat cagatcgtaa tcgcttaatt
    24601 tcacttggga tatatctgag atattgacag ataagacagc agttccacta ttgtcagctg
    24661 aagctgtaga tcgtttcagc atttgtcccg gggaattaaa atcagtaaaa aaatccttgc
    24721 caatttggct attcatgtcc attcccaact tatgttgggt attaaatgtc tgagctaaac
    24781 caatggccat ttgacctatt aattggctgg cctgtcccaa aacatttttc tcataatcta
    24841 taagaccgcc taacataccg gtagtgagcc tgtctgtaat atcgacttgg ttatttcctc
    24901 cactacttaa aaagatcctt gttccaaaaa tagaatcttt acctgtacct actagcaaat
    24961 cgcgttgctg ggttcctgcc actagcatat ctccgctggc aattccaaca ctaatcgtac
    25021 catcaccctg atcaaaaata ctaagatcag tataaccaga taattgtttg agcagctcgt
    25081 ctctatggtc aagtaattca ggtatgttgt tattccctaa taattttcca ttgacttcag
    25141 ccaactcttt tgttatgcga ttaattattt ttactgactc tgttagttgc aatgttgaat
    25201 tacgctcata ctcttcaagt tttgtttgta gcgaattaaa ttgctgagct aataactgac
    25261 tctgttttag taccacacct cttgtcgcta tattatcggg agtactgttc aattggccta
    25321 ttgaatcaaa aaaagtttgt aaaggaaccg aaatacttga tccatcctgt gaaagcaatt
    25381 tatctatctg aattgcctga ttataaaacg catcatactg agttctataa ctcaaggtac
    25441 ttctaacctg agcattggca aattgatcaa cgtttcgata aatcgatgca acagataccc
    25501 ctgctcctat gtatgaacca gcatagcgat ttgaggtaat aggtgtaaat tggatagatt
    25561 gtctgctata ccctctggtt ttaaaattag caatattatt gccagtaaca tctaaggcac
    25621 gctgaaaagc attcaatcct gaataggcaa tattaagtat agacatattt tgttcactcc
    25681 ctgaactaat tttttcttta acttgggcct aactattaac tttgttcgaa tgattcacat
    25741 cgttgtattg cctggttcaa ttcatcacca tgataaatag acaaaatctt attactataa
    25801 tttgggtcag tagcataccc tgccttatta agctcactga caaaaatctc aggattttct
    25861 gcattggcca aggccatctg gtatcgctca cttcccttaa ttaatgaaac atagtcatga
    25921 aaactatgct ctatggatgg atattttcta aaggaagcat tgatcttaat gggtgtatcg
    25981 gcaatgtatt ctgttgtttt aacctgaatt gactctactt cgctatgcga cccggttttt
    26041 atattaaata aattattact gcttgaacca tctgcatctc ttgtaacaaa tctaccccag
    26101 ccagtctcca atgccgcttg cgctaccaac agcttgggat ccaatccaat taatgatgca
    26161 gcctgttttg ctgtgggcca cacagatttt acgaaatcat caacaacaga taacgattct
    26221 tctgaattag tcactttagt attgttgacc tctgtagaag aattaactgg tttatttgct
    26281 ttatccccaa ctgaattttc cagttgttta gccagcagag ctgccaatcc tatcccttta
    26341 gactcggcaa tagtactagc atattgtgca tccagcatct cttgaaaggt tgcttcattc
    26401 ttaccactaa aaggactcga ttcatcaagg aaatgttgcc ccatcctcat gctttttaac
    26461 atggattgca agaatattcc ttcaaactgt ttagctacct cgggcaacgc ttcttttgca
    26521 ttgttttttg cctgaatttt taattcattt aacccttgaa aatcactcgt agcaatactt
    26581 tgtatggtca tatccatcac ctttatatga ctattaatgt agcactcaat gcgcccgcct
    26641 gttgtaaagc ttccagtatg gaaatcacat cagcaggtgt tgcaccaaca gcattgatcc
    26701 ctctgactat atctttcaaa gtggtaccct tgggtaagat aaaggcacgg ttattttttt
    26761 gctgaatatt gacttgtgat tgctgcgtcg acacagtccg ccctgaagca aaggcattag
    26821 gttgactgat aacgggagtc tctgtaatgc taacgaccaa attaccatga gatacggcag
    26881 cagatttaac aatcacattg cttgaaataa ccactgttcc agtcctggca ttaataataa
    26941 ttttagccat ggcttcgcct ggtttaaatt caatattctc aagtactgaa acataatcta
    27001 cgcgctggga taatttttta ggagctgtta ctaccacaga cccagcatct atagctttgg
    27061 ctgtgcctgg tcccattaac tcattgatag catcactcat tcgtttcgct gtagtgaaat
    27121 ccgggttatg caagttgtaa gtcagtgagt ttgagtaata aaaaggatta ggaatatcag
    27181 cttcaatcgt agcgccatta ggaattcttc ctccacttgg cacgttaaca gtgacacttg
    27241 aaccatcgct cccagaagca ctgataccag atactacaac gtttccctgc gacatcgcat
    27301 agacacgacc atccgctcct ttcaaaggag taagtaataa agttccacct aataagcttt
    27361 tagaatcgcc tattgatgaa atgttgacat ccatagtctg tccttttttc ataaagctgg
    27421 acaaattggc agtgaccatc actgctgcaa tgtttttgga attgagtcta actcctggag
    27481 gaatgttaat tcctagttga gtcaacatat tagcgaaact gtcttcagta aatttcgtgc
    27541 cagtcttatc ccctgtaccg cttaaaccga ctaccaaccc atacccgacc aattggttga
    27601 cacgaacacc agctaaagta gcgatgtctt tgattcgttc agcaaaaact tgagttgcaa
    27661 tcaaatgaat tgccaatatc catcgaataa ccagcattcg ccgcatctta attccttgtc
    27721 gtttgtaatc tcgataatta ccaattaagt cgggaataaa ggcccccata aaatccttga
    27781 taaccatcct tgagcattcg tattattaat ttggccagtt ccaccataag aaattctcgc
    27841 attggcaatt ctgtcagagg taatagtgtt atctgctttt atatcctggg gacgaactat
    27901 ccctgaaaga cgaacgaatt cattgccctg gttaattctg acccatttct caccttgaac
    27961 aaccatattg ccattcgcca acactttggc taccgtcact gatatactgc ccgctaactt
    28021 attgttttgt attgatctgc cttctccgtt aaactgcctt tggttatcca agtcaaaatc
    28081 catgctgtaa ccacttccca aagagatggg tctacccaaa aagagtttat ttgtgatttt
    28141 tgtcgtatca ttttttctct gagtggtagt cgcatttttc tgagcatcag ttttttcgat
    28201 taaatacacc gttaatatat cacccggatg ccttgccctc ggtgtttcaa acaaagggag
    28261 agccgtttca ctactataaa tagcaccact tacctttctt aattccttgg gatccggagt
    28321 tacaggataa gttggagcat aatcaggatt gtcgcctggt gccggtgggt gtaaggcttc
    28381 acacccaaac aacaaggctg tagctaagca agagacagct atatttaatc ggttcataac
    28441 ctatctcact tacagagttt gggttaaata ttgcaacata ctgtcaacgg tctgaatgct
    28501 ttttgctgtt atttcatagc ttctttgagc ctgaatcata ttaaccaatt cttcaaccac
    28561 attcacatta gaagcttcta atgaaccttg caataaagta cctaatccgg agttgccagg
    28621 gttatctgta atcggtgtac cgcttgctac agtttccgta tataaattct gaccaatggg
    28681 ttgcagcccc gcagggttta taaaatcggt taattggata tttcctataa cggatggcgc
    28741 attattccct gcgactaaag cactaaccgt gccatctgtc ccaatagtaa ttttggttgt
    28801 ttgtggcggt atcgtaatgt tgggctgaag aggataccca ttactattaa caatctggcc
    28861 tgtactatca gttttaaagc ttccatcacg tgtataggat tgtgtgccat ctggcattaa
    28921 gactgtaaaa aagccacgtc cttcgatagc aacatccaac gcattttgtg tattctgaag
    28981 actgccctgg ctgaatattt tttctgtagc aaccagatgc actcctgtcc ccatgtttat
    29041 accggtagga atttgcgaat tttgtgaaga ttgagcacca gcctggcgaa gattttgata
    29101 aattaaatcc tcgaataaag ctctaccctt tttaaacgca gttgtgttga cgttagcaag
    29161 attattcgca atagtagcaa tattcttatc ctgggcttcc aaacctgatt tactcaccca
    29221 taatgctggt tccataacgg cctcctgcta ttattcttat tattatatcg gccttaatta
    29281 tcatttcagt ttatcaaagc cttccgttcc taaaatcacc tgtgacacct aattattgga
    29341 aaacggttcg ccctcagtga aacaaattaa attaattaag tttactcttg caatagctgt
    29401 gccaattttt gtccattatc atcgactgtt gataataact tcatttgggc atcaaattca
    29461 cgaccagcac taatcatagc taccatttga tcaatcgctt ttacattact cccttccaat
    29521 gcaccgcttt gcaatttaat attactatta gcagtagccg cacctgattt cagttggatc
    29581 aaaccttcat catttttata gatattattt ctatccagcg taactaattt aatcctgtct
    29641 aagattgcca gagatttgac atcaccttct aaagggacaa tcgatatagt tccatccgaa
    29701 ccaatctcta tggattgagc aggcgggata gaaattgggc ctccatcacc caaaacaacc
    29761 ttgcctgagg cagtaattaa ctgcccatta ggattcaaac gcaaactgcc ccctctggta
    29821 taagcttcac gaccttggct gtcctgaaca gccatccatc cgtccccatc aatggccaca
    29881 tccaagtctc tgcctgtggt aataatctct ccaggagaag tatcaattcc gttcgcattt
    29941 tgagtgataa atgaatgagc gctgaattgg ttatttccat tcgcattatt catgtacatg
    30001 gtttgtgcct gatataaatc agccttaaac ccaggggtat taatatttgc caaattattg
    30061 gcaattattt cctgtctttt aaaatctgaa cggctaccag aaatggaatt atacaggatc
    30121 ggttccatga cttacctcct agcgaatatt gatgatcgtt tgagtaatcg catcaccggt
    30181 tcgaattgtt tgagcattcg cctgaaaatt acgctgagca ttaattaact tgaccaattc
    30241 accagtcaaa tccacatttg actcttcaag tcttcctgaa ttaattaatc ccaaaccgcc
    30301 actcccagga gcactaatca atggctgtcc tgaagcagta gtttcagccc agctggtatt
    30361 gcctatattt tgcaaacttt ctggatctgc aaaattagcc agctgaatct ggcccattgc
    30421 taaagattgg ccattcgtat aacgaccata gatcattcct gaatcatcaa tatccagtcc
    30481 agcaaggctt ccggtagtat agccattatt ataagccgac tgaacagcaa agggactacc
    30541 aaattgtgta ctatccgata aatcaatatt tagatttaaa ggactggaac cattgtttaa
    30601 gttgaatgac aaaggaatta aattattggg taaagcggcg tttgaggtat cgaatactcc
    30661 cgcaaacgag ccatcagaat taaagttagc tcggaataaa ttatttgtat tttgagcccc
    30721 cacattagga ggaacgtttt gattgtctat ctgaaatgct acataccatt gattttctgt
    30781 gccagcaggt gatgcggcat taggtgaacc agccaaggca gtagaatcag catgaataaa
    30841 atacatgctc aatacatgtg aatttcctaa actgtcatag attgttgacg aggtgacatt
    30901 gttataagta tcggttgccg gactagcccc tccgacccaa tccacattcg gcgctttgct
    30961 ttgagaattc agattaacgc ctactgagac atttgaactg gctctggggg taatattcgc
    31021 ggtgtttatt cttaaatcgc ccgatgctcc tgtaattgcc ccattagaat cagttagtaa
    31081 accagtcaac cgttgattat ttgcattgac tatatagttc tcattattca acttgaattg
    31141 cccggcccga gtataaatct tggctccttg atcacttaat ataaagaaac ccgaaccatt
    31201 cacagccaga tcgagcgtat tgtttgaggt acttaatgtt cctgtagcga atgattgatg
    31261 tacacgtgac agtttaacgc caccacctac agcgttgctg ccagagccat aagcgctgga
    31321 tgaataaata tctgcaaact cggctcttga gcctttaaat cctattgtgg cagagtttgc
    31381 aatattatta cctataactt ccaaatctct ggttgatgcc tgaattccac ttaatgctgt
    31441 attaaaaacc ataatagcct cctgctttat aattttttag catttgccct tgactgcttt
    31501 ataagcaatg cgcttatgac ttaagccatc gtttcaataa ggccacggtg actgaaatca
    31561 ttgatttata ctgatatttg ccttacctga cttaaataga ctgatcctac gcccgctaca
    31621 ttaagcttta gatcctcgcc attttgccca agactaacac tatcgacatt ggctgacgtc
    31681 atagttttca atgccacttc ttgtccgcca taagtaccag taacctttat tgtatatctt
    31741 cctgatgcta aacgttgatt actttggtca gtaccatccc aactaaattg gaaaaacccg
    31801 ggttctggtt gtcccaaggg aatagttttt atcaactcgc cagattccgt gtagattgcg
    31861 gcacgaagat tagaaacacc aggtgccata tcaatggcag cttttacatc tccttctgta
    31921 cccaggctca gggtattgct gtttactaac accttgcggc caaccaaagc ggatgcttga
    31981 agcgcttgat tagattgtag agatgaagct aattgttgga gtgattcttg catttttgtg
    32041 attccatcat tggtgctaaa ctgagccagt tgagataaaa actccccatt tgcctgtggt
    32101 tgcagaggat cttgattttg aacttgtgct accatcaaac gcaaaaaatc ctgttgcccc
    32161 aagttttgtc ttttacctga atcaatttga ttcaagccta aaccacctgc tgaattggaa
    32221 ccatttactg aattggtagt cattcccttc ccccttattc gcctaattgc agcgtccttt
    32281 gcataagttg tttggttgta ttaagtaatt caatattcat ttgataagaa cgagaagctg
    32341 aaatgatatt tgccatttct tcaacgtaat tgatatttga tgtatagaca aacccgtctt
    32401 tatcagctat tggactattt ggatcgtacc ttctgtgcgg ttctgcatca ctctcataaa
    32461 taccatccag tttcacgcca gccttaattt gctcccccat ccattgattt gcattctcct
    32521 ggactgactt gaaaacagga tatttggctt gatagacctc atctggacta cctgcttcaa
    32581 cattcgcatt actcatattg ccagcactgg tagtcaaacg cactgtttct gcggtcattg
    32641 cagaagccgc aatgtcaaaa attgcattta atgacatgat tattcccctt tcaatgcggt
    32701 cagcatggac ttgattttgc catttaagaa actcaagctg gcctgataat tcaatgcatt
    32761 tcgagcaaac tcggtagttt ccatatcttt atcaacggta ttaccatcta aagaagcatg
    32821 atgtgtcatt cggtatttca aatgagtcat aaaatcggca ttggtattaa tatgctggtc
    32881 cgaagttacc cttaactgct ggctgttacc ggccatagtt gctgtcagta cttcattaaa
    32941 atcaacatcc cgggctttaa aattcggtgt attaacattg gctatgttat tagcaagaac
    33001 tgatgccctc tgatctcttg caatcaacgc cttggcatga atcccaaaat aagaatcaag
    33061 attaatggcc atatttactc ctgtcttatt gttatttaag tcttaaccat catttgacat
    33121 tatgccaatt ttccaatgca ctatatggct tcatacttgt cttcaaacct cactgaaaca
    33181 taaaaatgat aaaaaaacct atttaaacaa agcaaacatt gtgccaatat ccaaaaaatg
    33241 agaaaatgaa gcatccaagc gctaattccc tatgcagagt ctcatcatgc caatctcaaa
    33301 gacacttcct tataatgcaa tagagcaaat taaatcttat ctgctccaac tccaaaacac
    33361 aatttgtgtc tcactggagt caattgatgg caaaaccaga ttccatgagg attcctggca
    33421 gcgagctgct ggaggtggag gaaaaacaag aataatggcg aatgggaatg tctttgaaaa
    33481 agccggcgtc aatttttcac atgtttcagg ggaacaatta ccagcatcag ccagtgcaca
    33541 tagagaagaa ttggcaggaa gacatttcag cgcattaggg gtatctctgg tcattcatcc
    33601 tcaaaacccc tatgtgccaa caacacatgc caatgttcga ttttttgtcg ctgaaaagga
    33661 ggattcagaa ccagtctggt ggtttggtgg aggatttgat ttaacccctt attatggatt
    33721 tgttgaagac tgtgagcatt ggcatcaaac ggcattaaat gcctgtttac cttttggaga
    33781 aacgatttac ccaaaattca agcgttggtg cgatgattat ttttttatta agcacagaaa
    33841 tgaagcacgt gggattggcg gcttattttt tgatgattac aatgaaatca gctttgatca
    33901 cagctttgaa ctcatgcgta gcataggcga tcattttatt ctggcttatg aacccatagt
    33961 ggctcgccgt aaagacatcc cttttggcaa cagggaaaaa gcatttcaga attaccgcag
    34021 aggccgttat gcggagttca atttagtcta tgatcgaggc actttatttg gtctgcaatc
    34081 tggcggaagg actgagtcca tattgatgtc cctgcctccc attgttcatt gggaatacaa
    34141 ttggcatcct gaaaaaggca gtgatgaaga aaaattatac acggattttt tacctgcaaa
    34201 agattggttg aaaaaggagt aaaacaccaa actcaaaaat aaatgatatc cttctcccct
    34261 tacctgaaaa tttcgaggag ccagtataca tgcagtaaat aagcaccgcg aaacgtttac
    34321 aacgcgcaat aaaatggaag agacagttta tgcaagagat ctgttgttaa gctatctcct
    34381 ctgagcttct tcttaaggtt cttaacccaa gaaacaagaa catcgcagca accaaattta
    34441 aaagacaaag tatcaaaaaa acctgaggaa ttgaaaagct aaaaaacaat aacagcatga
    34501 ctaacaaagt tcccatcacc ataaacaagg cattgaaaat attgttcgcc gcaatcgttc
    34561 tagccctgtt ctcaactgga cttataattt gcaagtaagt atacaaggga actacaaata
    34621 gtcctgcaca aaatgctaac ataaataaat caaaagcaat tcgccaatgg gtaaatgaag
    34681 taaaaaaatt aaataagtta aataaggggg tctttaaatc atgacccgca ggagatgacc
    34741 aatacaaatc aaaagcaaaa aaagtaaaag cgagcatggc cattgggaca gcagaaagat
    34801 taacttgtcc tttcaataac caatttatag taattgatcc cagagcaatg cctattgaaa
    34861 ataaggcaag aaatagagca aaaacatgag cgctagcccc caaaacataa tgggtataat
    34921 caggtaattt ggtcagcatg atagcgccaa ttaaccaaaa ccaggaaata gttaatatgg
    34981 atataagaat tccatattct tttttcgcct cctttagcat cttcactgtg gcccgccata
    35041 aattaaaatc cacttttaat tcatgaagtg ctgatggtgc aggaggtata aacaggctgg
    35101 agaccaaacc agaaaaagcg gcacttaagg tcataataat cgcgatataa ggggtagcct
    35161 ccttccctcc aacggttaac gtacccaatg tagtgcctaa taaaatagca ataaaagtgc
    35221 tggcttcaat taggcctgtc gctgctaata aatttttctt aggcaaatgg tctggtaaaa
    35281 tcgcatattt gataggtcca aagaaagaag aatgtacccc catcccagtc aaagtacaca
    35341 tcatcaagaa aatgctccca ctgtataatg caatacctcc aataatcatt aataacactt
    35401 caagcacctt aaccagacga gtcaacaaag ccttgtcata tttatctgcc aattgtccgg
    35461 aagtagcgga aaagataaag aaaggtagaa tgaataaagc gcctgcaata gcctgataat
    35521 attccgactg ttcttgtgta tggcttaaat gatagctaat catagtcaac atcgctagct
    35581 tataagcatt atcgttaaaa gcaccaaaaa attgggtcag gaaaaggggc aaaaattttc
    35641 tttgtttgag aagaccaata aaacctgctg ccattagagc tccatttgtg ctttaaaact
    35701 aaagttaagt taacaaggat atttatgtat tgaatgaaag taaatgataa ataccagata
    35761 aaaagcttat aggatgccac tcccactatt taatttacaa atgcagcaca ttgtgattgt
    35821 tatttcgcga tattaatttt ggacgaattt atttcaggaa ttggaatgac aaaagaacat
    35881 acaggagatt tacactagcc aacaccccaa ccggctcatc catttttact tatcatttga
    35941 aaaataaaat tagcgcggtc tttaataggg catttgggaa cctctaataa cacataccca
    36001 caatcaaaat acccctcttt tacagcataa taagtttgca acgcttcttg ataatcctgt
    36061 tggcgctcat cgtcattttc ataaatttca ggccagggag ggaaaataaa gactgtttta
    36121 ttataacgaa atcgtccaac agcctcattc acttctttac tcgcctcacc acaaaatgct
    36181 ttggagtaac catacaaatc cgggattccc cgatcgaaaa atacaatttt ttcctctgac
    36241 tgcatcttac aataatctgc aatcgattgt tcaagcatca agtctcgaaa cgcttttcta
    36301 tttccagtat gtatcgcatc accaccatca gcctgttgtt tttgaataat agaacgtgct
    36361 acttcagaaa ctgttaaata gccccaagta tttaactcat tcaatacggc agttttgcca
    36421 gagccaggtc ctcccgtaaa tataaaaaaa ttagtgcata gcattaaatc cgctaccata
    36481 acctgtcata cctttaaaaa ttgctcataa attaaattac aaagctttta gtgtactcat
    36541 atcaattctc ttaagctttt atccagctta tctgtttcgc aataataaaa atgagtatcc
    36601 aaagggcaca gctcaaattc tttaggtaaa gaattcttat taacaagaac aaatccattc
    36661 ttttcataaa aacgtcttgc tgcgtttaac tgggctactg tccccaaaaa cagcttttta
    36721 aatccatgtt tcatggcgtt tctaactaaa gtcagcatta atttttgagc taatcctaac
    36781 cctcgatact taggcgcaat aaaaaatttt tttacttccc cttcagtatg atttaacttc
    36841 tttaaaccga tagaaccgat aatcccccct tgttcgtcaa ccgcatacca aaaattacaa
    36901 ctgctataat agcaatactc ctcttcggcc tttaaaattg atgcattgat ttcaggagta
    36961 atcgaaagat gaaactcatt cacttgaata ttttcaatca tattaacaat ttgtttacgc
    37021 aaagctctgg aagttgacaa gcgtaaaatt ctaatctgat cacgaattaa acgactttgt
    37081 tctaaagctt gagcatactt tccaattgca gtaattactt gttccctctc ttcgtcagtt
    37141 aaataatgaa atgctctttt tattttagta ttagaatatt catcaatata atttaccttt
    37201 tccttaccct tatcagtgac tcttaaaaaa cgctctctct tatccagccc ttcgtttacc
    37261 gtaaccaatt catcattaat caaagaattc actatccgcg acagagtagg taatgaaact
    37321 aacaacaatt gactcaattt ggaaatagta atattgggtt ctttatttat ttcaattaaa
    37381 gtatgccaat aagaaggctg ctcctttgca gctaacttat ttaattgcaa catacctaat
    37441 tctcgtacca attttcttga atattgcctg agtaaatcaa ttggatcatc aatcatcttg
    37501 cctctcat
//
LOCUS       DACVWI010000010        36887 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.010, whole genome shotgun sequence.
ACCESSION   DACVWI010000010 DACVWI010000000
VERSION     DACVWI010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 36887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36887
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.010"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..754
                     /locus_tag="JBH85_01750"
     CDS             <1..754
                     /locus_tag="JBH85_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HAU0944910.1"
                     /translation="ESSWMANEKNYFLTKYDCNVIVKDESLVRGVLQKQEVFNHPIFD
                     YLMHDASIEDLKKFAYSESIMNLEFFDYLALAVIGVSAQAKVEIMANLWDEAGQGCAE
                     KFHTVLFQNFLNDLGITYDRKQILEDLSWEGVAGINLFNYFSIYPFNKTKYFGMLAAT
                     EMLDPPHYNKLIKGIMRIFSSHNIDHSYYTEHELVDAQHASGWLNHVVIPELARKPYK
                     TQDFWLGFYMRLDSTKKYYDQLLNSLIMKKAA"
     gene            760..1581
                     /locus_tag="JBH85_01755"
     CDS             760..1581
                     /locus_tag="JBH85_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0944911.1"
                     /translation="MMSYMLVSNEKVIAEEWKKYAGYTVRPLPSTCAYYKDLIQSNSN
                     KDSFLIYGGTPEIRSLFQESNLKVTLTDQSELIIRAMGYLTMGAASIAANEELVVTNW
                     LNLEGIANDSCDFLIGDDAINMVEWTQFDLFLSNANRVLKSNGLFICHLLVKPQECFI
                     TNTIDDVRREYKEGVIRTKYDLASRLNFICYDTNSYAMGWQNTIEQLGINQLDQFKPS
                     FDFVGTFGRCNSKFYCPPQDAFERLLNNYFHIEEVFYPHEYEYCQFEPVYVLRKK"
     gene            1472..2902
                     /locus_tag="JBH85_01760"
     CDS             1472..2902
                     /locus_tag="JBH85_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HAU0944912.1"
                     /translation="MHLSVYSITISILRKYFIHMSMSIVSSNQFMYYVKNSIRNLHMS
                     IHLINYTTQPEFIKLIVQEYKNFDLTKKTILFIEPYGAVLSLLRRGLEKKYNIIVLTA
                     NSDFRVVPEEFLNQAALNINIDTANNNSVLELAGTLQQHMSIDAVIPGFEYFVPIASR
                     VSALLKVPGIDCKHVLNLRRKDLMRAALNKAGLNSPRYYLVTSLDDINEAVDYIGFPA
                     ICKPIDAAGSVHVKKVKNKKELLEAANRILNGNDVLWGHKLSSSLLLEEYIDGKEYSL
                     EGTVQDGVIAHFSTTEKFVSDQSEFIEIGHIVNAPIEQQLHTKIQNYIDQVIKILGAD
                     NCPFHAEVRLRRDGEPVLMEIAARLAGDKIADLLCLSRGINYFDYVYAAYLGIKMPLV
                     EMKNNYAGIRFFYRPHTDMFTIVTGMDAAKLQTIEDIAIYYNAHVAIPEFPKPLRRLG
                     HVIAKSEDYNKLSKMLHDIDSDIHFN"
     gene            2899..3513
                     /locus_tag="JBH85_01765"
     CDS             2899..3513
                     /locus_tag="JBH85_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HAU0944913.1"
                     /translation="MIKIKENRMSQSNVIIVHGAYGHPFENWFNWMKTELESLGIECF
                     VPQLPTPDGQELKNWLHVFNSTVSPMITHDTILIGHSLGSAFLLRWLEQANQSVFSTI
                     LAGSFIGTVGIQKFDKINESFFENGFDWHSIINKSKQFFCYHGSNDPYISRSNFNFIA
                     NNLQARKIIISQGGHLNEAAGFSSFPQLLIQLKSLLGINYGKFI"
     gene            3497..4444
                     /locus_tag="JBH85_01770"
     CDS             3497..4444
                     /locus_tag="JBH85_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAU0944914.1"
                     /translation="MANLFSFLFLGTLGWGMSLYLMKILLVSLTPTEIVLYRMAIGAA
                     SLFILAKLFKLKTDNIRGLILDGIIVGTFNMTLPFYLTTYAVKTVSSSLASVINGLTP
                     LCTLILGMVFFSSKQKLGVLNLLSIVLGFIGIIIINSDVSIYQGSAVEFIALLATTIS
                     YGVTANYFKYHARTKEPILVSAVSAFVSAITMLIFKCATESSINSWGIPQGMNQIIAL
                     LWLGIIGSGFCLYLYCSLIQNAGAVFASMITYLMTITGVIMGMIFLHETISHQVMIGC
                     IFIFFSLILVNHAPLLEKILVSISRQISLKSARRYELNQ"
     gene            complement(4553..4628)
                     /locus_tag="JBH85_01775"
     tRNA            complement(4553..4628)
                     /locus_tag="JBH85_01775"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4593..4595),aa:Asn,seq:gtt)
     gene            complement(4688..5866)
                     /locus_tag="JBH85_01780"
     CDS             complement(4688..5866)
                     /locus_tag="JBH85_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HAU0944915.1"
                     /translation="MDIALAKRVQKVKPSPTLAVAAKAAQMKAQGLDIIGLGTGEPDF
                     DTPQHIKLAAISAIEAGDTKYTAVDGIVELKEAVKNKFKRDNELDYQLNQILVSVGGK
                     QSCYNLCQAYLNPGDEVIIPAPYWVSYPDMVLLADGVPVIIETTPAQRYKINAQQLEQ
                     AITPKTRMIFLNSPSNPSGIAYTQNELKELGDVLKKHPQILIATDDMYEHIIWSQPFT
                     NILNACPELYDRTIVLNGVSKAYAMTGWRIGYAAGPAPLINAMKTIQSQSTSNPCSIA
                     QRAAVAALNGSNESIEEMVNAFHQRHDYVADRLQSIDGIEVIPADGTFYIFPSVQAII
                     EKRGYANDIEFSEKLLNEVGVALVPGSAFGTEGCIRISFATGIDTLKDALNRLQRFCS
                     "
     gene            5913..7904
                     /gene="uvrB"
                     /locus_tag="JBH85_01785"
     CDS             5913..7904
                     /gene="uvrB"
                     /locus_tag="JBH85_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HAU0944916.1"
                     /translation="MKDLFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSG
                     KTFTIAHVIQAMKRPTLIMAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYV
                     PASDTFIEKDASINEHIEQMRLSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLH
                     LSRGEQSDQRKILKRLAEMQYTRTNLSLERGQFRVHGDVIDIFPADSEKEAIRIELFD
                     DEVDNIARFDPLTGEILQRLPRVTIFPKTHYVTPRERILETVEKVKVELQERLAELNA
                     QNKLVEAQRLEQRTCFDIEMMLELGYCSGIENYSRYLSNREAGEAPPTLFDYLPPEAL
                     LIIDESHVTVPQIGGMYRGDRARKETLVNYGFRLPSALDNRPLRFEEFEERSPQTIYI
                     SATPGPYEQEHSDNVAEQVVRPTGLIDPEVEIRPVKTQVDDLMSEIRQVIAQGSRILV
                     TTLTKRMAEDLTEYLSEHGIKVRYLHSDVDTVERMEIIRDLRLGEFDVLVGINLLREG
                     LDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGRAILYADTITGSMQRALTE
                     TERRREKQKAFNLEHGITPKGINKSVEDILEGAYIGKRKTVVAEKSPQYTHWSPQELV
                     KQINALEKQMYSHAQNMEFELAAKIRDEYLLLKEQLMKI"
     gene            complement(7899..8061)
                     /gene="ssrS"
                     /locus_tag="JBH85_01790"
     ncRNA           complement(7899..8061)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="JBH85_01790"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            8259..9860
                     /locus_tag="JBH85_01795"
     CDS             8259..9860
                     /locus_tag="JBH85_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HAU0944917.1"
                     /translation="MNIKSNLAYSSVILKGHVNRYAFLGLLISVGSILIASCIVSYQL
                     TGSVSLGGFIQAQRSNPAIWILDLTPFMFVYWGQAFCYGLVNKAESLLVDKTKELLNI
                     SGNLELKLKYDSLTNLPNNRLLNEKIRLAIEQLGSQGELAVIVIKINDLNYNFSSFNT
                     NNIVKQFAEKLKSVLIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLEINELLIHL
                     LTLLNSNLMVDGININLATTVGAAIYPIHGEEDDVLLNHAIIAVYQARKENKSYAIYS
                     PEMEEDLINNRIVMNELQRSIENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLL
                     SAEKFMPLIEGTSLIHNLTTLMLKEVIKQLAAWHDAGHKIFVSANLSVNRGLPDLIEK
                     LLNDYEIAPQFLKLEFTERTCLAEQMVTSEVFERLSTMGIKLCIDDFCSENSSFIYLT
                     DFPIENIKVEKSFVLKIAKDAKKAKIVEAIVKLAQTLGWEPLADGIADQNALEKLRDL
                     GCLYGQGLYFSRAVNVAEFTSLLKK"
     gene            complement(9952..11523)
                     /locus_tag="JBH85_01800"
     CDS             complement(9952..11523)
                     /locus_tag="JBH85_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding glutamate synthase family protein"
                     /protein_id="HAU0944918.1"
                     /translation="MRRQWYIGFGVILLCLFALFAMLQDIVWFFAFLIPIVILWIYDV
                     LQTKHTILRNFPVLGHVRYFLEFLRPEIQQYFIATDESELPFNRETRSMIYQRAKNVR
                     DTIPFGTERDILSVGYTWALHSLSPKHSSEVEPRIDVGGPDCKKPYNASRLNVSAMSF
                     GSLSANAIMALNKGAKLGGFYHNTGEGGLSPYHLQGGDIVFQIGTAYFGCRDDKGDFD
                     ENEFIKEASRDEVKMIEIKLSQGAKPSHGGILPAAKLTEEIAKVRKVPMGKDVLSPIA
                     HTAFDNPVGLLHFVKRLRDLSGGKPIGFKLCLGRRHEFMAICKAMLKTNILPDFITID
                     GAEGGTGAAPVEYTNFIGTPLEAGLVFVHNALIGTGVRDKIRVICSGKVTNGFDLLTN
                     IALGADICNSARAMMMAIGCIQSKQCNANTCPTGVATQKKRLQYGLVVDQKKFLVANF
                     HNNTIKSFLEMVGALGLNNPSDLKPSHIMRRIGVDEVKSFDQIYTYVKPGQFLQGDIP
                     EDYRIHWEHANPDKF"
     gene            complement(11601..11915)
                     /locus_tag="JBH85_01805"
     CDS             complement(11601..11915)
                     /locus_tag="JBH85_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HAU0944919.1"
                     /translation="MTNIKLCKIKLLNKIYEIKCPDGEEVSLILAAEKLNEKMQNNKN
                     KFKHLDNFHILLLAALDIGHELIVCKNEQEQQRLQVTQFISSLENKINKAVVGSETDS
                     NP"
     gene            12071..12652
                     /locus_tag="JBH85_01810"
     CDS             12071..12652
                     /locus_tag="JBH85_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HAU0944920.1"
                     /translation="MSLDNDSLHLPKYDDFVQSISVLALTMSGSELHGIMCGYLCAGA
                     DSQGEAYIRALLNNKKDEQSRNALLSMFSVFSISQQQMNNFDFEFEMLLPDDDESLVT
                     RAQAFSEWCEGFTQGLTIAGVGMEQFYEEESQDALQHLMEFAELDCESLEVGEEDERA
                     LMEVSEYTRMAVLRLHSDLVLHERELGDSGTTH"
     gene            12739..14067
                     /gene="pepP"
                     /locus_tag="JBH85_01815"
     CDS             12739..14067
                     /gene="pepP"
                     /locus_tag="JBH85_01815"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HAU0944921.1"
                     /translation="MKREIDMISQQEYKARRKKLAAQLPDDSVAVIPAAHEVLRSGDT
                     HYRFRQDSDFYYLTGFNEPDALLVIIAGKDSQSILFNRPRNPAEEQWTGKRLGQDGAL
                     QELGVQAAYPLSSITEELPKLFSGKSAIYYDLGRNLSLEKKIRHVLSSLKAQVRRGIK
                     APESLCDLEPILSEMRLLKSDAELELMRQAARISVAAHKRAMQVCQKMEYEYQLEAEL
                     IYEFSRHGCRSVAYDPIVGGGANACILHYTENNKPLRRGDLVLIDAGGEYGSYAADIT
                     RTFPVSGTFSPEQKIIYELVLKAQKAGIAAIEPGLPWNHIQQTIIRILTEGLCDIGIL
                     KGDLEELIKNEAYKPFYMHNSGHWLGLDVHDVGRYKINNEWRPLEAGMVLTVEPGLYI
                     SAGMEGVDKRWWDIGVRIEDDILVTRAGYEVLTGDLPVNVDDIEALMRGE"
     gene            14057..15259
                     /gene="ubiH"
                     /locus_tag="JBH85_01820"
                     /gene_synonym="visB"
     CDS             14057..15259
                     /gene="ubiH"
                     /locus_tag="JBH85_01820"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HAU0944922.1"
                     /translation="MANKETDILIIGGGLTGASLSLALQGLGFSVTLVESRPYSDKVN
                     PDFDARSLALSPASQRILAMLGVWEILKEYTTPIHMIHVSDQHRFGASRLHGEKNSPL
                     GYVVEMQYINRALSILINKEHLLTPAALKSIDFNNSTATVAHGDDMISIRAQLIVAAD
                     GTESMTRYLCNLPVKIKDYAQDAIVANVGLIKPHGNRAFERFTPNGPLALLPMMNDKM
                     SLVWASKPEEAKRLVMLNDDDFLRELQTAFGYRLGRFGKVGKRYSYPLKQVLMPQQTK
                     WPVVFVGNAAHTLHPVAGQGFNLGLRDIAALAQCISQKGLNPQMLEHYLQLRAHDQQM
                     ITWLTDGLIHLFTSRLPGMGVARNLGLLALDNIPALKNLLARYARGFGGITPDLVCEI
                     ALSAGEFQ"
     gene            15256..16419
                     /locus_tag="JBH85_01825"
     CDS             15256..16419
                     /locus_tag="JBH85_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiH/UbiF/VisC/COQ6 family ubiquinone
                     biosynthesis hydroxylase"
                     /protein_id="HAU0944923.1"
                     /translation="MSQHFDVLVIGGGIVGLTAALAMAQRHYTVAVIDAGTLMVNTDK
                     SDLRVYAINKASKMLLSELEVWQHLNDARVAPYNKMHVWDGVSGAYIDFDSRSIAEPN
                     LGAIIEESILKQALLRRISSESKISLFPQSVIDEVCHLERSIKISGQNTAWEGQLLMI
                     ADGANSPMRHKLKVDVTSWSYEQQALVATVSSEKSHQNTAFQVFHPDGPLAFLPLSNL
                     NQCSIVWSTHADNAMRLKLLDDNEFSRELTKAFGGQLGQIKVVSSRHQFPLQMRHVKQ
                     YAGHRWLLLGDAAHTIHPLAGLGLNVGLADVKSWLTCLEMGKDELISKKVLGAYQRER
                     KHSVWQIILLMEGFKRLFGTSASPVTSLRSLGLRACNEFIPIKRLFMRQASGL"
     gene            16597..17364
                     /gene="ceg3"
                     /locus_tag="JBH85_01830"
     CDS             16597..17364
                     /gene="ceg3"
                     /locus_tag="JBH85_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg3"
                     /protein_id="HAU0944924.1"
                     /translation="MNRLKFFSKFHNALLKFESSISNLSDPLVGFKIKELQTKKILVR
                     ADGRSLDHLHKLGGLPQRVDSEKLEKVRITDVERYQKFNLNPFGWGACASTEDLRQFL
                     ETYPELTKQAWVHKFYGSSTSLLTLKSEVGIGCGEHDGEKEELVVDSVSFGQIIASTC
                     PKYRDKYLDGGVVPNAMKDFNPKVPETMKLGDFSSEKSTLEWLLINDCEEEFAKLCKE
                     VYGDTPLKILLRRFDGDQYLADAVTYYVKESSLSPRV"
     gene            complement(17354..18679)
                     /locus_tag="JBH85_01835"
     CDS             complement(17354..18679)
                     /locus_tag="JBH85_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0081 family Dot/Icm T4SS effector"
                     /protein_id="HAU0944925.1"
                     /translation="MRSKFFSFFTRASRPMKAIPPKIWFETQLKGSGLDKKFQIDELI
                     ETQSSVRVFANKKYLPDTETINEALTKVTAVNVSGDKSGYFQNGLPFPNEAGYFEKIP
                     VGHPELLSPIERLTGSKKIVSSHSLVTASGGYPLTNPLLPYRKPIRVSIFSLAGPSFE
                     NNYLHYRLFLLDSVQKIIDSPLFSHLHDGLPIQFDEAKKELGEYDTNKLMARIRLGFP
                     YLARFSSGGFYPSFSKSNAIIFLSEAYFRYQLEDVSLLLASVNQTGKETGKAALLKAT
                     AVGMGFFAKIDCGYDIQHIIFPYYLRAYKKLLSEHKFPWIAKIEFPIFNEIQQEQFDS
                     IFEDYDGPTKVYRSTRDVLEFREEEIEKYLPAAINPSDAFALTGNEWGYGSVESMIGN
                     NSSIRFDQVHHMNPLILDPSHHVEAQINKDHGVELTVNPRPQSSSSIKL"
     gene            18854..19417
                     /locus_tag="JBH85_01840"
     CDS             18854..19417
                     /locus_tag="JBH85_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944926.1"
                     /translation="MSQIKTHVLKLIVDLFAKCICFAIMQYIDDLNGEFMFGRLWLRL
                     PVNKPTLDLSKMVLGRMPAETTFESVKREFEQELRRVGLKRFQENIHAEQLILEQLLK
                     QREEMTKKIDEKCLRPALQRSENGYDVTGLYWSRMQGELSKIQSKKERVELDETIDWL
                     YARRRFLKEQNNLSLNKEPAHSASPAL"
     gene            complement(19414..20361)
                     /locus_tag="JBH85_01845"
     CDS             complement(19414..20361)
                     /locus_tag="JBH85_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-glutamate ligase-like protein"
                     /protein_id="HAU0944927.1"
                     /translation="MINLFRRLKNHGVLSINQRNTDFVLRYNPRKLFPLVDDKLKTKK
                     LALKAGIAVPALYDIIETEQQIKSIETRFASYNDFVVKPARGSGGDGILVFKDKVYGR
                     YRQINGKLTTVQELSYHLSCLLSGAYSLGGSSDYAIIEKRVVVDPVFAEVSYEGIPDI
                     RIITLLGYPAMAMVRLPTRLSGGKANLHQGAIGVGVDLATGKTLGGVFQNDTIDYHPD
                     TLNPIVGIEVPYWNQILEIASSCYELTGLGYLGVDIVLDKEHGPLMLELNARPGLNIQ
                     IANREGGLKRYRTIEARFKESGQESTLDKVSFCRKEFAR"
     gene            complement(20358..21881)
                     /locus_tag="JBH85_01850"
     CDS             complement(20358..21881)
                     /locus_tag="JBH85_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944928.1"
                     /translation="MKNNKRHVYGLILTLLLLGSGIFLYRHIVLDVPLTDTETINSWM
                     VESNLRFTADRNTPIKASFNIPYLPPNFAILDEYFVSRNYGVTTNLNGSNRETVWSIR
                     RGNGPQSLYYRAIFRQTDSDESSLPKPSVTKSQPLNDSQKSAVETITNQVRSTSADIQ
                     TFAQSTIKELNKRDGNAKLLVGNEFNDDNIINATILILNQSKIPAITVQGIYLNQQKK
                     ADLKSLLAVFNGKNWIYINPKTGSAGLPKEFLIWQYGNGPLFNVVGGNRAQFSLTVSP
                     TPINALSVAKSRGLEDSQLLRFSLLQLPVNVQGIYKILLTVPIGAFIILILRNFIGIK
                     TFGTFMPVLIALAFRETHVAWGITLFVIIISFGLLARFYLDQLRLLLVPRLAAILTVV
                     ILLMIFISVLCQNLSLDTGMSVALFPMVILTMTIERMCITWDERGASEAIKSGIGSLA
                     AAVISYGAMSYEPLQYLIFAFPELLLVLLSLILWFGQYRGYRLVELKRFKSLASAMK"
     gene            complement(21871..22398)
                     /locus_tag="JBH85_01855"
     CDS             complement(21871..22398)
                     /locus_tag="JBH85_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944929.1"
                     /translation="MRSKFVLFMLMSLLTGSLMANSEAQIYGYVEKATLIDQNLTLSA
                     KLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETN
                     PGLLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPA
                     LTFTTKSKSPVNNEK"
     gene            22627..24573
                     /locus_tag="JBH85_01860"
     CDS             22627..24573
                     /locus_tag="JBH85_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944930.1"
                     /translation="MIAPYLYMPHASDENQASKPTDLVFILAIAGRIDAQSRILAQKL
                     DKSRSIYYAYAVMDSLSSSYSMFKYFFDLFASPNDNDAMHEFLNSPAGLITIAVESVF
                     LVTFSVLACQFENEKEDYYKKFIANAWPYFRDVMKGLKNAYKGWRSAVVAFSLIGGVD
                     AKFLILPMGVILGVFAAANRFWIRSMLEDRKIMMSENIALLMEIKKLISLSHEESFSY
                     FKRIRYQTMQTRNFAFWAVAAGGLLDGLYLYVGVLSLAVLSPQLLMAMALICAFYTVA
                     CVITRIYEEYDFQLRLLVTQTKCQLALITKELETNYAKLLLLQDKMDLDKVDQEELKR
                     LKRLVHNLITRFDDSRKLLSQQSNRTYLSSALLGMKNGLYAYGALASVLFLVGSILVM
                     AGVSFPPALLTACIILGLVLVLSFTIHSLVSNYWHQKKQETQKERPYERLIEWKNSLN
                     DEFNKTELLAPEEFHKLLNDGLSLDPSPQFFFQEWFEVLRSLFSGFGKGQKFIDFAGN
                     SLQELGEDGHYRDTPVMYVLSVFSALLFGVTLALRALAKGLGRTPLAQQAKLTEDSKE
                     ASVSPEITKEVMQKTEEQRESIQSEKTRTDSPGHTDSLSLFGIFETKTKRNQPDSPSI
                     PHSKSESALNQLIPSQNSTILGLA"
     gene            complement(24539..25129)
                     /locus_tag="JBH85_01865"
     CDS             complement(24539..25129)
                     /locus_tag="JBH85_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4254 domain-containing protein"
                     /protein_id="HAU0944931.1"
                     /translation="MQESFDPSTITTLHKTSIIRWKANGIEYQHKQFLQLVEENHAFN
                     FQLWHAEDKARRDDMGFEFVYQAKREIDAYNQQRNNRMEAMDEWLYKALEPENHNHCP
                     VNSESPGMIIDRLSILSLKSYHMDLQTKRQDVSEEHRIACTQKLEIIQQQLNQLALCL
                     DELLNEVRAKTRTFRVYHQFKMYNDPKLNPELYCSD"
     gene            complement(25356..26132)
                     /locus_tag="JBH85_01870"
     CDS             complement(25356..26132)
                     /locus_tag="JBH85_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HAU0944932.1"
                     /translation="MLLLNFKYILNGLKNMKRFMFILLMFLNFYTFGKPLIIGVPEFA
                     PPFVSRSGGGGETYFGFNIDLMNSICKIIEMECQYKGMNIQQLYTNLNQGKLDIMLAP
                     TPIVSTVGTNYIFSLPYLPSNAQVITLKANNDINSLADLKGKKVGTLKYTLYGSLLAE
                     HFQDYFDLVQFSKLSDMALALSNQKIEAIVLNTNAAKYAMSNSATELKFVGDKMAIGD
                     GYGILALKNNAPLIMKINKALLQIEKDGTYLEIYNTYFGD"
     gene            complement(26178..26624)
                     /locus_tag="JBH85_01875"
     CDS             complement(26178..26624)
                     /locus_tag="JBH85_01875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HAU0944933.1"
                     /translation="MTIWIDADACPKMIKDILFRAAIRTNTNLILVANSYLTYPNSPF
                     IRSVLVEKGYDRADHYITSHMKAKDLVITADIPLAAEVIVKQGLAMSPRGELFTANNI
                     KQRLTLRDINEQLRSAGERTGGPSALSAKEKTNFANALDRWLAKSK"
     gene            26735..30709
                     /gene="lem1"
                     /locus_tag="JBH85_01880"
     CDS             26735..30709
                     /gene="lem1"
                     /locus_tag="JBH85_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem1"
                     /protein_id="HAU0944934.1"
                     /translation="MKQLISIIKGQIQQLPIPDLKHLLLSHLKEDAHDLTELFCQQIP
                     AQKNQFSLNHSVPFGLPASLSVLTIFLTYAPNLLHRELSEQLLTMLDSIKETETSVDN
                     QLAERCTRQLNYYSDAKPVLIALKERGAKDLIQILEQADERSLSAFSHLAKDTDLNVL
                     IETFLVKNNKDLDLVNRNHLVQFLRQPDLAGWLTRFLDSLTDESINALSIRLLLSLVS
                     SEKAIEKLKEARVCLAQYPFSIDLHAMRAVFDFYQYELKRDLFSPESHLVMQLLHDLL
                     KNTKLDKQQEFFQGLSQETVLLIIEYCIAEYNKTTGEEKQNCKNLLTRLCSAFSDSSQ
                     DFLGEIRTKINQLDLYLFDTPQLYQLASDLITKSYNSGKEPLSSYPIALLLSMPQFVG
                     VCTPKVLKQLVERYSLYTLTLNQKDYKQDLCFKEYAPYFDEINEHMAQIERNLCIHPE
                     AQSFWLDKKYSLLQFRVEISKSALLHQMECLLEANKGGDELHNKGLEVLYHYYALSYP
                     NLRSDLFLKVVNHIYSRFFIKGNNETEARNGLFHWLKQSFPLIDKLPKELDRKKEIFL
                     YNSAGKKIGFLGESNAAMTFVNEEIVLLARTGSMDINEPLYDQEGLVLGYLTEESCLR
                     SESAIHKNAAAWVLAGLSKSDLESSSFGLESLLHNVLFENAIGVLYQCESICLDANKR
                     IWLNNKLLKEIQEAPGEIPASVLYPLLDHFEDETVFELLGVIRNKNNALELFHYILNR
                     DSRRSILLNGLYESDFQRFLEHQGADVCLADYLVNYYDKPWFSEVLLRFAYHGKKYKK
                     PDLLSSALTFITKEISQDKKQETICDAVLDRLINSEACAALVLKEFLGDRTHNSIQKV
                     NNPEIGKVSQFFDRRHIVPLIAQLNKTSYWEQNAQYKLALHILANQHGRLFSETDLNL
                     DSPQAWQSKELKELACFTSRHLSKKRPFDNKHDIGYRVLGELLFRCANAGITSLFYKH
                     KALNRAITRLSITEPFLVRMVDKLWMPKGIRELYGKSLFFKGSWFDDQVFLQKELKDH
                     HPLLDWSHFIKQTWSKRDKQKKSPIICSYLLSYTGKKSVLLHLLQDYFNSFQGMPDYI
                     RPVSQLLRFFPQRDVSAVIYDALEAEMIKKPQSLDRQILSDMAFYYGKQLARKDTSFP
                     QADINLLTYWGQNKHYSLVKRGCELLVRDCEDKGVKKRLISAAKEAEVEQDLSSSVQT
                     FYFGLIKFFKRLWHYGFNAENSSSKIIKFCDDRTPGPTRKKAGDLINAPVAESRTNSL
                     HLGFSERRKQLISLLATIKSSPAHFTRVVNYSDNTQTFFGEQSKQSIDYNTPAIPSNF
                     ESIM"
     gene            30924..31388
                     /locus_tag="JBH85_01885"
     CDS             30924..31388
                     /locus_tag="JBH85_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944935.1"
                     /translation="MRILLSFYLLLLSTGLFAESTFPDGCRAVPVQGQSVTLKAKKNK
                     LVFIHNVTNLDLWITHPVTDPGASAGWTSRLQAGKWSALLVDKPAFILNCIESRPGHE
                     QQIPCENAIAVCQWKGVKIPASDQGTFWVAEDLSLAALTAAVGGRGFVLPEK"
     gene            31794..33974
                     /gene="rnr"
                     /locus_tag="JBH85_01890"
     CDS             31794..33974
                     /gene="rnr"
                     /locus_tag="JBH85_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HAU0944936.1"
                     /translation="MSKKSKDPFYKREREKYAEPIPSREYIMEILDEYGRPMSRSKLF
                     DKLDLSSESQQESLGFRLKAMLRDGQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFF
                     IPDDGSEDMVLSAKEMRAVMHGDLVLAYQSGLDRRGRPEAKIHEVLEHANTTVVGRFF
                     TDHGVNFVIPDSKRLTQDISIPQEFIGEAKNGQIVLVELIAYPNKRSQAIGRVIHILG
                     EHMAPGMEIQVAIHAHGIPFEWPDDVLAEVGKIPQQISEEQLKGRTDLRNLPFVTIDG
                     EDAKDFDDAVYCYKKPKGGFQLYVAIADVSHYVAKDSALDQEAARRGNSVYFPGKVVP
                     MLPEALSNGVCSLNPHVDRLCMVAELSITQEGKISRSRFYRAVIHSHARLTYTSVGAW
                     LEQGKADEKHQALWPMLESLYDLYHILLDTRRLRGAMDFETTETRIEFDENKKIKCIV
                     PVIRNDAHKLIEECMLAANVATARFLEKAEIPTLYRVHAAPEEDKITALRQFLGELGL
                     SLGGGRKPGPKDFQRTMNMIGDRPEKHLIETVMLRSLKQAQYVESNEGHFGLAYSAYT
                     HFTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSHEDMNRLGKHSSMTERRADEATREV
                     ITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEIYVEGLVHVTSLKNDYYTFDSAK
                     HRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVEDEVCNE"
     gene            33940..34716
                     /gene="rlmB"
                     /locus_tag="JBH85_01895"
     CDS             33940..34716
                     /gene="rlmB"
                     /locus_tag="JBH85_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HAU0944937.1"
                     /translation="MSLSRMKFVMNEQYVYGLHAVSALLANPHRMIKKLFVNQDRIDK
                     RLHEFLVKAENAHVPIEKLSAQKMNQQFSEFTHQGVVALASALAEYGESDLVTLLEKS
                     KKPVLILILDGITDPHNLGACLRSADATGVDFVVIPKDKSASITPVVSKVACGAAESI
                     PLVRVTNLARAMDILKQQGVWIFGAAGEAENLLYAMDCSGNIALVMGAEGTGLRRLTR
                     EHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE"
     gene            34709..35359
                     /gene="rpiA"
                     /locus_tag="JBH85_01900"
     CDS             34709..35359
                     /gene="rpiA"
                     /locus_tag="JBH85_01900"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HAU0944938.1"
                     /translation="MSELKIKAAKAAIAYIEDDMVIGVGTGSTVNFFIKELAAIKHKI
                     EACVASSKATEALLRAEGIPVIDLNSVQDLPIYVDGADEVNERGEMIKGGGGALTREK
                     IVANVATQFICIVDESKVVKRLGEFPVAVEVIPMARSFVARQIVKLGGDPEYREGFVT
                     DNGNIILDVFNLSFSTPMALEDSLNVIPGVVENGVFAKRLADKVLVASASGVNNLK"
     gene            35423..36802
                     /locus_tag="JBH85_01905"
     CDS             35423..36802
                     /locus_tag="JBH85_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5' nucleotidase"
                     /protein_id="HAU0944939.1"
                     /translation="MDTHKVFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLV
                     KERLAESFHYPEEIKKFKFNFDDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISF
                     SDQKKIYRSIYVDLGDPNYMAIDTSFSIAFCILYGQLVDLKDTNPDKMPSYQAIAQDV
                     QYCVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKL
                     LLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVP
                     GVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQ
                     IRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQIS
                     RLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANR
                     RLLAHDIDI"
BASE COUNT        10966 a         6478 c         7914 g        11529 t
ORIGIN      
        1 tgaatcttca tggatggcaa atgaaaagaa ctatttttta acaaaatatg attgcaatgt
       61 aattgtaaaa gatgagtctc ttgttagagg cgtgttgcaa aaacaagagg tatttaatca
      121 tcctatcttt gattatttaa tgcatgatgc cagcattgag gacctcaaaa aattcgccta
      181 tagcgaatca attatgaatt tggaattctt tgactattta gcattagcag tgataggggt
      241 ttctgctcaa gcaaaggtag aaattatggc aaacctttgg gatgaggcag gccaaggatg
      301 tgctgagaaa tttcatactg tattgtttca aaatttttta aacgatttgg gtataaccta
      361 tgatcgaaaa caaattttag aagacctgtc ctgggaagga gtggctggaa ttaatttatt
      421 caattacttt tctatctatc cttttaataa aactaagtat tttggcatgc ttgcggcaac
      481 agagatgctt gaccctcccc attataacaa attaataaaa ggcattatga gaatatttag
      541 ttcgcataat atcgatcact cctattacac cgaacacgaa ctagtggacg ctcagcatgc
      601 gagtgggtgg cttaaccatg tcgtcatacc agagctagca cgtaagcctt ataaaacgca
      661 ggatttttgg ttgggttttt acatgcgact ggattcgacc aaaaaatatt atgaccaatt
      721 attaaatagc ttgatcatga aaaaagctgc gtgaggtgga tgatgtctta catgcttgtc
      781 tcaaatgaaa aggtaattgc agaagaatgg aaaaaatatg caggatacac tgtgcggcct
      841 ttacctagta cctgtgccta ttataaagat ttaattcaat ctaactctaa taaggactca
      901 tttttaattt atggtggaac accagaaatc agatcactct ttcaggaatc aaatttaaag
      961 gtcaccttaa cggatcaatc tgagttaatc attcgtgcca tgggctatct aacaatgggt
     1021 gcagcatcta ttgctgccaa tgaggaactt gttgtaacca attggcttaa tttagaggga
     1081 attgctaatg attcatgtga cttcctcatt ggtgatgatg cgattaatat ggttgagtgg
     1141 actcaatttg acttgttctt atctaatgcc aatcgtgttc ttaaaagtaa tggcctattc
     1201 atttgccatt tattagtgaa accacaggag tgctttataa cgaatacaat agatgatgtt
     1261 aggcgtgagt ataaagaggg agtgattagg actaagtatg acttagctag tagattaaac
     1321 tttatctgct atgacactaa ttcctatgct atgggttggc aaaatactat tgaacagcta
     1381 ggaatcaatc agttggatca gttcaagcca agttttgatt ttgtaggtac atttggacga
     1441 tgtaatagca agttttattg ccctccccaa gatgcatttg agcgtttact caataactat
     1501 ttccatattg aggaagtatt ttatccacat gagtatgagt attgtcagtt cgaaccagtt
     1561 tatgtattac gtaaaaaata gcataaggaa cttgcacatg agcattcatt taattaacta
     1621 cacaacacaa ccagaattca ttaaattaat cgtacaagaa tataaaaatt ttgacttgac
     1681 caaaaaaaca attcttttta tagagcctta tggcgctgtt ctttcattgc taaggagagg
     1741 acttgaaaaa aagtataata ttattgtttt aacagccaac agtgatttta gagtggtgcc
     1801 tgaggagttt ttaaatcagg ctgcactgaa tatcaatata gatactgcaa ataataacag
     1861 tgtattggag cttgctggta cattacagca gcatatgtct atagatgcag tcattccagg
     1921 ttttgaatat tttgttccta ttgcttcaag agtcagtgcc ttattgaaag tacctgggat
     1981 tgattgtaaa cacgtattaa atcttagaag aaaagacctc atgcgtgctg ctttaaataa
     2041 agcaggtttg aatagtccac ggtattactt agtaacctct ttggatgata ttaatgaagc
     2101 agtagattat attggatttc cggctatctg caagcctatt gatgctgcag gaagcgttca
     2161 cgttaaaaag gttaaaaata aaaaagaatt gctcgaggct gctaaccgga tattaaatgg
     2221 caatgatgtt ctgtgggggc ataaattatc tagttcttta ctattagaag agtatatcga
     2281 tggtaaagaa tacagtttgg aaggaacagt gcaagatggt gttattgctc attttagtac
     2341 tactgaaaaa tttgtttcag atcaatctga gttcatcgaa atagggcata ttgttaatgc
     2401 gcccattgaa cagcagttgc atacaaagat tcaaaactat attgatcagg ttataaaaat
     2461 ccttggcgct gacaattgtc catttcatgc cgaagtgcga ttgcgacgtg atggggaacc
     2521 agtgcttatg gaaattgcag cccgcttagc aggtgataag attgccgatt tgctttgttt
     2581 atctcgtggt attaattatt ttgattatgt ttatgcggcc tatctgggta taaagatgcc
     2641 cttagtagaa atgaaaaata attatgcagg tattcgtttt ttttatcgtc cgcatacaga
     2701 tatgtttaca atagtaacgg gtatggatgc tgcgaagttg cagactatag aagatattgc
     2761 catttactat aatgctcatg tagcaattcc tgagtttcct aaacccttac gtcgcttggg
     2821 gcatgtcatc gctaaaagtg aggattataa taagctctct aaaatgcttc atgatattga
     2881 ttcagacatt cattttaact gataaaaata aaggagaatc gaatgtctca atctaatgtt
     2941 attattgttc atggtgccta tggtcatcca tttgaaaatt ggttcaattg gatgaagact
     3001 gaattagaga gtttaggtat tgaatgtttt gttccacaac tgcctacgcc agatggccag
     3061 gaattaaaga actggcttca cgtatttaat tccacagtat caccaatgat tactcatgat
     3121 acgattttaa tcggccatag cttgggatcg gcatttttat tgaggtggct tgagcaagct
     3181 aatcagtctg tatttagcac tattttagca ggttcgttta taggaactgt tggcatacag
     3241 aaattcgata aaattaatga gagttttttt gaaaatgggt ttgattggca ttcaataatc
     3301 aataaatcca aacagttttt ttgctaccat gggagcaacg atccttacat atcaagaagt
     3361 aactttaatt ttattgcaaa caatctacag gctagaaaaa ttatcatctc tcaaggcggg
     3421 catctcaacg aagcagcggg tttttcgtca tttccccagt tacttattca attaaaatca
     3481 ttattaggta ttaattatgg caaatttatt tagttttttg tttcttggaa cactgggctg
     3541 gggcatgtca ctctatttaa tgaaaatatt attggtgtct ttaacgccaa cggaaattgt
     3601 tttgtatcga atggcaattg gggcagcttc tctttttatc ttagctaaac tatttaaatt
     3661 aaaaacggat aatattcgtg ggttaattct ggacggaata atagttggta catttaacat
     3721 gacgctgcct ttttatctga caacctatgc agtaaaaact gtatccagtt cattagcatc
     3781 cgttattaat gggcttacac cgctgtgcac cttaatattg ggtatggtgt ttttttcttc
     3841 gaaacaaaaa ttaggtgtat tgaatctatt gagtatcgtg cttggattta ttggaataat
     3901 tattattaat tcagatgtga gtatttatca aggttcagct gttgaattta tagctcttct
     3961 agcaacaacc atttcatacg gagttactgc taattatttc aaatatcatg ctcgtactaa
     4021 agagccaata cttgtatcag cggtttcggc attcgtttct gcaattacaa tgcttatttt
     4081 taaatgtgca acggaatcct caattaactc ctggggaata ccccaaggca tgaatcagat
     4141 aatcgctttg ttatggttag gaattattgg atcaggattt tgtttatatc tctactgttc
     4201 gttaatccaa aatgcaggtg cagtttttgc gtcaatgatt acctacctta tgacaataac
     4261 aggggttatc atggggatga tatttttgca cgaaacaatt tctcatcagg tcatgattgg
     4321 ttgtatattc atttttttct ccttgatatt agtaaaccac gcgcctttgc ttgaaaagat
     4381 attggtttct atatcaaggc aaatttcatt aaaaagtgct cgtagatatg aactaaatca
     4441 gtagatcaac tcgtgatata tttcgttatt ttgtatttta aaatcggtac caaaactggt
     4501 accaagcttc aggaagggaa aacttggaat tcgccaaaac ccagactggg attggctccc
     4561 cggacaagac tcgaacttgt gacctaatga ttaacagtca tccgctctac cgactgagct
     4621 accggggaat tgaggcggaa tcttaaaacg attccgcgag agaatcaaga ggtttttaat
     4681 atatttttta actgcagaaa cgttgtaatc ggttcaaggc atctttcagg gtgtcaatac
     4741 cggtggcgaa ggatattctg atgcagcctt ctgtgccgaa ggcggagcct ggaaccagtg
     4801 ctacacctac ttcattcagc aatttttcgg aaaattcgat gtcattggcg taacctcgtt
     4861 tttcgataat cgcctgcaca ctgggaaaaa tgtagaaagt tccgtcggcg gggatgacct
     4921 ctatgccatc gatgctttgc aatctatcgg ccacgtagtc gtgcctttgg tggaaggcgt
     4981 tcaccatttc ttcaatgctt tcattgctgc cattcaaagc ggctacggca gctctttggg
     5041 ctatggagca tggattggat gtggattggg attgaatggt tttcatcgca ttgattaatg
     5101 gtgcagggcc tgccgcatag cctatccgcc agcctgtcat ggcataagct ttggacacgc
     5161 catttaatac gatcgttctg tcatataatt cagggcaggc attgaggatg ttcgtaaagg
     5221 gttggctcca gataatatgt tcatacatat catccgtggc aatcagtatc tgtggatgtt
     5281 ttttcaaaac gtcgcctaat tcctttaact cgttctgggt gtaggctatt ccagaggggt
     5341 tggaagggct gttcaggaaa atcattcgtg tttttggagt gatggcttgt tccagttgtt
     5401 gtgcattgat tttataacgc tgcgcgggag tagtttcaat gatgacagga acgccatcag
     5461 ccagcaaaac catgtcagga taggataccc aataaggagc gggaatgatg acttcatcgc
     5521 caggattaag gtaagcttgg cagaggttat agcagctttg tttaccccct acggagacca
     5581 atatctgatt gagttgataa tccagttcat tgtctctttt gaatttgttt ttaaccgctt
     5641 cctttagttc gactatccca tcaacggcgg tgtatttggt atcacctgct tcaatagcag
     5701 agatggcggc tagctttata tgctgcggcg tgtcaaaatc aggttcacca gttccaaggc
     5761 caatgatatc aagcccctgg gctttcatct gagctgcttt tgcagctacg gcaagggtag
     5821 gtgaaggttt tactttttgt acacgctttg ccaatgcgat atccatctgt tgctcctgtg
     5881 aattataggg gtactagcat ataatataaa atatgaaaga cttatttaaa atttactcaa
     5941 attaccaacc tgccggcgat caacctacag ccatagcctc tttgattgat ggtcttgaat
     6001 caggtttagc caaacaaaca ttattaggcg ttaccggttc tggtaaaaca tttactatag
     6061 ctcatgttat tcaagccatg aaaagaccca ctttgatcat ggcaccgaac aaaacgcttg
     6121 cggctcaact ttatggagag tttaaagcct tctttcctga taatgccgta gaatatttcg
     6181 tttcctacta cgattactat cagcccgaag cgtatgtgcc tgcttcagat acttttatag
     6241 aaaaggatgc ctccattaat gaacatatag agcagatgcg cttgtcggca accaaagcgt
     6301 tgattgaacg caaagatgcc attattgtag cgacggtttc tgccatttat ggattgggcg
     6361 acccggattc ctatctgcgt atgttattac atctctcccg tggagaacaa tccgatcagc
     6421 gtaaaatttt aaagcgtctt gcagaaatgc agtacacacg aaccaatctc agccttgagc
     6481 gcggtcaatt ccgggtacat ggtgatgtca ttgatatttt cccggctgat tccgagaaag
     6541 aagcgataag aattgagctt tttgacgatg aggttgataa tattgcccgc tttgatcctt
     6601 taacgggaga aattttacag cggttgcccc gtgtcactat ttttcctaaa actcattatg
     6661 tcactcccag agaacgtatt ttagaaacag tagaaaaagt aaaagtagaa ttacaggaaa
     6721 ggctggctga gttgaatgct caaaataagt tggtagaagc tcagcgtttg gagcaaagaa
     6781 cttgttttga tattgaaatg atgttggagt tgggttattg ctctggcatt gaaaattact
     6841 cgcgttattt atccaaccgc gaagcagggg aagcaccgcc tactcttttt gattatctcc
     6901 cgcccgaagc cttgctaatt atcgacgaat cgcatgttac tgttcctcaa ataggtggga
     6961 tgtatcgcgg agacagggcg cgcaaggaaa ccttggttaa ttatggattt cgcctgcctt
     7021 ctgccttgga taataggcct ttgcgttttg aagaatttga agagcgttcg ccgcagacta
     7081 tttatatttc agcaactcca gggccttatg aacaggaaca ttcggataat gtggctgaac
     7141 aagtggtaag accgactgga ttgattgatc ctgaggtgga aatcaggccg gtaaaaactc
     7201 aggtggatga tcttatgtct gaaatcagac aggtgatcgc tcagggcagc cgtattcttg
     7261 tcacgacatt aaccaaacgc atggcagagg atttgacaga gtatctgagt gagcacggga
     7321 tcaaggtgcg ctatttgcat tccgacgtcg atacggttga gcgcatggaa attattcgtg
     7381 atttgcgttt gggtgagttt gatgttctgg tagggattaa tttattgcgc gaaggtcttg
     7441 atatgcccga ggttgctctt gttgcgattt tggatgctga caaggaaggt tttttacgat
     7501 cggagcgttc tttaattcaa acgattggcc gtgcagcgcg taatgtgaag gggcgagcta
     7561 ttttgtatgc cgataccatt actggttcga tgcaaagagc attgacggaa acagagagac
     7621 gacgtgaaaa gcaaaaagca ttcaatttgg aacacggcat tactcccaag ggtattaata
     7681 agtctgttga ggatattttg gaaggtgcct atatcggtaa acgaaaaaca gtggttgctg
     7741 aaaaatctcc ccaatatact cattggtctc ctcaggaact ggtaaaacag attaatgcgc
     7801 tcgaaaaaca aatgtattct catgctcaaa acatggaatt tgaattggca gctaaaattc
     7861 gcgatgaata cctgctatta aaagagcagt tgatgaagat ataacccgat gggtaccgga
     7921 ttttgaaccc ttaggttcaa gtgggcagcg aatgcatcgg ttcaggcttc ccactctatt
     7981 ggtgggcttg ctcaacgccg ataacaggat gcttccctgg ctgtgagtgt tggttctaaa
     8041 atcactcgcc atcgggttaa ttagattata acactaacct ggtttctacg cctagaaaaa
     8101 ctccatatga tatagcattt gttatttgtt ctttagacta tactaatcat taagtagtcc
     8161 atttattcag ttttttgtag agcattgaag tggttgtaga agggatgagg aattaaaaac
     8221 cagcctgttc acaggcataa gggaattact gttaatccat gaatattaaa tctaatttgg
     8281 catatagctc tgttatcctg aaaggtcatg ttaaccggta tgccttttta ggattgctta
     8341 tttctgttgg cagtatcttg attgcaagtt gtattgtttc ctatcaattg actgggtctg
     8401 taagcttagg agggtttatt caggcacaaa gatctaaccc ggcaatttgg attctggatt
     8461 taacaccttt tatgtttgtt tattgggggc aagcgttttg ttatggattg gttaacaaag
     8521 cggagagttt actggttgat aaaaccaaag aacttttgaa tattagtggg aatctggaat
     8581 taaaactcaa atatgatagc ttgaccaatt tgcctaacaa ccgcttgtta aatgaaaaaa
     8641 tacggctcgc tattgaacaa ttgggatcac aaggtgagtt agcagttatt gtgataaaaa
     8701 ttaatgatct taattataat ttcagctcat ttaataccaa taatatcgta aagcaatttg
     8761 ctgaaaaatt aaaatcggtt ctgattgatc cctacatgct aaaagcgtct cttggaatta
     8821 atatggttgc aagattgcaa agtgatgaat ttgccatatt gatgccaaga cttaaaaagg
     8881 atttggaaat taatgagctg ttaattcatc ttcttacctt gctaaatagt aatctcatgg
     8941 tggatggaat taatatcaat ctggccacta ccgttggtgc tgctatctat cctatccatg
     9001 gagaagaaga cgatgtttta ctaaatcatg ccattattgc agtttaccag gcacgaaagg
     9061 aaaacaaatc ctatgcaatt tacagccctg aaatggaaga agaccttatt aataatcgga
     9121 ttgtgatgaa tgaactgcaa cgctccattg aaaacaaaga cttgaaaata tattaccaac
     9181 cgatagttga attagctaat ggccaaattg taggtgccga gtcatcagct cgttttgaac
     9241 atcctgaatt aggtttatta agcgcggaaa aattcatgcc tttaatcgag ggaaccagtt
     9301 taattcataa tttgacaact cttatgctta aggaagtcat aaagcaatta gccgcttggc
     9361 atgatgctgg acataaaatt tttgtctcgg cgaacctgtc agtgaatcgt gggctgcctg
     9421 atttgataga gaaattatta aatgattatg agattgcccc acaattcctg aaacttgaat
     9481 ttaccgaaag gacttgttta gctgagcaga tggttaccag tgaagttttt gaacgattat
     9541 caaccatggg catcaaatta tgcatagatg atttttgcag cgagaactct tcctttattt
     9601 atttgactga tttccctatt gaaaacatta aagttgagaa atctttcgta ctgaaaatag
     9661 ccaaagacgc aaaaaaagcc aaaattgtag aggctatagt aaaactggcc caaacattag
     9721 ggtgggaacc cctggcagat ggcatcgctg atcaaaatgc attggaaaaa ttaagagact
     9781 taggctgctt gtatggccag ggattatatt tttctcgagc ggtcaatgtg gctgaattta
     9841 catcattgct aaagaaatga atctggcttt aaatcactta ccattcgttt tcccgctttg
     9901 attcacatgg aatacgaatc acaacgctga cacgctatgg ccacactgat attaaaactt
     9961 gtctggattg gcatgctccc agtggattct ataatcttca ggaatatcgc cttgtaaaaa
    10021 ttggcctggc ttaacgtaag tatagatttg atcaaaagat ttgacttcat ccaccccgat
    10081 tcgtctcata atatgggatg gttttaaatc actgggattg tttaatccca aggcgccaac
    10141 catttccaaa aagcttttta tcgtattatt atggaaatta gcaacaagaa attttttttg
    10201 atcaacaaca agaccatact gaagacgttt cttttgagtg gcaactcctg tcgggcaggt
    10261 attggcattg cattgttttg attgtatgca ccctattgcc atcatcatgg ctcttgctga
    10321 attgcagata tcggccccaa gagcaatatt agtgagcaaa tcaaacccgt tggttacttt
    10381 tccactgcaa attacgcgaa ttttatcacg tacaccggtg ccaataaggg cattatgaac
    10441 aaaaaccaga ccggcttcca aaggagttcc tataaaattg gtgtattcaa ccggtgctgc
    10501 tcctgtccct ccttcggcac catctattgt aataaaatca ggtaaaatat ttgttttcag
    10561 catggctttg caaatagcca taaattcatg tcggcgccca aggcagagtt taaagcctat
    10621 gggttttcca cctgaaagat cgcgtaatcg ttttacaaaa tgaagtaaac caacgggatt
    10681 atcaaaagcg gtatgggcaa ttggcgataa aacatctttg cccatgggca cttttcttac
    10741 ttttgcgatt tcttcagtta atttggctgc aggtaaaatt ccaccatgag atggcttcgc
    10801 gccttgtgat aatttaattt ctatcatttt gacttcatca cgggatgctt ctttgataaa
    10861 ttcattttcg tcaaagtcgc ctttgtcatc acggcatcca aaataagctg tgccaatttg
    10921 aaaaacaatg tcaccgcctt gcaaatggta aggacttaac cccccttccc ctgtattgtg
    10981 gtaaaagcct ccaagttttg ctcccttgtt taatgccatt atggcattag ccgataaaga
    11041 gccaaagctc atggctgata cgttcaatcg ggaggcattg taaggttttt tacaatcagg
    11101 tccacccaca tcgattcttg gttccacttc gctagagtgt ttcggcgata gagaatggag
    11161 tgcccaagta taaccgacgc ttagaatgtc tcgctccgtt ccgaaaggaa tggtgtctct
    11221 gacatttttt gcgcgttgat aaatcatgga gcgggtttcc ctgttaaaag gaagctcgct
    11281 ttcatccgta gcgatgaaat attgttgaat ctcagggcga agaaattcca aaaaatatct
    11341 aacgtgacct agaactggaa aattgcgtaa aatggtgtgt tttgtttgca atacatcata
    11401 aatccacagg attacaatag gtatcaaaaa agcaaaaaac cagacaatat cctgcagcat
    11461 ggcaaacagg gcaaagagac ataaaaggat aactccaaat ccgatatacc attgacgtcg
    11521 catagctaat tccttttaat tgtttgctat taatatcaat agtataggat ggtttgccga
    11581 ggaatactta atttatctgc ttatggattg ctatccgttt cagagccaac tactgcttta
    11641 ttaattttat tttccaaaga agatataaat tgggtcacct gcaatcgctg ttgctcctgt
    11701 tcgtttttac atacaattaa ttcatggcca atgtccagag cagcaagtaa aaggatgtga
    11761 aaattatcca ggtgtttaaa tttatttttg ttattttgca ttttttcatt aagtttttct
    11821 gctgcgagta ttaaactcac ttcttcgcca tcagggcatt tgatttcata gattttattt
    11881 aataatttta ttttacagag tttaatattg gtcattatta cgcctttgta tttgcacggt
    11941 attatgcaaa tagtagcaat tttgccttaa tgcagcaaat tatgaaaatc ataggtgctg
    12001 agaaagtgca gcaggtgaac actgattcta aatggagtat cattagctat ctttttaaat
    12061 agggttaaat atgtctttag ataatgattc gctgcattta cctaagtacg atgattttgt
    12121 gcaatccatt tctgttttag cattaactat gtccggaagc gaattacacg gaatcatgtg
    12181 cggttatctg tgtgcagggg ctgatagtca aggcgaggct tacatacgcg ctttgctaaa
    12241 taataaaaaa gatgagcaaa gtcgtaatgc gttattatcc atgttttctg tcttttcaat
    12301 tagccagcaa caaatgaata attttgattt tgaatttgaa atgttattgc ctgatgacga
    12361 cgaatcttta gtcactcgtg ctcaggcttt tagtgagtgg tgtgaaggct ttacgcaagg
    12421 gttaactatt gcaggagttg ggatggagca gttttatgag gaggagtctc aggatgctct
    12481 tcagcacctt atggaatttg cagagctgga ttgtgagtct ttggaggtag gcgaggaaga
    12541 tgagagagcg ttgatggagg tcagtgaata cactcgtatg gcagtacttc gattgcacag
    12601 tgatttggtt ttgcacgaaa gagaacttgg agattctgga acaacccatt gatagcaagt
    12661 tgataaagta tcgaggttgt ttgtatttat tggtttcttt gattttttaa ggattgctca
    12721 tttgttctat ttattaaagt gaaaagggaa attgatatga taagccaaca agaatataag
    12781 gcgagaagaa aaaaattagc tgcgcaattg cctgatgaca gtgttgctgt aatacctgca
    12841 gcacatgaag tgctgcgcag tggagatact cattatcgat ttcgacagga cagtgatttt
    12901 tattatttaa caggatttaa tgagcctgat gctttgctgg tcattattgc gggaaaggat
    12961 agccaaagta ttttgtttaa tcgcccaaga aatcctgcag aagaacaatg gacaggtaaa
    13021 cgattaggtc aggacggcgc tttgcaagag cttggagtgc aggcggcata cccattaagc
    13081 agtattacag aagagcttcc taaactattc agcgggaaat ctgccatata ttatgacctc
    13141 ggccgtaatt tatcattgga aaaaaaaatc aggcatgttt tatcttcact aaaagcccag
    13201 gtgagaagag gcattaaggc gcctgagtcc ttatgcgatc tcgaacctat tctaagcgaa
    13261 atgcgtttgc ttaaaagcga tgcggaatta gagttaatga gacaggcagc ccgtatttca
    13321 gtggctgctc ataaacgagc gatgcaagtt tgtcagaaaa tggaatatga gtaccaactg
    13381 gaggcagaat taatctatga gtttagccgt catggctgtc gtagtgtagc ttatgaccct
    13441 atcgtgggtg gtggcgccaa tgcctgcatt cttcattata cagaaaataa caaacctttg
    13501 cgccgtggcg atttggtgct cattgatgca gggggtgaat atggtagtta tgccgcagac
    13561 attaccagaa ctttcccggt aagtggtact tttagccctg agcagaaaat catttatgaa
    13621 ttggtattga aagcacaaaa ggctggcata gcagcgattg aaccgggtct tccctggaat
    13681 catattcagc agactattat cagaattctt actgagggtc tctgtgatat aggaatttta
    13741 aagggcgatt tggaggagct cattaaaaat gaagcctata aaccatttta tatgcataat
    13801 tcaggacatt ggttaggatt ggatgtgcat gatgtcgggc gatataaaat caataatgaa
    13861 tggcgtcctt tagaggctgg aatggtatta acagtagaac cagggttgta tatcagcgca
    13921 gggatggaag gcgttgataa acgatggtgg gatatcggtg tgcgtataga agatgatatt
    13981 ctggtaacca gggcaggata tgaggtattg accggggact tgcctgttaa tgtagatgat
    14041 attgaggctt tgatgcgtgg cgaataaaga gactgatata ctgattattg gcggtggttt
    14101 gactggtgca agcttatcct tggctctgca gggattaggt ttctctgtca cgttagtaga
    14161 atccaggcca tacagcgata aggtaaatcc tgattttgat gctcgctcat tggcgttgtc
    14221 gcctgcaagt caacgtatat tggcaatgct gggagtttgg gaaattctca aagaatatac
    14281 aacaccaatt catatgattc atgtttctga tcagcatcgc tttggggctt ctcgtttaca
    14341 tggcgaaaaa aacagtcctt tgggctatgt ggtagaaatg caatacatca acagggcttt
    14401 gagtattcta atcaataaag aacacttgtt aactccagcg gctttaaaat ccatcgattt
    14461 taacaattct actgccactg tcgcccatgg cgacgatatg atttctatcc gagctcaatt
    14521 aattgtcgca gccgatggga cggagtcgat gacacgctac ctttgtaatc tgccagtcaa
    14581 aataaaagat tatgctcaag acgctattgt cgccaatgta ggtctgataa aaccgcatgg
    14641 caatcgtgct tttgaacggt ttacgcctaa tggtcctctt gcattattgc ctatgatgaa
    14701 tgacaaaatg tcattggtat gggcatcaaa gcctgaagaa gcaaaacgct tagtgatgtt
    14761 gaatgatgat gattttttgc gagaactgca aactgctttt gggtataggt tagggcgatt
    14821 tggtaaagta ggaaagcgat actcctatcc cttgaaacaa gttttaatgc cccagcaaac
    14881 caaatggcct gttgtttttg ttggtaatgc cgctcacact ttgcatccag ttgcgggtca
    14941 ggggtttaac ttgggtttaa gggatattgc ggctttggca caatgcatca gccaaaaggg
    15001 attaaatcca cagatgttgg agcattattt gcaattacga gcacatgatc agcaaatgat
    15061 tacctggcta acagacggtt taatacatct atttacgagt cgtttacccg gtatgggagt
    15121 agcgcgtaac cttggattgc tggcacttga taatataccg gcattaaaaa atttattagc
    15181 gcgatatgcg cgggggtttg gcggaattac tcctgatttg gtttgtgaaa ttgcattaag
    15241 cgcaggagaa tttcaatgag ccaacatttt gatgtacttg tcattggggg cgggattgtt
    15301 ggcttgacag cagctttagc tatggcccaa cgccattata ctgttgctgt tatcgatgca
    15361 gggacattga tggtcaatac agacaagagt gatttgcgtg tttatgccat caataaggca
    15421 tcaaaaatgt tattaagtga attagaagtg tggcagcacc tcaatgatgc ccgggtcgct
    15481 ccttataata aaatgcatgt atgggatggt gtgagtggcg catatattga ttttgattct
    15541 cgcagtattg ctgagccaaa tttaggggca attattgaag aatcaatctt aaagcaagct
    15601 ttgttgcgtc gaatctcatc agaatccaaa ataagtttat ttcctcaaag tgtaatagat
    15661 gaggtgtgcc atttagagcg gagtatcaag atctccggcc aaaatactgc ctgggaaggg
    15721 cagttattga tgatcgctga cggagctaac tcccctatgc gtcataagct taaggtggat
    15781 gtaaccagct ggtcttatga gcagcaagcg ttggtcgcaa cggtaagtag tgagaaatca
    15841 catcagaata ctgcttttca agtgtttcat cctgatggcc ctttggcttt tttgccatta
    15901 tctaatctca atcaatgttc tatcgtttgg tcaactcatg ccgataatgc gatgcgattg
    15961 aaattacttg atgataatga atttagccgg gaattgacta aggcatttgg aggtcagcta
    16021 gggcaaataa aggtagtaag cagtcgccat caatttcctt tacagatgag acatgtcaag
    16081 caatatgcag ggcatcgctg gttattgctt ggtgatgcag cccacactat tcatccatta
    16141 gccggtcttg ggttaaatgt tggcctggct gatgtgaaaa gctggttaac ctgtcttgaa
    16201 atgggtaaag atgaattgat atccaaaaaa gtattagggg cataccaaag ggaacgcaag
    16261 cattctgttt ggcaaattat tttgcttatg gagggattta aaagattatt tggaacctcc
    16321 gcatctcctg ttacctcatt acgcagtctc ggattgaggg catgcaatga atttatcccg
    16381 attaaacgat tatttatgcg ccaggctagc ggtttataag taatttttcg ccaaaataag
    16441 acctttttat caaaaaagat atattgctta atttttagtt aataattctt atgtataatt
    16501 ttttcgctaa cctaaaaaac tctccgaggt ttttaaatca cttattctta tttctgaagt
    16561 tttttaggtt gcctatcatt cctcagaggt taagcaatga acagattaaa atttttttcc
    16621 aaatttcaca atgcgttact taaatttgaa tccagtattt ctaatttaag cgatcctctg
    16681 gttggattta aaatcaagga attacagact aaaaaaatat tggttcgagc tgatgggcgt
    16741 agtttagatc atttacacaa attgggtggt ttgccacaac gcgttgacag cgagaagctg
    16801 gaaaaggttc gtattaccga tgtagaaaga taccagaaat ttaatctgaa tccatttgga
    16861 tggggtgcct gtgcttctac agaagattta cgacaattcc tggaaaccta tcccgaatta
    16921 accaagcaag catgggttca taaattttat ggcagttcaa cttcacttct tactctaaag
    16981 tctgaagtag gaataggatg tggtgagcat gacggggaaa aagaagaact ggttgtcgat
    17041 agtgtctcat ttggacaaat catcgcgtct acttgcccaa aatacaggga taaatacctt
    17101 gatgggggag tggttcccaa tgctatgaag gattttaacc ccaaggtccc agagacaatg
    17161 aaacttggtg atttcagttc ggaaaaaagc actttggaat ggttattgat aaatgattgt
    17221 gaggaagagt ttgccaagct ttgcaaagaa gtatatggag atactcctct taaaattttg
    17281 ctgaggcgat ttgacggaga tcaatatctt gcagacgctg ttacttatta tgtaaaggaa
    17341 tcttcattat cccctagagt ttaatgctcg atgaggattg tggccttgga ttgactgtca
    17401 attcaacgcc atgatcctta tttatttgtg cttcaacatg gtgagatgga tctaaaataa
    17461 gcggattcat atgatgtacc tggtcaaagc gtatagaact gttattccca atcattgatt
    17521 caacgctacc atatccccat tcatttccag ttagagcaaa cgcatctgaa ggattaatag
    17581 cagcaggcag atatttttca atttcctctt cacgaaactc cagaacatcg cgtgtgcttc
    17641 gatacacttt ggtagggcca tcatagtctt caaaaattga atcaaactgt tcttgctgaa
    17701 tttcattaaa aatgggaaat tcaatttttg caatccatgg aaatttatgt tcacttaaca
    17761 gttttttata agcacgtaaa taatagggaa aaatgatatg ttgtatatcg taaccgcaat
    17821 caatttttgc aaaaaaaccc attccaaccg cagtggcttt aagcaaggcc gcttttccag
    17881 tttcttttcc tgtttgattt actgatgcca gcagtagtga cacgtcttcc agttgatagc
    17941 gaaaataggc ttcagatagg aagataatag cgttggactt gctaaaactg ggataaaaac
    18001 cacctgatga aaaccttgcc agataaggaa accccaaacg aatgcgagcc atcagcttgt
    18061 tagtatcata ctcacctaac tcctttttag cctcatcaaa ttgaataggt aaaccatcat
    18121 gcaaatggct aaagagtggt gaatcaatta ttttttgtac ggagtctaat agaaataaac
    18181 gataatggag gtaattattt tcaaaagagg ggcctgctaa agaaaaaata ctcactctta
    18241 ttggttttcg atagggtaat aatggattgg ttagtggata accaccggag gcggtaacca
    18301 ggctatgcga agaaacaatt tttttactgc ctgttaatct ttctattgga gacaataatt
    18361 caggatgccc tacagggatt ttctcaaaat agcctgcttc atttgggaac ggtaatccat
    18421 tttgaaaata cccgctctta tctcctgaca cattgacggc tgttacttta gttaatgcct
    18481 cattaatcgt ttcagtgtct ggaagatatt tcttattagc aaatactctg acggaagatt
    18541 gcgtttctat caactcatct atctgaaatt ttttatcgag gccactgcct tttaattgtg
    18601 tttcaaacca aattttaggg gggatagctt tcatcggtct tgatgcacgt gtgaaaaatg
    18661 aaaaaaattt agaccgcatg agaaatctcc cttacaaatt tggtatgcca gcaggtcagc
    18721 attattctgt taataatttg cactaaagat ggatcttaaa caaaatctaa ttctctcttt
    18781 ttcatatgca gaaaggaggt agattctgtt aattgcataa ttaaaaccat cttttgtctt
    18841 attatatttc attgtgagtc aaattaaaac gcatgtttta aaattgatag tcgatttatt
    18901 tgctaaatgt atttgttttg caataatgca atatattgat gatttgaatg gagagttcat
    18961 gtttggacga ttatggctgc gcctccctgt aaacaagcca actcttgatt tatcaaagat
    19021 ggttttgggt cgaatgcctg cggagactac ctttgaatct gtaaagcgag agtttgaaca
    19081 ggaacttcgt cgagttgggt tgaagcgatt tcaagaaaac atccatgctg agcaattgat
    19141 tttggagcaa ttattaaaac agcgggaaga gatgacaaaa aaaattgatg aaaaatgttt
    19201 gcgccctgcg ctacagcgat ctgaaaacgg atacgatgta acaggattat attggagcag
    19261 gatgcaaggg gagctgtcaa aaattcagtc taaaaaagaa cgtgttgagt tggatgaaac
    19321 gatcgattgg ttatatgctc gtcgccgttt tttaaaggag cagaataatc tgtctttaaa
    19381 taaagaacca gctcactctg cttcccccgc actttagcgt gcaaattctt tgcggcaaaa
    19441 acttacttta tctaaagttg actcttgtcc gctctcttta aaacgtgctt caatcgttct
    19501 ataacgctta aggccaccct cgcggttggc tatttgtata tttaatcctg gtctggcatt
    19561 caattccagc attaatggac catgttcttt atcaagtaca atatcaactc caagataacc
    19621 caaaccagtt agctcatagc aactggaggc tatttcaaga atttgattcc aatagggtac
    19681 ttcgatgcct acaatgggat ttaacgtgtc cggatggtag tctatggtat cattttgaaa
    19741 cacaccacca agagtttttc ctgtcgcaag atcaacgcct acaccaattg ctccttgatg
    19801 caagttggct tttccaccgg ataaacgggt gggaagtctt accatggcca ttgccggata
    19861 gcccagtaaa gtaataatac gtatatcggg tatgccttca taactgacct ctgcaaacac
    19921 ggggtcgacg actactcgtt tttcaatgat ggcatagtct gaggagccac caaggctata
    19981 agcccctgat agcaagcaag ataagtggta actcagttct tgcactgttg taagcttgcc
    20041 attaatttgt cgatatcgac cgtaaacttt gtccttaaat accagtatac catcaccacc
    20101 agaacctctg gctggtttta ccacgaaatc attatagctg gcaaatcggg tttctattga
    20161 tttgatttgt tgctcagttt caatgatgtc atataacgca ggaactgcaa ttccagcttt
    20221 taaagccagt tttttggttt tgagcttgtc atcaaccaaa ggaaataact ttcttggatt
    20281 gtatcgtaat acaaaatccg tattccgctg gttaatgctt aaaaccccat gatttttcag
    20341 gcgcctaaac aggttaatca tttcatcgca ctcgcaagtg atttaaagcg ttttaattcg
    20401 actaaacgat agccacgata ttgaccgaac cataaaatca aggacaaaag caccaaaagt
    20461 aattcgggaa aggcaaagat caaatattgt aagggctcat aactcattgc cccatatgaa
    20521 ataactgctg cagcaagact gccaattcct gattttattg cttcggaagc ccctctttca
    20581 tcccatgtga tgcacatgcg ttcgatagtc atggttaaga tgaccatagg gaataatgcg
    20641 acagacatac cggtatcaag actaagattt tggcatagaa cactgataaa gatcattaat
    20701 agaatcacta cagtgagaat ggctgcaagt cttgggacta acagtagtct taattgatcc
    20761 agataaaatc gggctaatag tccgaaagaa ataataatga caaataaagt aatgccccat
    20821 gctacatgag tctctctaaa ggccagggcg atcaagacgg gcataaacgt accaaaagtt
    20881 ttaatgccta taaaattacg caatattaaa atgatgaatg ctccaatagg aacagttagc
    20941 aagattttat agatcccttg tacattgaca ggtagctgga gtaaggagaa gcgcaagagt
    21001 tgcgagtctt ctagccctct tgatttggcc acacttaagg cattaatggg tgttggcgat
    21061 acagttaatg aaaattgagc tctattaccc ccaacaacat taaatagagg gccattccca
    21121 tattgccaaa tcagaaactc ttttggcaag ccggcactgc cagttttggg gttaatgtaa
    21181 atccagtttt ttccattaaa cacagcgagc agggatttta aatcggcctt tttttgttgg
    21241 tttagataaa tcccctggac tgtaatggcc ggaatctttg attgattgag aatcaaaatg
    21301 gtggcattga taatattgtc atcattgaat tcgttcccaa ctaaaagctt cgcattacca
    21361 tctcttttgt ttaactcttt aatagtgctt tgggcaaatg tttgaatgtc tgctgatgtt
    21421 gatctcactt gattggtaat cgtttcaacg gccgattttt gactgtcatt cagaggttgt
    21481 gatttagtta ccgaaggttt aggcaaagaa gactcatcac tgtccgtttg gcggaagatt
    21541 gctctataat aaagtgattg aggaccatta ccacgcctta tagaccatac agtttctcta
    21601 ttggatccgt ttaaattggt ggtgacacca taatttctgg acacaaaata ttcatcgaga
    21661 atggcaaaat tggggggcag gtaagggata ttaaagcttg cttttatcgg cgtatttcta
    21721 tcagcggtaa aacgtagatt ggattcaacc atccaactat tgatcgtttc cgtatcggtc
    21781 agagggacat ccagaacgat atgtctatat aaaaaaatac ctgatcctaa aagcaataga
    21841 gtgaggatca aaccataaac atgacgtttg ttatttttca ttgttcactg ggctcttgga
    21901 tttagttgtg aaagtaaggg cagggtcaac ggccccatta aaatcaataa tggcatctct
    21961 tcccaacaat aaagggtaaa ggaatcgttt cctgttggtt aagttcactt taattgttct
    22021 gactttatca ccaagcttga tattaagtaa gactaccggt cgcttaatgg gagttgttct
    22081 taataaccct ggattggtct cacttgacct tactttaatc tttactttgc cgacatactc
    22141 tccttcaaat gagtaatcac cggttttggt tggaacggta aaacgtaaat aaggaatgcc
    22201 ttttttttca atttctgtga tattcacggc atgtaatgat gctgatttag cgccagtatc
    22261 aagctttgca gataaagtga ggttttgatc gattaatgtg gctttctcta cgtagccata
    22321 gatttgagct tcactgtttg ccataagaga tcctgtcagt agtgacatta acataaagag
    22381 aacaaatttt gatctcattt aatcctcata ttgggtttta ttttggtgca atatcgtagc
    22441 aggtttaagg cataagtcac agtctgagag agaatttaat gcaatttttt ttattttttt
    22501 taataatttt gctaatagga tgtgttatta tgaagggttt gaggtcattg ttgtattttt
    22561 ttaactcagg atgaaagttt aattgacatc aagtctaatt atgcatacaa tagggcccaa
    22621 tcttagctga tagccccata cctatacatg cctcatgcga gtgatgaaaa tcaggcttcc
    22681 aagcctactg atttggtctt cattttagca attgctggtc gtatcgacgc gcaaagtaga
    22741 attctcgctc aaaaactcga taaaagtcgc agtatctatt atgcctacgc tgttatggat
    22801 tccctaagtt cctcgtacag catgttcaaa tatttttttg atctgtttgc atctcctaat
    22861 gataacgatg cgatgcatga attcttaaat tctccagccg gtcttattac cattgcagtt
    22921 gagtcagtat ttttagttac cttttctgtt ttggcctgtc aatttgagaa tgaaaaagaa
    22981 gattactata aaaaatttat tgctaatgcc tggccatatt ttcgtgatgt catgaagggc
    23041 ttgaaaaatg cttacaaagg ctggagaagc gctgttgttg cattcagttt aattggagga
    23101 gtggatgcaa aatttcttat tcttccaatg ggagtgattt tgggggtatt tgctgcagcc
    23161 aacaggtttt ggatacgtag catgctggaa gatcgtaaaa taatgatgag tgagaatata
    23221 gcgcttctca tggagataaa aaaattaatt tctttatctc atgaggaaag cttttcttat
    23281 tttaagcgaa tcagatacca gaccatgcaa actcgtaatt tcgcattctg ggctgttgct
    23341 gcaggcggac ttcttgatgg tttatatctc tacgttggtg tattgagtct ggctgtattg
    23401 tcaccgcagt tgcttatggc aatggcgctt atttgtgctt tttatacagt agcttgtgtt
    23461 attacccgta tttatgagga atatgatttc cagttgagat tattagtgac gcaaaccaaa
    23521 tgtcaattgg ctttaattac caaggagctg gaaaccaatt acgccaaatt actcttattg
    23581 caagacaaaa tggatctgga caaagttgat caggaagagc tcaaacgact aaaaaggtta
    23641 gtccataatt tgataacccg gtttgacgac agtcgtaagt tattatccca acaatcgaac
    23701 cgcacatatt tatcatctgc tttgttgggt atgaaaaatg gattatatgc ttatggtgcg
    23761 cttgcaagtg ttttgttttt agtgggttct attttagtaa tggcaggtgt ttcttttcct
    23821 cctgccttgc ttaccgcttg tattatttta ggtctggtat tagtgctcag tttcactatt
    23881 cattctttgg tgagtaatta ttggcatcag aagaagcagg aaactcaaaa ggaacgtcca
    23941 tatgagcgat tgatcgaatg gaaaaatagt cttaatgatg aatttaataa gactgagctg
    24001 ttggctcctg aagaatttca taaattacta aatgatggat tgtctttaga tccttcaccg
    24061 caatttttct ttcaagaatg gtttgaagtt ttgcgttcct tattttccgg atttggtaag
    24121 gggcaaaaat ttattgactt tgctgggaat tcgttacagg aactgggcga ggatggccat
    24181 tatcgtgata cgcctgttat gtacgtctta tctgtcttca gtgctttatt gtttggggtt
    24241 actctggctt taagagctct agccaaagga ttggggcgaa ctcccttggc gcagcaggcc
    24301 aagctgacgg aggacagcaa agaagcgtcg gttagccctg agataacgaa ggaagttatg
    24361 cagaaaaccg aagaacaaag ggaatcaatc caatctgaaa aaactcggac tgattcccca
    24421 gggcatacgg attctctgtc tttattcggt atatttgaaa ccaaaaccaa aagaaatcaa
    24481 cccgactctc cttcaattcc tcattccaaa agcgagtcag cattaaatca attaatacct
    24541 agtcagaaca gtacaattct gggtttagct taggatcgtt atacatctta aattgatggt
    24601 aaactctgaa cgtacgtgtt ttagctcgta cctcattaag taattcatca agacacaaag
    24661 ccaattgatt taattgttgc tgtatgattt ccagtttttg tgtgcaggca attctatgtt
    24721 cttcgctcac atcctggcgt tttgtttgca agtccatatg ataggatttc agtgataaaa
    24781 tagatagtct gtcaataatc attccaggtg actcggaatt gacggggcaa tgattatggt
    24841 tttcaggttc taatgcttta tatagccatt catccattgc ttccatgcgg ttattccgtt
    24901 gttgattgta ggcatctatt tcccgcttgg cttggtaaac aaattcaaag cccatatcat
    24961 ctcggcgtgc cttgtcttct gcatgccata attggaaatt aaaagcatga ttttcttcta
    25021 ccagttgaag gaattgttta tgttgatact ctataccatt ggctttccag cgtatgatgc
    25081 tcgttttatg aagggtagtg atagttgatg gatcaaaact ttcttgcatg tcatatcctg
    25141 cagattaatt tgcattgtac tttaagatga gtttagccta tgaaaatata cctatttcca
    25201 tcacttgaac tcgactgttt tgaactatat ctcatgcatt gaggctcaat gcattatgag
    25261 aggcaggttc aattggtatt agtttaacct gaattctgga gttggatcta gtttcgggtt
    25321 tttgaaatgc ctggtgaatt gctcaggata atatcctaat caccgaaata ggtattatag
    25381 atttccaaat aggtcccgtc tttttctatt tgtaataaag ccttattgat tttcataatg
    25441 agaggagcat tatttttgag ggccagtatt ccataaccat cacctatagc cattttatcg
    25501 cccacaaatt ttaactcagt tgcagaattg ctcatcgcat atttcgctgc atttgtgtta
    25561 agaacaatgg cttcaatttt ttggtttgat aatgcgaggg ccatgtcaga cagtttggaa
    25621 aattgtacca ggtcaaaata atcctgaaaa tgttctgcaa ggaggctacc atacaacgtg
    25681 tattttaaag tgccaacctt tttacctttc agatctgcta agctattgat gtcattgtta
    25741 gctttcaggg ttatcacctg tgcattgctc ggtaaatagg gaagactgaa tatataatta
    25801 gtgccaacag tggatacgat tggagtagga gccagcataa tatcaagctt cccttggtta
    25861 agattggtat atagctgttg aatattcatg cccttgtatt ggcattccat ttcaatgatc
    25921 ttgcaaatgg aattcatcaa atcgatgtta aatccaaaat atgtctctcc tcctcctcca
    25981 gatcttgata caaatggggg cgcaaattcc ggaacaccaa tgataagtgg ttttccaaag
    26041 gtgtaaaaat ttaaaaacat caaaagaatg aacatgaatc gtttcatgtt tttaagtcca
    26101 tttaggatgt acttaaaatt taggaggagc aatcgatttt gtcaaattaa agtcaatatg
    26161 ttttttaatt gatgctttta tttgcttttt gcaagccaac gatccagagc attggcaaaa
    26221 ttggtttttt ctttcgcgct taatgcagag gggcctcctg tgcgctctcc agctgaacgc
    26281 aattgttcat tgatgtctct aagagttaga cgctgtttga tattattggc tgtaaacagt
    26341 tctcctcttg gactcattgc taacccttgc ttaactatta cttctgctgc caaaggaata
    26401 tctgctgtga ttaccaaatc tttagctttc atatgactcg taatataatg atctgctcgg
    26461 tcatagcctt tttctacaag aactgagcga ataaacggtg aatttggata agtaaggtag
    26521 gaattagcta ccaggataag attggtattg gttcttatgg ccgcgcgaaa gaggatatct
    26581 tttatcattt tcgggcaagc atcggcatca atccagatcg tcatttgcta tcctaaagtt
    26641 ttcaaatcaa tagtttaagg gtatagtaaa aatattatcc ttttaaatcc ctattgggga
    26701 aaggattatt ttaagatgtt agggaagtgt cgtaatgaag cagttaataa gtataataaa
    26761 aggacaaatt caacagctcc ctattcccga tctgaaacat ttgttgttaa gtcaccttaa
    26821 agaagatgct cacgatttaa cagaactctt ttgccaacaa atcccggctc agaaaaatca
    26881 attctcgctt aatcactcag tcccatttgg tttaccggct tcgctatctg tactcacaat
    26941 ctttttgact tatgccccca atctgcttca ccgagagtta tcagagcagt tgctgacaat
    27001 gttagattca ataaaagaga ccgaaaccag tgttgataat caattagcag agagatgcac
    27061 gaggcaattg aattattata gtgatgcaaa acctgtcctt atcgcgttga aagaaagagg
    27121 agccaaggat ttaattcaga tcttggagca agccgatgag cgcagtttgt cagctttttc
    27181 tcatctggct aaagataccg atttaaatgt tttaattgaa acctttttag tcaaaaacaa
    27241 taaagatttg gatttagtca atagaaacca tttggtacaa tttttacgtc aacctgattt
    27301 ggcaggatgg ttaacccgtt tccttgattc attaaccgat gaatctatca atgctctctc
    27361 aattcgattg ttgttgtctt tggtttcttc tgagaaagcg attgagaaac tgaaggaggc
    27421 tagagtctgc cttgctcagt atcctttttc catagatttg catgccatgc gggctgtgtt
    27481 tgatttttat cagtatgaat taaaaagaga tttattttct cctgaaagcc atttagtcat
    27541 gcagttgctg catgatttat taaaaaacac caaattagac aaacaacaag agttttttca
    27601 gggcttaagt caggaaactg tgcttttgat tattgagtat tgtatagcgg aatataacaa
    27661 aacgactggg gaagagaagc agaactgtaa aaacttgctt accaggttat gttcggcttt
    27721 ttctgattcc agccaggact ttttggggga aataagaaca aaaattaatc aactggatct
    27781 ttatctcttt gatacccctc agctatatca gctggcatcc gatttaataa ctaaatcata
    27841 taactcagga aaggagccgt tatccagtta tccaatcgct ttattgttat ccatgccaca
    27901 atttgtcggg gtttgtacgc ctaaggtttt aaaacaatta gttgaaagat acagcttgta
    27961 taccttaact ctgaatcaga aggactataa gcaagacctt tgttttaaag aatatgctcc
    28021 atattttgat gaaatcaatg agcatatggc tcagattgag cgtaatctgt gtattcatcc
    28081 ggaagctcag tcattttggc tggataaaaa atacagctta ttgcagttta gagttgagat
    28141 tagtaaaagt gctttgcttc accaaatgga gtgtttactg gaggcgaaca agggaggaga
    28201 tgagctacat aataagggat tagaggtgtt atatcattat tacgccttga gttatcccaa
    28261 tttacgttcg gatttattcc ttaaagtggt aaatcatatt tattcacggt tttttattaa
    28321 ggggaataat gaaaccgaag ctcggaacgg gttatttcac tggttaaaac aaagttttcc
    28381 tctaattgat aagttgccca aagaattaga cagaaaaaaa gaaatttttt tatataactc
    28441 tgccgggaag aagattggat ttcttggtga gtctaatgct gcaatgactt ttgttaatga
    28501 ggaaatcgta ttattagctc gaacgggctc tatggatatc aatgagcctt tatatgatca
    28561 agagggtttg gttctagggt atttaacgga agagagttgt ttaagaagcg aaagtgccat
    28621 tcacaaaaat gctgccgcct gggttttagc tggtttgtcc aaaagtgatt tggaaagttc
    28681 ctcgtttgga ttggagtccc tgttacataa tgtgttattc gagaacgcga taggggtttt
    28741 atatcaatgt gaatccattt gccttgatgc caataagcgc atatggctga ataataaatt
    28801 attaaaagaa atccaagagg ctccaggaga aatccctgca tctgttttat atccattgct
    28861 cgatcatttt gaggatgaaa cagtatttga attattgggc gtcatcagga ataaaaataa
    28921 tgcgcttgag ctttttcatt atattttaaa ccgagactca aggcgttcta ttttactgaa
    28981 tggcttgtat gaatctgatt ttcaaagatt tttggaacat caaggcgctg atgtttgctt
    29041 ggctgattat ttggttaatt attatgataa accctggttt tcagaagtct tactacgatt
    29101 tgcttaccat ggtaaaaaat ataaaaagcc agatcttcta agtagcgcct tgactttcat
    29161 taccaaggaa atttctcaag ataagaagca agagacaatc tgtgatgctg tactggatcg
    29221 tttaataaat tctgaagcat gtgccgcatt agtgttaaag gagtttcttg gtgatagaac
    29281 tcataactcc attcagaagg taaataatcc ggaaattggc aaagtaagcc aattttttga
    29341 taggcggcat atagtgcccc ttattgcaca gttaaataag acttcttatt gggagcaaaa
    29401 tgcgcagtat aaattggctt tacatatttt ggctaatcaa catggacgcc ttttttctga
    29461 aactgatttg aatctcgatt ctcctcaggc ctggcaaagt aaagaattaa aagaactggc
    29521 ctgttttacc agcaggcatt tatccaaaaa acgtcctttc gataataaac atgatattgg
    29581 atatcgtgtt ttaggcgagc ttcttttcag gtgcgccaat gcggggataa cgtctttatt
    29641 ttacaagcac aaagcgttga atcgtgcaat aacccgattg tcaatcacag aacccttttt
    29701 agtcaggatg gtggataaat tatggatgcc taaaggaatc agggaacttt atggaaaatc
    29761 tttgtttttt aagggctcct ggtttgatga tcaagtcttc ttgcaaaagg aattaaaaga
    29821 ccatcatcct ctgctggact ggagtcattt tattaagcaa acctggagta aaagagataa
    29881 acagaagaag tcacccataa tatgttctta tttgctgagt tatacaggta agaaaagcgt
    29941 attgttgcat ttattacagg attattttaa ttcttttcaa ggaatgccag actacatcag
    30001 gccagtcagt caattattga gatttttccc tcaacgcgat gtgtccgcag tcatatacga
    30061 tgcgctggaa gctgaaatga taaaaaaacc tcagtcatta gacaggcaaa ttttaagtga
    30121 catggccttt tattatggaa aacagttggc caggaaggac acaagtttcc cccaggcgga
    30181 tattaattta ttaacgtatt gggggcagaa taaacattat tctttagtaa aaagaggatg
    30241 tgaactatta gtcagggatt gtgaggataa aggagtaaaa aaacgattga ttagtgctgc
    30301 caaagaagcg gaagtagaac aggatttgag ttccagtgtg caaacatttt attttgggct
    30361 aattaaattt tttaaaagat tatggcatta tggctttaat gcggaaaaca gctcatcaaa
    30421 aattataaag ttttgtgatg atcgcacccc cggccctact cgtaaaaaag caggggatct
    30481 catcaatgca ccggttgcag aaagcagaac caattctttg catttaggct tttctgaaag
    30541 acgcaagcag ttaattagtc ttttagctac tattaaaagt agtccggcgc acttcacacg
    30601 agttgttaat tattcagaca atactcaaac attctttgga gaacaatcca aacagtctat
    30661 tgactataat actcctgcaa taccaagtaa ctttgaaagt ataatgtagg attgtcctta
    30721 tagggcattt ataccttagc tcatatttta ttagccaggt gttctgaatg cattaatcaa
    30781 cccgatgcat gacttatcaa tggaagtctt atacgagtag ggatattata tgagtgtttt
    30841 cttaaatcga tgccgatatt gatgataggt ttattagtga agatttaata atttttggtt
    30901 acataaacac tatggggtga atcatgagaa ttttgctctc tttttatctt ttattgcttt
    30961 caacagggct ttttgcagaa tctacttttc ctgatggttg tcgggctgtt cctgtacaag
    31021 gtcaatcagt gactttaaaa gccaagaaaa ataagctggt gtttattcac aatgtgacca
    31081 atttggatct atggattacc catccagtca cagatcctgg ggccagtgct ggttggacaa
    31141 gtcgattaca ggctggtaaa tggtcagctt tgttagtgga caaacctgcc tttattttaa
    31201 attgcatcga atcaaggcca gggcatgaac aacagatacc ttgtgaaaat gctattgccg
    31261 tatgtcaatg gaagggggta aaaataccgg caagcgatca aggtactttc tgggtagcag
    31321 aagacctctc gttagcagcg ttaactgcag cagttggtgg aagaggcttt gtattgccgg
    31381 agaaataatt tatcgatgaa tatcttgggg catggctatg gattctatgc tgcaaccaat
    31441 tatgtcaact aaaagtacaa atcaggatgc tgcccccagt gatcctgagt ttttggcaaa
    31501 taacggaatc agtttagacc gccaccatgc tcctcaatct tgagccctaa aggcaattta
    31561 aaattttaat actgagtact atggattgga attatgcaat ctaaagcaaa ttttcgtttt
    31621 attatgagca ggacttcttg ccttgtaaga ttggaaaaag atgaataaaa ggcgttttat
    31681 acagaattct ctgatagttg gcagcatatt cttgctagtt atagtgataa atggtagaac
    31741 aggacttaag aggttttagt tagcattagg tttgaagaga aaaatggtga aaagtgagta
    31801 aaaaatccaa agatcccttt tataagaggg aacgcgaaaa atacgccgag ccaattccaa
    31861 gccgggaata catcatggaa atcctggatg aatacggcag gccaatgtct cgcagtaaac
    31921 tgtttgataa attggatttg agctctgaga gccagcagga gtccttgggt tttcgcttga
    31981 aggctatgct gcgtgatggc caaatcatgc aggacaggcg tggacgcttt tgtttattac
    32041 aaaaaattaa tttattgcgt ggaacggttc aaggccatcc tgatggtttt ggatttttca
    32101 tcccggatga tggttctgag gatatggtgc tctctgctaa agaaatgagg gctgtcatgc
    32161 atggagatct ggtgcttgcc tatcaatctg gattggatag aagaggaagg ccagaagcta
    32221 aaatccacga agtcctggaa catgcgaata ccacggttgt aggccgattt tttactgatc
    32281 atggcgtgaa ttttgtcatt cctgatagca aacgtctgac tcaggatatt tcaattccac
    32341 aagaattcat tggcgaggcc aaaaatggcc aaatagtgct ggttgagttg atcgcatatc
    32401 ctaacaagcg ttcgcaagct ataggcagag taatccatat tttgggtgag catatggctc
    32461 ctggcatgga aattcaagta gcaatccatg ctcacggcat tcctttcgaa tggccagatg
    32521 atgttcttgc ggaagtgggt aaaattccac aacagatttc cgaggaacaa ttaaaggggc
    32581 gaaccgattt gcgtaatctt ccttttgtga ccattgacgg ggaagatgca aaagattttg
    32641 atgatgctgt gtattgttac aaaaagccca aaggcggctt ccaattgtat gtcgctatcg
    32701 cagacgtcag tcattatgtg gcgaaggatt ctgctttgga tcaagaagca gcaaggcgag
    32761 gaaattcagt ttattttccc ggtaaagtgg tgccaatgct accagaagcc ttatccaatg
    32821 gcgtttgctc gttaaatccc catgttgacc gcttatgtat ggtggctgag ttatcgatta
    32881 cccaagaagg aaaaatatcc cgatcccgct tttatcgggc agtgattcat tctcatgctc
    32941 gtttgaccta cacgtcagtt ggggcatggc tggaacaagg caaggcagat gaaaaacatc
    33001 aagccttgtg gcctatgctt gagtctcttt atgatttata tcatattctg ctcgataccc
    33061 gtagacttag aggagcaatg gatttcgaga ctacggaaac tcgtatcgaa tttgatgaaa
    33121 ataagaaaat aaaatgtatc gtgcctgtaa tacgtaatga cgctcataaa ttaattgaag
    33181 aatgcatgct ggcagcgaat gttgcaacag caagattttt agaaaaggct gaaattccta
    33241 ctttataccg agttcatgcg gctcctgaag aggataaaat tactgcattg aggcagtttt
    33301 taggggagct gggattgtca ttgggagggg ggagaaaacc tggacccaag gattttcagc
    33361 gtaccatgaa catgattggt gaccgaccag agaagcatct tattgaaacg gtaatgctgc
    33421 gttctttaaa acaggctcag tacgttgaat cgaatgaagg tcattttggt ttggcctatt
    33481 ccgcttacac gcattttaca tcaccaatca gaagatttcc tgatctatta attcacagag
    33541 caatagggca tttattggat aatcatcctg tttatgagtt tgaatatagc catgaagata
    33601 tgaatcgttt gggtaaacat tcctcgatga cggagcgccg tgctgatgaa gcgacccggg
    33661 aagtgattac ctggttaaag tgcgagtata tgcaagacaa attggggcag gtatttaagg
    33721 gtcgaatatc cgctgtgacc agctttggta tttttgtgga acttgatgaa atttatgtag
    33781 aaggcttggt tcatgtcact tctttaaaaa acgattatta tacgtttgac tctgcaaaac
    33841 atcgtttaat aggggctcgc ggcggtcagg tttatcgttt gggagataaa atgactgtgt
    33901 tggtagctcg tgttgattta aacgaacgta aaatagattt tgagcctgtc gaggatgaag
    33961 tttgtaatga atgagcagta tgtttacggg ttgcatgcag tttctgcatt attagcaaac
    34021 ccgcatcgaa tgatcaaaaa actctttgtt aatcaagata gaatagataa aagacttcat
    34081 gagtttttgg tcaaggcaga gaacgcccat gtccccatcg aaaagctaag cgcgcaaaaa
    34141 atgaatcagc agttttcaga gtttacgcat cagggcgttg ttgcactcgc ttcggcatta
    34201 gccgaatacg gtgaaagtga tttggttact ttattagaaa aaagtaaaaa gcctgtgctg
    34261 attcttattc tggatggaat tacagatccc cataatttag gcgcttgttt gcggtcggct
    34321 gatgcaaccg gtgttgattt tgttgtgatt cctaaagata aaagtgcgag tattactccc
    34381 gtggtcagta aagtggcttg tggcgctgct gaatcaattc ctttggtgag agtaactaat
    34441 ttagcaagag ctatggacat cttaaaacaa caaggggtct ggatctttgg agcagctggc
    34501 gaagcagaga atttacttta tgcaatggat tgttctggaa acatcgctct tgtaatggga
    34561 gcagaaggaa ccgggttaag aagattgacc cgcgagcatt gcgatggatt gttttctttg
    34621 cctatgatgg gaagtgtaga gagtttaaat gtgtcagtgg cgactggtgt ttcattgtat
    34681 gaagtaatta ggcaaagagg gcaatttcgt gagtgaatta aaaatcaaag cagccaaagc
    34741 agctatagct tatattgaag atgatatggt tataggtgtt ggaacaggct ctacagttaa
    34801 tttttttata aaagaactgg cagcaatcaa acataagata gaggcttgtg tagccagttc
    34861 aaaagcaacc gaggcattgc ttcgggcaga aggtatccct gtaattgatt taaattcagt
    34921 acaggattta cctatctatg ttgatggcgc tgatgaagtc aatgaacgcg gtgaaatgat
    34981 aaaggggggc ggaggagctc tgactcgaga gaaaattgta gcgaatgtag ccacacaatt
    35041 tatttgtatt gtcgatgaat ccaaggttgt aaaacgttta ggggaatttc ccgttgctgt
    35101 ggaagtcatt ccaatggccc gtagttttgt tgcacgacaa attgttaaat tagggggaga
    35161 ccctgaatac agagaaggtt tcgttactga taatggtaat attattctgg atgtgtttaa
    35221 tctgagtttc tcaacaccta tggccttgga agacagtctt aatgtaatcc cgggtgtcgt
    35281 tgaaaatgga gtgtttgcca aacgtttggc agataaagtg ttagtggctt cagcaagtgg
    35341 tgtgaataat ttaaaatagt cgacttgtat acgttcatat ctcaaaacat taattaccaa
    35401 taattttata ggttcctcaa aaatggatac gcacaaggtt tttgtaaatc gaattataaa
    35461 tatgagaaaa attaaactga ttggtttgga catggaccat accctcatcc gatataattc
    35521 gaaaaatttt gaatccttag tttatgatct cgtcaaagaa agactggcag aaagctttca
    35581 ctatcctgag gaaattaaaa aattcaaatt taattttgat gatgccattc gtggcttggt
    35641 gattgacagt aagaatggca atattttaaa actgagccgg tatggtgcca ttagattgag
    35701 ttaccatggc acgaaacaga tcagttttag cgatcagaaa aaaatttaca gaagtattta
    35761 tgttgacctg ggtgatccga attacatggc aattgatact tctttttcta tagcattttg
    35821 catcctgtat ggccagctgg ttgatttaaa agataccaat cccgataaaa tgccaagcta
    35881 tcaagccata gcacaagacg tgcaatattg tgtggataaa gttcactcgg atggtactct
    35941 gaaaaacata attattaaaa atttgaaaaa atatgtgata agagaaaagg aagttgttga
    36001 agggctgaag cattttattc gctatgggaa aaagatattt attctgacca attcagaata
    36061 ttcttattct aaattgttgt tggattatgc cttgtcccca ttcctggata aaggggagca
    36121 ctggcaaggt ttatttgagt ttgttatcac cttggcaaat aaaccccgtt tcttttatga
    36181 taacttacga tttttatcag ttaatcctga aaacgggacg atgactaatg tccatggccc
    36241 aatagttcct ggtgtatacc aaggaggtaa tgccaaaaaa tttactgaag atctcggggt
    36301 cggtggagat gaaattctct atatagggga tcatatttac ggtgatatat tacgattgaa
    36361 aaaagattgt aattggcgta ctgctttggt tgttgaagaa ttaggtgaag aaattgcatc
    36421 ccaaataagg gctttgccaa ttgaaaagaa aattggtgaa gccatggcta ttaaaaaaga
    36481 gttagagcag aaatacgtcg atctttgcac aagaagtatt gacgaaagct ctcaacagta
    36541 tgatcaggaa attcatgact tgcaattgca aatatccact gttgacttac aaatttcaag
    36601 attgttacaa gaacaaaaca gtttctataa tcccaagtgg gaaagagttt ttcgcgctgg
    36661 ggcggaagag agctacttcg cctaccaagt tgatagattc gcctgtatct acatggaaaa
    36721 attatccgat ttactcgagc attcaccaat gacctatttt cgtgccaaca ggcgattgtt
    36781 agctcacgat atagatattt gattttttct attaatcagg taccgggatc ggacgagggg
    36841 gagtgctatt catctccagc aaagtctatt gcaatttgta tagggaa
//
LOCUS       DACVWI010000011        31037 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.011, whole genome shotgun sequence.
ACCESSION   DACVWI010000011 DACVWI010000000
VERSION     DACVWI010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 31037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31037
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.011"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(21..2117)
                     /locus_tag="JBH85_01910"
     CDS             complement(21..2117)
                     /locus_tag="JBH85_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HAU0944940.1"
                     /translation="MRKIIAILILISASLSMAYSKDNSLISVKVLPLPENRVRIDFQF
                     SKPLKQLPASFITQKPPRLVLDFISTDMQIPSDQKTKTIQLGSLHSYNIVAVGDRVRA
                     ILELDRSVSYSGSTAGSIYSLVLNGKSNDLFENSKEVFITNQVVNAKHEIKRIDFRGI
                     EKQGGRVLIDVSDTGIPIDVTQVGKEIVVNFLNTKIPLNLMKRYDVSDFHSPVQIITM
                     QQEGKKVRMTILSKGDYGHFVYQVNKQFMVDVFPLTAEEIRQAKLKKQVFTGKRISLN
                     FQNISIRAVLQLLADFTGINMVVSDKVQGDITLRLNDIPWDQALDIILTTQGLDKRRK
                     GNVMLIDTKASMDKMEEEQLKSQQTIEKLEPIRSDLIQINYAKAADIAVLIKDKQNSL
                     LSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPVKQVLIEARIVEVTKDFSQD
                     IGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLNLDLAAAPLTGATPASVGI
                     ALAKLNDNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQEATSSGA
                     TAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLGVPAIITKEIQTNVLVN
                     NGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRIITN
                     ALSITTIEGREKDVYK"
     gene            complement(2121..2708)
                     /locus_tag="JBH85_01915"
     CDS             complement(2121..2708)
                     /locus_tag="JBH85_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilP"
                     /protein_id="HAU0944941.1"
                     /translation="MIIKNNQTLLILGFFGNSLRTLLTSENFRKSLFTALLVLLLSAC
                     SGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFPENDNRRNPFKPIDQKKRNDIY
                     APDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRI
                     ILIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE"
     gene            complement(2705..3340)
                     /gene="pilO"
                     /locus_tag="JBH85_01920"
     CDS             complement(2705..3340)
                     /gene="pilO"
                     /locus_tag="JBH85_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HAU0944942.1"
                     /translation="MCLNPNIRLIKIMDTVNLSELTLENVGQWPMPVKIGVILGISIL
                     IIGLGYWLIVKPNFEQLEIQEAQEIALKTEFEKKQHQAANLQAYRNQLQLMNERFGTM
                     LKQLPAKNEMPGLLEEISKTGIASGLKFELFAPQPEVVHDFYVELPIKITIVGSYMQL
                     ARFLSRVAEMNRIVTLHEFSVEGVSSGDGKTVSQDELVMAITAKIYRYRAQ"
     gene            complement(3318..3866)
                     /locus_tag="JBH85_01925"
     CDS             complement(3318..3866)
                     /locus_tag="JBH85_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilN"
                     /protein_id="HAU0944943.1"
                     /translation="MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVS
                     HLISNQMNRNQILQKEITALDEQIKEIKALKQIREGLISRMSIVQNLQSTRTLMVHLF
                     DELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
                     NVEKKQSPNNEFKLSFVLKPKY"
     gene            complement(3870..4934)
                     /locus_tag="JBH85_01930"
     CDS             complement(3870..4934)
                     /locus_tag="JBH85_01930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HAU0944944.1"
                     /translation="MLKLLKPKHRSILGIDISSSAVKILEISGSGEDICVEGYGREEI
                     PASALEGNIIKDVDVVANCIKKLVERLKFTSKNVALAVPDSAVISKVVQINEGLTDLE
                     MEELVVIEADKYIPYPIDEINLDFEVLGHSAKSSSLLDVLIVASRAENVNTRVEAAHR
                     AGLEPKVVDVESYAVERSVQQIAQELPASGQDKIVAIVDIGANYTHLFVLHGMRLIFS
                     REEKFGGMQLVEAIAEHYHMNLEQAIALKNQGKLPEDYESAVLEPFKDMILLQIKRTL
                     QFFYSTSQHGFVDHILLAGGMARQSGLAALIQEQLGVTTTVANPLSHMSFGKKVNLDV
                     INSDAPTLMVACGLALRHVE"
     gene            5350..6360
                     /gene="ravI"
                     /locus_tag="JBH85_01935"
     CDS             5350..6360
                     /gene="ravI"
                     /locus_tag="JBH85_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavI"
                     /protein_id="HAU0944945.1"
                     /translation="MTRLEELLYTLTSVIIRYHDSQPKVLNKLIVESNPILLRRKALA
                     LAKEIIQDKDGECKGRLEELIQNCTKGYPDRKPFLYFILNEVLFLKSMLDRKSSFEPS
                     KLEEYKKQIAQLLIDLKQLMITPKSKTYEVKYTSATESAETSISLSGVKNDGYVGGEF
                     CNSGNLIKEEVLEALNIHINSKNTAECSSDEEIKALAESLCLEHQNALLVPELMEKAQ
                     ILSVSSKEQEKELLTKTQQAEKDKNTISEQEATILEKDKEIEKLKEKVSELTRSMPRP
                     VFNPVLPLGYSSLFFNTKLGTQAKQQTTMIDVSDLPMVKSSETTDTQPNQSFSMSNGH
                     GD"
     gene            6512..8896
                     /locus_tag="JBH85_01940"
     CDS             6512..8896
                     /locus_tag="JBH85_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HAU0944946.1"
                     /translation="MKKMAYFWRKGLWALMSLFFLLIVAGSLLYLYLESQLPNVDSLK
                     TVQLQVPLQIFSKEGLLIQEYGEKKRIPVTYDEIPPTLIHALIATEDQRFFEHPGVDV
                     MGLGRAAVSMLKTGTKSQGGSTITMQVARNFFLSRKKTFLRKFNEIMLAIKIDRELSK
                     EKILELYLNRVYLGNRAYGVGAAAMVYFGKSLKDLNLAELAMIAGLPQAPSTQNPIAN
                     PLAAKKRRDHVLERLLEEHYINEEQYQNAVNQPITAKYHGTNIKVKAPYVAEMIRQSL
                     YDNFGPEAYTKGYKVYTTIDGKLQNTANEVVEKNLIDYDHRHGYRGPIANIGEKDSQS
                     PKIRQKYLRQYPELNSLIPAVVTEVREKEATAALQNGQIIIIPWEGMSWARPALKRGG
                     WVGKSPTKAQQVVAAGDIIYVHPTEKSWQLAQIPEAESAMVAMNPKNGAIEVLVGGFN
                     FSKSKFNRATQSSRQPGSSFKPFVYAAALNNGYNLATLINDAPIVVDDPSQPNLWRPH
                     NVNLKFNGPTRLKQALVQSKNLVSIRILDDIGIDYTIDFLTRFGFNKKSLPRALSLAL
                     GSLSISPMDLTTAYAVFANGGYKVEPYLIDHITDADGKILLQAKPSVVCDPCDKDKVD
                     ASTLAPRVISEDIAFLMNTALRDVIQHGTGRAARVLNRQDIAGKTGTTNDQVDAWFAG
                     FNSNLVVTTWIGFDNPKSLHEYAANLALPLWIDFMKVALKDKPETELKQPENVIAVRI
                     DPVSGLLAKPNQENGIIEYFRQNEVPSEEDQGPVYNAHNDQQEEELAPVEESLF"
     gene            complement(8968..10089)
                     /gene="ald"
                     /locus_tag="JBH85_01945"
     CDS             complement(8968..10089)
                     /gene="ald"
                     /locus_tag="JBH85_01945"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HAU0944947.1"
                     /translation="MLVGVPKEIKSHENRVGLVPSSVREIIRAGSDVLVEKGAGLGIG
                     ISDDDYRNAGAEVVDTADDVFANAELIVKVKEPQPIECKRLREGQTLFTYLHLAPDPH
                     QARLLKESGVTAIAYETVTQDDGGLPLLTPMSQVAGRMAIQAGAHCLEMAQGGSGILL
                     GGVPGVAAANVVVIGGGVVGTNAVRMAMGMEARVIVLDRSLQRLNELDFQFGSKLNTV
                     YSTADSIEKYVSSADLVIGAVLVPGAAAPKLVTRSMLSSMRPGSVLVDVAIDQGGCFE
                     TSRATTHQEPTYMVDNVVHYCVANMPGAVPRTSTFALNNATLPFILSIVTKGVKLALL
                     SDPHLLNGLNVHQGKITYEAVARDLGYEYTPAAAALSGR"
     gene            complement(10101..11039)
                     /locus_tag="JBH85_01950"
     CDS             complement(10101..11039)
                     /locus_tag="JBH85_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HAU0944948.1"
                     /translation="MSTLVLVEHNNQQLHPATRNTLSAALELGDKITLLVVGYQCRSV
                     AEEAASLEGVHAVLHVDNPCYEHQLAEAVSDLVVSFANSFSAILAPSSTYGKNILPRV
                     AAQLDVTQISDVSKIINSDTFEHPVYAGNAIETVRVLDSLKVMTIRTTAFDPITSSQE
                     VCCIESIDKEFQAKGSQFVRHELSKSERPDLGSAKIVVSGGRGLQNAEKFKLIEELAD
                     TLGAAVGASRAAVDAGFVPNDYQVGQTGKVVAPMLYIAVGISGAVQHLAGMKDSKVIV
                     AINKDADAPIFQIATYGLVGDLFELIPQLIEQLKNR"
     gene            complement(11053..11802)
                     /locus_tag="JBH85_01955"
     CDS             complement(11053..11802)
                     /locus_tag="JBH85_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HAU0944949.1"
                     /translation="MKILVAVKRVIDPYVKIRVKSDNSGVETQNIKMAMNPFDEIAIE
                     EALRLREKNWATEVIAVSIGSDSSQETLRHALALGADKAILVRTEKSFESLNIAKILN
                     SIVANEKPDLVLMGKQSIDGDNNQTPQMLAALLNWPQATNASKIIPDNNNLEVVREID
                     GGLETLKVQLPAVISTDLRLNEPRYASLPNIMKAKRKPLDIIDLDSLGLSLKQHVEIL
                     KVNAPATRSAGVILDSVAALLDKLQHEAKVL"
     gene            complement(12210..13454)
                     /locus_tag="JBH85_01960"
     CDS             complement(12210..13454)
                     /locus_tag="JBH85_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HAU0944950.1"
                     /translation="MTIEKELKNFVRLYAEWDTTNNCYKSHLDKDTLLRLERDFARFI
                     NQQLLIDGPEKEKIVKNYKRLTLCFHPDHASGFSPEMVWLENNLSQSKNNGACFKILG
                     LCYEKLISPEKFKDSSLGDIKSKDDFKQWLENLRSKATTYSGQSFCDSLINLLEQSSG
                     FFDDTGKIKPRGLRVLLRFIPVVFASYGTFLFAEELFAIYALYFILLKGGQYLESTES
                     SQLKKIGCTLQEISIITATASTTLLVRLLEMTFWASRQFLDVSLQIGSAILKPMLPSP
                     ETKEKSESDTATNLCRDLILASHNTSEGMQFKTPELKVISAPLESYLGLNAQQFFGDL
                     RIGREKRLKVEAFLFKMRVLDSLPSPLEEKLVEAQKELDKIKKDTKVFTSNTAKAVKE
                     AEQVISLLQDQDSMQLVVYNGT"
     gene            complement(13494..14141)
                     /locus_tag="JBH85_01965"
     CDS             complement(13494..14141)
                     /locus_tag="JBH85_01965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HAU0944951.1"
                     /translation="MVSMTQFEKTFNFMKKIWVIITYIILVVLSYYFLDRTLATYFHS
                     LDLRVNAHVLTYLTALGKWKIYVALFLITALYFRYIQQNKQYEIRSWYLLGCVLLPNL
                     LTFALKISLSRARPDLLFDNNLYGFYWFQLNDNYWSFPSGHSITITALAAGLGFLFPR
                     YFFLFIGAALLVAATRVILYHHYLSDVMTGFYISMLLVGLFTQYLQRNHYLNKIN"
     gene            14389..15048
                     /locus_tag="JBH85_01970"
     CDS             14389..15048
                     /locus_tag="JBH85_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HAU0944952.1"
                     /translation="MPEFTLIQQICIWALPVLLAITFHELAHGYVAYRCGDNTAKMFG
                     RLSLNPIKHIDPIGTVLLPLLIGVITNFNFVIGYAKPVPVNQSQLRKPRRDMILVTLA
                     GPLANLIMAFLWAGCFKIATLLSPQSSMTALFLLVTARAGMMINLILAFLNLIPIPPL
                     DGSKVVINLLPARQAIAYAKLEPFGFLILIVLIFTNVLGYILTPLIYGSLYILSAIFN
                     L"
     gene            15045..16097
                     /locus_tag="JBH85_01975"
     CDS             15045..16097
                     /locus_tag="JBH85_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase"
                     /protein_id="HAU0944953.1"
                     /translation="MNILADALLPGLDSAFPPPFTVTLYHKADEIPELLHHKDVLLCR
                     STLKINGDLLKNHQIKVVATATSGTDHIDFPFLESQNISIIDAKGCNAISVADYVVAC
                     LAYLDKQQLIQGKTAGIIGLGQVGTKVYERLNAAEFQLCLYDPPKATRDTSFQSCSLE
                     DLFECDFLCVHAELHSNAPYPSLNLINRDFLKELKPGCIIINASRGGIVNEEALLHLG
                     SAILYCTDVYNNEPHIDNRVVSKATLCTPHIAGHSLEAKFAAVAIVSRKLHQMLGLPY
                     PQFATPEKPYRLNEDSNWRELALSIYNPIHETLELKHAGNLSSAFLTLRKNHHHRHDF
                     TTYFDSDSIKKYPLLG"
     gene            complement(16142..17593)
                     /locus_tag="JBH85_01980"
     CDS             complement(16142..17593)
                     /locus_tag="JBH85_01980"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HAU0944954.1"
                     /translation="MKLSQLLEPWIKRDIIDGTVSDIKNDSRLVKEGDLFAAYPGAAS
                     DGRLYIEKAVASGAVAVVYEPNNLPQGITLPTAIPCIAIPQLAEKLGEIAKRFFNNPS
                     QFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGRVDSLKPLENTTPDALC
                     LQRLMHQYKEGGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYG
                     AAKSRLFERAELQWAIINQDDDFQDLMSNVLKTHVKKVTYGMHQNCDVKAIQWNMDIT
                     GTEIEVKSPWGHHLLKIKALGKFNIYNSLAVYSSLLASGYNPEKVVQIMAELKAAPGR
                     MEIVAQSPYVLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAA
                     SMYADNIVITSDNPRSEDPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDI
                     ILIAGKGHESYQQIGNTKHVFSDQEVVRRLMNN"
     gene            complement(17614..19275)
                     /locus_tag="JBH85_01985"
     CDS             complement(17614..19275)
                     /locus_tag="JBH85_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HAU0944955.1"
                     /translation="MKKTHHFARLVTVAVFFSLILAVLIWRMVDLTVLHRQFLQGQGD
                     ARSIRVIDIPAYRGMITDRNGTPLAVSTPVESVWVNPKEFSPDEEQFMQLAKYLNLAP
                     KELSRKIVRAENREFVYLQRQLPPPLSKKIEALKIPGVNFQKEFKRYYPDSDSISPLI
                     GFTNVDDQGLEGIELAYQDWLMGVVGKKRVIKDRLGRVVEDLGVLKEPRPGHELTLSI
                     DRRLQYLAYSELGKTVEEFSAKSGSVVVIDAENGEILAVANVPSYNPNARGHYDKETY
                     RNRAFTDTFEPGSVIKSFSIASALETGLFTPDTIIDTNPGWMTVHGRTVRDIHNYGVL
                     DVTGILQHSSNVGVTKMVLSTPAEQLIGFLQKCGFGQRSELAYPGESEGGIVKAKDAN
                     PFVLATLGFGYGLSVTALQLAKANLIFANKGRLIPVTLIHNDTPSNGIQVMQPKTAEN
                     VLLMMEAVMNKGTGKGARVPGYRVAGKTGTARVAGKNGYKDRKYTASFIGIAPVSKPK
                     FVVAVIIHEPSRKGYYAASVAGPLFAKVMSGALRLFNIPTDEPVS"
     gene            complement(19657..19995)
                     /gene="ftsL"
                     /locus_tag="JBH85_01990"
     CDS             complement(19657..19995)
                     /gene="ftsL"
                     /locus_tag="JBH85_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HAU0944956.1"
                     /translation="MNAAAKVINQGNLFNGQLADMQMSKSLYMLIVLLAAVLVSAFAV
                     IYSTNSYRLTLSQVQQEEQQTHFLQLQWGQLLLEQASLATPARVEELAREKLGMTLPT
                     SANTYLLHPQ"
     gene            complement(19992..20996)
                     /gene="rsmH"
                     /locus_tag="JBH85_01995"
     CDS             complement(19992..20996)
                     /gene="rsmH"
                     /locus_tag="JBH85_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HAU0944957.1"
                     /translation="MAGRRSVHDGWVTRGNENVFFITEREMAKHQSVLLHESIKGLAI
                     KADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQYAKDYFGLDKRFQIFHG
                     SFAHIKEFASQAGVLGAVDGILLDLGVSSPQLDNPERGFSFMLQGPLDMRMDLTQSIN
                     AANFVNEAEVNELAHVFRVYGEERFAGRIAKAIVDARKLKPITTTLQLAEIVKEANPK
                     WEKHKHPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAVISFHSLEDRIVKQ
                     FMRDKEQGNRPPVEVPIKYEELKTNFKKVGKAVKPQSSEIKENVRSRSAVLRIGEKLA
                     "
     gene            complement(20930..21388)
                     /gene="mraZ"
                     /locus_tag="JBH85_02000"
     CDS             complement(20930..21388)
                     /gene="mraZ"
                     /locus_tag="JBH85_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HAU0944958.1"
                     /translation="MFRGINAITIDTKGRLAIPTRYRSALGAEDKIPLVVTIDTEETC
                     LLLYTAAQWQIIEDNLQKLPSFNAAARRIQRLLIGHATDVEVDANGRVLLPTVLRNYA
                     KLEKDVVMIGQGNKFEVWNKELWESKREQWLAEEASMTDGLPEEMKTFSL"
     gene            complement(21601..21714)
                     /locus_tag="JBH85_02005"
     CDS             complement(21601..21714)
                     /locus_tag="JBH85_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944959.1"
                     /translation="MLRCKCFCDAYLLWQTPLIKTSVLSLKQNNQMMQERQ"
     gene            complement(21766..22536)
                     /locus_tag="JBH85_02010"
     CDS             complement(21766..22536)
                     /locus_tag="JBH85_02010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HAU0944960.1"
                     /translation="MILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKS
                     VLRENNCSPETIRKIAICSVVPQVDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNP
                     VEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCAISHKKAYLGGAILPGLRLSADA
                     LSKNTAKLPSVEIIKTESVVGRSTIESIQSGVYYGVLGACKELIERIHHEAFNGDQIL
                     ILATGGFASLFDKQGLYDHLVPDLVLQGIRLAAMMNTA"
     gene            complement(22807..23364)
                     /locus_tag="JBH85_02015"
     CDS             complement(22807..23364)
                     /locus_tag="JBH85_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAU0944961.1"
                     /translation="MKKQILLVPVCVLAASCASMDRSTAVVDDAGYTHYTMSMESDRK
                     GSNYFPEKRQATGKKVFIFDPKATAWAAYDAQGNRVKTGSASGGKDFCEDVGRPCRTV
                     TGSFRVYSKKGEECTSSIYPIETGGGAKMPYCMHFHGGYSIHAAYEVPNYNASHGCIR
                     VLPSAAKWLNQNFIDVGTSVIVKPY"
     gene            complement(23441..23848)
                     /locus_tag="JBH85_02020"
     CDS             complement(23441..23848)
                     /locus_tag="JBH85_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
                     /protein_id="HAU0944962.1"
                     /translation="MRPCYFVCILALFMFAMPGYSENHHPQEFLRSIAGTKDEGEKIF
                     NHFCVNCHGMKPMISLGAPEIGNERAWGVRLKQGMEVLFKHTDEGFNAMPPRGGCFEC
                     TDKQLILAIIAMVPKQAQKGLLNNLLDHKEYKQ"
     gene            23935..24636
                     /gene="flgA"
                     /locus_tag="JBH85_02025"
     CDS             23935..24636
                     /gene="flgA"
                     /locus_tag="JBH85_02025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HAU0944963.1"
                     /translation="MKKCILSFFLFFASTSLFSESSQSLELLKNKIEQYALNELSNYT
                     EGKIQVTADNIDPRLNLKVCDDNKLEVFNPYQTPMLNTSTMGIKCLEENNHWTLYIPV
                     KITIFKSVLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDSKELIGLVCKHDITP
                     NSPLNPFNIELAKLVHKGEQVSIIAAHDNLTVSMDGIAMDEGALGDSVKVKNLSSKRI
                     IEAQVTGKKTVKVTF"
     gene            24727..25047
                     /gene="flgM"
                     /locus_tag="JBH85_02030"
     CDS             24727..25047
                     /gene="flgM"
                     /locus_tag="JBH85_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HAU0944964.1"
                     /translation="MINTIEDIHMVNQINDSANLRHIDMDNRINAKHKEAKSPVLENN
                     SADSVNLSSTSKQLEALKASLKDLPEINEARVLYFKAEIQSGQYEIDSSKIAHGMLNS
                     VEMV"
     gene            25064..25561
                     /locus_tag="JBH85_02035"
     CDS             25064..25561
                     /locus_tag="JBH85_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HAU0944965.1"
                     /translation="MNNNNKAKTLITQLEQEINWVEELNTLLSEEKEILSTSQFNQLE
                     TLAEKKQELSTKLEASAKQRVDLIKESNPGDKPHGLLLSDFLKNCATEDGIQINHLNN
                     TLAEKLNLCRELNTINGQVIANNMYTRQQIVNALSGNKSDAVSVYTSNGNLETPSESS
                     HHEEA"
     gene            complement(25624..26367)
                     /locus_tag="JBH85_02040"
     CDS             complement(25624..26367)
                     /locus_tag="JBH85_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0944966.1"
                     /translation="MNFDNQIALVTGGVSGMGKACVQYLQQHGMKVVVWDKQEGTSNE
                     AELYVACDVTSDESVEKAMRQTISQVGVPRVCINCAGIAPAKRMVGKEGPMPLESFRQ
                     VIDVNLIGTFNVMRIAAHAMSGLELDNKSQERGVIINTASIAAFEGQIGQSAYSASKG
                     GIVSMTLPAARELAQFAIRVNTIAPGLIATPLLLNMPQEVQDSLVATVTFPKRLGRPE
                     EFASLVGHIIENQMINGEVIRLDAALRMR"
     gene            complement(26577..27122)
                     /locus_tag="JBH85_02045"
     CDS             complement(26577..27122)
                     /locus_tag="JBH85_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HAU0944967.1"
                     /translation="MLLNRADSLLVLIDVQEKLTPAILNLDLFLARCEWLLKLARKLD
                     VPVLASEQYPKGLGRTVSPLSSYINQEECIEKIHFSCMQEPQYINLLKGYNKNQLILI
                     GIEAHVCVLQTAIEMKGYGFDVFVVVDGVSSRSEFDLKYGLKRMKQNGIHLITAEMVL
                     FEWLKQAGTPEFKAISKEFLQ"
     gene            complement(27242..28333)
                     /locus_tag="JBH85_02050"
     CDS             complement(27242..28333)
                     /locus_tag="JBH85_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HAU0944968.1"
                     /translation="MEMMRQQRNLLLIPFILCFILARPVFSLNLDALLPDERNTVEVF
                     QKASSKVVYVHRLANATVQRRYSLQKTHVPDGAGSGIIWDNKGHVVTNFHVINGADDI
                     AITLGNMTVPAKVIGSEPRKDIAVLEIKSPKALDYLKSFQPFEIVSLNDLIVGQKAIA
                     IGNPFGLDHSLSKGVISALGRKVPGIGGVTIYDMIQTDTPINPGNSGGPLLNSAGQLI
                     GMNTMIYSRSGSSAGIGFAVPAEDIQKIASQIINHGRVVLSGIGIQRVEPHLAERLGV
                     KKGILIADVVPGTPADKLKLRGTHRNQWGRIVLGDVIVGVNAHPVPNYDALYNLLTEI
                     KVGEQITVSIIRNGKKMDVKMKTIDIAAL"
     gene            complement(28308..28646)
                     /locus_tag="JBH85_02055"
     CDS             complement(28308..28646)
                     /locus_tag="JBH85_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944969.1"
                     /translation="MVYIKRDKDGRICAVYSQKTSDVTEQIDINDAEFVDFLLRCESN
                     EKLKFLQSDLQLIRVLEDLIDVLIDKNIITITDFPQSVIDKLLARQAFRKRFASRAGM
                     ELNGDDETTT"
     gene            complement(28624..28806)
                     /locus_tag="JBH85_02060"
     CDS             complement(28624..28806)
                     /locus_tag="JBH85_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944970.1"
                     /translation="MLVLYDIPGIIHESLLSGFGLTINMEGLSLETADIRFMCLFFLN
                     IVLAKKGLNSGLHKTR"
     gene            complement(28862..29764)
                     /locus_tag="JBH85_02065"
     CDS             complement(28862..29764)
                     /locus_tag="JBH85_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944971.1"
                     /translation="MTMEPVTIALICAASFGAVVALSAFIRQLLLSRDKNLNDEAQRK
                     AINQEAGELEKMREQMQSNKRFDSHYKVLGANKDAIIYLDNKIEDILRKKAHLVERYA
                     QVSLKESGAIVEGGNSTERKDACDRLKKEIDEEIKFYDSELLHLQQRRTSLWDTHTDL
                     QEYLLGQEKSRNESLDHLYKQHTALLEKIYIRHTDDSENIAKQSIDAGTTSFKAIILA
                     PIQFLLQYFNISSGINFDQSKLENAARDDVDKTESDINDSENSDDEIYSDTDANSDDE
                     SNRSDNEDSRDESDSENDSRLIFA"
     gene            complement(29769..30425)
                     /locus_tag="JBH85_02070"
     CDS             complement(29769..30425)
                     /locus_tag="JBH85_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944972.1"
                     /translation="MHQRQSEIVVLKPTNLFLSFLASQLPEANLPSLKLLHTDNTAYV
                     IPKHDSDDGTLNEIEKHFTTMFRHEICRWLGHSAHNEIETSFLDFLCCFKFELHSHII
                     LMEPSLKEGHQMLNIKPRSALLEWMKCAVEDQEGLSDVMSRVNLAQIAENSTVIVKNF
                     TTIKDVKPFIKQYFKPIFETTMSRISGQSVQWPQVNSFQSFSRYFAVEIHTQLIHLHY
                     "
     gene            30812..>31037
                     /locus_tag="JBH85_02075"
     CDS             30812..>31037
                     /locus_tag="JBH85_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HAU0944973.1"
                     /translation="MVFKLWFYPMKLLGKILLAFTALMIFVSITLWILATNIKPETIK
                     QLVSNKITAITHKQSQIDGTISWQLFPRPGL"
BASE COUNT         9609 a         6582 c         5253 g         9593 t
ORIGIN      
        1 taaaattagt ccaatcttga ttatttataa acatcctttt cacgtccctc tatcgttgta
       61 atcgataagg cattcgttat tattcttgga gtaataaaaa tcagtaattc ctcatttttc
      121 aatgtgattt gtctattact aaataaaata ccgacaacag gcaactcacc aaagaaagga
      181 attctattga ttaccttgtt cttatcttgc ttataaatac ccccaagtac tatggtttgt
      241 ccattattaa ccagaacatt cgtctgaatc tcctttgtta ttattgctgg aacaccaagg
      301 aatgtttgtg gggaaggagt atcctgattt atctgtaaat ccatcaaaat tttaccatca
      361 ggcgtaattt gtggggtaac tttcaaactc aataccgctt ttttaaatgc aacagcagtc
      421 gctccacttg atgttgcctc ctgatagggt atctcctcac cagactctat gactgctgcc
      481 tgttgattcg tagtaatcag gcgaggactg gatattaatt cagcacgccc ttcgctttcc
      541 aaagcagaca attccagatc aagcagaatg ttatcattaa gtttagctag cgcaatacct
      601 accgaggctg gtgtagctcc agttaaagga gcagctgcca aatcaagatt taaccttctt
      661 tccaagggga caacattggc tggtgctgtg cctctcgcta actcgttagc accttccagt
      721 gtaccactta agtgggttgg tcttgatacc ccccagcgta tcccaatatc ctggctaaaa
      781 tctttagtta cttcaacaat tcttgcctca ataagcactt gcttaacagg gatatccaat
      841 tgctttatca gttcccttac ttcctcaatt ttggtgccag tatcctgaat ccagattgta
      901 ttcgttctgg catcaacact tatttttcct ctgtctgata atagggaatt ttgcttatcc
      961 ttgatcaaaa cagcaatatc tgctgccttt gcataattaa tctgtattaa atcagaacgg
     1021 ataggctcaa gtttttcaat tgtctgttga cttttgagtt gttcttcctc cattttatcc
     1081 atggaggcct tggtatctat caacatgacg ttgccttttc tgcgcttatc tagcccttgt
     1141 gtggttaaaa tgatatccag agcctgatcc caggggatat catttaatct aagcgtaata
     1201 tctccttgta ctttgtcgct gacaaccata ttgattccag taaaatctgc cagcaattga
     1261 agtacagccc gaatactaat attctggaaa ttcaaagaaa tacgtttacc ggtaaatacc
     1321 tgtttcttta atttcgcctg acgaatttct tccgcagtta aaggaaagac atcaaccata
     1381 aattgtttat tgacctgata cacaaaatgt ccataatccc ctttgctgag aatggtcatg
     1441 cgaaccttct tgccttcctg ttgcatcgta ataatctgca cagggctgtg aaaatcagaa
     1501 acatcatacc gtttcattaa attcaaaggg atcttggtat tcaggaaatt aacgactatt
     1561 tctttcccaa cttgagttac atcaattgga atacccgtat cagaaacgtc aattaagact
     1621 ctaccaccct gcttttctat accacgaaaa tcaattcttt taatttcgtg cttggcgttc
     1681 acaacctggt tcgttatgaa tacctccttg ctattttcaa ataaatcatt gcttttacca
     1741 ttcaggacaa ggctataaat ggaacccgcc gtgctgccag aataggatac tgaacgatcc
     1801 agttccaata tggctcttac tctatcacca acagcaacaa tgttataact gtgtaatgag
     1861 cctaattgaa tagttttagt tttctgatcc gaaggaattt gcatatcagt gctgataaaa
     1921 tctaacacca aacggggcgg cttttgagta ataaagcttg caggcaactg ctttaagggc
     1981 ttggaaaatt gaaaatcaat acgcactctg ttttcgggca atggcaatac ttttactgaa
     2041 atgagcgaat tatctttaga atatgccata ctcaaactgg cactaattaa tatcaaaatc
     2101 gcgataattt ttctcacgcc tcactcctgc ttgccagtat ccaaattaat tgtggtggac
     2161 tgtttttccc acgttcctga tttctgtaca gtttcttcca atttaatgag atcattttta
     2221 atcaaaataa tacgtccata attttgtccc atgtaatctc caaccctaac acggctaatc
     2281 tgaccgtcag gttgtttaat cagagcccag atttcattgt ctttttttaa agtacctaca
     2341 aattttaaag catccagagg aaaagattcc aaaggctgct taggcctttt tttatctggg
     2401 gcataaatat catttctctt tttttgatca ataggcttga atggatttcg cctattgtcg
     2461 ttttctggaa atctaaaaat tggcaaaggg gcgaatttgg gaataggctc gataggtctt
     2521 cctggtcttg atttcacttc gttgatgtac ttaacaaggt cactgttatc accagagcag
     2581 gcactaagta atagaaccaa taacgctgtg aataggcttt ttcggaaatt ctctgaggtg
     2641 agtaaagtgc gcagagaatt tccgaaaaag cctaatataa gaagagtctg gttattttta
     2701 attatcattg tgcccgatat ctgtatattt tcgcagtgat agccatcacc aattcatcct
     2761 gagagaccgt tttaccatct ccggatgaca ccccctcaac actaaattca tgcaaagtca
     2821 ctattctgtt catttcagct acacgactta aaaatcttgc caattgcata taggatccga
     2881 caatcgtaat ttttataggt aactccacat aaaaatcatg cactacttca ggttgtggtg
     2941 caaacaattc aaatttcaaa cccgatgcaa tccccgtttt agatatttcc tccaaaagcc
     3001 ctggcatttc atttttcgcc gggagttgtt ttagcatagt cccaaagcgt tcattcatta
     3061 actgtaactg attacgataa gcttgtagat ttgctgcctg atgttgcttt ttttcaaact
     3121 ctgttttcaa agcaatttcc tgggcttcct gtatttccaa ttgctcaaaa ttgggcttaa
     3181 caataagcca ataccctaat ccaattatca gtatactgat acctaaaatg actccgattt
     3241 taaccggcat tggccactgc ccgacattct ccagagttaa ttcacttaaa ttgaccgtgt
     3301 ccatgatttt tatcagccta atatttgggt ttaagcacaa aacttaattt aaattcattg
     3361 tttggagact gttttttttc aacatttttt ttaatttcag ttagaacagg gttctgtatc
     3421 cagacattag cctctatatt tctcatcaaa atagaaatac ttgtattcga ttcggaatac
     3481 ccccagagtg ttactacatc gtgttctctt tgcatcttgg ttatgtaaac tcctggagga
     3541 gtaattttta ttaattcatc aaataagtga accattaaag ttcttgttga ctgcagattc
     3601 tgcacaatcg acattcttga aatcaaacct tccctgattt gttttaatgc tttaatctcc
     3661 ttgatctgtt catctaaagc tgtaatttct ttttgtaaaa tctgatttcg gttcatttga
     3721 ttacttatta aatgagaaac ataagagttc attaaaaaaa caattgctgc agcgatgata
     3781 attcctatca atagcatggt tgtaaataat ttcttttcct gctcacgttt ttgttcacgc
     3841 catggcaata aattaatttc agtcattttt tactcgacat gcctcaaagc caacccacaa
     3901 gccaccatca gtgtaggcgc atcactgtta atcacatcca aattcacttt tttaccaaaa
     3961 gacatatggg atagtggatt tgccactgta gtagtcactc ctaactgttc ttgaataagc
     4021 gctgccaatc ctgattgcct tgccattcct cccgccaata aaatatggtc tacaaatcca
     4081 tgttgactgg ttgaataaaa aaactgcaaa gtacgtttga tctgcaaaag aatcatgtcc
     4141 ttaaaaggtt ctaatacagc agattcgtag tcctccggta gtttaccctg attttttagg
     4201 gcaatagcct gctccaaatt catatgatag tgttctgcaa tagcttcaac aagttgcata
     4261 cctccaaatt tttcttctct tgaaaagatt agtcgcatac catgcaaaac aaataagtga
     4321 gtataattgg ctccaatatc tactattgca acaattttgt cttgcccact tgctggtaat
     4381 tcttgcgcga tttgttgtac tgaacgctct actgcataag actcaacgtc aacaactttg
     4441 ggttccagcc ctgctctatg ggctgcttca acacgggtat taacgttttc tgcccttgat
     4501 gccacgatta aaacatcaag cagtgatgag ctcttggctg aatggcctaa cacttcaaaa
     4561 tccaggttta tttcatctat tgggtaagga atgtacttat ccgcctcaat aacgacaagc
     4621 tcttccattt caaggtcagt taacccttca ttaatttgca ctactttact gataacagcc
     4681 gaatcaggta cagccaatgc cacattttta gatgtaaact tcaatctttc tactaatttt
     4741 ttgatacaat tcgctactac atcgacatcc ttaattatat ttccttctaa ggcagaggca
     4801 ggtatttctt cgcgaccata tccttcaaca caaatgtcct ctccggaacc tgatatttcc
     4861 aggattttca ctgcggaaga actgatgtca atgccaagaa ttgaacgatg cttaggttta
     4921 agcaatttga gcacttatat aatctccctg tatatttcct tgcagcccaa aagcactcct
     4981 atttttagat cttttcctaa ctattgaata attaatgtta gcgtaagcca ctataaattg
     5041 gaatcacttt acttattact tggggttaag cgtttataat caatctgaaa attgatccat
     5101 gcatttccat ttctgccttc tgtcgatgcc caagaaaatt tcatgatatc aatcatagta
     5161 tacaatcaaa tcagatttta tattctttca aaaaactgta aaacaacccc tctacttgta
     5221 tgtttttttc aaataatgta ccagttaata ggcacttgca cttatgcaaa acattcaata
     5281 tagtgaaata ccaagttgta ggggatttcc acatttagat ttttagcttt ataaaaagga
     5341 gctttacata tgactagatt agaagagcta ctctatacat tgacttctgt aatcattcgg
     5401 tatcatgaca gccagcctaa agtattaaat aaattaatag ttgaaagcaa tcccattctc
     5461 ttaagaagaa aagcacttgc tttggctaaa gaaattattc aggataaaga cggtgaatgt
     5521 aagggacgcc ttgaagagtt aatacaaaat tgcaccaaag gctatcccga cagaaaacca
     5581 ttcttatatt ttattttaaa tgaagtgctt tttctaaaat ccatgctgga taggaaaagc
     5641 tcatttgaac catctaaact ggaagagtat aaaaaacaga tcgctcagct tttaattgat
     5701 cttaaacaat taatgatcac ccctaaaagt aaaacttatg aagtaaaata tacttctgcc
     5761 accgagagcg ctgaaaccag catttctctt tctggcgtaa aaaatgatgg atacgttggt
     5821 ggagaatttt gcaactccgg aaatttgatc aaagaagaag ttttagaagc attgaacatc
     5881 catattaatt ctaaaaatac agcagaatgt tcttctgatg aagaaattaa agcgcttgct
     5941 gaatctttat gcttagagca tcaaaacgct ctattggtac ctgaactaat ggagaaagcc
     6001 caaatattga gtgtcagtag caaagagcaa gaaaaagaac tcttaacaaa aacacaacaa
     6061 gcagaaaaag ataaaaatac aatttcagag caagaagcta ctattctgga gaaagacaaa
     6121 gaaatagaaa aactgaaaga gaaagtaagc gagctaactc gcagcatgcc ccgtccagtt
     6181 ttcaaccctg tcctacctct tggatacagc tctctgtttt tcaataccaa gctgggcact
     6241 caagccaaac aacaaacaac aatgattgat gtaagcgatt taccaatggt taaatcctct
     6301 gaaacaacag atacccagcc taatcaatct ttttctatga gtaatggcca tggggattaa
     6361 tgcctattgg cgcttcatca atgattatct ccatagctgt gaggcgcaaa atagcattta
     6421 aatcaggttt ttttcccttg taaacctcgc aatattatat agattcgctg tataatattg
     6481 cactactcac atttaacgaa aacgaaattc tatgaaaaaa atggcatact tctggcgtaa
     6541 aggtctttgg gcgctgatga gcctgttttt tctcctaata gtagctggca gccttctata
     6601 cctttatctc gaaagccaat tgcctaatgt tgattcatta aaaactgtac aattacaagt
     6661 gccattacag attttcagca aagaaggttt attaattcag gaatacggtg aaaaaaaacg
     6721 tattcccgta acctatgacg aaattccccc tactctgatc catgcattaa ttgcaacaga
     6781 agatcaacga ttttttgagc accctggtgt agacgttatg ggattgggcc gagccgcagt
     6841 aagcatgctc aaaactggaa ccaaatctca aggtggcagt acgatcacca tgcaagtagc
     6901 tcgtaatttt ttcttaagcc gtaaaaaaac atttttacgg aaattcaatg aaattatgct
     6961 tgctatcaaa attgaccggg aattaagtaa agaaaagatt ttggaacttt acttaaacag
     7021 ggtttatctg ggtaatcggg cttacggtgt tggtgcggca gccatggttt attttggaaa
     7081 atcccttaaa gaccttaatc tggctgaact ggctatgata gcaggacttc ctcaagcgcc
     7141 ctcaactcag aatcctatcg ctaacccgct tgctgcaaaa aaacgtcgtg accatgtact
     7201 ggagcgatta ctggaagaac attatatcaa tgaagaacaa taccaaaatg ctgtcaatca
     7261 accaattact gcaaaatacc atggaactaa tatcaaggtg aaagcgcctt atgttgctga
     7321 aatgattcgt cagtctctgt acgacaattt tggccccgaa gcgtacacta aaggctataa
     7381 ggtatataca accattgacg gcaaattaca aaatactgcc aatgaagtgg tagaaaaaaa
     7441 tctgattgat tatgatcatc gacatggtta cagagggcca attgccaata taggtgaaaa
     7501 agacagtcaa tctcccaaga ttaggcaaaa atacttgcgg caatatccag agcttaacag
     7561 cctgattcca gcagtggtca ctgaagtaag agaaaaagaa gcgactgcgg cattacaaaa
     7621 tgggcaaata attattattc cctgggaggg tatgtcctgg gccaggccgg cactgaagag
     7681 aggaggctgg gttgggaaat caccaaccaa agcacaacaa gtggtagcag caggcgatat
     7741 aatctatgta caccccacgg aaaaatcctg gcaactcgcc caaattcctg aagcagaatc
     7801 tgcaatggtt gctatgaatc ctaaaaatgg cgccattgaa gttttggtcg gaggatttaa
     7861 cttctcaaaa agtaaattca accgagctac ccaatccagc agacaaccag gctccagttt
     7921 caaaccattt gtttacgctg cggctttgaa caatggttat aatcttgcta ccttaattaa
     7981 tgatgccccc atcgttgtag acgatcccag ccaaccgaat ttatggcggc cacacaatgt
     8041 gaatctaaaa ttcaatggcc ctacccgcct gaaacaggca ttagttcaat ctaaaaattt
     8101 ggtatctata agaattcttg atgatatagg tattgattat acgatagatt tcttaactcg
     8161 ttttggcttt aataaaaaat cattgcctag agccttatca cttgctttag gaagtttatc
     8221 cattagccct atggatttaa ccactgctta tgcagtcttt gctaatggtg gctataaagt
     8281 agagccctac ctcattgacc atataacaga tgctgatggt aaaattctgt tacaagccaa
     8341 accaagtgtt gtatgtgacc cttgtgataa agacaaagtt gatgcctcta ccttggcacc
     8401 gcgcgttatt tctgaagaca ttgccttttt aatgaatacg gcattacgcg atgtaataca
     8461 gcatggcact ggacgtgctg cacgagtatt aaatcgtcaa gacatcgctg gtaaaacagg
     8521 gactactaat gatcaagtag atgcgtggtt tgccggattt aactctaatt tggtagtaac
     8581 aacctggatt ggttttgata atcccaaatc attgcatgaa tatgctgcaa atcttgctct
     8641 tccactatgg attgatttta tgaaagtagc attaaaagac aaacctgaaa ctgaattgaa
     8701 gcagcctgaa aatgttatag ctgttcgaat agatccagta agtggtttgc tcgccaagcc
     8761 taaccaggaa aatggcatca ttgagtattt tcgacaaaat gaggttccat ctgaagagga
     8821 tcaaggtcct gtctataatg cacataatga tcagcaggaa gaagaactag cgccagtgga
     8881 agaaagtctg ttttaattta agatttatat tctgatgaag caaaaaaccc gtattcaatt
     8941 tgtgtaatac gggttttaat ctactaatta tcgtcctgat aaagcagctg cagctggcgt
     9001 gtattcatat cctaaatcac gagcaacagc ctcataagtg attttaccct ggtgaacatt
     9061 tagaccatta agtaaatgcg gatcacttaa taaagccagc ttaacacctt tggtaacaat
     9121 acttaaaatg aagggtaatg tggcattatt taaagcaaat gttgatgttc tgggtacagc
     9181 accaggcata ttggccacac aataatgcac tacgttatcg accatgtaag taggttcttg
     9241 atgggttgtc gcacgacttg tctcaaaaca ccccccttga tcaatagcaa catcgactaa
     9301 aacggagcca ggacgcattg agctcagcat agagcgagtc actagtttgg gggctgcagc
     9361 acctggtacc aatacagcac caatcactaa atcagcgctg gatacgtatt tttctatgga
     9421 atctgcagtt gagtaaactg tattgagttt agaaccaaac tgaaaatcca attcatttaa
     9481 acgttgcagt gaacgatcca gcacaataac acgagcttcc atccccatcg ccatgcgaac
     9541 agcatttgtt cctacaactc caccgccaat gaccacgaca ttggctgcag caacaccagg
     9601 tacaccacct agcaatatac cgctaccccc ttgagccatc tccaagcaat gtgcaccagc
     9661 ctggattgcc atacgaccag ccacttggga catgggagta agtaaaggta acccgccatc
     9721 atcctgtgtc acagtttcat aagctattgc tgtaacccca gattctttta ataaacgcgc
     9781 ttggtgagga tcaggagcta aatgtaaata agtgaataat gtttgccctt cacgtaaccg
     9841 tttacattca ataggctggg gctcttttac tttgactatt aattcggcat tggcaaatac
     9901 gtcatcagca gtatcaacca cttcagcccc ggcatttctg taatcatcat ccgatatgcc
     9961 gataccaagc ccagctccct tctctaccaa tacatcactt cctgccctaa taatttctct
    10021 aacactcgag ggaacaagtc ctactctgtt ttcgtgcgat ttgatttctt ttggtacccc
    10081 tactaacata ttgttacctc ttatcgattc tttaattgtt ctattaattg tggaattaat
    10141 tcaaacagat cacctactaa cccataagtc gcaatttgaa aaataggtgc atctgcgtct
    10201 ttattaattg caacaataac cttggaatcc ttcatacctg ccaaatgttg aactgctcca
    10261 gaaataccca cggcaatata aagcatagga gccactacct tcccggtttg acctacctga
    10321 taatcattag gaacaaaacc ggcatcaact gcagctctgg atgcccctac tgctgcgccc
    10381 aaagtatcag ctaactcttc gattaattta aatttttctg cattttgtag ccctctaccg
    10441 ccagaaacaa ctattttggc actacctaaa tccggcctct cggatttact taattcatgg
    10501 cgcacaaatt gacttccttt agcttgaaat tccttatcaa tactttctat gcaacatact
    10561 tcctggcttg atgtgatggg atcaaaagct gtcgttctaa tagtcattac ttttaatgaa
    10621 tccaaaacac gcacagtctc tatagcatta ccagcataaa caggatgttc aaatgtgtct
    10681 gaattaatta tcttgctcac atcagaaatc tgggtcacat caagttgtgc agcaactctg
    10741 ggcaatatat ttttcccata agtactggaa ggagctaaaa tagcactgaa tgaattcgca
    10801 aaagacacca ccaaatcgct aactgcttca gccaattgat gttcgtaaca aggattatct
    10861 acatgcaaaa cagcatgaac tccttccaga ctggctgcct cctcggctac tgaacggcat
    10921 tgatatccaa ccactagtaa tgtaatttta tcaccgagct ctaaagcagc agacagtgta
    10981 ttgcgggttg ctggatgtaa ctgctgatta ttatgttcaa ctaaaactaa agtgctcatc
    11041 tcatctcctt aattaaagca ctttggcttc atgttgtaat ttatccaaca atgcagccac
    11101 agaatcaagt atgacaccag cacttctggt tgccggggca ttaaccttta atatttcaac
    11161 gtgttgttta agagataagc caagcgaatc cagatcaatg atatcaagag gctttcgttt
    11221 ggccttcata atattcggca agctggcata tctgggctca tttaaacgaa gatcggtact
    11281 gattactgca ggcagctgta ccttgagtgt ttccaaacca ccatcaattt ctctcaccac
    11341 ttcaagatta ttattatcgg gaatgatctt cgacgcattg gtagcctgtg gccaattcaa
    11401 taatgcagcc aacatttgag gggtttggtt attgtcacca tctatcgatt gtttgcccat
    11461 caaaaccaaa tccggttttt cattagctac gatactattt aatatcttgg ctatattaag
    11521 gctctcgaat gatttttctg ttcgaaccag aatggcctta tctgcaccca aagctaaagc
    11581 gtgccttaaa gtttcctgag agctatccga accaatgctt acagcaataa cctccgttgc
    11641 ccaatttttt tctcgcaaac gcaatgcctc ttcaatggct atttcatcaa atggattcat
    11701 cgccattttg atattttgag tttcaactcc tgaattatcc gatttcactc gaattttgac
    11761 ataagggtca atcacacgtt ttacagccac gagtattttc atggttcctc actggaatat
    11821 caaatcagtc tgcatcttgc cagagatagg ggtataaatt caaggggttg attttaatta
    11881 gaacataaag ctaatttatt ctaaatgagc tatgttaaag aaagcctttt tctattctca
    11941 cctacctaat aatctggtcc gggttggaaa actcaactca tgcaaaaaga aaaaacatag
    12001 ggcaaaataa tgtccttaag tacaatcagc attacaaaca atggtggtat tttttcattt
    12061 ccgcgcaggc aggaagctat ttttataaca aactgaaaag caaaatttgc aatagcttca
    12121 cgaattggaa caaatcatac acataattca ttatttaacc aatgcgttat tttgtcctga
    12181 gaataagcat gagatacttg caacagctat taagttccat tataaaccac caattgcata
    12241 gaatcctggt cttgtagcag agagataact tgttctgctt cttttacggc ttttgctgta
    12301 ttgcttgtaa aaaccttggt atccttcttt atcttatcca gttctttttg agcttctacc
    12361 aatttctcct ccaaaggact aggaagagaa tccaatactc tcatcttgaa taaaaatgcc
    12421 tctactttta aacgcttctc tcgacctatc ctcaagtcac caaaaaattg ctgcgcgttt
    12481 aaaccaagat aagattcaag aggagcagaa atgactttta attctggtgt cttgaattgc
    12541 attccctcgc tagtattatg gctagccaag attaaatctc tacataaatt ggtagctgta
    12601 tcagactctg atttttcctt agtctcagga gagggtaaca taggttttaa aatcgcagaa
    12661 ccgatttgta aactcacatc aagaaattgg cgcgaagccc aaaaagtcat ttcaagcagg
    12721 cgaactaata gagtagttga tgcagttgca gtaataatac tgatttcttg caacgtgcag
    12781 cctatttttt ttagttgact ggattcagtg ctctccaggt actgccctcc tttcaataaa
    12841 ataaaataga gcgcatagat agcaaacaat tcttctgcaa aaagaaaagt gccatagctg
    12901 gcaaatacta ctggaataaa tcgaagtaaa actctgagtc ctctaggttt tattttgcca
    12961 gtatcatcaa aaaaaccact ggattgttct aataaattaa ttaaactgtc acaaaagctc
    13021 tggccagaat aggtagttgc cttggatctt aaattttcca gccattgttt aaaatcatcc
    13081 ttgcttttga tatctcctaa actactatct ttgaattttt caggtgaaat taatttctca
    13141 taacacaagc caagtatctt gaagcatgct ccattattct tgctctgaga taaattattc
    13201 tctagccaaa ccatttctgg cgaaaatcct gaagcatgat cgggatgaaa acagagagtt
    13261 agccttttat agtttttaac aattttttct ttttctggcc catctatcaa taattgctgg
    13321 ttaataaatc ttgcaaaatc tctttctaat ctcaataagg tatccttatc taaatgggat
    13381 ttataacaat tattagttgt gtcccattcc gcatacaatc ttacaaaatt ttttaattcc
    13441 ttttctatag tcataattac tcccttaata aacttgacta cgatttatag agtctaattt
    13501 atcttattga gatagtggtt cctttgcaaa tactgtgtaa ataagccaac aagcaacata
    13561 ctgatataaa atccagtcat aacatcactt aaataatgat gatataaaat aaccctggta
    13621 gcagcgacaa gcaaggctgc tccgataaag aggaaaaaat atcttggaaa gagaaacccc
    13681 aatcccgcag ccaaagcagt tatagtaata gaatgccctg aagggaatga ccaataattg
    13741 tcattgagtt gaaaccaata aaacccatag aggttattat caaacaagag atccggccgc
    13801 gcgcgactaa ggctaatttt taatgcaaaa gtcaatagat taggcagcaa aacacagccc
    13861 aataaatacc aggatctaat ttcatattgt ttattttgct gaatgtatcg aaagtataat
    13921 gcggtgatta aaaacaatgc aacataaatc ttccattttc ccaaagccgt caagtatgtt
    13981 aatacatgag cattgactcg aagatccagg ctatggaaat aagtagccaa cgttctatcc
    14041 aaaaaataat aagaaagaac aacaaggata atataggtta ttattaccca gatttttttc
    14101 atgaagttaa aagttttctc aaattgcgtc atcgaaacca agccttataa atcctcatat
    14161 caaatggaat catataagat gctttcgatt tagccaagac cccatgttat taataaaaat
    14221 tagggcctat cgagatttct cgcgcttgag tagaaaatca aggttttttg gcaaggatgg
    14281 taaaaatatc aacaaatgcg agcggtcaca caatttttca tcaacccttg ttattagcga
    14341 gtagaattcg ttaaaatcag gatccttatt aaatacatca gaatattaat gccagaattc
    14401 acgttaatcc aacaaatttg tatttgggct ttaccagtat tattagctat tacttttcat
    14461 gagttagctc atggttacgt tgcctaccgc tgcggtgaca acacagctaa aatgttcggt
    14521 cgattatcat taaaccctat caaacacatt gacccaatag gcactgttct attgcctctt
    14581 ttaattggcg tgataacaaa cttcaatttc gtaattggct acgcaaaacc ggttccggtt
    14641 aaccagagcc aactgcgaaa accacgccga gatatgatat tggtaacact tgcgggacca
    14701 ttggcaaatc tgataatggc attcctatgg gctggatgtt ttaaaatagc aacgctgtta
    14761 agccctcaaa gctcaatgac tgctttattc ctgcttgtta cagccagagc gggaatgatg
    14821 atcaatttga ttcttgcctt tttaaaccta atccccattc ctccacttga tggcagcaaa
    14881 gttgtaataa atctattgcc agcaagacaa gctatcgctt atgcaaaatt agaaccattt
    14941 ggttttttaa tattgattgt actaattttt actaatgtat tgggatatat tcttactccc
    15001 ctcatctatg gttcattata tattttaagc gcgattttta atttatgaac attttagcag
    15061 atgctttatt gccaggatta gatagtgctt ttccaccacc atttaccgta accttgtatc
    15121 ataaggccga tgaaattcca gaattgcttc accataagga cgttcttctt tgtcgttcaa
    15181 ccctaaaaat caatggcgat ttactaaaaa accatcaaat aaaggttgtt gcgacagcaa
    15241 ccagtggaac cgatcatatt gattttcctt ttttagaatc acaaaacata tctattattg
    15301 atgccaaagg atgcaatgcc atatcagttg ctgactatgt tgttgcttgc cttgcctatt
    15361 tagataaaca gcaacttatt caaggtaaaa cagcaggaat tattggctta gggcaagtag
    15421 gcactaaagt ttatgaacga ctaaatgctg ccgaatttca gttatgcctt tatgacccac
    15481 ccaaagcaac cagagatact tcttttcaaa gctgctctct tgaagatctt tttgaatgtg
    15541 acttcttatg tgttcatgct gaattacata gcaatgcgcc ctacccaagc cttaatttaa
    15601 ttaatcggga ttttctcaag gaattaaaac ctggctgcat tatcatcaat gcttctcgag
    15661 gaggtatcgt taatgaagaa gcccttttgc atcttggctc tgccatactt tattgcaccg
    15721 acgtctacaa taacgaacct catatagata accgggttgt ctccaaggca actctttgca
    15781 caccacatat tgcaggacac agcctcgaag ccaaatttgc tgcagtcgca atcgtcagtc
    15841 gtaaattaca tcaaatgctt ggtcttccat acccacaatt tgcaacccct gaaaaacctt
    15901 atagattaaa tgaagacagc aactggagag agctggcttt atcaatatat aacccgattc
    15961 atgaaacact agagttaaaa cacgctggaa atctatcctc agcattcttg actcttcgca
    16021 agaatcatca tcaccgccat gatttcacaa cttattttga ttctgattca ataaaaaagt
    16081 atccattatt aggttaaggt gttgatgtct gtttctaata attaacccct gtcccgaaat
    16141 tttaattatt catcaaacgt cttacaactt cctgatcaga aaaaacatgt tttgtattcc
    16201 caatctgctg atacgattca tgtccttttc ctgctattaa tatgatatcg ttatgttcag
    16261 cctttcttaa agcataagca attgcttctt ctctattcac cagtttagag acaggcgcag
    16321 aggcaggaat gccacaagca atttcattta gaataatttc cggatcttca cttcttggat
    16381 tatcgctggt aatgacaata ttatcagcgt acatgctggc tgcctttccc ataatgggcc
    16441 gtttggtttt atctctgtcc ccaccacaac caaatacaac ccacaatctc ccttttttta
    16501 tttgttttaa ggtgataaga acattttcca atgcatcggg agtatgagca taatcaacaa
    16561 gaacatatgg ggattgagca acaatttcca ttcggccagg agccgctttt aattcagcca
    16621 taatttgcac tactttttct ggattatacc cgctggcaag caaactgcta taaacagcca
    16681 ggctattata aatattaaac ttacccagtg ctttaatctt tagaaggtgg tgcccccaag
    16741 gagatttaac ttcaatttct gttccggtga tatccatatt ccattggatc gctttcacat
    16801 cgcaattttg atgcataccg taagtcactt tttttacatg agtctttagc acattgctca
    16861 tgagatcttg aaagtcgtca tcctgattaa taatagccca ttgcaactct gctcgttcaa
    16921 acaacctcga ctttgcagcc ccataagctt gcattgtctg gtgataatct aaatgatcga
    16981 gcgttaaatt ggtaaagata gcctgactaa attcgagaga gtcgactcta tgctgactca
    17041 acgcatgaga ggatacctcc atacaaacct gtttaatgcc cccttcttta tactgatgca
    17101 tcaacctctg caaacaaaga gcatctggcg tagtattttc caaaggtttt aaggaatcca
    17161 ccctgccttg ccctatagtc ccaatgtaag ccgagtgctg cccgagtaaa tcatgtgcct
    17221 gtgccaactg ataagcaata gtcgtcttgc catttgtgcc agttacccca gttaaaccaa
    17281 gaaattggga tgggttatta aaaaaccgtt tcgctatttc tcctaatttt tcagctaatt
    17341 ggggaatggc tatgcaggga attgctgttg gcaaagtaat tccctgaggt aaattattgg
    17401 gctcataaac cacagcgaca gcacctgatg ccacagcttt ttctatatat aatcgaccat
    17461 cggaagctgc ccctggatag gctgcaaata aatccccttc tttcaccaaa cgactgtcat
    17521 tttttatgtc actaacagtg ccatcaataa tgtccctttt aatccacggt tctaataatt
    17581 ggcttagttt cacaaaattg gctcctattc tctttaacta actggctcat cagtaggaat
    17641 attgaataag cgtaaagcac ctgacatgac tttcgcaaat aagggtcctg ccacagaggc
    17701 agcataataa ccctttcgtg aaggttcatg aataataaca gcgactacaa attttggttt
    17761 ggaaactggt gctatcccaa taaaactggc tgtgtatttc ctgtctttat atccattctt
    17821 tccagcaact cgtgctgttc cagtttttcc agctacccta taaccaggaa cccttgctcc
    17881 cttacctgta cccttattca ttaccgcttc catcattaat aatacatttt cagcggtttt
    17941 aggctgcatc acttgaatgc cattacttgg ggtatcattg tgaatcaaag tcacaggtat
    18001 taatcgtcct ttatttgcaa aaattaaatt ggctttagcc aattgcagtg cagtaacaga
    18061 caagccataa ccgaaaccta atgtggctaa aacgaatggg tttgcatcct tggcttttac
    18121 tatgcctcct tcactttcac ccgggtatgc caactcagag cgttgcccaa aaccacattt
    18181 ttgcaaaaac ccgattaatt gctcagctgg agtagataat accatttttg taacacccac
    18241 attactggaa tgttgtaata ttccggtaac atctaaaaca ccataattat ggatatctct
    18301 tactgttcgg ccatgaacag tcatccatcc tggattagta tcaataatgg tatccggagt
    18361 aaataagcct gtttccaaag cactggcgat actgaatgat ttaatgacag acccaggctc
    18421 gaaagtatcg gtgaaggctc tgttgcggta ggtttcctta tcataatgcc cacgtgcgtt
    18481 aggattataa gatggaacat tagccacagc caggatctca ccattttcag catcgattac
    18541 aactacagac ccggattttg cagaaaactc ttcgactgtt ttacctaatt cgctataagc
    18601 taaatattgt agtcgtctat ctatactcaa agttaactca tgccccgggc gtggttcctt
    18661 caaaactccc agatcttcga caactcgtcc taatcgatct ttgattactc tttttttacc
    18721 aacgactccc ataagccaat cttgataggc cagctcaatc ccctccaatc cttgatcatc
    18781 gacattggta aatccaatta atggggaaat actatccgaa tctggataat aacgtttgaa
    18841 ttctttttga aaattaacac ctgggatttt taaagcttcg atctttttcg aaaggggtgg
    18901 aggtaactgt ctttgtaaat aaacaaactc ccgattttca gcccggacaa tttttctact
    18961 taattcttta ggtgccaaat tcaggtattt agctaactgc ataaattgtt cttcatccgg
    19021 agaaaattcc tttggattga cccaaaccga ttcaacaggc gtgctcacag caagcggagt
    19081 accatttcta tcggtgatca tacctcgata ggcaggaata tctataactc ggatgctgcg
    19141 cgcatcaccc tggccctgca aaaattgtct atgcagaaca gtcagatcaa ccattctcca
    19201 tatcaaaaca gccaaaatca aagagaaaaa aacagcgaca gtaaccagcc tggcaaaatg
    19261 gtgtgttttt ttcatatatg actactcata aatagtatta actatgcacg caacaataaa
    19321 ttagtgaaaa tatacttgaa gcctcttcct caaaattacc ttagagttaa acataaggca
    19381 catatacctg cctggaattt atcaggctat tttacactta gtcctccatg acgtcctgga
    19441 aagaagatga atgacgtgta agtgtacatg aagctttcaa ttttttcgag gtgatttcct
    19501 ccacaatgca cctaattgct tgctcaaatc cattgaaatt gcattattca agcttgcatt
    19561 taatgctctt ggacatagat tatccttaac caagcgctca gttcttacct ataactcaaa
    19621 atatggaaac actttaactc ctccaaaacg gctcacttat tgaggatgca gtaagtacgt
    19681 atttgctgaa gttggtaaag tcattcccaa tttttctctg gctaattcct caactcgggc
    19741 tggagttgcc aaactggcct gttccaataa taattgtccc cattgcaatt gtaaaaaatg
    19801 ggtttgctgt tcctcttgtt gcacttgact gagagttaat ctgtaggaat tagtgctata
    19861 tatgacagca aaagcactga ctagtacggc agctaacaat actatcaaca tatagagtga
    19921 ttttgacatt tgcatatctg ccaattgacc attaaataaa ttaccttgat taatgacttt
    19981 cgctgcagcg ttcatgctaa tttctcccct atcctaagta ctgcacttcg agatctaaca
    20041 ttttccttta tttcgctact ctgtggtttc actgctttac ctactttttt aaaattggtc
    20101 tttagttctt cgtatttgat tggaacttca acaggcggcc tgttaccttg ctctttatct
    20161 ctcataaatt gtttgactat tcggtcttcc aaagagtgga aactgataac ggccaaacgt
    20221 cctcctggcc ccaacacgtc cagacattgc tctagacaat tactcaaatc ggttaattcc
    20281 tgattgacat gtattcgaat cgcttgaaat acccgggttg caggatgttt gtgtttttcc
    20341 catttggggt ttgcttcttt aacaatttcc gctaattgca aagtggttgt tattggtttt
    20401 agttttcttg catcaacaat agcttttgca atcctgcctg caaatcgttc ctcaccataa
    20461 accctgaata catgagccag ctcgttgact tctgcttcgt tgacaaaatt cgcggcatta
    20521 attgattgag ttaaatccat tcgcatatcg agaggacctt gcagcataaa actaaagcct
    20581 ctttctggat tgtctaactg aggtgaagac acgcccagat caagcaaaat accatcaacg
    20641 gctccaagta ctcctgcttg tgatgcgaat tccttgatat gcgcgaatga accgtgaaaa
    20701 atttgaaatc gtttatccaa accaaaataa tccttggcat attgaaccgc atcgaggtcc
    20761 ttatctattg caaatagtct tcctttatcg cttaaatgat ttaatatctc gcggctgtgg
    20821 cctcctcggc caaaagttcc atcaaaatag ataccatcag cttttatagc caaacctttg
    20881 attgattcat gtaataaaac agattgatgc tttgccattt ctctttccgt tataaagaaa
    20941 acgttttcat ttcctcgggt aacccatccg tcatggacgc ttcttctgcc agccattgct
    21001 cacgcttgga ttcccataat tctttattcc aaacctcaaa tttatttccc tggcctatca
    21061 tcacgacatc tttttccaac tttgcataat ttcttaaaac tgtgggtaaa agtactcgtc
    21121 cattcgcatc aacctccaca tcagtggcgt gcccgattaa cagacgttga attcgtcttg
    21181 ccgcagcatt aaaacttggt agcttttgca aattgtcttc aataatttgc cattgtgctg
    21241 ctgtgtaaag gagtaagcag gtttcttcgg tatcaatggt caccacgaga gggattttat
    21301 cctctgcacc caaggcactt ctgtaacgcg tcggaatagc taagcgccct ttagtgtcta
    21361 tggtgatggc attaattcca cgaaacatat tatttcccaa gtgaaggaga attattctcc
    21421 cacaattctc cactttttta ttattttaac ccacttttct acactatagg aacacatttc
    21481 tacacacgtc aagctgaaat accacttttg gagtaatttt tttatggatt aaagaggcaa
    21541 atcccaaaac tgccatttat ttgatcttta agaaaaatta ataaccacgt gtgcacacaa
    21601 ttattgcctc tcttgcatca tctggttatt ttgcttgaga gacagtactg atgttttgat
    21661 gagcggggtt tgccagagta aataagcatc acagaaacat ttgcaacgca gcaataaaat
    21721 gaaagaggca gattttgcaa gtgagcggtt gagaatttgt ttggctcagg cagtattcat
    21781 catagcagcc aatcttatcc cctggagaac caaatctggc acaagatggt cataaagacc
    21841 ttgcttatca aataaagatg caaatcctcc tgttgccaaa attagtattt gatcgccatt
    21901 gaacgcttca tgatgtattc tttcaattaa ttctttacat gcaccaagga caccgtagta
    21961 gactccagat tgaatgcttt ctatggtaga acgcccaact acactctcgg tcttgataat
    22021 ttcaacagaa ggtaactttg cagtattttt tgacaaagca tcagcagata atctaagacc
    22081 aggtaaaata gctccaccta aataagcttt tttatgagaa atggcacaaa aagtagttgc
    22141 tgtaccaaaa tcaataacaa taatgttttg attgggaaaa ctatgagtag cagcaatagc
    22201 atttgcaatt cggtcagctc caacctcaac cggatttcta tatttgatat tcaatccagt
    22261 cttaactcct gcctgtaata aaaacgggtc aattgaaaaa tacttcacac aggctgaccg
    22321 caatgaataa tctacttgag gtactactga acaaatagca atttttctaa ttgtctcagg
    22381 agagcaattg ttttcacgta aaacactttt aagaaagatg cccaattcat ccgaagtact
    22441 taccttagaa gtatgacgaa accggagttt aatctcatct ccatcaaata ctccaccata
    22501 tatatgagag tttcctacat cgatacacag aatcattatt aaatctactt tttaaatggc
    22561 ataattagtg acttgtgatt ataggtctaa gacaataatt cagcaatccc gcaaagaaat
    22621 agccttgtat tgagagcatt ctatgtatta ttgattcaaa ttattgttga atccgctttc
    22681 atccaaccca aactttagct ggacttctta cacaaaacca ttgtcttttt gccaaaataa
    22741 gataataaaa tcacccaata aaaaaacccc gcaattagcg gggagtagtg gagaatctta
    22801 acttaattaa taaggtttaa cgattaccga agttcctaca tcaataaagt tttgatttaa
    22861 ccattttgca gcacttggta aaacccggat acagccgtga cttgcgttat agttgggaac
    22921 ttcataggca gcatgtattg aataaccacc atgaaaatgc atgcaataag gcatttttgc
    22981 tccaccgcca gtttctattg gatagatact ggaggtacat tcctcgcctt tcttggaata
    23041 aactctaaaa ctgcctgtta ctgtccgaca gggtctgcca acgtcctcac aaaaatcttt
    23101 tccccctgaa gcactaccgg ttttaactcg gttaccctgg gcatcgtaag ctgcccaggc
    23161 cgtagcttta ggatcaaaaa taaatacttt ttttcctgtg gcctgtcttt tctcaggaaa
    23221 gtaattagaa ccctttctat cggactccat actcatagtg taatgggtat aacccgcatc
    23281 atcgactacg gctgttgatc tatccatgga tgcacaagag gcagccaaga cacaaactgg
    23341 aactaacagt atttgctttt tcactttcta tctccctctt tctcttttca actatatcgg
    23401 gagcagtttg aataagttta ggctttttta taaaattttt ttactgtttg tattctttgt
    23461 gatctaatag attgtttaat agtccttttt gagcctgttt gggaaccatc gcaatgatag
    23521 ctagaatcag ctgtttatca gtacattcaa agcatcctcc tctgggaggc atggcattaa
    23581 acccttcatc ggtgtgttta aaaagcactt ccattccttg tttcaatctt accccccatg
    23641 ctctttcatt tccaatttca ggggctccta aagaaatcat tggtttcatt ccatggcaat
    23701 taacacaaaa atgattaaaa attttttccc cttcatcttt tgtgccagca attgacctca
    23761 gaaactcttg aggatgatga ttctcagagt accctggcat cgcaaacata aataaagcca
    23821 atatacaaac aaaataacaa ggtctcatga tatactccta aaattggcgc aatacttgct
    23881 tgggacacag tgcgtttcaa tataaaaaat cattagacta agggagttta tgtcgtgaaa
    23941 aagtgcatac taagcttttt cttatttttt gcaagcacca gtttattctc agaatcaagt
    24001 cagtctctcg aattattaaa aaataaaata gaacaatacg ccctcaatga attatcaaac
    24061 tatactgaag gtaaaattca ggttacggcg gataatattg atcctcgcct aaacttaaaa
    24121 gtttgtgatg ataataaact tgaagtattc aacccttatc aaacacccat gctcaatacc
    24181 agtaccatgg gaatcaaatg tttggaggaa aacaatcact ggaccttata tatacctgtc
    24241 aaaataacta tatttaaatc tgtacttgtg gcaaaacgag ctttactgaa aggtacaaaa
    24301 attagtaatt cagatatata tcaaactgag cttgatgttc aaaaattgaa acaaggatat
    24361 tttactgaca gtaaagagct tattggattg gtttgcaagc atgatatcac acctaatagc
    24421 ccacttaacc ctttcaatat tgaattagcc aaactggtcc ataaaggaga acaggtatct
    24481 ataatagccg ctcatgacaa cttaacagtg agcatggatg gaattgcaat ggatgagggg
    24541 gcgctaggag actctgtaaa agtaaaaaat ctttcctcaa aacgaattat tgaagctcaa
    24601 gtcacaggaa agaaaaccgt gaaagttact ttttaactaa tgttttaatt tttaagaaaa
    24661 aatttgggaa aaagattaaa aatcaacctt aatttactaa agaaattgca aaaggagccg
    24721 ataatcatga taaatacgat tgaggatatt catatggtta accaaattaa tgactctgcc
    24781 aatttaaggc atatcgatat ggacaatcgt atcaatgcaa aacacaaaga ggccaaaagc
    24841 cccgttctgg aaaataactc tgctgatagc gtcaatttaa gtagtacatc gaagcaactg
    24901 gaagctttaa aagcatctct taaagattta cctgaaatta atgaggcacg tgtattgtat
    24961 ttcaaagctg aaattcaatc cgggcagtat gaaattgata gcagcaagat tgcacatggc
    25021 atgttaaata gtgtagagat ggtttaaact gcgggacgac tcgatgaata ataacaataa
    25081 agcaaaaaca ttaataaccc aattagaaca ggaaataaac tgggtagaag aactcaatac
    25141 tttattatct gaagaaaaag agatactttc taccagtcaa ttcaatcagc tagagacatt
    25201 agccgagaaa aaacaggaat tatcaactaa attagaggct agtgcaaaac aacgtgtaga
    25261 tcttataaaa gaatcaaatc ccggcgacaa acctcatgga ctcctgttgt ctgattttct
    25321 caaaaattgc gctacagaag atggcattca aatcaatcat ttaaataaca ctcttgcaga
    25381 gaaattaaac ctatgtcgtg agttaaatac cattaatggt caagtcatag cgaataacat
    25441 gtatacccgt caacaaattg tcaacgcctt gtcgggaaat aaatctgatg ctgtgagtgt
    25501 ttacacttct aacgggaatt tggaaacccc ttccgaaagc agtcaccatg aagaagcata
    25561 agaaatataa cccctggtat tttttaaaat agctctccag tatgatacgc caggcatagc
    25621 cactcaacgc atacggagag ccgcatccaa acgaattacc tctccattaa tcatctggtt
    25681 ttcaataata tgacctacta gtgaagcaaa ttcctctggt ctacccaggc gtttgggaaa
    25741 agtcactgtt gcaaccaaac tgtcctgaac ttcttgaggc atatttaaaa gtaaaggagt
    25801 tgctattaaa cctggagcaa ttgtatttac tcttattgca aattgagcta attcacgtgc
    25861 tgctggcaag gtcattgata ctattccacc ctttgaggca ctataagcag actgtcctat
    25921 ttgtccttca aaagcagcaa tggaagctgt attgattatg acaccccgct cctgagattt
    25981 attgtccaac tccaatcctg acatggcatg tgcagctatt cgcatgacat tgaaggtacc
    26041 tattaaattg acatctatta cttgtctaaa tgattccaaa ggcattggcc cttcttttcc
    26101 taccatgcgt tttgccggag caattcccgc acaattgata caaacccttg gtactcctac
    26161 ctgagagata gtttgtcgca ttgccttttc aacagattca tcactggtta catcacaagc
    26221 aacatacagt tccgcttcat ttgaggtgcc ttcctgttta tcccagacca caactttcat
    26281 gccatgctgt tgtaaatatt gtacacaagc cttacccata cctgagacac caccagttac
    26341 cagtgcaatc tgattatcga aattcatttt ctctccaaaa ttctacagtt tcaatttcca
    26401 actttcttat tccacttaaa aacagtattc tattagacct cttgccaaac ctgcttattt
    26461 ttttaaggca aagcgcaaaa ccgctttgag gaaggaagct tacatacagt aaatcagtac
    26521 cgcagaaacg tttgcaacac agcaataaaa ggaaataatc aggccatgca aatagcctat
    26581 tgtaaaaatt ctttgctaat cgctttaaat tctggcgtac ctgcttgttt taaccactcg
    26641 aacagtacca tttcagcagt tatcaaatgg atcccattct gtttcatcct ttttagaccg
    26701 tattttaaat caaactcaga gcggctgctc acaccatcca caacaacaaa gacatcgaat
    26761 ccatagcctt tcatttctat ggccgtttga agtacacata catgagcctc aattccgata
    26821 agaataagct ggtttttatt atatcctttc aggaggttaa tatattgtgg ttcttgcatg
    26881 catgagaaat gaattttttc aatgcattct tcttgattaa tataagagct taaaggagaa
    26941 acggttcgac ctaaaccttt agggtattgt tcactggcta gaacaggcac gtccagtttt
    27001 ctggctaatt ttagtaacca ttcacatcga gccaaaaaaa gatcgagatt taatattgcc
    27061 ggggttagtt tttcctgtac atcaatcaag accaaaagag aatccgctct atttagtaac
    27121 atcctgatag cctcattcta tttattgaac tatatcatat agcattaaga aaagtgagtg
    27181 aaccccggat tgatgcatta ttcttttccg ggggaataat agttagaaaa aatgaagaga
    27241 gttaaagcgc tgcaatatca attgttttca ttttgacatc cattttctta ccattcctta
    27301 ttattgaaac agtaatttgc tctcccacct taatttccgt gagcaaatta tacagagcat
    27361 cataatttgg gacaggatgt gcattcacac ctacaataac atcccctaaa acaatacgcc
    27421 cccattgatt tctgtgagta cctcgcaact tcaatttgtc tgcaggagtt ccaggcacca
    27481 catcagcaat caaaataccc tttttaactc ccagcctttc agcaagatgt ggctcaactc
    27541 gttgaatacc gataccagac aataccactc gaccatgatt aataatttga gatgcaattt
    27601 tctgaatatc ttccgcggga actgcgaaac caatacctgc agaagaacct gatcgtgaat
    27661 aaatcatggt gttcatacca attaattggc ctgcgctatt taatagaggc ccccctgaat
    27721 tacccgggtt gataggggta tccgtctgga tcatatcata aattgttacc ccgcctatac
    27781 cagggacttt tctccctaaa gcggagatca ccccttttga tagactatga tctaacccaa
    27841 aaggattccc aatcgcaatc gctttttgcc caacgatcag atcattaaga gagactattt
    27901 caaagggctg aaatgatttc aaataatcca gagccttggg tgatttaatt tcaaggactg
    27961 caatgtcctt gcgaggctct gaaccaatca ctttggcagg gacagtcata tttcccaaag
    28021 taattgctat gtcatcagca ccgttaatga catgaaagtt ggttacaaca tggcctttgt
    28081 tatcccaaat aataccggag cctgccccat caggaacatg tgttttttgt aatgagtaac
    28141 gacgctgaac agtagcattt gccaatcgat gaacataaac aactttggat gaggcttttt
    28201 gaaatacttc aactgtattt cgttcatctg gaaggagagc atccaggttt aaactaaaaa
    28261 caggccttgc cagaataaaa cataaaataa aagggataag taataagtta cgttgttgtc
    28321 tcatcatctc catttaactc catacctgca cggcttgcaa atctcttgcg aaatgcctgt
    28381 cgcgctaata atttatcaat tactgattgt ggaaaatctg taatagtaat gatattttta
    28441 tctattaaaa catcaatcaa atcttcaagc acacgaatca attgcaaatc ggattgcaga
    28501 aattttaatt tttcgttgct ctcacaacgc aacaaaaaat caacaaattc tgcatcatta
    28561 atgtcaattt gctccgttac atctgaggtc ttctggctat atacggcaca aatccgacca
    28621 tccttatctc gttttatgta gaccactgtt taatcctttt ttagctaata ctatgtttag
    28681 aaaaaacaga cacataaatc ttatgtctgc tgtctctaaa ctcaaacctt ccatgttaat
    28741 ggtaagccca aacccagaca aaagactttc atgaattatt ccaggaatat cataaagtac
    28801 aagcattgta ttgtaatata tcctttcata gatgtcacca attaactcaa aagattaatt
    28861 tttatgcaaa aataagtctt gaatcatttt cagaatcaga ctcatcccga gagtcttcat
    28921 tatctgaacg attagactca tcgtcagaat tagcatcggt atcgctataa atctcatcat
    28981 cgctattctc agaatcattg atatcgcttt cagttttatc aacatcatct cgcgcagcat
    29041 tctccaattt ggattggtca aaattaatac ctgatgaaat attaaaatat tgcaacaaga
    29101 attgtatagg cgccaaaata atcgccttaa atgaggtggt tcctgcatca atgctttgtt
    29161 ttgcaatatt ttcactgtca tcagtatgcc gaatatatat tttttctaaa agtgctgtat
    29221 gttgcttgta gagatgatcc agactctcat tgcgagactt ttcctgaccc aacaaatatt
    29281 cttgtaaatc cgtatgagta tcccacaatg aagttcgcct ttgttgcagg tgcagcaatt
    29341 cactatcata gaattttatt tcttcatcta tctccttctt taacctgtca caggcatcct
    29401 ttctttctgt cgagttccca ccctcaacta tggcccctga ttccttgaga gatacttgtg
    29461 cataacgctc cactaagtga gcttttttac gtaaaatatc ctcaatttta ttatccaggt
    29521 agataatcgc atctttattc gcgccaagca ctttataatg agaatcaaat cgtttattgc
    29581 tttgcatctg ctctctcatt ttctcgagtt caccggcctc ctgatttatt gcttttctct
    29641 gtgcttcatc atttaaattt ttatctctac ttaataatag ctgtctgata aatgcggata
    29701 atgctacaac tgctccaaac gacgccgcac agatgagggc tatagtcact ggttccatag
    29761 tcaactcctt aatagtgcaa atgtatcaat tgggtgtgta tttcaacagc aaaataccga
    29821 ctgaaagatt gaaatgaatt gacttgtggc cattgtactg attgaccgct tatccggctc
    29881 atagtcgttt caaatattgg cttaaaatac tgttttataa atggctttac atctttgata
    29941 gttgtgaagt ttttaacaat aaccgttgag ttttctgcta tctgagccaa attcacccga
    30001 ctcataacat cagaaaggcc ttcttgatct tcaacagcac atttcatcca ctctaaaagc
    30061 gctgaacgag gcttgatatt caacatctgg tgaccttctt ttaaagaagg ttccattaaa
    30121 ataatatgag aatgtaactc aaatttaaaa caacacagaa aatctagaaa acttgtttca
    30181 atttcattat gtgcagaatg ccccaaccaa cgacaaattt catgtctgaa cattgtggta
    30241 aaatgctttt cgatctcgtt aagagtacca tcgtcagaat catgcttggg aataacataa
    30301 gccgtattgt cagtatgcaa taattttaag ctgggtaaat tagcttccgg taattgtgac
    30361 gctagaaagg ataaaaataa attagtaggc ttcaacacta ctatctcaga ttgtctttga
    30421 tgcatgaggc tctccttgat ttaattaact cctcctgatt acatctcaac tattaaaatc
    30481 aacgtctcat ctcaatttag aatcttagtc actatcttga ctaatacaga gttttattca
    30541 caaatgcgca tgaagtcaca cttgactttc aaagacttaa aaattccctg atattgttaa
    30601 atttagaacc aagattaagt acatcaacca aaattctggt aatacattaa ctcaaaagtc
    30661 caaaaaaaaa tctctcttat tcagtctaat ttgcatatat gatagtttca atagttaaac
    30721 agaatttttt tgagaatatt tttccaattt gttagaatag acacctatag tcttaaatcc
    30781 ttcttgacag aaactccttt atctatatgc tttggttttt aaactctggt tctatcccat
    30841 gaaattgcta ggaaaaattc tactcgcttt tactgcttta atgatctttg tatcaatcac
    30901 tttatggatt ttagcaacaa atattaaacc cgaaaccatt aagcaattgg ttagtaataa
    30961 aatcacagcg atcactcata agcaaagcca aattgatggg actatttcct ggcaattgtt
    31021 cccaaggcct gggctca
//
LOCUS       DACVWI010000012        30760 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.012, whole genome shotgun sequence.
ACCESSION   DACVWI010000012 DACVWI010000000
VERSION     DACVWI010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 30760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30760
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.012"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            253..921
                     /locus_tag="JBH85_02080"
     CDS             253..921
                     /locus_tag="JBH85_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HAU0944974.1"
                     /translation="MCGRFAYIASYDKLKYQFHLANAIEIPPRFNISPGADVVCLVET
                     VGHEIQCVLLRWGLIPSWTTDRKKLGNLINARAETVFEKPTFRQSIKSKRCLIPMSGF
                     YEWRQEDGVKQPYFFQKKNHDLLAVAAIRDIWQQNEEVIHSCCLITTDANAFMQPVHN
                     RMPVILGEEAQAIWLNNTQCDKAQLMALMKPYPYEDLEGYRVTTLVNKANFDHPLAME
                     PLSE"
     gene            1057..1563
                     /gene="umuD"
                     /locus_tag="JBH85_02085"
     CDS             1057..1563
                     /gene="umuD"
                     /locus_tag="JBH85_02085"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HAU0944975.1"
                     /translation="MSPRGGKREGAGRPRGEPTKAVRIPLSQLAKLERLKSHESYQLP
                     VFASKIQAGFPSPADDYIEGYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLV
                     DRSIEPSDGRIVIAAVNGELTVKRLSKKGGRVQLLPANPKFQPIDITEDSEMVIWGVV
                     TLVLHELA"
     gene            1550..2827
                     /locus_tag="JBH85_02090"
     CDS             1550..2827
                     /locus_tag="JBH85_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HAU0944976.1"
                     /translation="MSLPEMFALIDCNNFYASCERLFRPDLKDVPIVVLSNNDGCCIA
                     RSNEAKALGIAMGEPYFKIKHLCKQHSVKAFSSNYTLYGNMSHRVMCTIEEAWPHIEI
                     YSIDEAFLDLRSLPVNSHDLFCEQLQKKILKHTGIPTSIGIGPTKTLAKAANHLCKKV
                     YKIPVFNITSNRERLLQQISVGDIWGVGRQWANKLISRGIHTAYDLAMTNPHLLKKCF
                     NVVLMRTAMELQGIACSGLEAIEPKQSIMSSKSFGQMQTQLASIEESISSHCARAVEK
                     MRRQQLVAKRLVVFVHTNRFREDLAQHFQSIEFNLINPTDDLRLITKIAKRCLQRIFK
                     PRYYYKKAGVCLEDLIPKSPRQLDMFHQPSDEHLNHTEQLMAVFDQINQKYGRSTIRL
                     AAEGFSKPWAMRAELKSPAYTTRWSEVPLVHLF"
     gene            3062..3301
                     /locus_tag="JBH85_02095"
     CDS             3062..3301
                     /locus_tag="JBH85_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAU0944977.1"
                     /translation="MFHVFGAISEFERNLIKERTLDGLEAARAIGRQGGRPEKLTDEQ
                     KELVKTLYANKKHSIQSICKMVGVGKTTLYKYINR"
     gene            3321..3878
                     /locus_tag="JBH85_02100"
     CDS             3321..3878
                     /locus_tag="JBH85_02100"
                     /inference="COORDINATES: protein motif:HMM:PF10987.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2806 domain-containing protein"
                     /protein_id="HAU0944978.1"
                     /translation="MDIKLSSETLNLLIEKLSKAIGWYCEPKQIRRLAKADAEAKLIS
                     TNSDIKSQELYDAYEKRKIHQGIKDEKNISNIILKCLISMKEATKADDVDDDWLRFFF
                     EKAKMVSDEQMQDIWANLLSGELEKPGSFSKRTINLVELLDKSDAKLFTSLCSFGVYH
                     GGSLYPLIIDYQNQVYIEKGLNCHC"
     gene            3985..5007
                     /locus_tag="JBH85_02105"
     CDS             3985..5007
                     /locus_tag="JBH85_02105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HAU0944979.1"
                     /translation="MIHILYKQGYSKKAIARKLGMSINTVRKYLKSGSEPYYKRRDKK
                     PLKLDPYKAYIQKRLKDATPHWVPATVIYREIKSFGYDGCSSQLRAYMHTLRSRNEEV
                     IVRFETEPGQQMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLETLIACHKH
                     AFEYFGGVPYTILYDNMKTVIIERNGYGPSQHRFQAGFWDFAKHTGFRPKVCQPYRAQ
                     TKGKVERFIHYLKYSFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGA
                     IPFERLLDEQATLQPLSSTYSGKLFSHSENKEIHYFSFQLLDNTAMQHDLSIYQKLLE
                     RTEEAA"
     gene            5004..5798
                     /locus_tag="JBH85_02110"
     CDS             5004..5798
                     /locus_tag="JBH85_02110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAU0944980.1"
                     /translation="MNIQHERILSLCERLNLSAIATNYSYLAQEAATHNQGFSDFLES
                     VLTVELQEKQYRSRTLLTKMAGFPMIKTIDDFDFKFASGVPKNKIRELTSLAFIERQE
                     NILLLGPSGLGKTHLAIALGYLAVQANIKTKFISAADLMLLLETAHRQGRYKDIMRRV
                     INNARLLIIDEIGYLPMNRDQANHFFQVIANRYEKGSIIATSNLAFGQWDNTFAGDKV
                     LTAAMLDRLLHHAHVIQCRGDSYRLKDKFKAGLIQNQKEEQNNITD"
     gene            5894..6157
                     /locus_tag="JBH85_02115"
     CDS             5894..6157
                     /locus_tag="JBH85_02115"
                     /inference="COORDINATES: protein motif:HMM:PF10987.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944981.1"
                     /translation="MGLINFDSIVHFSINIDGEKSYFSYFGDVILFKFNKKTNNEVSI
                     GKVMLTEPGRQLSKICGATKIEGYVDRIIDHLKGMPNVEVENK"
     gene            complement(6488..7186)
                     /locus_tag="JBH85_02120"
     CDS             complement(6488..7186)
                     /locus_tag="JBH85_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944982.1"
                     /translation="MNKCWLCGDIATTREHRIKKTTVNYLFLYEKNPTITVGKKIKKL
                     QSPNSGLIKYDYNLCQKCNCERTQPFDRAYEKFFEYLIQNQKSILKNRRVKVADLEID
                     QQNLFKYFIKSFCCMVDSSHTKPVPKELIDTLLGADYNKSLVIQFCINMATINYPLTK
                     VMMTGESMFFPYTNDEFYMSYYEAYGWLNIRYIYQTVWDKREYNFRLNKNNLVPNYWV
                     GKSKYIFFSIIPSV"
     gene            7880..8731
                     /locus_tag="JBH85_02125"
     CDS             7880..8731
                     /locus_tag="JBH85_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011314142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HAU0944983.1"
                     /translation="MLAISPAHEIGAYEYLFDEVVSSYKQLSDLMKEKKVNFASELVN
                     SSLTKKYIDQVWNIISKQPIDINVFVRGTMDYLDKLYDAEYSLPLLYYQGNLNYLHTK
                     GVAVVGTRNPSPLGVKRTQKLVKLLLEQDITIISGLASGIDTVAHSTAIENEGRTIAV
                     IGTPITSFYPFANKNLQLEIAKNHLLISQVPIIRYSKGNPKLNRFNFPERNKTMSAIS
                     DATIIVEASNTSGTLTQAKAALKQGRKLFILNNNFEDSTLNWPAKFEKLGAIRVSDFS
                     QIVDALK"
     gene            8728..9369
                     /locus_tag="JBH85_02130"
     CDS             8728..9369
                     /locus_tag="JBH85_02130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944984.1"
                     /translation="MTNLLVIDEFDIARHRRNLTIQDRCYFYFTYNGKADYINNPTRS
                     MIKNLKRSPSELKGNPTFTYFKNKEIDNVSKLIYETIIEQPQFLDYIWIPVAPSKEKS
                     DPEYDDRLIQILLKVQKMLPKFRFLEIFSTKISTPPSHQTNKRDITEKIQNLEIDNYL
                     ISQLGNNPILIFDDMITSGATFCAYKRILNQNNCFAVEGFFLCKATSDIIDLD"
     gene            complement(9913..10479)
                     /locus_tag="JBH85_02135"
     CDS             complement(9913..10479)
                     /locus_tag="JBH85_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAU0944985.1"
                     /translation="MSSSGKTIGYVRVSSFDQNPDRQLEGIILDKKFIDHISGKSIKR
                     PQLEKLLDYVRDGDEVVVHSMDRLARNLDDLRQLVKSLTQRDVTLRFIKENLVFKGDD
                     SPMSNLLLSIMGAFAEFERALIRERQLEGIAIAKQKGKYRGRKPSLNKEQAAILQERA
                     KAGERKTSLAKEFGISRETLYQYLKNNQ"
     gene            complement(10708..11139)
                     /locus_tag="JBH85_02140"
     CDS             complement(10708..11139)
                     /locus_tag="JBH85_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944986.1"
                     /translation="MSHIPLSNYGTSPFEKLLGYVPEILNNWSNLENAFLQSKTFEPN
                     FLEQIRRALVFDNLCYYYIAKAEPPDQLPEDILLTAALKFANKFAIDHKIINEQDIDE
                     LKQCFLTNEISELISYCSFITASQRFGSVLGLQPAFKYDQK"
     gene            complement(11368..11892)
                     /locus_tag="JBH85_02145"
     CDS             complement(11368..11892)
                     /locus_tag="JBH85_02145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944987.1"
                     /translation="MSLNQLHIILFGMLISQFVLADVPVEVIGSCKNSRAVNASVTYT
                     KIIPPAGVDDSPGCTNHIESTEGSFNYGAITCNHENYLILKSDRINLNTAQNHSVNPS
                     ITPGNRITQLSDWSKIVFDNNEYLCIDVELSESGEGADVSQYYIVENAFNTSTPVLHF
                     YFFNKDIMPMTDAN"
     gene            complement(11883..12173)
                     /locus_tag="JBH85_02150"
     CDS             complement(11883..12173)
                     /locus_tag="JBH85_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944988.1"
                     /translation="MNALDPEGVDYANGGCFWDGNDLVTKGAKHRHYRKGYKFTDPTH
                     DVLSVGDSAPANLTGKFGTYNYTFESTAGYGQTVFWKLTQEFLTAQRGKQCH"
     gene            13440..13973
                     /locus_tag="JBH85_02155"
     CDS             13440..13973
                     /locus_tag="JBH85_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0944989.1"
                     /translation="MTSLIEFKKQAKILRDFLGQKNHDITHSSCLEAIAIMNGFKNWN
                     TMSGIFAKNGNALEKRSKTWICDTCGGLIQKPEEGWVEWIVSVPKNEAYGLRLAHRAG
                     YGSNGSSCQYNEELVYKQYGGIINDGELSWYLGDGGLMLLLTLLEEQQIPQDQVLEMI
                     KRLHIPEYEHARRHFNE"
     gene            15017..15880
                     /locus_tag="JBH85_02160"
     CDS             15017..15880
                     /locus_tag="JBH85_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HAU0944990.1"
                     /translation="MKSYQEFCALNARRLFAIIEKHGGLLQWKKEWSGEGLNALPQGI
                     NGIYRGGNLFSLFFAQMEKGFKSNQWLTFNQIKKGGGQVLNGSKAEEIYFWSLKDQIE
                     LNQKTNESEKKSSFIFKTYYVFNLEQTTLFKKEGGQNEQFQCNQLLNYIKPSISHFGN
                     HAFYTPVNDTIVLPHREQFTDKAAYEATLLHELTHWTGVEYRLNRESLKAYGTEKGRA
                     EEELVAEFGAFFLCAFFKIKSDIENHASYVNSWKTLLNEKEIMRATNMAAKAFHYLVE
                     PLQKEQAQIAA"
     gene            complement(16086..19019)
                     /locus_tag="JBH85_02165"
     CDS             complement(16086..19019)
                     /locus_tag="JBH85_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
                     /protein_id="HAU0944991.1"
                     /translation="MTAKEQFLTNQQRYQPLILPQRFSDEEMVRDWTLSRRDCEVVNK
                     YRKQYRLGFAIQLCAMRLYGRFLNQLHDLSPRVISYLSSQLDLPPTLTVEVPEREATV
                     LEHRNNILKYLGFHRFDDKVEADLDRWIEEHAQQGLLPDELFHRAERHLLLKRIVLPG
                     PTTIERQIIRICNQVHAQLFEQVFDQMSPELRDAIDDLLQATDGNQRTYFNQLKEYPP
                     GAKISSLKRYLERYDNLVSTGINEFEEKVIDTAFLNYLYRLTKRYSAKDMKRFKDHKR
                     YALMVCFLLESRKILLDHLVKMHDQYMTELCRQTKNSHDKKHKEFRKRQKKAIDAVLE
                     TTHVLLEWPDEQPLYKKDLWQRIDEKHLLASIDDLHIFKRLEERGYCDLLLARYPSLR
                     KYFADFIRLPFEVAKGSGPLIKAIEFVRKLDDGDLKKLPENTPTAFIPRELRRSLKDQ
                     ADNINRNVWEMGLALAMKDALRSGDLYLPQSKQHVSFWDLTLNEPSWDETRQAVYTEL
                     QQPPPHEVRAAISTQFHESVSEAKKLFGLDNFAEIQNGRLKLKRDDKLEVPDKVNQLQ
                     KVIDAHMPSIRIEQLLMEVDQMTHYSRHFVPIQHHQSRPKAFYKSLMAAIISQATNLG
                     VVSMSNSVKGVTVDMLRHILQYYIREETLINASAEIVYQHHELPLSAVHGTGTLSSSD
                     AQRFKIRADSLLASYYPRYYGYYEKAIGIYTHVSDQYSVFSTKIISCSPREALYVLDG
                     LLENNTILKIREHTTDTHGYTEIVFALCHLLGFYFMPRIRDLKDQQLYRIDKTVDYGD
                     LNHLLTKTADLAIIEEQWEYMMRVAISLKQKTAPAHVIVQRLTNSSPSDRLTKAFTNL
                     GRIIKTEYILRYLTDKELRQTVQRQLNKGEYRHKLPRWIFFADQGEFTTGDYEEIMNK
                     ASSLSFVSNAILYWNTIKISDIVEQLRQQGEEIDDETLSHISLLPYKHVLPNGTYFIE
                     DEEKG"
     gene            19189..20118
                     /locus_tag="JBH85_02170"
     CDS             19189..20118
                     /locus_tag="JBH85_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011786632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate resistance protein"
                     /protein_id="HAU0944992.1"
                     /translation="MSWILLILSLPTENATVLMRAWRAIKALGAVSLRDGVYLLPAIS
                     DHAEKLEAIAQDVRDNGGTAHVLHANDPETEAFPALFDRSEDYESLDSAMADLRAKLL
                     PETAMEVMKETRKLRKSFTRLSAIDFFPGAARDRIDTALKQLESDANRVLSPDEPQPE
                     PRTIRRLDRADYQGRLWATRRRPWVDRLASAWLIGRFIDPSARFLWLASPDDCPDEAL
                     GFDFDGATFTHVEEKVTFETLLASFDLDSPALLRLGKLVHYLDVGGHQPPEAAGVECV
                     LIGLRETHSDDDQLLQAANQVFDSLLVTYVKEQ"
     gene            20121..21578
                     /gene="chrA"
                     /locus_tag="JBH85_02175"
     CDS             20121..21578
                     /gene="chrA"
                     /locus_tag="JBH85_02175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001312397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate efflux transporter"
                     /protein_id="HAU0944993.1"
                     /translation="MHEPSTSSAPPSSGSNQITRDATAGNLNAFGHYITFGEAVRVWL
                     RVAILSFGGPAGQIAVMHRILVDEKQWVSESRFLHALNYCMVLPGPEAQQLATYIGWL
                     LHGIKGGLVAGALFVLPGFLSILVLSLLYAGYQEASLVQALFFGIKAAVLAIVIQAVI
                     RIGKRVLKNAYMYALAVAAFVAIFFFAVPFPIVIVTAGLIGLLGRHVDPERFVVIKGH
                     DTPEDAGRAIDAMMEGGAASHTRASRGRALKVLAVWLPLWFAPLVALLVTLGYEDVFT
                     QIGLFFSKLAVVTFGGAYSVLAYMAQEAVQNYGWLAPGEMLDGLGMAETTPGPLIQVV
                     QFVGFMGAFRAPGTLDPFTAGILASVLATWVTFVPCFLWIFLGAPYVETLRGNQAVSA
                     ALSAVTAAVVGVMLNLAIWFAVHVAFNEVETVRAYGMLLLIPAWGSIHIVSVALAAGA
                     FIAMLRFKVSMLPMILVSALLGIVYHLLFAGAPAA"
     gene            21679..22539
                     /locus_tag="JBH85_02180"
     CDS             21679..22539
                     /locus_tag="JBH85_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1259 domain-containing protein"
                     /protein_id="HAU0944994.1"
                     /translation="MQASITMADDSGRLDDKAIGQAAGTQATAKPDGVVRIGWKRDDV
                     PVTVDGMKFPPPAGLGSWAAFKALPEGGVMVMGDTVVFEDEITPAMDAAFAHGLDITA
                     LHNHFVFDRPPVYFMHIGGHGRNAESLAEGVKAMWDAIKQVRKKHPVPQERFPGDVPD
                     ITGKYNTKTLEKILDAEGSLNGQVLKFTFGRSARMHGVEFGASMGLSTWADFSGNEKQ
                     AVVDGDFAMTADEIQPVMRALRQAGIHIVALHNHMTGETPSYYFLHYWGKGQPEDLAK
                     AIRAALETQR"
     gene            complement(22569..23576)
                     /locus_tag="JBH85_02185"
     CDS             complement(22569..23576)
                     /locus_tag="JBH85_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAU0944995.1"
                     /translation="MNTKPPKMATDLALRNEESNQIAHRESESLRHYLQAATSDNTRK
                     AYRSAIRQFEKWGGRLPTDRDTVVRYLLARAESLNARTLDLHLTAISQWHHYQGVTDP
                     VRDPLVRKTMEGIRRTHGQPKRKAKALRLEHIAQMVDYLRCLPDSKKKHRDIALVLTG
                     FFGAFRRSELVAIQISDLNWEPEGLIIRLPRSKTDQQAAGLARALPFGTPGCCPATAI
                     KAWMDSAEIDSGPLFRPANRWDQVTPRPLNPGAINDLLKTLGKACQFDFVPELSSHSF
                     RRGLSTSAARERVDFELIKKQGGWKSDATVWEYIEEGQQLSNNASLILMEKLVTLIDP
                     V"
     gene            23784..24833
                     /locus_tag="JBH85_02190"
     CDS             23784..24833
                     /locus_tag="JBH85_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007645345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partitioning protein ParA"
                     /protein_id="HAU0944996.1"
                     /translation="MARAGVTYHDVAKAAEAIKTQGQEPTVDRVREHMGTGSKSTIAP
                     LLKRWRSDNGEVADIGGLPNDLVEVVKSLHERVQQMADHRIEETRQEFEASNKELRKE
                     LADSKNTIAQLTARQQDLESQIERQNKEKSALDKSLEDVRISVVKAEAQRDEAIVRTA
                     ELKESIAELKQENKDIRDHFEHYQQRTAEDRQQEREQFRIDTQGLKDQMQELQHRFDQ
                     AESRVSELFDANAQLQSNADKLEQTNATLNRDLNGKVDETQNLKRDLEDAMTKNQEYQ
                     HKNEQLAEKIAALTAQKADVDKELAVLSQALKATKTEVKTIQDKVTYLTDENKVILQE
                     KAMILGQFKQLQGSL"
     gene            25742..25939
                     /locus_tag="JBH85_02195"
     CDS             25742..25939
                     /locus_tag="JBH85_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019232989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, HicA family"
                     /protein_id="HAU0944997.1"
                     /translation="MKSAEIIKIIERDGWVQCHQKGSHCQFKHPTKKGRVTVPHPKKD
                     LPIKTVASIFKQAGINKEDIK"
     gene            25936..26340
                     /locus_tag="JBH85_02200"
     CDS             25936..26340
                     /locus_tag="JBH85_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HAU0944998.1"
                     /translation="MRYPVVIHKDEHSDFGVIVPDIPGCYSSGSTYDEALTNVIEAIE
                     CHLEGLLIDNEPLPVGTTIDRWINDEEFQGGVWAFVDIDLSQISGKAKRINITMPERI
                     LSLIDLYAKNHAIKNRSSFLADAALSYMESHK"
     gene            complement(26959..29964)
                     /locus_tag="JBH85_02205"
     CDS             complement(26959..29964)
                     /locus_tag="JBH85_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020503586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
                     /protein_id="HAU0944999.1"
                     /translation="MPVDFLTDEQYQSYAKYPETLTQDQLDKYFYLDDKDKELIKACR
                     RDYNKLGYAIQLTTVRFLGTFLANPIDVPNQVVHYIAKQLAIELPVVLASYMDRKATR
                     LDHCGEIKTVFDYKDLGGIWGYRLTHWLYDQAWYGNERPSILFERCTLWLISRKVLLP
                     GISTLTVLIAKVRDRVSKRLWQRLTLLVDINQRQQLENLLLVPDGKRYSKLDELKNGP
                     THISSAGLVQALKRYQYIRDLGLGQTNIGNIPKAKINHLARYVTVSWAPSIARMPDDR
                     RIAVLFSFAYVYEITALDDALDLLDMLITEITAAAKRLGERKRIRSLGDLDKAALKLS
                     DFGDLFLQHDGEQNLPAVIYKAISKDTISNAVEIIRQIAKPHHDKYYDELLEQYKTVR
                     RFLPTLLSTVKFQTTKEGKSVQAAIEFLASIEGKRKPSFQNAPLDIINTGWRNIVINP
                     KTKEIDRPGYTLCVMDHLQTNMRSRDMHVVFSERWCDPRAKLLRGAAWDEHKIPVCRS
                     LNLSIDFDEEFGYLSSILEDKYQNVLQRLPQNDAIEIVKNSKGKDRIKLSRLEKIEEP
                     ESLKILKSKIDKLMPRIDFPELLLEANRMSDFTDECTHISDNNSRISGIEVSLCAVIM
                     AEACNIGIEPLINEDSPELTRNRLSWIQQNCIRAETIARSNAKLVDLHSQQPLAKKMG
                     TGNIASADGVRFTCAVKTVNSGPNKKYYGPKRGLTYYNFVSDQNAGFHGIVITGTLRD
                     SLYLLDGMQDQQTSLDIKEIMTDTAGASEIIFALFWLLGYQFSPRLADVGGARFWRVD
                     SKADYGVLNDISNHKINEASIRKHWEDILRVAVSLKLGHVSASDLIRSLFRKNRPSGL
                     AKALMNLGRIIKTLYLLNYIDSEGYRRHILIQLNKGESRHSLARTVYHGKRGEIHEKY
                     REGQEDQLNALGLATNAIVLWNTVYMQAALDYLRAQGEVINEEDEARLSPLGRKHINF
                     LGHFSFMLPKVVAEGQLRSLNVAEKLELA"
     gene            30100..30672
                     /locus_tag="JBH85_02210"
     CDS             30100..30672
                     /locus_tag="JBH85_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012281029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAU0945000.1"
                     /translation="MPKLVGYARVSKNDQDVQLQLNALEAAGCAKNKIFIDKISGVRT
                     ERPGLDKCIAELEAGDTLLVWRLDRLGRSMAHLVTLVEDLGKKGIGFRSLCDGAIDTT
                     TASGELIFNIFSSLAQFERRLIQERTKAGLEAARARGKSGGRKKIASNNPKVLTAKSM
                     HKNHGMSIGDICKTLKISRASFYRYLSLSE"
BASE COUNT         9203 a         5965 c         6518 g         9074 t
ORIGIN      
        1 tgatacctgt aatggtctct gtgatgatat ctttgtcgat atccatgtcg ttactcatct
       61 ttagaaattt tgagttaata taaaaatggt tagccgggtt aatacagttt tctgaactaa
      121 agagggtgct aaatttggat atcattgctc gtgttgcaaa tattgtttta atgaatgaat
      181 atttcgcctg atttttctca ttatttgaga tttagtatta tactgacaat aactctttcg
      241 gtggatgaaa agatgtgtgg tcgatttgct tatattgctt cttatgacaa gctaaaatac
      301 caatttcatc tagccaatgc gattgaaata cctccgcgct ttaatatttc tccaggagct
      361 gatgtagtat gtcttgttga aaccgttggt catgaaattc aatgcgtatt attgcgttgg
      421 ggattgattc cttcctggac aacggacaga aaaaaattag gaaatctcat caatgcacga
      481 gccgaaacag tttttgaaaa accgactttt cgtcagtcaa taaaatcgaa acgatgttta
      541 atccctatga gtggctttta tgaatggcgc caagaggatg gtgtaaaaca gccttatttt
      601 tttcaaaaaa agaatcatga tttgctggct gttgctgcta ttcgggatat ctggcagcag
      661 aatgaagagg ttattcattc ctgttgcctg attacaacgg atgctaatgc atttatgcaa
      721 ccagtgcaca atcgtatgcc agtaatttta ggtgaagagg ctcaagctat ttggcttaac
      781 aacacgcaat gtgataaagc acaattaatg gcgttaatga aaccttatcc ttatgaggat
      841 ttggaaggct atcgagtgac tactttagtg aacaaagcca attttgacca tcccttggcg
      901 atggagccat tatctgaata aaaaaattta aaaataattt tcctaatatt ctcgaagact
      961 tagtgttgat ttcaactcat gctgttctga ggcgggattt acagcttatt tttccttgtc
     1021 tatgatattt gtacgtaaat caaaaaaaga atcatcatgt caccacgagg tggaaaaaga
     1081 gaaggggcag gtcgcccaag gggtgagcct accaaagcag ttcgtatacc attatcccaa
     1141 cttgcaaaat tagagcgttt aaaaagtcac gaatcatatc aattgccggt atttgccagt
     1201 aaaattcaag caggatttcc atcacctgcc gatgattaca tcgaagggta tcttgattta
     1261 aacaccaaat ttattaaaca cccatcgtct acctttgttt tgcaagccac aggggagtct
     1321 atggtggatg ctggaatttt ttctggcgac tggctgttag tcgatagaag catagaacct
     1381 tcggatgggc gcattgtcat tgcagctgtg aacggtgaac tcacggtaaa acgcctttcg
     1441 aaaaaagggg gaagggtgca attacttcct gctaatccca aatttcaacc cattgacatt
     1501 acagaggaca gtgagatggt gatttgggga gtggtgactt tggttctaca tgagcttgcc
     1561 tgagatgttt gcccttatcg attgcaacaa tttttacgcc agttgtgagc gtttgtttcg
     1621 tcctgattta aaggatgtcc ccatcgtggt gctatccaat aacgatggct gttgtatcgc
     1681 acgctcgaat gaagccaaag cattgggcat tgccatgggc gagccgtact tcaaaattaa
     1741 acatttgtgc aaacagcata gcgtgaaagc tttttcctca aattatacgc tgtatggcaa
     1801 catgagtcat cgcgtgatgt gcactattga agaagcctgg ccccatattg aaatttactc
     1861 gattgatgaa gcgtttcttg atttaaggag tttaccggtt aactcgcatg atttgttttg
     1921 cgagcagtta caaaagaaaa tcttgaagca cacgggaata cccacttcca tcggcattgg
     1981 gccgaccaaa acactagcca aagccgccaa tcatttatgc aaaaaagttt ataaaatacc
     2041 cgtatttaat atcacctcaa atcgtgagcg gttattacaa cagatttccg ttggggacat
     2101 ttggggagta gggcggcaat gggccaataa attaatttcg cgaggcattc atacggctta
     2161 tgatttggca atgaccaatc ctcaccttct gaagaaatgt tttaacgtcg tgttgatgcg
     2221 tacggccatg gagcttcaag gaattgcttg tagcggttta gaggcaatag agcctaaaca
     2281 aagtattatg tcatctaaaa gttttggtca gatgcaaacc caacttgctt cgattgagga
     2341 atcaatcagt agtcattgtg ctcgtgcggt ggagaaaatg cgtcgccagc aattagtggc
     2401 gaagcgtctg gttgtatttg tgcatacgaa ccgatttcgg gaagatttgg cacagcactt
     2461 tcagtccatc gaatttaatc tgattaatcc cacagatgat ttgcgcttaa ttaccaaaat
     2521 agccaaacga tgtctgcaac gcatttttaa accaaggtat tactataaaa aggcaggagt
     2581 atgtcttgaa gatttaattc ctaaaagccc acgacagctg gatatgtttc atcaaccaag
     2641 tgacgagcat ctaaaccaca cggaacaatt gatggcggtc tttgaccaaa tcaatcaaaa
     2701 atatggacga agcacaattc gcctcgcagc agaaggtttt tcaaaacctt gggccatgcg
     2761 tgctgaacta aaatcacctg cctataccac acgatggtct gaagttccgc tggttcattt
     2821 gttttaaata ggagggggaa gctagttaca gataaaatta gtggctcggt atccgaatgc
     2881 cctggattag agaaagtata aagtttccta aaggaaggga atgttttggt tgtttggcga
     2941 ttggatcggt taaggcgata actgaagcat cttatttctt atgtgagtaa attagagaaa
     3001 aagggaatcg gttccatagt atcaccgaag ctattaatac agaaacacct caggtaggtt
     3061 tatgtttcat gtgtttggcg ccatatccga gtttgaacga aatttaatta aagagcgaac
     3121 actggacggt cttgaggctg caagagccat tggtaggcag ggaggaaggc cagaaaagct
     3181 tactgacgaa caaaaagagt tagtcaaaac tttatatgct aataaaaaac attcaataca
     3241 atcaatttgt aagatggttg gcgtaggaaa gactacacta tacaaatata taaatcggta
     3301 aaattaggat attaatcaat atggatatta aactatcttc tgaaactttg aatttgctta
     3361 tagagaaatt gagtaaagcc attggctggt attgtgagcc taaacaaatt agaagattag
     3421 ctaaagcaga tgctgaagct aaattaattt caactaattc ggatattaaa tctcaagaac
     3481 tatatgatgc atacgaaaaa agaaaaattc atcaaggaat aaaagacgaa aagaatattt
     3541 ctaacattat tttaaaatgt ttaatatcta tgaaggaagc gactaaagca gatgacgtag
     3601 atgatgactg gttaagattt ttctttgaaa aagctaaaat ggtttcagat gagcaaatgc
     3661 aagacatatg ggcaaactta ctttctggtg aattggaaaa gccaggttca ttttccaaaa
     3721 gaactataaa tctagttgag ttacttgata agtctgatgc taagcttttt actagcttat
     3781 gttcctttgg cgtttatcat ggaggctctc tatatccttt gattattgat tatcaaaatc
     3841 aggtttatat tgaaaaaggg ttaaattgtc attgctgaat ataaactgat cccctttgct
     3901 gcctgaaaat tgatccccct actatagttt tcttcaggat aataaattct ggaggaggga
     3961 atgattcaat tagaggagtc aaaaatgatt catattttgt acaagcaggg atacagtaaa
     4021 aaagcgattg ctagaaaatt ggggatgtcg ataaatactg ttcgaaaata tcttaaaagt
     4081 ggttcagagc cttattacaa aagacgcgat aaaaaaccat taaagcttga cccctataaa
     4141 gcatatattc aaaaaagatt aaaagatgca acaccgcatt gggtaccagc tactgtgatt
     4201 tatcgagaga ttaaatcgtt tggttatgat ggatgcagct cccagttaag agcctatatg
     4261 catactttaa ggtcaagaaa tgaagaggtt attgttcgat ttgaaacaga gcctggacag
     4321 cagatgcagg tggattgggc tcaattccga agaggaaagg atagattaag tgcgtttatt
     4381 gcaaccatgg gatattccag agcatcttat gtagagtttg tcagcgatga aaccttggaa
     4441 acacttattg catgccataa acatgcattc gaatattttg gtggagttcc ttatacgatc
     4501 ctatatgaca atatgaaaac agtcattatt gaacgaaatg gatatggccc aagccaacat
     4561 cgatttcaag ctggtttttg ggattttgca aaacatactg gatttcgtcc taaagtgtgt
     4621 caaccttatc gggcacaaac aaaaggtaaa gttgaacgct ttattcatta tttaaaatac
     4681 agtttttatt ttcctttagt tggtcaattg aaggcacttg gcttaagttt agataaagag
     4741 acagccaata tgcatgtttt aaaatggtta aatgaaattg ctaatcaacg agtacatgct
     4801 acaacaggag caattccatt cgaacgactt cttgatgagc aagcgacact acaaccgttg
     4861 tcatctacct attctggtaa attattttct cattcggaaa ataaggagat tcactatttt
     4921 agctttcaat tattagacaa cacggctatg caacatgact tgtcaattta tcagaaacta
     4981 ctcgagcgca cagaggaggc tgcatgaata ttcaacatga gcgtatttta tcattatgtg
     5041 aacgcttgaa tttatcagcg atagcgacaa attactctta tttagctcaa gaggcagcaa
     5101 ctcataatca aggatttagt gattttttag aaagtgtatt gactgtagag ttacaggaaa
     5161 aacagtatcg aagtcgaacc ctgctcacta aaatggctgg ttttccaatg attaaaacaa
     5221 tagatgattt tgattttaaa tttgcttctg gtgtaccaaa aaataaaatc cgagagctga
     5281 cctctttggc tttcattgaa cgacaggaaa acattttatt acttggtcct agtggattag
     5341 gcaagactca tttagcgatt gctctgggtt atttagcagt tcaagcaaac attaaaacaa
     5401 aatttattag cgcagcagat ttgatgttat tgcttgaaac agctcatcgc caagggcgat
     5461 ataaagatat tatgcgacgg gttattaata acgctcgact gctcattatt gatgaaattg
     5521 gatatttacc aatgaaccga gatcaggcaa atcatttctt ccaggttatt gcaaatcgct
     5581 atgaaaaagg ttctattatt gccacctcca atctcgcttt tggtcaatgg gacaatactt
     5641 ttgccggcga taaagtatta acagcagcta tgctcgacag attgctccat catgctcatg
     5701 tcattcaatg cagaggtgat agttacagat taaaagacaa atttaaggcc ggtttaattc
     5761 aaaatcaaaa ggaggagcaa aataatataa ctgattaatt tttttacccc gggggatcaa
     5821 ttttcatctg gcaaaaggat catttttcaa tcggcattga caaaattttg aaaaattaca
     5881 acatttagat aatatcgggt taattaactt tgattcaata gtgcactttt ctataaatat
     5941 agatggagaa aagtcatatt ttagctactt tggggatgtt attttattta aatttaataa
     6001 aaaaactaat aatgaagtgt caattggtaa agtaatgttg actgagcctg gcagacagtt
     6061 atcaaaaatt tgtggtgcaa caaaaataga gggttatgta gatagaatta ttgatcattt
     6121 aaagggtatg cccaatgtag aggtagaaaa taaatgaaaa aagacgatgc aaaaacagaa
     6181 atatatagaa tctggcttaa ttggaatgag ccacaagata aatatctacc ccgctttggt
     6241 tggtctttta taattggcta aagaggaaca agcccaattt aatgtcgttt cgttgcacag
     6301 gagataagta tcaagtaata aatacatggg ttaagggttg gcaaggagat cgctctgatg
     6361 attattaact tttcagttaa tagtaaaaaa tagtttaata gcttacagag taaatccgtt
     6421 aatttaactt ctgattacca gaaaagacta attattgttg gtcgacagca tgtattaaaa
     6481 aaacatgcta aacggaaggg ataatagaaa aaaatatata tttacttttt ccaacccagt
     6541 agtttggcac aagattattt ttatttaacc gaaaattgta ttccctttta tcccaaacag
     6601 tttgatagat atatcgaatg tttagccaac cataagcttc ataataactc atatagaact
     6661 cgtcatttgt atatggaaag aacattgatt ctccggtcat cattacttta gttaaagggt
     6721 aattaattgt cgccatatta atacaaaact gtattactaa acttttgtta taatctgccc
     6781 ctagaagggt atcgatcagt tccttaggta caggctttgt gtgggagcta tccaccatac
     6841 aacaaaatga tttaataaag tatttaaaca aattttgttg atcgatttct aaatcagcta
     6901 cctttaccct tcggtttttc aaaatactct tttgattttg gattagatat tcaaaaaatt
     6961 tttcgtatgc cctatcaaag ggctgtgttc tttcgcaatt gcatttttga caaagattat
     7021 aatcatattt aattaaccct gaattagggg attgtagttt tttaattttc ttacctactg
     7081 taattgttgg atttttctca tataaaaata aatagttaac ggtggttttt ttaattcgat
     7141 gctcacgtgt cgtagcgata tccccacaca gccaacattt gttcattttc tactccattt
     7201 tttctacatt atagaattgt tattggttct attgtgttgt cgagttcatt tttattaaca
     7261 caatgctttg aatgataatt aaatttagag agaaactgtt gtttatttaa atttagaata
     7321 attaatcaga ttgattagcc caatttgctt ggttttagtt ttggaagcag ggttgggtgg
     7381 ttaacagcca cctttttatg ttaactcata ttgaaagaat gctaacgccg gtttgccaaa
     7441 taaatgatca tacgttagtt ttgataattt ggtctctaaa ccaaagtaag actgatggaa
     7501 tatcattcag cacatagata aacttcagta cgcaaactta aagaagttct aatgatagtg
     7561 aatggtgcgt gggaagtatg tgaaaagata ttagagggga ttgatctctt gataatttct
     7621 cagtgcttcc ttatgagaaa tgcactggct gggtgaaaga agatgttaga atttattctc
     7681 attgtaaact ttgattttag aatagataac gtaataaaat ttgaaatttg attaaatcat
     7741 taaccccgca aattaatgac taaaacttag acagttattt tcaaataata aatactaatc
     7801 tatcattagg aaagtgctga gataaatatt ggtatttgat atttatttaa caggcaataa
     7861 ttattaagag ataaattcta tgttagcaat atcaccagct catgaaattg gcgcttatga
     7921 atatttattt gatgaagtag tttcatcata taaacagctt tcggatttaa tgaaagaaaa
     7981 aaaagtaaat tttgctagcg aattagtaaa cagctcatta actaagaaat atatagatca
     8041 agtctggaat ataatttcca aacaacccat agacattaat gtatttgttc gtgggactat
     8101 ggattattta gataaacttt atgatgctga atactcgctt cctcttcttt attatcaagg
     8161 aaatttaaac tatttacaca caaaaggtgt cgcagttgtt ggaactagaa acccttcacc
     8221 tcttggagtt aagcgaactc agaaattagt aaaactctta ttagaacagg atattactat
     8281 tatatctggc ttagcatcag gtatagatac cgtagcacat tcaacagcta ttgaaaatga
     8341 aggtagaact atagccgtta taggaactcc aataactagc ttttatccgt ttgcaaataa
     8401 aaatttacaa ttagaaatag caaaaaacca tttattaata tctcaagtac cgattattcg
     8461 ttacagcaaa ggaaatccta aattaaaccg atttaatttc ccagagagaa acaaaacaat
     8521 gtcggcaatt agtgacgcaa caattatagt agaagcgagt aatacatctg gaactctcac
     8581 tcaggcaaaa gcagctctaa agcaaggaag gaagttattc attttaaata ataatttcga
     8641 ggatagtact cttaattggc cagcgaaatt tgaaaaatta ggagccatta gagtttcaga
     8701 tttttctcaa atcgttgatg ctttaaaatg acaaatttac ttgtaattga tgagttcgat
     8761 atagcaagac atcggagaaa tcttaccatc caagaccggt gttattttta ttttacttac
     8821 aatgggaaag ccgattatat aaataaccca acaagaagta tgataaaaaa tttaaaacga
     8881 tccccttctg agcttaaagg taatcctact tttacttatt tcaagaataa agaaatagat
     8941 aatgtatcca aattaatata cgaaaccata attgaacagc ctcaattttt agactatata
     9001 tggatacctg tagcgccatc aaaggaaaag agtgacccag agtatgatga tagattgata
     9061 caaattttat taaaagttca gaaaatgcta ccaaaattta gatttttaga gattttttct
     9121 acaaaaattt ccacaccacc cagtcatcaa actaacaaaa gagatataac tgagaaaatt
     9181 caaaatttgg aaatcgataa ttatttgata agtcaattag gcaataatcc tattttaata
     9241 tttgacgata tgattacatc cggcgctacc ttttgcgcct ataaaagaat attaaaccag
     9301 aataactgtt ttgcggtgga aggttttttt ctttgtaaag cgacaagcga tatcattgac
     9361 ctggattaaa agaggtctaa ttttataaat gtaattattt aattttaaac tacttatata
     9421 aacatctttt ttgcttaagc atggtaaaca ttataattac ctgaaccagc tggattttta
     9481 atataaaaga atctggaatc actgtaatat tgtcgtttag aaataaatca tttaaagaag
     9541 aggcattcat agtagagaaa gttgcttgca gggaagtgtg gcacctaaat tatccagagt
     9601 agattcaact tggccatgaa caataaagtc tgattgctga gaaaattaaa tttaattgat
     9661 tagtatctat tgaatcatca gaatagccta aggctgtatg ttaattatgc acgtatgcta
     9721 aaaattacta cctgatgagc taggagatac ccagccgtgc tgtttgaatc acgctgagtc
     9781 aatgctaaat tactgagaat tatttaatcc tcaaaaactc aataataaat ttagatagtt
     9841 cacaaaatca tacggtgaat gctctcctgg tttcgtcagt tgctgaaata gtagttggtt
     9901 ctgattagtt acttattgat tgttttttaa gtattgatag agtgtttctc tgctgattcc
     9961 aaattctttg gctaagctag tctttcgttc gccagccttt gctcgctctt gtagaattgc
    10021 agcctgttcc ttatttaaag agggcttcct acctctgtat ttcccttttt gtttagcaat
    10081 ggcaatacct tcaagctgcc tttctctaat taatgcacgt tcaaactcag caaaggcacc
    10141 cataatagat aaaagcaagt tggacatggg cgagtcatca cctttaaata ccaaattttc
    10201 tttgataaaa cgcagagtca catctcgctg tgttaaactt ttaacgagtt gcctcaaatc
    10261 atccaggttc ctggctagtc ggtccatgct gtgaacgact acttcatcgc catcacggac
    10321 ataatcgaga agtttttcta gttgcggtcg tttaatactt ttcccggaaa tgtggtcgat
    10381 aaatttttta tctagaataa ttccctctag ctggcgatct gggttttggt caaaagagct
    10441 tactcgaaca tatccgatgg ttttacctga tgaagacata aaaactccat ttctataaaa
    10501 tcgtcaggat aaagtttaag actttaaatt gattatgtca atttattaaa aatttagctc
    10561 tattctgaca tattttttca ctttgctcag tgtcaattta gcgtatacca caagatgaca
    10621 ccaataaaat cccaataatc tagcaattcg aataatacag gcaatgaaaa acattttttg
    10681 tgatgaaatg attcttatag ctgaccatca tttttgatca tatttaaaag ctggctgtag
    10741 acctaacaca gatccaaaac gttgtgatgc ggtaataaaa gaacaataag atattaattc
    10801 actgatttcg ttagtcaaga aacattgctt taactcatca atatcttgtt cattgattat
    10861 tttatgatcg atagcaaatt tatttgcaaa ttttaatgcg gccgtaagca gaatatcttc
    10921 tggtagttgg tcaggaggtt ctgccttagc tatataatag tagcaaagat tatcaaatac
    10981 taaagcgcgt cttatctgct ctaaaaaatt aggttcaaaa gttttgctct gcaaaaaggc
    11041 attttctaaa ttagaccaat tatttaagat ctccggaaca tagccaagca gtttttcaaa
    11101 aggagaggta ccatagtttg atagtgggat atgggacatt tcaatagatg gttaaaatta
    11161 tcctttggtc tttttatcac tataactata tacggtgcaa gacaactatt ttaaaaatga
    11221 caaatatact ttaattgccg tccgctttac taattagtta ttcgcaaaag tgggcggctt
    11281 gtaatgacga aaacgagtat tgatagaaac taatttttaa gtttttcaca ttcaaacgaa
    11341 tcaatacact taccaaaaat ttctcattta gttagcatca gtcattggca taatgtcttt
    11401 attgaaaaaa taaaaatgga gaactggtgt agaagtatta aaagcatttt caactatata
    11461 atattgtgaa acatcagcgc cttctccaga ttctgataat tcaacatcaa tacaaagata
    11521 ctcattatta tcgaatacta tctttgacca atctgataat tgtgttatac ggtttccagg
    11581 agttatcgaa ggattgactg aatgattttg agctgtattt aaattgatgc gatctgactt
    11641 aagaatcaga taattttcat gattacatgt tattgcaccg taattaaaag atccttctgt
    11701 ggattctatg tgattggtac atccggggga atcatcaact cctgctggcg gaattatttt
    11761 ggtataagta actgaagcgt taactgctct agaattttta caagatccaa tcacttcaac
    11821 aggtacatct gccaatacga attgagaaat tagcattcca aataaaataa tatgtaattg
    11881 atttagtgac attgtttacc cctttgcgcc gttaagaatt cttgtgttaa cttccaaaat
    11941 acagtctgac catatcctgc agttgattca aaagtgtaat tataggtacc aaatttacca
    12001 gttaaatttg ctggggcgct atctccaact gacaatacat catgtgtagg atctgtaaat
    12061 ttataccctt tgcgataatg tctatgtttt gcccctttag ttactaaatc attaccatcc
    12121 caaaagcatc caccatttgc atagtcgaca ccctcaggat caagagcatt cattgcagca
    12181 ttatatagat ctggatattc gatagctaca tcagaacaca tcacttgacg atatcttact
    12241 actttattag aggctgcagc tgaataagct gggttatcca gaattaattg attcacagta
    12301 ggatagccat tagaattttt atatctaact acagcatttg caattgcagc tttttcctca
    12361 taggtgctat tagtagcaga tgcttcccca taaactatag ctgcgagtaa ttttacttca
    12421 gaaaccgtag ctggagtttc agtacaagtt gaatttggtc ttgagcagct taatccatcg
    12481 ttagaacgag tccaggtagg attagggcaa gtggtaaaag attcactgca gagccaccaa
    12541 ggtgtattgt agtatgctaa tgttgaatcg gcgcagtacc aagtattagc tcccataagt
    12601 acgttatctg ttggggagta acatgcaggg tcggcgcttt tgtgtggaac aattttccat
    12661 gtatatccgt atgatgctaa tttactacag gcctcttcat aattagaacc gtgcacaacc
    12721 tcaggacctg ccgtaataat ataagccaag tcatttttat aatttataac ctgtattgac
    12781 gggatagttt cagcaggttt tgcaaatgct attgagctga taataaataa acctaagcat
    12841 aatatttttg atatcctcat aaacatcctt gttaatgaat ttttcccatt agcataaagg
    12901 atctagtatt ggtattacaa ttcttagctt aagaaatagg gaagggaatt aatttatttg
    12961 gttatcctaa caactcatgt aattataata tcaaatgaaa tgatatcatt aattaaacag
    13021 ataaaatttc caaaaatatt aaacaggaat ctgaattatt tggatttgtt gaatttaatt
    13081 ttatcgccag atacaaatgt aaacatccca taatttgtgg caacctaaat tagagttcat
    13141 tcacaatacc ttctaattcc cccattcact gatgcaattt actttgcaat attgttgttc
    13201 catctcatct ttcatttggt tataaagtac agattaattt ctccgtccaa aatataagtt
    13261 gacataaatt cataattagt agcaaaattc aattcggttt gaaactgacc tatccgccta
    13321 caccctttaa agggacggta aatagtttct acgctatcct aaatcataat tagatcttta
    13381 atggttagct tccaaaatgt aggcattggc aacagcaaat aactattgag gaattaaata
    13441 tgacttctct tattgaattt aaaaaacaag caaaaatctt acgcgatttt cttggccaaa
    13501 aaaatcatga tattacacat tcttcttgtt tagaggctat tgcaataatg aatggcttta
    13561 agaattggaa tactatgtca gggatttttg caaaaaatgg taatgcatta gaaaaaagat
    13621 cgaaaacttg gatttgtgac acgtgtggtg gattgattca gaaaccagaa gagggatggg
    13681 tagaatggat tgtatctgta cctaaaaacg aggcatacgg tcttcgcttg gcgcatcgtg
    13741 ctggctatgg ctcaaatgga agttcttgtc aatataatga ggaattagtg tataaacaat
    13801 atggtggtat aataaatgat ggagagctgt cttggtatct cggagatggc gggctaatgt
    13861 tattactcac cttgcttgaa gaacaacaga taccacaaga ccaagtactg gaaatgatca
    13921 aacgacttca tattcctgag tatgaacatg ctcgtcgtca ctttaatgag taggatcctt
    13981 aaagtataaa tttttaaatt tttaagaaaa atcgagtttt tgcttaataa atttgagcct
    14041 tacaataaag ttggtcgagg gggaattgaa cgccacaatc catgtggctt ccatcttgcc
    14101 tgatgctcca attccgcctc ctcgtttttt tatcataaca aattccagaa tggagtcacg
    14161 gatataaatt ctgaatggtg tgtaagatat ttctcattct taaaaatatt aataataaca
    14221 ttgataccaa atcataaatt tgtataatct tgcttaacaa gcgaggttgg acttgctttg
    14281 tgtcaatcca atgggtgtgg tcgcgacaca cgaccagccc tttctacttt gaataatcta
    14341 cttgtaaaaa gacactctaa caccatttta aatggtaatc ttcgtcatct atcctcctat
    14401 tcgctatgaa tattgactac ataaaaaaac aatacaaggt ctactcttca ttttactact
    14461 gtgttccacc ttgtattgtc tttttattcc attaaaacaa taaattgcga atgggggatg
    14521 gatgacgaag caacaacagt actaaatgtt tgttttgcat tttaacaagg aattcgcttc
    14581 gctcattgat ttggttttga aagcgatggg tttaggaatc agaagcatca acaaaataat
    14641 agaaaacgca agaaatgcaa agaaaaaaaa tgagaaaaaa caacgtgcaa aaagaaaaat
    14701 ttattgaaaa atcataatct tagcgttaaa ataaaggggt atttaagtcg tgatatcaag
    14761 ctgttggagc agctcaatat cactcatcat caacactatt ggagtagtga aaatgactaa
    14821 tgtgaatcta tcaaaacctt tccattgtat caaatctttt tttatcgctc taaaaataaa
    14881 caagtctatt tcaaatcatt taaaactgct tatatccaga aatcagctgg attccatcgt
    14941 ctacagtaac ctttaacgca ttgctcaatt tagccaagga cacgttaaag aacaaataga
    15001 taaaggatga gatatcatga aatcatatca ggaattttgt gcactcaatg ctcgccgttt
    15061 gtttgcaatt attgagaaac atgggggttt attgcaatgg aaaaaagagt ggagtggtga
    15121 gggattaaat gcgttacctc aaggcatcaa tggtatttat cggggtggca acttgttttc
    15181 tttatttttt gcgcaaatgg aaaaggggtt taaatccaac caatggctga cgttcaacca
    15241 aattaaaaag ggaggtggac aagttcttaa tggatcaaaa gcagaagaaa tttatttttg
    15301 gtctttaaag gatcagatag aacttaatca aaaaactaat gagtctgaaa aaaaatcatc
    15361 ctttattttt aaaacctatt atgtttttaa tctggaacaa actaccttgt ttaaaaagga
    15421 ggggggtcaa aacgagcagt tccaatgcaa tcagttgctg aattatatta agccatctat
    15481 tagccacttt gggaatcatg ctttttatac accagtaaat gatactattg tgttgcctca
    15541 cagagagcaa ttcactgata aggctgccta tgaggcgact ctattacatg aattaacgca
    15601 ctggactggt gtggaatatc gcttaaatag agaaagtttg aaagcctatg gaactgaaaa
    15661 gggtagggcg gaagaagagt tagttgctga atttggcgca tttttccttt gtgcattttt
    15721 taaaattaaa agtgatattg aaaatcatgc ctcctatgtt aactcatgga aaactctatt
    15781 aaatgaaaag gaaattatgc gagctactaa tatggcagca aaagcatttc attatcttgt
    15841 tgagcctttg caaaaagagc aggctcaaat tgcagcgtag tctagtgccc cgaagagggg
    15901 cttcaaaatt gagacctggt tgagcaaaag atcttgattt tgtgttggtt aaagcttggc
    15961 ttctgttgtt attgaataat atatttttaa gttcgaaagg ggattaagga cccgcggggg
    16021 catttgaacg agaacctacg gttttgaacc cagtgaccac gtcgaaaccg taggtttccg
    16081 gcgaatcatc ccttctcctc atcttcaata aagtatgtac cgttgggtaa cacatgctta
    16141 tagggcaaca acgagatatg agataaggtc tcgtcgtcga tttcctcccc ttgctgccga
    16201 agctgctcca caatgtcgct tatcttgatg gtgttccagt acagaatggc attggacaca
    16261 aagctgagac tactggcctt gttcatgatt tcttcatagt cgcctgtggt gaattcaccc
    16321 tgatccgcaa agaatatcca gcgcggcagt ttatgtcggt attccccttt attcagttgc
    16381 cgttggacgg tttgacggag ttctttgtca gtcaggtacc gcagaatgta ttcggtcttg
    16441 ataatccgcc ccaagttcgt aaaggctttg gtgaggcgat ccgaaggtga actattggtt
    16501 aatcgttgga cgatgacgtg tgctggcgca gttttctgct tcagtgaaat cgccactcgc
    16561 atcatatatt cccactgttc ctcaatgatg gccagatcgg ctgttttggt gagtaaatgg
    16621 ttgaggtcgc cgtaatcgac ggttttgtca atacggtaaa gctgctgatc tttgagatcc
    16681 cgaatgcgtg gcataaagta gaatccgagc aaatgacaga gtgcgaagac gatttcggta
    16741 tagccatgtg tatcggtggt gtgctcccgg attttcagaa tcgtgttgtt ctccagcagg
    16801 ccgtccaaaa catacagcgc ttcacgcggg ctacaggaaa taatcttggt gctgaacact
    16861 gaatattgat cggaaacgtg ggtgtagatc ccgatggctt tttcataata accgtagtag
    16921 cggggatagt aagaagccaa caggctgtcg gcgcggattt taaagcgttg cgcatccgat
    16981 gaggacaatg taccggttcc gtgcaccgca ctcaacggca gctcatggtg ttgatacaca
    17041 atttcagcac tggcgttgat cagggtttcc tctcgaatat agtattgcag gatatgccgg
    17101 agcatatcga cggtcacacc tttaacgcta ttgctcatgg atacgacacc caggttggtg
    17161 gcctgcgaaa taatggcggc catcaggctt ttgtaaaagg ctttggggcg cgattgatgg
    17221 tgctggatag ggacaaaatg acggctgtaa tgtgtcattt gatctacttc catcagaagc
    17281 tgttcgatac gtatgctggg catatgtgca tcgatcactt tttgcagttg gttgacttta
    17341 tccgggacct cgagcttgtc atcacgtttg agtttcaatc ggccgttttg aatttccgcg
    17401 aagttgtcca ggccgaacag ctttttcgct tcagagactg attcgtggaa ctgcgttgaa
    17461 atggcggctc gaacttcgtg cggtggaggc tgttgaagtt cggtatagac agcctgtctg
    17521 gtttcatccc aactgggttc atttaaggtg agatcccaga acgaaacatg ctgcttactc
    17581 tgcggcaagt acaaatcgcc ggaacgcaag gcgtctttca tagcgagagc caatcccatt
    17641 tcccaaacgt tgcgattgat gttatcggct tgatctttaa ggctgcggcg tagttcgcgg
    17701 ggaatgaatg ctgtcggtgt gttctcgggt agctttttca ggtcgccatc atccaatttc
    17761 cggacgaact caatagcttt tatcagcggc ccggaacctt tagccacttc aaatggtaac
    17821 cggataaagt cggcaaaata ttttcgcaaa ctgggataac gggccagcaa caaatcgcag
    17881 tagccgcgtt cctccaggcg tttaaaaatg tgcaggtcgt caatggatgc cagcagatgt
    17941 ttctcgtcaa tgcgttgcca caagtccttc ttgtacaatg gctgttcatc cggccattcc
    18001 agcaaaacat gcgtggtttc aagcacagca tcgatggctt tcttttggcg cttgcgaaac
    18061 tccttgtgtt ttttgtcgtg gctgtttttg gtttgccggc atagctctgt catgtactga
    18121 tcatgcattt tgaccagatg atccaacagg atcttgcggg attccaacag gaagcaaacc
    18181 atcaatgcat agcgcttatg gtccttgaag cgcttcatgt ccttagcgct gtaacgcttg
    18241 gtcagtcggt acaggtagtt aagaaaagcg gtatcaatga ccttttcttc gaactcatta
    18301 atgccggtgg acaccagatt gtcatagcgt tccaaatagc gtttcagtga tgatattttc
    18361 gcacccggcg ggtactcttt gagttggttg aagtaggttc gttgattgcc gtcggtggct
    18421 tgcaacaaat cgtcaatggc atcgcgtaat tccggcgaca tctgatcaaa cacttgctca
    18481 aaaagctgag cgtgtacctg gttacatatg cggatgatct gtctttcgat cgtcgtgggg
    18541 ccaggtaaaa caatacgttt caacagaagg tggcgttctg cccggtgaaa aagttcatcc
    18601 ggaagcagtc cctgttgggc atgttcttca atccagcggt ccagatctgc ttccactttg
    18661 tcgtcaaacc gatgaaagcc caggtacttg aggatattgt tccggtgttc caacaccgtg
    18721 gcttctcttt cgggcacttc caccgttagc gtaggaggaa gatcgagttg actactcaga
    18781 tagctgatca ctcgtggcga aagatcatga agctggttta gaaaccggcc atagaggcgc
    18841 atggcacaca gttggatggc aaatcccagg cgatattgct tgcgatactt gttgacgacc
    18901 tcgcaatcac gacggcttag cgtccaatcg cgaaccattt cctcatcgga gaatcgttgc
    18961 ggcaatatta acggttggta ccgctgctga ttggttaaga actgctcttt ggctgtcata
    19021 ggacctcact tggctccggt cacgccaact acgctatagc gctgttttta ttgatggatg
    19081 cggtatttaa aggtgcatca ccgcctttaa aggcaatcgc tcttgcccaa gggttattcg
    19141 gtttaaaaat gtgtagagat tataacatat atgtgctaag atctacgcat gtcctggata
    19201 ctgctgatac tttcactccc cactgaaaac gccaccgtgc tcatgcgggc atggcgcgcc
    19261 atcaaagccc tgggggccgt ttcgctgcgt gatggcgtct atctactgcc agccatctct
    19321 gatcatgccg aaaagctaga ggcaattgcc caggatgtcc gtgataatgg cgggaccgcc
    19381 catgtactgc acgctaatga tcctgaaacc gaagcgttcc ccgcgctatt cgatcgctcg
    19441 gaagactatg agtcgctgga ctcggcgatg gcggacctgc gggcaaagct cttgccggaa
    19501 accgccatgg aggtcatgaa ggaaacacgc aaactgcgca aaagcttcac gcgactgtca
    19561 gccatcgatt ttttccccgg tgccgcgcgg gatcgaatcg atacggctct gaaacagctg
    19621 gaaagcgatg ccaaccgggt cttgtctccc gatgagccgc agcccgaacc tcgcacaatc
    19681 cgccgtcttg atcgagccga ttatcaaggc aggctctggg cgacgcggcg tcggccgtgg
    19741 gtggaccgtt tggccagtgc ctggctgatt ggccgcttca tcgatccatc cgcacgcttt
    19801 ttatggctgg cctcgccgga cgactgcccg gatgaggcgc tggggttcga tttcgatggg
    19861 gcgaccttta ctcacgtgga agaaaaagtc actttcgaaa cgctgctggc gagcttcgac
    19921 ctggattcac ccgcgctact ccggcttgga aaactcgtgc actacctcga tgtgggggga
    19981 catcagccgc cggaggccgc cggggtcgag tgtgtattga tagggctgcg cgaaacccat
    20041 agcgatgatg atcaattatt acaagctgcc aatcaggttt tcgacagcct gttggtcact
    20101 tacgttaagg aacaataacc atgcacgaac cgtcaacttc atctgcaccg ccaagcagcg
    20161 ggtccaatca aatcaccagg gatgcgaccg ctggtaacct caatgctttc ggccattaca
    20221 tcaccttcgg ggaggccgtg cgtgtctggt tgcgggtcgc catcctgagc tttggcggtc
    20281 ccgccggcca gatcgcggtg atgcaccgta ttctggtgga tgaaaagcaa tgggtcagtg
    20341 agagccgctt cctgcacgcg ctgaattact gcatggtgct gcccggacct gaagcccagc
    20401 aactggccac ctatatcggc tggctgctgc atggcatcaa gggtggactg gttgcgggcg
    20461 ccctgttcgt gctgccgggc tttctcagca ttctggtgct cagtctgctc tacgctggat
    20521 atcaggaagc gtcactggtg caggccctgt ttttcggtat caaggcggcc gtgctggcga
    20581 tcgtgatcca ggcggtgatc cgcatcggca agcgcgtcct caagaacgcc tacatgtacg
    20641 cattggcggt cgccgctttc gtggcgatct tcttctttgc cgtgcctttc ccgatcgtaa
    20701 tcgttaccgc cggattgatc ggtctgctgg gtcggcatgt cgatccggaa cgctttgtgg
    20761 tcatcaaggg gcacgatacc cccgaggacg ccgggcgtgc gattgatgcc atgatggagg
    20821 gcggcgcggc aagccatacc cgggcgtcac gggggcgggc actcaaggtg ctcgccgtct
    20881 ggctgccgct gtggtttgcg ccacttgtcg ccctgcttgt gaccttgggc tatgaggatg
    20941 tgttcaccca gattgggctt ttcttcagca aactggcggt tgtcaccttc ggtggcgcct
    21001 attcggtgct ggcctacatg gcccaggagg cggtacaaaa ctatggatgg ctggcaccgg
    21061 gggaaatgct ggatggtctg ggtatggcgg aaactacacc cggcccgctg atccaagtgg
    21121 tgcaattcgt gggctttatg ggggccttcc gggctccggg aacgctcgac cccttcacag
    21181 caggcatctt ggcatcggtt ttagccacct gggtcacctt cgttccctgc tttttgtgga
    21241 tcttcctggg cgcgccgtat gtggaaacac tgcgcggcaa ccaggcggtg agcgcggcgc
    21301 tgtcggcggt cacggcggcc gtggtgggcg tgatgctgaa tctcgccatc tggttcgcgg
    21361 tgcacgtcgc ctttaacgag gttgaaactg tacgggccta tggtatgcta ctgctgatac
    21421 ccgcctgggg cagcatccac attgtcagcg tcgcgctggc cgcgggcgcc tttatcgcta
    21481 tgttgcgctt taaggtgagc atgttgccga tgattttagt cagcgcactg ctgggtattg
    21541 tgtaccatct gttatttgca ggcgccccgg cggcgtaacc ccccaataca gccaaaaatg
    21601 tttcacagca acaaaaaaag aggaatagcc atgacaatgt ctccgcttcg agcattcatt
    21661 ctaatgtgcg ctttattcat tcaagcatcc ataacaatgg ccgacgattc cggccgcctc
    21721 gatgataagg ccattggcca ggcggctggc acccaggcaa cggccaaacc tgatggcgtg
    21781 gtgcgtatcg gctggaagcg cgacgacgtg cccgtcaccg ttgacggtat gaagttcccg
    21841 ccgccggcgg gcctcgggag ttgggccgcg ttcaaggcct tgccggaggg tggtgttatg
    21901 gtgatggggg atacggtggt gtttgaggat gaaatcaccc cggccatgga cgccgccttt
    21961 gcccacggcc tggacatcac cgcgctgcac aaccatttcg tgttcgaccg tccgccggtt
    22021 tactttatgc acatcggcgg ccatggacga aacgccgagt cactcgccga aggcgttaag
    22081 gccatgtggg atgccattaa acaagtgcgt aaaaagcatc ccgtaccgca agaacgattt
    22141 ccgggtgatg tgcccgatat caccggcaaa tacaacacca agacgttgga aaagattctg
    22201 gatgccgagg gcagccttaa cgggcaggtg ctgaaattca cgttcgggcg cagcgccaga
    22261 atgcacggtg tggaatttgg cgcatccatg ggcctgtcca cctgggccga cttctccggg
    22321 aatgagaagc aggcggtcgt cgatggggat tttgccatga ccgcggacga gatccagccg
    22381 gtgatgcggg cgctgcgtca ggcgggcatc cacatcgtgg cgctgcacaa ccatatgacc
    22441 ggtgaaacgc cttcctacta tttcctgcat tattggggca agggccagcc cgaggatctg
    22501 gcgaaagcga tacgggcagc gctggagacg caaagatgaa ttgagagtgg gattcgtgat
    22561 ttgtcgggtt atacggggtc gatcagcgtg accaactttt ccatcaatat cagcgaggca
    22621 ttattcgaaa gttgctggcc ttcttcgatg tactcccaga ccgttgcatc gcttttccag
    22681 ccgccttgtt tcttgatcag ctcgaagtct acccgttctc gagccgccga agtggaaagg
    22741 ccgcggcgaa aactgtgact gctcaactcg ggcacgaagt cgaactgaca ggccttgccc
    22801 agggttttga gcaagtcatt aattgcccct gggttcagag gcctgggcgt cacctgatcc
    22861 cagcggttag ccggcctaaa gagcgggccg ctatcaatct cagcgctatc catccaggcc
    22921 ttgattgctg tagccggaca acaacctggc gtaccgaaag gtaaggcgcg ggccagccct
    22981 gccgcctgtt gatccgtttt ggagcgcggc aaccggatga tcaggccttc cggctcccaa
    23041 ttcagatcac tgatttgaat ggccaccagt tcgctgcgac gaaaagcgcc gaaaaagccg
    23101 gtcaacacca gggcgatatc cctatgcttc tttttgctat ccggcaaaca ccgcaggtaa
    23161 tccaccattt gtgcgatgtg ttccaggcgt agggccttgg ccttgcgttt gggttggcca
    23221 tgagtgcgac gaatgccttc catggttttc cgcaccaggg gatcgcgcac cggatcagtg
    23281 acgccttggt aatggtgcca ctggctaatg gcggtgaggt ggagatctaa cgtccgggcg
    23341 ttgagcgatt cggccctggc gagcagatag cgcaccaccg tatctcggtc agtcggcaac
    23401 cggccacccc atttctcaaa ttggcgaatg gcggatcggt aggccttgcg ggtgttatcg
    23461 gaggtggccg cctggaggta gtgccgcagt gactcggatt cccgatgagc aatctggttc
    23521 gattcctcat tacgtaatgc taagtcggtg gccattttgg gtggtttggt gttcatgaat
    23581 tggattccta tcggtgtgac cagaaaggcg gctatgtacc ggcgttacaa gcagaagatt
    23641 ttcagcttaa taccataacc aacgataaca tttattatcg aaggttaaca attgaaactc
    23701 aagaaacttt gataagcata aatataatgt tatattacgt gttacataat acgttactaa
    23761 atagtttgag aggaaatctc cctatggcac gcgccggagt cacttaccac gatgtcgcca
    23821 aagccgccga agccatcaaa acccaaggcc aggagcctac ggtggatcga gtgcgggaac
    23881 atatgggcac cggcagcaaa agcaccatcg cgccgctgct caagcgttgg cgatcagaca
    23941 acggagaggt agccgatatc ggtggactcc cgaatgacct ggtggaggta gtgaaatcac
    24001 tccacgagcg ggtacagcag atggccgacc accgtattga ggagacccgt caggaatttg
    24061 aggcgtcaaa taaagaactc cgcaaagaat tggccgattc caaaaacacc atcgcgcaac
    24121 ttactgcccg acaacaggat cttgagagcc agattgaacg gcagaacaaa gaaaaaagcg
    24181 cgttagacaa gtctctggaa gatgtgcgta tcagcgtggt caaagccgag gcccaacgag
    24241 acgaagccat tgtgcgaacc gctgaattaa aggaaagtat tgcggaactt aagcaggaaa
    24301 ataaggacat ccgcgatcat tttgaacatt atcagcagcg cactgccgaa gaccgtcagc
    24361 aagaacgcga acagttccgg atcgataccc aggggttgaa agaccagatg caggaactgc
    24421 aacaccggtt cgaccaggct gagtcaagag tgtccgagtt atttgatgcc aatgcgcagt
    24481 tacaaagcaa tgcagataaa cttgaacaga ccaatgcgac gctaaacagg gatttgaacg
    24541 gaaaggtaga tgagacccag aacctgaagc gcgaccttga agacgccatg acgaagaacc
    24601 aggaatacca gcataaaaat gagcaattgg cagaaaaaat agcagctctc actgctcaga
    24661 aagcagatgt cgataaggaa ttggccgtgt tatcccaagc tttgaaggcc accaaaaccg
    24721 aggtgaaaac catccaggat aaagtgacgt atctgaccga tgagaacaag gtaattcttc
    24781 aggaaaaggc gatgatccta ggacaattca aacaactcca gggttcgcta tgaaaaaggc
    24841 tgtcacagca ttgaatattc agtaatgttc caaagatgac caagttttaa gggcaaatgc
    24901 cgggttagcg gctatctgac ggaaacctac ggtttcgagg gtgccacagg attcaaaacc
    24961 gtaggttttc gttcaaatgc ccccgctggt ccattaagga taaaaaaata actctctttt
    25021 aatacttaag tgggatctat tttaactcta attctcatgc ttttttattg cgctttgcta
    25081 aaagaacaag catctctcta agtactggat tttagagtat aagcccagtg tattcacaga
    25141 cttatccaca gaaaatgggg ataagtaatc aatgcaaaat attttgataa gtccttacag
    25201 gacaaggggt ttaataaaaa aattatgcta tcaatttgta ataaggctga aaaatgggtg
    25261 tggttatcca cagaggaaaa tatgctggtc actgtttgtg agcacctcat tatgataaca
    25321 aaaaaaatta aaaaaaacag tcttgactga tacaattttt attcgaaaag gaattaggta
    25381 gttttaatta agagttaatt tgtattattt aaagtttgct tgtaggaaat ttttgatttg
    25441 ttcagtgaat attggtcacc taaaatagtt ggtgaggcga atgatttgca aattaaacaa
    25501 gtaaaattta aaggcgagct taaatggcat aagcacgata atcaagatga gttatttcaa
    25561 gttgtaaatg gtaatctatt aataagatcg agggataagg gtattaacct catagtagat
    25621 gaaattctat caagttattt cccagtattc ttttgatgct taattagata tcacaaggtc
    25681 tcatttagtg atatgaaagc cttttcttgc aaatgtgtgt atagtgtgta taatataaaa
    25741 tatgaaaagc gcagaaataa taaaaataat tgaacgcgat ggttgggtgc aatgtcatca
    25801 gaaaggaagt cattgccaat ttaaacatcc caccaaaaag ggtagggtga cagtacctca
    25861 tcctaaaaaa gatttaccta taaaaacagt ggccagtatc tttaaacaag ctggtattaa
    25921 taaggaggat ataaaatgag atatcctgta gtaatacata aagacgaaca tagtgatttt
    25981 ggtgtaattg tccctgatat tcctggatgc tattcttctg gtagcactta tgatgaagct
    26041 ttaactaacg taattgaggc aattgaatgc catttggaag gattattaat agataatgag
    26101 cctcttccag ttggtacaac aattgaccga tggattaatg atgaagagtt tcagggcggg
    26161 gtatgggcat ttgttgacat tgatttaagc caaatatcgg gtaaagcaaa acgcattaat
    26221 atcactatgc cagagcgcat tttaagcctc atcgatctgt atgccaaaaa ccatgcgata
    26281 aaaaatcgtt cctccttttt ggccgatgca gctctgagtt atatggaaag tcataagtaa
    26341 tgaaaagtgt gctgtatagg cttcgtttca attaattggg ttaaattaca gaaacatcaa
    26401 ttcagtttat gtttatccca tatctataat ttaacccaaa aatcatggtc gatgactctt
    26461 ccaaagatgg ttaacatcat caatacctgt tcatgagcta taatccttta tttctgcatt
    26521 ggaagtcttt gcatttaaaa cttcttttta aactattaag tagcatgcta tacaacatca
    26581 ctaattgaat caatcacaaa cgcgcaatcg taatgcgcta cttaagcagt gaataaaaga
    26641 gtaaaaacca aacgcccaat aaataaacaa aacatccagt tctaaaagca gagacacacc
    26701 tttcgcatca ttaaaatatg cgttataagt cctttattta taggtaattt tggttatttt
    26761 tattcatttt tttacctaaa aagatggtga atagctggtg aagggtaatg gtgaagtaaa
    26821 ataattgaaa gttctttatt tttcatggcc tctaacatca acttgtataa tcttcaccat
    26881 ctcttgcacc ataggttcac cattttatct tggggtgtga caatcattgg aacgaaaagg
    26941 tactctaagc aaaaatcatt aagccagctc tagcttttca gcaacattta atgatctcaa
    27001 ttgaccttct gccacaactt taggcaacat aaatgaaaaa tgtcccaaga aattaatatg
    27061 tttccgccct aatggcgata accttgcttc atcttcttca tttatcactt caccctgtgc
    27121 gcgcaaataa tctaatgcag cctgcatata aaccgtattc cataatacaa tagcgttggt
    27181 tgccaatcct aatgcattga gttggtcttc ctgcccctcg cgatattttt cgtgaatttc
    27241 accacgtttt ccatgataca cggtgcgtgc caagctgtgg cgactttcac ctttattgag
    27301 ttgtatcaaa atatgacgtc ggtacccttc gctatcaata taattgagca gatataacgt
    27361 cttaataata cgacctaagt tcattaaggc tttggctagt ccagatggtc tattctttcg
    27421 aaataaggaa cgtattaaat ctgaagcact gacatgacct aatttcaagg aaacagcgac
    27481 tcgtagaata tcctcccaat gcttgcgtat tgatgcttcg ttaattttgt gatttgaaat
    27541 atcattaagc accccataat ccgctttaga atcaactctc caaaaccgtg caccaccaac
    27601 atcagcaagc cttgggctaa attggtatcc caacaaccaa aataacgcaa agattatttc
    27661 gctagcacca gccgtatcag tcattatttc ttttatatcg agacttgttt gttgatcctg
    27721 catgccatcc aataaataaa gagaatcacg aagagtacca gtaattacaa ttccatgaaa
    27781 tcctgcattt tgatccgata caaaattgta ataagttagc ccgcgttttg gcccatagta
    27841 ttttttattc ggcccagaat ttactgtttt tacagcgcag gtaaatctta cgccatcagc
    27901 agaagcaata ttaccagtac ccatcttttt cgcaagtggt tgttgggagt gcaggtctac
    27961 caatttcgca ttagatctag caattgtttc agcacggatg caattttgct gaatccaact
    28021 taatcgattg cgtgtcaatt ctgggctgtc ttcattaatc aatggttcaa taccaatgtt
    28081 gcatgcttcc gccataatga ctgcacataa tgaaacttca attccagata tgcgtgaatt
    28141 attatcgcta atatgagtgc actcatctgt aaaatcagac atacggttgg cttcgagcaa
    28201 taattctgga aaatcaatgc gaggcatcag cttgtcgatt ttacttttca atatttttag
    28261 gctttctggt tcctcaattt tttctaatct ggataatttg attctatctt ttcccttact
    28321 gtttttcaca atctcaatcg catcattttg gggtaatctt tgcagcacat tctggtattt
    28381 atcttctaat attgaagaca ggtaaccaaa ctcctcatca aaatcaatac ttaaattgag
    28441 tgatcggcat actggaattt tatgttcatc ccaggcagca cctcttaaca atttagcgcg
    28501 agggtcacac catcgttcac taaatactac gtgcatatct cggctgcgca tattagtttg
    28561 tagatgatcc atgacacata aggtataacc tggtctatca atttccttgg tcttagggtt
    28621 gataacaata tttcgccaac cagtattaat aatatcaagt ggcgcatttt gaaatgaagg
    28681 ttttctcttc ccttctatag acgctaaaaa ttctattgct gcttgtaccg atttgccttc
    28741 tttagttgtt tggaatttaa ccgtgctaag taatgttggc aggaatcgac gtacggtttt
    28801 atattgctca agcagctcat cgtagtattt gtcatgatgg ggtttggcaa tttgcctaat
    28861 aatctctacc gcattggata ttgtatcttt agaaatagct ttgtaaatta cagctggcaa
    28921 gttttgttcc ccatcatgtt gtaaaaacaa gtcaccaaaa tcagacagct ttaatgcagc
    28981 tttatccaaa tcacccaagc tacgaatacg ttttctctca cctaatcgtt ttgctgcagc
    29041 agtaatttct gtgatcaaca tgtccaacag atctaatgca tcatcaagcg ccgtgatttc
    29101 ataaacatat gcaaatgaaa acagcactgc aatgcgtcta tcatcaggca ttcgtgcaat
    29161 cgatggtgcc catgagacag tgacatatct ggccaagtga ttaatttttg ctttgggtat
    29221 attgccaatg tttgtttgac ctaagcctaa gtcacgtatg tattgataac gttttagtgc
    29281 ctgcactaat ccagcactgc tgatatgtgt tggtccattt tttaattcat caagtttact
    29341 ataacgttta ccgtcaggta ccaacaataa gttttcgagt tgctgcctct ggttgatatc
    29401 taccaacaaa gtcagtcgct gccatagccg ttttgaaacc cggtctcgaa cttttgctat
    29461 taaaacggtc aatgtactta tgcctggtaa tagaactttt ctactgatga gccacagcgt
    29521 gcaacgttca aacaaaatgc ttggtctttc attgccatac catgcttgat catacagcca
    29581 gtgagttaat cgatagcccc agatgccgcc aagatcttta taatcaaata cagtctttat
    29641 ttcaccacaa tgatctaatc gcgttgcttt acgatccata taagatgcga gtactactgg
    29701 aagttcaatc gctaattgtt ttgcaatgta gtggacaact tgattgggca catcaattgg
    29761 gttcgcaaga aaagtaccaa ggaatctaac cgtagttaat tgtattgcat atcccagttt
    29821 attgtaatca cggcgacatg ccttgattaa ttctttgtcc ttatcatcca agtaaaaata
    29881 tttatcaagt tgatcttgtg tcagagtttc aggatatttt gcataggact gatattgctc
    29941 atcggttaaa aaatcaacag gcatgaatgt ctcataaaac gttcgtttgt taagagtgaa
    30001 aaattaattg gatataaagg ctagcaagtg tatcatctat ccatcttagg aaacaaaata
    30061 ttattttccc gatttatcat ttaattatga gaaaataaca tgccaaaatt agtaggatac
    30121 gctcgtgtta gtaagaatga tcaggatgtt caattgcaac tcaatgcact tgaagcagcc
    30181 ggatgtgcaa aaaataaaat ctttatcgat aaaatttctg gtgtacgaac tgaacgacct
    30241 ggattagata aatgtatagc ggagttagaa gcaggtgaca cactattggt atggcgatta
    30301 gaccgattgg gtcgctcaat ggcgcattta gttactttag ttgaagattt aggaaaaaaa
    30361 ggcattggat ttcgatcgct ctgcgatggt gcgattgata caactaccgc ttcgggagag
    30421 ctaattttta atattttttc ttctctagct caatttgaac gccgcttaat tcaggaaaga
    30481 acaaaggctg gattagaagc tgcacgtgcc aggggtaaaa gtggcggaag aaagaaaatt
    30541 gcatcgaata acccaaaggt acttactgct aagagcatgc ataaaaatca tgggatgagt
    30601 atcggcgata tctgtaaaac acttaaaatt tcacgtgcta gtttttatag atatctttct
    30661 ttgagtgaat agttttatta ctttggcgat taactaatcc tcaaccttaa atatacagcg
    30721 atctttcaat gtcttattat tcaataaaca aaaattggag
//
LOCUS       DACVWI010000013        30364 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.013, whole genome shotgun sequence.
ACCESSION   DACVWI010000013 DACVWI010000000
VERSION     DACVWI010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 30364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30364
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.013"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            69..596
                     /locus_tag="JBH85_02215"
     CDS             69..596
                     /locus_tag="JBH85_02215"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HAU0945001.1"
                     /translation="MVIDRAGYRLNVGIILVNDSDRVFWGRRSGHDAWQFPQGGLAPG
                     ETAMQAMYRELHEEVGLDKGDVEILGSTRRWLKYRLPKQYLRHGSEPLVIGQKQKWYL
                     LKLVTSEQKVRLDLSDSPEFDSWRWVDFHEPEQQVIFFKRQVYIQALKELEPLLKKER
                     RTPYGLKRKRGNQRA"
     gene            597..2891
                     /gene="ptsP"
                     /locus_tag="JBH85_02220"
     CDS             597..2891
                     /gene="ptsP"
                     /locus_tag="JBH85_02220"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HAU0945002.1"
                     /translation="MLKILKRIVQDVTAASDLKEALGILVQRINTAINAEAVSVYLID
                     NKNAEYVLIATEGLNKQAEFRVRIALDCGLIGLIGRREEPINIENAPSHPDFYHNPLI
                     GEDHLNAFLGVPIIQHRKLYGVLVVQQLEQRHFDDAEESFLITLAAQLGGIIAHAEAT
                     GELAELTQPKKGIGVDKVEAAYTALTGIGSVPGIGIGTAVVVYPPADIDAVPRNPVEE
                     LEDEINAFYEALETTRDDIRRLSKRMKETVAEEEHALFDVYLRILDRDSLGAEVEHVI
                     REEKISAQAALATVIKKHVQQFESMGDDYLRERASDFRDLGRRVLAELQRTQREEIVY
                     PKRTILIGEEITAAALAEVPEGQLAGVVSAKGSNNSHVAILARALGVPTVMGLRGLKV
                     ELVSRRALIVDGYYGHVYISPSKSLLAEFKQLAQEEQELNQSLVSLRDKPAETTDNYR
                     VSLQVNTGLAMDAGLSMSVGAEGVGLYRSEVPFMSRDRFPSEDEQTIIYRQTLKAFAP
                     RLVTMRTLDIGGDKILPYFPVEEENPYLGWRGIRITLDHPDVFLIQVRAMMRASEELD
                     NLRIMLPMVTTLSEVEEAVYLIEQAFEELVEEGCEIVKPKIGVMIEVPAAAYLAREMA
                     KRVDFISVGSNDLTQYLLAVDRNNARVAALYDPLHPAMLRTLLKIVEGGHAAGVEVSI
                     CGEMASDPLAVILLIAMGFDTLSMNSASLPRVKWVIRNFAIANARKILAEVLEFEHPA
                     EIRFHLQKALEEEGLGGLIRAGKS"
     gene            2888..3694
                     /locus_tag="JBH85_02225"
     CDS             2888..3694
                     /locus_tag="JBH85_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HAU0945003.1"
                     /translation="MISGELLINGVIYIIIGAFAGIMAGALGVGGGLIVVPGLVYIFQ
                     HSQVIPEDILMHVAAGCSLAVMIFTSYASLKAHNKMDEILLPLFKKLCPGLVLGTILG
                     SIMASFIPTHLLKIIFGLFLLGVAMKMLLDVRVSHTDKFPGYWLNTLVSSSIGSISGL
                     LGVGGGVIIIPYLTYCGVPVRKIAAVSNLGTFAVGLVGTIMFMVTGTLDMTKISYSTG
                     YIYWPAVLGVAIPSSLIAPFGAKLNYLLPVNYLRYGFIVILITTAIHMFL"
     gene            3712..4482
                     /locus_tag="JBH85_02230"
     CDS             3712..4482
                     /locus_tag="JBH85_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HAU0945004.1"
                     /translation="MLTYPNINPIAFSLGPLKVHWYGLMYLIGFVGAWLLGYWRIKHY
                     KLNWNNDQLSDLIFYSALGVILGGRVGYMLFYDFQEFIHHPWVLFKIWEGGMSFHGGL
                     LGVVIAAWLFCRKYGKTFLEVGDFVAPLVPLGLAAGRLGNFINGELWGRVTDVPWGMI
                     YPHVDDQPRHPSQWYEFGLEGVALFILIWCYASKPRQQGRVSALFLMGYAICRLIAES
                     FRQPDSQLGFVAFGWLTMGQVLSIPMLLIGIWLWWAKR"
     gene            4479..5273
                     /gene="thyA"
                     /locus_tag="JBH85_02235"
     CDS             4479..5273
                     /gene="thyA"
                     /locus_tag="JBH85_02235"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HAU0945005.1"
                     /translation="MKTYLQLLEHILQHGVEKSDRTGTGTLSVFGYQMRFDLAKGFPL
                     VTTKKLHTRSIVHELLWFLRGDTNISYLKENGVTIWDEWADNNGDLGPVYGKQWRSWP
                     TADGRTIDQLSEVVQQIKSNPDSRRLIVSAWNVGELDKMALMPCHALFQFYVANNKLS
                     CQLYQRSADVFLGVPFNIASYSLLTHMVAQQCNLDVAEFIWTGGDCHLYLNHLEQAQI
                     QLTREPLPLPSLAIKRKPASLFDYAYEDFEFLNYQSHPAIKAPIAV"
     gene            5349..5618
                     /locus_tag="JBH85_02240"
     CDS             5349..5618
                     /locus_tag="JBH85_02240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945006.1"
                     /translation="MKKIIVFVLLTVVCSAGFTSKLSKFLNKMDAEQKQRDAQEWQQD
                     MNFGDYAFRLKERYVDDRGQRCRDYEFRGRSNPYRHGYFTVCDER"
     gene            complement(5735..6127)
                     /locus_tag="JBH85_02245"
     CDS             complement(5735..6127)
                     /locus_tag="JBH85_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HAU0945007.1"
                     /translation="MTEINKIIHKKTFDIAWGDMDALGHVNNARYFDYFQEARIDWLR
                     ELDIKMTGQTGPVVIHVACTFLKPIVYPATVTIHSKVNSLGNSSMIMDHDLYQEETLM
                     AQGVSKIVWIDYTQNKSVPLPDIIRNLV"
     gene            complement(6124..8301)
                     /locus_tag="JBH85_02250"
     CDS             complement(6124..8301)
                     /locus_tag="JBH85_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HAU0945008.1"
                     /translation="MNDIYQVCIPHTNRDCFDYEALDLTPCIGGRVWVPFRNQARVGI
                     VINKVCDQQTGHSLKKITSIIDEKPLVPEDLLELCLWVGSYYQSPLSEVIPLVIPKKY
                     RLGLPCSLPTEDFYQLNIPVEKAKTLISKKAKKQHELIDFLSRHQKGISKQTLKQHGY
                     NGTQIAALLACQAINLSQQVTLPTKIPEKLSPPLTLNPEQAVAVDSIFEHIHHYQCFL
                     LQGVTGSGKTEVYLHVIAKILEQGKQVLVLVPEIGLTPQLLSRFTARFNHPITVLHSN
                     LNESERQIAWQLAKENKVKMVIGTRSAVFTPLPNLGLIIIDEEHDSSLKQMEGVRYSA
                     RDTALMRAHLANIPIILGTATPSLETIHNYKQKKYNLLRLTHKAASTTPLHYQLIDLR
                     SQMVQHGLALPTLKIIENHLLQQNQVLVFINRRGFAPVLLCHQCGWMVDCKACDSHLT
                     LHKQAGQMICHHCGLTQRIPLFCNNCQSKELIPVGSGTQRIYEFLSHQFPDTNVLRID
                     RDEVRKKNSLNSHLDKINKGEAQLIIGTQMLAKGHHFPRLSLVVVVDADAGFYNQDFR
                     AIEHLGQLLTQVSGRAGRAEHPGQVLIQTYLPDHPLLNLLIQHGYDEFANALLISRQE
                     AEMPPFQFLAVIRAQGKTVNKVEQFLKATKDQIQAHPLTVLGPAPAPLPRKANQHRMQ
                     LLIKSPSRKVLKSSLTQLREWLTMNKLSNGIRWNVDVDPMDLS"
     gene            complement(8302..8796)
                     /locus_tag="JBH85_02255"
     CDS             complement(8302..8796)
                     /locus_tag="JBH85_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl tetrahydrobiopterin synthase"
                     /protein_id="HAU0945009.1"
                     /translation="MKKYLTTVELQKESMKFSAGHTTIFSATEREPLHGHMYSVYLAL
                     TTWVEENGMTFDYRYYKERIHKLCRYLNQTFLMPQFSPFLEYSEDEEYYYFIFNKKKI
                     PFLKEDITLMPLTNITVEELSRWFVNELIKEKEELDNHRIEKVVVKVFSAPGQSASHE
                     WLRS"
     gene            complement(8799..9917)
                     /locus_tag="JBH85_02260"
     CDS             complement(8799..9917)
                     /locus_tag="JBH85_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HAU0945010.1"
                     /translation="MIMNLKQTLINQLKLQKEIPFIDFMQQALYAPYEGYYTSGLQKL
                     GKHGDFITAPELTSLYGKTLANQFQQILPLLDSPVLFEFGAGTGKLCIDTLTHLEQLQ
                     CLPESYFILEVSANLRHRQQELIQQKIPQLAGLIHWLDKWPEAPFNGVIIANEVLDAM
                     PVYRFMQSETEILESYVTLDEHDQLTEIFKPVQNQRLLAYIKNRLPPLDYPYLTEANL
                     FLDDWLLNCSHMLKKGALFIIDYGFPRHEYYHPDRNQGTLMCHYQHYSHPNPLLNPGE
                     QDITAHVDFTHVAEAGHQAGFHIAGYTNQASFLLANGLLSLIHTLDDEQELFAAKQAI
                     KQLTQPSEMGELFKVIALTKDLEIDLNGFLINDKRVNL"
     gene            10064..10843
                     /locus_tag="JBH85_02265"
     CDS             10064..10843
                     /locus_tag="JBH85_02265"
                     /EC_number="1.5.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pteridine reductase"
                     /protein_id="HAU0945011.1"
                     /translation="MLPYGERTLNQTNTQEAKVALVTGGAKRIGAAIVKKLHLSGYQV
                     AIHCRSALHEADILAKDLNRLRTNSAIVMQKELTEPDAAEEIISKVKHWAGRLDLLVN
                     NASAFKRTDCHLLNEADWQYLFAVNVQAPFLLSMAACPLLAPCKGSIINITDIHADKP
                     LKGYSVYCQTKAALEMQTRSLARELAPEIRVNAVAPGAIAWPENDNSLTAEAQQKIIE
                     KTPLKSHGKPDFIAQAVLALAENSFITGQTLKVDGGRSLTS"
     gene            10969..12879
                     /locus_tag="JBH85_02270"
     CDS             10969..12879
                     /locus_tag="JBH85_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945012.1"
                     /translation="MSEQYWRFKLMTEGGCNQNEATRLITVLKRKLKPFPEESINKLF
                     ENDNFCNRLSSYMAYGFGAAEEWIKKQQILSNIQPLTSEQRVDITPEKDTVSDNKPNI
                     FGAAITFGKSPVVKLLKQNAREICESILMDEPNLKQVEYIFRLLALQVQETYSGEQAE
                     KLYECIRDKKPIPSKFEEILLPIVNRIKENHTEILNESKRNHLGVTIQLNDPYSFSTK
                     NSFCIWFSNNPNSAMPKKIKDILEERAKQNAPGVTKLVYSRACLTKKENTNFVQWAKE
                     NGITLLDFDELKCQGEDLELWNLAQAELKAMREGKGGNPAAASDLVRWISGVIGDVPI
                     AYVDADMPMLTGNKSIKSEEVYAGHPVLLNMGSALVKDGVNLPMENVAFNTDIINFTG
                     ECKDRSIAIKRIAQSLIGNYLHVTERISKSGNPELKRLGLMPGYHQLLKDCEENNNKL
                     SLPMLRKALTQAHSNLSSYVRFIGVQRFAEMVGAPEDAPLFQEALQQGNTIVLTNALV
                     AYLVHGMDNVSRLNSSEKENLIKKYLGTQLSLLYKPLVMEFSGPCAVTREILPLLPTG
                     EPTRYIENLKQPDAQILRVLQTHACVAGKTNFTSDNIPNWITSSEEVERTQSLRTDGL
                     SWMPSEQARLSK"
     gene            complement(13055..14044)
                     /locus_tag="JBH85_02275"
     CDS             complement(13055..14044)
                     /locus_tag="JBH85_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase family protein"
                     /protein_id="HAU0945013.1"
                     /translation="MMHTFINSPLQIGSLKLPHRLIQGPLAGYSCAPFRDLFNIYTPP
                     AYCVSEMCSAIDILHKHSSQSRYIYRAPTEKFLAYQISGNEPHVLAEAAAKLQSLGAD
                     LIDINCGCPKSKIRKKGAGSALLEDPQKLIAIISRVRAAISIPLTIKIRIQNNEKDLT
                     LAKQIEDAGAHALIVHGRRWTEDYDIPCNWQQIANIKNAVNIPVIVNGDINNIFSLRK
                     ALEISACDGFMISRAGTGKPWLYRDLLNLETNDVAFDEKLKLFMLHLEGLSCLENEYK
                     AVLQSKSLVRYYFKKQLNEQQLQQFYQLGSLMEIKDFLAEATHRVSPILVAAS"
     gene            14090..14566
                     /locus_tag="JBH85_02280"
     CDS             14090..14566
                     /locus_tag="JBH85_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945014.1"
                     /translation="MKNQKKGRGFHMDRRYLSPLELLGIATQHAYTADYMLQQIANGM
                     YRGGETIAVFSPITSLMYVAFQLTFKAYCLHDHRPIKEYKNLMELVELNSHLGLSSND
                     IFLLKTLSRQQVFNKGVDYDLWENQQQLHVFCEEIISLYERVQSMMPLELQSDYQE"
     gene            14743..15738
                     /locus_tag="JBH85_02285"
     CDS             14743..15738
                     /locus_tag="JBH85_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HAU0945015.1"
                     /translation="MEQLDDKVADNVQQKILQLSRHLNSRILGQKDLISRLLIALLAD
                     GHLLVEGAPGLAKTRAVKELSDVVEGDFHRIQFTPDLLPGDLTGTDVYHPQNGSFVFQ
                     PGPIFHHLILADEINRAPAKVQSALLEAMAERQVTIGGKTYPLPELFLVMATQNPIEQ
                     EGTYPLPEAQLDRFLMYVKISYPDAKVEHDILTLARKEALGNATENQIKVTKLSQKTL
                     FEARKQVLKVHTSEALENYLVQLVVATRNPGVYSDELGRWLRFGASPRATIALDRCSK
                     AHAWLAGRDYVTPDDIHVIAHDVLRHRILLSFEAEAEGISSDDFIDSLLRLVAIP"
     gene            15748..16659
                     /locus_tag="JBH85_02290"
     CDS             15748..16659
                     /locus_tag="JBH85_02290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HAU0945016.1"
                     /translation="MTDGVVAELSELIDLRRYVHSVHYKPQGRALRSGNHISKFRGRG
                     MDFAEVRNYQAGDEIRHMEWRVTARTGRPHVKIYQEERERPVVLLVDFNPSMIFGTKI
                     AFKSVVAARLASLLAWTVIKQGDRVGGFFFSATEHSEFIPRGRDSGVLPLLASLSRYT
                     TQTEVQREEKPRMLSDALMRLRRVIRPGSILVLISDFYSMDVECEKHLNRLRGHNDIL
                     AYHVCDRIELAPPKPQQYAISDGKQEIILDTGLETVSTAYQLYCQQRIEQLNDQFKRL
                     QIQYVQVTADTNLTPLVRLTFPRRSRG"
     gene            16652..17137
                     /locus_tag="JBH85_02295"
     CDS             16652..17137
                     /locus_tag="JBH85_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4381 domain-containing protein"
                     /protein_id="HAU0945017.1"
                     /translation="MAKTEPLAQLRDIHLPEPVGWWPLAPGWYGLMVLIVVLVAGVAY
                     FIYKRHVNALPKKQALTLLKIHKEQYEKDKNTQLASAHISELLKRVALVYYPRAEVAS
                     MHGEAWVEFLNQTGKGIDFTPVKSMLLDSPYKTSDALNLNPLFTRAEKWIKQRGKPCS
                     N"
     gene            17101..18159
                     /locus_tag="JBH85_02300"
     CDS             17101..18159
                     /locus_tag="JBH85_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HAU0945018.1"
                     /translation="MDQAKGEAVFELATPWALSLIPVPLFLWYLLPRAKVKLPAALKV
                     PFFEAMAGIVEQENRLISAKTLLLIPVLVWVLLVIALSGPRWVGEPKPVAREGYNIMM
                     VLDLSGSMEITDMLLHGRPVSRLLVVKRAAEQFVEDRVGDRIGLILFGTRAYLQTPLT
                     YDRHSVLMRIDDATAGLAGKTTSIGDAVGLAVKRLQDVPSKGRVIILLTDGANNSGVL
                     APLKAAELAKQDGIKIYTIGLGSEADPRALTGDFFAPTLSAELDEKTLEKMAKMTGGR
                     YFRATDPESLQSIYQTINQLETVKQEQATVRPQKEYYPWFVAFALLLCFYWLISKADL
                     FVYLRSFLKVERSLSHDS"
     gene            18149..19081
                     /locus_tag="JBH85_02305"
     CDS             18149..19081
                     /locus_tag="JBH85_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HAU0945019.1"
                     /translation="MIAEFHFLRPWCLLMIVPLFALVVIYWRQKPKLHAWEAVCDPHL
                     LEHLLHSKGQSKRALSLSFLFFSILFMILSVSGPTWYKLPQSTYKPIQPRVLLLDMSD
                     KMMLGDLSPNRLSRAKFKLHDLFTRKDIGQFGLIVFTGEPFVVSPLTDDGQTISSLLS
                     ALTPDIMPVAGYNLDSALDEASQLIKQAGYDHGEILVLTAETPSSSAIEKAKKLAESG
                     IFSSIMPIRADENLNPLFQRFANAGDGYLLVYSPDSSDLEKWLNASQGKEKFALEKNE
                     DIPLWRDEGRWFLIPALLLLLPVFQRGWMQRVTI"
     gene            19078..19824
                     /locus_tag="JBH85_02310"
     CDS             19078..19824
                     /locus_tag="JBH85_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAU0945020.1"
                     /translation="MMWRVLTIVAAALISNQLKAFSWSDLWFTPNQQAQHLMEKGQFA
                     KAKDLFERNDWAASAAYRAGDYEQAAKLFNELKTEQGYYNQGNALAHLGKYEEAIRAY
                     DKALAFNPNNQDALYNRKLISELLKKDKEKKKSQNQQDKDQQNQDQQNQDKQNKDQQN
                     QDQQNQDKQNKDQQNQDQQNQDKQNKAQQNKVQNKKNDKQEGEIQSEANQEKQLAKEQ
                     WLRLIPDDPGGLMREKFLRDHLRRERGWYQ"
     gene            19812..21470
                     /locus_tag="JBH85_02315"
     CDS             19812..21470
                     /locus_tag="JBH85_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein BatD"
                     /protein_id="HAU0945021.1"
                     /translation="MVSMKKLMLWGLLSLFSSLSFAEIKVELEPSQVTMGETFKLSIT
                     QEDQQGGGVPDLTELQKDFVILGTERHVNYSIINGQAQSQSQWIVLLRALKPGIFTIP
                     PIKVGLEQSLPITINVQGSANTQALPDEAIQKQDVFLTAEVNEKNPYVNQQIIYTVKL
                     YNSKRLLDADYQGPKVDDALLIPLGDAKRYHAVHNNINYVVEEQTYAIYPQKSGTLKI
                     ISPIFNALVYDYNPQRTKATDKAINLTIKPIPKKYQGKLWLPAKQVKLSEQYENSNQT
                     LSQGSTLTRTVTLEGIGIPAQLLPTLTFQETDFFSVYPEKGAERNQVKQGELIGSVEI
                     KVTYLFNKAGKTTIPELRLTWFNTETGKEEIAVLPPRSIDIIPSTAVKANTANTQVTG
                     KEMSASSQLAPDSASVANESGGWAVKLAIFFGLAWLITLSLWIWQKRPRESSSKKEYK
                     KALDALNKACSQCNPKKARDAVLKWASLQWPDAPMLNLTDLAQLVRDAHLRKQLHLLS
                     QVLYRSQEKTLWRGDELLRAVQAVKRNESVKKRKNSNLPPINPF"
     gene            21701..23089
                     /locus_tag="JBH85_02320"
     CDS             21701..23089
                     /locus_tag="JBH85_02320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HAU0945022.1"
                     /translation="MSMHVNEYIHYDVQELAELIKNHQVGAEEVLRCAQERLYQVNPS
                     LNAVVTDCFEYAHQCLAKMKGNEPYYGVPLLVKDLGHAIEGIRLTEGSRFFSNNLAET
                     NSDLINKLIALGFVPFAKTNTSELGLSCVTDSNLFGPCRNPFDTMRTAGGSSGGSAAA
                     IMAGIAPVATASDGGGSIRIPAACCGLFGFKPTPGLVPSGPLVDEAWSGMATSFILTR
                     SMSDAIALFKNVINPMRLNRLSRKKKKLLITELTGAFAEVPIARECQEAVEKIKEILK
                     NSGHRLNEVHLPLDLQVISSCAHTLIAASTYAKIKTQEQISGRKPMIHELEPITWEFY
                     YRGKMVSAYEFIIAKNKLYQSLRPLHQLLEKTDIVLTPALAQLPLLIGHLRTDEEFNK
                     YLQKKKEFSPFTSLFNQGGLPAMTVPVMFHHHLPVSVQMGSAKGNDLLLLELAHELQS
                     VLPKNITPASIP"
     gene            23320..24828
                     /locus_tag="JBH85_02325"
     CDS             23320..24828
                     /locus_tag="JBH85_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAU0945023.1"
                     /translation="MYLIKVSCKWISPKRISMKTLPSKVIFIGAGPSGLFAARQLKEI
                     AKLQNKTVECIFLEREPVVGGKCHTYSDAAHPELKTEWGAALVAPNYGVVLDALAEHG
                     IEFEKVMPTASETIEIKQLFEKASSLEKISMEMKLLRELWAFNSDYDVYKKAKQNKKA
                     LPDQLLNPFSEYCKLNNMSYLPVLLKPFVPGFGYGDLNFCPAYCVLEYMGKVTMPDIL
                     LADQLIGRPSLLAIHGGFQLLMERIAEQFDVRTSASVSRIKREKNKVTVTYVHNGIEQ
                     TETADTLVLATSPKNWKSLGLDLTEVENNCIESLDYYRYPVAVYKIKGLPPQQYFFTK
                     ALEERGFGHLALITTRDNRSNPEDGRLCTVYVNLSPNNNEFKFDHEALRKELESIPDV
                     TEVTVVKDKIWEDYMSTLPWDLRLQLDKEQQRTNTMYLGSYALGSFEDVACVANKATD
                     AMTEWYAPTVRYEEDFSWKNMNRAWQFFTSPTKPPLASLGEPRVSDEHSNRP"
     gene            25068..25283
                     /locus_tag="JBH85_02330"
     CDS             25068..25283
                     /locus_tag="JBH85_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAU0945024.1"
                     /translation="MSVKETGHVKWFNDDKGYGFISRDNGQDDVFVHFRSIVSNAGRK
                     TLLEGQRVEFLVTKGAKGLQAEEVTAI"
     gene            complement(25383..26687)
                     /locus_tag="JBH85_02335"
     CDS             complement(25383..26687)
                     /locus_tag="JBH85_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAU0945025.1"
                     /translation="MTQQDPVVIKSKGDQALEKGDLPLALTLYDEALAINPQFSGAYY
                     QKGTVLLRMGKTIQAAAMYWQAYLFSEFKTDIGLMTAKTLAHANYSLSACKLFESFKI
                     EEMDGESLAYYLYALRQQGRVQEAYSLFPYVNQFNIPKTSWARAIILLDLNKVEEARF
                     LLEPLEKTDKDGHITILLHAVYLALNDKKAVKSLLDRAIQRIPNNDYFCCQRIAIDIL
                     NGLNKTPIETYRAFKRFDLIDAADYLHKHADKHLRHSGTTYQTFDLLAPQVLSEGLIL
                     EFGVRFGYSISHIAKLFPKRKIFGFDSFQGLPEDWHHEKAGSYSTYGKIPSVASNVTL
                     IAGWFNETLPDFKKNNREPIAFMNIDCDLYSSTKLVFNELNPQIAPGTIIVFDEYIGN
                     INWRQDEFKAFQEWVKENKVEYRYLTASFYTKQVSVQILKRK"
     gene            26817..27830
                     /locus_tag="JBH85_02340"
     CDS             26817..27830
                     /locus_tag="JBH85_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HAU0945026.1"
                     /translation="MGLPKTSQDVVMIKPITLLLLFCSFTVNASILVNGTFEATKSCP
                     AYLSKNRKSNPDNLMVEPNQKYQLKEINKTKPDWLRIQFSDHQPNLRWVSVDCGVIEY
                     TERPKASCDLSPGMADSYVLALSSQPGFCETYGYEIGKPECLKLTKTVYQANHLILHG
                     LWPNQEACGHNYGYCGISPRTNHCDYSPLDLSSDVAQNLKKLMPSYNYGSCLERHEWN
                     KHGSCQDLSTDGYFSLAMRLTTEVNNTEFGQYLTAHRGDTVKLTTLRELIKRSFGENN
                     TGKVTLSCKNGILVDIYVQLPALIPFKESLESLVDKASHSQHHDYCNSNVTISDFSNE
                     KWL"
     gene            27968..28930
                     /locus_tag="JBH85_02345"
     CDS             27968..28930
                     /locus_tag="JBH85_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945027.1"
                     /translation="MLKRCYLLILLMFVLASCAHHKPQTPPAEVKKQGTSSTRQFRQV
                     SSFNQIVVQGRLNVNLHTGYNKPEVMLRGDPRDLVQVRTIVKQNTLYVSLGQGYPDYG
                     AVTVDIKTKFLNRFRYEGAGVVTGNNLRTSYLDLYLANEGTTRLAGNIGLQKLEAVGN
                     GVTQINGVSSRNLQIVLKGDPKVLISGFVNLRQLDMYGKGTLSLYWIKSDTLTIRAKK
                     AAKIQLAGIVNRLDVELWDFAQFKGKYLRAQRSFVKTHDKSVAEISAVNHQSSLATDA
                     SDIYYYNLSKTRADFMAFNGSVLDMREWGQSDLKDFDRYNKQFP"
     gene            complement(28998..29231)
                     /locus_tag="JBH85_02350"
     CDS             complement(28998..29231)
                     /locus_tag="JBH85_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945028.1"
                     /translation="MFFYNASLKNDELNASKIAVLVTGLASLLLIGNYSDEESYEDVS
                     PSFLSRMMEDTPNYPFTSDEEGFEVNIGIPFQL"
     gene            complement(29378..30187)
                     /locus_tag="JBH85_02355"
     CDS             complement(29378..30187)
                     /locus_tag="JBH85_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAU0945029.1"
                     /translation="MTMKNEYSMKINDFRYMRRGKHLSELQSEEANLLAPVNQRGKGT
                     ERALLVLHGFSSSPAVYRYLIPNLKNYDAILCPVLAGHAESIEAFSKSKAADWLQSAK
                     SACELLINQYQKVDVLGLSLGGLLACQLSQSYAINHLFLLAPALKLHMRINAMLKLAQ
                     ILKCLGFRQLRNAAGNIITDEHAEIAYRKLPISTIIEMLTLAQGYEWLPPTCPADLFL
                     GIHDQVVASQQVEQLFCNLPNVKIHWLKNSAHVLPLDNDLNEIIDCINKSK"
BASE COUNT         9040 a         5441 c         6658 g         9225 t
ORIGIN      
        1 ttaattgtaa gctcttgtac tttgtggaaa aatcaagtta ttaacggttt attctaagca
       61 gtgacatcat ggttatcgat cgtgccggat atcgcttgaa tgtaggtatt atactcgtca
      121 acgattccga tagagttttt tgggggagac gaagcgggca tgacgcttgg caattcccgc
      181 aaggtggatt ggcaccaggc gagacggcca tgcaagcaat gtatcgtgaa ttgcatgaag
      241 aagtggggtt agataaaggt gatgttgaaa tattgggttc gaccaggcgt tggctaaagt
      301 atcgacttcc gaagcaatat ttgcgtcatg gcagtgagcc tttggtgatt ggccagaaac
      361 aaaaatggta tttgttaaag cttgtaacaa gcgagcaaaa agtcagattg gatttgagtg
      421 attctcccga attcgatagc tggcggtggg tggattttca tgagcctgag caacaagtta
      481 ttttctttaa gaggcaggtt tatattcaag cgttaaaaga attagaacct ttgttaaaaa
      541 aagaacgccg taccccttat ggcttaaaac gtaaaagagg taatcaaaga gcttagatgc
      601 ttaaaatact taaacggata gtacaagatg ttaccgctgc cagtgatttg aaagaagcac
      661 ttggcatttt ggtgcaacgt attaatacag ccattaatgc agaggctgtt tccgtttatc
      721 ttattgataa taaaaatgct gaatacgtct tgatagccac ggaaggtttg aacaagcagg
      781 cagagtttag agtcagaatt gctcttgatt gtggccttat cgggttgata ggacgaagag
      841 aggaacctat caatatagaa aatgctccct ctcatccaga cttttatcat aatccattaa
      901 ttggtgaaga tcacctgaac gcttttttag gcgtccctat tattcaacat agaaaattat
      961 acggtgtttt agttgtacaa cagcttgaac agcgtcattt tgatgatgct gaagaatcat
     1021 ttcttattac cttggcggcc caattaggcg ggattattgc tcatgcagag gcaacaggtg
     1081 aattggccga gttaacacaa cctaaaaagg gtataggagt cgacaaggta gaagcggctt
     1141 atactgcact gactggaata ggcagtgttc ctggtatagg aattggtact gccgtggttg
     1201 tgtacccgcc tgcggatatt gatgctgtcc ctcgtaatcc ggttgaggaa ttggaagatg
     1261 aaatcaatgc gttttatgaa gctttggaaa cgacaagaga tgatatcagg cgtttaagta
     1321 aacgcatgaa agaaactgtt gctgaggaag agcatgcttt attcgatgtg tatttaagaa
     1381 ttttggatag ggatagcttg ggtgctgaag tagagcatgt gattcgtgaa gagaaaatca
     1441 gcgctcaagc tgccctggct acagtgatca agaaacacgt gcagcaattt gaaagcatgg
     1501 gcgatgatta tctgcgcgaa cgagccagcg atttccgtga tttgggccga agagttttgg
     1561 cggaattaca acgtacccaa agagaagaaa ttgtttatcc gaagagaacc attttaatag
     1621 gagaagaaat tactgctgcc gctctggcag aagttccaga agggcaattg gctggtgtcg
     1681 tttcagctaa aggctccaat aactcccacg ttgctatttt agcgagagct ctcggtgtac
     1741 ctactgtgat ggggttgaga ggattaaaag tagaattggt atcgcgtcgg gctttgattg
     1801 ttgatggcta ttatgggcat gtttatatct ctccttccaa atcattatta gcggaattta
     1861 agcaattagc tcaagaagaa caggaattaa accaaagcct ggtaagcttg cgtgataaac
     1921 cagctgaaac tactgataac tacagagtct ctttgcaagt caataccgga ttggcaatgg
     1981 atgccggttt atcaatgagt gttggcgctg aaggagttgg tttataccgt tcagaagtac
     2041 catttatgag tcgagatcga ttcccttcag aagatgagca gaccattatt tacagacaga
     2101 ctctcaaggc ctttgctcca cgtttggtaa ctatgcgtac cctggatatt ggtggagaca
     2161 aaattctacc ttattttcca gttgaagagg aaaaccctta tttaggatgg cgtggaataa
     2221 ggataactct tgatcatcca gatgtcttcc tgattcaggt tcgtgccatg atgcgtgcta
     2281 gtgaggaact ggataattta cgtatcatgt tgcctatggt cactacgctt agcgaagtag
     2341 aggaagccgt ttatttgatt gaacaggcat ttgaagagct ggtggaagag gggtgcgaaa
     2401 tagtaaaacc caaaattggt gtgatgattg aagtgcctgc cgctgcttat ctggcaagag
     2461 aaatggcgaa acgagtagat tttatttcgg tgggtagtaa cgatcttact caatatttat
     2521 tggctgtgga tagaaataac gcccgagttg ccgcacttta tgatcccttg catccagcca
     2581 tgttgcgtac attgctaaaa atagtcgaag gagggcatgc agctggtgtt gaggtgagta
     2641 tttgtggcga aatggccagc gatcctttag cggtgatctt gttaattgct atgggttttg
     2701 acaccttaag catgaattcc gccagtttac ccagggtgaa atgggttatt cgtaattttg
     2761 ccattgcaaa tgcccgtaaa attctggcag aagtcttaga gtttgaacat cctgctgaaa
     2821 tacgatttca tttgcaaaag gctctagaag aggaaggatt agggggatta atcagagcag
     2881 gaaagtcatg atatccggtg agttactgat taatggagtg atttacatca ttattggtgc
     2941 ttttgcagga ataatggcgg gtgctctggg cgttggtggc gggcttattg tggtaccagg
     3001 actcgtctat atttttcaac actcgcaggt gattccagaa gatatcctta tgcatgtcgc
     3061 tgcaggttgt tcactggcgg tgatgatttt tacttcttat gcatccttaa aagcacataa
     3121 taaaatggat gagatactct tacccctttt taagaagtta tgtccgggtt tggttcttgg
     3181 tactatttta ggttccataa tggcttcttt tattccaacc catttattga aaataatatt
     3241 tggactgttc ttgcttggcg tagctatgaa aatgcttctt gatgtccgag tgagccacac
     3301 tgataaattt ccgggatatt ggctcaatac tttagtcagt agttcaatag gttcgatatc
     3361 cggtttatta ggggttggag gaggagtcat cattatccct tatctgacct attgtggagt
     3421 tccagtcaga aaaattgctg cagtatccaa tttaggcact tttgcagttg gtctagtggg
     3481 tacaattatg tttatggtta ctggcacatt agacatgaca aaaatatcgt attccacagg
     3541 atatatatat tggccagcag ttttaggggt agcaattcca agtagtttga ttgcaccatt
     3601 tggggcgaaa ttaaattatc ttttacccgt aaattattta agatatggat ttatcgtgat
     3661 tttaattacc accgcaattc atatgttttt gtgaaaggaa tttgaataac catgctcacc
     3721 tatccaaata ttaatccaat tgctttttct ttagggccat taaaagttca ttggtatggt
     3781 ttgatgtatt taatcggttt tgttggcgcc tggctactgg gttattggcg catcaaacat
     3841 tataaattga actggaataa cgaccagtta agtgatttga tcttttatag tgcccttggt
     3901 gttattcttg ggggacgagt aggttacatg ttgttttatg actttcagga gtttatccac
     3961 cacccctggg tattatttaa aatatgggaa ggagggatgt ctttccatgg tggtttgctt
     4021 ggagtggtaa ttgccgcctg gctcttttgc cgtaaatacg gaaaaacttt cttggaggtt
     4081 ggagactttg tcgcccctct agtcccttta ggtttagcgg caggtcgcct gggaaatttc
     4141 attaatgggg aattatgggg gcgtgtcact gatgttccgt ggggtatgat atatcctcat
     4201 gtcgatgatc aaccaagaca cccctctcaa tggtatgaat ttggtttgga aggggtcgct
     4261 ttatttattt tgatttggtg ttatgcgtca aagccgagac aacaagggag agtgagcgct
     4321 ttatttttaa tgggatacgc gatttgcagg ttaattgctg aaagctttag gcaacctgat
     4381 tcgcaattag gttttgtggc atttggctgg ctgacaatgg ggcaggtttt atccatccct
     4441 atgttattaa ttggaatttg gttatggtgg gctaagcgat gaaaacatat ttgcaattgt
     4501 tggagcatat tttacaacat ggggtagaaa aatcggatag aacgggcact ggaacattat
     4561 ctgtatttgg gtatcaaatg cgttttgatt tggccaaggg attcccgctt gttaccacta
     4621 aaaaactaca cacgagaagt attgttcatg aattactatg gtttttgcgt ggtgatacca
     4681 atatttctta tcttaaggaa aacggggtaa ctatttggga tgaatgggca gataataatg
     4741 gtgatttagg gcctgtctat gggaagcaat ggagaagttg gccaactgct gatggacgca
     4801 ccattgatca attaagtgaa gtagtgcaac aaataaagag caaccctgac tctcgtcgct
     4861 tgattgtaag cgcctggaat gtgggtgaat tggataaaat ggctttaatg ccttgtcatg
     4921 ccttgtttca gttttatgtt gcaaacaaca agctatcctg tcaattatat caacgctcag
     4981 ccgatgtatt tttaggagtt cctttcaata tcgcttctta ttcgttgctt actcatatgg
     5041 ttgctcagca atgtaatttg gatgtggctg aatttatatg gaccggggga gattgtcatt
     5101 tgtatcttaa tcatttggag caagcgcaaa tccaattaac aagagaacct ttgccattgc
     5161 cctccttagc tattaagaga aaaccggctt ctttatttga ctatgcttat gaggattttg
     5221 aatttttgaa ttatcaatca catcccgcaa ttaaagcgcc tatcgccgtt taattattat
     5281 cagcattgga tttttattgc caactatggt ttaatattgc ctcaattgtt tatttgaggc
     5341 tcattgctgt gaaaaaaatt atagtgtttg tattgctgac tgttgtttgt agcgcaggct
     5401 ttacgagtaa attgagtaaa tttctgaata aaatggatgc tgagcaaaaa caaagagacg
     5461 ctcaggaatg gcaacaggat atgaactttg gagattatgc ttttcgcttg aaagagcgct
     5521 atgtcgatga tcgcgggcaa cgttgccgtg attacgaatt cagaggacgc tccaacccct
     5581 atcgacatgg ttattttact gtgtgtgatg agcgttgatt tggctgaaaa tactctttct
     5641 gtatattaaa ttatcgtctg ctccttacgg tcgcagctcg gattataact aaaactgagc
     5701 cgtgaccgta agagagcgat tgtccgaata ggctctacac taaattccta ataatatcag
     5761 gcaaaggcac ggatttattt tgggtataat caatccaaac tattttactc acaccttgtg
     5821 ccataagcgt ttcttcctga tacaaatcat ggtccataat catgctggaa ttgccaagac
     5881 tatttacctt gctgtgtatg gttacagtag caggataaac gattggtttc agaaaggtac
     5941 aggccacatg aatgacaaca ggacctgttt gacctgtcat tttgatgtca agctcccgga
     6001 gccaatcaat ccgggcttcc tgaaaatagt caaaatagcg agcattgtta acatgtccta
     6061 atgcgtccat atcgccccag gcgatatcaa aagttttttt atgtattatt ttgtttattt
     6121 cagtcatgat aagtccatag gatcaacatc cacattccag cggatgccat tacttaattt
     6181 attcattgtt aaccactctc ttaattgcgt caatgaactt tttagaactt ttcttgaagg
     6241 ggatttaatt aatagttgca tcctatgctg gttagctttt cgtggtaaag gagctggtgc
     6301 aggacccagt accgtgagag gatgagcttg aatttgatct ttggttgctt ttaggaattg
     6361 ctccaccttg ttgacggttt tgccctgagc tctgatgacc gctaaaaact gaaaaggtgg
     6421 catttcagcc tcttgtcttg aaattaataa agcgttcgca aattcatcat acccatgctg
     6481 aatgagtaga ttaagcaggg gatgatcagg taaataagtt tgaatcaata cttgcccggg
     6541 atgttctgct cgccctgctc gtccagatac ttgagttaat aattgcccca aatgttcaat
     6601 agcccggaaa tcctggttgt aaaagcctgc atcagcatct acgacaacga ccagggatag
     6661 acgggggaaa tggtgtccct tggctagcat ttgagtgcct atgatcagct gagcttcccc
     6721 tttattaatt ttgtccaaat ggctgtttag agaatttttt ttacgaacct catctcggtc
     6781 aattcgtaaa acattcgtat ctggaaactg atggcttaaa aactcataaa ttctctgggt
     6841 gccagatcct acggggatta attccttact ttggcagtta ttgcaaaaca agggtattct
     6901 ttgggttaat ccacaatgat gacaaatcat ttgtcctgcc tgtttatgca aggttaaatg
     6961 gctatcgcat gctttgcaat caaccatcca tccacattga tggcaaagta acactggggc
     7021 aaagccgcgt cggttaatga aaacaagaac ctggttttgt tgcagcaaat gattttctat
     7081 gattttaagg gttgggagag ccaagccatg ctgtaccatt tgcgatcgta aatcaatcag
     7141 ttgatagtgt aacggtgtag tggaggcagc tttatgcgtt aagcgtaata aattatattt
     7201 tttttgtttg tagttgtgga tggtttccag actgggagtg gctgtaccaa gaatgatagg
     7261 aatattggca agatgagcac gcattaaagc agtatctcgc gcagaataac gcaccccttc
     7321 catttgtttg agcgaactgt catgctcttc atcgatgata attaaaccaa gattgggtag
     7381 aggggtaaaa acggcagaac gagttccaat caccatttta actttgttct cttttgccag
     7441 ctgccaggca atttgccttt ctgattcatt caaattggaa tgtaatacgg ttatggggtg
     7501 gttaaatcgg gctgtaaaac gagataaaag ctgaggggtt aacccgattt ctggtaccag
     7561 caccaatact tgtttgcctt gctccaatat tttggcaatg acatgcaaat aaacctctgt
     7621 cttaccactc ccggtaacac cttgcagtaa aaagcattgg taatgatgga tgtgttcgaa
     7681 aatggaatct acggcaacgg cttgttcagg attgagtgtt agcggtggac tgagtttttc
     7741 aggaattttg gttggcaagg taacttgctg tgacaggtta attgcttgac aagcaagtag
     7801 tgccgcaatt tgagttccgt tgtagccatg ttgttttagg gtctgtttgg aaatcccttt
     7861 ctggtgcctg cttaaaaaat caatcaactc atgttgtttt tttgcttttt tcgagatgag
     7921 tgtcttcgcc ttttcaacag gtatattcaa ttgataaaaa tcttctgtag gtagtgagca
     7981 gggtaaaccc aggcgatatt tttttggtat taccaaagga atcacttcag ataatggtga
     8041 ctgataatag cttcctaccc atagacaaag ctctaagaga tcttcaggaa cgagaggttt
     8101 ctcatcgatt attgaagtga ttttctttaa cgaatggccc gtttgctggt cacaaacttt
     8161 attgattaca atgcccactc gggcttgatt gcgaaaagga acccatactc ttccgccaat
     8221 gcatggagtt aaatccaggg cttcgtaatc aaaacaatct cgattggtat gggggataca
     8281 aacctgataa atatcgttca tttaacttct aagccattca tgactcgctg attggccggg
     8341 cgcggaaaac actttgacta ctactttttc gatacgatga ttatctaact cctctttttc
     8401 tttaatcagt tcattaacaa accagcgtga taactcttcc acggtaatat tggttaaggg
     8461 cattaaggtg atatcttctt taagaaaagg gatttttttc ttattgaaga tgaaataata
     8521 atattcttca tcttccgagt attctaaaaa aggtgaaaat tgtggcataa gaaaagtttg
     8581 atttaagtag cggcataatt tatgaatccg ctctttgtaa taacggtaat caaaagtcat
     8641 accattttct tctacccagg tagttagagc caaataaaca gaatacatat gaccatgcaa
     8701 aggctctctt tctgttgccg aaaagatggt ggtatgcccg gcagaaaact tcatggattc
     8761 tttctgtaat tccacagtag tcagatattt tttcataatt ataaattcac tctcttatca
     8821 tttatcagaa aaccatttaa atcaatttcc agatctttgg ttaacgcaat gactttgaat
     8881 agctctccca tttcactcgg ttgagttaac tgtttaatgg cctgttttgc tgcaaacagt
     8941 tcctgttcat catcaagagt atggattaag cttagcaaac cgttcgccag caaaaaagag
     9001 gcttgattag tataccctgc aatatgaaat cccgcctggt gccctgcctc agcaacatga
     9061 gtaaaatcaa catgtgcggt gatatcttgt tctcccgggt taagtaaagg attgggatga
     9121 gaataatgtt gataatgaca cattaacgtg ccttgattac gatcaggatg atagtattca
     9181 tggcgaggga agccataatc aataataaac aaagcccctt ttttcaacat atgactgcaa
     9241 tttaacagcc aatcatcaag aaacaaatta gcctcggtaa ggtaagggta atccagtggt
     9301 ggtaaacgat ttttgatata ggccaatagt cgttgatttt gtactggttt gaagatttct
     9361 gttaattgat catgttcatc cagagtgaca tagctttcca ggatttctgt ttcagattgc
     9421 ataaagcgat aaactggcat ggcatccagt acttcattcg ctattatcac tccattaaaa
     9481 ggagcctctg gccatttgtc cagccagtga atcaaaccgg ccaattgcgg gattttttgt
     9541 tgaatcaatt cttgctgacg atggcgtaag ttagcactta cttccaggat gaaatacgat
     9601 tcaggcaagc attgtaattg ttccaaatga gttaatgtat caatacagag ctttccagtt
     9661 ccggccccaa actcgaatag tacgggggag tccagcaagg gaagaatttg ttggaattgg
     9721 ttggctaaag ttttgccata caaggaggtt aattcaggag cagtgataaa atcaccgtgt
     9781 tttcctagtt tttgcagtcc tgaagtataa tagccttcat agggggcata gagtgcttgc
     9841 tgcataaagt ctataaaagg gatttctttt tgcagcttta actggtttat tagagtttgt
     9901 tttaaattca taatcactta aactatcgtt agatttcttt taaactcgct gtgaacaaga
     9961 gggtgcgagg agaaacaaag aaaatactga agtgtacaca ataatacttg aggattcgag
    10021 catcctggct gattactttt tgcagtgagg ttgcgaaagg agtctgttac catatgggga
    10081 acgtaccttg aatcagacaa acacgcaaga agccaaggtt gctttagtga ctggaggcgc
    10141 taaacgtatc ggcgcagcaa ttgttaaaaa attacatctc tctggatatc aggtagccat
    10201 ccattgtcgt tctgctttgc atgaagccga tattctggcc aaagatttga atcggttgcg
    10261 tacgaatagc gccattgtca tgcaaaaaga attaactgag cctgatgcag cagaagagat
    10321 catatccaaa gtgaaacatt gggccggtcg tttggatttg ctagtgaata atgcttctgc
    10381 ttttaaacga acggattgcc atttattgaa tgaggcagac tggcaatatc tgtttgcagt
    10441 gaatgtccag gctccctttc tactgagtat ggcagcttgt cctttactgg ctccatgcaa
    10501 gggttccatt attaacataa ctgatattca tgcagataag ccacttaaag gatattcggt
    10561 atattgtcaa actaaagccg cattggagat gcaaacgagg tcgcttgctc gtgagctagc
    10621 accagaaata agagtcaatg ccgttgcgcc tggcgccatt gcctggcctg agaatgacaa
    10681 tagtttaact gcggaagcac aacaaaaaat tatcgagaaa acaccgttaa aaagccatgg
    10741 caaacccgat tttattgctc aggctgttct tgctctggct gaaaattcat ttatcactgg
    10801 tcaaacattg aaagtagatg gaggtagaag tttgacaagc taaaattttt cgtaaatcct
    10861 gaatcattgg atctactgca ttttaggtta ttaactgttc tttgtgattt gttttaaccc
    10921 actttactgc ttataatata accaaattgg cgtctatttg gagatattat gagcgaacaa
    10981 tattggcgtt tcaaattgat gactgagggt ggatgtaatc aaaatgaagc aaccagactt
    11041 ataaccgttt taaaacgtaa gttgaagcca ttccctgagg agtcaatcaa taaattattc
    11101 gaaaacgata atttttgtaa tcgactttcc tcttacatgg catatggatt tggggcagca
    11161 gaagaatgga taaaaaagca acaaatatta agtaatatcc aaccgttaac ttctgaacaa
    11221 agagttgata tcacaccaga gaaggatacg gttagtgata ataagccgaa tatctttggc
    11281 gctgcaatta catttggaaa atcacctgta gtgaagcttc ttaagcaaaa tgccagagaa
    11341 atatgcgaat caattttaat ggatgaacca aatctaaaac aggtcgaata catcttcagg
    11401 ttattggcac ttcaagtcca agagacttat tcaggtgagc aagctgaaaa gttatacgaa
    11461 tgtattcggg ataaaaagcc aataccctca aaatttgagg aaatattgct cccaatagtg
    11521 aatcgtatta aagagaacca tacagaaatc cttaatgaat ctaaaaggaa tcacttggga
    11581 gtaactattc agttaaacga tccctatagt ttttcaacaa aaaattcttt ttgtatttgg
    11641 tttagtaata atcctaacag tgccatgcca aaaaaaatta aggatatttt ggaagaaaga
    11701 gccaaacaaa atgcaccagg agtaacaaaa ttagtttata gccgagcttg tttgaccaag
    11761 aaagaaaata ctaattttgt tcagtgggca aaagagaatg gtattacatt attagatttt
    11821 gatgagttaa aatgtcaggg cgaggattta gaattatgga atttggcaca ggccgagtta
    11881 aaggcgatgc gtgaaggtaa aggagggaat cctgctgctg cctctgatct ggtgcgatgg
    11941 atatcaggtg tcataggaga tgttcccata gcctacgttg atgccgatat gccaatgctt
    12001 actggtaata aaagcattaa gtctgaagag gtttatgcgg gacatcctgt gctattaaat
    12061 atgggatctg cattggttaa agatggggtt aatttgccca tggaaaatgt tgcatttaat
    12121 acggatatta tcaatttcac tggtgaatgt aaggatagaa gcattgccat taaacggatt
    12181 gctcaatcgc tgattggcaa ctacctccat gttacagagc ggatttctaa gagtggtaat
    12241 ccagaactca agagacttgg cctgatgcca ggctaccatc agcttttgaa agattgtgaa
    12301 gaaaacaaca acaagttgtc tctaccgatg ttacgaaaag cattgacaca ggctcacagt
    12361 aatttgagtt cttatgtaag atttattggc gtacagcgat ttgctgaaat ggttggtgcg
    12421 ccagaggatg ccccattatt ccaggaagca ttacaacaag gtaataccat tgtcttaaca
    12481 aatgcattag tggcttattt agttcatggt atggataacg tatcaagatt aaactcatct
    12541 gaaaaagaga atttaattaa gaaatatttg ggcactcagc tttctttatt atacaaaccc
    12601 ttggtgatgg agttctctgg gccctgtgca gtaactcgtg aaatactacc gctattacct
    12661 actggtgaac caacacgtta tattgaaaac ctcaaacagc ctgatgcaca aattttacgt
    12721 gtattgcaaa cgcatgcctg tgtggctggg aagactaatt ttacttccga taatattcca
    12781 aattggataa cttcctcaga agaagttgag cgtacacaat ccctgcgaac ggatggcttg
    12841 agttggatgc ctagtgagca agcacgatta tcaaaataag tttaattgaa taagtataac
    12901 ttctattaaa aaactcataa tccttggatt agatagtctt gtaatccaag gaagttctcc
    12961 tcataaccct ttaatcttca gcgtgagctg aactaaacag cggaatgtaa tggttatcaa
    13021 attatagaaa taatatacaa atcctgacct tatatcatga ggcggcaact aatatggggg
    13081 aaactcggtg agttgcctca gctaaaaaat ccttgatttc cattaatgaa cctaattgat
    13141 agaactgttg cagttgttgt tcgttcagtt gctttttgaa gtaatagcga accagggact
    13201 tgctttgcag taccgcttta tactcgtttt caaggcatga caatccttcg aggtggagca
    13261 taaacagttt taatttctca tcaaaagcga catcatttgt ttccagattc aataaatccc
    13321 gatatagcca gggtttgccc gtacctgctc gagaaatcat aaaaccatcg cacgcgctga
    13381 tttccagggc ctttcttaaa ctgaatatat tgttaatatc accatttaca atgactggta
    13441 tattgacagc attcttgata tttgcaattt gctgccaatt gcatgggata tcataatctt
    13501 ctgtccatcg cctgccatgc actatcaggg catgagcacc agcgtcctct atttgtttgg
    13561 ctaaggttaa atccttttca ttgttttgaa tgcgtatttt aatagtcagc ggaatgctga
    13621 tcgctgcgcg taccctagag ataatggcaa tcaatttttg tggatcttcc aataaagcgc
    13681 taccagcccc ttttttacga attttgcttt tagggcagcc gcaattaata tcaattagat
    13741 ccgcacccag tgattgcagt ttagctgctg cttctgcaag gacatgtggc tcatttccgg
    13801 agatttggta agccaggaat ttttctgtgg gagctctgta aatataccgg gattgagagg
    13861 aatgtttatg aagaatgtcg atggcagaac acatttcaga aacgcaataa gcaggcggtg
    13921 tataaatatt gaatagatct ctgaaagggg cgcaactgta tcctgccaaa ggtccttgaa
    13981 tcagtcgatg agggagtttt aaagagccga tttgcagagg actgttaata aaagtgtgca
    14041 tcaatggaat taaaggctat aatcgctttt tattttaaca tgattcatca tgaagaacca
    14101 gaaaaaaggg agaggcttcc atatggacag gaggtatttg tcacctttgg agctgctagg
    14161 cattgctacg caacacgcct atacagcaga ttatatgttg cagcaaattg ccaatggaat
    14221 gtatcgaggt ggggaaacca tcgcagtttt ttctccaatc acttcactca tgtacgttgc
    14281 ttttcagcta accttcaaag cttattgttt gcatgatcat agaccaataa aggaatataa
    14341 aaatctgatg gaattggttg agttgaatag tcatcttggt ttatccagca atgatatttt
    14401 tcttttaaaa actttatcaa gacagcaagt gtttaataaa ggagtagatt acgacctttg
    14461 ggaaaatcag caacaattgc atgttttttg tgaggaaatt atttcattgt atgagagagt
    14521 gcagtcgatg atgcctctgg agttgcaaag tgactatcag gagtaaccgg ctgaattagc
    14581 gccctgttaa gtgtctttgc ttaagtttcc ttatgttgtg catagcccaa gatgcattaa
    14641 tcagatatca aaatgattta tttttatcca aaatagactc attctacttg gcatcccaat
    14701 ggattcaagt taggatatta tttttttaaa agggtaattg ttatggagca actagacgat
    14761 aaagtcgcag ataatgtgca acaaaaaata ctacagttaa gtcgtcatct taattcgcgt
    14821 attttgggtc aaaaggattt gatctctcgt ctgttgatcg ctttgcttgc agatggccat
    14881 ttgttggttg aaggagctcc gggtttagca aaaaccagag ccgttaaaga attgtcagac
    14941 gtagttgaag gtgattttca tcggattcaa ttcacccccg atctgctacc tggggactta
    15001 actggtacgg acgtctacca tccgcaaaat ggttcttttg tctttcagcc cggccctata
    15061 tttcatcatc ttatcctggc tgatgagatc aaccgcgccc ctgccaaagt acagtcagcc
    15121 ctgcttgaag cgatggcaga aaggcaagtc actattggag gaaaaactta tcctctgcca
    15181 gaattgtttc tggtcatggc aactcaaaat cctatagaac aagaaggaac ttatccttta
    15241 ccagaagccc aattggacag atttttaatg tatgtgaaaa ttagttaccc tgatgcaaaa
    15301 gtagaacatg acattttaac tttggcacgt aaagaagcac tgggtaatgc aacagaaaat
    15361 caaatcaaag tgacgaaatt gtcccaaaaa actttatttg aagctcgaaa acaagtattg
    15421 aaagtacata ccagtgaagc acttgaaaat tatctggttc agttggtagt tgctacccgt
    15481 aatcccggag tatacagtga cgaattggga cgctggttgc gttttggggc aagcccacgc
    15541 gctactatcg cactggaccg ttgttccaag gctcatgcct ggcttgcagg tagagattat
    15601 gtgactcccg atgatataca cgttatcgct catgatgtac tgcgccacag gattttgtta
    15661 agttttgaag cagaagcaga aggcattagc agcgatgact ttatagactc tttattacgt
    15721 ttagtcgcca tcccttagag gttttttatg actgacggag ttgtagctga attaagcgaa
    15781 ttaatcgatt taagacggta tgttcattcc gttcattata agccgcaagg aagagcgttg
    15841 cgttctggaa accatatttc caagtttcgt ggacggggaa tggattttgc ggaagtaagg
    15901 aattatcagg ctggtgatga aattcgtcat atggaatggc gcgttactgc gcgtactgga
    15961 aggcctcatg tcaaaattta tcaggaggag cgggaaaggc cagtggttct gcttgtagat
    16021 tttaaccctt ccatgatttt cggtaccaag atagcattta agtcagtggt agctgcacga
    16081 ttggcttctc ttttagcatg gacagtgata aaacaaggag atcgggtagg aggattcttt
    16141 ttttcagcta cagaacacag tgagtttatt ccgcgaggac gagattcggg cgtactccct
    16201 ttattggctt ctttaagtcg atataccact caaacagagg ttcagcgaga agaaaagcca
    16261 cgtatgttaa gtgatgcctt aatgaggctg cgtcgggtta ttcggcctgg aagtatactt
    16321 gttttgataa gcgattttta ttctatggat gttgagtgtg agaagcattt aaatcgttta
    16381 cgaggccata atgacatact ggcctatcat gtttgtgaca gaattgaact ggctcctcca
    16441 aaaccgcaac aatatgccat tagcgatggt aaacaggaaa tcatattaga cactggcctg
    16501 gaaactgtta gcacagctta tcagctctat tgccagcaga gaattgagca gttaaatgat
    16561 caatttaagc ggttgcaaat tcagtatgtc caggtgactg ctgataccaa tctcactcca
    16621 ctggtgcgct tgacctttcc ccggaggtct cgtggctaaa acagaaccat tagctcaatt
    16681 acgagacatt catttgcctg agcctgttgg ctggtggcct cttgcgccag ggtggtatgg
    16741 cttaatggtt cttatcgttg ttttagtggc aggggttgcc tatttcattt ataaaaggca
    16801 tgttaacgca ttacccaaga aacaagcctt aactttatta aaaatccaca aagaacagta
    16861 tgaaaaagat aaaaacactc aattggccag tgcccatatt tctgaattgc taaagcgagt
    16921 tgccttggtt tattatccaa gagcagaagt cgctagtatg catggtgaag cttgggttga
    16981 atttttaaat cagactggca aggggattga ttttactccg gttaaatcga tgttattgga
    17041 ttcaccctat aaaacatcag atgcactgaa tttaaatcct ttatttactc gtgcagaaaa
    17101 atggatcaag caaaggggga agccgtgttc gaattagcta ccccatgggc tttgtcactt
    17161 attcctgtcc ctttgtttct ctggtatttg ttaccgcggg caaaagtaaa attacctgct
    17221 gcattgaagg ttcctttttt tgaggcaatg gcaggtattg ttgaacaaga gaaccggcta
    17281 atctcggcta aaacgctgct attaattcct gttttagttt gggtattgct ggttatcgcc
    17341 ctttctggtc cgcgatgggt tggtgagcca aagcctgtag caagggaagg atataatatc
    17401 atgatggtat tggatctttc aggcagcatg gaaattacgg atatgctact gcatggccga
    17461 ccagtcagtc gtttgcttgt cgtgaaaagg gctgcagagc aatttgttga ggacagagtc
    17521 ggagatagaa tcggtttgat tctgtttggt actcgagctt atttgcaaac accattaacc
    17581 tatgacagac atagcgtact aatgaggata gacgacgcaa cagctggtct tgcaggtaaa
    17641 actacttcga ttggtgatgc agtaggttta gccgtcaaaa ggttacaaga tgttccttcc
    17701 aaaggaagag ttattatttt gctgacggac ggagcaaaca actcaggtgt attagccccc
    17761 ttaaaagcag cagagttagc caagcaagat ggaatcaaaa tctatactat aggcttaggt
    17821 tcggaggcag atccaagagc gttaactggt gatttttttg cccccaccct ttccgccgaa
    17881 ctggatgaaa agacattgga aaaaatggca aaaatgacag gtggtcgtta tttcagggcg
    17941 acagatcctg agtctttaca atccatatac caaaccatca atcaactgga aaccgtgaag
    18001 caagaacagg caactgttcg gcctcaaaag gaatattatc cctggttcgt tgcctttgct
    18061 ttgttattat gcttttattg gttgattagc aaggcggatt tatttgtgta cttaaggtct
    18121 tttttaaaag tagagcggag cttaagtcat gatagctgag tttcattttt taaggccatg
    18181 gtgtttgttg atgatagtgc ctttgtttgc gttggtggta atttattggc ggcaaaaacc
    18241 aaaattacat gcctgggagg cggtatgtga tccccatctt ctggaacatt tattacacag
    18301 taaaggtcag agtaaacgtg ccttatcttt atcattcctg ttttttagta ttttatttat
    18361 gattttgagt gtgtctggtc caacttggta caaattgcct caatctactt ataagccaat
    18421 tcagccaagg gttttgttat tggatatgtc agataaaatg atgcttgggg atttatcgcc
    18481 aaatcgtctt agtcgggcta aattcaaatt gcatgattta tttacccgca aggatatagg
    18541 gcagtttggt ttgattgttt tcacaggcga accttttgtt gtatctcctt taacagacga
    18601 tggtcaaact atctcttcct tattgtcagc cttgacccct gatatcatgc ccgttgcagg
    18661 atataattta gacagtgcct tggatgaagc aagccaatta attaagcaag cgggttatga
    18721 ccatggcgaa attttagttt taaccgctga aacaccgtcc tctagcgcta ttgaaaaagc
    18781 taaaaagctg gcagaatcag gtattttttc ttcaattatg ccaatcagag ctgatgaaaa
    18841 tttgaacccc ttgtttcagc gcttcgccaa tgcgggagat ggatacttgt tggtatactc
    18901 accagattca agtgatttgg aaaagtggtt gaacgcctct caaggcaaag aaaaatttgc
    18961 tcttgaaaaa aatgaagata tcccattatg gcgtgatgaa ggccgctggt tcttgattcc
    19021 cgcattgctt ttattattac ccgtatttca gcgaggttgg atgcaaaggg tgacgatatg
    19081 atgtggcggg ttttaactat tgtggcagct gcactaatat ccaatcaact taaggcattt
    19141 agttggtctg atttatggtt tactcccaat caacaagctc aacatttgat ggaaaaggga
    19201 caatttgcaa aagctaaaga tctttttgag cgcaatgact gggctgcaag cgcagcatac
    19261 agagcaggag attatgaaca ggcagccaaa ttattcaatg agttaaaaac ggaacaaggc
    19321 tactataatc agggaaatgc tctagcacac ttagggaaat atgaggaagc aatacgagca
    19381 tatgacaaag ccttggcatt taatccaaat aatcaggatg ctttatataa tcgaaaatta
    19441 atcagtgaat tgttgaagaa agataaagaa aagaaaaaaa gccagaatca gcaggataag
    19501 gatcaacaga accaggatca acaaaatcag gacaagcaaa acaaagatca acagaaccag
    19561 gatcagcaaa atcaggacaa gcaaaacaaa gatcagcaga accaggatca gcaaaatcag
    19621 gacaagcaaa ataaggcaca acagaataaa gttcaaaata aaaaaaatga caagcaagag
    19681 ggagaaattc agtccgaagc gaatcaggag aaacaacttg ctaaagaaca atggttgcga
    19741 ttaatacctg atgatccggg tggattaatg agagaaaaat ttttacgtga tcatttacgt
    19801 agagagcgtg ggtggtatca atgaagaaat taatgttatg gggtttattg agtttatttt
    19861 catcattatc ttttgcagaa atcaaagttg aacttgagcc ttcgcaagtc acaatgggag
    19921 aaacctttaa attatccatt actcaagaag atcaacaggg gggcggagtt cccgatctga
    19981 ctgaattgca aaaggatttt gtgattttgg gtacagaaag gcatgtaaac tattccatta
    20041 ttaatgggca ggcgcaatca caaagtcaat ggattgtact cttgagagcg ctaaagccag
    20101 gtatttttac tattcctcca ataaaagtag gtcttgaaca aagtctgcca atcactatca
    20161 atgtccaggg tagtgccaat acacaagctt tgccagatga ggctatacaa aagcaggacg
    20221 ttttcctgac agctgaagtg aatgagaaaa acccctatgt taaccaacaa attatttata
    20281 cggtcaaatt atacaatagc aaacgattgt tagatgccga ttatcaaggt ccaaaagttg
    20341 atgatgcctt gctgattccg ttaggggatg cgaaacgtta ccatgctgtt cataacaaca
    20401 ttaattatgt tgttgaagag caaacttatg cgatatatcc gcaaaaaagt ggcactttga
    20461 aaatcatatc accgattttt aatgctcttg tatatgacta taacccccaa cgcaccaaag
    20521 cgacggataa agcgattaac ttaactatca agccaatccc taaaaagtat caaggcaaat
    20581 tatggttgcc agcaaaacag gttaagttat ccgagcaata tgaaaacagt aatcagactc
    20641 tcagtcaggg aagtacgtta acacgtacag tgacattgga aggaataggc attccagctc
    20701 agttattgcc aacacttacc tttcaagaaa cagatttctt tagcgtttat ccagagaaag
    20761 gggcggaacg caatcaggtt aagcaaggtg agctaattgg cagtgtcgaa atcaaggtca
    20821 cttatttgtt caacaaagca ggcaaaacga caatacccga attgcgtctt acctggttta
    20881 atactgaaac aggtaaagaa gaaatcgctg ttttacctcc aaggagcata gatatcatcc
    20941 cttctactgc ggtcaaggca aatactgcaa acactcaagt cacaggtaaa gaaatgtctg
    21001 ccagcagtca attagcgcct gattctgcat cagttgccaa tgaatcagga ggttgggctg
    21061 tgaagttggc aatatttttt ggtttggcct ggttaatcac tttaagctta tggatatggc
    21121 aaaagcgacc gagagagtca tccagtaaaa aggagtataa aaaagctttg gatgctttaa
    21181 ataaagcttg tagtcaatgt aatcccaaaa aagctcgtga tgctgtttta aaatgggcct
    21241 ctttgcaatg gcctgatgct ccaatgctta atttaactga cttggcgcaa ttggtaagag
    21301 acgcgcattt aaggaaacaa ttgcatctgc tttcgcaagt cttgtaccga agtcaggaaa
    21361 aaacattatg gcgcggggat gaattattgc gggctgtgca agcggtaaaa cgtaacgaat
    21421 ctgtgaaaaa gcgaaaaaac agtaatttac ctcctattaa tccattttag aaattaaatc
    21481 tgtttaagcg gtggtttttg ccagttattc ctttactgtc aatatggaca acttatttat
    21541 cctctttttt ctgtaatcac gggactactg ccagattgta tgccgtcata atttggctaa
    21601 gctggctcag gcgactatga taacaacagc tataatgtta tagataacct tgtaaagagt
    21661 aatgttctct ctttataaag ctctctggct attgtaggaa ttgagtatgc atgttaatga
    21721 gtatatccac tatgatgtgc aggagcttgc tgaactgatc aaaaaccatc aggttggtgc
    21781 tgaggaagtt ttgcggtgtg cgcaagaacg cctatatcaa gtgaatcctt cattaaatgc
    21841 cgtagttaca gattgttttg aatatgcgca tcaatgcctt gctaaaatga aaggtaacga
    21901 gccctattat ggtgttccgt tattagtcaa ggatctgggc catgccatag agggcattcg
    21961 actaacggaa gggtcaaggt ttttttcaaa taatctggct gagacaaaca gtgatttgat
    22021 taataaattg attgctcttg gttttgtacc atttgcaaaa acaaatactt cagaattagg
    22081 cctttcctgc gttactgact ctaatttatt tgggccttgc agaaatcctt ttgatactat
    22141 gagaacggca ggcggatctt ctggtggttc tgctgctgcc ataatggcag ggatagcgcc
    22201 tgtggctacg gcaagcgatg gaggcgggtc gattcgtatt ccagcggctt gttgtggttt
    22261 gtttggattc aaaccgacac caggtctggt tccctcaggg ccattggttg atgaagcatg
    22321 gtccgggatg gctaccagtt ttatactaac tcgttccatg agtgatgcta ttgcattgtt
    22381 taaaaatgta ataaacccca tgcgacttaa cagactatcg agaaagaaaa aaaaattact
    22441 tattaccgag ttgacaggcg cttttgcaga ggtaccaatt gcaagggaat gccaggaggc
    22501 ggtagagaaa ataaaagaaa tcctgaaaaa ttcaggtcac agattaaatg aagtgcactt
    22561 gccattggat ctgcaagtta tcagttcatg cgcccatact ttaattgcag cgagcacgta
    22621 tgcgaaaata aaaactcaag aacaaatcag tggcagaaaa ccaatgattc atgaattgga
    22681 acccataaca tgggaatttt attacagagg aaaaatggtc tccgcttatg aattcattat
    22741 tgccaaaaac aaactatatc aatcactaag acctctgcat caattattgg aaaaaacaga
    22801 cattgtatta actcctgcat tggctcaatt acccctgtta atcggtcatt tgcgcactga
    22861 tgaggaattc aataagtatc tacaaaaaaa gaaagagttt tcacctttta cttccctgtt
    22921 taatcaaggt ggcttacccg ctatgactgt accagttatg ttccaccatc atttgcctgt
    22981 ctctgtgcaa atgggttcag caaaaggcaa tgatttgctc ttattggagt tggctcatga
    23041 attacagtct gtgctgccaa aaaatatcac gcctgcatca attccttgat gctgattttt
    23101 tgtaagtttt catttatcga accttgtgtt aagttaactg tagcttttca taaaattaat
    23161 aataagtgat tgttttttta tagctatagt cacttgaatt ttaaataatc gattctctac
    23221 gtactgctgc ttaacgcggt ttttaaaaat caagtcacta tatatttttt caacttcagg
    23281 gcattttgcg taggcagtaa atagttccag tttgagtagt tgtatttaat aaaggtaagt
    23341 tgtaaatgga tttcaccaaa gaggatttca atgaagacct taccatccaa agtcattttt
    23401 ataggggcag gcccgagcgg cttattcgct gcacgccaat taaaggaaat agcaaaatta
    23461 caaaataaga cagtagaatg tatattcctt gaacgtgaac ccgtagtggg cggcaaatgc
    23521 cacacctact cggatgcagc tcatcctgag ttaaaaacgg aatggggagc cgcattggtt
    23581 gctcccaact atggtgttgt tcttgatgca ttagctgagc acggcattga atttgaaaag
    23641 gtaatgccaa cagcttctga aacgatagaa atcaagcaat tatttgaaaa agccagttcg
    23701 ttagaaaaaa taagcatgga aatgaagttg cttagagaat tatgggcttt taatagtgat
    23761 tatgatgttt ataaaaaggc aaaacaaaat aaaaaagcac ttccagatca attgttaaac
    23821 cccttttctg aatattgtaa gctgaacaac atgtcttatt tacctgtcct tttaaagcca
    23881 tttgtgcctg gatttggtta cggggattta aacttttgtc cggcttattg tgttcttgag
    23941 tatatgggca aggtcaccat gccggacatc ctcttagccg atcaattaat tggcaggccc
    24001 tcactattag caatacatgg cggttttcag cttttaatgg agagaatcgc ggaacaattt
    24061 gatgtgcgta ccagtgcttc tgtttccagg attaagagag aaaaaaataa ggtgactgtg
    24121 acttatgtgc ataatggtat cgagcaaaca gaaacagccg atactttggt tttggcgact
    24181 tcaccaaaaa actggaaatc tctgggttta gacttaactg aagttgaaaa caattgtata
    24241 gagagtctgg attattatcg ctatcctgtt gctgtttata aaatcaaagg attgccgccg
    24301 caacagtatt ttttcacaaa agcacttgag gaaaggggct ttgggcattt ggcgcttatt
    24361 acaaccaggg ataacaggag taatccggaa gatggacggt tatgcacggt ttatgtgaat
    24421 ttatctccca ataataatga atttaaattt gatcatgaag cgctaagaaa agaattagag
    24481 tctatcccgg atgtaactga agttacggtt gtaaaggata aaatctggga agattatatg
    24541 tcgactcttc cctgggattt gcgattgcaa ttggataaag agcaacagcg cacgaatact
    24601 atgtatttgg gctcttatgc tctgggaagt tttgaagacg tagcctgtgt ggcaaataag
    24661 gcaaccgatg ccatgacgga atggtatgct cccactgtga ggtatgaaga ggatttcagc
    24721 tggaaaaata tgaatagggc ctggcagttt tttacatcgc caacgaaacc gccactcgct
    24781 tcgttgggtg agcccagggt gtcggatgag cacagtaaca ggccatagac ggtaagataa
    24841 aagtggtaca tttatcgaag atattgtaca taatgctcgc tatttgtaga atagtatatt
    24901 ataatataat tacttgttct acgagcatta ttggttaaaa tcttgttttt cgacaaactc
    24961 cttccttata tttcccttgg tcgtgaattt ctcatcgatg attacattgt attttttctc
    25021 ttatcgctca ttacaagtgt ttgtttaatt ttatttggaa ctttgaaatg tctgtgaaag
    25081 aaactggcca cgttaagtgg tttaatgatg ataaaggtta tggcttcatt agtcgtgata
    25141 atggtcaaga cgatgtattt gtacacttcc gctctatcgt tagcaacgct gggcgcaaaa
    25201 ctttgctaga gggacaacga gtggagttcc ttgttactaa gggagcgaaa ggtttgcaag
    25261 cagaagaagt aactgctata taatcccgta ttcactgaat taccttcctc tttgtctaaa
    25321 aaaacgaaga ggaaggtggt tttttaatgc caataaattg cattaatttt ttcaattatt
    25381 tttcactttc tcttaagaat ttgtaccgag acctgtttgg tataaaagct ggcagtaaga
    25441 taacgatatt ccactttatt ttcttttacc cattcttgga aagctttaaa ttcatcctgg
    25501 cgccaattga tattaccaat gtactcatcg aatactatga tagtacctgg tgcaatctgg
    25561 gggtttaatt cgttgaacac caattttgtg gaagaataga gatcacaatc gatattcata
    25621 aaagctatgg gttccctgtt atttttttta aaatctggca aagtttcatt aaaccatcca
    25681 gcgattaaag tcacattact tgctacggag ggaattttac cataggtgga ataagagcca
    25741 gccttttcgt ggtgccaatc ttcaggtaac ccttgaaaac tgtcaaaacc gaaaattttg
    25801 cgtttgggaa agagtttggc aatatgggaa atggaatagc caaatcgcac tccaaattcc
    25861 agtattaagc cttcagaaag aacctgtggt gctaataaat caaatgtttg ataagttgtt
    25921 ccactatgtc gcaaatgttt gtcagcatgt ttatgaagat aatcagctgc atcaatgaga
    25981 tcaaagcgtt tgaatgcgcg atacgtttct atcggtgtct tgtttaaacc attgagtatg
    26041 tctattgcaa ttcgctggca gcaaaaataa tcattattgg gtatgcgttg aattgctctg
    26101 tctaaaagag attttactgc ttttttatca tttaaagcca gatataccgc atgcagtaaa
    26161 atggtgatgt gtccatcttt atccgttttt tcaagtggtt caagtaagaa gcgcgcttcc
    26221 tctactttat taaggtcaag caaaataatg gctcttgccc aacttgtttt ggggatattg
    26281 aattggttta cataagggaa caaggaatac gcttcttgta cccttccttg ttgccttaga
    26341 gcatagaggt aataggcgag gctttcaccg tccatttctt caattttaaa tgattcaaaa
    26401 agcttgcagg ctgacaaaga ataattagca tgcgccagag tttttgctgt cattaatcct
    26461 atgtcagttt tgaattcgct gaataaataa gcttgccagt acatggctgc tgcttgtatt
    26521 gttttaccca tgcgaagtaa aacggttcct ttttgataat aggctccgga aaattgtggg
    26581 tttatcgcta atgcttcatc atacagtgtt aaggcaagag gcaaatcccc cttctctaaa
    26641 gcctggtctc ccttggattt aatcactaca ggatcttgtt gggtcattta ttttctccag
    26701 tacctacctc tatatcatag tattctttta ttcggaatgt agttgtattg aaaaaatcct
    26761 tattaatcaa tttcatgaaa aaataattgc tggcattcat atccgactag ggtataatgg
    26821 gcttaccaaa gacaagccag gatgtcgtaa tgataaaacc aatcaccctg cttttgcttt
    26881 tttgttcttt cactgttaat gcctcaattc tcgtcaatgg tactttcgaa gcaacaaaat
    26941 catgccctgc ttacctttcc aagaatcgta aatcaaatcc tgataatttg atggttgagc
    27001 ccaaccagaa atatcaatta aaagaaatta ataaaaccaa accggattgg ttgcgtatac
    27061 aattttcaga tcatcaacct aatctgcgct gggtgagtgt tgattgcggg gtcattgaat
    27121 acactgagcg tcccaaagcg agctgtgatc tttctcccgg gatggctgat tcttatgtgt
    27181 tggctttaag ttcacagcca ggtttttgtg aaacttatgg atatgaaata ggcaaaccag
    27241 agtgtttgaa attaacaaag acagtttatc aggccaatca tctgatcctg catggattat
    27301 ggcctaatca agaagcatgc ggccataatt atggctattg tggaataagc cctcgaacaa
    27361 accattgtga ttattctcca ttggatttat cttctgatgt tgctcaaaat ttaaagaaac
    27421 ttatgccgag ttacaattat ggcagttgtc tggagcgcca tgaatggaac aaacatggga
    27481 gctgtcagga tttaagcacg gatggttatt ttagtttggc tatgcgcttg actacagaag
    27541 ttaataatac agagttcggt caatatctta ccgctcatcg tggtgatact gtaaaattga
    27601 ctactttgcg tgaattgatt aaaagatctt tcggggaaaa caatacaggt aaagtgactt
    27661 taagttgcaa gaatgggatc ttggtggata tttatgtcca attacctgct ctcatacctt
    27721 ttaaagagtc tctagagtct ttggttgata aagccagcca ctcacaacac catgattatt
    27781 gtaatagcaa tgtcaccatt tctgatttta gtaatgaaaa atggttatag gtattcaagt
    27841 ggaggagatg gctcgttcac aaaacttttt taaaataata tggcattgct tccttatagg
    27901 agactgcctt gcacattgtc aaaacttcct ctaatgtaga gagattattg atataggaat
    27961 acagattatg ctaaagcggt gctacttatt gattttactt atgtttgtat tggcaagctg
    28021 cgcccatcat aaaccgcaaa cacctccagc ggaagttaaa aaacaaggta ccagcagtac
    28081 acggcagttt cgccaagtgt catcgttcaa tcaaatcgta gttcagggac gactgaatgt
    28141 taatttgcat accgggtata ataagccaga ggtcatgtta cgcggtgatc ccagagattt
    28201 ggttcaagta agaacgatag taaaacaaaa tacactctat gtgtctttgg gccagggata
    28261 cccggattat ggtgctgtga ctgtggatat taaaaccaaa ttcctcaacc ggtttcgcta
    28321 tgagggcgct ggggttgtga cagggaataa tttacggacc agctacttgg acttgtattt
    28381 agcgaacgaa ggtaccacca gactggcagg aaacattggg ttgcaaaaac tcgaggcagt
    28441 cggtaatggc gtgacacaaa tcaatggtgt atccagcagg aatttgcaaa tcgtattgaa
    28501 aggagatccc aaagtactga tatctggttt tgtcaatcta agacagcttg atatgtatgg
    28561 aaaaggcacg ttaagtttgt attggataaa aagcgatact ttaaccatta gagcaaaaaa
    28621 ggcggccaaa attcaattgg ctggaattgt gaatcgactg gatgttgaat tgtgggattt
    28681 tgctcaattt aaggggaaat atttacgagc tcaacgtagt tttgtgaaaa cccatgataa
    28741 atccgtagca gaaatttcag ctgtgaatca tcaaagcagc cttgctactg atgccagtga
    28801 tatttactat tataacttat caaaaaccag ggctgatttc atggcattta atggctcagt
    28861 gctggatatg cgtgaatggg gccaatctga tttaaaagat tttgatagat acaataagca
    28921 gtttccctag cattgattca ggataaaaga gctaaattca taagggtaaa cccttggtga
    28981 atttagcttg ctataaatta gagttgaaac ggaatcccta tgttgacttc aaatccttcc
    29041 tcatcggatg taaatggata attaggagta tcttccatca tccgactaag gaaagaggga
    29101 gagacatcct cgtaggactc ttcatcacta taatttccaa tgagtaataa tgaggctaat
    29161 cctgtaacga gaacagcaat ttttgatgca tttaattcat cattttttaa tgaggcatta
    29221 taaaaaaaca tgtttaattt ccaaagaaca aaatgagccg ttaaaataca atgatttttt
    29281 ttcttattca atatctaaat cgctataacg cttgcaagtc taaagaagag gttgtttgat
    29341 tggttacaaa tcaatcatgg caatttttta tttccattca tttgctttta ttaatacaat
    29401 caataatctc attcagatcg ttgtctagcg gcagtacatg cgcggaattt tttagccaat
    29461 gtattttgac attaggtaaa ttacaaaata attgttctac ttgttgagaa gcaaccactt
    29521 gatcatgaat tccaagaaaa agatcggccg ggcaagttgg ggggagccat tcatatccct
    29581 gagccaaggt tagcatttca atgattgtgg aaatgggaag ttttctataa gcgatttcgg
    29641 catgctcatc ggtgataata ttccctgcag cgttgcgaag ttgtcgaaat ccgaggcact
    29701 taagaatctg ggctaatttc agcatggcgt tgatgcgcat gtgtaatttt aatgcggggg
    29761 ctaatagaaa caggtgattg atagcatagg attgacttaa ttgacaggct aataatcctc
    29821 ccagggataa tcctaaaaca tcaacttttt gatactgatt tattaagagt tcacaggcgc
    29881 tttttgctga ttgaagccaa tcagctgctt tggattttga aaaggcttct atactttcgg
    29941 cgtgaccagc caatacagga caaaggatgg catcataatt ttttaaatta ggaatcagat
    30001 atcggtaaac tgccggtgaa gaagagaaac catgcaatac cagtaaagct cgttctgtgc
    30061 ctttaccacg ctgattgact ggagcaagga gatttgcttc ctccgactgc agttcgctga
    30121 gatgtttgcc gcggcgcata taccgaaaat cattgatttt catagaatat tcatttttca
    30181 ttgtcatgcc atgtatggtt gctatagtaa ttggtttaat ttggggtgaa taggctttcc
    30241 aaaagaaagt gtattaccaa atataaaaat gtaaaagtta taattgtatc agtttatttt
    30301 agtataagta ctgtgctatt tttctttgtc atataagaac tttaaagtgt aaatcttttt
    30361 gtct
//
LOCUS       DACVWI010000014        30281 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.014, whole genome shotgun sequence.
ACCESSION   DACVWI010000014 DACVWI010000000
VERSION     DACVWI010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 30281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30281
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.014"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            46..1161
                     /locus_tag="JBH85_02360"
     CDS             46..1161
                     /locus_tag="JBH85_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018578482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945030.1"
                     /translation="MIQNNWHYARPSLAKKYLDLFALGLTSARGLFARRRMGKTEFLK
                     KDFIPAAEKAGYVVVYTNLWELEIDPATALVSEFYKMVEPKGFTKIWDKLNQSINFKK
                     FKASGKIPGIGEGSVEADLLDPKRVTGTLLMEAMNSYDRKKIKMVLIIDEAQVLAYEE
                     NSHFAHALRAALDVRKEGIKVIFAGSSETTLRRMFGVASEPFYNWAPLESFELLGEDF
                     VKAMVEKVNTISKFPLAINDGINAFEQLKNTPEFFRRFIEYYLSNPEQGPQSAIEHTK
                     NKVFSDKNFHKQWSALLPTDMVVLSMIADGIKDLYGQYAIKRLGESLGVGGNVNKNTI
                     QNSLRRLEKKNLITKIDYGTYQFEDETFSDWVKYKED"
     gene            complement(1375..2196)
                     /locus_tag="JBH85_02365"
     CDS             complement(1375..2196)
                     /locus_tag="JBH85_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945031.1"
                     /translation="MKLSGALFAALAVLISLFVAAYYAPSHEQGGPTNWFNPVEWQRM
                     ASPGTLSKAHSFLSHNCNACHTPVRGVEAVNCITCHANDVALLQRQPTSFHADIGSCV
                     ECHSEHQGQNRRPTQMDHNAFVAIELKQLKKNAVKNEEQRLIFEQVQHYLEMNESPKQ
                     SPLINPHVSPAERTLQCTTCHQNEDKHFTLFGNNCSACHETSDWNIPEFIHPSPRSKD
                     CSQCHQAPPSHYMEHFRMISRKVARKEHAQVDQCFMCHQTTAWTDIKGIGFYKHH"
     gene            complement(2193..2954)
                     /locus_tag="JBH85_02370"
     CDS             complement(2193..2954)
                     /locus_tag="JBH85_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945032.1"
                     /translation="MNAPGRMMALGLILLMMMTWLGFTVHVSPRFAGSLWGGVIGISG
                     SVLMLVPLFYLFIKRIPILKHWVTQYVSMNTLLSWHIYAGIIGPILVLIHTGHKFQSV
                     LGIALTGMTLIVTISGFVGRYLLSFIADEVREKKELLSGLQNQYQRVAQEMQTNPDLK
                     KTLTRFHYMRARFASWLFNENVLTGENTAPASLRALRLVEAIAELEYAIQFHEQFKRA
                     FRTWLKLHIVIALVLYGLLALHVWSGIYFGLRWFQ"
     gene            complement(2954..4855)
                     /locus_tag="JBH85_02375"
     CDS             complement(2954..4855)
                     /locus_tag="JBH85_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster binding
                     domain-containing protein"
                     /protein_id="HAU0945033.1"
                     /translation="MIRYHNTNKTIRQWQPLLKVLLVLILMGATASSYAQASDEHASH
                     HQSSQGNLSVIPSVTGQTPGKDMMGAMGEMMKQMGMPKRKALYPSLMSLPDIPLERRS
                     EIQQLAQERMQSGLSLMAKGIDTLLKASAKTNFSQMQDAVASIREGLSQYDSGLAASR
                     ALAEGKVPRQVALLWFKQEMNLLPTAPATHTLLGGPLFHLTIITLFLVFFILMIWMYF
                     FKMRRASALLESLTSKGDVLSPSISATSSMSPPPAAASEVIKETHQSSGELATPAKPP
                     KFPVMRTLTIPLDQWEGQLRVCRIFDETPGVKTFLLASLKEVALPFTYFPGQFITITA
                     TINGTRVKRSYTIASTPTQLHYCAITVKREEQGLFSRYLHDEVKEGDVLEVMGPNGKF
                     TFTGEEASSIVLICGGVGITPMMGIIRYLTDIGWHGDIYLLYCCRTTSDFIFRDELER
                     LQKRYPNLNVFATMLRASGTVWMGLKGEFTTSIISYLVPDVAKRRIHVCGPPGMMNAV
                     LNSLKELSVSEKQIYTEAFGTAMKPPLTPQQMEAIAPENKAVVLFTRSHKTAPILPNY
                     TLLEIAEANGVSIDNSCRTGQCGLCKVKLLTGKVSMDCDDALSEEEKQHGFILACQAK
                     TDENIEVDV"
     gene            complement(4987..5877)
                     /locus_tag="JBH85_02380"
     CDS             complement(4987..5877)
                     /locus_tag="JBH85_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HAU0945034.1"
                     /translation="MTKRSQLNDHFTALDDIGNIMTAMKTLCSIELNKITKFLPMQEQ
                     VMQTIRDAGRDFFSAYPISPMNTPNGNSSLYILIGSERGFCGGFNDSVLHWIAEREQQ
                     DPEFLPVFLVVGRKLALKMANDSRVIKALDGANALQEIPAVILHLLQSLEEVVSQQRM
                     EWHSWQWEILFNEEEKNQIEVKTVRPFQEFFLTNDKPCSVPPILNLSHEQFLSEFAEQ
                     YLFSMCYSIFYKSFYGENHQRLFHLNHALDSLENKRSALKKYLNILRQEEITEEIQNI
                     IRCAEAIIGNDMKEHHLDIE"
     gene            complement(5923..7395)
                     /locus_tag="JBH85_02385"
     CDS             complement(5923..7395)
                     /locus_tag="JBH85_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006871185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HAU0945035.1"
                     /translation="MNLPDNHSILEHQRQRIENYHFEVRRSEVGHVVSVGDGIIWIAG
                     LPTAAIDEILISVDGCCIAMVFHLTERLVGAIMLLQTKKLKSGMPMFHLKRSLSIPVG
                     DSLLGRVVDPLGHPLDEEEPPPCDEQGLLDILSIPIIHRDFVTRPFYTGNKMIDNVIP
                     LGKGQRELIIGDNGLGKSALAIDIVINQKDKNVRCVYVLIGQKRSTVANTIQLLKETQ
                     ALEYTTVVVALATSLPGLLYLAPFAGCAVAEHWMKQGFDTLVVYDDLSAHANCYRELS
                     LLLRRPPGREAFPADIFYLHARLLERSTCLSPEMGGGSMTALPIIETKQGEIATYIPT
                     NLISITDGQLFFDEHLFSAGFLPAIDITKSVSRVGGKAQHPNIKKEAGRMKLDYMQFL
                     DLELFTRFGAKLDIKMQQHIQNGRLLREVFKQERLSPLPIEFQLAWLIAYNEGLFAHL
                     SLDDIPKVLKKIEQEVKKSSLSLASSREEWSNAVKGWLNG"
     gene            complement(7364..8125)
                     /locus_tag="JBH85_02390"
     CDS             complement(7364..8125)
                     /locus_tag="JBH85_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945036.1"
                     /translation="MELSWSTFLLELINFLVLIWILNYFFYAPIQQTIAKRRHMVQEQ
                     LENAEQRHNEAQQLQIKYEHRLADWQQEKNTLQKEFQQAMERWKSEETLHFEKKLNKE
                     QEQLNAREMKKAKEYIEKNAKEALLLAGKFTEKLLIQFADEHLEQKIIEKTIEDLNRY
                     PEKPWQLMEDVSEQDTLVVQSAYAINKSQQRRLGQAIEKIMCKKPTIEWVENPALLAG
                     LTLQMGSILLQANLRDELKFFTETNNELTRQPLHS"
     gene            complement(8135..8404)
                     /locus_tag="JBH85_02395"
     CDS             complement(8135..8404)
                     /locus_tag="JBH85_02395"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HAU0945037.1"
                     /translation="MNSISWFSLASTVIAALVIAIGTIGPAIAMGRAISHALDALARQ
                     PEAEKSITRTLFIGLAMIESLAIYCLVIVLIILFRNPLLSYLVSQ"
     gene            complement(8401..9093)
                     /locus_tag="JBH85_02400"
     CDS             complement(8401..9093)
                     /locus_tag="JBH85_02400"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HAU0945038.1"
                     /translation="MGEEGILNALSFSLGSVVITQSVLTTWLIMMALLLFLWLSSRHL
                     SLLPGNCQVVLEGIVVAMQDTMNEVLPLTYVALVFPFIATLWIFILISNLIGIIPGFY
                     SPTADLSVTASLAIVTFFSVHWFGVRAEGWKAYLKHYLKPTPFLLPFHLISELSRTLA
                     LAIRLFGNVMSLQLTALIVLMIAGFLAPIPILMLHIIEAVIQAYIFGMLALIYIAGGI
                     QSHELKKQGEWS"
     gene            complement(9096..9374)
                     /locus_tag="JBH85_02405"
     CDS             complement(9096..9374)
                     /locus_tag="JBH85_02405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HAU0945039.1"
                     /translation="MKFKDPKKDLAQHVKLDVSKINKAKREKSTVLAQTIYLGTLGFV
                     FILPIIAGAYLGVWLDSKLKGFSISWTINLIIIGVIVGAVNVYLLIKE"
     gene            complement(9364..9774)
                     /locus_tag="JBH85_02410"
     CDS             complement(9364..9774)
                     /locus_tag="JBH85_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HAU0945040.1"
                     /translation="MACFDLYLQSSTQCEKMSHVVSFVGEDASGLFGILAQHTQMMTC
                     LHFGLAWFRYDNNETEYLALPGAILYFKDNQLFLATRHYVRHKEYQAIQHILENELKS
                     EADHLISINDSLHRLDEEMLQRLWNLKRQNAYEI"
     gene            complement(9783..11195)
                     /locus_tag="JBH85_02415"
     CDS             complement(9783..11195)
                     /locus_tag="JBH85_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017365699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HAU0945041.1"
                     /translation="MSLIKKMDNISVAVKDNEQLIGHIVEVNGPVVTIRCDRLPPLHQ
                     SLNTYSDTDRYILEVFQHLDQHHVKALTLHRATGLQRGFAVYDQGNSLHIPVSPHCLG
                     RLLNIFGEPLDGGLPLHTEEYRDILASPAPIEMKTAQATVLETGIKVIDLLCPFVRGS
                     KIGLFGGAGVGKTILLMELMHAIIQWHQGISVFAGVGERIREGHELWYEMNAAGVMEK
                     TLMVFGQMDEPPGVRFRAGLSALTYAEYLRDTVARDVLFLVDNIYRFVQAGSEISGLL
                     GRMPANVGYQPTLMTEIAELQERITSTAQGAVTSVQAVYVPADDMSDPAVTGIITHLD
                     SIVVLSRAQAGKGIYPAVDALASKSKFMDKIVLGERHYSIAEAVREHLARYDELEDII
                     SMMGIEELSSKDRAMVLRARKLQRYLTQPFHVTKQQTAMEGQSVSLAETLADCEAFIN
                     GDFDELSEDECYMIGTMKRS"
     gene            complement(11660..14620)
                     /locus_tag="JBH85_02420"
     CDS             complement(11660..14620)
                     /locus_tag="JBH85_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HAU0945042.1"
                     /translation="MLKKDFHHVLRNYFLIFFLLVFSPFALFAQHEQHGAATPTETSS
                     KTTLSQSKPTGKKTEQQPAKKKPARAIKPLSLPRGPARTINLVVAYKTVYFAGKPRRA
                     IAVNGRIPAPTLHFKEGEQVTINVYNHLDKETSIHWHGLLVPWQMDGVEDVSQKAIPP
                     GGVFHYRFTLYQRGTYWYHAHAKAQEQEGLYGAFLIDPPSPPAYKYSKDHVVVLSDWS
                     NTPADNVFANLKKDGDYYSPRFPLQPSLMKFLHDYRKAPAKERKELIADYKMMQQMRM
                     SIYDLSDIAYDAYLLNGQPKSSPWTAPVRVGDTVRLRFIGAGASTIYRVKIPDAKMEM
                     VHSQGNDVRPYLIDDFWIAPGETYDVLVKIQKNRPYIIYAESIDTLGKVYGALVTKPR
                     QPVDYQHIVPFPEPLPVTREMMANMMKSGMNHGSMAKNNHSMSNKRGMAMKQPMAMPS
                     HSKTMSSQGNQHNMPAMTSQNSPGNTKHSNHSMSSMKQDQGMSGMNHASILKNKMSTA
                     PSSSMNESTSASRPMKPKGMPPMSSMSTGSMGSQSTTQTKHATMSGDGGMQDDTMNNG
                     MSMDNGMTMPIEPTIIGDTISAPNSISAKTLGTKYQQLTAAVPTNNPDIPVDGIIRME
                     LFGYMDRYIWMINGLPEYKAKPIVIEPGKRYRIIFTNNSMMRHPMHIHGHWFILRNGH
                     GVYDPLLHTIEVDPGATAVADFDTEASGQWFFHCHHLFHMTSGMARVFQYETIIDVVN
                     GKAKPETEIAPTPYINRPIVRVDEVMPIDKALITHPAGHHQGFYRANFLEVNADPFHN
                     AQEMTFRGYYGTDYQKLQLYTEDAEIYQGIVENADIDVFYWHLISQFWAIKGGVNYFY
                     RPGGPYWQPGIGIEGLMPYYIDTNIRTYYRDGSVKFDIQLSRATQLTNNFFFLTGIRS
                     ILATHTVVENEIGSGLNQMRYIIRPYYRVMPGLNVFTEFEYDKDYGAYKRILTDLGES
                     TTQTTVSFGVAVIF"
     gene            complement(14643..15134)
                     /locus_tag="JBH85_02425"
     CDS             complement(14643..15134)
                     /locus_tag="JBH85_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HAU0945043.1"
                     /translation="MIEIIPNWHPIFVHFTVALFTISTLLYALVYLASYTRWKTHLFV
                     VEFEIVARWCLWLGALSTLTTVAAGFYAYYTVKHDEVMHAAKVIHRNWALVTASTILL
                     MACWSVLRYSKTQKPTLAFLIALFIVQALLLTTAWHGGELVYRYGYGVLVPTQAQKAV
                     LQH"
     gene            complement(15268..17487)
                     /locus_tag="JBH85_02430"
     CDS             complement(15268..17487)
                     /locus_tag="JBH85_02430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HAU0945044.1"
                     /translation="MKHDHHQQKHTNTGKKDACCHQEHRVQKSRDASSKTEGAIIYTC
                     PMHPEVRQTNPGICPLCGMALEPETVTAESEINPEYLDMRRRFWMAVILTLPVVVLEM
                     GGHLLKNIISAGVSNWIQLLFATPVVLWCGWPFFQRGWQTLKTRQLNMFTLIAMGIGV
                     AWVYSVVAVLLPGVFPIAFRSQEGVVAVYFEAAAVITTLVLLGQVLELKAREQTGSAI
                     RALLKLAPDSAHRIKNDGSEEEVSLDRINIGDLLRVRPGEKIPVDGEVQEGRSFVDES
                     MVTGEPIPVTKEAGAKVIGATINQTGSFVMKALHVGSDTMLSRIVQMVSDAQRSRASI
                     QRLADTVSGWFVPAVILIAMLSFILWALLGPQPSLSYGLIAAVSVLIIACPCALGLAT
                     PMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTQIVTDQGLN
                     EEEALVLAASLEHQSEHPLAQAIVSAAKEKQLALEPVQDFDAPTGKGVVGKVNGHRVA
                     IGNIKLMQEHGNDNASLFEKADEFRGKGASVMFMAINDKTVALLVVEDPIKSTTPETI
                     RSLQQSGIEIYMLTGDSKKTAEAVAGTLGIKKVVAEIMPEDKSRIISELKEKGLTVAM
                     AGDGVNDAPALARADIGIAMGTGTDVAIESAGITLLHGDLRGIAKARRLSEETMSNIR
                     QNLFFAFIYNILGVPLAAGILYPFTGLLLSPIIAALAMALSSVSVIINALRLRRITL"
     gene            complement(17741..18646)
                     /locus_tag="JBH85_02435"
     CDS             complement(17741..18646)
                     /locus_tag="JBH85_02435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HAU0945045.1"
                     /translation="MKPILFSLFDASEISRRLKEALQVEVGDVTLHRFPDTEWYVKIN
                     SEVKNRSLIVVDSLNRPDGKILPLLFFAKTAKELGAKKIGLIAPYLPYLRQDIRFHQG
                     EGITSRYFAELLSTSFDWLMTIDPHLHRYNSLDEVYSIPTFVLHATLNISRWITSHIN
                     TPVLIGPDMESEQWVADIAEKGHFPYVILEKMRRGDKEVVISVPTVPTLQSSTPVLVD
                     DIISTARTMIVTVKHLQDLGVKSVTCIGVHALFAEDAYSLLSEMEGTQIITCNTVSHI
                     TNTIDVSDLIVEELVKNKLAKALKG"
     gene            complement(18643..20196)
                     /locus_tag="JBH85_02440"
     CDS             complement(18643..20196)
                     /locus_tag="JBH85_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase family protein"
                     /protein_id="HAU0945046.1"
                     /translation="MHDSFLPACGGFVVTKEVGHALRLKYLGIKTYHEAIIYMREDCH
                     VCHAEGFEVQTRIQVTLGKRSIIATLNVVTSELLKPGEASLSHYAWDSLNAKEGDEIQ
                     LSHPKPLESLSYVHTKIYGNELSFKQIKAIVDDVLNGRLSDLQISAFLAASAAERLSN
                     TEIMKLTKAMIDSGDRLSWSSPLIVDKHCVGGLPGNRTTLVVVPIVAAFGLIIPKTSS
                     RAITSPAGTADTMETLAPVSLSPKAMCHVVEKENGCIVWGGAVSLSPADDVLIRVERA
                     LELDSEGQLVASILSKKIATGATHAVIDIPVGPTAKVRNKSRALLLKQSLEEVGKQLG
                     LVVHTLITDGAQPIGNGIGPSLEARDVLAVLQGLPHAPKDLREKSLTLAGAVLEFSST
                     VQPGLGQSIAKQLLDSGEAFKKFQAICEAQGGMRELTAARFTHPIGAEKAGKVSLIDN
                     RILAKIAKLAGAPKSKSAGVDLHVHIGDQVEKGQPLFTIHSESSGEMTYARDFIRDKQ
                     NTIVLGEKP"
     gene            complement(20154..21515)
                     /locus_tag="JBH85_02445"
     CDS             complement(20154..21515)
                     /locus_tag="JBH85_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAU0945047.1"
                     /translation="MKLTFLGATQTVTGSKYLLTIDSKKILIDCGLFQGYKELRLRNW
                     ASLPIDPRDIDAVIITHAHIDHTGYLPLLVKNEFQGKIYATPGTKALCAILLPDSGHL
                     QEEEARLANKYGFSKHKPALPLYTEKDARTALKHFETVDFNAPHQLFNGFSFEFHRAG
                     HIVGAAMIKIKTSKCSLLFSGDVGRPYDPVMKAPTPIQDTDYLIMESTYGDRLHDATD
                     PLPQMGQVINTTIKRGGSVVIPAFAVGRAQSLLYFIYQLKQKGEVHKDVPVFLDSPMA
                     INATHLLCTYKEDHRLNEEQCHGLCNAATYINTPEESKELDRHKMPQIIIAASGMAQG
                     GRIVHHLKAFAPDPKSTLLFTGFQAGGTRGARIVNGEREVKIHGSMIPIRAKVVVMSS
                     TSAHADYQELLGWLKHFIRPPKKVFITHGEPHSAQSLKDKIEQQFGFTCMIPSYQHVE
                     DLS"
     gene            complement(21512..24655)
                     /locus_tag="JBH85_02450"
     CDS             complement(21512..24655)
                     /locus_tag="JBH85_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HAU0945048.1"
                     /translation="MVEKIIEFCANNRFIVLLFVVGFSLGGWWGLKNTRMDALPDISD
                     TQVIVYTTWMGRAPDLVEDQVTYPIVTALLSAPNVVAVRGFSDFGFSYVYIIFKDGTD
                     IYWARSRVLEYMSQLSGKLPEGVTPQLGPDATPVGWIYQYALVDESGKHNLADLRTFQ
                     DWYLSYWLRAIPGVSEVATVGGFVKQYQINLDPVKVLSYKLSVPQIIEKIRMSNNDTG
                     GRVIEFSGTEYMVRGRGYITSTDDIEKIAIGTNANGTPILLRDVATVQLGSDMRRGVV
                     DLNGQGETVGGIVIMRFGEDVLEVIGRIKDKLKELATAIPEGIKMVNVYDRSNLIREA
                     ISTANWNLIEELVVVGLLIIVFLGHFRSALIPIITLPLAILISFIPIYFFNIGLNIMS
                     IGGIIVAVGDMVDAAIIMVDNAHKRLADWEAKGSPGDRNKVLIDSAKEVGPAIFASLV
                     VIAISFMPVFTLEAQEGRLFSPLAYTKNLAIFMSALLAITLIPMLLPILVRGRIIPEQ
                     KHPITRVMQKMYAPVLKLALHYRGVVVAIAVVAALATVPLYKLIGSEFMPPLYEGTIL
                     YMPVTLPGISVTQATELLQEMDKKLKSFPEVAYVFGKTGRANTSTDPSPFSMMEVIVE
                     LKPKKFWRKSVTYESLVAEMDKALQFPGVSNAWTMPIKARNDMLTTGIRTAVGIKVFG
                     PDIKKIEAIGKEIEMVAKEVPGTSTVYAERVAGGYFLDFDIHRDELARYGLTIMDVNR
                     IIESAVGGENIATTIEGRERYPVNVRYLRELRDDPDKINRILVKTPSGAEIPIAQLVT
                     LTFRSGPAMVRDENAMLAGYVFIDISGRDIGSYVEELKQVVKAKVTLPPGYTLAWSGQ
                     YEFMQRVYERLKIFVPLTLAIIFILFYFTFRTITETLMVMLGVPFALLGGFLLLLLLG
                     YNMSIAVWVGMIALAGVAAETSAVMLAYLDSDYNEQKEKGLLKTLPDLIQTVQQCAVS
                     RIRPMAMAGLANILGLLPVMWATGIGADVMKRLAAPMVGGIFSALLLTLIVIPVVYVM
                     WRWQVDLKKQGSLMEAR"
     gene            complement(24682..25806)
                     /locus_tag="JBH85_02455"
     CDS             complement(24682..25806)
                     /locus_tag="JBH85_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0945049.1"
                     /translation="MKSRKPIVLFIVLLIAVQIGIAQSTTITHDKMDMKKSTSDNLIM
                     IDPVRLQAIGITSEPVKSQWIEKTIRTVGYVEADERLVAHIHVRFDGWIEKLFVNFTG
                     EKVKKGQALFTVYSPDLVSTQQECLLALQAKKILGKNQNSSIASGSETSFEAAKQRLL
                     LWGISEKEIKQLTQSGKITNTMTISSPINGTVIHKMALVGMRIKPEDELYTIADLSRL
                     WILGDIYEYELPYIKLDQTADVTLSYLPNQLFKAKLDFIYPTVDMKTRTAKVRFVVDN
                     AKDQLKPGMYANIDLKIPLGKRLVVSKNAVLITGERAVVFIYHGDGKIEWRNVTLGVR
                     AGDLIEVVQGIKEGDNIITSANFLIDSESQLKAAMGGMQH"
     gene            complement(25803..27047)
                     /locus_tag="JBH85_02460"
     CDS             complement(25803..27047)
                     /locus_tag="JBH85_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019350045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0945050.1"
                     /translation="MRRFNLKKCFWVIMIISLINYPVFSLSHAAPIPALEKLIEEAKG
                     NNPQIKAAQARWLAANRVAPQARSLPDPKVSVGSPMNIDPMRLQMIGASQEIPFPGKL
                     AVRGKIAVEKAKRAAADYQATCLVVIAQLKRIYYNLYSVNKSIEILQKTLLLLQELEK
                     SAQVNYSVGKVPQQDIFRAQTEIARLDMRLVILKQERESLEADINRLLNRPLDIAIHT
                     PPQLSVTHHRHNLAFLNNLIKQRSPQLKARERSVEQRRQTVKLSKMNYFPDVEIEGGK
                     LHNTVTNNDGYMVNLKATIPLYFMEKQNNGLRESLSRYNAEIEDLHTTYQALLFQVKN
                     AFLVEQRSAKLIELIQGSIIPLATLTFNSSQANYGVGKVDFLTLLNNLLTLQENEIEL
                     HNELANHEKAITQIEEITGKLT"
     gene            complement(27034..29730)
                     /locus_tag="JBH85_02465"
     CDS             complement(27034..29730)
                     /locus_tag="JBH85_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HAU0945051.1"
                     /translation="MTQIWHDKKPQEVAKVLKTDLSVGLTEEEAQRRLEESGANVLVK
                     QKKTSFLKILFQQVNSLVTWVLLGAVVISFLLGETVDAIAIFAIVVLNAIIGFIIEFR
                     ADRAILALQKLASPKARVIRDGHAKMITTSDIVPGDTLLFEGGDLVAADARLFELSSL
                     KTEEAPLTGESLPIEKNLNFCSVETPLAERKNMVFMGTSVANGTGRAIVVATGMSTEM
                     GRIATMLNEASRDESPLQKRLNQVGSRLLWLCFSIVLLIFILGWLRRIPFFELFMSSV
                     SLAVAAIPEGLPAVVTVALALGVQRMVRRAVLVRRMSAVETLGCLQVICTDKTGTLTV
                     GEMTARKLITAEEVYSIIGEGYHLDGHFISQGQEIDVAKDNLLQTVLNAASACNNAEI
                     RLQQGQLSTVGDPTEIALLVAAAKGDIWRDNLESTFPRIRELPFDSERKRMTIIRRQA
                     EQLTAFVKGAPEVIFERCTHILTREGIKKLTPKERARMQQSCQLMASEALRILAFAQR
                     QCDSSLLEAADEDIENNLVLLGLIGLQDPPHADAKASVKRCKMAGIKPVMITGDHPDT
                     AKAIARELEILNPGDRLMTGNELDKMSDDDFMACVKQIAVYARVTAEHKLKIVRAWKK
                     HHMVVAMTGDGVNDAPALKEASVGIAMGITGTEVTKESADIILMDNNFTSIVDGIEEG
                     RTIYDNIAKTLAYLLAGNMGELLVVFSVLLIGWPLPLLPIQLLWINLVTDGLPALALA
                     TDPAEPGILKRPPRSSQQSLMNFSFFKQVSFIGCLTALVTFGVFAYEYLVNADLIQAQ
                     DAAFSVLVTAELLRAFGARSQTKTIWQVGLFSNMRLFFIVSISFALQIFIHHVPFLQR
                     LFGISPVTLSECLLWIVLGTIPLLILELKKMITLRNSPHEAF"
BASE COUNT         8821 a         6820 c         6060 g         8580 t
ORIGIN      
        1 atataatagg tagtaaataa attactacta tttaataaaa taattatgat acaaaataat
       61 tggcattatg ctaggccttc attggcaaaa aaatatctcg atttatttgc gttaggatta
      121 acttctgctc gaggattatt tgctagaaga agaatgggaa aaaccgagtt tttgaaaaaa
      181 gattttatcc ccgcagcaga aaaagctggt tatgttgttg tatatacaaa cttatgggag
      241 ttagagatag atcctgcaac agcattagta tcagaatttt ataaaatggt agagcctaaa
      301 ggatttacaa aaatctggga taaattgaat caatcaataa atttcaaaaa atttaaagct
      361 tctggaaaaa tacctggcat tggtgaagga tccgtagaag cagatttatt agatcctaag
      421 agagtcacag gtacattatt aatggaagca atgaactctt atgatcgcaa aaaaataaaa
      481 atggtgttaa ttatagatga agcacaagtt ttagcttatg aagaaaactc acattttgcc
      541 catgctttaa gagctgcttt agatgttaga aaagagggta tcaaagtaat atttgcagga
      601 agttctgaaa cgacgcttag acgtatgttt ggggttgcat ctgagccatt ttacaattgg
      661 gcaccattag agtcgtttga attattgggt gaagattttg taaaagctat ggtagagaag
      721 gtaaatacca tttctaaatt tcccttggct ataaatgatg gtattaatgc atttgaacaa
      781 cttaaaaata cccctgaatt ttttcgcaga tttatagaat attatttgag taatccagag
      841 caagggccac aatcagctat tgaacatacc aaaaataaag tatttagtga taaaaacttc
      901 cataaacagt ggagtgcatt attacctacc gatatggttg ttttatcaat gattgcagat
      961 ggaataaaag acttatatgg ccaatatgct ataaaaagac ttggtgaatc tcttggagta
     1021 ggggggaatg taaataaaaa taccattcag aattcattaa ggagattaga gaaaaaaaat
     1081 ttaattacca aaattgatta tggcacgtat caatttgagg atgagacttt ttcagattgg
     1141 gtaaaatata aggaagatta gaacttagaa gctgtctaga aagttgcaaa cagaatatta
     1201 aatgctaaat gaataataag ggagtaatca tgggctgtga tatccatatt gaaatagata
     1261 tatatcaaaa gggtaattgg gctggtaatc ccccaaaact tcctgacttt cttgagtcac
     1321 atcgactctt taattcattt ttctcttcac tttcaagata tcatgtatcc ctatttagtg
     1381 gtgcttataa aatccaatcc cttttatgtc cgtccaggca gtcgtttgat ggcacataaa
     1441 acattgatcc acctgtgcat gttcctttct cgctaccttc cttgatatca tgcgaaaatg
     1501 ctccatgtaa tgactgggtg gcgcttgatg acattgggag caatcctttg acctagggga
     1561 tggatgaatg aattctggga tgttccaatc tgacgtttca tggcaggcag aacaattgtt
     1621 gccaaataaa gtaaagtgtt tgtcttcatt ttgatgacac gtggtacatt gcagggtgcg
     1681 ctcggcaggg gatacgtgcg gattgatgag cggtgattgt tttggagatt cattcatttc
     1741 caagtagtgc tgaacttgct caaaaatcaa tcgttgctct tcatttttga ctgcattttt
     1801 tttaagttgc tttagctcaa ttgcaacaaa cgcattatga tccatttggg tgggacgtct
     1861 attttggcct tgatgttccg aatgacattc aacgcaactt ccaatgtcgg catgaaatga
     1921 ggtgggttgt ctttgtaaaa gagcaacatc attcgcatgg caggtgatgc agtttacggc
     1981 ttccactcct ctgacaggcg tatggcaggc attgcaattg tgactgagaa aggaatgcgc
     2041 tttagataat gttccgggac ttgccattct ttgccattca acaggattaa accaattcgt
     2101 aggccctcct tgttcatggc tgggcgcata ataggctgca acaaacagtg aaattaaaac
     2161 agcaagggca gcaaataggg ctccactcaa tttcattgaa accaccttag cccaaagtaa
     2221 attccagacc agacatgcaa ggcaagcaaa ccatacaaca caagggcaat cacaatatgc
     2281 agcttcaacc atgtccgaaa ggcgcgtttg aattgttcat gaaattgaat ggcgtattcc
     2341 agctccgcaa tggcttcaac caaacgtaag gcacgtagac ttgctggggc tgtgttttcg
     2401 ccagttaata cgttctcatt aaatagccaa gatgcgaaac gcgctctcat ataatgaaag
     2461 cgtgttaggg ttttctttaa atcagggttc gtttgcattt cctgagctac cctttgatac
     2521 tgattctgaa ggcctgaaag gagttctttt ttctcacgaa cttcatcggc tataaaactc
     2581 aagaggtagc gccccacaaa accacttatc gtgacaatta aggtcatccc ggtcagggca
     2641 atacccagca cactttgaaa tttatgtccg gtatgaatca gtactaaaat ggggccaata
     2701 atgcctgcat agatatgcca ggaaagtaag gtgttcatgg aaacatactg ggtgacccaa
     2761 tgttttaaaa tagggatacg tttaataaaa aggtaaaata agggcacgag cattaacacg
     2821 gaaccactaa tgccaatgac gccaccccac aagcttcctg caaaacgagg agacacatgc
     2881 accgtaaatc ccagccatgt catcatcatg agcagaatca atccgagtgc catcatgcgt
     2941 cctggtgcat tcatcacaca tcaacctcaa tattctcatc ggttttggcc tggcatgcca
     3001 ggataaaacc gtgctgcttt tcttcctctg aaagcgcatc atcacaatcc atggatacct
     3061 tgcctgtgag taatttcact ttacacagcc cacactggcc tgtgcgacac gagttatcaa
     3121 tagaaacacc attggcctcg gcgatttcaa gaagcgtgta gttgggtaag attggggctg
     3181 ttttatgaga acgcgtaaat aaaacaactg ccttattttc tggtgcaata gcctccattt
     3241 gttgcggggt caatggtggc ttcatggccg taccaaacgc ttcggtatat atctgttttt
     3301 cagatacact aagctccttt aaactattca gcaccgcatt catcatgccc ggaggaccac
     3361 atacatggat gcgacgcttg gcgacatccg gcaccagata ggaaatgatg ctggttgtga
     3421 actcgccctt taaacccatc cacaccgttc ctgatgcgcg taacatggtg gcaaagacat
     3481 tgaggttagg gtaccttttt tgcagccgct ctaattcgtc acgaaagata aaatcgctgg
     3541 ttgttctgca gcagtacagt aaataaatat caccgtgcca tcctatatcc gttaaataac
     3601 gaataatgcc catcattggg gtaattccca ccccgccaca aataaggaca atgctcgatg
     3661 cttcttctcc ggtaaaagta aattttccat tgggccccat cacctcaagc acatcgcctt
     3721 ctttaacctc atcatgcaaa taacgtgaga acaaaccttg ttcttcgcgt ttcactgtga
     3781 tggcacaata gtgaagttgg gtaggcgttg aggcgatagt atagcttcgc ttcacccgtg
     3841 tgccattaat ggtagctgtg atggtgatga attgaccagg gaaataggta aaaggcaatg
     3901 ccacttcttt taatgatgcg agcaaaaagg tttttacccc cggtgtttca tcaaagatac
     3961 ggcacacacg caattgcccc tcccactgat caagggggat tgttagcgtg cgcatgaccg
     4021 ggaactttgg tggtttcgca ggtgttgcta attccccaga ggactgatga gtctctttaa
     4081 tgacttccga agcggctgca ggaggaggac tcattgagct cgtggctgaa atacttggag
     4141 aaaggacatc tcctttgctg gtcaaactct caagtaatgc cgatgccctt cgcattttaa
     4201 aaaaatacat ccaaatcatt aggataaaga agacaagaaa cagcgtgata atcgtcaaat
     4261 gaaacagcgg gccacctaaa agtgtatggg tggcaggtgc cgtggggagt aaattcattt
     4321 cctgtttgaa ccataataag gccacttggc gtggcacctt tccctcggca agcgcacgag
     4381 atgcagccaa tccactatca tactgtgaaa gaccttcacg tatcgaagcg actgcatcct
     4441 gcatctgaga aaaattcgtc ttagccgatg ctttaagaag cgtatcaatc cctttcgcca
     4501 tcaaagacag gcccgattgc atccgttctt gtgccaattg ttgtatttca ctgcgccttt
     4561 ccagtgggat atcgggcaga ctcatcaacg agggatacag cgcttttcgt ttcggcatgc
     4621 ccatttgctt catcatctca cccatagcac ccatcatgtc tttaccagga gtttgtccag
     4681 ttacactcgg aatgacactg agattaccct ggctgctttg atgatgactg gcatgctcat
     4741 cggatgcctg ggcataggat gatgcggtgg cgcccattaa aatcaaaacc aacagcactt
     4801 tcaatagggg ctgccattgg cgaattgtct tattggtgtt gtgatatcga atcattcttt
     4861 tccacgataa agtaatattt ccgagctatg cctatattat gctattgata ttagtactat
     4921 tttacaaggg gtgtcctcgc caatcatccc cctttcgaaa ccaaagaggg cgcaagagat
     4981 aggtcctcac tcaatgtcca agtggtgttc cttcatgtca ttgccaataa tcgcttccgc
     5041 acatcggatg atgttctgaa tttcttcagt aatttcttct tgacgcagta tattaagata
     5101 tttttttaat gcgcttcgtt tattctctaa gctatccaag gcatgattca aatgaaacag
     5161 cctttggtgg ttttcaccat aaaatgattt ataaaaaatg gaataacaca ttgaaaataa
     5221 atactgttca gcaaactcag ataaaaattg ctcatgggat aaattgagaa tcggtggaac
     5281 ggaacatggc ttgtcattgg ttaaaaaaaa ctcttggaat ggacgcactg tttttacctc
     5341 aatttgattt ttttcctcct cattgaacag gatctcccac tgccaagagt gccattccat
     5401 acgctgttgt gatactactt cctcaagaga ctgcaacaga tgtaaaatca ccgcaggaat
     5461 ttcttggaga gcattagcgc catctaatgc tttgatgaca cgcgaatcgt ttgccatttt
     5521 caaagccaat ttacgcccta cgacaaggaa tactggcaaa aattcagggt cttgttgttc
     5581 cctctccgct atccagtgaa gcacgctatc attaaaacca ccacaaaaac ctcgttcaga
     5641 accaataaga atataaaggg aagaattacc atttggtgta ttcatggggg aaatggggta
     5701 agcactaaaa aaatcacgcc ctgcgtctct aatggtttgc atgacttgtt cctgcatagg
     5761 aagaaatttg gtgattttat tgagctcaat agaacaaaga gttttcatgg cggtcatgat
     5821 attaccaatg tcgtctaagg ccgtaaaatg atcgtttagt tgactacgct tggtcataaa
     5881 tttcttccta aaattcaatg cgcctgagaa acaggcatgg tactacccat ttaaccagcc
     5941 tttgactgca ttgctccatt cctcgcgaga actggccagt gacaagctgc tttttttgac
     6001 ttcttgctct atttttttta gaaccttggg gatgtcatct aaacttaagt gggcaaagag
     6061 tccctcattg taggcaatca accaggcgag ttggaattca attggcaagg gcgaaagacg
     6121 ctcttgttta aatacttctc ttaacagtcg tccattttga atgtgttgtt gcattttaat
     6181 atcgagctta gccccaaaac gcgtaaacag ttccaagtca agaaattgca tgtaatccaa
     6241 cttcattcga cccgcctctt tttttatgtt ggggtgttgg gctttaccgc ctacgcgaga
     6301 aacggatttg gtgatatcaa ttgccggtag aaatcctgct gagaataaat gttcatcaaa
     6361 aaagagttgc ccatcggtga ttgaaatcag atttgtgggg atataggtcg caatttcccc
     6421 ttgttttgtt tctataatag gaagtgcggt catactgccc cctcccattt caggagacag
     6481 gcacgttgag cgctctaata agcgagcatg taaatagaag atatccgcag gaaaagcttc
     6541 acgcccagga ggcctgcgca gtaaaagcga cagttcacgg taacagttgg catgagcact
     6601 caaatcatcg tacacgacca acgtatcaaa gccttgcttc atccaatgct ccgcaacagc
     6661 acatcctgcg aaaggggcga gataaagcaa tccgggtaat gaggtggcca gtgccacaac
     6721 caccgtggtg tattccaacg cctgagtttc ttttagcaat tggatggtat tggcaaccgt
     6781 agaacgtttt tggccaatta acacatagac acaacgcacg tttttatctt tttgattgat
     6841 cacaatatca atagccaagg cgcttttgcc caacccatta tcacctataa tgagttcccg
     6901 ctgtcctttt ccaagaggaa tgacattatc aatcatttta ttaccggtat aaaaagggcg
     6961 cgtcacaaaa tcacggtgaa taatagggat cgataaaatg tcaagtaatc cttgttcatc
     7021 acagggtggt ggttcctctt catctaatgg atgccctaaa ggatcaacca ctcgccccaa
     7081 aagcgaatcc cctacaggaa tacttaatga acgcttcaga tgaaacatag gcatcccgga
     7141 ttttaatttt ttagtttgca acaacatgat ggcgcctaca aggcgttcgg tgagatgaaa
     7201 aaccatagcg atacaacagc catcgactga aataagaatt tcatcaatag ctgctgttgg
     7261 cagccctgcg atccagataa ttccatcgcc cactgagaca acatgcccca cttcagaacg
     7321 ccttacttca aagtgatagt tctcaattcg ttgccgttga tgctcaagaa tggagtggtt
     7381 gtcgggtaag ttcattgttc gtctcggtaa agaattttaa ttcatcgcga agattcgctt
     7441 gtagaaggat tgagcccatt tgaagtgtta acccggccag aagcgctggg ttttcaaccc
     7501 attctatagt tggtttttta cacattattt tttcaatggc ctgacctagg cggcgttgtt
     7561 gacttttatt gattgcataa gcactttgga caacaagagt atcctgttca gaaacatcct
     7621 ccattaattg ccatggtttt tctggataac gattaaggtc ttcgattgtt ttttcaatga
     7681 ttttctgttc aaggtgctca tcagcaaact ggattaacaa tttttctgta aattttccgg
     7741 ccagtaacag cgcttctttg gcattttttt caatatattc tttggccttt ttcatttcac
     7801 gtgcatttaa ttgttcttgt tctttattta actttttttc aaaatggagc gtttcctccg
     7861 acttccatcg ttccatcgct tgttggaatt ccttttgcaa cgtatttttc tcttgttgcc
     7921 aatccgcgag acgatgttca tattttattt gtaactgctg ggcttcattg tgacgttgtt
     7981 ccgcgttttc taattgttct tggaccatgt gcctgcgctt tgcaatggtt tgctggattg
     8041 gggcataaaa aaaatagttt aaaatccaaa tcaaaacaag aaaattaatg agttccaata
     8101 aaaaggttga ccacgatagc tccattttta gtccttattg agaaacgaga taagacaata
     8161 atggatttct aaataaaata atcaaaacaa tcaccaagca ataaatagcc aatgattcaa
     8221 tcatggctaa gccgataaat aaggttctgg taattgattt ttcagcctct ggctgccttg
     8281 ctaacgcatc aagagcatga cttatggcac gccccatggc gatcgcagga cctatagtcc
     8341 caatagcaat caccaatgcg gcaatcactg ttgatgctaa actaaaccag ctgatactgt
     8401 tcatgaccac tctccttgtt tcttcaactc gtgggattga atacccccgg caatatagat
     8461 taaagccagc ataccaaaga tataagcttg tatcactgct tcaataatat gaagcatgag
     8521 aatgggtatc ggtgctaaga atccagcaat catcagaaca ataagtgccg ttaactgaag
     8581 actcatgacg ttaccaaaca agcggatagc caaagccaat gttctcgata attcgctaat
     8641 taagtgaaac ggtaataaaa agggcgtggg cttcaagtaa tgctttaagt aggctttcca
     8701 cccctcggcg cgaactccaa accaatgcac ggaaaaaaaa gtcactatcg ctagagacgc
     8761 tgtgactgat agatcggctg taggcgaata gaatcctgga ataatgccaa ttaaattgga
     8821 aataaggata aaaatccata acgtggcaat aaaaggaaag accaaagcaa cataggtcaa
     8881 aggcagcact tcgttcatcg tatcctgcat tgcgaccaca ataccctcta aaacaacttg
     8941 gcaattcccc ggaagaagcg ataagtgtcg cgatgaaagc cataaaaaaa ggagcaaagc
     9001 catcataatg agccaggtgg ttaacacact ttgtgtgatg accactgagc ctagcgaaaa
     9061 ggatagtgcg tttaaaatcc cttcttcccc catggctatt ccttaatcag gaggtacaca
     9121 ttcaccgcac caacgataac cccaataata attaagttga ttgtccagct aatagaaaaa
     9181 cccttcagtt tgctgtctaa ccaaacccct aggtaggccc ctgcaataat aggcaaaata
     9241 aatacaaatc ccaaggtgcc taaataaatc gtttgtgcta gcacagtgga tttttccctt
     9301 tttgctttgt tgattttgct cacgtccaat ttaacgtgtt gtgccagatc tttttttgga
     9361 tctttaaatt tcataagcat tctgccgttt taaattccat agacgctgta acatctcttc
     9421 atccaaacga tgtaaactgt cgttgatact gataagatgg tctgcttcac tctttaattc
     9481 gttctctaag atatgctgta tggcttgata ctctttgtgg cgaacataat gtcgcgtagc
     9541 gagaaacaat tgattgtctt taaaatagag gattgctcct ggcaaagcca aatattccgt
     9601 ctcattatta tcgtaacgaa accatgccaa accgaaatgt aagcacgtca tcatttgggt
     9661 atgctgggct aaaataccaa acaggcctga agcatcttca ccaacaaaac taacgacatg
     9721 agacattttt tcacattgtg tcgaactctg taagtataaa tcgaaacacg ccatttttag
     9781 ttttagctcc ttttcatggt gcctatcata tagcactcat cctcagataa ttcatcgaaa
     9841 tcaccattga tgaacgcctc gcaatcggct aatgtctctg ctaatgacac cgactgtcct
     9901 tccatggccg tttgttgttt cgtcacatga aaaggctggg taagatagcg ttgcagtttg
     9961 cgtgctctta ataccatagc acggtcttta gaggaaagct cttcaatccc catcatggag
    10021 ataatgtcct ctaattcatc ataacgtgct aaatgctctc gtaccgcttc tgcaatcgaa
    10081 taatggcgtt cccccagcac gattttatcc ataaatttac ttttagacgc caaagcatcc
    10141 actgcgggat aaatgccttt gcccgcttgg gctcgagaga gcaccacaat ggaatccaaa
    10201 tgggtaataa ttccagtcac tgcgggatca ctcatatcat ccgcgggaac ataaaccgct
    10261 tgcactgaag tcacagcacc ttgagccgtt gacgtaatgc gttcttggag ttctgctatc
    10321 tctgtcatta acgtaggctg ataaccgaca ttagcaggca tcctgcctaa aaggcctgaa
    10381 atttcactgc cggcttgtac aaaccgataa atattatcga ctagaaacag tacgtcgcgt
    10441 gccacggtgt ctcgcaaata ctccgcatac gttaatgccg ataaccctgc tcgaaaacga
    10501 actccaggcg gctcatccat ttgaccaaag accatcaagg ttttttccat cacacctgct
    10561 gcgttcattt cataccacaa ctcatggcct tctcgtatgc gttccccaac ccctgcaaaa
    10621 actgaaatgc cctgatgcca ttgaataatg gcatgcatca attccatcag cagtatggtc
    10681 tttcctacgc ccgcaccacc aaacaatcct atcttactgc ccctgacgaa ggggcaaagc
    10741 aaatcaatca ccttgattcc cgtctcaaga acagtcgcct gggctgtctt catttcaatg
    10801 ggcgcaggac ttgctaaaat atcgcgatat tcctcagtgt gtagcggcaa acccccatca
    10861 agcggttcgc caaaaatatt taaaagtcgg cccaggcaat ggggagagac tggaatgtgc
    10921 agtgagttgc cttggtcata cacggcgaat ccccgctgca acccagtggc ccgatgaagg
    10981 gtcaatgcct tcacatgatg ttgatcaaga tgctgaaaca cttctagaat atatcggtcc
    11041 gtatcggaat aggtattaag cgactggtgc aagggcggca acctatcgca ccgtatggtg
    11101 acaacaggcc cattgacttc gacaatatgg ccgattaatt gttcattatc cttaacagca
    11161 accgaaatgt tatccatttt tttaattagg ctcatcacac caaatagaaa gcttatacct
    11221 tgccttctgg gcttgcaata gaaggaatct tcataaagca ggatgtcctg ttatgaacca
    11281 atccgactca cttaggtcaa attaaataac cccaccacca cgggcctttt tataacctat
    11341 gaatcatacg attagaacgc gtttatcaaa gatatggact cgctttatta atgactacac
    11401 taattgatgg aacggatcgc atcgaactca tcatcccagt ccaagacacg gtttggttcg
    11461 ttcttttcat gaaactcttt cttttgtggc cgccataatg cggtttcttt ttcttcttct
    11521 acacattctt cgactaaggg ttttaagacc tccgtatcca tcctaatcat tccttgttat
    11581 gagagttatt atcaagaacc tcaacatgat tggagcatga aaaaaattaa gcctttcatt
    11641 ctgttgaaag gctttctatt taaaatatca cggcaacacc gaaagacacc gtcgtctgag
    11701 tggtcgattc tcctaaatca gtaagaatcc tcttgtaggc accataatct ttgtcatact
    11761 caaattcagt aaagacattt aaaccaggca taacgcgata ataaggtcta atgatataac
    11821 gcatttgatt taagccagaa ccaatctcat tttcgaccac ggtatgagtg gcgagaatac
    11881 tgcggatccc cgttaggaag aagaagttat tggtaagctg ggtagcccgc gataactgaa
    11941 tgtcaaactt aacactgcca tcacgataat aagttctaat gttggtgtca atgtaataag
    12001 gcatcaaccc ttcgatgcca ataccgggtt gccaataagg tcctccaggg cgataaaaat
    12061 aattgacccc gcctttaatg gcccagaatt gactaatcaa atgccaataa aaaacatcga
    12121 tgtccgcatt ttcaacaatt ccttgataaa tttcagcatc ctcagtatac agctggagtt
    12181 tttggtaatc agtcccataa taccctcgaa acgtcatttc ttgagcgtta tgaaaaggat
    12241 cggcattcac ctcaagaaaa ttggcccgat agaacccttg atgatgtcct gcggggtgag
    12301 taataagggc cttatcaata ggcatcacct catcgactcg gacaatcggt cgattgatat
    12361 agggtgttgg cgcaatttcc gtttcaggct tggcttttcc gttcaccacg tcgataatgg
    12421 tttcatattg gaatacccgc gccatacccg atgtcatgtg aaacagatga tgacaatgga
    12481 aaaaccattg gccgctggcc tccgtatcaa aatcagccac cgcagtagca ccgggatcga
    12541 cttcaatggt atgcaacaag ggatcataaa cgccatgacc attgcgtaaa ataaaccaat
    12601 ggccatgaat gtgcatggga tggcgcatca tggagttgtt ggtaaagata atacgatagc
    12661 gttttccagg ttcaatgaca atcggttttg ctttgtattc cggcaagcca ttaatcatcc
    12721 aaatatacct gtccatataa ccaaacaatt ccatgcggat gatcccatcg acgggtatat
    12781 ccggattgtt ggtaggaacc gctgcggtta attgttggta ttttgttcct agggttttag
    12841 cgcttatgga attgggcgct gaaatcgtat cccctataat ggttggttcg atgggcatgg
    12901 tcatgccatt atccatggac atcccattgt tcatcgtatc gtcttgcatg cctccatcac
    12961 ccgacatcgt agcgtgtttc gtctgcgtgg tagactggct ccccatcgaa cccgttgaca
    13021 tagaactcat gggaggcatg ccttttggtt tcattggtct ggaggctgaa gtggactcgt
    13081 tcattgaaga agagggggct gtcgacattt tatttttaag tatggaagca tgattcatcc
    13141 ccgacatccc ttggtcttgt ttcatagagg acatggagtg attagagtgc ttggtattac
    13201 ccggactatt ttgagaagtc attgctggca tgttgtgttg attaccttgc gaactcatcg
    13261 ttttggaatg ggaaggcatg gccataggtt gtttcattgc cataccccgc ttattactca
    13321 tggaatgatt gttttttgcc atcgagccat gattcatccc tgacttcatc atgttggcca
    13381 tcatctctct tgtgacagga agaggctctg gaaagggtac aatgtgctga taatcaacgg
    13441 gttgtctggg cttagtcact aaggcgccat agactttgcc cagcgtatca atggattcag
    13501 cataaataat gtaaggcctg tttttttgaa ttttaaccaa gacatcatag gtttccccag
    13561 gtgcaatcca aaaatcatcg atgagataag ggcgcacatc atttccttgg ctgtgcacca
    13621 tttccatttt ggcatcagga attttaacgc gatagatagt actggcacca gcaccaatga
    13681 accgtaacct tacggtgtcc ccaactcgaa caggtgccgt ccagggggat gatttaggct
    13741 gaccattgag taaatacgca tcataagcaa tgtcgcttaa atcataaata ctcatgcgca
    13801 tttgctgcat cattttgtaa tcagcgatta attctttacg ttctttagct ggtgctttgc
    13861 gatagtcatg cagaaatttc atgagcgagg gctgcaatgg gaatcgaggg ctatagtaat
    13921 ccccatcttt ttttaaatta gcaaacacgt tatcggcagg ggtgttgctc caatcggata
    13981 ataccaccac atgatctttg ctgtatttgt aggctggggg gctcggtggg tcaataagaa
    14041 aggcgccgta caaaccctct tgctcttgag ccttggcatg ggcatggtac caataggttc
    14101 ctctttgata aagagtaaat cgataatgga acacacctcc tggtggaatg gctttctgac
    14161 tgacgtcctc gacaccatcc atttgccagg ggacaagtaa accatgccaa tgaatggagg
    14221 tttccttatc caaatggttg tacacattaa tggtgacctg ctcaccttcc ttgaaatgta
    14281 gggtaggggc agggattcga ccattgacgg caatggcacg tcgaggttta ccagcaaagt
    14341 atacggtttt ataagccact accaaattaa tcgtacgcgc tgggccacgt ggaagggaca
    14401 ggggttttat tgccctggca ggtttctttt tagccggttg ttgttccgtt tttttccccg
    14461 taggtttgga ttgagatagt gtcgtcttgg aagaagtctc tgttggggtc gccgcaccat
    14521 gctgttcatg ttgggcaaac aaagcaaaag gactgaacac caaaaggaaa aaaataagaa
    14581 aatagttcct tagtacatga tggaagtcct tttttaacat gttactatcc ttctataaaa
    14641 atttaatgtt gaagtactgc tttttgtgct tgggtaggta caagaacacc ataaccatag
    14701 cgatagacta actctcctcc atgccaggcc gttgttaaca acagtgcttg gacaatgaac
    14761 aaagcaatca agaaagccag ggttggtttt tgggttttac tataacgcaa aacagaccag
    14821 caagccatta ataggatagt gcttgctgtg acgagagccc agtttcgatg aatcactttc
    14881 gctgcatgca tgacctcatc atgcttcacc gtataatagg cataaaaccc ggctgctaca
    14941 gtagttagag tactcagtgc ccctagccac aaacaccaac gagccactat ttcaaattcg
    15001 acaacaaaaa gatgtgtttt ccagcgggta taagacgcca aatagactaa ggcatacaat
    15061 agagtcgaaa tagtgaataa ggccactgta aaatggacaa aaataggatg ccaattaggg
    15121 atgatttcga tcattgcctg tgtcctcctt gctgatttgg gaaataagct atttctacca
    15181 ctatgtcatg aaacacttcg gccgcaataa tagaaaggat actattgcct cgaatcaaag
    15241 atgacctatc actcgaaatt acattcttca cagtgttatc cgccgcagcc tcagcgcatt
    15301 gataataact gaaacagaag aaagcgccat agccagtgcg gcgatgattg gacttaatag
    15361 taatcctgtg aatggataca agattcccgc agccaaaggg acacccaata tgttataaat
    15421 aaaagcgaag aaaagatttt ggcgtatatt actcatagtc tcttctgaca aacggcgagc
    15481 cttggcgata ccacgcaaat caccatgcaa taaggtaata ccagcactct caatagccac
    15541 atcagtccct gttcccatgg caataccaat atcagctcgt gccagtgccg gtgcgtcatt
    15601 taccccatct cctgccattg ccacggtgag tcctttctct tttaattcac ttataatacg
    15661 gcttttatcc tcgggcatga tttcagccac tacctttttt atgccaagtg tacctgccac
    15721 agcttctgct gtttttttac tatcccctgt cagcatataa atttcaatgc cgctttgttg
    15781 aagagatcgg atagtttcag gagtagttga tttaattgga tcctctacca ccaaaagagc
    15841 taccgtttta tcattgattg ccataaacat cacagaggca cctttgccac gaaattcatc
    15901 tgccttttca aaaagagaag cattatcgtt cccatgctct tgcattaatt tgatattacc
    15961 aatggcaaca cgatgaccat ttactttacc cactactcct ttcccagttg gggcgtcaaa
    16021 atcttgaact ggttcaagag ccaactgttt ttcctttgca gcactcacga tggcttgggc
    16081 aagcggatgt tcgctttgat gttcaagcga tgctgctagc actaatgcct cttcctcatt
    16141 taagccttga tcagttacaa tctgcgtcaa tttggggtgc ccttcagtga gggttcctgt
    16201 tttatctaca acaagcgtgt tcaccttttc cattcgttca agcgcctcag cgtttttaat
    16261 caatacacca ctctgagcac ctttccctac tcctaccata atagacatcg gagttgccaa
    16321 gcctaaggca cagggacaag cgatgattaa tacagataca gcagcaatta agccatagct
    16381 aagtgatggt tgtggcccca acaatgccca caaaataaaa gatagcattg caattaaaat
    16441 cacagcaggc acaaaccatc cagatacagt atctgctaaa cgttgaatag atgcgcggct
    16501 tcgttgagca tcgctcacca tctgaacaat acgtgaaagc atggtatcac taccaacgtg
    16561 aagtgctttc ataacaaaac tacccgtttg gttaatcgtc gcaccaataa ctttagcacc
    16621 tgcttcttta gtaaccggaa taggctcccc agtcaccatg gattcatcta caaagcttcg
    16681 tccttcttgt acttcaccat ctaccggtat tttttcacca gggcgaacgc gcaataaatc
    16741 accgatatta atcctatcca gtgatacttc ctcctcactt ccatcattct taatacgatg
    16801 tgcactgtca ggtgctaact tcaataaagc acggatagca ctgcctgtct gctctcttgc
    16861 ttttaattcc agcacttgtc ctaataagac aagggtagta atgacagctg ccgcttcaaa
    16921 atacacagcg accacccctt cttgacttcg aaaagctata gggaataccc caggcagcag
    16981 tactgccacc acactataaa cccatgctac cccaataccc atagctatta gagtaaacat
    17041 attcaattga cgtgttttaa gagtttgcca gccacgctga aaaaatggcc agccacacca
    17101 taacacaaca ggtgtagcaa atagcagttg aatccagttt gaaacaccgg cagatataat
    17161 gtttttcaac aaatgtccgc ccatctccaa taccacaaca ggtaaagtaa gaatcactgc
    17221 catccaaaat cggcgcctca tatcaaggta ttcaggattt atttcacttt cggcggtcac
    17281 tgtttccggc tctaaggcca taccacaaag agggcaaatc ccgggattag tctgacgtac
    17341 ttcaggatgc atggggcaag tatagatgat tgcaccctct gttttggagg aagcatcgcg
    17401 tgacttctgt accctatgtt cctgatgaca acaagcgtcc ttttttccag tgtttgtatg
    17461 cttttgttga tgatggtcgt gtttcattga tcacctattc gtattagtag tttcacttaa
    17521 gcagagaaca tgtttcaatg cccaccgcca tggccacccg cactgtgtcc accatagcct
    17581 ccatcgacct cagtctcttg cgagccatgc ttcatggcac catcacaggc acttaaaaag
    17641 aacgctgccc cgattagtcc aacaaaaaca ataaacaccc tcattgtttt aaaaattgac
    17701 atgtaacact ccttgtaaat aataaatgta atcgtcttac ttatcctttt aaagcctttg
    17761 ctagtttgtt ttttactaac tcctccacaa tcaaatcact cacatcaatg gtattggtta
    17821 tatgacttac cgtattacaa gtaatgattt gcgtgccttc catttctgat aatagggaat
    17881 aggcatcttc tgcaaaaagc gcatgcacac caatgcaagt cactgactta actcctaaat
    17941 cttgcaaatg cttcaccgtt actatcatgg ttctggctgt ggaaataatg tcatcgacga
    18001 gtaccggcgt agaggattga agcgtgggga cagtaggcac ggaaatcacc acctctttat
    18061 cacctcgtct cattttttcc aaaatcacat aggggaaatg ccctttttct gcaatgtcag
    18121 caacccactg ctcactttcc atatcaggcc caataagcac tggcgtatta atgtggcttg
    18181 taatccatct cgatatattt aaagtagcat gcaagacaaa agtaggaatg gagtagactt
    18241 catctaaaga gttataacgg tgcaaatggg gatcaatcgt catgagccaa tcaaatgaag
    18301 tggagagtaa ttcagcaaaa taacgcgacg taatcccttc accctgatga aaacgtatat
    18361 cttgacgtaa atacggaaga taaggggcaa tcaagccgat ttttttagct cctaattctt
    18421 tagctgtttt agcaaaaaac agcaaaggca gtatttttcc atcgggtcgg tttaagctat
    18481 ccactacaat gaggctgcga tttttaactt ccgaattaat ttttacgtac cactctgtat
    18541 ctggaaaacg atgcaacgtg acatcaccca cctccacttg aagcgcttct tttaaacgtc
    18601 tactgatttc tgaagcatca aataatgaaa ataaaatggg cttcaaggct tctctcccag
    18661 aacaatggta ttttgtttat cgcgaataaa atcgcgagca taagtcatct ctcctgaaga
    18721 ctctgaatgg atggtgaaca aaggctgtcc tttttcaact tggtcgccaa tatgaacatg
    18781 caaatcaacc cctgctgatt tagacttagg ggcccctgca agcttggcaa tttttgcgag
    18841 aattcgattg tcaatgagag atactttacc tgctttctca gcaccaatag ggtgagtaaa
    18901 acgtgccgcc gtcaattccc gcatgcctcc ttgtgcctca caaatcgcct gaaatttttt
    18961 aaacgcctct ccgctatcta ataattgttt ggctatcgat tgacctaagc caggttgtac
    19021 tgttgatgaa aattccagta ctgctcctgc aagagttaat gatttttcgc gcaaatcctt
    19081 tggggcatga ggcaatcctt gtaataccgc caacacatcg cgtgcttcca gggaagggcc
    19141 aataccattt cctatcggtt gtgcgccatc agtaattagg gtatggacca caaggcctaa
    19201 ctgttttcct acttcttcaa gggattgctt aagaagtaaa gccctggact tatttctgac
    19261 ttttgcggta ggtcccactg gaatatcaat aacggcatgg gttgctcctg tggcaatttt
    19321 tttagaaagg attgaggcga ccaattgacc ttcactatct aactcaagag cacgctccac
    19381 ccgaataagc acatcatcgg cagggcttaa gctcacagca cctccccaaa cgatacaacc
    19441 gttttccttt tcaaccacgt gacacatagc ctttgggctc agtgacaccg gtgctaaagt
    19501 ttccattgta tctgcagtac ctgctggaga agtaattgcc cgagaggaag tttttgggat
    19561 aatcaagcca aaagcagcta caatgggaac cacaacaagg gtggtgcgat ttcctggcaa
    19621 accaccaaca caatgcttgt ctacaatcaa aggagatgac caggataagc gatcgccact
    19681 gtcaatcatg gcttttgtaa gtttcatgat ttcagtattg cttaaacgtt ctgcggcact
    19741 ggccgctaaa aaagcagaaa tttgcaaatc agaaagacga ccatttaaaa cgtcatcaac
    19801 gatggctttg atttgtttaa aagagagttc attaccataa atcttcgtat gcacataact
    19861 taatgattcc agaggtttag gatgggataa ttggatttca tccccttctt tagcatttaa
    19921 agaatcccag gcatagtgtg acaagctggc ttccccgggc ttaagcagct ctgaggtaac
    19981 gacattaagc gttgcgataa tggagcgttt gccaagggtc acttgaatac gtgtctgcac
    20041 ttcaaagcct tctgcatgac acacatgaca atcctctcgc atgtaaataa tggcttcatg
    20101 atacgtcttg atgcctaaat attttaaacg caaggcatga cccacttctt ttgtcacgac
    20161 aaatcctcca catgctggta agaaggaatc atgcaggtga aaccaaattg ctgttcaatc
    20221 ttgtctttga gcgattgtgc actgtgaggt tcaccatgag tgataaagac ttttttgggt
    20281 ggccgaataa agtgctttag ccaacctaac agttcctgat aatcggcatg cgcagaagta
    20341 ctgctcatga caacgacctt ggcgcgtata ggaatcatac taccatgaat tttgacctca
    20401 cgttccccat tgacaatcct agcaccacga gtgcctcctg cttgaaagcc ggtaaaaaga
    20461 agggtgctct taggatcagg ggcaaaggct ttcaaatgat gcacaatacg accaccctgg
    20521 gccatcccac tggcggctat aatgatttga ggcattttat gacgatcgag ttcttttgac
    20581 tcctcagggg tattgatata agtagctgcg ttacataagc catggcattg ttcctcattt
    20641 aaacgatgat cctctttata agtgcagagc aaatgggtcg cattgatggc cattgggctg
    20701 tctaaaaaca ctggaacgtc tttgtgaacc tctccttttt gtttcagttg ataaataaaa
    20761 taaagaagac tttgcgcacg ccctacggca aaggctggaa tgacgacaga accccctcgt
    20821 ttgatggttg tattaatcac ttgccccatt tgcggcaacg gatcagttgc atcatgcaat
    20881 cggtcgccat aagtggattc catgatcaga taatccgtgt cttgaatggg ggttggtgcc
    20941 ttcatgaccg gatcataagg tcgaccaaca tccccgctaa acaaaaggga acacttgctt
    21001 gtttttattt tgatcatcgc ggcacccacg atgtgtcctg cacgatgaaa ttcgaagcta
    21061 aatccattaa ataattggtg cggcgcatta aaatcaacgg tttcaaaatg ttttaatgcc
    21121 gttctcgcgt ctttttcagt ataaagagga agcgctggct tatgtttcga gaaaccatat
    21181 ttattggcta atcgtgcttc ttcttcctga agatgaccac tatccggtaa taaaatagca
    21241 cacaatgctt ttgtgccggg tgttgcatag atttttcctt gaaattcatt ttttactaat
    21301 aggggcaaat aaccggtgtg gtcaatatgc gcatgagtga taatcacagc atcaatatcg
    21361 cgcgggtcaa taggcaatga agcccagtta cgtaatcgta attctttata cccttgaaaa
    21421 agaccacaat cgatgagaat ttttttagaa tcgatggtca aaaggtattt tgaaccagta
    21481 acggtttggg ttgcccctaa gaacgttaat ttcatcttgc ctccattaga cttccttgtt
    21541 ttttcaaatc cacttgccag cgccacatca cataaaccac gggaatcaca attaaagtca
    21601 gcaatagtgc tgaaaaaatc ccacccacca tgggagccgc gaggcgtttc atcacatcag
    21661 caccaatacc tgtcgcccac atcaccggta acaaacccag tatattcgca agccctgcca
    21721 tcgccatagg gcgaatacgc gatacggcgc attgctgcac cgtttgaatc aagtccggca
    21781 aggttttgag taatcctttt tctttttgct cgttgtaatc agaatcaagg taagcgagca
    21841 tcaccgcact cgtttcagca gccactccag caagtgcaat catcccaacc cagaccgcga
    21901 tactcatgtt ataccctaat agaaggagca gcaaaaatcc gccaagtaga gcaaagggta
    21961 cacctagcat caccatcaat gtctcagtga tggtgcggaa ggtaaagtaa aacaaaataa
    22021 aaataatggc taaggtgagt ggtacaaaaa ttttaagtcg ttcatacacg cgttgcatga
    22081 attcgtattg acctgaccag gcaagcgtgt agcccggggg taatgtgact tttgccttga
    22141 ccacttgctt taactcttcc acgtagcttc caatgtctcg tccgctaata tcaatgaaca
    22201 cataacctgc taacatcgca ttctcatcgc gaaccatggc aggacctgaa cgaaaggtta
    22261 aagtcaccaa ttgagcaata ggtatttcag caccactggg tgttttcact aaaatacgat
    22321 tgatcttatc cggatcatcg cgtaattctc gcaaataacg cacattaaca ggataacgtt
    22381 cacggccttc aattgtggtc gctatgtttt caccacccac ggctgattcg atgatacgat
    22441 tgacatccat aatggttaaa ccatagcgcg caagctcgtc tcgatggatg tcaaaatcaa
    22501 gaaaataccc tccagccacc cgttccgcat acaccgtact tgtccccggt acttctttgg
    22561 ctaccatttc gatttctttg ccaatggctt caattttttt aatgtcagga ccaaaaactt
    22621 taatccctac agcggttcga attcctgtgg tgagcatgtc attacgcgct ttaatgggca
    22681 tagtccaggc attgctcaca ccgggaaatt gcaaggcttt gtccatctca gcgaccaggc
    22741 tttcataggt cacgcttttg cgccaaaatt tcttaggctt aagttcaaca atcacttcca
    22801 tcatgctaaa aggagaagga tcggttgacg tattagcccg tcccgttttt ccaaacacat
    22861 aagccacttc cgggaatgat tttaatttct tatccatttc ctggagcagt tctgtggctt
    22921 gtgtgaccga tatgccaggt aaagtaacag gcatatataa aatcgtacct tcatacagag
    22981 gcggcatgaa ttctgagcca atgagtttat agaggggaac cgtggctaat gctgctacca
    23041 cagcaatcgc tactacaaca ccacggtaat gcagtgctaa tttcaaaact ggtgcgtaca
    23101 ttttttgcat cacgcgggta atgggatgtt tttgctcggg gatgatacgc ccacgcacca
    23161 aaataggtaa taacatgggg attaaagtaa tggccagcaa agcactcata aaaatggcta
    23221 aattttttgt ataggccaag ggtgagaata accgtccttc ttgggcctcc agggtaaaaa
    23281 ccggcataaa cgatatggca ataaccacta atgatgcaaa aatggcaggg cctacttctt
    23341 tcgctgaatc aatcaacact ttgttgcgat cgccgggact tccttttgct tcccaatcgg
    23401 ctaaccgttt gtgtgcgtta tcgaccatga taatggccgc atccaccata tccccaaccg
    23461 ccacaatgat gccgccaatg gacatgatat taaggccgat attgaaaaaa taaatgggaa
    23521 taaacgaaat caaaatagca agcggcaaag taataattgg aatcaaagcg gaacgaaaat
    23581 gccccaagaa aacaatgatt aataacccaa ccaccacaag ttcttcaatc aaattccagt
    23641 tggccgttga aatggcttct cgaatcagat tactgcggtc atacacattg accattttta
    23701 ttccttctgg aatggcagta gccaattctt tgagcttatc cttgattcga ccaatcactt
    23761 ccaaaacgtc ttccccaaaa cgcatgatga cgatgccacc aacggtttcg ccttgaccat
    23821 ttaaatcgac cacaccacga cgcatgtctg agcctagctg cacggttgcc acatctcgta
    23881 ataaaatcgg cgtcccattg gcattcgtac caatggctat tttttcaata tcatctgtcg
    23941 acgtgatata gcctcgtcca cgaaccatgt actctgtccc tgaaaattca atgacacgcc
    24001 caccagtatc attattgctc atacgaattt tttcaataat ttggggtaca gaaagtttat
    24061 aggaaagtac tttgacggga tctaaattaa tttgatactg cttaacaaaa ccacccacgg
    24121 tggcgacctc tgatacacca ggtatagctc ttaaccaata acttaaatac caatcttgaa
    24181 aagtgcgtaa atcggccaga ttatgcttcc cgctttcatc cactaaggcg tattgataaa
    24241 tccaaccgac tggtgtggca tcaggaccta attgaggggt caccccttca ggcagttttc
    24301 cgctcaattg gctcatgtat tctaatacgc gcgagcgtgc ccaataaata tccgttccat
    24361 ctttaaaaat gatgtacacg taagaaaagc caaaatcaga aaaaccacgc acagctacga
    24421 cattcggtgc agataataat gctgttacaa tgggataagt gacttgatct tccaccagat
    24481 ccggtgctct gcccatccat gtggtataca caatcacttg cgtatccgaa atatcaggca
    24541 aagcatccat gcgagtattt tttaaacccc accaaccgcc caaggagaac cccacgacaa
    24601 atagcaacac gataaatcga ttgtttgcgc agaattcaat tattttctca accatgtaaa
    24661 tccttttatc gtattaatgc gtcaatgctg cattccgccc attgcggctt ttaactgact
    24721 ctcggaatca atgaggaaat tggctgacgt aataatatta tctccctctt tgatgccttg
    24781 taccacctcg atcaaatcac cagcacgcac acccaatgtc acattgcgcc actcaatttt
    24841 tccatcccca tgataaataa acaccaccgc acgctcgccc gttatcaaga cagcattttt
    24901 ggacactaca agtcgcttgc ctaaaggaat ttttaagtca atattggcgt acatccccgg
    24961 ttttaattga tctttggcat tatccaccac aaaacgaacc ttggcggtac gagttttcat
    25021 atcgaccgtt ggataaataa aatcaagttt ggctttaaac aattgattag gcaaatacga
    25081 caaggtgaca tctgctgttt gatcgagttt aatataaggt aattcatact cataaatgtc
    25141 gcctaaaatc cacaaacgag ataaatcggc tatggtatac agttcatctt ctggtttgat
    25201 tcgcataccg actaatgcca ttttatgaat aactgttcca ttaattggag aactaatggt
    25261 catcgtattg gtaattttac cgctttgggt taattgctta atttcctttt cagaaatccc
    25321 ccacagcaaa agtctttgct tggcagcctc gaaggaggtt tctgagcctg atgcaatcga
    25381 actattttgg ttttttccaa gaattttttt ggcctgcaaa gccaacaaac attcttgttg
    25441 agtagaaacc agatcaggac tataaacagt aaataaagct tgaccctttt taactttctc
    25501 tccagtaaaa ttgacgaata atttttctat ccaaccatca aaacgcacat gaatatgggc
    25561 aaccaaccgt tcatctgctt caacataacc caccgtacga atcgtttttt caatccattg
    25621 gctttttacc ggctccgatg taatgcctat ggcttgtaag cgaactgggt ctatcatgat
    25681 taaattgtcc gaggtggatt ttttcatatc catcttgtca tgagtaattg ttgttgattg
    25741 cgcaatacct atttgaacgg cgattaataa cacaataaat aagacgattg gctttctaga
    25801 cttcatgtga gcttccctgt aatttcttct atctgcgtga tggctttttc gtgatttgcc
    25861 aactcattat gcaattcaat ttcattttct tgtaacgtca gcaagttatt aagcaaggtt
    25921 aaaaaatcca ctttaccaac tccataattg gcttgtgatg aattaaacgt tagtgtggcc
    25981 aaaggaatga tggagccttg aatcaattca attaactttg cagaacgctg ttccactaaa
    26041 aaagcgtttt tgacctggaa aagcagtgct tgataggtag tgtgcaaatc ttctatttca
    26101 gcattgtaac gagaaaggga ttctcgcaag ccattatttt gcttctccat aaaatacaaa
    26161 ggaatagtgg ctttcaagtt gaccatatat ccgtcattat tcgttactgt gttatgtaat
    26221 tttcctcctt caatttcaac atcaggaaaa taattcattt tacttaattt aaccgtttgg
    26281 cgtcgttgct caacgcttcg ttcgcgtgct tttaattgtg gagagcgctg tttgatgagg
    26341 ttattgagaa atgccaaatt atgacgatga tgggttacag ataactgcgg tggggtatga
    26401 attgcaatat ccaaaggtcg atttaaaaga cggttaatat cagcctcaag cgattcccgc
    26461 tcttgtttta agataaccaa acgcatatcc aggcgagcga tttcggtttg cgcccgaaaa
    26521 atatcttgtt gcggtacttt tcccacgctg taattcactt gagcactttt ttcaagctct
    26581 tgcagaagca gtagggtttt ttgcaggatt tcaattgatt tattaaccga ataaaggttg
    26641 taatagatac gctttaattg ggcaataaca accaggcacg ttgcctgata gtcagcagct
    26701 gctcgcttcg ccttttccac cgctattttc ccacgaactg caagcttccc tggaaatgga
    26761 atttcctgac ttgcaccaat catttgtagc cgcatgggat caatattcat cggggaacca
    26821 acactgactt ttggatcagg tagtgaacgg gcttggggtg caacacgatt ggcagcgagc
    26881 cagcgcgcct gagccgcctt aatttgtggg ttatttccct tagcctcttc aatcagtttc
    26941 tctaaagccg gtattggagc agcatggctt aaagagaaaa caggataatt gatcaagctt
    27001 attatcatga taacccagaa gcattttttt aaattaaaac gcctcatgag gtgaattcct
    27061 taatgtaatc attttcttca attccaaaat cagtaaaggg atggttccta agactatcca
    27121 aagcaagcat tcagataaag tcactggact aattccaaaa agacgttgca aaaatgggac
    27181 atgatgaatg aaaatctgca acgcaaaact aatgctgaca ataaaaaaca atcgcatgtt
    27241 tgaaaacaat cctacttgcc atatggtctt ggtttgacta cgagccccaa aggctctcaa
    27301 tagttcagca gtcactaaaa cagaaaaagc agcgtcctga gcctgtatca aatccgcatt
    27361 gactaaatat tcgtaagcaa acacaccaaa ggtgactagt gccgttaaac agcctataaa
    27421 agatacctgc ttgaaaaatg aaaaattcat cagagattgt tgtgatgatc ttggcggacg
    27481 tttaagaatt ccaggctcag ccggatcggt tgccaaagcc aatgccggca aaccatccgt
    27541 cactaaattt atccataaca attggattgg caatagtggt aagggccagc cgattaaaag
    27601 aacactaaaa acaaccagca gttcacccat atttcccgct aataaataag caagcgtttt
    27661 ggcaatattg tcataaattg tccgcccttc ttcaatccca tcgacaatag aggtaaagtt
    27721 attatccatg agaataatat cggcagattc tttagtcact tcagtgcctg tgatccccat
    27781 tgcgatacca accgaagctt cttttagtgc cggtgcatcg tttacaccat caccagtcat
    27841 tgcaaccacc atgtggtgtt ttttccaggc acgaacgatt tttaatttat gttcagcagt
    27901 aacgcgagca taaacagcaa tctgtttcac acacgccata aagtcatcat cagacatctt
    27961 atccagttca ttacctgtca tcaggcgatc gcctggattc agtatctcta attcacgggc
    28021 aattgctttg gcggtatcgg ggtgatcgcc tgtgatcatg actggtttaa tgcccgccat
    28081 tttacaacgt ttaaccgaag cttttgcatc agcatgcggg ggatcctgga gtcctataag
    28141 acccagtaaa acaagattat tttcaatgtc ttcatcagca gcctccaata atgaagaatc
    28201 gcattgccgt tgtgcaaagg ccaagattcg caatgcttca ctggccatca attgacagga
    28261 ttgttgcata cgggcacgtt ctttaggggt taattttttg atgccctctc gagtcaaaat
    28321 atgggtacag cgttcgaaaa tcacttcagg tgcccctttg acaaacgcag tcagttgctc
    28381 tgcttgccta cggattatcg tcatacgttt tcgttctgaa tcgaaaggca attctcgtat
    28441 gcgaggaaaa gtagactcca gattatcacg ccaaatatct cctttggcag ccgctactaa
    28501 tagtgcaatt tctgttgggt ccccaacagt ggatagttgt ccttgttgca aacgaatttc
    28561 tgcattgtta caggccgaag cggcgttcaa aaccgtctgt aacaaattat ctttggcgac
    28621 atcgatctct tgaccttggg aaataaaatg accatccaag tgatatcctt cacctatgat
    28681 actgtacact tcctctgcgg taatgagttt acgggctgtc atctcaccca ctgttaatgt
    28741 ccctgtttta tccgtacaaa tgacttggag acaacccaga gtttccacag ctgacatacg
    28801 ccttaccaag acggcacgtc gtaccatgcg ttgaacacct aaggctaaag caacagtgac
    28861 taccgcaggt aaaccctcag gaatagccgc tacagccaga ctaacggagc tcataaacaa
    28921 ttcaaaaaat ggaatacgac gtaaccaacc gagaataaaa atcagtagga caatggaaaa
    28981 acaaagccat aatagccggg aacccacttg attaagcctt ttttgtaatg gggattcatc
    29041 acgagaagcc tcattcaaca tggtcgcaat acgtcccatt tcggtactca ttccggttgc
    29101 gactacaatg gctcgacctg taccattcgc cacggatgtt cccatgaaga ccatgttttt
    29161 gcgctcagcg agtggcgttt caacactaca aaaattgaga tttttttcaa taggcaatga
    29221 ttcaccagtt aaaggggctt cctccgtctt taaggaagac agctcaaaaa gacgagcatc
    29281 agctgcaact aaatctcctc cttcaaaaag aagtgtatcg cctggcacga tatcggaagt
    29341 agtgatcatc ttggcatgac catctcgaat taccctggct ttaggggaag ccaatttttg
    29401 caacgctaaa atagcacgat cagctcgaaa ttcgataata aagccgataa tggcattcaa
    29461 aaccacaatg gcaaaaatgg caatggcatc tactgtttca cccagtaaaa atgaaatgac
    29521 tacagcgcct aaaagaaccc aggtgactaa actgtttact tgttggaaaa gaattttcaa
    29581 aaaagaagtt tttttctgtt tgaccaatac attagcgcca gactcttcta agcgtcgttg
    29641 tgcttcttcc tcagttaaac caactgataa atcagtttta agtactttgg ccacttcttg
    29701 gggcttcttg tcatgccaaa tctgcgtcat tgcgtccatc ctttgaatct gctcacctat
    29761 tatacatgtg agtctaattt ccctaaaaat tcaaacgcct aagttggtat tataagagaa
    29821 tcaatactca cgacaaaccc ttacaattca gtctaaagcc cctgatgtta acgaccactg
    29881 ccacctccat ggccttgcgc gacatgaata ttttaattct ttgtactatc gttggcagct
    29941 ccactgtttg tacaaacagc aagtaataaa cagcaggcta aaataaacca atgactttgt
    30001 tttatgatga tttttatcca tgattttaaa aggaaataat taaaatatag actgtcattc
    30061 aatcaccagt caaaataaat agctctaatt gattgaacga ataacatcaa actcttcttc
    30121 ccaatccaaa agatagacta gattattttg tgcatgatta ctattttttg ggtgaaaaca
    30181 gagagctttt tctttttcct cttcggctct tgcttcagga aaatactcca agatctccat
    30241 atcactcatg atagttccat tgataaatag attacctaat a
//
LOCUS       DACVWI010000015        30158 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.015, whole genome shotgun sequence.
ACCESSION   DACVWI010000015 DACVWI010000000
VERSION     DACVWI010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 30158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30158
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.015"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(106..387)
                     /locus_tag="JBH85_02470"
     CDS             complement(106..387)
                     /locus_tag="JBH85_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014840986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945052.1"
                     /translation="MKNKLAVSILLFLLPTAAAMANCDLTKFRWDCDLPVQVKPSPGA
                     SSLVYCGSSYGYITKQQYDILARYQRASVNMVLDINGEYIDSPCIGAER"
     gene            536..1399
                     /locus_tag="JBH85_02475"
     CDS             536..1399
                     /locus_tag="JBH85_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945053.1"
                     /translation="MLSSTKEYLQALRDGKYLLFLQWPKFIAEYYGKSDKNQEADEMV
                     SLLIFEWLNNGFCLDDIKKFAILYAVHEMESRPLREGLSYALTTISIALFPCMVYLTN
                     NLQEHYITSKKLSSKEVLQLMTMNNAYLEKQRFVEFLGQEQDKFFTWVKEADSSAVSK
                     AFDQIYSVTYLKYLIEDYLSLLESAHLPTDQLKSSRISLVVRLAKYLHEQTELTQDVH
                     DEIAVYVKKLWEMQPAEFEEEFLKKISPLPFIDNTVRILTGLSARFFSILQPPSPPLN
                     INSDTDKNPKV"
     gene            complement(1500..1955)
                     /locus_tag="JBH85_02480"
     CDS             complement(1500..1955)
                     /locus_tag="JBH85_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HAU0945054.1"
                     /translation="MLLMSIFNTPVGNLEVAHDEHFIFNASFTDKSGAPAQNQLAHLI
                     ASELKAYFDNPHHRFQLPLKPQGSLFQQKVWNTLLVIPVGRTVTYGELATKLQSSPRA
                     VGQACKCNPLALFVPCHRVVGKHDLGGYMGNPNAISYKKNLLAHEAKII"
     gene            complement(1971..2336)
                     /locus_tag="JBH85_02485"
     CDS             complement(1971..2336)
                     /locus_tag="JBH85_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HAU0945055.1"
                     /translation="MTNIIDQINAEQMQGKEIPDFNPGDTVLVQVKVIEGNRERLQAF
                     EGVVIAKRNRGLNSAFTVRKISHNVGVERVFQTYSPIVDSITVKRRGDVRRAKLYYLR
                     NLAGRAARIKEKLSGKKGD"
     gene            complement(2363..3133)
                     /gene="trmD"
                     /locus_tag="JBH85_02490"
     CDS             complement(2363..3133)
                     /gene="trmD"
                     /locus_tag="JBH85_02490"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HAU0945056.1"
                     /translation="MGYEFLVALHLGVITLLPEIIQGIHYGVTGRAIEQGLVKIDCWN
                     PRDWSSRPYKQVDDKPYGGGPGMVMMYEPLHAAIKHARSEMKENCKTIYLSPQGKVVR
                     QNDLKQIAAQKQSLLFVAGRYEGIDERIISHHVDEEWSLGDFVLSGGELAAMVFIDAI
                     IRLIPGSLGHLGSAEQDSFMNGLLDCPHYTRPATINGLDVPDVLLGGNHKEIERWRRK
                     QSLGKTWLKRPDLLEKVQLSETDKQLLAEFKCEHGDSC"
     gene            complement(3115..3624)
                     /gene="rimM"
                     /locus_tag="JBH85_02495"
     CDS             complement(3115..3624)
                     /gene="rimM"
                     /locus_tag="JBH85_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HAU0945057.1"
                     /translation="MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVF
                     LNKQWQPLKLLTIEVRSKAIIAQIEGYPKRELVSALTNLDIGVQESQLAALAPGEYYW
                     YQLIGMSVINSKGDLFGKVVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINVDESQQV
                     ITVDWDMNF"
     gene            complement(3630..3890)
                     /gene="rpsP"
                     /locus_tag="JBH85_02500"
     CDS             complement(3630..3890)
                     /gene="rpsP"
                     /locus_tag="JBH85_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HAU0945058.1"
                     /translation="MVVIRLSRAGAKKRPFYHMVVTDSRKRRDGNYIERIGYFNPVAR
                     GQEVKLHIDMDKMTHWQKVGAQLSDRVSALLKEHSKKSETAA"
     gene            complement(3977..5353)
                     /locus_tag="JBH85_02505"
     CDS             complement(3977..5353)
                     /locus_tag="JBH85_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HAU0945059.1"
                     /translation="MFDNLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVA
                     LPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHDELIHVMGNERVELDYKTQPPAV
                     FLMAGLQGSGKTTSTAKLARYLKETENKKVMMASVDVYRPAAIHQLKVLAEQIDVAFF
                     DSDPNEQPIKIAQKALESARKQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVNPIETL
                     FVVDSMTGQDAANTAKAFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSG
                     EKIEALEPFHPERIASRILGMGDILTLIEEVERKADKQASEKLAKKLKKGKGFDLEDF
                     KQQLLQMNNMGGISGMMSKLPGVGQLPKQAMQQVNDKAMAQTIAIINSMTPKERRIPK
                     IIVGSRKKRIALGSGTQIQDVNRLLKQFEQMQKMMKKFTKPGGMQKMMRGIGGMAGLK
                     GMFPDDLK"
     gene            complement(5605..6279)
                     /gene="legA7"
                     /locus_tag="JBH85_02510"
     CDS             complement(5605..6279)
                     /gene="legA7"
                     /locus_tag="JBH85_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegA7"
                     /protein_id="HAU0945060.1"
                     /translation="MESLMPKAFTHLCKKVNLSLYNDTLTVYPKSSVLPKPIQIRSEL
                     DLLMVLLFSQMDCNSAQVDKFFMMRSNELGVYRFIHRDDTDHDLYHQDEFSMDDNHYH
                     AQFDKIIDEIKLENILGILEKHSLISSEEHVSFIEAYHKANTLPEDMPKLETTLSSPL
                     PVSSPSVHTTKKQPVVKEKEVDTPTTFAGLRVGFFLTSTKTTTKPLSRSHDDEKKTGM
                     DGHGFH"
     gene            6713..8416
                     /locus_tag="JBH85_02515"
     CDS             6713..8416
                     /locus_tag="JBH85_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HAU0945061.1"
                     /translation="MHSLYLGVVKVMAKIILVYANCVNSTAKGDFALAGQIAKDLVRE
                     KTSDDIDVVLTSTLDGIARFESLYGKAVDGRVIIEGTSVGLCALELFESVDNEVVAFI
                     EANRCKYAPSDILKRVLSPDSKFLFIGAANQKAIATGDKFTKSWLYISHKGDQPNVYE
                     HFDEDDSLIQSVGLGDDRLGLPSLPKVDELPEMNSTQSQKIPSGEYGFMYLAAVHGID
                     DVYLMNQYMSLTEMGQYVLVGEYAKQSKEVQMVLHSLQYKGSSVSLTMPQIFFHDSVD
                     NCLMRNMVSKSSGPLVVSTGVMSSIEAMQDGKLTYYQTMSNNTQFVASYLIAVKSICS
                     SDTTLFGSMPKLIIDLSNLLFAEKPLKESQMKEIKSLLGMSSVTSRLGEMNKRIIAKA
                     NGTVAGELLSFIGKPKTTQSHKQCISVCMSLRKSGETTSPIFDQALRRAAAWGRLFEL
                     KVLIASMSTSDLNKKDKTGNQYTALHWAVMQGHLDCARLLVKSGASVDIQDKSGKSPL
                     HYAIKRGDKETIKLLVQAGASLEIMDDSGAKPCDGSESWVPEYIKSCYEKSGHKSSSL
                     F"
     gene            8596..10140
                     /gene="ankG"
                     /locus_tag="JBH85_02520"
     CDS             8596..10140
                     /gene="ankG"
                     /locus_tag="JBH85_02520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkG/AnkZ/LegA7"
                     /protein_id="HAU0945062.1"
                     /translation="MNSLWIASGSRDMIYVLICIMLVCGLVVYQLMPKLLSYSTSLIS
                     KKQDTSELTHDGITNVLTQLGHPKFEGVCYGFTLNWALAVAQGKESFFYRQLHHLRTH
                     QFGLPETLQQIKEKKERNQSLSKDEKIIETLPQLGKKICIAQDPLQYKEKYKKLVWQP
                     DINSILKAINADSSVAKHIFYKTHSFLNQDEATEYLELLKRTGIREDVAVIISTADHA
                     MGFKLAGNVWRFININDLYQQDKNKPYFEFSSRNLVKELYRVCAENLQGSRLTVNTDF
                     VSVNPEEKLSRALQNLFPVFPVRTKTSYPERLAFFSMAATQGDMNSVKKCIHSGWSIF
                     SRQRLSDDSPILTAIYLGRRDVVRAMLSTSRHRVNQKRKSDSSTLLHIACRYGGSGIV
                     EDLLNIRGIKIDPRDSKGRTPLMYACKKSVVTEDRKLFNLLFAKGASLSIKDNDGLTA
                     LDHALKNEHTLAIQMIEERLEKEACAQENSTSRRFKFSETKGTLFQRGVKTISYQSQQ
                     PRFGMK"
     gene            10477..11880
                     /locus_tag="JBH85_02525"
     CDS             10477..11880
                     /locus_tag="JBH85_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAU0945063.1"
                     /translation="MSNKKHSLTIFSLTMITVGSVDSIRNLPATALFGSQLIFYFILG
                     ALFFLIPTALVSAELASGWARQGGVYIWVKEAFGKKSGFLAIWLQWIENVIWYPTILS
                     FVAGTIGYLINPSLTTNPYFLWAVIVSCFWGATIVNLRGMKSSAMFSNICSLAGLLLP
                     MSLIIGLGAVWIAQGNPLQISFDMPSIVPHLSDKGMWVSLTAIILSFCGIEIATVHAN
                     DVKDPQHAFPKALVYSVGIILSTLILGSLAIAVVLPQKDINLVAGIMQAFSAFFLKYH
                     MDWMMPVVAVMLVLGGLGGVSNWIIAPTKGLLVAAEEGNLPEVFQRTNGKGAPAMMLY
                     TQATIVTVLSALFLFMPSVNGSYWLLTALAAQLYMLMYLIMFVAAIKLRISQPYHPRP
                     FKIPGGMAGMLFVAGIGIIGVVTTLAVSFIPPEGINVGSATRYELTLIIGLLLMCAPP
                     FIASWLQAKEADLEPAV"
     gene            11870..12460
                     /locus_tag="JBH85_02530"
     CDS             11870..12460
                     /locus_tag="JBH85_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0405 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945064.1"
                     /translation="MLYNLTRQVKFNNPSCLCNFQKMGYIDELLEELSARLPELEWKI
                     NGLSSSISIHNLPKGIFSSVIEFNGPACIKEIQDDIHALQKHKDESIACFLAERIQKK
                     INVLVVLCQMDKKNNKPESKISFDLTTLSTRQQWIKTMEEKICALEEQYQAMRKTLEQ
                     MKSCSNPATILHLQTELGNVEKRLTLAKETLNRAIS"
     gene            12660..13001
                     /locus_tag="JBH85_02535"
     CDS             12660..13001
                     /locus_tag="JBH85_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HAU0945065.1"
                     /translation="MSDKFSHITKDITTQLAKFRKEMPELMTGFSSLAQAATKDGALD
                     KKTKELIAMALAVAKQCPGCIGFHSQTLVKLQATREELLETLGMAVYMGGGPSLMYAA
                     EALEAFEEFSK"
     gene            complement(13214..13657)
                     /locus_tag="JBH85_02540"
     CDS             complement(13214..13657)
                     /locus_tag="JBH85_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase"
                     /protein_id="HAU0945066.1"
                     /translation="MRLLFISLILASGYLQADTINNYMNIANNIPQMEMKADPQAQAW
                     ARSARHVLTITSESIAETLIQANEAAKTQGKPIFCLPQGVQLNSFVMNELIQQTYKEI
                     SSQQSDKDKMTVSQVALLGLSKKYPCEPSPQEKQIQHVASLLSPQ"
     gene            complement(13676..14224)
                     /locus_tag="JBH85_02545"
     CDS             complement(13676..14224)
                     /locus_tag="JBH85_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HAU0945067.1"
                     /translation="MNKQMQWHLFGNTSGLLIICCLLILAFLDQFIFYELPCPICILQ
                     RICFIAVGLCFVMNLMLGIRASHYGLMLLATLLGLSISVRQMYIHLTPGDPGYGGLIF
                     GLHLYTWSAIIFLVIILLIAGALILDKGFMPDYKVRSKSAKVMIWVFFILILANGIST
                     FLECGPHECPDNPSKYYLLNNN"
     gene            complement(14641..14844)
                     /locus_tag="JBH85_02550"
     CDS             complement(14641..14844)
                     /locus_tag="JBH85_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin transmembrane helix small protein"
                     /protein_id="HAU0945068.1"
                     /translation="MFTKIFIIFVMILIVASLASGLFYLVKDTDKSKRTVKALTVRIA
                     ISLSLFVFLFIAFKLGLIQPHGI"
     gene            14912..15640
                     /locus_tag="JBH85_02555"
     CDS             14912..15640
                     /locus_tag="JBH85_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HAU0945069.1"
                     /translation="MPSLTCFNFRFTSNWPMLILTAVCFFLFISLGFWQIHRADEKTA
                     MITAQQALAKQEPIIWQPGQKLPEQYQRISIEGAFLPKLFLLDNQHYQHQFGYDVVSP
                     MLLDDDSIVMVDRGWVSGDITRRTFPNVQTPNGKFKLFGMVYFPSKKQWVLGPSFEEK
                     ENKVTLLELIDEEILKQLLQKKVYPFIIRLDKNELFGFVREWEIVSMPPQRHFAYAIQ
                     WFAMALVILIIFVIFNLKKNEKTI"
     gene            15624..16169
                     /locus_tag="JBH85_02560"
     CDS             15624..16169
                     /locus_tag="JBH85_02560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945070.1"
                     /translation="MKKPYKYMTLLLLVVIFAAPGITAYLFYKHPSWLGTSKVNKGIL
                     LSPPIALKPLDSSAKWRIIYWNPNGCDKTCLKQLNMLGRVRLSFGRKLYQVDEWLLLS
                     NKDSLIAEELKPILKEQDIHVAALSLTEMSKLSTLYPEAKIFIANPDNYLILSYQPGC
                     NPGDIYKDLKLLLNTTEIKSG"
     gene            16150..17181
                     /locus_tag="JBH85_02565"
     CDS             16150..17181
                     /locus_tag="JBH85_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HAU0945071.1"
                     /translation="MKLRADKLMSNSSIRLAATLAVFLAFFVVMLGAYTRLTDAGLGC
                     PDWPGCYGRMVLPGADKGLQEAQSQYPDLPIESKKAWTEMAHRYAAGTLALLIFFIAF
                     QVWFKRCQDQDLPWHLPLALFMLVVFQAALGMWTVTLKLLPVVVMGHLLGGMLIVACL
                     CRFRLQIAQLKGQNLPEWRPWLRLGIVIILLQIALGGWVSANYAGISCIGFPLCNGVW
                     FPELHFTKGFNLFSTIGANYQGGVLESEVRASIQFIHRIGAILTATYLLALSLIIVFK
                     THSIYLRATAIIMAMLVLLQFTLGIMNVIHLLPLKVAVAHNGVAALLLAVAFCSLHFT
                     QDREVSHAY"
     gene            17171..18055
                     /locus_tag="JBH85_02570"
     CDS             17171..18055
                     /locus_tag="JBH85_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HAU0945072.1"
                     /translation="MRTEYAARLPVDWRDYVELCKPRVVLLMLLTVIVGMYLAAPGWV
                     SLRLIAFTLLGIGLCAGSAAAINHLVDRHIDSIMARTKKRPVAYGRVSVKQALWFAVI
                     IGLMGLSLLILFVNQLTALLTFVTLIGYAGVYTGYLKRATSQNIVIGGLAGAAPPLLG
                     WTAVTDQLDPQALLLVLIIFTWTPPHFWALAIYRYKEYQDAEIPMLPVTHGIQFTKLN
                     IYLYTVLLLVVSLLPFVVSMSGWIYLLGALVLGIRFLVWAHKLYFTDKPVVAMQTFRF
                     SILYLMLLFVFLLVDHYF"
     gene            18065..18706
                     /locus_tag="JBH85_02575"
     CDS             18065..18706
                     /locus_tag="JBH85_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HAU0945073.1"
                     /translation="MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGT
                     YLENPRTVNNFSLTGTDQKVFDNSSLQGRWTLVFFGFTNCGYLCPTTMAELGKMYRIL
                     EKKGVKNLPQVVMISIDPQRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAY
                     AKINSKESSEPENYDIQHSGAVMLFNPQGELNAFFTTPHHADLLAKDYVLLVS"
     gene            19073..19981
                     /gene="rimK"
                     /locus_tag="JBH85_02580"
     CDS             19073..19981
                     /gene="rimK"
                     /locus_tag="JBH85_02580"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HAU0945074.1"
                     /translation="MKIAILATNPHLYSHKRLKAEAEAAGHEVKIINPLYCYMNVAAS
                     NPKVHYRGGAPLPHFDAVIPRIGASITYYGTAVLRHMETMGMYTLNESIAISRSRDKF
                     RSLQLLARKGIPMPLTSFAQSPDDTEDLIHMVGGAPLVIKLLEGTQGKGVILADSHQS
                     AVSIINAFKEMHANILVQEFIEESRGTDIRCFVIGEKVVAAVKRQAKDGEFRANVHQG
                     GKAVKVKLSPQERAIAVSAAKTMGLRVAGVDLIRSNHGPLVLEINSSPGLEGIEKATN
                     INLAGKIIEYIEKKAKPISSNHRFHG"
     gene            complement(19985..20230)
                     /locus_tag="JBH85_02585"
     CDS             complement(19985..20230)
                     /locus_tag="JBH85_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945075.1"
                     /translation="MLNKRFSERLNKELDNIGVPEATAERIEILSKLIKIPKFKAEAL
                     LNGITSPDEAVLKTLAQELEVNADWLIGKSDSKSGAH"
     gene            20548..22038
                     /gene="zwf"
                     /locus_tag="JBH85_02590"
     CDS             20548..22038
                     /gene="zwf"
                     /locus_tag="JBH85_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HAU0945076.1"
                     /translation="MLLKAESKYPCDLILFGTLGDLSCRKLLPALYQLELANLLHEKT
                     RIIGCAREELDFSAYVDLIKNKIQQFLFDEIDEAVWLRFIKKLAYCKLDLNQSDDYQK
                     LTDYVNPSERVVISYLAIPPSLYSQTCRSLARLNLTQKPSRVVLEKPIGHDLPSSVAT
                     NEQVACFFAEDQIYRIDHYLGKETVLNLLVLRFANSIFSTNWDNRVIDRVEISVAEEI
                     GVEGRWEYYDKSGQVRDMLQNHLLQILSLVAMEPPLSLSAESIRSEKLKVLKSLRFIN
                     KSNVHDHTVRAQYVANTLANGKKIPGYLEEVGANQASTTETFVAIKAYVDNWRWSGVP
                     FYMLTGKRLPKKQSEVVIYFKPQPYNIFHPLNEELYPNQLIIRLQPDEGVEVRIMNKI
                     PGLGERMMLHDSKLDLNFHHSFKTQRIADAYERLLLEVMLGNQYLFVSREEIEQAWQW
                     IDSIVSAWEEDNIPLYTYPACTWGPKEVIRLFNGQAHVWGDHNAVS"
     gene            22007..22738
                     /gene="pgl"
                     /locus_tag="JBH85_02595"
     CDS             22007..22738
                     /gene="pgl"
                     /locus_tag="JBH85_02595"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HAU0945077.1"
                     /translation="MFGVITMQFHNFRDAKQLIHDMVEKLRTILSDAIKRRGQAFLVV
                     SGGRTPIDLFKELALADLPWEKVVITLTDERCVNLFDPHRNELLVREFLLQEKAKKAK
                     FISLFDEKEDPLGHLNEVNSQIDSLPMFDAVVLGMGEDGHTASLFPCSDELSAGLDDK
                     ANAVLIVKPRTASFQRVSLSKRRLLNSSTIFLHLVGQRKRVVLEQAMATNNPEILPIC
                     AILNAPDANVQVMYAPSDEEKECIL"
     gene            22726..24564
                     /locus_tag="JBH85_02600"
     CDS             22726..24564
                     /locus_tag="JBH85_02600"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HAU0945078.1"
                     /translation="MHPVINQVTENIQNRSAARRAAYLNQIDKARTKGPQRSILHCGN
                     LAHGFAACAKQDKAILRGNAKANIAIVSAYNDMLSAHQPYAVFPDLIKEAISAAGGVA
                     QFAGGVPAMCDGITQGQPGMELSLLSRDVIALSTAVALSHNMFDGGLLLGICDKIVPG
                     LLMAALAFGHLPFIFVPAGPMPSGISNQEKARIRQLYAAGQVDKNALLDVEAASYHTA
                     GTCTFYGTANSNQLVIELMGLQLPGSSFVNPNTPLRNELTKAAAYQILSLTDLNSDYM
                     PIGQMLDVKNIVNGIIGLLASGGSTNHTMHLVAIAAMAGYWVNWDDFAQLSAIIPLIA
                     RIYPNGQADINHFQRAGGMAYFVKTLLEADLLHPDVNTVVGFGLDKYTQQPQLIDNRV
                     VWVNGPDSSSNNEVLTSATDPFKPQGGLQVLSGNLGRAIIKTSSLYDEHYVIEAPAVV
                     CSSQEEFEHLFNQGLLNKNCVVVVRFQGPKACGMPELHQLTPKLGVLMDKGFHVALVT
                     DGRMSGASGKVPAAIHVTPEAVDGGGIAKIETGDMILIDCERGILQLLVSDEELAGRS
                     PVAIEGYSSVLGMGRELFGNLRLHFTGAEQGACSLFKGNEFFYDAS"
     gene            24539..25546
                     /gene="glk"
                     /locus_tag="JBH85_02605"
     CDS             24539..25546
                     /gene="glk"
                     /locus_tag="JBH85_02605"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HAU0945079.1"
                     /translation="MNFFMMPHDLAQYAIVADIGGTFARFSRVNLVNLQMDKIEISPC
                     AEFISLESALLTYKNRHSLQEIKHIAIAIACPVIDDLVSMTNCHWQFSITELKQRLGL
                     EVLEVMNDFTAIAMSLPVLSTQDLVQIGNGYLDASKVRVVLGAGTGLGVAYLIPHQHH
                     YSAFAGEGGHADWGAKTEQEWFIYRYLKSKYSHVSYERLLSGQGLENLYQALAAYHSK
                     KVEFLSAAQIISLALNQECFIAHKAVAQFFSSLGSFAGDLALTYGAFGGVYIAGGIMP
                     RLLSLVHQSDFRIQFEDKGRFSDFNALIPTYVIAAAQPGILGASVSLKQILTGASHVL
                     F"
     gene            25533..26195
                     /locus_tag="JBH85_02610"
     CDS             25533..26195
                     /locus_tag="JBH85_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HAU0945080.1"
                     /translation="MSFSEWKTQPGAVFAASPVIPVIVIKELEDALPLAEALFAGGIH
                     VLEVTLRTPVAIKALELLINTFPDELIGAGTVITPGQFHDVVAAGARFAISPGQTREL
                     LIAGQKSEIPLIPGVASVSELMEGLGMGYNHFKFFPAAAAGGIPMLKAISGVFPQVKF
                     CPTGGINSKNYEEYLCLPNVACVGGSWIVPEEAIKNHNWSLITELCMAVSSQKRELCS
                     QN"
     gene            26308..27729
                     /locus_tag="JBH85_02615"
     CDS             26308..27729
                     /locus_tag="JBH85_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HAU0945081.1"
                     /translation="MAWIVAIIGSIAGFLFGYDEGIIAGSLGLVKNHFNLNATHIGVM
                     ASALPFGALFGSLLIGAFMASKCVKRFGRRSLLSFAGFLFFVGALGAGFAETVSVLIL
                     SRLILGLAIGMASVLTPLYLAETAAVQSRGAVVAIYQLALTVGIVCSYSVNYLLIEQQ
                     AWRAMFASSAIPALLLTLGILFMPESPRWLCSVGRHGAAANSLRKLRGKQSVEQELKD
                     IEATLANEPKQGNWLLLFQKPLLPVLMLGTILFCLQQLSGINVVIYFAPEIFKNLGLG
                     STTGQILATMGIGLVNLLVTIIAILYVDKLGRRKLLLLGFAGTSLSLFALSLFSLNHV
                     AWLSYLSVICLMVYIFSFAISVGPIPHIAMAEIFPLHVRGAGMGMSSMSNWLFNTIVI
                     FSFPVLHQMFGIEMTFVLYAVICFLGFIYAYIYMPETRNISLEQIETYIMSGKPLRFL
                     GREDEEVNAVSTKSESSLLASTN"
     gene            complement(27819..29168)
                     /gene="legY"
                     /locus_tag="JBH85_02620"
     CDS             complement(27819..29168)
                     /gene="legY"
                     /locus_tag="JBH85_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegY"
                     /protein_id="HAU0945082.1"
                     /translation="MATFFFKTNYYQEIMLKRIFFLMIFFVSQTMASVFTHEEVQILK
                     KHFLNNFQTNGAIVASPSQYNPNYYYDWIRDSAIAMGLVETWYEASQSARYKKLLLEY
                     VSWTEKIQHQADPIAGQDILGEPKFYINGNPFDGEWGRPQNDGPALRASVLIRFAQQL
                     LDHNEIDYVKSHLYNNTMDPQSMGTIKMDLEYIAHHWQDANFDLWEEVYGHHFFTAMA
                     QQKALTDGAILAHQLHDRQAAVFYEMQANLINSRLKQHLDHQNKIIQATLLPHPGPQK
                     TLELDSSVMLGILINPQKEGVFAPHHTFVQNTAKALHEQFNLMFPINKNRSGAILFGR
                     YPGDTYDGYQTNSIGNPWFILTATMAEYYFTMAHNLSPNSINKLHIQNYLKKGDNYLR
                     LIKQYGPDLNLSEQINLNTGVQQGATSLTWSYVSVLRAIHLREQLENRIKTTGWNTY"
     gene            complement(29294..29530)
                     /locus_tag="JBH85_02625"
     CDS             complement(29294..29530)
                     /locus_tag="JBH85_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0945083.1"
                     /translation="MSIIVNLDVMMAKRKCRLRDLAEAIGITEANLSILKNGKAKAIR
                     FATLEAICAYLHCQPGDLLEYQSIEDNHLIKDRA"
     gene            complement(29617..30156)
                     /locus_tag="JBH85_02630"
     CDS             complement(29617..30156)
                     /locus_tag="JBH85_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HAU0945084.1"
                     /translation="MKKIKSVSHLLFLLFKTLAYGLPLVTTYFILFHFESMLNWGGWH
                     SLLSTPVKDPSHFSLLHRFIILLIEALPLSINVLICHQLAKLFRLYEHGYLFEEENIR
                     LIKNISIYLISGELIQLLYQPLITAALTFTNPSGQRIASITLGTANLSTLITAFIILI
                     ASWIIKEAHKLKTDALLTI"
BASE COUNT         8728 a         5433 c         6305 g         9692 t
ORIGIN      
        1 tagccacaag cagaaacttc tgattttgaa taagaaattt gctggaaata ataatattcc
       61 ttttcttttt ctcattgttt attttaagtc attgctgcaa taattttaac gctcggctcc
      121 tatacacggg ctatcaatgt attcaccatt gatatccaaa accatattga cactggcgcg
      181 ttgatagcga gccagaatat catattgctg ctttgtgata tagccgtaag agcttccaca
      241 atacactaga gaggaagcgc ctggactggg cttaacctgt acaggaagat cacaatccca
      301 tcgaaacttg gttaaatcac aattagccat ggctgcagct gttggtaaca ggaataataa
      361 tatactcact gctaatttat ttttcatgga atcccccgcc tgatttgtcg ttttacttta
      421 agtataggat aacaattgat gtgcgtatgt tgtttaacat gaaataattt ttcacaagat
      481 ttttagtatt gttaatgtta taaattgaat aatcagattt tggtaatgga taactatgct
      541 ttcatcaaca aaggaatatc ttcaagcttt acgtgatgga aaataccttc tatttctgca
      601 gtggccaaaa tttattgcag aatattatgg taaaagcgac aaaaatcaag aagctgatga
      661 aatggtgagc ttgctcatat ttgaatggtt aaataatggc ttttgtttgg atgatattaa
      721 aaaatttgct attttgtatg ccgttcatga aatggagtcc aggcctttaa gagagggatt
      781 atcctatgca ctcactacaa tttctatcgc tctttttccc tgtatggtgt atttaacaaa
      841 taatctgcaa gagcattata ttacttcaaa aaaattatca agtaaggaag tgctccaatt
      901 aatgactatg aacaatgctt atcttgagaa gcaacggttt gtcgaatttt tagggcaaga
      961 gcaagataaa ttttttactt gggttaagga agcagactct tcagcggttt ctaaagcgtt
     1021 tgatcaaatt tattctgtaa cctatttgaa atatttaatt gaagattatc ttagtttatt
     1081 agagtctgca cacttgccaa ctgatcaatt aaaatcttct cgcatcagct tggttgttcg
     1141 attagccaag tatctccatg agcaaaccga attaactcaa gatgtccatg atgaaatagc
     1201 cgtgtatgta aaaaagctat gggaaatgca gcctgctgag ttcgaagagg aatttttaaa
     1261 aaaaatttcg ccgctgccgt ttatcgataa tactgtacga atattaacgg gattaagcgc
     1321 cagatttttc agtatattac aacctccttc cccacctttg aatatcaatt ctgatacgga
     1381 taagaatccc aaagtttaat ctcacacgac ttgctaatct cttcgttaag aatatttttt
     1441 gccttggtgc ttttgtaagt tctgatctat gtaatatcga tttttataaa cttaattcat
     1501 cagatgattt ttgcttcatg agcgagcaga ttttttttat aagaaatggc gtttggattt
     1561 cccatgtatc ctccaagatc atgcttccct actactctat gacaaggaac aaataaagcc
     1621 agtgggttgc atttacaggc ttgtccaact gctcttggac tactttgcag ttttgtagcg
     1681 agttctccat aggtaactgt tctgccaacg ggaatgacta acaacgtatt ccaaaccttt
     1741 tgctggaaga ggcttccctg aggtttcaga gggagctgaa aacggtgatg gggattgtcg
     1801 aagtaagcct tcaattcact ggcaattaaa tgggccaatt ggttttgggc tggagcgcca
     1861 gatttgtctg tgaaggacgc attgaaaata aaatgctcat catgggctac ttccaagtta
     1921 cccacaggtg tattaaaaat agacatgagg agcattttac cattcaagaa ttaatcgcct
     1981 ttcttcccag ataatttttc tttaatacga gcagcgcgac cggcaagatt tcttaagtaa
     2041 tataatttgg cacgacgaac gtcaccacgt cttttcaccg taatactatc aacaatagga
     2101 ctgtaggttt ggaaaacgcg ctctacaccg acgttatggg aaattttacg tacagtgaaa
     2161 gcggagttaa gtccacggtt acgcttggca atcacaacgc cttcaaatgc ctgtaaacgc
     2221 tcacggttac cttcaataac ttttacttgg accagaacag tatcgcctgg gttgaaatca
     2281 ggaatttctt tgccttgcat ttgttcggca ttaatttggt caataatatt agtcatggac
     2341 tactcctcaa attggctcat cctcagcagg aatcgccgtg ttcgcattta aactcagcaa
     2401 gcaattgctt gtctgtttca cttaattgta ctttctcaag taaatccggg cgtttgagcc
     2461 aggttttacc cagggattgt ttcctacgcc agcgttctat ttctttatgg tttcctccta
     2521 ataaaacatc aggtacatcc agtccattta tagttgctgg ccgagtataa tgtgggcagt
     2581 ccagtaatcc attcataaat gaatcttgtt ctgctgaacc caaatgccca aggcttccag
     2641 gtatcaagcg aattatcgca tcaataaata ccattgcggc caattcaccg ccacttaata
     2701 caaaatcccc tagcgaccat tcttcatcta cgtggtgact aatgattcgc tcatcaattc
     2761 cttcatatct ccctgcaaca aatagcaagg attgtttttg ggctgctatt tgttttaaat
     2821 cgttctgtct aactaccttg ccttgagggc ttaagtaaat tgttttgcag ttttccttca
     2881 tttcactgcg cgcatgcttt attgcagcat gcaatggctc atacatcatg accattcctg
     2941 gtccaccacc atagggcttg tcatccactt gcttataagg tcttgatgac caatctctag
     3001 gattccagca atcaatttta accaagcctt gttcaatagc tcggccggtt accccataat
     3061 ggatgccttg tattatttca ggcaacaggg tgatgactcc aagatgtaat gccactaaaa
     3121 attcatatcc caatcaacag tgattacttg ctggctttca tcaacattga ttacaaattg
     3181 tcctggaaga tagggaatta aatgtctttt ttcaccttcc acaacaagta catcattcga
     3241 gccagtaggc atgatttcaa caacttttcc aaaaagatcg cctttggagt ttatgacact
     3301 catgccaatc agttgatacc agtaatactc acctggtgcc aaagctgcaa gctgtgattc
     3361 ttgcacacca atatctaaat tggttaatgc agagactaat tcacgcttcg ggtacccttc
     3421 aatttgagca ataatcgctt tacttcttac ttctattgtc aataacttaa ggggctgcca
     3481 ctgtttattt aaaaaaacgt gccagtcatt gtaccgcaag atattatcag cagggtctgt
     3541 gaaggaatgt accgtgacaa agcctttaat accatggggt cggccaaaac ggccgatgat
     3601 aacccaattt gtcttgttat tcactttggt taagcagctg tctctgattt tttgctatgt
     3661 tcttttaaca aggcactgac tcgatcagat aactgggccc caactttttg ccagtgggtc
     3721 attttatcca tatcaatgtg aagctttact tcttgtccac gtgctacagg gttaaaataa
     3781 ccaatacgct caatgtagtt tccatcgcga cgtttgcggc tgtcagtaac aaccatgtga
     3841 taaaaaggac gctttttagc gccagctcgt gataaacgta taacgaccat tattttcctc
     3901 tactgttaga gtggttacat aaaaatgccg tgtattgtac gaaaattaca tcgacatgtg
     3961 aagtaattct tacgaattat tttaaatcat ctggaaacat gcctttcaat ccggccatgc
     4021 caccaattcc tctcatcatt ttctgcattc cgcctggttt ggtaaatttt ttcatcatct
     4081 tttgcatctg ttcaaattgt tttaatagtc tgttgacatc ctgaatttga gttccagagc
     4141 ctaaagctat gcgtttttta cgtgagccta caataatttt gggtatacgg cgttctttgg
     4201 gagtcataga gttaatgatt gcaatggttt gagccatcgc cttgtcattc acttgctgca
     4261 tggcttgctt tggcaattgc cccactccgg gtaatttgct catcatcccg gagatacccc
     4321 ccatattgtt catttgcaat aattgttgtt tgaaatcctc caagtcaaac cctttccctt
     4381 tttttaattt tttggccagt ttttcgctgg cttgtttgtc ggctttgcgc tctacctctt
     4441 caatgagagt taaaatatct cccatcccca atattcttga tgcaatccgt tcagggtgaa
     4501 agggttccaa ggcttctatt ttttcaccac tccctataaa ttttataggt ttccctgtga
     4561 tttgtttgac agatagcgcc gctcctcctc gagcatcgcc gtccgttttg gtcaaaatca
     4621 caccagtcag agggagggct tcatgaaatg cttttgcagt attggcagcg tcttgtcctg
     4681 tcatgctgtc aacgacaaaa agggtttcga ttggattgac tgctttatgc aaagacttga
     4741 tttcagacat catgtcttca tcaacgtgca ggcgccctgc tgtatcgaga atgagaacgt
     4801 caacatactg ttttctggcg ctttccaatg ccttttgagc tatttttatt ggttgctcat
     4861 tagggtctga atcaaagaag gcgacgtcaa tttgttcggc taatactttc agttggtgta
     4921 tggcggctgg tctgtatacg tcaacgcttg ccatcatgac ttttttattt tcggtttctt
     4981 tcaaataacg ggcgagtttt gctgtactcg ttgttttacc agaaccttgt aagccggcca
     5041 ttaaaaagac agcaggcggt tgggttttgt aatcaagttc aacccgctca ttgcccatga
     5101 cgtgaatgag ttcatcatgc acgattttaa tgaatgcctg atcgggattt aaactggtta
     5161 agacttcctg cccaagagac ttttgcttta cttgctcaat aaactctttg ataacaggca
     5221 aagccacgtc tgcttcaata agagacagtc ttacttcacg caaggcatgt tggatattgt
     5281 cttccgtcag gcggccttgg cctcgcaaat ttttaaaggt tcgggttaag cgttcggtta
     5341 aattatcaaa catagtgagt agtacccaaa aaatgactac tataacatag agagttaaaa
     5401 gtataccaca gagaagagcg cattaatgat tagctctaat cgatagcagt gaatcaatca
     5461 gggttatctt tatgattttg taattagagg ctgtagagta atttattagt tactctacag
     5521 tttttcaggt tttggataaa tcaccataaa ttgttaagta aaccaataga acgatcttca
     5581 ctatggctta tcaaactata tcaattaatg gaacccatgc ccatccattc cggttttctt
     5641 ctcatcatcg tgagatctgg ataaaggttt tgttgttgtt tttgttgaag taaggaaaaa
     5701 tcctactctt agccctgcga aagtggttgg agtatctact tctttttctt tcacaacagg
     5761 ttgcttttta gttgtgtgaa ctgaaggaga ggatacaggc aaaggactgg acagagttgt
     5821 ttccagtttt ggcatatctt cggggagagt attggcttta tggtaggctt cgataaagct
     5881 tacgtgttct tcagacgaaa taagagaatg cttttctagt attcccagaa tattttccaa
     5941 tttaatctcg tcaataatct tgtcaaattg tgcatgataa tggttatcgt ccatgctaaa
     6001 ttcatcttga tgatacaaat catgatcagt gtcgtcacga tgtataaagc gatagacacc
     6061 aagttcattc gaacgcatca taaaaaattt atcaacctgt gcactattgc aatccatttg
     6121 agaaaacaac agaaccataa gaagatcaag ctcactacgt atttgaatag gttttggtag
     6181 cacagatgat ttagggtaga cagtcaatgt atcgttatat aaactgagat tgactttttt
     6241 acacaaatgg gtaaatgctt taggcataag ggactccaat gatttttttt aaaaaaaagt
     6301 aattgtctat attttggacc tgtagtttaa aacatcaaca ttaaggtttt cttaagaaga
     6361 aataagaagt gctatcaaca aattgccata actaatctgt tgcttcgagg atattggatt
     6421 ttctgtacag ccaagatatc gatttgtatt gaatcgcccc gtttccatac tgatactttc
     6481 tgatgagata acagtaatgc acaaccaaca cgaaaattaa aaaaatatag aataagccat
     6541 tgattttaaa atttttcata aactctcata aaaacacttc gattaaaaat acattatctc
     6601 tatttttcaa tgtttatttt caacaagcat ttatctcatc tttttatttg ctaataaaaa
     6661 aacaatttgc ttatttttct taatattttc ttaatgattt ttagttatta ttttgcacag
     6721 tttgtatcta ggtgtggtga aagttatggc taaaataatc ttggtgtatg ctaattgtgt
     6781 taattcaact gctaaaggcg attttgctct ggctgggcag attgccaaag atttagttag
     6841 agaaaaaact tctgatgata tcgatgtggt tttaacctct actttggatg gaattgcaag
     6901 atttgaaagc ctttatggca aagcagttga tggccgtgta ataattgaag ggaccagcgt
     6961 aggcttatgt gccttggaat tatttgagtc ggtagataat gaagtggtgg ctttcattga
     7021 agcaaaccga tgcaaatacg caccaagtga tattctaaag cgagttctct ctcctgacag
     7081 caaattttta tttattggag ctgctaacca aaaggcaata gcaacagggg ataaatttac
     7141 taaatcctgg ttgtacataa gccataaagg tgatcagcct aatgtttatg agcattttga
     7201 cgaagacgat tctctaatac aaagtgtagg tttaggtgat gatcgattag gattaccatc
     7261 cttgccaaaa gtcgatgaat taccggagat gaactccaca caatcacaaa aaataccaag
     7321 cggcgagtat ggatttatgt atcttgccgc tgtacatggg atagatgacg tttatttgat
     7381 gaatcaatac atgtctttaa ctgagatggg gcaatatgtt ttggtgggtg aatatgccaa
     7441 acaatcaaaa gaagttcaaa tggttctgca cagtctacag tataaaggta gttcggtatc
     7501 actaacgatg cctcagattt tcttccatga ttcggtcgat aattgtttaa tgcgaaacat
     7561 ggtttcaaag tcttctggtc ctttggttgt ttccacaggg gttatgagtt ctattgaggc
     7621 gatgcaagat ggtaaattaa cgtattatca gacaatgtct aataacacgc aattcgtggc
     7681 ttcttatttg attgctgtga aatccatttg ctccagtgat acaacgttat ttgggtctat
     7741 gccgaaatta attatcgatt tgtctaattt gcttttcgca gaaaaaccgt tgaaagaaag
     7801 tcaaatgaaa gaaattaaat ctctcttagg tatgtcgtca gttactagtc gcttgggaga
     7861 aatgaataaa agaatcattg caaaagcaaa cgggactgtt gctggtgagc ttttaagctt
     7921 tattggaaaa cctaaaacga cgcaatcaca taaacaatgc atcagcgttt gcatgtctct
     7981 tcgcaagagt ggtgaaacta cgtcgcctat ttttgatcaa gcattacgca gagcagcagc
     8041 ttggggtcgc ttgtttgaat tgaaggtgtt gattgcatca atgtcaactt ctgatttaaa
     8101 taaaaaagat aaaacaggta atcaatacac agcacttcat tgggctgtga tgcaggggca
     8161 tttagattgt gcaagattat tagttaaatc tggcgcctct gtcgatattc aagacaagtc
     8221 tggtaaatcg cctttacact atgcgattaa aagaggagat aaagaaacca ttaaattatt
     8281 ggttcaagca ggagcttctt tggaaattat ggatgattca ggagcaaaac cttgtgatgg
     8341 atcagagtct tgggttcctg agtatattaa atcctgttat gagaaaagtg gccacaaatc
     8401 tagtagctta ttttaaatta atcttaatgg cagatttata gccctgaatt acccggagat
     8461 gaaatccatg atccgggtaa ttttttatta tttataaagc gtggatgatt ttatttgctt
     8521 ttctggtatt accctgtttt ttgaagaaaa tttaacctcg aaccccctcg acttatttta
     8581 tgggttaatt ttatactgaa ttcattatgg atagcatcag gttcaaggga tatgatttat
     8641 gttttaattt gtattatgct agtttgcggt ttggtcgtgt atcaactcat gcccaagctc
     8701 ctgtcgtatt ctacttcttt gatctccaaa aaacaggaca ccagtgaatt aacacatgat
     8761 ggtattacga atgtcttaac acaattaggt catcccaagt ttgaaggagt ctgttatggc
     8821 ttcactctca attgggcatt ggcggtggct cagggtaagg aatctttttt ttaccgccaa
     8881 ttgcaccatt tacgaaccca ccagtttggt ttgcctgaaa cattacaaca aattaaagaa
     8941 aagaaagaaa ggaaccaatc attaagcaaa gatgagaaga tcattgaaac tttgcctcag
     9001 ttaggaaaga aaatttgtat tgctcaagat cccttacaat ataaagagaa atacaaaaag
     9061 ctggtatggc agcctgatat taattccatt ttgaaagcca taaatgccga ctcttcggtt
     9121 gcaaagcaca ttttttataa gacgcatagt tttttaaatc aggatgaagc aacagaatat
     9181 cttgaattat taaaaagaac aggcatcaga gaggatgttg cagtaattat cagtaccgcg
     9241 gatcacgcca tgggatttaa actggctggt aatgtctggc ggtttattaa catcaatgac
     9301 ttataccaac aagacaaaaa taaaccttac tttgagttct cgtcccgaaa cctggttaaa
     9361 gagttgtatc gtgtttgtgc cgaaaacctt cagggaagtc gattgaccgt gaataccgat
     9421 tttgtttcag ttaatcctga agaaaaactg tcaagagcac tgcagaattt attccctgtg
     9481 tttccagtca gaaccaaaac ttcttatcct gaacgattgg cttttttttc catggcagca
     9541 actcagggtg atatgaattc tgtaaaaaag tgtattcatt ctggatggtc aattttttct
     9601 cgacaacgac ttagtgatga ttcacctatc cttacagcca tctatttagg aagaagagac
     9661 gtagtacgtg ccatgctgag cacttctcga catagagtta accaaaagcg taaaagcgac
     9721 tcttctactt tgctccatat tgcctgtcgg tatggtggta gtggtatagt cgaagatctg
     9781 ttgaacatac gtggaattaa aatcgatccc cgagacagca aggggagaac gccgctcatg
     9841 tacgcctgta aaaaatctgt agtgacggag gatagaaaat tatttaattt gttgtttgca
     9901 aaaggcgctt ctctttctat taaagataat gacggtttga ccgcacttga tcatgctctt
     9961 aaaaatgagc atacccttgc aatccaaatg atcgaggaga gattggaaaa agaagcttgt
    10021 gcgcaggaga actcaacctc tcgtcgattt aaattttctg agacaaaagg tactttgttc
    10081 cagagaggag tgaaaactat ttcttatcaa tcacagcaac ctcgttttgg tatgaaatag
    10141 gagaataaaa tttgtctttt tagcacttca agctttttgt ctcgattttg gggttttgct
    10201 ccctattagt aaacaaacca cttaatgtgc attagaaaga ttcttgttat taattttata
    10261 tacagaatac tggtttttaa tgacataaca tcatatgatg ttttcgcatc ggacctgtac
    10321 tgaaatgaaa attctcaatg cctgttgggt caattttgta ggtcagtata ctaaggggta
    10381 tatttggtta ttttttattc gattattaag gtttccttaa gcttatttct ttataataaa
    10441 cttttgattc caaatagtcc tcactgaagg aatacaatga gcaataaaaa acattctctc
    10501 actatattta gcttgactat gattaccgtt ggctctgtag acagtatccg taacttgcca
    10561 gctactgcat tatttgggag tcaattgatt ttttatttta tcctgggtgc cttgttcttc
    10621 cttatcccaa ccgcattggt ctcggcagag ttagcttctg ggtgggccag gcagggtggc
    10681 gtttatatct gggttaagga agcttttggg aaaaaatcag ggtttttagc catttggttg
    10741 caatggatag aaaatgtgat ttggtatccc acgattctat cgtttgttgc gggaacaata
    10801 ggttatctta ttaacccctc tttaactacc aatccttatt ttctttgggc agtcattgtc
    10861 agttgctttt ggggagcaac cattgtgaat ttgcgcggta tgaaatcatc ggccatgttc
    10921 agtaatattt gttctttggc aggattatta ttacccatgt ctttgatcat tggtttgggt
    10981 gctgtttgga tagctcaagg taaccccttg caaatcagtt ttgacatgcc cagtattgtt
    11041 ccccatttat cggataaggg catgtgggtt tcattaaccg ccatcatatt gtcgttttgc
    11101 gggatagaga ttgctacggt tcatgctaat gatgtgaagg atccccagca tgctttcccc
    11161 aaagccctgg tttattctgt agggatcatt ctgagtactt tgattttagg ttcattagcg
    11221 attgcggtag tactcccaca aaaggatatc aatctggttg ccggaattat gcaagccttt
    11281 tctgcctttt tccttaaata tcacatggat tggatgatgc ctgtggtagc tgtgatgttg
    11341 gttctcggag ggcttggtgg tgtgagtaat tggattattg cccctaccaa aggtttatta
    11401 gttgccgcag aagaagggaa tttaccagag gtatttcaac ggactaatgg aaaaggtgct
    11461 ccggccatga tgctatacac ccaggcaacc atagtcacag tattatcggc gctattctta
    11521 tttatgccca gtgtcaatgg atcctattgg ctcttaacag cattggcggc tcaattatac
    11581 atgctgatgt atttgatcat gtttgtcgca gcaattaaat tgcgcataag ccaaccttac
    11641 catcccagac cttttaaaat tccaggaggt atggcaggaa tgttgtttgt tgcaggcata
    11701 ggcatcattg gagtggttac cactttagcg gttagcttta ttcctccaga ggggattaat
    11761 gtcggcagtg caacacgcta tgaattgacc ttgattattg gcttgctgct catgtgtgct
    11821 cctcctttta tagccagttg gttgcaagcc aaagaggcgg atttggaacc tgctgtataa
    11881 tttaacaaga caggttaagt ttaataaccc cagttgttta tgtaactttc aaaagatggg
    11941 ctatattgac gaattgttgg aagaactatc tgcacgattg ccagagctgg aatggaagat
    12001 caatggattg agttcttcta tttcaattca taatttgccc aaaggcatat tttcttccgt
    12061 tatagaattt aatggacctg cctgtatcaa ggaaatccag gatgatattc acgctttaca
    12121 gaaacataag gatgagtcaa ttgcatgttt tttggcagag cgtattcaga aaaaaattaa
    12181 tgtcctggtc gtattatgcc aaatggacaa aaagaataat aaacctgaat caaaaatttc
    12241 ttttgatttg acaactctta gtacaagaca acaatggatt aaaaccatgg aagagaagat
    12301 ctgtgccctg gaggaacaat atcaagccat gagaaaaact ttagagcaaa tgaagtcctg
    12361 ctctaatcct gcaactattt tgcatttaca aaccgaatta gggaatgttg aaaaaagact
    12421 tactctggct aaggaaacgc tcaatcgagc aatatcctga aatcgctact tcttaaatta
    12481 acgttatcga tagggattgt ataagaatca ggcgatatcc tcagcatgga tgattcaaga
    12541 taacgacctg tcttatacat tactcacgtt aaattaggga atatatcttt tgcatcccaa
    12601 tattatgctg taaattagag acgcttgaaa aaatataata aggaaaggag tagagcctca
    12661 tgtcagacaa attttcacac attacaaaag atatcactac gcaattagcc aagtttcgca
    12721 aagagatgcc agagttaatg actggatttt cttctttggc acaagctgcg acgaaagatg
    12781 gtgcactgga taaaaaaacc aaggaattaa tcgctatggc gttggccgtg gctaagcaat
    12841 gccccggatg catagggttt cattcacaaa ctttagtgaa actgcaagcg acaagagagg
    12901 agttactgga aacattgggt atggcggttt atatgggagg cggcccttct ctaatgtatg
    12961 ctgcagaagc attggaagct tttgaggaat ttagcaagta attatcaaga cgctaaagtt
    13021 gcgcttaata aatactaaaa tcaataaaaa acgagcaagg cagagttttt gcaagcattg
    13081 acaagggaat tcacagtgct tgacgctctg cccactttgc tttgccatgc tcaccctaac
    13141 aattttcaga acatgtcgtc tggcttaaag aaacggatgt agaaaaaatt ccgggacttt
    13201 gttgctgtgg gggctattgc ggcgataaca gggaagccac atgttgaatt tgtttctcct
    13261 gaggactggg ttcacaaggg tattttttgc taagccctaa taatgccact tgagaaacgg
    13321 tcattttatc tttgtcgctt tgttgactgg atatttcttt ataggtttgt tgaatgagct
    13381 cgttcattac aaaagaatta agttgcacac cttgtggtaa gcaaaagata ggtttccctt
    13441 gtgttttcgc agcttcattc gcctggatta aagtttcagc aatactttca ctggtgatgg
    13501 taagtacatg acgcgccgat ctggcccatg cttgagcttg agggtctgct ttcatttcca
    13561 tttgcggaat attgttagca atattcatat aattatttat tgtatcggcc tgtaaatatc
    13621 cgctggcaag aattaaactg ataaacaaaa gacgcatttt aaatcctcaa gatccttaat
    13681 tattatttag taaataatat ttgctcgggt tatctggaca ttcgtgcggt ccacattcca
    13741 agaatgtact gattccattg gcaagaatca agataaaaaa tacccatatc attacttttg
    13801 ccgacttgct tcgtacttta taatcgggca tgaagccctt atcaaggatt agagccccag
    13861 caattaataa gataatgact aaaaatatga ttgctgacca agtataaaga tgcaaaccaa
    13921 aaatgaggcc gccataacca ggatcacctg gtgttaaatg aatatacatt tgccgaactg
    13981 agatagacag ccctaaaaga gttgccaaaa gcatcagccc gtaatgtgaa gctctaatac
    14041 ccagcattaa attcataaca aaacagagac ctactgcaat aaagcaaatt ctttgcaaaa
    14101 tgcatattgg gcagggtagt tcataaaaga tgaattgatc caggaaggcc aagatcaaaa
    14161 ggcaacaaat tatcaataac cccgaagtat tgccgaaaag atgccattgc atttgtttat
    14221 tcataggttc accagatggc tgtgataatt gaagctgatt agtataagaa gcaaactgaa
    14281 aagaaattgg agtattatcg ttttattggg tttaaatata atttgtaatc ctattatgaa
    14341 ataaaataaa aacagaacta tcatcatgat gatcaccatc ccttttgagg gctacaacaa
    14401 aagtatagat agtatattga gcaatttcga aattttattg taagagagta gcccctcctg
    14461 cctggaacgg tggtattggt ttacggtcaa ttgatgctcg ctgggagatt ttttctcgtt
    14521 gtttgtcgtc tcgtggatta gggggaattt cctgtaggtg gctgaaatga ctatttaaaa
    14581 atatctcatt atctcagcca ttaccctatc tcttgaggtg aatttattaa aagccaaaag
    14641 ctaaattcca tgtggctgaa tcaatcccaa tttgaaggca ataaataaaa acacaaataa
    14701 agataatgaa attgcaatgc gcacggtgag cgctttgact gtgcgctttg atttatcagt
    14761 gtccttgacc aggtaaaaga gcccgctcgc taatgaggcc acaataagaa tcatgacaaa
    14821 gatgatgaag attttagtga acatttgtta tactcctgac attgctagct tcaggggaat
    14881 gttagctaac caaatgagta gttgataaaa gatgcctagt ttaacctgtt ttaattttcg
    14941 tttcacctca aattggccaa tgcttattct tacggccgtt tgcttttttt tattcattag
    15001 ccttggattt tggcaaatac acagagccga tgaaaaaact gcaatgataa ctgcacaaca
    15061 agcgctggca aagcaggagc ccataatttg gcagccaggg caaaaattgc cagagcaata
    15121 tcaacgaatc agcattgaag gagcttttct gccaaagtta tttttgcttg acaatcaaca
    15181 ttaccaacat caatttggtt atgacgttgt ttctcctatg cttcttgatg atgactccat
    15241 cgttatggtg gatagaggtt gggtttctgg agacattact cgacgcactt ttcctaatgt
    15301 tcagactccc aacggcaaat ttaaactatt tggcatggtt tattttccaa gtaaaaaaca
    15361 atgggtatta gggccaagtt ttgaagaaaa agagaataag gtgactcttc ttgaactcat
    15421 tgatgaagaa atactgaaac aacttttgca aaaaaaggtc tatccgttta ttattcgcct
    15481 cgacaagaat gagctttttg gttttgtacg tgaatgggag atagtatcca tgcccccgca
    15541 aaggcacttt gcttatgcaa tacagtggtt tgccatggca ttggttattc tgattatatt
    15601 cgtgattttt aatttgaaga aaaatgaaaa aaccatataa atacatgaca ttattactct
    15661 tggtagtgat ttttgctgca ccaggaataa ccgcttattt gttctataaa catccttcct
    15721 ggcttggaac ctctaaagta aataaaggaa ttttactttc tccaccgatc gctctcaaac
    15781 cgttagatag cagtgcaaaa tggcgcatta tctattggaa tcctaatggt tgtgacaaga
    15841 cttgtcttaa gcagcttaat atgttgggaa gagtccgcct ttcttttggg agaaaattat
    15901 atcaggtgga tgaatggttg cttctaagca acaaagattc attgatcgca gaggaattaa
    15961 aacccatttt aaaagagcaa gatatccatg ttgctgcctt atcattaact gaaatgtcta
    16021 aattgtcgac tttatatcct gaagctaaaa tttttatagc aaacccggat aattacctca
    16081 tactgagcta tcaaccagga tgtaacccag gtgatatata taaagatttg aaacttttac
    16141 tcaatacaac tgaaattaag agcggataaa ttgatgtcta atagttcaat acgattagca
    16201 gcgactctcg ctgttttttt ggcttttttt gtcgttatgt taggagctta tactcgttta
    16261 actgatgcgg gcttaggctg cccggattgg ccaggttgtt atggccgcat ggttcttcca
    16321 ggagcagata aaggtttgca agaagctcaa tcacaatatc cggaccttcc tattgaatcc
    16381 aagaaagcct ggaccgaaat ggctcatcgc tatgcggcag gaacgttagc cctgttgatt
    16441 tttttcattg ctttccaggt atggttcaag cgttgtcagg atcaagattt gccttggcat
    16501 cttcccttgg ctttatttat gctggtggta tttcaggcgg cattgggaat gtggactgtt
    16561 actttaaaat tactgcctgt agttgtcatg ggacatttgc tgggaggtat gttaatcgta
    16621 gcctgtttat gccgttttcg tttgcagata gcccagctaa agggtcaaaa tttacctgaa
    16681 tggcgacctt ggttgcgttt gggaattgtt atcattttat tgcaaattgc tttgggtggt
    16741 tgggtaagtg ccaattatgc aggtatttcg tgtattggtt ttccattatg taacggagtc
    16801 tggtttcctg aattgcattt tacaaaagga tttaatttat tttctacgat aggcgccaat
    16861 taccaaggcg gtgttcttga gagtgaagtt agggccagca ttcaatttat tcatagaata
    16921 ggggctatat tgactgccac ttatctactg gctctgtcat taataatcgt attcaaaacg
    16981 cattcaattt atttaagagc aactgctatt atcatggcta tgttagtatt gcttcaattc
    17041 actttaggga taatgaatgt gattcatctg ttaccactca aggttgcggt cgctcataat
    17101 ggtgtagccg cattattatt agcggtggca ttttgttctt tgcattttac acaagatagg
    17161 gaggttagcc atgcgtactg aatacgcagc tcgacttcct gtagattggc gtgattacgt
    17221 ggaattgtgt aagccacgcg tcgtgttgct catgctactc actgtcattg taggaatgta
    17281 tttagcagct cctggctggg taagcttgcg cttaatcgct tttactttac ttggcatagg
    17341 actgtgcgct ggcagcgctg ctgcaatcaa ccatttggta gacaggcata ttgattcgat
    17401 tatggccaga acaaaaaaga gaccggtcgc ttatgggcgc gtgtcagtaa agcaagcctt
    17461 atggttcgcg gtcattatcg ggctaatggg attaagtctt cttatcctgt ttgtgaacca
    17521 attaacagca ttacttacct ttgtaacact cattggttat gctggtgttt acacagggta
    17581 tttaaaacga gctacttcgc agaatattgt tatcgggggc ctagccggag ctgcgcctcc
    17641 cttattgggg tggactgcgg ttactgacca attggatcct caggccttgt tattagtatt
    17701 gattatattc acatggacac ctcctcattt ttgggctttg gcaatttatc gatataaaga
    17761 atatcaagat gctgaaattc ctatgttacc tgtgacacac ggtattcaat tcactaaatt
    17821 aaatatttat ctctatacgg ttttattgct ggtagtcagt cttttgcctt ttgttgtaag
    17881 tatgagcggc tggatttatt tgctaggtgc tttggttttg ggcatcaggt ttttggtttg
    17941 ggcacataaa ttgtatttta ctgataaacc agtcgttgct atgcaaacat tccgattttc
    18001 tattctgtac ctaatgctgt tgtttgtctt tttattagta gatcactatt tttaaggggt
    18061 tagaatgaac ataaagataa aagggggcgc tgtaacaatc actgtattgg ccttggtcag
    18121 tttattggct ggtatttata tctctcagaa ttttcatttt aaaaagaaga tcaatgtggc
    18181 ggattttcac gggacttatc ttgaaaatcc aagaacagtc aataatttta gcttaacagg
    18241 cacagatcag aaagtttttg ataactcaag tctgcaaggt cgatggactt tagtattttt
    18301 tggatttacc aattgtggtt atctatgccc gactaccatg gcagaacttg gaaaaatgta
    18361 tcgaattctg gaaaagaaag gggtgaaaaa tttacctcaa gttgtgatga tatctattga
    18421 tccccaaaga gacagtcttg ataaattggg tagttatgtc acttctttcc ataaatcatt
    18481 ttatggtgca agaggagaag aggattcaat taaatcaatg acccatgaaa tgggcattgc
    18541 ttacgcaaaa ataaacagta aagagagttc ggagcctgaa aattatgata tacaacatag
    18601 tggggccgta atgctattta atcctcaagg tgagttaaat gcatttttta caacaccaca
    18661 tcatgcggat ctcttagcta aggattatgt cttattggta tcttaacctg taattcgata
    18721 ttttacctct acaggagcaa tagctaagca gacttgtttt atttatgtca aagaaatcta
    18781 tctaggatgc attagttaat taattgactg ttgcatgaat tcaaaaatta ctctcctgtt
    18841 gggtatggca gggaggataa tttgtgattt ttaatctagg ctttaagtaa ggattgttga
    18901 catttcattt atcttggctt aaaacccgcg attttctatc gctcggctgc ttttgtcatt
    18961 tcagagcagc tctgttgtga tgcttaaaac ttgcgttatt taatagaaaa ttagggaaaa
    19021 tggtttggat tgttcagatt gaagtatgaa attactgagg aaagtttaat tcatgaaaat
    19081 tgcgatattg gcaactaacc cccatttgta ttctcataag cgtttaaagg cggaggctga
    19141 ggctgcgggg catgaggtta aaattattaa ccctttatat tgttatatga acgtggctgc
    19201 ttctaatcct aaggtacatt atcgaggtgg ggcaccttta ccgcattttg atgccgttat
    19261 tcctagaatt ggcgcatcca ttacctatta tggtacggca gtattgcgtc atatggaaac
    19321 aatgggcatg tacactctta atgaatctat agctatatca cgatccaggg ataaatttcg
    19381 ctctttgcaa ttgctggcac gtaaaggaat tcctatgccg ttaaccagtt ttgcccagtc
    19441 tcctgatgat actgaagatt tgattcatat ggttggtggg gctcctctgg tcataaaatt
    19501 attagaagga acacaaggca aaggagtcat tcttgctgac agtcatcaat cagctgtgag
    19561 tattatcaat gcttttaaag aaatgcatgc caatattttg gtccaggaat tcattgaaga
    19621 atcccgaggt acggatatac gttgttttgt cataggagaa aaagtagttg ccgcagttaa
    19681 acggcaggcc aaggatgggg agtttcgcgc aaatgttcat caaggaggaa aagcagtaaa
    19741 agtcaaactt tccccgcaag aacgggcaat tgctgttagt gccgcaaaaa caatgggatt
    19801 aagagttgcc ggagtggatc tgattcgctc aaatcatggc ccattagtgc tagaaattaa
    19861 ctcttctcca ggtcttgaag gtatagaaaa agcaactaat attaatttgg caggaaaaat
    19921 cattgaatac attgagaaaa aagcgaagcc aattagttcc aatcatagat ttcatggata
    19981 atttctaatg ggctcctgat ttggagtcac ttttgccaat tagccaatcc gcattgactt
    20041 ccagttcctg agctaatgtt tttaatacgg cttcatcagg gcttgtaatt ccattaagca
    20101 aagcttctgc tttaaatttt ggaattttga tgagtttgga aagtatctca attcgctctg
    20161 ctgtggcctc agggactcca atattatcca gttctttatt cagtcgttct gaaaatctct
    20221 tgttaagcat gagtggctcc taatcaaagg gattttttac taacgtgtac ttatttcata
    20281 tagcataaaa atgaagtttt gcaattttta gacaaaaatc gctaattttg ataatgttgc
    20341 agttcataaa gcggatttcc aagtgctttt tttaatcctt ttttatcctc taccgctttt
    20401 aattcacttc aattgatttg aatgattaaa caggtgatgt acctgataga atgagcgaaa
    20461 aaaatcaatt ttgattgacg cttgattcca gtgatgtaaa atcgatgcaa tttcagggac
    20521 atagttattg taattttggg atgatatatg ctcttaaaag cagaatcgaa gtatccttgt
    20581 gatttaattt tgtttggtac gctgggtgac ttgtcttgtc gaaaattgtt gcccgcatta
    20641 tatcaactag aactggctaa tttacttcac gaaaaaacaa gaattattgg gtgtgcccga
    20701 gaagagcttg atttttctgc ttatgttgac ttgattaaaa ataaaattca gcaattttta
    20761 tttgatgaaa ttgatgaagc agtctggtta cgttttataa agaaactggc ttattgcaag
    20821 cttgatctga atcaatcaga tgattatcaa aaattaacgg actatgttaa cccttctgag
    20881 cgagtggtta tttcttactt ggcaattcct ccaagccttt attctcaaac ttgccgcagt
    20941 cttgctcgcc ttaatctaac acagaaacca tcgcgagttg ttttggaaaa acctattggc
    21001 catgatttgc cttcttctgt agcaaccaac gaacaagtgg cttgtttttt tgctgaagat
    21061 cagatttatc gaattgatca ttacctgggt aaagaaaccg tcttgaattt attagtgctt
    21121 cgctttgcta attccatatt ttcaaccaat tgggataatc gcgttattga tcgagttgaa
    21181 atttctgttg ccgaagaaat cggtgttgaa ggccgttggg aatattatga taagtcgggc
    21241 caagtcaggg acatgctgca aaatcatttg ttacaaatat tatctttagt tgcgatggaa
    21301 ccccccttaa gcctttcagc agaaagcatc agaagcgaaa aattaaaagt actgaaatct
    21361 ttgcgtttta ttaacaagtc caatgttcat gatcatacag tacgagccca atatgtggcc
    21421 aatactttag caaatggtaa aaaaatacct ggttatttgg aagaggtggg tgctaatcag
    21481 gcatctacaa cagaaacttt tgttgctatc aaagcctatg ttgacaattg gcgatggtct
    21541 ggtgttccat tctatatgct tactggcaaa agattaccca aaaagcaaag cgaagtggtt
    21601 atttatttta aaccacagcc ttataatatc tttcatccct taaatgaaga attgtaccct
    21661 aatcagttaa ttattcgctt acaacccgat gaaggggtgg aggtgaggat aatgaataaa
    21721 attccgggtc ttggtgagcg tatgatgttg catgattcca agttggattt aaatttccat
    21781 catagtttta aaacgcaaag gattgctgat gcctatgaga gattattgct agaggtcatg
    21841 ttaggtaatc agtatctttt tgtaagccga gaagaaattg aacaggcttg gcaatggatt
    21901 gacagtattg tatcggcatg ggaagaagat aatattccgc tgtataccta tccagcttgt
    21961 acatgggggc caaaggaagt catacgctta tttaatgggc aagcacatgt ttggggtgat
    22021 cacaatgcag tttcataatt ttagggatgc caaacagttg attcatgaca tggtggaaaa
    22081 attaagaact attctatcag atgcaatcaa acgaagaggg caagcctttt tggtggtttc
    22141 tggcggtaga acccctatcg atttgttcaa ggaattggct ttagccgact tgccttggga
    22201 aaaagtagtg atcactttga ccgatgaacg ttgtgtcaac ctttttgatc cacatcgtaa
    22261 cgagctgctg gtacgtgaat ttttactgca agagaaggca aaaaaagcca aatttatcag
    22321 cttgtttgat gaaaaagagg atccattagg tcatttgaat gaggtgaata gccaaattga
    22381 ttctctacca atgtttgatg cagtagtttt aggaatgggg gaagacggcc atactgcttc
    22441 tttatttcca tgcagtgatg agttaagtgc aggattagat gataaagcaa atgcggtgct
    22501 tattgtgaag cctagaacag cttcattcca gagggttagc ttatcgaaaa ggcgattatt
    22561 aaacagcagt actatttttt tacatttagt aggtcaaaga aaacgggttg ttctggagca
    22621 ggcaatggca actaacaacc cggagatcct gccaatctgc gctattttaa atgccccaga
    22681 tgccaatgtt caggtgatgt atgctccaag cgatgaggaa aaagaatgca tcctgtaata
    22741 aatcaagtga cagaaaatat ccaaaatcgt agcgctgcta gaagagcggc ttatctgaat
    22801 caaatcgata aggctcgtac taaaggccca caacgaagta ttctgcattg tgggaatttg
    22861 gcacatggct tcgctgcttg tgccaaacag gacaaggcta ttttgagagg taatgcaaaa
    22921 gccaatattg ccattgtttc tgcttataac gatatgttat cggcgcatca accgtatgct
    22981 gttttccctg atttgattaa ggaagcgatc tctgctgcag gaggagttgc gcaatttgcc
    23041 gggggcgtcc cagccatgtg cgatgggatt actcagggac aaccggggat ggaattaagt
    23101 ttactcagcc gggatgtgat cgctttatcg actgctgttg ctttgtcaca taacatgttt
    23161 gatggagggc tcctcttagg tatttgcgat aaaatagtcc ctggattatt aatggctgcg
    23221 ctggcatttg gccatctgcc ttttattttt gtacccgcgg ggcccatgcc ttctggtatc
    23281 tccaatcagg aaaaagcaag aattcgtcaa ttgtacgcag caggtcaagt cgacaaaaat
    23341 gccttattgg atgtggaagc agcctcctat catacggctg gaacatgcac attttatggt
    23401 acggccaatt caaatcaatt agttattgaa ctgatggggt tgcagctccc aggctcttcc
    23461 ttcgtgaatc ctaatacccc gttgcgcaat gaattaacca aagcagcagc atatcagatt
    23521 ttgtcattaa cagatttaaa ttctgattat atgccaatag ggcagatgct tgatgtgaaa
    23581 aatattgtaa acggtattat cggattattg gcttcagggg gatcgaccaa tcataccatg
    23641 caccttgtcg cgatagcggc tatggcaggg tattgggtaa attgggatga ttttgcacaa
    23701 ttgtcggcaa ttattccatt aattgctcga atttatccta atggtcaagc agacatcaat
    23761 cattttcaaa gagctggagg catggcttat tttgttaaaa ccttgctaga ggctgattta
    23821 cttcatcctg atgtcaacac agtcgtgggt tttggactgg ataaatatac gcagcagccg
    23881 caattgattg acaatcgagt ggtttgggtt aatggtcctg acagctcaag caataatgaa
    23941 gtattaacct ctgctaccga tccatttaaa cctcagggtg gtttgcaggt tttaagtggc
    24001 aatcttggca gagcaattat taagacatcc agtctttatg atgagcatta tgtgatagaa
    24061 gctcccgcag tcgtttgctc aagccaagag gaatttgaac atctattcaa tcaaggtttg
    24121 cttaataaaa attgtgtggt ggtagttcgt tttcaaggcc caaaagcatg tggaatgcca
    24181 gaattacatc aattaacgcc aaaacttggt gtgctaatgg ataaagggtt tcatgtggca
    24241 ttggttactg atggtcgaat gtctggcgca tcgggcaagg ttcccgctgc aattcacgtt
    24301 accccggaag cggttgatgg gggcgggatt gctaaaattg aaacgggcga tatgattttg
    24361 atcgattgtg aaagaggaat acttcaatta ttagtttctg atgaagagtt agcaggccgt
    24421 tctccagtag ctatcgaagg gtattcctct gttctaggca tgggacgaga gttgtttggt
    24481 aatttaagat tacattttac tggtgcagaa cagggggcat gtagtctatt taaaggaaat
    24541 gaattttttt atgatgcctc atgatttagc gcagtatgcg attgttgcgg acataggcgg
    24601 tacttttgct cgtttcagta gagttaatct tgtcaatttg cagatggata aaattgaaat
    24661 ttctccttgt gccgagttta ttagtcttga gtccgcgcta ttaacttata aaaaccggca
    24721 ttctttgcaa gaaataaaac atattgcgat agcgattgcg tgtccagtca tcgatgattt
    24781 ggtttctatg acgaattgtc attggcaatt ttcaataaca gagttaaaac agagacttgg
    24841 tcttgaagtt ctggaagtca tgaatgattt tactgcgatt gcgatgagtt tacctgtatt
    24901 atcgactcag gatctggtgc agattggtaa tggttacctg gatgccagta aagtgagagt
    24961 ggtgttaggc gcaggaaccg gtttgggtgt tgcttattta attcctcatc aacatcacta
    25021 tagtgctttt gcaggggaag gggggcatgc tgattgggga gcaaaaactg agcaggagtg
    25081 gtttatctat cgttatttga aaagtaaata ctcccatgta tcttatgagc gattgctgtc
    25141 tggacaagga ctggaaaatt tatatcaagc tttagccgcg tatcatagta aaaaagttga
    25201 atttttgtca gcagcacaaa ttatatcttt ggcattaaat caggaatgtt tcatagctca
    25261 taaggcagta gcccaatttt tttcaagttt gggatcgttt gctggtgatt tagcattaac
    25321 ttatggagct tttggtggtg tttatattgc aggagggatt atgccgcgtt tactctcttt
    25381 ggtacaccaa agcgacttta gaatccaatt tgaagacaaa ggacgattta gtgattttaa
    25441 tgccttaatt cctacttatg tcattgcagc cgctcaacca ggtattttag gcgcgagcgt
    25501 cagtttaaaa caaatattga caggagcttc tcatgtcctt ttctgaatgg aaaacacaac
    25561 caggcgcggt atttgctgca tctccggtta ttccagtcat tgtaatcaaa gagttagagg
    25621 atgcgttacc tttggccgag gctttatttg ccggaggaat tcatgttctt gaagtgacat
    25681 taagaacacc agtggcaata aaagcactgg aattattgat caatacgttt ccagatgaat
    25741 taatcggtgc cggaactgtg attacccctg gccagtttca tgatgtggta gcagcaggag
    25801 ctcgatttgc cattagccct ggccaaacaa gggaattatt aatagcagga cagaaaagtg
    25861 aaattcctct cattccaggt gtagcaagtg tctctgaatt aatggaaggt ttggggatgg
    25921 gatataacca ttttaaattt tttcctgcgg cagcggctgg aggtatccct atgttgaaag
    25981 cgatatcggg cgtattcccc caagttaaat tttgtccaac aggcggaatt aattccaaaa
    26041 attatgagga gtatctttgc ttgccaaatg tagcttgcgt tggagggtcc tggattgtac
    26101 cggaagaggc tatcaagaat cataactggt ctttaattac agagttatgt atggcggtga
    26161 gttctcagaa gcgagaactt tgctcgcaga attaatctat tcgggttgaa aaagcgtttt
    26221 tatgtgatgt aagggatagt gccagctaaa acagttcatt gtgtagagta gagacagagg
    26281 aaaagaattt aaatcaagga gtgaaaaatg gcttggattg tcgcaataat tgggtcaatt
    26341 gccggttttt tatttggtta cgatgaggga ataatagcag gttctcttgg actggtaaaa
    26401 aatcatttta atctgaatgc aacccacatt ggcgttatgg cttctgcttt accttttggg
    26461 gcattgtttg gttcgctgtt gattggtgca ttcatggcat caaagtgcgt aaaacgtttc
    26521 ggcagacgtt ctttattatc ctttgccggt tttttgttct ttgttggagc cctgggtgcc
    26581 ggttttgctg aaaccgtttc agtgttgatt ttatctcggt taattttagg tttggccatt
    26641 ggaatggctt cagttttaac tccattatac ctggctgaaa cagcagccgt gcaatcacgt
    26701 ggcgcagtgg ttgcaattta tcaacttgca ttgactgtgg gtattgtttg ttcttattcg
    26761 gtcaattatt tattgataga gcagcaagcg tggcgtgcaa tgtttgcttc aagtgctatc
    26821 cctgccttgt tattgaccct ggggattttg tttatgccag agtctcccag gtggttatgc
    26881 agcgttggac gtcatggtgc agcagcaaac tccttaagaa aattgagagg caaacaatca
    26941 gttgagcaag agttaaaaga tattgaagcc acactggcga acgaaccaaa acaaggcaac
    27001 tggctacttc tattccaaaa gcccttgttg cctgtgttga tgttaggaac aatattattt
    27061 tgtttacaac aattaagcgg tatcaatgtg gtaatttatt ttgcaccaga aatattcaag
    27121 aatttaggct tgggcagcac gactggacaa atattagcga caatggggat tgggttagtt
    27181 aatttactgg ttactattat tgccattttg tatgtcgata agctagggcg acgcaaatta
    27241 ctgttactgg gttttgcagg aaccagtttg agcttgtttg cattatcgct attttcatta
    27301 aatcatgttg cctggctatc ttatttatcc gttatttgct taatggttta tattttttct
    27361 tttgcaatca gcgtgggccc tatcccccac attgctatgg cagaaatttt tcctcttcat
    27421 gtccgtggtg ccggtatggg gatgtcatcc atgagtaatt ggttgtttaa tacgatagtt
    27481 atttttagtt ttcctgttct gcatcaaatg tttggtatag aaatgacttt cgttctgtac
    27541 gcggtaatct gtttcttggg gttcatttat gcttatattt atatgcctga aaccaggaat
    27601 attagtttag agcaaataga aacttatata atgagtggca agccattacg gtttttaggt
    27661 agagaggatg aagaggttaa tgctgtgtca actaaatcag aatcttcttt gctggcttca
    27721 acaaattgat ataaattttc ctctgatgcc cgtgttatct ttgactgaca cgggccacaa
    27781 attctattct ttatcgcatt accctatcgt ataaaatcct aataggtatt ccagcccgta
    27841 gtttttattc tattttccaa ttgttctctt aaatgaatag ctcgcaagac ggaaacgtaa
    27901 ctccaggtca aggatgtcgc tccttgctga actccggtat tcaaattaat ttgttcactt
    27961 aaattcagat cagggccata ttgttttatc agccttaggt aattgtcccc tttctttaga
    28021 tagttctgta tatgaagttt attaatgctg ttcggggaca gattatgagc catggtaaaa
    28081 taatattcag ccatcgtagc ggttaagata aaccaggggt tccctatgct gtttgtttgg
    28141 tagccatcat aagtatcgcc gggataacga ccaaacaata ttgctccaga acggttttta
    28201 ttaataggaa acatcaaatt aaattgctca tgcaaagcct ttgcagtatt ttgcacaaag
    28261 gtgtgatgtg gggcaaaaac accttctttt tgtgggttaa ttaaaatacc caacatgacg
    28321 gacgaatcaa gctctagtgt tttttgagga ccggggtgag gtaataatgt ggcttgaatt
    28381 attttattct gatggtccaa atgctgtttc agtcgactgt taattaagtt ggcttgcatt
    28441 tcataaaaaa cagcagcttg tctgtcatga agttggtgag ctaaaatggc gccatcggtc
    28501 agcgcttttt gttgtgccat agccgtgaaa aaatgatggc cataaacctc ttcccacagg
    28561 tcaaaatttg catcttgcca atgatgtgcg atgtattcca aatccatctt gatagtgccc
    28621 atggattgtg ggtccatggt gttgttataa agatgtgatt taacataatc tatttcatta
    28681 tgatcgagaa gctgttgcgc aaaacgaatt aaaacagatg ctctgagtgc cggaccatca
    28741 ttttgtggcc gtccccattc cccatcaaaa ggattgccat tgatataaaa tttgggttca
    28801 cccaatatat cctggccagc aatgggatcc gcttgatgct gtattttttc tgtccatgaa
    28861 acgtattcta ataaaagttt tttatatcga gcagattggc tggcttcata ccatgtttca
    28921 accaatccca tggcaatggc tgagtctcga atccagtcat aataataatt ggggttgtat
    28981 tgcgagggtg aggctacgat ggctccattg gtttgaaagt tatttaaaaa atgttttttt
    29041 aatatttgaa cctcttcatg ggtaaatact gaagccatag tttgagagac aaaaaaaatc
    29101 attaagaaaa agatcctttt caacataatc tcctgatagt agttagtttt aaaaaagaag
    29161 gtcgccatag tacaggaaat gagtttttca gaccatagtc tttagggcgg gttattgtaa
    29221 aatgtgttta acatcaatta ctttttgcct tgaccctggt tttttgcaag tccttactca
    29281 aagctttctc agattaagcc ctgtctttga taaggtgatt gtcttcaatg gattgatact
    29341 caagaagatc tccgggttga caatgcaagt aagcacaaat agcttcaagg gttgcaaaac
    29401 gtattgcttt ggctttacca ttttttaaaa tggataagtt agcttcagta atgcctatag
    29461 cttcagctaa atctctaagt cgacactttc tttttgccat catcacgtcc aaattaacaa
    29521 taattgacat cgattgaaac tccttaaaca agcgggatat aaactgattg agactgcgta
    29581 agaaaatctc ttgatgtcct tacgctgaag ttcacattaa atggttaaca aggcatccgt
    29641 ttttaattta tgtgcttcct taataatcca agaggcaatc aaaatgataa aagcggtaat
    29701 taacgtggac aggttcgctg ttcccaaggt gatgcttgcg atacgttgac cagatggatt
    29761 ggtaaaagtc agagctgcgg ttatcaaagg ttgataaagc aattgtataa gttcacctga
    29821 gatcaggtaa atactgatat tcttaatcag tcgaatgttt tcttcttcaa ataaatagcc
    29881 atgttcatac aagcgaaaca gctttgccaa ttgatgacaa attagaacat taatggataa
    29941 gggtaatgct tcaatcaata aaataatgaa acgatgcaac aaggaaaaat gagaagggtc
    30001 tttcactggg gttgataaca gggagtgcca tcctccccaa ttcagcatgc tctcgaaatg
    30061 aaatagaatg aaataagtcg ttacaagggg aaggccatat gctaatgttt tgaataatag
    30121 aaaaagcaaa tgactcacag attttatttt tttcatta
//
LOCUS       DACVWI010000016        29532 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.016, whole genome shotgun sequence.
ACCESSION   DACVWI010000016 DACVWI010000000
VERSION     DACVWI010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 29532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29532
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.016"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            116..535
                     /locus_tag="JBH85_02635"
     CDS             116..535
                     /locus_tag="JBH85_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019215770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HAU0945085.1"
                     /translation="MNNYRQQHGLAPLKMDNRIVKEAKIHSMDMAKHAIPFGHKYFKK
                     RIDKLHTQIKNSNAGAENVAYNYKNAQDVVKNWLRSPGHKRNIVGNYDLTGIGIARDD
                     KGKIYFTQIFLKTGNSHFASRKPFPSIFSGALFSKKA"
     gene            929..2062
                     /locus_tag="JBH85_02640"
     CDS             929..2062
                     /locus_tag="JBH85_02640"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HAU0945086.1"
                     /translation="MMIATLMESAQETRVAITPNSAKQYIKLGYDVGIEKNAGLSSDF
                     ANEEFEKAGAIIFDSKSTLLKKTQILLCVNEPDPKNLNGLPPDSLIIGHIDNNPLSPL
                     VKWCLDKKMTLFSMNLIPRISRAQSMDSLSSQANLAGYRAVLEAAATFHRAIPMMMTA
                     AGMIQPAKVLILGAGVAGLQAIATAKRLGAVVYAFDVRKAAKEQVESLGAEFIEVMQE
                     QDSETAGGYATETSEEYKELQAELIDQYAKTADIVISTALIPGRQAPVLLYKKTVEQM
                     KPGSVIVDLATSRGGNCELSVADKIIKHGEITIVGLSNMAGLVPATASDLYSNNLVHL
                     INLLAKNPAELNLNPDDEIIQQAVLCHKGTYLPFQGVKEKQNA"
     gene            2055..2351
                     /locus_tag="JBH85_02645"
     CDS             2055..2351
                     /locus_tag="JBH85_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HAU0945087.1"
                     /translation="MPEIHTVDNPYITILTIFVLACFVGYYVVWKVTPALHTPLMSVT
                     NAISSIIILGALIAAGSELIGCITWLGGIAIFITSINIFGGFVVTQRMLRMYKK"
     gene            2375..3772
                     /locus_tag="JBH85_02650"
     CDS             2375..3772
                     /locus_tag="JBH85_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003635813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HAU0945088.1"
                     /translation="MNSIVPLFYLLAAICFILALKGLASPATSRRGNLLGILGMILAV
                     GSTLMMPTTYHHILLIALIAGGGIIGTIIALKINMTAIPQLVAAFHSLVGMAAVLVAY
                     CAFLSPASFQIGTPGAIATASLIEMSLGLIIGAITFSGSVIAFLKLQGLISGIPIRFY
                     AQNYVNLLIGLTILVLLILFVANQNLFLFNLLAGLAFLIGVLLIIPIGGADMPVVISM
                     LNSYSGWAAAGIGFTLSNHLLVITGALVGASGAILSYIMCVGMNRSIFNVIFGGINSS
                     GNTKQAHSANELRNVRQANGEDAAFLLSNAKDVIIVPGYGMAVAHAQHAVKELVDALE
                     SRSIRVRFAIHPVAGRMPGHMNVLLAEANIPYDRVFEQSEINRDFATCDVAYVIGAND
                     ITNPAAKTDPASPIYGMPVLEVEKAKTVLFVKRSLSPGYAGVENDLFFHDNTYMLFGD
                     AKVMTESIAKALGEI"
     gene            3865..4290
                     /locus_tag="JBH85_02655"
     CDS             3865..4290
                     /locus_tag="JBH85_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945089.1"
                     /translation="MYLSQLIFHNGDISMLRKIGFTLLCAVATFSSSTYSSVTHTLQA
                     GVTLEYEFPPNEPLVFVNYLYWEVAADCKITSEDPSNELFAEALAKAGKINGVTLSKG
                     NTMKVTVHSGDILKLSAESGAKVQITNFGPHTLKATCTA"
     gene            complement(4356..5936)
                     /locus_tag="JBH85_02660"
     CDS             complement(4356..5936)
                     /locus_tag="JBH85_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HAU0945090.1"
                     /translation="MSDFYQDFKKRRTFAIISHPDAGKTTVTEKLLLFGGAIQLAGTV
                     KGRKADRHATSDWMEMEKERGISITTSVMQFIHNQHVINLLDTPGHEDFSEDTYRTLT
                     AVDSALMVIDVAKGVEERTVKLMEVCRLRDTPIMTFINKLDREGREPIDLLDEVESVL
                     GIQCAPITWPVGMGKRFKGIYHRYQDIIYLYQQGSNAKKVEAMQIKGLDNPQLDELIG
                     DSADELREEIELVRGASHEFNLEDYLAGKMTPVYFGSAINNFGIKELLDDFVEYAPGP
                     QPRATQERVVSPNEETFSGFVFKIQANMDPKHRDRIAFVRVCSGSYKKGMKLSHLRIG
                     KEVQISNALTFMAGDRSHTELALAGDIIGLHNHGTIRIGDTFTQGEQLKFTGIPNFAP
                     ELFRLVRLRDPLKSKALLKGLIELSEEGATQVFRPLNSNQLILGAVGILQFDVVAHRL
                     KHEYKVDCIYESVNVSCARWVYSEDDKAMSEFRTKAYDYLALDGGDMLMYLAPTKVNL
                     TMAEERYPKIKFCATREH"
     gene            6160..7026
                     /locus_tag="JBH85_02665"
     CDS             6160..7026
                     /locus_tag="JBH85_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945091.1"
                     /translation="MRFNHFIAPLVLLPVCALSQPQNDKGDVFLSKIPISKNAFVKSY
                     SSESAEFKLLESNARSIDYPTQIIRISGSLESQQLDCDQVHAEILEKVVAPFAPDKFT
                     YNTYISCSYNPDTNMATGFLINSYLDPLTDDAVELLETYLAKNNGSNLLGTPLTFEPA
                     KALVVALTISAGMKKNPNKPPFVEYKQDRSNFYFKSNYEMRNKLFTDIYQNFFTNDPN
                     KILPFLDKWIFVNASSVYEAILMDSNFVELQPERIFLMENGEQIFVSNLKYYFTHNCN
                     RYSNHRCLQPQA"
     gene            complement(7193..8251)
                     /locus_tag="JBH85_02670"
     CDS             complement(7193..8251)
                     /locus_tag="JBH85_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HAU0945092.1"
                     /translation="MTEEVLFSQEGQLGFITLNRPKALNALTLTMIMALQKQLSIWKE
                     DYSIKAVVVQAVPGNAFCAGGDIRWLYNAGRSKDSEQMQFFWHEYRLNHFIHHFGKPY
                     ISLLDGVTMGGGVGISLHGSHPVASERFVFAMPETGIGFFPDIGASYLLNRCPGFLGV
                     YLGLTGNKLGPHDARKAGLVKQIVFAEQMQSMIEALKREDLSEDAFNRVDQCISSFAS
                     NAMPTEASQIKPLIDVCFSKPSVELIRASLQSTDGVWALGVDNTLLQKSPLSLKITLA
                     QIQKAKGLSLAECLKMDFDLASHFMKGSDFYEGVRSLLINKDKNPQWRPSSLELVTDA
                     MVVSYFESSSSGLELMIL"
     gene            complement(8254..9033)
                     /locus_tag="JBH85_02675"
     CDS             complement(8254..9033)
                     /locus_tag="JBH85_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HAU0945093.1"
                     /translation="MMNLIEQDIDNNGILTLTLNRPEKLNALSTDVLNALNELFFQAK
                     SNPKVKALLLTGNGKAFCAGADINRLAECNAQTGYEFACQGQEVFRLLETMGKPSLAA
                     VNGFAFGGGCELAISATLRIASNKAMFGQPEVKLGVIPGYGGTQRLARLIGKGRAMDL
                     CLTGRFINADTALNWGLVHEVVAPEDLLTQGKNILNGILSMAPLAVASVMEVIDHGYD
                     LSLTEALHLEAIHFAKVCATEDKKEGVAAFLNKRTADFKGV"
     gene            complement(9047..10201)
                     /locus_tag="JBH85_02680"
     CDS             complement(9047..10201)
                     /locus_tag="JBH85_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAU0945094.1"
                     /translation="MHFNFTDEHLAFREMASEFARNKLAPMADFWDEQGYFPIEILRE
                     AAQLGMAGMVVREDIGGAQLSRLDAALIFEQLATGCIPTSAYLSIHNMVASLVDRYGS
                     QEIRKKWGPKLTGMEVIASYCLTEPESGSDAASLKTRAVKEGEYYVLNGAKAFISGGS
                     VSDVYLCMVRTGDESHHGISCLLIEKNTPGLTFGKLEKKLGWRNQPTCMLYFENCRVP
                     IANRVGEEGMGFKIALNALNGGRVNIASCSLGGALACLRMSQSYMHERKQFGKPLTQM
                     QALRFYFADMLTDYEAARLMVYRAAAAMDNDDPNAPMYCAMGKRLATDVAFRISDKAM
                     QLHGGYGYLRDYQIERIFRDLRVHQILEGTNEIMREIIAKASLDEEYFIE"
     gene            10315..12141
                     /gene="recQ"
                     /locus_tag="JBH85_02685"
     CDS             10315..12141
                     /gene="recQ"
                     /locus_tag="JBH85_02685"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HAU0945095.1"
                     /translation="MGTLAQPSFINPNALAVLKKYFGFDSFRPPQEKIIEDVISGEDV
                     LVLMPTGGGKSLCYQIPAIVRPGVGIVVSPLIALMEDQVTALKLQGIRAAYYNSSLTA
                     EDARNVLNQLHHNELDLLYIAPERLISTSFLDRLSECTISLFAIDEAHCISQWGHDFR
                     PEYACLGLLKTNFPDIPMIALTATADKQTREDIVTKLNYQPKKYVVSFNRPNIHYKVV
                     PKTNAVKQLNLFLQSDTQQSGIIYCGTRHTVEHLTAKLQELGFKARAYHAGLPHAERR
                     EVQNLFRYDRIDIVVATIAFGMGIDKPNVRFVVHHDLPKSIEGYYQETGRAGRDGLPA
                     KALLLYDAADSARLRSWIMNIPLEEQRHIETNKLNHMLAFAEASHCRRQILLRYFDEP
                     SHTECKNCDVCDNPPQTADATEDAQKFLSCIYRLKQSYGLTHTIDVLRGSLSEKIKQS
                     GHEHLSTFGIGKEKSANYWKHLAWQLIHKDYCLQDMNHFNVLRLTPKAIPLLKGVESI
                     SLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKLRALRRQLADEENKPPFMIFSDATLH
                     EMAQLKPKNSKQLLNVSGVGQHKLARYGHYFLEALNEFSEVE"
     gene            12151..12702
                     /locus_tag="JBH85_02690"
     CDS             12151..12702
                     /locus_tag="JBH85_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HAU0945096.1"
                     /translation="MRKLPRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAY
                     LGQHDLACHSSKGLTKRTKVMFGPAGYAYVYLIYGMYYCMNVVTEKEGIGSAVLIRAL
                     EPIKNIQDRTQGPGLLSKAMRIDSKLNHRDLLSNDFYIAEPNSPTDFTIIEKPRIGVH
                     YAKEWANELLRFYIKDNPYISKT"
     gene            complement(12898..13302)
                     /locus_tag="JBH85_02695"
     CDS             complement(12898..13302)
                     /locus_tag="JBH85_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HAU0945097.1"
                     /translation="MKKLLSASVITLMITGCAAIPADPQSERVIASPNPAPKGCKYVG
                     QVVGNQGNFFTGGFTSNRNLEEGAMNDLKNKASKKGANYIQLVTNRAGVTGSMSGSFD
                     RHGGFMSGGSEQTNVTNLGNAYICPPKAIGLE"
     gene            complement(13358..13561)
                     /locus_tag="JBH85_02700"
     CDS             complement(13358..13561)
                     /locus_tag="JBH85_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin domain-containing protein"
                     /protein_id="HAU0945098.1"
                     /translation="MTDKVYQIVELIGTSQEGIEKAIDNAIKQVAKTHGKLDWFEVVE
                     TRGFIDDNKVKYYQVHLKVGCNV"
     gene            complement(13551..14282)
                     /locus_tag="JBH85_02705"
     CDS             complement(13551..14282)
                     /locus_tag="JBH85_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945099.1"
                     /translation="MALLFFGGHVLSEILMNEWWLVILLVVLAVFACTLITYPLRRNR
                     LVSLLLAPIIFIMVFTGYYFWGDFARWQEYLHRNEAQELAQSMLKSIKSPQELIDKLK
                     AKLDAQPESAKGWYLLGRLYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLS
                     NQQFNPDILEIFHTLLKNNPRQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSE
                     EALAIRKAIAKAEKQINRGGKKSDR"
     gene            complement(14230..14631)
                     /locus_tag="JBH85_02710"
     CDS             complement(14230..14631)
                     /locus_tag="JBH85_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HAU0945100.1"
                     /translation="MRVFHFCFKVILLLLLVSVAFANSMYPLDSARKEAQFNHLLKDL
                     RCLVCQNQDLADSNAQLAKDLRFQVYELVKEGKSDSEIMDYLTARYGDFILFKPPVKS
                     VTLLLWFGPFLFLLIGFIIFWRTCFKRNSHE"
     gene            complement(14631..15164)
                     /locus_tag="JBH85_02715"
     CDS             complement(14631..15164)
                     /locus_tag="JBH85_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HAU0945101.1"
                     /translation="MKKIGWRVIPIAIFCLLCFFLWRGLSLDPHHLPSARIGKPLPDF
                     ALPELQNPDSTFSAMNFHNQVVLLNVWASWCEACVEEQVFMLQLAREGVPIYGLNYKD
                     NPEHARAWLAQWGNPYRLIGQDSEGKVAIDLGVYGAPETFVIDKKGIVRYRHVGIMNQ
                     KTWLTDILPLMRNLEKS"
     gene            complement(15161..17113)
                     /locus_tag="JBH85_02720"
     CDS             complement(15161..17113)
                     /locus_tag="JBH85_02720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HAU0945102.1"
                     /translation="MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVV
                     LQFLFVACAYLCLTACFLMDDFSVNYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAI
                     LSFWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRD
                     LNPLLQDPGFLFHPPMLYMGYVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCC
                     LTAGITLGSWWAYRELGWGGWWFWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWT
                     MLLAIAAFSLSLIGTFLVRSGVLTSVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRA
                     QTLQVNKHPGLLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFN
                     AVFVPLMIPLLLLMGLGVRLKWQNDCWRDVFRKLNRIFLLSLILPVILLFCTSTEIHL
                     TALLGLILAFWVLLSTANAAYHKVRDRGVAGVGQAYWGMVLAHCGVAATVIGIAVSSA
                     YGVQDDVRMSPGKQVNLLDYQIGFINQTPLSGPNYKGTRAEFSIQYQNKTRQIFPEKR
                     VYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAG
                     GVLALTDRRYYRKRQVTVMSGQEIKI"
     gene            complement(17110..17541)
                     /gene="ccmE"
                     /locus_tag="JBH85_02725"
     CDS             complement(17110..17541)
                     /gene="ccmE"
                     /locus_tag="JBH85_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HAU0945103.1"
                     /translation="MTPVRRRKLFILLFALSVLSAAAALVLYALRQNISLFYTPTQIV
                     AGEAPAKHHIRVGGMVEANSIVRAKKGLDVQFKITDFENTIVVTYSGILPDLFREGQG
                     IVAEGEVTDNHHFHATQVLAKHDANYMPPQVKSALADKVKQ"
     gene            complement(17547..17678)
                     /gene="ccmD"
                     /locus_tag="JBH85_02730"
     CDS             complement(17547..17678)
                     /gene="ccmD"
                     /locus_tag="JBH85_02730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HAU0945104.1"
                     /translation="MGGYSFYVWPAYGLVCVVLGMNILGIKWQRTRTRKKLQRWFKR"
     gene            complement(17689..18480)
                     /locus_tag="JBH85_02735"
     CDS             complement(17689..18480)
                     /locus_tag="JBH85_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HAU0945105.1"
                     /translation="MVESFFLILLFPMWKILYQLASPKNFYNYAGRLIPWLAVSALAT
                     IVIGMVWGLVFAPPDYQQGDAYRIIFVHVPSAFLSMALYAWMGFLAILLLVWRIKMAG
                     LLIHKVAQLGACMAFLALITGSIWGKPMWGAWWVWDARLTSELILLLLYLAILATYQA
                     VKNKEDGDKIIAILALVGLIDLPIIHYSVYWWNTLHQGATLSVFSKPKIALSMLYPLL
                     ITLLGFFLYSLWIILEKARNEVLFRERKQSWVKIQFEEQSDESVF"
     gene            complement(18669..19349)
                     /gene="ccmB"
                     /locus_tag="JBH85_02740"
     CDS             complement(18669..19349)
                     /gene="ccmB"
                     /locus_tag="JBH85_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HAU0945106.1"
                     /translation="MNSPFQLFRKQFRREILIQVRQIRYLVNSCLFFLMLLFIFPLTL
                     RPELILMRMFAPGLVWMAILLSMLLSLERLFQQDYEQGVLEQWLVSGQPLNLLVTAKV
                     MAHWLISVTPLLLLSPLIAILFSFNVWETCILLLSLICGTPAILFLCALAAAFGIGIN
                     QRGALMALILLPLTLPLLIFGSGTLSVAMQGLPVSGYLALLLAMSLLAVGFLPYAIAA
                     VIRISHID"
     gene            complement(19346..19948)
                     /gene="ccmA"
                     /locus_tag="JBH85_02745"
     CDS             complement(19346..19948)
                     /gene="ccmA"
                     /locus_tag="JBH85_02745"
                     /EC_number="7.6.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094891.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC exporter ATP-binding protein CcmA"
                     /protein_id="HAU0945107.1"
                     /translation="MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLL
                     KLIAGLLNPEKGEIFFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS
                     PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE
                     LSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEYHL"
     gene            20093..21031
                     /gene="sohB"
                     /locus_tag="JBH85_02750"
     CDS             20093..21031
                     /gene="sohB"
                     /locus_tag="JBH85_02750"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094890.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HAU0945108.1"
                     /translation="MMEFLSEYGMFLLKCITLVIALLILLAGIFSMGRKTKPKMEITS
                     LNEEYEHLNALMNKEILGKKPGKKKKDKTKRPVLYVIDFSGDIKATQVEQLRDEVTSI
                     LSIAKPEDEVLVRLESPGGAVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMAC
                     VANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKG
                     RKKFQEDLEKIHTAFREYVLKNRSQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYL
                     IEKMAEFNAFKLTVHAKLPIISKVLKPAMRLIHPWI"
     gene            21255..21512
                     /locus_tag="JBH85_02755"
     CDS             21255..21512
                     /locus_tag="JBH85_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945109.1"
                     /translation="MSDFKSKLPDLNELTSMTAKLFKGIKTSVSEIIQDYKQKRAQPV
                     STEEKTTENKPAESKTTENKTEPKTESKPESNTEETQEKEK"
     gene            complement(21552..22967)
                     /locus_tag="JBH85_02760"
     CDS             complement(21552..22967)
                     /locus_tag="JBH85_02760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HAU0945110.1"
                     /translation="MRSNDRIYIIDDDKERCDKLRTIFDFIGQFSEATQYGNWQLSVN
                     PNPSVIVLGACTSFEKMMDELDTLVKRFPKTPILVIDAVLSTSECADRNIVDCLSFPF
                     SYAKMLKSLHRCQIAKEAVKFITAGTHKTPLFRSLVGNSEGIRQVRKLIEQVADTEAS
                     VLILGESGTGKEVVARNIHSLSSRANKPFVPINCGAIPGELLESELFGHEKGAFTGAI
                     TSRQGRFELANGGTLFLDEIGDMPLAMQVKLLRVLQERCFERVGSNKSIEVNVRIIAA
                     THRNLEIAIQEGKFREDLFYRLNVFPIEMPPLRNRSSDLSLLFNELVSRIEGEGRPTV
                     RLMPDAMDALCEYSWPGNVRELANLVERLSILYPNGIIGKSDLPHRFQGEYKPSCPEA
                     SGAERETLLQIIKQESVANAEGIDLKEHLVKTELALISQALDESDWVVAHAASYLNMR
                     RTTLVEKMRKYGLTRPERMER"
     gene            complement(23163..23756)
                     /locus_tag="JBH85_02765"
     CDS             complement(23163..23756)
                     /locus_tag="JBH85_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945111.1"
                     /translation="MSNFRNFLVFILLFFSFCGQLTASSKQNLAFRNFWHPTYLGQRL
                     DYCTLDGKECGKEVANRYCQMLGYDYSTQNVIAYNVGLTNYLGSKAQCKGWRCNGFMT
                     IACAIGLSHTPPKPYHYREKKFAVPRYNDYRVDWCMERNKGCGKQAANSFCNRMGYMQ
                     AKDFVKQAQVSATKTIGSQELCFGNQCNAFKMIICYR"
     gene            24144..25160
                     /locus_tag="JBH85_02770"
     CDS             24144..25160
                     /locus_tag="JBH85_02770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0945112.1"
                     /translation="MKKYLTFIVSGLALIAIIWFIRHLWIIGTVKVVHPVYGTAVQAV
                     YATGTVEPTVMMPIASQNTARLVKLNADEGSEVVKGQILASLEDEHLQHNLKELKEHE
                     KLAKIRYERNAQLVKKGVISKDEYDRTLSEWQAASAAVRRIEAQISYLQLIAPADGRI
                     IKRDGEVGQLIPANQPVFWLSCCAPLRVSAEVDEEDIVLVRVGQKVLIRSDAFPNQIF
                     YGRVKSITPKGDPIARSYRVRISFSENNPLLIGMTAETNIIVHEKKNALLLPVSSISE
                     NKVWIVQDDGKLSQNTVTIGARGLKQAEILKGVNINDMVVLQPDNKLKNGQKVRFILV
                     KQEE"
     gene            25160..26410
                     /locus_tag="JBH85_02775"
     CDS             25160..26410
                     /locus_tag="JBH85_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0945113.1"
                     /translation="MKLFLKIALKHLLARKRQSLVSLMGIVLGVAFFLTISSLMQGSE
                     KDFIKRLVDNSPHITIIDEYRNPRIQPIQQLHTNGAIEIRSVKPLTEPRGIRGYEQTI
                     NNLSLTIPGIVISPVLIGQALISYAGKDYSVTLNGMIPEEIKKVSTIENYMTSGSIND
                     LIVNPDGIVLGSELLRKLSLTKDDNITVTAPNGQIRTFKILGVFRTGRSDFDTNQAFI
                     SIKRAQALLNRPNRSNNIIIKLPNPYQAYDIASQIEKQIGYKTISWQEKSEDLLNTLV
                     IRNIIMYSVVSAVLIVAAFGIYNVISTVVMEKHRDIAILKSIGFQKHDIQFIFIIEGF
                     LLGLVGCLLGLPLGSGLMYSLMQVQFKPPGSSELINMPLDWSYLQFVIATAFAMSASI
                     IAAVLPAHKAALVHPVDILRGGGM"
     gene            26407..27084
                     /locus_tag="JBH85_02780"
     CDS             26407..27084
                     /locus_tag="JBH85_02780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0945114.1"
                     /translation="MNKIVIKTKELSRQLSGEVPVTLIKDINLEVREGEFLVISGPSG
                     SGKSSLLYLLGLLDRPSQGTIWLNNEEVSTYEEEKMAWLRLTQIGYVFQFHFLLPEFT
                     ALENVMLPMQRLGKLSLWEMKNRATKLLTSLGLEDQLSKLPKQLSGGQSQRVAIARAL
                     ANDPILLLADEPTGNLDTVSSTNVQNILKKLAHEYRRSVIIVTHDMNFAATADRVIHI
                     VDGKIQV"
     gene            complement(27273..28031)
                     /locus_tag="JBH85_02785"
     CDS             complement(27273..28031)
                     /locus_tag="JBH85_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HAU0945115.1"
                     /translation="MITRDELSLFLLDFLNCSQYQDYAPNGIQVEGKDKIKRICTAVS
                     ASEDVISQAIEQQADALLVHHGYFWKGENPVISGMKRRRIAKLLGHNMNLFAYHLPLD
                     CHPELGNNASLANLLLIESPEMHKINNTANLLWSGKLSKAMNSEQFSSFLEHKLGRYP
                     VHIAGNEKMIHSIAWCTGAAQDFIEEAYQLGVDAYLSGEVSERTFYQAMELGIQYFSC
                     GHHATERFGIQSLGVYLANYFDLEHWFIDSPNPI"
     gene            complement(28028..29296)
                     /gene="murA"
                     /locus_tag="JBH85_02790"
     CDS             complement(28028..29296)
                     /gene="murA"
                     /locus_tag="JBH85_02790"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HAU0945116.1"
                     /translation="MDKLLINGGKALHGEVVISGAKNAALPIMAASLLASDHVTISNV
                     PHLKDITTMMELLGQLGAHLIVDEKMNVQVDSSQVNEFVAPYDLVKTMRASILVLGPM
                     LARFGKADVSLPGGCAIGTRPVDLHLKALRAMGADITVKNGYINARCKKGRLQGKRLM
                     FDTVTVTGTENVLMAAVLAEGITTIKNAAREPEVVDLANFLIQMGAKIRGAGTSTIEV
                     EGVESLNGGTYSVMSDRIEAGTYLAAGALTRGQVTVKKVRPDTLLSQLCKFEEAGAEL
                     TIGEDWVSLNMHNKRPQAVNISTAPYPAFATDMQAQFMAMNSVAEGSSTIIETIFENR
                     FMHVQELQRMGANIQLNGNTAIVHGVEKLTGAPVMATDLRASASLILAGLVAEGETVV
                     ERIYHVDRGYERIEEKLSLLGADIKRVSDR"
     gene            complement(29289..29516)
                     /locus_tag="JBH85_02795"
     CDS             complement(29289..29516)
                     /locus_tag="JBH85_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007018953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HAU0945117.1"
                     /translation="MEQRLNEIDDVFYVKVEGDGYQYQVTVVSDIFVKKSKVARQQWV
                     YAQLKDFITTGRLHAISMKTWTKEEWGKQNG"
BASE COUNT         9393 a         6377 c         5286 g         8476 t
ORIGIN      
        1 atctaaaacc ctattcatgg tacttgtata cagtttgctc tcccctgctt atgcagcatc
       61 acaccccaaa agcacagtga atgacaccgc cattcaaaat gaaatattag tttatatcaa
      121 taattaccga caacagcatg gcctggctcc tctcaaaatg gataaccgca tagtaaaaga
      181 agcaaaaatt cattccatgg atatggcaaa acatgcgata cctttcggcc ataaatattt
      241 taaaaaacgt attgataaat tacacacaca aattaaaaac tcaaatgcag gggctgaaaa
      301 cgtggcttac aactataaaa atgcccagga tgttgtcaaa aactggttac gtagcccagg
      361 acacaaaaga aatatcgttg gtaactatga ccttaccggg ataggtatag ctcgagatga
      421 caagggaaaa atatacttta ctcaaatatt cttaaaaaca ggaaatagcc actttgcctc
      481 cagaaaaccc ttcccatcaa tttttagtgg tgctctcttc agtaagaaag cataaaaatt
      541 aaaagagggt gtttaacaaa atttttgcaa tttttaagtg caattgagtg gaattaatta
      601 caacgttagc ctaatattga aacatagacg gcaatcattg ttcagccaac agtacaattt
      661 tggaggccag attgagagtg tggtgagcaa gctcagccta gactgagaag ccaaaagcac
      721 tccggaggaa tccacagttt taaacaggac tgcactcaat cttgctgtct atagcacact
      781 aacaccatgg ggcgtattca atacgccctt tttattggtt cattcctcgc ttgtccggat
      841 ccaaagatcc aaaattggta ttttatgctg tagaaaatta ttctaaatta caataggata
      901 gaataataac ggtaataagg attttcccat gatgattgca accttaatgg aatcagctca
      961 ggaaacgcga gtagccatta ctcccaactc ggccaaacaa tacataaaac taggctatga
     1021 tgtagggatt gaaaaaaacg cggggcttag ctcagatttt gctaacgaag aatttgaaaa
     1081 agctggcgca ataatattcg atagtaaaag tacattactc aaaaaaacac aaattctttt
     1141 atgtgtcaac gaacctgatc ccaaaaacct gaatggctta cctccagatt ctctaataat
     1201 cggacatata gacaataacc cacttagccc gcttgttaag tggtgtctgg ataaaaaaat
     1261 gacattattt tcaatgaatc tcattcccag gataagtcgt gctcaaagca tggacagcct
     1321 atcgtctcag gctaacctgg ctggttacag ggcagttttg gaagctgcgg caacatttca
     1381 tagagctata cctatgatga tgacagcagc aggcatgata caaccagcca aagtccttat
     1441 tcttggtgcc ggagttgcag gcttacaagc catagctact gcgaaacgtt taggtgcagt
     1501 ggtttatgcc tttgacgtaa gaaaggcagc caaagaacag gttgaaagtt taggcgctga
     1561 attcatagag gtaatgcagg agcaagatag tgaaacagct gggggatatg ccacagaaac
     1621 aagtgaagaa tataaagaac ttcaggctga actcattgat caatatgcaa aaactgcaga
     1681 cattgtaatt tctactgcct tgataccagg gcgtcaagct ccggttttac tttataaaaa
     1741 aactgtcgag caaatgaaac caggttctgt cattgttgat ctcgcaacgt ctcgaggtgg
     1801 aaattgtgaa ctcagtgttg ccgataaaat catcaagcat ggtgagatta ctatagtggg
     1861 attgagtaat atggcaggtc tcgtccctgc tacggcaagt gacctttatt ctaataatct
     1921 ggttcatctt ataaaccttt tggcgaaaaa tccggctgaa cttaacttaa atcctgatga
     1981 tgagattatc cagcaagccg ttctttgcca taaaggaact tacctgccct ttcaaggagt
     2041 aaaggagaag caaaatgcct gagattcata cagttgataa tccttatatt acaatattaa
     2101 ccattttcgt actggcctgt tttgtaggtt attatgtggt ttggaaagta acaccggctt
     2161 tacatacacc cctaatgtca gtaaccaatg ccatatccag tattattata cttggtgctt
     2221 taattgctgc aggaagtgaa ttgatcggat gcatcacctg gttaggtggc atagccatat
     2281 tcattacttc aattaatatt tttggtggct ttgtagtaac tcaacgcatg cttcgcatgt
     2341 ataaaaaata atgatttaaa ggacggaatc agtaatgaat tcaatagttc cactgtttta
     2401 tttattggca gccatttgct ttatattggc tttaaaagga ctggccagtc cagctacttc
     2461 aagaaggggg aaccttctag gcattctggg tatgatcctg gcagtgggct ccaccctgat
     2521 gatgcccact acctaccatc atattctttt aatcgcctta atagcaggcg gcggaataat
     2581 aggaactatt attgctttga agatcaacat gacggccata ccacaactgg ttgctgcttt
     2641 tcattcttta gtaggcatgg cagcagttct ggtagcctat tgtgcctttt tatcccccgc
     2701 gtcctttcaa atcggcacac ctggtgctat tgctaccgca agtctaattg aaatgagcct
     2761 gggattaatc atcggagcca ttaccttttc tggttcagtt attgcctttt taaaattgca
     2821 aggactcata tcaggtattc caattcgatt ttatgctcaa aactatgtca acttactaat
     2881 aggactaaca atcctggtgt tactcatttt atttgtagcc aatcaaaacc tgtttctctt
     2941 taacctgctc gcgggattag cttttctcat tggggtttta ctgattattc ctattggcgg
     3001 agctgatatg cccgtcgtta tttccatgct gaactcctac tcaggttggg ccgcagcagg
     3061 aataggtttc actctgagta atcatctgtt agttatcaca ggcgctctgg taggcgccag
     3121 cggggcaatt ttaagctata tcatgtgcgt tggcatgaat cgctctattt ttaatgtcat
     3181 ttttggtgga ataaacagtt ctggaaatac gaaacaagct cattctgcta atgagttacg
     3241 caatgtcagg caagccaacg gcgaagatgc tgccttccta ttaagtaatg ccaaggatgt
     3301 catcattgtt cctggatatg gaatggcagt ggcacatgct caacatgcgg tgaaagagct
     3361 tgttgatgcc ttggaatctc gttctattcg tgttcgtttt gcaatacacc ccgttgccgg
     3421 acgcatgcct ggccatatga acgtattact tgctgaagcc aatatcccct atgacagagt
     3481 ctttgagcaa agtgaaatta acagagattt tgctacctgt gacgttgctt acgtgattgg
     3541 agctaacgat atcaccaacc ctgcagctaa aactgatcct gcctccccca tttatgggat
     3601 gcccgtcctg gaggttgaaa aagctaaaac ggtcctattc gtcaaacgca gcttatctcc
     3661 tggttatgcc ggtgtggaaa acgatttatt ttttcacgac aacacctaca tgcttttcgg
     3721 agatgccaaa gtaatgactg aatcaatagc taaggctctg ggagaaatat aaccctttca
     3781 aaattatagc aataatctct tacggggtgg gtacccggtt caatcgacgc aaatgccttt
     3841 taatttgcca acgaagcaaa ataaatgtat cttagccagt taatttttca taatggagat
     3901 atatctatgc tacgaaaaat cggctttacg ttgttatgcg cagtggcaac atttagttca
     3961 agcacttatt ccagcgtgac tcacacactc caagctggag taacgctaga atacgagttc
     4021 ccccctaatg aacctctagt ctttgttaat tatttgtatt gggaagtagc ggccgattgt
     4081 aaaattacca gtgaagatcc atccaatgaa ctttttgccg aggcactcgc aaaagccggt
     4141 aaaattaatg gtgttacgct ctctaaagga aataccatga aagtgactgt ccattccggc
     4201 gatattttaa aactaagcgc ggaatctgga gcaaaagttc aaatcactaa ttttggacca
     4261 catactctca aagcaacttg tactgcataa agaattgaac taaccgcacc ccaatagcga
     4321 acagtaacgg ggtgcgaaca ttcaaatcct gttcatcaat gctctcgagt agcgcagaac
     4381 ttaatcttcg gataacgctc ctctgccatt gtcaaattca ctttggtagg tgccaggtac
     4441 ataagcatat ctcctccgtc caaagccaaa taatcataag ccttggtacg aaactcgctc
     4501 attgctttat catcttcaga ataaacccat cgagcgcaac tcacattgac tgattcataa
     4561 atacaatcca ctttatattc atgtttcagt ctatgcgcta ccacatcaaa ttgtaatatc
     4621 ccaacagctc ccaatattaa ctgattgctg tttaatggcc taaaaacctg ggtagcgccc
     4681 tcttcagata attcgattaa tcctttaagc aaggctttac tctttaatgg gtccctcaac
     4741 ctaacaagcc taaacaattc aggagcaaaa ttaggaattc cagtaaactt taattgttca
     4801 ccttgtgtaa aagtatcacc aatacgaata gtaccatgat tatgcaaacc aataatatca
     4861 ccagccaaag caagttctgt gtgtgatcta tcgcctgcca taaaagttaa ggcattggaa
     4921 atttgcactt ctttccctat gcgtaaatga cttaatttca ttcccttctt gtaagagcct
     4981 gaacaaaccc gcacaaaggc aattcggtct ctgtgtttgg gatccatatt ggcttgaatt
     5041 ttaaaaacaa aaccggaaaa tgtttcttca ttcggagaaa caactctctc ctgagttgct
     5101 cgaggttgag gtcctggcgc atactcgaca aaatcgtcca ataattcttt aataccaaaa
     5161 ttattaattg ctgaaccaaa gtataccggg gtcatttttc ctgcaagata atcttccaag
     5221 ttaaactcgt gggacgctcc tctgactaat tcaatttctt ctctcagttc gtctgcactg
     5281 tcacctatca actcatctaa ttgaggatta tccaatcctt taatctgcat agcttccact
     5341 ttttttgcat tacttccttg ctgatataaa taaataatat cttgatagcg gtgataaatc
     5401 cccttgaagc gtttacccat tccaactggc caggtaattg gcgcacattg aatgcccaaa
     5461 acagactcta cttcatctaa caaatcaata ggttctcgcc cttctctgtc caatttattg
     5521 ataaaagtca tgatcggtgt atcacgtaaa cggcaaactt ccatcaattt taccgttcgc
     5581 tcctctactc ccttggccac gtcaattacc attaaggcag aatctacagc tgtgagagta
     5641 cgataggtat cttcagaaaa gtcttcatgg cctggtgtat ctagcaaatt aatgacgtgt
     5701 tgattatgta taaactgcat aacggacgta gtaatcgata ttcctctctc tttttccatt
     5761 tccatccaat cagaagtggc atgtctgtct gctttacggc ctttgaccgt acctgccaac
     5821 tgaatagctc ctccaaaaag taataacttt tcagttacag tggtctttcc tgcatcaggg
     5881 tgagaaataa tggcgaaggt acgccttttc ttaaagtctt gataaaaatc agacatactg
     5941 ctctcaaatt aagtaattaa ttaaaaataa tagacttcaa tcgcatagta tatcatggaa
     6001 cttgggaccc cataaacgta gcgaattaaa atcattcctg tatactcaaa attagaacct
     6061 gttttcatgc gatcacttgt gatcaaaacc tggtctaatc tgttccctgc taaactggtt
     6121 ctttaaatta aaggatttaa tttaaaaaag gagtttgcta tgagattcaa tcattttatt
     6181 gctccactgg ttttactccc tgtttgtgca ttaagccaac cccaaaatga caaaggagat
     6241 gtctttttat caaaaattcc aatcagtaaa aatgcttttg taaaatctta ttccagcgaa
     6301 tcggcagaat tcaagttact tgaatctaat gccagaagca ttgactaccc tactcaaatt
     6361 attcgtatct ctggttctct cgaatcacaa cagctggact gcgatcaagt acacgcagaa
     6421 attcttgaaa aagtggtggc tccttttgct cctgataaat ttacttacaa tacttatatt
     6481 agttgtagtt ataatccgga taccaatatg gccactggct ttctcatcaa tagctattta
     6541 gatccactaa ctgatgatgc agtggaatta ttagaaactt acctggcaaa aaataatgga
     6601 tccaatctgt taggtacacc attgacattt gagcctgcaa aagctcttgt tgttgcttta
     6661 actatctcgg cgggaatgaa aaaaaatcct aataaaccac ccttcgtaga atataagcaa
     6721 gatcgaagca acttctactt caaaagcaat tatgaaatga gaaataaatt gttcactgat
     6781 atttatcaaa atttctttac caatgatccc aataaaattc tacctttcct ggataagtgg
     6841 attttcgtta atgcctcaag cgtttatgaa gccattttaa tggactccaa ttttgtcgaa
     6901 ctgcaacctg aacgaatttt tcttatggaa aatggtgaac agatatttgt gtctaatcta
     6961 aaatattatt tcactcataa ttgtaatagg tacagtaatc accgctgctt acaaccgcaa
     7021 gcttgaagct cttttgacga aggagacatt ttggggatga gcacatttta ttaaattatt
     7081 acttttagat acttccttat gacagcaagc agataatatt tcagactgct cttcaaccat
     7141 aaggaagtat tcatacggga aatctattat tcccccaatc aaatccagaa aactaaagta
     7201 tcattaattc caatccggaa gatgagcttt caaaataact cactaccatg gcatcagtga
     7261 ccaactccaa actggacggt ctccattgag gatttttatc tttattaatc aataaagagc
     7321 gaactccttc ataaaaatca ctacctttca taaaatgact ggccagatcg aaatccattt
     7381 ttaaacattc tgctaaagat aagcccttgg ctttttggat ttgtgcaagg gttatcttaa
     7441 ggctcagagg cgatttttgc agtaaagtat tatccactcc aagagcccac acaccgtctg
     7501 tgctctgcaa cgacgctctt attagttcaa cactaggctt ggagaaacaa acatcgatta
     7561 aaggtttgat ttgacttgcc tcggtgggca tggcattact tgcaaaagaa gaaatgcatt
     7621 gatcgacacg attgaaagca tcttctgata aatcttctct ctttaatgcc tcaatcattg
     7681 actgcatttg ctctgcaaag acaatctgct tcactaaccc tgccttcctt gcatcatgag
     7741 gacccaattt atttccggtt aaccccaaat agactcctaa aaaccctggg catctgttta
     7801 ataaatagct ggcaccaata tcaggaaaaa aaccaatccc tgtttctggc attgcaaata
     7861 caaaacgctc actggcaaca gggtggcttc catgtaagga aataccaacc cctcctccca
     7921 tagtaacccc atccagcaaa gaaatataag gtttaccaaa atgatgaata aaatggttta
     7981 acctgtactc atgccaaaag aactgcatct gctcagagtc tttactacga cccgcattat
     8041 atagccaacg aatatcacca cctgcgcaaa aagcattgcc cggaacagct tgcacgacga
     8101 ctgctttaat agaataatct tctttccaaa ttgacaattg cttttgcaac gccatgatca
     8161 tggttaaagt taaagcattt aaagcctttg gtcgatttaa agtaatgaat cccaattgac
     8221 cttcctgaga aaacagcacc tcttcagtca taattaaacc cctttaaaat ctgcagttct
     8281 cttgtttaga aatgcagcta ctccttcctt cttatcttca gtggcacaaa cttttgcaaa
     8341 atgaattgct tccaaatgaa gtgcctctgt gagtgataaa tcataaccat gatctatcac
     8401 ttccattaca ctggcaactg ctaaaggagc catgcttaat attccgttta gaatattttt
     8461 tccttgagtc aacaaatcct ctggtgccac aacttcatgg actaaccccc agtttaaggc
     8521 agtatcggca ttgataaagc gccccgtcag acataaatcc atcgcgcgcc ctttgccaat
     8581 tagcctggcc aatcgttgtg tgccgccata cccgggaata acacctaact ttacctcagg
     8641 ctgaccaaac atcgccttat ttgaagcaat tctaagagtc gcagatatcg ctaactcaca
     8701 tccgccaccg aaagcaaaac cattcactgc agcaagtgaa ggtttcccca tcgtttccaa
     8761 aagtcgaaaa acctcttgtc cctggcaagc aaattcataa ccagtttgag cgttacattc
     8821 agccagtcga ttaatgtcag ccccagcgca aaatgcttta ccatttcctg ttaacaataa
     8881 tgctttgact ttgggattgg atttcgcttg aaagaataat tcatttaatg cgttcagaac
     8941 atcagtgctt aaagcattga gcttctctgg cctattcaaa gttaaagtta agattccgtt
     9001 attatctata tcctgttcaa ttaaattcat caataatccc ctatgattac tctataaaat
     9061 actcttcatc caaacttgct ttcgctataa tttcacgcat gatttcatta gtcccttcaa
     9121 gaatctgatg aactcttaaa tctctaaata ttctttcaat ttgataatct ctcaggtagc
     9181 cataacctcc atgcaattgc atggctttat cactaatacg aaatgcgaca tctgtagcca
     9241 agcgcttgcc catcgcacaa tacattggcg cattggggtc atcattatcc attgctgctg
     9301 cagccctata aaccatcagc cttgccgctt cataatctgt taacatatcc gcaaaataaa
     9361 aacgaagagc ttgcatctga gttaaaggtt ttccaaactg tttgcgctca tgcatataag
     9421 attgactcat tcgcaggcaa gcaagagccc ctcccaatga gcaggaagca atattcactc
     9481 tccctccgtt taaggcattc agtgcaattt taaaacccat accttcttca ccaacacgat
     9541 tggcaatggg cacacgacaa ttttcaaaat atagcataca agttggctga tttcgccaac
     9601 ctaatttttt ctccagtttg ccaaatgtca gaccaggagt attcttttca attaacaaac
     9661 aactgatgcc atgatgagat tcatcgcctg tacgtaccat acataaatac acatcactaa
     9721 cacttccacc cgatatgaat gctttcgcgc cattaagaac ataatattca ccctctttta
     9781 ccgcgcgagt ttttaaagag gctgcatcag atccggattc tggctctgta agacaataac
     9841 tggctatcac ttccataccg gttaattttg gtccccattt tttgcgaatc tcttggctgc
     9901 catagcggtc gaccaatgaa gcgaccatat tatggatgga gagatatgcg cttgttggaa
     9961 tacagcccgt agcgagttgt tcaaagatga gtgctgcatc cagacgagag agctgagcac
    10021 ctcctatgtc ttcgcggact accattcccg ccatacctaa ttgcgccgct tctcttaaaa
    10081 tttcgattgg aaagtaacct tgttcatccc agaaatctgc cattggagcc agtttgttac
    10141 gagcaaactc ggaggccatt tctcgaaatg ccaaatgttc atcagtgaaa ttaaaatgca
    10201 tagaccatcc ttagatttat tgattttagt cattggattt atttatgacg ctttcttaaa
    10261 aaatgatatt attgcgaatt tttagcgccc aggaaagata ataagaataa ttacatggga
    10321 actttagcgc aaccatcttt tataaatcca aacgcattgg ctgttttaaa aaaatatttt
    10381 ggatttgatt ccttcagacc tcctcaggaa aaaataattg aggatgtcat ttctggggaa
    10441 gatgtactgg ttttgatgcc tactggaggg ggaaaatcgc tttgctatca aattccagcc
    10501 attgtccgcc ctggtgttgg cattgtagta tctcctttaa tcgcgttaat ggaagatcaa
    10561 gtaaccgctc tcaaactgca gggtattcgt gcggcttact acaactcatc cttaaccgcc
    10621 gaagacgcta gaaatgtatt aaatcaatta catcataatg aattggattt actctatatt
    10681 gctccagaac gtcttattag tacctcgttt ctggatcgac tgtcagaatg tactatctct
    10741 ttatttgcta tcgatgaagc acactgtatt tcacaatggg gacatgattt tcgacctgaa
    10801 tacgcctgtt taggtttact gaaaactaac tttcctgaca ttcccatgat tgctctgaca
    10861 gctactgccg ataagcaaac acgtgaggat attgttacca agttgaatta tcaacccaaa
    10921 aaatacgttg tttcattcaa tcgaccgaat atccattaca aagtagttcc taaaacaaat
    10981 gcagtgaagc aattaaatct gtttttacaa tctgataccc agcaatctgg aattatttat
    11041 tgtggaaccc ggcatacagt cgaacatctt acagcgaaat tacaagaact tggatttaaa
    11101 gcacgcgctt atcatgcagg cctgcctcat gcggagcggc gtgaggtgca aaaccttttc
    11161 agatacgatc gcattgatat tgtggtagct actattgctt ttggaatggg tattgacaag
    11221 cctaatgttc gctttgttgt tcaccatgat ttacccaaaa gcatcgaagg ttactatcaa
    11281 gaaacaggtc gtgcaggacg tgacggatta ccggccaagg cccttcttct ttatgatgct
    11341 gcggatagtg cccgtttgcg gtcctggatc atgaacattc ctcttgagga gcaaagacat
    11401 atagaaacca ataaattaaa tcatatgctt gcttttgctg aagcgtcgca ttgtcgtcgt
    11461 caaattttat tacgctattt tgatgaacct tctcatacag aatgtaaaaa ctgtgatgtt
    11521 tgcgataacc caccgcaaac agccgatgca acagaagatg cgcaaaaatt tttatcgtgt
    11581 atttatcgat taaaacaaag ctatggttta actcatacta ttgatgtcct gagaggtagt
    11641 ttatctgaaa aaatcaagca gtctgggcat gagcatttaa gtacctttgg aattgggaag
    11701 gagaaatctg ccaattattg gaagcatctt gcctggcaat taattcataa ggattattgt
    11761 ttacaggaca tgaatcattt taatgtgtta cgcttgaccc caaaagcgat tcccctccta
    11821 aaaggtgtag agagtatttc attaaccatc cctaacaatg acctgaatag cagtaaaaag
    11881 aaaggcaagc agaatccttc ctttaaacct gaaagtaacc cattatttga aaagcttcgt
    11941 gcgttaagac gtcagttagc cgatgaagaa aacaaaccac catttatgat attcagtgat
    12001 gctacattac atgaaatggc ccaattaaaa cccaaaaaca gtaagcaact actgaatgta
    12061 tcaggggttg ggcaacataa attagctcgt tatggccatt attttctcga agccttaaac
    12121 gaattttcag aagtcgagtg agattccgtt atgcgtaaat taccaagacc tttttacgaa
    12181 cgtgataccg ttctggttgc aaaagaactt ttaggtaaat atttggttca tcatgatgga
    12241 ttggaagaga agattgggcg cattgtagaa gtcgaagcct accttgggca acatgatttg
    12301 gcttgccatt catcaaaagg attgactaaa agaactaaag ttatgtttgg gccagcaggc
    12361 tatgcgtatg tttatctaat ttatggtatg tattattgca tgaacgtagt cactgaaaag
    12421 gaggggatag gttcagcagt attaatacgt gccctggagc ctatcaaaaa cattcaagac
    12481 agaactcaag gaccagggtt attatccaaa gccatgcgca ttgactccaa actgaatcat
    12541 cgtgatttat taagcaatga tttttatatt gctgagccaa acagtccaac tgattttacc
    12601 attatagaaa aacccagaat tggggttcat tatgctaaag aatgggctaa tgagttatta
    12661 agattttata ttaaagacaa tccttatatt tcgaaaacct gattaggcct cgtgcataac
    12721 ctgtctcttt cattttattg ccgcattgca aagatttctg tgatgctcag ggtatgtaaa
    12781 aagcgtatta ttgtattaat gagcccatta ttattacatc cctttcttca agcatgtcct
    12841 gtcaatcccc ggatccaggc tttgtgccta atccgggggt aacttcttga aataactcta
    12901 ctctaaccca attgccttgg gcgggcagat ataggcatta cccagattag tcacattggt
    12961 ttgttctgaa ccgccactca taaaaccacc atgacgatca aatgaaccac tcatggaacc
    13021 agttacaccg gctcggttcg taaccaattg aatgtaattt gccccttttt tgcttgcttt
    13081 attcttcaga tcattcattg ctccctcttc caaattgcga ttggaagtaa agcctccggt
    13141 aaagaaatta ccctgattgc ctacgacctg gcccacgtat ttgcaacctt taggtgccgg
    13201 attcgggctt gcaatgacac gttcggactg aggatctgct ggaatagctg cacatccggt
    13261 aatcatcaaa gtaataacag acgcagatag tagttttttc ataattacac ctttttgtta
    13321 tcaacaaaac aatgaaatgt taacaactcc tgtttgatta aacattacaa cccactttta
    13381 aatgcacttg ataatatttc actttattat catcaatgaa acctcttgtt tctactactt
    13441 caaaccaatc caatttccca tgcgttttag ccacttgctt tattgcatta tcaattgctt
    13501 tttcaattcc ttcctgcgaa gtcccaatta actccacgat ttggtaaact ttatctgtca
    13561 ctcttctttc cccctctatt aatttgtttc tcagcttttg ctattgcctt gcgaatagcc
    13621 aatgcttctt cggactgcgc tggcgccaac tggagtagcc gttgccagta attaatcgca
    13681 gcttcataat catgacttaa gtaagcatgc atcgcaagca tggctaaagc atccggttgc
    13741 ctggggttat tttttaataa ggtatgaaaa atttctaaaa tatcaggatt gaactgttga
    13801 ttactcaatt gccataaact gtgggcataa ttgactgcaa attgctcgtc ttcaggttta
    13861 agctggtggg cttttgcaaa agcgagggaa gcattttggt tatccttttg actactgtat
    13921 aatctgccta acaaatacca acccttggca ctttcaggct gcgcatccaa cttggccttc
    13981 agcttgtcga ttaattcctg agggctttta atcgatttta gcatcgattg cgctagctcc
    14041 tgagcctcat ttcgatgtag atattcttgc caccgagcaa aatctcccca aaaatagtac
    14101 cctgtaaaaa ccattataaa aataatgggg gcgagcaaca aacttaccaa acgattgcgc
    14161 cgcaaaggat aggtaataag agtgcatgca aaaacggcta aaacaaccaa taaaataact
    14221 aaccaccatt cattcatgag aatttcgctt aaaacatgtc cgccaaaaaa taataaagcc
    14281 aatcaataaa aacaggaatg ggccaaacca caataaaaga gtcacgctct taacaggcgg
    14341 tttaaatagt ataaaatccc cataacgtgc agttagataa tccattattt cactatcgct
    14401 tttgccctct ttcactaatt cataaacctg aaaacgtaaa tccttcgcta attgagcatt
    14461 tgaatctgcc aaatcctgat tttggcatac caaacaacgc aaatctttta aaagatggtt
    14521 aaattgtgct tcttttcttg ctgagtccaa tggatacatg ctatttgcaa acgcaacgga
    14581 tactaatagc agcaataaaa tcaccttaaa acagaagtgg aatactctca ttatgatttc
    14641 tccaaattcc tcattaaagg taaaatatca gttaaccagg ttttctgatt cattattccg
    14701 acatgcctgt agcggactat tcctttctta tcaatgacaa aagtttcagg cgccccgtat
    14761 acacctaagt caatagcgac tttaccttct gaatcctggc ctatgagtcg ataagggttc
    14821 ccccattgtg caagccatgc tctcgcgtgt tctggattgt ctttataatt taaaccatag
    14881 ataggtacgc cttctcttgc gagttgcaac ataaatactt gctcttcaac gcaagcctca
    14941 caccaacttg cccagacatt aagcaaaacg acctgattat gaaagttcat tgcactaaaa
    15001 gtagaatcgg gattttgtaa ctctggtaag gcaaagtctg gtaatggctt tccaattcga
    15061 gctgaaggca aatgatgagg atccaaagat aaacctcgcc agaggaaaaa acataaaaga
    15121 caaaaaatag cgataggaat aacacgccat cctatttttt tcatatcttg atctcctgcc
    15181 ctgacattac cgttacttgc ctttttctgt aataccttct atctgttaat gccaaaacgc
    15241 ctccggctaa aatcataaat ccgccagccc aaatccagcg gaccaacggt ttataataaa
    15301 tacgtaccga ccaggcatcc tcagacagtg gctcccccaa agcaatgtaa atatctcgga
    15361 aaggagtcac atcaatcgca gactcagtca ttggcatttg tccaatggta tacactcttt
    15421 tttcaggaaa aatttgcctg gttttattct gatattgtat tgaaaactca gcccttgtcc
    15481 ctttgtaatt tgggccactc aacggagtct gattaatgaa tccaatctga taatccagca
    15541 gattcacttg cttgccagga gacatacgta catcatcttg tacgccataa gctgaagaaa
    15601 cagcaatgcc aatcactgtt gctgcgacac cacaatgagc caaaaccatc ccccaataag
    15661 cctgtccaac tcctgccacc cctctatccc tgactttgtg atacgccgca ttagcagtac
    15721 tcaacaaaac ccagaatgcc aaaattaatc ccaaaagggc tgtaaggtgt atttcagttg
    15781 aggtacagaa tagtaaaatg acaggcaata tcagactaag caaaaaaata cgatttagct
    15841 ttctgaagac atcccgccaa caatcattct gccatttcaa acggacacct aaccccatta
    15901 gcaacaataa aggaatcatt aatggaacaa ataccgcatt aaaatagggc gctccaacgg
    15961 ataatttacc taaccctaac ccttccacca gcaatggata aaccgtgccc attaataccg
    16021 tcagcataat aaccactaaa aacacattgt ttaataacaa cgcactttct cgggataata
    16081 agccgggatg tttattgact tgcaaggttt gggctctgaa aagaaacaat gttaaagaac
    16141 ccccaatgac gaataacaaa aatcccagaa tatataatcc ccgctgagga tcaacagcaa
    16201 aggcatggac tgaagttaaa actccagagc gaacaagaaa agtaccgatt aaacttaaag
    16261 aaaaagcagc gattgcaagc aacatggtcc acgctttaaa ttgctggcgt tgctctgtaa
    16321 ctgccaaaga atgcaatagt gccgtaccaa ccagccaggg cataaaagaa gcgttttcta
    16381 caggatccca aaaccaccaa ccaccccaac ctaattctct ataagcccac caactgccta
    16441 aagtaattcc cgcggttaaa caacaccagg cagccagagt ccagggtctg gtccatttag
    16501 accaactggt ttctactttc cctgcccata aggcggcaat agcaaaagca aaagcgacac
    16561 aaaaccctac atatcccatg tacaacatag gaggatggaa taaaaagcca ggatcttgca
    16621 gcaatggatt cagatcacgg ccctgtgtat tcaatacttg aaattggcgc aagaaaggat
    16681 tggaagtcat taacaaaaaa agaataaaac caatgcttag ccaacctaaa ataactaata
    16741 cccgagcgcg catttccgta tcaaggcttg agctaaaaaa acaaaccagg atcatccaaa
    16801 aactaaggat agcgacccat aacagcatgg aaccttcatg cccaccccac acagcacaaa
    16861 atttataaaa ccatgggagc aataagctgg agttattcag cacatagttc accgaaaaat
    16921 catccatcaa aaaacaggcc gtgagacata ggtaagcaca tgccacaaat aaaaattgca
    16981 gtacgacata attcctggag gaatcaatcc agtctttccg attgaattgc aaacccgcca
    17041 atggaatcaa agctaacatc aaagaagcca ctaaagccaa aatcaaaaaa aacagcccta
    17101 attccgctat cattgtttca ccttatcagc taaagcagac tttacttgag gtggcatata
    17161 attggcatcg tgttttgcca aaacttgtgt agcatgaaaa tgatgattat cagttacttc
    17221 tccttccgca actattcctt gcccttctcg aaataaatcg ggaagtatcc ctgaataggt
    17281 aacaacaatc gtgttttcaa aatccgtaat tttaaactgg acatccaaac cttttttggc
    17341 acgtactatg ctgtttgctt ccaccatacc tccaactcgg atgtggtgtt ttgctggtgc
    17401 ttctcccgca acaatctgcg tgggggtgta aaataaactg atattttgtc ttaaggcata
    17461 tagaaccaag gcagccgctg cagataaaac agacagggca aacagtaaga taaataattt
    17521 gcgtcgccgt acaggggtca tttaacctat ctcttaaacc aacgttgtaa ttttttgcgg
    17581 gtacgagttc tttgccactt tattcctaaa atattcatgc ccaaaaccac gcaaaccaaa
    17641 ccataagcag gccaaacata gaaagaataa ccgcccattg ccaaccattc aaaaaactga
    17701 ttcatcagac tgttcctcaa attgaatctt aacccatgat tgctttctct ccctgaataa
    17761 gacttcatta cgtgcttttt ccaaaatgat ccataaggaa tacaagaaaa aacccagcaa
    17821 agtgattaac aaaggataca acatactgag agcaattttg ggtttggaaa acacagataa
    17881 agtcgcacct tggtgtaaag tattccacca ataaactgaa taatgaatta ttggtaaatc
    17941 aattaagccc accaaagcta aaattgctat tattttatct ccatcttctt tattttttac
    18001 cgcttgatag gtagccagaa ttgccagata gagtaacaaa agtattaact ctgaggtcag
    18061 gcgcgcatcc catacccacc aggcacccca catgggttta ccccaaatgc tccctgtaat
    18121 taaagcaaga aatgccatgc aggcacctaa ttgcgcgact ttatgaatca aaagccctgc
    18181 catcttgata cgccacacca acaataaaat ggccagaaac cccatccagg catacaatgc
    18241 cattgataaa aaagcgctgg gcacatgaac aaaaataatt cggtatgcat ccccttgctg
    18301 ataatctggt ggagcaaata ccaatcccca aaccatacca atgactatgg tagctaaagc
    18361 actgactgcc aaccagggaa tgaggcgtcc cgcgtagtta taaaaatttt ttggcgatgc
    18421 caactgatac aatatcttcc acataggaaa caataaaatc aaaaagaagg attctaccac
    18481 gcatcaaaac aatcacaaaa caatcacaaa atttagttcc aaacttaggg tctgttgaca
    18541 tttcgctcgc ttgagtcgaa aagccttgat tttcgagcac cgtagcggag catacataga
    18601 agtatgtgag taacggagca cagaaaatca aggcttttcg gccaagatag tagaaatgtc
    18661 aatagaccct agtctatatg actaatacgt atcactgccg caatcgcata gggtagaaaa
    18721 ccaactgcca atagagacat cgccaataat aaagccagat agccgctaac cggcaaacct
    18781 tgcatcgcaa cgctcaaagt accactacca aatatcagta aaggtaaagt taacggcaat
    18841 agaatcaatg ccatcaaagc cccacgctga tttatcccta taccaaaagc tgctgcaagc
    18901 gcacataaaa ataatatggc aggcgtcccg caaataaggc tcaataacaa tatacatgtt
    18961 tcccaaacat tgaatgaaaa taatattgca atcaaaggag ataataataa tagcggtgtc
    19021 acagatatca accagtgtgc cataactttg gctgtcacga ggagatttaa tggttgccct
    19081 gaaactagcc actgttcaag aaccccttgt tcataatctt gttgaaacaa ccgttctaac
    19141 gaaagaagca tggataacaa aatggccatc cacactaatc cgggagcaaa catacgcatc
    19201 aatatcaatt ctggtcttag agtaagagga aaaataaata acaacattaa aaaaaataaa
    19261 cacgaattaa ctaaatatct gatttgccgc acctggatta atatttcacg cctgaactgt
    19321 tttctgaata attgaaatgg ggaattcata gatgatactc ctcataatct gccttgttta
    19381 aaggcaaatc ctgatgagag gtcaataata cagcaccacc ttttgccctg tgctcctgga
    19441 tttttgtgat aattgtaagc aatgataact catcaagagc aaccaaaggt tcatcaagca
    19501 accataattt tgcttttgac atccataatc ttaataaagc aacttgcctt ttttgtcctg
    19561 aggatagtaa tccacaagga taatcaataa ggtgttctaa actgaataat ctgcataatt
    19621 ctgtaatccc cactgcacca ggagaaaaat gtatgtcata taaacaattt tctcttagtg
    19681 taagataggg attaatcccc gatctatgcc ccacaaaaca taattgcttt tgataggtgc
    19741 atagatcttt ttttatagat tgcctttcga agaaaatttc tcccttttca ggattaagca
    19801 aacctgcgat taatttaagt aaagtcgttt ttcctgctcc attggaacct tttaaatgca
    19861 ataagcctcc agcaggaaga tgaaaagaaa tttgttgcaa caatggctgg tcatgatagt
    19921 caaaatcaag ttcaatcaca tcaagcataa aacactttat ttttagatac actcggctaa
    19981 ctataacagg acataagaaa aatccccaat gccttcgtga aaagttattt aatttttgct
    20041 tgcgaagtga gtggatgatc gccataatct gctttatttt ttgcaaaggt atatgatgga
    20101 attccttagt gaatatggca tgtttctctt aaaatgcatc actctcgtca tcgcattact
    20161 cattcttctg gcaggtatat tttctatggg tcgcaaaact aaaccgaaaa tggaaattac
    20221 ctctcttaat gaagagtatg agcacctgaa tgccttaatg aataaagaga ttttaggaaa
    20281 aaaacctgga aaaaagaaaa aagataaaac aaagcgcccg gttctttatg tcattgattt
    20341 cagcggtgat atcaaagcaa cccaagttga acaactaaga gatgaagtca catcgatatt
    20401 aagtatagca aaacctgagg atgaggtttt agtaaggttg gaaagccctg gaggggccgt
    20461 caatggttat ggacttgctg cgtcccagct acagcgaatc cgtgataaaa aaattccttt
    20521 gactgtcagc atagacaaaa tggcagccag cggcggatat ttaatggcct gcgtagcaaa
    20581 taaaataatt gctgccccat ttgcaataat cggctctata ggcgtagttg ctcaaattcc
    20641 taattttcat cgctggttaa agaaaaacaa cattgatgtt gagctattaa ctgcaggaga
    20701 atacaaacgc actctaacac tttttgcgga aaatactgaa aaaggtagaa aaaagtttca
    20761 ggaagatttg gaaaaaattc ataccgcatt cagagaatat gttcttaaaa atagaagtca
    20821 actcgatata gataaggttg caactggtga acattggata gcaaaagatg cttttgatct
    20881 ccggctcgtt gataagttag ctactagcga tgaatattta atagaaaaaa tggcggagtt
    20941 taatgcattt aaattaactg tccatgccaa attgccaatt ataagcaagg tgcttaaacc
    21001 agcaatgaga ctcattcatc cgtggattta aaaattagta ctgaaacagc ttgggaacgc
    21061 tattgaaatt caataccgtt aaatcaggca gcattccata ggaaacgaga tcaattttat
    21121 catgggctta aagattgatg atggtagccg aatttaagga attaatgagc aaaaacttta
    21181 aaaatctgcc attaaccaaa atttgaatct cggtatataa ttaaagaata acaatttttt
    21241 ctgaggagta agacatgagt gatttcaaat cgaagttacc agatcttaat gaattaacat
    21301 caatgaccgc gaaattattt aaagggatta aaaccagtgt cagtgaaata attcaggact
    21361 ataagcaaaa aagagcacag cctgttagta ccgaagagaa aaccacagaa aataagccag
    21421 cggaaagcaa gaccactgaa aacaaaactg agccaaaaac agaaagcaaa cctgaatcaa
    21481 atacagaaga aacacaggaa aaagagaaat aattctgtgc tagcaagtaa gtgatacgag
    21541 gtgagctgta tctatcgttc cattctttct ggtcgagtta agccatattt gcgcattttt
    21601 tcaactaaag ttgtccttct catgttgaga taactggctg catgagcaac aacccaatct
    21661 gactcatcta aggcctggct aatcaaggca agttctgttt taaccaaatg ctcttttaaa
    21721 tcaattccct ctgcattggc tactgactcc tgctttatta tttgcaacaa agtttcacgt
    21781 tccgcccccg atgcctctgg gcaagatggt ttatattcac cttgaaaccg atgaggtaaa
    21841 tcactcttgc caataatacc attagggtaa agaatagata atctctccac caaattagct
    21901 aactccctca cgttacctgg ccaactgtat tcgcataaag catccatagc atcgggcatt
    21961 aatcgaacgg taggtctgcc ctctccttca attcgagaaa ccagctcatt aaaaagcagt
    22021 gataaatcac tacttctatt acgtagtgga ggcatttcaa tgggaaatac attcaatctg
    22081 taaaacaaat cttctctaaa tttcccttct tgaatagcaa tttctaaatt tctatgtgta
    22141 gcagcaatga tacgaacatt gacttcgatg cttttatttg aacctactct ttcaaaacaa
    22201 cgttcttgta aaactcttaa taacttaacc tgcatagcta atggcatatc tcctatttca
    22261 tccaggaata gagttcctcc attggccaac tcaaaacgtc cttgccttga tgtaatcgct
    22321 cctgtaaatg cacctttttc atgaccaaat aattcactct ccaataactc ccccgggatt
    22381 gctccacaat tgatagggac aaatggttta tttgcacggg atgaaagaga atgtatattg
    22441 cgagcaacga cttccttacc cgtacctgac tcacccaaaa tcaacacact ggcctcagta
    22501 tcagctactt gctcaatcag tttgcgtact tgacgaatac cttcactatt cccaaccaag
    22561 cttctaaata aaggagtctt atgggtacct gcagtgataa atttaactgc ttctttagct
    22621 atttgacacc tatggagcga tttaagcatt tttgcatagc tgaatggaaa tgataaacaa
    22681 tcaacgatat ttcgatccgc gcattcagat gtagaaagca cagcatcaat aaccaatatt
    22741 ggagtttttg gaaacctttt gactaatgta tccaattcat ccatcatttt ttcaaaagaa
    22801 gtacacgctc caagaactat cacgcttgga ttaggattaa cactcaattg ccaattgcca
    22861 tattgagtgg cctcagagaa ttggcctata aaatcaaaaa tagtccgaag cttgtcacaa
    22921 cgttccttat catcatcgat aatataaatc ctgtcattgc tcctcataaa cctatcctta
    22981 agtttgagtc atttaattta aagtatcgga cacataatga ataactgtca aataattgtc
    23041 acaatttatt ttaaccgtca taaaatctat caaattaggc cgtatcgtta taattaaaaa
    23101 aatactaacc tatccagatg ctaattaaca aatcataatc atcaccagac taagtgtttg
    23161 atttatctgt aacaaataat catcttaaac gcattacact gattaccaaa acataattcc
    23221 tgacttccta tggtcttcgt agcactcact tgagcctgct tcacgaaatc cttggcttgc
    23281 atatatccca tacgattaca gaacgaatta gcagcttgtt taccacagcc tttattgcgc
    23341 tccatacacc aatccactcg gtaatcatta taacggggta cggcaaattt tttctctcga
    23401 taatggtaag gtttgggagg agtatgtgat aaaccaatag cacaagctat tgtcataaaa
    23461 ccattacaac gccatccttt gcattgagcc ttgctaccca agtaattagt taaaccgacg
    23521 ttataggcaa tgacattttg agtggagtaa tcataaccca gcatttggca ataacgattc
    23581 gctacctcct ttccgcactc tttcccatct aaagtacagt aatcaagtcg ttgccctaaa
    23641 taagtaggat gccaaaaatt tctaaatgcc aaattctgct tacttgaagc tgttaactga
    23701 ccgcaaaaag aaaaaaataa aagtataaaa accaggaaat ttctaaaatt gctcattata
    23761 acaatccatt accaagtatt agcacatgtt agcttaggat gactgggagg cacaagagag
    23821 atttattctt cttttactcg tgctgtaatg aacttttgtc ttattgcatt ttctagatac
    23881 gactatgatt taaaagctga ccaaagacaa aacaactata tcaagataat ttttcaaagg
    23941 ctataaacaa tgttataaat agcatatgaa cagaacttat cccctggaat caaggcaaca
    24001 aatgttttta ataaaaaagt ttgtccaaat tgaatgacag aattaaaaca ctttgtaaca
    24061 aagagcatag ggcttaagca aattctaatg aaacaagctt ttcaatcatc actttaaaag
    24121 cccatatcaa aggctagtcg tttatgaaaa aatatttaac ttttatagtg tcaggcttag
    24181 ccttaattgc aataatatgg tttattcgcc acttatggat aattgggact gtcaaggttg
    24241 tgcatcctgt ttatggaaca gcagttcaag ctgtctatgc cacaggaaca gtcgaaccaa
    24301 ccgtcatgat gccaattgcc tcacaaaata cagcccgcct tgtcaagttg aatgcagatg
    24361 agggttcgga agtagtaaag ggacagatat tagccagcct ggaagatgaa cacctgcaac
    24421 ataacttaaa agaactgaaa gagcatgaaa aattagcaaa aataagatac gagcggaatg
    24481 ctcaattagt taaaaaagga gtcatctcca aagatgagta tgatcgcacc ttgtccgaat
    24541 ggcaagcagc cagtgccgca gtacgcagaa tagaagctca aatcagttat ttacaactga
    24601 tagcccctgc agatggccgt atcattaaac gtgacggtga agttggacaa ctaatcccgg
    24661 caaatcaacc tgtattttgg ctttcttgct gtgctcccct aagagtttct gctgaagtcg
    24721 atgaagaaga tattgtattg gtcagagttg ggcaaaaagt attgatccga tcggatgctt
    24781 ttccaaatca aatcttttat ggccgtgtca aaagcatcac ccctaaaggc gatccaatag
    24841 ccagaagtta cagagttcgc attagttttt cagaaaataa tcctttattg attggtatga
    24901 cagctgaaac caatattatt gtccatgaaa agaaaaatgc cttattgctg cctgtaagta
    24961 gtatttctga aaacaaagtt tggattgtac aggatgatgg gaaactctct caaaatacag
    25021 tgactattgg cgcaagagga ttaaaacaag ccgagatttt aaaaggtgtc aatattaacg
    25081 acatggttgt cttacaacct gataataagc taaaaaatgg gcaaaaagtg cgtttcattc
    25141 ttgtaaaaca ggaagaataa tgaagctatt tttaaagatt gctttaaaac atttgcttgc
    25201 acgcaaacga caaagcttgg tttctttgat gggaattgta ttgggggtag ccttcttttt
    25261 aacaatttcg tcactgatgc aggggtctga aaaagatttc atcaaacgct tggtggataa
    25321 ttcaccgcat atcacgatca tagatgaata tcgaaaccct cgtatacaac ccattcaaca
    25381 gctgcacaca aatggcgcta ttgaaattcg cagtgttaaa ccattaacag aacctcgagg
    25441 gattagaggg tatgaacaaa caataaataa tttatcgctt accatcccgg gaattgttat
    25501 ttctcctgtt ctaattggac aagccttaat tagttatgca gggaaagatt attcggtcac
    25561 tctgaatggt atgatccctg aagagataaa aaaagtttct actatcgaaa attatatgac
    25621 ttcaggttcg attaatgatc tcatagtcaa tcccgatggt attgtcttgg gaagcgagct
    25681 cttgcgtaaa ttatccctga caaaagatga taacattact gtgacagcgc ccaatggtca
    25741 aatacgcact ttcaaaattc ttggcgtatt tcgcactggc cgctcagatt ttgataccaa
    25801 tcaagcgttt attagtatta aacgtgctca agcattatta aaccgaccta accgctccaa
    25861 taacatcatt ataaaactgc ctaaccccta tcaggcctat gacattgcct ctcaaattga
    25921 aaaacagata ggctataaaa ctatttcctg gcaggaaaaa tcggaagatt tgctcaatac
    25981 actagtcatt cgaaatatca ttatgtatag cgtggttagc gctgttttaa ttgtcgctgc
    26041 atttggaatt tataatgtta tttcgactgt agtaatggaa aagcacagag acattgccat
    26101 acttaaatca atcggtttcc aaaaacatga tattcaattt atttttatca tagaaggttt
    26161 tcttctagga ctggttggat gtttgttagg actacctttg ggaagtggac tgatgtacag
    26221 tctcatgcaa gtccaattta agccgccagg aagctctgaa ttgattaata tgccactcga
    26281 ttggagttat ttacaatttg tcatcgccac agcttttgcg atgtccgcct caatcatagc
    26341 cgccgttctt cctgctcata aggcagcgct tgttcatcct gttgatatcc tgcgaggagg
    26401 gggaatgtga acaagattgt cataaaaaca aaagagcttt cgcgtcaact atcaggtgaa
    26461 gttcccgtca ctttaatcaa ggacataaat cttgaggtca gagaaggtga atttttagta
    26521 atttctggcc cctcaggttc tggcaaatcg tcattgcttt atttgctagg cttgcttgat
    26581 agaccctctc aaggaacaat ttggctgaat aatgaagaag tttcaactta tgaagaagaa
    26641 aaaatggcct ggttgcgctt gactcaaatt ggttatgtct ttcaattcca ttttctattg
    26701 cccgaattta cagcccttga gaatgtgatg ttgcctatgc aacgtctagg caaactaagt
    26761 ctttgggaaa tgaaaaaccg agctaccaag cttttaacca gcctagggtt agaggatcaa
    26821 ttatcaaaac tgcctaaaca gctgtcagga gggcaaagcc agcgcgtcgc tattgcacga
    26881 gctctggcca atgatccgat attgctcttg gcagacgagc caactggaaa tcttgatacc
    26941 gtttcaagta ctaatgtgca aaatatactc aaaaaacttg ctcatgaata cagaagatca
    27001 gtgatcatcg taacacatga tatgaatttt gctgctacag cggacagagt gattcacatt
    27061 gtcgatggca aaatacaagt gtagcgttct tgactccctg ccagtcaata cttactccat
    27121 caatttcatc ctgttctatt cttcaggact aacgacaaac tccaaggtcg aagcaaaaaa
    27181 tgtttttaat gagggagttt agataaacta agtgaccgaa ttaaaaacat tgtttaacaa
    27241 agagattggg gggttcgtaa gtcctgttct ttttaaatcg gattaggact atctataaac
    27301 caatgttcca agtcaaaata gtttgcaaga taaacaccga gggattgaat gccgaaacgt
    27361 tccgtcgcat gatgaccaca agaaaaatat tgtataccca attccatagc ctgatagaac
    27421 gttcgttcag aaacttcacc gcttaaataa gcatcaacgc caagttggta agcttcttct
    27481 ataaagtcct gtgctgctcc agtgcaccat gctatggagt gaatcatttt ttcatttccc
    27541 gcaatatgta caggataccg gccaagtttg tgctctaaaa aactggaaaa ctgttcgctg
    27601 ttcattgcct ttgataattt tccagaccaa aggagattgg cagtattgtt gatcttatgc
    27661 atctcagggg actctattaa cagcaaattc gccaggcttg cattattccc tagctcggga
    27721 tgacaatcca aaggcaaatg ataggcaaat aaattcatgt tatggccaag tagcttagca
    27781 atccttcgcc ttttcattcc ggaaataaca ggattttcac ctttccagaa ataaccatgg
    27841 tgaactaaca gtgcatcagc ttgctgttca atagcttggg aaatcacgtc ctctgatgca
    27901 ctgactgccg tacatatacg cttaatcttg tctttgcctt caacttgaat tccattaggt
    27961 gcataatcct ggtattgaga gcaattcaag aaatccagta aaaaaagact taattcatct
    28021 cttgtaatca cctgtcagaa actctcttaa tgtccgctcc caatagagat aacttttctt
    28081 ctattctctc ataacctcta tcaacatgat aaatccgctc gactactgtt tccccttcag
    28141 caaccaggcc cgcgagaatt aaactggctg atgcccttaa atcagtagcc attaccggtg
    28201 cgccagttaa tttttcaaca ccatgaacga tggctgtatt tccattaagt tggatattag
    28261 cccccattct ctgtaactct tgaacatgca taaatcggtt ttcaaaaata gtttctataa
    28321 tagttgaaga accttctgct acggaattca ttgccataaa ttgagcttgc atatccgttg
    28381 caaacgcagg ataaggggcg gttgaaatat taactgcctg aggccgcttg ttatgcatat
    28441 ttaaactgac ccaatcctca ccaatggtta attccgcgcc tgcctcttcg aatttacata
    28501 attgagataa taaagtatca gggcgtactt tcttaacagt cacttgacca cgagtaagcg
    28561 ctccagctgc caaataggtg cccgcttcta ttctatcgga catgaccgaa taagtccctc
    28621 cgtttagtga ttccacacct tctacttcaa tagttgaagt acccgcgcct cgaattttcg
    28681 ctcccatttg aatcagaaag ttagccaagt ccactacttc tggttcgcgc gcagcatttt
    28741 taatagtagt aatgccttct gccaacacag cagccattaa cacattttcg gttcctgtga
    28801 cagtaactgt gtcaaacatc aagcgtttac cttgcagacg tccctttttg caacgagcat
    28861 tgatgtagcc atttttaacc gtaatgtctg cccccatggc tcttaatgct tttaaatgca
    28921 ggtcaactgg tcttgttcca atggcgcatc caccgggcaa agaaacatct gccttaccga
    28981 agcgcgccag cattgggcct aataccaaaa tggaggcacg cattgttttg accagatcgt
    29041 aaggagcaac aaactcattg acttgactgg agtcaacttg aacattcatc ttttcatcaa
    29101 caattaaatg agctcccaat tgccctaaca gttccatcat ggtagtgatg tctttaagat
    29161 gaggtacatt agatattgtg acgtgatcac tggctagtag actggcagcc atgattggaa
    29221 gagcagcgtt ttttgctccc gaaatgacca cttcaccatg taatgcttta ccaccattaa
    29281 tcaataattt atccattttg cttcccccat tcttcttttg tccatgtctt catactgata
    29341 gcatgaagcc ttccggtggt aataaagtct ttaagctggg cataaaccca ttgctgtctt
    29401 gctactttag acttcttaac aaatatatcg ctcactacag ttacctgata ttgataacca
    29461 tcgccctcta ccttgacata aaacacatcg tcaatttcat taagtctttg ttcaatttct
    29521 tcattactta ac
//
LOCUS       DACVWI010000017        28892 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.017, whole genome shotgun sequence.
ACCESSION   DACVWI010000017 DACVWI010000000
VERSION     DACVWI010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 28892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28892
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.017"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(83..2218)
                     /gene="cadA"
                     /locus_tag="JBH85_02800"
     CDS             complement(83..2218)
                     /gene="cadA"
                     /locus_tag="JBH85_02800"
                     /EC_number="7.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cadmium-translocating P-type ATPase"
                     /protein_id="HAU0945118.1"
                     /translation="MTVPLNETKFFVAGLDCPAEEQLIRKQLQDIPEVEQLDFNFIAE
                     EVTIHHRLASSEELQKRIEALGMSVRTLESTLPIPQRKQLSLDFSWKIIGLAGFLALF
                     SELAAYFLATEQSIWTILPALLAIGLSGPSTFKKGWLALGTKTMNINSLMFIAIAGAV
                     LIGEWPEAAMVTVLFALAERIERYSLDKARLAIRSLMQIAPEVASVKQDDGQWQTLAI
                     EKVVPGAIFRVKPGERIPLDGVVISGQSTVNQAPITGESMPITKKVGDLVFAGTLNEH
                     GAFEVQVSKVSGDTLLAKIGKAIEQAQADRAPTQRFVDQFSKYYTPIMVLMAFFVALI
                     PPLAFGYPFYDSLYKSLTLLVIACPCALVISTPVTVVSGLAAAAKQGLLIKGGSYLEV
                     GHRLRLIALDKTGTLTEGKPVVTDFIAWDENRTKESLLLLAASLDSHSEHPVANALVQ
                     YWQQEQPQNALLEIEQFSALPGRGVKGLVGQELYFVGNHQLAEDNQVCNHFVEQELKR
                     LEEEGKTTVILSNATTVLAIFAVADTLRVTSQQAIAQLHERGIKTAMLTGDNAVTAQA
                     IAKKVGIDEVNANILPAEKLQAINGLLDHYNSVGMVGDGINDAPALAKATVSFAMGKG
                     TDTALETADVALMNDNLARLPFYIDLSRKTARTLYQNISLSIAIKGIFFILALVGYAT
                     LWMAVFADMGASLIVVANGLRLLYMSPDD"
     gene            complement(2295..5447)
                     /locus_tag="JBH85_02805"
     CDS             complement(2295..5447)
                     /locus_tag="JBH85_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HAU0945119.1"
                     /translation="MMLEKIIRFSLKHRWFVLLFTFIIAVLGVYNFQRLPIDAVPDIT
                     NVQVQINTQASGYSPFEVEQRITFPIELAMSGLPNLDYTRSLSRYGLSQVTVVFKDGT
                     NIYFARQLINERLQEVKDKLPPEAETTLGPISTGLGEIFMYTVTNKSNLPKSQRYNPM
                     ELRTIQDWIIKPQLRNVEGVAEVNTIGGYEKQFHITPDPTKLVRYGLSLNNVVEALER
                     NNSNVGAGYIERNGEQNLIRVPGQVKNIADIENIVVANFEGTPVRIRDVAEVALGKEL
                     RTGAATENGDEVVLGTVFMLMGENSRTVSQRVAAKMKEINKSLPEGVEAVTVYNRTLL
                     VNATINTVKKNLLEGALLVCVILFLFLGNVRAALITAMVIPLSMLLTITGMVTNQISA
                     NLMSLGALDFGLIVDGAVIIVENCIKHLGEQQHALQRILNLEERLKTIAYATTEVIRP
                     SIFGVFIITVVYLPILTLTGVEGKMFLPMAETVIIALLASMLFALTFVPAAVAIFLRG
                     HIQEKENRLVHFLSIGYAKVLRRCFHARRQVIGAAVVLVIISFMLAFRLGGEFIPSLD
                     EGDIAMHAMRIPGTSLTQAIAMQDLVEKRVRQFPEVKRVFAKLGTAEVATDPMPPNVA
                     DTFIMLKPRNEWPNPKKSKQQLVQEIEQAVKQIPGNNYEFTQPIQMRFNELISGVRSD
                     VAVKVFGDDMPTLLKTADAISAELKKVPGASDVKVEQVSGLPLLTIEINRDALARYGL
                     QIGNVQDAIVIAAGGKKGGELFEGDKRFDLIVRLPEALRTSPTVLRQVFIPLPLAKDG
                     ERHFIPLSEVAKMVRSESPNQISREVGKRRVVVTANVRNRDLSSFVNEAKQRIEQKVK
                     VPSGYWITWGGQFEQLQSASQRLQIVVPITLLGIFLLLFMSFGNARNALLVFSGIPLA
                     LTGGVFALWLRGIPLSISAGVGFIALSGVAVLNGLVMITFINKLREQKKYYLKDAVLQ
                     GSLARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPG
                     LYYIFHERRKKQGLKQEITE"
     gene            complement(5454..6710)
                     /locus_tag="JBH85_02810"
     CDS             complement(5454..6710)
                     /locus_tag="JBH85_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HAU0945120.1"
                     /translation="MNLLKPIGLSLKLAVFLLGMSSFSLWAEETTHATEENNHQETME
                     KGPHGGRLFKDGDLALEFLIFERGMPPHFRAYLYKNGEMILPQKAKLIVNLTRFSGKK
                     EQITFIPVENFLQSNQIIEEPHSFDVTIQLNSFGKPLSWHYSTYEGRVKIAPAVLKAA
                     GIETAVAQEQTIKTQLNAVGKIVTNRDTSAPIYARYSGIIKALNKNLGDEVTKGDVLA
                     TIESNESLQNYEIRSPITGTIVQKYATNGEFAQNTKPIFEVANLLTVWADFTLYRKDA
                     PLVKPGMEVIVTGDEGKPKSVSTISYISPLGVEDSQTTLARAVLNNDTRIWLPGMYVN
                     GAIVIKEKTAPVAVLLSALQQMGEQDVVFVQQGDYFEATPVNLGEKDEQWAEVISGLD
                     AGQRYVSKNSFYMKAEIGKEGASHDH"
     gene            complement(6707..7951)
                     /locus_tag="JBH85_02815"
     CDS             complement(6707..7951)
                     /locus_tag="JBH85_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0945121.1"
                     /translation="MRIYFYLVIAWMNLMTHEAMASSSFTFKDALAIAYRNNPELQAE
                     IDKAQAMRGYFVQSGLYPNPQLTLTAENFGGSGSYSSYESAETTASVTQPIPLGNRLS
                     YLKKASYADYLASLAQIQVQKAAIYMAVGGAYVDALYAGQWHQVTKKLISLNESIVKA
                     IERRVKAGAGAELDLRLAQIRLGESHIQEKKAARDALSQRAKLARLLGIGLRVDQPLV
                     DKGLPDVTLNWSVLLKTLPQSPQLIQMQQQLKAKRATITAVKKSVWPDLNIQLGARHF
                     SDDGSNAAVMSAYAQVPVFDRNQGKIMTAEAQFTQTAHEYQGTKLDIRQTAYTVFLQA
                     QQSHYEAELVTSTLLPLARKSIKLAQDGYQMGRYTYIELSTALNALYEEERHYQQAHA
                     DYHKTLIQLTGLLGLHPTKESK"
     gene            complement(8215..8877)
                     /locus_tag="JBH85_02820"
     CDS             complement(8215..8877)
                     /locus_tag="JBH85_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HAU0945122.1"
                     /translation="MDIREQIGNRITKARKELGITIKELAARTAELSPARISNWEQGT
                     RSPGPLEAKLLADQLNVSAAYLLCLTDNPQGDLIQNPENRFRHIPILSVKDAPHAKEI
                     LGEQEPFIFEKTILIDSLNPSIKSPALFATLVEDSSMQPELNPGDVVVVDGELQPSPG
                     HYVLVYLTQKKQTVLRQYGEADGCLFQLLASSELWATISIKQSNDAHLIGVVTEIRKY
                     LR"
     gene            9062..9934
                     /locus_tag="JBH85_02825"
     CDS             9062..9934
                     /locus_tag="JBH85_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vir protein"
                     /protein_id="HAU0945123.1"
                     /translation="MEFFIITHQELSALSGLPYLQQLTYLQGIKPYVDYKTGLVGIRR
                     GISYQSLSEALYIEPHSGIRSGSPSKDQLRRALKGLEKAGLIQIQSWERKLVLRCLLL
                     DRHDSAHNKAAIKAHDYSASQDPQKSLLDSTKSDTNKQYPDTTSKDEPATPQDNNNYF
                     FISFSQAFEAFWDLYPLKKEKENAFEVFKKLKPSQSLVQQIIARLTEQIQLETKKRAE
                     GVWVPAWKYPANWLTQRCWETTSTNLEAKENDYAIHETNRKYASSTNSIRTTELRESP
                     SFSDSEFQNLWKLH"
     gene            9897..10262
                     /locus_tag="JBH85_02830"
     CDS             9897..10262
                     /locus_tag="JBH85_02830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vir protein"
                     /protein_id="HAU0945124.1"
                     /translation="MTPSSKTSGNCIEQVNKLFLKFSTFYGHIWRSQFKNEAYSNFAR
                     QEWSKALEGFDVQLIDQAIDECLKNREMPPALAQFIECCKQLSARKKQCFHREPYKPC
                     DPVVANTHLKKIKAILNMK"
     gene            10282..10479
                     /locus_tag="JBH85_02835"
     CDS             10282..10479
                     /locus_tag="JBH85_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator"
                     /protein_id="HAU0945125.1"
                     /translation="MLVLTRKKGEQILIDKGQIEIHVIYQRRGVVALGIKAPAHIDVD
                     RKEIFLRKQTNPQNTNIEEPK"
     gene            10476..10910
                     /locus_tag="JBH85_02840"
     CDS             10476..10910
                     /locus_tag="JBH85_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945126.1"
                     /translation="MKISAQLSVIGVLSLAVFSSMAANVTQVNRYATVANKPLAAQIN
                     PLLAIQQVHFPHEVQTIGQAVEWWLKFSGFSLVSKEKQPESLQTVMRQALPQIDRNLG
                     PLTVKDGLEVLVGQQSFVLIEDPLLRQVNFKLKAGMRNGGKS"
     gene            10907..11515
                     /locus_tag="JBH85_02845"
     CDS             10907..11515
                     /locus_tag="JBH85_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945127.1"
                     /translation="MINRATTLKYLLAAGLGLAGVIVGINSVPTNKMNDSDVISHRLD
                     TLQAQLGALHEEVKKPVETVDLTAINQDFHKLTSLIEQLKNHNETDINRLINDNRTEL
                     TQKLDVLREMVRSLDKKQHPIKYLPINTLPFKVISIDSIQEVSVATVAYNFKTVPLEK
                     SDQLAGWTVLSIDFGLQRMELENGNKEHVVVKMNVLQGESDA"
     gene            11508..12344
                     /locus_tag="JBH85_02850"
     CDS             11508..12344
                     /locus_tag="JBH85_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945128.1"
                     /translation="MLKYSAFLIPILACHAVHAELTIPGLNQQPLNHFAIEDKTLAKT
                     GLTVNEDELTSEQDINKITLTDTQLHEAKVWGLTPDEEKRYVLLMQNKSKFYYKGLRQ
                     TPIDILGINARNETERNHFAELAARQEAQKVAKNIAWNNAFYKAYNELFVNVPVVGDF
                     DPTPYSPYAHKPVQLSQGDTLYFFIKEQDAVKTILLMLFDAIEQTPNARLHLMLLDMN
                     DTTIQIWANQHQIPQHLVNGGRITLNHGELSYQSLKIKKSLPMLLLSQNGHSSIVDLG
                     RF"
     gene            12346..12804
                     /locus_tag="JBH85_02855"
     CDS             12346..12804
                     /locus_tag="JBH85_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HAU0945129.1"
                     /translation="MKKSAILFGLLMITSCYAWQAINMEQFIKESQAQITEESLKLQE
                     KLDARLPVSSKATTGKVEKRTLTLVNFSNPVFIIGDDTDSYQWLQKNAKKLEEAQALG
                     FVANINTSEQLQALQHLTKAPLLPANVDDLMELFQETHYPLAFFGEELWQ"
     gene            12795..13493
                     /locus_tag="JBH85_02860"
     CDS             12795..13493
                     /locus_tag="JBH85_02860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HAU0945130.1"
                     /translation="MAIRTATPKPSKKTVMSFMLLVLLGWLILMGWVSSLWCCLGFEK
                     AFSSVTTLSQKQTQAITAFNGVIVANTIKSWLKTIPTQGVANKAAQTGSLIKKGLDEV
                     MPDETNDLNEIGQDFILIANQVWLLMGLTTQVMFIKLVILISAIPLFLLMVVVGLVDG
                     LNQRAIRTASLGRESSYVFHQLNRHAKRGLLLLLSLWLALPISITPAFVFVPASLLLG
                     IMVSITASRFKKYL"
     gene            13503..13826
                     /locus_tag="JBH85_02865"
     CDS             13503..13826
                     /locus_tag="JBH85_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945131.1"
                     /translation="MKRLLLLLILSLPMASHASDDALNQTLVRIINQINAIMPLLDEA
                     KTEIEPNTRIQLHIDHFEGSDGKIHAGLRTDLLSIRNALIDYINKPVIEPKTIKPLAL
                     DFIGK"
     gene            13829..14092
                     /locus_tag="JBH85_02870"
     CDS             13829..14092
                     /locus_tag="JBH85_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945132.1"
                     /translation="MSKVDIAKTFASSFKQAAGDTTASAFSGSIRFVAIMLVIIGLIW
                     CINQFMGNTEKEQEGFLILLGSRLIRIVLGFCLFILILIVKGN"
     gene            14137..14481
                     /locus_tag="JBH85_02875"
     CDS             14137..14481
                     /locus_tag="JBH85_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019234867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945133.1"
                     /translation="MGAGLITLNYAPALFADNWFPKISNADDISDGNKSMMTVTGNYV
                     RQGLGLLLFIAAVMSFIKFITTIQHGIEESKKNDGSMVAFGTFAVMGITYLAISIVAG
                     YVGYSMITKFKI"
     gene            14490..14840
                     /locus_tag="JBH85_02880"
     CDS             14490..14840
                     /locus_tag="JBH85_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HAU0945134.1"
                     /translation="MNQPSSRHLSFDYEAYKGLSLRELFWIVVVTTPLISMGCTLAGL
                     FIGYPLAFGCIGFIVGFIVSITFCPKRAAAIKAGKPHGYLMKKTVLLMAKWGLRHSPY
                     IHHQGVWQKSRLVR"
     gene            14845..15507
                     /locus_tag="JBH85_02885"
     CDS             14845..15507
                     /locus_tag="JBH85_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2895 family protein"
                     /protein_id="HAU0945135.1"
                     /translation="MFHYWKKVDSLNHINRLLLAFVSVLILIVFGLIITLAKIPNRFE
                     FWLTPSMSSNGGLVKENAIPKEYVQGFVATLLPTLNTWSQGGKKEFATNLSGFHYYFT
                     PRHQALMDKTLIAYKDAQLFNRIQVASLYRFMENEDVKVIAHNTWEVHLVLRITQRLK
                     DDSPMVIADKIVDYHVRVVKVNLSRLQNPFQLALDGYTQPETLITDLLATNTRGTQHD
                     NN"
     gene            15494..16276
                     /locus_tag="JBH85_02890"
     CDS             15494..16276
                     /locus_tag="JBH85_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945136.1"
                     /translation="MTTTKWLLTIIALISSQYALALDAEHVLWDKTPIPVELSLNEER
                     LIHFPQAISIVDNEAASQTALLKIQDALYLKGKDVFKNKRLLVQLMPQGEVIILNLSV
                     NDKTHDVKPIEVLLESKENTNSPQEVVNPLDLNAVTLTRFAIQSLYAPQRLLVIPDAV
                     GRVPMQTRKQVSLFYGASIEARPLISWHGGAFYVTAVELKNLLNKEVIVDPRQMMGNW
                     QTATFYPTNTLSPRSNKESTTVFLVSDRPFGTALSASREYVR"
     gene            16273..17586
                     /locus_tag="JBH85_02895"
     CDS             16273..17586
                     /locus_tag="JBH85_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945137.1"
                     /translation="MKKNAGLKILTVTVIAVVALIMMNSKHHDREPEVTRPDPNNLNE
                     AIASQFNDNIRDVAARLQETEKKLANLESENKQLRSKKENVQASYNPEVIKEIEQLKS
                     ELANVKTSQESQQNSQPYTVNGESTLAKEQSVKDIDALLMNRESNPNEQAYWEGLKKT
                     KQALTPKVKTAALNSKDKKSIPYYTIPAGSDLGRTTLLSALIGEVPVEGKLMQPLFPF
                     SAIINRGDLMAANGIPLPPNISGMKVNGYAIGVGSFLDNISCVRAYVTSALFVFDDGH
                     FVTVGKEQITGTAEMVNNESLGYLTTAFGNPCIKGQYFTNAPRVLTALVATDGIKGFG
                     NALSQWQMTYTANTNGATGIPTGSMGNYALGGALSQGTVKAADWLEKRIQGSFDMVFV
                     PASLGYRPTQLSFHVTQTINLDKETNGRVLDYGHLQQTTHDFSLR"
     gene            17543..17932
                     /locus_tag="JBH85_02900"
     CDS             17543..17932
                     /locus_tag="JBH85_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HAU0945138.1"
                     /translation="MVIYNKLHTILALGSILVLSACASKTVGSTAIPEGGLTVSQLYQ
                     QSLGDAMPGWSVPKRQAKIVNYSGYTRDASNEIQHLFKPLDNPQVPIYVFPHVAVIGD
                     EQLLKPGYTTAFFLYKQNQFALASEHY"
     gene            17943..20717
                     /locus_tag="JBH85_02905"
     CDS             17943..20717
                     /locus_tag="JBH85_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HAU0945139.1"
                     /translation="MKLFSQISDWLLGQPNKPALTQQNIKKRFENHNPSFANQLSMVD
                     FNDELNFFLLNDGVSIGSGFELASIPAEAASTEHLHAVFSKIRDTFATVVPLHKEDPW
                     VMQMYVNDEYTLKPVLTHIQKSIAPDIAETAFTHDYLARLDDLFCKMTRPEGLFVDPK
                     TDAPYRGRRRRIRVLFYRLYQKTQTTRELALAEHQEVMAQIESKLLSPGLQLKQLTGK
                     DYYQWLVRWFAANPEDLLARFPYPKDKKPAGYTLSQNVLFHEPQSDEQGFIFDEMVHR
                     ILYIDGLKEAPEIGLLSREKPQANPKHRYALLDKLPEGATYTIQVIFENDEALDAHLM
                     RLEKGVVGTSLKPSQVREDIKTARDELSIGNRLFWVNQSIFYRASTKDQAVLIEKELK
                     ELFIEAKMPLISSGFDIHPINSYLNALPFNFNPQYARQYLRFDRLMYASELASLLPVY
                     GRNQGARHLPCFTFFNRLGEPILFDVLHHDFISQNSHMALFANSGGGKSVATGWMINS
                     LMATKNARIILFEMGNSFDRILLHAKTHGKKTKQLLLSNKKDEAVPLNPFCEAYKAIP
                     EITDNLSAEQAILIAQKIRTIKENLEQPASSEELACNDGSRSYLAELALALRTMITEA
                     NALEEEQFTLADETLLIEVLSDAILTSFNHDIPQMLTEHIVSGFKRRLDKETVPRKKD
                     RILDMHDRLNSYVINSAKSRFFNVPTEPLGDFDIFHVDISAIKDDTGKLALVMVSLLP
                     RILAMAEATQNDNRPSFLFIDESHLQFQIPSVVAVCLLVAKVARKLGLWLVAITQNVT
                     DMNSEKATKILSLIETWILLGLDEKEISDVKRFKSLTPQQEALIRDIDSQKGLYAEAV
                     LLGSRYQGLFRVIPPRYLLALLMTEKSEKAQRHTLEKQHDVLKAAELLAEQLENKKQS
                     KNHDAYFYDD"
     gene            20692..21687
                     /locus_tag="JBH85_02910"
     CDS             20692..21687
                     /locus_tag="JBH85_02910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945140.1"
                     /translation="MMLISMMISLPIHARESIEPPSPISSFGIATKVLGKIFTNSHYK
                     VIGSCTWAVGKFPPKLVAVPAIEQFLPDLIITVANRPETNPWIEARALYENPASQALY
                     QKTYRLATGSALGFGDDAGQTSAMHINEERTRVVDVIGSPAGLYRFPYLSHKPETRFG
                     SPYYISEADAVSDRTEIAEIAYMATHPHLLFNHDIGSTTQSWGHEIPRIMRVTQPSRF
                     RASVVAALHAADIVTNKNSLHVTQSTSNSCGANCIVANVIFDGHNKNIIWQEVYPKNR
                     NINFNDTSDMGVEDDKAGNGNYVFVVWRKYRGCIANEGKLVRALSFPKVGHPQKR"
     gene            21697..23079
                     /locus_tag="JBH85_02915"
     CDS             21697..23079
                     /locus_tag="JBH85_02915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HAU0945141.1"
                     /translation="MHKLSLSLLALILPKVLLASSFMPNESDYYYKLGGSSNLYVPPV
                     NNDQTITIGGNVDGRLGFTCNGFNPVVSITNTFQDMKSSAMNIPGGIIDNLKGSVAGF
                     PLYKLQQSMPALYNVLQNTASYAQNEFSVKVKDCQDVKKTLEEGQSPMESMLSVSDSQ
                     GWLEAAKRAKTENVDVTSTAKSIAKKRDEYGLPWIGRESGNAGGTYQRPIKVINDVVI
                     AGYNILLNRKPLNNEKKPDTKTPMTHTWPTPADASKWAVKVLGDIHVSTATDADKTKH
                     DAKAGIGLSALLQSCDSSNTCTSNVSKALWNLVDKQWPLTEEKLKMVSASNLMITDEI
                     IITIQRMPREEQILTVSKLAEEIAVQNMLDKALMMRRILQAGLQVQEVQNLKPALDMV
                     KFALKKLDDDIHSLAFESEVRKKMMTETLGLLMDMRGSDIAKGLPGDDHEQSQVKNGA
                     VYAKPDSKGA"
     gene            23081..24649
                     /locus_tag="JBH85_02920"
     CDS             23081..24649
                     /locus_tag="JBH85_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG"
                     /protein_id="HAU0945142.1"
                     /translation="MVVFSPLSLYTTYLGWQQYEVIFNALWQTGLLYLGFLMVGYRFL
                     KNVLAPSGATHHAAEYALNHFLYELAITFLICGIFIYPCVPLEEKAMSFKPMCGIKKG
                     TDAKTSTLKDTGTTYDEAFADVLTPNVKMPIGFALLQNYMSGITYGLMKVTGCTDSLQ
                     AIEGDLISTYLPADVREQALNFHRQCFLEARSQYHNEPHDKTKVNDILKKYGGEEDLK
                     WVGSKVYQTLYYDKIYARQPVAGFTFNEAPNKNLEKAAERGDIDAKHLPEQGYPTCNQ
                     WWKKLKTDLVQVANNASVFDSHLNYYAVLDRVRTFKNDHPKAWGSQLSSEDYIAKMLL
                     NDSRDMQANSMKNLMGNTNGAFGGAISHGLVNIGQLTKSWTSTPLKREAIMQTLPVMQ
                     AFLYFFLIILTPVILALSGYNPKALGSICGLFIMAIFLQYLWHLVGFVERSVLDPLGQ
                     NDAIAAMRNMAVLFYFIAPMLLLKLSSHFGGEAGAALGALVNDAAQHSNKVANSGVDT
                     IKQGAKIASMGKVK"
     gene            complement(24652..24861)
                     /locus_tag="JBH85_02925"
     CDS             complement(24652..24861)
                     /locus_tag="JBH85_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945143.1"
                     /translation="MIRKNNPTQSVVLKGLKIFGKISLLALQAIVAFASDEKDKPYYV
                     AGKATELYEDGAISGSEYARHIHGD"
     gene            24875..25207
                     /locus_tag="JBH85_02930"
     CDS             24875..25207
                     /locus_tag="JBH85_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945144.1"
                     /translation="MLNKRFYKSIIGISKFILPVVLLLLLAPQLIRFSTEFSSMNDFF
                     KTHQIGFLLCHMLFYLALYWAWPKLITSMVNRRPHELDEVQIKLALQAKYYLLAALIF
                     FELLVWWR"
     gene            25211..27217
                     /gene="traD"
                     /locus_tag="JBH85_02935"
     CDS             25211..27217
                     /gene="traD"
                     /locus_tag="JBH85_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HAU0945145.1"
                     /translation="MSQYPVENLLREPTEFYTFLTCTSLAWLTVAKPHLFLLTQDMGV
                     YAALSLMTLGLVRGYQAFRIKRYHRRLIAMPYYALSTTEVPLSKKWLFLGKGFRWLPH
                     HTQRLHQIKQIRNELFMQRNTCYRKIRDYCKNHESSLLTQLFNTPSKFNPFKPDPPVG
                     GSSYLHGLGEKDSSVYIPQEVRVGHTFVVGTTRVGKTRLASILINQDIRNGDAVIVVD
                     PKGDLDLVRDMYSACKASGRLHDFRVVHLGFPELSAHYNPLKNYDQVSEVATRVTDAI
                     QAEGEGKQFAAFAWKYVNIVAICLEEMKQLISYTSIGFYINRLDQLLMAYSDAILPAH
                     DPNYHEKIEEIIANNDCRVDKYGNTPPPMSRSKAVVKYLQEHISKTITSGNVESLHDQ
                     VLIDLFDAAIMDKNYYDKITASVGPVLSEINKSNASRIFSFHKSNCEIELMSAIKNKQ
                     VIYIGLDSLTNPNIAQAVGKAFLSDLVSTAGKIYKESNANYRLNLHCDELSEIIQDSF
                     VKILNKAGGAGFQVTAYAQTKQDMEVALGSKAKAEVTEGNLNTLIMLRVKNEETANLL
                     VKVLPKIGVVEHTQVSMVNDTPHGEDGVYFNTTNEDRVQTTAVPMIDVNDIISLPKGQ
                     AFVLVNGGELYKVRIPLPVNDGLAPKDIKSAIRAINQLDDNLGD"
     gene            27219..27704
                     /locus_tag="JBH85_02940"
     CDS             27219..27704
                     /locus_tag="JBH85_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1845 domain-containing protein"
                     /protein_id="HAU0945146.1"
                     /translation="MKAEITLNLRTREVYKLFERKISGDRLFIDVILHKMNIVIGQNR
                     KPNPMALKMLSEMEQQLNSLTNAFSSEIRRFEELLAKKKEFKDKQINFVVQFHPKIIV
                     CNPLSIKLAELIEVYDQLIATLKLLRLAGCFETDQAYFIHMKQKQKLTNQSLSKIILA
                     E"
     gene            complement(27789..27998)
                     /locus_tag="JBH85_02945"
     CDS             complement(27789..27998)
                     /locus_tag="JBH85_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945147.1"
                     /translation="MKKLIFILLCFPTMIFANPAQESKNIETFKQLCKNGKDVSMREH
                     YCKLLEQQKKAEAIFKDFEKNKSST"
     gene            complement(28145..>28892)
                     /locus_tag="JBH85_02950"
     CDS             complement(28145..>28892)
                     /locus_tag="JBH85_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3644 domain-containing protein"
                     /protein_id="HAU0945148.1"
                     /translation="RKLFIKTKHGAYKYWELEKCLNHESCPLEKAIKDNLLFLIGIRH
                     EIEHQMTSKIDSFFSAKFQACCINYNSTLKNLFGNDYGLEKITPIALQLFSFGESQVD
                     ELIEKKELPKNLLDFISDYETDCDSLTDSRYSYRVFYMRINTNHENQADRAYRFIDEK
                     SASGMAIDNILFKYKQYKKLTQNEVIDIIKKQGKNFDKTAHQNLWKRLWKDASTRNIQ
                     AKQYGELVVNNQWLWYQETWIPKILELLSE"
BASE COUNT         8913 a         6119 c         5474 g         8386 t
ORIGIN      
        1 aaataccaaa attgactcat ttttcatcct ttactttaaa aaatatctta gacttacgtt
       61 attttattaa ctactttctt gattaatcat ctggggacat atacaacaat cgcaatccat
      121 tagccactac gattaaactc gctcccatgt ctgcaaaaac tgccatccat aacgttgcat
      181 accctacaag agccaaaata aagaaaatgc ctttaatcgc aatagataaa ctgatgtttt
      241 gataaagagt acgtgctgtc ttacgactta aatcaatata aaaggggagt cttgctagat
      301 tgtcgttcat tagggcaacg tctgcagttt ctaaggcagt atctgttcct ttccccatcg
      361 caaaactcac ggtagctttt gccaatgcag gggcatcatt aattccatct cctaccatcc
      421 caacgctatt atagtgatct aaaagaccat taatcgcttg cagtttttcc gcaggtaata
      481 tatttgcatt tacttcatca atacctactt ttttagcaat agcctgagcc gttaccgcat
      541 tgtctcccgt taacatcgcg gtttttatac cccgttcatg tagttgtgca atcgcctgtt
      601 ggcttgtaac acgtaaagta tcagctactg caaaaatagc caaaacagtc gtagcattac
      661 ttaatattac ggtcgtttta ccttcttcct ccaagcgctt cagctcttgt tcgacaaaat
      721 gattgcatac ctgattgtct tcagctaact gatgattgcc tacaaaatag agttcttgac
      781 ccactaatcc ctttactcct cgtccaggaa gtgctgaaaa ttgctcaatt tcaagtaaag
      841 cgttttgagg ttgttcctgt tgccagtact gtactaaggc attagcgact ggatgctctg
      901 agtgactatc aaggcttgca gctaacaata acaaactctc cttagttcga ttttcatccc
      961 aagctatgaa gtcagttaca actggctttc cttccgttaa agtacctgtc ttatctaaag
     1021 caattaacct cagtcgatga ccaacctcta agtagcttcc tcctttaata agaagccctt
     1081 gttttgctgc cgctgcaagg ccacttacaa cagtcacggg tgttgaaatc actaaagcgc
     1141 aagggcaagc aataactaat aaagtcagtg acttataaag agaatcataa aaaggataac
     1201 caaatgctaa aggtggaatt aatgcaacaa aaaaagccat caataccata attggagtat
     1261 aatatttaga aaactgatca acaaatcgtt gtgttggagc tcgatccgct tgcgcttgct
     1321 ctatcgcttt accaatttta gcaagcaatg tatcgcctga cactttactg acctgcactt
     1381 caaacgcgcc gtgctcattt aatgttcctg caaaaaccaa atcacccact ttttttgtta
     1441 ttggcattga ttcaccagta atcggcgctt gattgaccgt gctctgacct gaaataacca
     1501 cgccatccag gggaatacgc tctccaggtt ttactctaaa aatagcacca ggcaccactt
     1561 tttcaatggc caaggtttgc cattgaccat cgtcctgttt cactgaagcc acctcagggg
     1621 caatttgcat taagcttcga atcgcaagac gtgctttatc taaggagtag cgctcgatac
     1681 gttcggccaa tgcaaataaa acagtcacca ttgccgcttc aggccactct ccaataagaa
     1741 cagcccctgc tatcgcaatg aacatcaagc tattgatatt cattgtttta gtccctaagg
     1801 caagccaccc ttttttaaag gtagaaggcc cactaagacc aatagccaac aaagctggaa
     1861 gaatagtcca aatggattgt tccgtagcca aaaaataagc tgccagctca gaaaataggg
     1921 caagaaaacc tgctagtcca ataattttcc aggaaaaatc caacgataat tgttttcttt
     1981 gtggtatagg taaagtgctt tccagcgttc gaacactcat tcccaacgcc tcaatgcgtt
     2041 tttgcaattc ttcacttgaa gccaaccggt gatgaatagt aacttcttca gcaataaaat
     2101 taaaatccaa ctgctccact tcaggaatat cctgtaactg ctttctgatt agttgctctt
     2161 ccgctggaca atcaagtcct gcaacaaaaa atttggtttc atttaaaggt actgtcattt
     2221 ggtttttccg cattgtccgt aaaatataac ctttgtaatg aataaagcat cacaagaaca
     2281 tcgtctgata cacatcactc tgtgatctct tgcttaagac cttgcttctt gcgccgctca
     2341 tgaaatatat aatacaaccc tggcaatacc agtaatgtca aaaacgtgga agaaataatt
     2401 ccaccaataa ccacagtggc cagaggtctt tgtacctcag agcctgtacc cgtagctaat
     2461 gccatgggga caaagcctaa tgatgcgacc agtgcagtca ttaataccgg acgaagacga
     2521 gctagagatc cttgcaacac cgcatccttt aaatagtatt tcttctgttc gcgtagctta
     2581 ttgatgaacg taatcatcac caaaccattt aaaacagcga ctcctgacaa agcaataaat
     2641 cctactcctg ctgaaattga aagtggaatg cctcgcagcc ataaagcaaa aacgcctcca
     2701 gtcaaagcca agggaatacc agaaaatact agcaatgcat tacgtgcgtt cccaaaactc
     2761 ataaataaga gtagaaaaat acccaataaa gttatgggca ccacgatttg tagtcgttgc
     2821 gatgccgatt gcagctgctc aaattgacca ccccaggtta tccaataacc actaggtacc
     2881 ttaacctttt gctcaatacg ctgctttgct tcattaacaa aagagcttaa atccctgttc
     2941 ctcacatttg cagtgactac tacacgacgt ttacccactt cacgactgat ttgattggga
     3001 ctttcactgc gtaccatttt agcaacttca ctcaatggaa taaaatgacg ctctccgtct
     3061 tttgcaagag gtaacggaat aaacacttgc cttaaaacag tagggcttgt acgtaatgcc
     3121 tcaggcaggc gcacgattaa atcaaatcgc ttgtcacctt caaacaattc tccacctttt
     3181 ttcccccctg cagcaatgac tatagcgtct tggacattac caatttgtag accgtaacga
     3241 gccaatgcat cacgattgat ttctatggtc agaagcggca acccactgac ttgttcgact
     3301 ttcacatcag aagcacccgg tactttttta agctctgcac taattgcgtc cgcagtcttt
     3361 aataaagtag gcatatcatc accgaacact ttcactgcga catcgcttcg aactcctgaa
     3421 attaattcat taaagcgcat ttgaatcggc tgggtaaatt cataattatt tcctggaatt
     3481 tgtttcacag cctgctcaat ttcttgtaca agttgttgtt tgcttttctt aggattaggc
     3541 cattcgttac gtggcttgag cataataaat gtatcagcca cattaggcgg catgggatca
     3601 gtagcaactt ctgcggtccc caatttggca aacacacgtt ttacttcagg aaattgccgc
     3661 acgcgttttt caactaaatc ttgcatagca atggcctgag ttaaactggt tccaggaata
     3721 cgcatcgcat gcatagcaat atccccctca tcaagactgg gaataaattc cccacctaag
     3781 cgaaacgcaa gcataaaact gataataacc agaacaactg ctgctccaat cacttgccta
     3841 cgtgcatgaa agcaccgtct taatactttg gcataaccta tagaaaggaa gtgaaccagt
     3901 cgattttctt tctcttgtat gtgtcctcgt aaaaaaatag cgaccgctgc cggtacaaac
     3961 gttaaggcaa acagcatgga tgccaaaagt gcaataatga cggtttctgc catgggcaaa
     4021 aacatttttc cttcaacacc tgttaaggtt aaaataggca aataaaccac agtaataata
     4081 aaaacaccaa aaatactagg tcgaatcact tcagtggtag cataagcaat ggtctttaaa
     4141 cgctcttcaa ggtttaaaat tcgctgtaga gcatgctgtt gctctcctaa atgcttgatg
     4201 caattttcaa caatgataac cgctccatcg acaatcaaac caaaatcaag tgcacctaaa
     4261 ctcattaagt tggcactgat ttgattagtc accataccag tgatagtcag cagcatggat
     4321 aatggaatga ccatcgccgt aatgagcgcg gcgcgaacgt ttcccagaaa gagaaataag
     4381 ataacgcata ccaataaagc accctcaagt aaattcttct ttacagtatt aatggtggca
     4441 ttaacaagca atgtccggtt atacaccgtg accgcttcga ctccctcggg taatgattta
     4501 ttaatttcct tcatttttgc agcaacgcgt tgagacacgg tacgactgtt ctcacccatt
     4561 agcataaata ccgttcctaa aacgacctca tcaccatttt ccgttgcagc acccgttctt
     4621 agctccttgc caagagccac ctctgctaca tcacgaattc gaacaggagt tccttcaaag
     4681 tttgccacca caatgttttc tatgtcggcg atattcttta cttgaccggg tacacgaata
     4741 agattttgct caccgtttcg ttcaatataa cctgctccaa cattggaatt attgcgttca
     4801 agcgcttcaa cgacattatt taagctcaga ccataacgca ctaatttggt tggatcaggg
     4861 gtaatatgaa attgtttttc atatccacca atggtattaa cttctgccac cccttctaca
     4921 ttgcgtaatt ggggtttaat tatccaatct tgaatagtgc gtaactccat tgggttgtag
     4981 cgttggcttt taggtaggtt tgatttgtta gtcacggtat acataaaaat ctcaccaagt
     5041 cctgttgaaa tgggacctaa tgttgtttct gcttctggtg gtaatttatc tttgacttcc
     5101 tgtaagcgtt cgttaataag ctgtcgtgca aaataaatat tcgttccgtc tttaaaaacc
     5161 acagtcactt gcgataaacc atagcgcgat aaagaacggg tatagtcaag attaggcaga
     5221 ccactcatgg ccaattcaat aggaaacgta atacgttgct ccacctcaaa aggcgagtaa
     5281 cctgaggctt gtgtgttgat ttgtacttgc acattggtga tatcagggac tgcatcaatg
     5341 ggaaggcgtt gaaaattgta aacaccaagc actgcgataa taaatgtaaa caaaagaaca
     5401 aaccaacggt gttttaaaga aaaacgtatg attttttcaa gcatcactat tccttagtgg
     5461 tcatggcttg cgccttcttt gcctatttct gctttcatat aaaaactgtt tttgctcaca
     5521 tagcgctgcc ccgcatccaa tcccgaaatc acttctgccc actgctcgtc tttttcaccc
     5581 agattaactg gagtggcttc aaaataatcg ccttgctgaa caaaaaccac gtcttgttca
     5641 cccatttgtt ggagtgccga aagaagtact gcaactgggg ctgttttctc tttaatcacg
     5701 atggcaccat tcacatacat accaggaagc cagatgcgag tgtcattatt aagaacagca
     5761 cgtgccaatg tggtttgact gtcctcaacc cctaaaggtg aaatgtagct aatggtactt
     5821 actgatttgg gctttccttc atccccagtc acaatgactt ccatacctgg cttcactaaa
     5881 ggcgcatcct tgcgatataa ggtaaaatca gcccaaacag taagtaaatt ggctacctca
     5941 aaaataggtt tggtgttttg agcaaactca ccattggttg catatttttg tactatcgtt
     6001 cccgttatgg gtgaccttat ttcgtaattt tgcaaactct cattactttc aatcgttgcc
     6061 aacacatccc cttttgtcac ttcatcgcct aaatttttat tcaatgcttt aataattccc
     6121 gaataacgtg cataaatagg tgctgaagta tcacgattgg tgacgatttt acctacagca
     6181 tttaattgcg tttttatcgt ttgttcttgg gcaactgctg tttctatccc cgctgcttta
     6241 agaacagcag gagcaatttt tactcgacct tcatacgtgg agtaatgcca actcaatggc
     6301 tttccaaaac tatttaattg aattgttaca tcaaaagaat gaggttcttc aatgatctgg
     6361 ttgctttgca aaaaattttc cacaggaata aaagtaatct gctctttttt tccactaaat
     6421 cgagtgagat ttacgattaa ttttgccttt tggggcaaaa tcatttcccc atttttataa
     6481 agataagctc taaagtgagg tggcatacca cgctcaaaaa ttaaaaactc taaggccaaa
     6541 tcgccatctt taaacaaacg gcctccatga ggtccttttt ccatggtctc ttgatgatta
     6601 ttttcttctg tagcatgagt tgtttcttcc gcccaaagcg aaaaagagct cattcctaac
     6661 aggaacacag caagttttag ggataaaccg attggtttta atagattcat ttactctcct
     6721 tggtaggatg aagacctaaa agccctgtaa gttgaattaa tgttttatga taatctgcat
     6781 gtgcctgttg atagtgtcgt tcctcttcat acaaagcatt taaggctgta gataattcaa
     6841 tgtaggtata gcgtcccatt tgatagccat cttgagcgag ttttattgat ttacgagcaa
     6901 gtggtaacaa agtactggtt actaattctg cttcataatg actttgttgg gcttgtaaaa
     6961 atacagtata tgctgtttga cgtatatcga gctttgttcc ctggtattca tgcgcagttt
     7021 gcgtgaattg cgcttccgct gtcattattt ttccttgatt gcgatcaaaa acaggaactt
     7081 gtgcataagc cgacatcact gcagcattgc ttccatcatc agaaaaatgg cgagcgccta
     7141 attgaatgtt taaatccggc caaacggatt ttttaactgc tgtaatggtt gctcgtttgg
     7201 cttttagttg ttgttgcatt tgtatcaatt gcgggctttg aggtaatgtt tttaaaagca
     7261 ctgaccaatt taatgtaaca tcaggtagcc ctttatctac taatggttga tccaccctta
     7321 atccgatacc taataaacga gccaatttag cacgttgtga cagtgcatca cgtgccgctt
     7381 ttttttcttg aatgtgcgat tcacccaatc gaatttgagc taaacgtaaa tccaattcag
     7441 ctcccgcacc cgctttaaca cgccgctcaa ttgctttaac gatactctca ttgagtgaaa
     7501 taagcttttt agttacctgg tgccattgtc cggcatacaa tgcatcgaca tatgcgccac
     7561 caacagccat ataaatcgct gctttttgga cttgaatttg tgctaatgag gctaaataat
     7621 ctgcatagct ggcttttttc aaataagata aacgattacc taaaggaata ggctgtgtca
     7681 ctgatgcggt agtttctgca gattcgtaac tggaataact gccagatccg ccaaaattct
     7741 cggcagttaa ggtaagttgt ggattagggt aaagcccgct ttgtacaaaa tacccacgca
     7801 tggcctgcgc tttatctatt tcagcttgta attccggatt attccgatat gcaattgcca
     7861 aagcatcttt gaaagtaaat gaggatgatg ccatagcttc atgagtcatg aggttcatcc
     7921 atgcaataac taaataaaaa taaatacgca tcccttaact tacccttaac ttgcaaatat
     7981 acttttttag tttaattgta tttgagtgtt tttacacgtt tatattgtga taacttattg
     8041 ataaatcttc attcaattag attcgaagca tttgctcagt cgaataaaac taattttatg
     8101 aatgacacct aaatttatgc tttgaataac aaggccaaca agagcgataa cacaaaaaac
     8161 aatacccata tagagcaact aacatatcct ttttcatagc tatagcctaa acatctatcg
     8221 taagtatttt ctgatttcag taaccacacc aatcagatga gcatcattag attgcttgat
     8281 acttatagtg gcccataact cactacttgc taacaactga aataaacaac catctgcttc
     8341 tccgtattga cgtaacaccg tctgcttttt ttgtgttaaa taaactagaa cataatggcc
     8401 tggactaggt tgcaattcac catcgacaac tactacatct ccagggttaa gctctggctg
     8461 catgctgcta tcttctacta aggtggcaaa taacgctgga cttttaatcg aaggatttaa
     8521 cgaatcaatc aaaattgttt tttcaaaaat aaagggttct tgttccccta aaatttcttt
     8581 tgcatgtggc gcgtccttca cactcaatat aggaatgtgt cgaaatctat tttcaggatt
     8641 ctgaatcaaa tcgccttgcg gattatccgt taagcataac aaataagcag cagatacatt
     8701 taactgatct gcaagcaatt tagcttccaa cggcccaggg cttcgcgttc cctgctccca
     8761 attactaatt cttgcaggag atagttctgc tgttcttgct gctaattctt taatcgtaat
     8821 acccagttct ttacgggctt tggtaatacg attacctatt tgctctctaa tatccattgt
     8881 gatccttcaa aaaaatgaga catacccatt gacaaaaaca cgtttcgttt tatattataa
     8941 gctaattaaa acgttttgtg ttttataaat tagtgatact taccatattt aatcataatt
     9001 ttatttaaaa atcacatcct gttttatttt tcatttttat tcattgataa taggtcatgc
     9061 tatggaattt tttattatca cccatcagga actttctgca cttagtggtt taccatatct
     9121 acaacaatta acttatcttc aaggcattaa accctacgtt gattacaaaa cagggttagt
     9181 cggtattcgt cgtggtatta gttatcagtc attaagtgaa gcgctttaca tagaacctca
     9241 ttcaggtatt agaagcggta gcccaagtaa agatcaattg cgacgtgctt tgaaagggct
     9301 tgagaaggct ggtttaattc aaattcagtc ttgggaaagg aagcttgttt tacgttgttt
     9361 attactggac aggcatgatt ctgctcataa taaagccgcc ataaaggcac atgactatag
     9421 cgcatctcaa gacccacaaa aaagtctatt agattcaaca aaatccgata cgaataaaca
     9481 atatcccgac acaacctcaa aggatgaacc cgccactcct caagataata ataattattt
     9541 ttttatttct ttctcacaag cctttgaggc cttctgggat ctgtaccctc tgaaaaaaga
     9601 aaaagaaaac gcttttgagg tatttaaaaa actaaagccc tctcagagct tagtccagca
     9661 aatcattgcc cgcttaactg aacaaattca acttgagaca aaaaaacgcg ccgaaggcgt
     9721 ttgggttccg gcctggaagt atccagcaaa ttggttaaca cagcgatgct gggaaacaac
     9781 atcaacaaac cttgaagcca aggagaatga ctatgcaatc catgaaacaa atcgtaaata
     9841 cgcatcatct acaaacagca tcaggactac agagttgcgt gaaagcccaa gtttcagtga
     9901 ctccgagttc caaaacctct ggaaattgca ttgagcaagt caacaaactg tttctgaaat
     9961 tttcaacctt ctatggacat atatggcgta gccaattcaa gaatgaagct tattcaaatt
    10021 ttgcacgtca agaatggtca aaagcactag aaggattcga tgtgcagtta attgatcaag
    10081 caattgatga gtgtcttaaa aaccgcgaaa tgccacctgc gctggcgcaa tttattgagt
    10141 gttgcaagca actatcagcc agaaaaaaac agtgctttca cagagaacct tacaaacctt
    10201 gtgaccctgt tgttgccaac acacacctga aaaaaataaa agcaatctta aacatgaaat
    10261 aaaaataacc ggagaaaaat aatgttggta ctgacaagaa aaaagggtga gcaaatatta
    10321 attgataaag ggcagattga aatacacgtc atttatcaac gaagaggcgt ggtcgcttta
    10381 ggtattaaag ctccagctca tattgatgtt gatagaaaag aaattttttt aagaaagcaa
    10441 accaatcctc aaaacaccaa tatagaggaa ccaaaatgaa aataagtgct caactctctg
    10501 taattggcgt acttagcctg gcagtctttt cttctatggc agctaatgtt actcaagtaa
    10561 accgctacgc gactgttgct aacaaaccat tagcagccca gatcaatcca ctccttgcca
    10621 ttcaacaagt ccattttcct catgaagtac aaaccatagg tcaggcagtt gaatggtggt
    10681 tgaagttttc aggattttct ctggtatcaa aagaaaaaca acctgaaagc ctgcaaactg
    10741 tcatgcgcca agccttacct cagattgaca gaaacctcgg ccctttgact gttaaggacg
    10801 gtcttgaagt ccttgttggc caacaatctt ttgtcttgat cgaagatccc ttattgcggc
    10861 aggtaaattt caaattaaaa gctggaatgc gaaatggggg taaatcatga tcaatcgagc
    10921 aacaacctta aagtatttat tggcagcagg tttaggcctg gcaggtgtca ttgttggcat
    10981 taactctgtt ccaacaaata aaatgaatga ttcagatgtt atttcacatc gtcttgatac
    11041 gttgcaagca cagcttggtg ctttgcacga ggaagttaaa aagcccgttg agacagtaga
    11101 tttaaccgcg attaaccagg attttcataa actgacctcc ttgattgaac agctcaaaaa
    11161 tcataatgaa acagatatta atcgcctgat caatgataat cgtactgaat taacacaaaa
    11221 gttggatgtc ttgcgtgaaa tggtgaggtc tttggataaa aagcagcatc ctattaaata
    11281 cctgcccatt aacaccttac cgtttaaagt catcagtata gacagcattc aggaagtcag
    11341 tgtggctaca gtggcttata actttaagac agtgcctttg gaaaaaagcg accaattagc
    11401 tggctggaca gtattaagta ttgacttcgg tctacaacgc atggaattgg aaaacggtaa
    11461 taaagagcat gttgtggtga agatgaatgt attgcagggg gaatctgatg cttaagtatt
    11521 ctgctttcct gattccaata ttagcctgtc atgcagtaca tgctgaactg actattccag
    11581 gattaaatca acagccctta aatcactttg ccattgaaga taaaacattg gcaaaaacag
    11641 ggttaacggt taatgaagac gagctgacct cagagcaaga catcaataaa attacactga
    11701 ccgataccca actgcatgaa gctaaagtgt ggggattaac gcctgacgaa gagaaacgtt
    11761 atgtcctact catgcaaaat aaaagtaaat tctactacaa aggcttaaga caaacaccta
    11821 ttgatattct gggtattaat gccagaaatg aaaccgaacg caaccatttt gcagaattag
    11881 cagcaagaca ggaagcccag aaagtagcta aaaatattgc ctggaacaat gctttttaca
    11941 aggcctataa cgagttgttt gttaatgtcc ctgtggttgg tgattttgac ccaactcctt
    12001 attcacccta tgcccacaaa ccagtgcaat taagccaggg cgatacgctg tatttcttta
    12061 tcaaagaaca agatgctgta aaaaccattt tgctgatgct ctttgatgcc atagagcaaa
    12121 caccaaatgc acggttgcat ctgatgttac tggacatgaa tgatacgacc atccaaatct
    12181 gggcaaatca acatcaaata ccacaacatc ttgtaaatgg tggccgtatt acccttaacc
    12241 acggcgaact aagctaccaa tctctcaaga tcaaaaagtc actaccgatg ttgctactct
    12301 cccaaaacgg tcattccagc attgtggatt tggggaggtt ttaatatgaa aaagtcagcc
    12361 atactctttg gattgttgat gattacctcc tgctatgcct ggcaagccat taacatggag
    12421 caattcatta aagaaagcca agctcagatc accgaagaat ctttaaaact acaagaaaag
    12481 ttggatgcaa gactgcccgt atcaagtaaa gccactactg gcaaagtaga aaagcgaaca
    12541 ctcacactcg ttaatttctc aaaccctgtg ttcatcattg gggatgatac ggactcttac
    12601 caatggttgc aaaaaaacgc gaaaaagctg gaagaagcac aagccttggg ctttgtcgcc
    12661 aacattaata ccagtgaaca acttcaagca ttacaacacc tcaccaaagc gcctttatta
    12721 ccagctaacg ttgatgactt aatggaactc tttcaagaaa cccattaccc gctcgctttc
    12781 tttggggaag aattatggca ataaggactg caacgcccaa accctccaaa aaaacggtca
    12841 tgagttttat gctgcttgtt ttattgggct ggttaatcct tatgggttgg gtatccagtc
    12901 tttggtgctg tttaggattt gaaaaagcgt ttagttcagt caccacactt tcccaaaaac
    12961 aaacgcaagc aattaccgca tttaacggag tgatagttgc taacactatt aaatcctggt
    13021 taaaaaccat tcctactcaa ggtgttgcca acaaagcggc gcaaacaggc tccctgatta
    13081 aaaaagggct ggatgaggtg atgcctgatg aaaccaacga tttaaatgaa ataggacaag
    13141 attttatcct aattgccaat caagtttggt tactgatggg attaactact caagtaatgt
    13201 tcatcaaact ggttattctg atttcggcta tccctctgtt tttattaatg gtcgtggttg
    13261 gactggttga tgggttaaat caacgcgcta tccgcaccgc atcattaggc cgtgaatcat
    13321 cctatgtctt tcaccaactc aatcgccacg ccaagcgagg ccttttattg ttattaagct
    13381 tatggcttgc gctgcccata agcatcacgc ctgcctttgt ttttgtacct gcaagcctat
    13441 tgctaggcat catggtttca atcaccgcca gtcgatttaa aaaatatttg taggagaaaa
    13501 acatgaaacg attattgtta ttactcatat taagtctgcc aatggcctct catgcgagtg
    13561 acgatgcact caaccaaacg ctagtcagaa taattaatca gattaatgcc atcatgcctt
    13621 tgcttgatga agcgaaaacg gaaattgaac ccaatacccg catccaattg catatagatc
    13681 attttgaagg ctctgatgga aagatacacg caggccttcg taccgattta ctgtccattc
    13741 gtaatgcgct gattgattac atcaataaac cagtcattga acctaaaacc atcaagccgt
    13801 tagcgttgga ttttatagga aagtgactat gagcaaagta gatattgcca aaacttttgc
    13861 ttccagtttt aaacaagctg cgggcgatac aactgcaagt gccttttccg gcagcatccg
    13921 atttgtcgcc atcatgctag tcattattgg ccttatttgg tgcattaatc aattcatggg
    13981 caatacagaa aaagaacaag aaggatttct tatccttcta ggttcccgct taatccgcat
    14041 tgttcttggg ttttgtttat tcattctaat tttaatcgtt aaggggaatt aatcatgaaa
    14101 aagtcaattg caggtgtcaa acaatggggg caacgaatgg gtgcaggact cattacttta
    14161 aattatgcgc ctgcattgtt tgccgacaac tggtttccaa aaatctctaa tgccgatgac
    14221 atcagtgatg gtaataaaag catgatgaca gttacaggta actatgttcg tcaaggcctg
    14281 ggattattgc tttttattgc tgcggtcatg agttttatta aattcatcac caccattcag
    14341 cacggcattg aagaatccaa gaaaaatgac ggttctatgg tggcctttgg tacgtttgcg
    14401 gtgatgggga ttacttatct tgccatcagt attgtagcag gttatgtcgg ctacagcatg
    14461 attaccaaat tcaagattta ggggaactca tgaatcaacc atcctcacgt catctgtcgt
    14521 ttgattatga agcctataaa gggttaagcc taagagagct tttctggata gtggtggtaa
    14581 caacaccact aattagcatg ggatgtactt tggcaggact ttttattggc tatccgttgg
    14641 ccttcggatg tattggtttc attgttggtt ttattgtgtc cattactttt tgccctaaac
    14701 gggcagctgc cattaaggct ggtaaaccgc atggctattt aatgaaaaaa accgtgttgt
    14761 tgatggcaaa gtgggggtta agacactcgc cctacattca ccatcaaggt gtctggcaaa
    14821 aatcaagact cgtgaggtag ttctatgttt cattactgga aaaaagtgga cagtttaaat
    14881 catatcaatc ggttgttatt agcctttgta tccgtactca ttttgattgt atttggcctg
    14941 atcattacgc tggctaaaat acccaatcgt tttgaatttt ggctaacacc ttctatgagt
    15001 agtaatggtg gattagtcaa ggaaaacgcc atacccaaag agtacgttca gggttttgtt
    15061 gccacactgc tacccacctt aaacacctgg tcacaaggtg gtaaaaaaga atttgctact
    15121 aatctttcag gctttcatta ctacttcact ccacgacatc aggcattaat ggataaaacc
    15181 ttgatagctt ataaagatgc tcaacttttt aatcgcatac aagtagcaag tctttatcgg
    15241 tttatggaaa acgaagatgt caaagtaatc gctcataaca catgggaagt tcatctggtt
    15301 ttacgcatta cccaacgctt aaaagacgat agccccatgg tcattgcaga caagattgtg
    15361 gactaccatg tgcgtgtggt caaggtcaat ctctctcgct tacaaaatcc ttttcaactg
    15421 gcattggatg gttataccca accagaaaca ctaatcaccg atttattggc aaccaataca
    15481 agaggtacac aacatgacaa caactaaatg gttactcacc ataattgcct taattagcag
    15541 ccaatacgcg ctagctctgg atgcagaaca tgtcttgtgg gataaaacac ccatccctgt
    15601 cgaactatcc ttgaatgagg aaaggctcat ccattttcct caagccatta gtattgtaga
    15661 taatgaagca gcctctcaaa ccgcgctttt gaaaattcag gatgctttgt atctgaaagg
    15721 caaggacgtt tttaaaaaca aaaggctctt ggtgcagctc atgcctcaag gtgaggtcat
    15781 tatcttaaac ttaagcgtta atgataaaac tcatgatgta aaaccaatag aagtactttt
    15841 ggaatccaaa gaaaatacca actcccctca agaagtggtt aacccgctgg atttaaatgc
    15901 agtaacactg acgcgctttg ccatccaatc tttgtatgcc ccacaaagac tgttggttat
    15961 tcctgatgct gtggggcgtg ttcctatgca aacccgaaaa caagtaagcc ttttttatgg
    16021 tgccagcatc gaagcaagac cattgatttc atggcatggt ggtgcatttt atgtaactgc
    16081 ggtggaattg aaaaacctgc tgaacaagga agtaattgtt gatcctcgcc aaatgatggg
    16141 taactggcaa accgctacct tttaccccac caacacttta tcacctcgta gtaataaaga
    16201 gtccactacg gtatttctgg tatcagacag gccctttggt acagcgcttt ccgcaagtcg
    16261 ggagtacgta cgatgaaaaa aaatgctgga ctcaaaatat taaccgtaac agtgatcgct
    16321 gttgttgcac tcattatgat gaacagcaaa catcatgacc gtgaacccga agtcactcgc
    16381 cccgatccca ataatctgaa tgaagccatt gccagccagt ttaatgacaa catccgtgat
    16441 gttgctgcaa gactacagga aaccgaaaag aaacttgcca atcttgagtc ggaaaacaag
    16501 caactcagaa gcaaaaaaga aaatgtgcag gcttcttata atcctgaggt gattaaagaa
    16561 atagaacaac taaaatccga attggccaat gtcaaaacca gtcaggaatc ccaacaaaac
    16621 tctcaaccct acaccgtcaa tggagaatcg actcttgcta aagaacaaag tgttaaggac
    16681 atcgatgctt tattaatgaa tcgtgaaagt aatcctaatg aacaagccta ttgggaggga
    16741 ttaaagaaaa caaagcaagc attaacccca aaagttaaaa cagcggcttt aaacagtaaa
    16801 gataaaaaaa gtattcccta ttacaccatt ccagctggct ctgatttagg cagaactacc
    16861 ttgttatcgg cactgattgg tgaggtgcca gttgaaggca aactcatgca gcctttattt
    16921 cccttctcag ccattattaa tcgtggtgat ttaatggctg ctaatggtat ccctttgcct
    16981 cccaatattt caggtatgaa agttaatggt tatgcaatcg gtgttggttc ttttttggat
    17041 aacatcagct gtgttagagc ctatgttact tctgctttgt ttgtttttga tgacggccat
    17101 tttgtgactg tgggtaaaga gcaaataacc ggaacggctg aaatggtcaa taatgaaagt
    17161 ttaggttatc tcaccaccgc ttttggtaat ccttgtatta aaggtcagta tttcaccaat
    17221 gctcccagag tacttacggc acttgtggcc acagatggaa tcaaagggtt tggtaatgca
    17281 ctttcccaat ggcaaatgac ctatacagcc aataccaatg gcgcgacagg tatacctacc
    17341 ggctctatgg gcaattatgc cttgggtggc gcgctttccc aaggaacagt caaagccgct
    17401 gactggctcg aaaaacgcat tcaaggcagt ttcgacatgg tttttgttcc ggcatctctg
    17461 ggatacagac cgacacagct ttcatttcac gtcacacaaa ccatcaacct tgataaagaa
    17521 accaatggga gggtattgga ttatggtcat ttacaacaaa ctacacacga ttttagcctt
    17581 aggtagcatc ttggtgctta gtgcttgcgc ctcaaagaca gttggctcca cggctattcc
    17641 cgaaggagga ttgactgtta gccaacttta tcagcaaagc ttaggtgatg ccatgcctgg
    17701 ctggtctgta cctaaaagac aggcgaagat cgtcaattat tcagggtata cacgagatgc
    17761 ttccaacgag atccaacatt tgttcaagcc tttggataac ccacaagttc cgatttatgt
    17821 gtttcctcat gttgctgtca ttggtgatga gcaattgtta aaaccaggct ataccacagc
    17881 cttttttctc tacaaacaaa atcaatttgc actagcttcc gaacactatt aagaggtaaa
    17941 taatgaaatt attcagccaa ataagtgact ggctgttagg acaacccaat aaaccagcat
    18001 taacgcaaca aaacataaaa aaaagatttg agaatcacaa tccttccttt gccaatcaat
    18061 tgtctatggt ggatttcaat gatgagctca atttcttttt actcaatgat ggagtcagca
    18121 ttggttcagg ttttgaatta gcgtccattc cagcggaggc cgcctctact gaacatttac
    18181 acgcagtgtt tagcaaaatt cgagatactt ttgccacggt agtccctttg cacaaagaag
    18241 atccctgggt gatgcaaatg tatgtcaatg acgaatacac tttgaaacct gttctcactc
    18301 atattcaaaa aagcattgca ccagacattg ctgaaacagc ctttactcat gactatttgg
    18361 caaggttgga tgatctgttt tgtaagatga caagacccga aggattgttt gttgatccca
    18421 aaaccgatgc accttatcgc ggcagacgaa gacgaatcag ggttttattt tatcgcctct
    18481 atcaaaaaac gcaaaccacc agagagctgg cacttgccga gcatcaggaa gtcatggctc
    18541 aaattgaaag caaattacta tcacctggtc ttcaactaaa acaactaacc ggtaaagatt
    18601 attatcagtg gttagtgcgt tggtttgcag ccaaccccga agatctatta gctcgctttc
    18661 cttatcctaa agacaaaaaa cccgcaggtt ataccctaag ccagaatgtt ttgtttcatg
    18721 aaccacaaag tgacgagcaa ggttttatat ttgatgagat ggtccatcgt attctttata
    18781 ttgatgggct gaaagaagcg cctgaaattg gtcttttatc tcgtgaaaaa ccacaagcca
    18841 atcccaaaca tcggtatgca cttttagata agttgcctga aggcgctacc tacaccattc
    18901 aggttatctt tgaaaatgat gaagccttag acgcgcattt gatgcgtctt gaaaagggtg
    18961 tagtagggac aagccttaaa ccttcacaag tcagagaaga cataaaaacc gcacgagatg
    19021 aattgtctat aggaaaccgt ctgttttggg ttaatcaatc cattttttat cgtgccagca
    19081 caaaagacca agcagtactt attgaaaaag aactaaaaga attattcatt gaagccaaaa
    19141 tgcctttgat ttcttctggt tttgacattc atcccattaa cagttatctc aatgccttac
    19201 cttttaattt caatccacaa tatgctcgcc aatacttgcg ctttgaccga ttgatgtatg
    19261 catccgaatt agcctcttta ctgcctgtat atggacgtaa tcaaggggca agacaccttc
    19321 cctgtttcac cttttttaac cgtttgggag aaccaatact cttcgatgtg ttgcatcatg
    19381 attttatcag ccaaaactcc cacatggcct tgtttgctaa ttccggtggc ggcaaatcag
    19441 tggctacagg ctggatgatt aattcgctga tggccactaa aaatgcccgc atcattctat
    19501 ttgaaatggg aaattctttt gatcgtatac ttctacatgc caaaacacac ggcaaaaaaa
    19561 ccaagcagtt attactgagt aataaaaaag atgaagccgt tccattaaat ccattttgtg
    19621 aagcttataa agccattcct gaaatcacgg acaatctgag tgcagaacaa gcaatcttaa
    19681 ttgcgcaaaa aattagaaca atcaaagaaa atctcgaaca gcctgccagc tcagaagagt
    19741 tggcctgtaa tgatggctct cgctcgtatc tagcagagct ggccttagcg ttgcgtacca
    19801 tgattactga agccaatgca ctggaagaag agcaatttac tctggccgat gaaacactgt
    19861 taatcgaagt cttaagtgat gccatcttaa cgtcttttaa tcatgatatc ccgcaaatgc
    19921 taactgagca tattgtaagt ggctttaaac ggcgactgga taaagaaaca gttccccgca
    19981 aaaaagaccg cattttggat atgcacgacc gattaaacag ttatgtcatt aacagcgcca
    20041 aatcacgctt ttttaatgtg ccaactgaac ctttaggaga ttttgatatc ttccatgttg
    20101 atatctccgc gattaaagat gataccggaa agctcgcttt agtgatggtg tctttattac
    20161 caagaatatt ggctatggca gaagccactc aaaacgacaa cagaccaagc tttcttttta
    20221 ttgatgaatc tcatttgcaa tttcaaattc cttcggtagt ggccgtgtgt ttactggttg
    20281 ccaaagtagc caggaagtta ggtctttggc tggttgctat tacccaaaac gtcaccgata
    20341 tgaattcgga aaaagccacc aagattttat cgctaattga aacctggatt ttattaggcc
    20401 ttgatgaaaa ggaaattagc gatgtcaaac gctttaaatc attaactcca caacaagaag
    20461 ccttaattag agatattgat tctcaaaaag gcttatatgc agaagcggtt ttattaggct
    20521 cacgttatca aggattattt cgtgtcattc cacctcgcta cttgcttgct cttttaatga
    20581 ctgaaaaatc agaaaaagca cagcgccata ctctggagaa acaacatgat gtccttaaag
    20641 ccgctgaatt acttgcagaa caactcgaga ataaaaaaca aagcaaaaat catgatgctt
    20701 atttctatga tgattagctt acccatccat gcaagagaaa gcatagagcc acctagtcct
    20761 attagcagtt ttggtattgc caccaaggta ttgggcaaga tctttaccaa cagccactat
    20821 aaggtgattg gttcctgtac ctgggcagta ggaaaatttc cgcctaagct ggtagctgtt
    20881 ccagcaatcg agcagttttt acctgatcta attatcacag tggccaatcg ccccgaaacc
    20941 aatccatgga ttgaagcgcg tgccctttat gaaaatccgg caagccaagc cttgtatcaa
    21001 aaaacctatc gactggcgac tggttcagcg ctagggtttg gcgatgatgc aggacaaacc
    21061 tcagccatgc acatcaatga agaacgcaca cgggttgtag atgtaattgg cagtccagca
    21121 ggtctttatc gtttccctta tttgtcacat aaacctgaaa cacgttttgg ttctccctac
    21181 tacatcagtg aggctgatgc cgtatcagac cgcacagaga tcgctgaaat tgcttatatg
    21241 gcaactcatc ctcacctgtt attcaaccat gatataggct ccacaacaca gtcgtgggga
    21301 catgaaatcc caaggattat gcgagtcacg cagccctcac gctttagagc atccgttgtt
    21361 gcagcccttc atgcagcaga catcgtgacc aataaaaaca gtcttcatgt gacccagagc
    21421 accagtaatt cttgtggtgc taattgcata gtagccaatg tcatattcga tggccacaac
    21481 aaaaacatca tctggcagga agtatacccc aaaaaccgca acatcaactt taatgatacc
    21541 agcgatatgg gtgtagaaga tgacaaagca ggaaatggaa attatgtctt tgtagtttgg
    21601 cgaaaatatc gaggctgtat tgccaatgaa gggaaattgg ttcgcgcact ttcattcccc
    21661 aaagtggggc atcctcaaaa acgataggag ttaatcatgc acaaactgtc tctttcttta
    21721 cttgcactca tattacctaa agtactctta gccagttctt ttatgcctaa tgaatcggat
    21781 tattattaca agttgggtgg atcatccaat ctatatgtac ctcctgtcaa taatgaccaa
    21841 accattacta ttggcggtaa tgtcgatgga cggcttggtt ttacctgtaa cgggtttaat
    21901 cctgtagtct ccattactaa tacatttcag gatatgaagt cttctgccat gaatattcct
    21961 ggcggtatta ttgataacct caaaggatct gttgcaggat ttccgctgta taagctacaa
    22021 caatccatgc ctgcgcttta taacgtactg caaaatacgg ccagttacgc acagaatgaa
    22081 tttagtgtca aagtcaaaga ctgccaggat gtgaagaaga ccttggaaga aggccaatcg
    22141 cctatggaaa gcatgctttc tgtgtctgat agtcaaggtt ggcttgaagc agcaaaacga
    22201 gcgaaaactg aaaatgtaga tgtgacttca acagctaaaa gtattgctaa aaaacgtgac
    22261 gaatatggac taccctggat aggtcgggaa agcggaaatg ctggtggaac ataccaacgg
    22321 cctatcaaag tcattaacga tgtagtcatt gcgggttaca atattttact gaatcgcaaa
    22381 ccacttaata atgaaaagaa gcccgatacc aaaacaccca tgacgcatac ttggccaaca
    22441 cctgctgatg ccagtaaatg ggcagttaaa gtattaggtg atattcatgt aagcaccgct
    22501 acagatgcag ataaaaccaa acacgatgcc aaagctggca ttggattatc cgcgttattg
    22561 caaagttgtg acagctccaa cacctgtact tcaaatgtgt ctaaagcact gtggaatcta
    22621 gtagacaagc aatggccgtt gactgaagaa aaactcaaaa tggttagtgc atccaacttg
    22681 atgattacag atgaaattat catcaccata caacgtatgc cgcgggaaga gcaaatttta
    22741 actgtttcca aattggctga ggaaattgct gtacaaaaca tgctcgataa ggccttgatg
    22801 atgcgccgta tcttacaagc tggtcttcaa gtacaagaag tacaaaactt aaagcccgcg
    22861 cttgatatgg tgaaatttgc cttaaagaaa ctcgatgatg acattcattc tttagctttt
    22921 gaaagcgaag tccgtaaaaa aatgatgact gaaaccttag gtcttttgat ggatatgcga
    22981 ggtagcgata tagccaaggg cttgcctggt gatgatcatg aacaatcgca agttaaaaat
    23041 ggcgcagtct atgcgaaacc tgattccaaa ggagcataag atggttgtat ttagcccttt
    23101 atccttgtac accacctatt taggctggca gcaatatgag gttattttta atgccctgtg
    23161 gcaaaccggt ttgttatacc ttggttttct tatggtaggg tatcgattct taaaaaatgt
    23221 gctggcacct tctggtgcta cacatcacgc ggcagaatat gccttgaatc attttcttta
    23281 tgaattggca attacttttt tgatttgcgg catctttatc tacccctgtg tgccattgga
    23341 agaaaaagcc atgagtttta agcctatgtg cggtataaaa aaaggaacag atgcaaaaac
    23401 ctctacgtta aaagatacag gtactactta tgatgaagca tttgcagacg tactgacccc
    23461 caatgtcaaa atgcctattg gttttgcact tttgcaaaat tacatgtcag gaattaccta
    23521 cggcttaatg aaagttaccg gttgcaccga cagcttacag gcgattgaag gcgatttaat
    23581 ttccacctat ttacctgccg atgtacgtga acaagcattg aattttcaca gacaatgctt
    23641 ccttgaggcc agaagccaat atcacaatga accgcacgat aaaactaagg tcaatgacat
    23701 tttaaaaaaa tacggtggtg aggaagattt gaaatgggtg ggttccaaag tctatcaaac
    23761 actatactat gataaaattt acgcaagaca acccgtagct ggctttacct ttaacgaagc
    23821 ccccaacaaa aatctcgaaa aagcagcaga acgtggtgat attgatgcca aacatctgcc
    23881 agagcaaggc tatcccacct gcaatcaatg gtggaaaaag ctcaaaacag atttggtgca
    23941 agtagccaat aacgccagtg tctttgacag ccacctgaat tactacgcgg ttttagacag
    24001 ggtacgcaca ttcaaaaatg accatcccaa agcctggggt tcgcagttaa gctcagaaga
    24061 ctacattgcc aagatgttgc ttaatgacag tcgcgacatg caggctaaca gtatgaaaaa
    24121 cctaatggga aacactaatg gggcttttgg tggtgccatt tctcatgggt tagtaaatat
    24181 tgggcaatta acaaaatcat ggacatcaac tccattaaag cgtgaagcca ttatgcaaac
    24241 gctacctgtc atgcaggcct ttttgtattt cttcctgatt atcttgactc ctgtgatttt
    24301 ggctctaagt ggttataacc ctaaggcgtt aggcagtatt tgcggtctgt ttataatggc
    24361 aatattcctg caatacctat ggcatctggt gggctttgtc gaacgcagtg tgcttgatcc
    24421 tttaggacaa aacgatgcca ttgcagccat gcgcaatatg gcggttttat tctactttat
    24481 tgcacccatg ttgctattaa aactgtctag tcattttggt ggggaagcag gggcagccct
    24541 tggtgcattg gttaatgacg cagcgcagca cagtaacaaa gttgccaact caggtgtgga
    24601 taccatcaag caaggggcaa aaatagccag catggggaaa gtaaaatgaa gctagtctcc
    24661 atgaatatgt ctggcgtatt cagagccact gattgcacca tcttcataaa gttcagttgc
    24721 cttccccgca acatagtatg gtttatcttt ttcatcggaa gcaaaggcaa caatcgcttg
    24781 caaagcaaga agacttatct tgccaaatat tttcaatccc ttcaaaacca ccgactgtgt
    24841 tgggttgttc ttcctaatca taaggagttt ttccatgtta aataaacgat tctataaatc
    24901 cattataggc ataagcaaat tcattctgcc agtggtattg cttttgttat tagcacctca
    24961 attgatccga ttcagtactg aatttagcag catgaatgac tttttcaaaa cccatcaaat
    25021 aggtttttta ctctgtcata tgctgtttta tctggctctg tattgggctt ggccaaaact
    25081 gattacaagc atggtcaacc gacgcccaca tgaacttgat gaggttcaaa ttaaattggc
    25141 tttgcaagca aaatactacc tgcttgcggc gctaatcttt tttgaattac tggtttggtg
    25201 gagataaatc atgagccaat atcccgttga aaaccttttg cgtgaaccca ctgaattcta
    25261 tacctttctg acctgcactt cactggcatg gctaactgtc gccaaaccac acctgttttt
    25321 actcactcaa gacatgggag tctatgcagc acttagcctt atgacattgg gtctagttag
    25381 aggataccag gctttccgca tcaagcgtta tcaccgcaga cttattgcta tgccttatta
    25441 tgctttgtcc accacggaag tgccattatc aaagaaatgg ttgtttcttg ggaaagggtt
    25501 tcgttggttg cctcatcata cgcagcgatt acatcaaatt aaacaaatta gaaatgaatt
    25561 atttatgcaa cgaaatacgt gctatcgcaa aatacgtgat tattgcaaaa accacgaaag
    25621 ttcattattg acccaactat ttaatactcc atcaaaattc aatccattca aacctgatcc
    25681 acctgtaggt ggcagctcat acctacatgg gttaggtgaa aaagatagtt ctgtctatat
    25741 cccgcaggaa gttcgagttg gtcatacttt tgtagtaggt acaactagag ttggtaaaac
    25801 acgcctggca agcatcctaa tcaatcagga tattagaaat ggcgatgcag tgattgtcgt
    25861 tgaccccaaa ggagatttag atttagttcg tgatatgtac tcagcctgca aggctagtgg
    25921 cagattacat gattttagag tggtgcattt aggttttcct gaattgtctg ctcactacaa
    25981 tccgctcaaa aactatgatc aagtcagtga ggttgctaca cgtgttaccg atgcgattca
    26041 agctgagggc gaaggaaaac agtttgcagc ctttgcctgg aaatacgtga acattgtagc
    26101 gatctgcctt gaagaaatga aacaacttat ttcttatact tctataggat tttacatcaa
    26161 tcgattggat caactactaa tggcctactc cgatgccata ctccccgcac atgatccaaa
    26221 ttatcatgaa aaaatagaag aaatcatcgc taataatgat tgccgtgtag ataaatacgg
    26281 caatactccg ccgcctatga gccgctcaaa ggcggtggtg aaatatttac aagagcatat
    26341 cagtaaaacc atcacttcag gcaacgttga aagccttcat gatcaagtac tcattgatct
    26401 gtttgatgcg gccatcatgg ataaaaatta ttacgataaa atcacagcca gtgttggtcc
    26461 tgtattatca gagattaata agagtaatgc ctcaaggatc ttttcatttc ataaaagcaa
    26521 ttgtgaaatc gaattgatga gtgcaataaa aaacaaacaa gtcatctata tcgggctgga
    26581 tagcttaaca aaccccaata ttgcccaggc agtcggtaaa gcctttttgt cagatttagt
    26641 atccactgct ggaaaaatat ataaggaaag taacgcgaat taccgtctca atctccattg
    26701 cgatgaactt tctgaaatca tccaagactc atttgtcaaa attttaaata aagccggtgg
    26761 agctggtttt caagtcaccg cttatgctca gaccaaacaa gatatggagg tggcattagg
    26821 ctctaaagcc aaagcagaag tgactgaagg aaatctaaat acgctcatca tgttacgtgt
    26881 taaaaatgaa gaaacagcca atttattagt taaagtgtta ccaaaaattg gcgtggtcga
    26941 gcacactcaa gtgtccatgg tcaacgacac accccatggc gaggatggcg tttattttaa
    27001 caccaccaat gaagatcgag tacaaaccac cgcagtacct atgattgatg tcaatgacat
    27061 tatctcattg cccaaagggc aagcctttgt tttagtgaat ggcggagagc tgtacaaagt
    27121 aagaataccc ttacctgtga acgatggatt agcccccaag gatatcaaaa gcgctattcg
    27181 tgcaattaac caattggatg ataaccttgg agattaatat gaaagcagaa attactttaa
    27241 accttcgtac ccgtgaagtg tataaattat ttgagaggaa aattagtggg gataggttat
    27301 ttattgatgt tattttgcat aagatgaata ttgtcattgg gcaaaatcgt aagccaaatc
    27361 ccatggctct taagatgctg agcgagatgg aacaacaact caattctcta acaaatgcat
    27421 tttcatctga aattaggcga tttgaagaat tgctagctaa gaaaaaagag tttaaggaca
    27481 aacaaatcaa ttttgttgtg cagtttcatc caaagattat tgtatgtaac cctctaagta
    27541 ttaaattagc tgaattgatc gaggtttatg accaactgat agcaactttg aaattactcc
    27601 gacttgcagg atgctttgag actgatcagg catattttat ccatatgaaa caaaaacaaa
    27661 agctcactaa ccaatcacta agcaaaatta ttttggctga gtgaattgaa ttctcttaga
    27721 aatggcattg agttaaagtg aagccactat atctgacaat gccataaaaa ttattcaaaa
    27781 tccctcaact aagttgatga tttgtttttc tcaaaatctt taaatattgc ttctgctttt
    27841 ttttgttgtt caagaagttt gcaataatgc tctcgcatag aaacatcttt gccattttta
    27901 cacaactgtt taaatgtttc tatattctta ctttcttgag ctggatttgc aaaaatcatc
    27961 gtaggaaaac acaataagat aaaaatcaat tttttcacta ttacatcctt aataaataaa
    28021 acaacactcc aaacaagatt gtaaataatc ctgctccgct agaataatat aatgcattta
    28081 ctagcacaac attaacattt gagtgcatcg aaactgtact atttcggaat taattaaaaa
    28141 gaaactattc tgatagcagt tctaaaattt taggaatcca agtttcttga taccacaacc
    28201 actgattatt aacgactaat tcgccatatt gctttgcctg tatattccgt gtactagcat
    28261 ctttccacaa tcttttccat aaattttgat gagctgtttt gtcaaaattc ttcccctgtt
    28321 ttttaataat atctattacc tcattttgag ttagtttttt atattgtttg tatttaaaga
    28381 gaatattatc aatcgccatt ccactggctg atttttcatc aataaatcgg taagctctat
    28441 cagcttgatt ttcatgattg gtatttatcc gcatataaaa gactcgataa ctatatcttg
    28501 aatcggttaa agaatcacaa tctgtttcat aatctgaaat aaaatccagt agatttttag
    28561 gcaattcttt tttttctatt agttcatcaa cttgactttc accaaaagaa aacagttgta
    28621 atgcaatcgg agtaattttc tcaagcccat agtcattccc aaataaattc ttcaatgtag
    28681 aattataatt tatgcaacac gcttggaatt ttgcgctaaa aaacgaatca attttacttg
    28741 tcatttgatg ctcaatttca tgcctaattc caatcaagaa taacaaatta tctttgatgg
    28801 ctttctctaa aggacaactc tcatggttta aacacttttc taattcccaa tatttatagg
    28861 caccatgttt agttttgata aataactttc tg
//
LOCUS       DACVWI010000018        28581 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.018, whole genome shotgun sequence.
ACCESSION   DACVWI010000018 DACVWI010000000
VERSION     DACVWI010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 28581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28581
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.018"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1158)
                     /locus_tag="JBH85_02955"
     CDS             complement(<1..1158)
                     /locus_tag="JBH85_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HAU0945149.1"
                     /translation="MTEMHRLLQRQLKKFGFTADGLPQNLESWTQFIAHINKTYYEND
                     QDRYLLERSIDISSKEMRDINAKLEYAQDIAQIGYWHYDADTDTATWSKGLFKILGLP
                     PSNVALNYSSFLDLVHPNDKAGLKNVVEKALKEKEDYDYELRVRNGDNDYKWYRTIAR
                     ANPHKNEISGVLMDISKRKIIEEQVHELNNKLVSTARLAGMSEVATSILHNVGNILNS
                     VNVSAIILKKNISKIHYKKLSAIKTMLDENINQLSEYLLQNPKGKLILPYLDALSKTL
                     HEEYEENMKESNSLETNINHIKEIIAMQQSLSGLSNLTEKISIHDVILNAVKSVILDK
                     HQIDVRIEIEPDINEFITDKSKLFQILTNLLANAKDSVLLHEANDSRKVVIS"
     gene            complement(1181..2347)
                     /locus_tag="JBH85_02960"
     CDS             complement(1181..2347)
                     /locus_tag="JBH85_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945150.1"
                     /translation="MMKIESFQYIQNQGWSIPTFPELDSENTLILVFASPIFRANSKP
                     IEELAQAYKKSKIIGCSTAGEIFGPNIFDNSISVAVVQFESTKLQLAKTEVKSTEESY
                     EAGVHLSKSLHQKQNPQSIFVLSDGLNVNGSELIKGLNQHAGKGVIITGGLAGDGADF
                     KNTWIIYDGKIVDHCIGAVGFYGDQIHVGHGSRGGWDIFGPERVITRSKANILYELDN
                     QPALKLYKTYLGDRASELPAAGLLYPLAIRNPSAPDSQHIVRTILGVNEEEQSLIFAG
                     DLPQGYYAQLMRANFDRLIVSANEAGENANDRLFKNGNLNTQPVLAIDISCVGRRLVL
                     GELTEEETETTLQSLPPKSIQIGFYSYGELSPLATGTCELHNQTMTITTLLESP"
     gene            complement(2513..3394)
                     /locus_tag="JBH85_02965"
     CDS             complement(2513..3394)
                     /locus_tag="JBH85_02965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0945151.1"
                     /translation="MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAMSKRIRKIEDELN
                     VRLIISEGSKLIFTETAKQLIPYARQMLSAHQNMVHTLKNSQQFTQSIIIGASVYVSH
                     YVLPGFFKYLKETHPTIQAHLKTISEKEVEYILNHGTVDLVICPAREVSEKLLGNCLL
                     WEEKLNLVVAANHELAHRTSELSLSELSEYPAILTEKGAALRDKLDTLFEKNQLVLIL
                     GFEMSTIDAIKSLVEYGLGWSYLPDSLLSEKLKILKIKDLELTISFHAFYLKKRISDR
                     LINDLLSNFKKWQNRDN"
     gene            complement(3616..4800)
                     /locus_tag="JBH85_02970"
     CDS             complement(3616..4800)
                     /locus_tag="JBH85_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAU0945152.1"
                     /translation="MHLKRTLSLTLLAFYGLGTILGAGIYALVGEVAKEAAQFTPLSF
                     LIASIIALFTAISYAELSSRLPLSAGSALYVRRAFHQKWLSGLIGWIVVLTGVISAAT
                     LSHGFVKYFQLFLPLPPSLIITILTVILAGVAVWGIRESATLILYMTLMEVGGLLMII
                     YYGRYSFASIDIQSFSLPHSFDGVLIGAFIAFYAFIGFEDMVNTAEETINPEKTLPKA
                     IFLALISATILYVAVAWVIVSTIPSNALVKTDMPLIEIIKLQGQSPLLFSIIALISIT
                     NGILVQIIMASRLIYGMANQQNAPQIFSFVYSKTQTPVNSTLLVSLIILLFAYALPIT
                     TLAKLTSSIILCIFIIIHASLIKIKLTKKKPTNAISFPIVFPMISILLTLAFLIIQFF
                     LK"
     gene            complement(4868..5644)
                     /locus_tag="JBH85_02975"
     CDS             complement(4868..5644)
                     /locus_tag="JBH85_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAU0945153.1"
                     /translation="MSRREWPANDYAIGSYIQATVAEEYLPYLNMKPADKVLDIGCGN
                     GAFTKNILMKVPQGSVLGIDASENMLHLAQDVSKEYPNFSVQKADVLTMDFHLQFDYV
                     VSFWCLQWACANIQKAFLNIVNALKPGGKFLTLFPAGDDPFIMSYYALKKSGQFASLH
                     DFIPPVDYSHLKNLEKKLESLSCQELKVKLCRQSITLPSLDVFRKFVNGIAFYQGQLP
                     NEEIQKINEAMVQYYDNECQAKYNGEYQFNFTIYLVTGEK"
     gene            5852..7063
                     /locus_tag="JBH85_02980"
     CDS             5852..7063
                     /locus_tag="JBH85_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent formate dehydrogenase"
                     /protein_id="HAU0945154.1"
                     /translation="MFSQSQQKIVCVLYDDPKGGFPPNYARESIPELKQYPDGQSLPN
                     PDSIDFIPGEMLGSVSGELGLRQFLESNGHQLVVTSDKDGSDSVFARELKEATVVISQ
                     PFWPAYLTRDRIESAPKLKLAITAGIGSDHVDLQAAMEHNITVCEVTYCNSISVAEHT
                     VMMILALVRDFIPQYNTVIDGGWNIADCVSRSYDLEGMQVGCVAAGRIGLAVLRRLKP
                     FAVKLHYTDRHRLPVQLEQELNLTYHPSVESMVKVCDVVSIHCPLHPETEYLFDERLI
                     KQMKRGSYLINTARGRICDQHAVADALESGHLAGYAGDVWFPQPPAKNHPWRSMPNHA
                     MTPHTSGTTLSAQARYAAGVREILECWLGNKPIREEYLIVSQGHLAGVGSHSYSAGNT
                     TSGTEQAAELV"
     gene            complement(7169..8293)
                     /gene="ceg10"
                     /locus_tag="JBH85_02985"
     CDS             complement(7169..8293)
                     /gene="ceg10"
                     /locus_tag="JBH85_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg10"
                     /protein_id="HAU0945155.1"
                     /translation="MFTKSCAKATDQNRQELFMDSLLGDFQKMKEKALNQQQERRSKK
                     RELHCKSSEKTKKPNQYAALTHSQVQEVKAKVRTVNDKFHLNAEEKKLWELILLGNQL
                     AQNISSCDLPTDNEDDASLVKLTQIFADETLERTDLTWLNKILKIALYSRGSGFGNCQ
                     EKAFFVFALLLHQAQKPESLIHSLRLATFNNHFILIVNEQFLMDPWLNLAFPLSKGNQ
                     QLEIGYVFERFGRLVNYFSINQEGQCFTHTVREGGTIERDPSSEKDMANCIHSLLDHR
                     DYFDLSIVSEREIHTNTKRRKYENQEQEVPQPRQETSNQPTETVYTDSSHNTWDNEGA
                     ADDFLEHFEQTHPVYNPGFFSFGQDDVGLKPDLPKNLFKF"
     gene            8530..9213
                     /gene="lem2"
                     /locus_tag="JBH85_02990"
     CDS             8530..9213
                     /gene="lem2"
                     /locus_tag="JBH85_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem2"
                     /protein_id="HAU0945156.1"
                     /translation="MVIIGILMSKERIKKTALEIVKYIHGNIKACNIPNQKKENKFFA
                     PLVYLCQTECDKILSNTKISLLERLLKCAKIIGDLQSGNCMQQTFLAFQRLLMRLIED
                     KLSNFSTCIPISVMTISNHAFLIIDNDIVCDPWLNFVGDLKDYCFANMKRKEYFGIRS
                     DWTCFTNSEVYDEDSTEFTIQFVNALGVGISGFSEIKLANQLMQSSSMASDLGEDPVI
                     SIPKEFHRI"
     gene            9246..10094
                     /locus_tag="JBH85_02995"
     CDS             9246..10094
                     /locus_tag="JBH85_02995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0945157.1"
                     /translation="MLLFLFKFWFDLTVNILYLIMMGERMNFLNNKIVMITGASSGIG
                     QACARLFAAQGARLILAARRVERLHELSSGLKHHNNQEHYILPLDVCKKDLVRQQIES
                     LPGQWNSIDVLINNAGLALDTLPLHQGILEHWDTMIDTNIKGLLYISRLILPGMLERN
                     SGHVINIGSIAGHECYPNGNVYSATKHAVHAISKSMRLDMLGSAVRVTEIAPGAVETE
                     FSEVRWKDKQRAIDFYKDFQPLMAEDVADAALYCATRPLHVDIEQMIIMPTVQASANH
                     LSRKGR"
     gene            10613..10843
                     /locus_tag="JBH85_03000"
     CDS             10613..10843
                     /locus_tag="JBH85_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945158.1"
                     /translation="MNKLIVAVTAGASLLLLTGCAVDGVAIDDVSYESGYSNDYVYSV
                     GYYSNRPYWGNNYYSSPSFVGPYGYWGGDYDF"
     gene            complement(10896..11465)
                     /gene="efp"
                     /locus_tag="JBH85_03005"
     CDS             complement(10896..11465)
                     /gene="efp"
                     /locus_tag="JBH85_03005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HAU0945159.1"
                     /translation="MAVYSTNEFKNGLKVMVDDAPCSILDCEFVKPGKGQAFTRIKIR
                     NLKTGRVVERTFKSGDTLPSADVADVEMQYLYNDGEHWHFMVPDTFEQYAVTENVLAD
                     AAQWLKEQDVCVVTLWNNEPIQVTPPNFVILAITETDPGLKGDTSGGGGKPATLETGA
                     VVRVPLFVQTGELIKVDTRKGEYVSRAKE"
     gene            11537..12517
                     /gene="epmB"
                     /locus_tag="JBH85_03010"
     CDS             11537..12517
                     /gene="epmB"
                     /locus_tag="JBH85_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HAU0945160.1"
                     /translation="MRDTSLSWQKILAQGFTSTTDLLDFLELPRSEGNLFAEKQFPSR
                     IPLGFAKRMQKGNPKDPLLLQVLAKEDELSEADDYVIDPLSESNTLIKGLLHKYHGRV
                     LLTLTGVCAVNCRYCFRRHFPYQANNPGRRGWKEVCAYIANDSSITEVILSGGDPLLA
                     ANLVLEELLQSLEEISHIHTLRIHTRIPIVLPERIDKGLLDLLTNTRFKKVIVVHCNH
                     PQELDESVLRACSDLKKAACYLLNQSVLLAGINDDAGILSKLSHALFDYGIMPYYLHL
                     LDKVKGSAHFDMPLLRAQSIYHQLQSLVPGYLLPRLAREEPGRSSKTLLI"
     gene            complement(12586..14670)
                     /gene="ppk1"
                     /locus_tag="JBH85_03015"
     CDS             complement(12586..14670)
                     /gene="ppk1"
                     /locus_tag="JBH85_03015"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HAU0945161.1"
                     /translation="MEFLMDTTLDNPDYYINREFSAIAFNQRVLMLANDERVPLLERM
                     RFLSICSSNLDEFFEIRVAGLKEKIAMSSGKLTIDGLRADEAFSQISHKAHALIDQLY
                     NIFNKQLLPALRKENIHFLETDQWTDDIHLWAKHYFKHEILPVISPIALDLAHPLPRL
                     INKSLNFIISLSGKDAFDRNINYAVVHAPRSIPRMIHLPSELCGDAHYFVYLSSIIKT
                     HINSLFPGMEISGCYSFRLTRNSDLFLREEEIDDLAKAVQREIFSRHYGHVVRLEIEN
                     KCPEKIVDFLLQKYHLRHEDTYYCDGPVNLQRYMSAINSIDRPDLNYPAFTPQYPKFS
                     KSQRNLFNILDEQDILLHHPYQAFDLVIDFVRQAASDPNVLAINQTLYRTHSESVMVD
                     ALVNAAHSGKEVTAVIELRARFDEESNLKLANKLHAAGILVLYGVVGYKTHAKMTLVV
                     RRTHGKLKRYVHLSTGNYHEQTAKRYTDLGLLTSEPTITSDAQLIFQQLTGLGKVVKL
                     KALSHSPFTLQKTLLQFIEQCSTAATGGIDTEIILKVNGLTDKVMIQALYKASQAGVK
                     INLLVRGVCCLKPGLPGVSENIRVLSFIGRFLEHHRVFYFRINEEEHYFCSSADLMER
                     NLYNRIEIMFPIYDEGCKKRIKNEIIKNYLKDNNNVWEMQSDGTYKHLMQNGGCAQEK
                     LIALYEEEDKSI"
     gene            complement(14699..15904)
                     /locus_tag="JBH85_03020"
     CDS             complement(14699..15904)
                     /locus_tag="JBH85_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAU0945162.1"
                     /translation="MKRIFFVVFLLCIETACNTAKNNPLPAQLADKALVPGFKEVRTE
                     FTRSDDPIIKKQSLERVKQLAKAYPDTMFHQKGSFSLLIISGGGDYGAFGAGLLNGWT
                     KSGSRPTFTTVTGISTGALIAPLAFAGPKYDATLKKVYTTITTKDVLSNKPVLWTLLT
                     GGSALKGTKPLQDLIARHVDEKLLDDIAKGYYQGRRLYVGTSNLYSRKLVVWDMTRIA
                     ASKNPERVQLFRKILLASASIPVVMPPVYFDVMANGKPYTEMHVDGSTTFAVFLSRLG
                     SDIKTAKKHFKLKQKPNVKIYVIRNNQNQFHYKVIKPKLLVIGKRAIESVTASQGAAD
                     VIFIYLCALIEGVDFNLANVPNEFDSNSEELFDTQRMNQLYQIGYSKAVKGYPWQKIP
                     PDVRALHGD"
     gene            complement(15980..16513)
                     /locus_tag="JBH85_03025"
     CDS             complement(15980..16513)
                     /locus_tag="JBH85_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HAU0945163.1"
                     /translation="MIKTFIEIIYSFGKIGLISLGGGNSMLKLLEYEAVTYRHWIGKE
                     EFVGMLGSSFLFPGLTGIKLAALIGYKAAGITGLILAIICLNLPGLIMALVGYQWLNS
                     HNGPITRKIMISVQYGALALLAAATFSVVQGVIDVYYSIPMAICCILFFLALAFWNLS
                     PFYGFLAFIAICFFVVR"
     gene            complement(16510..17187)
                     /locus_tag="JBH85_03030"
     CDS             complement(16510..17187)
                     /locus_tag="JBH85_03030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945164.1"
                     /translation="MPKQIKSSSVSKTENEILIMQRLVWNFEFSSEQTTPLTTLGHDA
                     QDNLKWEKRYFWPTDQIIRLNTIDSSLLDLANYQKKHKEDYYYLLPDSDHNIKQRRNE
                     LLYKPVIKQSGSALGFGSKIHLETPQTLPCHGDAGQLNRQELLKKIKEKGIVVFVKKE
                     AFVFKFPTTPTVKLELARLEVKDKVYFSACIEGRSLNLVETISVLLFGTQPSFEYVTF
                     LKKTLKI"
     gene            17306..19744
                     /locus_tag="JBH85_03035"
     CDS             17306..19744
                     /locus_tag="JBH85_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAU0945165.1"
                     /translation="MAIVFFLIYLAFTLVVLSRRINPLVWEIGSIIYLIPATFYFGFP
                     WIIGLFIWFFIIAAVLVVRVEPLRLFIGDYLYKTAGKSVPKLSKTEEEALNAGDTWLE
                     QDIFTGKPDWQKLSAVSTELTAEEQAFLDNETHTLCSMLDEWEISQEYDLSPKVWNYI
                     KEKGFLGLVIPKEFGGKGFSARAHSDIVMKIATRSRVAAVTVMVPNSLGPGELINYYG
                     TDEQKAYYLPRLAKGVEIPCFALTEPGAGSDATSIQSEAIVVKKKIDGKSVLGLNITL
                     DKRWITLAPVATLIGLAVNLKDPDGLLNGEGEEGITCLLIPRDTKNLEIGNRHLPADQ
                     PFMNGTLRGKDIFVPIDTIIGGQKKAGSGWQMLVECLSIGRSISLPALGAGSSSISYL
                     TTGAFARIRRQFNVEIAQFEGVEEKLAEIAGLNYLINSTRLLTVAAVNEHKKPSVASA
                     ITKYFNTELARITVNASMDVHAGRAIVVGPRNYLNSLYQSVPISITVEGANIMSRNLL
                     IFGQGSMACHPFIRDEFYAISSENKEAFREIIWKHIHYFMQNFAKTICSAWTSGLFIA
                     VPENSMKREYKKLARLSYAYSWLADLSLIYLGGDLKRKERLSARLADGMSYLYMAMAA
                     LRNVQLNQDHPDEQLHARWAVSYCFYHAQKSMIALCHNFPSKFLGFIARVVAFPFGQT
                     MRYPSDKLDHQLARLMTGNNHYRDRLKKSVFLSGDPKQPVDRMEHALQLIIEADGLSK
                     KVSDLKRYKWSKLKEKLKEKVESGQLSQQEMEELLAVEDARWDAILVDEFTFDSMKKK
                     TLHSVIEKMKSPLA"
     gene            19858..20550
                     /locus_tag="JBH85_03040"
     CDS             19858..20550
                     /locus_tag="JBH85_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0294 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945166.1"
                     /translation="MPKYTLPTRDALLKAMQVGETSIEAAEYMATRFEQILTKAKLLP
                     ECNDMLEKIKEYAQFVKFKLLSSAQVWSGQERPTSDYQNTQENKAEFLASHLEGLPSG
                     LKLEVAIGDDAKILRGFSSNGKMVEGDQLKTMDGLLEGWLAKNSLAISGGAVVKIDNT
                     GNQTKVDPQEIRQLINDSEKGVAKYFADKGVGMEVAQRTYQEPKALETKREEIRQEIE
                     SGAEAPTTQSIR"
     gene            complement(20587..21249)
                     /locus_tag="JBH85_03045"
     CDS             complement(20587..21249)
                     /locus_tag="JBH85_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HAU0945167.1"
                     /translation="MKTAMILAAGRGERLRPLTDKMPKALCTVRNKPLIEHHIINLAN
                     AGFERLIINHAYLGGQIRQYIGNGKQWGLNVIYSPEPPGGLETGGGIVNALPLLGEEP
                     FLTVNADIYTDFDFAKLQLKNIDTFHLLLIPKNPSLLHHGDFGLINGSHLTNTNQAYT
                     FSGIACYNPKVFANCRQGRYSVTPLLRKYVEQNSATGSVHSGIWYDIGSFDRLQAANQ
                     FT"
     gene            complement(21246..22292)
                     /locus_tag="JBH85_03050"
     CDS             complement(21246..22292)
                     /locus_tag="JBH85_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HAU0945168.1"
                     /translation="MKLLFIKMGVYQPHSVNKNGKYTMHERENALKEWLAQTIQQKDF
                     VLLPLAGDASFRRYFRIQYNGLTQVVMDAPPEKENIEPFLHIANVLDKIKIPVPDILA
                     INKREGFLLLSDLGDQLLLNKLNHETVDNYYNQAMNLLLQIQKCPTDDPELPLFDKSF
                     MLKEMNLCLEWFLKAYLSLDLKQDELQLFQHTIEWIASEVATQPRVFIHRDYHSRNLM
                     LVKNKDSCLATIDFQDAMLGPVTYDLVSLLKDCYISWPREKVLEWVTYFHEQSPLASI
                     YSLTDFIRAFDLCGLQRHLKVLGVFCRLYLRDNKAGYLGDLPLTLKYALECAETYEEL
                     HPFFNFLQKRVYLP"
     gene            22316..24985
                     /locus_tag="JBH85_03055"
     CDS             22316..24985
                     /locus_tag="JBH85_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HAU0945169.1"
                     /translation="MLAVNMRFYKKLIISGFISFIALLRGLLYCHLKRLFKKWPESLF
                     SVKWILMAIGITACVLSLINYQGLAYSAALINEPIQACVIAREVDLTDDIRTKFAQCL
                     GWQADQSSPVCLGFYKPIAVTPLASPDEVRILADTASFYRTQRSTLSGHVEMQQGQRV
                     VNAQTAYVYRDPKTNEVTKIEFLNHVRYLEPDRMMIARKAVVYPQDKSGEVEDVLYRF
                     NTNRSNALLPAWGRASLIKRFANQDYFLKEATYTTCAPQDKAWAIEAESISIDNEKGK
                     GIARNAKLRIHEWPVLYTPYLSFPTNRDRKSGFLMPIVGYSNVGGADLGIPYYWNMAP
                     NYDMTLVPHLYTKRGLMLGGQFRYLTSKSTGTFNGNFLPKDKAFGRFLQDNEVEFPQI
                     RGLSTNRWEVNFVDSTQFLSDLQLNVNFQQVSDDYYLQDFSTNLASVTQRQLLRQADL
                     TYTTENWTFRGMGQSYQTLHPINEIPVSPVYERLPQLMARGYYDDLPFNAQFNILGQY
                     DQFHWPNDSWNIALNNMPQGPRFHLNPILSVPMMKPWGYVTPSVQFVENYYDISRNYT
                     WGTSRANYNLTIPRYSLDGGLYFERDLHLKGTYYIQTLEPRLFYLRVPYYNQTLIPVY
                     DSGFMIFNVDQLFRTNRFSGFDRIGDANQLSYALTTRWLEDESGAEKANFSIGQIKYF
                     SERRVQLCQSPTGFCTDNPDTFGNLSSTFGTSPVASRAVYKFNPAWGITGDYIWDPAT
                     RATNNADLNLHYQPARNAIINGGYSYLVNGDVTQVRNNDTENNALHQAILSAAWPLSE
                     KWSGIGAYSYNISKNYSMMSFLGVQYDSCCWAMRILGGRIFRSLNEEFEPQYNNNIYL
                     QILLKGLGSVASSDPSGILNTYIPGYYDPFRRR"
     gene            25110..26450
                     /locus_tag="JBH85_03060"
     CDS             25110..26450
                     /locus_tag="JBH85_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAU0945170.1"
                     /translation="MTKNNINCPKNVNEDYGMFKRIALVCALFSGVCFAEGKQLLDKV
                     VAIVNDNVITSSELNAQVELSKKQIIAQNMQMPDESVLRKQVLQHLIDVDLEMQMAKQ
                     NGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQGISWQEYRQNIRKEMLISRVQQK
                     AVGKDIIVTNEQVEQYLKTSGRIENSNLTYHLKNIVIPLSEEPTTKQLQRAKIEAENL
                     LNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMKVGQVAGPIR
                     AGNGFHLIKLVAVGGENQRHVITQTHVRHILLKPDASMVPSEAIKQVNNIYRQIQSGK
                     DFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHL
                     IEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINIVDKDLA"
     gene            26447..27421
                     /gene="pdxA"
                     /locus_tag="JBH85_03065"
     CDS             26447..27421
                     /gene="pdxA"
                     /locus_tag="JBH85_03065"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HAU0945171.1"
                     /translation="MNPLLISSGEPAGIGPDLCLALAETDLPVVILGDLSLLEARASE
                     LNLSIKFLEYSPHQSFKKKAGYLTVWPVPCAAPVISGELNPQNAAYVMELLTLGASLC
                     SKGEFSALVTAPVHKANINAAGITFTGHTEFFADFFEVETVVMMLACSQMKVALVTTH
                     LPLRMVPDAISSLLIIKVIQQLHHSLKHDFGIQSPKINVAGLNPHAGESGYLGREEIE
                     IITPALNTLKNQGIDVLGPLPADTMFITNHINHCDAYVAMYHDQGLPVLKYAGFNEAV
                     NITLGLPIIRTSVDHGTALELAGKNKANPGSMLAAVKMAKDMALTRIK"
     gene            27423..27914
                     /locus_tag="JBH85_03070"
     CDS             27423..27914
                     /locus_tag="JBH85_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HAU0945172.1"
                     /translation="MSLISLIAAIDETGGLGINNQLLCYLPADLQHFKSITMGKPIIM
                     GRKTYESIGKPLPGRLNIVISQSIQSIPGVVVVDSLGRAIKETADASEVMIIGGAKIY
                     SQAISMANRLYITRIHHQFTADVFFPKINELAWCCRSKEYRQHDDKNQYDMTFCVYER
                     ISI"
     gene            complement(27921..28466)
                     /locus_tag="JBH85_03075"
     CDS             complement(27921..28466)
                     /locus_tag="JBH85_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3421 domain-containing protein"
                     /protein_id="HAU0945173.1"
                     /translation="MSKLVYLLLMIFFLNPAWANTHYHQHPVSPLANALRTGTDTNGN
                     ALYLCRAKLFNSIQPGKTWAGYGRCNVPYGGKEYVLSQFTIPNQNEFGRYSWEPNVEH
                     ALLMGKDTNGNPLFVCQSNFNGSIQPGKTWPGYSHCNISYGGREIITDNYRILSRPTE
                     IIVRTQPPVHRHPSQNRHYHY"
BASE COUNT         8574 a         5199 c         5912 g         8896 t
ORIGIN      
        1 ggaaataaca actttcctgg aatcattcgc ttcgtgtaat aaaacagaat cttttgcatt
       61 agcgagtaaa ttagtaagaa tttgaaataa cttggattta tcagtgataa actcattgat
      121 atccggttca atctcaatac ggacatcaat ttgatgtttg tccaatatga ctgattttac
      181 cgcattaaga atcacatcat ggattgaaat tttctctgtt aaattcgata agccgctcaa
      241 tgattgctgc atggctatga tttctttaat atgattaatg ttagtttcca gactgttgga
      301 ttccttcatg ttttcttcat attcttcatg cagggttttc gataacgcgt ccaaataggg
      361 aagaattaac ttaccctttg gattctgtaa caagtattcg cttaattgat tgatgttttc
      421 gtcaagcatg gtttttatag cggacagttt tttataatga attttggata tattcttttt
      481 cagaataatg gcagaaacat tgacgctgtt taatatattg cccacattat gaagtatcga
      541 ggtggctact tccgacatcc cggcaagtcg agctgttgaa accagtttat tattcagttc
      601 atgaacttgc tcttcaataa ttttcctttt ggagatatcc atcaaaaccc cggaaatttc
      661 gtttttatga ggattggctc ttgctatcgt tcggtaccat ttgtaatcat tgtctccgtt
      721 tcttactcta agctcataat cataatcttc tttttctttg agggcctttt cgaccacatt
      781 ttttaaccct gctttatcat taggatgcac aagatctaaa aatgaagaat agtttagtgc
      841 cacattacta ggcggcaaac ccagaatttt aaatagtcct ttggaccatg ttgcggtatc
      901 tgtgtcagcg tcataatgcc aatacccaat ttgcgctata tcctgggcgt attcgagttt
      961 tgcattgata tccctcattt ctttagaaga aatatcaata gagcgctcta ataaatatcg
     1021 gtcttgatcg ttttcgtagt atgttttatt gatatgtgca ataaattgag tccaactctc
     1081 cagattttgt ggtaatccat cagcagtaaa accaaatttt tttaactgtc gctgcaacaa
     1141 ccgatgcatt tctgtcatta ttactgaatt cctttttggt ttatggactc tctaacaggg
     1201 tcgtaatggt catggtttga ttatgcaatt cgcaggtacc tgttgccaga ggtgataatt
     1261 caccgtaaga gtagaagcca atttgtatcg atttgggagg cagtgattgt aatgttgttt
     1321 cggtctcttc ctccgtaagt tcacctaata ccaatcttct gccgacacaa ctaatatcga
     1381 ttgccaaaac aggttgtgta ttcaagtttc catttttaaa aagtctatca ttagcgtttt
     1441 ctccggcttc attggcgctg acaatcaggc ggtcaaaatt ggcacgcatt aattgggcat
     1501 agtatccttg aggtaaatcg ccagcaaaaa tgagggattg ctcttcttca ttgactccca
     1561 gaatagtgcg cacaatgtgc tgagaatctg gtgcggatgg gttacggata gcaagagggt
     1621 aaagcaagcc tgccgctggt aattcagaag ctctgtcacc aagataggtt ttatagagtt
     1681 ttagcgcggg ctggttgtcc agttcataga gaatatttgc tttagaccgt gtaatgactc
     1741 tttctggtcc aaaaatatcc caacctcctc ttgaaccatg tcctacatgg atttgatcac
     1801 cgtaaaaccc tactgcccca atgcaatggt ctacaatttt tccatcataa ataatccagg
     1861 tatttttaaa atccgcacca tctcctgcta gaccccctgt aataataacc cctttgccag
     1921 catgctggtt taatccttta attaattcgg aaccgttgac atttaagcca tcggacaaaa
     1981 caaatatgct ttggggattt tgcttttgat gcaatgattt tgataaatga actcctgcct
     2041 cataagactc ttcagtgctt ttaacctctg tttttgccaa ttgaagtttc gttgactcaa
     2101 attgaactac tgcaaccgaa atgctgttat caaaaatatt aggcccaaaa atttctcctg
     2161 cagtggagca tcctatgatt tttgattttt tataggcttg agccaattct tcaattggtt
     2221 tgctgtttgc cctaaagatg gggctggcaa aaactaaaat taaggtattt tcggagtcga
     2281 gttcaggaaa tgttgggata ctccatccct ggttttgaat gtattgaaat gattcaattt
     2341 tcatcatatt gctgtgactt ggatttatct tatgattaat tatagtatat gttcaaaagg
     2401 atcaatgaag tggaggttct gtctattgca atattagtga taaaaatctg ttatatgaac
     2461 ccgaatgttt tttgtgataa agccaattat tttcataaaa gattcattcc tgttaattat
     2521 cgcgattttg ccatttttta aagttgctta gcaggtcatt aatcaagcgg tcactgattc
     2581 tttttttcag ataaaaagca tgaaatgaga ttgttagttc aaggtctttt atttttaaga
     2641 tttttaattt ttctgacagt aaactatcag gcagatagct ccagcctaaa ccgtactcta
     2701 ctagagattt tatggcatcg atagtactca tttcaaaacc caggattagt accagttgat
     2761 ttttttcaaa tagggtatca agcttgtcac gcaatgctgc tcctttctca gttaagatgg
     2821 ccgggtactc tgaaagttct gagagtgaaa gctcggatgt tctatgggca agctcatgat
     2881 ttgctgctac aaccaaattc agtttttcct cccagagcaa acaattgccc aataattttt
     2941 cagatacttc ccgtgccggg cagattacca gatcaaccgt gccgtggttc agaatatact
     3001 cgacttcctt ttcactaatg gttttcagat gcgcttgaat ggtcggatgg gtttccttta
     3061 agtatttaaa aaagcctggc aatacgtagt gagacacata cacggaagcc cctatgatga
     3121 tgctttgcgt gaattgttgc gagtttttca gggtgtgaac catattttga tgtgcggaaa
     3181 gcatttgcct ggcataagga ataagctgct tggctgtttc ggtaaaaatt aatttggaac
     3241 cctcgctaat tatcaaacgt acatttaact cgtcctctat ttttcgaatg cgtttgctca
     3301 tagctgattg agtgacatgc aattttttag ctgccaaggt gagagaatgg tattcgacga
     3361 cggcgagaaa ggatttgatg tctctaatat ccatagaatg cttgcctttt tataagaagt
     3421 atagcatagc ggcactaagc gctttctaaa caaggacggc agatgagtat aatgttctaa
     3481 gcagggggcg agggatcatg cggcatttta aacgagggat acaggcagag aggagcagtg
     3541 aattgaaaac agacaatcat tctgttgatt gccaaaattt atgtgacacc gggttaaaaa
     3601 tttaggagaa ataatctact ttaaaaaaaa ctgtatgatc aaaaaggcca gggttaataa
     3661 aatggaaatc atcgggaaaa caatagggaa tgaaatggcg tttgttggtt tcttttttgt
     3721 cagtttgatt ttaattagcg aggcatgaat gatgataaaa atacacaata tgatactgct
     3781 ggttaattta gccagggttg taatagggag ggcataggca aagagtaaaa taataagaga
     3841 caccagtaag gtcgagttga ctggtgtttg cgttttggaa taaacaaagg agaatatttg
     3901 aggggcattt tgttgattag ccataccata aataagtcgc gaagccataa taatttgcac
     3961 cagaattcca ttggtaatag aaattagtgc aatgattgaa aacaacaagg gggattgtcc
     4021 ctgaagctta ataatttcaa taaggggcat gtccgttttg actaaagcat tggatggtat
     4081 ggtcgaaacg ataacccagg cgactgcaac atataaaatg gttgcggata ttaaagcaag
     4141 aaaaatagct tttggaagag ttttttcagg atttattgtt tcttctgctg tattaaccat
     4201 atcttcaaaa ccaataaaag cataaaaagc aataaaagct ccaataagca ccccatcaaa
     4261 agaatgagga agagagaagg attggatgtc gatagaagcg aatgaataac gaccgtaata
     4321 aataatcatc aataatccac ccacttccat gagcgtcatg tacaggataa gagtcgctga
     4381 ttcacgaata ccccaaacag caactcccgc taaaatgaca gttaatatag tgatgatgag
     4441 agaaggtggt aagggtaaaa acaattgaaa atatttgaca aaaccatggg atagggtggc
     4501 tgccgagatc acacctgtta aaaccacaat ccaacctatt aagccagata gccatttttg
     4561 atggaatgcc ctccgcacgt aaagagcaga gcctgcacta agcggtaacc tggagcttaa
     4621 ttctgcataa gaaatggcag taaaaagagc gatgatggag gcgattaaga aggatagagg
     4681 ggtaaattgt gccgcttctt ttgcgacctc accaacaagg gcataaattc ccgcgcccaa
     4741 tatagttcca agcccataaa aggccagcag tgttaatgat aaagtccgtt ttaagtgcat
     4801 cgccccccca ttttatctgg agatctatag tcgtagaaca agtcttcttt tttgtttgct
     4861 tactttttta tttttcgccg gttactaaat agatagtgaa attaaattga tattcaccat
     4921 tatatttggc ttggcattca ttatcgtaat attgaaccat agcttcgttg attttttgta
     4981 tctcttcatt cggcaattgt ccttgataaa aagcaattcc attgacgaat ttcctgaaaa
     5041 catccaggga agggagggta atggattgtc ggcatagctt tacttttagc tcctgacagc
     5101 ttaacgactc cagttttttt tccagattct ttaagtgaga ataatctacg ggagggataa
     5161 aatcatgcaa ggatgcaaat tgccctgatt tttttaaagc ataataactc atgataaacg
     5221 gatcgtctcc tgctggaaaa agagtaagga attttccccc aggtttcaat gcgttaacga
     5281 tatttaaaaa tgctttttga atattggcac aagcccattg caaacaccaa aaagagacga
     5341 catagtcaaa ttgtaagtgg aagtccattg tgagtacatc ggctttctgg actgaaaagt
     5401 taggatattc cttactcacg tcttgggcta aatgtaacat attctcggaa gcgtctatac
     5461 ctaatacaga gccttgaggc actttcataa gaatgttttt tgtaaaagca ccgttaccgc
     5521 agccgatatc caatactttg tcggcgggct tcatgtttag gtagggtaaa tattcttcag
     5581 ccacagtcgc ttgaatgtaa gatccaatgg catagtcatt ggcgggccac tcacgtcttg
     5641 acatacttat tcctttcttt tgagatggtt atttattcca taattgttca ggtcatcatt
     5701 gttcatcata catcatggac agtccctaaa acagatcatg aattctttta tgaatagtat
     5761 ttttattgag atgaatgact taaatcaagt atagtgagcg ctgtaaaaaa atcaggatgt
     5821 ttttacttca aactatgaaa aggagtcagg tatgttcagc cagagtcagc aaaaaattgt
     5881 ttgtgtgctt tatgatgatc ctaagggggg atttcctcca aactatgcaa gagaatccat
     5941 tccagaattg aaacaatatc ctgatggtca aagtttacct aatcctgatt cgattgattt
     6001 tattccaggt gaaatgctag gttctgtgag tggtgaattg ggactaagac aatttcttga
     6061 aagcaatggg catcaattgg tagtaacctc tgataaggat ggctctgatt cagtatttgc
     6121 cagggagcta aaagaagcca ctgtcgtcat ttcccaacct ttttggcccg cttatttaac
     6181 tcgtgatcgt attgaaagtg cacctaagct taagctcgct atcaccgcag gtatcggctc
     6241 ggatcatgtc gatttgcaag cggccatgga acataatatc accgtttgtg aggtcactta
     6301 ttgtaacagc atcagtgttg ctgagcatac cgtgatgatg attttagcct tggtgcggga
     6361 ttttattcca caatacaata cggtaattga tggcgggtgg aatattgcgg attgcgtcag
     6421 tcgctcttat gatttggaag gcatgcaagt gggatgtgtt gctgcaggcc gaattggatt
     6481 agctgtttta agacgcttaa aaccgtttgc tgtaaaactg cattataccg acaggcatag
     6541 actaccagta cagttggagc aggaactgaa tttgacttat cacccctctg ttgaatccat
     6601 ggtgaaagtt tgtgatgtgg tatcgattca ttgcccattg catccggaaa cagaatacct
     6661 ttttgatgag cgattaataa aacagatgaa acgaggctct tatttaatta ataccgcccg
     6721 tggaagaata tgcgatcagc atgctgtagc ggatgctctg gaatctgggc atttggctgg
     6781 ttatgccgga gacgtttggt tcccacaacc cccagccaaa aaccatcctt ggcgatcgat
     6841 gccaaatcac gccatgacac cacatacatc aggaactacc ctgtctgcgc aagcgcgata
     6901 tgcggcggga gtcagagaaa tattagagtg ttggttaggg aacaaaccaa ttagggagga
     6961 atatctgatc gtgtctcaag gccatttagc cggggttggt tctcattctt atagtgcggg
     7021 taatactact tcgggaactg agcaagcagc agaattggtt tgattccccg tcgcttatgc
     7081 tgtcttatgt ctttctgttt tcattcaaag tagccgctgc ctttaaagac agcggcagtt
     7141 cagggaaaag gggcaaacag tggatgattt aaaatttaaa taaattcttt ggaaggtctg
     7201 gttttaaacc aacatcgtct tggccaaatg aaaagaaacc tggattgtag acagggtgtg
     7261 tttgctcaaa atgctctaga aagtcgtctg cggctccttc gttatcccaa gtgttatggc
     7321 ttgagtctgt atatactgtt tctgtaggtt gattggatgt ttcttgtcta ggttgaggta
     7381 cttcttgttc ctgattctca tattttcttc tttttgtatt ggtatgaatt tctctctccg
     7441 aaacgattga tagatcaaaa taatctctgt gatcaagtag cgaatgaata cagtttgcca
     7501 tgtctttttc agatgatggg tcacgctcta tagtgcctcc ttcccgcact gtatgggtaa
     7561 aacattgacc ttcctgattg attgaaaaat aattgacaag tcggccgaat ctctcaaaaa
     7621 cgtagcctat ttccagttgt tgattaccct ttgataaggg aaaggccaag ttcaaccagg
     7681 gatccattaa aaactgttca ttgactatta gtataaaatg attattaaag gtcgctaatc
     7741 gaagggagtg aattaagctt tctggttttt gtgcctggtg taacagaagt gcaaaaacaa
     7801 aaaaagcttt ttcctggcaa ttaccaaaac cagagcctct gctatacaga gcaatcttca
     7861 gaattttatt tagccaggtc aaatcagttc tttccagagt ttcatcagcg aaaatttgag
     7921 ttagcttaac cagtgaagca tcgtcttcat tatcggtagg taaatcacag gaactgatgt
     7981 tttgtgccaa ttgattgcca agcagaatca gctcccagag ttttttttct tcagcattga
     8041 gatggaattt atcattaact gtccggactt ttgctttaac ttcctgaact tgagaatgag
     8101 taagggcggc atactgattc ggcttttttg ttttttcaga agatttgcag tgaagttctc
     8161 tttttttgga gcgtctttct tgttgctgat taagtgcttt ttctttcatt ttttgaaaat
     8221 cacctaaaag gctgtccata aataattcct gtctattttg atcagtcgct ttggcacagg
     8281 attttgtgaa catgttacac tctctttata atagttaatt acgatatgac aagttgaacc
     8341 tctgatgata atgagctgga ctgctgtaaa aacagagcct ggttcactga gactgctatt
     8401 ttataagtta attattaaga taacattaat ttttgcattt aaattggcct gatggggtgt
     8461 atttttgtca aattgtaagc gatttttgat ttaaaaaagg tataatagat gacaaaataa
     8521 aaaccacctg tggttatcat tggaatattg atgagcaaag aacgaattaa gaaaacagca
     8581 ctggagattg tcaaatacat tcatggcaac ataaaagcgt gtaatatccc caatcaaaaa
     8641 aaagaaaata agttttttgc gcctttggtt tatctctgtc aaacagaatg cgataagatt
     8701 ttgagtaaca ccaaaatcag tttgttggag cgtcttttaa aatgcgcaaa aattatcggt
     8761 gatctgcaat caggaaattg tatgcagcaa acctttttag catttcaacg tttattgatg
     8821 cgattgattg aggataagct atctaatttt tccacttgca ttccaatttc tgttatgacc
     8881 atttccaacc atgccttttt aatcattgat aacgatatcg tgtgtgatcc ctggttaaat
     8941 tttgtgggag atttgaaaga ttattgtttt gcaaacatga aaaggaaaga gtattttgga
     9001 atacgttccg actggacttg ttttaccaat tcagaggtct atgatgaaga ctctactgaa
     9061 tttacaatcc aatttgtaaa tgctttaggg gtagggatat cgggtttcag tgaaattaag
     9121 ttggcaaatc aattgatgca atcatcgagt atggcttctg atcttggaga ggatcctgtg
     9181 atttctatcc ccaaagagtt tcatcgaatt tgatggagcg ctcatcttga ttgtaatgaa
     9241 ctctattgct gttgtttttg ttcaagttct ggttcgattt aacggtaaat atattgtact
     9301 tgataatgat gggggagagg atgaattttt taaacaataa aattgtaatg ataaccggcg
     9361 cgtccagcgg cattggacag gcttgcgccc gactttttgc tgcacaagga gcacgactca
     9421 tcctggcggc acggcgagtt gaacgtttac atgaattatc cagtgggtta aaacatcata
     9481 ataatcaaga acattatatt cttcctctgg atgtctgtaa gaaagatttg gtgagacaac
     9541 aaatcgaatc tttgcccggt cagtggaact ctattgatgt gttaatcaat aatgcgggtt
     9601 tggctctgga taccttgcct ttgcatcaag gaatattgga gcattgggac accatgatag
     9661 ataccaatat taaaggattg ctttatatta gtcggctaat tctcccaggg atgttagaga
     9721 ggaatagtgg gcacgtcatt aatatcggtt ccatagcagg tcatgagtgt tatcctaatg
     9781 gaaatgttta ctcggccacc aagcatgctg ttcatgcgat atcaaagtcc atgcgattgg
     9841 atatgttagg aagtgcagtt cgagtgactg aaattgcacc aggtgctgtt gagacagagt
     9901 ttagcgaggt tcgctggaaa gacaaacagc gagctatcga tttctataag gattttcaac
     9961 cgcttatggc cgaagatgtt gctgatgctg ctttgtattg cgctacaaga cctctgcatg
    10021 tcgatattga gcaaatgatt attatgccaa cagttcaggc ttctgcaaat catttgtcaa
    10081 ggaaaggcag ataatcatca ggtgaataat tgtgcaaaaa tttgccaaaa atggggctgt
    10141 tagtctatta tttaaaatat aggtgatgac tgatcctggc tgaaccagta agtagtgcca
    10201 gattaggagg tcgttttgga gggtggtgtg taagcctaca aagggtagga aacctgaagc
    10261 tctacataaa tctccacagt gtctttcagt tgcggctcag aaaccgggaa gtcgttgcct
    10321 gtacttaaac tcttttctat tctttgtata aactaatttt ttcttatcaa agaatgaatt
    10381 aagtcgaaca gatcatagac aaacccacaa tcgctttgtt aaaaatgttt ttaattcggt
    10441 catttgtttt aattaagctc gctcattaaa atatttttta atgcccctta tggttttgag
    10501 taaatccagt taaagtcaat cccgatatcc tctgtttaaa ataaagagca atttgagcaa
    10561 ttaataatat tatcttataa ttaaagaaca actattttgc caggaagcaa ttatgaacaa
    10621 gttaattgtt gcggtcactg ctggtgcatc attattgctg ctaactggat gtgcggttga
    10681 tggtgtggct attgatgatg tttcttacga atcaggttat agcaatgact acgtttattc
    10741 ggttggctat tatagcaatc gcccctattg gggtaacaac tactattcgt caccttcttt
    10801 tgtaggccct tatggatatt ggggtggaga ttacgatttc taatttccag agaagacaag
    10861 cctccaaacc aaatgaaggc tatttctgtt gataattact ctttagcgcg agacacatat
    10921 tcgcctttgc gcgtgtctac cttaatcagt tcgccagttt gaacaaacaa tggtacacga
    10981 accacggcac ctgtttccaa tgtggctggc tttccgcctc cgccagaagt gtctcctttt
    11041 aatccaggat ctgtttcggt gattgccaaa atgacaaaat tgggtggagt cacctgtata
    11101 ggttcattgt tccatagagt aactacacaa acgtcctgtt cctttaacca ttgtgctgca
    11161 tcggctaata cgttttcagt cacggcatat tgttcaaacg tatctggaac cataaaatgc
    11221 caatgctccc catcattgta tagatactgc atttctacgt cagccacatc agcagatggt
    11281 aaggtgtccc cagatttaaa ggtacgttcc acaacgcgcc cggtttttag attgcgaatt
    11341 ttaatacggg taaatgcttg accttttcca ggttttacaa attcacagtc aagaatgctg
    11401 cacggagcat catcaaccat tacttttaag ccgtttttaa attcatttgt gctatagact
    11461 gccatttctg ctccatagtt gagattttgc tgtattttcg ctaaagttcg cacagtttat
    11521 caagtctgta actttaatgc gagatacctc tttgagttgg caaaaaattt tggcgcaagg
    11581 atttacttca acgactgatt tattagattt cctggaattg ccgagatctg aaggaaacct
    11641 attcgcggaa aaacaattcc caagccgtat tcctttaggt tttgctaagc gaatgcaaaa
    11701 agggaatccc aaagatccct tgcttttaca ggttcttgca aaagaagatg agcttagcga
    11761 agcagatgat tatgttatcg atcccttaag tgagagtaat accctgatta aaggtttgtt
    11821 gcataaatat cacgggcgcg ttttgttaac tttaaccggt gtttgcgctg tgaattgtcg
    11881 ttattgcttt agaagacatt ttccttatca agcgaataat ccgggccgcc ggggatggaa
    11941 agaggtgtgt gcctacatcg caaatgattc cagtattact gaagttattt taagtggtgg
    12001 cgatccattg ctcgccgcca atttggtttt ggaagaatta ctccaatctt tggaagaaat
    12061 ttctcatata catactttaa gaattcatac aagaattcct attgttttac cggagcgtat
    12121 tgacaaagga ttacttgatt tattaacaaa tacgcgattt aagaaagtga ttgttgttca
    12181 ttgtaatcat ccgcaagagt tggatgagag tgtattgcgg gcgtgctctg atttgaagaa
    12241 agcagcatgt tatttactga atcaatctgt tttattagcc gggattaatg atgatgcagg
    12301 gattttatcc aagttaagtc atgctctttt tgattacggg attatgcctt actacttgca
    12361 tttgctcgat aaagtaaagg gttcggcaca tttcgatatg ccgcttctca gggctcagtc
    12421 aatttatcat caattacaat cccttgtgcc aggatattta ttgcctcgcc tggcacgaga
    12481 agagccggga agatccagta aaaccttgct gatttaaaga gcttgatatg ttctgtctat
    12541 ttatggtttt attcaatagc catgtttcca ctgttatttt tctgactaaa tcgatttgtc
    12601 ctcttcctca taaagtgcaa tcagcttttc ctgagcacag ccgccgtttt gcatgaggtg
    12661 cttgtaagtc ccgtcacttt gcatttccca aacattgtta ttatctttaa gatagttttt
    12721 aatgatttcg ttttttattc tttttttaca tccctcatca taaatgggga acatgatttc
    12781 aatacgattg tataagtttc tttccatcag atcggcactg gagcaaaaat agtgttcttc
    12841 ttcgttgatg cgaaaataaa acactctgtg atgttcgagg aatctgccaa taaaagataa
    12901 gactctgatg ttctcagaca caccaggcaa tcctggtttt aaacaacata caccacgtac
    12961 aagaagatta attttaacgc ctgcttgtga tgccttgtat aatgcttgaa tcatcacttt
    13021 atcagttaat ccattcactt tcaggatgat ttcagtatca atgcctcccg tagcagcagt
    13081 actgcattgt tcgatgaatt gtaaaagagt tttttgtaag gtaaatggtg aatggctcaa
    13141 ggcttttaac ttaacaacct ttccaagacc ggttaattgt tgaaaaatga gctgggcgtc
    13201 agaagtaata gtgggttcac tggttaataa tcccaaatca gtgtatctct tggctgtttg
    13261 ttcatgatag tttcctgtgc ttaagtgcac atatcgtttt aatttaccat gcgttcttcg
    13321 aacgaccagc gtcattttcg cgtgagtttt atagcctact actccgtaga gtaccaggat
    13381 ccccgcagca tggagtttgt tagccaattt taagttggat tcctcgtcaa aacgggctct
    13441 tagctcaatg acagcggtta cttctttccc tgaatgggcg gcgttaacca gcgcatcgac
    13501 catcactgat tcagagtggg ttctgtaaag cgtttgatta attgccagta cattagggtc
    13561 tgaagcagct tgcctgacaa aatcaatgac taaatcaaat gcttgatagg gatgatgcaa
    13621 taaaatgtct tgttcgtcga gaatattaaa taaattacgt tgtgatttgg agaacttggg
    13681 atactgtggg gtaaaagcgg gataattcag atcaggtcta tcgatgctgt taatagcact
    13741 catatatcgt tgtaaattaa cagggccatc acaataatag gtgtcttcat gccgcaaatg
    13801 atatttctgc agtagaaagt caacaatttt ttcagggcat ttgttttcaa tttccaatct
    13861 tacgacatgg ccataatgac gggaaaatat ctctctttgc accgctttag ccaaatcgtc
    13921 aatttcttct tctcttaaaa ataaatcgct atttcgcgtc aaccgaaatg aatagcatcc
    13981 gctgatttcc atacctggaa ataaactatt aatatgcgtt ttaataatgg aagataaata
    14041 aacaaagtaa tgggcatctc cacaaagctc ggaaggcaga tgtatcatgc gtggaatcga
    14101 gcgaggagca tgtacgacgg cgtaattgat atttcgatca aaagcatctt tcccactcaa
    14161 tgaaatgata aaatttaaac ttttattgat aagccttgga agaggatggg ccaaatcgag
    14221 agcaataggg cttataacag gtagaatttc atgtttaaag taatgctttg cccataaatg
    14281 aatgtcatca gtccattgat ctgtctcaag aaaatggata ttttctttgc gcaatgccgg
    14341 aagtaattgt ttgttaaaaa tattgtaaag ctgatcgatt aaagcatgag ccttatggct
    14401 tatttggctg aatgcttcat cagcccgtaa tccatctatg gttagcttgc ctgacgacat
    14461 ggcaattttt tctttcaacc cggccacccg aatttcaaaa aattcatcaa gattactgct
    14521 gcagatactg agaaatctca ttctttccaa taagggtacg cgttcatcat tagcaagcat
    14581 gagtactctc tgattaaacg caatagcaga aaattctcta ttaatataat aatctgggtt
    14641 atccagagta gtatccatga ggaactccag gtattttcat ttcatgttca caggcaattt
    14701 agtcaccatg caaagccctt acatctggag ggattttttg ccatgggtaa ccttttaccg
    14761 ctttggaata accaatttga tataactgat tcattctttg agtatcaaac aattcctccg
    14821 agttcgaatc aaactcattt ggaacattgg ccaaattaaa atcaactccc tctataagcg
    14881 cacaaagata gataaaaata acatcggcag ccccctggga tgccgtgaca ctttctatcg
    14941 ctcgcttgcc aattaccaat aacttgggtt tgattacttt gtaatggaat tgattctggt
    15001 tattgcgtat tacataaatt ttaacgtttg gtttttgttt taatttgaaa tgttttttcg
    15061 cggttttgat atcagaacca agacgactta aaaagaccgc aaacgttgtt gagccatcaa
    15121 cgtgcatttc tgtgtagggt ttcccgttgg ccatgacatc aaaataaaca ggcggcatga
    15181 ccacgggaat gctggcagaa gcaagtagaa tttttcggaa taactgaact ctctcggggt
    15241 ttttgcttgc cgcaatgcgg gtcatatccc ataccaccag ctttcgagag taaagattgg
    15301 atgtccctac ataaagccgt cgcccttgat aatagccttt ggcaatgtca tcaagcaatt
    15361 tttcatcgac atgacgagca atcaggtctt gtaatggttt ggttccttta agggcgctgc
    15421 ctcctgttaa cagagtccat aatacaggct tattactcag tacatccttc gtggtaatgg
    15481 ttgtatacac tttttttaat gtagcatcat atttagggcc agcaaaagct aaaggtgcta
    15541 tcaatgcccc agtacttata cctgtcacgg ttgtaaatgt tggtcgagaa ccggattttg
    15601 tccacccatt caataatcca gcaccaaaag caccataatc gccaccacct gaaataatca
    15661 gcaagctgaa agagcctttt tgatggaaca tggtatcagg gtaagcttta gccagttgtt
    15721 ttacacgttc aagagattgc tttttaatta ttgggtcatc actgcgggtg aattcagtgc
    15781 gtacctcttt aaatccaggc actaaggcct tatctgccaa ttgcgcgggg agaggattat
    15841 tttttgctgt attgcaagcg gtttctatac aaagcaaaaa tacaacaaaa aaaatccttt
    15901 tcataatttt cctttaaatt aatgttttcc cgaattttat tcaaaaaatg gattaaaagc
    15961 gatagtgttt gttttcatat taacgcacca caaaaaaaca tatggctata aatgctaaaa
    16021 aaccataaaa gggtgataga ttccaaaagg ccaaggcaag aaaaaacaaa atacagcaaa
    16081 tagccatagg aatagaataa tagacgtcaa taacaccttg aactactgaa aatgtagcag
    16141 ccgctaacaa ggccaaagct ccgtattgga ctgagatcat aattttgcgt gttattggac
    16201 cgttatgaga attaagccac tgatatccca caagagccat aattaatcct ggtaaattca
    16261 ggcagatgat cgcaagaatt aaaccggtta ttccggccgc tttatagcct attagtgcgg
    16321 ccagttttat tcccgttaat cccgggaata aaaaacttga acctaacata cctacaaatt
    16381 cttcttttcc aatccagtgc ctgtacgtga ctgcctcata ttccaataat tttaacatgg
    16441 aattgccgcc gcctaaggat atcaggccaa ttttcccaaa actgtaaatg atttcaatga
    16501 aagtttttat catattttta aagtcttttt taagaaggta acgtattcaa aagaaggttg
    16561 ggttccgaat aaaaggacgc tgatggtttc taccaggttt aatgatctcc cctcaataca
    16621 ggcactgaaa tacactttat ccttgacttc aagacgagca agctcaagct tgacagttgg
    16681 cgttgtaggg aatttaaaaa caaaagcttc ttttttaaca aaaacaacga ttcctttttc
    16741 ttttattttt ttcaatagtt cttgtcgatt caattgccca gcgtcgccat ggcaagggag
    16801 agtttgtggg gtttcaagat gaattttaga tccaaagcct agtgcagagc cagattgctt
    16861 aataacaggt ttatacaata attcgttacg tctttgtttt atattatgat cagagtcagg
    16921 cagtaaataa taatagtctt ctttatgttt tttctgatag ttggctagat caagcaacga
    16981 actgtcaata gtatttaaac ggatgatttg atctgtaggc caaaaatagc gcttttccca
    17041 ttttagattg tcttgagcat catgacctaa agtggtaagt ggtgttgttt gttcagagga
    17101 aaattcaaag ttccaaacca gtctttgcat tattagtatt tcattttctg ttttgcttac
    17161 gctagatgat ttgatttgtt ttggcaaggt taacttaaat gtttcttata atttttaaag
    17221 gattattgct cgctaaataa agcgtaaaaa gtatatactg gttattctat aaacctctta
    17281 ataaaatagc aaaggaaggt attttatggc tattgtgttc tttttaattt atttggcttt
    17341 tactctggta gtactgtcca gaagaattaa tccattggtt tgggaaattg gaagcataat
    17401 ctacctcatt cccgcaacat tttattttgg gttcccctgg attatcggtt tattcatttg
    17461 gttctttatt atagctgccg tgctggtagt tcgagtggag ccattacgcc ttttcatcgg
    17521 ggattatttg tataaaaccg caggaaaatc ggtgcccaag ctctctaaaa cggaagaaga
    17581 agctttaaac gcgggggata cctggctgga acaagatatt tttacaggaa aacctgattg
    17641 gcaaaaatta tcagcagttt ctacagagct cacagcagaa gaacaagctt ttttggataa
    17701 tgaaactcat actttgtgca gtatgttgga tgaatgggaa attagtcagg aatatgattt
    17761 atctcccaag gtttggaatt acattaaaga gaaaggattt ttaggattag tgataccaaa
    17821 ggagttcggt ggcaaagggt tctcagctcg agcccattct gatattgtaa tgaaaattgc
    17881 cactcgctca agagtagcgg cagtgacggt aatggttcct aattccctgg gcccgggcga
    17941 gctaataaat tattatggaa ccgatgagca aaaagcatat tatcttccac gtcttgccaa
    18001 aggtgttgag attccctgtt ttgcattgac agagccaggg gctggaagtg atgcgacctc
    18061 catccagtca gaagccattg tagttaaaaa gaagatagat gggaaatcag tacttggctt
    18121 aaatatcacc ctggataaac ggtggattac tttagctcct gttgcgactt taattggatt
    18181 ggccgtgaac ttgaaagatc cggatgggct tttgaatggt gaaggagagg aaggcataac
    18241 ttgcttgctg attccaagag atactaaaaa tcttgaaatt ggcaataggc atttaccagc
    18301 tgatcagccc tttatgaatg gaactttacg cggcaaagat atttttgtgc ctattgatac
    18361 catcattggt ggtcaaaaga aagcgggatc cggttggcaa atgctggttg agtgcttatc
    18421 tatagggcgc tcaatatctc tgcctgcact tggagcaggt tcttcttcta tttcttattt
    18481 aacaacaggt gcttttgcca gaattcgtcg ccaatttaat gtagaaatcg ctcagtttga
    18541 aggagtagag gaaaaacttg cagaaatagc gggtttgaat tatttaatca actctacccg
    18601 gttgttgacg gttgctgcag tgaatgaaca taaaaaaccc tctgtagctt cagcgattac
    18661 caaatatttt aatacggaat tggcacgaat cactgtgaat gcttctatgg atgttcatgc
    18721 tgggcgagcc attgttgttg ggccacgcaa ttacttaaat agtttatatc aaagtgttcc
    18781 tatttctatt acggtagaag gggctaatat tatgtctcgc aatttattga tttttgggca
    18841 gggatctatg gcatgtcatc cgtttattcg tgatgaattc tacgccatct ccagtgagaa
    18901 taaagaggca tttagagaga taatttggaa gcatattcat tattttatgc agaattttgc
    18961 taaaacaatc tgttcagcat ggacaagtgg tttgtttatt gcggttcccg aaaattcaat
    19021 gaaaagagag tataagaaac tggcgcgttt gagttatgcc tattcctggc ttgctgatct
    19081 gtctttaatt tatttgggag gtgatttaaa gcgcaaggag cgattgtctg caagattggc
    19141 tgatggcatg tcttatctct atatggcaat ggctgcttta cgaaatgtgc aattaaacca
    19201 agaccatccc gatgagcaat tgcatgccag atgggcggta agctattgtt tttaccacgc
    19261 gcaaaaatcc atgattgcac tttgtcacaa tttcccttcc aaatttttag gctttattgc
    19321 ccgagtagtt gcgtttccat ttgggcaaac catgcgttat ccttcagaca aactagatca
    19381 tcagttggct cgtttgatga cgggcaacaa tcattatcgt gaccgtttga aaaaatcggt
    19441 ctttctcagt ggtgatccca agcagcctgt agatcgtatg gaacatgctt tacagcttat
    19501 tattgaagcg gatggattaa gcaaaaaagt gagtgatttg aagcgctata agtggagtaa
    19561 gttgaaagag aagttaaaag aaaaagtaga gtctggccag ttgtcacaac aggaaatgga
    19621 agagttgctt gctgttgaag acgcacgttg ggatgccatt ttagtggatg aatttacctt
    19681 cgactccatg aagaagaaga cattgcattc cgtgatagaa aaaatgaaat ctcccttggc
    19741 gtgattttta cagactttta acatcgattt accaaccagc tatcaatcca aatgaggctg
    19801 gtttgctata attaaactat atttcctgga ccaaatatac attgttgaga gtaagttatg
    19861 ccaaaataca cactgcccac aagagatgcc ttattaaaag cgatgcaagt aggtgaaaca
    19921 tccattgaag ccgctgaata catggcaaca aggtttgagc agattttaac gaaagcgaaa
    19981 ttattaccag aatgtaatga tatgctggaa aaaataaaag aatatgctca attcgttaaa
    20041 ttcaaattat tatcctctgc tcaagtttgg tctggccaag aaaggccaac ttcagattac
    20101 caaaacacgc aggaaaacaa agccgaattt ttggcaagcc atttggaagg gttaccaagt
    20161 ggattaaaac tcgaagttgc tattggagac gatgccaaaa tattgcgagg gttttcttct
    20221 aatggaaaaa tggtagaagg agatcagttg aaaaccatgg atggattatt agaaggatgg
    20281 cttgccaaga atagtcttgc tatttcagga ggtgcggttg ttaaaataga caatacgggc
    20341 aaccaaacca aagtagatcc acaggaaatc agacaattaa tcaacgatag cgaaaaggga
    20401 gtcgccaaat attttgcaga taaaggcgtg ggcatggaag tggcgcaacg aacctaccaa
    20461 gaacccaaag cattggaaac caagcgagaa gaaatcagac aagaaattga atccggtgct
    20521 gaagctccaa ccactcaatc catcagatag gaatatactg gttcacctaa aaaccaatct
    20581 tggtttttag gtgaactgat ttgctgcctg cagtctatcg aaagagccta tgtcatacca
    20641 aattcctgag tgaacacttc cagtggcact attttgttcc acatattttc tgagtaaagg
    20701 ggtaacagaa taccttcctt gtctgcagtt ggcaaaaacc tttgggttat agcaggcaat
    20761 acctgaaaaa gtgtaagcct gatttgtatt ggttaagtgg gatccattga ttaaaccaaa
    20821 atcgccatga tgaagcaaag aaggattttt gggaattaaa agcagatgaa atgtatcaat
    20881 atttttgagt tggagcttgg caaaatcaaa atcagtataa atgtcggcat ttactgttaa
    20941 aaatggctct tcgcccagca aaggcaaggc gttcacaatc cctccccctg tttcaaggcc
    21001 tcctggcggt tctggagaat agataacatt taagccccat tgttttccat ttcctatata
    21061 ttggcgaatt tgtccgccca ggtaggcatg attgattatc aatcgttcaa agccggcatt
    21121 ggcgaggtta atgatatggt gttcaattaa gggtttgttt cttaccgtac aaagtgcttt
    21181 aggcattttg tcggttaaag ggcgtaatcg ttctccacgt cctgctgcaa gaatcatagc
    21241 ggttttcatg gtaaataaac tcgtttttgc agaaaattaa aaaatgggtg taattcttca
    21301 tatgtttctg cgcattctaa tgcatatttt aacgtgagag gcaagtcccc aagatatcct
    21361 gctttattat cacgcaaata taaacggcaa aaaacaccta acacttttaa atgcctttgt
    21421 aacccacata gatcaaaggc ccggataaaa tcggttagag agtaaatact ggcgaggggg
    21481 gattgttcat gaaaataggt tacccattct aaaacttttt ctcttggcca tgaaatataa
    21541 caatctttga gtaaagaaac caaatcatag gtaacaggac ctagcatagc atcctgaaaa
    21601 tcaatagttg ctaaacagct gtccttattt ttgactagca tcagatttct tgaatggtag
    21661 tccctgtgaa tgaaaactct tggttgagtc gctacttcac ttgcgatcca ctcgatggta
    21721 tgctgaaaaa gttgtaattc gtcttgtttt aaatcaagag aaaggtaagc tttcaaaaac
    21781 cattccaaac ataaattcat ttctttaagc atgaaacttt tgtcaaataa gggaagttca
    21841 ggatcgtcag tgggacattt ttgaatttgt aatagcaaat tcattgcctg gttataataa
    21901 ttatccactg tttcatgatt cagcttattt aataataatt gatcccctaa atcgcttagt
    21961 aacaggaaac cttctctttt atttattgcc agaatatcgg ggactggtat tttaatttta
    22021 tcaagaacgt tagcgatatg gaggaaaggt tcaatatttt ccttttcagg tggggcgtcc
    22081 ataactactt gagttaatcc attatattga atgcgaaaat accttctaaa actcgcatct
    22141 cctgctaaag gaaggaggac aaagtctttt tgttgaatcg tttgagctaa ccactctttc
    22201 agtgcgtttt ctctttcatg catggtatac ttcccgtttt tatttacaga gtgcggttga
    22261 tatactccca tcttaataaa gagtaatttc attcgcgcac aaataataag gtattttgtt
    22321 agctgtgaac atgaggtttt ataaaaagct aattatatct ggttttattt catttatcgc
    22381 cttattgcga ggtttactct attgccattt aaaaagatta tttaaaaaat ggcctgaatc
    22441 tttattttca gtgaaatgga tcttaatggc catagggata actgcttgtg ttttatcttt
    22501 gataaattat caaggcttag cctactctgc tgccttgata aatgaaccta ttcaagcttg
    22561 cgtgattgcg cgagaagtcg atttaacaga cgatataaga actaaatttg cccaatgttt
    22621 gggttggcaa gctgatcaaa gttctcctgt gtgcctcggt ttttataaac ccattgcagt
    22681 gacaccgtta gctagtccag atgaagtacg tattctggca gatacggctt ccttctatcg
    22741 cactcaaaga tccactttat ctgggcatgt agaaatgcag cagggccaaa gagtagttaa
    22801 cgctcaaaca gcctatgtgt acagggatcc taaaacgaat gaagtaacaa aaattgaatt
    22861 tttgaatcat gtacgttatt tagaacctga tagaatgatg atcgctagaa aagcagttgt
    22921 gtatcctcaa gataaatcgg gtgaagtgga agatgttctt tatcgattta ataccaatag
    22981 aagcaatgca ttgctgcctg cctggggtag ggcaagttta atcaagcgtt ttgcaaatca
    23041 ggactacttt ttgaaagagg caacttacac gacttgcgcg cctcaagata aggcttgggc
    23101 tatcgaggcc gaatccatca gtatagacaa cgaaaaagga aagggcattg ctcgcaatgc
    23161 caaattacgt atccacgaat ggccggtgct ttatacccct tatttaagtt ttcctaccaa
    23221 tagagataga aaatcggggt ttctgatgcc catagtgggt tattccaatg tagggggggc
    23281 tgatttgggc atcccttatt attggaatat ggcgccaaat tatgacatga ctctcgttcc
    23341 tcacctttat acaaaacgcg gtttgatgtt gggaggacaa tttagatatt tgacctcaaa
    23401 gagcactgga acatttaatg gaaatttttt accaaaagat aaagcctttg gcaggttttt
    23461 acaggacaat gaggtagagt tccctcagat tcgaggactt tccacgaatc gttgggaagt
    23521 aaattttgtc gattcaaccc aatttctctc tgatcttcaa ttaaatgtta attttcaaca
    23581 ggtttctgat gattattact tgcaagattt cagtacaaat ttggcatcgg taactcaaag
    23641 acaattattg cgccaggctg atttaaccta cactaccgaa aactggactt ttagaggtat
    23701 gggacaaagt tatcaaacgt tacatccaat taacgaaatc ccggtttccc ctgtttatga
    23761 acggttaccg caacttatgg cacgaggtta ttatgatgat ttacctttta atgcccaatt
    23821 caacatcctt ggtcaatacg accagtttca ctggcctaat gactcctgga atatagcact
    23881 taataatatg cctcaggggc cccggtttca tctgaatccc attttatcag tgccaatgat
    23941 gaagccttgg ggatatgtta ctccctcagt gcaatttgtg gaaaattatt acgatatttc
    24001 aagaaattat acttggggca catctcgagc taactataac ctgacaatac ctcgctatag
    24061 ccttgatggc ggattgtatt tcgaacgaga tttgcatctt aagggtacgt attacataca
    24121 aactttagag cccaggttat tctatttaag agtaccttat tataaccaaa cgcttattcc
    24181 agtttatgat tcaggattta tgatttttaa tgtcgatcaa ttgtttagaa ccaatcgctt
    24241 ttcagggttt gatagaatcg gagatgccaa tcagctaagt tatgccctta ccacaaggtg
    24301 gttagaagat gaatcaggtg ctgagaaagc gaatttttct attggccaaa tcaaatattt
    24361 cagtgagaga agagtacaac tttgtcaaag ccctaccggg ttttgtaccg ataatccaga
    24421 tacctttggc aacttatcgt ctacttttgg aacatcgcct gttgcgtcaa gggcggtata
    24481 taaatttaat ccagcttggg gaataacagg ggattacatt tgggatccgg caacaagggc
    24541 tacaaataat gcggatttga atttgcacta tcagccagct cgtaatgcta tcatcaatgg
    24601 cgggtatagt tatttggtta atggtgacgt tactcaagta agaaataatg acactgaaaa
    24661 taatgcctta catcaagcca ttttatccgc tgcctggcca cttagtgaaa aatggagtgg
    24721 tattggagcc tatagttata atatcagtaa aaattacagt atgatgtcat ttcttggcgt
    24781 tcaatatgat agttgttgct gggctatgcg tattttggga gggcgaattt ttagaagttt
    24841 aaatgaagaa tttgagcctc agtacaataa caacatttat ttgcaaatat tactaaaagg
    24901 cttaggatca gtagctagca gtgatccaag tggtatattg aatacctata tcccaggata
    24961 ctatgaccct ttccgacgcc gttaaaatcc aaagataaat gacacaataa aagcgagtca
    25021 ggtttaggtg tttaggttag tacaggttga aaatatttta atctgttttt tataaattat
    25081 ggtgtaaatt aagcaaaatt gcttgtattt tgacaaagaa taacataaat tgcccgaaaa
    25141 atgtgaatga ggattatggc atgtttaaaa gaatagcatt ggtatgcgct ttgttttcag
    25201 gagtatgttt cgctgaagga aagcagctgt tagataaagt ggttgctata gtaaatgata
    25261 atgtcattac ttccagcgaa ttgaatgctc aagtcgagtt atctaaaaag cagattatag
    25321 ctcaaaatat gcaaatgcca gatgagtctg tattacgtaa gcaagtattg caacatttaa
    25381 tagacgtaga tctggaaatg caaatggcaa aacaaaatgg tattactatt gaaaatgctg
    25441 aaattgatga agcgatagaa aaaatagctg cttcaaatca tctaaattta tcgcaaatgc
    25501 gcgatgaaat tacaaagcaa ggaattagct ggcaagaata cagacaaaat atccgtaaag
    25561 aaatgctgat ttccagggtt cagcaaaaag cagtaggtaa agatatcatt gtcactaatg
    25621 agcaggtgga acaatactta aaaacttcag gccgcataga aaattctaac ttgacgtatc
    25681 atttaaaaaa tattgttatc cctttaagcg aagaaccaac gaccaaacag cttcaaagag
    25741 ctaaaatcga agcagaaaac ttgttaaata aaattaaaaa aggtgaagac tttagccgtt
    25801 tggcaataga agaatcaagt ggagagtttg cactggaagg tggtgatttg ggtgagcgtc
    25861 atttggctga gctgcctgag gtatttgcca aggaagtagt acatatgaaa gtaggtcagg
    25921 tggccggccc gataagagca ggaaatggat ttcatttgat caaattagta gctgttggcg
    25981 gcgagaatca gcgtcatgtg atcactcaaa cccatgtcag acatatactg cttaaacccg
    26041 atgccagcat ggtgccttct gaagcaatta agcaagtcaa taacatttac cggcaaatac
    26101 agtcaggcaa agattttgct cttatggcta aacaatattc actcgatgct gccagcgcag
    26161 tgaaaggcgg tgatttagga tgggttaatc caggtgaatt agttccagag tttgaaaaaa
    26221 ccatgaacag tttgccatta cataaagtca gtaaacctgt aaaaacccag tacgggtggc
    26281 atctcattga agtgattgca cgcagacaga aggatgattc agaagctttt aagaagcaac
    26341 aggtcaggca atttctacaa cagcgcaagt ttgtagaggc agtgcaaaac tggcaacaac
    26401 atttgcgttc tcaagcttat attaatatag ttgataagga tttagcatga acccactgct
    26461 tattagtagt ggagagcctg ctggaattgg cccggactta tgcctggctt tggcagaaac
    26521 cgatttgccc gtagtgatat tgggtgatct gtctttatta gaggcaagag ccagtgagtt
    26581 aaatctcagt attaaatttt tagagtacag ccctcatcaa agcttcaaaa aaaaagcagg
    26641 atatttaact gtatggcctg ttccatgcgc tgcaccggtc attagtggtg aattaaatcc
    26701 gcaaaatgcg gcttatgtta tggagctttt gactttaggg gcttcgctat gctccaaagg
    26761 ggagttttct gcattagtga cagcgcctgt tcataaggca aacattaatg cagccggtat
    26821 tacgtttact ggccacacgg agttttttgc tgatttcttt gaggtggaaa cagtggtgat
    26881 gatgttggcc tgttctcaaa tgaaagtggc attagtcaca acgcatcttc ctctgcgtat
    26941 ggtgcctgat gccattagct ctttgcttat cataaaggta attcaacaat tacatcattc
    27001 attaaaacat gattttggaa ttcaaagtcc aaaaatcaac gtggctggtc tgaatccgca
    27061 tgctggagaa tcaggatatt taggtcgaga agaaattgaa attattactc cagcattaaa
    27121 tactctaaaa aaccagggga tcgatgtgtt agggccgtta ccagcagata cgatgtttat
    27181 aacaaaccat atcaatcact gtgatgctta tgtggcaatg taccatgatc aaggactgcc
    27241 agtcttaaag tatgctggat ttaatgaagc agtaaatata actctcggat tgccgataat
    27301 tcgtacttct gtagatcatg gaacagcatt agaattagct ggtaagaaca aagctaaccc
    27361 tgggagtatg cttgcggcgg ttaagatggc gaaggatatg gctttaacaa ggataaaatg
    27421 aaatgtctct gattagcctg atagcagcca tagatgaaac aggaggattg ggtattaaca
    27481 accaattact ctgctatttg ccagccgact tacagcactt taaatcgatt accatgggta
    27541 agcccattat catgggcaga aaaacttatg aatcgatagg caaacctctt ccaggcagac
    27601 taaatattgt gattagtcaa tcgattcagt caatacctgg tgttgttgtt gtcgattctt
    27661 tgggccgggc cataaaagag accgctgacg catcagaggt aatgatcatt ggaggagcca
    27721 agatttattc tcaagccata tcaatggcta atcgcttata tattactcga atacaccatc
    27781 aatttacggc tgatgtattt tttccaaaaa tcaatgaatt ggcatggtgc tgccgaagca
    27841 aggagtatcg acagcatgat gacaaaaatc aatacgatat gacgttttgc gtatatgaaa
    27901 gaatatcaat ttgatagcta tcaataatga taatgtctgt tttgtgaggg atgtctatgc
    27961 actggtggct gagtccttac aattatttca gttggtctgc tcagtattct ataattgtcc
    28021 gttataattt cccgaccacc ataagaaata ttacaatgtg agtaaccagg ccatgttttc
    28081 cctggctgaa tacttccatt gaagttactt tgacagacaa ataaaggatt accattggta
    28141 tccttaccca ttaacaatgc atgctctacg ttgggttccc agctgtatcg cccaaattca
    28201 ttttgattcg gtatggtaaa ctggctaaga acgtattctt taccaccata aggtacgttg
    28261 catcgaccat atcctgccca tgtttttccg ggctgtatac tgttaaacag ttttgcccta
    28321 cacagataca atgcattgcc attcgtgtca gttccagttc gtaacgcatt agctaacggt
    28381 gaaacaggat gttgatggta atgagtattg gcccaggcag gattaagaaa gaatatcatc
    28441 aataaaaggt atacaagttt ggacatatca actctctaaa gatttaaaga gccgcaagca
    28501 taacgcaaga aaaaaatatg cgcaagatga atacttaaag atcgatatgg tttatctatt
    28561 gtaacccaaa gaaaaacaat t
//
LOCUS       DACVWI010000019        28090 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.019, whole genome shotgun sequence.
ACCESSION   DACVWI010000019 DACVWI010000000
VERSION     DACVWI010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 28090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28090
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.019"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            146..1213
                     /gene="dinB"
                     /locus_tag="JBH85_03080"
     CDS             146..1213
                     /gene="dinB"
                     /locus_tag="JBH85_03080"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HAU0945174.1"
                     /translation="MNPIRKIIHIDMDCFYAAIEMRDFPELANKPIAVGGDAKRRGVI
                     ATCNYAARQFGIRSAMPTAHALKLCRELILRPVRMDVYQKESQYIRSLLTEYTDLIEP
                     LSLDEAYLDVTESTQCQGSATWIAEEIRARIYQARQLTASAGIAPNKSLAKIASDWHK
                     PNGQMVIRPEDVSAFVLDLPVRKLFGVGPKMEEKLRALNIKTCADLQRYSIEYLLQKF
                     GTMGQRLYELARGIDNRPVNPERIRKSISVEETYPKDLPNSEACLAVLPDLMARLEAR
                     IQRAGKISGIHNLFVKLKFNDFQQTTIERVMDKLDLIVLRQLIQEGFARRGMPVRLLG
                     IGIKLKQENTYQSVQLPLLDL"
     gene            1454..2338
                     /locus_tag="JBH85_03085"
     CDS             1454..2338
                     /locus_tag="JBH85_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HAU0945175.1"
                     /translation="MMQPFIIDEKLVCRLIASQFPHYSNLPVKPVAVGGWDNRTFHLG
                     KDMLVRLPSAEQYELQVEKEQQWLPQLASLLPVPIPTPLAKGMPGEGYPWKWSIYRWL
                     EGETIVSANLSNLNEIAKDLATFLTAFHQIDSSGGPKPGMHSFYRGGDLKIYDPETRQ
                     AIDYLKGKIDTDHATEIWETALNTSWQGTPVWVHGDISAGNLLVKNGKLCAVIDFGQL
                     SVGDPACDLAITWTLFAGDSRKIFREMLALDKGTWFRGQAWALWKALIVAAGIVNTNA
                     MEVQKSCHIINELFLTEL"
     gene            2480..2800
                     /gene="sugE"
                     /locus_tag="JBH85_03090"
     CDS             2480..2800
                     /gene="sugE"
                     /locus_tag="JBH85_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HAU0945176.1"
                     /translation="MLLPWLYLIIAGLLEICWAVGLKYTDGFSKWQPSLFTATTLIIS
                     MFLLAKAAQTLPIGTAYAVWVGIGSLGTAIMGILLFQEHLSVFRLLYLVLMLISIFGL
                     KYTA"
     gene            2827..3600
                     /locus_tag="JBH85_03095"
     CDS             2827..3600
                     /locus_tag="JBH85_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HAU0945177.1"
                     /translation="MLYDGPLIIPCALTMKISRLKTFWIITRLFYYTGVACTRSIFKY
                     LFSTPTRPWVDKVIHHWVDQLLNAVKVEYKVINPHNVQPQPGKATILMCNHSSAYDIP
                     LGFKAFPNNSIRMLAKRELSKIPLLGKGMAAAEFPFIDRKNRFQAIKDLEFAQQLMES
                     GIILWIAPEGTRSKDGKLAPFKKGGFITAIQAKATIIPIGIRGAFDILPARTFNIHLN
                     QKAEIHIGEPIDAAQYSIENKEELIEKTHQSIKKLVGEN"
     gene            3811..6027
                     /locus_tag="JBH85_03100"
     CDS             3811..6027
                     /locus_tag="JBH85_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAU0945178.1"
                     /translation="MSINKIEEDRDISSDLEMKAKMYLVHRMDKAGPLTVKDVRILIN
                     KLSKDLQKNQLTLIDCQLIINLVESRFTLVKQATRYLQFFLNKLDGKSINPILIPLSN
                     KPFWQNEPHPFDHYRSTDQLPEKVDIVIIGAGLTGASTAYHLIDAVKKRHLTVVLLDK
                     GNPATEASGRNGGNFELLPENSVGIYSGLVSERFRFLKRCYPHVHPSILQIESEYHAS
                     LVFQFALKNRNRFKEIARKERIYCDLAAKGWLYIAHTEEEEQAICDEVTLAAQHGERI
                     YIWSRKKIREQFGINSKFIGRFIPDDGTYNPFKYTCCLIKAAIKSGIKLYTFVKVQQI
                     KSIDTEYHQLKTNMGLLKARQVIVATNAFTSELLPELRAIKPHQSQIAITDSTPDYCK
                     GRLITSEDGPLYLNQPRVRSKNGLVPLLIGAGDDRPMKNPYYRKRSKKVHDLIVQQRD
                     KYFPNLKGRPFSTEWVGALAFTPDQLPAIGYLSPGIIIVMCCNGYGGSYTTAAGLAAA
                     EIALTGKNPPWLPADVFSPKRLLSDKPLFWEDSDSLWRIGKTLCTTLNNLNQLLAESL
                     SYQSMYQPYSTISLLPHGHQEKNCNLDPLRVMHQLAIFRTFAYQELEMLIRYTSPVCL
                     SKGEILFKQGDAGHSCFILIQGKINLYYEHAEGFTSMVAELEAGSVFGQMALFLENKR
                     MATCQATENCSMLEIMVEPCKSLFIQQQALGIKLLRLLNQGVIDALHKLNKRLKYT"
     gene            complement(6125..7849)
                     /gene="ggt"
                     /locus_tag="JBH85_03105"
     CDS             complement(6125..7849)
                     /gene="ggt"
                     /locus_tag="JBH85_03105"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HAU0945179.1"
                     /translation="MKDHYKWLSCLFFFICNIYQVNAKTFPQHPPGYAVASAHPLATH
                     AGLEILAAGGNAFDAAVAVAAALAVVEPYHSGLGGGGFWLLHQEKEHLNLFIDGREVA
                     PLAASKDMYLAPDGQVIPGLSLNGGLSAAIPGQPAALVYIAKNYGRLPLSKTLAPAIK
                     LAEEGFPVDPQFRYFSTLDDRLENLKKYPDTAAIFLKNGQPFEIGEKLVQKDLAKTLR
                     LIAKYGNAGFYSGETASLLVQGVNAAGGTWSLDDLAQYKIKVRPPLISAYHNMLIITA
                     PLPSAGGVALVTMLNILSKFPLSSFPKLKWVHYVVESMRLAYWQRDQFLGDPDFIKVP
                     LDKLISSDNAKQLSRLISPNKAIDSKVLQGSVPTGKHSNTSHISIIDTEGNRVAATMT
                     INYIFGSSVVAKGTGVLLNDEMDDFSTKVGEQNVFGLVGSERNAIEPRKRPLSSMAPT
                     FLEMPGRVAILGTPGGSRIPTMVLLASLLFYDGYGAISMVSAMRFHHQYLPDVLQFEP
                     DTFPSSIQQGLQAMGYHLMPLKQYYGDMQAITWDKESNVLTAASDPRHIGLAAAISNM
                     AYGYGVNY"
     gene            complement(7833..8432)
                     /gene="coaD"
                     /locus_tag="JBH85_03110"
     CDS             complement(7833..8432)
                     /gene="coaD"
                     /locus_tag="JBH85_03110"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HAU0945180.1"
                     /translation="MSNVLSHSLLTSIPFFYSFSIYNTLDCFYMQMVINEMKQKAIYP
                     GTFDPVTNGHIDIITRASTIFPELIVAVASNKNKRPYLSWESRISLLEESVGHLTGVR
                     VVGFDNLLIDFVLEQNAGIILRGLRAVSDFEYEFQLAGMNRKLSKKVETLFLTPAEHL
                     MYISSTLVREIAALNGDISQFVPPNVVRELKKRQNERSL"
     gene            8408..9007
                     /gene="lolB"
                     /locus_tag="JBH85_03115"
     CDS             8408..9007
                     /gene="lolB"
                     /locus_tag="JBH85_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein LolB"
                     /protein_id="HAU0945181.1"
                     /translation="MNAIKRLTIILICFLTACAPPRPSEEPPANREIPLEERKAETAT
                     VSSWEIKGALAAKTKAKGWSATMNWVQQGANSYQIRLMGPLGGGAVLISKKGNTITFQ
                     DGAKITTSTNADELLLKQTGIRLPVNNLYYWVRGLPAPGGIQSEKHDQFNHLIQLKQN
                     GYTIDFTKYTSVKGIDLPSMIRLEGNGVMVKVVIKNWVV"
     gene            complement(9009..9179)
                     /locus_tag="JBH85_03120"
     CDS             complement(9009..9179)
                     /locus_tag="JBH85_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945182.1"
                     /translation="MQGSKPCALPLGDTPIIVDSSIIHEFINSIHPCNVLRILQCFFI
                     DVNFRKQINYKN"
     gene            9135..9209
                     /locus_tag="JBH85_03125"
     tRNA            9135..9209
                     /locus_tag="JBH85_03125"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9167..9169,aa:Gln,seq:ttg)
     gene            9235..9423
                     /locus_tag="JBH85_03130"
     CDS             9235..9423
                     /locus_tag="JBH85_03130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945183.1"
                     /translation="MKLNLGTSKQTAEDNLEGCVLRIAQIIIISFWLSSAMCLSYVIN
                     LNLRLLTHVHDDDFYREC"
     gene            9389..10336
                     /locus_tag="JBH85_03135"
     CDS             9389..10336
                     /locus_tag="JBH85_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HAU0945184.1"
                     /translation="MSTMMIFTGNANPELALKISSHLQIPIGKATVGTFSDGETMVEI
                     LENVRGKDVFVLQSTCAPANNNLMELLIMADALRRSSAGRITAVVPYFGYARQDRRVR
                     SARVPITAKVVADMMASVGICRVLTVDLHADQIQGFFYMPVDNVYSTPVLLEDITKQK
                     LNNIMIVSPDVGGVVRARAVAKRLNDAELSIIDKRRSGPNKSEVMHIIGEPANKNCII
                     VDDIVDTAGTLCTAAHELKKNGAKSVRAYITHPVLSGPAVNNIKHSGLDEVVVTDTIP
                     LSAEAQNCEKIRVVSLADMLAQAIKRVNVEESVSSMFAE"
     gene            complement(10398..10679)
                     /locus_tag="JBH85_03140"
     CDS             complement(10398..10679)
                     /locus_tag="JBH85_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HAU0945185.1"
                     /translation="MTTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLE
                     EIETPLFRAVMEHCKYNQSRAAIMLGISRGTLRTKLRRYFDDKYVGTRD"
     gene            complement(10869..12353)
                     /locus_tag="JBH85_03145"
     CDS             complement(10869..12353)
                     /locus_tag="JBH85_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HAU0945186.1"
                     /translation="MQINNMEIIMKKLTGLVIILAVLILGGYYGMGILTERTVKKTVE
                     VINQSNGLFADIQQYKRGWFCSDALVKWRLHVPERVVKDDDGKLQTTPAQDYQMEMPI
                     KIYHGPIIYANKQLRFGMGFAQTVFPFPEKYNQQFNELFSQDSEKPQLDLSIFVNYLN
                     KSTVELSIPSFKLTAKDGNGKFNWMGMDSTTSMSSNLDKVEGEIEFDGAEFSKDDTKL
                     SLGKVNSEYDLHKTTTGLYLGQASFSLPSLAVVVKDQKMFEISELTLSSSSDIDDNLF
                     STHFSAALKSLFANGQNYGPGEVEMSLRNLDAEVLAKINEQANAMQRGTDQERQQALM
                     AMLPELPKLFSKGAEFEISKLSLKLPQGMIDGNLLITLPKGDSSNPFELIQKTQGNAK
                     LKMPIEVVKQLMQQSIMQQMAKQPEMQQALIQQLQNSQGQSNQAEPTPEQIAAMQVDK
                     QINELEQSGLITVDGKDYVIEMSLSEGKFTVNGKPFDPSMMKFQ"
     gene            complement(12556..13839)
                     /locus_tag="JBH85_03150"
     CDS             complement(12556..13839)
                     /locus_tag="JBH85_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945187.1"
                     /translation="MGISKVEIYKRKNYLGFAWLVWGLAAAFYFSDYLARVAPGVMHR
                     YLQMDFGINEAGFGILTASFYVPYILMQIPVGLTVDRLSIRWLLTIMSLVTAFGCCVF
                     GLADGLLTASIGRMLIGFSAAFAFICSLRLATSWFPPTMLGLLSGLTQALGMLGAAAG
                     EAPVSFLVSNVGWRHSMLIIAFLFIALSGLLYQFVQDKPGEHRNEIRSVNRISILDSL
                     KIILSNKQTWLNAMYAGFLFGPTAVIGEAIGPAYLQFGRGLGAHAAAFATGLIFIGWG
                     ISGPLSGWISDKMGRRKPLMIISAVCGVILSSLFVFIPEMSQTTAYILFFVFGLTNTG
                     VAISYAVSTEIHDRSVVGTSIAFTNMTSIFVGALFQPLVGRIIDMVSGPRAYNVETLL
                     LSDFQAGLKLLPLCSLVALILAFTVKETYCKPIRH"
     gene            14489..14878
                     /locus_tag="JBH85_03155"
     CDS             14489..14878
                     /locus_tag="JBH85_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SseB family protein"
                     /protein_id="HAU0945188.1"
                     /translation="MNKLNIAIKEAFESSGSSKEANKVYLEFIKANFIIPIESNSDDS
                     EPRVLFLEENNHVFLPVFTDMKYLDAWASEISQHIKLLKLSGVDLLKGLGEKVTVCLD
                     IGSELYKEFNPSEIERMRSMVLKLFKN"
     gene            complement(14949..15320)
                     /locus_tag="JBH85_03160"
     CDS             complement(14949..15320)
                     /locus_tag="JBH85_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transmission trait enhancer LetE"
                     /protein_id="HAU0945189.1"
                     /translation="MNDTTSLLSHLRLRFNIEHPSYEECYIFGYECALAEVPEEDNPF
                     REGSQEAEQWLEGWWAGIYGEKPLFDLNNIEEDILLDKTTAANDQQYHHKNSFLSLVF
                     EIGGAIAASAIVGYQLLELVA"
     gene            complement(15933..16580)
                     /gene="pdxH"
                     /locus_tag="JBH85_03165"
     CDS             complement(15933..16580)
                     /gene="pdxH"
                     /locus_tag="JBH85_03165"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HAU0945190.1"
                     /translation="MSKFRSLADIRRDYGELQLSEESAENDPISQFKLWFDDVLLNEK
                     NDPTAMVLSTVDEKGYPDSRVVLLKGLENGNFIFYTNYQSAKAMQIQKNPYAALNFYW
                     PQMARQVRVRGRVKKISSEQSDAYFSSRPLKSQFSAIVSPQSQEILDRISLEDALNQL
                     IEEYGQKPVVRPENWGGYMIIPDEIEFWQGRDNRLHDRIHYYRHGHEWTHRRLAP"
     gene            complement(16994..17869)
                     /gene="sucD"
                     /locus_tag="JBH85_03170"
     CDS             complement(16994..17869)
                     /gene="sucD"
                     /locus_tag="JBH85_03170"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HAU0945191.1"
                     /translation="MSVLVDKHTKVLCQGFTGKQGTYHTEQALAYGTKMVGGVTPGKG
                     GQMHLGLPVFNTMREAVEETKADASVIYVPAPFCKDSIIEAAEAGIKLIVCITEGVPV
                     LDMLQVKVYIENNTQARLIGPNCPGIITPGECKIGIMPGYIHLPGKVGIVSRSGTLTY
                     EAVKQTTDKGFGQSTCIGIGGDPIPGTSFIDALSLFEKDPKTEAIIMVGEIGGSAEEE
                     AAEFIKSHVKKPVVSYIAGVTAPAGKRMGHAGAIISGGKGTAAEKYAALEAAGVKTVR
                     SPADLGDAIAEVTGW"
     gene            complement(17944..19164)
                     /gene="sucC"
                     /locus_tag="JBH85_03175"
     CDS             complement(17944..19164)
                     /gene="sucC"
                     /locus_tag="JBH85_03175"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HAU0945192.1"
                     /translation="MFNCKARLDGSCFFKKVIRMNLHEYQAKQLFASYDLPVPRGEVA
                     YNVEDALLVASQLSTSRWVVKAQVHAGGRGKAGGVKLVSSKDELAAVAKSMLGTRLVT
                     YQTDARGQPVNAILVEETCEIDKELYLGAVVDRSTRRVVIMASTEGGVEIEKVAHETP
                     EKIFKVVVDPLVGVMPFQCRETAFKLGLKDDQIKQFTHLMMGLGKMFVECDLSLLEIN
                     PLVITKSGQLICLDGKINIDGNALFRQPKLKNMRDVSQEDDRENRASDWELNYIPLDG
                     TIGCMVNGAGLAMATMDVIKLHGGEPANFLDVGGGATKERVSEALKIIVSDEKVKGIL
                     VNIFGGIVRCDLIADGILAAVKEVDVKIPVVVRLEGNNAQLGAEILNKSNLNVIAATS
                     LTDAAKKIVAAVSE"
     gene            complement(19171..20400)
                     /gene="odhB"
                     /locus_tag="JBH85_03180"
     CDS             complement(19171..20400)
                     /gene="odhB"
                     /locus_tag="JBH85_03180"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HAU0945193.1"
                     /translation="MSIEVKVPVLPESVADATVAAWHKKVGDKVSRDENLVDLETDKV
                     VLEVPSPVDGVLSDILFNTGDTVGSGDLLAKISQSVSVESQKTEKEEKPVKKEEIKIS
                     ESESVSTKEDKSTSPVVRRMMAENDLKAGQIQGTGKDGRITKEDVLSYIESNREKANQ
                     TAEVQKEPSMRALSFGGREEKRVPMTRLRAKIAERLLQAQHNAAMLTTFNEVNLKAVM
                     DMRSQYKDSFEKKHGVKLGFMSFFTKAVVESLKRFPAVNASIDGQDIVYHGFYDIGIA
                     VSTERGLVVPVIRDADQLSMAEIELAINDAASKARTGKLSMEEMQGGTFTITNGGVFG
                     SLLATPIINPPQTGILGMHKIEERPIVEKGQIVIRPMMYVALSYDHRLIDGKDSVQFL
                     VSVKELLEDPSRLLLNV"
     gene            complement(20436..23270)
                     /locus_tag="JBH85_03185"
     CDS             complement(20436..23270)
                     /locus_tag="JBH85_03185"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HAU0945194.1"
                     /translation="MNPLERMIMSSSDLQKEWASSYLSGGSMAYVDSLYEDYLADPDS
                     VSEDWRAVFSALPKVNGATKEVSHRDIREYFLQHADKKLNKIIQIADSQQYQVASLIN
                     DFRSLGHLAAKLDPLEMTERMPVPRLELAYHNLADVDVNRTFFAGTSFNGPEMTLGEI
                     YNALRETYCRSIGIEYMHISDTEVTEWLQNKMESVRGCPEFSPQEKLNILKDLIAADG
                     LERYLGTRYVGQKRFSLEGGDSLIPMMKELIRRSGINNVKELVIGMAHRGRLNVLVNV
                     LGKEPGLLFQEFEGKIKYERTGDVKYHLGFSSDIKTESGAIVHLALAFNPSHLEIIGP
                     VVEGSVRSRLGRRNDLAKKDKVVPIVIHGDAAFAGQGVVMETFNFSQARGYCTGGTIH
                     IVINNQIGFTTSNPLDARSTLYCTDVAKMVQAPVIHVNGDDPEAVVFATQVAFDFRMK
                     FKRDIVIDLVCYRRHGHNEADEPSVTQPKMYKKIKSMPTLREKYGEQLVSANLLTKSE
                     VDKLVDSYRETLDKGKAVVDLVHEDYEGKQSLDWTPYINAKWTDKVDTTISKEELEKI
                     SSQLNKLPDGMKLHPVVERLLAERNKMTAGEIPMNWGYAEIMAYASLLHEGYGVRISG
                     QDSGRGTFAHRHAVLHDIETGDTFIPLEHISTSPKRYFTVIDSVLSEEAVLAFEYGFA
                     SSEPSFLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLCGLVMLLPHGYEGQGPEHS
                     SARLERYMQLCAQHNIQVCTPTTPAQIFHLLRRQVIRNFRKPLIVMTPKSLLRHKLAV
                     SPLEALFKGKFHTVIPEIDALDAQKVTKVVLCCGKVYYDLLQMRRDKNLNHVAIVRIE
                     QLYPFPKKALMAELEKYQKANEVVWCQEEPQNQGVWFSSQHNMRDCLRSDQTLQYAGR
                     EFAAAPAVGSPGLHAEQQVALVEQALLGKK"
     gene            complement(23304..24026)
                     /locus_tag="JBH85_03190"
     CDS             complement(23304..24026)
                     /locus_tag="JBH85_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HAU0945195.1"
                     /translation="MADSRNLILSIYRYNPEVDAKPYMKDYEIEIPAKSDPMLLTLLE
                     RLKAEQDPSITYRRSCREGVCGSDGMNINGTNGLACITHISQLKTDKIVIRPLPGFPV
                     IRDLAVDMTQFYQQYERIEPYLQNDEVAPARERLQSPEERAQLDGLYECILCACCTSS
                     CPSYWWNPDKFVGPAGLLQARRFLADSRDKATQHRLDLLQDPFSVFRCRTIMNCTNVC
                     PKGLNPTQAIAKIRTQMLTQET"
     gene            complement(24039..25808)
                     /gene="sdhA"
                     /locus_tag="JBH85_03195"
     CDS             complement(24039..25808)
                     /gene="sdhA"
                     /locus_tag="JBH85_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HAU0945196.1"
                     /translation="MTVARNRFDAVIIGAGGAGMRAALQMTNSGLKVALLSKVFPTRS
                     HTVSAQGGITAALGNADEDDWRWHMYDTVKGADYIGDQDCIEYLCKTGPEAVYELEHM
                     GLPFSRMDNGKIYQRQFGGQSKHFGGEQAARTCAAADRTGHALLHTLYQQNLKAKTHV
                     FSEWYALDLVKNSQGRIAGVTAMCMETGEIVFFQTRVCILATGGAGRIFQSTTNAFIN
                     TGDGFGMALRAGIPLQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLINKDGERFMERY
                     APRVKDLASRDVVARAMALEIRAGKGFDPKGVDHVKLKLDHLGADLIMSRLPGIRELS
                     MKFAGVDPIVEPIPVVPTCHYSMGGIPTNMHGQVITKTDGKEHVVEGLYAVGECACVS
                     VHGANRLGGNSLLDLVVFGRAAGIHVEELWQSNQLPDMSYVSEDDVAASLVRYERWEN
                     SKDGESHAVIRDEMQRVMQEDFGVFRTGEVMASGLKRLQALRDRLAHAKLDDKSQIFN
                     TERVEAMELDNLMATAYATALSAIARTESRGAHSREDYPKRDDANWIKHTLYFEEGEV
                     IDYRPVNTSPKYVEPFEPKERVY"
     gene            complement(25810..26157)
                     /gene="sdhD"
                     /locus_tag="JBH85_03200"
     CDS             complement(25810..26157)
                     /gene="sdhD"
                     /locus_tag="JBH85_03200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HAU0945197.1"
                     /translation="MVNNVTSLTGNGLKDWLIQRVTAVYFAAYLIFLFGFILANPDLS
                     FSQWHLLFTNKAFQIATTIGLMALTLHAWIGIWTVTTDYMKCTVIRLSVQLLVVLWLL
                     TQFIWGLMIIWGQ"
     gene            complement(26151..26543)
                     /gene="sdhC"
                     /locus_tag="JBH85_03205"
     CDS             complement(26151..26543)
                     /gene="sdhC"
                     /locus_tag="JBH85_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HAU0945198.1"
                     /translation="MRKKLIVNKKRPINLDLSSLKFPPMAIASILHRISGVLIFLLFP
                     FVLFILGCSLQSEESFVQAKTMLANPFYKLMLWAFGASMIYHVIAGIRHLIMDMGFGE
                     SLRAGRMSAVSIIVLAVILAIFLGIWIW"
     gene            26835..27986
                     /locus_tag="JBH85_03210"
     CDS             26835..27986
                     /locus_tag="JBH85_03210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HAU0945199.1"
                     /translation="MEVFMITKRPIYNQQLKCVAFEILSCRNVMLNEELTRQLYDLIY
                     HTDTQLPLFVPFSLKKLLEQFETPINNPIILKLSADEIESVYSLTELQDSLFSIALLI
                     NTPQQLAWLNFAEYIGLTEQLMSKSDVTKVVQYSKAKNRKIIAYDLNQHVNFEKCKAM
                     TMDYYCGDFLLNSIAEEGTEIAANKLNVLQLIQELQKEDCDLNEITHIIQADPLLSYQ
                     LLKLVNSVGFSSGPSIESIDQAVARLGIINLKKWVMLFSMKNISDKPIEVLESGLIRA
                     HMAEELAKKSSNIFSQSAYTAGLLSILDCLLNKPMPALVEQITLAEEIKDALTNKSGP
                     LGDLLSLVIAYEEGHWEEVTQLNINGIDLSQLYIDSLALVSQGTKIMSN"
BASE COUNT         8783 a         5970 c         4986 g         8351 t
ORIGIN      
        1 cttggttgct tcttttgatt acaatcttat attgatatct aaataaagta aaaaatagtt
       61 attctgtaga ctaaacttta cagcttcaag aaagtcggct aaggcctaat atgaaatctc
      121 tgttattgca atctgtgatt gaaaaatgaa tccgattaga aaaattatcc atattgatat
      181 ggactgtttt tatgcggcaa ttgaaatgcg tgatttccct gagctggcaa ataaacctat
      241 cgctgtaggc ggggatgcaa aacgtcgtgg agttatagcg acctgtaact atgctgcccg
      301 ccaatttggc atacgctctg caatgccaac agcccatgcg cttaaacttt gccgagagtt
      361 aatcttgcgg ccagtacgta tggatgtata ccaaaaggaa agccaatata ttagatccct
      421 attaacagaa tatacggacc tcattgaacc tttatcatta gatgaagcct atctggatgt
      481 cactgaatcc acacaatgcc agggaagcgc cacctggatt gctgaagaaa tacgcgcccg
      541 aatttatcaa gcaagacaac tcactgcgag tgcgggcatt gcgccaaata agagtctcgc
      601 aaaaatagcc agtgattggc ataaaccgaa tgggcaaatg gttattagac ctgaggacgt
      661 tagcgcattt gttcttgatt taccagtacg caagttattt ggcgtagggc ccaagatgga
      721 ggaaaaattg agggcgctca atattaaaac ctgtgctgat ttgcagcgat attccattga
      781 atatttatta caaaaatttg gcaccatggg tcaaagactt tatgaattag cgcgaggcat
      841 tgataatcgc cccgtcaatc ctgagcgtat tcgaaaatcc atcagcgttg aagaaaccta
      901 tccaaaagac ttgccaaata gtgaagcttg cctggcagtc ttgccagatc ttatggcgcg
      961 ccttgaagca agaatacaac gtgcaggtaa aatttctggc attcacaatt tatttgtaaa
     1021 attgaagttt aatgactttc agcaaacaac tattgaacga gttatggaca aacttgattt
     1081 aatcgtttta cgccaattga tacaagaagg ttttgccaga agaggaatgc cagtacgatt
     1141 attaggtata ggaattaaat tgaaacaaga aaatacgtat caaagcgtac aattgccatt
     1201 acttgactta taacaagtat ctaaacagtt gatatcagat tctttcccaa acttgccata
     1261 attatcagaa cttaatacat caactctctt ttttatgcga caccctgcaa tagttaacaa
     1321 aatcaggact tttatattga aaatatcaat caacggctgc acgcaatcta gttttcataa
     1381 cataaacaaa tagataggat aaatttaaaa ataatcttat tattcctgca tcataacact
     1441 tggaaatatt attttgatgc agccattcat tatcgacgaa aaactggttt gtcgtttaat
     1501 tgcgagccag ttcccccatt attccaatct ccctgtgaag ccggtagctg tcggtggatg
     1561 ggataaccgg acgtttcatc ttggcaaaga tatgcttgta cgactgccca gtgccgagca
     1621 atatgaattg caggttgaaa aagagcaaca atggctccca caattggctt ccttgctacc
     1681 tgttccaatt ccgacacctt tggcaaaggg aatgcctggc gaaggatacc catggaaatg
     1741 gtcgatttac cgttggcttg aaggagaaac gattgtctct gccaatttat ctaacctgaa
     1801 tgaaatcgca aaagatctgg caacgttcct cactgctttt catcaaattg attcttccgg
     1861 tggccccaaa cctgggatgc acagctttta tcgcggtgga gatttgaaaa tttatgatcc
     1921 agaaacccgt caagctatcg attatttaaa aggaaaaatt gatacagacc atgccactga
     1981 aatttgggaa accgctctga atacctcttg gcaaggcaca cctgtgtggg ttcatggtga
     2041 tatcagcgcg ggtaatcttc tggttaaaaa tgggaaatta tgcgctgtta tcgattttgg
     2101 gcagttgtcc gttggcgatc cggcgtgtga tcttgctatt acctggacat tatttgcagg
     2161 agacagcaga aaaatcttcc gtgaaatgct tgctttagac aaaggcactt ggttccgtgg
     2221 gcaagcatgg gctttatgga aagcgttaat cgtagcagca ggcattgtaa acaccaatgc
     2281 aatggaagtg caaaaatcct gccatattat taatgagcta tttttgactg agctataatc
     2341 tataccatat cgctcaattt gactcaggga atactatttc cttgtaagca gtgatatgct
     2401 ataaaataat ctccggacga gacgcgccgt acccggttaa gacaagacga cgcctttaat
     2461 caatctaaaa ggagtcgtta tgctactacc ctggctttat ttaattatcg cggggctctt
     2521 ggaaatctgt tgggctgtcg gtttaaaata taccgatggt ttttcgaaat ggcagccaag
     2581 cctgtttaca gccaccacac tgattattag tatgttttta ttagccaagg ctgcccaaac
     2641 attacctatc ggcactgcct atgcggtatg ggtagggata ggttcactgg ggactgcaat
     2701 catgggaata ctgctgtttc aggaacatct atctgtcttc cgattgctat accttgtatt
     2761 aatgctgata tctatctttg gtttaaaata cacggcttga tttgaatcgt tccagtattc
     2821 ctcaacttgt tgtatgatgg ccctctcata atcccatgcg ctctaacgat gaaaataagt
     2881 cgattaaaaa ctttttggat aattacccgc ctattttatt acacaggtgt tgcttgcact
     2941 cgctccatat ttaagtatct ttttagcacc cctacgaggc catgggttga taaagtcatc
     3001 caccattggg ttgatcaact cttaaatgct gtgaaagtag aatataaagt aatcaatcca
     3061 cataatgtcc agcctcagcc tggcaaggca acgatcctta tgtgcaatca ttccagtgct
     3121 tatgatattc ctttaggctt caaagcattc cctaataact ctattcgcat gcttgccaaa
     3181 cgagaactct ccaaaattcc acttttaggg aagggaatgg ctgcagcaga attccctttt
     3241 attgacagaa aaaacagatt tcaagccata aaggatttgg aatttgccca gcaactgatg
     3301 gagagtggca ttattctatg gattgcacca gaaggaactc gctcaaaaga tggcaaacta
     3361 gccccattta aaaaaggtgg ttttatcact gctattcaag ccaaggctac tataattccc
     3421 ataggaattc gcggagcttt tgatattctc cctgcccgca cctttaatat acatttgaat
     3481 caaaaagcag aaattcatat tggcgagcct attgatgcag ctcaatattc aattgaaaat
     3541 aaagaggaat taatcgaaaa aacccatcaa tcaataaaaa agctggttgg ggagaattga
     3601 aaaaactcac atcccggttt gctgaaaaag atgactaaaa atacctacaa taactaataa
     3661 aaaaaagacc acgttataca aaaaataaaa ttgattccta caatagaata aacaatccag
     3721 gctacccgtc ttttaatatc ggtactaact gttttgaaat ttcctaaaac ttcacctaga
     3781 ctttaaaaag aaaatcaata tgaccgtgcc atgagcatta ataaaataga agaagacagg
     3841 gatatctctt ctgatctgga aatgaaagcc aaaatgtact tggtacaccg aatggataaa
     3901 gccgggccat taacagttaa agatgttcgc atcctgataa acaagttaag taaagatttg
     3961 cagaaaaatc aattaacatt aattgattgt caactaataa taaatcttgt tgaatctcgc
     4021 tttactttgg tcaaacaagc aacaagatat ctacagtttt ttctaaataa acttgatggc
     4081 aaatcaatta acccaatctt aatcccactt tcaaataaac ccttttggca aaatgaacca
     4141 catccattcg atcattatcg atctaccgat caactacctg aaaaagtaga tatcgtaatc
     4201 ataggagcag gtctaactgg cgcttctacc gcatatcatc tgatcgatgc agtcaagaaa
     4261 agacacctta ctgttgtatt gttagataag ggaaatccag ccactgaagc cagtggtcgc
     4321 aatggaggta attttgaatt attacctgaa aactctgtgg gaatctatag tggtttagtc
     4381 tcagagcggt ttcgtttttt aaaacgatgc tacccccatg ttcatccgtc aatattacaa
     4441 attgaaagcg aataccatgc ctcactggtt tttcaatttg ctttaaaaaa tcgcaatcgc
     4501 tttaaggaaa ttgccagaaa agaacgtatt tattgtgatc tggcagcaaa agggtggctc
     4561 tacattgctc atactgaaga ggaagaacaa gcaatttgtg atgaagtcac tctggctgcc
     4621 caacatggcg agcgcatcta catttggtct cgaaaaaaaa ttagagaaca attcggcatc
     4681 aactccaagt tcataggtcg atttattcca gatgacggca cctacaatcc ctttaaatat
     4741 acgtgctgtc tgattaaggc ggcaatcaaa agtggtatca agctctatac gtttgtgaaa
     4801 gttcaacaaa ttaagagcat agatacagaa taccatcaat tgaaaaccaa tatgggtttg
     4861 cttaaggcta ggcaagtgat tgttgcaaca aacgcattta ctagcgagtt gctcccggaa
     4921 ttgagagcga ttaagcctca ccaaagtcaa attgcaatta ccgattcaac accagattac
     4981 tgtaagggtc gattaataac tagtgaagat ggaccgctct atctcaatca acccagagtc
     5041 agatcaaaga atgggttggt gccattgctt attggtgccg gtgacgaccg accaatgaaa
     5101 aacccttatt atcgtaagcg ttcaaaaaaa gttcatgatc ttattgtgca gcaaagagat
     5161 aagtatttcc cgaaccttaa agggagacca ttttcaaccg aatgggttgg cgccttagct
     5221 tttacacctg atcaattacc cgctattggt tacctgtctc caggaataat tattgtgatg
     5281 tgctgtaatg gatatggagg aagctatacc acagcagcag gacttgccgc agctgaaatt
     5341 gcattaactg gaaaaaatcc cccatggtta cccgcagacg tattttctcc taaacgcctc
     5401 ctgtcagaca agccactatt ttgggaagat agtgacagtt tatggcggat tggaaaaaca
     5461 ctttgtacaa cacttaataa tctcaatcaa cttctggctg agtccctttc atatcagtcc
     5521 atgtatcaac cttattctac aatttcttta ttaccgcatg ggcaccaaga gaagaattgc
     5581 aatcttgacc cactaagagt aatgcatcaa ttagcaatct ttagaacttt tgcctatcag
     5641 gaattagaaa tgttaattcg ctatacctcg cctgtttgct taagtaaggg agaaattctt
     5701 tttaaacaag gtgatgcggg acattcttgt tttattctga ttcaaggaaa aatcaatctt
     5761 tattatgagc atgctgaagg ctttacttca atggttgcag aactggaggc cgggtcagta
     5821 tttggtcaaa tggcattatt tcttgagaat aaacgtatgg ccacttgcca agctacagaa
     5881 aactgttcca tgttagaaat catggtagaa ccatgtaaat cgctttttat tcagcaacag
     5941 gctcttggaa ttaaattact ccgcctctta aaccagggag tcatcgatgc gttacacaaa
     6001 ctcaataagc gattgaaata cacttaacaa aaatcataaa acaaatattg attttgattg
     6061 ctttattcag cactaacaat ttacgcgcca agtgtagttg gccaattcat tttaaaaatg
     6121 tattctagta attaacccca tacccatatg ccatattaga tatcgcagca gctaaaccaa
     6181 tatgtcttgg atcagaagca gccgttaaga cattactttc tttgtcccat gtaatggctt
     6241 gcatatctcc ataatattgt ttcaatggca ttaaatggta tcccatagct tgtaaaccct
     6301 gttgaattga acttgggaaa gtatcaggct caaattgcaa aacatctggt aaatattgat
     6361 gatgaaatcg catggctgaa accatactga tagctccata cccatcataa aataatagtg
     6421 aggcaagtaa aaccatagta ggaatacggc ttcccccagg agtccccagg atagctacac
     6481 gccctggcat ctccaggaag gttggagcca tgctggatag cggccttttt cttggttcaa
     6541 tggcattgcg ctcacttccc actaaaccaa agacattttg ctcacccact ttagtagaaa
     6601 aatcgtccat ttcatcattt aataataccc ctgttccctt cgcaactaca ctggagccaa
     6661 aaatgtaatt aattgtcatt gttgcagcaa cacgatttcc ttccgtatca ataatcgaaa
     6721 tatgtgaggt atttgagtgt tttcccgttg gaactgagcc ttgcaagact ttactatcaa
     6781 tcgctttatt tggtgaaatc aagcggctta attgtttcgc attatctgag gaaatcaatt
     6841 tatcaagtgg aaccttaata aaatcaggat cacccagaaa ttgatctctt tgccaataag
     6901 ccaatctcat cgattcaacg acgtaatgaa cccattttaa tttgggaaat gaagacaaag
     6961 gaaatttgga taatatattg agcatggtta ccaatgccac tccaccggcc gaaggcagag
     7021 gagctgtgat aattaacata ttatgataag cactaattaa aggtggcctc actttaattt
     7081 tatattgagc cagatcatca agagaccaag ttccacctgc cgcattgaca ccttgaacta
     7141 gcaaagaagc cgtttctcct gaataaaatc cagcatttcc gtacttggct atcaacctga
     7201 gtgtttttgc caaatctttt tgaacaagtt tttctccaat ttcaaaaggc tgaccattct
     7261 ttaaaaaaat agcggcggta tcgggatatt tcttcaagtt ttccaatcta tcatccagag
     7321 tggagaaata acgaaattga ggatctacag gaaaaccctc ttccgcaagc ttaatagccg
     7381 gagctaatgt cttgctaagc ggaagacgtc catagttctt ggctatataa accagggcag
     7441 ctggctgtcc aggtatggcc gcagataaac caccatttag agaaaggccg gggatcactt
     7501 ggccgtcagg agccaaatac atatccttac ttgcggccag aggagctacc tccctgccat
     7561 caataaagag gtttaaatgt tccttttcct gatgaagtag ccaaaaacct cctcctccaa
     7621 gtcccgaatg atatggctca actactgcca aggcagcagc taccgcaact gcagcatcaa
     7681 aagcatttcc tcctgctgcc aaaatctcta aaccggcatg agttgccaag gggtgggcac
     7741 ttgctacagc atatccaggc gggtgttgcg gaaatgtttt tgcattaacc tgataaatat
     7801 tacaaataaa aaaaaataaa caactcagcc atttataatg atctttcatt ttgtctcttt
     7861 tttaattctc taactacatt gggtggaaca aattgagaaa tatcaccatt taaggctgca
     7921 atttcacgaa ctaaagtgga tgagatatac attaaatgct ctgcgggggt taaaaataat
     7981 gtctctacct ttttagatag ttttctgttc attccagcca gttgaaattc atattcaaaa
     8041 tcagaaacag ctctcaatcc acgtaaaata atgcctgcgt tttgttctaa tacaaaatca
     8101 attagcaaat tatcaaaacc cacaactctc acgccagtta aatgtccaac ggactcttcc
     8161 agtaaactaa ttctgctttc ccaagataaa taaggccgct tgtttttatt actcgctaca
     8221 gcaactatca attcaggaaa aatagtgctg gcccgagtaa taatatcaat atggccattg
     8281 gttacagggt caaatgttcc agggtagatt gctttttgtt tcatctcgtt aattaccatt
     8341 tgcatataga agcagtctag cgtattgtaa attgaaaaac tataaaaaaa tggaattgag
     8401 gtaagcaatg aatgcgataa aacgtttgac aatcatttta atttgctttt taacagcatg
     8461 cgctccccca agaccctctg aagagccgcc tgcaaaccgt gaaattcctc ttgaagaacg
     8521 taaagccgaa acagccactg tttcctcatg ggaaattaaa ggggctctgg ctgcaaaaac
     8581 caaagcgaaa ggatggtctg ctactatgaa ttgggtccaa caaggggcca actcatacca
     8641 aattcgttta atggggccat taggtggtgg agccgttcta atcagcaaaa aggggaatac
     8701 tattacattt caagatggcg ccaaaataac tacttcgacc aatgccgatg agttattact
     8761 aaaacaaact ggcattcgac ttccagtaaa taatttgtat tactgggtaa gaggtttacc
     8821 cgcaccaggt ggaatccaat cagaaaaaca tgaccaattc aatcacctga tacaattaaa
     8881 gcaaaatggc tataccattg attttactaa gtatacttcg gtcaagggaa tagatttacc
     8941 aagtatgatt cgccttgaag gaaatggcgt catggtaaag gtagtgataa agaattgggt
     9001 tgtataattt aattcttgta atttatttgc tttctgaagt tgacatcgat aaaaaagcac
     9061 tgcaaaatac gcagcacatt gcagggatga atactattta taaactcatg gatgattgaa
     9121 gaatctacaa ttataggggt gtcgccaagc ggtaaggcac agggttttga tccctgcata
     9181 cctaggttcg aatcctagca cccctgccat tttcttgttg attcaaccta gaatatgaag
     9241 ttgaatctag gtacaagtaa acagacggca gaagataacc tggaaggatg cgtacttcgt
     9301 atcgctcaaa taataataat atctttttgg ctgtcttctg ctatgtgttt aagttatgtg
     9361 attaacctaa atctaaggct tttgacacat gtccacgatg atgattttta cagggaatgc
     9421 taaccctgaa ttagcactaa aaatttcctc acatttgcaa atacctattg gcaaagccac
     9481 cgttggtacc ttcagcgatg gagagactat ggttgaaatt ttagaaaatg tccgaggtaa
     9541 agatgttttt gtcctccaat caacttgtgc gcctgcaaat aataatttaa tggaattgct
     9601 gattatggcg gatgccctga gaagatcatc tgctggtcgt attacagctg tagttcctta
     9661 ttttggctac gcacgccaag ataggcgagt gcgctccgcc cgtgttccta tcacagctaa
     9721 agtggtagca gacatgatgg cttcagttgg aatttgtcgg gtccttactg ttgatttgca
     9781 cgcggatcaa atacagggtt tcttttatat gccggttgat aacgtatact caactccggt
     9841 attgctggaa gatataacca aacaaaaatt aaacaatatc atgatcgtat cgccagatgt
     9901 cggtggggtt gtacgtgcca gagcagttgc taaaagactg aatgacgctg agctgtcgat
     9961 tattgataaa cgccgtagtg ggccaaataa atcagaagta atgcacatta ttggtgagcc
    10021 cgccaataaa aactgtatta ttgtagacga catagtagat actgctggaa cactttgtac
    10081 ggctgctcat gaattaaaga aaaacggagc aaaaagcgtc agagcctaca ttacacatcc
    10141 tgtgttgtca ggccccgcag ttaacaatat taaacattca ggtcttgatg aggtggtagt
    10201 aactgatacc attcctttat cagccgaagc acaaaactgt gaaaaaatca gagtggtcag
    10261 tcttgctgat atgttagctc aagcaatcaa acgagtaaat gttgaggagt cagtaagctc
    10321 catgtttgct gaataaaatg aaatattctt tgataataaa aagggagcta aggctccctt
    10381 tttattatca atctttctta atcccttgta ccaacgtatt tatcatcaaa ataacgtctt
    10441 aatttagttc ttaaagttcc acgactaatt cccagcatga ttgcagcgcg ggactgatta
    10501 tacttgcaat gttccattac tgcacgaaat agaggggtct caatttcttc aagtacaaac
    10561 tggtataagt caacaggatc agttccctta agctctgaaa aatatttttg tacggattga
    10621 gtcacgcttt cggctagtga agcagtggta tctcctgcat cattactgat tgttgtcatt
    10681 attattagct cctcctttta aaagcggtat attaccgaat tgagcaatac gagacaaggg
    10741 cagaacagaa aaaactgcat taaaattcaa tatatactgt ttgctcttga atcattgcca
    10801 cgtttctcac catagtggat tgaaaagagg ataagccgcg ctcaacagct tatcctatat
    10861 ctaacgaact actgaaattt catcatagat ggatcaaatg gtttcccatt aactgtgaat
    10921 tttccttcac tcaaactcat ctcaatgaca tagtctttgc catcgacagt gattaaacca
    10981 gattgctcca actcattaat ttgcttatct acttgcattg cagcgatttg ctcaggagta
    11041 ggttctgctt ggtttgattg accttgactg ttttgcagct gttgaattaa cgcttgttgc
    11101 atttctggct gttttgccat ttgttgcata atcgattgct gcatcagttg cttcactacc
    11161 tcgattggca tttttaactt ggcattacct tgagtttttt gaatcaattc aaagggatta
    11221 gaactatctc ctttgggtaa agtaattaac aaattaccat caatcatgcc ttgtggaagt
    11281 ttgagactta atttggaaat ttcaaactct gcacctttac taaataactt tggcaattct
    11341 ggcagcattg ccatcaatgc ttgttgacgc tcttgatctg tgcccctttg catcgcatta
    11401 gcttgctcat tgattttagc caatacttca gcatcaaggt ttcttaagga catctccact
    11461 tcacctggac cgtaattttg cccattggcg aatagtgatt ttaaagcagc actaaaatgc
    11521 gtgctgaaga gattatcgtc tatatcgctg cttgagctta atgtcaattc actaatttca
    11581 aacatctttt gatctttaac aactacagca agtgatggca atgaaaaact ggcttgaccc
    11641 aggtataacc ctgtagtcgt tttatgtaag tcatactcgc tgtttacctt acccaaagag
    11701 agcttggtat catctttaga aaactctgcg ccatcaaatt caatttcccc ttccacttta
    11761 tccaaattgg aagacattga tgtagtactg tccataccca tccaattaaa tttaccattt
    11821 ccatctttag cagttaattt gaaagaagga atggacaact caactgtact tttattcaaa
    11881 taatttacaa aaatgcttaa atccagctga ggcttttctg aatcttgaga aaaaagctca
    11941 ttgaattgct gattatattt ttctggaaat ggaaatacgg tttgtgcaaa gcccattcca
    12001 aaacgtaact gcttattcgc gtatataatg gggccatgat aaatcttaat cggcatttcc
    12061 atttgataat cttgagcagg agtagtttgc aattttccgt catcgtcttt tactactcgc
    12121 tcaggtacgt gtaaacgcca tttaactaat gcatcagagc aaaaccaacc tctcttatat
    12181 tgctgaatgt cagcgaaaag cccattggat tgattaatta cctcgacagt ttttttaacc
    12241 gttctttcgg ttagaattcc catgccataa tatccaccta ggattaaaac agccaggata
    12301 attactaatc ctgtaagttt tttcattatt atctccatgt tattaatttg caaatagcat
    12361 tactcgagcg cagcaaagtg ctgcgaaaag tataacagca aataacctaa aagtgcgaca
    12421 gtctaatgca agaagattaa aacttaatga aaaatatttt cattaaattt cataaatttg
    12481 atgtatttac agcaaaaatc aaacaatggt ggcatattta tcatgcaatg ctcaatgttt
    12541 gatttttgct atctcttaat gccttatggg tttgcaataa gtctctttaa cagtaaacgc
    12601 aaggattaag gccaccaagg aacataaggg gagtaatttt agaccggctt ggaaatccga
    12661 taataataac gtttcaacat tataggctct gggcccagac accatgtcta tgatacgtcc
    12721 tactaaaggc tggaataagg ccccgacaaa aattgaagtc atattggtaa atgcgataga
    12781 tgtaccaaca acactcctgt catgtatttc tgtagaaaca gcgtatgaaa tcgcaacccc
    12841 agtgtttgta agaccaaaaa caaaaaatag tatgtaagcc gttgtttgac tcatttcagg
    12901 aataaaaaca aataaactgc tcaagatcac accacatact gcggaaataa tcatcaatgg
    12961 cttacgacgt cccattttat cagaaatcca acctgataat gggccactaa ttccccagcc
    13021 tataaagatc aatcctgttg caaatgcagc tgcgtgcgcc cctaaaccac ggccgaactg
    13081 taaatatgcc ggacctattg cctctccaat tacagcggtg gggccaaata aaaatccagc
    13141 atacatcgca ttaagccaag tttgtttatt tgataaaatg atctttaagc tatccaaaat
    13201 actgattcga ttaacagaac gaatttcatt gcgatgctca ccgggtttat cttgcacaaa
    13261 ttgatacaat aatcctgata aggcaataaa taagaaggcg ataatcagca tgctatggcg
    13321 ccagccaaca ttactcacta aaaatgaaac aggggcctcc cctgcggcag caccaagcat
    13381 tcccaacgct tgagttaatc cagataataa tccaagcata gttgggggga accatgaagt
    13441 ggcaaggcga agtgagcaaa tgaatgcaaa agcagcactg aaaccaatca acattcttcc
    13501 aattgatgca gtcagcagac catccgcaag gccaaataca cagcaaccaa aagcagtaac
    13561 taatgacata atagtcaata accatcgtat gcttaatcga tcaactgtca atcctacagg
    13621 aatttgcatt aagatatatg gaacatagaa tgatgcagtt aatatgccga agccagcctc
    13681 attaatgcca aagtccattt gtagatatcg gtgcattaca ccaggcgcta ctctagctaa
    13741 ataatcagaa aaataaaaag cagctgccaa cccccaaact aaccacgcaa aacccaggta
    13801 atttttacgt ttataaattt ccactttaga tattcccatt ttggtataac caccacatgc
    13861 tgtatttatt taaaaaatga tcaataaatt aacaatgata acttatcatt atactgctgt
    13921 tgtaacttat ttcaacatat agtttatttt tacctttgcc tcattagtaa tgtattgagg
    13981 atttaggata taatcctaat ttttaatgac tcatcgtcat ccagcaaaac aaaaatcctc
    14041 tggattgagt tgaatgatta aaagaccagg acctacgaaa aaagccaagg tcgaggaaaa
    14101 aaatgtttta aatgagagaa tttagacaaa ctaaatgact gaattaaaaa cattttttaa
    14161 ccaagagatt ggagttttcg gatatccagt ggatgaactc aaaacaaaaa tgaataatcc
    14221 ccgagggttc accaagaagt tttaaagaga gtaaggcaaa atcatatttt gattatatag
    14281 tgaaacattc gagtcgttcc gcctgtgcgg atgacaaaaa tagattcaaa tttataaagt
    14341 accagggctc ataattgacc gaaattggta tgcccttgtc ctgttaaaat tgaatcctca
    14401 tatattttca tgaatggaag ttggttactc tgaacaagtt taaaaggcaa attttcaaga
    14461 tactatacag acatgagatc tacccctgat gaacaaacta aatatagcca ttaaagaagc
    14521 ttttgaatct tccggaagct caaaagaagc gaataaagtt taccttgaat ttatcaaggc
    14581 aaattttata attcctattg aatccaattc tgatgatagt gaacccagag tattattttt
    14641 ggaagaaaat aaccatgttt ttttgccggt attcactgat atgaaatacc tcgatgcttg
    14701 ggcaagtgaa attagccaac atatcaaatt acttaaatta tcaggggttg acctgctgaa
    14761 aggtttaggt gagaaagtta cagtttgcct tgatattggc agtgagcttt ataaagaatt
    14821 caatccatct gaaattgaac gaatgaggtc gatggtttta aaattattta aaaactgaac
    14881 tcaatacaag aaacactccc attcaattga agaggcatta cattatactc ttcaattgaa
    14941 cgcgatgatc atgctacgag ctcaagtaat tggtagccta ctattgcgga agcggctatc
    15001 gcaccaccaa tttcaaagac taaagatagg aagctgtttt tatgatgata ttgctgatca
    15061 tttgcagctg tggttttatc taaaagaata tcttcctcga tattgttcaa atcaaataat
    15121 ggtttttctc catatatacc agcccaccat ccttcgagcc attgttctgc ttcttgagaa
    15181 ccttcgcgga aaggattatc ttcttctgga acttctgcca atgcacattc atacccaaaa
    15241 atataacatt cttcatagct tgggtgttca atgttaaatc gtaatctaag atgtgataat
    15301 aatgatgttg tatcgttcat gatgatagcc tcttttatgt atcctgaata tatttccgct
    15361 tttcaactca tttactccta agtctataat tattaacgca attggtgcag aaccgctttt
    15421 tagtgcatgt aactcccaca cttaaatcaa ttttacgact ttaatttgcc ccctgccttc
    15481 gaagatcaaa tatttacatt atcttgacaa aaatcttttt acttttggtt ctttaacacg
    15541 atacttcatt aacttattga ttttattaat agagaagcaa gtattaggcc aattttttta
    15601 tcttattttt tcatggactt ttatgcttaa taaatgtcta tattgcttaa aataacaacc
    15661 gtcaagaacg ataaattatc ccgctctaac ccatctatcc ccaacagaat attgatataa
    15721 cggacacatt attctaaggt caaagctcaa catgttttta acaaagagat tggaattttt
    15781 cgcgagtcct ggtttataaa tctgggaaaa tttgcgaatc ccatgtgctt attcaaaaga
    15841 attcaaccat taaccaacct tccatgaaaa ctcatccttc tatatctcaa tagtaaaatg
    15901 atgccggcag gaatgatgac aaaaactgcc ggtcaaggtg ccaatctacg gtgcgtccat
    15961 tcatgaccat gccggtaata atgaattcga tcatgtaatc tgttatctct accctgccaa
    16021 aactcaatct catccgggat tatcatatat ccaccccagt tttccggtct gactacgggt
    16081 ttttggccat attcttcaat caactgattt aaagcatctt ctaaagaaat cctatccaga
    16141 atttcttggc tttggggaga aacaatcgca ctaaactgac tttttaaagg tctggaggag
    16201 aaataagcat cggattgctc gctactgatt ttttttactc gaccacgaac acgtacttgt
    16261 cttgccattt gtggccaata aaaattaagt gctgcataag gattcttttg gatttgcatt
    16321 gccttggcac tttgataatt ggtataaaag ataaaattac cgttctctaa tccttttaat
    16381 aagacaactc tggaatctgg atagcccttt tcatctactg tagacagaac cattgcagtg
    16441 ggatcatttt tttcatttag taatacatca tcaaaccata gtttgaattg agaaatggga
    16501 tcattttcag cggattcttc actgagctgc aactcaccat aatctcgtct aatatccgca
    16561 agacttctaa atttgctcat agcaaacctt cactaaaaaa atgtaaataa ttatactctc
    16621 taaaatttat aatttgcgat acattttaca gttaaaattt ttcaatcgac ttcttgcata
    16681 aactgattat tttcaggact tatgagaaac cccatggcca aggcaaaagt acttttaatg
    16741 agggaatatg gcaataaact aaattaaaaa aatttttaac aacgagattg ggggtcctaa
    16801 gacctgattt tgttttaggg caggttatga aatggatcta atcttattta accaagtaac
    16861 aatattatca tgatgtctgt tgggctgcgc ttgatacaca gcaccaacat gattcgagga
    16921 aaaatcacca atttatctta atcagttcct atttctataa tgcaagagct gttaagtaag
    16981 aaaaagtatt ttcttaccaa ccagttacct cagctattgc atctcccagg tcagcaggag
    17041 atcgaactgt tttcacacca gccgcttcca gtgcagcgta tttttctgct gcggtcccct
    17101 tcccaccaga gataattgct ccagcatggc ccatacgctt tccagcaggt gctgtgactc
    17161 cagcgatgta agatactaca ggttttttta catgagactt aatgaattca gctgcctctt
    17221 cctctgctga accaccaatt tctcctacca tgatgatagc ttctgtttta ggatcttttt
    17281 caaataaaga caaagcgtca ataaagctgg ttcctggaat aggatcgcca cctattccta
    17341 tgcaggtact ttgaccaaac cctttatcag tagtttgttt tactgcttcg taagttaaag
    17401 ttccagaacg tgaaacgatt ccaacttttc cgggtaaatg gatatagcca ggcataatac
    17461 ctatcttgca ttcacctggt gtaattattc ctggacaatt tggaccaatt aatcgagcct
    17521 gtgtattgtt ttctatatac acttttactt gcagcatatc caatacaggc acaccctctg
    17581 taatacaaac aatcagttta atacctgctt ctgctgcttc aataattgaa tctttacaaa
    17641 atggtgcagg aacatagatc acactggcat ctgccttggt ttcctcgacg gcttcacgca
    17701 tggtattaaa tacaggcagt cctaaatgca tttgaccacc tttgcctgga gtaacccccc
    17761 ccaccatctt ggttccataa gccagtgctt gctctgtatg ataagtacct tgctttccag
    17821 taaagccctg acatagcact tttgtatgtt tatcaactaa tacactcatt gttaacctcg
    17881 taatctaatg gcatatctgc tttaaaaact accttaccaa taatgccaaa attaatttat
    17941 tctttattcg gaaactgctg ctacaatttt cttggctgcg tctgtcaaac tcgttgcagc
    18001 aatcacattc aaattgcttt tattcaatat ctcagcacct aactgggcat tattaccttc
    18061 cagtctgaca acaacaggaa tttttacatc cacttctttt acagcagcaa gaattccatc
    18121 agcaataagg tcacaacgaa cgataccacc aaaaatatta actagaattc ctttgacttt
    18181 ttcatctgac acaataatct tcaaagcttc actgactctt tcttttgtgg cgcctccccc
    18241 aacatccagg aaattagccg gctcaccacc atgtaatttt atcacgtcca tggtagccat
    18301 agccaaacca gcaccattta ccatgcaacc tattgtccca tccaaaggaa tataattaag
    18361 ctcccaatca ctggcacgat tttctcgatc atcttcctga gaaacatctc gcatattttt
    18421 cagtttaggc tgtcggaata aagcatttcc atcgatatta atttttccat ccagacaaat
    18481 tagttgccct gattttgtta tgacaagcgg atttatctct aatagactta aatcacactc
    18541 aacaaacatt ttccctaatc ccatcatcaa atgagtgaac tgtttgattt gatcgtcttt
    18601 taatccaagt ttaaaagctg tttcacgaca ttgaaagggc ataacaccaa ctaatgggtc
    18661 aacaaccacc ttgaaaattt tttcaggtgt ttcatgagca accttttcaa tttcaacacc
    18721 accttctgta gaggccataa taacaactcg tctggtggat ctatcaacaa cagcaccgag
    18781 atataattcc ttgtctattt cgcaggtttc ttcaaccaaa atagcattaa ccggttggcc
    18841 tctggcatca gtttgatagg taaccaagcg tgtacctaac atggatttcg caactgcagc
    18901 caattcatcc ttgctagaaa ccagtttcac cccaccagct ttacctctac caccagcatg
    18961 gacttgtgct ttcacaaccc agcgagaggt tgataattga gaagcaacga gcaaggcatc
    19021 ctcaacatta taagcgacct caccacgagg aactggtaaa tcatagctcg cgaataattg
    19081 cttggcttga tattcatgta aattcattct aattaccttt ttaaaaaagc aagacccgtc
    19141 aagacgggcc ttgcagttaa acatgactca ttaaacatta agtaaaagtc gagacggatc
    19201 ttccaacaac tctttaacac ttactaaaaa ttgtacagaa tcttttccat caattaaacg
    19261 atgatcataa gacaaagcaa catacatcat aggacggatt actatttgcc ctttctctac
    19321 aataggtctt tcctcaattt tatgcatccc caagatacct gtttgcggtg ggttgataat
    19381 gggagtagct aataatgaac cgaatactcc accgttggtt atggtaaatg ttcccccttg
    19441 catctcttcc atagacagct taccggttct ggcttttgat gccgcatcat taatggctaa
    19501 ttcaatttct gccatgctta attgatcagc gtctctaatt accggaacaa ctaaacctct
    19561 ttcagtagaa acagcaattc ctatatcata aaaaccatga taaacaatat cttgcccatc
    19621 aatggaagca ttcacggccg ggaatcgttt cagcgactct actactgctt ttgtgaaaaa
    19681 agacataaat ccaagtttta caccatgttt tttttcaaaa ctatccttat actgagaacg
    19741 catgtccata actgccttca aattcacttc gttaaaagtg gttaacatgg cagcgttgtg
    19801 ttgtgcttgt agtaaacgtt ccgcaatctt ggctcttagt ctcgtcatag ggacacgttt
    19861 ttcttccctg ccgccaaagg aaagtgctct catagaaggt tctttttgaa cttcagcggt
    19921 ttggtttgct ttttctctat tagattctat ataagataaa acgtcttctt tggttatcct
    19981 gccatcttta ccggtacctt gaatctgccc ggctttcaaa tcattttcag ccatcatccg
    20041 tcttactacc ggactggttg atttatcttc ttttgtgcta actgattcac tttcggaaat
    20101 ttttatttct tcttttttga caggtttctc ttctttctca gttttttgag attctacaga
    20161 aacactttga gaaatttttg ccagtaagtc tcctgaacca accgtatctc cggtattaaa
    20221 cagaatgtca gacaataccc catccacagg tgatggaact tcaagcacaa ctttatctgt
    20281 ttccagatcc actaggttct catcgcgaga tactttatca cccactttct tatgccacgc
    20341 agccactgtt gcatcagcta ctgactcggg tagaacaggt actttgactt caatagacat
    20401 ggttatacct tctcttaata ttatattgtt tagatttatt ttttaccaag taatgcttgc
    20461 tcaaccaaag caacttgttg ctccgcatgc aacccgggac taccaactgc aggtgcagca
    20521 gcaaactctc tgccagcata ttgcaaggtt tggtcagaac gcaagcaatc acgcatatta
    20581 tgctgagaag agaaccagac tccttggttt tgtggctctt cctgacacca gacaacttca
    20641 ttagcctttt gatatttctc caattcagcc attaatgctt ttttgggaaa tggatacaat
    20701 tgctctatac ggacaatcgc tacgtggttt aagtttttat cgcggcgcat ttgcaataaa
    20761 tcataataaa ccttaccaca gcataacacc acctttgtta ctttttgtgc gtccaaggca
    20821 tcgatttccg gaatcactgt gtgaaatttt cctttaaaca aagcttccaa aggtgaaaca
    20881 gccaatttat gtcgtaaaag acttttggga gtcatgacaa ttaaaggctt cctgaaatta
    20941 cgaataactt gtcttcttaa caaatgaaat atttgtgctg gagttgttgg agtgcatact
    21001 tgaatattgt gctgtgcaca aagctgcata taacgctcca atcgggcaga agagtgctca
    21061 gggccttgtc cttcatagcc atggggtaaa agcatcacca atccgcacag ccgcccccac
    21121 ttttgctcac cggaacttat aaattgatcg ataacaactt gtgctccatt tgcaaaatca
    21181 ccaaattgag cttcccaaat aaccaggaaa gatggctcag acgaagcaaa gccatattca
    21241 aaagctaata ccgcttcttc agaaagcact gaatctatta cagtaaaata acgtttggga
    21301 ctggttgaga tatgttccaa aggaataaaa gtatcgcctg tttcaatatc gtggagtacg
    21361 gcatgtctat gggcaaaagt tcctcgacca ctatcttgcc cagaaattct tactccgtag
    21421 ccttcatgta acaaactggc ataagccatg atctcggcat agccccaatt catagggatt
    21481 tcaccagcgg tcattttatt tcgttcagct aacaaacgct ccacaacggg atgcagtttc
    21541 attccatcag gcaatttgtt taattgggat gaaatttttt ccaattcttc cttgctaatg
    21601 gttgtgtcta ctttatccgt ccacttggca tttatataag gagtccaatc taaagattgc
    21661 tttccttcat aatcttcatg aaccaaatcg acaaccgctt tacccttatc caatgtttct
    21721 ctgtaggaat caactaactt gtctacttct gatttggtta ataaattagc gctgaccaat
    21781 tgttccccat atttttcacg taatgtgggc atggatttga tttttttata catctttggc
    21841 tgagtcacag aaggttcatc cgcttcatta tggccatgac gtctgtaaca gaccaagtca
    21901 attactatgt ctcgcttaaa cttcattcgg aaatcaaaag caacctgggt agcaaaaact
    21961 actgcctcag gatcatctcc attgacatga atgactggtg cctgaaccat tttggcaaca
    22021 tctgtacaat agagagttga acgggcatcc aaaggattgc tcgttgtaaa tcctatctga
    22081 ttgttgataa caatatggat tgttccacca gtacaatatc cacgcgcctg ggagaaatta
    22141 aaggtttcca taaccacacc ctgacctgca aaagcggcat cgccatgaat gacaatggga
    22201 actactttat cctttttagc caaatcgttg cgtcttccca aacgtgaacg tacagatcct
    22261 tcaactactg gccctataat ttccaagtgg gaagggttaa atgccaaagc caagtgcaca
    22321 atagcgcctg attctgtttt tatgtcagag gaaaaaccca gatgatactt cacatcacca
    22381 gttcgctcgt atttaatttt tccttcaaat tcttgaaata atagtcctgg ctctttacca
    22441 aggacattca ccaatacatt taggcgccct ctgtgtgcca ttccaatgac aagctctttc
    22501 acattgttta tacccgatct tctaatgagt tctttcatca ttggaattaa agaatctccc
    22561 ccctcaagag aaaatcgctt ttgaccaaca tatcgggttc cgagataacg ctccaaaccg
    22621 tctgccgcta tcaagtcttt aaggatattc aatttttcct gtggactgaa ttcaggacat
    22681 ccgcgtactg attccatttt gttttgtaac cattcagtga cttccgtatc agagatatgc
    22741 atatattcta tgcctatact gcggcagtat gtttcgcgaa gggcgttgta tatttccccc
    22801 aaggtcatct ctggcccatt aaaactggtg ccagcaaaaa aggtacgatt tacatctaca
    22861 tcggcaagat tatgataagc aagctccagc cgtggcactg gcatacgctc cgtcatttcc
    22921 aatggatcta gctttgcggc aagatgtcct aatgatctaa aatcattaat cagactggca
    22981 acctggtact gctgactgtc tgcaatttga attattttat taagcttctt atcagcatgc
    23041 tgcaaaaaat attcgcgaat gtccctatga gatacttctt tggtagcacc atttactttg
    23101 ggtaaagcgc taaataccgc tctccaatcc tctgacactg aatcagggtc tgcgaggtaa
    23161 tcctcataaa gactatcaac ataagccata cttcctccag acaaatagga agaagcccat
    23221 tctttttgca gatcagaact gctcattatc attctctcca aagggttcac ccagaaactt
    23281 tctgagtaac aaggactgat ttattacgtt tcctgcgtca acatttgcgt gcgaattttt
    23341 gcaatcgctt gcgtcggatt gagtcccttc gggcatacat tcgtgcaatt cataatagta
    23401 cgacaacgaa atacactgaa aggatcttgt aataaatcca aacgatgttg cgttgcttta
    23461 tcacgactgt ctgctaaaaa acgccttgct tgtaaaagtc cagcagggcc tacaaattta
    23521 tcaggattcc accagtaaga aggacatgaa ctggtacaac aagcgcataa aatgcactca
    23581 tacaagccat ccaattgtgc tcgctcttca ggagattgta acctctctcg agcaggcgct
    23641 acttcatcat tctgtaaata aggctcaatg cgctcatatt gctgataaaa ttgtgtcata
    23701 tcaactgcca aatcacgaat gactggaaaa cctggtaaag gacgtatgac aattttatct
    23761 gtttttaatt gtgaaatatg tgtaatgcaa gctaatccat tagtcccatt gatattcatc
    23821 ccgtcagagc cacatactcc ttctcgacat gaccgcctgt aagtaataga aggatcttgc
    23881 tcagctttca agcgctcaag caaagtaagt aacatgggat cgcttttagc cgggatttct
    23941 atctcataat ctttcatgta aggcttggca tccacctcag gattatagcg ataaatcgac
    24001 aggattaaat ttctactatc agccataaaa tatcctcatt agtaaacgcg ttctttcggc
    24061 tcaaaaggct cgacatactt gggtgaggta ttaaccggac gataatctat cacctcacct
    24121 tcctcaaaat acaatgtgtg tttaatccag tttgcatcat ctcgttttgg ataatcttcc
    24181 ctgctgtgcg ctcctctgct ttcagttcgc gcaattgcag ataaagccgt tgcataagct
    24241 gttgccatta aattatccaa ttccatagct tcaacgcgtt ctgtattaaa aatttgactt
    24301 ttatcatcaa gtttagcatg tgctaatcga tcgcgcagag cttgtaaacg tttcaatcct
    24361 gaagccatta cctcacctgt acggaatact ccaaaatctt cctgcattac tctttgcatt
    24421 tcatctcgta ttaccgcatg gctttcacca tcctttgagt tttcccagcg ctcataacgc
    24481 accagggaag ccgctacatc gtcttcactc acataagaca tatcaggcaa ttgatttgat
    24541 tgccataatt cttcaacatg tatcccggct gcacgaccaa acacaaccaa atccaataag
    24601 gaattaccgc ctaatcgatt ggcgccatgc accgaaacgc aggcacattc gcctaccgca
    24661 tacaatccct ccaccacatg ctctttgcca tcagttttag ttataacctg gccatgcatg
    24721 ttggtgggta ttcctcccat actgtagtgg caagttggaa caactggaat cggctcaaca
    24781 attggatcta caccggcaaa cttcattgat aactcgcgaa taccaggcaa gcgagacatg
    24841 atcaaatcag cgcctagatg atcaagcttt aatttaacat gatcgacgcc ttttggatca
    24901 aatcccttcc ctgcccgaat ttccaaagcc atagcgcgag cgaccacatc ccgggaagcc
    24961 aagtccttta ctctgggagc ataacgctcc ataaagcgtt caccatcttt gtttattaaa
    25021 tagccgcctt cacctcggca accctccgtg accagaacac cagcacccgc tatgccagtt
    25081 ggatgaaatt gccacatttc catgtcttga agaggtatac cagctcttag tgccattcca
    25141 aagccatcgc cagtattgat aaaagcattc gttgtcgatt gaaaaattct accggctccc
    25201 ccagtcgcca aaatacaaac tcgagtctga aaaaatacaa tctcgccagt ctccatacac
    25261 atggcagtaa cacctgcaat tcttccttgt gagtttttta ccagatcgag agcataccat
    25321 tcactaaata catgagtttt agcttttaaa ttctgttgat aaagggtatg cagcaaggca
    25381 tgcccggttc tatctgccgc agcacaggta cgggccgctt gttctccacc gaaatgtttt
    25441 gactggccac caaactgacg ttggtaaatt tttccattat ccattcgtga aaaaggtagc
    25501 cccatatgct ccagttcata aactgcttca gggccagttt tacacaaata ctctatacaa
    25561 tcctgatcac caatgtaatc agcgcctttc acggtatcat acatgtgcca acgccaatcg
    25621 tcttcatcag cattgcccaa agccgctgta ataccgcctt gagccgacac agtatgtgag
    25681 cgggttggaa atacttttga taacaacgct acttttaaac cagaatttgt catctggagt
    25741 gcagcacgca ttcctgcacc accagctcct ataattaccg catcaaatct gttacgtgcc
    25801 actgtcatgc tattgtcccc aaatgatcat aaggccccag ataaattgag taaggagcca
    25861 caaaacaact aataactgca ctgataaacg tataacagta catttcatat aatctgtagt
    25921 tactgtccaa atacctatcc aggcatgcaa tgtcaaagcc atcaatccaa ttgttgttgc
    25981 aatttgaaat gccttgttag taaacaaaag atgccattga gaaaaactta aatcaggatt
    26041 tgccaatata aatccaaaca aaaaaattaa ataggctgca aaatagacag cggtaactcg
    26101 ttgaattaac caatccttta acccatttcc tgttaaactg gtgacattgt ttaccatatc
    26161 cagattccta gaaaaattgc caaaataact gcaagaacta taattgaaac ggctgacata
    26221 cggccagcac gaagactctc accaaatccc atatccatta tcaggtgtct tatacctgcg
    26281 atgacatgat aaatcataga ggctccaaaa gcccatagca taagtttata gaaaggattg
    26341 gctaacattg ttttagcctg tacaaaagat tcctctgact gcaaggaaca accaagaata
    26401 aataatacga agggaaataa taaaaatatc agaactcctg aaatcctatg taatatcgat
    26461 gcgatagcca taggcggaaa tttcagactg cttaaatcaa gattgatcgg tcttttcttg
    26521 ttcactatta atttcttcct cataagaaaa tgtcatcaat atactttctt ctaaatattg
    26581 aatcccattc aattatttca cattcaccct ttagacttat tgagaaacat aattcattaa
    26641 gtatactgcg caacaaatgg ctttgaaaaa taaaaaaatt gggtcttaaa aactatttag
    26701 aattactaaa tttcaattca tgcatgggaa gtatagcact ctgtttttat cacgcaaagt
    26761 tcagtttata aggaaaatga atagtccatt ggccaattac aaaaacccgt actatgatta
    26821 cataatgtga gtaaatggaa gtctttatga tcacaaaaag acctatatat aatcaacaat
    26881 taaaatgtgt cgcctttgaa atattatcct gccgcaatgt aatgcttaat gaagaattaa
    26941 caaggcaact ttatgatctc atttaccaca cagacaccca attaccttta tttgttcctt
    27001 tttccctaaa aaaattgctt gagcaatttg aaacaccaat caataacccc attattttaa
    27061 aattatccgc agatgaaatc gaatcagttt attcactaac tgaactacaa gattctctat
    27121 tttctattgc tttgctaatt aatacccctc aacaattggc ttggctaaat tttgccgaat
    27181 acataggact gactgagcag ttaatgagta aatcggatgt aactaaagta gtacaataca
    27241 gtaaggcaaa aaatcgtaaa atcattgctt atgatctaaa tcaacacgtt aattttgaaa
    27301 aatgtaaagc gatgaccatg gattattact gtggtgattt cctgcttaac tccattgcag
    27361 aggaaggcac agaaatagcg gcaaacaaat taaatgtact tcaactcatc caggaattac
    27421 aaaaagaaga ttgcgattta aacgagatca ctcatattat ccaagctgat ccattactaa
    27481 gctatcaact tctaaaactg gtcaattcag ttggattttc cagcggacca agcatagaat
    27541 ccatcgatca agccgttgca aggcttggca tcatcaacct gaaaaaatgg gttatgctgt
    27601 tttccatgaa aaatatctct gataaaccta tagaagtatt ggagtcaggt ttaatcagag
    27661 cccatatggc ggaagaactc gctaaaaaaa gctcgaatat tttcagtcaa agtgcctaca
    27721 ctgcaggatt attatccata ttagactgtt tattaaacaa acccatgcca gcattggtag
    27781 aacaaattac tctggctgag gagataaaag atgctctgac aaataaatca ggaccactag
    27841 gagatctatt gtctttggta atcgcttatg aagaagggca ttgggaagaa gtaactcaac
    27901 ttaacatcaa tggaattgat ttaagtcaat tatatattga cagtttagcc ttggtaagcc
    27961 agggtacaaa aatcatgagt aactgattgc gcaacaattt aaacaatatt ctttttattt
    28021 ttctatacct gacgcaagct tctatttaag taacaaaaaa tttagaatgt gttttcctaa
    28081 atgattataa
//
LOCUS       DACVWI010000020        27780 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.020, whole genome shotgun sequence.
ACCESSION   DACVWI010000020 DACVWI010000000
VERSION     DACVWI010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 27780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27780
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.020"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            338..3214
                     /gene="rapA"
                     /locus_tag="JBH85_03215"
     CDS             338..3214
                     /gene="rapA"
                     /locus_tag="JBH85_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HAU0945200.1"
                     /translation="MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYA
                     IDNAPLSRIVYKTGEEILTNDQQRIKVTSIQEQDGVLLYTGNDDLGNVAQVSELALNC
                     FIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIA
                     YEVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIIVPNSLIHQWFVEML
                     RRFNLHFSIIGPNQYDAMPSTLDELEDNDNPIEPASEDGNLFEGEQLVLTSLDFLMEN
                     ETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSARSTGLLLLTATPEQVG
                     MKSHFARLRLLDPARFYDFSAFVNEEKQYHEINKIVQDLMDYKEKNGVDELNPQLHSH
                     LKQLLGKEAPAGINATIKELLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPALYS
                     EIIRESNLIHLYPETLLNNDSWIEHDPRVQWLVNKINELRPEKILVICAKAKTAISLE
                     QYLKLRTGIRSTLFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNFQFSHHL
                     VLFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSC
                     SVGFSIFEVFENRLTPVLSSPLQDISEQSLEKLIADTQLHTQHIKEALNAGRDRLLEL
                     NSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGIDQEYHSENAEILRPGNHMKTA
                     HFPGLKEDGMTVTYSRSKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIK
                     SIKPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSGILSYEQLNNLC
                     QPLKRHLGYPVIKQVREEIESILQQTNKIAEDQMKLFIEEAKSTMELTTSQEVNRLES
                     LQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS"
     gene            complement(3328..4731)
                     /gene="ankH"
                     /locus_tag="JBH85_03220"
     CDS             complement(3328..4731)
                     /gene="ankH"
                     /locus_tag="JBH85_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkH/LegA3"
                     /protein_id="HAU0945201.1"
                     /translation="MSIANDIISHRMPDFDAYLRAGESLDDIDEYGFTPLIECAITRQ
                     IKIAEQLIARKVDINKPDVTGRTPLHWAVDNNDLDMTKLLLTYGADPNAYTRNGLCVL
                     VYPVLRGQDAIKQLLYHHGAKLDFALDFINAKLIGHRFELQGDVDIVNAKGEFIELDY
                     EGFILEFTVAVVKDSLRRFISSYSTRHLRDYFPYIHNIMDAFTDAAELLQYQHHPRLG
                     EQHFKRIAALLKAPMLILPAASRGHALCFVRYHQWWAKIDRGENSLQEGSVNIYRITR
                     PEALTINFIHDFLYKKQNRRYYHQMINQQLGLLPFAQMPISSQISGNCSWANVQAVVP
                     VAYSMQELTSVENFKPDVALSLYDEWVEWDKDRALDECIQRFYLASPERKASIAAILG
                     GILFQACDHANKRHLERAEKILNILILDEYYYVLSSYLEEYCIKRLTRKGNNLLKILD
                     DCGINPNIGVNPVATGL"
     gene            complement(4732..5514)
                     /locus_tag="JBH85_03225"
     CDS             complement(4732..5514)
                     /locus_tag="JBH85_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HAU0945202.1"
                     /translation="MKKMAKEYYLSDEIEEIVLASTVLSYSRPNLSSKSFNDLKNGKT
                     PWEAELDLKGLNVESARKSLYQFIQTQIKNNKQCVLIIHGADNSQDKPPLMKNLVNRW
                     LPQINEVLAFHSAKPKDGGSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMER
                     RRRLAEQQGERRFASVKAREHPEEEIKVAPEGELQNNILQHPELNSQRFDGIDPNLNP
                     EPPLNTEARREFDNERREQDKEKQLRLGNMPKFTTAPTPRGP"
     gene            complement(5653..6675)
                     /locus_tag="JBH85_03230"
     CDS             complement(5653..6675)
                     /locus_tag="JBH85_03230"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HAU0945203.1"
                     /translation="MSRHLNVAIVGATGAVGETFLTVLEERNFPIKSLYPLASSRSVG
                     KTVTFRDQELDVLDLAEFDFSKVDLALFSAGGAVSKEYAPKAVAAGCVVVDNTSCFRY
                     EDDIPLVVPEVNPHRIADYTKRGIIANPNCSTIQMVVALKPIYDAVGISRINVATYQS
                     VSGTGKKAISELVAQVGDLLNGRPANVQVYPQQIAFNALPHIDQFEDNGYTREEMKMV
                     WETRKIMEDDSIMVNPTAVRVPVIYGHSEAVHLELKKPLTADDARALLAKAPGVTVVD
                     NLSKASYPTAIKNAVGHDDVFVGRIRQDISHPCGLNLWIVADNIRKGAATNAVQIAEI
                     LQKEFL"
     gene            complement(6785..7843)
                     /gene="aroC"
                     /locus_tag="JBH85_03235"
     CDS             complement(6785..7843)
                     /gene="aroC"
                     /locus_tag="JBH85_03235"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HAU0945204.1"
                     /translation="MSGNTFGALFTVTTFGESHGPAIGCVVDGCPPGMSLTEADIQPF
                     LDKRKPGQSKYTTQRREEDKVQILSGVFDGKTTGAPIALLIQNTDQRSRDYEDIKNLF
                     RPGHADFTYHYKYGHRDYRGGGRSSARETAARVAAGAIARLYLKRYLNLDIIGYLQQM
                     GDLKLQFENENEINKNPFFCPNNKQIQELADYVDRLRRQGDSVGARVKILARGVPTGL
                     GDPVFDKLDATLAYAMMSINAVKGVEIGAGFNAVEQLGSHHRDQMTAKGFLSNHAGGI
                     LGGIATGQPIEVSIALKPTSSITTPGQTINTEGEEVTVVTKGRHDPCVGIRAVPIAEA
                     MMALVLMDHYLRHKAQCK"
     gene            complement(7855..8787)
                     /gene="prmB"
                     /locus_tag="JBH85_03240"
     CDS             complement(7855..8787)
                     /gene="prmB"
                     /locus_tag="JBH85_03240"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HAU0945205.1"
                     /translation="MVMVDTLVSSYFSKETEELVTILDFLRFSLSCAENAQLFYGHGT
                     DNAWDDMRSLILRSLSLPYDVDPFLLNARLTTSERKHLCNQLDKRINQRVPVPYLIKE
                     AYFCDLPFYVDERVLIPRSPIGELINNQFSPWIEAERVHHVLDLCTGSGCIAIACCYA
                     FPEAQVDAVDISNQALAVATINCERHDVGDQLALIESDCFTALSGKQYDLIVSNPPYV
                     GKEEMQTLPDEYRHEPVLALETGNNGLAIIEKILKNAHAYLSEHGILVVEVGNSEEAL
                     CETYPMVPFTWLEMSNGGQGVFLLTKQQLEDYFK"
     gene            8952..9521
                     /locus_tag="JBH85_03245"
     CDS             8952..9521
                     /locus_tag="JBH85_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HAU0945206.1"
                     /translation="MTDDFLSDEDKALFRHHMRSVKPLNEKTKRVKNPTQPTHEKKTT
                     TFKSQPVPKEEYFLSDFIRDTVQPDTILSFSEPGIPNQRFRALKNGQIPWEAKLDLHG
                     LKAEAARQALYDFIQTQSLNNKRCLLIIHGKGGHQGAPPVIKNLINRWLPQFSQVLAF
                     HSALPKDGGLGAVYVLLKRNREKDEQGNY"
     gene            9594..10013
                     /locus_tag="JBH85_03250"
     CDS             9594..10013
                     /locus_tag="JBH85_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HAU0945207.1"
                     /translation="MEKLGQFIINHWQLWLAFVVVVFLIFINEILSQRKKAKEVSPQS
                     LVDLMNNGNAIVIDIRDKESFKNGHIINSMNVNPDDFEQQKMSKYKDKPIILVCARGL
                     QSPTLAMKIRNQGYQPLVLSGGIQAWQNADLPLVKGK"
     gene            10018..10272
                     /gene="grxC"
                     /locus_tag="JBH85_03255"
     CDS             10018..10272
                     /gene="grxC"
                     /locus_tag="JBH85_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HAU0945208.1"
                     /translation="MNEVILYTTGYCPYCIKAKELLDRKKVIYTEIRVDLQPELREEM
                     IQKSGRRTVPQIFINGQAIGGCDDLYALEAQGTLNELLKK"
     gene            10282..10770
                     /gene="secB"
                     /locus_tag="JBH85_03260"
     CDS             10282..10770
                     /gene="secB"
                     /locus_tag="JBH85_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HAU0945209.1"
                     /translation="MTEQLNTNQQNDEAQFMIQRIYIKDLSYETPNTPAVFQQQWEPE
                     LKLDLNTTTTQLDKNVYEVVLTVTATVMNQKTTAFLVEVKQAGIFTIQGAAASQLDHL
                     LHSFCPSILFPYAREAITSQVIRGSFPQLVLAPINFDALYMQQLEEKQKATGAKDETV
                     SH"
     gene            10694..11761
                     /locus_tag="JBH85_03265"
     CDS             10694..11761
                     /locus_tag="JBH85_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HAU0945210.1"
                     /translation="MMLYICSSWKKNKKQLELKTRLFLTKMNKKTIAMLGAGSWGTAV
                     AIHLAKIGHKTLLWSHNPQHVALMAEQHSNPAYLPGIPFPENLIPSDNLIECVQSADY
                     VIIAVPSHAFAEIINKIPKPTQGLAWLTKGVDPASHELLSQLVASRFGVDFPIAVISG
                     PSFAKEVARFLPTALTLASNNTNYQKKMHQLFHHDNIRVYLSDDLIGVQLCGAVKNIL
                     AIACGISDGLGYGANAKAALITRGLAEMTRLGLSMGARQDTFLGLAGVGDLVLTCTDD
                     QSRNRRFGLLLGREVPIPEAEHQIGQVVEGKHNAAQICAIANKNKVEMPICEQINALL
                     HGIVHAQEAVNNLMSRPAKEE"
     gene            complement(11847..12713)
                     /locus_tag="JBH85_03270"
     CDS             complement(11847..12713)
                     /locus_tag="JBH85_03270"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HAU0945211.1"
                     /translation="MPNKRARKQMTRRSNQLNSNKDLAIGVFDSGMGGLTVLRALRDK
                     LPHESFVYLGDTARLPYGTKSPDTVKQYAMQMAKILVERRIKALVIACNTATTAALPH
                     LQSMLTDIPVLGVVAPGAAAAVSATKNHRIAVLATETTIASRAYHDLIIKNLPEAVVS
                     SRACSVLVALAEEGMVTNAVAREALKHYLDDFSDEDAVLLGCTHFPVFKPLLSSLLPK
                     DVAIVDSAQATAISLYELLQNQNLHNDNLEAPPRINYLVTDSINRFQKVGEIFLGEQL
                     SLSDIELIDAMG"
     gene            complement(12758..16261)
                     /gene="ceg28"
                     /locus_tag="JBH85_03275"
     CDS             complement(12758..16261)
                     /gene="ceg28"
                     /locus_tag="JBH85_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg28"
                     /protein_id="HAU0945212.1"
                     /translation="MILEEYIRMAKNKEFFDALEEIAESAKNDETLRNELAKVLDDIL
                     KTDPSDPEAFRKIVAEHQEFWDEHDPSLMEFNEGRFFGKSRKQYLKSDDFLNSTDPTY
                     NFQKLHQFAAEQRVKLGLEKSDTDTLVAILKNNPEECRAYIESKKPGLGNFSEGNVHG
                     WLKEEYTPTIPPKAINKSTGVLSDEAIKRIKEQARDLLLLKLINSSGNTQLLKDLRDA
                     MSKPEAERAANALGFPTEGNGVLFLSREVVDALEERVEKLEQEAAKRGFDSYVQSLSH
                     NALLAKKNGLESTTAAGFKNSLDEPYKTYLPESEWERAQGVLGARYLQAVLSSGTQNL
                     KDALNAKDANALITELKKPALLGPHDYIDKAVTEENLGSLKKNMMKSFINNIKDETNL
                     KALDALKALDGAKNLDKFKEVLGKLGITPADWVKDTDLKDMKQWARARQFELEINRVS
                     SLGSGAHSKLMSTLTKLPVEKQREILAKPQQLRHLMNAYESHVAEHYLGKNASGIAEL
                     LTENKRLEGFRAIHNAEVARVLANFKPEITLNDKQVAAINQALTTANSNPNTYTQATD
                     YKILIDAIKTQSGSVNQKDFYNAFNLNDDGRAFTSSTPRKDEMSKQQQHNQHIYAEYN
                     STSNSGNKKLLAVLLSIEKPVTFSKDIVNRFLRPLKDSETPQDYADTLFGENPTNPAN
                     KKFKDDLLRELTPTVFNEIKNDLRKQELLDTNPAHVMTAIKALSTELESIKGITGPIR
                     TNADKLKFINDIDPVHLYNPTFQGTARSKAAQMKERYEGLSRDCGLVVDQLRRQVVAL
                     EGHLKSLPKEGEFKAAGLTLEQKAEIKKLRTDLEAELSAVREDLDFYKKIQGKLETIV
                     KEVDVAAKGKMHYYYNSEGIKRHPPVSRDQIPPLPNVPNPSLRSSTTATTGSNGRIQE
                     FLVGEKIPEGQIVVVDVSHKTAPKSGAPVETIGRYTQDNNVPDQVTSKKGEISKVPGS
                     KFEILQFPTQVPPPNPPSGDPLVEAKVNFSMAMAADILASLDSPPTKDKPIRLRGSNP
                     EELEYLYTALVILGEKNPKFKFNRDAIEVNSAVFHPDNVKGRLWGFSSNSLYSQVFTN
                     TGLTETQNIIQSKIKHMQQMTDEKFSPQKEREKVDSKVQEITDKQSKMKKELNPVHKT
                     TERTIEQEGPAPESPSTGMRK"
     gene            16383..16685
                     /locus_tag="JBH85_03280"
     CDS             16383..16685
                     /locus_tag="JBH85_03280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945213.1"
                     /translation="MRIKIILCGLILTNLTYAQGCIVGGQASQPRYVCFDGRTLDLTE
                     TGLVWNAKRGCFISSVPCCNYNATHYAYHPNPAKIGGAYARCRHDYPFTLGQMQTH"
     gene            complement(16689..17981)
                     /locus_tag="JBH85_03285"
     CDS             complement(16689..17981)
                     /locus_tag="JBH85_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavohemoglobin expression-modulating QEGLA
                     motif protein"
                     /protein_id="HAU0945214.1"
                     /translation="MSPSESGELSIIQELSQRIVEAQRQIRILDSIKWDESVKQEFFK
                     FKGKKLPSIDKAYYDGKPLPFKVKDKQEEFRIILRDAQNQLGQYSTVTRLIRRQCEEY
                     SRAAQMLSLRGTPSFSEMAMELYGSPDDVFYVGGPRMCEMGSLLFDVLKSLQVQLQSQ
                     ADIKRYTPIQAQEILQERLGKFFDKHPGRVSVMVSDDMIADASAGADSIKLSQNAMFS
                     DRDLRYLEVHEGWVHVGTTLNGALQPNCFFLSKGSPSSSVIQEGLAVITEVVTFSSYP
                     GRMLKITNRVIALDKVTQGADFIDIYRYFLECGLSEEDSYNQSVRIFRGSTPTGGPFT
                     KDLSYAKGFVLIYNYIRFAIGQKRVDTIPLLFTGKLVLDDLPLLGELKEREILTDPVY
                     LPPPFQDLAALSAWMSFSLYLNQFDLNEIQKNFRFLLV"
     gene            complement(17991..18221)
                     /locus_tag="JBH85_03290"
     CDS             complement(17991..18221)
                     /locus_tag="JBH85_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945215.1"
                     /translation="MKKLSFIVLAALVLTACNSRYASNGENLYLQSRNGEALVVPPPL
                     TSANISNFYDLPQQTQDARVSIAPPVEDITTS"
     gene            complement(18236..19108)
                     /locus_tag="JBH85_03295"
     CDS             complement(18236..19108)
                     /locus_tag="JBH85_03295"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HAU0945216.1"
                     /translation="MFSGSIVALVTPMRNDSVDVHHLRELVEFHIAKGTHALVAAGTT
                     GEAGTLSHSEKLLVIKTVIEQAKERVPVIAGTAMNATKDCIELTQQAMEYGAHAALIM
                     TPAYIKPTQEGLYLHYSHIAQSVAIPIILYNVPGRTACDMLPETVARLAKISNIIGIK
                     EATGQMTRLQQILRLCEGSIDVYSGDDLTAAQWLLAGAKGVISVTANVAAKLMAKMCD
                     LAMDDDQAGCLRIQEQLMPLHELLFVESNPIPVKWAMNKMGLIGGELRLPMTELSEKH
                     HQALEKVLKNLELI"
     gene            19287..19571
                     /locus_tag="JBH85_03300"
     CDS             19287..19571
                     /locus_tag="JBH85_03300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945217.1"
                     /translation="MKTTTYKRKFTMKKIIPTLFFIGISTTTMVGCTNTQVGTAVGAA
                     AGAGIGYGVSGGSALGTAIGAGAGALVGGAIGQEQDRREYYYYSGYPYYY"
     gene            19849..20631
                     /locus_tag="JBH85_03305"
     CDS             19849..20631
                     /locus_tag="JBH85_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HAU0945218.1"
                     /translation="MKLKNKVAIVTGAASGIGKEIALVYAKEGAKVAIADLNLDQASH
                     VAEEIKSSGGQAMAVAMNVTDEAQVNQGVDKVADHFGGVDVLVSNAGIQIIESVDKLA
                     FSDWKRMLAIHLDGAFLTTKACLKYMYASGNGGSIIYMGSVHSKEASVLKAPYVTAKH
                     GLLGLCKVVAKEGGTHKVRANVICPGFVRTPLVDKQIPEQAKELGISEEDVIKKVMLK
                     ETVDGEFTTTDDVAQTALFFASFESNALTGQSLVVSHGWFME"
     gene            20638..21798
                     /locus_tag="JBH85_03310"
     CDS             20638..21798
                     /locus_tag="JBH85_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HAU0945219.1"
                     /translation="MTRTKKSARQIEYRHIACSFQGGGALGAYQAGVLHALNEVGYHP
                     HWYVGTSIGAINAAIAAGNSDKERIEKMYQFWESIATPSAVNESTLLDDKISRKIQHL
                     IAAHSALLLGQPGFFVPRFPSPDFGWHNSPDLLSYYDTSPLHKSLEKFIDFDRLNNNK
                     LTRISVGAVEVSSGMMTYFDSYKQKIGPEHIMASGALPPGFPAVKVDGKYYWDGGISS
                     NSPVNYILNHNNQKQMLCFMIHLFDSFGMVPTSMDEVLKRKKDIEFSSRFIKLINLHK
                     EIHDLRNTIHILSNHISPEEKSKPEIRECIKKGRPSAISLVRFLYEHDETELSSKDYE
                     FSKKSIHERIQKGYDDGKNAIKKSPWNQSVPMTEGIALYDMSAKDTMKKYQD"
     gene            21828..22733
                     /gene="motA"
                     /locus_tag="JBH85_03315"
     CDS             21828..22733
                     /gene="motA"
                     /locus_tag="JBH85_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HAU0945220.1"
                     /translation="MLIIVGYIVILLCVFGGFSLTGGHLAAIFQPVELLIIGGAAMGS
                     FIVGNNITVLKSVLKSLPATFRGQKSAKQASNDLLSLLYHLLSKARQQGLMSLENDID
                     EPDKSPIFTGYPNLMSNHHLIEFICDYLRLIITSNMQPFQLESLMDMEIESHHEEEMI
                     PANAITKLADAMPAFGIVAAVLGVVHTMESISLPPSELGVLIAHALVGTFLGILIGYG
                     FVGPIATAMEQNANQNQLMLQCIKVTILASLHNNPPIIATEFGRKVLFTSQRPSFNQL
                     NDEIKNAKTAQTTTQNSEATEATSS"
     gene            22743..23681
                     /gene="motB"
                     /locus_tag="JBH85_03320"
     CDS             22743..23681
                     /gene="motB"
                     /locus_tag="JBH85_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HAU0945221.1"
                     /translation="MSEINDISDPINDDLEKKDKREKKEKTTHYTPIIRKIKKNDHKH
                     HGGSWKIAFADFVTAMMAFFLLMWLVASLNKAQKAGIAEYFKQPMKVALFGGESMGNR
                     KATIKGGGPNIEDTDGQVSATNKPLINESIAKDKEIVESQANEIKKLEELKSEINLSM
                     EKDPSLAGLKKQLLMDVVSDGLRIQLIDNQKKPMFDVGSDKINPEIEPILANIAKLLN
                     SVPNKITIQGHTDANPYHNPEELEYTNWELSAQRANAARRALIKAGMDENKVMTVTGY
                     SSTILLDKKNPYNPENRRISIIVMKKGAENKIKVNK"
     gene            complement(23747..24220)
                     /locus_tag="JBH85_03325"
     CDS             complement(23747..24220)
                     /locus_tag="JBH85_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945222.1"
                     /translation="MFLEPGLINGVVMKRIILFMIAWSLLNSAYSSHSLPSHASILFT
                     LANTERSNSCPALLHNAKVVVDYDYNFERNMGLAHLRQLQSTKWSETLHPLGLSNYYA
                     FMSDMKPKAVQIEGGEVTIYRIIFHLYKNGDSRIYLMINQDGECIMSSDVVNVNL"
     gene            24399..25760
                     /locus_tag="JBH85_03330"
     CDS             24399..25760
                     /locus_tag="JBH85_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HAU0945223.1"
                     /translation="MLILINLRGAILLVSIKTRMFFMSSNESAAIVSPIVNQKLSQWK
                     KQDTIWMLSLYGTAIGAGTLFLPIDAGLNGILPLIIMTILAFPMTYYSHRALCRFVLS
                     GSSSHNDITDVVEEHFGSFAGKMLTILYFFAIYPILLMYSVAITNTTESFLINQMGIT
                     PPPRALLAIILILGLMGIVRLGQEIIVKSMSVLVYPFATILFLLSLYLIPNWNNAIFI
                     QSNSLHANGGHGLLMTLWLIIPVMVFSFNHSPIISSFAVNQKQQYGSQADEKSSLIMK
                     YSHLMMVFSVMFFVFSCVLSLSPQDLLQAKQQNISILSYLANHFNTPIMAYIAPVIAF
                     IAISKSFLGHYLGAKEGLSGIIVKSLKSTTGKTINKNSLHRIIEIFMILTCWVVATIN
                     PNILKMIETLGGPIIAVLLFIMPMYAIAKVPAMKKYNNQISNVFVTVMGIISISAIIY
                     GLI"
     gene            complement(25853..27778)
                     /gene="ankK"
                     /locus_tag="JBH85_03335"
     CDS             complement(25853..27778)
                     /gene="ankK"
                     /locus_tag="JBH85_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkK/LegA5"
                     /protein_id="HAU0945224.1"
                     /translation="MPRVYNLKDIYLGAPSFSGHEVYLDAVYYPSDSSEKNFRVIYKK
                     NKFGNANLSRMEVAFSQLARLFLDNGLTSFQKMVVNDANKVQGLIVEHLNYVIENKEG
                     LKQPFYTLNAPRNGCDYTEKRVTSSNEIPFYFLDKLPQGFFNQLLAAEKNNKLSIDYA
                     SLASILATSYTLEEDDLHKGNFGFYLVKKQGKPRVVFFKIDHDLMFVDSIMSFTTRRF
                     CHLFDGCDAFDITEEDLLKFPNLKYSANGYWPTKTSIFYKPWDNKDYRTYAEIQAFAD
                     LSHVEEFNKAKWRSFYKHILISQSQMEATLKACFDENNSSDRAHISLVIQAMLARQAR
                     LKAMLFSLKDFRDFILSQNGKERDLLCHEILNNLPEEERKSFENEIRQSLDYSHNLCC
                     SGLFEDGDTPLHIAIKSGDYRYDETIGMYGQFINTKNSSGKTPLDIALQMAGQSKVHP
                     ADVRKDYRFIMKHLLANGANQTKQFEEFDKIENIRSYQFHTPYLNKAIKAKTYHELKE
                     VLRDIGEDHQYCLKFKKMLAVECISEFIKANQDNLSLRGILLKLKKEVDGKGTKSENA
                     ALMYIRQLRSRLWIVRQIRGLYGWSTTQGEIDYMIDKELARLDTKDLKRLSLFDSRDS
                     STLDNVFLDISLSKNKI"
BASE COUNT         8496 a         5855 c         5075 g         8354 t
ORIGIN      
        1 atttgccttc acatgcaaat aaaacaatca atttgccaca aaaattattt gtgtaacttg
       61 tatcaaaaat tgatacaatc acgcattaaa acatacagtt cattttcaat tatttaataa
      121 tgaacgtgag ttatggataa gataggtcgt tatctccaat cgttcgggct gaggaggcat
      181 ttatgccgtc tcgaagcctt atatggaatt ttaatgtttc ataccaaggc ttcgagacga
      241 tgcttaggca tctcctcagc ccgaacgaac cctgcatatc gactgcttct tatataatcc
      301 ttatccataa ttcatgttaa tgaggaagtt tctctaaatg acatttcgca ttggtcaacg
      361 ctggataagt aataccgaat cacaactggg tttgggcatt attactgaag tagatggcag
      421 acaagtttct atcagtttcc cagctgctgg ggaggataga atttatgcca tagataatgc
      481 gccattaagc cgcatagtct ataaaacagg tgaagaaata cttaccaatg atcagcaaag
      541 aataaaagta acttccatcc aggaacaaga tggtgtttta ctgtatacag gaaatgacga
      601 cttgggaaat gtggctcaag ttagtgagct ggcacttaat tgttttatca aacttaactc
      661 ccctcaacaa aggctcttca gcggattatt ggacaaacta aatgctttta aactcagaat
      721 taaaacatta gagcatttag gccgattaca acagtcaaaa gcaagaggcc tattaggttc
      781 acggactaac caccttatcc accaaatcta tatcgcttat gaagttgccc aaagatttgc
      841 tcccagagtg atgcttgccg acgaggttgg attgggaaaa accattgaag cgggaatgat
      901 tttgcattat caactgcata ctggccgtgc ctcacgcgta ttaatcattg ttccaaattc
      961 attaattcac caatggtttg tcgaaatgtt aaggaggttc aatctgcatt tctctatcat
     1021 tggtccaaat caatacgatg ccatgccatc cacacttgat gagttggaag ataacgacaa
     1081 ccctatcgag ccagcatcag aagatggcaa tctgtttgaa ggtgaacaac tggtattaac
     1141 cagcctggat ttccttatgg aaaatgaaac ggcacgtcaa caggcattag ctgcgcaatg
     1201 ggatcttctg gtagtagatg aggcgcatca tctttattgg tcggaagact cacaaagtcc
     1261 cgaatacacg ttcattgaaa aattatcagc tcgaagcaca ggcctgcttc ttcttactgc
     1321 gactcctgaa caagttggaa tgaagagtca tttcgctcgt cttcgtctac ttgatccagc
     1381 acgcttttat gatttttcag cctttgtaaa tgaagaaaag caataccatg aaattaataa
     1441 aatagttcag gatctcatgg attataagga aaaaaatggc gtagatgagt taaatcccca
     1501 actccactct catttaaaac aactcttggg taaagaagct cctgctggca ttaatgcaac
     1561 gatcaaagaa ttgcttgata gatttggcac aggtcgagta ctttttcgca atactcgtgc
     1621 agcgattaaa ggatttcccg aaagaagaat acaccctgtc gcattaacat gcccagcgct
     1681 ttattccgag ataatcagag aatccaactt aatccatctt taccctgaaa ctttgcttaa
     1741 taatgactcc tggatagagc atgacccccg agtgcaatgg cttgttaaca aaattaatga
     1801 attacgtccg gaaaaaattc tggtaatctg cgcaaaggca aaaacagcca ttagtctgga
     1861 acagtattta aaattaagaa caggcattcg aagtacttta tttcatgaag gacttaccat
     1921 tatagagcgt gacagagccg ccgcttattt tgcagaacaa gaaaatggtg cacaggttct
     1981 tgtttgttcc gagataggaa gtgagggaag aaacttccag ttttcccatc atttggtttt
     2041 gtttgatttg ccattaaacc ctgacctttt agagcagcgt atcgggcgtt tggatcgtat
     2101 tggtcaaaat catcccattg aaattcatgt accctattta gcgggtaccg cgcaggaaaa
     2161 gctatttcgc tggtatcacg aaggaatcaa cattcttcaa caaagctgtt ctgttggctt
     2221 ttcaattttt gaagtttttg aaaatcggct gacacctgtt ttatccagtc ccctacagga
     2281 tattagcgag caatcattag agaagcttat tgctgatact caattgcata cccagcatat
     2341 taaggaagcc cttaatgcag gaagagatag attactagaa ttaaactcct gtaattacac
     2401 tatagggaaa gaactcattg aagcgataga agcagaagaa aattgccttg aacttgaaaa
     2461 ttacatgtcg caagtgtatc aggagtatgg aattgatcag gagtatcatt ccgagaatgc
     2521 cgaaatattg cgccctggta accacatgaa aaccgctcat tttcctgggc taaaagaaga
     2581 cggcatgacc gtcacttatt ctcgctctaa agcccttgtt cgggaagaca tggagttttt
     2641 aagttgggaa caccccatgg tttacgacac tatggaaatg atcctggagt cagaacttgg
     2701 caacgccaca gtgactacta tttcaatcaa aagcataaaa ccgggtaccc tcttcctgga
     2761 aactttttat accattaatt cttccgcccc taaatactta caacttgacc gatttattcc
     2821 ttcattgcca attcgaattt tgatggatac taccggtaaa aatttatcag gcattttaag
     2881 ttatgagcag cttaataatc tgtgccaacc acttaaacgt catctgggtt accctgttat
     2941 taaacaagtt cgtgaagaga ttgaatccat tctgcaacaa accaacaaaa tcgcagaaga
     3001 tcagatgaaa ttatttattg aagaagcaaa atcaacgatg gagctaacga cttctcaaga
     3061 agttaatcga ctggaatcct tgcaaaaaat taatcccgcc attcgggatg aagaaattga
     3121 gttctttaaa aagaaaattt cagagagtaa ttacttcatt aatagctcca ctttaaagct
     3181 tcaagcgatt cgggttgtaa ttaatgtcag ttagttaatc atcccttgac aaattgacac
     3241 gataataaaa gaaattgctt gtcttacagg ctggacgctg atttcacaaa atcaacaact
     3301 attagattat taacggaaaa tttctgttta taggcctgtc gcaacaggat tgacgccaat
     3361 attaggatta atcccacaat catccagaat ttttaataaa ttatttcctt tacgggttaa
     3421 tcgtttaata cagtattctt ccagataact gctcaaaaca taataatatt cgtctaaaat
     3481 caaaatatta agaattttct ccgctctttc cagatgacgc ttgttagcgt gatcacaagc
     3541 ctgaaacaaa atgcctccca agattgcagc aatacttgcc ttacgttcag gactggctaa
     3601 ataaaatcgt tgtatgcatt catcaagagc cctgtcttta tcccactcga cccactcatc
     3661 atatagtgat aaggccacat caggtttaaa attttctacg ctggtcagct cctgcataga
     3721 atacgcgact ggtacaacag cttgcacatt agcccacgaa caatttccac taatttgaga
     3781 actaattggc atttgagcaa aaggaagcag ccccaattgt tgattaatca tttgatgata
     3841 atatcgtctg ttttgttttt tatataaaaa atcatggata aaattgattg ttagtgcctc
     3901 tggcctggtt attcggtaaa tattaacgct tccttcttgt aagctatttt cacctctgtc
     3961 aatttttgcc caccactggt gataacggac aaagcataag gcatggccac gactcgccgc
     4021 aggaagaatc agcatagggg cttttaacaa agcagcaata cgtttgaaat gctgttcgcc
     4081 aagcctggga tgatgttgat actgcaacag ctctgccgca tcagtaaaag catccataat
     4141 attatgaata tatggaaaat aatcccttaa atgccgagtc gaataactac tgataaatct
     4201 ccgcagagag tcttttacaa cagcaacagt gaattccaaa ataaaccctt cataatcaag
     4261 ttcgatgaat tcgcctttcg cattgacaat atccacatcg ccttgcaatt caaatcgatg
     4321 accaatcaat ttggcattaa taaaatcaag agcaaaatca agcttcgcgc catgatgata
     4381 taacaactgc tttattgcat cttggccacg caaaaccgga taaaccaaca cacaaagacc
     4441 attacgagtg taggcattag gatcagcgcc gtaggttaat aagagtttgg tcatatccaa
     4501 atcattattg tccactgccc aatgtaatgg agtgcgtcct gtgacgtctg gcttgttgat
     4561 atccactttg cgagcaatta actgctctgc tattttaatt tgtcgtgtaa tagcacactc
     4621 tatgagggga gtaaaaccat attcatcgat atcatccaaa gattcccctg cacgcagata
     4681 agcatcaaaa tcaggcattc tatgactgat aatatcgttt gcaatactca tttagggccc
     4741 ccggggggta ggtgctgtag taaattttgg catattgcct aagcgtaatt gtttttcttt
     4801 atcctgttct cttctctcat tatcaaactc ccttcttgct tctgtattaa gcggcggttc
     4861 agggtttaaa ttaggatcta ttccatcaaa acgctgacta ttcaattcag ggtgttgcaa
     4921 tatattgttt tgtaactccc cctcgggagc aaccttgatt tcttcttcag ggtgttcacg
     4981 cgctttaaca gaagcaaacc ttctctctcc ctgctgttca gccaaacgtc ttcgtctttc
     5041 cattgctttt gtttcagcca ccaggaaagt actttcactg cgattggaag gcaatcgtgt
     5101 gggtaactca acatgaaaca ctgagcccaa caagacataa acagctgcag aaccaccatc
     5161 cttgggtttg gcgctatgaa atgccaatac ctcattgatc tgaggcaacc accgattcac
     5221 cagatttttc attaaaggcg gtttgtcctg agaattatcc gcgccatgaa taattagaac
     5281 gcattgtttg ttatttttta tttgagtttg gataaattga tataagctct tacgagcaga
     5341 ttcaacgttt aaacctttta aatccagttc cgcttcccag ggagtttttc cattttttaa
     5401 atcattgaag ctttttgatg ataaattggg tcgagagtaa gacaatacag tactcgcgag
     5461 cactatttct tcgatctcat cggataaata atattctttc gccatctttt tcaaaattta
     5521 acagtcataa tagaagtata acttaggata taaaaagtat ggcatttttt ctaatataac
     5581 ctgcatgacc ttatgggggc atacaggttt tctatcaaga tactggacct atgctattgc
     5641 ggggtcggag cttcacagaa actctttttg cagtatttca gcaatttgta ccgcgttagt
     5701 tgccgcacct ttgcgaatgt tatccgcgac tatccacaaa ttgagtccac aaggatgaga
     5761 aatatcctgt cttatgcgcc ctacaaaaac atcatcatgc ccgactgcat tcttaattgc
     5821 tgtgggataa cttgctttag aaagattatc cactacagta acgccgggtg cctttgccaa
     5881 aagcgcgcga gcatcgtcag ccgtcaaagg cttttttaac tccagatgaa ccgcttcaga
     5941 atgcccataa ataacaggaa ccctgacggc tgtagggtta accataatgc tgtcatcttc
     6001 cataatcttg cgggtttccc agaccatctt catctcttct cgggtataac cattgtcttc
     6061 gaactgatca atatgaggaa gcgcattaaa agcaatttgc tgaggataaa cttgaacatt
     6121 agctggtctc ccatttaaaa gatcgcctac ctgagcaacc agctcgctga tggctttttt
     6181 gccagtcccg gaaacagact ggtaagtcgc cacattaata cgactaatac caacagcgtc
     6241 atagattggc tttagggcaa cgaccatctg aatggtagag caattagggt tagcaataat
     6301 gcctctttta gtataatcag cgattcgatg aggattcact tcagggacaa caagaggaat
     6361 atcatcctca taacgaaaac aggaggtatt atcaaccacc acgcacccag cagctacagc
     6421 ttttggcgca tattcttttg aaacagcgcc gcctgcagag aataaagcaa gatcgacttt
     6481 gctaaaatca aattctgcta aatccaaaac atccaattcc tgatctctaa aagtcactgt
     6541 cttacctact gagcgagaac tcgctaatgg gtaaagggac ttaattggaa agtttctttc
     6601 ttccaaaacg gttaaaaagg tttctccaac agcgccggtg gcacctacga tagctacatt
     6661 caaatgtctg ctcattatga cctcatctta ccatcaatta acaatgtgct agtcaagtac
     6721 agttcctgct tgcgaagcag aaaacggact acgatatggc tatattttga aacgttataa
     6781 tttattattt acactgtgct ttatgccgta aataatgatc cattaacacc aaagccatca
     6841 ttgcctctgc aattggcaca gcccttatcc ccacgcaggg atcatgacgc cctttggtta
     6901 ctacagtaac ctcttcacct tcagtattaa tggtctgacc tggagttgtg atgcttgaag
     6961 ttggctttaa agcgatgctc acttcgatgg gttgccctgt cgctatgcct cctaaaatac
     7021 caccggcatg attactcaag aatcccttgg cagtcatctg atctctatga tgacttccta
     7081 actgctccac tgcattaaaa ccagctccaa tttcaacacc tttaacagca ttaattgaca
     7141 tcattgcata agcaagagta gcgtccagtt tatcaaatac agggtctccc aatcctgttg
     7201 gcactccccg tgccagtatc tttacccgag caccaacgga atcaccctgg cgtcttaaac
     7261 gatctacata atcagccagc tcctgaattt gcttattatt aggacaaaaa aagggatttt
     7321 tattgatttc attttcattt tcaaactgta acttcaaatc gcccatttgt tgtaaataac
     7381 caataatatc caagtttaaa taacgcttta aatacaatct ggcaatagca ccggcagcga
     7441 ctcgtgcggc tgtctcacga gcggaagaac ggcctccccc tctataatct ctatgcccat
     7501 atttataatg ataggtaaaa tcagcatgtc ctggacggaa caaattttta atgtcttcat
     7561 aatcccggga acgctgatca gtattctgta tcagcaatgc aatgggagct cctgtcgttt
     7621 tcccatcaaa tacaccagaa agaatctgta ccttatcttc ctctcgtctc tgggtagtat
     7681 atttggattg acccggctta cgtttgtcta aaaaaggttg gatatctgct tcagttaaag
     7741 acatgccggg aggacaacca tcgactacac atccgatagc aggaccgtgg ctttcaccaa
     7801 aggttgttac agtaaataac gctccaaagg tattccctga catgccttac tcgcttattt
     7861 aaaatagtct tctaattgct gttttgttaa taaaaacacc ccttgcccgc cgttgctcat
     7921 ttcaagccag gtaaaaggaa ccataggata agtctcgcat aaagcctctt cactattacc
     7981 tacttccact accaaaatcc catgttcact taaataagca tgagcattct ttaaaatttt
     8041 ttcaataata gccaagccat tatttcctgt ttccaatgcc aaaaccggtt catggcggta
     8101 ttcatccggc agggtctgca tctcttcctt ccccacataa ggaggattgc tcacgatcaa
     8161 atcatattgt ttacctgaca gtgccgtaaa acaatccgat tcaatcagtg ccaattgatc
     8221 gcctacatca tgacgttcac aattgatagt agcgacagcc aatgcttgat ttgaaatatc
     8281 cacagcatcc acctgagcct cagggaatgc ataacaacag gcaatcgcta tacaaccact
     8341 cccggtacat aaatccaaaa catgatgcac tcgttctgct tctatccaag gggaaaattg
     8401 attattgatt aactctccta ttggtgatct gggtataagc actcgttcgt caacataaaa
     8461 aggcaaatcg caaaaatagg cttccttaat taaataaggt acgggtactc tttgattaat
     8521 tcgtttatcc aattgattac aaagatgttt gcgttcactg gttgttaaac gtgcattcaa
     8581 caaaaaaggg tcaacatcat atggtaaaga caagcttctc aatatcaggg atctcatgtc
     8641 atcccaagca ttgtcagttc cgtggccata aaataattgc gcgttttctg cacaagacaa
     8701 actaaaccgt aaaaaatcca gaatagtaac cagttcttct gtttccttgc taaaataact
     8761 actcacaagc gtatcaacca taaccataga aaaagtacaa attgtacact aaattaaaat
     8821 ctatgtcctg tattctttgt taaggggtgc gatttaagac gccccttcgc atggctcgat
     8881 tttcacctaa cctaaagaat tacttcaaat taagttataa ttaaatatat tcttttgatg
     8941 cctgttaaaa aatgactgat gatttcctgt ctgatgagga taaagctcta tttcgtcatc
     9001 atatgcgttc tgtaaaacca ttaaacgaaa aaacaaaacg cgtaaaaaac cccacgcaac
     9061 ccactcatga aaaaaaaacc acaactttca agagtcagcc cgtacccaaa gaagaatatt
     9121 ttttatctga ttttattcgt gacactgttc aacccgatac tattttatct ttttcagaac
     9181 caggcattcc caatcagaga ttccgtgcac taaaaaacgg acaaattcca tgggaggcca
     9241 agctggattt acatggatta aaagctgaag cagctcgcca agcgctttat gattttatcc
     9301 agactcagtc actcaataat aaacgctgct tactcattat tcacggcaaa ggaggccatc
     9361 aaggcgctcc cccggtaata aaaaacctaa tcaatcgctg gctgccacaa tttagtcaag
     9421 ttctggcgtt ccacagcgct cttccaaagg atggaggatt gggagctgtg tacgtcttat
     9481 taaaaagaaa cagagaaaag gatgaacagg gcaattacta gtaacacttt acttgcgtta
     9541 aagcagtaat cttaggataa ttcgtcaaat taaaaaatat cttgagtaca gctatggaaa
     9601 aattaggtca gttcatcatc aatcattggc aactctggct cgcctttgtt gtggttgtat
     9661 ttttaatttt cattaatgaa atactctctc aaagaaagaa agccaaagaa gtttcaccgc
     9721 aatccctggt tgatttaatg aacaatggaa atgccatcgt aatcgacata cgcgacaaag
     9781 aatcattcaa aaatggccat atcattaatt caatgaacgt aaatcctgat gattttgaac
     9841 aacaaaaaat gagcaagtac aaagataaac ccattatcct ggtctgcgca cgaggcttac
     9901 aatctccaac cctagccatg aaaatccgca atcaaggtta ccaacccctg gttttgagtg
     9961 gaggaattca agcctggcaa aatgctgatc ttcctttagt gaagggtaaa taaacagatg
    10021 aatgaagtca tactctacac tacaggctat tgtccttatt gcatcaaagc aaaagaacta
    10081 ctagatagaa aaaaggttat ctataccgaa atccgcgtcg atttacagcc tgaattacgt
    10141 gaagaaatga tacaaaaaag tggccggcgt acagtgcctc aaattttcat taatggccag
    10201 gcaattggtg gctgcgatga tttatatgcc ctggaagccc agggaacatt aaatgaactt
    10261 ttaaaaaaat aggaataaaa catgactgaa caactgaata ccaatcagca aaatgatgaa
    10321 gctcaattca tgattcaacg aatctatatc aaagatttat cctatgaaac accaaataca
    10381 ccggctgttt ttcaacaaca atgggaacca gaactcaaac tggatctcaa tacaacgact
    10441 actcaactgg ataaaaacgt ttatgaggtg gttttaactg ttacagccac tgtgatgaat
    10501 caaaaaacca cagcattttt ggttgaagta aagcaagcgg gcatctttac tatccaaggc
    10561 gccgcagcaa gtcagttgga ccacttgctt catagctttt gccccagcat cctgttcccc
    10621 tatgctcgtg aagcaattac ctcgcaagtc attcgtggca gcttccccca attagtactc
    10681 gcaccgatta attttgatgc tttatatatg cagcagctgg aagaaaaaca aaaagcaact
    10741 ggagctaaag acgagactgt ttctcactaa gatgaataaa aaaaccattg ccatgttagg
    10801 tgccggctcc tggggcactg ctgtcgcaat tcatttagct aaaatagggc ataaaacgct
    10861 gctgtggagt cataatccac agcatgttgc cctcatggct gaacagcatt caaatccagc
    10921 ttaccttcct ggtatacctt ttccagagaa tttgattcct tctgataatt taattgaatg
    10981 cgttcaatca gcggattatg tcatcatagc agttccttct catgcctttg cggaaataat
    11041 caataaaatc cctaaaccaa cccaaggatt ggcgtggctt acgaagggtg ttgatccagc
    11101 gagtcatgaa ttattaagcc aactggttgc cagtcgattt ggggttgatt ttcccatagc
    11161 agttatttca ggcccatcgt ttgccaaaga agtggctcgc ttcctgccta cagctctcac
    11221 tttggctagt aacaatacga actatcaaaa aaaaatgcat caactatttc atcacgacaa
    11281 cattcgtgtc tatttaagtg atgatttaat aggtgtgcaa ttatgtggcg ctgttaaaaa
    11341 tatcctggcg atagcctgtg gaatcagtga tggcttaggg tatggcgcta atgccaaggc
    11401 agcgcttatt acccgtggac ttgctgaaat gactcgtttg ggattaagca tgggagcacg
    11461 gcaagatact tttctaggct tggctggtgt aggggacttg gtattgactt gtacagatga
    11521 tcaatcgcgc aatcgccgct ttggattgct cttgggtcgt gaagtgccta ttcctgaagc
    11581 cgaacaccaa attggccaag tagttgaagg gaaacacaat gccgctcaaa tttgcgctat
    11641 agccaacaaa aataaggtgg aaatgccaat ttgtgagcaa attaatgcgc tattgcatgg
    11701 tattgttcat gcccaagagg ccgtgaacaa cttaatgagt cgtcccgcca aggaagaata
    11761 acctttgccc ttgcaaagaa tcatattaaa ttaggtttag tgcaccagga caccaggacg
    11821 caggtgatac tggtggattg tcgacattaa cccatagcat caatcaattc aatatcactc
    11881 aaactcaatt gctcacctaa aaatatctcg cctaccttct ggaacctatt gatagaatct
    11941 gttaccaaat agttgattct ggggggagct tccaaattgt cattgtgcag attttgattt
    12001 tgcaataatt cataaagaga aattgcagtc gcctgagcag aatcgacaat tgcgacatct
    12061 tttggcaata agctggatag caagggttta aatactggaa aatgagtgca ccccaataac
    12121 acagcatctt catccgaaaa atcgtcgaga taatgcttca atgcctcacg agcaactgca
    12181 ttagtcacca taccttcctc tgccaaggcg actaaaacac tacatgcccg actactgaca
    12241 actgcctcag gcaaattctt tatgatcaaa tcatgatagg ctctggaagc aatggttgtt
    12301 tctgtagcca gaacagcaat acgatgattt ttggtagctg acacagcagc ggctgcacca
    12361 ggtgccacca cacccagaac cggaatatcg gttaacatgc tctgtaaatg aggtaaggca
    12421 gccgtcgttg cagtattaca ggcaatgact aaagctttta tgcggcgctc aaccaaaatt
    12481 tttgccattt gcatagcata ttgtttgact gtgtcagggc tttttgtgcc ataaggtaaa
    12541 cgggcggtat ctcccaaata aacaaaagat tcatgaggta atttatcccg cagagccctt
    12601 aaaaccgtaa gtccccccat gcctgaatcg aatacaccaa tagccaaatc cttgttagag
    12661 ttcaattgat tactccttct tgtcatttgt ttcctggctc tcttatttgg caaaatagct
    12721 tcgttctacc aaaaatgaga gccaaagtca ttattattta cttacgcatc cctgtactcg
    12781 gactttcagg agcaggtcct tcttgttcaa tggttctttc agttgtttta tgcaccggat
    12841 tcagttcctt cttcatcttg ctttgtttat cagtaatctc ttgtactttg gaatccactt
    12901 tttctctttc tttctgagga ctaaatttct catcagtcat ttgttgcata tgttttattt
    12961 tagactgtat gatattctgg gtctctgtta atcctgtgtt agtaaatacc tgactatata
    13021 atgaattgct gctaaatccc cacaaccgtc ctttcacatt atccggatgg aatactgcag
    13081 aattcacctc aatcgcatca cggttaaact tgaattttgg attcttttca ccaaggatca
    13141 ccagggctgt gtacaaatat tccagttctt cgggattaga tccgcgtaat cgtatcggtt
    13201 tatccttggt tggcggacta tccagactcg ctaaaatatc agccgccatc gccatggaaa
    13261 aattgacttt agcttctacc agaggatctc cacttggagg gtttggaggt ggaacttggg
    13321 tcgggaattg taaaatctca aatttacttc cgggaacctt gcttatttct ccttttttgc
    13381 tcgttacttg atcaggaaca ttgttatcct gagtataccg tcctatcgtt tccacaggag
    13441 caccggattt cggtgctgtt ttatgagata catcaacgac aacaatctgc ccttccggta
    13501 ttttttcacc aacaagaaat tcttgtatcc ttccgttaga cccagtagta gcggttgtac
    13561 tcgatctcag agaaggatta ggaacattgg gtaatggcgg tatctgatca cgtgaaacag
    13621 gaggatggcg tttgataccc tcagaattgt agtagtaatg catcttccct ttggctgcca
    13681 catccacttc ttttacaata gtctctaact ttccttgtat ttttttataa aaatccaaat
    13741 cctcgcgcac cgcactcaat tcggcttcca aatcagtacg caactttttg atttccgctt
    13801 tttgctccag ggtcaagcca gcggccttaa attcaccttc tttgggcaga ctcttcaaat
    13861 gaccttcgag agcgactacc tgacgcctta attgatcaac aaccagtcca caatccctgg
    13921 acaaaccttc gtatctttct ttcatttgag ctgctttcga tctggcggta ccctgaaagg
    13981 ttggattgta taaatgaacc ggatcgatat cattgataaa ctttaactta tctgcgtttg
    14041 ttcttattgg tcctgtgatt cctttaatag actctaattc agtactcaga gctttgattg
    14101 ctgtcatcac atgagctgga ttggtatcta atagttcctg ttttctgaga tcatttttta
    14161 tctcgttaaa tacagttggt gtaagttccc gcaacaaatc gtctttaaat tttttatttg
    14221 ccggattagt tggattttct ccaaataatg tatcagcata atcttgagga gtttcgctat
    14281 ccttcagagg acgtaaaaac cgattgacta tatctttgga aaaggtgaca ggtttctcta
    14341 tactcaacag gacagctaat aattttttat tacctgaatt agaagtactg ttgtattcag
    14401 catatatatg ttggttatgt tgttgctgct tactcatctc atcttttcga ggagttgagc
    14461 tggtaaaagc tctgccatca tcgtttaaat taaatgcatt ataaaaatct ttttgattta
    14521 ccgagccaga ttgagtttta atcgcatcaa tcaagatttt atagtcggtg gcctgggtat
    14581 aggtattggg gttagaattg gcggtggtta atgcctgatt aatagcagca acttgcttat
    14641 catttaaagt gatttcgggt ttaaaattag ccaaaaccct ggctacctcg gcattgtgaa
    14701 tagccctaaa tccctcgagt cttttattct ctgtcaagag ctctgcaatg ccggatgcgt
    14761 ttttcccaag gtaatgttct gctacatgag attcataagc gttcattaaa tggcgtaatt
    14821 gttgtggctt ggccaaaatc tctctttgtt tttcgactgg aagcttagtt aatgtgctca
    14881 ttaatttcga atgggccccg ctgcctaaag aagacactct atttatttca agttcaaact
    14941 ggcgagctct tgcccattgc ttcatatctt tcaaatcggt gtctttcacc caatccgctg
    15001 gagtaatacc taacttcccg agtacctctt taaatttatc caaattttta gccccgtcta
    15061 atgcttttaa agcatccaag gcctttaaat ttgtttcatc cttgatatta ttaataaagc
    15121 tcttcatcat attttttttg agcgagccta aattttcttc tgtcaccgct ttatcaatgt
    15181 agtcatgggg tcccaagagg gcaggttttt ttaattcagt aatcaatgca ttggcatctt
    15241 tagcattgag agcatccttg agattttggg tgcctgatga taaaaccgct tgaagataac
    15301 gagctcccaa tactccttgg gctctctccc attccgactc cggtaagtac gttttataag
    15361 gttcatccaa actgttttta aaccctgcag ctgtcgtact ttctaacccg ttttttttgg
    15421 ctaatagcgc attgtgagat aatgattgga cataactatc aaatcctctc ttggcagctt
    15481 cctgttctag tttttcaacc ctttcttcca gagcatcaac tacttctcta ctcaaaaaca
    15541 ataccccgtt tccttcagta ggaaaaccca aggcattcgc agcacgttca gcctcgggtt
    15601 tactcatggc atcacgcaaa tcctttaata attgagtatt tccagaactg ttaatcaatt
    15661 taagcaataa caagtcacga gcttgttctt taattctttt gatcgcttca tcagataaaa
    15721 caccagtaga tttgttaata gctttcggag gaattgtcgg ggtatattct tcttttaacc
    15781 aaccatgcac atttccttca ctaaaattac ccaaaccagg ctttttggat tcgatataag
    15841 ccctacactc ttcaggattg ttttttaaaa tagcaactaa agtgtctgta tctgattttt
    15901 ctaacccgag tttgactcgt tgttctgcag caaattgatg taatttttga aaattatagg
    15961 ttggatctgt agaatttaaa aaatcatctg atttcaaata ttgttttcta ctcttaccaa
    16021 aaaaacgccc ttcattaaac tccatcaagc taggatcatg ctcatcccag aactcctgat
    16081 gctcagctac tatctttcta aaagcttcag gatcagaggg atcagttttc aatatatcat
    16141 ctaaaacttt tgcaagctca ttacgaagag tttcatcatt ttttgctgat tccgcaattt
    16201 cttccagcgc atcaaaaaat tctttatttt tggccatacg gatgtactcc tcgagaatca
    16261 ttatgtgttc attttaagcc aaaaaactta agttatcctt aaattttgcc gatattaata
    16321 ccacagatga aaacctaagc tagctttata attagaagta tagcaaggat aaggtgaata
    16381 gaatgagaat aaaaataatt ctttgtgggt taattctaac aaacctcacc tatgcccaag
    16441 gctgtattgt tggcggtcag gcctctcaac ccaggtatgt ctgttttgat gggcgaacgt
    16501 tggatctaac tgaaacaggc cttgtatgga atgccaaacg gggatgtttt atcagctcag
    16561 taccttgctg taactacaat gccactcatt atgcctatca cccaaatccg gccaaaatag
    16621 gcggagccta tgcccgttgc aggcacgact atccctttac tcttggccaa atgcaaactc
    16681 attaatgttt aaaccaacaa aaatcgaaaa ttcttttgaa tttcatttaa atcaaactgg
    16741 ttcaaataca gagagaaact catccacgca cttaatgcag ccaaatcctg gaaaggaggt
    16801 ggaagataca ctggatccgt taaaatctcg cgttctttta attcacctag caaaggtaaa
    16861 tcatccaaaa ccagcttgcc ggtaaataat agtgggattg tgtcgactct tttctgccct
    16921 atagcaaagc gtatgtaatt gtaaattaat acaaatccct tggcatagga taaatccttg
    16981 gtaaatgggc cacctgtcgg tgtgctgcct ctaaatatac gtacggactg gttatagctg
    17041 tcttcttctg acaatccgca ctccaggaaa tagcgataaa tatcaataaa atctgcccct
    17101 tgagtcacct tatccaaggc aatcacccgg tttgtaattt tcaacatccg acctggataa
    17161 gaagaaaatg tcacgacttc agtaataact gccaagccct cctgaatcac gctgctggaa
    17221 ggagaacctt ttgacaggaa aaagcaattc ggttgcaagg ctccattgag agtcgttccc
    17281 acatgaaccc agccctcatg aacttccaaa tagcgtaaat ctctatcgct aaacatagcg
    17341 ttctgactta atttgatgct gtcagctcca gcagaagcgt cagcaatcat atcatcgctg
    17401 accataacac tcactcggcc aggatgcttg tcaaaaaact ttcctaatcg ctcctgtaaa
    17461 atttcctgag cctgtatcgg agtgtagcgc ttgatatcag cttgagattg caattggacc
    17521 tggagactct ttaatacatc aaatagcagg gaacccattt cacacatacg cggtccaccc
    17581 acataaaaca catcgtccgg gctaccatat aattccatag ccatttcgct aaatgaaggg
    17641 gtaccccgca aagataacat ctgggctgcg cggctatact cttcgcattg acgtctgatt
    17701 aggcgagtta ctgtggagta ttgccctaat tgattctgtg cgtcacgcaa aataatacga
    17761 aactcttcct gcttgtcttt gactttaaaa ggcagtggct taccgtcata ataagcctta
    17821 tcaatagaag gaagtttttt tcccttgaac ttaaaaaatt cctgctttac tgattcatcc
    17881 catttgatgc tatcaagaat cctgatttga cgctgcgcct ccacgatacg ctgagacaac
    17941 tcctgtatta ttgacaactc tcctgattct gatggcgaca tgatgaatcc ttatgaagtt
    18001 gtgatatctt ccaccggagg cgctatactc acccgcgcat cctgagtttg ttgaggtaaa
    18061 tcataaaaat tactaatatt agcactagtc aatggaggtg gtactaccaa agcttcgcca
    18121 ttacggctct gtaaatataa attttctcca ttactggcat aacgagaatt acatgctgtt
    18181 agtaccagtg ctgccaagac tataaaactc aattttttca caacaaaacc ctcagttata
    18241 tcaactctaa attcttcaac accttttcca aagcctgatg atgtttttca gacaactccg
    18301 tcatcggtaa tcttaattcc cctccaatta atcccatttt gttcatagcc cattttaccg
    18361 ggattggatt cgactccacg aacaaaagtt catgtaaagg cattaattgc tcttgaatac
    18421 gcaaacatcc tgcttgatca tcatccattg ccaaatcaca catttttgcc atcaatttag
    18481 cagccacatt agccgtgact gaaataacac ctttagcccc ggccaacaac cattgggcag
    18541 ctgtcaaatc atcgccactg taaacatcaa tgctcccttc gcataaccgt aaaatctgct
    18601 gtaaacgagt catctgtccg gttgcttcct ttattcctat tatattcgaa attttagcca
    18661 gtcttgctac cgtttcaggt aacatatcac aggctgttct tccgggaaca ttatataaaa
    18721 taatcggaat cgctacggat tgggcaatat gactgtagtg caaatacaat ccttcttgag
    18781 taggcttgat ataggctggt gtcatgatta aagcagcatg cgccccatat tccatagctt
    18841 gctgggttag ttcaatacaa tccttggtcg cattcatagc agtacctgca atcacaggca
    18901 ctctttcttt tgcttgttca atgactgttt tgatgaccaa aagtttttcg ctatgtgata
    18961 aagtaccagc ctcaccagtc gtgccagctg cgaccaaggc atgagttccc ttagctatat
    19021 gaaattcaac cagttctcgc aaatgatgaa catcgacgct atcatttcgc atgggggtta
    19081 ccaaggctac tatacttcca ctgaacatgt tgccctcaaa aattaatgat ccatgatcgt
    19141 atattactgg aaaacagaca cccgagtaaa tttttatata acactttagt caactggaat
    19201 ctctatcagc aattattatc ttcaatccca aatacatatt tgtttaaatt ttttacatat
    19261 ttagcttatt ttgtactatt cttgatatga agacaacaac ttacaaaagg aagtttacta
    19321 tgaaaaagat tataccaacg ttgtttttca tagggatatc aaccactacg atggtaggtt
    19381 gcacaaatac tcaagttgga acagcagttg gagcagctgc aggcgctggt attggctatg
    19441 gagtttcagg aggatcagca ctgggaactg caattggagc aggggctggt gcattggtag
    19501 gcggtgccat cggtcaagag caagacagac gtgagtatta ttactacagt ggctacccct
    19561 attattatta attctgacta gtcgactaaa tatattcctt aatcatttta gcgatcataa
    19621 gaacctggtc ttttcaagat agagaaaggg ccaggataat tcttgatttg ggtaaaacca
    19681 aaactcttgg tgaaatgata cagaaaagaa gcaattacct cccttaaaga caactctcta
    19741 aaaaacttaa acaattcatc aaagattttt gttagcaaat aataaggcat tattaaaaat
    19801 ccattgctat aatcaattca tggaaaacaa tgacaaggat agtaaaagat gaaactgaag
    19861 aataaagtcg ctattgttac aggagcagca agcggaattg gtaaagaaat tgcgcttgtt
    19921 tatgctaaag aaggggcaaa ggtagcaatc gctgatctga atcttgatca ggcaagccat
    19981 gtagcagagg aaatcaaatc atcaggcgga caagcaatgg ccgttgccat gaatgtaact
    20041 gatgaagcac aagtcaatca gggcgtggat aaagtagccg atcactttgg aggggttgat
    20101 gttttagtca gcaatgccgg tattcaaatc atcgaatcag tggataaatt agccttttca
    20161 gactggaaaa gaatgcttgc cattcatttg gatggtgcct ttttaactac taaagcttgc
    20221 ttgaaataca tgtatgcctc aggcaatggc ggcagtatta tttatatggg ctcggtccat
    20281 tccaaagaag cttctgtact caaagcacct tatgttactg ccaaacatgg tctattgggt
    20341 ttatgcaaag tagttgccaa ggaaggtgga actcataagg taagagccaa tgtcatttgc
    20401 ccggggtttg tccgtactcc tctcgttgac aaacaaattc cagagcaagc aaaagaatta
    20461 ggcatcagtg aagaagatgt catcaagaaa gtgatgctaa aagaaacagt tgacggggaa
    20521 ttcaccacca cagacgatgt agcacaaacc gctttatttt ttgcatcatt tgaatcgaat
    20581 gcgcttacag gacaatcatt ggtagtcagt catggttggt tcatggagta aacaaccatg
    20641 actcgaacta aaaaatctgc aagacagatt gagtatcgcc atattgcatg cagctttcag
    20701 ggaggagggg ctttgggtgc ctatcaagct ggagtattgc atgctttaaa tgaagtggga
    20761 taccaccctc attggtacgt gggaacctca attggagcaa ttaatgcggc gattgctgca
    20821 ggtaactctg acaaagagcg gatagaaaaa atgtatcaat tttgggagtc tatagctact
    20881 ccgtccgcag tcaatgaatc aactctcctc gatgataaga taagtcggaa aattcaacat
    20941 ttaattgctg ctcattccgc tttactcttg ggacagccag gtttttttgt acctcgtttc
    21001 ccttcccctg attttggttg gcataacagc cctgatttat taagttacta tgatacttct
    21061 cctttgcata aaagtttgga aaaatttatt gattttgatc gtctgaataa caataaatta
    21121 acccgaatca gtgtaggagc agttgaagta agtagtggaa tgatgactta ttttgattcc
    21181 tataaacaaa aaataggacc tgaacacatt atggcaagcg gtgcgcttcc tcccggcttc
    21241 ccggcagtta aagttgatgg taaatattac tgggatggtg gcatatcaag taattcacca
    21301 gtcaattata tcctgaatca taataatcaa aagcaaatgc tttgttttat gattcatttg
    21361 tttgattctt ttgggatggt tcccacctca atggatgagg tattaaaacg taaaaaagac
    21421 attgaatttt ccagtcggtt tataaaatta attaaccttc acaaggaaat tcatgattta
    21481 agaaacacaa ttcacatttt atcaaaccat atttctcctg aggaaaaatc aaaacctgaa
    21541 ataagggaat gtattaaaaa gggacgtcct tccgctattt cgctggttcg atttttatat
    21601 gagcacgatg aaacggaatt gtcttcaaaa gattatgaat tctccaaaaa atctattcat
    21661 gaacgcattc aaaaaggtta tgatgatggt aaaaatgcga tcaaaaaatc gccttggaat
    21721 caatcagtcc caatgactga aggtatagca ctgtatgaca tgtctgccaa agacactatg
    21781 aaaaaatatc aagactaatt ggacactaga tactatagga tagggatatg ttaattatag
    21841 taggttatat tgtaatacta ctctgtgtat ttggtggatt cagcctgaca ggcggccatc
    21901 tcgccgcaat atttcagcct gttgaattat tgataatcgg aggggccgcc atgggttcct
    21961 ttatcgttgg taataatatt accgttttaa aatctgttct aaaatctctg cctgctacat
    22021 ttcgcggcca aaaatcggca aagcaagcct ccaatgattt gttaagcctt ctataccatt
    22081 tactcagtaa agcaaggcaa caagggttaa tgtcgctcga aaatgacatt gacgagccgg
    22141 ataaaagccc aatttttacc ggttatccca atttaatgag taatcatcat ttaatagagt
    22201 ttatttgtga ttacctgaga ttgattatca cttccaacat gcagcctttt caattggaaa
    22261 gcttgatgga tatggagatc gaatctcacc atgaagaaga aatgatccca gccaatgcca
    22321 tcaccaaact ggctgatgcc atgcctgctt ttggtatcgt tgcagcagta ttaggtgttg
    22381 tccataccat ggaatccatc agcttacctc cctctgaatt aggtgtttta atcgctcacg
    22441 cgttagtggg aaccttttta ggtattttaa ttggctatgg ttttgttggg cctatcgcta
    22501 ctgctatgga acaaaatgcc aatcaaaatc aattgatgct gcaatgtata aaagttacca
    22561 tactggcaag tttgcacaat aaccctccta ttattgctac tgaatttggc cgtaaagtat
    22621 tatttacatc gcaaagacct tcatttaatc aattaaatga tgaaataaaa aatgccaaaa
    22681 ccgctcagac aacaactcaa aactctgaag caacagaagc tacatccagt taggttacag
    22741 ccatgagcga aataaacgac atcagcgatc cgatcaacga cgatctggaa aaaaaggaca
    22801 agcgggaaaa aaaagaaaaa accactcact atacccctat catcagaaaa attaaaaaaa
    22861 atgatcataa gcatcatgga ggctcttgga aaattgcctt tgctgacttt gtaacggcca
    22921 tgatggcctt ctttctactc atgtggttag ttgcttcatt aaacaaagct caaaaagcgg
    22981 gtattgccga gtattttaaa cagccaatga aagtggcatt gtttggcggg gaaagcatgg
    23041 ggaatagaaa agcaacgatt aaaggaggag gccctaatat tgaagacaca gatggccagg
    23101 tttctgccac caataaacct ttaatcaacg aaagcatagc aaaagataaa gaaattgttg
    23161 aatctcaagc taatgaaata aaaaaacttg aagagctgaa atcagagatc aatttaagta
    23221 tggaaaaaga tccatcgctt gctggcctaa aaaaacaact cctgatggat gttgtgtctg
    23281 atggcttgcg cattcaactg atagacaatc agaaaaaacc catgtttgat gtaggctctg
    23341 ataaaatcaa tccggaaatt gaacccatac tcgctaacat cgcaaaacta ctcaattcag
    23401 tgcctaataa aatcactatt caaggccaca ccgatgccaa tccttatcat aatcctgaag
    23461 aattggaata caccaattgg gaattatctg cacaaagagc gaatgcagca agacgcgcat
    23521 tgataaaagc tggaatggac gaaaataaag ttatgacagt cacaggttat tcttccacta
    23581 ttcttctcga taaaaaaaat ccctacaatc ctgaaaatcg gcgcattagc atcattgtca
    23641 tgaaaaaagg ggcagaaaac aaaatcaagg tcaataaata atttggcatt cgaccaaggc
    23701 tagccccgtt tttgagagct tttcattaaa attaatacta tttactttac aaattaacat
    23761 tcacaacatc agaactcata atgcattcgc catcttgatt aatcataaga taaatcctgc
    23821 tatcgccatt tttatacaaa tgaaaaataa ttcgataaat ggttacctct cccccttcaa
    23881 tctgaaccgc tttgggcttc atatccgaca taaatgcata ataattactt aaaccgagcg
    23941 gatgtagtgt ttcgctccac ttggtcgatt gcaactgtct taagtgagct agtcccatat
    24001 ttcgctcaaa gttatagtca taatcaacaa cgacctttgc attatgcagc aaagccgggc
    24061 atgaattact acgctctgta ttggcaaggg taaagagaat gctggcatgg gatggaagtg
    24121 agtgagaaga ataggctgaa ttcaataaac tccaagcgat cataaacaaa atgattcgtt
    24181 tcataactac tccattaatt aaacctggtt cgagaaacat tcttattaca atacgaattc
    24241 atttgcaaca atttaaaaga ataagatcgg aatgagcttc atgaattgtt aagaaggcaa
    24301 ggccattttc ctcgctcctt accttaaatt aatctcttgc tttgttcatt tcagttggat
    24361 atgatttagt tcgcaattgt tgaaatattg tctttgtagt gttaatattg atcaacctgc
    24421 gaggcgctat tttattagtt agtattaaaa cgaggatgtt tttcatgtca tcaaatgaat
    24481 ctgcagctat agtatctccg atagtcaacc aaaaactatc acaatggaaa aaacaagata
    24541 cgatttggat gttaagcctc tatggcacag caattggtgc cggaactctt ttccttccta
    24601 tagatgctgg tcttaatggc attttgcctt taatcattat gacaattctg gccttcccca
    24661 tgacttatta ttctcatagg gctttatgtc gttttgtcct ttcaggctcg tcctcacaca
    24721 atgacatcac cgatgttgta gaagaacact ttggctcatt tgcgggtaag atgctaacta
    24781 tcctgtactt ttttgcgatt tatccaattt tgcttatgta cagtgtcgca ataactaata
    24841 ccacggaaag tttcctgatt aatcaaatgg gaattacccc tccgccacgg gctcttttag
    24901 caatcatatt aattcttggg ttaatgggta tcgtgcgttt aggacaagaa attattgtca
    24961 aatcgatgtc ggtattggta tatccttttg ccactattct atttctgctt tcgctttatt
    25021 taattccaaa ttggaataac gctattttta tccaaagcaa ttccttacat gccaatggag
    25081 ggcatggact attaatgact ttatggttaa ttattccagt gatggtgttc tcctttaacc
    25141 attctcctat catttcatct tttgctgtga atcaaaagca gcaatatggt agccaagctg
    25201 acgagaaaag ctcattaatt atgaaataca gtcacttgat gatggttttc tctgtgatgt
    25261 tttttgtatt tagctgtgtg ttgagcctgt cacctcaaga tcttttgcaa gcaaagcaac
    25321 aaaatatttc cattttgtct tatctggcga atcattttaa tacccctatt atggcctata
    25381 ttgcaccggt tattgcattc atagccattt caaaatcttt tctgggacat tatttaggtg
    25441 ccaaggaagg tttaagtgga attattgtta aatcattaaa atcaacaaca ggcaaaacaa
    25501 ttaataagaa ttccctgcac agaatcattg aaatctttat gattctgact tgttgggttg
    25561 ttgctacaat taatcctaat attttaaaaa tgattgaaac attaggaggt cccatcatag
    25621 ctgtcttatt atttatcatg ccaatgtatg ccattgctaa agtgccagcc atgaaaaaat
    25681 acaacaatca aatcagtaac gtatttgtta ccgtcatggg cattatttct atctcagcca
    25741 tcatttatgg cttaatttaa caattaatct gctaattgca tatatttatt aaggcgtata
    25801 ttacgcctta ataatattgc taaacattgg tatttttctc aatagaatga acttagattt
    25861 tattctttga tagtgatata tccaaaaaga cattatccaa agtactgctg tctctggaat
    25921 caaataatga aagtctcttt aaatctttag tatccaaacg cgccagctct ttatcaatca
    25981 tataatcaat ttcgccttgc gttgtagacc agccataaag tcctctgatt tgacgtacaa
    26041 tccatagccg acttcttaat tgacgtatat acattaaagc cgcattttct gattttgttc
    26101 ccttaccatc cacttccttt tttaatttta acagtattcc tcttaaactg agattatctt
    26161 gattagcctt tataaattca gaaatgcatt caactgccaa catctttttg aatttcaaac
    26221 aatactgatg atcttcacca atgtccctga gtacttcttt cagttcatga taagttttag
    26281 cctttatggc tttgtttaga taaggagtat gaaattgata ggatctgatg ttttcaattt
    26341 tatcgaactc ttcaaactgt tttgtctgat tagctccatt cgccaataaa tgtttcatga
    26401 taaaacgata atctttacgc acatccgcag gatgaacttt agactgccct gccatctgta
    26461 aagcgatatc caaaggagtt tttcctgagc tgtttttcgt gttgatgaat tgcccataca
    26521 tgccaatcgt ttcatcataa cgataatcac ctgacttaat tgctatatgc agcggggtat
    26581 ccccatcctc aaaaagaccg gaacaacaga ggttatggct ataatctaac gattgtctaa
    26641 tttcattttc aaaagatttt ctctcttcct ctggcaagtt attcaggatt tcatgacata
    26701 ataaatctcg ctcttttcca ttttgggaaa gaataaaatc acgaaaatct tttagagaaa
    26761 ataacatcgc ctttaaacgc gcctgtctgg ctaacatcgc ttgaattacc agagaaatat
    26821 gtgccctgtc tgaagagtta ttctcatcaa agcaggcctt taaggtagct tccatttgag
    26881 attgagagat taaaatatgc ttgtaaaaag accgccattt tgccttgtta aactcttcca
    26941 catgggataa atccgcaaaa gcctgaattt cagcataggt acgataatct ttattatccc
    27001 atggtttata aaaaatgctg gttttggttg gccaataacc attagcagaa tattttaaat
    27061 taggaaattt taacaagtct tcttctgtga tatcaaaagc atcacatcca tcaaacaaat
    27121 ggcagaatct tcttgttgta aatgacatga tgctgtctac aaacattaaa tcatgatcaa
    27181 ttttgaaaaa aacaactcgt ggttttccct gtttcttcac caaataaaaa ccaaaattcc
    27241 ctttatgcaa atcgtcttct tccaaagtgt acgaagtagc caatatactt gccaaagagg
    27301 cataatctat gctcaattta ttattttttt ctgccgccag taattgatta aaaaaacctt
    27361 gaggcaactt atccaggaaa tagaaaggta tctcattcga gctggtcact cgcttttcag
    27421 tataatcaca tccattcctt ggtgcattca aagtataaaa tggctgcttc aatccttctt
    27481 tattttcaat cacataattt aaatgctcaa ctatcaatcc ctgtacttta tttgcatcat
    27541 tcactaccat tttttgaaag gaagttaatc cattatctaa aaataatcgg gctaactgac
    27601 taaaagccac ttccatgcga gataagttag cgttaccaaa cttgtttttc ttataaataa
    27661 ccctgaaatt tttttcggac gaatcagaag gataataaac cgcatcaaga taaacttcat
    27721 gccctgaaaa agaaggggca cccagataaa tatctttaag attataaact ctaggcatgg
//
LOCUS       DACVWI010000021        27283 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.021, whole genome shotgun sequence.
ACCESSION   DACVWI010000021 DACVWI010000000
VERSION     DACVWI010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 27283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27283
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.021"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(50..892)
                     /locus_tag="JBH85_03340"
     CDS             complement(50..892)
                     /locus_tag="JBH85_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAU0945225.1"
                     /translation="MHHLILGYGYCGYYLAQELLGHHQQVTVVSRQLKKELELSKLQH
                     ISHDLEYPFHWSEPDSIIYYLIPPPSQGTCDTFLQQFLNQSSLNAKKIIYFGSSGVYG
                     NHQGAWVDELSACIIDSPRQQRRLDAEQQWLAYCQQHNKELSLLRIAGIYGPNRIPAD
                     AAKSKIPIIKPTEAPFTNHIFVKDLALIAYLLGQKQTTSAVYNVADGNPTHMGELQQT
                     VANALGIESASYESFEQAWEKASPMKREFMRASKRLKIDLLKTALGEDIQFTSLYDAV
                     KQSL"
     gene            complement(920..3496)
                     /locus_tag="JBH85_03345"
     CDS             complement(920..3496)
                     /locus_tag="JBH85_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HAU0945226.1"
                     /translation="MHWQKVNQKDMPIKFTDELKSDELYNLLSQGAVVITPNNRLSGT
                     ILQNYFTYWSRKTITKPICLPFNTFLVNSFEQLKFQKPDLEHPILLNSAQCQHLWRKL
                     IESHPSIIYTEGLLKTIMQAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKILKE
                     ISAIHQHQLIPYLLDSNYQGLLKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLKE
                     NQETPEVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFE
                     PNLFNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRSD
                     YLQESKLLQDQSFPTKLFIEDIAHHTPKLAELLKNMNFYPEKTTLDEWIELFQERLNG
                     IGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLISSHLTKKEAFEALKQLIDNTIFQPQ
                     KSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSPFIPFELQRELGMPHSIPA
                     RELQYAKQILQRLQRGSVETVFSYPQFDDDTPNLPCSLITHYPAYLSRPADNKTNVQS
                     CLVPLEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKE
                     KGQLIHKILELLWQRLENQEHLIKLKPAELERFIDQAIQGALNPIRQQHSQTFPDLVA
                     NVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLAGLDFKVRVDRLDEVGNKQWV
                     IDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSGFSEEKWET
                     KEINTLKEDENWEDYRQRWLEQLTHLAEEIKSGYCPPRPQNLTICQRCDFQNLCRFQA
                     KQ"
     gene            complement(3444..4055)
                     /locus_tag="JBH85_03350"
     CDS             complement(3444..4055)
                     /locus_tag="JBH85_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945227.1"
                     /translation="MKLCTKIYHIELIIRCIMNTPDPALSISNPRLLSAIYFGLLSVV
                     GTILINAFLTSIGIEEIIPVYQSVILGMVVASCTGAIFGEAIVRCKKPYKRKTFWLGF
                     SMVIASLPVFDLGLVFLMSEDHAKLFEVTTLTSMVLFYLIVLAYSYVLFGILLAIASG
                     LAAMYLRGQLVYDILHTQTRRQQKHKHALAKSKSEGHAHKVHR"
     gene            4353..5591
                     /locus_tag="JBH85_03355"
     CDS             4353..5591
                     /locus_tag="JBH85_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HAU0945228.1"
                     /translation="MNSILFKNANVILGESTELKKKFDVLVQNNLISQVSQTPLQPFE
                     GMRIIDVKGKTLMPGLIDAHAHITGLTLSPKNIFYSEAEIFLAAATYLKNSLFYGFTT
                     LREAGGADFRIAQLLDNKSIPGPRLFYSGRALTQTGGGADFRKPNEQIDPCGHVGSFS
                     TMSVIADGIDEVRKAAREELRKGATQLKVFASGGVVFPSLSNPTLYEYSEEELSTIVE
                     EARARNTYVMAHAYSDESVRKCIKSGVRSIEHANFVSEPTVELMSESGVFYDPTFISL
                     VQRIESAEQNRLSEAIVANLKNTIEKGKKVYEYALKYKIPIAFGTDLWGPEAQRDQLR
                     EFEMLKELDSAANIIRSATVVNAELLMQKGKLGVISEGAYADLLVVDGNPLVNLNVLL
                     RPDENLKLIMKDGVIYKNEL"
     gene            complement(5624..6175)
                     /locus_tag="JBH85_03360"
     CDS             complement(5624..6175)
                     /locus_tag="JBH85_03360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HAU0945229.1"
                     /translation="MLYHDPLISEHTMKWVRTFIINYTICPFAKGPVNKGTLRIITSD
                     TPKKHQALKDLITEIQFLEANPAVETTLLIFARAFKDFFSYLDFISLAEQLIQNLNYE
                     GIYQLATFHPDYYFADTSPDDVANYTNRSPYPMIHLLREDSLDKAIAAYGDTHTIPEK
                     NIATMNELGLEKMKQLLASISIP"
     gene            6293..6856
                     /locus_tag="JBH85_03365"
     CDS             6293..6856
                     /locus_tag="JBH85_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAU0945230.1"
                     /translation="MQKICRFIFKLIGWKIVGELPNEKKYIVIVAPHTSNWDFVICLC
                     ARFVVGVKINFLAKHQLFFFPLSYFLRAVGGTPVDRSKKGNRVEKVVELFRQHDELKL
                     GLAPEGTRSPVTRWKEGFYHIARQAGIPIVMVGPDYSTKEIRIHEPFWTTGDIKKDFQ
                     CIIEFFRTIKGYRPKEIPDYNPKDSDA"
     gene            complement(6853..7167)
                     /locus_tag="JBH85_03370"
     CDS             complement(6853..7167)
                     /locus_tag="JBH85_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HAU0945231.1"
                     /translation="MGKDNLLIGMLIEETTTISFIEVCQKYHIPEELFIEMIEQGLFP
                     DQPSDPEKIALGQKELRRLESAFRLHRDLGINLPGVALALDLLEKIDQMHHELEILRK
                     HF"
     gene            complement(7170..8060)
                     /locus_tag="JBH85_03375"
     CDS             complement(7170..8060)
                     /locus_tag="JBH85_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HAU0945232.1"
                     /translation="MDKDYYKIMGVSQDASEKDIKMAYRKLARKYHPDISKEPDAEER
                     FKEMAEAYEVLKDPKKRSEYDQYLKYKEFNPQSDGFTGRRTQEQPFQEFHFDSDFFET
                     LFGHSRYQQQPMTGQNYHGKITISLEEAYHGAVKNLQVPVEQGTETKIQTLKVKIPAG
                     VKSGQQIRLAGQGGSGSGGGARGDLYLTVEVMKHPIFDVMENDIYLTLPVTPWEAALG
                     ATVVIPTLAGKIDLKIPPGSQGGQKLRIKNRGLPGSPPGNQYVLLKIITPPAQTEEAK
                     ALYKKMAEVMPYNPRKTMGV"
     gene            complement(8100..9218)
                     /locus_tag="JBH85_03380"
     CDS             complement(8100..9218)
                     /locus_tag="JBH85_03380"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate/propionate family kinase"
                     /protein_id="HAU0945233.1"
                     /translation="MRHSALLIINSGSSSVKFQVFSNTETLDLLAKGKIINIGGEPSF
                     TAVNETLEHQRTLITLEKDMTYEQAIHLILDWISQQQQSWEIHAVAHRVVHGGEYFTQ
                     SVLVTPQIISQLETLNSLAPLHQPHNLAAIKIIGRIKPELPQIACFDTAFHAQHTPLF
                     TTCALPEYLRQQGIRRYGFHGLSYEWISLVLKKDYPDLANNRIIIAHLGNGASLCAIN
                     RGISIDTTMSLTALDGLPMGTRCGSLDPGAVIYMMRELNLPPDKVEEILYNESGLLGL
                     SGKTNNVLELQSSPDKNAQFALEYFCLKTAQFIGMMAISLGGVDGIVFTGGIGENSEP
                     IRANILKRIECLHPFSVIVIPANEEKMMAMHTLTALRT"
     gene            complement(9215..10621)
                     /locus_tag="JBH85_03385"
     CDS             complement(9215..10621)
                     /locus_tag="JBH85_03385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional enoyl-CoA hydratase/phosphate
                     acetyltransferase"
                     /protein_id="HAU0945234.1"
                     /translation="MNNEFLENVTYEELTLGRRASLNRTLTQDDINLFAAMSGDINPS
                     HVDPQFAKSDVFHGVVGHGMWSGALISTLLGTVLPGPGTIYLEQDIQFITPVRIGDNL
                     TITIVVRDKHPGKSIVHFDCMGVNQKGETVIKGLAKVIAPTKKMKVPRTVLPLVQIHH
                     NDHFNKIIEACSNLPSIKTAVVHPVTANVLEAVYDSVKAGLITPVLIGPMAKIKCAAS
                     EAKIDLSNWEMIDTEHSDAAAFKAVELAASGKVDSIMKGALHTDELMSAVVPATSGLR
                     TKYRISHAYVMDVPTYHKPLIITDAAINIAPNAADKADICQNAINLWRILYGEEIKPK
                     VAILAAVEIVNPKMQATVDAAVLCKMADRGQIINGILDGPLAFDNAINKQASKEKNII
                     SPVAGDADILLVPDIESGNMLAKQLTFLGHADAAGIVLGARVPIILASRADSLRTRLL
                     SCAVATKIAAARKAGKIK"
     gene            complement(10633..12483)
                     /locus_tag="JBH85_03390"
     CDS             complement(10633..12483)
                     /locus_tag="JBH85_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAU0945235.1"
                     /translation="MSFMECCYTIFYKSNTYRMQGMKKTNEKPINKTNEMPASSKKEI
                     VSPLEQTPASEQSDPIFRFIDKLYQANLGKLTAGISPAALGTAYYSWFAQLLQSPGSM
                     LRLASYPLLHANDYLSNLFKYDKPRDGKDVRFHTDNWSYYPWRLWAEQFLQFEDWCLQ
                     ASSKVPGIPLHVKRTVTFSTRQILDALSPSNFVLTNPDLLQETIRSNGQNLIRGTELA
                     FQDFVEKITGSPPAGVENFIPGKQVAITKGKVVYSNHLIELIQYTPQTEKVYKEPILI
                     LPAWIMKYYILDLLPENSLVNWLVRQGHTVFIVSWRNPTKEDRNLGLDDYYKLGAMDA
                     INAVSNAIPHTKIHLMGYCLGGTLALLTAAAMAHDHDNRLKTLSLLAAQGDFIDAGEL
                     LLFITKSEVSFLKSMMWEQGYLDTKQMSGTFQMLRSYDLIWSKMVQDYMHGTQRGMIP
                     LLAWNADATRMPYKMHSEYLEKLFLNNDFAEGRFILDGKPVVGENIRIPAFVVSTEKD
                     HVAPWKSVYKTHLLINSDITFVLTNGGHNAGIVSEPGHEGRYYRIRERKMDSTYLDPT
                     TWVKRAELREGSWWIAWHDWLVNHSSQKQVSAPKLDKKLPNAPGKYVLQK"
     gene            12637..12948
                     /locus_tag="JBH85_03395"
     CDS             12637..12948
                     /locus_tag="JBH85_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HAU0945236.1"
                     /translation="MLKCLSSVIIVFLILFTTGCQTNTVSNMFIPSNPSGMTLAQSVK
                     DSLMESNDPVINQIHVESNQNVVILSGYVKKIRQSDIAEQIARQVQGVQSVENRIIVR
                     P"
     gene            complement(13039..13329)
                     /locus_tag="JBH85_03400"
     CDS             complement(13039..13329)
                     /locus_tag="JBH85_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945237.1"
                     /translation="MNGCKISPVGLGLSLGILWGLSLLVMGLIAYFYAYGRPFVEAVA
                     TLYLGYEPSILGSFIGGVIGFIDGFVTGFLIAWLYNCFSCCSCCRGKENKKE"
     gene            13446..14096
                     /locus_tag="JBH85_03405"
     CDS             13446..14096
                     /locus_tag="JBH85_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945238.1"
                     /translation="MNYFIGLFFGLLNAVICYAEPNGSSLPKELIKVNKKNNPKCVEF
                     VTYKGELYCSVVPLADSSGDSQVIHYEKQIVRFDDRPWKIAWGKKTDKVATVEYIPVG
                     DDINNWKELITTQFMPGLTHMTPAQFGNQFLYNLNQSGVKYIVHVIEEKPELLIFEFK
                     IQKPANLQQDEILKITKGKDGIYVLHYAIKKSDMTKENRDKWIKNLKNSFIKISTP"
     gene            14159..15577
                     /locus_tag="JBH85_03410"
     CDS             14159..15577
                     /locus_tag="JBH85_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAU0945239.1"
                     /translation="MAIGRIIHYSTANDIQQGIIMKLSFLGATGTVTGSKYLVESNNK
                     KILVDCGLFQGLKELRLRNWSPLPVSPKSIDAVVLTHAHIDHSGYLPLLVKQGFKGRI
                     YATAATTDLCSILLPDSGFLHEEDARRANKYGYSKHHPALPLYTQEDANNTLKYFESV
                     EYDTPYPLMDDCEISWHRAGHILGSAFIQFQTKQIKLLFSGDIGRLNDPVMKPSELMK
                     STDYLVIESTYGNRLHDKTDPLAFIANIVNTTCKRGGTVLIPAFAVGRAQTMLYYLYI
                     LKQKKLIPDVPVYLDSPMAIDATELLLKHHNEHRLSAEECRAVCQIATYVHAPNESMA
                     VDWERESKIIISASGMMTGGRVLHHLKVYAPDPASTILLTGFQAAGTRGEKMLNHEPS
                     VKIHGDDYPVRAQVATLTNASAHADYEEILIWLKHFEKAPKEVFITHGEPQAALGLKG
                     HIETELGWNCKIPDYLQKVNLD"
     gene            15942..16193
                     /locus_tag="JBH85_03415"
     CDS             15942..16193
                     /locus_tag="JBH85_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945240.1"
                     /translation="MNKLQLTGAALAVGAASMFALAPAFAVDATATTIHCKGVNACKG
                     QGSCKTADNACKGQNSCKGKGILEMSKEDCEKQGGTVAE"
     gene            16242..17138
                     /locus_tag="JBH85_03420"
     CDS             16242..17138
                     /locus_tag="JBH85_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HAU0945241.1"
                     /translation="MPGPHSFLWSNMEVFPNKLAQKLPYLGFGLGLRPNYYEEILTSK
                     PDLDWFEILTENYLIPGGKPLYYLDKIREHYPIVMHGVSLSLGSSDPLDFDYLKQVQE
                     LASRIEPAWISDHLCWTGVHGLNTHDLLPVPYTSEAIQHIVSRIQVIQDFLKRPFLIE
                     NVSSYLTYKQSEMSEWDFILEIVKQSGCYLLLDVNNVYVSSFNHNFDPMAYINSMPPG
                     RVAQIHLAGHTNHGDYIIDTHNAPVIEPVWDLYEATIQRLGPVSTMIERDDNMPDFSE
                     LLSEINHAKRLAIQAAKEKVAV"
     gene            17135..17923
                     /locus_tag="JBH85_03425"
     CDS             17135..17923
                     /locus_tag="JBH85_03425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HAU0945242.1"
                     /translation="MKSLLTLQTQFQEFIYSGQGSIKESIVPTKLVSTETRLNIYKDG
                     YRLRLIECLAANYPALYAYLGTEEFEKLSARYIDSYPSAYRSIRWYGDRLPELIKKYY
                     AKSCYYLYELAELEWKMTLAFDAADDTVLNVEEMAAVPPESWAEMGFVLHSSVHRLDF
                     CWNVFSLWQALVNNLEIPELKDSPATTGWVLWRGQNYIIQYYSLSEEEAWALDALIQG
                     SSFGVICEGLCQWMSAEEVGMKAASYLKNWIQNGLLSQCRIRRN"
     gene            17975..19348
                     /locus_tag="JBH85_03430"
     CDS             17975..19348
                     /locus_tag="JBH85_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HAU0945243.1"
                     /translation="MLNPREIRTIEDAKRIVEERQLTHVKVGLFDIDGVMLGKYMSRN
                     KFFSALEHGFAFCDVILGWDSKDKLYDNVKYTGWHTGYPDASVRIVPSTCREILFEEN
                     QLLFMAEFSQAAEAICPRGILRRVINKAAGMGYDVYAALEYEFFVFDETPDSVRAKGF
                     RNLKPVTPDNFGYSIIRNTVHAEFYHQILTMAEKMDFPIEGLHTETGPGVLEAAIAVD
                     DAEAAGDKAALFKTFMKILAQRNNKMATFMAKWSGDYPGQSGHIHLSLRDRDGGKSAF
                     YESGREYNMSKIQRHFLAGQQKLMPEFLAMLSPTVNSYSRLIPGYWAPTEATWGVENR
                     TTALRVIPGSDKSQRIEYRLGSADANPYLALAAAIGSGLYGIENELEPEAEVKGNSYE
                     QHHSPALALPRTLWESAQNLKNSSAAYELFGQEFVEHFAASREWEEREFRKHITDWEL
                     DRYFEII"
     gene            19386..20783
                     /locus_tag="JBH85_03435"
     CDS             19386..20783
                     /locus_tag="JBH85_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HAU0945244.1"
                     /translation="MIATLKTYSPVDNSLYVEREYANQEEIKTVLSKAQVAKKLWSLS
                     SLAERQEYCLAAVNEIVASKVDIAEEICWQMGRPIRYAAGEINGFEERARYMIAQAES
                     SLASVELPEKKGFTRYIKREPLGLVLVIAPWNYPYLTAVNAIIPALMAGNVVILKHSA
                     QTPLVAERFDQAFKKAGLPMGVFQYLHLTHEDTEQLMRSPAVNSVAFTGSVAGGERVE
                     QTVAGRFIPVNLELGGKDPAYIRADADLDHAVETVIDGAFFNSGQSCCGIERIYVHKE
                     IYEQFVNKAVNLVKQYKLGRPDDPETTLGPLVRASSADFVREQIKEAVAQGAVAHINT
                     RDFVMDRPGTPYLAPQILTDVNHRMRIMTEETFGPVVGIMSVDSDEEAIERMNDSDYG
                     LTAAVFTQDIHRGIAIGERLQTGTFFINRCDYLDPGLAWTGVKKSGRGCTLSAIGYEY
                     LTRPKSFHIRAKIET"
     gene            20913..22073
                     /locus_tag="JBH85_03440"
     CDS             20913..22073
                     /locus_tag="JBH85_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HAU0945245.1"
                     /translation="MKNQSLIVNWNYPTRILVGAGRINELAKVCRELGMNAPLLVTDP
                     GLASSLMVSKVIQQAQASGLRTGLFCQIKTNPTGDNVMNGVYAFKAGQHDGVIAFGGG
                     SALDAGKAIALMVGQDRPLWDFEDVGDNWTRVNVSAMAPVLAIPTTAGTGSEVGRASV
                     ITDAEKQVKKIIFHPKMLPAMVILDPVLTVGLPKSLTAATGMDALSHCLEAYCSNYYH
                     PMAEGIALEGIRLIKENLIQAYKDGSDLEARTHMLVASAMGATAFQRGLGAMHALAHP
                     LGAIYDVHHGRLNAVLMPYVLLANRSEIENKIEHLANYLSIANGFDGFLDWIEQMRLE
                     LGIENTLSQLGIDHSQIDRLAKMATEDAAAASNPVLFTLEQYKELLSKAIGE"
     gene            22203..22901
                     /locus_tag="JBH85_03445"
     CDS             22203..22901
                     /locus_tag="JBH85_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase"
                     /protein_id="HAU0945246.1"
                     /translation="MNLGILLCDKVSEVFVADHGQYPEMFANLLRPADSTLELTVFDA
                     EHGELPTDIHAVDAYLISGSRHGVNDDYPWIRKLEEFVRTLHASQKKLIGICFGHQLI
                     AKALGGKVIKSPKGWGVGMSQNQIYQFKEWMRPSLNCFNLLVSHQDQVIELPTGAEIL
                     AGSDFCPNYMMQIGSFFSVQGHPEFTKSYSRDLMVSREDSVNEIEFAKGMKSLELHED
                     DTIIAQWIVNFLKA"
     gene            22992..25226
                     /gene="lem21"
                     /locus_tag="JBH85_03450"
     CDS             22992..25226
                     /gene="lem21"
                     /locus_tag="JBH85_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem21"
                     /protein_id="HAU0945247.1"
                     /translation="MAKTIKATGDGACLFNAVSIGLSVEILSGRLDSQLDTPGYQALL
                     DEFAKHHPQFNPKSWKTLKEWLAYYNDTRDIELILAPVLFNLNQKYQDHLDEEILNEL
                     TNLVWKNKANIENGQAWFQLQNTGDLGEALFPKLENLDLKKDRAPLLDKLREILKDYK
                     LELTRENVKQFLTEKAKELLSALKKKISSDPHAFQRGYSCDELKGMTDALAISLVENR
                     EEDITDNRIKIRLENQEEHWNVLCNEEDSERFLDSTPSRLKMTSLEAYRGDKQVSAPT
                     SEQLDLIEEPGVFLRERTIDNPGLGNCAFYAFAIGLVNIIQEEAKYNRRTMFDRWVGL
                     DRSISGQYDEILKLNLEDPDKELLDRLQSSLRIVTYQYQIRELRNVCVFRNGNYNRLT
                     GNSNFVNFAALYYGDPLDTDSRFNPFADSVPILIKMANIDRDSVHPGHENDVLVPLFL
                     DLLYGDTTNPADITLETEPKSDSPIITAMNNITQDFFWGTHLDLNYLAEAFEVNLHVL
                     RNNSPIQEFVDIPERHTLTLTNSNNTHWTTQITTARATTGMLLGRNPHLSGAKRTGEQ
                     QRVNEGFPGKESANDFMIPPFDEISNPHHKKEVETNKPIGKGFFHDRPVVSEEQRKLE
                     QLKRIVANATLAYTTYSESIWFCFFHYHGQTGRDRANNFCKTFSKITDYGQAKEALVH
                     YLNDSRNGNTHPHSYRTMLLHELQGNHDNKKDLQYLSRHFTSSLNKLASVLEVQLFAN
                     RYVP"
     gene            complement(25483..26238)
                     /locus_tag="JBH85_03455"
     CDS             complement(25483..26238)
                     /locus_tag="JBH85_03455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAU0945248.1"
                     /translation="MPEWFEITADFIHNSRQYRYPGIHVIHLIQRDTMQNIQHLIDYI
                     LHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTPFLPGDSLLFAAGSIAAQPGNPM
                     NIMLLFVLLFMASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGK
                     TIILARFIPIIRTFAPFIAGIGRMRSLHFTLFNLISAILWIGSLLSLGYYLGSIPLIK
                     ENFSLVIYGVIAISILPPIIALISKKSTSSIKK"
     gene            26352..26575
                     /locus_tag="JBH85_03460"
                     /pseudo
     CDS             26352..26575
                     /locus_tag="JBH85_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844426.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            26606..27115
                     /locus_tag="JBH85_03465"
     CDS             26606..27115
                     /locus_tag="JBH85_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945249.1"
                     /translation="MKKWNSFLLLIYLSLFIGHAHAITSLLTNTSLLTNFAQLVKAVE
                     QGDDVKAIIRLDRCQITDPALQTQLVQNLDGASTRFNFTEYLHFRTRINDQLRDTVTT
                     VSSKIFEYSPGVFLSVSSRLNVFEDNTATLRVNFYNPALGTSVLIIDWLCDISNGNDE
                     NGLFLYNSP"
BASE COUNT         8125 a         4935 c         5814 g         8409 t
ORIGIN      
        1 aaaattaaag tttaacttat caagaatagt tttttacaaa aacagaaaat cataagctct
       61 gttttactgc atcatacaaa ctagtaaatt gaatatcttc acccaatgca gtttttaaca
      121 gatcaatctt caatcgtttg gacgctcgca tgaactctct tttcataggg cttgcttttt
      181 cccaagcttg ctcaaaggac tcataggatg ctgattcaat tcctaatgcg tttgctaccg
      241 tttgttgtag ttcgcccata tgggttgggt tgccatcggc aacattatag acagccgatg
      301 ttgtttgctt ttggccaagc aaataagcta ttaaagccaa atccttgaca aaaatatgat
      361 tggtaaaagg ggcttcagtc ggttttatta ttggaatttt cgatttggct gcatcggctg
      421 ggattctgtt cggtccgtat atgcctgcaa tacgcaataa ggaaagctct ttattgtgtt
      481 gctgacaata ggccagccat tgttgttctg catccaatcg tctttgttga cgtggggagt
      541 caataataca agctgataat tcgtcaaccc aggctccttg atggtttcca tagactccac
      601 ttgaaccaaa gtaaataatt ttctttgcat ttaatgaact ttgatttaaa aactgttgta
      661 agaaagtatc gcaggtacct tgagaaggtg ggggaattag atagtagata atggagtcgg
      721 gctcgctcca atgaaatggg tattcgagat catggcttat atgctgtagt tttgaaagtt
      781 ccaattcctt ttttaattgt cgtgatacta cggttacctg ttgatgatgc ccaagaagct
      841 cttgggccag gtaataaccg caatagccat aaccaagaat taaatgatgc ataagtagtc
      901 ccgataaatt aaaactggtt tattgtttag cctggaagcg gcataagttc tgaaaatcac
      961 agcgttggca aatggtcaga ttttgagggc gtggtggaca atagccagac ttaatttctt
     1021 cagctaaatg agttaattgt tctagccagc gttgtcgata gtcttcccaa ttttcatcct
     1081 ctttcaaagt attaatctct ttggtttccc atttttcttc gctaaaaccg ctgagcttga
     1141 tttttccggt ttttaattga atcaataaca aagtattgat ttgttcgtta agcaacgcat
     1201 aaagtagcaa ttgaggctcc attggtcttt cttcattcca tggtttgccg ccagggagag
     1261 tgcttttgta atcaatgacc cattgcttgt tacctacttc atccagtctg tccactctta
     1321 ctttaaaatc gagcccagcc aaattgatcg aatgattttc ttccaggcct gtgattttaa
     1381 aaggagggcg ttgcttttcc cattccagat aagacaagat aattcgtttt aatctcatgt
     1441 attcaacatt ggcaaccaag tcaggaaaag tctgggagtg ttgttgccta atcggattta
     1501 aagcgccttg aattgcttga tcaatgaatc gttcaagttc agcgggtttt aatttaatta
     1561 agtgttcctg attttccaat ctttgccaga gcaactccag gattttatgg attaattgac
     1621 ctttttcctt gtcatccatt ccatctgtag tttttagaac agggtttgcc ttaagtcggt
     1681 gttgtgctaa tgctttaaaa gggcatttgg cctgattgct tagtaagctg gttccgccag
     1741 aaatggattc atcaggtttt acaggcactt catagttttc ttcaagagga accaaacaac
     1801 tttgaacatt tgttttattg tcagcaggcc ggctgaggta ggcaggataa tgagtaatca
     1861 atgagcaggg taaattaggc gtgtcatcgt caaattgtgg ataactaaaa acggtttcca
     1921 cgctacctcg ttgcagtctt tgcaaaattt gcttggcata ttggagctct cttgccggga
     1981 tactgtgagg catacccagt tcacgctgta attcaaatgg gataaagggc gataaacgtg
     2041 tttgttgagg taaacatcga tcagtcaatc ccattaccca aaggctgtca aactcgcaac
     2101 ctgatgcttc taacaatccc aaaatttgaa ttggtgaatt gcttttttgt ggttgaaaaa
     2161 tagtgttgtc tatgagttgt tttaacgctt caaatgcctc ttttttagtc aaatggctgc
     2221 ttatcagact taattgtctg aattcgtcaa aaatcattgt aaagcgatta aagcattgat
     2281 aatcctctga gttcaaaaca taatctccag gaaaaccaat gccatttaac ctctcctgaa
     2341 ataactcaat ccactcatcc agggtagttt tttccggata aaaattcatg ttttttaaca
     2401 attcagccag tttaggcgtg tggtgggcaa tgtcctcaat aaataatttt gtggggaaag
     2461 attggtcttg caacaacttg ctttcctgta agtaatctga tctttgaaga aactcatctt
     2521 ttgccttgcc aaggtagggt gattggagca gcaaagctgc ttgatgatta tttaagagat
     2581 tgtgatcaag actcagccaa atgagggcat gagagatcaa gtgaaatgcg cttaatggtt
     2641 tgcctaaaga aatattaaat aaattgggtt caaagcagtc gcgtaaaatt cgttgcaaaa
     2701 ccgatgattc ttgttcaaga ttaggcacaa caaccccgat ttgctttttt ccttgttgaa
     2761 ttttcttctc caaccaggtc atcaattcct ggtattctgt ttttttgtct ttagctgaga
     2821 aaacctccgg agtctcctgg ttttctttta aatcataacc atattgaatt accccctgcg
     2881 cgttcaaata attttgcagg gataattgtt gtggattaaa gtcatcaaag cacatccaga
     2941 caacggtttt taagagccct tgataattgg aatcaagcaa gtagggaatt aattgatgct
     3001 gatggatggc agaaatttct ttaagtattt tattaaaaga ttgccaccat tgttgaaatt
     3061 gttgtgtttg cggcgtgtag tgaaaagcag gcgcttcagg tgtaagttgc cattgctcac
     3121 agtattccca tgcttgcatt attgttttaa gcaagccttc cgtgtaaatg atagaaggat
     3181 gagattcaat tagttttcgc cataaatgtt ggcattgtgc cgaatttaaa agtatgggat
     3241 gttccaggtc tggtttttgg aatttgagtt gttcaaaaga gttaaccaga aatgtattaa
     3301 aaggcaagca tattggcttg gtaattgttt ttctggacca ataagtgaag taattctgaa
     3361 ggatggttcc gcttaatcta ttgttaggag taataacgac tgctccttga gacaatagat
     3421 tataaagctc atctgactta agttcatcgg tgaactttat gggcatgtcc ttctgattta
     3481 ctttttgcca atgcatgctt atgtttttgt tgacgtcgag tttgggtatg caggatatcg
     3541 tatactaatt gtcctcttaa atacatagcg gcaagcccgg atgcaatagc cagcaaaata
     3601 ccaaaaagca cataactata ggccagaaca attaggtaga acaaaaccat gctggttaga
     3661 gtggttacct caaaaagctt ggcatgatct tctgacatca agaagacaag accgagatca
     3721 aagacaggca gtgaggctat gaccatactg aatcctaacc aaaaggtttt tcttttatat
     3781 ggttttttac agcgaacgat ggcttcccca aaaatggccc cggtgcagga cgctacaacc
     3841 atgccaagaa tgaccgattg atagaccggg ataatttctt caattccaat cgaagtgaga
     3901 aaggcgttga tcagtatcgt gccaacgacc gataacaagc caaaatagat tgctgataat
     3961 aaccgtggat ttgagatcga aagtgctgga tctggtgtgt tcatgatgca cctgataatg
     4021 agttctatat gataaatttt agtacataat ttcaataatg tggacttggg tttgattaat
     4081 tttctatagt tatgggcaag agtggtcgtt atctagatct agaagacttg tatggaattt
     4141 aatgtttcgt gctaaggctt cgagacgatg cttatgcatc tcctcagccc aaacgaatcc
     4201 tggatatcaa ttggatttat atcatcctta tcagtaactc acgttaaatt aaatactttt
     4261 gaaaaagcag ggtaaaggaa aatgagagcg agtcggagtt gccaaaatag actataaata
     4321 gagtaagtta gattaatgac ttcgagatta aaatgaactc aattcttttt aaaaatgcca
     4381 acgttatttt gggagagtct acagagctta aaaaaaaatt tgatgttctg gtgcaaaata
     4441 atttgatctc ccaggtgtcg caaacaccgc ttcaaccttt cgaaggaatg cgcattatcg
     4501 atgtcaaagg gaaaacatta atgcctggtt taatcgatgc ccatgctcat attaccggat
     4561 tgaccctaag cccaaaaaat atcttctact ctgaagcaga gatatttttg gctgctgcta
     4621 cttatcttaa aaacagcttg ttttatggtt ttacgacttt acgagaagct ggaggcgctg
     4681 attttagaat agcacaatta ctagataata agagtattcc agggcctcga ttattttatt
     4741 ctgggagggc attaactcaa acgggtggag gagctgactt tagaaaaccg aatgaacaga
     4801 ttgatccttg tgggcatgtt ggctctttct cgacgatgtc ggttattgca gatgggattg
     4861 atgaagtgag aaaggctgct cgagaagagt taaggaaagg agcaacacaa ttaaaagtat
     4921 ttgcttcagg cggggttgtt ttcccttccc ttagcaatcc aacactgtat gaatattccg
     4981 aggaggagtt atcgactatt gttgaagagg cacgagcaag aaatacttat gttatggccc
     5041 atgcttatag cgatgaatca gtaagaaagt gcattaaatc gggtgtgcgt tccattgaac
     5101 acgctaattt tgtaagcgaa ccaactgtag aattaatgtc ggaaagtggt gtgttttacg
     5161 atccgacatt tatttcattg gtgcaaagaa ttgaaagtgc tgaacaaaac cggttgtctg
     5221 aagctattgt agccaatttg aaaaatacta ttgaaaaagg caaaaaggtt tatgaatatg
     5281 ctttaaaata taagattcct attgcttttg gtacagattt gtggggtcct gaggcacaga
     5341 gagatcagtt aagagaattt gaaatgctca aggagcttga ttcagcagcc aatattattc
     5401 gttcagctac cgtagtcaat gcggaattat taatgcaaaa gggaaaactt ggcgtcataa
     5461 gcgaaggagc ttatgctgat ctgttagtag tagatggtaa tcctttagtc aatttaaatg
     5521 ttctgctccg cccggatgaa aaccttaaat tgattatgaa agatggggtc atttataaga
     5581 atgaattata aagcaaggtc tttttcagaa gtcctgttga atactagggt atagaaatgg
     5641 aagccaataa ctgtttcatt ttttctaaac caagctcatt catagttgct atattttttt
     5701 ctggtatagt gtgggtatca ccataggcag cgattgcttt gtctaggctg tcttccctta
     5761 ataaatggat catgggataa ggggaacgat tagtgtagtt ggcaacatca tctggagaag
     5821 tatcagcaaa ataataatcc gggtggaaag tagcgagttg gtatatccct tcataattta
     5881 agttttgaat taattgttca gcaaggctta tgaaatccag ataagaaaaa aagtctttaa
     5941 atgctcgagc aaaaataagc agagtcgttt caacagcagg gtttgcttcc agaaattgaa
     6001 tttcagtgat taaatcttta agtgcctggt gttttttggg ggtatctgaa gtaattattc
     6061 ttaaagtgcc tttgtttacg gggccttttg caaaagggca aatcgtgtaa ttgataatga
     6121 atgtccgcac ccatttcatg gtgtgttctg aaatcaatgg atcatgatag agcatagggt
     6181 aagtggtttc gaaaaaaggg atattgtacc ttgatcatgt gaaataacaa tttcttctaa
     6241 atagatatca aaatcaagta tactttggtt aaaacaaaaa tggatttttg tcatgcaaaa
     6301 aatatgtcgt tttattttta aattaatcgg ttggaagata gttggtgaat taccgaatga
     6361 aaaaaaatat attgtgattg ttgctccgca taccagcaat tgggactttg tcatttgcct
     6421 gtgtgcacgt tttgttgtcg gggttaaaat caatttttta gcgaaacatc agttattttt
     6481 tttccctttg agctattttt tgcgtgcagt tggaggtact ccggttgatc gttctaaaaa
     6541 ggggaacagg gttgagaaag ttgtagagtt gtttcgccaa cacgatgaat taaagctggg
     6601 cctagctccc gaaggtaccc gaagtccggt gaccagatgg aaagaggggt tttatcatat
     6661 tgctcggcaa gcaggtattc ctatagtgat ggtggggcct gattattcta ctaaagaaat
     6721 ccgtatccat gaaccttttt ggaccacagg agatattaaa aaggattttc agtgcattat
     6781 cgagtttttt agaacgatta aaggttatcg ccctaaagag atacctgatt ataatcctaa
     6841 agattctgat gcctaaaaat gcttgcgtaa aatttcaagc tcatgatgca tttgatcaat
     6901 tttttccagt aaatcaagag ctaaagcgac tccaggcagg ttaatgccta aatctctatg
     6961 taatcgaaag gcggattcaa ggcgacgcaa ttctttttgg cctaatgcaa ttttttcggg
     7021 atcagatggt tgatctggaa acaaaccttg ttcgatcatt tcaatgaata attcttcagg
     7081 aatatgatac ttttggcata cttcaataaa agaaatcgtt gtggtttctt cgataagcat
     7141 gcctattaaa agattgtctt tgcccatgct tatactccca tagtcttacg agggttgtaa
     7201 ggcattacct ccgccatttt tttatataaa gcttttgctt cttcagtttg agcagggggg
     7261 gtaataattt ttaatagaac atattgatta ccagggggtg aacctggtaa tccgcgattt
     7321 ttaattctga gtttttgccc gccttgtgag cccggaggga tttttaaatc gatttttcct
     7381 gccagggttg gtatgacaac cgtagctcct aaagcagctt cccacggtgt gacaggtaat
     7441 gtcagataaa tatcattctc catgacatca aatatggggt gtttcatcac ttcgactgtt
     7501 agataaaggt cgccacgagc cccccctcca cttccactgc ctccttgtcc tgccaagcga
     7561 atttgttgtc ctgatttaac ccctgcaggg attttaactt tcagggtctg tattttagtc
     7621 tctgtgcctt gttcaacagg aacttgtaag tttttaacag ctccatggta agcttcctcc
     7681 agactgatag tgattttgcc atgatagttt tgaccagtca tcggttgctg ttgatagcgc
     7741 gaatgtccaa acaaggtttc aaaaaaatcg ctgtcaaaat gaaattcctg aaagggttgc
     7801 tcttgagttc ttcgcccggt aaatccatcg ctttggggat tgaattcctt gtatttcaga
     7861 tattgatcat attcggatct ttttttaggg tctttcagta cttcataggc ttctgccatt
     7921 tctttaaatc gttcttcagc atctggttct ttactaatat cggggtgata tttgcgggct
     7981 aattttcggt aagccatttt gatgtctttt tcagaagcat cctgactgac tcccatgatt
     8041 ttatagtagt ctttatccat tttttatact cattacctat gccagtaaac aatacgcctt
     8101 tacgtcctga gggctgtcaa ggtatgcata gccatcattt tttcttcatt cgcaggaata
     8161 acgataacag aaaaagggtg taagcactct atcctcttaa ggatatttgc tctaatcggt
     8221 tctgaatttt cccctattcc tcctgtgaat acaataccat ctactccacc tagtgaaatg
     8281 gccatcattc caataaattg agctgttttc aggcaaaaat actccaaagc aaattgagcg
     8341 tttttatcag ggctggattg taattccagc acattattgg tttttcctga taaaccaagc
     8401 aagccggatt cgttataaag tatttcctct accttatctg gtggaagatt caattctctc
     8461 atcatgtaaa taacagcccc aggatccaaa ctgccacaac gagttcccat tggtaaacca
     8521 tccagcgctg tcaaactcat ggtggtgtct atactgattc ccctatttat agcgcacaag
     8581 ctagcgccgt tgcctaaatg ggcaataata attcgattgt tagccaaatc agggtagtct
     8641 tttttgagaa cgagagaaat ccattcatag gaaaggccat gaaatccata acgcctaatc
     8701 ccttgttgtc ttaaatattc gggcaaagca caagtagtaa ataatggagt atgttgagca
     8761 tgaaaggcgg tatcaaagca tgcaatctga ggtaattctg gcttaatccg accaatgatt
     8821 tttatggcag ccaaattatg aggctggtgt aggggcgcga gagaattcag tgtttccaat
     8881 tggctgatga tttgcggagt aaccaggaca ctttgagtga aatattctcc gccatgaacg
     8941 acccgatggg cgacagcatg aatttcccag ctttgctgtt gttggctaat ccagtccagt
     9001 ataagatgaa tggcttgctc atacgtcatg tccttttcca aagtgattag agttctctgg
     9061 tgctccaatg tttcgttaac tgcggtaaaa gatggttctc ctccaatatt aataatcttg
     9121 cctttggcga gaagatcaag tgtctctgta ttggagaaca cttgaaattt aacgctggag
     9181 gaacctgaat tgatgattaa cagtgcagaa tgcctcattt tattttgcct gctttacgag
     9241 ccgctgctat cttagttgct accgcacagg acaataaacg tgttcgtaat gaatcagctc
     9301 tgctggctag aatgataggg actcttgctc cgagaactat tcctgctgca tcagcatgtc
     9361 cgagaaaggt gagttgtttg gctagcatat ttcccgattc aatgtctggt accagcaaaa
     9421 tgtcggcatc accagctaca ggagagataa tgtttttttc cttactggct tgcttattga
     9481 tggcattatc aaaggcgagg gggccatcca gtatgccatt aattatctga cctcggtcag
     9541 ccattttaca caggacagcg gcatcaacgg ttgcctgcat tttgggattt actatctcaa
     9601 cagctgcaag gatagcgacc ttgggtttta tttcttctcc atataaaata cgccagagat
     9661 tgattgcatt ttgacatata tctgccttat ccgctgcgtt tggggctata ttaatggctg
     9721 cgtcggtaat gattaaaggt ttatggtaag ttggaacgtc cataacatag gcgtgactga
     9781 tgcggtattt ggttcttagt ccagaagtgg caggtaccac cgcagacatt aactcatcag
     9841 tatgcagggc gcctttcatg atagaatcga ctttcccgga tgccgctaat tcaactgctt
     9901 taaaagcagc agcatcactg tgttctgtat caatcatttc ccaattggat aaatcgattt
     9961 tagcctcact tgcagcacat ttgatttttg ccataggacc tattaatact ggagtaatta
    10021 aaccggcctt gactgagtca taaactgctt ccaggacatt ggcagtgacg ggatgaacaa
    10081 ctgctgtttt gattgagggc aagttactgc aggcttcaat gattttatta aagtgatcat
    10141 tgtgatggat ttgcaccaga ggcagaacag ttcggggtac cttcattttt ttagtcgggg
    10201 caatgacttt ggcaaggcct ttaattactg tttctccttt ttgatttacc cccatacagt
    10261 cgaaatgaac aatcgatttg ccaggatgtt tgtcacgaac aacgatggta attgtcagat
    10321 tatctccaat gcgaacggga gttataaatt gaatgtcttg ttcaagatag atagttccag
    10381 gcccgggaag gacagtgccc agcagggtag aaattaaagc tccagaccac atgccatgtc
    10441 cgactacgcc atgaaataca tcgcttttag caaattgagg atcgacatga gagggattta
    10501 tgtctccaga catagcggca aataaattaa tatcatcctg agttaatgta cgatttaagc
    10561 tggctctgcg tcctaaagtc agctcttcat aggtgacatt ttcaagaaat tcattattca
    10621 ttactaattc ctttattttt gtaatacata tttcccagga gcgtttggta gttttttgtc
    10681 cagtttgggt gcagacacct gtttttggga tgagtgatta actaaccaat cgtgccaggc
    10741 aatccaccag gatccctctc ttaattcagc cctttttacc caggtagttg ggtcaagata
    10801 ggttgaatcc atttttcttt cccgaatgcg gtaataacgt ccttcatgtc cgggttcact
    10861 gactattcca gcgttatgac ctccattagt caggacaaaa gtaatatcgg aattgattaa
    10921 caaatgggtt ttgtatacgg atttccacgg agctacgtga tctttttctg tgcttacgac
    10981 aaaagcaggt atacgaatat tttcacctac gaccggcttt ccgtccagaa taaatcggcc
    11041 ttcggcaaaa tcattattaa ggaacagttt ttccaggtat tcactatgca ttttgtatgg
    11101 catacgagtt gcgtcggcgt tccatgccag taaagggatc atccctcttt gagtcccgtg
    11161 catgtaatcc tgaaccattt tagaccaaat caaatcgtac gaacggagca tttgaaaagt
    11221 tccagacatt tgttttgtgt ccagataccc ttgctcccac atcatacttt ttaaaaagga
    11281 tacttcactt ttggttataa agagcagtaa ttcgccggca tcaataaaat cgccttgagc
    11341 tgcgagcagg gataatgttt taagacggtt atcgtgatca tgagccatcg ctgctgcggt
    11401 taacagagcc agggtgcccc caagacaata acccattaaa tggattttgg tatgtggaat
    11461 ggcattgctc actgcattta tggcatccat agcgcccaac ttataataat catccagtcc
    11521 aagatttcta tcttctttcg ttggattgcg ccaggataca ataaatacag tatgtccctg
    11581 tctaaccagc cagtttacta aagagttttc cggcagcaaa tccaggatat aatatttcat
    11641 gatccaggcg ggtaaaatca agatcggttc tttgtatacc ttttctgttt ggggtgtgta
    11701 ctggattaat tcaattaaat gattgctata aacgactttc ccctttgtta tagcgacttg
    11761 tttccccggg ataaaattct cgactcccgc aggaggagaa ccggttatct tttctacaaa
    11821 atcctgaaaa gcaagttctg ttccacgaat taaattttgt ccgttcgagc gaattgtttc
    11881 ctgaagcaaa tcaggattgg tcaaaacaaa attggatggt gacaaggcat caagaatctg
    11941 tctggtggaa aaggttactg tccttttgac atgaagtggt atccctggaa ctttgctcga
    12001 ggcttgtaaa caccaatctt cgaattggag aaattgttca gcccaaagcc gccagggata
    12061 gtaactccag ttatctgtat gaaagcgtac atctttgcca tctctgggct tgtcatactt
    12121 gaaaaggttg gaaagataat cgttagcatg caacagagga taagaggcca gtcgtaacat
    12181 tgaaccaggt gattgcagca gttgagcaaa ccaggagtaa taggctgtac ctaatgcggc
    12241 aggacttata ccagcagtta actttcccag gttagcttga tatagcttat caatgaatct
    12301 gaaaatgggg tcagattgtt cggaagcagg tgtttgttct agtgggctta cgatttcttt
    12361 ttttgaggat gcaggcattt catttgtttt attgataggt ttctcgtttg tttttttcat
    12421 accttgcatc ctgtaggtgt ttgatttata aaaaatagta tagcagcatt ccataaatga
    12481 caatttaatc tgagttattg tttgaaaaga cttaagtttc tcttgctaaa cgatgattta
    12541 taggcagtgg cttgactata gaaataaggg gagttgtgct attattcggt tcttttaatt
    12601 tagtgtagat aaatccactc tatcttggag attgtgatgc taaaatgttt atccagtgta
    12661 atcattgtgt ttttgatttt gtttacaacc ggttgtcaaa ccaatactgt gagtaacatg
    12721 tttattccgt ctaatccatc aggcatgact ttggctcagt cggtaaaaga ttcgctaatg
    12781 gaaagcaatg atcctgtgat caatcaaatt catgtggaat ccaatcaaaa tgtggtcata
    12841 ttaagtggtt atgtgaaaaa aattcgccag agtgatatcg cagaacaaat tgccagacaa
    12901 gtccagggag ttcagtcagt ggagaaccgt attattgttc gcccctaaac tattttaact
    12961 cttgaataaa ttaatttctc ttgtcaatga cgttggtttt aacgtcattg accacatgat
    13021 ttctcattat tagcaagctt attctttttt attttcttta cctcggcagc aagaacaaca
    13081 actaaaacaa ttgtaaagcc aagcgataag gaatcccgtg acgaacccat caataaagcc
    13141 aatgacgcca ccaatgaagc ttcccaggat agaaggttcg tagccaaggt ataaggtggc
    13201 aactgcttca acaaagggcc tgccataggc ataaaaatag gcgattaatc ccatgactaa
    13261 caatgataat ccccatagaa ttcctaaaga aagacccagt ccaacaggac tgattttgca
    13321 accattcatg gcaatctcct tattagctct ctaatataat tatataccag tttgtctaat
    13381 caaaattgtg ggtcatgggt ttcaacgtct acaattaaat agtatccact tttgggatta
    13441 agagcatgaa ttatttcatt gggttgtttt ttggattact taatgccgtt atttgctacg
    13501 cagagcctaa tggctcttct cttccaaaag aattaatcaa agtcaataaa aaaaataatc
    13561 ctaaatgtgt ggagtttgta acctataagg gagaacttta ttgcagtgtt gttcctttgg
    13621 ctgattcctc aggtgattca caagttatcc attatgagaa gcaaatagta cgttttgatg
    13681 accggccctg gaagatcgct tggggaaaga aaacggataa ggtagctacc gttgagtata
    13741 ttcctgttgg agatgacatt aataactgga aagagttgat taccacacaa tttatgccgg
    13801 gtttaactca catgacacca gcccagtttg gcaatcaatt tttatataac ctgaatcaat
    13861 caggggtaaa atatattgtc catgtcattg aggaaaaacc cgagctactc atttttgaat
    13921 ttaaaattca aaagcctgct aatctgcaac aagacgaaat cttgaaaatt accaaaggta
    13981 aggacggaat ttatgtactt cattatgcaa ttaaaaaatc ggatatgact aaagagaatc
    14041 gagacaagtg gataaaaaac ttaaaaaaca gttttataaa aatatccaca ccgtaagtgc
    14101 aaaagaatgg gcgggataaa aagttagcat ttgaagcttc aaatgacttt aaaataaatt
    14161 ggcaataggt cgtattattc attacagtac tgcgaatgac atacaacaag gtattattat
    14221 gaaattgtct tttttaggtg cgactggtac ggttaccggc tctaagtacc tggtagaatc
    14281 aaataataaa aagattttgg tagattgcgg acttttccag ggtttaaaag aattgagact
    14341 aagaaactgg tcaccccttc ctgtgtctcc caaatcaata gatgctgttg ttttgaccca
    14401 cgcacatatt gatcatagcg gttatttgcc attattggtg aaacaaggat ttaaggggcg
    14461 catctatgca actgctgcga caaccgattt atgttctatc ttactgcccg atagcggttt
    14521 tttgcacgag gaagatgcca gaagggcaaa taaatatggg tatagcaagc accatccggc
    14581 tttacctttg tatactcagg aagatgcaaa taatacctta aagtattttg aatcagtaga
    14641 atatgacacc ccttatcctt taatggatga ttgcgaaatc agttggcata gggctgggca
    14701 tatattaggg tctgcattta ttcaatttca aacaaagcaa atcaagttat tatttagtgg
    14761 tgatattgga agactcaatg atcctgttat gaagccttcc gagttaatga aatctaccga
    14821 ttatttggtg attgaatcaa cttatgggaa tcgcttgcat gataaaaccg atcctttagc
    14881 gtttatagcc aacatagtca atacgacttg taaaagaggc ggtacagtgc taattcctgc
    14941 ttttgcagtc ggtagagcac aaactatgtt gtattatttg tatattttaa aacaaaaaaa
    15001 attaattcct gatgtccctg tctatctgga tagccctatg gctattgatg ccactgaatt
    15061 attattaaaa catcataacg aacaccgctt aagtgcagag gagtgccgag ccgtctgcca
    15121 aatagcgact tatgtccatg ccccaaatga atccatggca gtggattggg agcgcgaatc
    15181 taaaattatt atttctgcaa gtggcatgat gacagggggc cgggttttgc atcatttgaa
    15241 ggtatatgct cctgatcctg caagtactat ccttttgact ggattccagg ctgctggaac
    15301 gagaggtgaa aaaatgttaa atcatgagcc gtccgttaaa atccatggtg atgattaccc
    15361 cgtcagggct caggtagcta cgttaaccaa tgcctctgct catgcagatt atgaggaaat
    15421 actaatttgg ctaaagcatt ttgagaaggc cccaaaggaa gtctttatta cccatggcga
    15481 gcctcaagcg gcattgggat taaaggggca tattgaaacg gaactggggt ggaattgtaa
    15541 gatacctgac tatcttcaaa aggtaaactt ggattgataa atcccaagaa tagtacttaa
    15601 tttaatattc tgagcaaaag tggttagtcc cctaaaaatc agctttagtt gaaacagttg
    15661 ggcatgaatt gaatctgatg atccagaatc tataaaatct cagattgatt ccattagacg
    15721 ctgagtctgt ttggtttaat ggctgggttt tggtgatata aagtattttc caagactcac
    15781 agctgttcga gtatctttac ttaactattt gaaaaaataa ttatttattg gtttggataa
    15841 tcttgacttt tttgattatt gattcttaaa atgctattgg caaaacgaga gatctttgcc
    15901 ggatttataa tcattttcat ttaattaaaa agggaattgc tatgaataaa ttacaattaa
    15961 caggcgctgc tttagctgtt ggcgctgctt ctatgtttgc tttggctcct gcatttgctg
    16021 ttgatgctac agctaccact attcactgta aaggtgttaa tgcttgtaaa ggccaaggca
    16081 gctgtaaaac tgctgataac gcttgcaaag gtcaaaattc ttgcaaaggc aaaggcattc
    16141 ttgaaatgtc taaagaagat tgcgaaaaac aaggtggtac cgttgctgag taattaatag
    16201 caattatttc agtcgcatct taccaggtat gtagaacaaa catgcctggt ccccattctt
    16261 ttttatggtc taatatggaa gtattcccca ataaattggc tcaaaaatta ccatatttag
    16321 gttttggttt aggattacgg ccaaactatt atgaagaaat cctgacgagt aaacctgatt
    16381 tggattggtt tgaaatatta actgaaaatt atttaattcc tggaggcaag cctctctatt
    16441 atctggacaa aattcgcgaa cactatccta ttgtcatgca cggtgtttct ctttctctgg
    16501 gaagtagcga tcctttggat ttcgattatt taaaacaagt acaagaatta gcgtctcgca
    16561 ttgaaccagc ctggatttca gatcatttat gttggactgg cgttcatgga ttaaatacgc
    16621 atgatttatt accggttccg tatacaagtg aagcgattca gcacatagta tcccgtattc
    16681 aagtaataca agatttctta aaacgtcctt ttttgattga aaatgtatca agctacctta
    16741 catacaaaca gtcagaaatg tcagaatggg attttattct ggaaatagta aaacaatccg
    16801 gttgttattt attgttggat gtcaacaatg tttatgtcag ttcattcaat cataatttcg
    16861 atccaatggc ttatattaat tccatgcctc ctggaagagt agctcaaatc catttggcag
    16921 gtcacactaa tcacggagat tacattatag acactcacaa tgctccagta attgagccag
    16981 tttgggatct ttatgaggca accatacaga gacttgggcc tgtatctact atgattgaac
    17041 gtgatgataa catgcctgat tttagcgagc ttttaagtga aattaatcat gcaaaacgcc
    17101 ttgccataca agctgcaaaa gaaaaggtag ccgtatgaaa tcgctattga ctttacaaac
    17161 ccaatttcaa gaattcattt attccgggca gggatcaatt aaagagtcca tagttccaac
    17221 caagttagtt tcaacagaaa cgcgtctgaa tatttataaa gacggttatc gattgagatt
    17281 gattgaatgt ttggcagcga attaccccgc tttatatgcg tatttaggta ctgaggaatt
    17341 tgaaaagtta agtgctcgtt atattgattc ttacccatct gcttaccgtt caatccgatg
    17401 gtatggtgat agattgcctg aattgataaa aaagtactat gcgaagtctt gctattattt
    17461 gtatgaactg gctgagctgg aatggaaaat gaccttagcc ttcgatgcag cagatgatac
    17521 agtgcttaat gtagaagaga tggcagcagt gccgcccgaa tcctgggctg agatggggtt
    17581 tgtacttcat tcatcagtcc ataggcttga tttttgttgg aatgtttttt cattgtggca
    17641 agctttggtc aataatcttg agattccaga gttgaaagat agtcctgcta ctactggctg
    17701 ggtgttatgg cgaggtcaaa attatatcat tcaatattac agcttgtcgg aagaagaggc
    17761 ttgggcttta gacgctctga ttcagggctc ctcttttggg gtgatttgtg agggattatg
    17821 ccagtggatg tctgccgaag aggtcggaat gaaagcagcg tcttatttaa aaaactggat
    17881 tcaaaatggg ttattatctc agtgtcgtat tcgtcgcaat tagacattgg gaggtaaaga
    17941 agcttacatt gacagaacga cataaggata tgccatgcta aacccaagag agatccgaac
    18001 catagaagat gcaaaacgca tcgtggaaga aagacaatta actcatgtta aggttggtct
    18061 ttttgatatc gatggtgtga tgctgggcaa gtacatgagc cgtaacaagt ttttttcggc
    18121 tttggagcat ggttttgctt tttgtgatgt cattttagga tgggattcta aagataagct
    18181 ttatgataat gtgaaatata cgggttggca tacgggttac cctgacgcct cagtgcgaat
    18241 tgttccttca acctgtcgtg aaatactatt tgaagaaaat caactgttgt ttatggctga
    18301 attttcacaa gcagcagaag ccatctgtcc tcgcgggatc ttgcgtcgtg taatcaataa
    18361 agctgcgggt atggggtatg atgtttatgc cgcattggaa tatgaatttt ttgtatttga
    18421 tgaaacacct gacagcgtgc gtgcaaaagg atttcgtaat ctaaagcctg ttactcctga
    18481 taattttggc tactcaatta ttcgtaatac ggtacatgct gaattttatc atcaaattct
    18541 cactatggcg gaaaaaatgg atttccccat tgaaggttta catactgaaa caggcccggg
    18601 agttctggaa gcagcaatag cggttgatga tgccgaggcc gcaggagata aagcggcttt
    18661 gtttaaaaca tttatgaaaa ttctcgcgca acgcaataat aaaatggcaa cttttatggc
    18721 taaatggtca ggtgattacc ctgggcaaag tggtcatatt catctgtctt tgcgagatag
    18781 agatggtggc aagtctgctt tttatgaatc aggcagagaa tataatatga gcaaaattca
    18841 acgccatttt ttagccgggc agcaaaagtt gatgcctgaa tttttagcca tgttatcccc
    18901 gactgtgaat agctattcca gactaattcc cggctattgg gctccaacag aggcaacatg
    18961 gggtgtcgag aaccgcacca ctgctttacg agtgattccc ggcagtgata agtcacagcg
    19021 tattgaatat cgcttgggtt ctgcagatgc gaacccatat ctggcgttgg ctgctgccat
    19081 agggtcgggt ttatatggca ttgagaatga gttggagcct gaggctgagg taaaagggaa
    19141 ttcctacgag caacatcata gtccggcatt ggcgttgcct cgcacattat gggaatcggc
    19201 acaaaattta aaaaactctt ccgctgctta cgaattattt ggtcaagaat ttgttgagca
    19261 ttttgctgct tcaagagaat gggaagagag agagtttaga aaacatatta ctgattggga
    19321 actcgacagg tattttgaaa ttatttaatt gaaacgacag attttataaa atttatggat
    19381 taaaaatgat tgctacctta aaaacctatt ctcctgtcga taactctctt tatgttgaga
    19441 gagagtatgc gaatcaagaa gagataaaaa ctgttttaag caaagcacaa gtagcaaaaa
    19501 aactgtggtc tttgtcttct ctggccgaac gccaggaata ttgtttggct gctgtcaatg
    19561 aaatagtcgc tagcaaagta gacattgcag aagaaatttg ttggcaaatg ggaagaccaa
    19621 ttcgatacgc agctggtgaa atcaatgggt ttgaagagag agcaagatat atgattgcac
    19681 aggccgaatc atcactggct tctgtggagt tacctgaaaa aaaaggattt acaagataca
    19741 tcaaacgaga gccgttagga cttgtgttgg ttatagcgcc atggaattac ccctatctca
    19801 cagcagtcaa tgcgattatt cctgcactta tggcgggtaa tgttgtgatt ttgaaacatt
    19861 ctgcgcaaac tccgttagtg gctgagcgtt tcgatcaggc attcaaaaaa gcaggcttac
    19921 ccatgggtgt ttttcaatat ttgcatttga cacatgaaga tacagaacaa ctcatgagat
    19981 cgccagcagt taattctgtc gctttcacag gttcagttgc tggtggtgaa agagtggaac
    20041 agacagtggc aggacgtttc attcctgtga atttggagct aggtggaaaa gatccggctt
    20101 atatcagagc agacgctgat ttggaccatg cagtagaaac agttatagat ggtgcatttt
    20161 ttaattcagg ccaatcctgt tgtggtatag aaaggattta tgttcataaa gagatatacg
    20221 aacaatttgt taataaagca gttaatttgg ttaaacagta taaattggga cggcccgatg
    20281 atccagaaac cactctgggt ccactggtac gtgcttcttc agctgacttt gtcagagagc
    20341 aaatcaaaga agcggtagcc caaggagcag tagcacatat aaatacccgg gattttgtaa
    20401 tggatagacc tggtacaccc tatctggcac cgcaaatttt aaccgatgtt aatcatcgca
    20461 tgcgaattat gacagaagaa acttttggcc cagtcgtagg gatcatgtcg gttgatagtg
    20521 atgaagaggc aatcgaaagg atgaatgata gtgactatgg tttgaccgct gctgtattta
    20581 ctcaggatat tcatcgagga atagcgattg gtgaacgatt acaaacaggt acttttttta
    20641 tcaatcgttg cgactacctt gatcccggtt tggcttggac aggtgtaaaa aaatcaggca
    20701 ggggttgcac tttatccgcc ataggctatg agtatttaac gcggcccaaa tcattccata
    20761 tcagagctaa aattgagact taaagcctga tacctacgat tacctacgcc ttaaaactca
    20821 aaatataatt ataaaaaaga cctaatcttt cctgcggaaa gatacttgct atcagttaca
    20881 atggtctttt tcgaatcaaa ggaagatcac acatgaaaaa ccaatcatta attgtcaatt
    20941 ggaattaccc gacacgaatc ctggttgggg ctgggcgaat caatgaacta gcgaaagtat
    21001 gtcgtgagtt aggcatgaat gctcctctgt tagtcacaga cccgggattg gcttcgtcgt
    21061 taatggtgag taaagtcata caacaggctc aggcatccgg tttgcgaacg gggttatttt
    21121 gccaaattaa aacaaatcct accggtgaca atgtgatgaa tggagtctat gcttttaaag
    21181 ctggccagca tgatggcgtg attgctttcg gaggtggctc ggctttggat gccggcaaag
    21241 ccatcgcttt aatggttggc caggatcgac ctttatggga ttttgaggac gtgggtgata
    21301 actggactcg ggtgaatgtt tcagccatgg ccccagttct tgccattcca acaacagcag
    21361 gaactggttc agaggtcggg cgagcttctg taattaccga tgctgaaaag caggttaaaa
    21421 aaatcatttt tcatcctaaa atgttgcctg ctatggttat tctggatcca gtgttaacag
    21481 tcggtcttcc caaatcactt actgcagcta caggtatgga tgctctttcc cattgtcttg
    21541 aagcttattg ttccaattat tatcatccta tggcagaagg tattgcgttg gaaggaataa
    21601 gattaatcaa ggagaactta attcaagctt acaaggatgg tagtgacctg gaggcaagaa
    21661 cccatatgct ggttgcttca gcaatggggg ctaccgcctt tcagcgtggt cttggagcga
    21721 tgcatgcctt ggctcatcca ttaggtgcaa tttatgatgt ccatcacggg cggcttaatg
    21781 cggttttgat gccctatgtt ttattggcta atcgtagtga aattgaaaac aagatagagc
    21841 acctggcaaa ttatttgtca atagcaaatg gatttgatgg ttttttggat tggatagagc
    21901 agatgagatt agagttagga atcgaaaata cattaagtca gttaggtatt gatcattcgc
    21961 agatagacag actggcaaaa atggccaccg aggatgcggc agcagcttcc aatcctgttc
    22021 tttttacatt agagcaatac aaagaactat tgagcaaagc cattggtgag taatcgttgt
    22081 aaaggaaaag gtgcagaaac gggttgtttg ccaggtataa atcagatgga aaggacttgt
    22141 atattgaaat taagtctaat ccagacaata aaaattttgc gataattaat taggtgaatt
    22201 aaatgaatct tggtattttg ctttgtgata aggtaagtga agtatttgtt gcggatcatg
    22261 gtcaataccc tgagatgttt gccaatctat tgcgcccggc ggattctact cttgaattga
    22321 ctgtatttga tgcagagcat ggggagctgc caacagatat ccatgccgta gacgcttatc
    22381 tgatatcagg aagtcgacat ggggtgaatg atgattatcc ctggataaga aagcttgaag
    22441 agtttgttcg tactttgcat gcttcccaaa aaaaattaat tggtatttgc tttgggcatc
    22501 aattaatagc gaaagcctta ggtggaaaag tgattaaatc tcccaagggt tggggggtag
    22561 gtatgtcaca aaatcaaatt taccaattca aagaatggat gagaccatct ctaaattgct
    22621 tcaacttgct ggttagccat caagatcagg tgattgagtt accaaccggt gcggagatat
    22681 tggcagggag tgatttttgt ccaaattata tgatgcaaat tggttctttc tttagtgtgc
    22741 aggggcaccc tgagtttact aaatcttatt ctcgtgattt gatggtgtct cgcgaggatt
    22801 cggtcaatga aattgaattt gcaaaaggga tgaaatctct tgagttacat gaggatgaca
    22861 caattattgc ccagtggata gttaattttt taaaagcctg atgagctgtt tttaattgat
    22921 tattataccc ccttagagta caatatgtga acattaattt tattcactga ccagaactat
    22981 cgggagtatg tatggcgaag acaattaagg ctactggaga tggcgcttgt ctgtttaatg
    23041 cagtgtcaat cggactgagt gtcgagatct tgagcggaag actggattcg cagctggata
    23101 cacccggtta tcaggccttg ctggatgaat ttgccaaaca tcacccgcaa tttaacccca
    23161 aaagctggaa aactttaaaa gagtggctag cctattacaa cgataccaga gacattgagc
    23221 tgattttagc acccgtatta tttaatttga atcagaaata tcaagatcat ctggatgaag
    23281 aaattctcaa tgaattaacc aatcttgtat ggaaaaataa ggccaatatt gaaaatggcc
    23341 aagcctggtt tcaattgcaa aacacagggg atttgggcga ggcacttttt cccaaattgg
    23401 aaaatctgga tttgaaaaaa gacagggctc ctttattaga taaattacga gaaattctta
    23461 aagactacaa acttgaactg acacgtgaaa atgtaaaaca atttctgacc gaaaaggcta
    23521 aagaattatt atccgcttta aagaaaaaga tcagttcaga tcctcatgcc tttcaaaggg
    23581 gttatagctg tgatgagtta aagggtatga cagatgcctt agcgatcagt ctggttgaga
    23641 atagagaaga ggacattacg gacaaccgaa tcaaaatcag attagagaac caggaagagc
    23701 attggaatgt attgtgtaat gaagaagata gcgagcgttt tctggattcg acaccctcac
    23761 gtttgaaaat gacttccttg gaggcttatc gaggtgataa acaagttagt gcaccaacat
    23821 ctgagcagtt ggatttgatt gaagagcctg gcgttttttt aagagaaaga accattgata
    23881 accctggcct tggcaattgc gctttttatg cctttgcgat aggtttggtg aatataattc
    23941 aggaagaggc aaagtataat agaagaacca tgtttgatcg atgggtaggt ctcgacaggt
    24001 caatttcagg tcaatacgat gagattttga aacttaatct cgaagatccc gataaagaat
    24061 tactggacag gttgcaaagc tccttaagaa tagtgactta tcaatatcaa atacgagaat
    24121 taagaaatgt ctgtgtattc agaaatggaa attataatcg attaactgga aacagtaatt
    24181 ttgttaattt tgcagcctta tattatggcg atcctctgga tacagattct cgattcaatc
    24241 cttttgccga ttctgttcct atactgatta aaatggcaaa cattgatcga gacagtgttc
    24301 atccaggaca tgaaaacgat gtattggttc ctctcttttt agatttatta tatggtgaca
    24361 ctacgaatcc agctgatatc accctggaaa cagaaccaaa gagtgattca cctatcatta
    24421 ctgcgatgaa taacatcact caggattttt tctggggcac ccatttggat ttaaattatt
    24481 tagccgaagc gtttgaggta aatcttcatg tgctaaggaa taatagtcca attcaagagt
    24541 ttgtcgatat tcccgagcga cacactctta ctttaactaa tagcaataat acccattgga
    24601 ctacccaaat tacaacggcg agagccacta caggaatgct tttggggcga aaccctcacc
    24661 tgagtggagc taaaagaacc ggggagcaac agcgagttaa cgaggggttt cctggaaaag
    24721 aatcagccaa cgattttatg atacctcctt ttgatgaaat atctaacccc catcataaga
    24781 aagaggtaga gaccaataaa ccaatcggta aagggttttt ccatgataga ccggtagtta
    24841 gtgaagagca gagaaaattg gagcaattaa aacgaattgt tgccaatgct acgctcgctt
    24901 acactaccta cagtgaaagc atctggtttt gcttctttca ttatcatggt caaacaggcc
    24961 gagatcgggc taataacttc tgcaaaacat tttctaaaat aacagattat ggccaagcca
    25021 aagaagcttt ggttcattat ttaaatgaca gcaggaatgg aaatacacat ccacattcct
    25081 acagaacaat gttactgcat gaattacaag ggaatcatga caataaaaaa gatttgcaat
    25141 atttgtccag gcattttact tcttctttaa ataaactagc atctgtttta gaagtgcaat
    25201 tgtttgccaa cagatatgtt ccttaggtaa ctgttcatgg ggtatgtgat taaggaatat
    25261 taggtcctat gtctttcccg cgaaggcggg aatctatcca taaagctagc acaagggttg
    25321 atttttagtt agcttcccgc cttcgcggga aagacaactc aaataaatag gcttataaac
    25381 agaaaaattt gcataccccg tgtaaaggtt acttccttag taagagcgtg gtgtaaaagg
    25441 catcctagag ccctttgcac ccgcataagt ccctaaagta tattattttt taattgagga
    25501 cgtcgatttt ttactaatta aagcgatgat gggcggtaaa attgaaatcg ctatgacccc
    25561 atagataacc aatgagaaat tctcttttat taatgggatt gagcctaaat aatatcccag
    25621 gctaagaaga cttccaatcc aaagtatggc gctgatcaga ttgaaaagcg tgaaatgcaa
    25681 tgatcgcatc ctgccaatac ctgcaataaa tggagcaaag gtgcgtatta tgggaataaa
    25741 acgcgccagt attattgttt tgccgccatg cttctcataa aaagcatggg tatcatgcag
    25801 atgcttggga ttcagtaacc aggagcgttt agcgctaaag acacgagggc ctattgcacg
    25861 ccctacaagg aaattcactt gattccctaa tatcgaagcc atgaaaagca aaacaaacaa
    25921 cagcatgata ttcatagggt ttcctggttg agctgctata cttcctgcag caaataacag
    25981 ggagtctcct ggtaagaaag gagtgacgat aaggcctgtc tcacaaaaga tgacagcaaa
    26041 taacgcaaga taagtccaaa acccatatgt tgatacaaag gcatttaaat aaacatcgat
    26101 atgaagaatg tagtcaatca ggtgctgtat gttttgcata gtgtctcttt ggattaaatg
    26161 tatgacgtga attccagggt atctatactg acgtgagtta tggataaaat cagctgttat
    26221 ctcaaaccac tcgggcatct cctcagcctg aacggctccc tgggtatcga ctggttctta
    26281 tataatcttt attcatcact cacgttactc taaagaaaca aaaggatacc cattttgaaa
    26341 atatagagtt tatgaaaaat tttgatcttt ttaactcgac ctcgaaattt atacccgtga
    26401 aagcttactt tttcatcagc ccaaaatatt attgttttta ttacctttta aaaagcttac
    26461 taaattctac acgacttaca taaaatcccc aattttctta aaagaaaatg aaattttctg
    26521 gcaaatatgg attattgatt atacacttta tgtaatattt gttcttatag attaagcaaa
    26581 taatgaatca ataagagggg acgttatgaa gaaatggaat agctttcttt tgttaattta
    26641 tttgtcttta tttataggcc atgcccatgc aattacttct ttgttaacta acacttcctt
    26701 gttgactaat tttgcgcaat tagttaaagc agttgaacaa ggtgatgatg tcaaggccat
    26761 tatacgattg gatcgatgcc aaattacaga tcctgcactg caaactcaat tagtacaaaa
    26821 tttggatggc gcttcaacaa gattcaattt tacagagtat ttgcattttc gaaccagaat
    26881 taatgatcaa ttacgagata cggtaactac tgtctcaagc aagatatttg aatattcgcc
    26941 gggtgtattt ttatctgttt caagtcgttt gaatgtcttt gaagataata ctgccacctt
    27001 gcgtgtgaat ttctataatc ccgccttagg tacaagcgta ttaattatcg attggctttg
    27061 tgatatcagt aatggcaatg atgaaaatgg gttgtttcta tacaatagtc cttaagctct
    27121 cgaggtataa agtttacttc tttcatttgg ctcatttctt aatgactgtt cagatccagt
    27181 ctaagatgat ctggacttat ccaataataa tgatgcatca agcaaacctg aagcaatcaa
    27241 ttctgcaatt ttatttttca aaatctcttc aaattgttgt aat
//
LOCUS       DACVWI010000022        26507 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.022, whole genome shotgun sequence.
ACCESSION   DACVWI010000022 DACVWI010000000
VERSION     DACVWI010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 26507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26507
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.022"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            38..487
                     /locus_tag="JBH85_03470"
     CDS             38..487
                     /locus_tag="JBH85_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HAU0945250.1"
                     /translation="MNKIQRISSVFKTIFIISFLLLAGGFVVSWLAVCMGITQLDKPW
                     TNFSMALISTLANLLILFFLIRLFDSYKKNSFFTLSNVKFIRNIGYILLAEQILIPLC
                     KYITSSFTWIGISIDSIEMIFLAFLIIINSWIMMEAYRIREEQQLTV"
     gene            497..712
                     /locus_tag="JBH85_03475"
     CDS             497..712
                     /locus_tag="JBH85_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003633556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0945251.1"
                     /translation="MSIVINLDVMLAKRKIRSKELAEFIGITEQNLSLLKTGKAKAIR
                     FSTLNAICKYLSCEPGDILAFRDEKNE"
     gene            761..1204
                     /locus_tag="JBH85_03480"
     CDS             761..1204
                     /locus_tag="JBH85_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945252.1"
                     /translation="MKINYLIPGLLFSCLSHADISVLNAENSSNDHQSYVRISLNNQA
                     NMEITTDSNLIPEEARFIPAYGSVVFSVPTPNDTGIQHFRYINGNSGCDFYLDTKRSM
                     KSTGPFDTITFITGVPINSTSGCYVETIYGVNHLAVNFSENNRNR"
     gene            complement(1387..1608)
                     /locus_tag="JBH85_03485"
     CDS             complement(1387..1608)
                     /locus_tag="JBH85_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003636568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945253.1"
                     /translation="MQVGLHHWFKNDGNFKANPAVEKYCHQLIIQMNALIKNMSIELL
                     KLDREDFEKLQQAAAIKYSELKNSAHENL"
     gene            complement(1727..4675)
                     /locus_tag="JBH85_03490"
     CDS             complement(1727..4675)
                     /locus_tag="JBH85_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010654207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative relaxase"
                     /protein_id="HAU0945254.1"
                     /translation="MLSVEPLKSAQGAADYYSKAFNYYSGDATAMQWLGQGSQKLKLS
                     GVVQKEQMLALLEGRLPDGQVLQNLEGEHRPGFDMTFSAPKSVSVLVGLGLAPELVRF
                     HDEAVQLTIRQIEKEFAETRVSRRGEISFEKTNNLLVAAFRQPSSRANDPALHTHCVT
                     MNITFHEGKARSLSSDPSREHGVIEQIQNNAHYCGLIYRQHLANKLKETGFHLRLTGK
                     GLFEIDGVPDEVLHEFSTRRMDILGYMDEKGWNGAKSASTATVLTRKNKEEHDINLLT
                     EDWKQRAKDIGFDAQAFMQHRDKSQSISWLSGVKDRLLALVNKYKKDSSPSEIEAAHA
                     CVVVAIETLSQRTSIFSERMLTQEAMKHSLIYPKAVSRQSIIESIQQEIKSQTLYEAR
                     CFDRGERLLTTPWLLTLETETIARIDRNKGAVPAIAHLNAVTAFQKMRSSLLPYPMTN
                     SQKESMKVLLTSKDRYLAIQGYAGVAKTSMLSEARIFIEAQGHKLRGITVASSAAHEL
                     QEKAGIKADVFPLVHQELKEAQTASLTKTLFIIDEASMLSSHQGHELMKQIERVGARL
                     VLVGDRAQLPSVNAGRIFGLTQEYGIETAVMDEVVRQKNEILRQAVIATTKGFVQEAL
                     DNLDVKTLATHKERIAWIANHWLSLSASARDETLLFAPTHANREEITTFIRSGLKQEG
                     TLKGEQFSQIILKTKMMEPIQSRFVAYYQKGDMVRFNQSFKRNKIHAGSYYTVGEISK
                     KHRQDNVLPLIDESGNLIKFNLNNLPNYKTHTAPFERTIEVYETKSLELLVGDKVMWT
                     RNFKANDIRNGQCATLHEIKNNSFMFITKEGRLLTLEKSHPALKHLDYSYVLTNYKVQ
                     GKDAPYGIGLMESFHRFGSTLNNFYVQISRAIHGMTLVTDNKEELVHAIRRNSNEKPA
                     SMDITSSAQLIHHERRFGAQNQLSIQSVIDKKKSLEIQEISKSMNQDDLIIEKKGPHL
                     TKQLSKELEL"
     gene            complement(4690..6525)
                     /gene="traD"
                     /locus_tag="JBH85_03495"
     CDS             complement(4690..6525)
                     /gene="traD"
                     /locus_tag="JBH85_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012979151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HAU0945255.1"
                     /translation="MREEPNFKHYTRGGQISFHNLRMWDQITKTLVWVCLFLWVVLTG
                     LITWLVISPEKFHQAIAYYYASFLNLVGQKHTFTLPFHGKNYQQNVETILHYPYYKEN
                     ADHMVDLLGKSSLAAFVFSFVLGLCFAFYFIHRGKAQRANQFIRGSRIDTKENVIQQI
                     LDKKENSDITIDGFPLKANSEVQHLLVHGTVGTGKSQLIMKIMDALRKRGDRVIVYDK
                     GCAFIPHYFDSNQDVILNPFDARCPNWDMWLEAPRDSDFENMAESLIPMHGDSEPFWV
                     NAARTVFSSVAAKMRKDKDRSVEKLLKLLLTGEFSHLEDYLKGTAAATLVSGKIEKTA
                     ISIRSVITTYLKSLSTLSGLDSEGASPFSIRDYILNEQHSGWLFISSNGEQHKSLKPL
                     MSMWLAMASLTLLSLTPNPDRRIWFICDELPSLHKLPLLGETIAEVRKFGGCFLLGMQ
                     SFSQLTKVYGQSGGAKELFDLLNTRFFFRSPSADMARLVASELGEEEIEESRENYSYG
                     ANSIRDGISLGSQRVTRPIVSYPQILELEDLRCFVRLPGSYPITQLTLELENRPKYLK
                     GFVERQFIIDEMLQKLVKETESTEDEAIAKRKCHNKKSVEIEFEV"
     gene            complement(6617..7204)
                     /locus_tag="JBH85_03500"
     CDS             complement(6617..7204)
                     /locus_tag="JBH85_03500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945256.1"
                     /translation="MDPKQLKQAIAEDMKTIKMLNPEIIPARFYYGGLLKGVFNGVWR
                     MSIILFLTLCYVMSDDKEPISFSSLFIDSGITALFLSIVAMLILLTPISFFVQFQFHL
                     EKKLKTSALIRKKCNHISMVFFGMFAFLCILFGSYASGQQIFFMLVVSFFLSLGATHI
                     AVHMELSRIGFSSLFTLCNEFFSKGKTVSIEEAQK"
     gene            complement(7206..10013)
                     /gene="traG"
                     /locus_tag="JBH85_03505"
     CDS             complement(7206..10013)
                     /gene="traG"
                     /locus_tag="JBH85_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010654209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer mating pair stabilization
                     protein TraG"
                     /protein_id="HAU0945257.1"
                     /translation="MITIHVLAGGELFQHVLNAISAFMKQDSFLGLLRITALIGIVMA
                     TIGFIKTRDPMAFARWFLGYVLFVNLVILPKTSVMIDDISSQTPKLVDNVPVVFALSS
                     SLVTTIGYGLAQSYDALLTMPNDLQYTKTGALFGSRLVSASTSFRIKDPVLKEEMNEY
                     FRICVVGDIRLNRKYSVSDLAHSTDIWNLITVKASPLRMLSVNGKLVSCLEASKPDGQ
                     YSLRKKLDAEIKKAYTFFGVNLFGKPKNTTYEALFATHLKSAFEYYQGLTDSSSNIFL
                     QSMMINAIGDGVAHYQAFTDATAGIVNQQFTKSQVQHRWSWEVLGQKALWILPITHTC
                     LTLILFGVFPLIIALTTLPGGIRILYGYMQFFMSLQFWPVLFAILNAGMTIYGASSSG
                     EYGQFTMVNLDKIDELHADISGACGYLMMLIPFLSHGLVSNLGGAFSNLATSMMSHMQ
                     GSSMSVAAEAASASFGLGQTSFYNTTANNFSANKHDSNWTHLHGMRTSQLGSGVLKTI
                     TGSGDRVFDVSPGMTRSAVSINALEGLSASLNQAYEQSTQAARNESAHYQNSLSNFAH
                     RALQLSQLAGHDMRLGDSISESETGQYSKALSTISHIAEDVARRLGVSKEDALTHLTS
                     GGLSAQVGFKSQGSIWGKLAQWGTGFHASADAHLKFDRNSTSQDKYHTGMDGSLSSRE
                     SRDFNDAISYVKQFSQNHHFDDSHSQAASLSNQLGADLREAETASRNVDASLAKATRI
                     QNAKNFVESHSSQITTDLNQAFQAYVAARLNESERDELYSHPGDLRALNKLQALGHDF
                     IASKRDELIAQFGNTEHKSQIESFYQKEKSGFIAKENQLGSHYQKNSEEFLHQAQSMK
                     VGINDKELGVFHQEVHQQKSTLPQNLKQGEQLIKSGSRDLMNEKDLRLQEGMMNAQKN
                     VVVPENMHLPFEDKKLHKKGE"
     gene            complement(10025..11389)
                     /locus_tag="JBH85_03510"
     CDS             complement(10025..11389)
                     /locus_tag="JBH85_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraH"
                     /protein_id="HAU0945258.1"
                     /translation="MKKAVITLFLWAFFPVVQANVSQDLDNFFNGMGYASNVTSPDAF
                     ESQAAGFFGGGSLYARNQVRQYQLVQLDLPSYRAGCGGIDLYTGSMSFLSEQKLVDLG
                     KSVMTNAGAYAVDVMLASTVPELKQVRDYLQQLEQMANQASINSCQLSQNMVGGIWPK
                     TAESQQKICKDQAAMGKEGLFSDYVKARMVCAGTGFDNVMSKASQDPERKKQVVLNKN
                     LVWSLLQAKSFLNSDRELAEMVMSLTGTLIIDKEGKVTNVPSLAGNADLVNALIGTGN
                     GPRSAKIWRCKDAGSNSQCMQVSLQDITIQETSTLTYKVREIIRTINTKLINDEKPGN
                     RELNFLSMTSLPVMKFLSVLNSMHYGSSAVDIEEYSMLIAQDLLTNYLIELLREVSVA
                     TAGSELNTDLVKEIQKRINEATTHVESLDPKVGRKLQEKLNLIERMAQIEKQVSSQMN
                     STAG"
     gene            complement(11389..11895)
                     /gene="trbB"
                     /locus_tag="JBH85_03515"
     CDS             complement(11389..11895)
                     /gene="trbB"
                     /locus_tag="JBH85_03515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly thiol-disulfide isomerase TrbB"
                     /protein_id="HAU0945259.1"
                     /translation="MFARVFLIVMFAFIGLGAKAEGSQWLTNLIAEQEGLVTHQREEP
                     QNTKRKGFFSTHGLILFYGSQCPHCKRFAPILKGWANRNKAEVLPLSLDNQPLPEFPK
                     FLPATTEWINAAFGGNSINYPALFVVNPKTKTLYPVGFGSMTNAELNDRMAVLISKIK
                     AYEIKGRL"
     gene            complement(11895..12635)
                     /gene="traF"
                     /locus_tag="JBH85_03520"
     CDS             complement(11895..12635)
                     /gene="traF"
                     /locus_tag="JBH85_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly protein TraF"
                     /protein_id="HAU0945260.1"
                     /translation="MINRMLIVFLLLSGVAFADKPVGFLWYTKERETKRVEKKTSGIP
                     FKSLSYTERDAVLRFYTMEALHKARYTKKMEDMRVFLSLQDYWLKESSRFKSLFQKTM
                     LAHPEYDYAVTHPTSNLGAKITDEVRESQTIEVINRLSKSHGLLFFYRGKSPYDLKQI
                     PIIVDFCKRFRIQLIPVSVDGATSPELLNSRMDQGQANRLGVRYFPALLLVNPASQQV
                     SPVAYGLTTQDVLMERIKQVVNQFKGEE"
     gene            complement(12628..14319)
                     /gene="traN"
                     /locus_tag="JBH85_03525"
     CDS             complement(12628..14319)
                     /gene="traN"
                     /locus_tag="JBH85_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010654213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system mating-pair
                     stabilization protein TraN"
                     /protein_id="HAU0945261.1"
                     /translation="MSKVGLIFFCILSFSSFSQNQVDALHARDEALQNLKGFNPATAL
                     KGYTINPQETSLQPQEGSNPFASLGLNALKNNSTAHEVYNKALNRSRVRANPNTPEMQ
                     YAETILGDPDGVLEGTCYKEASHCKIESTVKSCEESLQYSMVSCKEMTLSVTVKSLSM
                     SFSRTVVPQRYKSVTTFDLTACSPADRQCSPANTVILTQPCEEISVHVTHHGQPLRVT
                     KQPTCTDTTVTVQLSGNGRLSVPLQVTVTEYVSDDQWQTQVCEPIQSENLNGYCFLEE
                     SQACLEPNQVKVIGGVAIKRPCWGRALQYQCGSVQSTTCTEYINQGCSQTASTCVKSK
                     ANRCERYSQTFQCMQQFCMPEKTACPGKMYCIDGQCDTSRDETSDDMAEGISRLGLLA
                     GVAGDVTANQVRSGTPAIFNGSAQECKKYPLGFRDCCTDSGWGDWVKHCPEALQVLQR
                     AKHENRVVYLGSYKNHKLGARHYTFCIFPTKLASIVQIQGRGGQLGIPYGTAQYPDCR
                     GLTPEELERINFASLDLSPIQEELVARMVLPKNDSLKQTNQSHIERLKQQGRAHD"
     gene            complement(14312..14734)
                     /gene="trbC"
                     /locus_tag="JBH85_03530"
     CDS             complement(14312..14734)
                     /gene="trbC"
                     /locus_tag="JBH85_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010654214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly protein TrbC"
                     /protein_id="HAU0945262.1"
                     /translation="MLRKGILVLIGSVIMTSSFAAQISVLVSFSIPETLLQETLKESA
                     QLNIPAYLNGLYRDSMSETALKVMALSKHIPNLNLAIDPTLFERFGIQQVPAVIVDDG
                     QTFDVIYGHLSIQEGLARMAGRGDVDFTPRDIRRVIGE"
     gene            complement(14748..15731)
                     /gene="traU"
                     /locus_tag="JBH85_03535"
     CDS             complement(14748..15731)
                     /gene="traU"
                     /locus_tag="JBH85_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus assembly protein TraU"
                     /protein_id="HAU0945263.1"
                     /translation="MYFRVLLLTVLYLVSYQSSAKLCTGHFVNPITDVCWRCLFPLSI
                     GNAKVVNSSLPDTENASSPIGVCPASTGVRLGLNIGFWEPMALTDVTDTPYCLVNLGG
                     TQLNLGLKQGRGGRHVVGNGQQRAFFHVHWYKYPLINWLNLITSSGCLQKGDFDIAYL
                     TELDPTWSDSEMSFVLSPESVLFGNPVAASACAADALSSTIASKPLDSLFWCAGSQGT
                     HYPMTGHVNASVSPVQTAWLLTERMNYKMHREFLVSDSSPKSDAICKEHYYTVTPKSR
                     YRYELVNQVADGKRCYPGGSSTLAWEAGKIKPHTPDQYGFLVWRKRNCTFL"
     gene            complement(15721..16356)
                     /gene="traW"
                     /locus_tag="JBH85_03540"
     CDS             complement(15721..16356)
                     /gene="traW"
                     /locus_tag="JBH85_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system protein TraW"
                     /protein_id="HAU0945264.1"
                     /translation="MNIIFYLFLLMISMGQVHAKSFGVVGEVFPIAEKSFLRLIEERL
                     ASLKASGELKSLNQRWIQTAAEHANRPPALNIVRTHHSIKHEYVPEITLSQDITNEKG
                     QILYSKGTHVNALQHMPSYTPCWLFFNADDDAQLNWADHQKTQCANPKLILTGGAVNK
                     AEKRLDSVIYFDQAGKITSKLHIGHVPAKVIRHQNSLVIHEQAIKENGDVL"
     gene            complement(16353..16688)
                     /gene="trbI"
                     /locus_tag="JBH85_03545"
     CDS             complement(16353..16688)
                     /gene="trbI"
                     /locus_tag="JBH85_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system protein TrbI"
                     /protein_id="HAU0945265.1"
                     /translation="MRLTPLFLGCALAVFGVVLGFYGVSPQKSIVIFDKKEVLSQFIR
                     QLAEAKATESQVEQSTRRFNALLNKVLVDTAQQKKVIILRASDVLAGGVDITDEMRIK
                     MSHAMRNKL"
     gene            complement(16679..19276)
                     /gene="traC"
                     /locus_tag="JBH85_03550"
     CDS             complement(16679..19276)
                     /gene="traC"
                     /locus_tag="JBH85_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein TraC"
                     /protein_id="HAU0945266.1"
                     /translation="MGVNFSLWRDKARDLLHRTSHLLGETSGVKPDSLCSYDKAYESC
                     TLDLPSIKSLLPYETVNEAGFFVNRNSMGFGLLLMPMSGADESLMNSLSQLFKNKLTV
                     GTDCTVLLYKHPWIGEQLAQNYEPILKQGGIYAELARETLKYHLNAIKKGYKNGRNVP
                     AGLSDYCGYLFVSRPMQSDVEGQLQLLLADFESELKVAGFGIRRCGEDEFKVLMRALI
                     SPDFNELSWPIINESDGFIAEAIPCPSTVIEIGDEAIEVSITDSQAQTVRTRLVNCEV
                     SHYPAKPFALWQTPDLFANLLDTEQGIQCPFLISFTIRGMNQEKMKAKARARAKSLNA
                     NNNPVQSFINPSIREEAAEWQFVHDHASKGELHLLPTFYNVILYTTSDHEREHVAKAI
                     ASFRQMGFTLTQSRCKQWLRFLGSLPFICTSGLFSSLELLGMTKKLSHANVANLLPVI
                     ADFKGARQGLIVPTYRHQLFYLNTFDDRVLPITNFNRLTVASTGAGKSFFEQAQILDG
                     LSRGQQIFVIDLGGSYKHLCEMVGGSYIDASTLTLNPFTLFDFDGVTEIKGEQVNDYI
                     QIRDLLAIMASPSEALGEVQKAWLLDAVTECWKARGRHAKMDDVLTSLQRMLEKPQSQ
                     GDQRLKDLLILMSKYGSQGIYGHLFNSDTPLLNGSNLVVLEMGELESNPELLTIVMFV
                     MIVIIQGQFYHSDRRREKRCIIDEAWRFLARGSNPVCASFIEQGFRTARKHMGGFAVI
                     TQNLLDTMNTIQGRAIAASSDTKIIMRQGSFKQYLEEHPKHFSPLEARVIESFGEAKT
                     QGFSNLMIQFGNVTTFHRYFCDPFSRVLFSTSGDEVSLIESLTKQGVSLSEAIKRVAN
                     KYYREELCD"
     gene            complement(19267..19557)
                     /locus_tag="JBH85_03555"
     CDS             complement(19267..19557)
                     /locus_tag="JBH85_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019350379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraV family lipoprotein"
                     /protein_id="HAU0945267.1"
                     /translation="MRHSIVVLMPIISVLLTGCGPMNSNFSCNATAGDSCLTIEQVDA
                     MTRFADDIKPTKQSLGMMKAENNIPNRQGKIIKQNNGQSLWVARNMEEKSWA"
     gene            complement(19554..20927)
                     /locus_tag="JBH85_03560"
     CDS             complement(19554..20927)
                     /locus_tag="JBH85_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraB"
                     /protein_id="HAU0945268.1"
                     /translation="MANWQWNKMVKGRQVRTLIVVGCGLFFLFAMMIVLLADDRPKKN
                     LEAKKSVNLTGIIEESFTDAVADNALTAQQTELESLKKQVSELTLNIKSMAEAHQKEL
                     QAQKEELTSQVQELVLANQEKQSNSEQQDNPSELKEVQNPQLWHNPNVYSMNNTMNRG
                     TVLSDAIPRIHTVSFRPKRHITKKHHNFYLNPAHYVPSNTSVRAVILGGADADASVNG
                     QSKNNGVMLFKFLEDGTLPNGQRSRLRGCRVSANSYGDISSERAFATLYRLSCAHPGE
                     PIIDKEVTGWVFFNGKVGIKGKPLMRDNKVMTWAGVSGALSGIASAAQYAQSVQAIGP
                     YGATSVVPSSQIAPFAAYGGASKAADTLSQYYVKRAEQYHPVIQVGSGNVVTIVFKDG
                     FYLEPDEDKSQHAMQRYKAQEETQELISRGEEEKNSEMNFTVPPEVLGKINRVNTLSR
                     NETGGLQ"
     gene            complement(20920..21636)
                     /gene="traK"
                     /locus_tag="JBH85_03565"
     CDS             complement(20920..21636)
                     /gene="traK"
                     /locus_tag="JBH85_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system secretin
                     TraK"
                     /protein_id="HAU0945269.1"
                     /translation="MHKPFSIALALLSTVAMGANSIPVKDNSDIALTLSQGNYNRLVV
                     KNDKIMEAVFPPNAMAIKRDEQDGSVYVMLAAANPFTLFLTTESGRHFSVTVNGEESL
                     GKTIELVPVLPVVAASKTHAPITNPKKITQEAVPEAIIAMLTHMEQQKPFADVKVRRQ
                     FGRAEHWSKGLTLLPKESWDSKLLKGETIELYNGGKEPLELAQDWFAKEGTLAIKFSK
                     PSIKPGERAMLYRVEASHHG"
     gene            complement(21629..22198)
                     /gene="traE"
                     /locus_tag="JBH85_03570"
     CDS             complement(21629..22198)
                     /gene="traE"
                     /locus_tag="JBH85_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraE"
                     /protein_id="HAU0945270.1"
                     /translation="MDFKSYQSRLSQLSARFNLMVVLVFGLLISNVLLSCFLFKAWNQ
                     HTIEVTPFSGAPSYLKSASSVDGHYLSLMAENFVNERLSVTPETVDASHQRLLSYVGH
                     QNYNQMLRLLTNEAKVIKDKKMSSIFYIDKNKANPHELTVVVSGILKRFVGLQAVNDE
                     RKTYVLQFQYKDSRLSIVQFAPLKEKQDA"
     gene            complement(22208..22504)
                     /gene="traL"
                     /locus_tag="JBH85_03575"
     CDS             complement(22208..22504)
                     /gene="traL"
                     /locus_tag="JBH85_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraL"
                     /protein_id="HAU0945271.1"
                     /translation="MSNMNYQFLNHIDAPKRVLTLTMDELVVTALSFILLILSNQKVL
                     VSMLGLGLLSGLRHLKKGEGPKVLLVLAYWYLPSYITQFFLPKLPLSHHRVYVA"
     gene            complement(22517..22804)
                     /locus_tag="JBH85_03580"
     CDS             complement(22517..22804)
                     /locus_tag="JBH85_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945272.1"
                     /translation="MKMGKKIVSLMQKAGSAFMFAMLSKSVFANDLLARALEGDVKDS
                     LGSGSMFWKIFILVDIILATAMAVKSKNPMVFIGVTAVAFIPAFLLKTFVF"
     gene            complement(22924..23670)
                     /locus_tag="JBH85_03585"
     CDS             complement(22924..23670)
                     /locus_tag="JBH85_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraT"
                     /protein_id="HAU0945273.1"
                     /translation="MIETMKSGLTKTLLASVVIVLTGCAATHTAIEHGSLQVSTKQSE
                     TIFLDPVPNTQKTVYVSVKNTSDEDVDIAPQLKTVLSAHGYKVVNSPSSAHYLLQANV
                     LKVGKMSVAASQSALGGGYGSAIAGAAAGSAAGSLTQSSTGMIVGGLAGGVIGMATDS
                     LVKDVNYTMITDVQISERVGKGIKINEQFQSHLKNGSSTVTSQTSSRDSQYQRYRTRV
                     VSNADKVNLKFQEARPSLEQGLVKVISGIF"
     gene            complement(23804..23962)
                     /locus_tag="JBH85_03590"
     CDS             complement(23804..23962)
                     /locus_tag="JBH85_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator"
                     /protein_id="HAU0945274.1"
                     /translation="MLILKRRVGETVAIENKVFCMVLDHQRDGQLKLAFDAPECVPFH
                     RFEIQEGS"
     gene            complement(24019..24204)
                     /locus_tag="JBH85_03595"
     CDS             complement(24019..24204)
                     /locus_tag="JBH85_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004450445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945275.1"
                     /translation="MNAEQEVFDILEGCILCLQKAATEIGGFDFDKHAQAAVFAYSLL
                     KRQQLFLIYPFENETVH"
     gene            complement(24317..25351)
                     /locus_tag="JBH85_03600"
     CDS             complement(24317..25351)
                     /locus_tag="JBH85_03600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013347307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HAU0945276.1"
                     /translation="MYETVVFLETSLSHQEAMHLLPDAKYLPSIKKGDVLKSINDGYK
                     RIVIIDGNFSCVPSVWHKEILTALDYGLEVFGAASMGALRAAELDAFGMKGYGRIYEM
                     YKNEEIDGDDEVAIAYSKYNNEQTIPLINIRLTLERINITNKETILDSIRSIFYAERT
                     WGRIAQQVSEELYHLIKSNYADVKKEDAKSLLFYLNHQQILPMTLAFGKKKRNFTLFE
                     KKLIEATLSPVWLNSHELEQIGEVAHLQRAENIVKLLSIPKTKANMLHYQSIIAMLDK
                     QEYEITECELIYQVELFREERNLLKGDEFVNWLKDRGLYDSNLEQLFYDYVKLSKYFA
                     ITYDYNSYFN"
     gene            complement(25344..26405)
                     /locus_tag="JBH85_03605"
     CDS             complement(25344..26405)
                     /locus_tag="JBH85_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945277.1"
                     /translation="MIIRHAETSFRARHFSETLNLLNQFKKLAGITRLADLTHLDYTS
                     LPVYTAIRPRAKSLTTSQGKGLTKEAAKCSALMESIEVYFAEEIIPQVTNKSELELTQ
                     SNNLFIPINQLANSVRFTNPSQPINWVYADLVFSGKTILVPFAEYSLNSYLPEVLIYS
                     PDTTGLAGGNNYKEALLHGILEVIERQDAQQITEIAFVNSNLVENLSIRFDCFITYQE
                     NYYRVPSFEVLLKSKNPFENQILFKGSGSHLNKKIALNRALTEAIQSRVTTIAGSRDD
                     LINTKYDSKASEFPVVMNKKNFDEVQDYSVGTIEDALSVLYEKIKENNQDILVYTYYD
                     KEICIVKVKLISMDLISHV"
     gene            complement(26402..>26507)
                     /locus_tag="JBH85_03610"
     CDS             complement(26402..>26507)
                     /locus_tag="JBH85_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HAU0945278.1"
                     /translation="LVFYCASGYRSKLFASELRTLGVDAYYLKTSLSK"
BASE COUNT         7703 a         5730 c         4937 g         8137 t
ORIGIN      
        1 cctccgctaa caacctagat gttcggagta gttatttatg aataaaattc aacgcataag
       61 ttcagttttc aaaactattt ttataatcag ttttttgtta ctagctggag gatttgtcgt
      121 tagttggtta gccgtttgca tgggcattac tcaattagat aagccttgga ctaatttttc
      181 tatggcgtta atttccactt tggcaaattt attgatttta ttttttctta ttcggttatt
      241 tgattcatat aagaaaaaca gtttttttac cctttctaac gtgaagttta ttcgcaatat
      301 tggctacatt ttgttagccg agcaaatact tattccttta tgtaaatata ttacttcttc
      361 ttttacatgg attggaatta gtatcgacag cattgaaatg atcttcttag cgttcttaat
      421 tataattaac tcttggatta tgatggaagc ctatcgaatt cgagaagaac aacaacttac
      481 tgtatgatta aaaagtatgt caatcgttat caatttagat gtgatgcttg ctaagcgcaa
      541 aattcgctct aaagaattag cagagtttat cggtattaca gaacaaaacc tatccttatt
      601 aaaaacaggt aaagcgaaag ccattcgttt ttcaactcta aacgcaatat gtaaatactt
      661 aagttgcgaa ccaggtgata ttttagcgtt tcgagatgaa aaaaatgaat gaattttatg
      721 ctggtaaatt tagaaactaa actaacttag gaagtatatt atgaaaatta actacttaat
      781 tccaggacta ctattttcat gtttaagtca cgcagatatt tccgtgttaa atgctgaaaa
      841 ttcaagcaat gatcatcaaa gttatgttcg cattagttta aataatcaag cgaatatgga
      901 gataacaact gattcaaatt taattccaga agaggcccgg tttataccag catatggctc
      961 agtcgtattt agtgttccaa cacctaatga tacaggtata cagcactttc gttacattaa
     1021 tggtaattct ggttgtgatt tttatcttga taccaaacgt agtatgaaat caacaggccc
     1081 ctttgacaca attactttta taaccggtgt tccaataaat agcacaagtg ggtgttatgt
     1141 tgaaacaatt tatggcgtga atcacttagc agttaatttt tcagagaaca ataggaatag
     1201 atgatccgag aattacacct ctaggatgaa aacatattaa ttttctgggc aacttttcat
     1261 ctatgttgcc taagtcgcag caaaaagaac aattaagaga gcttaatacc actgaaatac
     1321 tagaactggc ttagtgattt ttccttagag taccttttcg ttccattgct tgtcacaccc
     1381 catcttctaa agattttcat gcgcactgtt tttaagttcg ctatatttaa tagccgcagc
     1441 ctgctgtagc ttctcaaaat cctctctatc caatttcaac aactcaattg acatattttt
     1501 aataagcgca ttcatctgaa taattagttg atggcagtac ttttcgacag ctggatttgc
     1561 tttgaagttt ccgtcatttt taaaccagtg atgtaatcca acttgaatta attgattgat
     1621 catattggac atagaatcat tattttttat agctaatgct gatatgtgtt gatgcaaatt
     1681 atctggcaat gaaatggtta aacgtgacat ataaactcct cctatcttat agttctaatt
     1741 ctttacttaa ttgcttggtt aaatgaggtc ctttcttctc aataatgaga tcatcttgat
     1801 tcattgattt agatatttct tgaatttcaa gggatttttt cttatcaatt actgattgta
     1861 tggataattg attttgcgcc ccgaatcgac gctcatgatg aattaattgt gcgcttgagg
     1921 taatatccat tgaggctggt ttttcgttcg aatttcttcg aatagcatga actaattctt
     1981 ctttattatc cgttaccaaa gtcataccat gaattgctct ggaaatttgg acgtaaaaat
     2041 tgtttaaggt actgccaaat cggtgaaatg attccattaa accaatgcca tagggtgcat
     2101 ctttcccttg aaccttgtag ttagtaagaa catagctata atcaagatgt tttaaggcgg
     2161 gatgggattt ttcgagtgtt aataaacgcc cttctttcgt gataaacata aaagagttgt
     2221 tttttatttc atgaagagtc gcacattgac catttcgtat atcgttagct ttaaaatttc
     2281 gcgtccacat gaccttatca ccaaccaaaa gctccaagga ttttgtttca tatacttcaa
     2341 tggttcgttc aaaaggggct gtatgagttt tgtagtttgg cagattgttt agattaaatt
     2401 tgattaaatt accactctca tcaatcagtg gtaacacatt atcttgacga tgctttttac
     2461 taatttctcc taccgtgtaa taactaccag cgtgaatttt attcctttta aaactttggt
     2521 taaaacgcac catatcgcct ttctggtaat aggccacaaa tcggctctgg ataggttcca
     2581 tcatttttgt tttaagaata atttgactaa actgctcgcc ttttaaggtc ccctcttgtt
     2641 ttaatccact gcgaataaat gtggtaattt cttctctatt ggcgtgtgtt ggcgcaaata
     2701 gcaacgtttc atctcgcgcg gatgcggata aagaaagcca atgattggca atccaagcaa
     2761 tacgctcttt atgagtcgca agcgttttaa catccaaatt atctaatgct tcttgcacaa
     2821 aacctttcgt ggttgctatt acagcttgcc ttaagatctc gtttttttgc cgaacaactt
     2881 catccatgac agcggtttca ataccatatt cttgggttaa cccaaagatt cgccctgcat
     2941 tcacactggg tagctgagct ctatccccaa ctaatacgag ccgtgcacca acacgctcaa
     3001 tttgcttcat caactcatgg ccttggtgag aagaaagcat ggatgcttca tcgataataa
     3061 atagtgtttt agttaaggaa gctgtttgtg cttctttcaa ttcctgatgc accaagggga
     3121 atacatcagc tttaatccct gctttttctt gcaactcatg tgctgcagag cttgcaaccg
     3181 taatcccacg gagcttatgc ccttgagctt cgataaaaat tctcgcctct gaaagcatag
     3241 aagttttggc aactcctgca taaccttgaa tagccaaata tcgatctttg ctcgttaaca
     3301 acaccttcat ggattctttt tgtgaattgg tcatggggta aggtaacaaa gagctgcgca
     3361 ttttctggaa agctgtaact gcattaaggt gggcaatagc gggaactgca cctttattgc
     3421 gatcaattct ggctatagtt tctgtttcca aagttaaaag ccaaggtgtt gtgagcaagc
     3481 gttctccacg atcgaagcat cttgcttcat atagcgtttg actttttatt tcttgttgga
     3541 tagattcaat aattgattgc cttgaaaccg cttttggata aataagacta tgtttcatcg
     3601 cttcttgagt taacattctt tctgaaaaaa ttgaagttcg ctgacttaac gtttctattg
     3661 cgacgacaac acaagcgtgt gctgcttcta tctctgatgg gctagaatct tttttatatt
     3721 tgtttactaa agccaataat ctatctttaa cccctgagag ccaagaaata gattgcgatt
     3781 tatctcgatg ttgcataaac gcttgagcat caaaccctat atcttttgcg cgttgtttcc
     3841 aatcttctgt aaggagattg atatcatgtt cttctttatt cttgcgagtc agtacagtag
     3901 cagtggatgc actttttgca ccattccaac ccttctcatc catatacccc aaaatatcca
     3961 ttcgccttgt tgaaaattca tgtaaaacct catcaggaac accatcaatt tcaaacaaac
     4021 cttttcctgt taatcgcaaa tgaaagcccg tttccttaag cttattggcc aaatgttgac
     4081 gataaattaa accacaatag tgagcattat tttgaatctg ctcgattacc ccatgttctc
     4141 ttgaaggatc acttgacaat gatcgcgctt taccttcatg aaatgtaata ttcatggtga
     4201 cacagtgggt atgtaatgct ggatcattag cacgagaact tggctgtctg aatgctgcaa
     4261 ccaataagtt attggtcttc tcaaaagaaa tttcacccct acgggaaacc ctggtttctg
     4321 caaattcctt ttcaatttgt cggatagtca attgcaccgc ctcatcatga aaccgtacta
     4381 attcaggtgc taaacctaat cctactaaaa ctgacactga tttaggagca gaaaaggtca
     4441 tatcaaaacc aggccgatgt tctccttcaa gattttgtaa aacttggcca tctggcaatc
     4501 taccttctaa taaagccagc atctgttctt tttgcacaac accagagagc ttcaattttt
     4561 gactaccctg ccctagccac tgcatggctg tggcatcgcc tgaataataa ttgaatgctt
     4621 tagagtaata atcagcagca ccttgagctg atttaagcgg ttctacactg agcatgccta
     4681 ttccttattc taaacttcaa attctatttc cacggatttt ttgttatggc atttgcgctt
     4741 cgcaatagct tcatcctctg tgctctcagt ttctttaacg agcttttgta gcatttcatc
     4801 aataatgaat tggcgctcaa caaacccttt caaatattta ggccgattct caagttcaag
     4861 cgtgagttga gtaatgggat aacttcctgg aagacgcaca aaacatctta gatcttccag
     4921 ttccaaaatt tgtggatagg atacaatggg acgtgtcaca cgctggctac caagagatat
     4981 tccatctcga atactattag ctccatagga ataattttct cgtgattctt caatttcttc
     5041 ttctcccagc tcgctggcaa ccaaacgagc catatcagcg cttgggcttc taaagaaaaa
     5101 acgggtgttc agcaagtcaa acaattcctt agcaccgcct gattgaccat acactttggt
     5161 gagctgagag aaactttgca ttcctaataa aaagcaacca ccaaattttc ggacttctgc
     5221 aatggtctca cctaaaagcg gtaatttatg aagacttggc aattcatcac aaatgaacca
     5281 aatccggcga tctggattag gcgtaagact taacaatgtg agggaagcca tggctaacca
     5341 catagacatt aaaggcttta atgatttgtg ttgttcgcca ttggatgaaa taaaaagcca
     5401 accactgtgc tgttcattta aaatgtagtc acgaatagaa aatgggcttg ccccttctga
     5461 atcaagtcct gataaggtag aaagcgattt taaataagtg gtaataactg aacgaatgga
     5521 aatagccgtt ttttcaattt taccgctaac tagagttgca gcagctgttc ctttaagata
     5581 atcctctaaa tgagaaaact caccggtcaa cagcaactta agcaattttt caacggatcg
     5641 atctttatct tttcgcattt tagcagcaac cgaagaaaat acagttctcg cggcattcac
     5701 ccagaagggc tcagaatcgc catgcatcgg aataaggctt tctgccatgt tttcgaaatc
     5761 agaatcccga ggtgcttcaa gccacatatc ccaattagga cacctcgcat caaagggatt
     5821 tagaatgaca tcctgatttg aatcaaaata atgcggaata aaggcacatc ccttatcata
     5881 gacaataact ctatctcccc tcttgcgtaa ggcatccatg attttcataa tgagctgact
     5941 ttttccagta cctacagttc catgcaccaa cagatgttga acttcgctgt tcgctttgag
     6001 gggaaacccg tcaatagtga tatcagagtt ttcttttttg tccaggattt gttggattac
     6061 attttccttt gtatcaatac ggctgccacg aataaactga ttagcacgct gcgcttttcc
     6121 cctgtggata aaataaaagg caaagcaaag tcccaaaaca aatgaaaata cgaaagctgc
     6181 caatgaagat tttcctaata gatctaccat atgatcggca ttctctttgt aataaggata
     6241 atgcagaatt gtctccacgt tttgttgata gttttttccg tgaaagggaa gcgtgaaggt
     6301 atgcttttgc ccaacgagat ttaagaaact tgcatagtaa taagcaatgg cttggtggaa
     6361 tttttcggga gatataacca accaggtaat taagccggtt aatacgaccc aaagaaaaag
     6421 acaaacccat accaacgttt tagtaatttg atcccacatc cgcagattgt gaaaactgat
     6481 ttgcccgcca cgagtatagt gtttgaaatt cggctcttca cgcacaatat ttactcctta
     6541 tcctcttttt taggcaaagc agtagctacc attgcctgta aaatggttaa aatttattct
     6601 ttttgcgttt tattttttat ttctgggctt cttctattga gacagttttt cctttagaaa
     6661 agaattcatt acatagagta aataggctgc taaagccaat tcggcttaat tccatatgga
     6721 ccgcaatatg agtcgctcct aaactcagga agaatgacac taccaacata aaaaaaatct
     6781 gctgtccaga agcataactg ccaaacaaaa tacacaagaa tgcaaacatg ccaaaaaaca
     6841 ccattgaaat gtggttacat ttttttctta ttaatgcact agtctttaat tttttctcca
     6901 gatgaaactg aaattgaaca aaaaaactaa tgggagttag caagataagc atcgcaacga
     6961 tgcttaagaa tagagcggta atgcctgaat caataaacaa ggaggaaaaa gagatcggct
     7021 ccttgtcatc actcataaca tagcatagcg ttaaaaaaag gattatagac atccgccata
     7081 ccccattaaa aactcctttt aagagccctc cgtaataaaa acgggcagga ataatctctg
     7141 ggtttagcat tttaatagtt ttcatgtcct ctgctatggc ttgctttaat tgttttggat
     7201 ccactctact ctcctttttt atgtaatttc ttgtcctcaa aaggcaggtg catattctct
     7261 ggcactacta catttttttg agcattcatc atgccttctt gtaacctcaa atctttttca
     7321 ttcattagat cacggctccc tgacttaatc aattgctctc cttgttttag attttgaggc
     7381 aaagtactct tttgttgatg cacctcttga tgaaatactc caagctcttt atcatttatg
     7441 ccaaccttca ttgattgtgc ctgatgaaga aactcttcgc tgtttttttg ataatgggat
     7501 cctaattggt tttctttggc aataaagccg cttttttctt tttgataaaa cgattctatc
     7561 tgtgatttat gttctgtatt accgaattgg gcaattaact cgtctcgttt ggatgcaata
     7621 aagtcatggc ctaatgcctg aagtttatta agcgctcgca gatcccctgg gtgactatac
     7681 aattcatcgc gctctgactc attaagccta gcagctacat aagcttgaaa tgcttgattt
     7741 aaatcagtgg taatttgaga tgaatgagat tccacgaagt ttttggcatt ctgaatgcgt
     7801 gtggctttgg caagggaagc gtccacatta cggctggctg tttctgcctc tctcagatca
     7861 gcacccaatt gattagacaa tgaagccgct tgtgaatgac tatcatcaaa atgatgattt
     7921 tgagaaaact gtttcacata acttatcgcg tcattaaaat cacgcgattc acgagacgaa
     7981 agggaaccgt ccataccggt gtgatattta tcttgacttg tagaattacg atcgaattta
     8041 agatgcgcat cagcgcttgc atgaaaacca gttccccatt gtgcaagctt accccatata
     8101 ctaccctggc ttttaaaacc aacttgcgca cttaaaccac cgcttgtcaa atgtgttagt
     8161 gcgtcttctt tactaacacc taagcgtcgc gccacatcct ctgcaatatg gctaatggtt
     8221 gataaggctt tggagtattg acctgtctca ctttccgata tgctatctcc caaacgcatg
     8281 tcatgccctg ccaattgtga taattgcagg gctcgatggg caaaatttga taatgaattc
     8341 tgatagtgtg cagattcgtt tcgagcagct tgtgtcgatt gctcataagc ctggttcagt
     8401 gatgcgctta aaccttccag tgcatttata gatacagcac ttctcgtcat tcctggactg
     8461 acatcaaaca ctctatcacc gctgcccgta atggttttta acacaccact tcccaattgg
     8521 gaagtccgca tgccgtgcag gtgagtccaa ttggaatcgt gtttattggc tgagaaatta
     8581 ttagcagtag tgttatagaa actggtttga ccaagaccaa aagaggcgct ggctgcctcc
     8641 gctgccactg acatgctgga gccttgcata tgactcatca tgctggttgc gagattactg
     8701 aatgcgccgc ctagattaga aaccaaacca tgcgagagaa aaggaataag catcatcaaa
     8761 tagccacatg ctcctgagat atccgcatgc aactcatcaa tcttatcaag attcaccatc
     8821 gtaaattgac catattcacc cgatgaggaa gcgccataaa tggtcattcc tgcgttgagt
     8881 attgcaaaga gcactggcca aaattgcagc gacataaaaa actgcatata gccataaaga
     8941 attcgtatcc cgccaggtaa tgtggttaat gcaataatca acggaaatac accaaataat
     9001 ataagtgtta agcaggtgtg ggtaatcggc aaaatccata aggctttttg ccctaatact
     9061 tcccagctcc agcggtgttg tacctgggat tttgtaaatt gttggttcac aattcctgcg
     9121 gttgcatcgg taaacgcctg ataatgcgcc acgccatcgc ctatggcgtt aatcatcatg
     9181 ctttgtaaaa aaatgttact ggatgagtcg gttaatccct ggtaatactc aaaggctgat
     9241 ttaagatgag tagcaaataa cgcttcataa gtggtattct taggctttcc aaacaaattc
     9301 acgccaaaaa atgtgtaggc ttttttaatt tcagcatcca gctttttgcg caaactgtac
     9361 tgcccatcag gttttgaggc ctccaagcat gaaactaatt tgccattcac agagagcata
     9421 cgaagcggtg aagctttcac agtaataaga ttccaaatgt ccgtggaatg cgctaaatca
     9481 ctgacactgt actttcgatt taatcgaatg tctcctacga cacagatacg gaaatactca
     9541 ttcatttctt ctttaagcac gggatcttta atacgaaatg aggttgatgc tgaaaccaga
     9601 cgggaaccaa aaagagctcc tgttttggtg tattgcaaat cattgggcat ggtaagtaat
     9661 gcatcgtagg attgagccaa accatagcca atggttgtga ctaaactgga gcttaacgca
     9721 aataccacgg gtacattatc tacgagtttt ggtgtttgag aagaaatatc gtcaatcatt
     9781 acggaggttt taggtaatat caccaaattc acaaacagca cataacctaa aaaccaccga
     9841 gcaaatgcca tcggatcacg ggttttaata aaaccgatgg tggccatgac gattccaatt
     9901 aatgcggtaa ttcgtaaaag ccctaaaaaa ctgtcctgct tcataaaggc gctaatggca
     9961 tttagtacgt gttggaataa ttcacctcca gccaagacat gaattgttat catctattgt
    10021 ctccttaacc cgcagtactg ttcatttgag aagagacctg tttttcaatt tgcgccatac
    10081 gctcaatcag gttgagtttt tcttgtagtt tgcgacctac ctttggatca agtgattcca
    10141 cgtgtgtggt tgcttcatta atgcgctttt gaatttcttt gaccaaatcg gtatttaatt
    10201 cagaccctgc tgtggctaca ctgacctcac gcagtaattc gattaggtaa ttagttaaca
    10261 agtcctgggc tatcagcatt gaatactctt ctatgtctac cgcactactg ccatagtgca
    10321 tgctgtttaa taccgacaaa aacttcatca caggcagcga tgtcatactt aaaaaattaa
    10381 gctcacgatt accaggtttt tcgtcattaa tgagtttggt attgatggtg cgaataatct
    10441 cgcgtacttt ataggtaagc gttgaagttt cttgaatggt gatatcttgc aaactcacct
    10501 gcatacattg gctattgctg cccgcatcct tgcaacgcca tatctttgca gatctcgggc
    10561 catttccagt accaattagc gcattcacta aatcagcatt tccagcaagg gaaggtacgt
    10621 tggttacctt accttctttg tcaataatca gtgtcccagt taaactcatc accatttcag
    10681 ccaactctct gtcactgttt aagaatgatt tggcttgcaa cagtgaccat acaagatttt
    10741 tatttaaaac cacctgcttt ttacgctcag gatcttgaga tgctttgctc atcacattat
    10801 caaagccagt acctgcgcaa accattcgcg ccttcacata atcactgaac aatccctctt
    10861 ttcccatggc cgcctggtct ttacagattt tttgttgact ttctgcggtt tttggccaaa
    10921 tgcctcccac catgttttgt gagagctgac aggagttaat gctggcctgg ttagccattt
    10981 gttccaattg ctgcaaataa tcccttacct gtttcagttc aggaaccgta gaggcaagca
    11041 tcacatccac tgcataagca ccagcattgg tcatcaccga ttttcccaaa tcaacaagct
    11101 tttgctcact taaaaaactc atactgccag tatataaatc aatgcctcca catccagcac
    11161 ggtaactggg caaatccaat tgcaccaact gatactgacg tacctgatta cgagcataga
    11221 gtgaaccccc accaaaaaat cctgcagctt gagattcaaa ggcatcgggc gaagtcacat
    11281 tagacgcata gcccatcccg ttaaagaaat tatcgagatc ttgacttaca ttagcctgaa
    11341 caacagggaa aaaagcccat aaaaacagag ttataacggc ttttttcatt acagtctccc
    11401 cttgatttca tacgctttga tttttgaaat gagtacagcc attcggtcgt tcagttcagc
    11461 gttcgtcatg gaaccaaaac ccactggata taatgttttt gttttagggt taaccacaaa
    11521 aagtgccgga taattaatgg aattaccacc aaatgccgca ttaatccact ctgtagttgc
    11581 cggtaaaaat tttggaaatt caggcaatgg ttgattatcc aacgacaaag gcaagacttc
    11641 tgctttgttg cgatttgccc acccttttaa tatcggtgca aaccgcttgc aatgtgggca
    11701 ttggcttcca taaaacaaaa tcaatccatg ggtgctaaaa aatccctttc tttttgtatt
    11761 ttgtggctct tctcgttggt gcgttactaa accttcttgt tcggcaatca ggttagttag
    11821 ccattgagat ccttcggcct tagcacccaa gccaataaaa gcgaacatca caatcaaaaa
    11881 tacacgggca aacattattc ctctccttta aattggttga ccacttgttt tatacgttcc
    11941 atcaagacat cctgcgtagt taagccatat gccacaggtg aaacctgttg gcttgcagga
    12001 ttcaccaaca gcagtgctgg aaaataacga acacccaatc gattagcttg cccttgatcc
    12061 attcgagaat tcagcagttc gggagaggtt gcgccatcaa cactaactgg gatcagttga
    12121 atgcgaaatc gcttgcaaaa atcaacaata atgggtattt gctttaagtc ataagggctt
    12181 tttccacgat aaaaaaacaa caagccatgt gatttggaca agcggtttat aacttctatg
    12241 gtttgggatt cgcgcacctc atcggtgatt tttgcgccca gattagaagt cggatgagtc
    12301 actgcataat catattctgg atgtgccaac atcgttttct gaaacaatga cttaaatcgg
    12361 gaggactctt taagccagta atcttgcaga cttaaaaata cgcgcatgtc ctccatcttt
    12421 ttggtgtacc gtgctttatg aagcgcttcc atggtgtaga agcgcagaac agcatcgcgc
    12481 tctgtatagc ttagactctt aaaaggaata cccgaggttt ttttctcgac tctttttgtt
    12541 tccctttctt ttgtatacca tagaaaaccc accggtttat cagcaaacgc aaccccacta
    12601 agtagcaaaa aaacaattag catcctatta atcatgagca cgcccctgtt gctttaatcg
    12661 ttcaatatgg gattggttgg tctgtttaag agaatcattc ttaggcaaga ccatgcgagc
    12721 caccagctct tcctggatgg gtgataaatc caatgaggcg aaattaatgc gttcgagttc
    12781 ttcaggggta agtcctcgac aatcaggata ctgtgctgtt ccatacggaa tacctaattg
    12841 ccccccacgc ccctgaattt gaacaattga tgctaattta gtaggaaata tgcaaaaggt
    12901 ataatgtcga gcacctaatt tatggttttt ataagagcct aaatacacca cacggttttc
    12961 atgttttgca cgttgaagca cctgcagtgc ttccggacaa tgttttaccc aatcacccca
    13021 tcctgaatca gtacaacaat cgcgaaaacc cagaggatat tttttacatt cttgcgcact
    13081 tccgttaaaa attgcaggag ttccgctcct aacctggttt gcagtcacgt ctccagccac
    13141 gccggcgagt agcccaagcc ttgatatacc ttctgccatg tcatcactgg tttcatctct
    13201 tgaggtgtcg cactgtccat cgatgcaata catttttccc gggcatgcag ttttttctgg
    13261 catacaaaat tgctgcatac attggaatgt ttgggaataa cgctcacagc gattagcttt
    13321 tgactttaca caggtggatg cagtttgcga gcaaccctga ttaatgtact cagtacaagt
    13381 ggtggattga actgatccac attgatactg taatgcccta ccccaacaag gtcgtttaat
    13441 agcaactcct ccaatcactt tcacctgatt aggctctaaa cacgcttgac tctcttccaa
    13501 aaaacaatag ccattcaggt tctctgattg aataggttca caaacctgtg tttgccattg
    13561 gtcatcgctc acgtattctg tgactgttac ctgcaatgga acagacagcc ttccattgcc
    13621 tgaaagttgc actgtaacag ttgtgtcggt acaagtcggt tgtttagtca cacgcaaagg
    13681 ttggccgtgg tgtgtgacat gaacagaaat ctcttcacaa ggctgtgtca gaataacggt
    13741 attagccggt gagcactgcc tatcagctgg ggaacaagct gttaaatcaa atgttgtcac
    13801 tgacttatat cgttgtggca ccacagttcg agaaaagctc atactgagtg attttactgt
    13861 cacactcaat gtcatctctt tgcaagaaac catggagtac tgcagggatt cttcgcagga
    13921 tttaactgtt gattcgattt tgcagtggct tgcctcttta tagcaggtac cttccaagac
    13981 gccatctgga tcaccaagaa ttgtttcagc atactgcatt tcaggagtgt tgggattcgc
    14041 acgcactcga gatctgttta aggccttatt ataaacctca tgggcagtcg agttgttttt
    14101 aagtgcattt aatccaagag aagcaaaagg attgcttcct tcttgcggtt gaagcgaagt
    14161 ttcttgagga tttattgtgt agccttttaa tgcagttgct ggattaaatc cttttaagtt
    14221 ttgcaaggct tcatcacgtg catgaagtgc atcaacctgg ttttgagaaa aagaagagaa
    14281 agataggatg cagaagaaaa ttagtccgac tttactcacc gattaccctc ctgatatccc
    14341 ttggtgtaaa atcaacatcc cctcttcctg ccatacgagc taatccttct tgaatgctca
    14401 aatggccata aatcacatca aaggtctgac catcatcaac aattacagca ggtacttgct
    14461 gaattccgaa acgctcaaac agagtggggt caattgccaa gttcaaatta ggaatatgct
    14521 tgcttaatgc catcaccttc agtgccgtct cactcatcga gtcacgataa agtccgttta
    14581 aataggctgg aatgtttaat tgagcgctct cttttaatgt ctcttgcaaa agagtttccg
    14641 gtatggaaaa gctaaccaat acagatattt gtgctgcaaa ggatgaggtc atgattacag
    14701 acccaatcaa taccaaaatt ccttttctta acataacaaa ctcctgctta aagaaacgta
    14761 cagtttcgtt ttcgccacac caaaaaccca tattggtcag gtgtatgcgg cttgattttt
    14821 ccggcttccc aggctagagt gcttgaaccc cctggataac aacgcttgcc atcagccacc
    14881 tgattcacca gctcatagcg ataacgtgat ttaggggtta cggtgtaata atgctctttg
    14941 caaattgcat cagatttagg gcttgagtca gacactaaaa actcacggtg cattttgtaa
    15001 ttcatgcgct cagtcagaag ccacgctgtt tgcacgggtg atacagacgc attaacgtgt
    15061 cctgtcatcg gataatgcgt tccctgactg ccagcacacc aaaaaaggct atccagtggt
    15121 ttactagcga tggtagatga gagtgcatcc gcagcacacg cacttgcggc cacagggttg
    15181 ccaaacaata ctgactcagg acttaacaca aagctcatct ctgaatcaga ccatgtcggg
    15241 tcaagttcgg tcagataagc aatgtcaaaa tcaccttttt gcaggcaacc tgaagaggta
    15301 atcaaattaa gccagttaat gagcggatat ttataccaat gcacatgaaa aaatgctctc
    15361 tgctgcccat taccaaccac atggcgtcca cctcttccct gctttaatcc cagatttaat
    15421 tgagtgccac caagattcac cagacaataa ggtgtatccg tgacatcggt aagcgccatc
    15481 ggctcccaaa atccgatatt caagcccaag cgaacaccgg tgctggctgg acaaacgcct
    15541 atagggctgg atgcattttc agtatcagga agtgatgaat tcacaacctt tgcgttgcca
    15601 atagataagg ggaataaaca tcgccagcat acatcagtaa tagggttcac aaaatgtcct
    15661 gtacaaagct tcgcagaaga ttgataggac acaaggtaca aaacagttag aagcagtact
    15721 ctaaagtaca tcgccattct ccttgattgc ttgttcatga atgacaaggc tgttttgatg
    15781 acgtatcacc tttgctggaa cgtgaccaat gtgcagtttg ctggtaattt tccctgcctg
    15841 gtcgaaataa atcaccgagt ccaacctttt ttcagcttta ttgacggcac cgccagtcag
    15901 aatcaattta gggtttgcac actgagtttt ttgatgatct gcccaattta actgagcatc
    15961 atcatcagca ttaaagaata accaacacgg tgtataggaa ggcatatgtt gtaacgcatt
    16021 cacatgagtt ccttttgaat acagaatctg gcctttttca ttggttatgt cttggcttaa
    16081 ggtaatctca ggaacgtact cgtgtttaat tgaatggtgt gtgcgcacaa tgttcaatgc
    16141 tggtggccta ttcgcatgct cggctgccgt ttgaatccag cgctgattca aagacttaag
    16201 ctcaccactt gccttcaatg aggctaaccg ttcttcaatg agccttaaaa agctcttttc
    16261 agcaatagga aacacttcac cgactacacc aaaggatttg gcgtgaactt gccccattga
    16321 aatcataaga agaaacaagt aaaaaataat gttcacaatt tgttcctcat ggcgtggctc
    16381 atcttaattc gcatctcatc cgtaatatca acacctccgg caagaacatc agacgccctt
    16441 aaaatgatga ctttcttttg ctgtgctgta tcaaccaata ccttattcag taatgcatta
    16501 aatcttcttg ttgattgctc cacttgggac tctgtcgctt ttgcttcggc caattggcga
    16561 atgaattgac ttaagacttc ctttttatca aaaataacaa tcgatttttg aggtgataca
    16621 ccataaaaac ccaaaaccac accaaaaacc gctaatgcac aacctaaaaa tagaggagtt
    16681 aatcgcataa ttcctcccta taatatttgt ttgcaacgcg ttttattgcc tcacttaagc
    16741 tgaccccttg tttggttaac gactcaatga gacttacttc atcccctgag gttgaaaaca
    16801 gcacgcggga aaagggatcg caaaaataac gatgaaacgt ggtgacattt ccaaactgaa
    16861 tcatcagatt ggaaaaccct tgagtttttg cctcaccaaa agattcgatg acacgtgctt
    16921 caagcggact aaaatgcttt ggatgttcct ctaggtattg cttaaacgaa ccctggcgca
    16981 taatgatttt agtatcacta cttgccgcaa tagcacgtcc ctgaatagtg ttcatggtgt
    17041 ctaaaaggtt ttgtgtgatg actgcaaaac cacccatatg ctttcttgca gtacgaaagc
    17101 cctgctcgat aaagctggca cacactggat tagaaccacg agccaaaaaa cgccaggctt
    17161 catcaatgat acatcgtttt tcgcgccttc tatccgagtg ataaaattgc ccctggataa
    17221 tcacgatcat gacaaacatg acaatggtga gcagttcagg gttagattcc agctcaccca
    17281 tttcaagaac caccaaattg gaaccattga gtagaggtgt atcgctgtta aagaggtggc
    17341 cgtaaatgcc ctgacttcca tatttactca tcaaaatcag caaatcctta agccgttggt
    17401 caccttggga ttgaggtttt tctagcatcc tttgaagtga ggttaaaaca tcatccattt
    17461 ttgcgtgacg gccccgcgct ttccagcatt cagtcacagc atctaaaagc catgcttttt
    17521 gaacttcccc taatgcctct gacgggcttg ccatgattgc taacaaatct ctgatttgaa
    17581 tgtaatcgtt gacttgttcc cctttaatct cggtgacccc atcaaaatca aacagcgtaa
    17641 atggattaag cgtcaaagtg gaggcatcaa tgtagctgcc accaaccatc tcgcataaat
    17701 gcttgtaaga gccgcctaaa tcaatgacga aaatttgttg gcctcgcgat aaaccatcca
    17761 aaatttgtgc ttgctcaaag aaagatttac cagctcctgt ggaagccact gtgagtcgat
    17821 taaaattagt tatgggcaaa accctgtcat caaaggtatt taaataaaac agttgatggc
    17881 gatacgtagg tacaatgagc ccctgtcttg ctcctttaaa atcagcaatg accggcagaa
    17941 gattagcaac attggcgtga ctcagttttt tggtcatgcc caagagctca agactcgaaa
    18001 aaaggccgga agtacatata aaaggaaggg aacctaaaaa tcttaaccat tgtttgcaac
    18061 ggctctgagt taatgtaaaa cccatttgcc taaaacttgc aattgccttg gcaacatgct
    18121 cacgttcgtg gtcgctagtt gtataaagaa tgacattata aaaggtaggt aaaaggtgca
    18181 attcgccttt tgatgcatga tcgtgcacaa attgccactc ggctgcttcc tcacgaatgg
    18241 atgggttaat aaaggattga acgggattat tattcgcgtt taaggatttg gcacgagcac
    18301 gtgctttcgc cttcatcttt tcctgattca tacctcgaat ggtgaatgaa attaaaaaag
    18361 gacattggat cccctgctca gtatcaagca agttggcaaa taaatccggt gtttgccata
    18421 aagcaaatgg cttggctggg tagtgactca cctcacaatt aaccagtcga gttcgcactg
    18481 tttgtgcttg agagtcagta attgatacct cgatagcctc atctccaatt tcaatcacgg
    18541 ttgagggaca gggtatagct tctgcaataa acccatctga ttcattaatg attggccagg
    18601 acaactcatt gaaatcaggc gaaattaatg cgcgcatcag caccttaaat tcatcttccc
    18661 cacaccgcct aattccaaaa cccgcgactt taagttcgga ttcaaagtcg gctagcaaca
    18721 gttggagctg cccttccaca tcagattgca tcggtcttga aacaaaaaga taaccacaat
    18781 aatcacttaa gcccgccggc acattacggc catttttata tcctttttta atggcattca
    18841 gatggtattt cagcgtctcc cgtgcaagct cagcataaat accaccttgt tttaaaatag
    18901 gctcatagtt ttgcgcaagt tgttctccaa tccatgggtg tttatacaac aacaccgtgc
    18961 aatccgtccc tacagttaat ttatttttaa acagttgcga caggctgttc attaaggact
    19021 catccgcacc cgacatgggc attaacaaca agccaaagcc cattgagttg cgattcacaa
    19081 aaaaaccggc ttcattcacc gtttcatagg gtaaaaggct tttgatagag ggcaaatcta
    19141 aagtacacga ctcatatgct ttatcatagg agcaaagaga atcaggtttc actcctgaag
    19201 tttctccaag tagatgactt gtacgatgca ataaatctcg cgctttatcg cgccaaagag
    19261 agaaatttac gcccatgatt tctcctccat gtttcgtgca acccataaag attgcccgtt
    19321 attttgtttg attattttcc cttggcgatt tgggatatta ttttccgctt tcatcatgcc
    19381 caaagactgc tttgttggct ttatatcatc agcaaaacga gtcatagcat cgacctgctc
    19441 aatcgtcaaa caactgtcac ctgccgtggc attgcagctg aaattagaat tcattgggcc
    19501 acagccagtt aaaagaactg agataatcgg cattaggaca acaatagagt gtctcattgt
    19561 aaacctcctg tttcattgcg gcttaaggta ttcacacggt taatttttcc caagacttct
    19621 ggagggactg taaaattcat ttccgagttc ttctcttcct cacctctaga aatcaattcc
    19681 tgtgtttcct cctgcgcttt atacctctgc atcgcatgtt ggctcttgtc ttcatcgggc
    19741 tccaagtaaa agccatcttt aaagacgatg gtaaccacat tgccagaacc tacctgaatc
    19801 accggatggt attgttctgc tcgtttgaca tagtactgag ataaggtgtc agctgctttg
    19861 gaagcaccac cataagctgc aaagggtgca atttgactgc ttggcacaac ggatgttgcg
    19921 ccatatggtc caatggcttg tacgctttgc gcgtattgtg cagcacttgc aataccagac
    19981 aaggcaccac tcacaccagc ccaagtcatc actttgttat ctcgcatcaa tggtttccct
    20041 ttaataccca ccttgccatt gaaaaacacc cagcctgtaa cttccttgtc aataatgggt
    20101 tcgcctggat gagcgcaaga caaacgatag agtgtggcaa aagcacgctc gctggaaata
    20161 tcaccgtagg aattggcact gactcggcac cctcttaagc gtgagcgctg accattcggt
    20221 agcgtaccgt cttctagaaa cttaaagagc atcacgccat tatttttcga ttggccattc
    20281 actgaagcat ctgcatccgc accacctaaa atgacggcac gtactgatgt attagaaggc
    20341 acataatgag caggattaag atagaaattg tggtgcttct ttgtaatgtg tcgttttgga
    20401 cgaaaagaga cggtgtggat acgtggaatg gcatcagaca aaaccgtacc tctattcatc
    20461 gtattattca tggaatacac gttggggtta tgccatagct gagggttttg aacttccttt
    20521 aattcggaag ggttatcttg ttgttccgaa ttactttgtt tttcctgatt agctaaaacc
    20581 aattcttgta cttgagaggt caattcttct ttttgcgctt gcaattcttt ttgatgtgcc
    20641 tcggccattg atttaatgtt aagggtcaat tcactaactt gcttttttaa tgattcaagc
    20701 tctgtttgtt gtgctgtgag tgcattgtca gccaccgcat cagtaaacga ttcctctatg
    20761 attcctgtta aattcactga ttttttagcc tcaagattct ttttgggacg atcatcggcc
    20821 aatagcacaa tcatcatagc aaagagaaaa aacagaccac atcctacgac aatcaaggtg
    20881 cgcacttgac gccctttaac cattttattc cactgccagt tagccatgat gactcgcttc
    20941 cacacgatac agcatggcac gctctccagg tttaatggaa ggtttggaaa acttaatcgc
    21001 aagcgtacct tctttagcaa accaatcttg cgctaattcc aggggttctt taccgccatt
    21061 gtacaattcg atggtttcgc cctttaacaa cttgctgtcc cacgactctt tgggtaaaag
    21121 cgttaatcct tttgaccagt gctccgcgcg gccaaattga cgtcttactt tcacatcggc
    21181 aaatggcttt tgttgttcca tgtgggttag catggcaata atagcttcag ggactgcttc
    21241 ctgagtgatt tttttagggt ttgttattgg ggcgtgagtc ttggatgcag caaccactgg
    21301 cagcacggga accagttcaa tggtcttgcc cagtgactct tctccattta cggtcactga
    21361 aaaatgtcgg cctgactcag tggttaaaaa taaagtaaag ggattggcgg ctgcgagcat
    21421 aacatacacc gagccatcct gctcatcacg cttaatggcc atagcgtttg gtgggaatac
    21481 agcttccata attttatcgt tcttgactac aagacggttg tagttaccct gacttaaagt
    21541 taatgcaata tcactgttgt ctttcacggg gatgctgtta gctcccattg caaccgttga
    21601 taataaggcc agcgcaatac tgaatggttt atgcatcttg tttctccttt aaaggcgcaa
    21661 actgaactat ggatagacgg ctgtctttgt attggaactg caaaacataa gttttacgct
    21721 cgtcatttac tgcttgaagc cctacaaacc gcttcaaaat ccctgaaaca acgacagtca
    21781 gttcgtgtgg gttggcttta tttttatcaa tataaaaaat ggacgacatt tttttatctt
    21841 tgatgacctt ggcctcatta gttagtagcc gtagcatttg gttgtagttt tgatgcccaa
    21901 cataagaaag aaggcgttga tggctggcat ctaccgtttc tggtgtgacg cttaaacgtt
    21961 cattaacaaa gttttctgcc atcaggctta aatagtggcc atcaacactg gaagctgatt
    22021 tcaaataaga aggcgcacca ctaaaaggag tgacctcaat cgtatgttga ttccatgctt
    22081 taaataaaaa gcaagacagc aaaacgttcg atatcaaaag gccaaatact aaaacaacca
    22141 tcagattaaa ccgtgctgac agctgactta agcggctttg ataactttta aaatccatgc
    22201 tctctcctta agccacatac acacggtggt gtgataaagg taatttgggc agaaaaaact
    22261 gagtgatata actgggtaaa taccaataag ccaacactaa aagcaccttt ggaccctccc
    22321 ctttcttcaa atgccgcaac ccacttaaca aacccaatcc caacattgat accaatactt
    22381 tttgattgga gaggatgagc aagataaagc ttaaggccgt cactaccagc tcatccatgg
    22441 ttagcgttaa gaccctcttg ggcgcatcaa tgtggtttaa gaattgatag ttcatgttac
    22501 tcatctcctt cctccatcaa aaaacaaagg ttttcagtaa aaaggctgga ataaaggcaa
    22561 ccgcagtcac gccaataaac accatgggat tcttgctttt gacggccatt gcggttgcaa
    22621 gaatgatgtc caccaaaata aagattttcc aaaacatcga accacttccc agcgaatctt
    22681 tgacatctcc ttctaatgca cgagccaata agtcattggc aaagacactt tttgaaagca
    22741 ttgcaaacat gaacgccgag cctgcttttt gcatcaaact gactatcttt ttacccattt
    22801 tcattacttt ctccgttttt aggttataaa aatcccttaa gcacctaaat tgcttaattt
    22861 ttaagcaaaa atcacaatgt ttttattacg agaataaaat ctctttttaa gttctttgac
    22921 tcattagaag attcctgaaa tcactttgac taatccctgt tctaatgaag gacgagcctc
    22981 ttgaaatttt aaattgactt tgtctgcgtt agataccacg cgggttctat agcgctgata
    23041 ttgactatcg cgcgatgatg tttgggaagt aaccgtgctg ctaccgtttt ttaaatgaga
    23101 ttggaactgc tcattgattt taatgccctt accgactctc tcactgattt ggacatcggt
    23161 tatcatggtg taattcacat ctttgactaa agaatcagta gccatcccaa tgaccccgcc
    23221 agcaaggcca cccactatca taccagtgct tgattgagtc aaacttcctg cagcactacc
    23281 tgctgctgcg cccgcaatgg cagaaccata acccccaccc aacgcagatt gacttgcagc
    23341 aacgctcatt ttacccacct tgagtacgtt ggcttgtaac agatagtgag ctgaacttgg
    23401 actattaaca accttatagc catgcgcgct taagactgtt tttaattgag gagcaatatc
    23461 cacgtcttca tccgatgtgt tttttactga aacataaact gtcttctgag tgtttgggac
    23521 tggatccaaa aaaatcgttt cactttgttt ggtgctgact tgtaaagaac cgtgctctat
    23581 agcagtatga gttgctgcac atcccgtaag cactattaca acactagcca gtagggtttt
    23641 agtaagtcct gatttcatag tttcaatcat tgtattatcc ttatttgtcc taacaattag
    23701 tcatgaattc cagtaaaaca cttcctaaac ttttttatta atcgattaat catagttcca
    23761 tcccaactga tttctcgtct ataagctcca tcctgaattt ttttcatgaa ccctcttgaa
    23821 tttcaaaacg atggaatgga acacattctg gcgcatcaaa cgctaacttc aactgaccat
    23881 cccgttgatg atccagtacc atacaaaaca ctttgttttc tatcgctact gtctccccta
    23941 ccctgcgttt taatatcaac atattcccct tcctcttcta ttgattattt agaaaaagta
    24001 atttattgat agcatcgttt aatgcactgt ctcattctca aatggataaa ttaaaaacaa
    24061 ttgctgccgc tttaataaag aatatgcaaa cactgctgct tgtgcgtgtt tatcaaaatc
    24121 aaagccaccg atttctgtag ctgctttttg caagcacaaa atacaacctt ctaaaatatc
    24181 gaacacctct tgttctgcat tcataatgaa tttctttgat aagcgataat gccattgaat
    24241 catcatttaa gatcaggtgc attcacctag gtgcaaggat aataaaaaag tggaaaaaat
    24301 ttttagggtg tggaatttaa ttgaaatagc tattgtaatc gtaggtaatc gcaaagtatt
    24361 tagataattt tacatagtcg taaaagagtt gctctagatt ggagtcatac aaacctctat
    24421 cctttaacca attaacaaac tcatctccct tcaacagatt acgctcctct ctaaatagtt
    24481 ctacctggta gataagctcg cattcggtta tttcgtattc ttgtttatct agcattgcta
    24541 ttatagattg ataatgaagc atattagctt ttgttttagg aatggatagt aatttaacaa
    24601 tattttcagc tcgctgaaga tgagccactt ctcctatttg ctctagttca tgagaattca
    24661 accaaacagg cgataaagta gcttcaatta attttttttc aaaaagggta aaatttcttt
    24721 ttttcttacc aaaggctaaa gtcattggaa ggatttgctg gtgatttaaa taaaacaata
    24781 aggattttgc atcctctttt ttcacgtccg cataattgga cttaattaaa tgataaagtt
    24841 cctctgaaac ctgttgggca atcctacccc atgttctctc agcataaaat attgatcgaa
    24901 tagaatctaa aatcgtttcc ttattagtta tatttattct ttcaagcgtc agacgaatat
    24961 tgatcaaagg aatggtttgc tcattgttgt atttagaata agcaatggca acttcatcat
    25021 caccatcaat ttcttcattc ttatacatct cataaatacg cccataccct ttcataccaa
    25081 aagcatccag ctctgctgct ctcaaagccc ccattgaagc agctccgaat acctctaaac
    25141 catagtctag ggcagttaat atttctttat gccaaacaga aggaacacaa gaaaaatttc
    25201 catcaatgat gacaattcgt ttatatccat catttattga tttaagcaca tcaccctttt
    25261 taattgatgg tagatacttt gcatctggca atagatgcat cgcttcttga tgggataaag
    25321 aggtttctaa aaaaacgact gtttcataca tggcttatca agtccataga aattagttta
    25381 accttcacaa tacaaatttc tttgtcataa tacgtgtaca ctaaaatatc ctgattattt
    25441 tctttaatct tttcatagag tacagaaagt gcatcctcta ttgtccctac agaataatcc
    25501 tgtacttcat cgaagttctt tttattcata acaacaggaa actcactggc cttagaatca
    25561 tatttagtat taattagatc atctcgagaa cctgctatag tagttactcg cgattgaatg
    25621 gcttcagtga gtgcacgatt taaggctatt tttttattta aatggcttcc actaccctta
    25681 aataggattt gattttcaaa aggatttttt gatttaagca acacttcaaa tgaaggaact
    25741 ctataataat tttcttgata agtaatgaaa caatcaaacc ttattgataa attttcaact
    25801 aaattgctat taacaaaagc aatctcggtt atctgttgcg cgtcttgcct ctcaattact
    25861 tccaaaattc cgtgtaacag agcttcttta tagttatttc ctcctgcgag tcctgttgta
    25921 tcaggagaat aaattaaaac ttccggtaaa taagaattta atgaatattc tgcaaaaggt
    25981 acaagaatgg tcttccctga gaatactaaa tcagcatata cccaatttat tggctgtgag
    26041 ggattggtaa accgcactga gtttgcaagt tgatttattg gtataaaaag gttattactt
    26101 tgtgttaatt caagctctga tttattagtc acttgtggaa ttatttcttc agcaaaatac
    26161 acctcaatcg actccatcaa ggccgaacat ttagctgctt cctttgttaa tccttttcct
    26221 tgactcgttg ttaatgattt tgctctaggc cttattgcag tatagacggg taggctggtg
    26281 taatctaaat gtgttaagtc tgctaatcga gtaattcccg ctagtttctt aaactgattc
    26341 aataagttta gtgtttcact gaaatgacgt gctctaaaag aagtttctgc atgcctaata
    26401 atcatttaga cagactcgtt ttgaggtaat aagcatcaac gcctaacgtt ctaagctctg
    26461 aagcaaacaa tttacttcga taccctgaag cacaataaaa tactaat
//
LOCUS       DACVWI010000023        25994 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.023, whole genome shotgun sequence.
ACCESSION   DACVWI010000023 DACVWI010000000
VERSION     DACVWI010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 25994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25994
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.023"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            163..1425
                     /gene="rho"
                     /locus_tag="JBH85_03615"
     CDS             163..1425
                     /gene="rho"
                     /locus_tag="JBH85_03615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019232746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HAU0945279.1"
                     /translation="MNLSELKQLPIADLVNIAQEMGVENTSRMRKQDIIFAILKAHAL
                     KGEDIHGDGVLEVLTDGFGFLRSADGSYLAGPDDIYVSPSQIRRFGLRSGDTISGKIR
                     PPKDSERYFALLKVDQINYDTPDSAKRKILFENLTPLFATERLVMEQGNGSTEDLTAR
                     VVDLCAPFGRGQRGLIVSPPKAGKTLMLQNIARSIEKNYPECYLIVLLIDERPEEVTE
                     MQRSVKGEVVASTFDEPANRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALQRPKRLYGAARNIEEGGSLTIIATALVDTGSKMDEVIYEE
                     FKGTGNMEIHLSRNIAERRVFPAININRSGTRREDLLLSPEELQRTWILRKILQSMDE
                     CDAIEFLLERMKNHKTNAEFFDAMKRQE"
     gene            1570..3036
                     /gene="ubiD"
                     /locus_tag="JBH85_03620"
     CDS             1570..3036
                     /gene="ubiD"
                     /locus_tag="JBH85_03620"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HAU0945280.1"
                     /translation="MKYSDLRDFIAQLESRELLKRIDYPVSPHLEMTLVSDKVLRSGG
                     PALLFTNTPNYNMPVLTNLFGTVERVALGMGEESIVALREIGKLLAALKEPDPPKGFK
                     DAFSKLPLLKQALNMAPKYVSGAECQTHVWEKDEVDLTLLPIQTCWPGDVAPLITWGL
                     VTTRGPHQSRENMGIYRQQLLSKNKLIMRWLSHRGGALDYQAWQQEYPKERFPVAVTL
                     GADPATILAAVTPVPDTLSEYAFAGLLRGQRTRLTRCIGNDLHVPASAEIVLEGYLEP
                     GNEAPEGPYGDHTGYYNEVQSFPVFTVERITHRDKPIYHSTYTGRPPDEPAILGVALN
                     EVFIPLLQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYPGHAKRIMMAVWSFLRQFMYT
                     KFVIVCDDDVDARNWQDVIWAMTTRMDPSRDTVMVENTPIDYLDFASPVSGLGSKMGM
                     DATSKWPGETQREWGKPITMDEDVLNRVNGYWSLLGLK"
     gene            3012..3749
                     /locus_tag="JBH85_03625"
     CDS             3012..3749
                     /locus_tag="JBH85_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HAU0945281.1"
                     /translation="MVLIRIKIMTDKIIQAQVEDISPLTDSIVRLVLMPDEYVDYQAG
                     QYLQILFANDAFSYSIANAPLGSHRYELHIRHSQDNDYHQSLLAHIKQYGSLRLRLPL
                     GECSIDQLHPQKPILFIAGGTGFAPIKAMIEQLLADSDSRPFELFWGARSQSDLYMDE
                     KVRSWRSHASHFQYFSLLSNKSEDTLASRVLARHANILRDWQIVISGPFDMVYSTRDT
                     LVGYGISPTQMFSDAFSFESKTDDAKN"
     gene            3768..3962
                     /locus_tag="JBH85_03630"
     CDS             3768..3962
                     /locus_tag="JBH85_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019232749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945282.1"
                     /translation="METLYQILGLIGAGLIIFILYRFIKGSPGQFSKENMSKSFMTMG
                     VLGLILIGFIALLVLMLRNT"
     gene            complement(4000..4323)
                     /gene="hspQ"
                     /locus_tag="JBH85_03635"
     CDS             complement(4000..4323)
                     /gene="hspQ"
                     /locus_tag="JBH85_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HAU0945283.1"
                     /translation="MEPFMNKIAKYNIGDLVIHKRIRYRAIVIDVDPIFQASGKYNPR
                     ATQHEFATRNPWYRLLVDDSSQITYVEECQLLPDTSQEPINNPNIDDYLIKNKGSYQK
                     TIPSH"
     gene            complement(4373..5098)
                     /gene="tatC"
                     /locus_tag="JBH85_03640"
     CDS             complement(4373..5098)
                     /gene="tatC"
                     /locus_tag="JBH85_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HAU0945284.1"
                     /translation="MSFMLIHLIELRQRAIYTLLWFGALALLFFFISDQLFHLLVKPL
                     LRSLPNQEGLIATQITSSVFTPLKLAVDTALLLTAPFALLQLWRFMRPGLYKNEQEQI
                     RGTIILSLLLFVFGALFCFYLVLPYMFQFFAQALPEGVRLMPDMAYAIDFITRMLLLF
                     GFSFQVPLICLVLVKTHFTTVETLIKIRPYVIVGAFIIGMLLTPPDVFSQVALALPLC
                     LLYEAGIILARIYGKSPMPTLIQ"
     gene            complement(5204..5605)
                     /locus_tag="JBH85_03645"
     CDS             complement(5204..5605)
                     /locus_tag="JBH85_03645"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HAU0945285.1"
                     /translation="MAYRKMLKSKIHRACVTQADLDYEGSITISPELLKVANILPYEA
                     VNVWNITAGTRFETYAITGEKGSTDICVNGAAAHLVTPGDLVIIASFTQILEEDCAAH
                     EPTVVFVDQFNRLKEIRPERIGVKSRIPNPA"
     gene            5941..6711
                     /gene="rsmA"
                     /locus_tag="JBH85_03650"
     CDS             5941..6711
                     /gene="rsmA"
                     /locus_tag="JBH85_03650"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HAU0945286.1"
                     /translation="MRHSPRKRFGQNFLQDKYIINEILRAINPLADDNMLEIGPGLGA
                     LTQPLLQKLNQLTAIEIDTDLQSYLTCLPASQGKLNLIPADALTVDFCQFGPHLRVVG
                     NLPYNISTPLLIYLLKFITCIDDMHFMLQKEVVERIAAAHGTKAYGRLSVMLQYHCEV
                     EYLFDVPPEAFEPRPKVDSAIVRLTPYRVSPFESVNTEKLENIVAKAFAMRRKTLTNN
                     LKGIISLSQLNDLGIDGGKRPEQISVAEYVQLAKFISN"
     gene            6736..8085
                     /locus_tag="JBH85_03655"
     CDS             6736..8085
                     /locus_tag="JBH85_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase"
                     /protein_id="HAU0945287.1"
                     /translation="MEVVLFHRQRKSSISAQSKSLKDLIRMVTAEQFLSEEKRQVLLQ
                     KMRALSGLEASRYESLCSVLIENLVNYCQNLPETANSYYSQPGGMVDHALNRTEAALS
                     LFKEFTVQEQPDLLSEEQKLWQYALYSAAILQGIGKLFDEFRINLFDSNGQLLKQWNP
                     LLESLIQTGSYYDYQFEKEADAEFRRRLNLLLARTLMPVSGFAWIASNPEVLAVWLAL
                     LNEDYRSAGTLGAILIRADAIAIQRYFLAFMARSGARRSGRYGRAVTFTGGVPESITE
                     KEQAIGVEFIQWIIKSLDEGRIMVNKAPLFMVPGGMLMCPEMFQLFVREHPEYKNWQA
                     IQNGFLSLGLHGRDAGGNVTSRFEQAHTQQMYTGVVFAGYGVALPNSVQVHHLNTGKI
                     ESMSALELIHKSQYTSQFTQQSSAIAIAPLQRLAANGQWQNIEQDMSQLTLGAKRGA"
     gene            8063..8908
                     /locus_tag="JBH85_03660"
     CDS             8063..8908
                     /locus_tag="JBH85_03660"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HAU0945288.1"
                     /translation="MEQNAVPDYAIGDVQGCYDPLQRLLELIDFNEKEDCLWFVGDLV
                     NRGPDSLAVLRFIYSLPVKPKITLGNHDLHLLGLLFGGQPWKGHDDTLEEVMLADDGE
                     ELGHWLRKQSLLCRSSELNIVMCHAGIAPLWDLSKAVDLANELEAVLSGDSYHEFFAQ
                     MYGNKPDIWSDDLVGLDRLRVITNYFTRMRYCDAHGRLDLGYKGTLSKAPNHLYPWFE
                     VPCRKEIEMDIVFGHWAALMGRSSHPRIHAIDTGCLWGGQLTALRLQDRQRFSVPGYG
                     VSRFE"
     gene            8952..10580
                     /locus_tag="JBH85_03665"
     CDS             8952..10580
                     /locus_tag="JBH85_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0945289.1"
                     /translation="MKFLNKSTALLPVIILSGLISFHASSAKTSSNADNSLYSWTENP
                     SAEAQRVEQAEERLKAAIANPEYMLKNWIELPTSPESKKKTRHQLTIREAILLALRYN
                     PNIQNAELDRIIQRYQLRLANNEFELQYALGASGVVQKSTFEGIGSSTNHSFLASPEL
                     DLKTKIGTKASVSIDNNVSTNNSYNPVLNLSITQPLLRGFGKSANEAKLLDAIDKEWL
                     NKLSLQQSVMDQITQVITAYRALILSGNNLENQRLQLEEARKSYRINEKKIAAGQLEP
                     TGNIQQSYQIESLSLMVEQGENDFKLASQELLQMIGLDPDLHISVPSDVTIKEIIVPD
                     LQESIAIALSHNTQYLAQKMALRADERAYTVAKNQQLWQLDLAGTVQGGAVNDVTGTS
                     SGLSSIYNGNNITESARVTLTIPLNDIGRRSQLINAKVQLEKDKINLIAAKRALITSV
                     TNTINNIQSLAKRYELAQKQVKLAEQSYALEKKKQQAGISSALDVNNTQNQLIQAQSG
                     LIGAKIAYLNQLSALQRILGTTLDYWQIKLRYGG"
     gene            10577..11722
                     /locus_tag="JBH85_03670"
     CDS             10577..11722
                     /locus_tag="JBH85_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HAU0945290.1"
                     /translation="MNNYLKIFSMVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKT
                     LHFTGTVQPIRESSLTSPMEAVVETMHFHYGQMVKKGEIVLTLNSNELQKQYNDTLTD
                     YLKAKDSYSIAKAKFVGTEELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLE
                     KMDDKNTQNISNLSLADFDKVRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTV
                     GSTIKSGQVIALIGDLKGISVEIDVPEIDIDKIRPGMEATISGVAFGRHKLKGKLVAV
                     NAQASNTSTGGLPSFTAVVEVNSLTPEQQSWIKVGMSASIELNVESNNQLLIPIAAVK
                     REKGSSVVHVQLAKGKVQKRMITTGAAQADSVVVESGLKSGDVVVYD"
     gene            11703..12404
                     /locus_tag="JBH85_03675"
     CDS             11703..12404
                     /locus_tag="JBH85_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0945291.1"
                     /translation="MSWFMIDRPLIQLSDLVKTYHLEGISTTVLKAVSLTVNEGDLLA
                     IVGASGSGKSTLMNIIGLLDKPDAGTYTLNNRNVASLSDDEAADLRNQNIGFVFQQFN
                     LLPRFTAMQNVALPLTYRGVNPTLIKEKVEQALDKVGMLQYIRHRPTQLSGGQQQRVA
                     IARALVTDPQVILADEPTGALDSRTGSEVMNLFLALHQEGRTIIMVTHDEHVAAQCKR
                     RITLADGAIIAESGQ"
     gene            12347..13594
                     /locus_tag="JBH85_03680"
     CDS             12347..13594
                     /locus_tag="JBH85_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HAU0945292.1"
                     /translation="MQTPNNLSRWSNYSGVRAMNFLNHCQQALVNLTASKLRSLLAVL
                     GILVGTAAVVALISCGQLATEKALEQFKALGTDLLAVSVYQKVPSKSHSESDSLTIDQ
                     WQQIAERIPYVLRIAPYSTAYQTLSFNGKVMQGAVIGADESLADIIHVTLAQGHFVSF
                     LDSFEHFCVIGDSLAQQIKEITLDDPIGKQLRIGQSLYTIIGVAERWKENGFFNEDIN
                     QAVIIPLAGISLVSKDAKINNAVLLLKPDSPIDEVINEIKEIINSQAPKLSVFPRSAK
                     QIIASMENQGRIFTLLLAVIGGISLLVGGIGVMNVMLVSVSERKKEIGIRKAVGAKNR
                     EIQALFLVESVMLSLLGGVLGVVLGLIFTRIVAYFSDWTFTIYLLPPIAGFLVSAATG
                     IFFGFYPARRASKLEPMVSLRSE"
     gene            complement(13751..14077)
                     /locus_tag="JBH85_03685"
     CDS             complement(13751..14077)
                     /locus_tag="JBH85_03685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HAU0945293.1"
                     /translation="MNEQLNHLYGLPSHAIEALKCVFKEYPQIDNAILYGSRAKGTYH
                     QGSDIDLCLTGNLLGITELLAIENKIDDLLLPWKVDISLKHTIDNPDLLEHIERAGIL
                     FYTKES"
     gene            complement(14070..14489)
                     /locus_tag="JBH85_03690"
     CDS             complement(14070..14489)
                     /locus_tag="JBH85_03690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HAU0945294.1"
                     /translation="MTNIDVRWQQRLNNYASALQQLSLAVNLAQTRPLSDLEKQGLIQ
                     TFEFTHELAWNVMKDYFFFQGNSAITGSRDATRESFNKGLIKEGEIWMEMIKSRNQTS
                     HTYNQSVADEIVKNIINSYHTSFQAFLEKMQGLKEHE"
     gene            complement(14723..15901)
                     /locus_tag="JBH85_03695"
     CDS             complement(14723..15901)
                     /locus_tag="JBH85_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HAU0945295.1"
                     /translation="MHIKNIFTWSLMGAVILSTPLFAGEQVKLKSIDSLIDKYIEKYK
                     NEELVTGVGATFLSGTEIISTAHGFENNKRKKRLTNNAYFQIGSITKSFTAALILKLE
                     AEGKLNINQTIGDWLPEYDDWKGITIKQLLNMTSTIPGYATIPTLADSITDNPKKQWT
                     SKELVDLAYGYKHPTSGYNYSDTNYLILGMIIEKVTHDSFHNQLQEKILKPLQLKETY
                     YITDSYTPHFLKKMPESYYYGRTVENLKHGQKATNDNLSMAGPAGAIVATTSDVAKWI
                     KALFSSDFLLPKQQMELKSLISMKTGTPISHVDSEDPNGFGLGVVQGYKPQLGKYWYY
                     EGDTVGFRVLYIYHPCNEKIVVIALNSSPFVDEAAGDHSGDLLLELYKNAFGISQKCE
                     "
     gene            16439..17416
                     /locus_tag="JBH85_03700"
     CDS             16439..17416
                     /locus_tag="JBH85_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HAU0945296.1"
                     /translation="MRGRAMKKWGLAIVALMLFNQITYASQSWNQWVAGVREEALQQG
                     IPPSLFDEAFAGIHEPSRKIKGFLRSQPEHRLTFMKYRNTRADNYRIVIGRKEYKKNK
                     EILEEIAQQYGVNPCFIVSFWGMETSYGSYMGNFPVINALATLAYDSNRKDFFRKELF
                     LALHILKGGHVSLADFKGEWAGASGQPQFLPSSWVKYAVDYDGDGRKDIWKSKPDVFA
                     SIANYMKQNGWQAGEPWAIQVKLPAKFDMKLEGKGIVKPVSEWNALGVRTESGEPLPY
                     QNLQASIVQPYGGPTFLAFPNYKMILRYNNSIYYAGAIGYMADKICQGQ"
     gene            17720..18766
                     /locus_tag="JBH85_03705"
     CDS             17720..18766
                     /locus_tag="JBH85_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridine nucleotide-disulfide oxidoreductase"
                     /protein_id="HAU0945297.1"
                     /translation="MNQKSFQWSVVGAGPAGIAAVGKLLDYGIAPSEILWIDPHFKVG
                     DFGQLWRHVSSNTTVKLFSSFLHAANSFSYKKAPSTFRLNNLDPDNTCLLSDVAEPLQ
                     WVTSVLVNQVIAEETVIHSLSLSGGCWTLCSDTQQYRAKNVILATGAVPSSLNYPGVN
                     VVPFEIAIDKQRLAHVVDTNETYGVFGSSHSAIMILRSLIELGVKKVINFYRSPCRYA
                     INMGNWILFDNTGLKGDTAAWARKHIDGVLPANLVRYYPSELNIARHLPECDKVIYAV
                     GFERRKNMTIDNYEHVTPNPHVGIIGPGLFGLGIAYPELSVDPFGTIEHQVGLWKFMV
                     YLCKVLPVWFKYPA"
     gene            18843..19379
                     /locus_tag="JBH85_03710"
     CDS             18843..19379
                     /locus_tag="JBH85_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945298.1"
                     /translation="MTWLGNAKDKKMIKILIYLGLFLSSNLLMAKPLSQLDSANLLPC
                     FNIEQAERIGKQINKLLQHEFCEENINPKKFASISHNILPKIMTETFLGVTPPENWQQ
                     LSDDIIKNCIANKNLCKKAARKELEECIKPRIPLILIQFGPWLAQNCPQLNKSLIEQW
                     PNKQATLKKIINENKSAE"
     gene            19584..19805
                     /locus_tag="JBH85_03715"
     CDS             19584..19805
                     /locus_tag="JBH85_03715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945299.1"
                     /translation="MIFIETPIFTEDVKELLSDEEYAEFQEYLADNPLAGDVIQQTGK
                     LANWQTAKSSMVISRQMGSEAVLELFIIM"
     gene            19915..20205
                     /locus_tag="JBH85_03720"
     CDS             19915..20205
                     /locus_tag="JBH85_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0945300.1"
                     /translation="MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHVKEIRKKT
                     GLTQEKFCHLIDVSIGTLRNWEQGRREPTGPAKALLRAINKDPEHVLAALAG"
     gene            complement(20494..20685)
                     /locus_tag="JBH85_03725"
     CDS             complement(20494..20685)
                     /locus_tag="JBH85_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014327021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945301.1"
                     /translation="MRNKDEKAKEVATDSRCAEANRLTQLITGAILADNCFFPSGVYS
                     IKPMVSSPQPPQEKTTPSM"
     gene            21053..22495
                     /locus_tag="JBH85_03730"
     CDS             21053..22495
                     /locus_tag="JBH85_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAU0945302.1"
                     /translation="MKISTHELIAVVSQFNPWWRGESIQDLPTWHRAAYQELELWLIK
                     PPVPRAIFLSGARQIGKTTLLLQAIDKLLKEGVKPGNILYVTFDHPLIKMSDIDAVLE
                     AWREREPKTGDLEYIFIDEAQFMRSWGTWIKHQVDFSKSRRIFFTGSATPIIEADQES
                     GVGRWHTIRLTTLSFYEYLQIKKIDLPQLPTVKTLRELFEWPQQEFYKVKELAVHYVG
                     HFHEYLLRGGFPQTAQVENITQAQRLLREDIIDKVLKRDMTALFGVRRILELEQTFLY
                     LCMHDGGLLDMTDLCSNLEVKRPTIQNYIFLLEATNLIYRLPPFGYGKDILRAKYKIY
                     LADAAIAPAVLLKDKSILDDPESLGIATETAVFKHLFARYYSQNVRFSYWRGTKDHEV
                     DVVAQIGDQIIPFEVKYRSQHTNAKALKGLLELCKKKSIAHGYVVTKSLDDFGIMKAL
                     PEIKTNIMQIPAPLLCYWMGESELRQTFGV"
     gene            complement(22657..24144)
                     /locus_tag="JBH85_03735"
     CDS             complement(22657..24144)
                     /locus_tag="JBH85_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2912 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945303.1"
                     /translation="MSYSKIDVLERKWSSLEAIVKSYTDPVEYHLSEIKKLMTAEFVV
                     DFSSHAIYLHTEYVHRFTQQLINLRNTSPNDEKLLYIHQLWTDLLNCRNQNPLKIKHH
                     KKLDGECTFNFSLKMMEGKPYGFKEVQILDPNNTAELNKAMGEIKRIDSLAHGANFGD
                     LPFIGDIVLSSMLHYKETICFIAKDKNDEVIGYCWGMMLRDIPAGEKNKVNVFWVMNL
                     AKHPDFYDPNIKVGEALRQHLANTLSKNPDCHFLGYEHVLNHNFHLAIVDGGVPKKEE
                     TISIGQNQYQAKSLVKYEPLKMQYDRKHIIKTNNHQYPYPKVDVIKSNFFTALWYAAP
                     TAFDFILGGILIYGRAYYQQWTHSMLGQPVTHRIEKPISQEQQICDLNILKRIILSDV
                     WGQQGTTLFFDACIPNTIQKLQQLVKEDQIEFPSLQQCVAKSGWALCRSKLTAYFYFA
                     ITQSQYPSAAINLLIQNDMTPKKWIELISEERQISAQQSSERASI"
     gene            24462..24563
                     /locus_tag="JBH85_03740"
     CDS             24462..24563
                     /locus_tag="JBH85_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010280437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 domain-containing protein"
                     /protein_id="HAU0945304.1"
                     /translation="MLKFSRIFPNREIVSTLSKQLSWSHFVMIWVLM"
     gene            24650..25921
                     /locus_tag="JBH85_03745"
     CDS             24650..25921
                     /locus_tag="JBH85_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S10 family peptidase"
                     /protein_id="HAU0945305.1"
                     /translation="MSIFRSVLITLLFISSAMAATPDQVTYLPGWGPIKNNQYAGYFP
                     VNPKAGLFYWFVESNNPSMDAPIVLWLNGGPGAASLYGFFMENGPYQVDKNGKLTARK
                     DSWTKAANYLVIDQPAGVGYSYGSSKSYGSEGEAIDQLQGALQLIFKKHPELYGKPLF
                     LAGESYAGKYLPQLAIRLLKDKNMNLKGLLLGDPWINPRLQQKANIDYAYYHGLIDNK
                     ARKRVRVLYENCVKEIDKQSPSTSKANKTCEQIQEFIKQESGGLNLANIATGVEPEDT
                     NMVNYLNQKVVREALHIPVTVSEFKTFSTAAAKKLEIGEQDSVADLYPQLLAAGIRIL
                     IYNGLEDGKDSNFLSTELLLASLDWHGKNAFAKAPTCIWRTNNEVSGYAKGAVGLTQV
                     KIRGAGHLAPIDQPARVFDLFKHFINDKPLC"
BASE COUNT         7758 a         4903 c         5601 g         7732 t
ORIGIN      
        1 aaatgttgga tcttgttgta aagctgtgat agcctgtagc tatatgtgac atgctttaaa
       61 acaagtgagc cacataggca gcggattcct tagctgctat tccctaacat aattttttct
      121 tcggatattc aattcattta aacaacaaat caagtgagaa gtatgaatct tagtgaactt
      181 aagcaattac ctattgccga tctcgttaat atcgcacaag agatgggtgt ggaaaatacc
      241 tcccgtatgc gcaagcaaga catcattttc gccatcctta aagcccatgc tttaaaaggg
      301 gaagacatcc atggcgatgg tgttttggaa gttttgactg atggttttgg tttcttgcgt
      361 tccgctgatg gctcctatct ggcaggccct gatgacattt acgtctctcc cagtcaaatc
      421 agacgtttcg gtcttcgttc gggggatact atttctggta aaatccgccc ccccaaagac
      481 agcgaacgct attttgcttt attaaaagtt gatcaaatta actacgatac accggatagc
      541 gcaaagcgta agattttatt tgaaaactta actcccttgt ttgctaccga gcgtctggtt
      601 atggagcaag gtaatggcag cacagaagat ctcacggcaa gagtagttga tttatgcgct
      661 cctttcggcc gcggacagcg tggtttgatc gtgtcacctc cgaaagcagg taagacatta
      721 atgttgcaaa acattgctcg ctctatagaa aaaaattatc ctgaatgtta tctcattgtt
      781 ttgctgattg atgaacgtcc tgaagaagta acggaaatgc agcgttctgt caaaggtgaa
      841 gttgttgcga gtacttttga cgagcccgcc aatcgccatg ttcaggttgc cgaaatggta
      901 atagaaaaag caaaacgtct ggttgagcat aaacgtgatg tggttattct gctggattcg
      961 atcactcgct tggccagagc ttacaatacg gttgtaccgg catcaggtaa agtactgact
     1021 ggtggtgttg atgcgaatgc cctgcaaagg cccaaaagat tgtatggtgc ggcacgtaac
     1081 atagaagagg gcggcagttt aaccattatt gcaacggctc tggtagacac gggttccaaa
     1141 atggacgaag tgatttacga agagttcaaa ggtacaggta acatggaaat ccacttgagt
     1201 cgtaatattg ccgagagaag ggttttccct gcgattaaca ttaatcgctc tggtactcgc
     1261 cgtgaagatc tcctgttgag ccccgaagaa ttacagcgca cctggatatt gcgtaaaatc
     1321 ctgcaatcca tggatgaatg cgatgcgatt gaattcttat tggaacgcat gaagaatcat
     1381 aagacaaatg ccgaattctt tgatgcaatg aagcgtcagg aataatttaa atgataatta
     1441 accccgtaat tagcggagca taattcgggg ttcaaattcg ccttattttc aggtttataa
     1501 ttcatgctca tagcctgtat tacgctgtgc tggtacgggt ttacagtaag cttctttttg
     1561 agataattaa tgaaatattc agatctgaga gatttcatag cccaacttga atcacgtgaa
     1621 ttattaaaac gtattgatta tcctgtatca cctcatcttg agatgaccct agtcagcgat
     1681 aaagtgttgc gctcaggagg gccagccctt ctgtttacca atacccccaa ttacaacatg
     1741 cctgtactga ccaatctttt tggtacggta gagcgcgtgg ctttgggaat gggtgaggaa
     1801 tcaatagtgg ctttgaggga gattggaaaa ttattggctg ctttaaagga gcccgatcct
     1861 cccaaaggct tcaaagacgc ttttagcaag ttgcccttat tgaaacaagc gctgaatatg
     1921 gcacccaaat atgtcagtgg agccgagtgc cagactcatg tgtgggaaaa ggatgaagtg
     1981 gatttaacct tattgcccat ccaaacgtgt tggcccggag atgttgctcc tctaattacc
     2041 tggggtttgg ttactactcg tggcccacac cagtccagag aaaacatggg catctatcgc
     2101 cagcaactat taagtaaaaa caaattgatc atgcgctggt tatctcaccg cggaggtgct
     2161 ttggattacc aggcctggca acaagaatat cccaaagagc gtttccctgt tgcggtgact
     2221 ttaggcgctg atccagccac catactggca gcagttactc ccgttcctga tactttgtct
     2281 gaatacgctt ttgcgggctt gcttagagga caacgaactc ggttgactcg atgcattggc
     2341 aatgatttgc atgttccagc cagcgcagaa attgttttgg aaggttatct ggagccagga
     2401 aatgaggcgc ccgaagggcc ttatggcgat cacaccggtt attataatga agtccaatct
     2461 tttcctgttt ttacggtaga gcgtattact catcgcgata aacctattta ccacagtact
     2521 tataccggaa gaccgccaga tgagccagcc attttgggag ttgccttaaa tgaagtgttc
     2581 attcccttgt tacaaaaaca attcccagag attgtggatt tttatttgcc gccagaagga
     2641 tgctcttatc gtttggctgt agtcactata aaaaagcaat atccaggaca tgctaaacgt
     2701 attatgatgg ctgtttggtc tttcttgcgc cagtttatgt ataccaagtt cgtcattgtt
     2761 tgtgatgatg atgtggacgc gcgcaattgg caagatgtca tatgggcaat gaccacacgc
     2821 atggatccgt cccgcgatac agtcatggta gaaaatacac ccattgatta tctggacttc
     2881 gcttccccag tttcaggatt gggttccaag atgggtatgg atgctaccag taaatggcca
     2941 ggagaaacac aaagagaatg gggtaaacca attacgatgg atgaagatgt gcttaataga
     3001 gtaaatggtt attggtcctt attaggatta aaataatgac agataaaata attcaagctc
     3061 aggtggagga catttcccct ttaacggaca gcatcgtgcg attggtctta atgcctgatg
     3121 aatacgttga ttatcaagcc ggacagtatt tgcaaatcct gtttgcaaat gatgcgttta
     3181 gttattcaat tgcaaatgcg cctttaggtt ctcatcgtta tgaattgcat attcgccata
     3241 gccaggataa tgattaccat caatcgttat tggctcatat caaacaatat ggatctctgc
     3301 gcttaagatt acctttgggt gaatgcagta tcgatcaatt acatccccaa aaacccattt
     3361 tattcattgc cggtgggact ggatttgcgc caattaaagc catgattgag cagttactgg
     3421 cagattcgga cagcaggcca tttgagttat tttggggagc acgctcacaa agcgatttat
     3481 acatggatga aaaagtaagg agttggcgct cccatgccag ccacttccaa tatttttcgc
     3541 tattatccaa taaaagtgag gatactttgg cttctcgagt tcttgccagg catgcaaaca
     3601 ttctacggga ctggcaaatt gtcatcagcg gtcctttcga tatggtgtac agtactcgtg
     3661 ataccttggt tggttatggc atatcgccta cccagatgtt ttcagatgcc tttagttttg
     3721 aatccaaaac agatgatgca aaaaactgag tggaatggag tgaattaatg gaaactttat
     3781 atcaaatttt aggactcatt ggcgccggat tgattatttt tatattgtac cgatttatta
     3841 agggaagccc agggcaattt agcaaggaaa atatgagcaa aagctttatg acgatggggg
     3901 ttttaggtct gattttaata ggttttattg ccttgctggt gttgatgttg aggaatacat
     3961 aaccaactcc atgccctgtt ggcatttcca cctcataagc tagtgagacg ggatagtttt
     4021 ctgataactg cccttgtttt taattaaata atcatcaata tttgggttgt tgataggttc
     4081 ctgactcgta tcaggaagta actggcattc ttcgacataa gttatttggc tgctgtcatc
     4141 aactaacagg cggtaccatg ggtttcttgt tgcgaattca tgctgagttg ccctgggatt
     4201 gtatttccct gaggcttgga atatggggtc cacatcaata acaatcgccc ggtatctgat
     4261 gcgtttatga ataaccagat caccgatatt gtatttggct attttattca taaaaggctc
     4321 catttttgag cattatgata aatatatcgg taattccgct tttaacttga gcttactgaa
     4381 ttaaagtggg catgggggat ttcccataaa tcctggctaa aataatcccc gcctcataaa
     4441 gcaaacacaa aggcaatgct aatgcaactt gagaaaaaac atcagggggg gtgagtagca
     4501 taccaataat aaatgcccca actatcacat aaggcctgat ttttataagt gtctcaactg
     4561 tagtgaaatg ggtttttacc agtacaagac aaattagtgg aacctgaaaa gaaaaaccaa
     4621 ataaaagcag catgcgtgta atgaaatcta tggcgtaagc catgtcaggc atgagtcgca
     4681 ctccttccgg aagggcctga gcaaaaaact ggaacatata agggaggaca agataaaagc
     4741 aaaatagtgc cccaaagaca aagagcaaaa gacttaaaat gatggtgcct ctgatttgtt
     4801 cctgctcgtt tttatagagt cccgggcgca taaaacgcca aagttgcaat aaagcaaacg
     4861 gagcagtgag caacaaagcg gtatccactg caagttttaa aggggtgaaa accgaggaag
     4921 taatctgtgt ggcaatcaag ccctcttgat tcggtaaaga tcgcaataac ggctttacca
     4981 ggagatgaaa cagttggtct gatatgaaaa aaaacaatag cgctaaagcg ccaaaccaga
     5041 gaagggtata gattgctctt tgccgtaatt caattaaatg aattaacata aagctcattg
     5101 gggttgaatg ccgagatcat agaataaacc attccatttg atttttctat ttttgatcat
     5161 tgtctgacaa agtagcatat gaacccattg ctatgggtcc aattcaagcc gggttaggaa
     5221 ttctactttt aacaccgatt ctttcaggtc ggatttcttt cagacgattg aattgatcaa
     5281 caaaaacaac agtgggttca tgtgctgcgc aatcctcttc cagaatttgc gtaaaagagg
     5341 cgataataac caaatcaccg ggggttacca aatgagctgc cgctccattg acacagatat
     5401 ccgttgaacc cttttcacct gtaatggcat aagtttcaaa tcgggttccg gcagtgatat
     5461 tccagacatt aaccgcttca tatggcaata tgtttgccac ttttaaaagc tctggtgaaa
     5521 tagtgatact cccttcataa tccagatctg cctgtgtgac gcaagcacga tgaatttttg
     5581 atttaagcat ttttctataa gccattattt gcttcctaaa tttgagtctg gaaaaagcaa
     5641 ctggctaaat acaactgagt ttatttgtta catggctttt tccagattga aataactaaa
     5701 aaaagagata agaatatcaa ccttggtcat tgtggttgaa ttttacccca taccttggag
     5761 gttacgctat ataaattttt aaaattgagg gagaaggctt tgagttattg cgtattgtcg
     5821 gggtttgctg gcacttgaca ctaacctacg gtaaaattaa caggcttccc caaatggggt
     5881 ataccttgtg atgtcaacaa gattactgaa ttaattttat cctaacatag gtgatagaaa
     5941 gtgaggcata gcccacgtaa acgttttggt caaaatttct tacaagacaa atatattatt
     6001 aatgagattc tacgcgctat caatcctttg gcggatgata atatgctgga gattggccct
     6061 ggtttaggcg ctttaactca gccattattg caaaaactga atcaattaac agccattgaa
     6121 atcgatacgg atttacaaag ctatttaacc tgcttgcctg catctcaagg caaactgaat
     6181 ttaattcctg ctgatgcgtt aaccgttgac ttttgtcaat tcggccccca tttaagagta
     6241 gtgggtaatt taccttataa tatttctact ccattgctga tctatttatt gaaatttata
     6301 acttgtattg atgacatgca ttttatgtta caaaaagaag ttgtagaacg aatagcagca
     6361 gcccacggca ctaaagccta tgggcgacta agcgtgatgt tgcagtatca ttgtgaggta
     6421 gagtatttat ttgatgttcc tccagaagcg tttgagccca ggcccaaggt agactcagca
     6481 atagttcgat taacacctta tcgtgtttcg ccatttgagt ctgtaaacac tgagaaactg
     6541 gaaaatattg ttgctaaagc atttgctatg agacgcaaaa ctcttactaa taatttgaaa
     6601 gggattatct cattatctca actcaatgat ttaggcattg atggaggtaa gcggccagaa
     6661 caaatttcgg tggcggaata tgtccaacta gcgaaattta tttccaatta gtgtaaaatt
     6721 atatgataag ttattgtgga ggttgtcttg tttcatcgtc agcgtaaaag ctctatatct
     6781 gctcagtcca agtcattaaa agatttaatc cgtatggtga ccgcagagca gtttctgagt
     6841 gaagagaaac gtcaggtact actccagaaa atgagagcgt tgagcgggtt ggaagcctct
     6901 cgctatgaga gtttatgttc tgttcttatc gagaatctgg tcaactattg tcaaaatttg
     6961 ccagaaaccg cgaacagtta ttattctcaa cctggtggga tggtcgatca tgctttaaat
     7021 agaacagaag ctgcattgag tctgttcaag gagtttaccg ttcaagaaca gcccgatttg
     7081 ctttctgaag agcaaaaact ttggcaatat gcgctttact ccgcggcaat tttgcaaggc
     7141 attggcaaat tatttgatga gtttcgcatt aatttgtttg atagcaatgg ccaattgtta
     7201 aagcaatgga accccctgtt agagagctta attcaaactg gaagttatta tgattatcaa
     7261 tttgaaaaag aagcggatgc ggagttccgc cgccggctga acttgttgct ggccagaact
     7321 ttgatgccag tcagtggttt tgcctggatt gcctccaatc cggaagtatt ggctgtttgg
     7381 ttagctttac tgaatgaaga ttatcgttct gctggtactt tgggcgctat tttaattcgg
     7441 gctgatgcca ttgcgataca gcgctatttt ctggcgttta tggcacgaag tggggcaaga
     7501 cgaagcggcc gttatggcag agctgtaact tttaccggcg gtgtaccgga atctataaca
     7561 gaaaaggaac aggcaatagg ggtcgaattc atccaatgga ttatcaagtc gttggatgaa
     7621 ggtcgaatta tggtgaacaa agccccgttg tttatggttc ctggcggcat gctgatgtgc
     7681 cctgaaatgt ttcaattgtt tgttcgtgag catcctgaat ataaaaattg gcaagccata
     7741 cagaatgggt ttttatcatt agggcttcat ggccgggatg cggggggcaa tgtaaccagt
     7801 cgttttgaac aggctcatac tcagcaaatg tataccgggg tcgtttttgc aggatatggg
     7861 gttgctttgc ccaactctgt ccaggtgcac catttgaata cgggcaaaat agagtccatg
     7921 tcagcactgg agttaattca taaatcacaa tacaccagcc aattcacaca gcaatcaagt
     7981 gcgattgcaa tagcgccttt gcagcgattg gcagccaatg gccaatggca gaatattgag
     8041 caggatatgt cccaattgac acttggagca aaacgcggtg cctgattatg caatagggga
     8101 tgtacaaggt tgttatgatc ctttacaacg gttgcttgag ctaattgatt ttaacgagaa
     8161 ggaagattgc ttgtggtttg ttggggactt ggtaaaccgc ggtcctgatt cattggctgt
     8221 attacggttt atttattcct tgcctgtgaa acccaaaata accttgggta atcatgattt
     8281 gcatttatta ggcttattat tcggcggaca accctggaaa gggcatgatg atacacttga
     8341 agaggtgatg ctggctgatg atggagagga actggggcat tggttgcgca agcaatccct
     8401 tctttgcagg tcatctgagt taaacatagt catgtgtcat gcaggtatcg cgcctttatg
     8461 ggatttatcg aaggccgtgg acctggctaa tgaattggaa gcggtgcttt caggcgattc
     8521 atatcacgaa tttttcgccc aaatgtacgg caataagccg gatatttggt cagatgattt
     8581 ggttgggctg gatagattac gagtcattac caattatttt acccggatgc gctattgtga
     8641 tgcccatgga cgattagatt taggttataa ggggacttta tccaaagccc cgaatcatct
     8701 gtatccctgg tttgaagtgc catgccgaaa agaaattgaa atggatatcg tttttggtca
     8761 ttgggcggcg ctcatggggc gaagttctca tccgcggatt catgcgatag ataccggatg
     8821 tctttggggt gggcaattaa cggcattacg cctgcaggac aggcagcgct tttcggtacc
     8881 cgggtatggg gttagtcgtt ttgaataacc ttgatggata ggcattttta taaatacagg
     8941 cgataacaac ggtgaaattt ttaaataaaa gcacagcatt gttaccggta attattttat
     9001 cgggcctgat tagttttcat gcctcaagtg ccaagacttc ttcaaatgct gataattcac
     9061 tttattcctg gacagaaaat ccttcagctg aagctcagag agtggagcaa gcggaggaaa
     9121 gactaaaggc agccattgcc aacccggaat acatgctgaa aaattggata gagttgccta
     9181 cctcgcctga atcaaaaaag aaaacaagac atcagttgac gataagagaa gctatactgt
     9241 tggcattgcg ttataatccc aatatccaga atgcggaatt agaccgtatt attcagcgct
     9301 atcaattgcg tttggctaat aatgagtttg aattgcaata tgctcttggt gcttcaggcg
     9361 ttgtgcaaaa aagtactttt gaggggatag gcagttctac gaaccattct tttctggcca
     9421 gtcctgaatt ggatttgaaa accaaaatag gcaccaaggc gtccgtatcc attgataaca
     9481 atgtttccac caacaacagc tataatccgg tattgaattt atccattact cagcctttgc
     9541 tccgtggatt tggcaagtca gcgaatgaag caaaactgct ggatgcgatt gataaggaat
     9601 ggctaaataa attaagttta cagcaatcgg ttatggatca gattacccag gtgattacgg
     9661 cgtacagggc tttgatttta agtgggaata atttagagaa tcagcgcttg caattggaag
     9721 aagccagaaa atcctatcgt attaatgaaa aaaagattgc agcgggacaa ttagaaccta
     9781 ccggaaatat tcagcaatcc tatcagatag aatctttgag tttgatggta gaacaaggtg
     9841 aaaatgattt taaattagcc tctcaggaat tattgcaaat gattgggctt gatccggatt
     9901 tgcatatttc agttcccagt gatgtgacga taaaggaaat tatagtgcct gacttgcaag
     9961 aatccattgc catcgcatta agtcacaata ctcagtatct ggcccagaaa atggctttgc
    10021 gtgcggatga gagggcttac actgttgcaa aaaatcagca actttggcag cttgatttgg
    10081 caggtactgt gcaaggtggc gcagtcaacg atgtcaccgg aaccagcagt ggtttaagca
    10141 gcatttacaa tgggaataat atcacggaat cagccagggt caccctgacc attccattga
    10201 atgacattgg acggcgtagt caattaatta atgctaaagt ccagttggaa aaagacaaaa
    10261 tcaatcttat cgcagccaaa agagctttaa ttaccagtgt aaccaatacc atcaataata
    10321 ttcaaagctt ggccaagcgc tatgagctgg cacaaaagca agtcaaattg gcagagcagt
    10381 cttacgcttt ggaaaagaaa aaacagcagg caggaatatc gagcgccctg gatgtgaaca
    10441 atactcagaa tcaattgatt caggcacagt caggattgat aggggcaaaa attgcgtatc
    10501 tcaatcagtt atccgcgttg caaaggattt tagggaccac gctggattac tggcagatta
    10561 aactaaggta tggcggatga acaattatct gaaaatattc tctatggtgt cattgatttt
    10621 aatgctggtt tcttgtggca gttctgataa gccgcaaacc tcttcattaa aaacgtatga
    10681 agtgaaacct caacctttac acaagacctt gcattttacc gggaccgtgc aacccataag
    10741 agaaagcagc ctgaccagtc caatggaagc cgttgttgaa accatgcatt tccattatgg
    10801 ccagatggtt aaaaagggag agattgtttt aactttaaat tccaatgaat tgcaaaaaca
    10861 gtataacgac acattaacgg attacttaaa ggcgaaagac agttattcca ttgccaaggc
    10921 aaaatttgta ggaaccgaag agctgtggaa tgccgggtta atctccaaaa acaattactt
    10981 aagtgaaaaa tcaggcttgg atacagcgcg ggttacttta atgcaggcca cccgcaagct
    11041 ttctgaaatg ttggaaaaaa tggatgataa aaacactcag aatatatcca atctcagtct
    11101 ggctgatttt gacaaagtga ggaagattct tacgtcaaat cataatctga ttcatttaaa
    11161 ggctcccagt gatgggataa tgctgtaccc tcccaaatca ggagaggata aaaacaatcg
    11221 agtgaccgta ggatcaacca taaagtcagg acaagtcatt gccttgatag gcgatttgaa
    11281 aggaatcagt gtggaaattg atgtcccaga gatagacatt gataaaattc gcccgggaat
    11341 ggaggcaaca attagtggcg ttgcatttgg caggcataag ctgaaaggta aattggtggc
    11401 ggtgaatgcg caggcatcga ataccagcac gggaggatta ccctccttta ccgctgtagt
    11461 ggaggtcaat tccctaactc ctgaacaaca gtcgtggatc aaagtgggga tgagtgcctc
    11521 catagagctg aatgtggaat cgaataatca attgttaata cctatcgcgg cggttaaaag
    11581 ggaaaaaggc agcagcgttg ttcatgtcca attagccaag gggaaagttc agaaacgaat
    11641 gattactacc ggtgccgctc aagcggattc agtagtggtt gaaagtggcc ttaaatcagg
    11701 agatgtcgtg gtttatgatt gacagacctt taatccaact ttctgatttg gtgaagactt
    11761 atcatcttga gggtatcagt accacggtat taaaagcagt gtctttgacc gtaaacgaag
    11821 gtgatttgct cgctattgtc ggtgcgtccg gctctggtaa atccacgtta atgaacatca
    11881 ttggcttatt agataaaccg gatgcaggaa cttatacctt aaataataga aatgtggcca
    11941 gtttaagcga cgatgaggcg gctgatttgc gcaatcaaaa tataggtttt gtttttcagc
    12001 agtttaattt gcttcctcgt tttacagcga tgcaaaatgt ggctttgcct ttgacgtacc
    12061 gaggagtcaa tcccactttg ataaaagaaa aagtggagca agcattggat aaagtaggaa
    12121 tgctccaata catccgccac aggccaaccc aattatctgg cggtcagcag cagcgagtcg
    12181 ctatcgccag agcgttagtg accgacccac aggttattct cgctgatgag ccgaccggtg
    12241 cgctggattc aagaacaggt agcgaggtaa tgaatttgtt tttggcttta caccaggaag
    12301 gccggactat tatcatggtg acccatgatg agcacgtggc agcgcaatgc aaacgccgaa
    12361 taaccttagc cgatggagca attatagcgg agtccgggca atgaattttc ttaatcattg
    12421 tcaacaagcc ttggttaatt taacagcctc caagctccga tcgcttttgg ctgtgctggg
    12481 aatactggta gggaccgccg ctgtcgttgc cttgattagc tgtggacagc tggctaccga
    12541 gaaggcgctg gagcaattca aggcattggg tactgatttg ctggctgttt ctgtttatca
    12601 aaaggtgccc agcaaatccc atagtgaatc cgactcgtta acaatagatc aatggcaaca
    12661 gatagccgag cgtatacctt atgtcttaag aattgcgcct tacagcacgg cttaccaaac
    12721 tttaagcttt aatggcaaag tgatgcaggg ggcggtgatt ggcgccgatg aaagccttgc
    12781 tgatatcatt catgtgacct tggcgcaggg gcattttgtt tcttttttgg attcttttga
    12841 gcatttttgt gttattggcg atagcctggc acaacaaatc aaagaaatta ccctggatga
    12901 tcccattggc aagcaattac gcataggcca atccttgtat accattatcg gcgttgccga
    12961 gcgttggaaa gaaaatggtt tttttaatga ggacattaac caggctgtca ttattcccct
    13021 ggctggaatt agcctggtca gcaaggacgc caaaatcaat aatgcagtat tgcttctcaa
    13081 gccggacagc cccattgatg aggtcattaa tgaaataaag gaaatcatta attctcaggc
    13141 gccgaaactc agtgtttttc cgcgcagcgc caaacaaatt atagccagca tggaaaatca
    13201 gggccgtatt tttaccttgc tgttggcagt cattggtgga atatccttgc tggttggcgg
    13261 tatcggtgtc atgaatgtga tgctggtttc ggtcagcgag cgcaaaaaag aaattgggat
    13321 tcgcaaagca gtgggtgcga aaaacagaga aatccaggcc ttgtttttgg tggagtctgt
    13381 catgctgtct ttgctagggg gtgtactcgg agttgtttta ggattgattt ttaccagaat
    13441 agtcgcttat ttcagtgact ggacttttac tatctactta ctccccccaa ttgctggctt
    13501 tctggtttct gctgccactg gaatcttttt cggattttat ccggcccgac gggcctcgaa
    13561 actggagccg atggtttctt tacgcagtga atagtttatt agggtctgtt gacatttcta
    13621 ctatcttggc cgaaaagcct tgattttctg tgctccgtta ctcacatact tctatgtatg
    13681 ctccgctacg gtgctcgaaa atcaaggctt ttcgactcaa gcgagcgaaa tgtcaacaga
    13741 ccctaaagtc ctacgattct tttgtataaa acaggatacc cgctcgctca atgtgttcaa
    13801 gcaaatcggg attgtctatg gtgtgtttca gggatatatc gaccttccag ggtaacagta
    13861 aatcatcaat tttattttca atagcaagta attcagtgat ccctaataag tttccggtaa
    13921 ggcaaagatc aatatctgag ccctgatgat atgtgccttt ggcacgagat ccgtagagaa
    13981 tcgcattatc aatttgagga tactctttaa agacacattt caatgcttca atagcatggc
    14041 tgggcaagcc atacagatgg tttaattgct cattcatgct ctttcagacc ttgcattttt
    14101 tccaggaatg cttgaaaaga agtgtggtag gaattaataa tatttttgac aatttcatcg
    14161 gcaacggatt ggttgtaggt atgagaggtt tggttacgac ttttaatcat ttccatccag
    14221 atttcacctt ctttaattaa tcccttgtta aatgattcgc gtgttgcatc acgagaacca
    14281 gtaattgcag aatttccctg gaaaaagaaa taatctttca tcacattcca agccagctca
    14341 tgagtaaatt caaaggtttg gattaagcct tgcttttcca agtcggataa gggtcttgtt
    14401 tgcgccaggt tgacggcaag tgataattgt tgaagcgcac ttgcataatt atttaaccgt
    14461 tgttgccagc gaacatcaat attggtcata acttacttac tccagatttt gaggttgtac
    14521 cggttaattt aatgaagcga ctttatcaaa ttataaaaac tcattttata atgaaaaaca
    14581 cgaggtattc cagaagcgtt ttttatctaa acaggttttt tgcaccggat ttacaagtac
    14641 tttaagacca taacctatat ccctcttgca tgactcacct ctttttgaaa ggttgccaaa
    14701 agaagttgga ttttacccta ttttactcac atttctgtga tatgccaaaa gcgtttttgt
    14761 acaattccaa taacaaatca ccactatgat ctcccgctgc ttcatcaaca aaaggcgaac
    14821 tgtttaatgc aataaccact attttttcat tacaaggatg ataaatatat aagactctaa
    14881 atcccactgt atcaccttca taataccaat attttcccaa ttgcggctta tagccttgaa
    14941 caacacctaa accaaagcca ttaggatctt ctgaatcaac atgggagatt ggagtacccg
    15001 ttttcatcga aatgagggat tttaactcca tttgctgttt cggcagtaaa aaatcggatg
    15061 aaaataaagc ttttatccat ttggcgacat ccgatgtagt tgcgacaata gcaccagcag
    15121 gtcccgccat tgataaattg tcattggttg ccttttgacc atgttttaag ttttccactg
    15181 ttctaccata atagtaactt tccggcattt tttttaaaaa atgtggggta taagaatcag
    15241 taatataata ggtctctttt aattgtaagg gctttagaat tttttcctgt aattgattat
    15301 gaaaggaatc gtgagtgact ttttctataa tcatacccag aattaagtag ttggtatcag
    15361 agtaattata acctgaggtg gggtgtttat atccatatgc taaatctacc agctctttac
    15421 tagtccactg ttttttagga ttatcagtaa tcgaatctgc aagcgttgga atcgttgcat
    15481 aacctggaat tgtacttgtc atattaagta attgctttat agtaatgcct ttccagtcat
    15541 cgtattctgg caaccaatct ccaattgttt ggttgatgtt taatttccct tccgcttcaa
    15601 gctttaagat taatgcagct gtaaacgatt tggttatact gccaatttga aaatatgcat
    15661 tatttgtaag gcgttttttt cttttattgt tctcaaaacc atgggctgtt gatattattt
    15721 cagttccgct taaaaaagtc gcacccacac ctgtaaccag ctcttcattt ttatattttt
    15781 caatgtattt atcaattaat gagtcaattg atttcaattt aacttgctcg cccgcaaata
    15841 agggcgtaga tagaattact gcgcccatta aactccatgt gaatatattt ttgatatgca
    15901 tatttaactc ctttggatca aagcctcagt tatactatga acactcattt ctttttattc
    15961 cagtttactt acatacaagc atatcagtac ctgggttatg gtatttaatc tctgcatgtt
    16021 aaagaagctg tgctccctag agactctttg ttttttgcaa tactgcatcc taaaatctat
    16081 tttgtcatca aaggagttat catattgaca aaaaatagaa tggaaaaaga tgcgaaaaaa
    16141 tcccataaca atcttcgcag gccaagacta gtctatagct gcactttctt ctaatgagcg
    16201 ggttctaatt atagatttcc atgaaagatt actttctgta caatacttat tgttgggtct
    16261 gactttctgg ttcaagcttt gtcggtatat tgccagagaa tgacgaataa acaggccaat
    16321 ttttaataaa tgagctatct tttaagaata ccagtatgtt ttgagcggat tgtttattgt
    16381 aacaattaaa gagaaagaaa cgctgggcga aatacatatt attaaacaat aaatataact
    16441 gaggggaaga gctatgaaaa agtgggggct cgctattgtt gcactgatgt tatttaacca
    16501 aataacctat gcaagtcaaa gctggaatca atgggttgcc ggggtgcgtg aggaagcctt
    16561 acaacaaggg attccaccca gtttatttga tgaagccttt gccggcattc atgaaccaag
    16621 ccggaaaata aaaggttttt tacgctctca acctgaacac aggttaacgt tcatgaaata
    16681 tcgtaatacc agagcagaca attaccgaat tgtgattgga agaaaagagt acaagaaaaa
    16741 caaggaaata ctggaagaga ttgcccaaca atacggagtt aatccttgct ttattgtgtc
    16801 gttttggggt atggaaacca gttacggttc ctacatggga aatttcccgg taatcaatgc
    16861 gctggctact ttggcctatg attcaaaccg taaagacttt ttccgcaagg aattgtttct
    16921 cgctttacac atcctgaaag gtgggcatgt cagcctggct gatttcaaag gggagtgggc
    16981 tggcgcctct ggtcaacctc aatttttacc atccagctgg gtcaaatacg cggtcgacta
    17041 cgatggggat ggacgaaaag atatatggaa gagcaaaccc gacgtttttg cctccatagc
    17101 gaattacatg aaacaaaacg gctggcaggc cggagagccc tgggctattc aagtgaaact
    17161 tcccgccaag tttgatatga aattggaagg gaaaggcata gtcaaaccag tcagcgaatg
    17221 gaatgcttta ggtgtgcgca cggaaagcgg tgaacccctg ccctatcaaa atttgcaggc
    17281 cagtatcgta cagccttatg gtggcccgac cttcctggcg tttcccaact acaagatgat
    17341 cctacgttat aataactcca tttattatgc cggggctatc gggtatatgg ctgataaaat
    17401 ttgccagggt caatgatttg ttggagacat aaatatctac tgatgaattc cactggacag
    17461 gcgttcagtg gagttctcat aggccaagct ttttaagctt tataaatcat aggtaacgtg
    17521 agttatggat aaaatcagtt gttatctcga gccgctcggg ctgaggaggc atttatgccg
    17581 tctcgaagcc tagcatcgga ttttatgttt catgccaagg cttcgagacg atgcttaggc
    17641 atctcctcag cccgaacgta ccctgggtat cgacgggctg ttatatcctc tttagccata
    17701 actcacgtta ggtattaaaa tgaatcagaa atcctttcag tggtcagttg ttggcgcggg
    17761 acctgccgga attgctgcag taggtaaact attggattat gggattgcac cctctgaaat
    17821 attatggatt gatcctcatt ttaaagtggg tgattttggg cagctctggc ggcacgtttc
    17881 cagtaatact acggtcaagc tcttctcaag ttttctgcat gctgcaaact cattttccta
    17941 taaaaaagca ccctccacat ttcgtttaaa caacctggat cctgataata cctgcctgtt
    18001 gagtgacgtt gcggagccct tgcaatgggt taccagcgtt ctggtgaatc aggttattgc
    18061 agaagagact gtcattcaca gcttgtctct ttctggaggt tgctggactt tatgctctga
    18121 tacacaacaa taccgagcga aaaatgttat tttagcaaca ggggctgtcc cctccagcct
    18181 caactaccct ggtgttaatg tggtaccgtt tgaaattgca atcgataaac agcgtcttgc
    18241 ccatgttgtt gatacgaatg agacttacgg agtttttggc tcatcccact cggccattat
    18301 gattttacgc tctcttatcg aattaggcgt aaagaaagtg attaattttt atcgctcccc
    18361 ttgccgttat gccatcaaca tgggcaattg gattttattc gacaacacag gcttgaaagg
    18421 tgatacggct gcttgggcca ggaaacacat cgacggtgtc ttgcctgcca atcttgtccg
    18481 ttactaccca agcgaattaa atattgcacg ccatcttcca gaatgcgata aagtgattta
    18541 tgccgttggt tttgaaagac gtaaaaatat gaccattgat aattatgaac acgttactcc
    18601 taatcctcat gtgggcatta taggaccagg cttattcggc ttgggcatag cctatcctga
    18661 actcagtgtc gatccgtttg ggactattga gcatcaggtg ggattatgga agttcatggt
    18721 gtatttgtgt aaagtgctgc cggtctggtt taaatatcct gcctagagtt gggaaatgat
    18781 aattcaacac atagccactc ttcatcggct ggttttctac agactcgcaa gactctgtta
    18841 tattgacatg gttaggaaac gccaaggata aaaaaatgat aaagatatta atttatttag
    18901 gactgttttt aagcagtaat ttactcatgg cgaaaccatt gtcgcaattg gactctgcta
    18961 atttgctccc ctgttttaac atagagcaag cagaacgcat tggaaaacaa atcaataaac
    19021 tcttacagca tgaattttgc gaggaaaaca tcaatccaaa gaaatttgcc tctatcagtc
    19081 acaatatcct gcccaaaatt atgacagaaa catttttagg agtaacccct ccagaaaact
    19141 ggcagcaatt aagcgacgat attataaaaa actgcatcgc aaacaagaat ctatgcaaaa
    19201 aagcagctcg caaagagttg gaagaatgca tcaaaccgag aattcctttg atcctgatac
    19261 aatttggccc ctggcttgcc caaaattgtc cacaattgaa taagtctttg attgaacaat
    19321 ggccaaataa acaggccact ctcaaaaaga taattaatga aaacaaaagt gctgagtaat
    19381 cgaggcaggc ttaattacga gagttatgcc ggataaaaca acatttattt acctaattca
    19441 cctaacttca tcaaatataa cttaccgata tgatctacaa ccaggttctt aaaacgatcg
    19501 ttttatatac atgccaaata cgtcattgac ttacttttat ttaggatata tactttattc
    19561 atcaaagaaa aataagaata gcaatgattt ttattgaaac tccaattttt acagaagacg
    19621 tgaaggaatt attatctgat gaggagtatg ctgagtttca agagtatctt gctgataatc
    19681 ctttagctgg agacgtaatt cagcaaactg gcaaactggc aaactggcaa actgcgaaaa
    19741 gttcgatggt catttcaagg caaatgggaa gcgaggcggt gttagaatta tttattatta
    19801 tgtaactcct gcttcacaaa taagactctt acttatttat aaaaaaggta ttcaagatga
    19861 tctgactaca gatcaaaaga aaatgttacg gcaattaaat gaacggtggt aatcatggat
    19921 aaaaaattat ttgaacgatt atacgaaagt atgactcaga tgaacgaaat tattgatggt
    19981 gagcgtgttc cttcacgtga gttcgtagtg gatgctgttc atgtaaaaga aattagaaaa
    20041 aaaacaggcc taacccaaga aaaattttgt catttaattg atgtaagtat tggaacatta
    20101 agaaattggg agcaggggag aagagagcca acaggtcctg caaaagctct tcttcgcgca
    20161 ataaataaag atcctgaaca tgtattagca gcattagctg gttgataatt gatgttttaa
    20221 ctttctataa aaagtgcaga cagtgtcggc acaattcaaa gtttctctaa aggagctttt
    20281 aactcaaaat atagaaaacg agcttagcaa gcttatatga ccgataaaat ttgccagggt
    20341 cagtaaatag tattctgatg gctagataat aaatgatgaa aagttctttt gatgaaatga
    20401 ataaaagaac cttttttatt gagcgactct taaaaaagcc atttgcttta tcctgtgctt
    20461 ttggcaagca gtatggtcgc attcaggctt tgtttacatg ctaggtgtag ttttttcctg
    20521 aggcggttgt gggcttgata ccataggttt tattgaatag acgccacttg ggaaaaaaca
    20581 attgtcggca aggattgccc ctgtaatcag ctgggtaagc cgattggctt cggcacatct
    20641 cgaatcagtg gcaacctctt tcgctttttc atctttattt cgcataacaa tcctgtgaag
    20701 ttaatctttg cagaggacac tatgatggtt tcatgtcata caaacgaagc aaccgggtac
    20761 cgaacgaatc cttacaggaa aacgaagctt atggaaggcc aacaaggaac agggagtaaa
    20821 ttcataacgc cccctgtttc catgaaaata tttcaggggg caggacgatg aatcgtattg
    20881 gacaataagg ctataacgcg gtgacggttt aataatagtc tccgtattga ctcaattacg
    20941 ggcaagcaag gtctggcatt ggcccgacct tgcttaaatt tctaaaaaac acactattat
    21001 tcctaattag ttatagtata ctttaactaa acaatctttt tagtgttttt ttatgaaaat
    21061 ttctactcat gaattaattg cagtagtatc ccaatttaat ccctggtgga gaggtgaatc
    21121 cattcaggat ttacctactt ggcatagagc agcttaccaa gagttggaat tatggttaat
    21181 taaaccacct gtccccagag caatattttt gtctggagct cgacagatag gtaaaacaac
    21241 ccttttgtta caagctattg ataagctttt gaaagaaggg gtaaagccag gaaatatttt
    21301 gtatgtaact tttgatcatc cattaataaa aatgtctgat attgatgctg tattagaggc
    21361 atggagggaa cgagaaccta aaacaggtga tttagaatat atttttattg atgaagctca
    21421 attcatgcgg agttggggaa catggattaa acaccaagtc gatttttcaa agagtagaag
    21481 aatttttttt acgggatctg caacaccaat tatagaagca gatcaagagt caggggtagg
    21541 gcgttggcat actattcgtc taacaacact ctcattttat gaatatttac aaataaagaa
    21601 gattgatttg ccccagttac caactgttaa gaccttgcga gaattattcg agtggccaca
    21661 acaagaattt tataaggtta aagaattagc ggttcattat gtaggacatt ttcatgagta
    21721 tttattacga ggtggatttc cacaaacagc tcaagttgaa aatattaccc aggcacagcg
    21781 ccttttaaga gaagatataa ttgataaagt actaaaaaga gatatgacag cactgtttgg
    21841 tgttcgtcgt attttagagt tagagcaaac cttcctttat ctatgcatgc atgatggggg
    21901 attgctagat atgactgatc tttgcagtaa tcttgaagta aagagaccca caatacaaaa
    21961 ttatattttt ttgttggagg ctacaaatct catttatcgc ttacctccct ttggttacgg
    22021 taaagatatt ttgagagcaa aatataaaat ttatttagca gacgcagcta tagctccagc
    22081 tgtattactg aaagataaaa gtattctgga tgatcctgaa tccttaggta ttgccacaga
    22141 aacagctgtg tttaaacatc tatttgctcg atattactcg caaaatgtac ggtttagtta
    22201 ttggcgcggc accaaagacc atgaagtgga tgttgtagca cagattggtg atcaaataat
    22261 tccttttgaa gtcaaatatc gttcacaaca tacgaatgcc aaagcattga aaggattgtt
    22321 agaactatgt aagaaaaaaa gtattgctca tggttatgta gtaactaaat cgttagatga
    22381 cttcggtatt atgaaagccc taccagaaat taagacaaat attatgcaga tacccgcacc
    22441 attactttgt tactggatgg gagaatcaga attaaggcag acatttgggg tttaattagt
    22501 tgataactta atgccgtcaa ataatttatt gaacactgac gcaaaataac ttatggcaaa
    22561 tatttatccc tcaaaatgtt tctcaataag tcattgttac cttgaaccag ggtaagcttt
    22621 aattttctta aacaaaatgg agtatatagt cctctcttag atggaagctc tttcactgct
    22681 ttgctgagca gatatttgac gctcctcact gattaattca atccattttt taggtgtcat
    22741 gtcgttttgt atcaataagt tgatcgctgc actaggatat tgactttgtg taatggcaaa
    22801 ataaaagtaa gcggtcaatt tgcttctgca taaagcccaa ccactttttg cgacacattg
    22861 ttgcaaacta ggaaattcaa tttgatcttc tttgactaat tgttgcagct tttgaatcgt
    22921 gttagggatg catgcatcaa aaaataatgt ggtcccttgc tgtccccata cgtcacttaa
    22981 tataattctt tttaaaatgt tcaagtcaca aatttgttgc tcttgcgaaa taggtttctc
    23041 aattctatgt gttaccggtt gccctaacat ggaatgtgtc cattgttgat aataagctcg
    23101 accgtaaatt aatataccac ccaaaataaa atcaaaggca gttggggctg cataccaaag
    23161 agcagtgaag aaattagatt tgatgacgtc cactttgggg tagggatact gatggttatt
    23221 ggttttaatg atatgtttgc gatcgtattg catttttaaa ggttcatatt taaccaggga
    23281 tttagcttgg tattgattct gaccaatact tatcgtttct tccttcttcg gtactcctcc
    23341 atcgactatt gctaaatgaa agttatgatt taaaacatgt tcataaccca gaaaatgaca
    23401 atcaggattt ttagataagg tatttgctaa atgttgtcgc aatgcctccc cgactttaat
    23461 attaggatca taaaaatctg gatgtttggc taaattcatt acccaaaata cattgacttt
    23521 attcttttca ccagcaggaa tatctcgtaa catcattccc caacaatacc caataacttc
    23581 gtcgttttta tccttggcaa taaaacaaat agtctcttta taatgtaaca ttgaagatag
    23641 gacgatatcc cctataaaag gcaaatcgcc aaaatttgct ccatgggcta aagaatcgat
    23701 acgtttaatt tcccccattg ctttattaag ttcagcagta ttattgggat ctaaaatctg
    23761 aacttctttg aagccatagg gcttaccttc catcattttt aacgaaaaat taaaggtaca
    23821 ttcgccatct aactttttgt ggtgtttaat tttaagagga ttttgatttc tgcaatttaa
    23881 cagatctgtc cataattgat gaatgtaaag taatttttca tcatttggtg aggtatttcg
    23941 caaattgatt aattgttggg tgaaacgatg cacatattct gtatggagat aaatagcatg
    24001 gctactgaaa tcaacaacaa actctgccgt cattaatttt ttgatttcgg ataagtgata
    24061 ttcaacagga tctgtatatg attttactat tgcctctaat gaactccatt tgcgttcaag
    24121 tacatcgatt tttgaatacg acatctatat ttccttgtaa taaattttcg gagaaatctt
    24181 aacatggcaa tttacttggc caaatcctat tttgtcaata aagattaggc cctttttaaa
    24241 tttaaaagga gctatcttca tatggaaaaa ctataactct cgagacagga gttttcattg
    24301 tgctgtgttg acattagata gagatcacct gcgatggggg gagggccttg gatcggatcc
    24361 ctattgacac aaactttcta aaggaatact tgagaattta gagtacagat atctttcatt
    24421 gccagtttgg gcgtggctat gggaagatca acttatctcg aatgttgaag ttctcacgga
    24481 ttttcccaaa tcgcgaaatt gtttcaacac tgtcgaaaca attgtcttgg tcccacttcg
    24541 tgatgatttg ggttctaatg taatgaaccg tcttacccac aatcctttga tgatggatgg
    24601 tttgtttcag tgcgtgtaaa atattcaatt ttatcaataa tggatcccca tgagtatttt
    24661 tcgtagtgta ttaataacgt tactttttat ttcatccgca atggctgcaa ctcctgatca
    24721 ggtaacctat ttgccaggtt ggggtcccat taagaacaat caatatgctg gatattttcc
    24781 tgttaatcca aaagcgggat tattttattg gtttgtagaa tcaaataatc catctatgga
    24841 tgctcccatt gttttatggt tgaacggtgg cccaggggca gcaagtttat atgggttttt
    24901 tatggaaaac ggtccttatc aggtggataa aaatgggaaa ttaactgccc gcaaagattc
    24961 atggacaaaa gcagctaact atttggtaat tgaccaaccg gcaggagtcg gttactccta
    25021 tggttcctca aaatcttatg gcagtgaagg ggaagctatt gatcagttac aaggtgcatt
    25081 acagctcatt tttaaaaaac acccagagct ctatgggaaa cctctattct tagctggtga
    25141 atcttacgca ggaaaatact taccgcagtt agctattcgt cttctcaaag ataaaaatat
    25201 gaatctaaaa gggctattat taggcgatcc ttggattaac ccccggctac agcaaaaagc
    25261 gaatattgat tatgcctatt atcacgggct gattgacaac aaagcaagaa aaagagtgcg
    25321 agtcttatac gaaaactgtg ttaaagaaat tgataaacaa tcaccctcca catcaaaggc
    25381 aaacaagact tgtgaacaaa tacaagaatt tataaaacag gagagcggag gacttaattt
    25441 agctaatatt gcaacggggg ttgagccaga agataccaac atggtcaact atttaaatca
    25501 aaaagtagtt agagaagcgt tgcatattcc tgtgactgta tcggaattca aaacatttag
    25561 tacggcggcg gccaaaaaac tagaaatagg tgaacaagat tccgtggctg acttgtatcc
    25621 acaattgtta gcggctggca ttcgtatatt aatatataat gggctagaag atggaaaaga
    25681 ttcaaatttt ctaagtactg aactgctgct cgcttcgctc gattggcatg gcaaaaatgc
    25741 atttgcaaaa gcaccaactt gcatatggcg cactaacaat gaagtgagtg gatatgcgaa
    25801 aggagcggtt ggattaacgc aggttaaaat tcgtggtgca ggccatctag caccaattga
    25861 ccagccagca agagttttcg atttattcaa acattttata aatgataaac ccttatgcta
    25921 gatttggaga aagcttgctg cattgataaa ttgaattcac gaaagtaatt ttttaactaa
    25981 gcttaaccac tcaa
//
LOCUS       DACVWI010000024        25949 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.024, whole genome shotgun sequence.
ACCESSION   DACVWI010000024 DACVWI010000000
VERSION     DACVWI010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 25949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25949
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.024"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            12..1988
                     /locus_tag="JBH85_03750"
     CDS             12..1988
                     /locus_tag="JBH85_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAU0945306.1"
                     /translation="MNYRPDIDGLRAIAILLVLIYHGGLSLFPSGFIGVDVFFVISGF
                     LITTIIHESLNKNDFSFFDFYNRRLWRLQPVFVALIVVTTLLSVLFYLPDDLIEFSRS
                     ARKASLFISNLFFNKTTTGYFSPDTHQLPLLHTWSLSIEWQCYLVLPLAMYGLYRFLN
                     KGQVIYIVHGLAILFFLLALYYSQAAPAQTYYQFSSRIFEFLIGSCIALSPRIEFSIN
                     KSILVILGLSALFFIIYTATLDNILLGYPNWRTLFVCLATGLLIALGTNFPSLAIVNA
                     LSFRPLVFIGVLSYSLYIWHWVVFSILRYQNIEERSEVLFIVYGIVFVLAYLSWRYIE
                     KPTKKFRHIPFRYTVVILLLIPVLFSHLSSLVIKSHSGYPQRFNQELVRVYKQLKSYE
                     SPYRALCIDNTRADNAWKCKIGAKEQGGRTGLMIGDSFSNHYWGFMDVLGKAAGVSIL
                     AQGTSSCISLPGIYLYDWWHFKDKIYQDCYEQTEKYYRMIQKNHYDYVIIGQVWENYV
                     SAHIINQRGDDYSAELTKKRLADALDRALGVIISSGAKPVLIESTAVTHGNLHQCFFK
                     HIKLRQSYNSEECRFTLTSSDNETWLNQLFDNMRRKYPQLIIIDPKQVQCRDNVCYSD
                     LNGIPVYRDEGHITDYASYQLGYLYLREFENPLI"
     gene            complement(2039..2305)
                     /gene="yhbY"
                     /locus_tag="JBH85_03755"
     CDS             complement(2039..2305)
                     /gene="yhbY"
                     /locus_tag="JBH85_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HAU0945307.1"
                     /translation="MDTSFKQSLKAKAHHLKPVVLLGAKGLTEAILAETNVALLAHEL
                     IKVKINGAEKEDRMQMAEELCEQLHAELVQMIGNTLVLYRKNEE"
     gene            2285..3028
                     /gene="rlmE"
                     /locus_tag="JBH85_03760"
     CDS             2285..3028
                     /gene="rlmE"
                     /locus_tag="JBH85_03760"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HAU0945308.1"
                     /translation="MFKRRIHCDIPDNKMVNYCTFCWEKVVKFCIIGKIVLSLFVMNR
                     TKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGG
                     WTQYASEKMRGSGRLVALDILPMDALPNVEFILGDFREDNVLQELINLIPQRTLDLLL
                     SDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVKQARA
                     SFEKVVIRKPSASRSRSKETYLLAKGYNL"
     gene            3141..5060
                     /gene="ftsH"
                     /locus_tag="JBH85_03765"
     CDS             3141..5060
                     /gene="ftsH"
                     /locus_tag="JBH85_03765"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HAU0945309.1"
                     /translation="MNDMVKNLFLWLIIAIVLVSVFSNFGPRNSVAEKISYSQFLQEV
                     DQGMINSVTIEDNKIIKGVTKNNKRFVTYMPMQDNALLGELLKSKVDVSGQEKQQESF
                     LLHLFINWFPMLLLIGVWIFFMRQMQGGGGRGAMSFGRSRARLLGEDQVKVTFADVAG
                     VDEAKEEVKELVDFLRDPTKFQNLGGRIPRGVLLVGSPGTGKTLLARAVAGEAKVPFF
                     TISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHDERE
                     QTLNQLLVEMDGFEGNEGVIVVAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREQI
                     LKVHLQKVPVDSHVEVKAIARGTPGFSGADLANLVNEAALFAARANKRKVGMIELDKA
                     KDKIMMGAERRSMVMDDNEKKLTAYHEAGHAIVGLSVPEHDPVYKVSIIPRGRALGVT
                     MFLPEQDRYSHSKRRLESQLCSLFGGRIAEELIFGPESVTTGASNDIMRSTEIARKMV
                     TTWGLSALGPLTFGEEEEEIFLGRSVNKHKEMSDRTAQQIDDEVRAIIDRNYQRAKEI
                     LETNIDKLHLMAQSLIKYETIDTNQIQEIMSGKEPTPPEDWGSTKPMDKAESVNDAPA
                     KPINGETIENPAEGH"
     gene            5093..5968
                     /gene="folP"
                     /locus_tag="JBH85_03770"
     CDS             5093..5968
                     /gene="folP"
                     /locus_tag="JBH85_03770"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HAU0945310.1"
                     /translation="MNSEQFLGWLERKSQPPSSLVFEKPLIMGVLNVTSDSFYDGGKY
                     LSVDSACDQALKLIACGADLIDIGGESTKPGAPPVPLDVELSRVLPVIKQLRVLADVC
                     ISIDTNKPEVMEAAIDAGANVINDVYALRRDGALNVAAQLDVPVCLMHMKGEPRTMQE
                     NPSYPEGIMKELQHFFKERIDKCQKAGLNKNKLILDPGFGFGKRVKDNLKLIYHLNEL
                     RSFGLPILLGVSRKSTIGAVLNNEVEQRLIGSITLGIYAALKGTAIIRTHDVDETNQA
                     LTMINAIYQAAKEIG"
     gene            6032..7399
                     /gene="glmM"
                     /locus_tag="JBH85_03775"
     CDS             6032..7399
                     /gene="glmM"
                     /locus_tag="JBH85_03775"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HAU0945311.1"
                     /translation="MSQRKYFGTDGIRGHVGLSNINPEFVLKLGWAVGCVLANGARKK
                     VVIGKDTRVSGYMLESALEAGLSAAGVDVALLGPMPTPGIAYLTQTLRANAGIVISAS
                     HNLFEDNGIKFFSADGGKLPDSVELAIEAQLEKQLQTVPSAKLGKATRINDAAGRYIE
                     FCKSTIPSLSRLSNLKIVVDCANGATYHIAPNVFSELGADVVPIGIKPDGFNINQECG
                     STAPELLREKVIAVGADIGIGLDGDGDRVILVDSLGNLVDGDQIIYIIAKDRHQRGVL
                     HGGVVGTLMSNYGLELAITSLGVPFQRSKVGDRYVLETLREKDWKIGGETSGHIVCLD
                     KTTTGDGIVAALQVLSIMVKQNKALHELTAGIQLLPQTLVNLKTNNAALLASNPDVIQ
                     AVKNLEKHLNGEGRVLLRPSGTEPLLRVMVEGANASIVKQQAQMLCDDISQIDKKMTE
                     SLPST"
     gene            complement(7468..10923)
                     /locus_tag="JBH85_03780"
     CDS             complement(7468..10923)
                     /locus_tag="JBH85_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="interaptin"
                     /protein_id="HAU0945312.1"
                     /translation="MNEIILHLMNEISTLTPPINPLNLKQIFSSTLLPEGKAPVEVES
                     QLNLLLLIKKYVDEYSSLAEEQEEYKRKKHKLDEVMKKGEELQRKISDLAKKIEHAKN
                     ELNPLYKEIEPKANEVLSKQNPLAPPYKFPEYGEVQKSIVVGHYSYLFKTSKEIETTR
                     AKLKLVLLKNKWNALMADLSQFGIQPPVEEDAVDSLQKFIAAVELEIKKLTRACEKWD
                     ELQKRFAKQLSATDINKKETELEKQIELLLKDLGRIETVVTNHSLAPDLKAELTRKFQ
                     ESEDTQGLIQEYQNQIDGLLSNFNPSSWLSWYSDSNYSDNQQKLKNSVSFLQLLAQQK
                     ELKIKHHELVKQQELLIKAIPETPSNEEDISIYKKLVPDAIDLINEIPIESIPNFVLP
                     SGLSYDSSPADFYLVLLILMPKVSEKKEQFSQALEKLQEMPALGKQIQQLRSGYDLPI
                     TMDVQLPSLQEAEESKDSLNEEDPLKEELKSQIKLCQSYLETAKQIDLLMKDHGQTTN
                     EAKALIEQLRLISNQPLKNEDINSIKEDLSTLANQIQSLVSELNQLPLPNLSGEKIDP
                     PLEKQEIAVDKTIPLTVELMHPAQVIQIGNDSPIEKQQLDNEEETPVVLESLRPRPVI
                     HKESESITQKLQVDNGQEMPVVLDSTCTPQAIHKELESTTEKLQVDNGHEIPVVLEST
                     RSPQIIHTESESVGKKQHVEVEQEIPVTLELIRPSSMVEKDSVATVEKQQVTERQETP
                     IVLESTRLSPMVQKDTGLSGEKQHKEIEQEISVVTELTPHTQVVRQGSESSLEQQVPN
                     GQETLAVVKSSPSEPLRPSTPEVPAISRKPNGLSLFNGHDELSEDNILAFFDEAGNQI
                     SISSEEDSETFTVDRGKVISSGIDKAFKEKPVSTGHELDKLSNPQHQESAPSISPLPP
                     SSILLKQKLDSFHVQNMEYIKQHSEEIQLWYKGLYDAAQSSCVNEALGLKALHLLKDI
                     LFELKNQNDLSVLLAYKRMCPNPLQDIQNILRLKPALPIVDESIDEEQQLKNWPEELQ
                     KFHQQYVKLKKEHPLEAELFIQAIHSLISIKHLMELPDAKTSNREAMPLITQDPRYEP
                     LKRHRGFIRAWEYIEDFFRMLIGKLTGQDEYEYSKRPCFFKTRSHRLLEEVDTILHSM
                     APTSS"
     gene            11167..11916
                     /locus_tag="JBH85_03785"
     CDS             11167..11916
                     /locus_tag="JBH85_03785"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HAU0945313.1"
                     /translation="MRQKIVAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPS
                     IYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFF
                     HEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRD
                     CVVAYEPVWAIGTGKTATPEQAQKIHQFIRDLVGEINDSDAKHLTLIYGGSVNENNAK
                     ALFSMPDIDGGLVGGASLNAKQFVEIVKCIN"
     gene            11904..12227
                     /gene="secG"
                     /locus_tag="JBH85_03790"
     CDS             11904..12227
                     /gene="secG"
                     /locus_tag="JBH85_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HAU0945314.1"
                     /translation="MYQLILMIHVLIAVILIGLVLIQHGKGADIGAAFGSGASNTLFG
                     SQGTGGFLFKLTGGLAITFFITSLMLSYMVSTQNQKAGQLAIPQQTGAPVSSVPVPVE
                     KNNKK"
     gene            12298..12382
                     /locus_tag="JBH85_03795"
     tRNA            12298..12382
                     /locus_tag="JBH85_03795"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12332..12334,aa:Leu,seq:gag)
     gene            12407..12763
                     /locus_tag="JBH85_03800"
     CDS             12407..12763
                     /locus_tag="JBH85_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HAU0945315.1"
                     /translation="MLSQYLPVLVFIIVALILGAVMIGAGSLLSKHSPDSAKNSPYEC
                     GFGAFESSHIPFDVRFYLVAILFIIFDLETAFFFPWALALRKIGWFGFYAMMLFLGLL
                     VIGFIYEWKRGALEWE"
     gene            13013..13489
                     /locus_tag="JBH85_03805"
     CDS             13013..13489
                     /locus_tag="JBH85_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HAU0945316.1"
                     /translation="MAVAELEKKGFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMH
                     VGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSC
                     ANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRKPVLEA"
     gene            13512..14195
                     /locus_tag="JBH85_03810"
     CDS             13512..14195
                     /locus_tag="JBH85_03810"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HAU0945317.1"
                     /translation="MTKNEYLIEKLQADLANHITELTSAYGEVTIECEVQNLLPVMIE
                     LRDREEFSFDQLIDLCGVDYLHYGDYDWETESATEHGFSRGVERQEAKAYAVNKPRFA
                     VVYHLLSTKKNHRLRVKLFVEESHLIVPSVHHLWKSANWFEREAYDLYGILFDGHPDL
                     RRLLTDYGFIGHPFRKDFPLSGEVEMRYDAKLQKVIYAPVDIVPRIVVPKVIRNDNRY
                     IGNEGSKND"
     gene            14173..15441
                     /locus_tag="JBH85_03815"
     CDS             14173..15441
                     /locus_tag="JBH85_03815"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HAU0945318.1"
                     /translation="MKVAKMIELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPH
                     IGLLHRATEKLAETKPYIQSIGYMDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAKYI
                     RTMFDEVTRILNHLLWLGATALDIGAMTVFLYCFREREDLFDCYEAVSGARMHATYYR
                     PGGVARDLPDTMPQYKPSRWHSEREIEKKNHNRQGSLLDFLWDFTERFPHCVDEYETL
                     LTDNRIWKQRTVDIGVVSPENALQWGFTGPMLRGSGIAWDLRKKQSYAAYDRVEFDIP
                     VGKTGDCYDRYLVRVEELRQSNRIIRQCIEWLRKHPGPVKVDDYKVSPPRRVVMKHDM
                     EALIHHFKLFTEGFCLPRGEVYSSVEAPKGEFGIYMVSDGANKPYRLKIRAPGFAHLS
                     SFDDMVRGHMLADGVAILASQDIVFGEIDR"
     gene            15502..16005
                     /gene="nuoE"
                     /locus_tag="JBH85_03820"
     CDS             15502..16005
                     /gene="nuoE"
                     /locus_tag="JBH85_03820"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HAU0945319.1"
                     /translation="MSANSAKILSQLMPANRMLDIDHWISKYPKDQKQSAVMSALRIV
                     QEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMYEHKPVGRHLINVCTNISCMLRD
                     SAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACVNAPMMQVDKDYHENLTAESID
                     KVLEQYQ"
     gene            16015..17301
                     /gene="nuoF"
                     /locus_tag="JBH85_03825"
     CDS             16015..17301
                     /gene="nuoF"
                     /locus_tag="JBH85_03825"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HAU0945320.1"
                     /translation="MFAMVELNQVCYRTFHLPESWSLSTYESIGGYSAWRKILKEQTS
                     PQLIIEELKTSALRGRGGAGFPTGLKWSFMNRNSPVQKYVVCNSDEGEPGTCKDREIL
                     TLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPFERTEAAIKEAYDAGLLGKNILGS
                     GFDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFKPPFPANYGLYGKPTTINNTET
                     FASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPGNYEIPLGTPFKTLLDLAGG
                     VIKGRKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAGSGLGSGAVIIMDETTCMVD
                     ALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEPGDVEKLVNVANNIEGRT
                     ICALGEAAAWPVQSFVKHFYDEFEYFIKHKRSIVAA"
     gene            17318..19669
                     /locus_tag="JBH85_03830"
     CDS             17318..19669
                     /locus_tag="JBH85_03830"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HAU0945321.1"
                     /translation="MATIEIDGKTFEAENGKMIIEVADEAGIYIPRFCYHKKLSVAAN
                     CRMCLVEVENGRKPVPACATPITNGMKVFTKSEQAIHSQKVVMEFLLINHPLDCPICD
                     QGGECELQDISMGFGADKSEYTETKRAVDDENLGTLISTEMTRCIHCTRCVRFGEEIA
                     GVRELGATGRGEKTQIGTYVEHSMTSEVSGNIIDLCPVGALTSKPYRFKARAWELTQH
                     DSVAPHDCLGSNVHIHTRNNKLMRVVPRENESINETWLSDRDRFSYLGLNAVSRASKP
                     QIKKNGQWEAVDWETALKFAAEGISRVIKQHGPEQMAAFASSSSTLEEMYLLQKLMRE
                     LGVQNLDHRLQQIDFRDQAFLPTTPVSTLPYAEIDHQHSILLIGCNIHREVPLAGTRV
                     RKAFRNGAKIYALNPVDFDYHFDLSGRVIISPLEMPMQLAKLALALTTELASLPEEVQ
                     KLLIGLEVDKQTKQIAQSLKEEKACLITGAIVENHPEASLLRTLVAIVQKLSGAKLVR
                     LTTGANSAGACIAGMLPHRTVAGKSIAEPGFNVQEALNSKLKGYLLMGVEPGYDFANP
                     AGARQSMLAAEFVVLLSAYEHESMHDYADVILPIAPYAETSGTYINIDNTWQTVKGAM
                     LPFGESRPAWKVLRVLGNLLHCKKFDYTSTEDILEEVKEAVSMTMEHEYEPYYPESLP
                     VINQSLVRVGEWPLYRIDAITRNAKELQLCAASESACIRIHPSTADRLKLEEIATVSQ
                     GDIEITLPLKRDERIAVDVVWVANAMPETVDLGHSFAAITIKR"
     gene            19682..20704
                     /gene="nuoH"
                     /locus_tag="JBH85_03835"
     CDS             19682..20704
                     /gene="nuoH"
                     /locus_tag="JBH85_03835"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HAU0945322.1"
                     /translation="MLHTIGILIWIIIKILVIVVPLLISVAYLTYAERKVIGYIQVRI
                     GPNRVGLKGLLQPFADLLKLITKEIIVPTRSNKYLFVIAPLFALVPSLVGWAVIPFQE
                     GIVLANINAGVLYLFAMSSLGVYGVLIAGWASNSKYAMFGALRSTAQTVSYEIAMGFA
                     LVGVLLAAGSMNLTDIVNSQKGGMLHWWFIPLLPLFLVFWISGIAETNRAPFDLAEGE
                     SEIVAGFHVEYSGIGFALFFLSEYASMILISTVLAILFMGGWLSPFEGITFLDQIFFI
                     VPGFVWLLLKISFFLFVYLWVRATFPRYRYDQLMRLGWKVLIPVTIVWLIVTALMVVA
                     HVKPWF"
     gene            20723..21223
                     /gene="nuoI"
                     /locus_tag="JBH85_03840"
     CDS             20723..21223
                     /gene="nuoI"
                     /locus_tag="JBH85_03840"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HAU0945323.1"
                     /translation="MKKVYHYIIHYVRTYLLLELLAGLWLTVKYFFRKKITVQFPEEQ
                     TPLSPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIESEQRDDGSRRTTRYDID
                     MFKCINCGLCEESCPVDSIVVTPIHHYHISERGQNIMTKEKLLAVGDLMESQLAADRA
                     ADEKYR"
     gene            21235..21894
                     /locus_tag="JBH85_03845"
     CDS             21235..21894
                     /locus_tag="JBH85_03845"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HAU0945324.1"
                     /translation="MHEWVIQAIFYVFALLTVLSAVMVISQNNPVRCVLFLVLTFFTS
                     AVLWVLAEAEFLALILILVYVGAVMTLFLFVVMMLNIDIESMKSHLIKYLPFGLIIVA
                     LLTGLLMVAIPKDLFKNSVQTQEKPLSVNSQLMDLSTEDGLVTPEKATSNTEKLGMVL
                     YTDYILAFEIAAVILLVAIVSAITLVHRGAIRSKRQDITQQIMTRRAERVKLISMKSE
                     K"
     gene            21912..22217
                     /gene="nuoK"
                     /locus_tag="JBH85_03850"
     CDS             21912..22217
                     /gene="nuoK"
                     /locus_tag="JBH85_03850"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HAU0945325.1"
                     /translation="MIPVYDYLVLGVILFGLSLVGIMLNRKNIILLLVCVELMLLAVN
                     TNFIAFSHYYNEVGGQVFVFFILTVAAAEAAIGLAIVMLLYRNRGNIDVDKMNHLKG"
     gene            22222..24195
                     /gene="nuoL"
                     /locus_tag="JBH85_03855"
     CDS             22222..24195
                     /gene="nuoL"
                     /locus_tag="JBH85_03855"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HAU0945326.1"
                     /translation="MSIQQVCLVIVLTPLVGSAIAGFFRNQIGRVGAHTVTILGVAIS
                     LACSIFLAWGLFSGSIPNTNSLVYHWASGGALIPYEFNIGFLIDPLSVVMLVIVNFVS
                     LLVHVYSIGYMADDDGYQRFFSYISLFTFMMLMLVSANNFLQLFFGWEGVGLVSYLLI
                     GFWYQKESAIEGSLKAFLVNRVGDFGFVLGIGLIFAYSGSLDYEKVFTSANYLASQNI
                     ELFSGYSWSLITVICLLLFVGAMGKSAQVPLHVWLPESMEGPTPISALIHAATMVTAG
                     VFMIARISPLIELSTAALSTVLVIGATGALFTGILALVMNDIKRVVAYSTLSQLGYMM
                     VAMGASAYSAGMFHLLTHACFKALLFLGAGSVIIGMHHEQDMRKMGGLWNKMPITYVT
                     YVIGSLALCAFPPFAGFYSKDTIIEAAQLSQIPGSSYAYFCVTAGAMVTALYTFRSLF
                     MTFHGKPRMDEHTLSHLHESPWVVWLPLVLLAIPSIILGYVLYMPILFDTPSLLGSSI
                     FVLPEHNVLAELAHEVSSPFASAVHAIYSLPFWITVLGAVIAWICYIAVPSIPGYLAR
                     YFSIIYSILLNKYGFDRFNELFFVKGARGLGIAFYKIGDQKLIDGAVVNGSGRLVRWF
                     SGKGRKIQSGYIYHYATVMVFGLLAFLCWLILD"
     gene            24211..25716
                     /locus_tag="JBH85_03860"
     CDS             24211..25716
                     /locus_tag="JBH85_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HAU0945327.1"
                     /translation="MHYLLNLLIWLPILGGVFVLLTGDDKNPNVSRYLTLFTILLCLV
                     LCIPLVKGFDLQSFGMQFIEEIPWMPALGINYTLGIDGLSLLLIVLSIFTNLIVILAT
                     WDSISKKVSQYLSAFLIMQGLLVGIFSAMDAIVFYIFWEATLIPMYLIIGIWGSDNRV
                     YAAIKFFLYTFLGSVLMLASFLYMGYIAGSFKIETFYAIKLGMTAQTLIFIAFFLGFA
                     IKIPMFPVHTWLPDAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACSKYAPLM
                     VALSLIAVVYIGLIAIIQKDMKKLIAYSSISHMGFVTLGCFAIFAIARHGGLSNAGLI
                     LEGAIVVMISHAFVSSAMFAGVGFIYDRMHTRQLADFGGIVNTMPIFASFFMLFAMAN
                     AGLPGTSGFVGEFMVILGSIKAGFWVAFWAATTLIIGAAYTLWMYKRVIFGPVANKKV
                     AALKDISGFELSAYVLLAIMVIALGVYPKPMLEFVHQTVSHTLALADKSKL"
     gene            25740..>25949
                     /locus_tag="JBH85_03865"
     CDS             25740..>25949
                     /locus_tag="JBH85_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone oxidoreductase subunit N"
                     /protein_id="HAU0945328.1"
                     /translation="MQSSSLARLNMMTLLENIHVAIPEMIILITACLALLSDLFFRHK
                     LKSIAFYISCVGIIVSAAVSFVFIGS"
BASE COUNT         7353 a         4429 c         5743 g         8424 t
ORIGIN      
        1 gagtaagtgg catgaattat agacccgata tagatggatt aagggccatc gcaattttat
       61 tggtcttaat ttatcatggg ggcctctcgc tttttccatc agggtttatc ggtgttgatg
      121 tattttttgt tatatcaggt tttctcatta ctactattat ccatgagtca ctgaataaga
      181 atgatttttc attcttcgat ttttataatc gaaggttatg gcggttacag cctgttttcg
      241 ttgctctgat cgtggtgaca accctactaa gtgtattgtt ttatttgcct gatgatttaa
      301 ttgaatttag tcgtagtgcg cgtaaagcat cgctgtttat ttccaacctg ttttttaata
      361 aaacaaccac cggatatttt tcacccgata cccatcaact tcctttgctg catacctggt
      421 ctctttcaat tgagtggcaa tgttatctgg ttttgccact ggcgatgtat ggcttatatc
      481 ggtttctaaa taaagggcag gttatctata ttgtgcatgg gttggccatt ttattttttt
      541 tgctggcttt gtactactca caggcggctc ctgcccaaac ctattatcaa ttttccagtc
      601 gtatttttga gtttttaatc ggttcttgca tcgctttaag ccctcgaatt gagttctcaa
      661 tcaataagtc aattttagtt attttaggct tatccgcatt attttttata atttataccg
      721 ctacactgga taatattctt cttggatatc ctaattggcg tacacttttt gtgtgtctgg
      781 caacgggttt gttgatagca ttaggtacaa attttccttc acttgctatt gtaaatgctc
      841 tctcttttcg accattagtg tttataggag ttttatctta ttctctttat atttggcatt
      901 gggttgtctt ttcaatttta aggtaccaaa atatcgaaga gcggtctgag gttttattta
      961 tagtttatgg cattgttttt gttttagctt atttatcctg gcgatatata gaaaaaccga
     1021 cgaaaaaatt cagacatatt ccttttcgtt atacggttgt gattttattg ctgatccctg
     1081 ttttattttc tcatttaagc tctttagtta ttaaatctca ttctggatat ccacaacgat
     1141 ttaatcagga gctggttagg gtttataaac aattaaagag ttacgaaagc ccatacagag
     1201 cgttatgtat agataatacc agggcagaca atgcgtggaa atgcaaaata ggagcaaaag
     1261 agcaaggtgg caggactggc cttatgatag gtgattcttt ttccaatcat tattgggggt
     1321 ttatggatgt gttagggaaa gctgccggtg tttcaatatt ggctcaagga acctcttctt
     1381 gtatttcctt accaggcata tatctttatg attggtggca tttcaaagat aaaatatatc
     1441 aggattgtta tgagcaaacg gaaaaatatt atcgcatgat tcaaaagaat cattacgatt
     1501 atgtaattat aggtcaagta tgggaaaatt atgtttcagc ccatattatc aatcaacgtg
     1561 gcgatgatta ttctgcagaa ttaaccaaaa agcgtttggc agatgcctta gacagagcac
     1621 ttggcgtgat aatatcttct ggagcaaaac ctgtattaat cgaatcaacc gcggtaacgc
     1681 atggaaattt acatcaatgc ttttttaagc atattaaatt aagacaaagt tataactcag
     1741 aagagtgccg ctttacttta accagttcag ataatgagac ttggctaaac caattgtttg
     1801 ataacatgcg aagaaaatac cctcaattga taataatcga tcctaaacaa gttcaatgtc
     1861 gcgataatgt ttgctattcc gatttgaacg ggattccagt atatcgtgat gaagggcata
     1921 ttactgatta cgcttcatac caactgggtt atttatattt gcgggagttt gaaaatcctt
     1981 tgatttaaaa aggttggttt gctttgattc cccagactac aaaacgattt tacaaatttt
     2041 attcttcatt tttacgatac agaaccagtg tatttcctat catctgaact aattcggcat
     2101 gcaattgttc acaaagctcc tcagccattt gcattctgtc ttccttttca gccccattaa
     2161 ttttgacttt aattaattca tgtgctaaca aggctacatt cgtttctgcc aatatagctt
     2221 cagttaagcc tttggcgcca aggagcacaa cgggctttaa atgatgagcc ttggctttaa
     2281 gtgattgttt aaaagacgta tccactgcga tatcccagat aataaaatgg tgaattattg
     2341 cacgttttgc tgggaaaagg tagtaaaatt ctgtatcata ggaaaaattg ttttatcttt
     2401 attcgttatg aatcgtacta aaagcagtaa acgttggctg caagagcatt ttgatgacgt
     2461 ttatgtaaaa aaagcgcagg ctgaaggata tcgaagtcga gccgtatata aactcaaaga
     2521 aatagatgac aaagagtcac tcattaaacc aggcatgaca gtggttgatt taggggctgc
     2581 tcctggtggc tggacacaat acgcctcaga aaagatgaga ggaagcggtc gtcttgttgc
     2641 attagatatt ttacccatgg atgctttgcc taatgtggag tttatccttg gggattttcg
     2701 tgaagataat gtcttgcaag aattaattaa tttgattcct caaaggactt tagacttgtt
     2761 attatcggat atggccccaa atatgagtgg aagctcagca atagatattc caagagccat
     2821 gtatctggta gagctggctt ttgatttcgc ggaaaaaatg ttaaaacccg gtggtaatat
     2881 gctagttaaa atttttcatg gctcgggttt tgatgaatta gtcaaacagg cacgagcgtc
     2941 ttttgaaaaa gtggtaatcc gtaagccatc cgcttcaaga tctcgttcaa aagaaaccta
     3001 tttgctggca aagggctata atttatagta gttttatata tatttaaaat atgcttggcg
     3061 ttgttttgga tgatatgagc tgtgcaagag ctattttggg tctcgcaaca aaattgtaag
     3121 taactaacga ggttaataca ttgaacgaca tggttaaaaa tttatttttg tggctgataa
     3181 tagcgatagt tcttgtctct gttttcagta attttggtcc tcgtaactca gttgctgaga
     3241 aaatttctta tagccagttt ttacaggaag tggatcaagg gatgattaac tctgttacga
     3301 ttgaggataa caaaatcatc aagggcgtaa ccaagaataa taaacgcttt gtcacgtaca
     3361 tgccgatgca agacaatgct ttgttaggcg aattgttgaa aagcaaagtc gatgtcagtg
     3421 gtcaggaaaa acaacaggaa agtttccttt tgcatttatt tattaactgg ttcccaatgt
     3481 tgttattgat aggtgtatgg atatttttca tgcgccaaat gcaaggcggc ggtggtcgcg
     3541 gcgcaatgtc tttcggcaga tcaagagctc ggctattagg tgaagatcag gttaaagtca
     3601 cctttgcaga tgttgcaggt gttgatgaag ccaaagaaga agtgaaagag cttgtcgatt
     3661 ttttacgtga tccaacaaag tttcaaaatt tgggtggacg cattccccgc ggtgttttgc
     3721 tggtcggttc ccctggtaca ggtaaaacat tattagccag ggcagttgcc ggggaagcga
     3781 aagtcccttt ctttaccatt tcaggttctg attttgttga gatgtttgtt ggggtcggtg
     3841 cgtcccgagt gcgtgatatg tttgagcaag ccaaaaagca tgcgccatgt atcatcttta
     3901 tagatgaaat cgatgcagta ggtagacaca gaggcgccgg cttgggtggc ggtcatgatg
     3961 aacgcgagca aacacttaac caattgcttg ttgaaatgga tggatttgaa ggtaatgaag
     4021 gagttattgt cgtagcggca actaaccgtc ccgatgtttt ggaccccgcg cttttacgtc
     4081 ccggccgctt tgatcgtcaa gtcgttgttc ctttgcctga tatcagaggt cgtgagcaaa
     4141 tattaaaagt tcatttacaa aaggtccctg tagatagcca tgtagaagtg aaagctattg
     4201 cacgcggtac cccaggtttt tcaggagcgg atttagccaa tcttgttaat gaagcggcat
     4261 tatttgctgc cagggctaat aaacgcaaag tgggtatgat tgaactggat aaagcaaaag
     4321 ataaaattat gatgggggct gaaagacgct ccatggtaat ggatgataac gagaaaaaac
     4381 tcaccgcata tcatgaagca ggtcatgcta tcgttggtct gtcagttcct gagcatgatc
     4441 cagtttataa agtatcaata attcctcgag gccgagcttt gggtgtaact atgtttttac
     4501 cagaacaaga cagatatagt cacagcaaac gccgtttgga aagtcaatta tgcagtctgt
     4561 ttggtggtcg aattgcagag gaattaattt ttggtcctga aagtgtgaca acgggtgctt
     4621 ccaatgacat tatgcggtct actgagattg ctcgcaaaat ggttacaact tggggcttat
     4681 ctgctttagg tcctctaact tttggtgagg aagaggaaga aatattttta ggacgctcag
     4741 tgaataaaca taaggagatg tccgatagaa cagcacagca aattgatgac gaggttcgtg
     4801 ctattattga caggaactat caaagagcaa aagaaatatt ggaaactaat atcgataaat
     4861 tacatttaat ggctcaaagc ctcatcaaat acgaaacgat agacaccaat caaattcaag
     4921 aaattatgtc tggtaaagag cctacccctc cggaggattg ggggtcaaca aaaccgatgg
     4981 ataaggctga gtcggttaat gatgctcctg caaagcctat taatggcgaa acaatagaaa
     5041 atccggcaga aggacattaa ttttatcagt agttatttat cgagagtacc ctgtgaattc
     5101 tgaacagttc ctcggttggc ttgagcgaaa gagccaacct ccttcctcct tggtttttga
     5161 aaagccatta attatgggtg tgttaaatgt tacctcggac tcattttatg atggtggcaa
     5221 gtatctgtct gttgatagcg cctgtgatca ggccttaaaa ttaattgcat gtggagctga
     5281 tctcattgat attggtgggg aatcaaccaa acctggtgct cccccagtcc ctttagatgt
     5341 tgaactatca agagttcttc ccgtaatcaa acaacttcgt gtcctcgcag atgtgtgtat
     5401 ttctattgat actaataagc cagaggtgat ggaagcggca atcgatgctg gtgcgaatgt
     5461 tataaatgat gtttatgctt taagaaggga tggtgctctg aatgttgctg cgcagttaga
     5521 tgttcctgtt tgtttaatgc acatgaaagg agagccgcga actatgcaag aaaatccttc
     5581 ttacccagaa ggaataatga aggaattaca gcattttttt aaagagcgca tcgataaatg
     5641 ccagaaagct gggctgaata agaataaatt aattcttgac cctggctttg gttttggaaa
     5701 gcgcgttaaa gataacctaa aattaattta tcatctgaac gaattgcgtt cttttggatt
     5761 gccaattctt ttgggcgttt cacgcaaaag cacaattggt gctgtattga ataatgaagt
     5821 tgagcaacgt ttgattggaa gtattacgct aggaatatat gctgctctta aaggcactgc
     5881 aattatcagg acacatgatg tggatgaaac gaatcaagca ttaactatga ttaatgcaat
     5941 ttatcaagct gctaaagaaa tcggttaata gctcatgaaa tgatcagaag acaactgaga
     6001 ttagaaaaat taaataataa ggtaggtaag gatgagtcaa cgtaaatatt ttggtacgga
     6061 tggaatacgg ggtcacgttg gattatcaaa tattaaccct gaatttgttt taaaattagg
     6121 ctgggcagta ggctgcgttc ttgcgaacgg agcgaggaaa aaggtagtga ttggtaagga
     6181 caccagagtg tctggctata tgttggagtc ggctttggaa gcaggtttgt ccgcagctgg
     6241 agttgatgtg gcattattag gaccaatgcc tactcctgga atagcctatc taacacaaac
     6301 attgagggct aatgcaggca tcgtgattag cgcttctcat aatttatttg aagacaatgg
     6361 cattaaattt ttttctgctg atggaggaaa acttccggat agtgtagagc ttgcaattga
     6421 agcccaatta gaaaaacagt tgcaaactgt accttcagcc aagctgggta aagcaacacg
     6481 tattaatgat gcagcgggtc gttacataga gttttgtaaa tctacgattc cttccctatc
     6541 tcgactatcc aatttgaaaa tagttgtgga ttgcgccaac ggggcaacct atcatatcgc
     6601 cccaaatgta ttctctgaat tgggtgctga tgtagttcct ataggaatta aaccagatgg
     6661 ttttaatatc aatcaagaat gtggttcgac agcgcctgaa ttattaagag aaaaggtgat
     6721 tgctgttggg gctgatattg gtattggttt ggatggagac ggggatcgag ttattttagt
     6781 ggattcactg ggaaatctcg tagatggcga tcaaattatt tatatcattg ccaaggacag
     6841 acaccaacga ggagtactgc atggaggggt cgtaggcacg ttgatgagta attatggtct
     6901 tgaattagca attacctcat tgggggttcc ttttcaacgc tcaaaagtag gtgacaggta
     6961 tgttcttgaa acgctaagag agaaagattg gaagattgga ggtgaaactt ctggacatat
     7021 tgtttgtttg gataaaacaa caacaggtga tggaattgta gcagcactgc aagttctttc
     7081 aatcatggtg aagcaaaata aagcactgca tgagttaact gcaggtattc aattgttacc
     7141 tcaaacttta gtgaatttaa aaacgaataa tgctgccttg ttagcctcta atcctgatgt
     7201 aattcaggcg gttaaaaatt tggaaaaaca tcttaatgga gagggtagag tgttactcag
     7261 accttctggc actgagcctt tactgagagt tatggtggaa ggtgctaatg catcgatagt
     7321 caagcaacaa gcacaaatgt tatgtgatga catcagtcag atcgataaaa aaatgactga
     7381 gagcctaccg tccacttgag catctgtctt tttaagttct aatgcagggg ctttttcaaa
     7441 agcccctctg tttcacagta taaggtatta actacttgtt ggagccatgg agtggagtat
     7501 tgtgtcaacc tcttcaagta atcggtgaga tcttgttttg aaaaaacaag gcctttttga
     7561 atactcatat tcatcttgcc ctgttaactt acctattaac attcggaaaa aatcttcaat
     7621 atattcccat gctcttataa atcctctatg ccgttttaaa ggttcatatc ggggatcttg
     7681 agtaatgaga ggcatggctt ctcggtttga agtttttgca tcagggagtt ccatcaaatg
     7741 tttaattgaa ataagtgaat ggattgcctg aataaataat tcagcttcca atggatgttc
     7801 ctttttcaat tttacatatt gctgatgaaa tttttgcaat tcttcaggcc aattctttaa
     7861 ttgctgttct tcatcaatcg attcatcaac tataggcaga gcaggtttta agcggagaat
     7921 attttgtata tcttgcaatg ggtttgggca catgcgcttg taagctagta atacagataa
     7981 atcattttga ttttttaatt caaacaagat gtcttttaaa agatgaagtg ctttaagacc
     8041 caatgcctca tttacacaag aactttgcgc tgcatcatat aaacctttat accatagctg
     8101 tatttcttct gaatgttgct ttatatattc catgttttgt acatgaaatg aatctaattt
     8161 ttgcttaagc aggatagaag atggtggtaa aggggagatg ctaggggcag attcctggtg
     8221 ttgaggattt gataatttat ctaactcatg gcctgtagaa acaggctttt ctttaaatgc
     8281 tttatcaatc cctgaggaaa ttacttttcc cctgtctacg gtaaacgtct cagaatcttc
     8341 ttcagatgag atgctaattt gattaccagc ctcatcaaaa aaggctaaaa tattatcttc
     8401 tgataattca tcgtgaccat taaataatga caagccattt ggtttcctgg atatagctgg
     8461 aacttcaggg gttgatggtc tcaatggttc cgatgggctt gatttgacaa cagccagtgt
     8521 ttcttgtccg ttgggtactt gttgttctaa actggactca gagccttgcc gaaccacttg
     8581 ggtgtggggt gttaattccg taacgacaga tatttcttgt tctatctctt tatgttgctt
     8641 ttcgccagaa agcccagtgt ctttctgaac cataggagag agtcgtgttg attcaaggac
     8701 gattggtgtt tcctgtctct cagttacttg ctgtttttct acagtagcca cggaatcctt
     8761 ttcaaccata gaagagggtc gtattaattc cagtgtgact ggtatctctt gctctacttc
     8821 tacatgctgt tttttaccaa cagattcaga ctcagtatga atgatttgag gagagcgtgt
     8881 tgactcgaga acaaccggta tttcgtgtcc attgtctact tgcagttttt cagtggtaga
     8941 ttcaagttcc ttatgaatgg cttgaggagt gcatgttgaa tccagaacaa ccggcatttc
     9001 ttgtccattg tctacttgca gtttttgggt gatagattca gattccttat gaatgactgg
     9061 acgggggcgt aatgattcca gaacaaccgg cgtttcttcc tcattgtcta gctgctgttt
     9121 ttctatggga gaatcattgc ctatctgaat tacttgggca gggtgcatca attccacagt
     9181 aagagggatt gttttatcta ctgctatttc ctgtttttcc aatggaggat caattttttc
     9241 accggacaga ttaggcaaag gtaattgatt taattcagac acaagggatt ggatttgatt
     9301 ggcaagagta gataaatctt ctttaataga gtttatgtct tcgttcttta gtggttgatt
     9361 tgaaattaaa cgtaattgct caataagtgc ttttgcttca ttggttgttt gtccatgatc
     9421 tttcataagc aaatcaattt gcttggctgt ttcaagataa gattggcata gtttaatctg
     9481 gctttttaac tcttctttaa gtggatcctc ttcattcaat gaatctttac tttcttcagc
     9541 ttcttgcaaa cttggaagtt gtacatccat agttataggt aaatcgtatc cacttcttag
     9601 ttgttgtatt tgtttgccca gagcaggcat ttcttgaagt ttttccaacg cttgtgaaaa
     9661 ttgttccttc ttttccgaaa cttttggcat gagaatgaga agtaccaaat aaaaatcggc
     9721 cggcgaagag tcataagaaa ggccacttgg taaaacaaaa tttggtatac tttctattgg
     9781 tatttcattt atcaggtcaa tggcatcagg aactaatttt ttataaatag atatatcctc
     9841 ttcatttgaa ggagtttctg gtatcgcttt aatcaacagt tcttgctgtt tcacaagttc
     9901 atgatgtttg atttttagct ctttttgttg agctaataat tgcaggaagc taactgaatt
     9961 cttaagtttt tgctgattat cagaataatt agaatccgaa taccatgaaa gccaggaaga
    10021 tgggttaaaa ttagataata atccatcaat ctggttttgg tattcctgta tcaatccttg
    10081 agtgtcttca ctttcttgaa atttcctggt taactctgct tttaaatcgg gtgccaggga
    10141 gtggttagtt actacggttt caatacgacc caggtcttta agcaatagtt caatttgttt
    10201 ttctagctca gtctcttttt tattaatatc agttgcagat aattgtttgg cgaatcgctt
    10261 ttgcaattca tcccattttt cacaagcgcg agttaatttt ttaatttcca attcaactgc
    10321 agctataaat ttttgtaaac tatcaacagc atcttcttcc acagggggtt gaatgccgaa
    10381 ctgagacaaa tctgccatta aggcattcca tttatttttc agcaaaacca gctttaattt
    10441 ggcacgtgta gtttctattt ccttactggt tttgaagaga taactgtagt gcccaaccac
    10501 gattgatttt tgaacctctc cgtattcagg gaatttataa ggaggcgcta atggattttg
    10561 tttggacagg acttcgttcg ctttaggctc gatttctttg tataaaggat ttaattcatt
    10621 ttttgcgtgc tcaatttttt tagccaaatc agaaattttt ctttgcagtt cttctccttt
    10681 tttcatgacc tcatctagtt tgtgtttttt tcttttatac tcttcttgtt cttcagctaa
    10741 actggaatat tcatcaacat attttttaat taacaataaa agatttaact gggattcaac
    10801 ttcaacagga gcttttcctt ccggcagtag ggttgaacta aatatttgct ttaaatttaa
    10861 ggggttaatt ggtggagtca aggtagagat ttcattcatt aagtgcagta tgatttcgtt
    10921 cattataaaa ccctcctggt taaatcatag taggattcta tcgaaatcaa accactaagc
    10981 aagtagaaaa atgtattttt tgcaaaaaaa atgaataatt aattctgaaa aaaaacatag
    11041 ataaagctac acatctgagt gaagtttcgg tatattgcac agctgcacac tatcagttgt
    11101 ttactgatag gctggaaata atagaaagga ttttgtccgc ctatactaga aattattgga
    11161 gggagtgtga ggcaaaagat agttgctggt aactggaaaa tgaatggcca gattcaacag
    11221 gtgactgaat tggtttcgca aattgaggaa ttaattggct ttgattgcgc agcacaggtt
    11281 gctgtaatgc ctcccagcat ttatataccc aaggtaagag actgcttaag gacggggaag
    11341 attgtagtag gtgcgcaaaa tgtttatccg aaagattatg gtgcctacac aggtgaactg
    11401 tcagctccca tgcttaaaga ttttgattgc cgatatgttc tggtaggaca ctcggagcgc
    11461 aggcaatttt ttcatgaaga tgaaaatttt gtggcgcaaa aattccacca tgtcaaagat
    11521 catggtatga tacctgttct ttgtgttggt gaaactcttt ctgaaagaga gaatggaaaa
    11581 acagagcagg ttattgctca acaggtgctc gcagtgagtg caaaagggaa agattgtttt
    11641 cgtgattgcg tagtggctta tgagcctgta tgggcaattg ggacaggaaa aactgctaca
    11701 cctgaacagg cacaaaaaat acaccagttt attagagatc tggttggaga aataaatgat
    11761 agcgatgcga aacatttgac gctcatatat ggtggcagtg ttaatgaaaa taatgcaaaa
    11821 gccttatttt ccatgccaga tattgatgga gggttagtgg gtggagcatc gttgaatgca
    11881 aaacaatttg tggaaattgt gaaatgtatc aattgatatt aatgattcat gtcttaattg
    11941 ctgtaatttt aataggcttg gttcttatcc aacatggcaa gggtgctgat ataggtgctg
    12001 cttttggttc tggcgcatca aacacgttat ttggaagtca aggtactggt ggcttcttgt
    12061 tcaagttaac tggtggtctg gcaataactt tttttattac cagtttgatg ctgtcttata
    12121 tggtttctac gcagaaccaa aaggcaggac agttagctat tcctcaacaa accggtgctc
    12181 cagtcagttc agtcccagtg ccagttgaaa aaaataataa gaagtaacta aaaagatgta
    12241 gtgtctttag ggctgttgtc ttttgtgatg aactcaggat aacaaaaata aaaataagcc
    12301 gaagtggtga aattggtaga cacgccgtct tgagggggcg gtggcgcaag ccgtgccggt
    12361 tcgagtccgg ccttcggcac cattttaaat cgagcaaggt gaactgatgc tatctcaata
    12421 tctacccgtt ctcgttttta taattgttgc cttgatttta ggtgcagtaa tgataggcgc
    12481 tggttctttg ctttccaagc atagtccgga tagcgctaaa aactccccct atgagtgtgg
    12541 ttttggcgcc tttgaaagct cccatatccc gtttgatgta cggttttatc tggtggctat
    12601 tttatttatt atttttgatc tggaaacagc attctttttt ccttgggcct tggcattacg
    12661 taaaatagga tggtttggct tttatgctat gatgttattt cttggactgt tggttatagg
    12721 ttttatttat gaatggaaaa gaggcgccct agagtgggaa taaggttctt tcattctttt
    12781 aaaatatttg atttaatctt tcattttagc cattactatg ggaagcaaag gacgcttggc
    12841 aaatcattac agagcttttt gcttttagat gaacctgatg gatttttagg ttggttttta
    12901 aaacttggtc atcctttgcc aaaacgatag ctgagattat attttaagcc attgtaataa
    12961 tggttatgta aaaaactgga ttattaatta tttaactgct tagaggcgaa ctatggcggt
    13021 tgcagaacta gaaaaaaaag gttttgagtt aactacggtc gaaaaattgg ttggttgggc
    13081 acgcagtggc tccatgtggc caatgacatt tggcttagct tgctgtgccg tggaaatgat
    13141 gcacgtggga gcagcacgct atgatttgga caggtttggt attattttcc gccccagtcc
    13201 acgccagtca gatgtcatga ttgtagcagg gactttatgt aacaaaatgg ccccggcact
    13261 cagaaaagtt tatgatcaga tgccagaacc acgctgggtt atttcgatgg ggtcttgtgc
    13321 caatggtggg ggatattatc attattccta ttcagtggtt cgtggctgcg atcgtattgt
    13381 gccagtcgat gtctatgttc ctggctgtcc accaacagca gaagcgttgt tatatggcat
    13441 tattcaacta cagaataaaa tcaggcgaaa acctgtttta gaggcataag ctcattaagg
    13501 gtgcagatta gatgacaaaa aatgagtatt tgattgaaaa gctacaagct gatttagcaa
    13561 atcatattac cgagttaacc tccgcatatg gtgaggtaac tattgagtgt gaggtgcaaa
    13621 atttattgcc tgttatgatt gagttgagag acagagagga attttctttc gatcagttaa
    13681 ttgatctctg tggcgtagat tatttgcatt atggtgatta tgattgggaa acagagtctg
    13741 cgacagaaca tggattttca cgaggtgtcg agcgtcagga agccaaggct tatgctgtaa
    13801 ataaaccacg attcgccgta gtctatcatt tattatcaac caaaaaaaat catcgtttac
    13861 gagtcaaatt atttgtagaa gaatcccatt taattgttcc atcagtacat catttatgga
    13921 agtctgctaa ctggtttgag cgggaagctt atgatttata tggaatttta ttcgatggcc
    13981 atcctgattt aagacggcta ctgacggatt atggttttat aggccaccct ttccgcaagg
    14041 attttccact cagtggagag gtagaaatga gatatgatgc aaaactgcaa aaggtaatat
    14101 atgcccctgt agacattgtg ccaagaattg tagttccaaa ggttattcgt aacgataacc
    14161 gctacatagg taatgaaggt agcaaaaatg attgaactta aaaattatac cttgaatttt
    14221 ggcccacaac atcctgctgc acatggtgtt ttaagattgg ttcttgagtt agagggtgaa
    14281 actatcgttc gtgctgatcc acatattgga ttgcttcatc gtgcaacgga aaaattggct
    14341 gagaccaagc cttacattca aagcattggt tacatggaca gattagatta cgtctcaatg
    14401 atgtgcaatg agcatgctta tgtcatggcg attgagaaat tattgggtat agaaccgcct
    14461 ttgcgagcca agtatatacg aactatgttt gatgaggtga ctcgaattct gaaccatctc
    14521 ttgtggttag gagctactgc attggatatt ggtgcaatga cagtgtttct ttattgtttc
    14581 agagagagag aagatttgtt tgattgctac gaggcagttt caggagcacg tatgcatgct
    14641 acctactata ggccaggagg ggtagcaaga gacttgccag atactatgcc tcaatacaaa
    14701 ccgtcaagat ggcatagcga aagagagatt gaaaaaaaga atcacaatcg tcagggcagt
    14761 cttttggatt ttctttggga ctttactgaa cgatttcccc actgtgtgga tgaatacgaa
    14821 acattgttga ccgataatcg tatatggaag caacgtactg tagatattgg tgtcgtttca
    14881 cctgaaaatg cgctgcaatg ggggtttacc ggaccaatgt taagaggctc cggtattgcc
    14941 tgggatttac gcaagaaaca aagctatgct gcttacgaca gggttgaatt tgatattcct
    15001 gttggcaaga caggggattg ttatgatcga tatttggtaa gagtcgagga attgagacaa
    15061 tccaatcgaa ttataaggca atgtattgaa tggttgcgca agcatcctgg tccagtaaaa
    15121 gtcgatgatt ataaagtgtc gcctccacgc cgtgtagtaa tgaaacatga catggaagca
    15181 ttaattcatc actttaaatt atttaccgaa ggcttttgtt taccgcgagg tgaagtttat
    15241 tcatctgttg aagcgccaaa gggcgagttt gggatctata tggtgtcaga tggagctaat
    15301 aaaccttacc gtctgaaaat aagagctcca ggctttgctc atttatcaag ctttgatgat
    15361 atggttagag gtcacatgct agctgatgga gtggctatat tggcaagtca agatatagtg
    15421 tttggagaaa ttgatcgtta atttaacgac atgcttgctt aaagtgtatt aagagataat
    15481 aaacgatata aaggtttcga aatgtctgct aattcagcaa aaatattaag tcaattgatg
    15541 ccggcaaacc gtatgctcga tattgatcat tggatatcaa aatatcccaa agatcaaaaa
    15601 caatccgcgg tcatgagtgc tcttcgaata gtacaagaag aacatggtca tttaacaacg
    15661 gaattaatga atgcagtagc tgaatatctt gatatgccgc ccatcgcagt ttatgaagta
    15721 gcaagttttt atacaatgta tgaacacaag ccagtggggc gacatttaat taatgtttgt
    15781 accaatattt cttgcatgct gagggattct gctggcgttg ttgaacattt agaaaaaaaa
    15841 ttgggtgtta atctaggtgg aacaacagaa gatggtcgat ttactttaag atcagttgaa
    15901 tgcttgggtg cttgtgtgaa tgcgccaatg atgcaagttg ataaagatta tcacgaaaat
    15961 ttgactgctg aatctataga taaagtattg gaacagtacc aatagaaaat aaaggtgttt
    16021 gccatggttg aactaaatca agtttgttac cgaacatttc atttaccaga gtcctggtcg
    16081 ctatcaactt atgaaagtat tggtggctat agcgcatggc gaaaaatttt aaaagagcaa
    16141 acatcacctc aattaataat tgaagagttg aaaacttctg ccttgcgcgg acgaggaggg
    16201 gctggattcc caaccggttt aaaatggagt tttatgaata gaaactcccc tgttcaaaaa
    16261 tacgtagtat gtaattctga tgaaggtgaa ccgggtactt gtaaggacag agagattctt
    16321 actttaaatc ctcaccaatt aatcgaagga atggccatag ctgggtatgt tatgggcgcc
    16381 acggttggtt acaactacat aagaggagaa ttctggctac cttttgagcg tactgaggct
    16441 gcaataaaag aagcatacga tgctggcttg ctaggtaaaa atatattagg ctccggcttt
    16501 gattttgatt tatataatca tttaggcgct ggtgcttaca tttgcggtga agaaactgca
    16561 ttgcttaact caattgaagg aaaaaaggga atgcctcgtt ttaaaccacc attcccggca
    16621 aattatggct tgtatggtaa accgacaacc ataaataaca cggaaacatt tgcgtctgtt
    16681 ccggttatta tggaaaaagg tggagaatgg tttttaaaat taggtaaacc gaacaatggc
    16741 ggtgccaaat gctttagtgt tagcggccat gttaacaaac ctggtaacta tgaaattccc
    16801 ttgggcacgc cattcaaaac gctacttgat ctggctggcg gcgtgattaa aggccgaaaa
    16861 atcaaagccg tgattcctgg tggttcctct atgccagtgc tcccaggcga cgtcatgctg
    16921 gggctggata tggattatga cagtatacag aaagccggct caggcttggg ttcaggcgca
    16981 gtcattatca tggatgaaac cacctgcatg gtggatgctt tgtatcgtat ttctgagttc
    17041 tacatggatg aatcctgtgg acaatgcaca ccttgtcggg aaggcacagg ttggttagtc
    17101 aggttattac acagaattat aaacggtcat ggcgagccgg gagacgtgga gaaattagtg
    17161 aatgtggcga ataacataga gggaagaacc atttgtgcat taggcgaggc agcagcttgg
    17221 ccagtacaga gttttgttaa acatttctat gatgaatttg aatatttcat aaagcataaa
    17281 cgctcgatcg tcgcagcata attaagaagg ttagaccatg gctactattg aaatcgacgg
    17341 taaaacattt gaagcagaaa acggtaaaat gattatagag gttgctgatg aggctggcat
    17401 ctatattcca cgtttttgct atcataaaaa attatctgtg gcagctaatt gtcgcatgtg
    17461 tttggtcgaa gtggaaaatg ggaggaaacc ggttcctgct tgtgctacac ctataactaa
    17521 tgggatgaaa gtatttacaa agtcagagca ggctatacac tcccaaaagg tagtaatgga
    17581 atttctcttg ataaatcatc ctttggattg ccctatctgt gatcagggtg gagagtgtga
    17641 gcttcaagat atttctatgg ggtttggcgc tgataaatca gagtacacag aaaccaagcg
    17701 tgcggtagac gatgagaatt taggaacact aatatctact gaaatgacac gttgcatcca
    17761 ttgtacacgc tgcgtgcgct tcggcgagga aattgcaggg gtaagagagc tgggagctac
    17821 cggccgtggc gaaaagacgc agattggtac ttatgtagaa cacagtatga catcggaagt
    17881 ttcagggaat atcatagact tgtgccctgt tggcgcctta acttcgaagc cttatcggtt
    17941 taaagcccgt gcatgggaat tgactcagca tgatagtgtt gcgcctcatg attgcttggg
    18001 gtcaaatgtt catattcata caagaaataa taaattaatg cgtgtagttc ccagggaaaa
    18061 cgaatctatc aacgaaacct ggctttcaga cagagacaga tttagctatt tggggttaaa
    18121 tgcggtttca agggcgagca aaccacaaat caaaaaaaat ggccaatggg aagcggttga
    18181 ttgggaaacc gcacttaagt ttgccgcaga agggataagc cgagttatca aacaacatgg
    18241 cccagagcaa atggccgctt ttgcgtccag ttcttctacc ctggaagaaa tgtatttact
    18301 gcaaaaatta atgagagagc taggtgttca aaatctagat caccggttac aacaaattga
    18361 ttttagagat caggcatttt tacctactac gccagtaagc actttgcctt acgcagagat
    18421 agatcatcag cattcaattc tgttaatagg atgcaatatt catagagaag tgccgttggc
    18481 aggaacaagg gtaagaaaag cttttcgcaa tggcgcaaaa atttatgccc ttaatccagt
    18541 agattttgat tatcattttg atttatccgg acgagtcatt atttctcctt tggaaatgcc
    18601 gatgcaatta gctaaattag ccttagcgct tacaaccgaa ttggcatcgc ttccagaaga
    18661 agttcaaaaa ctgttaatag gtttggaagt agataaacaa accaaacaaa tagcacaatc
    18721 attaaaagaa gagaaagcct gtttgataac cggagcaata gttgaaaatc atccagaagc
    18781 ttccttattg cgtactttgg tggctattgt tcaaaaactt agtggagcca aattagtcag
    18841 attaacgact ggagcaaaca gcgcgggcgc atgcattgca ggtatgctgc cgcatagaac
    18901 agttgctggg aaatcaattg cagagccagg tttcaatgta caagaagcgt taaattccaa
    18961 gttaaaaggt tatttactca tgggtgttga accaggctat gattttgcaa atccagccgg
    19021 ggcaaggcaa tcaatgttag ctgcagagtt tgttgtactc ttatcagcct atgagcatga
    19081 atccatgcat gattatgcag atgttattct accgatcgct ccttatgctg aaacatctgg
    19141 aacatacata aacattgata atacctggca aacagtaaaa ggagccatgc tgccatttgg
    19201 cgaatcacgg ccagcctgga aggtgcttcg tgttttgggt aatttattgc actgcaaaaa
    19261 atttgattat acctcaacag aggacatctt ggaggaagtc aaagaagcag tatcgatgac
    19321 aatggagcac gaatacgaac cttactatcc tgaatcattg cctgtcatta atcaatcact
    19381 ggtaagagtt ggagagtggc ctctttatcg aatagatgct attactagaa atgcaaaaga
    19441 gttacaatta tgtgccgcat ctgaatctgc ctgtataaga attcatccat caacggcaga
    19501 tagattgaaa ttagaagaaa ttgctactgt atctcaagga gatattgaga taacattgcc
    19561 gctaaaacgt gatgagcgca ttgcggttga tgttgtgtgg gtggcaaatg caatgccaga
    19621 aacagttgac cttggtcact cgtttgctgc aataacaata aagcgctaga aaggtataaa
    19681 aatgcttcat actattggca tactaatttg gattattatt aaaattcttg tgatagttgt
    19741 ccctttactg atttccgtgg cctacctaac ctatgcggag cgtaaagtga ttggctatat
    19801 tcaagtgcgt atcggcccga acagggttgg tttaaagggc ttgctacagc catttgctga
    19861 tttattgaaa ttaataacta aagaaatcat agttcccact cgatcaaata aatacctttt
    19921 tgttattgct ccactttttg ctttagtccc ctccttagtc ggttgggcgg taatcccttt
    19981 tcaggaaggt attgtcctgg caaatattaa cgcaggggtc ttatacttat ttgccatgag
    20041 ttcgttgggc gtatatggtg ttcttattgc aggatgggca tcgaattcca aatatgccat
    20101 gtttggcgca ctgcgtagta ctgcccaaac agtctcttac gaaattgcta tgggatttgc
    20161 tcttgttggt gtgctcttgg ccgctggaag catgaacttg actgatattg ttaattctca
    20221 aaaaggtgga atgctgcatt ggtggtttat tcccttgctc cccctattct tggttttctg
    20281 gatctccggt attgcagaaa ctaacagagc tccttttgac ttggcagaag gtgaatcaga
    20341 aattgttgct ggcttccatg tagaatattc tggcattgga ttcgctttat tctttctctc
    20401 tgaatacgcc agtatgattt tgatttcaac agttttggct attttattca tgggcggatg
    20461 gctgtcacct tttgaaggca ttacgttcct ggatcaaatc ttttttatag tacccggatt
    20521 tgtttggttg cttctgaaaa ttagtttctt cctttttgtg tatttgtggg taagggctac
    20581 tttcccccga tatcgttatg accagcttat gcgtttaggc tggaaggtac ttatccctgt
    20641 tactatagtt tggttaatag taaccgccct tatggtggtt gctcatgtca agccatggtt
    20701 ttgacggtta gaagagaagc cgatgaaaaa agtatatcat tatataattc actatgttcg
    20761 tacctactta ctgttagagc tattagccgg tttatggtta acagtaaagt attttttcag
    20821 gaaaaaaata acagttcagt ttcctgaaga acaaacgcca ctttctccaa gattcagggg
    20881 gcttttggca ttacgtcgtt atcccaatgg tgaggagcgc tgcattgcat gtaaattgtg
    20941 tgaagccgtt tgccctgcat tagctattac tattgaatca gagcaaagag acgatggatc
    21001 acgccgtact actcggtatg atattgatat gtttaaatgc attaattgtg gattatgtga
    21061 agaatcttgc cctgttgatt cgatcgttgt cactccaatt catcactacc atatcagcga
    21121 acgtggtcaa aatattatga caaaagagaa gcttttagca gtaggcgatt tgatggaatc
    21181 acaactcgca gcagacagag ctgctgatga aaaataccgt tgatggggtg atttatgcat
    21241 gaatgggtaa tccaagcaat tttttatgtc tttgcattat tgaccgtact gtcggcagta
    21301 atggtaataa gccaaaacaa tccagttcgt tgtgttttgt ttttagtgct cacttttttt
    21361 accagtgcgg ttttatgggt tttagctgaa gctgaatttt tagcattaat ccttatcctg
    21421 gtatatgttg gcgctgtcat gactttattt ctgtttgtcg tcatgatgtt aaacattgac
    21481 attgaaagca tgaaaagtca tttaattaaa tatctaccat ttggattaat aatagttgcc
    21541 ttattgactg ggttattaat ggtagctatc cctaaagatt tatttaagaa cagtgtgcaa
    21601 actcaagaaa agcctttgag tgttaactca caattaatgg atttatctac cgaagatggg
    21661 ctggttacac ctgaaaaggc tacatcgaac acagaaaagt taggaatggt cctttataca
    21721 gattatattc ttgcctttga aatagctgcc gtcattttac tagtggctat tgtgtctgca
    21781 attactttgg tgcatagggg ggctatcagg tcaaaacgac aagatatcac tcagcaaatt
    21841 atgactcgaa gggcagaacg agtgaagttg atcagtatga agtcagagaa atagctattg
    21901 gggaattctt tatgatacct gtttatgatt atttagtatt aggagtgatt ttgttcggct
    21961 tgagtctcgt tggtattatg ctcaatcgta aaaatatcat cttattactt gtttgtgttg
    22021 agttgatgct cttggccgtg aataccaatt ttattgcatt ttctcattac tacaatgaag
    22081 taggtggaca ggtatttgtc tttttcattt taactgtagc tgcagcggaa gcagcaatag
    22141 gtttggccat agtcatgttg ctctatagaa atagaggcaa tattgacgtt gataaaatga
    22201 atcatttaaa aggttaaaat cgtgagtatt caacaagtct gcttagtaat cgttttgact
    22261 ccccttgttg gttctgcaat agcaggattt tttagaaacc agattggacg agtcggagct
    22321 catactgtaa ctattttagg cgtagctatt tccttagcct gttcaatttt tcttgcgtgg
    22381 ggcctgtttt ctggttcaat cccaaacact aatagtcttg tttaccactg ggctagcggg
    22441 ggggcgttaa ttccctacga atttaatatt ggttttttaa tagaccctct aagcgttgtg
    22501 atgctggtta tagttaattt tgtttctttg ttagtccatg tctacagtat tgggtacatg
    22561 gcagatgatg atggttatca gcgatttttt agttatatct ctttatttac attcatgatg
    22621 ctcatgttag ttagcgcaaa caactttctg caattatttt ttggctggga aggggttggg
    22681 cttgtttctt atttattaat cggattttgg tatcaaaagg aatctgcaat agaaggcagc
    22741 ctgaaagcat ttcttgtaaa ccgtgtagga gattttggat ttgtattagg aataggttta
    22801 atttttgctt attctggaag ccttgattat gaaaaagtat ttaccagcgc aaattattta
    22861 gcaagccaga acatagagtt atttagcggc tactcctggt ccctgattac agttatttgc
    22921 ctgctgcttt ttgttggcgc catgggcaaa tcagcacagg tgccacttca cgtttggtta
    22981 cctgagtcaa tggagggtcc aacccctatt tcagcgctaa tccatgcggc gacaatggtg
    23041 acagcgggtg ttttcatgat tgctcgcatc tcacctttaa ttgaattgtc tacagctgcg
    23101 cttagcacag tattagtaat tggtgctaca ggagcattgt ttacaggaat actggctttg
    23161 gttatgaacg atataaagcg cgtggtagca tactctactt tatcacaact aggctatatg
    23221 atggtggcaa tgggtgcctc agcctatagt gccggtatgt ttcatttatt gacgcatgct
    23281 tgctttaaag cgctattgtt ccttggtgct ggttcagtca ttattggcat gcatcatgaa
    23341 caagatatgc ggaaaatggg tgggttatgg aataaaatgc cgattaccta tgtaacctat
    23401 gtcataggca gtttggcatt gtgtgcattt cctccttttg ctggttttta ttcaaaagat
    23461 accattattg aagcagcgca gctttcccag atacccggca gcagttatgc ttatttttgt
    23521 gtaacagcag gcgctatggt tacagcatta tatactttca gatccttatt catgacattt
    23581 catggtaagc cacgtatgga tgaacataca ttaagtcatc ttcatgaatc tccatgggta
    23641 gtatggttac cattagtatt gctcgctatc ccatcaataa ttttaggcta tgtgctttac
    23701 atgcctattc tatttgatac accaagcctc ttaggctcat caatttttgt tttacctgag
    23761 cataatgttt tagctgaact tgctcatgaa gtaagttcgc catttgcaag tgctgttcac
    23821 gcgatttatt ctttgccatt ttggattaca gtactcggag cagttattgc ctggatttgt
    23881 tatatcgctg tcccatctat tcctggttat ttagctaggt atttttcaat tatctattct
    23941 attttactca ataaatacgg gtttgatcgc tttaacgagt tgttctttgt gaaaggagct
    24001 agaggattag gcattgcttt ttacaagatt ggtgatcaaa aactaattga tggtgcagtt
    24061 gtcaatggta gtggacgcct ggttcgctgg ttctctggga aagggcgaaa gatacaaagt
    24121 gggtacatct atcattatgc gacagtaatg gtgtttggat tgctggcctt tttatgctgg
    24181 ttaatcctgg actgaagata aggtgaaggt atgcattatt tgctcaattt attaatttgg
    24241 ttacctatat tgggtggcgt ttttgttttg ctgactgggg atgataaaaa tccaaatgta
    24301 tcgcgttatt taacattatt caccatactt ctctgtttag tgctctgcat acctttagtt
    24361 aaaggatttg atctgcaatc ttttggcatg caatttatag aggaaatccc ctggatgccg
    24421 gcactgggta ttaattatac tcttggtatt gatgggttat ctttactatt aattgtttta
    24481 tccattttta ctaatttgat agtgattttg gctacatggg atagcattag taaaaaagtt
    24541 tcccaatatt tatcagcctt tttaattatg caaggccttc tggtcggtat attttctgct
    24601 atggatgcca tagtatttta tattttctgg gaagcaactt tgattccaat gtatctgatt
    24661 ataggtattt ggggttctga taacagagtt tatgcagcaa taaaattttt cctatatact
    24721 tttttagggt cagttctcat gctggccagt ttcctgtaca tgggctacat tgcaggttca
    24781 tttaagattg aaacctttta tgctatcaaa ttaggcatga ctgcacaaac attgattttt
    24841 attgcatttt tcttaggttt tgcaataaaa ataccgatgt ttccagtcca tacctggttg
    24901 ccagatgcgc atactgaagc tcccgctggt ggttctgtcg ttttagcagc aattttgcta
    24961 aaactgggtg cttatggatt tatccgtttt tctttaccaa tagtcccgga cgcttgcagc
    25021 aaatatgctc ctctgatggt tgccttatct ttgatcgcag tggtttatat aggactcatt
    25081 gcaattattc agaaggatat gaaaaaattg attgcatatt cttcaatttc acatatgggt
    25141 tttgtaactc taggctgttt cgctatattt gcaattgctc gtcatggggg actaagcaac
    25201 gccggtttaa tccttgaggg cgcaattgtc gttatgatat cgcatgcctt tgtctcaagt
    25261 gcaatgtttg caggtgtagg ttttatatat gatcgtatgc atacaaggca gctcgcggat
    25321 tttggcggaa tagtaaatac tatgcctata tttgcttctt tttttatgct ttttgctatg
    25381 gcgaatgccg gcttgccagg aacatccgga tttgttggtg agtttatggt gatattaggt
    25441 agtataaagg ctggtttttg ggttgcattt tgggctgcaa ctacattgat tattggagca
    25501 gcatatacgc tatggatgta caaaagagtt atttttggtc ctgtagctaa taaaaaggtt
    25561 gctgccttaa aagatatatc aggttttgaa ttaagtgctt atgtattgct tgcaataatg
    25621 gtcattgctc taggagtgta tcccaaaccc atgttagagt ttgtgcatca aactgtaagt
    25681 catactttgg cactggctga taaatctaaa ctctaacaaa gaactgcgat aggcttacat
    25741 tgcaatcaag ttccttagca aggttaaata tgatgacatt actagaaaat atccatgtag
    25801 caataccaga aatgattatt ttaataaccg cgtgtttggc gttgctttct gatttgttct
    25861 ttcgtcataa attaaaatca attgcatttt acatatcttg tgtaggaatt atagtttctg
    25921 cagcagtaag ctttgtattt ataggaagc
//
LOCUS       DACVWI010000025        25816 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.025, whole genome shotgun sequence.
ACCESSION   DACVWI010000025 DACVWI010000000
VERSION     DACVWI010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 25816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25816
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.025"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..402)
                     /locus_tag="JBH85_03870"
     CDS             complement(<1..402)
                     /locus_tag="JBH85_03870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4917 family protein"
                     /protein_id="HAU0945329.1"
                     /translation="MAKLNPISFEEALENSTNKNRSILLGNGFSISLCENFDYKYLYK
                     QAQKLADEGEISISKSIKNLFDDINTCDFEKVLDHLNITIETIKHYPKAELLNRTLNK
                     DKDNLIAAFYNTINSVHPKFQSDISPGTFIAC"
     gene            complement(634..6579)
                     /gene="traI"
                     /locus_tag="JBH85_03875"
     CDS             complement(634..6579)
                     /gene="traI"
                     /locus_tag="JBH85_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer relaxase/helicase TraI"
                     /protein_id="HAU0945330.1"
                     /translation="MLSLQPLDSADGAAAYYLDVVNYYENDSKSVRWLGDGAKILGIH
                     GQAVEKEQMIALLKGILPDGTQLGRIDKDGIHHRPGFDMTLTAPKSFSILLESGADPR
                     LGEVFDKAVEWFVEEMEKEFAQARQLVDGKIEYIDTRNLVIAAFRQPSSRANDPNSHT
                     HLVVQNMTHCPDGKWRSLASDMDGQKGVVEQIMKHHIYGGLKFRNKLANLTKELGYQL
                     ASDGDGLWEIQGAPEQVLTHFSKRRESIEALLDEKGWSGAKASSIAAQKTKLDKEIID
                     YEKWKEDIIKECQEMGFDPHQLVASSYKPQKNLFQTLKENIVERFYGKDNIEMTHARE
                     SVYVAIESISQQHAVFEERELKKEALKYVIASNKIIDETLINKAIDENIANQNLYTAR
                     HPFTQKPLLTTPWQLTLESEAIQRIENGKGAVSAICSKQKVSEFIKAKEQEMAFALSP
                     SQKKAMTTFLTSTDRFIAIQGYAGTGKTTMLRLTRELASLQGYEIRGITAGSAAANEL
                     RHKGGLNASTFARELGRLQNQKQDLSKTIFVVDEASMLSNPQGHKIIKLAEQFNTQLK
                     IIGDKAQLPSPSSGKLFSVIQDYGIKTVAMTDNLRQKDSELRESAIHAGRGEIYDAVD
                     KLTHVETLDTYLKRVDYISSKWLSLTPEERQNTLCFAPTHRNRQDITQILRNALIQEG
                     TLTGQEHLQPILKERNLTGIKLRNAAYYSQNDIIRFNHTIQRYNIKAGDYLTVGQVTN
                     KNKHNNTLILKHENGQAIKFKLSSLPEFRTENKDLERPVEVYRREQLSLMAGDQIQWK
                     RNSEHNGIRNSELATIRQINNEGITIITEDNQTLHLPHGAKELRHLDHGYVLTTYATQ
                     GKDKKRGLGLIESQNRFASTIQNYYVETTRGIWEMIVVTDDKDHLVKAITTNNSDKYS
                     SMDMVDSDTLKAHEARFKEHKNSIVLQNAIEKKLSKEQDWKGLEQTVETYVQCKQQGE
                     DRKAAKLAFAIVNDPKLYRLAKERLGFGVSTYRREALRFQTSKLLHSLPKSERQDFST
                     VRQYVFLNQQILKRSQHINAQSLDNGISNQNKQALQQQSAKRNAVAFVISRDLERYKP
                     YLQHFSIGELNRIGLPQHEYGKEFKKAQMRLESLGKQATRDLIRTNISLYLNAQGEEK
                     ERLAVQIKRESKLSHSFVLTHAKELNQKPESLWQSIHKDARLHSDKLFRNGLSAEGRL
                     AFDNIKAYKALQLELRENWSASLKEAGNSEGKSSNPKSIELLTRRNELAHELMQNKAM
                     PEIASYFKLDLAKLAVQTEKQQYRENIKQFTASKSNFKTRLAVINEIKNDITGHYPFI
                     KEANIESKTLSKYLRVTDRKERLSNISSPEKKDYQCFLTYKKASMQTYRLWQQAHLNK
                     ADGNVQNNKLISAAISQSSKRDALAHQLKGSKYLDSILSYEKGNKEKLLAQASNHQIK
                     LREIKELNEVVHTLSMQFPSVTNSNSAKEISAWKKNWLSLSSHMKQIEKGSGYQLALQ
                     EYPLNVSSVNTINKELENNYDFKPETITQKSLQSTNPVLQKIQQSAQFLDARIINEAL
                     MADPETTYKTIWGEPKTQNSRELRYSGGLIVSLKGKDKGLWHDFSDGIGGAPIQAIIA
                     RDKLSFKEALSQAASMVGINQLENLSIFIKAPISSKNELQKLNDLEKKNKVISAKSIW
                     DGSILAKGTLAEKYLKQHRGIESIDKMDIRFWPTGSQWKNCNEQGLLEDKVNKIPALI
                     IAARNEKNELTGVQRIYLDKQTASKNKFMDNPKLSKGIIDGSCGVIQKGMQGSRLYIA
                     EGFETGASIALADSKATVLCSFGVSNMKNLSPIIKKFHSKEVVIAGDNDGEFAKSQQA
                     IEKTINAFKQDNLSARAVFPDGLQGKAKTDWNDIHLSKGIAEIQKQLMRKDIGAISSI
                     VDKPIELPKTIADFVQIKSMKLSGSQIISIRDNAATIDNKRDLNQLVAAYNKSQQALE
                     KSGSFTPEKTLPTKTRSEIEMDR"
     gene            complement(6600..8492)
                     /gene="traD"
                     /locus_tag="JBH85_03880"
     CDS             complement(6600..8492)
                     /gene="traD"
                     /locus_tag="JBH85_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HAU0945331.1"
                     /translation="MMAVNPTKLFIRGGQIFLHNVRMFTQVGKKVSLAMLIVFFIFSV
                     IAFYFNTSAYQRYIGQQWVKAQAMTLIQSKAKQVVRMPTGESYPVYSAQIVKAPMVIG
                     IVNQLKQALLKSMIEALFASVMMLIVMVKWLQKRGENQSKAKIIRGSELVDENTLQKC
                     IKKTSRISPYRIGGVSLPFGSETQHIQIVGTTGSGKTVAIRDLLTTIQARGERAIIYD
                     KGGTYLSRFYREHQDVILNPLDTRGHSWNVWAECEDKADLEALAEAIMPMPINNTMDP
                     FWIKAARMIFVSTANELKNDPKRSNLMLLQYLLTADLGRIHHLLRHTESESLVSDKVQ
                     KTALNVKTVMATYLKSLLYLKDDGDIFSIRDWILNEQNNSCLFVSSDGRKHPTIRPLI
                     SAWINTATKELLSLAPDDNRRVWFILDELATLHALPFLAAVKSESRKFGGCFLLGHHG
                     ASQLRTIYGNDGAASLSNLCSTRLFLRLPEHTDAEHASRNIGTYEIEEVNESISYGAN
                     TMRDGISVSRQTKEKQLVLPTQIQVINDLQGYLRVKGEFPAAKIKLNYVDYPLIHEEF
                     IARDIDPDPLRQKVEQLVDTYSDPILAASHDDALEAATSTKKDITKPIAREKKLEEEK
                     ELVEFL"
     gene            complement(8489..9028)
                     /locus_tag="JBH85_03885"
     CDS             complement(8489..9028)
                     /locus_tag="JBH85_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945332.1"
                     /translation="MMLTRIGFHKGFQRYPYHCFLTSADLSLGLCSQKSRSGLNDGNW
                     ATHVRKTAGLVMNHRRIQKKMQSLDLRASNQSQKRHQAQKPLKVTQGIRANRCSKKIR
                     SLCYLGNHQNKEIVTPQLKEQENRFPLMPNAVFFFVQGTIHQVSLSSLALYSSSPLDF
                     LLFIHCSLIFTFFISIRSQ"
     gene            complement(9025..11754)
                     /locus_tag="JBH85_03890"
     CDS             complement(9025..11754)
                     /locus_tag="JBH85_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG"
                     /protein_id="HAU0945333.1"
                     /translation="MSEMAVTMQIYTITGGELLKAFYNATAAMFHYDGILGIFRTALI
                     IGGVWTVGQFIVKRDVRSMFFFILKYAFVISFILTPTCNLQIHDRTDPLRPDLTVDNV
                     PLVLGVVGGLSSQLSDKITRLFEFFFHSPNDMDYSQTGMIMGAKLFLSASNIKITDPL
                     FNANMQKFMQQCVFYDVMYGRYGLKDINQARDIWELVKSNASVARGFIYDGSFKSCME
                     AASLLDSAWSGVIEDAKSKYAGFAFGNHSDALANFEKYLPQAYNHLTAMSGDAAALIR
                     QNMMANAIRDGVFSMGARVNSKAAIDSFSASRAQDKIPAALSNIGLMSAYWLPMLQSL
                     LFCIVIGCFIFVLFFFPFPSGISFFQFYATLYVWLALWAPMFTVINYIMTILAQFSLS
                     FVSTGATTLAYQTGMNQVYENMAALGGYLVLATTTLSYMLISRHVGSFVSLTQQPTGI
                     VQNAASSAAEEAQMGNYSYGNTSFANHNGFNSSSFHNDQNARISLGGIETSLDSGSIA
                     RISRDGSETLTMATATSHTPLNIQLGESTRSAFSELSDSAKSAGFNKSIASSEHYAAS
                     LRSLAELGETQSHGEQSGQGHQISTSAGFNAAASKISNLIDTFAHDHNISRDDATKVL
                     SAASINLGGSFGFGTGSAVPGAKGNIEIGGNVRHERDKSESHQDARLMNEARRFSEEH
                     HFTDVVNEARQATKDDHFRTSDDFSGRLANNFSAGFDKSMQYRDEAVASFSESESYHR
                     QATTSSEQTASINLDAQTGFIDWLSHHRAPNSQGTIGLQQAEWLIRHDPELAQSYARQ
                     FVGEKTAQSISQFQKNHPINESQVHQKNEGFKSRIAGSAGVDHALGDYTNTFNDRAKN
                     INAGSVNKDSVSAVDKDFARAKSEMSKNVEGIVQDGSQVMQDVIVAQANKDVK"
     gene            complement(11751..13136)
                     /locus_tag="JBH85_03895"
     CDS             complement(11751..13136)
                     /locus_tag="JBH85_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraH"
                     /protein_id="HAU0945334.1"
                     /translation="MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEP
                     HAYQAQRAGFYTGGNLYARSSVRNLQIMRLSWPKVSAGCGGIDATLGGFSHIKGKEFV
                     DFTKNILNNSQGLAFQLALEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGL
                     APRTRIAQQHACQSIGQSKNLFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNT
                     NVAWNALKKNGLFADDIELAQLMMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALL
                     RGGEVKIYQCDEKVKCLQPTLTSKNIDISHGLESKVRDLILDMASKIKDNVEQSEAAK
                     GLIESTQYPVMKMVSVQMAFMKDSAVIDTTRYSEAIAIDILFQYLNENLQLVKQAAGA
                     LQYPEAIMKEFQTDLTQARRDLVQMEGSAHQRMSMAMQMIQETQTIEQMLVGEFSSEL
                     TQSLSWANQMR"
     gene            complement(13133..13555)
                     /gene="trbB"
                     /locus_tag="JBH85_03900"
     CDS             complement(13133..13555)
                     /gene="trbB"
                     /locus_tag="JBH85_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly thiol-disulfide isomerase TrbB"
                     /protein_id="HAU0945335.1"
                     /translation="MRNKLAIFLILGTLFSSSLYADIDNAPLHALAKHQGFFFFFSSS
                     CPHCQRFAPTLKRLSQHYGFSVVAISVDGGFLPSFPDAVMNEGQTKVFQVSVYPSLFL
                     INPKSQVASLVTEGTIDEGELTNRLLKISQIHDKEVPL"
     gene            complement(13545..14327)
                     /gene="traF"
                     /locus_tag="JBH85_03905"
     CDS             complement(13545..14327)
                     /gene="traF"
                     /locus_tag="JBH85_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly protein TraF"
                     /protein_id="HAU0945336.1"
                     /translation="MARWFFVLLVSVSPFLYAEQPYLNEHEEGWYWHKDPKEEVKNKP
                     QTESVAPSHVSKPADPDKTWKLIGNRVQQARAQAILNPTPENIARARRLQRLIVAQAN
                     LFSEKWMLDLLINPDQDESLINPSSSAARDIYNQQNSMQKEKAITQISQTSGLLYFYE
                     GGEPFSERMAQVVSDFANSYHMTVIPIAMTNRISPMLPNSRVDSGQATQMGVKHIPAV
                     FALNPVSKKTMPVAYGLVSQSELKENILMASNAFQSGDYNAQ"
     gene            complement(14320..16131)
                     /gene="traN"
                     /locus_tag="JBH85_03910"
     CDS             complement(14320..16131)
                     /gene="traN"
                     /locus_tag="JBH85_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system mating-pair
                     stabilization protein TraN"
                     /protein_id="HAU0945337.1"
                     /translation="MKGFVLVFLILCSQVFALDLNQAYQEGVQTGTSHTNQSIDLLKA
                     LDLSQFPGYQANLPQEHYYSGVTQASTGLEADSQTAVAQNDAGKAVGESFNHRPLYQV
                     NPASESMQKLNQIAENGDAIMHGQNTDKTTCSLKPKECHYSWQEKTCLSSKVLGVLHC
                     ARHLRLDVSPYKTESYSLYLRKGGMRNTPFKVSVNLAQADTCQQGKTPCYTIYKDLAP
                     APAILLPANCAMVKVSFLDEKKLVVVEQTATCANPTLSLSVGNCRFGRCTVPYVHSVS
                     MTVEIYESKEYWDDQCQHLQNKEKEGLCHITEPLTCTEPNQTRIIGDVPLTRPCWKER
                     ASYTCGGSQEQNTCDNLVNQGCEQTASTCVKEEAGLCTTHQQTYQCPINQCTDNQLLC
                     GEDAFCLDGNCAKHELTPANEDDFKKAMSTLSAASDASKDFDGNANFIFKGQLLECST
                     TMLHFKNCCSDKGWGLDLELAQCSDAEKKLGKARENKLVVPTGEYCFKRKKLPIGSVC
                     VDHHQTYCVFQSKLARMVQVQGRRDQLHIGFGQNKYSNCSGITPEQLQLIHFEAIDFS
                     EFYEEVKNKQKQPDYQQTANGISQRLNQFYNQGDING"
     gene            complement(16131..16802)
                     /gene="trbC"
                     /locus_tag="JBH85_03915"
     CDS             complement(16131..16802)
                     /gene="trbC"
                     /locus_tag="JBH85_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     assembly protein TrbC"
                     /protein_id="HAU0945338.1"
                     /translation="MMKTIRMNTSFLVALFLLSFPALAEDEAYIASIEANTKNRANAF
                     TNEIKQISKSLETSEKSGQIAEFTGEMHQVIKTQEPIVTHLKKVSQVLVFLSFSMPEK
                     SLKAWLLQCKKSGATPVIRGLIHNSFKETMTAIQTLSKKTGIGMQLDPILFKTFDIAM
                     VPAVVYVKDTPACPANMDCKPVSYDSLYGDVSLDYALEKMRGDEQSEDPVLDQMILRL
                     RGELI"
     gene            complement(16815..17810)
                     /gene="traU"
                     /locus_tag="JBH85_03920"
     CDS             complement(16815..17810)
                     /gene="traU"
                     /locus_tag="JBH85_03920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus assembly protein TraU"
                     /protein_id="HAU0945339.1"
                     /translation="MKAFFILIAFLASGLTQAGSCHGRFVNPITDVCWSCLFPFSLGQ
                     ANLVSSNHLPDTKNPKLPVCECPGNPIPRLGLTMGYWEPVNLVDVTRTPFCLVNLGGI
                     SLNFGKYYRKGAVETDSNLSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPS
                     ELDVMWNDDELGFVINPEAVLFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMY
                     PLTGHVQEHVGGVQASVLLSERMNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPIL
                     PKSRYRYQMVNPLPTTNACYPLGRATTLWEAGHEYPFKGEDFGYLIWRKRNCCAF"
     gene            complement(17807..18415)
                     /gene="traW"
                     /locus_tag="JBH85_03925"
     CDS             complement(17807..18415)
                     /gene="traW"
                     /locus_tag="JBH85_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system protein TraW"
                     /protein_id="HAU0945340.1"
                     /translation="MKKLLLIICMLYLPFAEAKDYGVFGKTFEIAEIDFLEYIQQKMK
                     GMQVNGEWKTVQSEFKKRVKEHVARPTPIRLPRAEDNRTWFFNPSLAVPYDVKDSHGQ
                     VIVKQGTVINPLDRVGLSSTLLFFDGDDEAQVAWVTQELTQHQKVKLILTSGSVKEVA
                     NQLKQAIYFDLNGFLVAKFQIKYLPARVFQAGKRLQINEVTV"
     gene            complement(18412..18783)
                     /locus_tag="JBH85_03930"
     CDS             complement(18412..18783)
                     /locus_tag="JBH85_03930"
                     /inference="COORDINATES: protein motif:HMM:PF09677.8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945341.1"
                     /translation="MPFPKLPWRCMAMFKTTQVSLLTALITSILVNGIFFSALRRPDI
                     ATIDILSITSQFIKEEAQKNHSNLEKEAEIKAFSHRLESALQDLSHSKSLVLLPREAV
                     IKGSTDYTATLMTMIKLEHKS"
     gene            complement(18740..21337)
                     /gene="traC"
                     /locus_tag="JBH85_03935"
     CDS             complement(18740..21337)
                     /gene="traC"
                     /locus_tag="JBH85_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein TraC"
                     /protein_id="HAU0945342.1"
                     /translation="MDAAVTIGFKIRGAIMLSTIKKARLAVKKTSTILSHATGSLLET
                     LREELGMTDAHHKKQIEALLDTYCLAPYLPDEVYDSEADIYPYKQASHMMFECSTLIG
                     ASEETVTILTSILTDILPPESCFHALFWASPKIGHMIDEMEHQRNQGSEVLKALAHRR
                     AEFYRKGVYSSLTKESNFVLRDFRLFLCISIPRKSIEDDRLLLGSLREDISNNLKSVN
                     IICKELSIEEVISLKREWLFPTDSLYEEKTNYDTNTEIRFQLTDIEASMRVKSNQIEI
                     EREEDTRVIKCLSVRQYPKSPVQWQLGDLFGKMFNTSLQISCPFLFSFAIRIKDKDKV
                     MAALDAKYADEGQNAKQPFIAKWVKNFNKKYAEIEELRERLSGDDSLVDSYYNVLLFT
                     TPANVRRDVRRAKDVFRGNQFDLRTPTGLQLQTLLASMPFAPAEGMFDDYKSFGRVRP
                     LTSFNTVNLLPIQGEWKGAGRFAQVYPQRRGQFTAIYFFDNVVRNYNVAIVAPPGKGK
                     SFLMNDYIQSLLSQGGFVYIIDVGGSYAKSCEMLNGQLIDFNHDTEISLNLFSTIDAQ
                     AKNDTAFKDVHNQLIQLVGMMARPSGNVSDEERSHIEKAIEAMWRQHHNATTITLIAH
                     HLESSNDPISQNIGRLLYSYTKNGRYGSYFEPPCSLDFKRNLVILELGGLDGNKDLQR
                     IVLKILMYQITNAMYYTPKHIPKSCLIDESYELLSDNGTGGSANFVNEGYRRAPKYGG
                     NFITVTHGLDDYENNPTAKMCYDNAYYKIFLGASKSTIDTLKTSNQLDAYGERLIRSL
                     KITNEYSEFLMMCEENSTVHRLIVDPFSRVLNTTRGPEVEALKRLMATGLPLADAISK
                     VALEVYGYV"
     gene            complement(21304..21654)
                     /gene="traV"
                     /locus_tag="JBH85_03940"
     CDS             complement(21304..21654)
                     /gene="traV"
                     /locus_tag="JBH85_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system lipoprotein
                     TraV"
                     /protein_id="HAU0945343.1"
                     /translation="MKILTTLLLLPCVVLTGCAKLNEDFDCPAPNGGTCKRMDQVYDM
                     VNGKGKSLAVTPSRNPLVMDGRPGQPVRYGEGVMPLWIAPYEDTDGNYHQANRVYSVV
                     KEGQWMQQSQLALK"
     gene            complement(21668..22987)
                     /locus_tag="JBH85_03945"
     CDS             complement(21668..22987)
                     /locus_tag="JBH85_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraB"
                     /protein_id="HAU0945344.1"
                     /translation="MKLLDCTGLANMSIQLKKQQQIFLGIVIGVIVLVIACFALLGNK
                     TVKSREVDKPAYKKHSLASPISTATNESHWIEKTQNAWRAELAKSELFDKNLKALGDE
                     KDKQSKLITSQKDELSEMKSTLSELKHQIVKLQMERTTPIDGTLKNNEPQNGLLPRAD
                     EAAASNSMEMDSGFIQYTAKLNKKSKPRIKTPNNYVFSNTFAKAVVLQGADASAGVLS
                     QANPDIMIFQIVDDGVMPNKYRAPLKGCMVSASVIGDISSERGKFRTERLSCIHSNGT
                     NIDIQVTGIISDSKNGIRGRAVWRDEPMVKKAFWGNFWESMGNIGQQYSTDYSTSPLG
                     SVSTIQAGKIPLAAVSSGGSGAAKMYAQYNIKRAEMYHPIIQLPPIVTVDVTFLKGFW
                     LDGGTDTNAPEQPEESQNSKVAFEAPAESETAEEKAANQFFYKNHSF"
     gene            complement(22956..23669)
                     /gene="traK"
                     /locus_tag="JBH85_03950"
     CDS             complement(22956..23669)
                     /gene="traK"
                     /locus_tag="JBH85_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system secretin
                     TraK"
                     /protein_id="HAU0945345.1"
                     /translation="MKQMAMIFSLGLLIATAEGAQIKTVRNYEDIFINASIKEPNNLM
                     LEDDRIQQIKAPGNTLVDACNGKANCKLIDDTTGILTFLPSPLYHTRAFTINLLTEKG
                     LFYNVRVEPKPIASQTIVFKSYRNPVIRARAPHTSSYEKVMVGFLRALVNGYLPEGFT
                     QTIPKNPSVYKAQKTQLKRLLTVNGNRMRGEIFELKNVTNQPIDAKESWFNWPGTKGV
                     ALAKTHLAPFETTRLYRIS"
     gene            complement(23672..24235)
                     /gene="traE"
                     /locus_tag="JBH85_03955"
     CDS             complement(23672..24235)
                     /gene="traE"
                     /locus_tag="JBH85_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraE"
                     /protein_id="HAU0945346.1"
                     /translation="MKIEQKKSELMKEKKIRVLFIGISSVLLAMTFMQSITIVVLLHY
                     AHSKHETHFIPPKISQEFTLSGTGVSEGYLRDMTNFLTQLRFNITSSSATYQFNALLG
                     YVAPSLYGDIRAQLVKEVEQINHEHLSSVFYPSTFEIDIKHLSVKVMGQMKRFVGADL
                     MSDVRETFLIRYSYEYGLLKLTNLEKV"
     gene            complement(24239..24532)
                     /gene="traL"
                     /locus_tag="JBH85_03960"
     CDS             complement(24239..24532)
                     /gene="traL"
                     /locus_tag="JBH85_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraL"
                     /protein_id="HAU0945347.1"
                     /translation="MEDPRKYKTPQYLNEPYRLIIFTLDEVMVGALTLYVFGAVCGFF
                     VTSLILTCAFLFLMKRMKGNEGPYFYIHLFYWFFSLSPKLRATPPSWIRAFLG"
     gene            complement(24534..24836)
                     /locus_tag="JBH85_03965"
     CDS             complement(24534..24836)
                     /locus_tag="JBH85_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAU0945348.1"
                     /translation="MSLLNQFRSNVLSSINAHIGKIFILICLLIMAQGTFAADALSAA
                     EEVVKDTYNGSIKTYLYVGEAVAAVVTLMFTRNIKTLGGVGAMAIFLNVVAMLAGV"
     gene            complement(24851..25087)
                     /gene="csrA"
                     /locus_tag="JBH85_03970"
     CDS             complement(24851..25087)
                     /gene="csrA"
                     /locus_tag="JBH85_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HAU0945349.1"
                     /translation="MLSLTRRVGESIVIGEDIFITVLCCKGNQVRIGFNAPNSVAIHR
                     YEIYQKIQSEKHDGLADPTKKFCPSMQQSILNHH"
     gene            complement(25101..25478)
                     /locus_tag="JBH85_03975"
     CDS             complement(25101..25478)
                     /locus_tag="JBH85_03975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010654226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vir protein"
                     /protein_id="HAU0945350.1"
                     /translation="MTTSSTLAPTEEGRKRIDRLFLRFAAMYGQVWRSQFKSDEFLVF
                     VKGEWQQGLFTYADNILDMAIDLCRKNKELPPTLPQFIDFCKNCSKRSSFFVPDAAPK
                     NNNPEVAKTQLLKMKHILNMKVN"
     gene            complement(25426..>25816)
                     /locus_tag="JBH85_03980"
     CDS             complement(25426..>25816)
                     /locus_tag="JBH85_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945351.1"
                     /translation="FEKFWDLYPLKKSKQKAWEAFQALNLTPELPIQIYSALQQQIQF
                     YQQQHSQGQWVAAWKYPANWLAQHCWEDEIQSDTCQETNNAVHETNYKKQPIRDSFWE
                     SCKSGIEEETDDNIIDLSAYRGRSQAH"
BASE COUNT         7106 a         5428 c         5026 g         8256 t
ORIGIN      
        1 acatgctatg aaagtaccag gagaaatgtc gctttggaat ttgggatgaa cagagtttat
       61 tgtattgtag aaagcggcaa ttagattatc cttatcctta ttgagagttc tgttgagtaa
      121 ttccgcttta ggataatgtt ttatggtttc tatagttata tttaaatggt ccaacacttt
      181 ctcaaaatcg caggtattga tgtcatcaaa tagatttttg atgctcttac ttatggatat
      241 ctccccttca tctgctaact tttgtgcttg tttgtataga tatttataat caaaattttc
      301 acataaacta atactgaagc cattacccaa caatatggat ctatttttgt tggttgaatt
      361 ctctaatgct tcttcaaacg aaattggatt tagtttggcc atcctttgcc ctctataaat
      421 aagacccgat gtgtttaatt atagttcaaa cgggtatttt ttgagtctga ggcactgaat
      481 taccgaagtg gttatgtccc ttgattgtcc caatatcctt tgggggttct ctaagattat
      541 gtgtttaaaa cagaaaaata atatgaacac ctgatttagt atcaatggca gatattttca
      601 gtgtgagcat acgctatgct atggttggtg tatctaacga tccatttcta tttcactcct
      661 tgtttttgtg ggcagtgttt tttcaggagt gaaggagcca gatttttcta atgcttgttg
      721 acttttgttg taagctgcga ctaattgatt taagtctctt ttattgtcaa tggttgcagc
      781 attgtctcta atggaaatga tttggctgcc gcttaacttc atggacttta tttgtacaaa
      841 atcggcaatt gtttttggta gttcaattgg cttatcaacg attgaggaaa tggctcctat
      901 atcctttctc attagttgct tttggatttc tgcaatccct ttgcttaaat gaatatcgtt
      961 ccagtctgtt tttgcttttc cctgcaaccc atcgggaaat actgctctgg cacttaagtt
     1021 atcttgttta aaggcattaa ttgttttttc gatggcttgt tgtgatttag cgaactctcc
     1081 atcattatct cctgcaataa caacttcttt tgaatggaat tttttgatga ttgggcttaa
     1141 gttcttcatg tttgaaacgc caaaggagca taaaactgtg gctttgctgt ccgcgagagc
     1201 gatggaagca cctgtttcaa aaccttcggc gatataaagg cgggatcctt gcattccttt
     1261 ttgaataacg ccacaactgc cgtctatgat tcctttggat agctttgggt tgtccatgaa
     1321 tttattttta ctggctgttt gcttgtccag ataaattcgt tgaacgcctg ttagttcatt
     1381 tttttcattt cttgcagcaa tgattaatgc tgggatttta ttaactttat cttccaataa
     1441 tccttgttca ttgcagtttt tccattgaga tccagtgggc cagaaacgta tatccatttt
     1501 atcaatggat tctatgcccc gatgttgttt taaatatttt tcggccaatg ttccctttgc
     1561 aagaatagaa ccatcccaga tactttttgc agaaattact ttgttcttct tttcaaggtc
     1621 atttaatttt tgtaattcat ttttactgga aatgggggct tttatgaata tggaaaggtt
     1681 ttctaattga tttatgccta ccatggacgc agcttgagag agtgcttctt taaaggacag
     1741 cttatctcta gcaataatcg cttgaatcgg cgcgcctcct attccgtcac tgaaatcatg
     1801 ccataagcct ttgtccttgc ctttcaagct tacaattaag ccaccagaat aacgtaactc
     1861 tctggagttt tgtgtttttg gctcacccca gattgtttta taggtagttt ctgggtcggc
     1921 catcagagct tcattaataa ttctggcatc caaaaattgt gcagattgtt ggattttttg
     1981 taagaccgga ttggttgatt gcaatgattt ttgggtgatc gtttctggct taaaatcgta
     2041 gttattttct aattccttat taattgtatt tacagatgac acattcaatg gatattcttg
     2101 caaagctaat tgataaccgc tgcccttttc aatttgcttc atatgactgg aaagagataa
     2161 ccagttcttt ttccaggctg atatttcttt tgcagaatta gagtttgtga cgctagggaa
     2221 ctgcattgat agtgtgtgta cgacttcatt tagctcctta atttcacgca attttatttg
     2281 gtggttgcta gcctgggcta acagcttttc tttgttgcct ttttcatagg ataaaattga
     2341 atcaaggtac tttgagcctt ttaattgatg agccaatgca tcacgttttg atgactgact
     2401 gattgctgct gatatcagct tgttattttg tacattgcca tcagctttat taaggtgcgc
     2461 ctgctgccaa agcctgtaag tttgcatact ggcttttttg taagtcagga aacattgata
     2521 gtcttttttc tcaggtgaag aaatattaga taatcgttcc tttctgtcgg taactcgtag
     2581 atatttacta agggttttag attcaatatt tgcttcttta ataaagggat aatggccagt
     2641 gatatcattt ttaatctcat taattactgc aagacgtgtt ttgaaattag acttacttgc
     2701 cgtaaattgc ttgatgtttt cccgatactg ctgtttttct gtttgtactg ctaactttgc
     2761 caaatccagc ttgaaataag aggctatttc aggcatggct ttgttttgca tcaattcgtg
     2821 agctaactca ttgcggcggg tgagtaactc aatagatttt ggattactac tcttcccttc
     2881 actgtttccc gcttctttta aacttgctga ccaattttct ctaagctcaa gctgtaatgc
     2941 tttataggct ttgatgttat cgaacgccaa tcttccctca gcacttaatc catttcgaaa
     3001 caatttatcg ctatgcaaac gcgcatcttt atgtatggat tgccataatg attcaggctt
     3061 ttgattcaat tcttttgcat gggttaaaac aaaagaatgt gataacttgg attctctttt
     3121 aatttggact gcaagccttt ctttctcttc gccttgtgcg tttaaataaa gcgaaatatt
     3181 ggtacgtatt aagtcccttg ttgcctgctt gccaagtgat tccaggcgca tctgtgcttt
     3241 tttaaattcc ttgccatatt catgctgtgg caatccaatt cggtttagtt ctccgatgga
     3301 aaaatgctgc aaataaggtt tataacgctc cagatcccta ctaattacaa aagctactgc
     3361 attgcgttta gcggactgtt gttgcagagc ttgtttattc tgatttgaaa ttccattatc
     3421 caacgattgg gcattgatat gctgacttcg tttaaggatt tgttggttta aaaacacgta
     3481 ctgcctgaca gtagaaaaat cctgcctttc tgatttgggt agtgaatgta ataacttcga
     3541 ggtttggaaa cgcagggctt cacgccgata ggtactaaca ccaaaaccca agcgttcttt
     3601 ggcaaggcga tacaatttgg gatcattcac aatggcaaat gctaattttg ccgcttttcg
     3661 atcttcccct tgttgtttgc attgaacata ggtttctact gtctgttcca agcccttcca
     3721 gtcctgttct ttcgataatt ttttttcaat ggcattttgt aagactatgc tgtttttgtg
     3781 ctctttaaaa cgtgcttcat gagctttcag agtatctgaa tcaaccatat ccattgagga
     3841 gtacttgtca ctgttattgg tggtaatggc tttaaccaga tgatctttat cgtccgtgac
     3901 tactatcatt tcccaaatac cacgggttgt ttccacgtaa tagttttgga tggttgatgc
     3961 aaatcggttt tggctttcaa taaggccaag acctcttttt ttatcttttc cctgggtagc
     4021 ataggtcgtg agtacatagc catgatcaag atgtcgtagt tcttttgctc cgtgaggtaa
     4081 gtgtagggtt tgattgtctt ccgttatgat tgttattccc tcattgttga tttgtctgat
     4141 ggttgccaat tcagagttgc gaataccatt gtgttcagaa ttacgtttcc attgaatttg
     4201 atcaccggcc attagactca attgttctcg ccgatatact tcaacaggcc gttccaaatc
     4261 tttgttttca gttctaaatt caggtagtga ggacaattta aattttatgg cttgaccatt
     4321 ttcatgctta agaatcagtg tattattatg cttgtttttg ttagtgacct gcccaacagt
     4381 taaataatct cctgctttga tgttataccg ctgaatagta tgattaaaac gaatgatatc
     4441 gttttgacta taataagctg catttctgag cttaattcca gttaaattgc gttcttttaa
     4501 tatgggttgc agatgctctt gtccggttag tgtcccttct tgaattaaag cgtttcgtaa
     4561 aatctgagtt atatcctggc gatttctgtg cgttggggca aagcatagtg tgttttggcg
     4621 ttcttctggt gttaatgaca accatttact tgaaatataa tcaacccgtt ttaaataagt
     4681 atcaagcgtt tccacatgag ttaacttatc aacggcatca tagatttcac ctctaccagc
     4741 atgaattgct gattccctta attctgagtc tttctggcga agattatccg tcatggcaac
     4801 ggttttaatc ccataatctt gaatgacaga gaataatttc ccgctggatg gggaaggaag
     4861 ctgggcttta tcgccaatga tctttaactg ggtattaaac tgttctgcca gtttgatgat
     4921 tttatgtcct tgtggattag ataacataga ggcttcgtcc accacaaata tggttttact
     4981 taagtcctgt ttctgatttt gcaatctccc taactctctt gcaaaggtag aagcatttaa
     5041 ccctccttta tggcgcagtt cattggcggc tgccgagcct gcggtaatac cacgaatttc
     5101 atagccctga agagatgcta attcacgagt caaacgtagc atcgtggttt taccagttcc
     5161 tgcataccct tgaatggcaa taaatcggtc tgttgaggtt aggaaggttg tcatagcttt
     5221 tttctgtgaa ggggataaag caaatgccat ctcctgttct tttgctttta taaactcact
     5281 gactttttgt ttcgaacaaa tagcagaaac agcaccttta ccattttcaa tacgctggat
     5341 ggcctcgctc tcaagtgtta gttgccaggg cgttgtcaat aaaggctttt gtgtgaaggg
     5401 gtgtcttgcc gtatacaggt tttgatttgc aatgttttca tcaatggctt tattaattaa
     5461 ggtttcatcg attatcttat tgctggcgat tacatatttt agcgcttctt ttttaagttc
     5521 cctttcctca aacaccgcat gctgttgact gattgattca atggccacat acacagactc
     5581 tctggcatga gtcatttcga tgttatcctt accataaaag cgctcaacaa tgttttcctt
     5641 taaagtttga aagagatttt tctgaggctt atacgatgaa gccactagtt gatgtggatc
     5701 aaagcccatt tcctggcatt ctttgatgat gtcttctttc catttctcat aatcaatgat
     5761 ttctttatcc aattttgttt tttgagccgc aatcgaggat gctttagcac cactccagcc
     5821 tttttcgtca agtaatgctt cgatggattc ccttcttttt gaaaaatgag ttaatacctg
     5881 ctcaggtgca ccctggattt cccacaaacc atcaccatca gatgccagct gatagccaag
     5941 ttctttggtt aaattcgcta atttgttacg aaatttaagc ccgccataga tatggtgctt
     6001 catgatttgt tcaaccacgc ctttttgacc atccatgtca ctggcaagcg agcgccactt
     6061 cccatctggg cagtgggtca tattttgaac tacaaggtgc gtatgtgaat taggatcatt
     6121 ggcacgagag cttggttgac gaaatgctgc aatgactaaa tttctggtat caatatattc
     6181 aattttgccg tcaacaagtt gcctggcttg tgcaaactcc ttttccattt cttcaacgaa
     6241 ccattctacg gccttatcaa acacctctcc aagccttgga tcagcaccac tttcaagtaa
     6301 aattgaaaaa gactttgggg cagtaagggt catatcaaaa ccggggcgat gatgaatacc
     6361 atccttatcg attcgaccga gttgagtacc atcaggtaat atgcctttca gaagggcaat
     6421 catctgttct ttttctactg cttgcccgtg gatcccaaga attttcgctc catctcctaa
     6481 ccaacgaaca cttttagaat cgttttcata ataattgacg acatctagat agtaggctgc
     6541 ggctccatcg gcactgtcta atggctgaag acttaacatg cttacccccc aatttgttct
     6601 tataaaaact caacaagctc tttttcttcc tcaagctttt tttctcttgc aattggtttt
     6661 gtgatatctt tttttgttga agttgcagcc tctaaagcat catcatggga tgcggcaagg
     6721 atgggatcgc tgtaggtgtc caccaattgc tctacttttt gacgaagtgg atcaggatca
     6781 atgtctcgtg caataaattc ttcatgaatg agaggataat caacgtaatt aagctttatt
     6841 tttgccgcag gaaattcccc tttgacgcgc aaatatcctt gtagatcatt gattacctga
     6901 atttgggttg gtaaaaccaa ttgtttttct ttagtttgac gagaaactga aatcccatca
     6961 cgcatggtgt ttgccccata actgatggac tcattcacct cttcaatttc gtatgtacca
     7021 atattgcggg aggcgtgctc cgcatcagta tgttcgggta agcgtaggaa caatcgagtc
     7081 gaacacagat ttgaaaggga cgcggcacca tcgttaccat aaatggtacg caactgggat
     7141 gcaccgtgat gacctaataa gaagcaacca ccaaatttgc gactttctga tttaactgcg
     7201 gctaaaaaag gtaaggcatg caaggtagcc agctcatcca aaataaacca aacacggcgg
     7261 ttatcatcag gcgctaaact taagagttct ttggtagcag tattaatcca ggccgaaatt
     7321 agtggtctga tggttgggtg tttgcgccca tcagaactga caaacaaaca ggaattattc
     7381 tgctcattca aaatccagtc gcgaatcgaa aagatgtccc catcatcttt caaatacagt
     7441 aaggatttta aataagtagc cattacggtt ttcacattta aagcagtctt ttgtacttta
     7501 tcggatacca gagattctga ttcagtatga cgcagtaaat gatgaattcg acctaagtct
     7561 gctgtgagca aatattgcaa taacatcaga ttggagcgtt taggatcatt ttttagctca
     7621 ttggcagtcg agacgaaaat catacgcgcg gctttaatcc aaaagggatc catggtgtta
     7681 ttgatgggca tcggcatgat ggcctcagca agtgcttcaa gatctgcttt gtcttcgcat
     7741 tctgcccaga cattccagga atggcctctc gtatctaagg gatttaaaat tacatcttga
     7801 tgttcacgat aaaaacggga taaataagtt cctcctttat cataaataat cgcgcgctca
     7861 cccctagctt gtattgtcgt caatagatca cgaatagcaa cagttttacc agatccggtg
     7921 gttccgacta tttgtatatg ctgggtttca gaaccaaagg gcagagatac accaccaatc
     7981 cgataaggag aaatcctgct tgtctttttg atgcactttt gtaacgtgtt ttcatcaact
     8041 aactcactgc cgcgaatgat cttagcttta ctttgatttt cccctctttt ttgcaaccac
     8101 ttaaccatga caattaacat catgacagag gcaaatagtg cctctatcat gctcttaagt
     8161 agagcttgtt ttaattgatt aacaatgccg atgaccatgg gagcttttac aatttgcgct
     8221 gaatacactg gataagattc acccgttggc atgcgaacca cttgcttggc tttgctctgt
     8281 attaaagtca ttgcctgggc tttaacccat tgctggccaa tataacgttg atacgcactg
     8341 gtattaaaat aaaaagcgat gactgagaaa ataaaaaaaa ctatcagcat agcaaggctt
     8401 actttcttac ctacctgtgt gaacatgcgg acattgtgca aaaagatttg accgccgcga
     8461 ataaataatt ttgtaggatt taccgccatc attgactccg aatcgatata aaaaaagtga
     8521 aaatcaggct acaatgaata aaaaggagaa aatccaatgg agaagaacta taaagggcaa
     8581 gtgatgataa gctcacttga tgaattgtcc cctgaacaaa gaaaaaaact gcgtttggca
     8641 tcaatgggaa tcggttctct tgttctttta attgtggtgt tactatttct ttgttttggt
     8701 gatttcccaa gtaacaaaga ctccttattt ttttactgca ccgattggct cttattcctt
     8761 gtgtcacctt tagcggcttt tgggcttggt gcctcttttg gctttgattt gatgctctca
     8821 gatctaggct ttgcattttc ttttggatcc tacggtggtt catcactaaa ccagccgttt
     8881 tcctcacatg agtcgcccaa ttaccatcgt tcaaaccact acggctcttc tgtgagcata
     8941 aacccaagct caggtcggcc gatgtcagga agcagtggta tggatacctc tggaaaccct
     9001 tatggaaccc gatcctggta agcatcattt tacgtccttg tttgcctggg caacgatgac
     9061 atcctgcatg acttgcgacc cgtcttgcac tatgccctca acattcttgg acatctctga
     9121 cttggcgcgt gcaaaatcct tatcaactgc actaaccgaa tctttattga cgcttcctgc
     9181 attgatgttc tttgctcggt cattgaacgt attggtataa tccccaaggg catgatcaac
     9241 ccccgcacta cctgcaatac gacttttaaa tccttcattt ttttggtgca cttgactttc
     9301 gttaatagga tgattttttt gaaattggct gattgattgc gcggtttttt caccaacaaa
     9361 ttgtcttgca taagactgag ctaattcagg atcgtgacga attagccatt ctgcctgttg
     9421 caacccaata gtgccctgac tattaggtgc acgatgatgt gataaccaat caataaatcc
     9481 tgtttgagca tcaagattaa tagatgctgt ttgttcgctg gaagtagttg cttgtcggtg
     9541 ataactctct gattcggaaa aactcgccac agcttcatct cgatactgca tagatttatc
     9601 aaagcctgct gaaaagttat tagccaagcg tccactaaaa tcatcagaag tgcggaaatg
     9661 atcgtccttg gtggcttgtc ttgcctcatt caccacatct gtaaaatggt gttcctcact
     9721 aaagcgccgc gcttcattca tcaagcgtgc gtcttgatgg gattctgatt tgtcccgttc
     9781 atgacgcaca tttcccccaa tctcaatatt accctttgcc ccaggtactg cagaaccggt
     9841 tccaaaacca aacgatcctc ctaaattaat actggcagca cttaaaactt tagtcgcgtc
     9901 atcccgagaa atattatgat cgtgagcaaa ggtatcaatg agattggata tttttgatgc
     9961 cgccgcatta aagcctgctg aagtggatat ttggtgtccc tgcccacttt gttccccatg
    10021 tgattgcgtt tcaccaagct ctgccaggct tctgagtgat gccgcatagt gctctgatga
    10081 agcaattgat ttattgaacc cagcactttt agcactgtcg gataattcag aaaatgcaga
    10141 tcgcgtgctt tctcctaatt gaatattaag cggggtatgc gaggtcgcag ttgccatcgt
    10201 cagtgtttca ctgccatcac gcgatattcg cgcaattgaa ccactatcaa ggcttgtttc
    10261 aataccaccc aatgatattc tggcgttttg atcgttatga aaagaactgc tattaaaccc
    10321 attatgatta gcaaaactgg tatttccgta gctgtaattt cccatttgtg cttcttctgc
    10381 cgcagaggag gcggcatttt gaacaatacc tgttggttgt tgcgtgagtg atacaaaact
    10441 acccacgtgt cgactgatta acatataact caatgtggtt gtcgccaaga ctaagtagcc
    10501 tcccaaggca gccatatttt catagacttg attcatgcct gtttggtagg ccaaagtagt
    10561 cgcccctgtt gacacaaagg acaatgaaaa ctgcgccaaa atagtcatga tgtagttaat
    10621 aacagtaaac atcggtgccc atagggcaag ccagacatac agtgttgcgt aaaattgaaa
    10681 aaaagaaatg ccggagggaa aggggaaaaa aaacaagaca aaaataaaac accctataac
    10741 aatgcaaaat aaaagacttt gcaacatggg caaccaatag gcggacatta gtccaatgtt
    10801 gctgagtgcc gcgggtattt tatcctgtgc tcgactggct gaaaaactgt ctatggccgc
    10861 ttttgaattc acacgtgcgc ccatagaaaa cacgccatcg cgaatggcgt tggccatcat
    10921 attttgccga ataagtgctg cggcatcacc tgacatggcg gttaaatgat tataagcttg
    10981 aggtaagtat ttttcgaaat tagctagggc atctgaatga ttgccaaaag caaaacctgc
    11041 atacttagat ttggcatctt caatcacgcc actccaggca ctgtctaata aactagcggc
    11101 ttccatacac gatttaaatg aaccatcgta aataaaccca cgagcaacag aggcattgga
    11161 tttaaccaat tcccaaatat ctcttgcttg attaatgtct tttaagccat atcgtccata
    11221 catcacatca tagaacacgc attgctgcat gaacttttgc atgtttgcat taaacaacgg
    11281 atcggttatt tttatattac ttgctgataa aaagagcttc gcacccatga tcatgcctgt
    11341 ttggctgtaa tccatatcgt taggtgaatg aaagaagaat tcaaaaagcc gggttatttt
    11401 atcacttagc tgactgctta atcctcctac aacacccaaa actaagggca cgttatcaac
    11461 cgttaaatct ggtcgcagag gatcagttct atcgtggatt tgcaaattgc aggtaggtgt
    11521 tagaataaat gaaataacaa aagcatattt taaaataaag aagaacatac tgcgcacatc
    11581 acgttttaca ataaattggc caacagtcca aaccccacca ataatcagtg ctgttctaaa
    11641 aatcccaagt attccatcat agtgaaacat agctgcggtg gcgttataaa acgccttaag
    11701 taactcacca ccggtaatcg tataaatttg catcgtaaca gccatttcac tcacctcatt
    11761 tgattagccc aactcaaaga ctgagtgagc tctgatgaaa attcgcctac aagcatttgc
    11821 tcgatggttt gagtttcttg aatcatctgc atcgccatgc tcattcgctg atgcgcgcta
    11881 ccttccattt gaaccaagtc gcgacgagcc tgggtgagat cagtttgaaa ctctttcatt
    11941 attgcttctg gatattgcag agctcctgct gcttgtttaa cgagttgcag gttttcattc
    12001 aaatattgaa ataaaatatc gatggcaatg gcttctgagt aacgtgtagt gtcaatcact
    12061 gcactgtcct tcataaaggc catttgaacg ctgaccattt tcatcaccgg atattgtgtg
    12121 gactcaatta atcctttagc ggcctcactt tgctccacat tgtctttaat cttgcttgcc
    12181 atatccaaaa tcagatcacg aacttttgat tcaagaccat gactgatatc aatgttttta
    12241 ctggttaagg tgggttgtaa gcatttgacc ttttcatcac attgatagat ttttacctcg
    12301 ccaccgcgta aaagagcgct gattaaattg ttattactta ctaaggaaga caggcgttgg
    12361 acatgcaccc cttctgcatc gcgagtcaga attaaggtgc ctgataaggt catcatgagt
    12421 tgagctaatt cgatatcatc tgcaaataag ccgtttttct ttaacgcatt ccacgccaca
    12481 ttggtattat caactacctg ctcattgctg ctgttttcat taatcactct gtcgtaatca
    12541 taattactgg agcctttacc acagccttgt cgtgcctcgg cccagtctga aaagagattt
    12601 ttggattgac cgatggattg gcaggcatgt tgttgtgcaa tacgggtgcg tggggctaaa
    12661 cccagtacgg cactttccgc ggttgcgcac gagctgatat tggtttggtt cacccaggta
    12721 gccacgtttt gtaatttggt tgccacatta cctaaaagag gagttgcttg ctctagggcc
    12781 aattggaagg caagaccttg tgagttgttc aatatattct tggtaaaatc gacaaattct
    12841 ttacctttga tgtgagaaaa cccacctaac gtggcatcta tgccgccaca gcctgcggac
    12901 actttaggcc agctcaaacg catgatttgc agattacgta cgctgcttct agcgtataaa
    12961 ttaccgccag tataaaaacc agcacgctgc gcttggtaag catgcggctc tgttacattc
    13021 gcgcccatat taagagcttt aaaataacca gttaaatcct cacctattga tttgctgtac
    13081 acttgtccga tgccaagtgc accgattaac ccacaagaca gaagaatttt tttcataaag
    13141 gcacctcttt gtcatgtatc tggctaattt ttagtaaccg attggttagt tcgccttcat
    13201 caatagtgcc ttcagtaaca agactcgcca cttggctctt tgggttaatc aaaaaaagag
    13261 aaggataaac actgacttga aataccttcg tttgtccttc attcatcacc gcatcaggaa
    13321 aggatggtaa aaagcctcca tcaacagaaa tagcaactac gctaaagcca tagtgttgac
    13381 tcaagcgttt gagcgtgggt gcaaagcgtt gacaatgagg acaactcgaa ctgaaaaaaa
    13441 agaaaaatcc ttgatgtttg gcaagggcat gaagcggtgc attatcaata tcggcgtata
    13501 ggcttgatga aaataacgtt cctaatatta gaaaaatagc taatttattg cgcattgtaa
    13561 tctcccgatt gaaaagcgtt gcttgccatt aaaatgtttt ccttcaattc cgactggctg
    13621 actaagccat aagcaactgg catggttttt ttagatactg gattaagagc aaaaaccgca
    13681 ggaatgtgtt taacacccat ctgagttgcc tgaccggaat caactcgtga gttaggtaac
    13741 atcggggaga tgcgattggt catggcaatt ggaataacag tcatgtgata actgttcgca
    13801 aaatcactca ctacttgggc catgcgctcg ctaaatggtt caccaccttc atagaaatac
    13861 aacaaaccag atgtttgact aatttgagta atcgcctttt ccttttgcat gctgttttgc
    13921 tggttgtaga tatcacgtgc tgcactactg ctcggattaa taagactttc atcctgatcg
    13981 gggtttatta gcagatcgag catccatttc tcagaaaaca gattagcctg tgccacaatc
    14041 aatcgttgta atcgtcttgc acgagcaata ttttcaggag ttggatttaa aatagcttgt
    14101 gcgcgagcct gttgcactct attaccaatc aatttccatg ttttatcagg atcggcaggt
    14161 ttacttacat gtgaaggtgc cactgactcg gtttgtggtt tattcttgac ttcctctttg
    14221 ggatccttat gccaatacca accttcctca tgctcattaa gataaggctg ctcggcgtac
    14281 aaaaaaggac tcacgctaac caacaaaaca aaaaaccatc tagccattga tgtctccttg
    14341 attgtaaaat tgattaaggc gctggcttat tccattggca gtctgttggt aatccggttg
    14401 tttttgttta ttttttacct cctcataaaa ttctgaaaaa tcaatggctt cgaagtgaat
    14461 taattgcaat tgctcaggcg taatacccga gcaatttgaa tatttatttt ggccaaaacc
    14521 aatatgtaac tgatcacgtc ttccttgtac ttgaaccata cgggctaatt tagattggaa
    14581 gacacagtaa gtctggtgat gatcgacaca gaccgagcca atagggagtt ttttgcgttt
    14641 aaaacaatat tcacccgtag gtactaccag tttgttttct cgagcttttc ccagtttttt
    14701 ctcagcatca ctacactgtg ccagctcaag atccagaccc caccccttat cactgcaaca
    14761 atttttaaaa tggagcattg ttgttgaaca ttcaagcaat tgacctttga aaataaaatt
    14821 ggcattgcca tcaaagtctt ttgaggcatc cgaggcggcg gataaggtgg acattgcttt
    14881 tttaaaatcg tcttcattgg ctggggttag ttcatgtttc gcgcaattac catccaaaca
    14941 aaaagcatcc tcgccacaca acagttggtt gtcagtacat tggtttatcg ggcattgata
    15001 cgtttgctga tgggttgtgc aaagtcctgc ttcttctttc acacaagttg aagcagtctg
    15061 ctcacatcct tgattaacta ggttatcgca cgtattttgc tcctgactac caccacaggt
    15121 gtaggatgct ctctctttcc agcaagggcg ggtcaatgga acatcgccaa taatccgtgt
    15181 ttgattgggc tcagtgcatg ttagaggctc agtaatatga cacaacccct ctttttcttt
    15241 gttttgcaaa tgttggcatt ggtcgtccca atactctttg ctttcataaa tttctaccgt
    15301 catcgaaacg gagtgaacat agggcactgt gcagcgaccg aatcgacaat tgccaacaga
    15361 caatgatagg gtgggattgg cgcatgtagc tgtttgctca acaaccacta atttcttttc
    15421 atcaaggaaa ctgaccttca ccatggcgca attggcaggc aatagaatcg ctggtgctgg
    15481 tgctaaatcc ttataaatcg tatagcaagg agttttgcct tgttggcagg tatccgcttg
    15541 tgccagatta actgagactt taaaaggggt attcctcata cctccttttc gcaggtatag
    15601 actgtaactt tctgttttgt agggggaaac atctaacctt aagtgtcttg cacaatgcaa
    15661 tacacctaat accttgctag acaggcatgt tttttcctgc catgagtaat ggcattcttt
    15721 gggttttaaa gagcaggtgg ttttatcggt attttgacca tgcataatcg catctccatt
    15781 ttccgcgatt tgatttaact tttgcattga ttccgaggca ggatttactt gatacaaggg
    15841 gcgatgatta aaactttcgc ctactgcctt tcctgcatca ttctgagcca cggcagtttg
    15901 cgaatcggct tcaagacctg tgcttgcctg cgtgacgcca ctataataat gttcttgcgg
    15961 cagattggct tgatagccag gaaactggct cagatccagt gcttttaata aatcaatgga
    16021 ttgattggta tggcttgttc cggtctgaac gccttcttga tacgcctgat tcaaatcaag
    16081 tgcaaaaacc tgtgaacaaa ggattaaaaa aactaaaacg aagcctttca ttagattaat
    16141 tcccctctta accgaagaat catttgatcc aacacggggt cttctgactg ctcatctccc
    16201 ctcatttttt ccaaagcata gtccagcgat acatcaccat aaagactgtc gtaactcacc
    16261 ggtttgcaat ccatattggc aggacaagca ggggtgtctt tcacataaac cactgcagga
    16321 accatagcga tatcaaaggt tttaaaaaga ataggatcaa gctgcatccc aattcctgtt
    16381 tttttactga gcgtttgaat agccgtcatc gtttctttaa acgaattatg aattagtccc
    16441 cgaatcacag gtgttgctcc acttttttta cattgtaaaa gccaggcttt tagacttttt
    16501 tctggcattg aaaacgataa gaacacgagt acctgactga ctttttttaa gtgggttaca
    16561 atgggctcct gtgtttttat gacttgatgc atctcgccgg taaattctgc aatttgaccc
    16621 gatttttctg aagtctcaag agacttactg atttgcttta tttcatttgt aaaagcattg
    16681 gcgcgatttt ttgtattcgc ctcaatagac gcaatatagg cttcatcttc tgcaagtgca
    16741 ggaaatgaca acaaaaataa tgcaaccaag aaagaagtgt tcattcgtat tgttttcatc
    16801 acatctccta atcgttaaaa ggcgcaacaa ttgcgtttgc gccagatcag atacccaaaa
    16861 tcctcgccct taaacggata ttcgtgccct gcctcccata gggtcgtagc acgcccaagg
    16921 ggataacagg cattagtagt cggtaaagga ttgaccattt gatagcggta acgtgatttg
    16981 ggcaaaatag gggaataatg agtatgacaa atggattttg cgctgcttgt cgaatcgtca
    17041 agtcctactg tgtcttccaa tagtccctgg cggtgcagtt taaaattcat acgctcagac
    17101 agtaagactg atgcctgaac cccgccaaca tgttcttgca catgccccgt taaagggtac
    17161 atgcttccct gagctcctgc gcaccaaaag agtttgtcaa tggcactgcc caataaagcg
    17221 gtacttgaat cagcagcgca agccgcttgt gcgggtaaac taccaaacaa taccgcctca
    17281 ggattaatga cgaaacccag ctcatcgtca ttccacatca catccaattc actcggataa
    17341 gcaatgtcaa agtctccttt ttcaacacaa atcccatcag ttaacacatt caaccaatac
    17401 atcaatggga acttgtacca gtgcacgtgg taaaatgatt gattggataa attactatct
    17461 gtttccaccg cacctttgcg gtaatacttg ccaaaattta aagaaattcc ccctaaatta
    17521 actaagcaaa atggggttct ggttacatcc actaagttaa caggctccca ataacccatt
    17581 gttaatccca atctcggtat aggatttcct gggcattcac aaacaggcag tttgggattt
    17641 ttagtgtctg gcaaatgatt ggaggaaacg agattagctt gccctaaact gaacgggaac
    17701 aaacacgacc aacagacatc agtaatggga tttacaaaac gaccatgaca agatcctgct
    17761 tgggtcaacc cagaagctaa aaaagcaata agaataaaaa aggctttcat acagtcacct
    17821 cattaatttg caaccgcttc cctgcttgaa aaacccgcgc cggcaaatac tttatttgaa
    17881 atttggcaac caaaaatcca tttaaatcaa aataaatagc ttgctttaat tgattcgcaa
    17941 cttcctttac agagcctgag gtgaggatta attttacttt ttggtgctgc gttaattcct
    18001 gggtaaccca tgcaacctgt gcctcatcat ccccgtcaaa aaacaggaga gtgctactca
    18061 agcccactct atccaggggg ttaattacag tgccttgttt aacaatcact tggccgtgac
    18121 tgtccttcac atcgtaaggc acagcaagtg atggattaaa aaaccacgtt ctattgtctt
    18181 ctgctctcgg caaacgaata ggtgttgggc gtgccacatg ttcttttacc cgttttttaa
    18241 actcagattg tacggtcttc cattccccat taacctgcat ccccttcatt ttttgctgga
    18301 tgtactctaa aaaatctatt tcagcaattt caaaggtttt gccaaagaca ccatagtctt
    18361 tagcctctgc aaaagggaga tagagcatgc aaataatcaa cagaagcttt ttcacgattt
    18421 atgctccaat ttgatcatcg tcatgagggt ggctgtataa tcagtgctgc ctttaatgac
    18481 cgcttctctt ggtaataaca ccaacgattt ggaatgggac aagtcttgta acgctgattc
    18541 caaacgatgc gaaaatgctt taatttctgc ttctttctca aggttggaat gatttttttg
    18601 cgcttcctct ttgataaatt gggaggtgat tgacaagata tcaatggttg caatatctgg
    18661 ccgcctcaaa gcactaaaaa aaatcccatt aactaagata ctggtgatga gtgcggtcaa
    18721 aagagatact tgagttgtct taaacatagc catacacctc cagggcaact ttggaaatgg
    18781 catcagccaa tggcaaacct gttgccatta atcgtttcaa ggcctcgact tcaggaccac
    18841 gtgtagtgtt taagacgcgt gaaaatggat cgacaatcaa acgatgcact gttgaattct
    18901 cttcacacat cattaaaaac tcagagtatt cattagttat tttaaggctt cggattaaac
    18961 gctcgccata agcatccaac tgattactcg tttttaaagt gtcaatcgta cttttggagg
    19021 cacctaaaaa gattttataa taggcgttgt cgtaacacat tttggcagtt ggattgtttt
    19081 cataatcatc taagccatga gtcactgtaa taaaattacc accgtattta ggcgcacgcc
    19141 tatagccctc gttaacaaag ttagcactgc cacccgtacc attgtctgaa agtaattcgt
    19201 aggattcatc aatcaagcag cttttgggaa tgtgctttgg cgtgtaatac atcgcattgg
    19261 tgatttgata cattaagatt ttcaatacaa tgcgctgcaa atccttattt ccatcaagac
    19321 cacccaactc taaaatgact aaatttcttt taaaatcgag cgaacaaggc ggttcaaaat
    19381 aactgccata acgaccgttt ttagtatagc tatacaacag gcgcccaata ttttgagaaa
    19441 taggatcgtt actactttct aagtgatgag caataagagt aatagttgta gcattgtgat
    19501 gttgtcgcca catcgcctca atggctttct caatatgact tcgttcttca tcactgacgt
    19561 tacctgatgg tcttgccatc atacctacaa gttgtattag ctgattgtga acgtctttaa
    19621 atgcagtatc atttttggct tgtgcatcaa ttgtagaaaa gaggtttagg ctaatttcag
    19681 tgtcatgatt aaaatcaata agctgtccgt tcaacatctc acaagattta gcgtatgaac
    19741 cgcccacatc aatgatataa acaaagcccc cctgggataa cagactttga atgtagtcat
    19801 tcattaaaaa ggattttcct tttccaggag gagctacaat agcgacatta tagtttctga
    19861 ctacgttgtc aaaaaaataa atagcggtaa attgccctcg tctttgtgga tagacctgag
    19921 caaatcgtcc tgcccctttc cattccccct ggataggtaa taagttaacc gtattaaaac
    19981 tggttaaagg tcttacccgt ccaaatgatt tgtaatcatc aaacatacct tcagcaggtg
    20041 caaagggcat ggaggctaga agtgtttgta actgcaaacc tgttggcgtg cgtaaatcaa
    20101 attggttacc acgaaataca tccttggcac gtcgtacatc gcgacggaca ttggcaggtg
    20161 ttgtaaacaa taaaacgtta taataggaat caaccaaaga atcatcgcca ctgagccgct
    20221 ctcttaactc ctcaatttct gcgtattttt tgttaaaatt tttgacccat ttggcaataa
    20281 aaggttgttt ggcattttgc ccttcatcag catacttggc atctaatgcc gccatcacct
    20341 tgtctttatc tttaattcgt attgcaaaac taaaaagaaa gggacaactt atttgcaaag
    20401 aggtattaaa catttttcca aataaatcac ccagttgcca ttgcacaggg gatttaggat
    20461 attgcctaac ggacaagcat ttaatcaccc tcgtatcttc ttctcgctca atctctattt
    20521 gattggattt aacccgcata ctcgcttcaa tgtcagtcag ttgaaaacga atttcagtat
    20581 tggtatcgta attggttttt tcttcataca agctgtcggt tggaaagagc cactcccgct
    20641 ttaagctaat cacttcttca atagacagtt ctttacaaat aatattgact gactttagat
    20701 tgttgctgat gtcttcgcgc aaactaccaa gcaacaagcg atcgtcttct atggatttgc
    20761 gcggaattga aatacataaa aataaacgaa aatcacgcaa gacaaaattg ctttctttag
    20821 ttaatgagct gtacacccct ttgcggtaaa attcagctcg tcggtgtgcc agggctttta
    20881 aaacctcact gccttgattg cgttgatgtt ccatttcatc aatcatgtgg ccaattttag
    20941 gcgatgccca aaacaaagca tgaaaacaac tttccggtgg caaaatatcc gttaatatac
    21001 tggtgagaat agtcactgtt tcttcactgg caccaatcag tgtcgagcat tcaaacatca
    21061 tatgagatgc ctgtttgtaa ggataaatat cagcttctga atcgtaaacc tcgtcaggta
    21121 aataaggtgc taagcaataa gtatccaaca gcgcttcgat ttgcttttta tgatgcgcat
    21181 cagtcatgcc aagctcttct cgcaatgttt ccaatagcga gcctgttgca tgacttaaaa
    21241 tagtgcttgt ttttttaact gcaagacgcg ctttttttat agttgacaac ataatggctc
    21301 cccttatttt aaagccaatt gtgactgctg catccactgt ccttccttaa caacgctgta
    21361 cactcgattg gcttgatgat aattgccatc agtgtcttca taaggtgcta tccaaagagg
    21421 catcacccct tctccataac gcacaggctg accaggtcgc ccatccatca ccaaaggatt
    21481 tcggctgggg gttacagcca gggatttgcc cttaccattc accatgtcat aaacctgatc
    21541 catacgtttg cacgttcctc cattgggagc tgggcaatca aagtcctcat tcaatttggc
    21601 gcaaccggtc aaaacaacac agggcaacag taataaagta gttaaaattt tcatgatcta
    21661 tatatcctta gaaagagtgg tttttataga aaaattggtt ggcagctttt tcttcagcag
    21721 tctcagactc ggcaggggct tcaaaagcta ctttggaatt ttggctttct tctggttgtt
    21781 caggggcatt agtgtccgtt cccccatcaa gccaaaaacc cttaagaaaa gttacatcta
    21841 ctgtaacgat tggaggcaat tgaataatcg ggtggtacat ttcagcacgc ttgatgttgt
    21901 attgcgcata catttttgca gcgcccgatc cgccactaga aacagccgcg agaggaattt
    21961 ttcctgcttg aatggttgat acacttccta gaggcgaggt gctgtaatca gtggaatatt
    22021 gctggccaat attgcccatg ctttcccaga agttccccca aaaagctttt ttcaccatcg
    22081 gttcatcacg ccataccgca cgcccacgaa ttccgttttt agaatctgaa atgatgcctg
    22141 taacctggat gtcgatattg gtgccattgg aatgaatgca acttaatcgt tcggtacgaa
    22201 actttcctcg ctcactggaa atatcgccaa ttacagaagc acttaccata cagcctttaa
    22261 gtggtgccct gtatttattc ggcatcactc catcatcgac aatttgaaat atcataatgt
    22321 cgggatttgc ttggcttaaa actcccgcag atgcatctgc accttgtaaa acaactgctt
    22381 tagcaaaggt gttggagaag acataattat tgggtgtttt gattcgtggc ttggattttt
    22441 tatttaactt ggctgtgtat tgaataaatc ccgaatccat ctccatggag ttgctcgctg
    22501 ccgcttcatc tgctcggggt aacaacccat tttgaggctc attgtttttt aatgtcccat
    22561 ctattggggt agtacgctcc atttgtagct taactatttg atgctttaat tcagaaagtg
    22621 tggatttcat ttcagatagt tcatcttttt gcgaggtaat gagcttgctt tgcttgtctt
    22681 tttcatcacc taatgccttg aggtttttat caaagagctc tgattttgca agctcagctc
    22741 gccaggcatt ttgtgttttc tcaatccaat gggattcatt agtggcagta gatatcgggc
    22801 tggctaagct gtgtttttta taagcgggtt tatcaacctc tctggattta actgtcttgt
    22861 ttcccaataa ggcaaagcac gcaatcacca acactataac gccgataaca atccctaaaa
    22921 agatctgttg ttgtttttta agttgaatag acatgttagc taatcctgta caatcgagta
    22981 gtttcaaacg gcgctaaatg ggttttagca agcgccaccc ctttggttcc aggccaatta
    23041 aaccaggatt ccttggcatc aataggctgg ttggttacgt tttttaactc aaaaatttca
    23101 ccccgcatac gattgccatt aactgtcaat aagcgtttta gttgtgtttt ttgtgcttta
    23161 tagactgaag gatttttggg tattgtttgg gtaaaacctt ctggcaaata cccattaaca
    23221 agcgctcgta aaaaaccaac catcaccttt tcataacttg atgtatgtgg agcgcgggca
    23281 cgaattacag gatttctgta ggatttaaaa acgattgttt gtgacgcaat gggctttggt
    23341 tctacacgca cgttgtaaaa aagacctttt tcagtcagca aattgatagt aaaagctcgt
    23401 gtgtggtata gaggcgatgg caaaaaagta agaatacccg tcgtatcatc aattaatttg
    23461 caattcgcct tcccattgca tgcatcaacc agggtgttgc caggtgcttt tatttgctga
    23521 atgcgatcat cctctaacat aagattattg ggttctttaa ttgaggcatt aatgaaaata
    23581 tcttcataat ttctgactgt ttttatttga gcaccttctg ctgttgctat taataagcct
    23641 aagctgaata tcattgccat ttgtttcatg attacacctt ctcaagattc gttagtttca
    23701 acaggccata ctcataggaa tacctaatca aaaaagtctc ccgtacatca gacatcaaat
    23761 ccgcgccaac aaaacgcttc atctgtccca ttacttttac gctcaagtgt ttgatatcaa
    23821 tttcaaaggt cgatggataa aacacgctgg ataaatgttc gtgattaatt tgttcgactt
    23881 ccttaaccaa ttgcgccctg atgtccccat acagtgaggg agctacatag cctaagagcg
    23941 cattaaattg gtaagtggct gaacttgaag tgatattaaa acgaagttgc gttaagaaat
    24001 tggtcatgtc tcttaaataa ccttccgaaa cacctgttcc agaaagtgta aattcttgag
    24061 atattttagg tgggatgaaa tgggtttcat gtttgctatg agcataatgc aataagacca
    24121 caatggtaat tgattgcatg aatgtcatag ctagcagcac actactaata cctatgaata
    24181 aaaccctaat ctttttttcc ttcattaatt ctgatttttt ttgttctatt ttcatctgtt
    24241 accccaaaaa cgctctaatc catgacggtg gtgttgcccg taacttaggt gatagagaaa
    24301 agaaccaata aaaaaggtgg atataaaaat agggaccttc attacccttc atgcgtttca
    24361 taagaaatag aaacgcacag gttagaatca atgaggtaac aaaaaaacca caaacagccc
    24421 caaatacgta gagagttagt gctcctacca tgacctcatc gagtgtaaaa ataatcaatc
    24481 gataaggctc attaagatat tggggtgttt tgtattttct cggatcttcc atcttaaacc
    24541 cctgctagca ttgcaacgac atttagaaaa atagccatcg ccccaacgcc gccaagcgtt
    24601 ttaatatttc gagtaaacat caaggtaaca acagccgcta cagcttctcc gacataaaga
    24661 taggttttta tcgaaccatt gtaggtatcc ttaactactt cttctgcagc ggataaagca
    24721 tccgctgcaa aggttccttg agccattatt agcaagcaaa taagtatgaa aatctttcca
    24781 atgtgagcat taatactgct taacacgtta cttctgaact gatttaataa agacatgtta
    24841 tccctccttt ttaatggtga ttgaggattg attgctgcat tgatgggcaa aatttctttg
    24901 ttggatcagc caaaccatcg tgcttttcag attgaatttt ttgataaatt tcataacggt
    24961 ggatggctac tgaattgggt gcattaaacc caatgcgtac ctgattccct ttacaacata
    25021 gaactgtgat aaatatatct tctccaataa caatgctttc accgactctt ctagttaaac
    25081 tcaacatctt cttctccttt ttagttaact ttcatattta aaatgtgttt cattttcagt
    25141 aattgggttt tagccacttc agggttattg tttttgggag ctgcatcagg tacaaaaaat
    25201 gaacttctct tggaacaatt tttacaaaaa tcaataaatt ggggtaaggt tggcggtagt
    25261 tccttatttt ttcgacataa atcaattgcc atatcaagaa tgttatccgc ataggtaaat
    25321 agtccttgtt gccattcacc tttaacaaaa actaaaaact catcgctttt aaattgacta
    25381 cgccaaacct gtccgtacat agctgcaaac ctcaaaaata atcgatcaat gcgcttgcga
    25441 ccttcctcgg taggcgctaa ggtcgatgat gttgtcatcg gtttcttctt caatgcctga
    25501 tttacatgac tcccagaagc tgtctctaat gggttgtttc ttataatttg tttcatggac
    25561 tgcattattt gtctcctgac acgtatcact ttgaatttca tcttcccaac aatgttgtgc
    25621 taaccaattg gcaggatatt tccaagcagc aacccattgg ccttggctat gctgttgttg
    25681 ataaaactgg atttgttgtt gtaaagccga ataaatttgt attggcaact caggtgtgag
    25741 attaagcgct tgaaatgctt cccatgcttt ttgctttgat ttttttagcg ggtacaaatc
    25801 ccaaaatttt tcgaat
//
LOCUS       DACVWI010000026        25717 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.026, whole genome shotgun sequence.
ACCESSION   DACVWI010000026 DACVWI010000000
VERSION     DACVWI010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 25717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25717
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.026"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            1..120
                     /locus_tag="JBH85_03985"
     CDS             1..120
                     /locus_tag="JBH85_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019217873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopeptide precursor"
                     /protein_id="HAU0945352.1"
                     /translation="MYFALLLIVVTLTSLCLSACGQKGPLYLPEQEKKTTTNQ"
     gene            130..963
                     /gene="dapF"
                     /locus_tag="JBH85_03990"
     CDS             130..963
                     /gene="dapF"
                     /locus_tag="JBH85_03990"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HAU0945353.1"
                     /translation="MGIKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGF
                     DQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATK
                     TTLMDLIINEDNSVSVNMGVPRLAPGEIPLLADRQSPEYSLELNNGNTVNLHAISVGN
                     PHAVLLVENIDTAPVNSLGQQISFHPQFPEQVNVGFMQIINHEKINLRVYERGCGETI
                     ACGSGAVAAAAIARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTLL
                     S"
     gene            1274..3964
                     /locus_tag="JBH85_03995"
     CDS             1274..3964
                     /locus_tag="JBH85_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0365 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945354.1"
                     /translation="MVDFDKPVSKNDILASLLLIADLNRPSLNQTLSWEQALKSFLSL
                     NDPLIKTEIFIKWLSQLNPDQLQSSPEIVLLLKHIVEQKLLPYTLKKILIQRENFTTS
                     QINWLCNHCLIVAPDQTTLPDIIKLGSWSWLENHMKRNELLNFDLLKIAILNKDYLAS
                     INNSKESQLDFIYALNANKFNYQQILELIALAQDSQIKSLLITCLLSKKEYLDNLKEK
                     SFLAHLNQSEFHSPPRLNPLIHQLNLSCLTVAQIELLQPEACVTLLCSIPHFHQLSEK
                     QVEKILLKYPKPDMIAYWLNHYSSRPNAHFILAHLMNLVDVHVVDELNKMDSTKKETI
                     IMNMVEHLELFDPTHPLLINQNEEKRLITAIQRYLYGQHHDAYVTYIKLLVYKLLNRN
                     YQFSPQAMQLLICLNNLEEFKELNNKIAYLTNYYLRASAQSGDSSLFYNDSRINITSM
                     TQLVQLAPKIPTKSKEKSLLSSIFCGIKISESSVMTPTNDIPEHPLINKLIKNKRTVK
                     SIDYFLMHYKGDKQVLSKIINDYLSYYVQEGCTEIHRRSIYHLIVLMSLSDISASVRE
                     AIFTAFLNYPELHDEQINFSLFVYDAKRTIRHFGAQASEDSYARVIDLCEGALKKLNP
                     NKHKEIISIATQALTEAKIELSFGENTGFIAQLISRLKRCWYYGWTGFFSPNPPTFVA
                     AIDSPIKPSEKKTSPLLQQRKYFTTKLETNLSIILDDIKSGYTQQKLNELIEALSIFS
                     LQSNPKNELKIRQKLHRLFHYLLLESKNDLTLDAWLIKNQQLLIANRFRLLEMQLMKG
                     ARNEVESLLKEFDEDSAHFSPISKEFTHSLPEQNPYKCESVSSNQTPGATILDSATEL
                     ATSLKSTLGNLGVFFSNNIMSAIYPNNKSTPQSTSTMISP"
     gene            4139..4444
                     /locus_tag="JBH85_04000"
     CDS             4139..4444
                     /locus_tag="JBH85_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HAU0945355.1"
                     /translation="MDERRKYFRLKNHGEINASLDNNSIEIVEISSNGAVVVKQKTDI
                     PKEGVLKLQIHNFIMELCYEVIRAEDNNIVLHFTKEDETNKLFLVLKRLRDERKNKT"
     gene            complement(4554..5399)
                     /locus_tag="JBH85_04005"
     CDS             complement(4554..5399)
                     /locus_tag="JBH85_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HAU0945356.1"
                     /translation="MNNLAQQIEALPITLAGRFIYRFLPYRRRLIFSNISQVYNDQLN
                     ESQKKRLAKAYYSHLAKSLKEALQLRFMSEKKLRAQVEVIGHEKMLAVVAQKKGVLVV
                     TGHFGNWEFAPLGGVLNFKEFKGQFHFIRRTLRFKFIERIMFKNYYQAGLNVIPKKNS
                     LEQVCVALEQNHAVIFVLDQHASLVNRDGIAVEFFGKKAGTYRSLATISRHTGIPVIP
                     AASYRLPNGKHVLEFHDPIPWKDYDTTQESLYRNTLAYNQALEKIILAHPEQWNWMHK
                     RWKLS"
     gene            complement(5392..6669)
                     /locus_tag="JBH85_04010"
     CDS             complement(5392..6669)
                     /locus_tag="JBH85_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HAU0945357.1"
                     /translation="MSQANRVFITGRSALTASGATADETWNAIISGQCGIDEINFWEL
                     SEWSHRLGGEIKDFQPSKMLPDRKLIKVISRQDIMGINAAVQAVEHSKMIAYRDSLAD
                     ADLFNEQTAIYVGSPGNKYFQQYDFIPLLAKTHGDMRSFANQLFDEVHPMWLLRILPN
                     NVLAYTGITYGFKGPNHNVTNHAVGGTQAILEAYHAIRSGQAERAVVVAYDIGTEPQG
                     LFYYEKLGVVSNRHLKPFDKEHDGTILAEGAAALVLESEASVKSRAATCYGEIVGGLS
                     ASEATGLFSIEADGQHLASLMGQTLSTSGINSEEIGLIVTHGNGNSKSDDSEALAIKS
                     VFKQEEVPATAFKWSMGHTLCASGVLDAVLTTYALETKCVPGIANFQQIAPTCEGLSV
                     SREHREIISNSYAMMINRGFASMNVCLVIKACE"
     gene            complement(6670..7962)
                     /locus_tag="JBH85_04015"
     CDS             complement(6670..7962)
                     /locus_tag="JBH85_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HAU0945358.1"
                     /translation="MKRRVAITGLGVVSPLGNDVSTTWMNLIAGHSGIDSIKQFDASA
                     FPTTIAAEVKNFSPDTSISGKHTRFIMSFTHFALEAARQAFEDASIFPTKQTSDRWGI
                     VTGSGMMTAEFEYLTRFQQACAAGGEIDWGKLQSNSRDFYNLVDFGKTTSNSGLSLLI
                     QQYGITGYASSVHTACASGGQALGLAMQVIRRGEADFMLAGGFDSMINPLGLSSFCLL
                     GALSTYNETPQTASRPFDATRNGFVLGEGAAFLILEEWSKAKARGAKIYAELAGEGNS
                     LSSYRITDSHPNGDGAIQAIKRALEDAGVQPRDVDYINAHGTSTKMNDLSETNAIKVV
                     FGDRIANLPVSSTKSQTGHLIAAAGALEAVLSVKSIEQAQVPKTANLKTPDPECDLDY
                     VVDGPREKSLGVVLSNSFGFGGSNSCLLFKHPEFEETK"
     gene            complement(7967..8866)
                     /locus_tag="JBH85_04020"
     CDS             complement(7967..8866)
                     /locus_tag="JBH85_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymyristoyl-ACP dehydratase"
                     /protein_id="HAU0945359.1"
                     /translation="MMRFLFVDRIVQLSPGEWIKGIKHVTRDDAYLTTDDHGRLCFMP
                     SLIGETLGQLAAWNVMQHNHFTARPVAGVVSSARLYRPAYVGETILLESNIDSLDEKA
                     VQYHSIAKVGNDIIFTIDGALGPMLPMTEFISTEVIRQQFAEIYRPGDWSSVLALSSP
                     VLIEENCSDCGMINSSMQFDRILASQPGISLIAEKRITRSASYFPDHFPKRPVLPMTV
                     LLECKLNLAKEFIARAKYDRAYRISELRKIKMNEFVHPGDVVVCQVKVKQQMDDELIL
                     SYRCEVDGKRVCVVDIVLIPKGK"
     gene            complement(8863..9276)
                     /locus_tag="JBH85_04025"
     CDS             complement(8863..9276)
                     /locus_tag="JBH85_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAU0945360.1"
                     /translation="MNVAEVYPKVREIIADVLVIDEEEISLNSSLIEDLGAESIDFLD
                     LVFQLEKEFKIKIPRGQLEKNARGDLAEDEFEKGGILTTSGLQALKNYLSEVPADRFK
                     ENMKVNEIPVLFTVETFCKLVISAIAQQQATETVA"
     gene            complement(9347..10105)
                     /gene="fabL"
                     /locus_tag="JBH85_04030"
     CDS             complement(9347..10105)
                     /gene="fabL"
                     /locus_tag="JBH85_04030"
                     /EC_number="1.3.1.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabL"
                     /protein_id="HAU0945361.1"
                     /translation="MSSLVFSGKVGLITGGARGIGKATALKLAQSGCDIAIVYYNSSD
                     EAQSLVNEITGMGRKAVALQADVADCQSVKEMFSQFREHFKHLNFLVSNAASGVLKPA
                     LKMSTKHWRWCLETNALALNHLVTEGLALMPKNSRVIALSSLGASRAIPNYAFIGASK
                     AALEALVRSLSLELASYGITVNTVSAGVVDTDALKHFPNREQLLDEYQAHALADRALT
                     PEDVANAIYLLCLPEAAMINAHTLYVDAGYSQVG"
     gene            10267..11634
                     /locus_tag="JBH85_04035"
     CDS             10267..11634
                     /locus_tag="JBH85_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945362.1"
                     /translation="MKYSWNKTVFPIAAIFSFRLLGLFLLIPVFTLYATNLKGATPTL
                     IGLALGSYGLAQGLLQIPFGMLSDKLGRKPMIAIGLLLFAGGSLLGAVTHSIAGMITA
                     RILQGAGAIGSVLIALLADLTLDEQRTKAMAIVGITIGTSFSLAMIISPALTHYYGLS
                     GVFYLTAALAVLGIMILYLIIPNPSKEQFHADSEPSLSLIKPVVTDQHLQRLNFGIFC
                     QHFILTATFFAIPMLLKYQIENGHLHQQWHFYLPLMLFSFILMVPFIIISERKKRLKT
                     VFVISVLLTTFTQGLLVLASQNWYWFCILMFVYFVSFNVLEATLPSLVSKLASPGSKG
                     TAMGIYSTSQFLGIFFGGSLAGILYQWYDNQAIFLINMILSCLWFIISLSMKSNVYFS
                     TLILPFTANNEESKLVVNQLLKVAGIKEVILSKDENTLYVRVDNEEYSTGSAEKILHQ
                     STIYQ"
     gene            11709..12197
                     /gene="ssb"
                     /locus_tag="JBH85_04040"
     CDS             11709..12197
                     /gene="ssb"
                     /locus_tag="JBH85_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAU0945363.1"
                     /translation="MISMARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWK
                     DKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVEGSLRTRKWQDQQGQDRYTT
                     EIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDI
                     PF"
     gene            complement(12265..12648)
                     /locus_tag="JBH85_04045"
     CDS             complement(12265..12648)
                     /locus_tag="JBH85_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HAU0945364.1"
                     /translation="MRHRNSGRSFSRTSSHRKAMFSNMCCSLIEHELIRTTLPKAKDL
                     RRYIEPLITVSKSDSVASRRRAFDILRSKSAVGKLFTDLGPRFAKRPGGYIRIIKCGY
                     RDGDNAPMAIVELMDRPVSSDDTEE"
     gene            complement(12667..13659)
                     /gene="rpoA"
                     /locus_tag="JBH85_04050"
     CDS             complement(12667..13659)
                     /gene="rpoA"
                     /locus_tag="JBH85_04050"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HAU0945365.1"
                     /translation="MYTEINEMLTPKVLKVQAESPYKARIVLEPLERGFGHTLGNALR
                     RILLSSMPGSAITEASIDGVLHEYSTIEGVQEDVVDLLLNLKSVAIKLTVGNEAQITL
                     NKEGPCQVTAGDIQLTHGQEIINPELVIANLNEKGKLNMTLKVERGIGFHNTDAFVRY
                     HDDEIEKKTVGKLKIDNSFSPVKKVAYFVDSARVENRTDLDKLTIELETNGTIDAEEA
                     IRISASILQRQLHAFVDMKFEESRADNKERNDFDPVLLRSVDDLELTVRSANCLKAEN
                     IHYIGDLVQRTESELLKTPNLGKKSLTEIKDVLASRSLSLGMKLENWPPASLGE"
     gene            complement(13678..14298)
                     /gene="rpsD"
                     /locus_tag="JBH85_04055"
     CDS             complement(13678..14298)
                     /gene="rpsD"
                     /locus_tag="JBH85_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HAU0945366.1"
                     /translation="MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHGDK
                     KPRLNSYGIQLREKQKIRRLYGILEKQFRNYYKKAARQKGSTGENLMALLERRLDNVV
                     YRMGFASTRAEARQLVAHKAILVNDKVVNVPSFLVNPGDTVSVRQKAKNQGRIQAALA
                     LSEQRAPCDWITVDTGSFKGTFSTAPTLMDLSSDYNVNLVVELYSK"
     gene            complement(14315..14713)
                     /gene="rpsK"
                     /locus_tag="JBH85_04060"
     CDS             complement(14315..14713)
                     /gene="rpsK"
                     /locus_tag="JBH85_04060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003633055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HAU0945367.1"
                     /translation="MAITKSKQQKTRKKVKRVVSDGIVHIHASFNNTIVTFTDRQGNA
                     LCWATSGGSGFRGSRKSTPYAAQVATERAAAVAKEYGMKSVAVFVHGPGPGRESTIRE
                     LITQDFKIVEITDVTGIPHNGCKPPKKRRV"
     gene            complement(14737..15093)
                     /gene="rpsM"
                     /locus_tag="JBH85_04065"
     CDS             complement(14737..15093)
                     /gene="rpsM"
                     /locus_tag="JBH85_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HAU0945368.1"
                     /translation="MARIAGVNIPDHKHVVIALTAIYGIGKTTSLKLCKTVDIDPSVK
                     VSQLSDAQLESLRTEIAKITVEGDLRRVVTMNIKRLMDLGCYRGLRHRRGLPLRGQRT
                     KTNARTRKGRRKGTSS"
     gene            complement(15171..15284)
                     /gene="rpmJ"
                     /locus_tag="JBH85_04070"
     CDS             complement(15171..15284)
                     /gene="rpmJ"
                     /locus_tag="JBH85_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HAU0945369.1"
                     /translation="MKVRASVKRICRNCKIIKRSGTIRVICKDARHKQKQG"
     gene            complement(15301..16635)
                     /gene="secY"
                     /locus_tag="JBH85_04075"
     CDS             complement(15301..16635)
                     /gene="secY"
                     /locus_tag="JBH85_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HAU0945370.1"
                     /translation="MTMKNQKHNGSKPRGGLAELKSRLMFVVLGILVYRLGAHIPVPG
                     LDPAKLANFFSEQQNTIFGLFNMFSGGALSRVTVFAIGIMPYISASIIIQLFSVVSPK
                     LEQLKKEGESGRRKINQYTRYLTLLLSIFQSMGMARWLASQQIAMQPDFSFYFTAVVT
                     LVTGTMFLMWLGEQITEKGVGNGISLIIFSGIVSSMPNAIGSVLQQVKEGQMQALTLV
                     IIAAVVIVVTGFVVFMERAQRRIRVNYAQRTQGRKVYAAQTSHLPLKINMSGVIPPIF
                     ASSIILLPATLAQFFSQTKGLGWLSDVGMALSPGQPLYLIVYAAAILFFAFFYAALVF
                     NPKDTADNLKKSGAYIPGIRPGEQTTKYIDSVMTRLTLVGAIYLVLVCLLPQILMYTW
                     HVPFYFGGTSLLIIVVVIMDFVAQVQAHLMTQQYDSLLKKANFRGTKLPGLL"
     gene            complement(16632..17066)
                     /gene="rplO"
                     /locus_tag="JBH85_04080"
     CDS             complement(16632..17066)
                     /gene="rplO"
                     /locus_tag="JBH85_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HAU0945371.1"
                     /translation="MNLNTLSPDPGSRPSRRRVGRGIGSGLGKTCGKGHKGQKSRAGG
                     YHKINFEGGQMPIQRRLPKMGFKSRVGRTIDEVSLGELAKLNDEVIDLVALRKAGLIN
                     NSIKDVKVILSGELTAAIKLKGLRVTKGARSAIESLGGSIEE"
     gene            complement(17066..17251)
                     /gene="rpmD"
                     /locus_tag="JBH85_04085"
     CDS             complement(17066..17251)
                     /gene="rpmD"
                     /locus_tag="JBH85_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HAU0945372.1"
                     /translation="MGKKIKITLVKSTIGRKPKHVAIAKQLGLGKTNSSVVHSDTPAI
                     RGLVNEINYLLLVEESA"
     gene            complement(17254..17760)
                     /locus_tag="JBH85_04090"
     CDS             complement(17254..17760)
                     /locus_tag="JBH85_04090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HAU0945373.1"
                     /translation="MSFDELPKSDGYQEKLVSVTRTAKVVKGGRVFGFAVLVVVGDGK
                     GKVGFGRGKAREVPIAIQKAMDQAKKNMVYIPLSGTTIFHEITWNYGASKVFMKPASE
                     GTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRGK
                     TVEEVMAG"
     gene            complement(17770..18129)
                     /locus_tag="JBH85_04095"
     CDS             complement(17770..18129)
                     /locus_tag="JBH85_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094389.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HAU0945374.1"
                     /translation="MNKQNARHRRGLKAKALIRKTGRSRLVVYRSGVHIYSQIVKSDQ
                     LGDKVLVASSTIDKELRSSLTGKSKVEQASLVGQLLGKRAKAAGITQVAFDRAGYKYH
                     GRVKALAEGAREAGLDF"
     gene            complement(18140..18679)
                     /gene="rplF"
                     /locus_tag="JBH85_04100"
     CDS             complement(18140..18679)
                     /gene="rplF"
                     /locus_tag="JBH85_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HAU0945375.1"
                     /translation="MSRVAKAPVIHSANVEVTFVDGVITVKGPKGILTQKINKLVNIQ
                     HSKESNKLEFSPASNDPMGWAQAGTARALVRNMVQGVTEGYTVTLELVGVGYRAQSKD
                     KSISLSLGYSHSIEYDLPKGVTVETPNNTTILLKGVDKQVLGQIASEIRAFRPPEPYK
                     GKGVKYAGEQIVRKEAKKK"
     gene            complement(18697..19092)
                     /gene="rpsH"
                     /locus_tag="JBH85_04105"
     CDS             complement(18697..19092)
                     /gene="rpsH"
                     /locus_tag="JBH85_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094387.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HAU0945376.1"
                     /translation="MSMHDPIADMLTRIRNGQQAKHQQVTLVSSKLKEEIARVLKEEG
                     YIQDFFIETLPNGLKSITLKLKYYHGRPVIEFIKRISRPGLRVYKSYKDLHSIPGFGV
                     AILSTSKGIMTHVSAKVKGVGGEVICEVA"
     gene            complement(19115..19417)
                     /gene="rpsN"
                     /locus_tag="JBH85_04110"
     CDS             complement(19115..19417)
                     /gene="rpsN"
                     /locus_tag="JBH85_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094386.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HAU0945377.1"
                     /translation="MAKKSMLMRESKRAKLVEKYRQRRNELKQLIKSSDDFQVIMESQ
                     AKLAKLPVNSNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW"
     gene            complement(19430..19981)
                     /gene="rplE"
                     /locus_tag="JBH85_04115"
     CDS             complement(19430..19981)
                     /gene="rplE"
                     /locus_tag="JBH85_04115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094385.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HAU0945378.1"
                     /translation="MARLKEFYKKDVVTMMMKRFNYSSVMEVPRILKITLNMGVGEAV
                     GDKKVMNHAIEDMTLISGQKPVVTKARKSIAGFKIREGWPIGCKVTLRRERMYEFLDR
                     LISITLPRVRDFRGLNPKSFDGTGNYSMGIHEQIVFPEIDYDKTDGIRGLDICITTSA
                     KTNEEAKALLEAFNLPLKDKDRK"
     gene            complement(19997..20326)
                     /gene="rplX"
                     /locus_tag="JBH85_04120"
     CDS             complement(19997..20326)
                     /gene="rplX"
                     /locus_tag="JBH85_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HAU0945379.1"
                     /translation="MKRIKSGDEVIVIAGKSKGHIGKVLRVIDDAVVVEGGNLIKKHI
                     KPNPQKPENKGGIIAREAPLHVSNVAHYNPVTKKADKVGFKYLESNGVSKKVRYYKSN
                     NEIIDRI"
     gene            complement(20339..20704)
                     /gene="rplN"
                     /locus_tag="JBH85_04125"
     CDS             complement(20339..20704)
                     /gene="rplN"
                     /locus_tag="JBH85_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HAU0945380.1"
                     /translation="MIQMQTVLEVADNSGARKVMCIKVLGGSHRRYARVGDVIKVSVK
                     DAIPRSKVKKGAVMRAVVVRTAQGVRRDDGSLIRFDDNAAVLLNNQNEPIGTRIFGPV
                     TRELRERFMKIISLAAEVL"
     gene            complement(20793..21047)
                     /gene="rpsQ"
                     /locus_tag="JBH85_04130"
     CDS             complement(20793..21047)
                     /gene="rpsQ"
                     /locus_tag="JBH85_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HAU0945381.1"
                     /translation="MSTNSESNARTMIGKVVSDKMDKTIVVMIERTVKHPKYGKIMKR
                     RTKLHAHDENQVCRVGNTVKIRESRPLSKTKSWVLVEVIS"
     gene            complement(21049..21243)
                     /gene="rpmC"
                     /locus_tag="JBH85_04135"
     CDS             complement(21049..21243)
                     /gene="rpmC"
                     /locus_tag="JBH85_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HAU0945382.1"
                     /translation="MKKIDELRNMSVEELQNELLSLRKDQFNLRMKKASGSLDKTHLI
                     TMVRKSVAKVKTILTEKAGK"
     gene            complement(21243..21656)
                     /gene="rplP"
                     /locus_tag="JBH85_04140"
     CDS             complement(21243..21656)
                     /gene="rplP"
                     /locus_tag="JBH85_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005495358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HAU0945383.1"
                     /translation="MLQPKRTKYRKQMKGRNRGLALRGSKISFGEFGLKAVERGRLTA
                     RQIEAARRAMTRHIKRGGKIWIRVFPDKPITQKPLEVRQGKGKGSVEYWVAQIQPGKV
                     LFEMEGVSKELAMEAFDLAKAKLPFKVMFEERTVM"
     gene            complement(21673..22329)
                     /gene="rpsC"
                     /locus_tag="JBH85_04145"
     CDS             complement(21673..22329)
                     /gene="rpsC"
                     /locus_tag="JBH85_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HAU0945384.1"
                     /translation="MGQKVNPIGIRLGIIKDWNSKWFAGKRYAEFLIQDIKLRNDLKK
                     KLMAAAVSKILIERPANNAVVTILTARPGVIIGKKGGGIETLRKEISDNLGVPVHLNI
                     EEVKKPELDATLVAEGIAQQLEQRVMFRRAMKRAVTSALKAGAKGIKICVSGRLGGAE
                     IARSEWYREGRVPLHTFRADIDYGTAESKTTYGIIGVKVWIFKGEILPQKKRSTESAQ
                     "
     gene            complement(22332..22667)
                     /locus_tag="JBH85_04150"
     CDS             complement(22332..22667)
                     /locus_tag="JBH85_04150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094378.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HAU0945385.1"
                     /translation="MEVTAKLKGAPLSAQKGRLVADMIRNMNVSGALDVLKFTPKKGA
                     KLMLKLLESAIANAENNNGADIDDLKVGMVCVDEATTLKRISPRAKGRANRICKRTCH
                     ITIKVSDEE"
     gene            complement(22677..22955)
                     /gene="rpsS"
                     /locus_tag="JBH85_04155"
     CDS             complement(22677..22955)
                     /gene="rpsS"
                     /locus_tag="JBH85_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_003856781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HAU0945386.1"
                     /translation="MARSIRKGPFIDHHLISKVEAAIESKSKKPIKTWSRRSTIVPEM
                     IDLTIAVHNGKDHVPVFITDNMVGHKLGEFAMTRTFKGHSGDRKAKGK"
     gene            complement(22974..23801)
                     /gene="rplB"
                     /locus_tag="JBH85_04160"
     CDS             complement(22974..23801)
                     /gene="rplB"
                     /locus_tag="JBH85_04160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HAU0945387.1"
                     /translation="MALLKSKPTSPGKRGEIRVVHHDIYKGKPHAALVEKLKKTGGRN
                     NQGRITVRHIGGGQRQKYRIIDFKRNKDGILGRVERLEYDPNRTALIALISYKDGEKR
                     YIIAPSNLEVGATIQSGADSPISVGNCLPLKNIPVGTTIHCVEMKPGKGAQMLRSAGC
                     SGQLVAKEGVYATLRLRSGEMRKIHVLCRAVIGEVSNSEHNLRALGKAGAKRWRGIRP
                     TVRGVAMNPVDHPHGGGEGRTSGGRHPVSPWGLPTKGYKTRSNKRTDTFIVRGRKKK"
     gene            complement(23813..24109)
                     /locus_tag="JBH85_04165"
     CDS             complement(23813..24109)
                     /locus_tag="JBH85_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HAU0945388.1"
                     /translation="MNAERLMMVLREPHTSEKATVMADKFKQFTFKVLKNATKTEIKL
                     AVEHIFNVKVKSVSVVNVKGKSKRFKQTSGKRSDWKKAFVSLHADQDIDFTVTE"
     gene            complement(24106..24711)
                     /gene="rplD"
                     /locus_tag="JBH85_04170"
     CDS             complement(24106..24711)
                     /gene="rplD"
                     /locus_tag="JBH85_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HAU0945389.1"
                     /translation="MEITTIDTKSKLKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNS
                     AQKTRSEVSGGGKKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYK
                     RALRSIISELCRTGNLVVVSDFQCDNHKTKDFLKKMNQMEISNALIIMSEVGENEYLG
                     SRNLIDYDICDVTTIDPVSLLRFEKVVVTEAAIKKIEEQLQ"
     gene            complement(24711..25358)
                     /gene="rplC"
                     /locus_tag="JBH85_04175"
     CDS             complement(24711..25358)
                     /gene="rplC"
                     /locus_tag="JBH85_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094373.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HAU0945390.1"
                     /translation="MIGLLGRKIGMTRVFTPEGVSVPVSVVEVQPNRVSQVKTAANDG
                     YSAVQLTGGTKKSSKVSKPVAGHFAKAQIDAGDMQVEFRIDSEDAFTPGQVISVADVF
                     TAGQYVDVSGLTKGKGFAGTVKRHNFRTQDASHGNSRSHRVPGSIGQNQTPGRVFKGK
                     KMAGHMGNARCTIQSLELVKVDSERNLLLIKGAIPGAPGSRVEIKPAVKKQARGE"
     gene            complement(25396..25713)
                     /gene="rpsJ"
                     /locus_tag="JBH85_04180"
     CDS             complement(25396..25713)
                     /gene="rpsJ"
                     /locus_tag="JBH85_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HAU0945391.1"
                     /translation="MSSNQNIKIRLKSFDHRLIDLSTREIVDTAKRTGAQIRGPIPLP
                     IRKEKFTVLTSPHVNKDARDQYELRTHKRLVVIVHPTEKTVDALMKLDLAAGVDVQIS
                     LDD"
BASE COUNT         7730 a         5609 c         4176 g         8202 t
ORIGIN      
        1 atttatttcg cattattact catcgttgtc accctgactt ctttgtgttt gtcagcttgt
       61 gggcaaaaag gacctttgta tttgcctgaa caagaaaaga aaacaacaac caatcaatag
      121 agacatccta tgggaataaa atttaccaaa atgcatggtt taggcaatga cttcattgta
      181 ttggatggag tcaaccaatc tattcaactc actgttgagc aaatacaaaa actagccaat
      241 cgccataccg gtatagggtt tgaccaatgt ttactaatag aatccagtca aaccgaagga
      301 attgatttta attatcgaat cttcaacgcc gatgggcaag aagtaggtca atgcggtaat
      361 ggggcgcgat gcatagctct ttttgccaga tattatggtt taacagcaaa aaataaattg
      421 acagtagcaa ctaaaactac gctcatggat ttaatcatca atgaggataa cagcgtgagt
      481 gtcaatatgg gcgttcccag actagcccca ggtgaaattc ctttacttgc tgatcgccaa
      541 tccccagaat attcacttga attaaataac ggcaatacag tgaatcttca tgcgataagt
      601 gtaggcaatc ctcatgctgt attgttggtt gaaaatatag atacagcccc tgtaaacagt
      661 ttgggacaac agattagttt ccacccgcaa ttcccagagc aagtcaacgt tggatttatg
      721 caaattatta atcatgaaaa aatcaactta cgtgtctacg aaaggggttg tggtgaaacg
      781 attgcttgtg gtagtggtgc ggttgctgcg gcagcaatag cacgtttatt ttacaacctg
      841 tcagacaaaa tcaccgttca tttgccagga ggagatttgt gcatccaatg gccttgtccc
      901 actgctccca ttatattaac tggacctgct gcttttgtgt atgagggtac attactttca
      961 taacaaaatt cacaaaatta aaacaagtat tgaatttttt tttcaaacag ttattctgaa
     1021 ttaatccaca aatataaaac aggacttagg aaaaacgcta aggtcaaggc aaaaaatatt
     1081 tttaatgagg gagtttagat aaactaaatg accgaattaa aaactggttt ttacgcaaag
     1141 attcggggtt gcttaagtcc tgtaaagatt ccatcgagag aatttgtgaa tattatattc
     1201 cgtggcttaa catgaacgaa atgggtatta aagttgatag agtagttttg acatttcggt
     1261 caaggaggat caagtggttg attttgataa acctgtctca aaaaatgata ttcttgccag
     1321 cttattactt atcgcagatt taaatagacc atctctaaat caaactcttt cctgggagca
     1381 agctctaaaa tcatttttat cgcttaatga tccgctgatt aaaacggaaa tatttataaa
     1441 atggctcagt caattaaatc ctgatcaact tcaatcgtcc ccagagatag tcctcctttt
     1501 gaaacacatt gtcgagcaaa agctgctccc ctacaccctc aaaaaaatat tgattcagcg
     1561 tgaaaacttc accacctcac aaatcaattg gctttgcaat cattgtctta tagttgcacc
     1621 tgatcaaacg actttacctg atattattaa actcggctca tggagctggc tggagaatca
     1681 tatgaaaaga aatgaactat taaattttga tttgttaaaa atagccatct taaataagga
     1741 ttatttagcc agcatcaaca atagtaaaga aagtcagctc gattttatct atgcgttaaa
     1801 cgctaataaa tttaactacc aacaaatact tgaattaatt gctttagcgc aggatagcca
     1861 gattaaatca ttattaatta cctgtctatt aagcaaaaag gagtacctgg acaatttaaa
     1921 agaaaaatca tttctagccc atttaaatca aagtgaattt cactcaccac ctcggcttaa
     1981 tccactaatc caccaattaa acctgagctg tttgactgtg gcacaaatag aacttctaca
     2041 acctgaagca tgtgttactt tactctgttc aatccctcat tttcatcagt tgtcagaaaa
     2101 acaggttgaa aaaatactac ttaaatatcc aaagcctgac atgattgcct attggctaaa
     2161 tcattactca tccaggccaa atgcgcattt tattttagcc catttgatga acctggtaga
     2221 tgttcatgtt gttgacgaac ttaataaaat ggattccaca aaaaaggaaa ccattattat
     2281 gaatatggta gaacatctcg aattatttga tccgactcat cctcttttga tcaaccaaaa
     2341 tgaagaaaaa cgactaatta ccgctattca acgctatctc tatggccaac atcatgacgc
     2401 gtatgtaact tacatcaagt tattggttta taaattatta aaccgtaatt accaattctc
     2461 acctcaagcg atgcaactcc tgatttgttt aaataatctg gaagagttta aagagttaaa
     2521 taataaaatc gcctatctga ccaattacta cttgcgagca tcagcacaat ccggtgattc
     2581 gagcttattt tataatgatt cacgcataaa catcacgagc atgacacaac tggtccagct
     2641 agccccaaaa attccaacta aatcaaaaga aaaaagtctt ttaagcagca tcttctgcgg
     2701 catcaaaatt agcgaaagct ctgtaatgac accgaccaat gatattcctg aacatccttt
     2761 aattaataaa ttaataaaaa acaagagaac agtgaaatcg atagattatt ttttaatgca
     2821 ttataaaggc gataagcaag tactttccaa aatcatcaat gattatttaa gttactatgt
     2881 tcaagaagga tgcactgaaa tacatcggcg ttcgatatat catttaattg ttctcatgtc
     2941 tttaagcgat atatcagctt ctgttagaga ggctatattc acagcgtttc taaactatcc
     3001 tgaattacat gatgagcaaa ttaatttttc tttatttgtc tatgatgcga aaagaactat
     3061 ccggcatttt ggggcacaag ctagcgaaga cagctatgcc agagttattg atttatgcga
     3121 gggagctcta aaaaaattaa atccaaataa acacaaggaa attatcagta tagcgactca
     3181 agctttaact gaagcaaaaa tcgagttaag ttttggtgaa aataccggat ttatcgctca
     3241 actgatttca cgattgaaac gatgttggta ttatggctgg actggttttt tttcccccaa
     3301 cccacctacc tttgttgcag caattgactc gccaataaag ccaagcgaaa aaaaaacctc
     3361 ccctcttctt caacaaagaa aatatttcac taccaaactt gaaacaaatc tgtcgattat
     3421 cctcgatgac ataaaatcag gttacaccca acaaaaactt aatgaattaa tcgaagcatt
     3481 gagtatattt tcattgcaat ccaatccaaa aaacgagctt aaaattcgtc aaaaactcca
     3541 tcgcttattt cactatctgt tactagaaag caaaaatgac ttaacattgg atgcctggct
     3601 tataaaaaat cagcaacttt taatcgcgaa tcgttttcgt ttgctagaaa tgcaactaat
     3661 gaaaggagct cgcaatgagg ttgaatcttt actcaaggaa ttcgatgaag actctgctca
     3721 tttcagccct atcagcaaag aatttactca ttctttaccc gaacaaaatc cgtataagtg
     3781 tgaatctgtt tcttcaaatc aaactccagg cgcaactatc ctggattcag caactgagtt
     3841 agctactagc ctaaaaagca cattaggcaa cttgggagta ttttttagca acaacatcat
     3901 gtcagctatt tatccaaata ataaatccac tccccaatcg acatcaacaa tgatttcacc
     3961 ttgattaatc ttccggctgc gcatctacag ccggattgat ttataataac ctgaaacaaa
     4021 caaccgttct aaaatttgga tccttcctat ttaattagca gatatcacgc tcatccggtt
     4081 gacctatcag gaataataga cctaaaatta aaaagcatac ttaacttatg gttaaacaat
     4141 ggacgaaagg cgaaaatatt ttcggctaaa aaaccatggc gaaataaatg ccagcttaga
     4201 caataattca attgaaattg ttgaaatctc ttccaatggt gctgtagtag ttaagcagaa
     4261 aactgatatt cctaaagagg gagtgcttaa actacaaatc cataacttca ttatggaact
     4321 ttgctatgaa gtgattcgag ctgaagacaa caacattgtc cttcatttca caaaagaaga
     4381 tgaaacgaat aagttatttc tggtactcaa acgattaaga gacgaacgaa aaaataaaac
     4441 ataaaaattt gacataactt gcccccataa aaagtcattt gtgattaagt aggagcctgg
     4501 agaaaacatt ctgtgacaaa gaataaataa gaaaccgaag acaatccatt catttaagaa
     4561 agtttccagc gtttgtgcat ccaattccac tgctcaggat gtgccagaat aatcttttcc
     4621 aaagcctgat tataggccaa ggtatttcgg tataaagatt cttgtgtagt gtcataatct
     4681 ttccagggaa tggggtcatg aaactccaaa acatgctttc cattaggtaa tctgtaactg
     4741 gctgcaggta taactggaat tcctgtatgg cgagatatcg tcgccaggct tctgtaggtg
     4801 ccagcttttt ttccaaaaaa ctctaccgct atcccatctc tgttcaccag ggatgcatgc
     4861 tgatccaata cgaagattac ggcatgattt tgttctaacg caacacaaac ctgctccaga
     4921 gaattttttt taggaataac atttaggcca gcttgatagt aatttttgaa cataatgcgt
     4981 tctatgaact taaatcgcaa ggtacgcctg atgaaatgaa attggccttt gaattccttg
     5041 aagtttaata cccctcccaa gggcgcaaac tcccaatttc caaagtgacc ggtaacgact
     5101 aacactcctt ttttctgtgc cacaacagct aacatttttt catggccgat tacttcaacc
     5161 tgagctcgta attttttttc actcatgaat cttaattgca gcgcttcttt taaagatttt
     5221 gcaagatgtg agtaatacgc ttttgccaag cgcttttttt gagattcatt cagttgatca
     5281 ttataaacct ggctaatatt ggaaaaaatc aaccggcgcc tgtatggcaa aaaccgataa
     5341 ataaaacgtc ccgccagtgt aatgggtaat gcttctattt gttgagctaa attattcaca
     5401 agctttgatc accaaacata cattcatgct ggcaaaccct cggttgatca tcatggcata
     5461 ggaattagat attatctctc tatgctcacg acttactgat aagccttcac acgtcggggc
     5521 aatttgttga aaattagcga tccccggcac gcatttggtt tcaagggcat atgtagttaa
     5581 taccgcatcc aatactccag aggcgcataa agtatgtccc atggaccatt taaaagcagt
     5641 cgcaggaact tcttcttgtt tgaatactga tttgatagcc agagcctcac tgtcgtctga
     5701 tttactgttt ccatttccat gggttactat tagtccaatt tcctcagagt ttattcctga
     5761 tgtgcttaat gtctgcccca tcaatgaagc caaatgttgc ccatctgctt caatagaaaa
     5821 taatcctgtt gcttcagaag cggataagcc accaactatc tcaccataac aagtcgcagc
     5881 cctggacttc acactggctt cactttccaa tacaagggct gcggcacctt cagcaagaat
     5941 ggtgccgtca tgctctttat caaaaggttt taaatgacga ttacttacca cacccaattt
     6001 ttcataataa aataagcctt gaggttctgt gcctatatca taggcaacca caaccgcacg
     6061 ttctgcctgc ccgctacgta tggcatgata cgcttccaaa atggcttgtg taccacctac
     6121 cgcatgattt gttacattgt gatttggacc tttaaagcca taggtaatac ctgtataggc
     6181 aagcacatta ttaggtaaaa tcctcaataa ccacatagga tgcacttcat caaacaactg
     6241 atttgcaaag ctacgcatat ctccatgggt tttagccaac aaaggtataa agtcatattg
     6301 ttgaaaatat ttattccctg gagaaccaac ataaatagcg gtttgttcat taaataaatc
     6361 agcatctgcc aggctatctc tgtaagcaat cattttacta tgctcaacag cttgcactgc
     6421 cgcattgatt cccattatat cttgacggga aataactttt attaattttc tatcaggaag
     6481 catcttggaa ggttggaaat cttttatttc tccgcccaaa cgatgcgacc attcagataa
     6541 ttcccaaaaa ttaatttcat ctattccaca ctggcctgaa atgattgcat tccaagtttc
     6601 atcagcagtt gcaccagagg cagttagagc gctgcgacca gtaataaata ctctattcgc
     6661 ttgactcatt tattttgtct cctcgaattc tggatgttta aataacaagc agctattaga
     6721 acctccaaaa ccaaacgaat tagataatac tacccctaaa gatttttcac gtggaccatc
     6781 aacaacataa tccaaatcac actccggatc aggtgttttt aaattcgctg ttttggggac
     6841 ttgcgcctgt tctatggatt taactgacaa taccgcttca agcgctcccg cagctgcgat
     6901 taaatgcccc gtttgacttt tggtagagct cactggtaaa ttggcgatcc tgtccccaaa
     6961 gacaactttg attgcattgg tttcacttaa atcattcatt ttagtggatg taccatgcgc
     7021 attaatataa tcgacatccc gtggttgaac acccgcatcc tccaacgcac gtttaatcgc
     7081 ttgaatagca ccatcaccgt tgggatgtga atcagttatt cggtaggagc tcaaagaatt
     7141 cccctcaccg gccagttcag catagatttt tgccccacgg gcttttgcct tactccattc
     7201 ttcaaggatc aaaaaggcag ccccttcacc caggacaaaa ccattgcgtg tcgcatcaaa
     7261 ggggcgactt gccgtttgcg gagtctcatt atacgttgat aaggcaccca aaagacaaaa
     7321 gctcgacaaa cccaaaggat taatcatgga atcaaatcca cctgccaaca taaaatctgc
     7381 ctcgccacga cggatcacct gcattgccaa tcccaaggct tggcctcctg aagcgcaggc
     7441 cgtatggaca gaagaggcat aaccagtaat cccatattgt tgtattaata aggaaagacc
     7501 agagtttgaa gtggttttac caaaatcaac caaattatag aaatccctgc tattagattg
     7561 cagctttccc caatcaattt caccgcctgc ggcacaagct tgttgaaacc gcgttaaata
     7621 ctcaaactcg gccgtcatca tcccactgcc tgttactatt ccccaccgat cagatgtttg
     7681 cttggtagga aatatagaag catcttcaaa tgcctggcgt gcagcttcca aagcaaaatg
     7741 agtaaaagac atgataaatc gagtatgctt tcccgaaata gacgtatcag gtgaaaagtt
     7801 ctttacttca gccgcaatag tggtaggaaa agcactggcg tcaaactgct tgatactatc
     7861 tatgccagaa tgaccagcga tcaaattcat ccaagtggtg gatacatcat ttcctagagg
     7921 cgaaacaacc cctagacctg taatagcaac tcgtcgtttc ataacctcat ttaccttttg
     7981 ggataagcac tatgtcgaca acacataccc gcttgccatc aacctcacac ctataagaca
     8041 gtattaattc atcatccatt tgctgtttca ctttgacctg gcaaactacg acatctccgg
     8101 gatgaacaaa ttcattcatt ttaattttac gtaattcgct gattcgataa gctctatcat
     8161 attttgctct agctataaac tctttcgcca aattcaattt acattcaaga agtaccgtca
     8221 tcggtagtac aggtctttta ggaaaatgat ccgggaaata agatgctgaa cgagttatcc
     8281 ttttttcagc aatcaagctt atacctggtt gactggcgag gattctgtca aattgcatgg
     8341 aagaatttat cattccacaa tcagagcagt tttcctctat taaaacaggc gaactcaaag
     8401 ctaacacaga agaccagtca cctggccggt atatttctgc aaactgctgt ctaatgacct
     8461 ctgtactaat aaattcagtc ataggcagca tggggcctaa tgctccatct atagtaaaaa
     8521 taatatcatt acctactttg gcaatgctat ggtattgaac tgccttttca tccagtgaat
     8581 caatatttga ttcaagcaat atcgtttcac cgacgtaagc aggtcgatac aatcgggcac
     8641 ttgatactac gccagcgact ggtcttgcag taaaatgatt atgttgcatc acattccacg
     8701 ctgccaattg ccccaatgtt tcaccaatca aagaaggcat aaagcaaagc cttccatgat
     8761 catcagtggt taaataagca tcatctcttg tgacatgctt tatcccttta atccattctc
     8821 ctggggataa ttgtacaatg cgatcaacaa ataagaacct catcaggcta cagtttccgt
     8881 tgcttgctgc tgggctatag ctgaaataac cagcttgcaa aaagtttcta cggtaaacaa
     8941 cacaggaatt tcgttaactt tcatattctc tttaaatcga tcagcaggga cttcgctcaa
     9001 ataattcttt aaagcctgta atcctgaggt tgttaaaata ccacctttct caaactcatc
     9061 ttcagccaga tcaccacgag cattcttttc caactggcct ctcgggattt taatcttgaa
     9121 ttctttttcc aattgaaaaa ccaaatcaag aaaatcgatg gactcagcac ccaaatcctc
     9181 aattaaacta ctgtttaaag aaatttcttc ttcatcaatt actaatacat cagcaataat
     9241 ttccctaacc ttagggtaaa cttcagctac attcatattt tatcctctga accaacaaag
     9301 ctcgcaaagc ttgaaattat atcataaaat ttacttttat catctactag ccaacctgac
     9361 tatagcctgc gtcaacatat aatgtatggg cattaatcat ggccgcttca ggcaaacaaa
     9421 gcaaatagat agcattagcc acatcttcag gtgttaacgc tctatctgcc aaagcatgag
     9481 cttgatattc atccagtaac tgttctctgt ttggaaaatg ctttaaagca tccgtatcaa
     9541 caacacctgc agaaacagta ttcacagtaa taccataact agccagctcc aaacttagcg
     9601 aacgaaccaa tgcttccaga gctgctttag aggcaccaat aaaagcataa tttggaatcg
     9661 cccttgatgc acctaagctg gatagtgcaa taactcgact gtttttaggc attagagcaa
     9721 gaccttccgt aaccaagtgg ttcaaagcca aagcattggt ttccaaacac cagcgccaat
     9781 gcttggtcga cattttcaaa gcaggtttca atactccact cgctgcattg ctcactagaa
     9841 aatttaagtg cttaaagtgt tctctaaatt gagagaacat ttctttgaca gattgacaat
     9901 ctgctacatc ggcttgtaag gcaactgctt ttctacccat gccggttatt tcattgacca
     9961 gactttgagc ctcatcagag ctattataat acacgatagc aatatcgcag cctgactgtg
    10021 ctaactttaa tgcggtcgct ttaccaattc ctcgtgcacc acccgttatc aatcctacct
    10081 ttcctgaaaa aactaatgaa ctcatacgat aaccctatag tataaaatcc caccaaacta
    10141 ccgctaatct gctgtgctgt caatggaaat atcgggactc tatcaagcgg aatttcataa
    10201 tttatcttgt ttccaaagca cttaatttgt accatctcca catgatataa tttagaccta
    10261 taatgaatga agtattcttg gaacaaaact gtttttccta tagcagcaat attctctttt
    10321 cgtctcctgg gattattttt acttatccct gtattcactc tttatgccac taaccttaaa
    10381 ggtgctactc caacattaat tggcttggct ttgggaagct atggattggc acaaggatta
    10441 ctacaaatcc cttttggtat gctttcagat aaactaggca gaaaacctat gatcgccata
    10501 ggtctattgc tattcgctgg aggaagcttg ttaggagcag taactcattc tattgctgga
    10561 atgataactg ccagaatact acagggtgct ggagctatag gtagcgtgtt aattgctttg
    10621 cttgctgatt taaccctgga tgaacaacgt acaaaggcaa tggccatagt agggataact
    10681 attggaacat catttagcct cgcaatgata attagccctg ctcttaccca ctactatgga
    10741 ttatcaggag tgttctatct cactgcagct ttagctgttc tagggattat gatactttat
    10801 ctcatcattc ccaatccctc aaaggagcag tttcatgcag atagtgaacc cagcttatct
    10861 ctcataaaac cagtggtaac agatcaacat ttacaacgcc tcaattttgg aattttttgt
    10921 cagcatttta ttcttacagc cacttttttt gctataccca tgctattgaa atatcaaatt
    10981 gagaatggtc atttacatca gcaatggcac ttctatttgc cactcatgtt attctcattt
    11041 attttaatgg taccctttat cattatttca gaaagaaaaa aacgattaaa aacagtattt
    11101 gttatatctg tactgctgac tacctttact caaggtctgc tggtactcgc atcacaaaat
    11161 tggtattggt tttgtatttt aatgtttgtg tatttcgttt ccttcaatgt tcttgaagca
    11221 acattacctt cattagtgtc aaagctggca agtccaggga gcaaaggcac agcaatgggt
    11281 atttattcaa cgagtcaatt tttaggaatt ttttttggtg ggtctttagc tggtattctt
    11341 tatcagtggt acgataacca agctattttt ctaattaaca tgattctgag ctgtctatgg
    11401 ttcatcattt cgctaagcat gaaatctaat gtttattttt ctactcttat tttgcctttt
    11461 acagcaaata atgaagaatc aaaattggta gtcaatcagc ttttaaaggt agccggcatt
    11521 aaagaagtta ttttgtccaa agatgaaaat accttgtatg ttcgagtaga taatgaggaa
    11581 tactccacag gaagcgctga aaaaattctt catcagtcta caatttacca ataacacctt
    11641 ctctttgggc tgctacgaaa taaccgccaa attatgtata atacctaact aactttcgca
    11701 tacaggagat gatttcaatg gcaagaggaa taaataaagt aatacttgtt ggtaatgtag
    11761 gggcagatcc tgatgtaagg tatttgccta acggaaatgc tgttactaca ctttcagttg
    11821 ctaccagtga aacatggaaa gacaaaacga caggtgaaaa acaagataga actgaatggc
    11881 acagagtagt ctgttttaat cgtctgggtg aaatagccgg agaatacatt cgcaaaggtt
    11941 ccaagctata tgtcgaaggg agcttaagaa caagaaaatg gcaagatcaa cagggccaag
    12001 atagatatac aactgaaatt gttgcgtctg acattcaaat gctcgatagc aaaggaagta
    12061 gtgccactaa ttacgacgac atgccttcat ttcagggaac ctctacccct caacaagctt
    12121 caacaaaaaa tcaagcaact ccaacatcta ctgcacaaga tgcttttgat gaattagatg
    12181 atgacatacc gttttaaatg attcaaataa aagcccgcgt taatgcgggc tcaaaatata
    12241 cattaatagt tattaatcta aaatttactc ttccgtatca tcactgctta caggtctatc
    12301 cattaattca actatagcca taggtgcatt atcaccatcc ctatacccgc atttaataat
    12361 acgtatgtac ccacctggtc gttttgcgaa acgtggtcct aaatcagtaa ataatttacc
    12421 tacagctgat ttagatcgca aaatatcaaa agcacgtcta cgtgatgcta ctgaatcaga
    12481 tttactaaca gtaatcaaag gttcgatata tcgacgtaaa tcttttgcct ttggcaaagt
    12541 ggttctaatt aactcgtgct caatcaaaga acaacacata ttagaaaaca tagccttacg
    12601 gtggctacta gtacggctaa aactacgtcc ggaattacgg tgacgcataa caaagactcc
    12661 taaatattac tcgccaaggc ttgctggcgg ccaattctca agtttcatac ccagcgataa
    12721 tgatcgagac gctaaaacgt ctttaatttc agttagtgat ttcttaccaa gattaggtgt
    12781 cttcaataat tcactttctg ttctttgaac caaatcgcct atataatgaa tgttttcagc
    12841 ttttaaacaa ttagctgatc gaacagtcaa ctccaaatca tccactgaac gtaataatac
    12901 aggatcaaaa tcattacgct ctttattgtc agcacgtgat tcttcaaatt tcatgtcaac
    12961 aaacgcatga agctgtcttt gtagtatact agcagatatt cttattgcct cttcagcatc
    13021 gatagtaccg ttagtttcta attcaatagt aagcttatct aaatctgttc tgttttctac
    13081 acgtgcactg tcgacgaaat aagctacttt cttcactgga gaaaaactgt tgtcaatttt
    13141 taactttcca accgtctttt tctcaatttc atcatcatga tagcgaacaa atgcatcagt
    13201 attatgaaag ccaatacctc tttcaacttt aagagtcata tttaatttac ccttttcatt
    13261 gagattggct atgacaagtt ctggattaat aatttcttga ccatgagtca actgaatatc
    13321 accagctgta acttgacatg gtccttcttt atttaaggta atctgcgctt cgtttcctac
    13381 agtcaatttg atagcaactg attttaggtt aagcaacaaa tcaaccacat cttcctgaac
    13441 accttcaata gtactatatt catgcaaaac accatcgata gaagcttcag taatggcact
    13501 tcctggcatg gatgacaata agattcttct caaagcattg ccgagggtgt gaccaaaacc
    13561 tcgctccaaa ggttctaaaa ctattctagc tttatagggc gactcggcct gtactttgag
    13621 aaccttaggc gtcaacattt cattgatttc agtatacatt cagctatctc tccgagctta
    13681 cttagagtaa agttctacaa caaggtttac gttgtagtct gaagataaat ccattaacgt
    13741 cggtgctgta gaaaatgtac ctttaaaaga accagtatct acagtaatcc aatcacaggg
    13801 tgctctttgt tcagataaag ctaaagcagc ttggatacgt ccttggtttt tagccttttg
    13861 tcgaactgat acagtatccc caggattaac cagaaaagaa ggtacgttaa ctactttatc
    13921 atttacaagt attgccttat gtgcaactag ttgtctagct tcagcacgtg tactggcaaa
    13981 acccatacgg taaacaacat tatctaaacg tctttccaat agggccatta aattttcacc
    14041 tgtagagccc ttttgtctag ccgctttttt gtaataatta cggaattgct tttcaagaat
    14101 cccataaagc cttctaatct tttgtttctc tctaagctga attccataac tatttaaacg
    14161 aggtttttta tcaccatgct gtccaggtaa cttttcagat ttacacttgg atttatgatc
    14221 acgaacccca cttttaagta ataaatcaca accttcgcgt cgtgataatt tacatttagg
    14281 accaagatat ctagccatta attactcctg agtcttatac acgacgtttt ttaggtggct
    14341 tacaaccatt atgtggtatg ccagttacat cggtaatttc aacaatttta aaatcctggg
    14401 ttattaattc acgaatagta gattcacgac caggaccagg accatgcaca aaaactgcaa
    14461 cagatttcat accatattct ttagcaacag cagcagctcg ctcagttgca acttgcgcag
    14521 cataaggagt actctttcta gaacctctga agccagatcc accagatgtt gcccagcata
    14581 atgcattacc ttgtctatct gtaaaggtaa ctatagtatt gttgaaagat gcatgaatgt
    14641 gtactatgcc atcagacact acgcgtttta ccttttttcg tgttttttgc tgctttgact
    14701 ttgttattgc catcttttat tttcctacat gaaaaatcaa ctactagtgc cttttctacg
    14761 gccttttctg gtacgagcat tagttttcgt acgctgtccg cgcaacggca atcctctcct
    14821 gtgtcttaat cctctataac aaccaagatc cattagtctt tttatgttca ttgttacaac
    14881 acgtcgaaga tcaccctcta cagtaatttt cgcaatttca gttctcaaag attccaactg
    14941 agcatctgat aattgagaaa ctttaactga aggatctata tcaactgttt tacataattt
    15001 caatgatgtt gttttaccaa taccataaat tgctgttaaa gcgattacca catgtttatg
    15061 atcaggtata ttaactcctg caatacgagc cattagtttc tccgaacgtt atttgttctg
    15121 tcgaaaggga cagaaggata ctattttaat aaaataaaat caagcagata ttacccttgc
    15181 ttttgtttat gacgggcatc cttacaaatt actcgtatag tgccacttct ttttattatt
    15241 ttacaattgc gacatattcg ctttactgat gctcttactt tcattcctaa ctccgataaa
    15301 tcatagcaga ccaggtaact tagtacctct aaaattcgcc ttttttaata aagaatcata
    15361 ttgctgagtc attaaatgag cttgtacctg tgctacaaaa tccataataa caacaactat
    15421 aatcagcaac gaagtaccac caaaataaaa tggaacatgc caggtataca ttaaaatttg
    15481 tggtaacaaa catactaaaa ccaagtaaat ggctccaact aaagtcaaac gagtcatcac
    15541 tgaatcgata tatttagttg tttgctctcc tggacgaatt ccaggaatat atgctcctga
    15601 ttttttcagg ttatctgctg tatccttagg gttaaacact aaggcagcat aaaagaatgc
    15661 aaagaacaaa atagctgctg catacactat caaatataag ggttgacctg gtgatagtgc
    15721 cattccaaca tcagataacc atcccagccc tttagtttgt gaaaaaaatt gagctaaagt
    15781 tgctggtaat aaaataatgc tagatgcaaa tattggtgga atcacacctg acatatttat
    15841 ttttaatggt aaatgactcg tttgggctgc atataccttt ctaccttgcg ttctctgtgc
    15901 ataattaaca cgaattcgtc gttgagcacg ctccataaat acaacaaaac cagttactac
    15961 aattactact gctgcaatta taactagtgt aagagcttgc atctgacctt ccttaacttg
    16021 ctggaggaca gatcctatag catttggcat gctagagaca attccagaaa agataattaa
    16081 ggaaattcca ttaccaacac ctttttctgt aatttgctca cccaaccaca ttaaaaacat
    16141 agtgcctgta actaaagtta caacagcagt aaaatagaat gagaaatctg gttgcatagc
    16201 aatttgctga ctagccaacc atctcgccat acccatagac tgaaatattg acaagagcaa
    16261 tgttaaatat ctggtatatt gatttatttt tctacgacct gattcaccct ctttctttag
    16321 ttgctccagc ttgggagaaa ctacagaaaa cagttgaata ataattgatg cagaaatata
    16381 aggcataata ccaatcgcaa acactgttac acgagacagg gctccaccag aaaacatatt
    16441 aaacaagcca aatatagtgt tttgctgttc actaaaaaaa ttagctaatt ttgcaggatc
    16501 taatcctgga acaggtatat gagcacctaa tcggtaaact aatatgccta gaacaacaaa
    16561 catcagtctt gactttagtt cggctaatcc accacgaggc ttactaccgt tatgcttttg
    16621 gtttttcata gtcactcttc tatactaccg cctaaactct caatagcaga acgagctcct
    16681 ttagtgactc ttaaaccctt aagcttaatt gctgcagtca gctcgccaga taaaattact
    16741 ttaacatctt tgattgagtt attaattaaa cctgctttac gtaaagcaac taaatcaatt
    16801 acttcatcat tcaattttgc aagctcaccc aaactcacct catcaatggt tcgacctact
    16861 ctagacttga aacccatttt gggtaatcgt ctttgtatag gcatttgacc accttcaaaa
    16921 ttaattttgt ggtaaccacc tgctcttgat ttttgacctt tatgaccttt gccacaagtt
    16981 ttgcctaatc cagaaccaat acctctcccc actcgtcttc ttgagggtct ggaacctgga
    17041 tctggcgata atgtatttaa attcattatg cactctcctc aaccaacaac aggtaattaa
    17101 tttcatttac aagtccacga attgcaggag tatcactatg aaccacactt gaatttgttt
    17161 tacctaaacc cagctgtttg gctatagcaa catgctttgg ttttctacct atcgtgcttt
    17221 taaccaaggt tattttaatt ttttttccca taattagcct gccattactt cttcaactgt
    17281 ttttccacgt ttggctgcta catagtccgg cgtaccaatg tgtgtcaatg caccaatagt
    17341 ggcacgaaca atgttacttg gattggtaga accaatgctt tttgcaagaa tattttgcac
    17401 acccaatact tccaaaacgg cacgcatagc acctccagca ataattccag taccttcact
    17461 tgctggcttc ataaacacct tggaagctcc atagttccat gtgatttcgt ggaatattgt
    17521 agtacctgaa agaggaatgt aaaccatatt tttcttggct tggtccatag ctttttgaat
    17581 tgctattgga acctctcttg ccttacctcg tccaaaacct actttaccct ttccgtcacc
    17641 tacaactact aaaacagcaa aaccaaaaac tcgtccaccc tttacaactt tagccgtacg
    17701 agttaccgat accaattttt cttggtatcc atctgacttg ggtaattcat cgaatgacat
    17761 aatcgttcct taaaaatcta atccggcttc gcgtgcacct tcagcaagtg ctttaactct
    17821 gccatgatat ttataacctg ctctgtcaaa tgcaacctgt gtaatgcctg cagccttagc
    17881 acgcttaccc aatagttgac caactaaact ggcttgttca actttacttt ttccagtcaa
    17941 actggatctc aattctttat ctatagtaga tgaagctacc aacaccttat caccaagctg
    18001 atctgacttg acaatttgag aataaatatg cacaccactt cgatacacaa ctaatcttga
    18061 gcggcctgtt ttgcgtatta aggctttggc ttttaatcca cgtctatgtc gtgcgttttg
    18121 cttattcata gttaacacct tatttcttct tagcttcttt acgaacaatc tgctctccag
    18181 catatttcac acctttccct ttataaggct ctggtggtcg aaatgctcta atttcagaag
    18241 ctatttgtcc aagaacttgc ttatcaacgc ccttcagcaa aatggttgtg ttattaggag
    18301 tctctacggt tacacctttt ggtaaatcat actctataga atgtgagtat cctaatgaca
    18361 aactaattga cttgtcttta gattgcgctc tatatcctac accaaccaat tctagtgtaa
    18421 ctgtatatcc ctcagtaact ccttgaacca tgtttctaac taaggctcta gctgtaccag
    18481 cttgtgccca tcccattgga tcattagaag caggtgaaaa ttctaatttg tttgattcct
    18541 tactatgttg aatattaacc aatttattaa ttttttgagt taatattcct ttggggcctt
    18601 ttacagttat tactccatca acaaatgtta cttcgacatt tgctgaatga attactgggg
    18661 cctttgctac tctagacata tcattcctcg caagtattaa gccacttcac aaatgacttc
    18721 gccaccaaca ccttttactt ttgctgatac atgggtcatt atacctttag acgtagaaag
    18781 aatagccaca ccaaatccag ggattgaatg caaatcctta tatgatttat atactctcaa
    18841 acctggacga ctaatgcgct taataaattc aattaccggt cttccatgat agtactttag
    18901 ctttaaagta attgacttca gaccatttgg taatgtttca ataaaaaagt cttgtatata
    18961 tccttcttcc tttaaaactc gagctatttc ttcttttaat ttagaagaaa ccaatgttac
    19021 ttgctgatgt ttagcttgtt gaccatttct aattctagtc agcatatcag caattggatc
    19081 atgcatactc acaattattc tccaataaaa tagtttacca gcttgatttt ctaccgccag
    19141 ggatattgcc caccataagc tgttgtctta aacaaattct gcaaagatta aacttgcgat
    19201 aaactgcgtg tggtcttcca cattgcttgc atcgagtaac atagcgaaca ggatttgaat
    19261 taactggtaa ttttgctagt tttgcctgac tttccattat tacctggaaa tcatcagatg
    19321 atttaatcaa ttgttttaac tcgtttcggc gttgtctgta cttttctacc agcttcgcac
    19381 gctttgactc tcgcatcagc attgattttt tagccacaat ttcacccttt tattttctat
    19441 ctttgtcttt cagtggaaga ttaaatgctt ctaacaaagc tttagcttct tcatttgttt
    19501 tagcacttgt tgtaatacaa atatctaaac cgcgtattcc gtctgtttta tcataatcaa
    19561 tctctggaaa cacgatttgc tcatgtattc ccatgctgta gtttcctgtt ccatcaaaag
    19621 attttggatt caaaccacga aaatctctta cacgaggtaa agtaatagat attaatctat
    19681 ctagaaactc atacatacgt tcacgtctga gcgttacctt acaaccaatt ggccatccct
    19741 ctcttatttt aaaaccagct attgattttc tagcttttgt aacgacgggt ttctgaccag
    19801 aaatcagcgt catgtcttca atcgcatgat tcatgacttt tttgtcacca acagcttctc
    19861 caactcccat attcagagtt attttgagaa tcctgggtac ttccatcaca cttgaatagt
    19921 tgaaccgttt catcatcata gtgacgacgt ctttcttata aaattcttta agtctcgcca
    19981 tttcaatcac ctaactctat atacggtcaa ttatttcatt gttagactta taatatctaa
    20041 cctttttgct aacaccatta ctctcaagat atttaaagcc gaccttatca gccttttttg
    20101 taacaggatt atagtgagca acatttgaaa cgtgtaatgg agcttcacgc gctataatac
    20161 cacccttatt ttcaggcttt tgtggattag gcttgatatg ctttttaatt agatttccgc
    20221 cttctactac aacggcatca tcaattaccc ttaaaacctt acctatatga cctttacttt
    20281 taccggcaat tacaattact tcatcgcctg atttaatacg tttcatatct aatccttctt
    20341 acaatacctc tgcggcaaga gaaattatct tcataaatct ttctcttaac tcgcgtgtaa
    20401 ccgggccaaa tatacgtgtt cctattggct cgttttggtt gtttaaaaga actgctgcat
    20461 tatcatcaaa tcgaatcaat gaaccatcat ctcttcgaac accttgagca gttctaacga
    20521 ctaccgctct cattacagca ccctttttta ccttacttct tggtatagca tcttttacgc
    20581 ttactttaat tacatcacct acacgggcat accgtctgtg tgatccacca agtactttaa
    20641 tacacattac tttacgtgct ccgctgttat cagctacttc aagcactgtc tgcatttgga
    20701 tcatttttct ctccagatct aatttcgacc agaaaaaggc tgctgattat atcaggcctt
    20761 ttagggtttt aaaagtaaaa caattaagtt acttatgaaa ttacttcgac taatacccag
    20821 cttttcgttt tagagagtgg tcgtgactca cggattttta cggtattacc aactcggcaa
    20881 acttgatttt catcatgtgc gtgtagttta gttcttcgct tcatgatttt cccatacttt
    20941 ggatgtttca cagtacgttc aatcataact acaatagttt tatccatttt gtcgctaact
    21001 acttttccaa tcattgttct ggcatttgat tcactattag tagacatttc acttacctgc
    21061 cttttcagtc aagattgttt taacttttgc cactgactta cgcaccatag tgatcagatg
    21121 tgttttatct agtgagccac ttgctttttt cattcgtaaa ttaaattgat ctttacgtaa
    21181 tgaaagcaat tcattttgca attcctcaac tgacatattg cgcaattcat ctattttttt
    21241 cattacatta ccgtccgctc ttcaaacatc actttgaaag gaagttttgc ttttgcaagg
    21301 tcaaatgctt ccattgcaag ctctttgcta acgccttcca tttcaaataa aaccttacct
    21361 ggttgtatct gggctaccca atactcaaca cttcccttac ccttaccttg tcttacttca
    21421 agtggttttt gtgtgattgg tttatctgga aatactctaa tccaaatttt accaccacgc
    21481 ttaatatgtc gtgtcatagc ccttcgcgct gcttcgattt gtctagcagt taaacgtcca
    21541 cgctctacag cctttagacc aaactcaccg aaactaattt tactaccacg aagagccaaa
    21601 cctctattgc gacccttcat ttgttttcgg tacttagtac gctttggttg taacataatt
    21661 tctaatcctc actcactggg cgctttcagt tgatcttttc ttttgcggga gaatttcacc
    21721 cttaaagatc cagactttta cgccaataat tccgtaggta gtcttggatt cagcggtacc
    21781 ataatcaata tcagctctaa aagtatgtaa aggcactcgt ccctctctgt accattcact
    21841 tcttgcaatt tcagcaccac ccaatcggcc acttacacaa attttaatac cctttgctcc
    21901 agctttcaga gcagaggtaa cagcacgttt catagctcgt ctgaacatga cacgttgctc
    21961 taactgctga gcaatacctt cagccaccaa agtagcatcc aactcaggct ttttcacttc
    22021 ttcaatattc aaatgaactg gcacacccaa gttatcggaa atctctttac gaagtgtttc
    22081 aattcctccg ccctttttgc cgataataac acctggtctt gctgttagga tagttacaac
    22141 agcgttatta gctggtcgct caataagtat cttgctaaca gctgcagcca tcaatttctt
    22201 tttaagatcg ttacgtagtt ttatatcctg aattaaaaac tcagcatatc gctttcctgc
    22261 aaaccatttt gagttccaat ctttaattat tccaaggcgt atacctattg ggtttacttt
    22321 ttgtcccatt gctattcctc gtcagacact ttaatagtta tatggcaggt acgtttgcaa
    22381 attcgatttg ctctaccctt agctctggga ctaatacgtt ttaaagttgt tgcttcatca
    22441 acgcatacca tgcctacttt cagatcatca atatcagctc cattattatt ttcagcattt
    22501 gctatagctg actctaataa tttgagcatt aatttagcac ccttttttgg tgtaaacttg
    22561 aggacatcaa gcgcaccaga cacattcata ttacgtatca tatcggctac taatctaccc
    22621 ttttgtgcgg ataaaggagc gccttttaat ttagctgtta cttccatcat atcctcttac
    22681 ttacctttag cctttctgtc cccagagtgg cccttgaatg tacgagtcat ggcaaactca
    22741 cctaatttat gaccaaccat attgtctgta ataaatacag gaacgtggtc tttgccgtta
    22801 tgcacagcaa ttgttaaatc aatcatttca ggaacgattg tagaacgtct agaccaagtt
    22861 ttaattggct tttttgattt tgattcgatt gcagcttcta ccttgctgat caaatgatgg
    22921 tcaataaatg gaccttttct aattgaacga gccacttgat atcctcatat taattatttc
    22981 ttcttacgtc ctctgacaat aaatgtgtca gtacgcttat tgcttctagt tttataacct
    23041 tttgttggca atccccatgg agatacagga tgacgtccac ctgatgttcg tccttcacca
    23101 ccaccatgtg gatgatcaac tgggttcatg gcgaccccac gaacagtggg acgtatccct
    23161 ctccatcgtt tggcaccagc tttacccaat gctcttaggt tgtgttcgct attacttact
    23221 tcaccaatta cagctcggca taaaacatgt atcttgcgca tctctcctga acgtaatctt
    23281 aaagttgcat aaacaccttc ttttgcaaca agttggccac tgcaaccagc acttctgagc
    23341 atttgcgcac ctttaccagg cttcatttca acacaatgta ttgttgtacc tacaggtata
    23401 ttttttagtg gcagacagtt tcctacacta attggtgaat cagctccact ttgaatagta
    23461 gctccaactt ccagatttga tggtgctata atatagcgct tttcaccatc tttgtaggat
    23521 atcagtgcaa ttagggcagt tctatttgga tcatattcta atctctcaac acgacctaat
    23581 ataccatcct tattgcgttt aaagtctata attcgatatt tttgacgttg tccaccacca
    23641 atatgtctaa cagttatacg accttggttg tttcttccac ctgttttttt tagtttttca
    23701 actaatgcag catgtggctt acctttatag atatcgtgat gtacaacacg tatttcacct
    23761 cgttttccgg gtgaagtcgg tttagatttt aatagtgcca tctttatctg ccttattcag
    23821 taactgtaaa gtcaatatct tggtctgcat gaagagagac aaatgccttc ttccagtcac
    23881 ttcgcttccc actggtttgt ttgaagcgtt tagatttacc cttcacattg acaacagata
    23941 cacttttaac ttttacatta aatatatgtt caactgctaa tttaatttca gtcttagtcg
    24001 catttttcag tactttgaaa gtgaactgtt taaacttatc ggccatgaca gttgcctttt
    24061 cagaagtatg tggttctcta agaaccatca tcaatctctc agcgttcatt gtaactgttc
    24121 ctcaattttt ttaattgcag cttctgtaac aacaactttt tcaaatcgta gtaaggaaac
    24181 aggatctata gttgtaacat cacagatatc ataatcaatc aggtttcttg aaccaaggta
    24241 ttcattttca ccaacttcac tcattataat cagagcatta cttatttcca tctgattcat
    24301 ttttttgagg aaatccttgg ttttgtgatt atcacactgg aaatcactaa caaccaccaa
    24361 gttcccagtg cggcaaagtt cggagattat actacgtaat gcacgtttgt acattttttt
    24421 attaagcttt tgtgaataat ctcttttttt agatgcaaat gttactccac cacttctcca
    24481 taatgggctg cgaatggttc ctgctcgcgc acgacctgtt cctttttggt tccagggctt
    24541 tttaccacca ccactaactt cagaacgagt tttctgagcg ctattaccgc ttcgagcatt
    24601 gttcatgaaa gtaactactg cttgatgaac caagccttcg ttgtatgtat aagcaaatat
    24661 ctctttattt agctttaatt ttgactttgt atctattgta gtaatttcca tcactcacct
    24721 cgtgcttgct ttttgactgc aggcttaatt tctactctag aacctggagc accaggaatt
    24781 gcacctttaa tgagcaataa atttctttca gagtcaactt ttaccaattc cagactttga
    24841 attgtacatc gagcattacc catgtgaccg gccatttttt tccctttaaa aacacgacca
    24901 ggggtttggt tttgtcctat agaaccaggt actctatgtg atcttgagtt accatgcgat
    24961 gcatcttgag ttctaaagtt atgtcgtttt acagttcctg cgaaaccttt acctttagtt
    25021 agacccgata catcaacata ttgtccggca gtgaatacat cagcaacaga tatgacttga
    25081 cccggggtaa atgcatcttc tgaatctata cgaaattcta cttgcatatc accagcatcg
    25141 atttgtgctt tagcaaaatg cccagccact ggcttactca ctttgctaga tttctttgta
    25201 ccaccagtta attgtacagc tgaataacca tcattcgctg ctgtttttac ctgagaaacg
    25261 cgattcggct gaacctcaac aacagaaaca ggaacagaaa ctccttctgg tgtgaagaca
    25321 cgcgtcatac cgatcttacg gcctaataaa ccgatcatca ttgtaacacc tctttaatat
    25381 cctttgcctt tatatttagt catcaaggct tatctgaaca tcaaccccgg cagccaaatc
    25441 caatttcatt aaagcatcta cagttttttc agttggatga acaataacga ccaggcgttt
    25501 atgagtacgt aattcatatt gatctcttgc atctttattt acatgcggtg aggtcaatac
    25561 agtaaatttt tcttttctga taggcaaagg aattggtcca cgtatttgtg cgccagttct
    25621 tttcgcagta tcaacgattt ctcgtgttga tagatcaatc aaccgatgat caaaggattt
    25681 taatcttatt ttaatatttt gattgctact cattttt
//
LOCUS       DACVWI010000027        24922 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.027, whole genome shotgun sequence.
ACCESSION   DACVWI010000027 DACVWI010000000
VERSION     DACVWI010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 24922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24922
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.027"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            272..622
                     /locus_tag="JBH85_04185"
     CDS             272..622
                     /locus_tag="JBH85_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HAU0945392.1"
                     /translation="MVPADAKLLKQAKSLRKRSTDAENCLWYYLRAHRLKGYKFKRQV
                     PIGNYIVDFVCIQRKLIVELDGGQHLLNKEYDKDRSAYFSTLSYKVLRFWNDDVLLRT
                     GDVLESIVRCLEES"
     gene            678..1460
                     /gene="xth"
                     /locus_tag="JBH85_04190"
     CDS             678..1460
                     /gene="xth"
                     /locus_tag="JBH85_04190"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HAU0945393.1"
                     /translation="MKVISFNANGIRSSARNGFYDWLVGQDVDFVCIQETKSQVEQLI
                     PEELYFPRDYFCDYFDAEKKGYSGVAIYSKYKPVRIVKGLGFDYCDKEGRYIQFDYPK
                     LSVISLYLPSGTSGEDRQEVKYAFLEQFARHLMNLKNEGRELIICGDYNIAHKKIDLK
                     NWRGNQKNSGFLPEERAWMDELFGSMGFVDAFRVHNQEEEQYTWWSYRARAWEKNVGW
                     RIDYQVITPGLTEYVADSRIFREARFSDHAPLMIEYKGDWCV"
     gene            1432..2223
                     /gene="xth"
                     /locus_tag="JBH85_04195"
     CDS             1432..2223
                     /gene="xth"
                     /locus_tag="JBH85_04195"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HAU0945394.1"
                     /translation="MNTRETGVFKLASWNVNSLKVRLEQVLQWLESSQVDVLAMQETK
                     LTDDNFPVASFTDKGYHVIFSGQKTYNGVAIISRYPMTDIQTDIPELEDPQRRILAAT
                     VKGIRLINLYVPNGGELTSDKYQYKLDWLKKVTRFIQHQLSIYSKVAVVGDFNIAPED
                     RDVHDPVEWEGCVLVSPAERQAFMEILELGLHDSFRNFAQEEKAFSWWDYRAAAFRRN
                     RGLRIDHVLLSHELNALCRQSKIDKEPRKAERPSDHAPVWVELEL"
     gene            2360..2587
                     /gene="rpmE"
                     /locus_tag="JBH85_04200"
     CDS             2360..2587
                     /gene="rpmE"
                     /locus_tag="JBH85_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HAU0945395.1"
                     /translation="MKASVHPDYQTVKVTCSCGEVFETRSTLCKDLNIEVCSMCHPFY
                     TGKQKLVDTGGRVQKFRDRYNMRTGQAKSKE"
     gene            2714..3949
                     /locus_tag="JBH85_04205"
     CDS             2714..3949
                     /locus_tag="JBH85_04205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HAU0945396.1"
                     /translation="MDNEVIKQRALDYHEFPVPGKLSVHLTKSTNSQDDLSLAYTPGV
                     AAPVLAIAEAPENAYRFTSKGNLVAVMTNGTAVLGLGNLGPLASKPVMEGKAVLFKRF
                     ADLDVFDIEIDAEDPQSFIATAKRIAPTFGGINLEDIKAPECFEIEQALIQQLNIPVF
                     HDDQHGTAIVVAAGLLNALELQNKKLSDIKIVCMGAGAAGIASMRLLVALGAPKSNML
                     LLDTKGVIHDGREDLNPYKFAFARNTLCRTLEDALVDADVFIGVARPDLLNAHLLSLM
                     APNPVIFALSNPDPEIKPELAHSVRKDLVMATGRSDYPNQVNNVLCFPYIFRGALDVR
                     ATCINQAMQIAAVEAIRQLVHEPVPQVVKDNYPGVVNWDFGPDYIIPKPIDPRLKERV
                     PAAVAKAAIASGASQFNNL"
     gene            4160..5452
                     /locus_tag="JBH85_04210"
     CDS             4160..5452
                     /locus_tag="JBH85_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945397.1"
                     /translation="MHTENRTNYALIGWLLCGLGAIFYSYEYLLRIAPSVMEDALRSH
                     FNLSASGFGFLSSFYYFAYVPMQLPVGVLLDRYGPKRLLTLACLVCVIGTYMFTGTTI
                     FWVAATGRFLVGFGSAFAFVGVLKIATLWLPENRLAMISGMTSALGPIGAMLGDNFLE
                     LFIVKMGWVKTLNMTAAFGIVLTLVLWVGIRDRKGQHRQSGTVPTLKKGLVDLGIIIT
                     SRQIWVNGMYGCLVYLPTTVFAELWGIPYLHHAHGLTTQAAGLANSVLFLGFIIGAPI
                     MGYISDRLYRRKFPMLIGASGAAIVMMMILYLPGLNESNIQALMFLLGLLYSAQAIVF
                     AVGRELSPGEAAGTAMAVTNMIVMLGAMFLQPLVGHLLDFSLSTHLSDTTGIVVDNMS
                     KLYTVDDYQFALSIIPLGILIAAILTFFLKETHAKAPK"
     gene            5433..6710
                     /locus_tag="JBH85_04215"
     CDS             5433..6710
                     /locus_tag="JBH85_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945398.1"
                     /translation="MQKHLNNMTTKKQISYGVLVCFIGAVFYCYEFILRIVPGALQTE
                     LSTALGHISATTFGQISALYYFAYSPMQMPVGMLMDRYGPRRLLTFACLCCALGSWMF
                     TLTWSIVLVGIGRFLVGFGSSFAFVGVLSLALHWLPRRYFSLVAGLITTLGMLGLVYG
                     EIKITEWSEVIGWDHVLMHIAMIGSALCILTFFVVRDGPEGYQPNKYPWPEFFHNVLK
                     VLTSHEVWLIGFVGACLYTSLSVFGELWGKTYLEQAHHLTKVEAAKTVSAVFLGWAVG
                     APLAGYISDITRRRLLPLVIGAIVSLICISFVLYCPGLSYLTLNILLFLYGVFSATEI
                     IVFIMAKECSGAKLSGTVFAVTNMIISLAGAIFQPLVGKLLDTFGDSGIVAGEHIYTV
                     DDYQVALSILPISLLLVTILAFFIKDKDHSNNS"
     gene            complement(6739..7557)
                     /locus_tag="JBH85_04220"
     CDS             complement(6739..7557)
                     /locus_tag="JBH85_04220"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HAU0945399.1"
                     /translation="MVKIRPFLKWAGSKYNCLNEIISSLPTGQRLIEPFAGSGVVFMN
                     TSYSSYLLAESNPDLVNIYRILQLNGESFIDYCQQYFTPEANCKEKYYELRTEFNNLM
                     DSNQKSAVFLYLNRHGYNGLCRYNSKGKYNVPFGLYEKPYFPRKEMMLFYKKCLSAQF
                     IHDDFRNTFALAEPGDVIYCDPPYVPLTENNQTLPYNQKLFSLEDQIELAELAQETAS
                     KGIPVIISNHDTEFTRHHYKKAQIKSFYVPRWISCRSQMRLPVKELVAVFNCPS"
     gene            complement(7728..8924)
                     /locus_tag="JBH85_04225"
     CDS             complement(7728..8924)
                     /locus_tag="JBH85_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003635700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan/tyrosine permease"
                     /protein_id="HAU0945400.1"
                     /translation="MINSKLIGGILLIVGTSIGGGMLALPVSTAEVGFANSLFFLFFC
                     WLVMTAGALLILEVNLRLPAGSNMISMAKSTLGLPGQVIAWITYLLLLYTLLAAYISG
                     GSDVFSSLLHKAHIDLPNWITSVIFTAMFSLIVYSGIRSVDYVNRGLMFGKLGVYILL
                     VIIISPHVSAAGLTGGSAKAFTGTLMILVTSFGFASIVPSLRDYFNDDIRSLRRVILF
                     GSLIPLFCYIVWDAVIMGVISREGENGLLSLMNSDHATSGLTEALSQSVSSQWISGFF
                     GFFTSICMVTAFLGVSLGLFDFLADGLKLKKSGNQGKYTLALTFIPPLAVVLFNPGIY
                     LHALSYAGVCCVILLLLLPAIMAWKGRQTCSQSPSETHLIPGGNPALSLIGFIAIGLL
                     IIAIMY"
     gene            complement(9125..10315)
                     /locus_tag="JBH85_04230"
     CDS             complement(9125..10315)
                     /locus_tag="JBH85_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan/tyrosine permease"
                     /protein_id="HAU0945401.1"
                     /translation="MRSRFIGGILLIVGTSIGGGMLALPVANAATGFWQSSLFLLICW
                     AFMTFGAFFILEANLYLSRGKHMVSMAKATLGDYGLLTAWISYLFLLYTLLSAYISGG
                     ADVLNSLLSKVNWHLSDWQASSLFTLIFGLVVYGGIHSVDVANRALMFGKLAVYCILV
                     ILIAPHIEFHYFQHGDYRQIGGAIMILITSFGFAIIVPNLRDYFDDDIKTLKKVIFIG
                     SLIPLICYIAWDAVIIGSLPSEGTSGLESLMQNPRTTSALASLLTDKVENTTISALFN
                     FFTSICMLTAFLGVSLCLFSFLADGLKLRERGRHGIGLFVLTFLPPLLIVIYYPGAYI
                     YALRYAGIFCIILLLLLPALMCYFGRKRYKSPFWVPGGKISQFAVIIISVVLLAHEFI
                     ALFK"
     gene            complement(10326..11075)
                     /locus_tag="JBH85_04235"
     CDS             complement(10326..11075)
                     /locus_tag="JBH85_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HAU0945402.1"
                     /translation="MRNLMRCLIMIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFH
                     PPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTASGTLIGAAAGGTVGLVASIYRDSK
                     RKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQ
                     STIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNA
                     IIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK"
     gene            11249..11509
                     /locus_tag="JBH85_04240"
     CDS             11249..11509
                     /locus_tag="JBH85_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945403.1"
                     /translation="MKIPVQLKNIGGNIPENDIALQVSYFIKSQNDELLPQSDAYIAP
                     ASGKIDVSFGNNLARNKDVFFAVISTADKKIILLNLKDDNWV"
     gene            11890..12747
                     /locus_tag="JBH85_04245"
     CDS             11890..12747
                     /locus_tag="JBH85_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0945404.1"
                     /translation="MENYMSKKAIAISIVIALFFITAIWFAYSFVKQEENQNWLTLYG
                     NIDIRDVSLSFRVSGRILSMDVDEGAHVKKGQVLARLDKDTFIANLEMAKAQLEQAIA
                     NQKNASRTYKRREQLVDDGAVSKALFDDAVAMKDSSSAEVSVAKANLEKAQISLNDTE
                     IHAPTHGTILTRIQEPGAIVNVAEPVYTLAIDNPVWVRTYIDEPFLGRIYPGQDALVY
                     TDSNPEKPYKGHIGFISPQAEFTPKIVETTQLRTDLVYRIRVVIDQPDNGLRQGMPVT
                     VKIHLKANS"
     gene            12750..14492
                     /locus_tag="JBH85_04250"
     CDS             12750..14492
                     /locus_tag="JBH85_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0945405.1"
                     /translation="MNSSKPLVSINGVSKCFPGNTDPALDNVSATIFEGQITGLVGPD
                     GAGKSTLMRLICSLMLPTQGTITVDSLNTRTDSEKIHAITGYMPQKFGLYEDLTIIEN
                     LRLYAELRNLYGEKREEQFRTLLKFTALEPFQKRLAGNLSGGMKQKLGLACALMGEPK
                     LLLLDEPSVGVDPISRRELWTMVQGLLGRGMGVVWSTAYLDEAEKCDQILLLNAGKPI
                     YHGKPGDFLQKTKDRTFQICGVSLLNRRQALMNALNTPEVIDGVIQGKNIRIVISDKK
                     IKPSLDGITREPGVHFQEVESRFEDAFIDSLKTKISGRSLLAEHIAEKPHSDKPIIEA
                     RKLTKRFGSFTAVSSNEFTIKRGEIFGLLGPNGAGKSTTFKMMCGLLQPTQGQAFVMG
                     LDLKTSSSEARSRIGYMAQKFSLYSHLDALQNMRFFSGLYGLSGERQEAQINSMIEIF
                     DLKKHLKQNSGDLPLGFKQRLALACAVMHEPDVLFLDEPTSGVDPLTRREFWTHINGM
                     VNKGVTVMVTTHFMDEAEYCDRIALIYRGKNIATGTPDDLKDKVRNSTLPNPTLEDAF
                     IELIRLDELREPVH"
     gene            14510..15631
                     /locus_tag="JBH85_04255"
     CDS             14510..15631
                     /locus_tag="JBH85_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0945406.1"
                     /translation="MNIRYLKALVIKETLQIIRDPSTILIAFVLPLILLFIFGYGVNL
                     DTDQVKFGLALESYDSSTVSLSQSFSSSRFLDVSISTNRQAFRYGLVNGTIRGFIDIP
                     QRFTADSLSGNPKPALQNIVDGSYPQVAGFAENYALGALQTWISSQAYEHGQMTLKSG
                     INLEPRYWYNQELKSRNFLIPGSIVIVMTLIGTLLTSLVIAREWERGTMEAMMATPIS
                     IVDIILGKLIPYFVLGMGSMFLCTIIATWYYGVPFQGTLLALTLVSAVFLVAALGQGL
                     LISTLARDQFVASQLALMSAFLPSFILSGFIFEINSMPKWIQLLTHLFAARYFVTSLQ
                     TLFLTGNIWSLLIRCLFAIALIGFAFFFITAHKTRKRLD"
     gene            15631..16755
                     /locus_tag="JBH85_04260"
     CDS             15631..16755
                     /locus_tag="JBH85_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0945407.1"
                     /translation="MAKLSPATRIFALVIKEILTLFKDPKGRIVLIAPPLLQLLIFSF
                     AATMEIKNISIGILNQDSGKHGYEVIQRFIGSPTFSKVFFIQKQSDIKPIIDNQEAMV
                     VMTIPQDFSRKIESNSQANIQLILDGRRSNATQIVNGYISSIIENYNQEIQKTHGAIM
                     MPPVMVTRSWFNENLLYLWFTVPSLICILSMLISLVVTALSVARERELGTFDQLLVSP
                     LTPYEILIGKTIPAIIIGLAEGLLMWVAAVWLFDVPFYGSPLLMVYILFIFIMSTVGV
                     GLFISSMCKTQQQAILGVFIYMVPVVTLSGYASPVENMPEWLQDLTWFNPLKFTLIAV
                     IGIFLKGMSALEVFITTWPLLLVGAVTLFIAGWFFKQRME"
     gene            16764..18203
                     /locus_tag="JBH85_04265"
     CDS             16764..18203
                     /locus_tag="JBH85_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HAU0945408.1"
                     /translation="MDRKLVLLFSISCLFGCTVGPDYQRPDIKIQEKWPTSKVEKKIS
                     SSAPVHLTWWKAFHDPLLDRYINEAATNNLDIKAAEARIRQARAMQQISLANFYPQIN
                     GSASANSLQISKGTLEGIFANSPTYTLIDRNQWIYNLGFDAQWELDLFGKTRRKVEAS
                     KASLEEAYESRRTILLSTIAEIARSYIELRGAQQLYGIAQKNVELQRKTLALVRQRYK
                     AGVSSEVDVSLAEGQLKNTESVLPNYITQIQVNAYQIAVMLGKDPQTILKDIAKIQSL
                     PKPPQKVPMGLRSDILRQRPDIRATERQLASAVAEIGVAVADFFPQFNLSVSNLAFQS
                     TSVDTLFQSSSGFWLMGPQVSLPIFHGGQIRANVESKKAVAQQAAIQYKKIILQALQE
                     AQSALVRYSQSLDTNHSLRAAIIANKRAVQFAKKRFQYGEDDYLSLLQSEAALLNAET
                     QEVNSEVSSLTALISLYKALGGGWENFEA"
     gene            complement(18535..20355)
                     /locus_tag="JBH85_04270"
     CDS             complement(18535..20355)
                     /locus_tag="JBH85_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HAU0945409.1"
                     /translation="MPNNCPQALLRGIMKKLLIFLCGLLCSFNLFALSGQAYMDRFNR
                     YLAWYEQLPINPSPEFLEFVKENTPLANKLRDKWLYELARIKDWEDYNKYYQPTNDIN
                     LRCFAQIAKFNLGLYKEAIAGSIPIWLSGESRPQACNTLFALLLKQDNFDQKFITQRI
                     ALALDKRNVLLARYLLKQYKTPHDTEIKNLTSVYENPSNISKLNPGKLNDYFYLYGLK
                     RLVSINMDKAVKLWQEKKTNIMLNERQKQDFLAHLALYKAMRNHADAQEWFAKIKPEY
                     YTDVLVDWQIRFALKNKNWKQVEKLINNSPNKEMPCWQYWLARSLEEQGKKAEAIKIY
                     EPLAKNRHYYGFLASKRLKKRPSFDNEKPTTNTEILKPYQPVIEQVKNFYNSKQLLQA
                     SRLLNDFISELPKEEASALVYWIATELKWHGKSVYLSNNDTLNNQLALRFPLAYKDTI
                     KVYASKYAIPPELVYAIIRQESGFREDVTSSAGAKGLMQVMPQTASAVSKTSKIPYSD
                     HKQLFLSQKNINIGIAYLQHLTKRFSNHPVLVAAAYNAGPRQVVYWLKNHPPKEIDIW
                     IETLPWQETRNYLKNVMAFYIVYQYRLNQQPDMNRFLTPL"
     gene            complement(20358..21011)
                     /gene="rpe"
                     /locus_tag="JBH85_04275"
     CDS             complement(20358..21011)
                     /gene="rpe"
                     /locus_tag="JBH85_04275"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAU0945410.1"
                     /translation="MTFQILPSLLSADMTRLGEEVDAVMKAGADFIHFDVMDNHYVPN
                     LTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAFAKAGAKRISIHPDATIHLDRSL
                     QLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKI
                     RQQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI"
     gene            complement(21227..21691)
                     /locus_tag="JBH85_04280"
     CDS             complement(21227..21691)
                     /locus_tag="JBH85_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HAU0945411.1"
                     /translation="MKALIAKTYLLADKIFDFLAPIFILLTRLYLAQVFFLSGLTKIS
                     NWQATLSLFQNEYMVPVMSPTLAAYLGTACELGFPVLITLGLGSRLVLFGLFLFNLFA
                     VFSYQFLWTPDGAVGLTDHMQWGIMILMLLCTGPGKLSIDYLIRRFYLKLDN"
     gene            complement(21688..22467)
                     /locus_tag="JBH85_04285"
     CDS             complement(21688..22467)
                     /locus_tag="JBH85_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HAU0945412.1"
                     /translation="MRNTLLETIQKEWIAQFKEEALSSPLKNRLARSNFDGISVYMES
                     HHATLFNHLKSTFPLCMRLVGENFWYALLHRYINNCESTQYDINQYGDSLPQFIANFE
                     PAKELPYLQQLCAIEWHWHTLKLLSPVNPFDFEAFSSIDEISFQSLCFHLTPNLKILC
                     SEYPIYQIWAMNYFQQDKQIQISGCPEKVVIYQHNDLPCIMLISEEEYIFLELLSSGN
                     QTPWQKVVTELSKWISEEKIGDTLTKALRYQWINHFSLEAI"
     gene            complement(22460..23329)
                     /locus_tag="JBH85_04290"
     CDS             complement(22460..23329)
                     /locus_tag="JBH85_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HAU0945413.1"
                     /translation="MYSNHSTDQAAPYSGCSGIGLRLEHIDDILKEQPTVDYFEVLAD
                     NYMKQSGAQFKQLLKIAEFYPMSLHSVGLSIATSSEPDYQYLQQIKNLAHCLNSKLIS
                     DHLCWTHANQFFTHELIPFPYTEETLSFIIEKTNCIQEYLNQPIMYENVSRYVTYRQN
                     TLSEAEFLNELSTATGCGILLDINNLYVNWYNHGDDPDKYLHSINTKNVWQMHLGGFS
                     KQEGYLLDSHSDKVYQDVWQLYEKAQNLFINTPTVIEWDNDLPDFSLLYDEMCKAKAI
                     IKRVAERSMNHYA"
     gene            complement(23335..23589)
                     /locus_tag="JBH85_04295"
     CDS             complement(23335..23589)
                     /locus_tag="JBH85_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2282 domain-containing protein"
                     /protein_id="HAU0945414.1"
                     /translation="MNNISKITMAAVMAAGLSMATIPANADTPNDMEKCQGVAKAGKN
                     DCGTAQHACAGQSKTDGSTTDWIYLPKGTCEKLVNGTVKS"
     gene            23927..>24922
                     /locus_tag="JBH85_04300"
     CDS             23927..>24922
                     /locus_tag="JBH85_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HAU0945415.1"
                     /translation="MAKDTKIINLALQGGGAHGALAWGIIDRLLEDGRIHFDAISATS
                     AGAMNAAVLAYGFATGGKEGAREALHQFWKMVSDAGQIYNPLKKTPLEELLGIGIENS
                     MSFFMFDLMTKILSPYQFNPLNFNPLKEILEQIVDFEKIKSCKSIKIFISATNVRTGK
                     INVFDNKKISADAVMASACLPFMFQAVNIGEDYFWDGGYMGNPAIFPLIYNSECRDIL
                     ILHINPIYREHVPDTAAEILNRVNEISFNSSLMREMRAIAFVTKLIDSGWIKDEYKNN
                     LRKLYLHAIRADVSMESSSVASKLNPEWSFISHLYEEGRKKGEEWLKSNFKHLGKM"
BASE COUNT         7392 a         4474 c         5250 g         7806 t
ORIGIN      
        1 gagggaatga ttaattaaac tatatcttct ctccaaatag atgagggaat gattaattaa
       61 aactagagtt ttctaaattg atggctatgc gagttcattg attttagagt gataaatttt
      121 ttgtttatga gcaatgatgt aatttggtat ttttaaagaa aattgtagta attggcgctg
      181 atatttaaac aaaaactccc tctcccgcga aagaaattgt ataaaaaatt tgggtatgat
      241 tcgcgggaga ggggtgggga gaggggaata agtggttcca gctgatgcta aattattgaa
      301 acaagcaaaa tctctccgta aaagaagcac tgatgctgaa aattgtttat ggtactatct
      361 aagagcacat cgattaaaag gatacaaatt taaaagacaa gttcctattg gaaattatat
      421 tgttgatttt gtttgtattc agagaaaact catcgttgaa ttggatggtg ggcagcatct
      481 tttaaataaa gagtatgata aagaccggag cgcctatttt agcacattaa gttataaggt
      541 tttgaggttt tggaatgatg acgtgttatt gagaactgga gacgtacttg agagtattgt
      601 cagatgcttg gaagaatcat aaggttgata agattaacat ttaactgttc agtaatgaca
      661 gcggagtagc ctaagtaatg aaagtaatta gttttaacgc caatggcata cgctcttctg
      721 cccgtaatgg attttatgat tggcttgtag ggcaggatgt tgattttgta tgtattcagg
      781 agacgaaatc gcaagtagag caattaatcc cggaagaact ttattttcca agggattatt
      841 tttgtgatta ttttgatgct gaaaagaagg gctacagtgg ggttgccatt tattcaaaat
      901 ataaacccgt gcgtattgtg aaggggttgg ggtttgatta ctgtgataaa gaagggcgtt
      961 atatccaatt tgattaccct aaattaagtg tgatttctct ttatttacct tctggaacaa
     1021 gtggtgagga tcgacaagaa gtgaaatatg cttttctgga gcaatttgcc agacacttga
     1081 tgaatttaaa aaatgaggga agagagttaa ttatttgtgg tgattacaac atcgcgcata
     1141 aaaagataga tttaaaaaat tggcgaggaa accagaaaaa ctcgggattt ttacccgaag
     1201 aacgtgcctg gatggatgag ttatttggtt ctatggggtt tgtagatgcc tttagggtac
     1261 ataatcagga agaagagcaa tatacctggt ggtcttatcg agctagagcc tgggaaaaga
     1321 atgtcgggtg gcggattgat tatcaggtga ttacgcctgg tctgactgaa tatgtcgcgg
     1381 acagccgaat ttttcgcgaa gcacgttttt cggatcatgc ccctttaatg attgaataca
     1441 agggagactg gtgtgtttaa actcgctagc tggaatgtta attcattaaa agtccgtctg
     1501 gaacaggttt tgcaatggct tgagtcttca caagttgatg tgcttgccat gcaggagact
     1561 aagctgactg atgacaactt tcctgttgct tcatttacag acaaagggta ccacgtcatt
     1621 ttttcaggtc agaaaactta taacggggtg gccattatta gtcgatatcc tatgacagat
     1681 attcaaaccg atattccaga actggaagat ccccagcggc gtatcctggc tgctacggta
     1741 aaaggaatca gattgattaa tctttatgtg cctaatggtg gagaactgac ttcagacaag
     1801 taccaatata aactggattg gttaaagaaa gtaactcgct tcattcaaca tcagttaagc
     1861 atttattcta aagtagcagt tgtgggtgat tttaatattg cgcccgaaga tcgggatgtc
     1921 catgatccag ttgagtggga gggttgtgtt ttggtcagtc ctgctgaaag gcaagcattt
     1981 atggagatac ttgaattggg tttacatgac agtttccgta actttgctca ggaagaaaaa
     2041 gcgtttagct ggtgggacta tagagccgca gcattccgac gtaatcgtgg tttgcgcatt
     2101 gatcatgtgc tattgagcca tgaattaaac gctttatgcc gacaatccaa aatcgataaa
     2161 gaaccaagaa aagcagagag gccttccgat catgcgccgg tttgggttga gttagaatta
     2221 taaatgtctg aggtgtttga gaaaaaattg ctttatgaga tcatttctgc tattgttttg
     2281 actcattttt gtagagtatg gtgcttggca atagtgtcca ggtggcgata cttatttgaa
     2341 actagaagag agtggtatta tgaaagcatc agttcatcct gattatcaaa cagttaaagt
     2401 aacatgcagc tgtggtgaag tatttgaaac tcgttctact ttgtgtaaag atttgaacat
     2461 agaagtttgt tcaatgtgcc atccttttta tacaggaaaa caaaagctgg ttgatactgg
     2521 tggccgtgtt cagaaattcc gtgacaggta taatatgcgt actgggcaag ccaaatcaaa
     2581 agaataatat tttaattttt gagtttttaa caaaggcaca aattttttgt gccttttctc
     2641 taagagagga ttaaaaattc aaatttttga tatgatgttt tcaccgcgtg atctgaaata
     2701 gagagtatgc actttggata atgaagtaat aaagcagcgg gcattggatt atcatgagtt
     2761 ccctgttcca gggaaactct ctgttcatct tacaaaatcg actaattccc aagacgattt
     2821 gtctttggcc tatacacctg gtgttgctgc tccagtttta gccatagctg aagcgcccga
     2881 aaatgcttat cgttttacca gcaaaggcaa tctggttgcg gtgatgacca atggcactgc
     2941 agtgttaggt ttgggaaatc ttgggccttt agcgagtaag cctgtaatgg aaggtaaagc
     3001 ggtattattt aaacgatttg ccgatcttga tgtctttgat atagaaatcg atgcagagga
     3061 tcctcagtct tttattgcta ctgcaaagcg cattgcccca acttttggtg gcataaatct
     3121 ggaagacatc aaagcgccag agtgttttga aatagaacaa gcattgattc agcagttaaa
     3181 tattcctgta tttcatgatg atcaacatgg tactgcgatt gtagttgcag caggtttatt
     3241 aaatgcgttg gaactacaga acaagaaatt aagtgatatt aaaattgttt gtatgggcgc
     3301 tggggctgct ggtattgctt ctatgcgact tcttgtggca ttaggagctc ccaaaagtaa
     3361 tatgctgctg ctagatacca agggagttat tcatgatggc cgcgaggatt taaaccccta
     3421 taaatttgct tttgccagaa atactctctg tcgtacactt gaagatgctt tggtcgatgc
     3481 cgatgtgttt attggcgttg caaggccaga tttgctgaat gctcatttat taagtttgat
     3541 ggcgcccaat ccagtgattt ttgctttatc taaccctgat cctgaaatca aacccgaatt
     3601 ggctcatagt gtgcgtaaag atctggtgat ggcaactgga cgaagtgatt atcctaatca
     3661 agttaataat gtattatgtt ttccttatat ttttcgtggt gcgctagatg ttcgtgccac
     3721 ttgcattaac caggccatgc aaattgcagc tgttgaagcc attcgtcaat tggtgcatga
     3781 gcctgttcct caggtagtga aggacaatta cccaggagtt gtgaattggg attttggacc
     3841 tgactatatt attccaaagc ctattgatcc tcgcttaaaa gagagggttc ctgctgctgt
     3901 agcgaaagct gcaatagcca gtggcgcgag tcaatttaat aatttataag gcagtaaatt
     3961 caccttatag aagtaagcag ttgaggtctt aatagcgttt aaacgaagga tatctttgaa
     4021 agttctttgg aaaccatcag ttggttttct ggaaggttgc aagatgggct tttttgcgct
     4081 tacaagatac gctgggatgc ataaatggga actaagatgg gatttaagaa tacttgacta
     4141 aattgttaag gaggtaattt tgcatactga aaaccgaact aactatgcat tgataggatg
     4201 gctactttgt gggctgggag caatatttta tagttatgag tatttgttac gcatcgcacc
     4261 aagcgtaatg gaagacgctt tacgatctca ctttaattta tcagcatctg gttttggttt
     4321 tctgtcatct ttttattatt ttgcttatgt tcctatgcaa ttgccagttg gagttttact
     4381 ggacaggtat gggccaaaaa ggctattaac tctggcgtgt ttagtatgcg ttattggaac
     4441 gtatatgttt acggggacaa ctattttttg ggtagccgca acaggtcgtt ttttagttgg
     4501 atttggttct gctttcgctt tcgtcggtgt gttaaagatc gcaactcttt ggctgcctga
     4561 aaatcgattg gctatgatct ctggtatgac gtcggcacta ggccccatcg gtgctatgct
     4621 gggcgataac tttctggagt tattcatcgt taagatgggt tgggttaaga cacttaacat
     4681 gactgcagct tttggtattg tattgacttt agttttgtgg gttgggatca gggataggaa
     4741 gggacagcac aggcaaagcg gtacagttcc cactcttaag aaagggttag ttgatctggg
     4801 aattattatt accagccgac agatatgggt taatggaatg tatggctgtt tagtttatct
     4861 gccaactacg gtttttgcag agttgtgggg tattccctat ttacaccatg cccatggttt
     4921 aactactcaa gcggcaggat tagctaactc tgtactattt ttgggattta ttattggtgc
     4981 tccaataatg ggatatattt cggatcgttt gtatcgacgt aaattcccaa tgctaattgg
     5041 tgctagcggc gctgcaattg tcatgatgat gattttatat ttgcctggat taaatgaatc
     5101 caatattcaa gctttaatgt ttttattagg attgctttat agcgctcaag ctatagtttt
     5161 tgctgtgggc agagagttga gtcctggtga ggcagcagga acggcaatgg cggtaactaa
     5221 tatgatagtc atgctcggcg caatgttttt gcagccgttg gtagggcatt tattagactt
     5281 cagcttatca actcatttaa gtgatactac tggtattgtt gtagataaca tgagtaaact
     5341 atataccgta gatgattatc agtttgcctt atccattatt ccattaggta tattgatagc
     5401 ggccatttta actttctttc taaaagaaac tcatgcaaaa gcacctaaat aatatgacta
     5461 ctaaaaaaca aatttcatat ggcgtcctag tttgctttat cggggctgtt ttttactgtt
     5521 atgaatttat tctcagaatt gttccgggag ctttacaaac agagctaagt acagctttgg
     5581 gacatatttc tgctaccacc tttggacaaa tttcagccct gtattatttt gcatattcac
     5641 ccatgcaaat gcctgtaggg atgttaatgg atcgctatgg gccgagacga cttttgactt
     5701 ttgcctgttt gtgttgtgcc ttgggctcgt ggatgtttac tctgacctgg tcaattgtgc
     5761 tggttggaat tggtcgattc ctggtgggat ttggctcatc cttcgctttt gttggtgtct
     5821 tatctctggc tttgcattgg ctgccacgtc gttatttttc tttagtggct ggtttgatta
     5881 ccacgctagg tatgctagga ctggtttatg gtgaaatcaa aataactgaa tggtcagagg
     5941 tcataggctg ggatcatgtt ttaatgcaca ttgcaatgat tggttctgcg ctgtgtatct
     6001 taactttctt tgttgttaga gatggtccag aaggatatca acccaacaaa tatccttggc
     6061 ccgagttttt ccataacgtg cttaaggtac tgacgtccca tgaagtgtgg cttattgggt
     6121 ttgttggagc ctgcctttat acttcattat cagtatttgg agagctgtgg ggtaaaacct
     6181 atttggagca agcacatcat ttaaccaaag tagaagccgc aaaaactgtt tctgctgttt
     6241 ttcttgggtg ggcggtagga gcccccttgg ctgggtacat atccgatatt acccgcagac
     6301 gattgttgcc tttggtgatt ggtgcgatag tttcattaat atgcattagt tttgttttgt
     6361 attgccctgg cctatcctat cttaccttga acatattgct attcttgtat ggtgttttca
     6421 gtgcaactga aattatagtt tttattatgg ctaaggaatg tagtggtgcc aaattatcag
     6481 gaacggtttt tgcagtaacc aatatgatta tttctttggc gggtgctatt tttcaaccgc
     6541 tcgtagggaa gttactggat acatttggcg acagcggtat agtggcaggg gaacatatct
     6601 atacggttga tgattatcaa gtggctcttt cgatattacc tatttcatta cttttggtaa
     6661 ctattctggc tttctttatt aaagacaaag accattccaa taactcttaa tcttgataaa
     6721 gactcttctt tgtctttgtc aggatggaca gttgaatact gcgactagct ctttaaccgg
     6781 tagtcgcatc tgacttctgc agcttatcca gcgaggtaca tagaaactct ttatttgtgc
     6841 ttttttgtaa tgatgtcgcg taaattcagt atcatgattc gatatgatga caggaatccc
     6901 tttggaggct gtttcctggg ccaattcagc caactcaatt tgatcttcta aagaaaataa
     6961 tttttggtta tagggtaatg tttgattatt ttcggtcagt ggcacatagg gtgggtcaca
     7021 gtaaatgaca tcaccgggtt cagctaaggc aaaagtgttt ctaaaatcgt cgtgaatgaa
     7081 ctgtgccgaa aggcattttt tataaaacag catcatttcc ttacgtggaa aataaggttt
     7141 ttcgtaaaga ccaaaaggga cattatattt tccttttgaa ttgtatcggc acaaaccatt
     7201 atatccatgc cgattaagat agagaaaaac cgctgatttt tgatttgaat ccattaaatt
     7261 attaaattca gttcgcaatt cataatattt ttctttgcaa ttggcttcgg gggtaaagta
     7321 ttgctggcaa tagtctataa aggattcgcc attcaattgt agaattctat aaatattaac
     7381 caaatcagga ttgctttcag ccagtaggta agatgaatag ctggtgttca taaataccac
     7441 gcctgaacct gcaaatggct ctattaaacg ttggccagtg ggtaaagaag agataatttc
     7501 atttaaacaa ttgtacttac ttcctgccca tttcagaaaa ggtctgattt ttaccataac
     7561 ttataaaatc aatattttag gatgaagtat ctcttatttt caggataaag aacaggataa
     7621 tgaataaagg ttccttatct gatttacaaa atagcccttg tactggcttc gctttatttt
     7681 aaaatatatc aaatttgtac tttttaacgc tgatattcag gctttaatta atacatgatc
     7741 gcaatgataa gcaaaccaat ggcgataaat cctataaggc ttaaagctgg gtttcctcca
     7801 ggaatcaaat gagtttctga tggagattgg ctacaggttt gtcttccttt ccatgccatg
     7861 atagcaggta ataacagcag taaaatgaca caacaaaccc ctgcataact taatgcatgc
     7921 aggtagatac ctgggttaaa caacaccacg gccaatggag ggataaaagt gagagccagc
     7981 gtatacttgc cttgattacc agatttttta agctttaatc catcagcaag aaaatcaaat
     8041 agtcctaatg aaactcccag aaatgcagta accatacaga tcgaagtgaa aaaaccaaaa
     8101 aatccactga tccactggct gcttaccgat tgactaagtg cttcagtgag gccgctggtc
     8161 gcatgatccg agttcattag ggacaataaa ccattttctc cctcgcgtga gataacgccc
     8221 ataatcactg catcccagac tatgtagcag aataatggta taagagagcc aaacaaaata
     8281 acacgacgta agctacgtat atcatcgtta aaataatcac gtaagctcgg cacgatggat
     8341 gcaaatccaa aagaagtgac caagatcatg agagtaccag taaaggcttt cgctgagccg
     8401 cctgttaatc ctgctgcgga tacatgggga ctgataatga taaccaataa aatatagacg
     8461 cccagtttgc caaacataag tccacgatta acgtagtcta cagagcgtat accactatat
     8521 acaataaggc tgaacatggc agtaaatatt acagacgtta tccaattcgg taaatcaatg
     8581 tgggccttat gcagcaggct gctaaataca tcgcttccac ctgaaatata agctgccagg
     8641 agggtataaa gaagaagaag gtaggttatc caggcaatta cctgacctgg caggcccaag
     8701 gttgatttcg ccattgaaat catattgctt cctgccggga gtcgtagatt tacctcaaga
     8761 attaataaag ctccagcggt catcaccaac cagcaaaaaa acaggaaaaa taatgagtta
     8821 gcaaatccca cctcggctgt agaaacaggt agcgctagca tcccaccacc aatcgaagtg
     8881 cctactatga gtaatatacc accaattaat tttgaattga tcacgaagta taacccaaaa
     8941 acagtacaaa tatagaacaa aatgatactt tgttcctcaa aaaaagtcaa cttccttatt
     9001 gtatacctcg atcattttct tttcgcaaat gacctggcgt tcaatttata catcctgttt
     9061 atcaggtttt aatgttttac tgctatcaaa gtaaaaataa cgccagtaat aacattaatc
     9121 atttttattt aaaaagcgca ataaattcat gtgccaataa gactacagaa ataataatca
     9181 ctgcaaactg tgatatttta cctcctggaa cccaaaaggg tgatttgtaa cgctttctgc
     9241 caaaataaca cattagggct ggcaataaca gtagtaatat gatgcaaaat atacctgcgt
     9301 agcgcagagc ataaatataa gcccctggat aataaataac gattagtaaa ggcggcaaaa
     9361 aagtcaaaac aaataaacca attccatggc ggcctcgctc tcgcaatttt aagccatcag
     9421 caagaaaact aaataaacaa agtgatacac ctaagaaggc agttaacatg caaatggagg
     9481 taaaaaaatt aaagagggcg ctgattgtgg tattttcaac tttatcagtt aacaaactgg
     9541 ctaacgcgct ggttgtacgc ggattttgca ttagactttc aagtccgcta gtgccttctg
     9601 aagggagtga accaataatt acggcatccc aggctatgta acatatcaaa ggtattaatg
     9661 aaccaataaa aataactttt tttaatgtct taatgtcatc atcaaaataa tctctcagat
     9721 ttggcacgat aatagcaaaa ccaaaggaag taattaaaat cataattgcg ccaccaattt
     9781 gtcgataatc accatgttga aaatagtgaa attcgatgtg tggagcaatc aggataacaa
     9841 gtatgcagta aacagctaat ttaccgaaca tgagagcgcg gttagcaaca tcgacggaat
     9901 ggatgccacc atataccacc aggccaaaaa ttaaagtaaa taacgaactt gcctgccaat
     9961 cactgagatg ccaattgact ttggacaata gactgttcaa tacatcagcg ccgccggaaa
    10021 tgtaagcgga aagcaaggta tacaataaga aaaggtaact aatccaggca gtaagtaacc
    10081 cataatcgcc cagagttgcc ttggccatgg aaaccatgtg ttttcctctg gacaaataga
    10141 gatttgcttc caggatgaaa aaggcaccaa aggtcataaa ggcccagcag ataagaagaa
    10201 acagagaaga ttgccaaaaa ccggttgctg cattagctac tggtagagcc aacatccctc
    10261 caccaatgga ggtaccaact atcaataaga tgccgcctat aaatcttgaa cgcattaata
    10321 aacctttatt ttacataagc catttgtggt tgtgggggtt gagcagggct tgtaaaccac
    10381 tggatctcga ttcttctgtt ctgagcgctt ccatgaataa tagcattgtc agaaatcgca
    10441 ttcttatctc catagccttc tgcttttagt cttttggctg caataccatt agcccagaga
    10501 aaagtcatca ttgtttcagc ttgagcttga gaaagttttc tcttatggct gcgtgatccg
    10561 acattatcag taaatccggc aacataaatc gtactttgag gataaaaatt taacagtctg
    10621 atgacattgt ttaggccagg atagcatatt tcattaaggc gagggctgct aaacatgaaa
    10681 tatttgtctg taggaataat taatgttctg gtatctccat attcaacata ctgaatatcc
    10741 tgcttttgca gatctctgat gattttgcgt ttgctgtcac ggtagatact cgcaaccaga
    10801 cctacggtac caccagccgc tgccccaata agagttcctg aagcagtacc actggctatt
    10861 accccagcta cagcaccaat ccctgtatct actcctactc tcttaacagc tcgtctatcg
    10921 ggttgaaagt tgttataagg gggatgaaag cagcccgcaa gaaagcaaat cattaatcca
    10981 taaccaagga ttcgtgtttt ggctaatttg cgtgacatat ccactccttt aatcaatgat
    11041 ttaatcatta ttaagcatct cattaaattt cgcaatctaa cactttatat ttttacagga
    11101 cgtataaaaa aataattttc ttcgtctata attgaaatag tcaaggaaga aacagagtga
    11161 tgcactgtga aaggaaattc aatgtgccca ctcccccaaa tgcaaggagc ggtaagcctg
    11221 gctcattacc cgggttaccg aaaaagctat gaaaattcca gtccaactca aaaatatagg
    11281 cggtaatatc ccagaaaatg atattgcttt gcaagtttct tattttatta aatctcaaaa
    11341 tgacgaattg cttccccaaa gtgacgctta tattgctcca gcttcaggca agattgatgt
    11401 cagctttgga aataatctcg cgcgaaataa agatgttttc tttgctgtaa tcagtactgc
    11461 agacaagaaa ataattttgc tgaatcttaa ggatgataat tgggtttgat atgggcatcc
    11521 agaatcaggt aatgcaactc tatgtttata tgagatacac cctttagggg taaagtgtct
    11581 gtgtaaattt ggctccattc cctaacggcc gtagctctga ttattaatca gcatcaactt
    11641 gctctatgtc cccgatttaa aactatttta aaataataaa ttatggcatt atgactttct
    11701 atttatgctc aattgataag aacagaactt acgaaaaaaa ccaaggtcca ggcaaaaaat
    11761 gtttgtaatg agggagttta gatagactaa atgaccgcat tgaaaacatt tttaacaaag
    11821 agatcggagt ttttcataag tcctgaagaa aatataatgc gaacaaaggg ttagtacgcc
    11881 aaagaattca tggagaacta tatgagtaaa aaagcgatag caataagtat cgtcatcgca
    11941 ctttttttca tcacagcaat ttggtttgcg tacagctttg ttaaacagga agaaaatcaa
    12001 aattggctta ctctttacgg aaatattgat atacgtgacg tttcattatc ctttcgtgtc
    12061 tcggggcgta tcctgtctat ggacgttgat gaaggtgctc atgttaagaa ggggcaagta
    12121 ctcgccaggc ttgataaaga tacttttata gccaatctgg aaatggcgaa agcccaattg
    12181 gagcaagcca ttgccaatca aaaaaatgca agcagaactt ataaaagacg tgagcaatta
    12241 gttgatgacg gggctgtttc aaaagcgctt tttgatgatg ccgttgcgat gaaagactcg
    12301 agtagtgccg aagtttctgt ggctaaagcg aatcttgaga aagctcaaat atcattgaac
    12361 gatacggaaa ttcatgcccc gactcacggg acgatactga ccagaattca ggagccaggg
    12421 gctattgtta atgtcgcgga accagtttat acccttgcta ttgataatcc ggtatgggta
    12481 aggacttata ttgatgaacc ttttttaggt agaatttatc ctggacagga cgctttggtt
    12541 tacacggatt ccaatccgga aaagccctac aaaggtcata ttggctttat ttctccgcag
    12601 gcagaattca caccaaaaat tgttgaaacc actcaattga gaacggatct tgtctatcgt
    12661 ataagagtcg ttattgatca accggataat ggattaaggc aaggaatgcc tgttactgtg
    12721 aaaatccatt taaaagcgaa ttcatagtaa tgaatagttc aaaaccacta gtcagtatta
    12781 atggagtcag caaatgtttt cctggaaaca ctgatccggc attagataat gtttctgcaa
    12841 caatttttga agggcaaatc acgggtttgg ttggaccgga tggggctggg aaatcaactc
    12901 ttatgcgtct tatatgcagc ctgatgttgc ctacgcaagg aacaattaca gtagacagtc
    12961 tcaatacccg gactgactcg gaaaaaattc atgcgattac tggctatatg ccacaaaaat
    13021 ttggtttgta tgaagatttg accattatag aaaacttgag gctctatgct gaacttagaa
    13081 atctgtatgg cgagaaacgt gaagagcaat ttagaacatt acttaaattt acagcactgg
    13141 agccttttca gaaacgtctg gctggtaatc tctcaggggg aatgaagcaa aaattggggc
    13201 tggcttgtgc cttaatgggt gaacctaagc tgttgttact tgatgagccg agtgttggcg
    13261 ttgacccaat atccagaagg gagttgtgga ctatggtcca ggggctgctt ggaaggggta
    13321 tgggcgttgt ttggtcaact gcttatcttg atgaagctga aaagtgtgac caaatccttt
    13381 tactcaatgc cggcaaacca atataccatg gaaaaccggg agattttttg caaaaaacca
    13441 aagaccggac ttttcaaatt tgtggtgttt ccctgctaaa tcgtcgccaa gctctgatga
    13501 atgcccttaa tacccctgaa gtcattgatg gtgtcatcca gggtaagaat attcgtattg
    13561 tcattagtga taaaaaaata aagccaagtt tggatggtat aactcgtgaa cccggagttc
    13621 attttcaaga agttgaatcg cgttttgaag acgcttttat tgacagtttg aaaactaaaa
    13681 taagtggtcg ctctttgtta gccgagcata ttgctgaaaa gcctcatagt gacaagccta
    13741 tcatcgaggc ccgaaagtta acgaaacgtt ttggtagttt tactgccgtt tcgagtaatg
    13801 aatttacaat caaacgcggt gaaatctttg gtttattagg ccctaatgga gcaggtaaat
    13861 caaccacatt taaaatgatg tgtggtttat tgcagcccac acaaggacaa gcatttgtaa
    13921 tgggactcga tctaaagact tcatcctctg aagcaagaag ccgtattggg tatatggctc
    13981 agaaattttc actatacagt catttggatg ccttgcagaa catgcgcttt ttttctggtc
    14041 tctatgggtt atccggagaa aggcaggaag cacagatcaa cagcatgatt gaaatttttg
    14101 atcttaaaaa gcacttaaag caaaattcgg gtgatcttcc attaggattt aaacaacgtc
    14161 tcgctctggc ttgtgccgta atgcatgagc ctgatgtgtt atttcttgat gagccgactt
    14221 cgggggttga tccattgacc cgacgtgagt tttggacaca tattaatggt atggtgaata
    14281 aaggtgtgac cgtgatggta accactcatt ttatggatga agcggaatat tgcgaccgta
    14341 tcgctcttat ttacagaggg aaaaacattg ccacaggaac gcctgatgac ttaaaggata
    14401 aagtacgtaa ctccacatta cccaatccca ctttagaaga cgcgtttatc gagttaatcc
    14461 gattggatga gttgcgtgag ccggtacatt aacacaggga gaatagtggt tgaatattcg
    14521 ctatctaaag gcattggtca ttaaggaaac tctgcaaatt atccgtgatc ccagtactat
    14581 attaattgcc tttgtattgc ctttaatttt gctttttatt ttcggttatg gtgttaatct
    14641 ggacactgat caagtcaagt ttggcctggc tttagagagt tatgattcgt cgactgtcag
    14701 tctttctcaa tcttttagca gttcccgatt tttggatgta tctatttcaa caaacagaca
    14761 agcgtttcgt tatgggttgg ttaatggaac aattcgtggt tttattgata ttcctcaacg
    14821 tttcactgct gatagtctga gtggaaatcc caagccagct ctgcaaaaca tagttgatgg
    14881 ttcttatccg caagttgccg gttttgcaga aaattatgcg cttggggctt tgcaaacctg
    14941 gattagctcc caagcttatg agcatgggca aatgacactt aagtccggca ttaaccttga
    15001 gcccagatac tggtacaacc aggagctaaa aagcagaaat tttcttattc ctggctcaat
    15061 agttattgtt atgactttga ttggaacatt actcacctcg ctggtgatcg ctcgtgagtg
    15121 ggagagaggt acgatggagg cgatgatggc aacgccaatt tctattgttg acatcatctt
    15181 gggaaaatta ataccctatt ttgtgctagg gatgggttcc atgtttttat gcactattat
    15241 tgcaacatgg tattatggag tacctttcca aggtactctt ttggcactga cattagtttc
    15301 agccgtcttt ctggttgctg ctttagggca ggggttatta atatctactc ttgcaagaga
    15361 ccagtttgtg gcttcgcaat tggctttaat gtctgcgttt ttgccttcat ttattctttc
    15421 cgggtttatt tttgaaatca attcgatgcc aaagtggata caattactca cgcatctgtt
    15481 tgctgcacgt tattttgtga caagtctgca aaccttgttt ttaacgggta acatttggtc
    15541 tcttttgatt cgttgccttt ttgcgattgc actgattgga tttgcattct tttttattac
    15601 cgcgcataaa accagaaaaa ggcttgatta atggcaaaat tatctccagc aacaagaatt
    15661 tttgctcttg tcattaaaga aatattgact ttattcaaag atcccaaggg acgaattgta
    15721 ttgatagctc ctccactcct acagttattg attttttcct ttgcagctac tatggaaatt
    15781 aaaaatattt ctataggcat tttgaaccag gattccggaa agcatggtta tgaagtgatt
    15841 caacgcttta taggctcacc aactttttca aaagtttttt ttattcaaaa gcaatctgat
    15901 atcaaaccta tcattgataa ccaggaagca atggttgtaa tgaccatccc acaagatttt
    15961 tctcgtaaaa tcgaatcgaa ttcacaagcc aatattcagt taattttgga tggtcgacgt
    16021 tctaatgcaa ctcaaattgt aaatggttat atcagtagta ttattgaaaa ctataatcag
    16081 gaaattcaaa aaacgcatgg tgcaatcatg atgcctcccg tgatggtcac tcgaagttgg
    16141 tttaacgaaa atttgcttta tctttggttt accgtccctt cattgatttg catcttatcc
    16201 atgctgattt ctcttgtggt tactgcttta tcggtagcca gagaaagaga gctgggaacc
    16261 tttgatcaat tattagtatc acctcttact ccctatgaaa ttcttatagg caagactatt
    16321 cccgccatta tcattggttt ggcggaaggt ctcttgatgt gggttgctgc ggtttggcta
    16381 tttgatgttc ctttttatgg ttctccgtta ctgatggttt atattttgtt tatttttatt
    16441 atgtcaacgg taggtgttgg cttatttatt tcttctatgt gtaaaaccca gcagcaagct
    16501 attttgggtg tatttatcta catggtgcct gttgtgacgc tttccggtta cgcttctccg
    16561 gttgaaaaca tgccggaatg gctccaggat ttaacgtggt ttaacccatt aaaatttact
    16621 ttaatagcag taattggcat ttttttaaaa ggtatgtcgg ctttagaggt ttttatcaca
    16681 acatggccac ttctattggt aggggctgtt acattattta ttgctggctg gttttttaag
    16741 cagcgtatgg agtaagaaac agtatggaca gaaaattagt gctactcttc agtatttctt
    16801 gtttatttgg ctgtactgtc ggtcctgatt atcaacgccc ggacattaaa attcaggaga
    16861 aatggccaac aagcaaagta gagaaaaaaa tttccagtag tgcccctgtt catttaacct
    16921 ggtggaaggc atttcatgat ccattgcttg atcgatacat taacgaggca gctactaata
    16981 accttgatat caaagcagca gaagctcgta tccgccaagc ccgcgcaatg caacaaattt
    17041 cccttgccaa tttttatccg cagatcaatg gatcagcaag tgctaattcc ttgcaaatca
    17101 gtaagggtac gttggagggg atttttgcaa actctccaac atatactcta attgatagaa
    17161 atcaatggat atataatttg ggttttgatg cacaatggga gttggattta tttggtaaaa
    17221 caagaagaaa agttgaagca agcaaagcaa gcctggaaga ggcttatgaa tcacgccgta
    17281 ccattttact atctacgata gccgagatcg caagaagtta tatagaattg agaggcgcgc
    17341 aacaattgta tggtattgcg caaaaaaatg tggaattgca aagaaaaacg ttggctcttg
    17401 tccgccaacg ctataaagca ggtgttagca gcgaagtcga tgtttcttta gccgaaggcc
    17461 agttaaaaaa tacagaatct gttttaccca attatattac ccaaatacag gtaaatgctt
    17521 atcaaattgc cgttatgctg ggtaaagatc cgcaaacaat tctcaaagat attgcaaaaa
    17581 ttcaatcttt acccaaacca ccgcaaaaag tacctatggg attacgttca gatattctgc
    17641 gccagcgtcc agacataaga gcaacagaga ggcaattagc gtctgccgta gctgaaattg
    17701 gtgtggcagt tgctgacttt ttcccgcaat ttaatctttc tgtttccaat cttgcttttc
    17761 agagcacttc tgttgatacg ttatttcaat ccagtagtgg attttggctc atgggtcctc
    17821 aagtcagttt acccatattt catggtggcc agattagagc taatgttgag agtaagaagg
    17881 cggttgctca gcaagcagca atacaataca aaaaaataat cctccaggca ttgcaagagg
    17941 ctcaaagtgc tcttgtccgc tatagccaat cgctcgatac aaaccatagc ttgcgcgctg
    18001 ccattattgc taacaagcga gctgtgcaat ttgccaagaa acgatttcaa tacggtgagg
    18061 atgattattt atcactactg caatcagagg ctgctcttct gaatgccgag actcaagaag
    18121 tcaattcgga ggtttcttca ttgactgctt tgattagtct atataaagcg cttggcggag
    18181 gttgggaaaa ctttgaggct taaagtaggc ctaaacatct gtgcatgctc taaaatcagg
    18241 aactttatca ataaattaat gtaataagtt atggataagg taggtcatta tcttgaatcg
    18301 ttcgggctga ggaggcattt atgccgtctc gaagccttgt atggagttta atgtttcgtg
    18361 ccaaggcttc tagacgatgc ttacttatct cctaagccca aacagcccct agatatcgac
    18421 agcttcttat ataatcctta tccattacgt taaattagca aaaatcagac aggtagctcg
    18481 caaacgtaga tctggctata gaacgattta cgtttactac catgaaaata tctcttacaa
    18541 aggtgttaga aacctattca tatcaggctg ttggtttaaa cggtactgat aaacaatata
    18601 aaaggccatt acatttttta gataatttcg tgtttcttgc cagggaagtg tttcaatcca
    18661 gatatctatt tctttgggcg ggtgattttt aagccaatag actacttgtc tgggaccggc
    18721 gttgtaagcg gcagcaacaa gaaccgggtg gttgctgaag cgcttggtta agtgctgtaa
    18781 ataagcaatc cctatattga tattcttttg agataaaaac aattgcttat gatccgaata
    18841 cggtattttg ctggttttgg aaacagcgct ggctgtttgt ggcatgactt gcattagccc
    18901 tttcgcccca gcagaggatg ttacatcttc tctaaaacca ctttcctgac gaataatagc
    18961 atatacaagc tcaggcggta tggcgtattt tgacgcatat acttttattg tgtctttgta
    19021 ggccaatgga aatcttaatg ctaattgatt attgagtgtg tcattattgc ttaagtaaac
    19081 tgattttccg tgccatttta gttcggttgc tatccaatag accagagcac ttgcttcttc
    19141 tttgggtaat tcactaatga agtcatttaa taaccttgat gcttgcagta gctgtttgga
    19201 gttgtaaaaa tttttaactt gttctatgac aggttgatag ggtttgagaa tctctgtgtt
    19261 ggttgttggt ttttcattgt caaagctggg tctttttttc aggcgtttgc tggctagaaa
    19321 accataataa tgtctgtttt tagctagtgg ctcataaatt ttaatcgcct ctgctttttt
    19381 cccttgttct tccagggagc gagccaacca atattgccaa caaggcatct ctttatttgg
    19441 tgagttgtta attaattttt caacttgttt ccagttttta tttttcagag caaagcggat
    19501 ttgccagtcg actaacacat cggtgtagta ttcaggtttg attttggcaa accattcctg
    19561 agcatcggca tgatttctca tggccttgta taatgccaaa tgtgcaagaa aatcttgttt
    19621 ttgccgctca tttaacatga tgttggtttt tttctcttgc catagtttca ctgctttatc
    19681 catgttaatg gatactaatc tttttaatcc ataaagatag aaataatcgt tcaatttgcc
    19741 agggttcaac ttggaaatat tggaaggatt ctcataaaca ctggttaagt tttttatttc
    19801 tgtatcgtga ggtgttttgt attgttttaa caggtaacga gcgagtagaa cattacgttt
    19861 gtctagtgca agtgctatgc gttgcgtaat gaatttctga tcaaagttat cctgctttaa
    19921 cagtaatgca aatagggtat tgcatgcctg gggtcttgat tctcctgata accagattgg
    19981 aatagagcct gctatagcct ccttgtataa tcctaaattg aatttcgcaa tttgcgcaaa
    20041 gcatctgagg tttatgtcgt tggtaggttg ataatactta ttataatctt cccaatcctt
    20101 tatcctggcc agttcatata accatttgtc acgcaattta ttagcaagcg gtgtgttttc
    20161 ttttacaaat tccaaaaatt ctggcgatgg gttaatagga agctgttcat accatgcaag
    20221 atagcgatta aacctgtcca tgtaggcttg tccagataaa gcaaacaagt tgaaagaaca
    20281 gagaagccca cataaaaaaa ttaataattt tttcataatt cctcttaata aggcttgagg
    20341 gcaattattt ggcactttta aatgcttgct aattgttcac gcatatgttt aatggtttca
    20401 ctataattac tgctattgaa tatagcagaa cctgcaacaa attggttagc tccggcatgt
    20461 gctaatgaag caatattctg gggtgtgact ccaccatcaa cacaaagatc gagatttggg
    20521 tgctgttgcc gaattttaga gagcttgggt ataacctccg ggataagttt ttgaccgcca
    20581 aatcctgggt taactgtcat gaccaaaaca aattttagat tatgggcaca ccaggttaat
    20641 gtgtcgattg acgtagctgg gttgagcact aaacccgctt cacatccaag gttattgatt
    20701 agctgcaaac tcctgtctaa atgaatagta gcatctggat gaatactgat acgtttcgca
    20761 cctgctttgg caaatgcttc gattagagta tcaactggag tggtcatcaa atggacatca
    20821 atcggcaaat ttggaaattt tttgattaaa gcgtcacaga aagcggggcc aaaggtcagg
    20881 ttgggtacat aatggttatc catgacatca aaatgaataa aatcagcgcc ggctttcata
    20941 acggcatcta cttcctctcc taaacgggtc atgtccgctg acagtaaaga gggtaaaatt
    21001 tggaatgtca tgatttagta attcaacagt ttgcttttac atataataag ctgactttgg
    21061 taaacattcc agcattacga tttggattca tatcgagttt tattgtttta atcctggatt
    21121 tgagttggag caaatcaaga taataatact ccatcctctc tgattcgtta gagagaggat
    21181 ggtatagaat gcttgatgtt tcgaactatg gagtttaaag attcaattaa ttgtctaatt
    21241 tcaaataaaa tcgtctgatt aaataatcaa ttgataattt ccctggcccg gtacataaaa
    21301 gcattaaaat catgattccc cattgcatgt gatcggtaag accaacggca ccatccggcg
    21361 tccataggaa ttgataagag aaaacggcaa ataagttaaa tagaaaaagt ccaaataaaa
    21421 cgagtctgga tccaagtcct aatgtaatca atacaggaaa gcccagttca caagctgttc
    21481 ccagatacgc agctaaagta ggcgacatga ccggaaccat gtattcgttt tggaataaag
    21541 aaagagtagc ctgccaatta ctgattttgg ttaagccaga tagaaaaaaa acctgggcaa
    21601 gataaaggcg ggttaaaagg ataaaaattg gggcaaggaa atcaaaaatt ttatcagcca
    21661 gcagataggt ttttgctata agtgctttca tatagcctcc agtgaaaaat gattaatcca
    21721 ttgataacga agcgccttgg ttagagtgtc accaattttt tcttcgctaa tccatttact
    21781 taattctgtt accacttttt gccatggtgt ctggtttcca gaggataaga gttccagaaa
    21841 aatatattcc tcctcactaa ttagcataat acaaggtaaa tcattatgct gataaataac
    21901 aactttttca ggacaacctg atatttgtat ttgtttatcc tgctgaaaat agttcatagc
    21961 ccaaatttgg taaataggat attcagaaca gagaattttt aaattgggtg tcagatgaaa
    22021 acataaagac tgaaagctaa tctcatctat gctcgaaaaa gcctcaaaat caaaagggtt
    22081 aacaggggaa agaagcttta aggtgtgcca gtgccactca atagcgcata actgctgcaa
    22141 gtaaggcagc tctttagccg gctcaaaatt cgcaataaat tgaggaaggc tatctccgta
    22201 ctgattaatg tcatattgag tggattcgca attattgata tagcgatgca ataaagcgta
    22261 ccagaagttt tccccgacca aacgcataca gagaggaaaa gttgatttca aatgattaaa
    22321 taaagtagca tggtggcttt ccatgtagac actaatacca tcaaaattgg atcgagcgag
    22381 cctgtttttt aaggggcttg atagtgcctc ctctttgaat tgtgctatcc attccttttg
    22441 aattgtttca agcagagtat tacgcataat gattcatact cctttctgcc acacgcttta
    22501 ttatggcttt tgctttacac atttcgtcat acaggagtga aaaatctggc aagtcattat
    22561 cccactcgat aactgttggc gtgtttataa agagattttg agccttttca taaagttgcc
    22621 aaacgtcttg gtatacttta tcactatgac tatccagcaa atatccctct tgttttgaaa
    22681 atcccccaag atgcatctgc catacgtttt tggtattgat cgaatgaaga tacttatccg
    22741 ggtcatcacc atgattatac caattcacgt ataaattatt gatatccaat aagataccac
    22801 aacctgtagc agtacttaac tcattgagaa actcggcttc agataatgta ttttgtcgat
    22861 aagtgacgta tcttgatacg ttctcgtaca ttattggctg gtttaggtat tcctgaatgc
    22921 agtttgtttt ttcaataatg aatgagaggg tttcttcagt atagggaaac ggtatcaatt
    22981 catgggtaaa aaattgattg gcatgggtcc agcataaatg atctgatatt agcttggagt
    23041 ttaaacaatg agccaaattt tttatttgct gcaaatattg ataatcaggt tcagaggatg
    23101 tggcgataga taagccaacg ctgtgtaaac tcattggata aaactctgca atcttgagca
    23161 actgtttaaa ttgagctccc gattgtttca tgtagttatc agccaggact tcaaaataat
    23221 cgactgtggg ctgttccttt aaaatatcgt cgatgtgttc aagccgcaat ccaatgcctg
    23281 aacatccaga ataaggcgcg gcttgatcgg tagaatgatt tgaatacatt ctaattagct
    23341 tttaactgtg ccgttaacca gcttttcaca agtacctttg ggcagataaa tccagtcagt
    23401 tgttgaacca tctgttttag attgaccagc acaggcatgt tgagctgtac cacaatcatt
    23461 ttttccagct ttggccacac cttggcattt ttccatatca tttggagtat ctgcattagc
    23521 aggtatggta gccattgaaa gtccagcagc catcacggca gccattgtta ttttagaaat
    23581 attattcatg atacctatcc tttgttatat gtaattaatc catatgttat ttaataaacc
    23641 ccttgcctaa ccgggctttt tcattgtatt cctgcatgca aacacagctc ctcaaaatgt
    23701 ttattttttt gctctaaaaa acaatcaggt taggcaagag gtctaataaa ataacgtagt
    23761 tagtatagta ccatttttcg atttgtgaca ggacatcaac ttatttctag aggatggaaa
    23821 aatatttaac atggtttgtt tttattccaa ataggataga aaacatttct tagatctttg
    23881 ccttatactt aataaatcac agcaaaagga agaggagtat tgtatcatgg caaaggatac
    23941 caaaatcatt aatcttgctt tacaaggagg aggtgctcat ggtgctcttg cctggggtat
    24001 tattgacaga cttcttgaag atggtcgtat ccattttgat gccatttctg caacgagtgc
    24061 tggtgctatg aatgctgccg tacttgccta tggatttgca acgggtggaa aggagggggc
    24121 tcgagaagct ctgcatcaat tttggaaaat ggtgagcgat gccgggcaga tatacaaccc
    24181 acttaaaaaa actccgttgg aagaattatt gggcataggg attgaaaatt caatgtcctt
    24241 ttttatgttt gatttgatga ccaaaattct ttctccctat caatttaatc ccttaaattt
    24301 taacccactt aaggaaatat tagagcaaat tgtagatttt gaaaaaatta aatcctgtaa
    24361 aagcattaaa atattcatct cagctactaa tgttcgcaca ggtaaaatta atgtatttga
    24421 taataaaaaa atttctgccg atgcggttat ggcctccgct tgtctgcctt tcatgtttca
    24481 ggcagtaaat attggcgagg attatttttg ggatggtggt tatatgggga atccagctat
    24541 tttccctcta atttataatt ccgagtgcag ggatatttta attcttcata tcaatcctat
    24601 ttatcgagag catgtcccgg atactgcagc cgaaattcta aatcgagtga atgagatcag
    24661 ttttaattct tcattaatgc gtgaaatgcg ggcgatcgct tttgttacta aattgataga
    24721 cagcggttgg attaaggatg aatacaaaaa caacctcagg aaactttatt tacatgccat
    24781 tcgcgcagat gtatcaatgg aatcctcctc agtagccagt aagcttaacc ctgagtggtc
    24841 gtttattagc catctttatg aagaaggacg caaaaaggga gaagaatggc tgaaaagtaa
    24901 ttttaaacat cttggaaaaa tg
//
LOCUS       DACVWI010000028        24626 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.028, whole genome shotgun sequence.
ACCESSION   DACVWI010000028 DACVWI010000000
VERSION     DACVWI010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 24626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24626
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.028"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(48..962)
                     /locus_tag="JBH85_04305"
     CDS             complement(48..962)
                     /locus_tag="JBH85_04305"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HAU0945416.1"
                     /translation="MIKQRTPKKVIQATGVGLHSGEKVLLTLRPAPVNTGIVFRRVDL
                     SPVVEIPASYEYVGDTMLCTTLHHGKVKIATVEHLLSALAGLGIDNAYIDVNAPEIPI
                     MDGSAAPFVFLIQSAGIREQNAAKRYIRILKPIRVEENGKYVQFLPHKGYKITFTIGF
                     EHPVFNDRPQTVSFDFSGTSYVKEVCRARTFGFLSDYEKLRECDLAKGGSLDNAIVVD
                     DYRVLNEDGLRFESEFVTHKVLDAIGDLYLLGSSLIGAFEGYKSGHELNNRLLRELMV
                     RQDAWEYTYFDTENYLPAVHPEYYPVEA"
     gene            complement(1210..2406)
                     /gene="ftsZ"
                     /locus_tag="JBH85_04310"
     CDS             complement(1210..2406)
                     /gene="ftsZ"
                     /locus_tag="JBH85_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HAU0945417.1"
                     /translation="MFELMESSQQENNAVIKVVGVGGGGGNAVEHMVAENIDGVEFIC
                     ANTDAQALRGSSAKIHIQLGDALTKGLGAGANPQIGREAAEEDREHIKEILSGADMVF
                     ITAGMGGGTGTGAAPVFAEIAKELGILTVAVVTKPFSFEGKQRALAAEEGIRRLAEHV
                     DSLITIPNNKLLSVLGKNISLLNAFKAANNVLLGAVKGISDLITRPGLINVDFADVRT
                     VMSEMGMAMMGTGSAVGEQRARQAAEAAIASPLLEDVNFSGARGILVNITAGLDMSIG
                     EFEEVGDVVKEFISDDATVVVGTVIDPEMTDEMRVTVIVTGLGDNRQRQQQPQQPLRA
                     RLVETTRSDGSLDYQQLERPAVIRKQAQTGTATTATKQTNNGNESVPDVDYLDIPAFL
                     RRQEEA"
     gene            complement(2601..3839)
                     /gene="ftsA"
                     /locus_tag="JBH85_04315"
     CDS             complement(2601..3839)
                     /gene="ftsA"
                     /locus_tag="JBH85_04315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019350161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HAU0945418.1"
                     /translation="MAKKIEKNIITGLDIGTSKIIALIGEVTSDGTIEIIGIGRHPSR
                     GLKRGVVVDIETTVNSIQRAVQEAELMAGCEVRTVYAGIAGSHIRSLNSHGIVAIRDQ
                     EVSQADVERVIDAAKAVAIPADQKILHILPQEFIIDHQGSIREPIGMAGVRLESRVHI
                     VTGSVSAAQNIVKCVRRCGLDVIDIILEQLASSHAVLTEDEKELGVCLIDIGGGTTDI
                     AIFCEGAIQHTSVIPIAGDQVTNDIAMALRTPTKAAEAIKVNHACALPELANPNQMLE
                     VTSVNDRPGRKISAKALADVVSARYEELFSLVRNELRRSGFEDRLAAGIVLTGGASNV
                     RGAIELAELCFEMPVRKGCAHYVSGLTEATENPSFATGVGLLLHGFQQQYESGYNVPA
                     MNDNGKSIWSRMKEWFQGNF"
     gene            complement(3839..4558)
                     /locus_tag="JBH85_04320"
     CDS             complement(3839..4558)
                     /locus_tag="JBH85_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HAU0945419.1"
                     /translation="MEVNSVGLRYLTIMGLLILSALLLAGRLGYLYLADAERFPITTI
                     KVAATYEHITHKELENVLAKYLDASFFLLSVKGLQSELNSMSWIDTAYVERVWPDTLK
                     IKLTEKKPVAIWGDALMTRDGKLFNQGSVPSDLDIPKLKGPQSQQLEVLQVYEKLSKI
                     LSSYGLNASGLYLRDNQSWVLLLNHSVKIYLGKKELEERLLRFCKAYPAVFAEKADQL
                     AGVDLRYPRGMAVQWKQQMGR"
     gene            complement(4574..5680)
                     /locus_tag="JBH85_04325"
     CDS             complement(4574..5680)
                     /locus_tag="JBH85_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HAU0945420.1"
                     /translation="METLMSKPVNLVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHII
                     PIAMDKSGRFHRHDYNDLLACSDKLPVVTEKSTPLEGLLINGRLAVDAKIVFPVVHGP
                     LYEDGCLQGLLELAGVAYVGCDVLSSAIGMDKDMARRLACINGLKSARYKLLSWHANA
                     SERQQFCHEVASEFGWPLFVKPCSLGSSVGIHKANNMDELNAAVADALRYDEEILVEE
                     FIVGREIELAVLENSIPCGKPRVSMVGEIKVNHPDGYYSYTAKYLESSQTDLIIPAQL
                     NNSLEEQLKQAAANIFSYLKCKGMARVDFFVNDKTEEIYFNEINTLPGFTSISMYPKL
                     WQATGIAYPDLLDELINLAMVHHNCRQHLVTNYL"
     gene            complement(5652..6590)
                     /gene="murB"
                     /locus_tag="JBH85_04330"
     CDS             complement(5652..6590)
                     /gene="murB"
                     /locus_tag="JBH85_04330"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HAU0945421.1"
                     /translation="MRMNMSITGMDSSHVTESQGTLLFNEPLAEYTTWRVGGPAARLY
                     KPANIDDLALFLSRLPFDEPLLWLGLGSNSLIRDGGFSGTVILTQGCLKEMTLLSDNC
                     IRVEAGVSCASMARFSARNNLSGGEFWAGIPGTMGGALRMNAGCHGGETWQSVIEVQT
                     INRRGEIRTRKPEEFEVAYRHVAGLGDEWFISAKLQLSPGNKETSLQLIKDLLAHRAK
                     TQPTNEYNCGSVFRNPPGDFAARLIESCGLKGVSIGGAVVSEKHANFIINHQGTATAA
                     NIEALIHLVQTKVREQTSIELIREVHIIGDANVQTR"
     gene            complement(6587..7996)
                     /locus_tag="JBH85_04335"
     CDS             complement(6587..7996)
                     /locus_tag="JBH85_04335"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HAU0945422.1"
                     /translation="MNNSEQFLSPRMGRVEQIHFVGIGGAGMCGIAEVLHNQGYRITG
                     SDLGESGTVQRLRSLGIQVYIGHRLENIKGADVVVRSSAVDFNNPEIVAARELMIPVI
                     PRAAMLAELMRFRHGIAIAGTHGKTTTTSLVSSLLAEGGLDPSFVIGGKLNSCGANAQ
                     LGKSAYFVVEADESDASFLFLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLP
                     FYGLAVVCLEDEEICRILPAIQRPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPH
                     KQLTIQFQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFE
                     KGAAIIVDDYGHHPQEILSTIDAFRRVWPERRLVHVFQPHRYTRTQSLHRQFVDVLSL
                     SDELLLMDIYAAGETAIPGVTSENLANEIRSRDKRVTIVSEQSLKATLDEFIKDGDVI
                     LMQGAGSIGQIAVNLMKNM"
     gene            complement(8006..9190)
                     /gene="ftsW"
                     /locus_tag="JBH85_04340"
     CDS             complement(8006..9190)
                     /gene="ftsW"
                     /locus_tag="JBH85_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HAU0945423.1"
                     /translation="MNTMRPRHLNQRGKPVSRPISLYDKWLIGAVFGLLIIGLMMVAS
                     SSVMISTKYFHQPFHFLIRQACYLFVGLLLALIVVRTDSSFWEKISMPMMIGCVFLLL
                     IVLIPGIGKSVNGSRRWLALGPIGVQVSELTKLAMIFYLSGYLVRQQEAVCESIFGFI
                     KPMAILAVVSVLLLLEPDFGATVVISGTVMAMLFLAGVKLRYYFGLMLVVVTALALLA
                     VSSPYRVARLTAFLDPWADQYNSGYQLTQSLIAFGRGGWFGTGLGESIQKLLYLPEAH
                     TDFLFAVIAEELGLFGILVVITLYSILVIRGLNIGYTAYTQERHFASYTAYGLTIWLA
                     LQASINMGVNAGLLPTKGLTLPLLSYGGASMVINCIVIALLLRIDHENRWQSLGLRPL
                     TA"
     gene            complement(9187..10530)
                     /locus_tag="JBH85_04345"
     CDS             complement(9187..10530)
                     /locus_tag="JBH85_04345"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HAU0945424.1"
                     /translation="MNHSLYLVAGLGKTGLSIARYLKRNNKSFVVFDTRKEAPGLAEF
                     QNEFPDVPIYLQQTPDEVISQVTDVITSPGLALDTPVLERARQAGASIYGDIECLARE
                     ISAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPVLDMLDDEHHYDLWVLE
                     LSSFQLDLTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRGAKAVLFNREDVY
                     TVPHQSCQADIKCISFGKDAPSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNW
                     MNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVGWINDSKGTNIGATI
                     SAINGIGGSMQGKIVLIAGGQGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKV
                     VPVVRASSLEGAVTIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVFTSSVRGL"
     gene            complement(10544..11629)
                     /locus_tag="JBH85_04350"
     CDS             complement(10544..11629)
                     /locus_tag="JBH85_04350"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HAU0945425.1"
                     /translation="MLYWLTQLLQGQYHAFRVFQYLTFRSILASLTALIVGLLCGPLM
                     IRWLRGLQIGQMVRSDGPQTHLSKAGTPTMGGVLILLAITVSCLLWCDLRQTSLWLVL
                     LVTLANGLVGWVDDYRKLVLKNSKGLPGRWKYFWQSVIALVAVSYLYWNASLPVHTQL
                     TVPFFKTVTWDLGVFFPVLAYFVIVGSSNAVNLTDGLDGLAIMPIVMVAGALGVFAYA
                     SSNAVYSNYLGIPYVPNTGELTIFCSSIVGAGLGFLWYNSYPAQVFMGDVGSLALGAA
                     LGIVAVVVRQELVLLIMGGLFVIETLSVILQVGYFKYSGGKRLFRMAPLHHHFELKGW
                     SEPKVIVRFWIITVVFVLCGLATLKLR"
     gene            complement(11744..13129)
                     /locus_tag="JBH85_04355"
     CDS             complement(11744..13129)
                     /locus_tag="JBH85_04355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HAU0945426.1"
                     /translation="MSLSVSTLVFSTSQNTMNLITIASLLSQSCQINADITGVSIDTR
                     TLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRSIDGVHIPQFVVASPLMALAK
                     IAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQPSHATKGNLNNHIGVPLSMLALN
                     KQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQ
                     GLSPTGVAIVNDDDAYAHFWDDLIADKKILRFSSLHPADIYAQDIRLDTHGRAHFTLV
                     LPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKGRMTMLSGQ
                     NQSTVIDDTYNANLRSVLTALEVLSGRPGRKIFVFGDMGELGEWTTQHHREVGVAARQ
                     LGIDKLMSCGLHSELASQAFGEGGQHFCSQEELIEVVKNDLTPDTTVLVKGSRSSAME
                     NVVHRLVQVEG"
     gene            complement(13322..14101)
                     /locus_tag="JBH85_04360"
     CDS             complement(13322..14101)
                     /locus_tag="JBH85_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HAU0945427.1"
                     /translation="MQANWSLILNVLLLIGVLVAIGRLMKTRRQSLNQEHYQPSLGQV
                     ENNSYGSQSYNDEIIAVRKVNREVPLDFENFDGSEKRQAIRKPSVKTEQPQLIPEEEE
                     CELNERTEPNSDCSSSTAMVFLLAKENRQFAGYELLQTVLAAGLRFGERHLFHRHQFT
                     NGQGPVLCSLAAATATGVFDLQNIGAFSVRGLCLFMQISNNPEINAERFSVMLDTAKQ
                     LSEGLDAYLLDDQRKPLTEERIARYHRYLKIEHLMDDCVTN"
     gene            complement(14106..17600)
                     /gene="smc"
                     /locus_tag="JBH85_04365"
     CDS             complement(14106..17600)
                     /gene="smc"
                     /locus_tag="JBH85_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HAU0945428.1"
                     /translation="MHLKQLKLAGFKSFVDPTTVHFPSRLVAVVGPNGCGKSNIIDAV
                     RWVMGESSAKNLRGESMTDIIFNGSSNRKPVGQASVELVFDNSLGRLTGPFASYGEIA
                     VKRIVTRDGESFYYLNGARCRRKDITDIFLGTGAGARSYSIIGQGTVSRLIEAKPEEL
                     RVYLEEAAGVSKYKERRRETLQRIEQTRDNLTRVADIREELGKYLQRLERQAKAAERY
                     TILKEEEKICRAEIQALKWQEYSEKQTVKQRELQELAIRNEQQQSLLTSCYKERAVLN
                     EQLQDAIDQSQSIQDSLYHSGTDIARLEEAIQQQEREKKRLENDRQQMQVDSQLIEEQ
                     LKLDNEELHNCKLKAQQLEEHLHHLKMEFKEQESLWQEKQKEQSQWEKIWQEVQINSN
                     TIKNEYQLTQAKLQHLEQKRHQVLVRLEKLNLEQSAISLDDLQKNKIELQEKHFQLKE
                     TQEFDEEQLRQANETQSDLQNQLQNTEQQLHTLQDEFHRLNTELAALKAAQIAAKKEN
                     RPNKDGIAEWSDKPRLMDVLKVEPQWQSSCEIVLGDDLIAYVLDDFAELWSRWQFCED
                     HKENVVTMRALNGEKQERPRLADKIQGLVPSTVNHLEHIYAADSLEEAKTWFPDLLAH
                     ESIVTVNGIWLGKGWIKLPRQKEQDEVGVLARQQRIIELNLSVESLQQKIESIRLARD
                     SYQARLQENLNFIKLHQLNLNTSNEALRNHIIAVNSQEQAIFHAEKQKDAITNEIIEL
                     ESSLEELNAEQLEMADKIRELEGQYQASELQFKRFINEKDTWNSVLVEQNKQVESVRA
                     LLHQSELEYDREVTKIQQITDRISREKERLQRAQMRLEELTQHYLQSVAPEAEFKNQL
                     AALLIKHGEIELMLTLSREKVSQLKLQLEDQEKLILNYDQEVKRIQELMNQIQMEKQA
                     LSVRASSIQETLDEANLQAQSLLERIPSGVTQSIKEDELIAILEKIKRLGAINLAAIE
                     EFAAEQQRKVFLDEQYNDLSQALSTLETAIEKMDNETKSRLENTFDEVNTSFKALFPR
                     LFGGGRAQLELTCDNLLEAGIVVMAQPPGKRNSSIHLLSGGEKAMTAVALVFAIFQLN
                     PSPFCMLDEVDAPLDDLNVSRFCDLVKEMSQFIQFLFITHNKVTMELAEHLVGVTMRE
                     PGVSRLVAVDVKQALTME"
     gene            17775..18455
                     /locus_tag="JBH85_04370"
     CDS             17775..18455
                     /locus_tag="JBH85_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase"
                     /protein_id="HAU0945429.1"
                     /translation="MKQQFYKLPQILISLCLLLILSTPIQAEPPNLSLIRKEIKNYYD
                     SGLYYHELERTIKLAQEYIHQQYLINKNNKHPQKLAIVLDIDETSLSNYDKMVKRDFT
                     GSKEQIHKEILAANSPAIKPMLTLYKNALKQGIKVFFVTGRQESERDATRANLIKAGY
                     TKWAGLYLRPNGYSSPSIIPFKSKAREMIAKKGYTIIASIGDQCSDIQGGYTKKGFKL
                     PNPFYYLP"
     gene            complement(18557..19618)
                     /locus_tag="JBH85_04375"
     CDS             complement(18557..19618)
                     /locus_tag="JBH85_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C1 family peptidase"
                     /protein_id="HAU0945430.1"
                     /translation="MSKLINLAVLSFSSSLAFAGPLTLKGEVDVHITPKNPSGVAQSL
                     TFKLPKYELSTEAKSYLREQLSEYPKNSINTASFSSELPRKVKLGMQLTPVLDQGYHG
                     SCVTFAVTAAIDAALGAGDYISQLCNLELGSYLAIHDKAKASGWNGSFGYWVLQQISE
                     YGIISQNYQKLNGCAGVREYPLEDENNEGKPMSDSEFLAHSVPVSNLISWEALLKDEE
                     SFSAKADMNQIVYQIKEELAKGNRLTIGMLLDVFVGDAGAVGTNRAYNDTWMLTPEIV
                     LDAMNGMIYAGHELVITGYDDDLEVMDEEGHVNKGVFTLRNSWSKFAGDQGDYYVTYD
                     YVKFLAMEVMAIRMKEKAA"
     gene            19928..20740
                     /locus_tag="JBH85_04380"
     CDS             19928..20740
                     /locus_tag="JBH85_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tim44 domain-containing protein"
                     /protein_id="HAU0945431.1"
                     /translation="MRTLLSCFLITLLSFGLIINEASAKRFGGGRSFGVQRSQSSLFS
                     SNKTHNTSSLTQKANKSRWGGVLGGLLVGGLLASLFMGNGLANGLITWLILGSVIFFI
                     ISFLRRKMNPGFQATQSGAFRQNSFEQFTQNYGNRNSGGAHFAQQETSFDADNFLRDA
                     KITFIRLQAAYDQKNLQDLQTFTVPEVFAEIKMQLDERGDAPNQTEVISLDAKLLDVS
                     KQSLSMIASVQFTGTIKENGEISNLDEIWHFRQFDNRKEWVVGGIQQEVFQP"
     gene            complement(20815..21297)
                     /gene="greA"
                     /locus_tag="JBH85_04385"
     CDS             complement(20815..21297)
                     /gene="greA"
                     /locus_tag="JBH85_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HAU0945432.1"
                     /translation="MSKHPMTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKE
                     NAEYHAAREQQSFNEGRIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSE
                     LTYKIVGEDEADIKLNKISYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYIVE
                     "
     gene            complement(21306..24509)
                     /gene="carB"
                     /locus_tag="JBH85_04390"
     CDS             complement(21306..24509)
                     /gene="carB"
                     /locus_tag="JBH85_04390"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HAU0945433.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGTQAVRALKEEGYRV
                     ILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLPTMGGQTALNCALDL
                     VREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAIAHSLEEAIQVQA
                     RLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTHELLIDESVLGWKEYEM
                     EVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAAIKVLRAVG
                     VDTGGSNVQFAINPEDGRMLVVEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LKNEITGGKTPASFEPSIDYVVTKVPRFNFDKFPQTPDTLTTQMKSVGEVMAIGSNFQ
                     ESLQKAIRGLEIGRCGLHSLFQKEDMARLRGHLREPTPDRLWYIADAFRQNLSLEEIH
                     LESRVDPWFLAQIQELVLLERSIIGKTIRDLDKTALHLMKHRGFADAYLAKLLGCTEA
                     EVRARRVELEILPVYKRIDSCAGEFPSDTAYMYSCYEGSCEARPESNKKKIMILGGGP
                     NRIGQGIEFDYCCVHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVL
                     SIVAMEQPEGVIVHYGGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKEL
                     KLHQPDNGTVRSEAEAIELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVE
                     VSNDSPVLLDKFLNDAIEVDIDAVCDGKDVLIGAIMEHIEQAGIHSGDSACTLPPFSL
                     GVVVQQDLIEQIRKMALKLGVVGLINAQFAIQADDIYVLEVNPRASRTVPFVSKATGL
                     PLAKIAALCKVGISLKDQGLNQNHHTPSFYSIKLPVFPFIKFSGVDSILGPEMKSTGE
                     VMGIAKRFGQAYAKAQLGAGCHIAKRRRAFVSVRDADKTRVGEIAKRLIELGFEIIAT
                     RGTALALQAAGVDCRRVFKVAEGRPHVLDFIKNNEIDFIVNTTEGKQAIADSFAIRRN
                     ALQHKVSYTTTLSGAEAACLAMKYEDRETVTRLQDLH"
BASE COUNT         7359 a         5862 c         4239 g         7166 t
ORIGIN      
        1 aatagtgaaa atgaatattc tcactacgtg gatatgatgt atttctgtca ggcttcaaca
       61 ggataatatt cagggtgaac cgcgggcaga taattttctg tatcaaaata ggtatattcc
      121 caagcatcct gccttaccat taattcacgc aacaatctgt tgtttaattc gtgaccagat
      181 ttatatcctt caaatgcgcc aattaaactg gaacccaata aataaagatc accgatagca
      241 tctaatactt tatgagtaac aaattctgat tcgaagcgga gaccatcttc attaaggaca
      301 cgataatcat ctactacaat agcattatct agactaccgc cttttgccag gtcgcactct
      361 ctcaattttt cataatctga aagaaaacca aaagttctcg ccctacaaac ttctttgaca
      421 tacgatgttc cagaaaaatc aaagcttact gtttgtggtc tatcattaaa aaccgggtgc
      481 tcaaaaccta tggtaaatgt tattttatat cctttatgag gaaggaactg aacatacttt
      541 ccattttctt cgactcgtat aggtttaaga attcggatat atctttttgc tgcattttgc
      601 tctcttatac ccgctgattg aattaaaaat acaaatgggg cggcacttcc atccataatt
      661 ggaatctctg gggcattgac atctatatag gcgttatcaa ttcctaaccc ggccagggcg
      721 gataataaat gctccaccgt tgcaattttc accttgccat gatgaagggt ggtgcaaagc
      781 atggtatctc cgacgtattc gtaggaggca ggtatttcga caactggtga caaatcgacg
      841 cgtctaaaaa cgatacctgt gtttacagga gctggtctta aggttaaaag cactttctca
      901 ccggaatgta atccaacacc agtagcctgg attacctttt taggagttct ttgttttatc
      961 attcagtgct cacctttctc tcttatattt attttgcacg caaaaacctt aagatcttag
     1021 caacaattta ttgattagtc taattttttt aatttcaatt aatgcggttt tggaaaccaa
     1081 atacaaaaat tgcaaaaaat aaccacacga atcaattcat gagatactca agaaagaacg
     1141 tttgtatcca tcaaatacat ccttgttttc aaacacatcc tctctcaaga tatcccgtta
     1201 aaaatgcttc tatgcttctt cttgcctacg taaaaacgcc ggtatgtcca ggtaatccac
     1261 atcaggaaca ctctcattac cattattagt ttgctttgta gctgttgttg cagtaccagt
     1321 ctgagcctgc ttacgaatca ccgccggtct ctccaattgt tgataatcaa gagacccatc
     1381 gcttcttgtc gtttcaacca ggcgtgctct aagaggttgt tgtggctgtt gctgacgctg
     1441 tctattatca cctaaaccag tcacaatcac agttactctc atctcgtcag tcatttcagg
     1501 atcaataaca gttccaacaa ctacagtggc atcatcagaa atgaattctt taaccacgtc
     1561 acccacttct tcaaattcac caatagacat atcaaggcct gcggtgatat tcactaagat
     1621 tccgcgagcg ccggagaaat tcacatcctc caataaagga gatgcaatcg ctgcttcggc
     1681 cgcttgacgt gccctttgct caccaactgc gcttcctgtt cccatcatgg ccattcccat
     1741 ttctgacatc accgtacgca catccgcaaa atcaacgttg atcaaaccag ggcgggtaat
     1801 taaatcagaa atacctttca cagcaccaag caacacatta tttgcagctt tgaacgcatt
     1861 gagcaaacta atattttttc ctaaaacact taataattta ttattaggaa tagtaattaa
     1921 cgaatccacg tgctcagcca agcgtcgaat accttcctca gcagcaagcg ccctttgttt
     1981 tccttcaaaa gaaaatggtt tagttaccac agcgaccgtt aaaataccta attccttagc
     2041 aatttcagca aaaacaggcg cagctcctgt ccctgttcct ccgcccattc cggctgtaat
     2101 aaagaccata tctgcaccac taagaatctc tttaatgtgc tctctgtctt cttctgctgc
     2161 ttctcttcca atttgtggat tagcacctgc ccccaagccc ttggtcaatg catcacccaa
     2221 ttgaatgtgt attttggcac tggaacctct taaagcttgt gcatcggtat tcgcacaaat
     2281 aaattccaca ccatcaatat tttcagcgac catatgttcg acagcgttac caccgccacc
     2341 accaacacct acaaccttga tgacagcatt attttcttgc tggctgcttt ccattaattc
     2401 aaacataacc ctgtctcccc taatgtgctg cttttttctt attaaataaa ttaaacagtt
     2461 ttgaacttat cgcatttgac actttacaag acaaaaatct gcatttgttg tcatgcaaaa
     2521 tatcatgcaa ccccatatct caatttctat ccataccagg aacattttta agcatcatat
     2581 cagtgttttt acatgaaaag ctaaaaattt ccttgaaacc attctttcat gcgtgaccaa
     2641 atgcttttac cattatcatt cattgctggc acattatagc cactttcata ttgctgttga
     2701 aagccatgaa gcagtaaacc aacccctgtt gcaaacgaag gattttctgt cgcttctgtc
     2761 aaaccggaga cataatgcgc acatcctttt ctgactggca tttcaaaaca aagttcggcc
     2821 aactcaattg ctcctcttac attggaagct ccacctgtta gaacaatacc agcagccaaa
     2881 cggtcttcaa acccgcttcg gcgtaattca ttacgtacca gtgaaaatag ttcctcatat
     2941 cgagctgaaa cgacatctgc caaagctttg gccgagattt ttcgcccagg tctatcattg
     3001 acactggtaa cttctaacat ttggtttgga ttggctaatt ctggtaatgc acaagcatga
     3061 ttgaccttaa ttgcttctgc cgccttggtt ggcgtacgca aggccattgc aatatcattt
     3121 gtcacttgat cgcctgcaat cggtatgact gaggtatgct ggatagctcc ctcacaaaat
     3181 atcgcaatgt cagtagtgcc gccacctatg tcaattaaac aaaccccaag ctctttttca
     3241 tcctcagtaa gaacagcatg gcttgaagct aattgctcca gaataatatc aatcacatcc
     3301 aaaccacagc gcctgacaca cttcacaata ttttgggcag cactgacaga accagtaaca
     3361 atatgaaccc gagattccag ccttacacca gccataccta tcggttcacg aatactgcct
     3421 tgatgatcaa tgataaattc ttgcggtaat atatgaagta ttttttgatc agcagggatt
     3481 gccacggcct ttgctgcatc gataaccctt tccacatcgg cttgagatac ttcctgatca
     3541 cggatggcca caataccatg ggaattaagg ctacgtatat ggctgccagc aatgcctgcg
     3601 taaacagtcc tcacctcaca accagccatt aattcggctt cttgtacagc acgttggatt
     3661 gaattgactg tggtttctat atcaactaca actcctcgct ttaatccgcg agagggatga
     3721 cggccaatac ctataatttc tatcgttcca tctgatgtta cttcaccaat taatgcaata
     3781 atttttgaag ttccaatatc caaccctgtg ataatatttt tttctatttt tttagccatt
     3841 atcgtcccat ttgttgtttc cactgcactg ccatgccacg tggataacgc aggtccacgc
     3901 cagccaactg atctgctttt tcagcaaaaa cagcagggta tgctttacaa aaacgcagca
     3961 accgctcttc taactctttc tttcccaagt atatttttac actatgatta agcagcaaca
     4021 cccaggattg attatctctt aaatacaagc ctgaagcatt taaaccgtat gatgataata
     4081 tcttactcaa tttttcataa acttgtaaga cttctaattg ctgagattgc ggacccttta
     4141 atttgggaat atccaaatca gatggaacag aaccctgatt gaacaacttt ccatcccttg
     4201 tcattagagc atcaccccaa atcgctacag gctttttttc agtgagttta attttcaatg
     4261 tatctggcca aactctttct acataggcag tatcaatcca actcattgaa ttcaattcac
     4321 tttgcaatcc ttttactgat aataaaaaga aactggcatc cagatattta gctaacacat
     4381 tctccaattc tttatgtgtt atatgttcat acgtcgctgc aactttgatc gttgtaattg
     4441 gaaaacgctc tgcatcagca agatataaat agcctaagcg acccgctagc agcaaagcac
     4501 taagaattaa caaacccatt atcgttaaat aacgcaagcc gacagagttc acttccataa
     4561 tttagtgttc ccttcacaag taatttgtca ccaaatgttg acgacagtta tgatgaacca
     4621 ttgctagatt aatcaattca tcaagtaaat caggataagc tataccagtt gcctgccaca
     4681 atttggggta catacttatg gaggtaaatc caggtaatgt atttatttca ttaaagtaaa
     4741 tttcttctgt cttatcattt acaaaaaaat ctaccctggc catgccttta catttaagat
     4801 aactaaaaat attcgctgca gcctgtttta attgttcttc cagactatta tttaattgag
     4861 ctggaataat caaatccgtt tgactgcttt ccaaatattt cgcagtataa gaataataac
     4921 cgtcagggtg gtttactttt atctcaccca ccatacttac tcttggtttc ccacagggga
     4981 tactgttctc caacactgcc agttcaattt cccttccgac aataaattct tcaaccagaa
     5041 tttcttcatc atagcgtaat gcatcagcaa ctgctgcgtt tagctcatcc atattatttg
     5101 ctttgtgaat tcccacactg gaacctagtg agcatggctt aacgaacaga ggccaaccaa
     5161 actccgaggc gacttcatga caaaattgtt gtctttcaga cgcattggca tgccatgata
     5221 ataatttata tcttgctgat ttgagcccat taatacatgc gagtcgcctc gccatgtctt
     5281 tgtccattcc gattgcagaa gacaatacgt cacatcctac ataggcgaca ccggctaact
     5341 caagtaaacc ttgtaaacat ccatcctcat ataaagggcc atgaaccact ggaaaaacaa
     5401 ttttagcatc aactgccaga cgtccattaa ttaataagcc ttccaatggg gttgattttt
     5461 cagtaacaac aggtaattta tcagaacagg cgagcaaatc attataatca tgacgatgaa
     5521 atcgaccact tttatccatt gcaatgggta taatatgata tttctcggaa tccaggtgtt
     5581 ttagaaccga tgcggcagaa accaatgaca cttcatgctc gcctgatttt ccaccataaa
     5641 gtaaaaccaa attaacgggt ttggacatta gcgtctccaa tgatatgtac ttcgcgtatc
     5701 aactctatag atgtttgctc tcgaacttta gtttgcacca aatgaatcaa ggcttcaata
     5761 ttagctgccg tggcagtacc ttgatgattg ataataaaat tggcatgttt ttcagaaaca
     5821 actgccccac caatgcttac ccccttgagg ccacaagatt caataagtcg cgctgcaaaa
     5881 tctccaggag ggtttctaaa taccgaccca caattatatt cattagttgg ttgggtcttg
     5941 gctctatgag ccaataaatc cttaattaat tgcaaggatg tctctttatt acctggtgat
     6001 agctgaagct ttgcggaaat aaaccattca tctcccaagc cagcaacatg tcgataagcc
     6061 acttcaaatt cttccggttt acgggttctg atttcacctc gacgatttat cgtttgtact
     6121 tcaataaccg actgccaggt ttcacctcca tgacaaccgg cattcattcg cagagcacca
     6181 cccatggtac cggggatacc agcccaaaac tctcctcctg acagattatt acgcgcagaa
     6241 aaacgagcca tactggcaca ggatacccct gcctcaaccc gaatacagtt atcgctcaat
     6301 agggtcattt cttttaaaca gccctgagtg agaatcacgg taccggaaaa accgccatcg
     6361 cgaattagag aattagagcc taaacctaac cataataatg gctcatcaaa aggcaatcga
     6421 cttaaaaaca aagccaaatc atctatattt gctggtttat aaagcctcgc tgcagggcca
     6481 ccaactcgcc aggtagtata ctcagccaaa ggctcattga aaagcaaagt gccctgagac
     6541 tctgttacat gactgctgtc cattcccgtt atgctcatgt tcattctcac atgtttttca
     6601 tcaggttcac tgctatttgg ccgatacttc cagctccctg catcaaaata acgtcaccat
     6661 ctttaataaa ttcatctaag gtggctttca acgattgctc gctcactatg gtcactcgtt
     6721 tatccctgga tcgtatttca ttggccagat tttcactggt aacgcctgga atagctgttt
     6781 ctcccgctgc atagatatcc atcaataaca gctcatccga taaacttaaa acatcgacaa
     6841 attgtctatg caaggactgt gttctggtat aacgatgggg ttgaaagaca tgaaccaaac
     6901 gtctctcggg ccaaacacgt ctaaaagcat caattgtgga taaaatttcc tgtggatgat
     6961 gtccataatc atccacaata atcgccgcgc ctttttcgaa ctgtttttca ccaagcattt
     7021 gaaagcggcg tcccacccct tggaattttt gtaagccacg aacaatggaa tcgtcatcaa
     7081 ctcccaactc agtggcaatt gctatagaag ctaatgcatt taatacattg tgacggcctg
     7141 gatactgaaa ttgtatagtc agttgtttat gtggtgcagg tcgaacgacc acaaactcac
     7201 tcagcatgcc cttttgagtc caattaattg cccgataatg agcctcttct ttaaacccat
     7261 aagttaaggt tggtctttga atagccggga ggatacggca aatttcttca tcttccaaac
     7321 aaactactgc taatccataa aaaggcaaat gatgcaaaaa ttccaaaaat gttgttctta
     7381 atttttcaaa atcaccttca taagtatcca tgtgatcagc atcaatatta gtcactaccg
     7441 ccatcatagg cttcaaaaac aaaaacgagg cgtcgctctc atcagcctct acaacaaaat
     7501 aagctgactt tccaagctga gcattcgcac cacaactatt cagctttccg ccaataacaa
     7561 aactgggatc caaaccacct tcagcaagca aactactgac caagctcgtt gttgtcgttt
     7621 tgccatgagt gccggcaatt gctataccat gcctaaatcg cattagctca gcaagcatag
     7681 ctgctctagg aataactgga atcattaact cacgagcagc cacaatttca ggattattaa
     7741 aatcaacggc cgaagacctt actacaacat cagcgccttt aatgttttcc agcctgtgac
     7801 cgatatagac ttgaatacct aatgacctta agcgttgtac cgtgccactt tctccgagat
     7861 ccgaaccagt aatacggtag ccctggttat gcaatacttc ggcaatacca cacataccag
     7921 caccaccaat gccaacaaaa tgaatttgct ctacacgccc catgcgcgga gataaaaatt
     7981 gctctgagtt attcaatatt cccccttaag ccgttagcgg tctcaaccca agagactgcc
     8041 aacgattttc atgatctatg cgcaataata gtgcaataac gatacaatta attaccatac
     8101 tggccccacc ataactgagt aaaggcagag ttagcccttt ggttggtaac agtccggcat
     8161 taacacccat attaatagaa gcctgtaaag ctaaccaaat agtcaaacca taggctgtat
     8221 aggatgcaaa atgcctttct tgagtatagg cggtatatcc tatgtttaat cctctaataa
     8281 ccagtatact atacaatgtg atgacaacta aaattccaaa taaccctaat tcttcagcaa
     8341 tcacagcaaa taaaaaatca gtatgtgcct caggtaaata gagtaatttc tgtatgcttt
     8401 cacctaatcc ggtaccaaac catccacctc gtccgaaagc aatcaatgac tgagtcaatt
     8461 gataaccact attgtattga tctgcccacg gatccaaaaa ggctgttaag cgagcaaccc
     8521 tataggggga agataccgcc aacagagcaa gtgctgtcac tacaaccagc attaaaccaa
     8581 aatagtatct taatttaact ccagctaaaa ataacatagc cattactgta ccagaaatga
     8641 caactgtcgc tccaaaatct ggttcgagca gtaataaaac tgaaacaaca gccagtattg
     8701 ccatgggctt aatgaatcca aaaatgcttt cacaaaccgc ctcttgctgg cgaaccaaat
     8761 acccggaaag atagaatatc attgcaagtt tcgttaattc tgagacttgc acaccaatcg
     8821 gacctaaagc taaccaacgt cgactgccat tcactgattt accaataccc gggattaaaa
     8881 caatgagcaa taaaaacacg caaccaatca tcatgggcat gcttattttt tcccagaaac
     8941 tgctgtctgt acgcaccaca attaaggcca gcaagagtcc cacaaataaa taacaagcct
     9001 ggcgaataag aaaatgaaaa ggttgatgaa agtactttgt tgaaatcata accgagcttg
     9061 atgccaccat catcaaacca attatcagca aaccaaaaac tgcccctatc agccatttat
     9121 cataaagtga tatcggcctg ctaacgggtt tgcctctttg atttaaatgt ctcggtcgca
     9181 tcgtgttcac aatccgcgca ctgaagatgt aaacacatcg cccctatgat taaaatcacg
     9241 gaacatatcc aaactggcac aagctggaga taataaaacg acatcaccag gtttcgcaca
     9301 tgtcttggca atagtcacag cgccctccag agaagaagca cgcacgacag gaactacttt
     9361 ggctaaagcc gattcaatct tgtcagcatc ttcaccaatc aaaacaatgg aacgaacaaa
     9421 ttctgaaact ggctgggcta attcttggaa atccgcccct tttccctgtc cacccgcaat
     9481 aagaacaatt ttcccttgca tagaacctcc tattccatta atagcagaga ttgtagcacc
     9541 aatatttgtt cctttcgaat cattaatcca acctactcca tctacttctc ttacccactg
     9601 gcatcgatgt ggcagtccag ggaaggtttt taaaacatta agaatgtgtt gcatagaaat
     9661 tcccgctgct tcggctaaag cacaagcagc aagcgcattc atccaattat gcaccccttt
     9721 tattaaaatc gattccactg gcaaaagacg ctccattcct ttcgccaaat aagtagtatt
     9781 ctcttgttca atcagccccc aatttcccat tgaaggcgcg tctttgccaa aagagatgca
     9841 ttttatatct gcttgacagg attggtgagg aacagtgtag acgtcttcac gattaaataa
     9901 aacagccttg gcaccacgat aaatcctttg ttttgcttgc gtataggctt ccatagtgtg
     9961 atgcctgtcc aaatgatcag gcgttacatt aagaatcgtc gcaaccactg gcgacaaaga
    10021 ataagttaaa tccaattgaa aactggataa ctccaatacc cacaaatcgt agtgatgttc
    10081 atcatccaac atatctaaga caggagtgcc gatatttccg gctacagcta cgcgaaaccc
    10141 ggccgcctta gccatttctc ccaccaaagt cgttacagtg gatttaccat tagttcccgt
    10201 tatggcaatg acaggggcgc taatctctct ggccaggcat tctatgtctc cataaattga
    10261 tgcgcccgct tgacgcgctc tctctaaaac aggcgtatcc agtgccaaac cggggctagt
    10321 gataacatcc gtcacctggc tgattacttc atcaggagtc tgttgcaggt aaattggcac
    10381 atcaggaaat tcattttgga attcagctaa tccaggcgcc tctttacgtg tatcaaaaac
    10441 aacaaacgat ttattatttc tcttcaggta tcttgctata gagagtcccg tcttacccag
    10501 ccctgctacc aaatataagg aatgattcat gaatgcacct tgtctatcga agttttaaag
    10561 tagccaatcc gcataacaca aatacaaccg taataatcca aaaccttact atcactttgg
    10621 gctctgacca cccctttaat tcaaaatggt gatgtaatgg ggccatcctg aataatcttt
    10681 ttccgcctga atatttaaaa taacccactt gtaatatgac agaaagcgtc tcaattacaa
    10741 ataatccacc cataatgagc aaaacaagtt cttgtctaac tacaaccgca actatcccta
    10801 aagctgctcc taacgccaaa gagcccacat cgcccatgaa aacttgggca ggataactgt
    10861 tataccaaag aaaacccagg ccggcaccaa caatagaaga acaaaaaatc gttagctcac
    10921 cagtattggg cacataagga attcctaaat aattagagta tacggcgtta ctcgatgcat
    10981 aggcaaacac acccaaggca ccagccacca ttactattgg cataatagcc aagccatcca
    11041 gcccatcagt taaattcact gcattactgc ttccaacaat gacgaaatag gcaagtacag
    11101 gaaaaaaaac gcccagatcc caagtgaccg ttttaaaaaa aggaactgtg agctgagtat
    11161 gtactggcaa actggcattc caatacaaat aagagacagc aactaaagca atgactgact
    11221 gccaaaaata tttccaacga ccaggtaatc ctttgctatt ttttaatacc aacttgcgat
    11281 aatcatcaac ccaaccaacc aaaccattag ccaaggtaac caagagcacc agccacaggc
    11341 ttgtttgtct taaatcgcac cagagcaagc aactcacagt gatagccaat aaaatcaaaa
    11401 cgccccccat agtgggagtt cccgcctttg ataaatgggt ttgggggcca tcactcctaa
    11461 ccatttgacc tatttgcagc cctcttaacc agcggatcat taatgggcca cataacaaac
    11521 ccactataag ggcagttaat gaggctaaaa tagacctgaa tgtcaaatat tgaaaaactc
    11581 taaacgcatg atattgtccc tgcaataact gcgttaacca atagagcata attattcctc
    11641 ttgttcttaa aattatgctc aatgactttt attgagcatg attcctttaa tggggcaaaa
    11701 aagtggccaa gcataccaca ttcctgtcga ttcaatgaag aggttagccc tctacctgaa
    11761 ccaaccggtg cacaacattt tccatagcac tggacctgga tccttttacc aataccgtgg
    11821 tatcaggtgt taaatcattt tttaccactt caatcaactc ttcttgactg caaaaatgct
    11881 gacctccctc accaaacgcc tgggatgcca gttcactatg taaaccgcaa ctcatcaact
    11941 tatctattcc cagctggcga gccgctacgc caacttctct gtgatgttgt gtcgtccatt
    12001 cacccaactc tcccatatca ccgaatacaa aaatttttct tcctgggcgc ccagataaaa
    12061 cttccagggc tgttaagaca gagcgtaaat tagcattgta tgtatcatca ataactgttg
    12121 attgattttg ccctgacaac atcgtcatcc gaccttttac accaccaaaa tgagccagtc
    12181 ctctttgaat gtcattgcct gatattccta cagcataaca acaagctgcg gcagccaaag
    12241 catttcggac attgtgcaaa cctggtactt gtaactcaat ctccactctg ctattaggta
    12301 aaaccaatgt aaaatgagct cgcccatggg tatccaagcg tatatcctgg gcgtaaatat
    12361 ctgcaggatg aagtgaggaa aaacgtaata tttttttatc agcaatcaaa tcatcccaaa
    12421 agtgagcgta ggcatcatca tcattgacta tagcaacacc agtcggggat aagccttgat
    12481 ggatttcacc tttggaacga gcgactccgt ctattgatcc aaagccttcg acatgtgccg
    12541 gggcaatatt attaattaaa gacacatcag gctgcactat ccctaccgta tgtgctattt
    12601 ctccgggatg attggctccc aactcaaaaa cagcatagcg gtgctgctta tttaaagcta
    12661 acatgcttaa aggaacccct atgtgattat ttaaattgcc tttcgtagca tgtgatggct
    12721 gcggtaaaat agtcgctatc atctctttga cagtggtttt tccatttgac cctgttaaag
    12781 caataatagg gcaactcatt tcctgtcgat gtgccgcagc aattttggcc aaagccatta
    12841 aaggactggc aaccacgaat tgaggaatat gaacaccgtc aatcgatcga ttaactacag
    12901 cagctgaagc gcctttagcc tcggcttctt taataaaatc atgaccatca aagcgttccc
    12961 ccactatcgc aaaaaataaa tttcctggct ttaatgtgcg ggtatctata ctaacaccag
    13021 taatgtcggc attaatctgg caagactgag aaagaagtga cgcaatagta attaggttca
    13081 tagtattttg tgatgtcgaa aagactagtg tactaacact caggctcaca gttcaagatg
    13141 gtttgagaat agatagataa gaatataact aaaaagtcaa gaattttaag tttattacaa
    13201 tccgattcat aagttatcag acattaacca ttaacagagt agataatgag cttcgcctgg
    13261 tgcgaagccc tatcctgaaa atataaccgc tagatagtgc aatgattcta gcctatgggc
    13321 attagtttgt tacacaatca tccatcaaat gctcaatttt caagtatcga tgatatcgtg
    13381 cgatacgctc ctccgttaga ggtttgcgct ggtcatccag caaataagcg tcgagaccct
    13441 cacttaattg ttttgcagta tctaacataa cagaaaaccg ttctgcatta atctcaggat
    13501 tatttgatat ttgcatgaac agacataatc ctcttacact gaaagcaccg atattctgta
    13561 aatcaaaaac accggttgct gtagctgcag ctaaactgca aagcactgga ccttgtccat
    13621 tcgtgaattg atgtctatga aacaagtgcc tctctccaaa tctcaaacca gcagccaaaa
    13681 cagtttgcaa taattcataa ccggcaaatt gtcgattttc cttggccaac aaaaacacca
    13741 tggcggtgga agaagaacag tcactattag gttctgttct ttcatttaat tcgcactctt
    13801 cttcctcggg aatcaactga ggttgttctg tttttacaga gggcttcctt attgcttgtc
    13861 gcttttcaga accatcaaaa ttttcaaaat ccaaaggaac ctccctattg accttccgca
    13921 cagcgataat ttcatcatta tatgattgag agccatagga gttattttct acttggccaa
    13981 gagaaggttg atagtgttct tgatttaagc tctgtcttct agtcttcatt aaacggccaa
    14041 tagccactag aacgccaatt aacaacagga cattaagaat taagctccaa tttgcctgca
    14101 taagtttact ccatagtcaa agcttgtttc acatcaaccg caaccaaacg agacactccc
    14161 ggctcacgca tggtcacccc aactaaatgt tcagccaatt ccatagttac cttattatga
    14221 gtaataaaca ggaattgtat gaattgtgac atctctttta ctaaatcgca aaaccgactt
    14281 acatttaagt catctaaagg cgcatctact tcatctaaca tacaaaatgg tgaaggattt
    14341 agctgaaaaa ttgcaaacac caaagccaca gcagtcattg ccttttcacc accagataat
    14401 agatgaatag aactattacg ttttccaggc ggctgcgcca ttactacaat ccctgcttct
    14461 aacagattat cacaagttaa ttcgagctgt gcccgaccac cgccaaataa tcttggaaaa
    14521 agcgctttaa aagaggtgtt cacttcatca aacgtatttt caagacgcga tttcgtttca
    14581 ttatccattt tttcaattgc agtttccaaa gtagataaag cttggctcaa atcattatat
    14641 tgctcatcca ggaacacttt gcgctgctgt tcggcagcaa attcttcgat ggcggccagg
    14701 tttatagcgc ctagcctttt aattttctcc aaaatcgcta tcaactcgtc ttcttttata
    14761 ctttgcgtga ctccggatgg aattcgctct aataaagact gggcttgtaa attagcctca
    14821 tcaagagttt cttgaattga actggcacga acggataggg cttgtttttc catttggatt
    14881 tgattcatga gttcctgaat ccgttttact tcctgatcat agtttaaaat taatttctct
    14941 tggtcttcaa gttgcaactt aagctgagat actttttctc ggctcaaagt caacatcaat
    15001 tcgatttcac catgttttat caataatgct gccaattgat ttttaaactc ggcttctggc
    15061 gctactgact gtaaataatg ttgagttaac tcttctaaac gcatctgtgc acgttgcaaa
    15121 cgctcttttt ctctacttat cctatcggtt atttgctgta tcttggtgac ttctctatca
    15181 tattccaact cactttgatg cagcaaagca cggacactct ctacttgttt attttgttca
    15241 acgagaacac tgttccatgt gtctttttca tttataaatc gcttgaattg caactcagaa
    15301 gcctggtatt gaccttccag ttctctgatt ttatcagcca tttccaattg ttcagcgttt
    15361 agctcttcca gcgacgactc caactctatt atctcgttcg tgatagcatc tttctgtttt
    15421 tcagcgtgaa aaatagcttg ttcctgacta tttaccgcaa tgatatgatt gcgtagcgcc
    15481 tcattactgg tatttaaatt taattgatgc agtttgataa aatttaaatt ttcctgtagc
    15541 cgcgcttgat aactatctct tgctaaacgg atggattcaa ttttttgttg taaagattcc
    15601 acacttaaat tcaactcgat aatcctttgc tgtctggcaa gaacgcccac ctcatcttgc
    15661 tctttttggc gaggtaattt aatccacccc ttgcctagcc aaataccatt gacggttaca
    15721 atagattcat gagccaataa atcaggaaac caggtctttg cctcttcaag actgtctgcg
    15781 gcataaatgt gttcaagatg gtttactgtt gagggaacca agccttgaat tttatcagct
    15841 aaccttgggc gctcctgctt ttccccattg agagctctca tcgtcaccac gttctcttta
    15901 tgatcttcac aaaactgcca ccgagaccat agctcagcaa aatcatccaa tacataagcg
    15961 attagatcat ctcctaatac gatttcacaa gaagattgcc attggggttc aacctttaaa
    16021 acatccatta atcttggctt atctgaccat tccgcaattc cgtccttatt aggccgattt
    16081 tccttttttg ccgcaatttg agcagctttt aatgcagcaa gctcagtgtt taaacgatga
    16141 aattcatctt gcaatgtatg cagttgttgc tcggtatttt gtaattgatt ctgcaaatcc
    16201 gattgagtct cattcgcttg cctaagctgt tcctcatcaa actcctgtgt ttctttcaat
    16261 tggaaatgct tttcttgcaa ttcaatttta tttttttgca aatcgtcaag cgagatagct
    16321 gattgttcca agttcagttt ttccagcctt accaggactt gatggcgctt ctgctctaaa
    16381 tgttgtagtt tggcttgagt gagttggtat tcatttttaa tggtattgga attaatttgc
    16441 acctcttgcc aaattttctc ccattgcgat tgttcctttt gtttttcttg ccatagagat
    16501 tcctgttctt tgaattccat ttttaaatga tgcaaatgct cctctaattg ttgagcctta
    16561 agcttgcaat tgtgcaattc ttcattatcc agcttaagtt gctcttcaat gagttgagag
    16621 tcaacctgca tttgctgcct gtcattttcc aaacgctttt tttctctttc ttgttgctga
    16681 atggcttctt caagacgagc tatgtcagtt cctgaatgat agagagaatc ctgaattgat
    16741 tgggattgat caatggcatc ttgtaattgt tcatttaaaa ctgcccgctc cttgtaacaa
    16801 ctagttaata aactttgttg ctgctcattg cggattgcta actcttgtaa ttctcgctgt
    16861 tttaccgttt gtttttctga gtattcctgc catttaagag cctggatctc agctcggcaa
    16921 attttttcct cttcctttaa aatggtatag cgttctgctg ctttggcctg ccgctccaaa
    16981 cgttgtaaat atttgcccaa ttcttctcta atatcagcga cgcgcgtcag gttatccctt
    17041 gtttgttcaa tacgttgtaa agtttcccgg cggcgctctt tgtattttga aactcctgcc
    17101 gcctcctcca aatagaccct taattcctcg ggttttgctt ctattaatcg agatacagta
    17161 ccttggccaa taattgagta acttcgtgcc cctgctcctg tgcctaaaaa aatatcagta
    17221 atatcttttc gcctgcatcg agctccattc aaataataaa aagattctcc atcccgagtg
    17281 actattcgct ttacagcaat ttcaccataa ctggcaaaag ggccagtcag tcttcccagg
    17341 ctattatcaa ataccagttc tactgacgcc tgtcctaccg gtttgcgatt ggaagaaccg
    17401 ttaaagataa tatccgtcat ggactctcca cgaagatttt tggcagagct ttcgcccata
    17461 acccagcgaa cagcatcaat aatattggac ttgccacatc cattcgggcc cacaacagcg
    17521 accaaacgac tgggaaaatg aaccgtggtg ggatcaacaa atgatttaaa accagccaat
    17581 tttaattgct tcaaatgcat tttaactgcg aattataaaa taataatcgg ttagtatatc
    17641 gtaggaagtg aatcctgact atttcagaac atccatatcg ctctcttctg ccatcgttaa
    17701 ggacaacatg ctcaattgac aaacaatttt atcgctttat aatacatact tctgttaaca
    17761 aatgtaggta aacaatgaaa cagcaattct ataaattgcc ccaaattcta ataagccttt
    17821 gtctcctatt gattctttcc accccaatcc aagcagaacc gccaaatctt agtttaatta
    17881 gaaaagaaat taaaaactat tacgactctg gcttgtatta tcacgaatta gaacgaacca
    17941 ttaagttagc tcaagaatat atacaccaac aatatttaat caataaaaac aataaacacc
    18001 cacaaaaact tgccatagta ctggatattg atgaaaccag cctgtccaac tatgataaga
    18061 tggtaaaacg ggattttacc ggtagcaaag agcaaattca taaagaaata cttgctgcca
    18121 attcaccggc aatcaagcct atgctgacac tttacaaaaa cgccttaaaa cagggtatca
    18181 aagtattttt tgtaaccgga aggcaagaat ccgaacgcga cgcaacccgc gctaatttaa
    18241 ttaaagcagg atatactaaa tgggcaggac tttatctacg gcctaatggg tattcttccc
    18301 cttcgattat cccatttaaa tcaaaagcaa gggaaatgat agcaaaaaag ggatacacca
    18361 tcattgccag catcggtgat caatgcagtg atatccaagg ggggtatact aaaaaaggat
    18421 ttaaacttcc caatccattt tactacttgc catagtcaag gcgtgatggg tgattaggtt
    18481 tttcgtaggt cctgttgatt ttgaatctat gaaacctcag gcacaacgac ccgaggtttc
    18541 ttaataacta caagcattaa gctgcttttt ctttcatccg aattgccatg acttccatag
    18601 ccaggaattt gacataatca taggtcacgt aataatctcc ttgatctcca gcaaatttgg
    18661 accaagaatt acgcaaggtg aaaacgcctt tgttaacatg gccttcttca tccatcactt
    18721 caagatcatc atcatagcca gtgatcacta attcgtgccc ggcatagatc attccattca
    18781 tcgcatccaa aacaatttca ggtgttaaca tccaggtgtc attgtaagca cggttggtac
    18841 ctacagctcc ggcatcccca acaaacacat ccaataacat gccgatagtc aagcggttac
    18901 ctttcgcgag ctcctccttg atctgataga cgatttgatt catatccgct ttagctgaaa
    18961 aggattcctc atcctttaac aaagcctccc agctaattaa atttgatacc gggacgctat
    19021 gcgccaggaa ctcggagtca gacatgggtt tcccttcatt attttcgtct tctaacggat
    19081 attctctaac accggcgcaa ccattcaatt tctgataatt ctgactgata ataccgtatt
    19141 cagaaatctg ttgaagaacc cagtaaccaa aagagccatt ccacccgctg gctttggctt
    19201 tgtcatgtat cgccagataa cttcctaact ccagattaca caattgacta atgtaatccc
    19261 ctgccccaag ggcagcatct atggctgcag ttactgcgaa agtgacacaa ctaccatgat
    19321 atccctgatc caatactggt gttaactgca ttcccaactt aacttttctt ggtaactcag
    19381 aagaaaaact ggctgtgttt atactatttt taggatattc tgacagctgt tcacgcaaat
    19441 aagatttcgc ttcggtcgat aattcatact tgggcaactt aaatgttaaa ctttgagcaa
    19501 ctccactggg atttttaggc gtaatgtgaa catcaacctc tccttttaaa gtcaaaggac
    19561 ctgcaaaagc cagcgatgaa gagaaagaca atacagctaa attaattaac ttactcataa
    19621 aatatatccc tataattaac cctcttgcat catatcaaga ggtgaattaa atgcaaacaa
    19681 atcatgcgaa taagaataaa atgacaagct agctttctat tcacagagta gaaaccattt
    19741 taaaataagg tacctgttcg ccagagcgct atgataattt ttatcaaaca aattctatcc
    19801 cgaatactga aataacatcc tctcattgac gaatcaaaaa taacaaatca gattcaattt
    19861 aagaaaacaa gcaacttgac ttgagttcat atataataag cctgattcta aaaaagagga
    19921 tattaatatg cgtactctat tgtcatgttt cctgataacc ctattgtctt ttggtttaat
    19981 tatcaatgag gcctctgcta aacgctttgg aggcgggcgc agcttcgggg ttcaacgctc
    20041 tcaaagcagt cttttctcat ccaataaaac acacaatacg tcttcattaa cacaaaaagc
    20101 taataaaagc agatggggtg gcgtattagg cggcctcctg gttggaggac tattggccag
    20161 tctctttatg ggcaatggct tggcaaatgg gttaatcacc tggctaatcc ttggttcagt
    20221 cattttcttt ataatcagct tcttacgcag gaaaatgaac ccagggtttc aagcaactca
    20281 atccggagca ttccgccaaa actcttttga acaattcacg caaaactacg gaaaccgaaa
    20341 tagtggagga gctcattttg cccaacaaga aaccagcttt gacgcggaca attttcttcg
    20401 tgatgccaag ataactttta tacgtctaca agcggcttac gaccaaaaaa atctgcagga
    20461 tttgcaaaca ttcacagtac cggaagtatt tgcagaaatt aaaatgcaac tggacgaacg
    20521 aggcgatgcc cccaaccaaa cggaagtcat ttccctcgat gcaaaattgc ttgatgtgtc
    20581 caaacaatcc ttatccatga tagccagcgt acaattcact ggaacaatca aagagaacgg
    20641 tgaaatatct aacctggatg aaatatggca tttccgccag tttgataaca gaaaagagtg
    20701 ggtcgtaggg ggtattcagc aagaagtatt tcagccataa atacttttag gtttcctgga
    20761 gtagcaactg tctttaatga cagttgcact aaaaatcaaa gaaaataact gaaatcactc
    20821 aacaatatat tgcacctgga tgatttcata ttcaaccata ccgccaggcg tttctaccgt
    20881 gaccgcatca tcaagctctt tgccaattaa agctcgagca ataggagaac tgtatgaaat
    20941 cttgttcagt ttgatatcag cttcatcctc tccaactatt ttataggtta attccgagcc
    21001 cgttgctaca tgacaaattg taacagttga accaaatatc actttaccat tgttaggtaa
    21061 tttactgata tcaattattt gcgcatgaga caacttcgct tcaagttctt gaatacgccc
    21121 ttcattaaaa ctctgttgtt ctcgagctgc gtgatattcc gcattttctt tcaaatcacc
    21181 atgagctctt gcagttgcaa ttgcttctac aatgcgtgga cgatccacga actttaagcg
    21241 atgcaactct gcttttagtg cttctgcacc ctcaactgtc ataggatgtt tactcatatt
    21301 tacccctaat gtaaatcttg taagcgagtt acagtttccc tatcttcata cttcatagcc
    21361 aaacaagcag cttcggctcc tgataaggtc gtagtgtagc tgaccttatg ctgcaaggcg
    21421 ttgcgtctga tagcaaaaga atctgctatc gcttgtttgc cctcagtagt atttacaata
    21481 aagtctattt cattattttt tataaaatcc agcacatgtg gtcggccttc tgctacttta
    21541 aagactcttc tgcagtctac gccggctgct tgtaatgcca aagcagtacc gcgcgtggcg
    21601 ataatttcaa aacccagttc tattaatctc ttggcaatct cgccgacacg cgttttatct
    21661 gcgtcacgta cggatacgaa ggcccgtcgc cgtttggcaa tgtgacatcc ggcacccaat
    21721 tgtgctttag cataagcttg tccaaaacgc ttggcaatac ccatcacttc tcccgttgat
    21781 ttcatttccg gtccaagaat cgaatccaca ccagaaaact tgataaaggg aaaaaccggc
    21841 aacttaatcg aatagaaaga aggcgtatga tgattctggt ttaatccttg atctttcaag
    21901 ctaattccta ctttacaaag agccgctatt ttagctaatg gcagaccggt agcctttgaa
    21961 acaaaaggca cggttctcga agcacgcgga ttcacttcca aaacataaat atcatccgct
    22021 tgaatagcaa actgcgcatt aatcaagccc accacgccta atttcaaagc catttttcga
    22081 atctgctcta tcaaatcctg ctgaacaact acgcccaagc taaaaggagg taaagtgcat
    22141 gctgaatcac cagaatgtat ccccgcttgc tcgatatgct ccatgatggc accaattaat
    22201 acgtctttgc catcacagac ggcatcaata tccacctcta tggcatcatt caaaaattta
    22261 tcaagcagaa cgggtgaatc attagaaact tcaactgcat gcgacaggta ataccttaaa
    22321 tcctcttctt gataaacaat ttccatagct cgtccaccga gaacataaga aggcctaaca
    22381 actagcggat aaccaatttt gttagctaat tcaatggcct ctgcttcgct tcggacagtt
    22441 ccattatcag gctgatgcag tttcaattct ttgaccattt gctgaaatcg ttctctgtct
    22501 tcagccatat caatagcatc tgatgaagta ccaattattt ttacgccatt agcctctaaa
    22561 tcacgagcca actttaatgg tgtttgtccc ccataatgca caatgacacc ctccggttgt
    22621 tccattgcga cgatggacaa cacatcctct aaagtaacag gttcaaaata tagtcgatcg
    22681 gaggtatcaa aatcagtgga aaccgtttct ggattgcaat tcaccataat agtttggtaa
    22741 cccgcgctcc ttaatgacaa ggccgcatgc acgcagcaat aatcaaattc aatgccttgg
    22801 ccgattcgat taggtccacc tccaagaatc ataatctttt tcttattgct ctcaggacgt
    22861 gcttcacagc ttccttcata acaagaatac atataggctg tatcactagg gaattctccg
    22921 gcacaagaat caattctctt gtagacgggc aagatctcta attcaacacg tcttgcccga
    22981 acttctgctt ccgtacaacc aagcaatttg gccaagtagg cgtcagcaaa accccggtgt
    23041 ttcatcaagt gtaaagcggt tttatccaga tcccgaatcg tttttccgat gattgagcgc
    23101 tctaaaagaa ccaactcttg aatttgtgcc agaaaccatg gatcgactcg actttccaga
    23161 tgaatttcct caagtgataa attttgccta aaggcatcag caatatacca aagtctatcc
    23221 ggagtgggtt ctcgtaaatg ccctcttaaa cgcgccatat cctctttttg aaacagcgaa
    23281 tgcaatccac agcgtccaat ctctaaacct cttatggctt tctgtaaaga ttcttgaaag
    23341 ttagaaccaa tcgccatgac ttccccgact gatttcatct gtgtggtaag agtatctgga
    23401 gtttgtggaa atttatcaaa attaaaccgt ggaactttgg taacgacgta atcaatgctg
    23461 ggctcaaagg acgcaggtgt tttacctccg gtgatttcgt ttttcaattc atccaaggta
    23521 tagcccacag ccaatttagc tgcgacctta gcaataggaa aaccggttgc ttttgacgcc
    23581 aaagccgagc ttcgagatac acgcgggttc atttccacaa ccagcatgcg cccgtcttca
    23641 ggattaatag caaactgaac gttggaacct cccgtatcca caccaactgc ccttagaact
    23701 ttaatcgccg catcccgcat ccgttggtat tctttatcag ttaatgtttg tgccggagca
    23761 acggtaatgg aatctccagt atgcactccc atagggtcaa aattctctat agtacaaaca
    23821 ataatgcaat tatcattttt atccctgacg acttccattt catattcttt ccaacccaga
    23881 accgattcat caatcaaaag ctcgtgagtt ggcgacaact ccaatcctct aatgcaaatt
    23941 tcttcaaatt cttcacgatt ataggcaata ccgcctccac taccacccat ggtaaatgaa
    24001 ggcctgatga tggcaggaaa gcctaaacgg gcttgtactt gaattgcttc ttccaggcta
    24061 tgagcaatcg ccgaccttgg catatccaat ccgattttaa tcatcagctg gcgaaatttt
    24121 tctctatctt ccgccctgtc tatggcttca cgcgtcgctc ctatcatttc aacagagtac
    24181 ttggctaata ccccttctct taccaagtcc aaggcgcagt ttaaggctgt ttgtcctccc
    24241 atcgtcggta aaagagcatc tggcctctct atttcgataa tacgagccac ttctttccat
    24301 tgaacaggct ctatataggt ggcatcagca agctcaggat cagtcattat ggttgctgga
    24361 tttgagttaa ctaatatcac tcgatatcct tcttctttca aagcgcgtac tgcttgggta
    24421 cctgagtaat caaactcgca agcctgccca atcacaatag ggcctgctcc aagaattaga
    24481 atagatttta tatcggttcg ttttggcata atgacaataa aaaaagaata aagtgatata
    24541 ttttaccgag ttttgcccaa agattatacc cttggataac atgttttgag ttattaattg
    24601 ccagaaaaca tccaacggca ttaaat
//
LOCUS       DACVWI010000029        23823 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.029, whole genome shotgun sequence.
ACCESSION   DACVWI010000029 DACVWI010000000
VERSION     DACVWI010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 23823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23823
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.029"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            66..383
                     /locus_tag="JBH85_04395"
     CDS             66..383
                     /locus_tag="JBH85_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HAU0945434.1"
                     /translation="MTMMITTGNSFDGKVIKQCLGIVRGIVVRSPTISQGLMGGLKSI
                     VGGKIGAYSQMCEHAREEAFQLMIEHAQALNANGIIAMRYDTGEIGQAGTEVLCYGTA
                     VII"
     gene            635..3283
                     /locus_tag="JBH85_04400"
     CDS             635..3283
                     /locus_tag="JBH85_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945435.1"
                     /translation="MPIDINKYYSLIVKMPCPSEGGPTLNLAFGKDTAKRWGVVFLQR
                     IKTPNGLGTVIGEYKDRLWIWLDDNRGVSRWEVKDNLFSMKGFEPVKKPSMKSYPDEV
                     EKYIENLFQCSINELVTFTQNPFLLIFGEESKQAIEAIEKNWGLWLEYTTTNLNTWSN
                     YFTKYLQEHSQNPLEKMQQYGELTSRVTGIPKITIKEFNLSYVKEIKEVEEQIFELQQ
                     QKSSLLEQTTAKEDQEQIKGMFKNLEQVLHDKLEQLNKLEEQNRRQKMLTSQLNKVLT
                     NQQFAEFNQHAKRIELTVNSLLAIKPQLQDKHFMKTYQAMLTLMAQYLYEQDLIEKQS
                     EATDKTGKEEAEANLSPDLFTGLVFAMVAGDSTIKKAYYLRLINRLDNNNNAAKEMPV
                     TFDLEIWAVSNPQQMINLCRFLFNNSKFKQFEEGLSYKEYPLFIFEIVKLKMSFILAL
                     NEVQKNNSKFSIPQEIKFHAQKTIDLLVDLILDGNEEIAIWAEKQIKGNKNPFIKNYR
                     VYAALAEFYATPPHVNEEKGLFFYNEGKTSTKDPEENKQAKLVSILYEAIHGSTGEIR
                     RAAVELLNQKREYHYLKLVGHKNPDAALLCLDYCLANNQLDEAKQYITLARKADRAKA
                     AYFEALLVDKQKGDFMPFFLEAIEFGFAHAGYALRKMLSVLLEKKQIEEINERYLNLL
                     NKPFVLNILTVPVIKDTIMAVYNSTGDTQQQEEFREKWMFNLLVVVKNTEIVQKTDLV
                     VTIITECRELLSDEGLLVALSILSKQRYFDEPGDPFLLDAIAQIITEQDKKGPKHFFN
                     LGIYDFLKNNTKLVVLLMNNSSSKERLAQCERFTSFIKKEQIRIEESDKVKNQPSLAN
                     LGLFGDNNNLPEEKGPSPSPMGTKKG"
     gene            3698..4834
                     /locus_tag="JBH85_04405"
     CDS             3698..4834
                     /locus_tag="JBH85_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitin-binding protein"
                     /protein_id="HAU0945436.1"
                     /translation="MKKILGSIGLAVVSISLFAHGSMEVPISRTYQCYKEGPESPKSA
                     ACKAAVQVGGTQPLYNWHEVNQAAANDRHRELIADGQLCAGGRDFFKGFNLARTDWTT
                     TVVHPDSNGRFQFVYVATAPHKTKYFKFYVTKDGYDFNTPLKWSDLETSPFCTITSVT
                     LANGRYQMDCPLPANRTGKRIFYVIWQREDSPEAFYSCSDVFIDSTAQAPTWFELQNF
                     YGSGDIAANTKITLRVFKHEVEVESTSITVTESNRTAEQWPLALGAAVNNRSSLVRIG
                     QLDPQSGQVVLAANQANKIYLSDSDTSSYHVLVDFAEPSGNSDLIYPDGISTYKAGTI
                     VLGRLDRKYYQCKPWPYSGWCSQAPAYYEPGVGLAWREAWILLG"
     gene            5212..6246
                     /locus_tag="JBH85_04410"
     CDS             5212..6246
                     /locus_tag="JBH85_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945437.1"
                     /translation="MTIMRVFLSFLLLFFNSLSFAQSELPQLFLFLGGDRASTFQETL
                     QNPCIRGVQIIYSWRQLEPQKGVYDFSKIEEDLNDLSRIDKKLFIQIQDRSFSPDVFP
                     VPDYIRMEKAYHGGVVQQYDFPGEGKPITAGWVARTWDPAVRKRFQLLLKKLASKFDG
                     KIYGINLPETAIDLDPNHLPEDFTSDKYFYSVLDNMGYLKKVFQKTKVIQYVNFFPDE
                     WNNDHHYMSRLFSFARSHHIGLGGPDVVPYKESQMKNSYPFFHKFKGEIEAAIAIQEP
                     DYTYTNPKTGDFYRFDDFYSFSKEYLGAFILFWNTEEPFFSEQLLPKLNDSYFQCDKV
                     NDKANTADAN"
     gene            6359..7729
                     /locus_tag="JBH85_04415"
     CDS             6359..7729
                     /locus_tag="JBH85_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HAU0945438.1"
                     /translation="MLVELLSRIQFGFSIGFHILFPTLNLGLAVFLVIMEALWLKTKN
                     PVYLEICKFWTKIFALTFGMGVVSGIVLAYQIGTNFGPFITQFGNVLGALFAYETLTA
                     FFLEAGFLGVMLFGWKRVPPALHFIATLLVTIGTTVSAFWIMSANSWMQAPSGYQLIE
                     GKYVVDSWWAVVFNPTFIPRFIHMLLASYVTTCFVIMAVSGFYFLRKQSTAIAKKSLS
                     FSLWASLILVPLQIGVGDVVGINVHHYQPLKTAAMEGIWETQKGAPLLLFAIPSQTQQ
                     KNFYEVGIPKLASLINTHEWNGEMIGLSSVGNEEQPRMAPVFFSFRIMVGIGLIMLFT
                     AIAGFILRLRGTLFENSWFHRWCIVMAPLGFIASIAGWLTAELGRQPWVVHGLLKTRD
                     SVSAIGVEEVIISFVLLIVAYGVVFGFYLYYLLRLISHGPGILEEDEVEHHAFQYMTD
                     FPKEKK"
     gene            7729..8718
                     /gene="cydB"
                     /locus_tag="JBH85_04420"
     CDS             7729..8718
                     /gene="cydB"
                     /locus_tag="JBH85_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HAU0945439.1"
                     /translation="MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTSSESERDKMM
                     NSIAPVWDGNETWLVFGGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRF
                     KAKRSKTLWNWSFSISSVAATFLQGVILGAFVQGFSINESSMTINDPDWLTPFSLCTG
                     IALVCGYALLGATWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFH
                     RWYSFPNMLLLSPLPLIALIAIYLVWQNLSSGSEYKPFIYSIIIFLCSYIGIAISVYP
                     YLIPHQVTFWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLFRGKSSENYH"
     gene            complement(8719..9504)
                     /locus_tag="JBH85_04425"
     CDS             complement(8719..9504)
                     /locus_tag="JBH85_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HAU0945440.1"
                     /translation="MNKMIILLVIAIIFLHMCLIWLWYRYTNNPSVVDVGWASGLTLA
                     GLIYLNNQEFSLRSLLLVLALLTWGIRLGGYLWWTRIRLKKIDKRYLALSNDWKLAKP
                     LGFFLNFQLQGVLICLVSIPWYFSSSETQTTLNLLDGLALIIFLTALILETVADNQLQ
                     DFKKNYPGKVCNQKLWRYCRHPNYFYEWLVWCSFTLFALSSPYGWIAIISPLTLYLIM
                     TKITAPMTEQGSIESRGNLYIEYQKVTPMFFPKWLKNNSTPRK"
     gene            complement(9501..10037)
                     /locus_tag="JBH85_04430"
     CDS             complement(9501..10037)
                     /locus_tag="JBH85_04430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2878 domain-containing protein"
                     /protein_id="HAU0945441.1"
                     /translation="MIINPVHIVHYLSYYLCWIFCIYLASYGYPLLGLIFTVLIMGLQ
                     IIVQILNQLPWRDALYFSIGLALLGAITDAIWLYSGMIYFKANFFGSHFPPLWMVALW
                     LSFGFNLVVLYGSWLTYYFLWGLVMFPSIIFAYWLGVQFGAATLIGSEVVFYLTLGLT
                     WSLFLPLSLYLFNYLHRK"
     gene            complement(10027..11814)
                     /locus_tag="JBH85_04435"
     CDS             complement(10027..11814)
                     /locus_tag="JBH85_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family EDD domain-containing protein"
                     /protein_id="HAU0945442.1"
                     /translation="MPLDKLIGITFHAAIIAGCHRLIRHKQILNAINVFPVADGDTGD
                     NLSSTCMAIIYFSSVKADLRGTLESIADASIIGARGNSGIIFSQFFNLLAKHLPLKEE
                     LYFNDFSKIMVQVGKEIATVVTNPVQGTMITLIQKWATVCEIKQPDSLLAQAMLELLP
                     LLSVEVEQTKNSLNILQKANVVDAGALGFYYFVEGFTQFLQQSHTTDTANTHSPLSIT
                     EHPQLTCTTTEYRYCTEAVLKSASIDKNKLLHFLKEQGECASVTGNDRITRFHVHTNN
                     PREIFTRLYKDYTIQYPKVDDMQRQHELQFGKKYKIGLVTDSSADLPQDLIDEYQIHQ
                     IPLNIHVDEHHLLDKHCFEANYFYTQLNSFRTYPKTSCMNPNLIEEKLAKIASHYDHV
                     LVLSISSKMSGTYEAFLTATKKYTNITVLDTKTNSGAHGLLLHYAGQLIASGNDIDTI
                     AKLLGKAIKNTYIFVMVNQFESMIRSGRVNKISGRIAQWVNIKPLVSIDSAGQGIMVG
                     KCFSASRARNKLINFLQEKKDEAQLILEDYCIIHAGDKNQALHLAEMTTQAFNKPPTY
                     IEPVSLAIGLHAGQGCIAIAGRLRERNDY"
     gene            11897..12595
                     /locus_tag="JBH85_04440"
     CDS             11897..12595
                     /locus_tag="JBH85_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAU0945443.1"
                     /translation="MARYLVIAASSAIGQSVTTLLKNRGDTVFTTARDNHKISPDFQL
                     DATHFDAVLDVFRQTGPLDGVVNCAGSLLLKNAHSTSFDEFQVVINASLTTSFATIRA
                     AGLTMNQGGSVVLISSAAALVGLANHEAIAAAKAGIIGLAQSAAATYASNNLRVNVVA
                     PGMVNSPLTSSLLSNQLVLNASKGMHALGRIGVPEDIAHAIVFLLNPDNSWITGQVIA
                     VDGGLSRVRPKMKI"
     gene            12612..14150
                     /locus_tag="JBH85_04445"
     CDS             12612..14150
                     /locus_tag="JBH85_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cryptochrome/photolyase family protein"
                     /protein_id="HAU0945444.1"
                     /translation="MTTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVPHH
                     PKKIAFLFSSMRHFAQQLKKKGYRVRYTTFDDPRNQGSFAKELLRAIEEEQVSAISLT
                     EPGEWRVLKIFHGLKSQLTIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQ
                     KYHLLVDNNGKPVGGTWNYDAQNRKNANHISSFPKRLEHTRDVITDEVLGLVSARFAK
                     HFGQCYPFNLAVTREQALEEANYFMEHFLCNFGAYQDAMLKDEISLYHSKLSVYLNAG
                     LLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVRGIYWLFMPDYGEMNYFNA
                     CRPLPSFFWGEETGMFCIKEVVRQTSTEAYSHHIQRLMITGNFALLAGLDPKQVCEWY
                     LAVYADAYEWVELPNTLGMALYADGGLMASKPYAASGKYIHRMSNFCQSCYYNPNDLL
                     GEKACPFNALYWNFLHQNQEKLKDNPRLRYAYMNWQKMDFDKQKKTIHKAQRILADLD
                     SANL"
     gene            complement(14155..14568)
                     /locus_tag="JBH85_04450"
     CDS             complement(14155..14568)
                     /locus_tag="JBH85_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2177 family protein"
                     /protein_id="HAU0945445.1"
                     /translation="MNGWTLKVFAIAFFIFIVTDMIWLGFIARNLYFDQYQQWLRLSE
                     GQLKPIWWSALLVYLLFALSIIVFVIPLAKTSLPYAALYGALLGAIIYGIYDFTCLAI
                     FKDFPVGMAFLDWLWGIVLCSWCSVATIYVASYIK"
     gene            14584..14754
                     /locus_tag="JBH85_04455"
     CDS             14584..14754
                     /locus_tag="JBH85_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945446.1"
                     /translation="MIFILLVLYFTFNRIQVIELHFQNLSFNKKLILWLIEINASYYK
                     RISVITILEYGV"
     gene            14758..17817
                     /locus_tag="JBH85_04460"
     CDS             14758..17817
                     /locus_tag="JBH85_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HAU0945447.1"
                     /translation="MCNHSLNEPHLGSSYLACESMFGSYYFALYFALNFFLMIVFYNA
                     KVIFIQVCKYVRFLMKLLRFHELKSLPSMDEKALELLIKVLGNKGIRKLIKSADGKPI
                     SREIMIHEFGIDCQILFITTEASLKPIIVPTENKISGGGKSYCEQFKVYALDDGKTYF
                     LKSVKINAESLTEFTNETDTLSKLGRLVGTFFNEQTQVHYILTTFIKGIDLSRYKNAL
                     PLNINLKHFWEVLGIMISVCHQVKQFHELGLIHRDLKPGNIMLDADMQCHLVDFGSSS
                     SDKEPKPVSWGTASYLAPELNAQEDFIAFSQASDLFALAYSLDELFNPFRQVKFAKVD
                     IGIKNKHLVLLHAEIEACITGLMSNETSVRTLYFSRILQLQRVPESFKSRPEAFTYMI
                     MLLTQWKSCYEAPEMNKELDEIIAEIKVAYENHEQDVVKIITLLEQLSKADGLLNSHK
                     ALLSVLIKSLANVQQQELGQDDILPRRFESDVVSRLIKTPTAKMMAAIKQVSDAIVKI
                     LEQYEHSPAESFEHAVLQDFLEQMVQSDILFGAPKEKIEISDIIKILKANRPEDFVQI
                     QHISFKFAQVALRDLALHDLPKHEPKGAFLEILKKYQAKYAPEETSLFELYHHMAGVR
                     DHNPSKVKKGEGYRFRAFICDELFYGDEIFTTGDNRGREGKPNQRLQTNQVGLMKFEH
                     SAHTKGLLTLNGQSWYADCKTQLPNYDSIHYLSALKTDCPYITGPSGMTSLFMNMMFL
                     LLNPKDQDVILSYSLGVMTYVVGAGYHSIKEILIPMVKCVGIVPDYPQHKGTECLTAP
                     PLYNHYFKAIEEFDKEFAEVHEKIWQEYLAYFRMTYMPVCMRSHCLPHQVPSMEDISS
                     EVKEMLEIVSKSVKNCLEEHKVKRTGDMGLFLSTPCGQTKALEVLSHVCQQQVGLTAI
                     FRQIQAYFKGTFETEEGIIINREMQLKFIAHFFDVLKESPTLLSQFNLTLRIENTIGV
                     HQCELGSSKQKELFLEIKKTSIAANEEQMVANHEPRKENRNVIILPY"
     gene            17836..19803
                     /locus_tag="JBH85_04465"
     CDS             17836..19803
                     /locus_tag="JBH85_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945448.1"
                     /translation="MLSKEKINPFLKNTKRQGSDNLAAMADPTSLKNTGDYRCFNSKP
                     EAYTYFIFLLNQWQTNYIDDKREAIAKAIDSIKMAYENHEQDTLVVHKMLHGLSHLLE
                     QEHADELNALCLVPIKDSQSNENNILPRRFESELACRLIESPTKSMMQAIDLVSQAII
                     NLIEEYSKLDSKSSERTALNFFLQELEGSDIEFGAFKKRPSLEEVIAILKENNPKNFI
                     QIQFISFMFARSVIGPFPLRNLPPFKPTGLFAQVLDKYLQAHSDLTEEEEGFSYQLMA
                     AKNEAEEFRTFITKKLFYQDELYTQGENRGRQGPRKTYLKTNQLGLMKLDHSAHSVGL
                     TVIPEQIWCADAQAQEANQNSIYYKTALTNDCPYVTGPSGMTSIYMNMMLLLLNPQNI
                     ELIQAYSLGIMAYIVGAGFHSVNEILIPLVKCINLLPNYPSYEGLEYLTHPPLYHEYF
                     KQIAQFDSDFIQLRDQVWAYYLNYFKSCYMPLCMRDFCEAEQLANCPDPAPEVKILCG
                     IVLKSIKDCINFHNLNRHLDSRFLGTTTADIDALNQLKEACASQSSISGIMRLLQKYF
                     SGENIARSTAMHKFETRSYIRFFLDALKDNPQIISHINEKMKLDPPLVISTKAEIFSD
                     DFRIECFNLHRILKREYQVKEDCKNTSQLKL"
     gene            19841..20464
                     /gene="ravG"
                     /locus_tag="JBH85_04470"
     CDS             19841..20464
                     /gene="ravG"
                     /locus_tag="JBH85_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavG"
                     /protein_id="HAU0945449.1"
                     /translation="MKNIYPGRVICDMKNAAIIKNRIFLNLDKPVKRFLASDKADTPM
                     TAEFYAEKDYEQLFLDFLSQATGSYDEQISLLIAELDSGADRVAQKLMLALYSPWQKN
                     LLPKAIKTIANKSEEYPLMSDLLIKFCQQHVGSVDAVDDFGETALAKILKKDQQRKSP
                     LLFLVKHGAKHCQLTSALQDSLIVNNSDIYNVAEDNTMDWISNCPQP"
     gene            complement(20711..21184)
                     /locus_tag="JBH85_04475"
     CDS             complement(20711..21184)
                     /locus_tag="JBH85_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan-rich sensory protein"
                     /protein_id="HAU0945450.1"
                     /translation="MNKKSWTELIAWIITFEAIGFFLGMLTQANIPSWYEGLNKSGLT
                     PPGPVFSIVWSILYALLAIVGWVLWCSRNESEMRSVFYLYSVQMLMNWAWTPLFFVLH
                     WTGLSFLWILVMAGLTGLLMFSQTNKKKSLAILLLPYLIWLLFAAYLNGVIWLLN"
     gene            complement(21217..22632)
                     /locus_tag="JBH85_04480"
     CDS             complement(21217..22632)
                     /locus_tag="JBH85_04480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HAU0945451.1"
                     /translation="MTIALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCSVLG
                     QAQAWWLHYSLIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNRCYEPQV
                     IARDKKIKLALVEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS
                     PFILTKRPRGIEIASDDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSG
                     YKRDRDFPAKNATSRLSPHLHFGEISPWVILRALELAKLEHTCDLASVEHFLSELGWR
                     EFSVYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATG
                     YMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPY
                     FRIFNPILQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPII
                     DHQEARTKALSYYQQIKKGMD"
     gene            complement(22727..23434)
                     /locus_tag="JBH85_04485"
     CDS             complement(22727..23434)
                     /locus_tag="JBH85_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HAU0945452.1"
                     /translation="MPSSILSESMIQAFFWSLITIGMYFITQKLYRRWPFWWLMPLAL
                     TPILVASVVLLLHVNYQDYFRGTKWLVLLIGPATVAFAIPIYEKRALIRQHWPVLLIG
                     VIVGSFTAIASSWGLAILLGLDDNLRLSLLPRSISTPFAIEISRGIGAAPDLTAIFVI
                     VTGILGAILGEFILSRLPFNSALARGALLGVGAHAAGTAQAHKIGNTEGAIASLAMIL
                     VGLFNILLLPLISYLLK"
     gene            complement(23412..23801)
                     /locus_tag="JBH85_04490"
     CDS             complement(23412..23801)
                     /locus_tag="JBH85_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HAU0945453.1"
                     /translation="MANKIQQNSFFQIVLVGLFWLASELLLKLVKLPLSGGILGLGIV
                     LLLLATNCLKLNRIRRGAELLLANMLLFFIPGVLAILEHREFIGLLGLKILFIILLST
                     ITVMLVTALVVDYCYRWRTHHAKQHSL"
BASE COUNT         7348 a         4475 c         4844 g         7156 t
ORIGIN      
        1 aagcttctat tttcaagatt ttaaactaat atggaaagat aaaagggata tttagtgagc
       61 agattatgac aatgatgatt acaacaggaa attcgtttga cgggaaagta attaaacaat
      121 gtttgggtat tgtgagaggt atagtagtgc gctctcctac catcagccag ggattgatgg
      181 gaggcttgaa atcgatcgtc ggaggaaaaa ttggtgcgta ctcgcaaatg tgtgagcatg
      241 caagagaaga agcatttcag ctcatgatag aacatgccca ggcactcaat gccaatggca
      301 ttattgccat gcgttacgat acgggcgaaa ttggtcaggc cggcacagaa gttttatgtt
      361 acggaacagc agtgattatc tgataaacta ttactattcg agcgaatgat agattacaaa
      421 attcaagtcc tgtcccccct gctgcaagca attctctaca gcctgctcgt tcttttttgc
      481 cttctttccc aatagatatt tttgagagaa tttagaatga taccggaatt ggataatcca
      541 ctattattaa actatatttt atctattagc ttttttcatg tgaattaaaa aataacagaa
      601 taaaaagccc caaaagttga caatgaggtg gatgatgccc atcgatataa ataaatatta
      661 cagtttgatt gtaaagatgc cttgtccatc ggaaggaggg ccaactctaa atcttgcttt
      721 tggaaaggac actgcaaaaa gatggggggt agttttttta caacgaatta aaacccccaa
      781 tggattaggg acagtaatag gagaatacaa agataggtta tggatatggc ttgatgataa
      841 taggggtgtt tctcgctggg aagtgaaaga taatctgttc agtatgaaag gttttgaacc
      901 ggttaaaaag ccatcgatga aatcatatcc tgatgaggtc gaaaaatata ttgagaattt
      961 attccaatgt tctattaatg aacttgtaac gtttactcaa aatccttttc ttttaatttt
     1021 tggggaagaa agtaaacaag caattgaagc catagaaaaa aattgggggc tttggctaga
     1081 gtacacaacc acaaacttaa acacatggtc taattatttt accaaatatc ttcaagagca
     1141 ctcacagaac ccattggaga aaatgcagca atacggtgag cttacttctc gagtgactgg
     1201 tattcctaaa ataacaatta aagaatttaa tctctcttat gtcaaagaga ttaaagaagt
     1261 tgaagagcag atttttgagt tacagcaaca aaaatcgtca ttacttgaac aaaccactgc
     1321 aaaagaagat caagaacaga ttaaggggat gttcaaaaat ctagagcaag tactacacga
     1381 caaactagag caacttaata aattagaaga acaaaaccgt cgacaaaaaa tgttaacctc
     1441 tcagttaaac aaagtcctaa ctaatcaaca atttgctgaa tttaaccaac atgcgaaaag
     1501 gattgaattg actgtaaact ctttattggc aatcaagccg caattacaag acaagcactt
     1561 tatgaaaacc tatcaagcca tgttaactct gatggcacaa tacttatacg aacaagacct
     1621 tattgaaaaa cagagtgaag caaccgataa gactggcaaa gaagaagcag aggccaatct
     1681 ctcgcctgat ttatttacag gcttggtatt tgctatggta gcaggtgatt ccactatcaa
     1741 aaaagcctat tatttgcggt taataaatcg tttggataac aataataacg cagccaaaga
     1801 aatgcctgta acttttgatt tagagatttg ggcagtcagc aatcctcaac aaatgattaa
     1861 tttgtgccgg tttttattta ataactctaa attcaagcaa tttgaggagg gtttgtctta
     1921 taaagagtat cctttattta tttttgaaat tgtaaaatta aagatgagct ttatacttgc
     1981 ccttaatgag gtgcagaaaa acaacagcaa gttctctatc cctcaggaaa ttaaattcca
     2041 tgctcaaaaa actatagact tattggttga tttaatcctt gatgggaatg aagaaatagc
     2101 aatctgggca gagaaacaaa ttaaaggcaa taaaaatcca tttataaaaa actacagggt
     2161 ttatgcggca ttggctgagt tttatgctac cccaccccat gttaatgaag aaaaagggtt
     2221 gtttttttac aatgagggga aaacaagcac gaaagatcct gaagaaaata aacaagcaaa
     2281 attagtttcc attttgtatg aagcaattca tggcagcaca ggagaaatac ggcgagcagc
     2341 cgtggaatta ttaaaccaaa agcgtgaata ccattactta aaattagtag gccataaaaa
     2401 tcctgatgcg gcattgcttt gtttggacta ttgcttggca aataatcaac tagatgaggc
     2461 aaaacaatat attacccttg ctcgtaaggc tgatcgcgct aaagcggctt attttgaagc
     2521 cctgttagta gataaacaaa aaggggactt tatgcccttt ttcctagagg caattgagtt
     2581 tggttttgct catgcgggtt atgctctgag aaaaatgttg tcggtcttgc tggaaaaaaa
     2641 acaaattgaa gaaattaacg aacgatacct taatttatta aataagccat ttgttttgaa
     2701 tatacttact gttccagtga ttaaggatac tattatggct gtttacaaca gtactggaga
     2761 tactcaacaa caggaagaat ttagagaaaa atggatgttc aatttacttg ttgtggtgaa
     2821 aaacactgaa atagtgcaga aaacagacct ggtagttact attataacag agtgccgcga
     2881 gcttttgtct gatgagggat tgttagtggc attaagtatt ttatcaaaac aacgatattt
     2941 cgatgaacca ggtgatccat tcttgttaga tgctattgct caaattatta cagagcaaga
     3001 taaaaaaggt ccgaaacatt ttttcaactt gggcatatac gattttctta aaaataacac
     3061 gaaattagta gttcttttga tgaataattc ttcaagcaaa gagagactag ctcaatgtga
     3121 acggtttacc agctttatca agaaagaaca aattcgcatt gaagagtcgg ataaagtgaa
     3181 aaatcagcca tccctcgcta acctgggcct attcggtgat aataataatt taccggagga
     3241 aaagggtccc tcaccatcac ccatgggaac caaaaaaggt taagccgttg ttatttgcat
     3301 tctgatgttt cgagattttt tcattccttt catcagattg atgatggtaa aatcggaaag
     3361 agtacataat cagctcaaaa agatcaaata ttatcgttag gggggtgttt tcccactaga
     3421 ccttgcataa cttgtctctt tcattttatt gctgcgttgc aaatgttttt ttggtgctca
     3481 ttgagttcat gtaatccacc tttcaaaaag tctgtgtctt gacttaaagc ataataatca
     3541 ggtgatgcaa aaaatctatt gaggttataa gcggaaacgt caatatttat ctaatctaat
     3601 tcattgttaa ataaagataa tttgtgttag attaaaaaat ctattgaaca tcgctggtgt
     3661 atataaacct ttcttaaatg tcataatagg gggattaatg aaaaaaatat tgggaagcat
     3721 tggtcttgca gtagtcagca tttcactatt tgcgcatggg tctatggaag ttcctatttc
     3781 ccgaacctat caatgttata aggaaggccc ggaaagccct aaatcagcag cttgtaaagc
     3841 ggctgtccag gtaggcggaa cccaacctct gtacaattgg catgaagtta accaggcagc
     3901 ggctaatgac cgacatcgtg aactgattgc agacgggcaa ttatgcgccg ggggtagaga
     3961 tttttttaaa ggtttcaatc tggctcgcac cgattggaca accacggtag tgcatcctga
     4021 ttctaatggc cgctttcagt ttgtttatgt tgctactgct cctcataaaa ccaagtattt
     4081 taaattttat gtcactaagg acggatatga tttcaatacc cccttaaaat ggtccgattt
     4141 ggagactagc ccgttttgta caatcaccag cgtcacttta gcgaatggtc gttatcagat
     4201 ggattgccca ttgccagcga ataggacagg caaacgaatt ttttatgtta tttggcaacg
     4261 tgaggacagt ccagaggcat tctattcctg tagtgatgtc tttatagaca gtaccgcaca
     4321 ggcaccaacc tggtttgaat tgcagaattt ttacgggtcc ggtgatattg ccgccaacac
     4381 taagatcact ttgcgagttt ttaagcatga agtagaagtt gaaagcacta gcatcactgt
     4441 cactgaaagc aatcgtacag cggaacaatg gcctcttgct ttgggcgcag cggtcaataa
     4501 cagatcctca ctggtacgta ttggtcaact tgatccgcaa agtggccagg tcgttctggc
     4561 agccaatcag gccaataaga tataccttag cgatagcgac accagcagct accatgttct
     4621 tgttgatttt gcggaaccct ccggtaattc tgatctgatt tacccggatg gtattagcac
     4681 ctataaagca ggaaccattg ttctgggtcg tcttgatcgc aaatattatc agtgtaagcc
     4741 ctggccttat tctggttggt gttcacaagc gccagcctat tatgaacctg gcgtaggttt
     4801 ggcatggcga gaggcttgga ttttactggg ttaatgcgta aatcagggaa cccttgaggt
     4861 tccctttctt tattagttca acgtttgttc aagtaattct tatgcgtttg cacttatggc
     4921 aaattacatc atgctttaag aacccaaaag tgataatttt tattgcagat taaaagaaaa
     4981 taaccaatta actgtattcg attacatgga aatgttttac aatcatcaga atattcattc
     5041 aatttttaga ttccatactt cgagctcttt tagcatgttt gcagcatgtt ggtgtccatt
     5101 ttttcaaggt aacatcattg gctcttgttt tagagtagag tatttttatg cagagtgaaa
     5161 agtggtaagg aattagttac tgatcgcgct atgaaataag caggaaccaa aatgacaatt
     5221 atgagagtat ttctttcatt tcttttgcta ttttttaata gccttagttt tgcgcaatct
     5281 gagcttccac aattgtttct gtttttaggg ggagacagag caagcacatt tcaggagact
     5341 ttgcaaaatc cttgcattcg tggggtacaa atcatttatt cctggaggca attggagccg
     5401 caaaaagggg tttacgattt ttcgaaaatt gaggaagatt tgaacgacct cagtagaatc
     5461 gataaaaagc tgtttattca aatacaagac cgttcattta gcccagatgt atttcctgta
     5521 cctgactaca ttcgcatgga aaaagcatat cacgggggtg tggtacagca gtatgatttc
     5581 cccggagaag gaaaaccaat taccgcagga tgggtagctc gtacttggga ccctgctgta
     5641 agaaagcgct ttcagttatt attaaaaaaa ctggcatcaa aatttgatgg aaaaatttat
     5701 ggcattaatc ttcctgaaac cgcaatagat cttgatccta atcatctccc cgaagatttt
     5761 acctcagaca aatatttcta ttcggtcctt gataatatgg gttatttaaa aaaggtcttt
     5821 caaaaaacca aagtgattca gtatgtcaat tttttcccgg atgagtggaa taatgaccat
     5881 cactacatga gtagattatt ctcttttgcc aggagccatc acattggttt aggcggacct
     5941 gatgtggtgc cctataaaga atcacaaatg aaaaacagtt atcctttttt ccacaaattc
     6001 aagggggaga tagaagcagc catcgctatt caagaaccag attatactta taccaatcca
     6061 aagacaggcg atttctatcg ttttgatgac ttctattctt tttcgaaaga gtatttagga
     6121 gctttcattt tattttggaa tacggaagaa ccatttttct cagagcagct tttacctaaa
     6181 ttgaatgaca gttattttca atgcgataaa gtcaatgata aagcaaatac agctgatgcc
     6241 aattaagagg acgggaaccc cgttatttcc tttttgaggc ttattgctaa tttattaaga
     6301 tgggcacagg cttatatgct aaaatagatt caaataactt atatctttga ggtggccaat
     6361 gcttgtagag ttattatccc gcattcaatt cggttttagc attggttttc atattctatt
     6421 tccaacttta aaccttggcc ttgcggtttt tcttgttatc atggaagccc tgtggctgaa
     6481 aacaaaaaat cccgtttatc tcgaaatatg caagttctgg actaagattt ttgctttgac
     6541 ttttggtatg ggagttgtct ccggcattgt gttggcttat caaattggta ccaattttgg
     6601 acccttcatc actcagtttg gaaacgtcct gggggctttg tttgcttatg aaacgttgac
     6661 cgcttttttc ctggaagctg gctttttagg agtcatgctt tttggttgga aaagagttcc
     6721 tccagcactt cattttatcg ccaccctttt ggttaccata ggaacaaccg tatccgcttt
     6781 ttggatcatg tcagccaatt catggatgca ggcacccagc gggtatcaac tcattgaagg
     6841 taaatatgtt gtcgatagtt ggtgggcggt tgtttttaat cctaccttca ttcccagatt
     6901 cattcatatg ctgttagctt cttatgtaac gacttgtttt gtcatcatgg cggtatccgg
     6961 attttacttt ttaaggaaac aatctactgc aattgctaaa aaaagtttat ctttcagttt
     7021 gtgggcatcg ttgattttag ttcctttaca aataggagtg ggtgatgtcg taggtattaa
     7081 tgtgcatcat taccaaccac taaaaacagc tgctatggaa ggcatatggg aaactcaaaa
     7141 aggagcgccg cttttgttgt ttgctatccc ctcacagaca cagcaaaaaa atttttatga
     7201 agtgggaata ccaaaactgg caagtttgat caatacacat gagtggaacg gtgaaatgat
     7261 cggtttgagt tctgttggca atgaagagca gccgcgcatg gcccctgtat ttttttcctt
     7321 tcgtattatg gtgggtattg ggctcatcat gttatttacg gctatcgctg gttttatctt
     7381 gcgcttaaga ggaactcttt ttgaaaattc atggtttcat cggtggtgca ttgtaatggc
     7441 accactcggt tttattgcca gtatcgctgg atggttaacc gctgaacttg gacgacaacc
     7501 ctgggttgtc catggtcttt taaagacgag agactctgtt tctgcaatag gggttgaaga
     7561 agttattatt tcttttgtct tgctcattgt tgcctatgga gtggtctttg gattttatct
     7621 ctattatctg ctgaggctca tctctcatgg acctggaatt cttgaagagg atgaagtgga
     7681 acatcatgct tttcaatata tgaccgattt ccccaaggag aaaaaataat gttaccgttt
     7741 attttcgcta cacttcttgg gtttatcgtt ttgatgtatg tcattttaga tggttttgat
     7801 ttgggaattg gtattttatt tcctttcacc tcaagtgaga gcgaacgcga taaaatgatg
     7861 aactcgattg cacctgtttg ggatggcaat gaaacctggc tggtttttgg aggagccatg
     7921 ctttatggtg catttccaca agtttacggt ttgcttttgc ccatccttta tatgcctatc
     7981 atgcttatgc tgattgcatt gatatttcgt ggtgtgagtt ttgagtttcg ttttaaggcc
     8041 aagaggtcaa aaactttgtg gaattggtcg ttttcaatca gttcggttgc ggccactttt
     8101 ttgcaaggag ttattcttgg cgcttttgta caggggtttt ctattaatga atcttccatg
     8161 actatcaatg atccggactg gcttacccct tttagccttt gtaccggtat cgctttggtg
     8221 tgtgggtatg cgcttttggg ggctacctgg atgattatca aaagcacggg aagattgcag
     8281 cgtaaaatgg ttcattatgc cagaggcttg ttagtcttgg tcagcttttt cctgcttttc
     8341 gttagtattt ggacaccttt gcatagtgag gaagtgtttc atcgttggta tagttttccg
     8401 aatatgctac tactgagccc cttgcccttg atagccttaa tagctattta cctcgtatgg
     8461 cagaacttaa gttccggcag tgaatacaaa ccgtttattt acagtatcat tatattttta
     8521 tgctcctata taggaattgc aatcagcgtc tacccttacc tgattcctca tcaagtgact
     8581 ttctgggagg cggcagcacc tgattccaca cttgttttta tcttgatagg tgtcgctatc
     8641 atgctgccaa tccttcttgc ctataccctt tatgcttatt acctttttcg gggtaaatca
     8701 tcagaaaatt atcactagtt attttctggg cgtcgaatta tttttaagcc atttagggaa
     8761 aaacatgggg gtcacttttt gatactcgat gtaaagattg cctctggatt caatcgaacc
     8821 ttgttcagtc atgggggctg tgatttttgt catgattaaa tacagggtca atggagaaat
     8881 aatggctatc catccataag gagaggaaag ggcaaataag gtaaaggagc accataccag
     8941 ccattcataa aaataatttg gatgtctgca gtaacgccaa agtttttgat tgcagacttt
     9001 tccaggatag tttttcttaa aatcttgcaa ttggttgtcg gcaactgttt ccaaaattaa
     9061 ggccgtgaga aatataatca atgcgagccc atccaataga tttagtgttg tttgagtttc
     9121 tgaggaagaa aaataccagg gaatggaaac aaggcaaatc aatacgcctt gcaactgaaa
     9181 atttaaaaaa aatcccaaag gtttggcaag cttccaatcg ttgcttaaag caagatagcg
     9241 cttgtctatt tttttaaggc gtattcgtgt ccaccataaa taccctccaa gcctgattcc
     9301 ccaggtgagt aatgccaaga cgagcagtaa agagcgcaat gaaaattctt gattatttaa
     9361 ataaataagt ccggcgagtg ttaaaccaga agcccatccc acatcaacca ccgaaggatt
     9421 attggtgtaa cggtaccata gccaaatcaa gcacatatgt aaaaagatga tggcgatcac
     9481 aagtaaaatt atcatcttat tcatttccta tgcaggtaat taaataggta taaactcaaa
     9541 ggcaagaata gagaccaggt taaccctaaa gtaaggtaaa atacaacttc actgccgata
     9601 agggttgccg ctccaaattg tacccctagc caataggcaa agataataga gggaaacatg
     9661 actaaccccc aaagaaaata gtaagttaac caggaaccat acaaaacaac gagattaaat
     9721 ccgaaactta gccagagagc gaccatccaa agcggaggaa aatgagatcc aaagaaattg
     9781 gctttaaaat agatcatacc gctataaagc cagatggcat cagtgatcgc acctaacaag
     9841 gctagtccaa tggaaaaata gagggcatca cgccagggga gttgattaag tatctgtaca
     9901 ataatctgta ggcccatgat taacacggta aagattaatc ccagcaaagg atagccataa
     9961 gaggctaggt agatacaaaa tatccagcac agatagtacg acagataatg aactatatgc
    10021 acaggattaa taatcattac gctctctcag gcgacctgcg atagcaatgc atccttgacc
    10081 ggcatgtaaa ccaatcgcaa gagatacagg ctctatgtac gtgggtggtt tattgaatgc
    10141 ctgggttgtc atctcagcga gatgcaaagc ctggtttttg tcacccgcat gaataatgca
    10201 gtaatcctct aaaatgagtt gagcctcgtc tttcttttcc tgaaggaagt taattaattt
    10261 attacgtgct cttgaggctg aaaaacactt gcctaccata atgccttggc ctgctgaatc
    10321 aatggagact aagggtttta tattaaccca ctgggcgatt cgcccggata ttttattaac
    10381 ccgaccggaa cgaatcatcg attcgaattg gttcaccata acaaaaatat aagtgttttt
    10441 tatcgctttg ccgagtaatt tggctatggt atcgatgtca ttccctgagg caattagttg
    10501 ccccgcataa tgcaaaagca atccatgcgc cccagaattc gttttggtat ccaatacggt
    10561 gatattggtg tattttttgg ttgcagtaag gaaggcttca taagtgccac tcattttgct
    10621 ggatatcgat agaacaagaa catgatcata gtgtgaggca atttttgcca gtttttcctc
    10681 tataagattc ggattcatac aagaggtttt aggataagtt ctgaacgagt taagttgtgt
    10741 ataaaaatag ttggcctcaa aacaatgttt atccagtaaa tggtgctcgt caacatgaat
    10801 atttaaagga atttgatgga tttgatattc atcgattaaa tcctgaggca aatcggcgct
    10861 tgaatcggtg accaacccta tcttatattt tttcccaaac tgcagttcat gttgcctttg
    10921 catgtcatct actttagggt attgaatagt gtaatcctta tataaacgcg tgaaaatttc
    10981 acgaggatta ttggtatgaa catgaaatct ggtgatgcga tcattgcccg taacagaggc
    11041 gcactctcct tgttctttta aaaaatgtaa taatttattt ttatcaatag aggcggattt
    11101 gagtactgct tcagtacagt atcgatattc tgtcgtggta catgtcaact gggggtgctc
    11161 tgtgatagat aacggtgagt gggtgtttgc tgtatctgtg gtgtgtgatt gctgtaaaaa
    11221 ctgtgtaaac ccttcaacga aataataaaa tcctagggca ccagcatcca caacattggc
    11281 tttttgcaaa atatttaacg aatttttagt ttgttctact tctacggaga gtaaaggtag
    11341 caattccaac atagcttgag ctagcaagga gtcgggttgt tttatctcac acacggtagc
    11401 ccacttttga atgagcgtta tcatagtgcc ctgtacggga ttagttacga ctgtggcaat
    11461 ttctttacca acttgaacca tgattttgga aaagtcatta aaatagagct cttctttgag
    11521 gggtaaatgc ttggctaata agttaaagaa ttgagaaaaa ataatcccgg aatttccacg
    11581 tgcaccgata atgctcgcgt cagcaataga ctctagagtg cctcttaggt cagcttttac
    11641 tgatgaaaaa tagatgattg ccatgcatgt ggaggataaa ttatcccccg tgtctccatc
    11701 ggctaccgga aaaacattaa tggcgttgag tatttgttta tggcgaatca gcctatgaca
    11761 gccggctatt attgcagcat gaaatgttat accaattaac ttatctaatg gcatgggatg
    11821 tccgtataat gaatattgaa gtttccaagc taatccatca tagtaggtat ttttatacta
    11881 atgcaagaag aatgatatgg ctcgctacct ggtaattgct gcaagcagtg ctatcggaca
    11941 atccgtgaca acccttttaa aaaatcgtgg tgataccgtt tttaccacag cacgagataa
    12001 tcataagata agccctgatt ttcaactgga tgccactcat tttgatgcgg ttttagatgt
    12061 ttttcgccaa acaggacccc ttgatggcgt agtcaattgt gcgggttcac tacttctgaa
    12121 aaatgctcac agcaccagtt ttgatgaatt tcaagtcgta atcaatgcgt cactcactac
    12181 ttcttttgct accattcgag ctgctggctt aactatgaat caaggaggct ctgttgtact
    12241 gatatcatca gccgccgctt tggtaggttt ggccaatcat gaagccattg cggcggccaa
    12301 agcaggtatc attggtttgg ctcaatctgc tgcagccact tatgcttcaa acaatttaag
    12361 agtgaatgtc gtggctcctg gaatggtcaa tagcccgctg acctcatcgt tattaagcaa
    12421 ccagttagtt ttgaatgcat caaagggaat gcatgcttta gggcgaattg gtgttccgga
    12481 agatatcgcc cacgcaattg tgtttttgct taatccggac aacagctgga tcacagggca
    12541 agtgattgct gttgatggcg ggttaagccg agttcggccc aagatgaaaa tttaatgaaa
    12601 ctataattct tatgacgaca ctgtgtttta tattaggcga tcaactcaat gaaacaatcg
    12661 cctcacttgc ggcaattaat aaacagaagg acattgtatt tttatgtgaa gtggcagaag
    12721 aaacttctta tgtgcctcac cacccgaaaa aaatcgcgtt cttattttcg tcaatgcgtc
    12781 attttgcgca acaattgaaa aagaaaggtt atcgagtccg ctatacgaca ttcgatgatc
    12841 ctcgcaatca aggcagtttt gccaaagaat tgcttcgtgc cattgaagag gagcaggtgt
    12901 cagcaataag ccttactgaa cctggagagt ggcgtgttct gaaaatattt catggtttaa
    12961 aaagccaatt gaccattcct gtcactctac atgaagacaa tcggttttta tgcaaaatta
    13021 atgagttcag aaattgggct aaggaaaaaa aacagttacg gatggagttt ttttaccgga
    13081 tgatgcgcca aaaatatcac cttctggtcg ataataatgg gaaaccggtt ggcggcacat
    13141 ggaattatga tgctcaaaat cgtaaaaatg ccaatcacat cagttcattc cccaagcgtt
    13201 tagagcatac cagggatgtg ataactgatg aggttttggg cttggtttca gcgcgttttg
    13261 ccaagcactt tggtcagtgc tatcccttta atttggcagt gacccgcgag caagcattag
    13321 aagaagccaa ttattttatg gaacattttc tttgcaattt cggtgcgtat caggatgcca
    13381 tgctcaaaga tgaaatcagc ttatatcatt caaaactgtc ggtttaccta aatgccgggc
    13441 ttttgttgcc tctggaattg tgtcaaatgg cagagcaagc ctatttctca aagcaaatgc
    13501 ctctcaactc ggtagaaggg ttcatacgcc aaattttagg atggcgagaa tatgtgaggg
    13561 gtatttattg gctttttatg ccggattacg gcgagatgaa ctattttaat gcatgcaggc
    13621 cgttgccttc ctttttttgg ggagaggaaa cgggaatgtt ttgtattaag gaagtggtac
    13681 gtcagacctc gactgaagcc tattcccacc atattcagcg gttgatgata acaggtaatt
    13741 ttgccttgct tgccggcctg gatcccaaac aagtctgtga gtggtatctt gctgtttatg
    13801 ctgatgcgta tgaatgggtg gagttaccca atacattggg tatggctctt tatgcggatg
    13861 gcgggctgat ggccagtaaa ccgtatgccg ccagtgggaa atacattcac cgcatgagta
    13921 atttttgcca atcctgctat tataatccca atgatctttt gggtgaaaag gcatgtcctt
    13981 ttaatgcgct ctattggaat tttcttcacc aaaatcaaga aaaattaaaa gataaccctc
    14041 gccttcgtta tgcctatatg aattggcaaa aaatggattt tgataaacaa aagaagacta
    14101 tccataaagc acagcgaata ttggcagact tggattctgc caatctctga tgtcttattt
    14161 gatataactt gccacataga ttgttgctac cgaacaccaa gagcacagta ctatacccca
    14221 tagccaatca aggaatgcca taccgacagg aaaatcctta aaaatagcga ggcaggtaaa
    14281 atcataaatt ccataaataa tagcaccaag aagcgcacca tataatgcgg cataaggtag
    14341 cgatgtttta gccagcggta taacaaagac aataatactc aaggcaaaaa gcagataaac
    14401 taataaagca gaccaccata ttggctttaa ttgcccctct gaaagacgca gccactgttg
    14461 gtattggtca aaataaagat ttctggcgat gaacccaagc catatcatat ctgtcacaat
    14521 aaagataaaa aaggcaatcg caaaaacctt aagcgtccat ccattcattt tattccctta
    14581 attatgattt ttatccttct ggttttgtat tttacattca atcggattca ggtaatagag
    14641 cttcatttcc aaaatctatc atttaacaaa aagttaattt tatggctaat cgagataaat
    14701 gcttcttact ataaaaggat atcggtaatt accatacttg aatatggtgt ttgatatttg
    14761 tgcaatcatt ctcttaatga gccccatctt gggagcagct atttggcatg cgagagcatg
    14821 tttgggagtt attattttgc tttgtacttt gctcttaatt ttttcttaat gatcgttttt
    14881 tataatgcaa aggttatttt tattcaagtt tgtaaatatg tgaggttcct tatgaaattg
    14941 cttcggtttc atgaattaaa atcattgcca agcatggacg agaaagcatt agaattgttg
    15001 ataaaggttt taggcaacaa aggcattaga aaactaataa aatctgccga cggcaagcct
    15061 atttcacgtg aaataatgat tcatgagttt ggaatagatt gtcaaattct atttattacc
    15121 accgaggcgt ctcttaagcc aatcatcgtt cccactgaaa acaagatttc aggaggtggc
    15181 aaatcttatt gtgagcaatt taaagtttat gctttggatg atggaaaaac ttatttccta
    15241 aaatccgtta agatcaatgc tgagagtttg acagagttta ccaatgagac agacacctta
    15301 agcaaattgg gtcgcttggt aggcactttt tttaatgaac aaactcaggt gcattatatt
    15361 ctcacaactt ttataaaagg gattgattta tcccggtata aaaacgcgct tcctcttaat
    15421 attaatctaa aacatttttg ggaagttctc ggtattatga tttctgtatg ccatcaggtg
    15481 aaacaattcc atgaattagg cttaattcac cgcgatctta aacctggaaa tattatgctg
    15541 gatgcggata tgcagtgtca tttagttgat ttcggcagca gttcttctga taaagaacct
    15601 aaaccggtat catggggaac cgcaagctat ttagcaccag aacttaatgc acaagaggat
    15661 tttattgctt tctctcaggc tagcgatctt tttgctttgg cttattctct agatgaactt
    15721 tttaatccat tcaggcaggt taaatttgcg aaagtggata taggaattaa aaataagcat
    15781 cttgtgcttt tgcacgctga aatcgaggca tgtattactg ggctcatgtc aaatgaaaca
    15841 tcagtacgaa cactttattt ttctcgcatc ctgcaattac aaagagtccc tgagagtttc
    15901 aaatcgagac cagaagcatt tacctatatg attatgctgc tcactcaatg gaaaagctgt
    15961 tatgaagcac cggaaatgaa caaagagtta gatgaaatca ttgcagaaat aaaagtggct
    16021 tatgaaaacc atgaacaaga tgtcgtaaag attataacat tgcttgagca gttatctaaa
    16081 gcggacgggc tgcttaattc tcataaagcc ttgctctctg ttttgattaa atcgcttgct
    16141 aatgtccagc aacaagagct cggacaagac gacatcttgc cgcgtcgttt tgaatcagac
    16201 gttgtgagcc gcctgataaa aactccaaca gctaaaatga tggcagcgat taaacaagtt
    16261 tcagatgcta tcgtaaaaat cctggaacaa tatgaacatt cccctgccga atcttttgag
    16321 catgcggttt tacaagattt tctcgaacaa atggttcaat cggatattct ttttggtgcc
    16381 cccaaagaga aaattgagat ttccgatatt ataaaaatac tcaaggcaaa caggccggaa
    16441 gatttcgtac aaattcagca tatttctttt aaatttgccc aagttgcttt acgcgatctt
    16501 gccttgcatg acctgccaaa acatgagcca aaaggcgctt ttttagaaat attgaaaaaa
    16561 tatcaagcaa aatatgcgcc tgaagagaca tcactttttg agctctatca tcacatggca
    16621 ggtgttagag atcacaaccc atcgaaagta aaaaaagggg agggataccg ctttagagct
    16681 ttcatttgtg atgagctttt ttatggagat gaaattttta ctacggggga taatcgtggc
    16741 cgcgaaggca agcctaacca aagattacaa actaatcaag ttggtttaat gaagttcgaa
    16801 cattcagccc acaccaaagg actactgacg ttaaatggtc aatcctggta tgctgattgt
    16861 aagacccagc taccaaacta cgattcaatt cattatctct cagccctgaa aacggactgt
    16921 ccttatatta cggggccttc cgggatgact tcattattta tgaatatgat gtttcttctg
    16981 ctcaatccta aggatcaaga tgtcatcctc tcttacagcc ttggggtaat gacttatgta
    17041 gttggtgctg gctaccacag cattaaagaa attcttattc cgatggtcaa gtgcgtaggt
    17101 attgtgcctg attatccaca gcataaagga acagagtgtc ttacagcccc gcctttatat
    17161 aaccattact ttaaggcaat agaggagttt gataaagagt ttgctgaggt tcatgaaaaa
    17221 atttggcagg aataccttgc atatttccgt atgacttata tgcccgtttg tatgcgtagt
    17281 cattgcctgc cacatcaagt cccctcaatg gaggatataa gctcagaagt aaaagaaatg
    17341 cttgaaattg tgtctaagtc tgtgaaaaat tgcttagaag aacataaagt taagcgtact
    17401 ggcgatatgg ggttgtttct ttcaacacca tgtgggcaaa caaaggcgct tgaggtctta
    17461 agtcatgtct gtcaacaaca ggtagggcta accgcaattt tcaggcagat ccaggcgtat
    17521 tttaaaggaa cttttgagac agaagaagga ataattataa atagagaaat gcaacttaaa
    17581 tttattgctc atttctttga tgtattgaag gaaagcccaa cactgctttc acaattcaat
    17641 ttgaccttaa ggatagaaaa tacgattggt gtgcatcagt gcgaattggg aagctctaag
    17701 caaaaagagc tcttcctgga gattaagaag acgtccatcg cagcaaatga agagcagatg
    17761 gttgcaaatc atgaacccag gaaagaaaac cgcaacgtca tcattttgcc atattaacct
    17821 caaggaaggc gttctatgtt aagtaaagaa aaaattaacc cttttctaaa aaatacaaaa
    17881 cgccaaggca gcgataacct tgctgccatg gctgatccga catcattaaa aaacacgggt
    17941 gactaccgat gttttaattc aaaaccagag gcttacactt attttatttt tttattaaat
    18001 caatggcaga ccaattacat tgacgacaaa agagaagcga tagctaaagc cattgattca
    18061 ataaaaatgg cttatgaaaa tcatgagcaa gatactttgg tcgttcacaa aatgttacat
    18121 ggcttgagtc acttgcttga gcaggagcat gccgatgagt taaatgcgtt atgcttggtg
    18181 cctatcaaag acagtcaatc taatgaaaac aatattctgc cccggagatt tgaatcagag
    18241 ctggcttgcc gcttgataga atcaccaacg aaaagcatga tgcaagcaat tgatctggta
    18301 tctcaagcta taatcaattt aatcgaagag tatagtaaat tagactcgaa atcttccgaa
    18361 cgaactgcgc tgaatttttt tctgcaagag ttagagggtt ctgatataga gtttggggct
    18421 tttaaaaaaa ggccatctct ggaagaagtt attgctattt taaaggaaaa taatccgaag
    18481 aattttattc aaattcaatt tatatctttt atgtttgctc gcagtgtaat cggaccattt
    18541 ccattacgaa atttgccacc atttaagcca actggccttt ttgcccaagt tctggataaa
    18601 tatttacagg ctcactccga tttgacagaa gaagaggaag gcttttccta tcagcttatg
    18661 gcagctaaaa atgaggcgga agaatttaga accttcatca ctaaaaaatt attttaccag
    18721 gatgaacttt atacccaagg agaaaacaga gggcgtcaag ggcctcgtaa aacctactta
    18781 aaaaccaacc agttaggatt gatgaagctg gatcattcag cgcatagcgt ggggttaacc
    18841 gttattcctg aacaaatttg gtgtgcggat gctcaagcac aagaagccaa tcagaattcg
    18901 atatattaca agactgcact tacaaatgat tgtccttatg ttactggccc ttctggcatg
    18961 acttctatct atatgaacat gatgctgctg cttttaaatc ctcaaaatat cgaattaata
    19021 caagcttaca gccttggaat tatggcatat atcgtcggtg cgggttttca cagtgtcaac
    19081 gaaattctta ttcccctggt gaaatgcatt aatcttctgc ctaattatcc aagctacgag
    19141 gggcttgaat atttaactca tcctcctctt tatcatgaat actttaagca aattgcacaa
    19201 tttgattctg attttattca gttaagagat caagtatggg catactatct aaattatttt
    19261 aaatcgtgct atatgccctt atgtatgaga gatttctgcg aggctgaaca gcttgcaaat
    19321 tgccctgacc ctgctccaga agtaaaaata ttatgcggta ttgtgcttaa atcaattaag
    19381 gactgcatta attttcataa tcttaatagg catctggaca gcaggttttt aggtacgact
    19441 actgcggaca ttgatgctct taatcaattg aaggaggctt gcgcgagtca atcttcaatt
    19501 agcggtatta tgcgattatt gcaaaaatat ttttcagggg aaaatattgc tcgctcaaca
    19561 gcgatgcata aatttgaaac tcgttcttat atccgttttt tccttgatgc tttaaaagat
    19621 aacccgcaaa tcatatctca tatcaatgag aaaatgaaat tggatcctcc attagtaatt
    19681 agtacaaagg ctgaaatttt ttcagatgat tttcgaatag agtgctttaa tttgcatcga
    19741 attctaaaaa gagaatacca ggtgaaagaa gattgtaaaa acactagcca gttaaagttg
    19801 taaaggaaag tggtttaaat atcccttaaa cttcattata atgaaaaata tatatccagg
    19861 tagggtaatt tgtgatatga aaaatgcagc aattatcaaa aatcgaattt tcttaaacct
    19921 agataaacct gttaagcgct ttttggcgag tgataaagca gatactccca tgacagcgga
    19981 attttatgcc gaaaaagatt acgaacagct ctttttagat tttttatccc aagctactgg
    20041 tagttatgat gagcaaatca gcttgctaat tgctgaattg gattcaggag cagatcgtgt
    20101 tgcgcaaaaa ttaatgttag ccctttactc gccatggcaa aagaatctat tgccgaaggc
    20161 aattaagacc attgcgaaca aatctgagga atatcccttg atgagtgatt tgctaattaa
    20221 attttgccag caacatgtcg gctctgttga tgctgttgat gattttggcg agacagccct
    20281 agccaaaatc ttaaaaaaag atcagcaaag gaagtcccct cttttatttt tagtcaagca
    20341 cggcgcaaaa cattgccaac tcacttctgc gttacaagat tctcttattg ttaataattc
    20401 ggatatttac aatgtcgcgg aagataatac tatggattgg atttccaact gccctcaacc
    20461 ctaattcttc agagggcaat attctgttgg ctcaaagatg attgcttaag gacttacgaa
    20521 aaacccaatc tctatgttaa aaatgttttt aattcggtca tttagtatat ctaaactccc
    20581 tcattaaaaa cattttttgc cttgaccttg gagtttttcg taagtcctgt acttatctcg
    20641 caaagtaaga tttagcacga tttcgctata gccaagtttg tatttggctt aagggaaaac
    20701 ttgggaacag ttaattgaga agccatatca cgccattgag ataggcggca aaaagcaacc
    20761 aaatgagata gggtagcaac aatatagcaa ggcttttttt cttatttgtt tggctaaaca
    20821 tcagaagccc agtgagcccc gccattacaa gaatccataa aaaactaaga ccagtccaat
    20881 gcagcacaaa aaaaagcggg gtccatgccc aattcatcag catctgtact gaatataaat
    20941 aaaacacaga tctcatctca gactcatttc gagagcacca taaaacccaa cccactattg
    21001 caagaagggc atataaaatc gaccaaacaa ttgaaaatac tggtccagga ggagttaaac
    21061 cggatttatt gagcccctca taccaagagg gaatattcgc ttgcgtcagc attcctaaaa
    21121 aaaaaccaat tgcttcaaag gtaatgatcc aggcaatcag ctctgtccaa ctttttttat
    21181 tcaatggggt ctctccaaat tttagttaat ctcttgtcaa tccattcctt tttttatttg
    21241 ctgatagtaa ctcaatgcct tagttctcgc ttcttggtga tcaatgatgg gtttgggata
    21301 ttttttccct aaaaaaatgg aactggcgtc agcatctgtc cagggttgat gaattgactg
    21361 actatttaat tgggcaagtt cggggatcca ttggcgtatg taaacgccat ccgggtcaaa
    21421 tttttggctt tgtaaaatag gattgaaaat acggaaataa ggtgctgcat ccgcaccgca
    21481 tcctgctacc cattgccagc tcgcgctgtt attcgccaga tccgcatcga ctagggtgtc
    21541 taaaaaccac tgtgcgcccg aacgccaatc aatcagtaaa tctttggtaa gaaatgatgc
    21601 gacaatcatg cgaacgcggt tgtgcatgta tcctgtggcc cataattctc tcattccagc
    21661 atcaatgata ggatacccag tcattccctt ttgccagcaa gttaataatt gctcatcatt
    21721 ttgccagggg aatgcatcaa actcctttct aaaattttcg cagtccagct tggggaagtg
    21781 gtagagcaga tagacagaaa actctctcca ccccagctct gataaaaaat gctctacgga
    21841 ggccagatca caggtatgtt ccagtttagc caactcgagt gctcttaaaa tcacccaagg
    21901 actgatttcc ccaaagtgca aatgaggtga caatcgagat gtcgcatttt tagctggaaa
    21961 atcgcgatcc cttttatatc cgctaaggtg atgaacaata aactcatcca gttttttttg
    22021 tgcgccctct tctccaggaa tccaatattc agaaaatcgt gctgcccaat taattgctgg
    22081 caataacttc catttgccaa tgtcatcact tgcaatttcg attccccttg ggcgtttagt
    22141 gagaataaaa ggcgagggga tattaagaat ttgtcgacat tgtttccagt aaggagtaaa
    22201 aaccttaaaa aaatccccat ttttattttt aattgtccac ggttcatgaa gtaaatttcc
    22261 attgaaactc tgcactttaa tttctctttc aaccaaagca agcttaattt ttttatcgcg
    22321 tgcaatgacc tgtggttcat agcagcgatt ccaatagact gattccacac catactgtgc
    22381 gactaattcc aaaataatct cttgcggaga tcctttgcgg agaacgaggc ttaaaccctg
    22441 ttgatttaac gatttgccca aagcaatgag actataatgg agccaccaag cttgagcttg
    22501 ccctaaaaca ctgcatttat catcataaat ataaagtgga attacaattt catgatggga
    22561 gcatgcttcg atgaacgcgg gattatcggt caatcttaaa tcttgacgga accacacaag
    22621 agcaatagtc attattttct tctattgatg gaaaaaccat aaaataacat gcttatgatt
    22681 ttttcttaac tagaggagtt ccttttaatt tctactaaac gcacttttat ttcaaaagat
    22741 aactgataag tgggagaagt agtatattga atagacctac taaaatcata gccaaactgg
    22801 caatggcgcc ttccgtattc cctattttat gggcctgagc ggttcctgcc gcatgggctc
    22861 ctactcctaa aagggcacct ctggcaagag ctgagttaaa aggcaagcgc gacaggatga
    22921 attcaccgag tatagctccc aatatccctg tgacaataac aaaaatcgca gtcaaatcag
    22981 gtgctgcacc aattcccctt gagatttcta tagcaaacgg tgtgctgata gagcgaggga
    23041 gaagacttaa gcgtaaatta tcatcaaggc caagaaggat tgccaatccc caactggatg
    23101 ctatggcagt gaaacttccc acaatcacgc caattaaaag cactggccaa tgctggcgaa
    23161 tgagggcacg tttttcataa atgggaatgg caaaggccac ggttgcagga ccaattaaca
    23221 agactagcca ttttgttcct cggaaatagt cctggtagtt tacatgcagt aaaagcacta
    23281 cgctggcaac cagtatcggt gttaaagcaa gtggcattag ccaccaaaag ggccatcttc
    23341 tatatagttt ttgcgtaata aaatacatac ctattgtgat aagtgaccag aaaaatgcct
    23401 ggatcatgga ttcagagaga atgctgcttg gcatgatgcg tcctccaacg gtagcaataa
    23461 tctacaacaa gggcagtgac tagcatcacc gtgattgtgc tgagcagaat aatgaagaga
    23521 attttaaggc ctaaaagacc gataaattcc cggtgctcca gtattgcaag gacgccaggg
    23581 ataaaaaaaa gtaacatatt ggcaaggagt aattcagctc cccgccttat acgatttaat
    23641 tttaagcaat tcgtcgccaa aagcagtaaa acaattccca agccaaggat tcctccggac
    23701 aaaggaagct tgaccagttt gagcaataac tcactagcta accaaaataa gccaaccaat
    23761 actatctgaa aaaatgaatt ttgctgaatt ttatttgcca tatatgtgct catggtggat
    23821 att
//
LOCUS       DACVWI010000030        23653 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.030, whole genome shotgun sequence.
ACCESSION   DACVWI010000030 DACVWI010000000
VERSION     DACVWI010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 23653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23653
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.030"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(69..437)
                     /locus_tag="JBH85_04495"
     CDS             complement(69..437)
                     /locus_tag="JBH85_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HAU0945454.1"
                     /translation="MSVEIQQASNTNPNITFSESAIKHLVTYLEKNPGNKGVRLSVKK
                     TGCSGLSYVVDYVKEPSEGDMIASLSKDYLVCVDKTSYPFLKNMQVDYVKQGLNYKFI
                     FNNPNQTGQCGCGESFTVSQ"
     gene            complement(442..825)
                     /locus_tag="JBH85_04500"
     CDS             complement(442..825)
                     /locus_tag="JBH85_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945455.1"
                     /translation="MMYNKIVQDYFFQPQHIGKLDLNDPFVIGVQSQPINQLNTVHFY
                     IKCDGDKLISKARFKTNGNPYVIAAMEWICCQIEGKTLESLPLIDFQILINVLQITNN
                     QYPVAVQVEDIYKEALTLMRKKFER"
     gene            complement(822..1985)
                     /locus_tag="JBH85_04505"
     CDS             complement(822..1985)
                     /locus_tag="JBH85_04505"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HAU0945456.1"
                     /translation="MAIKPIYFDYMATTPVDPRVVEQMIKYLGPEGDFGNPASATHEY
                     GRVASMAVEQARSQIAETINASPQEIVFTSGATEADNLAILGAARFYKNKGMHLVTMS
                     TEHKAVLDSFHQLEKEGFQVTYLNPESDGLLDLEKLESALRLDTILVSVMHVNNEIGV
                     IQDIASIGELLRNRGIIFHVDAAQSAGKLPIDLSQLSVDLMSFSAHKNYGPKGVGALY
                     VRHKPRIRLQPLSYGGGHEGGLRSGTLPTHQIVGMGEAFAIAEADRIPEQTRILNLRK
                     QLWDGIRHLPAIKLNGHEHRRIAGNLNVSFVGLNGDSLLFALSELAISTTSACSSASI
                     QPSYVLRAIGLTDTEAQSTIRLSIGRFTSEVQIKKAIDIICTQVSRLHELSPL"
     gene            complement(1960..2733)
                     /gene="trmJ"
                     /locus_tag="JBH85_04510"
     CDS             complement(1960..2733)
                     /gene="trmJ"
                     /locus_tag="JBH85_04510"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HAU0945457.1"
                     /translation="MKLSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSFPD
                     LKAKEMAAGADDVLDAAVVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELIN
                     QQSGNTQVAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMK
                     LLSPSAQVALRNEEPATADEIEQFYEHLKEVFIEINFLKPSNPRRLMQRVRRLFNRIN
                     LEKMEVSILRGMLSQVQKSLEWARKDNRSDRIGNKTDLF"
     gene            2849..3634
                     /locus_tag="JBH85_04515"
     CDS             2849..3634
                     /locus_tag="JBH85_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HAU0945458.1"
                     /translation="MEPLLNIAVNAARQAGEIINRYVEQVDRLKITPKNSHEYFSEVD
                     IKAEQVIINTIHKAYPEHGILAEESGIQQSDSDTVWIIDPLDGTSNYLHGFPFYSVSI
                     ALKIKNRLEHGVIYDPLRHECFAASRGRGARLNDRRIRVSKQTQLNASLLGTGFHFRD
                     ATLAQRYLPTFEALIGKCAGVRRTGSAALDLAYVASGRLDGFWEFGLRPWDIAAGALL
                     VREAGGLISDVQGGEDFLNYGDVVAGTPKVFKSLLQTISPVLK"
     gene            complement(3747..4703)
                     /locus_tag="JBH85_04520"
     CDS             complement(3747..4703)
                     /locus_tag="JBH85_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HAU0945459.1"
                     /translation="MNNESSSNSNLDSQALLNQLVIDYLQERKRKRRWKWIIRAIILA
                     VLVYSSYKIVSVAKTTEASKDKEHIGLIDINGEIADSSSASADNFTKGIEKAYRSKGL
                     KALIVRINSPGGSPVQAEYIYNVLQYYKSLKPNIKTYAVCVDMCASAAYYVAVGADEI
                     YASPASMVGSIGVLYNGFGFVDALQKLGISRRLQTSGVNKAFLDPFSPTTEFQKEKLQ
                     TMLDIVHKQFITRVKEGRGNRLHVDDETFSGLFWTGEQALASGLIDGYASSGQLAREV
                     IKITDIVDYTYKQNVFDRLTKNLGTAMADELPVILGMKPGLR"
     gene            4792..7368
                     /gene="clpB"
                     /locus_tag="JBH85_04525"
     CDS             4792..7368
                     /gene="clpB"
                     /locus_tag="JBH85_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HAU0945460.1"
                     /translation="MRMDKLTSKFQMALADAQSLALGRDNGFIEPEHLMKALLDQQGG
                     SCRPLLSKAGVNIPLLRTLIDQALDKLPKVSGTGGDIHISNALNRLLNLTDKLSQQRK
                     DNFISSELFILAAINEDSNLAKILKQAGGDNKAIEKAIDELRGGETVNDPNAEEQRQA
                     LEKYTLDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKNKRLLALDMGALIAGAKYRGEFEERLKGVLNDLAKQEGQIILF
                     IDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQ
                     KVLVDEPSVEDTIAILRGLKERYEVHHGVEITDPALVAAATLSHRYISDRQLPDKAID
                     LIDEAASLIRMEIDSKPESMDKLERRLIQLKIEREALKKENDEASKKRLVDLQKSIDE
                     LEQNYSDLEEIWKAEKATMQGSTQIKEALEQAKLEMETARRAGDLSRMSELQYGRIPE
                     LEKRLSQVSSVDAMETKLVRNKVTEDEIAEVVSKWTGIPVSKMMEGEKEKLLKMEEAL
                     HSRLIGQNEAVDAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALASFLFD
                     TEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEESGYLTEAVRRRPYSVILLDEVEKA
                     HTDVFNILLQVMDDGRLTDGQGRTVDFRNTVIVMTSNLGSQLIQEMSSKFNYDEIKAA
                     VMDLVSQHFRPEFINRIDESVVFHSLTKEQIAKIAAIQINYLHHRLKQQNITIEVTSE
                     ALSHLAEAGFDPVYGARPLKRTIQQKLENPLAQSLLTGKFKSGDTIIVSYKDGVMEFY
                     KQ"
     gene            complement(7460..8770)
                     /locus_tag="JBH85_04530"
     CDS             complement(7460..8770)
                     /locus_tag="JBH85_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1751 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945461.1"
                     /translation="MTFTPPEFKILSVNTRNLETIFSTLLGRYKIITDPPVSEAVSSG
                     EIIRNTLETLLARTHKVVICKTDRETARDVFKQLSNELREVLKENNEEKNKQAILFLL
                     GALLHRYFRLIKEYDNFNSYIPYPSFLFSKPPSNVKDCRLFQAIRLALGLPEVMERNY
                     RINDLKILDVTTIVTALETFRDNMQLIVGKDEGKMPRYKSYPHFAADKNFETYLQEII
                     DEHKRRNPVVLNQFKAINFIQSLVKQIEEEQRQIEEALTHLGKFLPKTCSDFKTISLE
                     LMEEQIKAQIESNVLQEKIIDLLYTGHIQENFSTMDCGSFIEAMKNCNSSLARYRALG
                     GYCLLLQNEGVKEQLRFCIHQALGVEINPNELTDKDMLDAIRLLKTYFEANPKVELNF
                     DFFNGKGSMNTFILQTELALAKKVQTVNKAQEDNSETRTTSLFV"
     gene            complement(8783..9430)
                     /locus_tag="JBH85_04535"
     CDS             complement(8783..9430)
                     /locus_tag="JBH85_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1752 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945462.1"
                     /translation="MRFLRVGPCGRETMLEFAEFQQNALKLTDQLKKRSIPSLGCFCF
                     FSVILPNTAAIEDTHTIKLIAYSLDSENDDDLIAYLKGVTTYSAVTPKNINEFKKKVL
                     TGIYLMMWSHYSSTVSNLMNSTLVELFQRDLQVSSPQKMSDTLFDASLEALSQYCSFA
                     YQNRNERIYDNLIRRLGKTVQADIHALRHSREKQETSFYDIYKGIMRTLGLNSVF"
     gene            complement(9723..11090)
                     /gene="mpl"
                     /locus_tag="JBH85_04540"
     CDS             complement(9723..11090)
                     /gene="mpl"
                     /locus_tag="JBH85_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HAU0945463.1"
                     /translation="MMTHLHILGVSGTFMSALALLARDAGYRVTGSDANCYPPISDLL
                     AAKGISWTEGYDDSTLALQSDMVIVGNAIKRGMPVLEAVMESGKPYMSGPQWLAENIL
                     SKYQVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLGKGRWFVIE
                     ADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYLLRTIPKSGV
                     AIKPRDDKALNEVLSRGQFSRIETLALSGEAEWVAELIDDSGSQFKILHNGGVVAEVS
                     WPLIGQFNVENGLAAIAATWNAGVNPEVAAKALEQFSPVKRRLEVRSNRHGITVYDDF
                     AHHPTAITKTIDALKRSGRHQRIFAVMEFASYTMRTGVHAAEMAHALAPVDGAYVLEP
                     QDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVREGDAVLVMSNRGFNGIHQQLIDSI
                     DKLFM"
     gene            complement(11092..11712)
                     /locus_tag="JBH85_04545"
     CDS             complement(11092..11712)
                     /locus_tag="JBH85_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945464.1"
                     /translation="MEEYKIFCLVQRVLKPKENNQKIIMNTLKLLFSYYWRLSLLKET
                     PENSPYSVFLLVVMCILFSIIMLIQWNIAELDFSRDWLLSLMMATSLILSFIFYTYVI
                     LKFQNLASRLVQTSTCLLSAYIIIHVLATPLFLIDTYLSAENLKTPIFLFIGMIYLFI
                     TLGLSIWQFVITAHIYKFALGTTPVKSVLAAFGLVAVNILTISFWR"
     gene            complement(11765..15586)
                     /locus_tag="JBH85_04550"
     CDS             complement(11765..15586)
                     /locus_tag="JBH85_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02099 family protein"
                     /protein_id="HAU0945465.1"
                     /translation="MTDNNLLANKFFKKIWMVLAVLIIVAAVFSSVFRALTPWAKQYK
                     GEVEQHLTSLLGQPVTVQTMETGWYWFEPVVKLKHIRIHDGHNKSIYLDRLIVGVNLF
                     KSLWNWRIQPGVLYIDDMHLVFREKDGHWCIEGISRNAMKDTDITPEKTREILDWLAQ
                     QEKLIVRHVSAHLHFNDGSLIPVNELNLSIVNKGGNYKIKGEARLEQTNATVFQLLGN
                     VQFDPSQIKNTNGRFYFSAINVLPAQWQNLLPKSSMQLEGGKGNVSLWVDLEKGNISS
                     IQAELRLKRLAWKLLNKKNSKLIQSFYANMGWKLDKQGWQFQADHMKLRVAGVTWPEN
                     QLSIRFNKNQNTYQIFTKSLIVESLLSEAINWPPAIQNVLQLKPHGILSDVQVLIKEN
                     QINYILTRFDQLGWRAKDNIPGVSNLSGVLNWQPTEGRLELDSENSTFDIKGYPAQKL
                     TIFNGAFDWKELNDGLRLSIERLVASQPELTISLEGAIDQLTQNSVGNIRLVGNFSGK
                     NLQKWMPYLPKKHMKAKLFAWLNNDIKRLGQATGKITINGMAKDFPFDNGNGEFSIVS
                     HVVGGDILITPEWRLIKDLEGYIKLKNRNLDIDIIDGDAQGTLLKQMNLRIDDIGKDR
                     ETLLIHGIVHGKAQQMLNFVMNSPLKKKLSALKILLIKGMLSLNLRLEIPLYPENDDN
                     LARGELTFENNIINIKHQMGDFSVRDVTGNLLFNEKGIQDSALTARAFGYPLNIKIQS
                     EKSPQPLTAISIEGECTVESLKKKWHLPIFSVLKGNILAKALLKITDDPNDLDNMKLS
                     SDLIGLAVDLPAPLGKTYKEKTPLQVNLDFNPQKTLRLRVNYNGRLSTDLLMQKQKGV
                     FKLKSGQIRLGSAQAVNQDHPGLGIAGTLDGFDLQAWKEVINRFSKENVNPSLLSLVN
                     IIDVKMGKLNFLNQQFDNMSLYAKKRPDNDWSINLKQKKVDADLTYHSATNSLSGFVK
                     YLHLSEIGSSKNNKDTPSHTTPGQIPNLNLRVDNFSIGKIQIGNITLKSHSTSEQWKI
                     DYCRIDSPYYQANFEGEWLQKGKFNQTKLQSKMYLKDLAKSLDRWAINPAVDAGKGYI
                     EFHGGWQGSLYDFSLSKLNGSMYLQLKNGRITHLSPETEEKLGLGKLLSILSLQTIPR
                     RLKLDFSDLSNDGYSFDIFKGNFNVNNGIMSTNNSYIDGPVAYASMKGDLDLVRRLYD
                     LDLNISPHITASLPVVATIAGGPIAGLAAWIANKIINQSMQKIAGYSYKISGPWDQPI
                     VQQLNIVKKLP"
     gene            complement(15576..16031)
                     /gene="fliJ"
                     /locus_tag="JBH85_04555"
     CDS             complement(15576..16031)
                     /gene="fliJ"
                     /locus_tag="JBH85_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HAU0945466.1"
                     /translation="MSDRLDRLIQLLKIKQEATQQAYIELVKAREQFNQNKARHEQLV
                     GYRQDYLQQLEVLGQQGSYVGPLRNRINFINHLDTALVQLNSYLSQLAKNRMKADLNY
                     KQAKTSEEGISKLIERVKRAELKQLQRIEQKETDEYAQKQWYSSLKHDR"
     gene            complement(16028..17380)
                     /gene="fliI"
                     /locus_tag="JBH85_04560"
     CDS             complement(16028..17380)
                     /gene="fliI"
                     /locus_tag="JBH85_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HAU0945467.1"
                     /translation="MMAIYQTQLHKILSGTRNKHHSGLLHCGRISRAIGLTIEAKGFN
                     QPVGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG
                     HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLT
                     VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGL
                     RRAVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALS
                     IGEAPATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARA
                     ILDGHVVLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKD
                     LILLGAYAKGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDESLSSLTKLISTLVGNDQ
                     "
     gene            complement(17380..18018)
                     /locus_tag="JBH85_04565"
     CDS             complement(17380..18018)
                     /locus_tag="JBH85_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HAU0945468.1"
                     /translation="MSNEFEPYNKEIKKIEFTTWKYQASKDAEHSPSDEEELINELEV
                     VKQEAFQKGYADGFQQAQEEINAIKAELSKWLDLIQKPVQILDEQLTQEIIQTIIWLS
                     QHCVAVELSVNPDKLNDLLNKIKGELPSLTGKKSISMHPDDVRWIKEVFSESNIPGLH
                     ELLVADPALNRGDFYLQGEHSELDGRIQTRFTTLFNEYINKENIIPMGVSQE"
     gene            complement(18160..19149)
                     /gene="fliG"
                     /locus_tag="JBH85_04570"
     CDS             complement(18160..19149)
                     /gene="fliG"
                     /locus_tag="JBH85_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HAU0945469.1"
                     /translation="MDGIERAAILLLSMGEKNASEVLKHLEPRQVQKVGMAMSTMNSV
                     SKAKMQNVLIDFISAIEDQTSLTVDTEHYLRTVLIEALGEEKAIPFIDRILVSNKDSG
                     LNKLKWLDGRLIAEVIRNEHPQIIATILIHLDSEQSAEVVSYFSAEKRAEVLLRMCNI
                     DTVKPEAISELGHVIEKQLSGQTTGKSSSVGGIKTVADVINFLDGAMEEEVLERIKDW
                     DEELSEKIRDKMFVFENIKDMDDRSVQTLLREVTSDQLKLALKGTTETTKEKIYSNMS
                     KRAADLLRDDIEVQGPVRVSDVERAQRDILAIARNLAEDGKISLGAKGGDELI"
     gene            complement(19152..20786)
                     /gene="fliF"
                     /locus_tag="JBH85_04575"
     CDS             complement(19152..20786)
                     /gene="fliF"
                     /locus_tag="JBH85_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body M-ring protein FliF"
                     /protein_id="HAU0945470.1"
                     /translation="MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSR
                     DPSYVPLYSQLNAQDSSEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGL
                     PRDTAIGHDLLGSSGGVFNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPR
                     ESAFVRDSQEPSASVFIDVYSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQL
                     LNEGSGYNLFSETERFLDYRQNLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYE
                     QTQELFNPELSALRSEQTMQESRNASNEASGVPGTLSNTPQPNSSLGQKNNPQQNATP
                     NNLPQQTSSDQMQAKDVRMQTTKNFELDKTISHTKNQPGTIKRLSVAVLVDNRPVMND
                     KTKKLEKKPLTKEEIEQIKLLVSDAIGLNVKRGDSLNVINSSFVKPDPIEAIPEEHFW
                     QKDSFWSVIKQIGGALFILAILFGVLRPMLKTLASNKDMDQATDNQDTGDFTLDGKIS
                     FRDVQDYETQLSLLRQVVDKEPKRVAQVVKSWVDRG"
     gene            complement(20958..21272)
                     /gene="fliE"
                     /locus_tag="JBH85_04580"
     CDS             complement(20958..21272)
                     /gene="fliE"
                     /locus_tag="JBH85_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HAU0945471.1"
                     /translation="MSDINTVNLINQMKTLAAQAEGIKPDSGLNHASFSSVFQQALNQ
                     VNELSQTADSLKTRFEIGDPNVSLGEVMIASQKSNLGFEATLRVRNKLVQAYQDIMNM
                     PV"
     gene            complement(21287..22648)
                     /locus_tag="JBH85_04585"
     CDS             complement(21287..22648)
                     /locus_tag="JBH85_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HAU0945472.1"
                     /translation="MPEQKRRVTLSNKGFSMSHVLIVEDDSVLREALAETMTISGHTY
                     ITAKDGKEALALLELHNPSVVLTDIRMDKLDGNQLLNEIQKKRPGLPVILMTAYGSVE
                     DAVTAIRNGAVDYLQKPFSAQVLIEKIKQYIKTDLSEEDNDPIARDPKSQALLTMALR
                     VAQSDVGVMISGESGTGKEVLAHFIHDHSYRSKQPFIAINCAAIPEQMLEATLFGYEK
                     GAFTGAYKSTPGKFEQAQGGTLLLDEVSEMSLGLQAKLLRVLQEKEVERIGSNKIINL
                     DVRIIATTNRQLKEEVQAGRFREDLYYRLNVFPLQWHPLRERTSDIIPLANYLIRKHC
                     QHKQPIVPVISPDAQKAMLSYSWPGNARELDNVIQRALVLQTQGIIEEEHLQITNSTT
                     MPSEEKTKGTSKNLQIHEYELIEKTLLENEGNRQKVAALLGVSERTLRYKLAKMREEG
                     YVV"
     gene            complement(22624..23646)
                     /locus_tag="JBH85_04590"
     CDS             complement(22624..23646)
                     /locus_tag="JBH85_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HAU0945473.1"
                     /translation="MHYSNYQTCAVKPQIELSEWDILSSLPTALVILNAQGKVVWLNP
                     SAEAMLGYGLIGSLWVDVIQKAFVPRADDGHEVSLADGRRVHVALSSLESLPGILITL
                     SDITASRDYEEAKENEKRLVSIGTMTAQLAHQIRTPLSSAILYTEHLNNLPSLDHRIK
                     NWIHRLQECHASIEQQIQDLLLFARGTSIEPKYIDMEFWCSQLMQRAQPYIESYAAVL
                     HVNNHLIARESSIHGESLIGAILNLIINALQSEATQIDLTLASMDDSGIQISVEDNGN
                     GMSEEVRAQAFSPFYTTKAQGTGLGLAVVFAVVKAHGGRVTLESTEGIGTQVTIYLPC
                     LNRNVG"
BASE COUNT         7117 a         4969 c         4060 g         7507 t
ORIGIN      
        1 tgcgactgcc cttcaagcta gccgcttatt gataatatta aaaaggcatc gtggactttc
       61 tgcttatttt actgacttac agtaaagctc tctccacaac cacattgccc cgtctgattg
      121 ggattattaa aaataaattt ataatttaaa ccttgtttca cataatcaac ttgcatattt
      181 ttaaggaatg gataacttgt tttatcaacg cataccagat aatctttaga taaagaagct
      241 atcatatctc cttctgaagg ttcttttacg taatccacta cataagataa tcccgagcaa
      301 cccgtctttt ttacagacaa tcttaccccc ttgtttcctg ggtttttctc cagataggtg
      361 accaggtgct ttattgccga ttcactgaaa gtgatgttgg ggttcgtatt gctcgcttgt
      421 tgtatttcta cactcattgc tttacctctc aaatttctta cgcatcaaag tcaatgcttc
      481 cttatatatg tcctctacct ggactgctac aggatactga ttatttgtta tctgtaatac
      541 attaattaga atctgaaaat ctattaatgg aagtgattcc aaagtcttac cttcaatctg
      601 gcaacatatc cattccattg ccgcaataac ataagggtta ccattcgttt taaatctggc
      661 tttggatatc agtttatctc cgtcacattt tatataaaaa tgtactgtat tcagttgatt
      721 aatcggttga ctttgtacac ctattacaaa aggatcattt aaatccagct taccaatatg
      781 ttgtggctga aaaaaataat cctgtacaat tttattatac atcataacgg cgataattcg
      841 tgcagccgac tcacttgtgt gcaaattata tcaattgcct tctttatttg cacctcggaa
      901 gtgaagcgtc ctatggataa acgaatagtt gattgcgcct ctgtatcagt caaaccaatt
      961 gcccttaaga cataagatgg ttgaatactg gcagaagaac aggcagaagt agttgatatc
     1021 gctaactcac ttaaagcaaa cagcaatgaa tctccattta atccaacaaa actcacattc
     1081 agatttccag cgatacgcct gtgctcatgt ccattcagtt taatagccgg taaatgtcgt
     1141 attccgtccc atagttgttt gcgtaaattt agaatacgcg tctgttcagg aattctatca
     1201 gcctctgcaa tagcaaaagc ctcccccatg ccgacaattt gatgggtagg taatgttcct
     1261 gagcgcaatc caccctcatg cccgccaccg taacttaaag gctgtaaacg aatccttggc
     1321 ttatgcctga catacagagc ccctacacct ttaggcccat aatttttatg agcagagaat
     1381 gacatcaaat caaccgaaag ctggctcaag tcgattggca atttaccagc actttgagcc
     1441 gcgtcaacat gaaatataat tcccctgttt cgtaataact caccaataga ggcaatatct
     1501 tggatgacac caatttcatt attaacatgc atgacagaaa ccagaatagt atctaacctg
     1561 agagcagatt ccagtttttc aagatccaac aaaccatctg attccggatt aaggtaggtg
     1621 acttgaaaac cttctttttc cagttggtga aaactgtcaa gcacagcttt gtgttcagtg
     1681 ctcatagtaa ccagatgcat tcctttattt ttataaaacc gtgcagctcc taaaatcgcc
     1741 aaattatccg cttctgtagc tcctgatgta aacactattt cttggggtga ggcattaata
     1801 gtttctgcaa tttgagagcg tgcctgctca actgccatag aggcaactct cccatactca
     1861 tgagttgctg atgcaggatt accaaaatcc ccttcagggc ctaaatattt tatcatttgc
     1921 tcaacaacac gaggatcaac gggtgttgtt gccatataat caaaataaat cggttttatt
     1981 gccaattcta tcgctcctat tgtctttcct tgcccactcc aatgatttct gaacctggct
     2041 aagcatacct cttaaaatac taacttccat tttttcaagg ttgattctat taaatagtcg
     2101 cctcactctt tgcattaatc tccttggatt agagggcttc aaaaaattaa tttcaataaa
     2161 aacttctttc agatgctcat aaaattgctc tatttcatca gctgtagcag gttcttcatt
     2221 gcgcagagct acttgagcac tcggtgataa taacttcata cgaagttcat aagcgataat
     2281 ttgtactgcc tgagccaaat ttaatgaact gtactcagga ttgcttggaa tattgatatg
     2341 gtagtgacat tttaacagct cttcattagt aaggcccgcg tgttctctac caaatacaat
     2401 ggccacttga gtattacctg attgttgatt tatcaattct gcacaggaag ctggaattaa
     2461 tccaggtaat gacagtccac ggggtctggc actcgtccct aaaatcaact gacatccaat
     2521 taaagcttcg tccagggtat ttgtaacaac tgctgcatcc agaacatcat cagctccagc
     2581 agccatttct tttgctttga gatcaggaaa tgactttgga ttaaccaggt acagagtact
     2641 tagccccatg gttttcatgg ctcttgccgt agagcctata ttgccaggat gggaagttga
     2701 aaccaaaaca attcgaatag aacttaactt cataaaaaat tattccaaat acaatagata
     2761 actatatcat aggatttatt aattgaactt ctctttgttt aaaaaaaatg tgttagaatt
     2821 gctgatttta tagctaaaga gtatatccat ggaaccactt ttaaatattg ctgtcaatgc
     2881 tgcgcgacag gctggtgaaa tcattaatcg ttatgtagag caagttgatc gtttaaaaat
     2941 aactcccaaa aacagccatg aatattttag tgaagtggac attaaagcgg agcaagttat
     3001 cattaatacg atacataaag cctacccaga gcatggaatt cttgccgaag aaagcggtat
     3061 tcagcaaagc gatagtgata cagtctggat cattgatcca ttggatggca cctcaaatta
     3121 tcttcatgga ttcccttttt attctgtatc catagccctg aaaattaaaa atcgtctgga
     3181 gcatggtgtt atttacgatc ccctgcgaca tgagtgtttt gctgcaagca gaggacgcgg
     3241 agcaaggcta aacgatagaa gaatccgtgt gtccaagcaa actcaactca atgcttctct
     3301 gttaggcaca ggttttcatt ttcgagatgc aactcttgca cagcgatatt taccaacctt
     3361 tgaagcattg attggaaaat gtgctggagt tagaagaaca ggttctgctg ctctcgactt
     3421 ggcttatgtt gcaagcggtc gtctggatgg cttctgggag tttgggttgc gcccatggga
     3481 tattgctgcg ggagccctgc tggttcgaga ggctggggga ttaataagtg atgtccaggg
     3541 tggagaagat ttcctgaatt atggcgacgt agtagcagga actcctaaag tatttaagtc
     3601 acttttgcaa accatatcac ccgttttaaa ataagttgtc aatttaagct catttaagac
     3661 gttcatttag gcttatcgat tttaaattat tttcgaatat ccgctctctc gaagctgaga
     3721 aagcggataa atactcctct ccactcttat cttaatcctg gcttcattcc taaaattact
     3781 ggcaactcat ctgccatcgc cgtgcccaaa tttttagtta ggcggtcaaa gacattttgc
     3841 ttgtaagtat agtcaactat atcagtaatt ttaattacct ctcgcgccaa ctgcccgcta
     3901 ctggcataac catcaattaa accactagcc aaggcttgct caccagtcca aaataacccg
     3961 gaaaaagtct catcatcaac atgtaatcta tttcctcttc cttctttgac acgagtaata
     4021 aattgcttat gaactatatc aagcatggtt tgtagctttt ctttctgaaa ttcagtcgtt
     4081 ggggaaaaag ggtccaggaa agctttattg actcctgaag tttgtaatct gcgtgaaata
     4141 ccaagcttct gcaatgcatc aacaaaacca aagccattat ataaaacacc tattgagcca
     4201 accatgcttg caggacttgc atagatttca tctgctccaa ctgcaacata atacgcagca
     4261 gaagcacaca tatcgacaca aacagcgtaa gttttaatgt ttggttttag gcttttgtaa
     4321 tattgtaaaa cattataaat atattcggcc tgtacaggac tgcctccagg gctatttatc
     4381 cgtacaatta atgcttttaa tcctttactt ctataagcct tctcaattcc tttagtaaaa
     4441 ttatcagcac ttgctgaact ggaatcagca atttcaccat taatatcaat taggccaata
     4501 tgctctttat ccttagatgc ttccgtagtt ttggcgactg aaacgatctt ataagatgaa
     4561 taaactaata cggccaggat aatagctctt ataatccatt tccatcgacg ttttcttttc
     4621 ctttcttgga gatagtcaat taccaattga ttaagcaaag cttgtgaatc caaattagaa
     4681 ttagaagatg actcattatt cataaaaaac tcttgaaaaa ttgtaaataa tacccatttt
     4741 atggcatgta aactagaatt aataccctaa aataactaga aaggtgttcc tatgcgaatg
     4801 gacaaactaa catcaaagtt tcaaatggca cttgcagatg cccaatccct ggctttaggt
     4861 agagacaatg gatttataga accagaacat ttaatgaagg ccttgcttga tcagcaaggt
     4921 ggaagttgca gacctcttct cagtaaagcg ggtgttaata taccactatt aagaacttta
     4981 attgaccaag ctctggataa actacctaaa gtatcaggca ccggaggaga tattcacata
     5041 tctaatgcat tgaatagact acttaacctg actgacaaat tatcgcaaca aagaaaagat
     5101 aactttattt caagcgagct ttttatatta gcagcgataa atgaggatag taaccttgca
     5161 aaaatactta aacaagccgg gggtgacaac aaagcaattg aaaaagcaat tgatgagtta
     5221 agaggtggag aaacggttaa tgatccaaat gcagaggaac agcgacaagc ccttgaaaaa
     5281 tatacactgg atctgactga acgtgccgag caaggaaaat tggatccagt tattggacga
     5341 gatgatgaaa tcagacgcac catccaggta ttgcaaagaa gaactaaaaa taaccctgta
     5401 ttaataggtg aacctggtgt tggtaaaaca gccatagtag aaggtttggc acaacgaatt
     5461 attaatggtg aagtacctga aggattaaag aataaacgct tactggcgct ggacatgggt
     5521 gccttgatcg caggtgcaaa atatcgtgga gagtttgaag aacgcttaaa aggggtgctt
     5581 aatgatttgg caaaacaaga gggtcaaatc atattattta ttgatgaatt acacactatg
     5641 gttggcgctg gcaaggctga aggagctatg gatgccggga atatgctcaa gccagcatta
     5701 gctagaggtg aattgcattg cattggggct acgacattag acgaataccg acaatacatt
     5761 gaaaaggatg ctgcccttga acgacgtttt caaaaagtac tggtcgatga acccagtgtg
     5821 gaagacacta tcgctatatt aaggggactt aaggaacgtt atgaagttca ccatggagtt
     5881 gaaattacag atcccgcttt ggttgctgca gcaacgctat cccatcgtta catcagcgac
     5941 cgtcaactac ctgataaagc cattgattta attgacgagg ccgccagctt aatccggatg
     6001 gaaattgatt caaaaccaga aagtatggat aaactggaac gacgcttgat tcagctaaaa
     6061 atcgagcgtg aagcattgaa aaaggaaaat gacgaagcat ctaaaaaaag acttgttgat
     6121 ttacaaaaaa gtatcgatga attagagcaa aattattcag acttagaaga aatttggaaa
     6181 gctgaaaaag cgaccatgca agggtccact caaatcaaag aggcacttga gcaagccaaa
     6241 ctggaaatgg aaactgcaag gagagcagga gatttaagtc gtatgtccga attacaatat
     6301 ggacgtatac ccgagttgga aaaaagatta agccaagtct cttccgttga tgctatggaa
     6361 acaaagttgg tacgcaataa agtcaccgaa gatgagatcg cagaagttgt ttcaaaatgg
     6421 acaggaatcc cagtatctaa aatgatggaa ggagaaaagg aaaaactgct gaaaatggaa
     6481 gaagctttgc acagtagact cattggccag aatgaagcgg tggatgctgt ttctaatgcc
     6541 ataagacggt cacgcgcagg cctgtctgat cctaatcgtc caattggttc atttcttttt
     6601 ctggggccaa ctggtgtggg aaaaactgaa ctatgtaaag cacttgcttc ttttcttttt
     6661 gatacggaag aggcgatggt gcgcattgat atgtctgaat ttatggaaaa acactctgtt
     6721 gcgcgcttaa tcggagcgcc tcctggctat gtaggatatg aggagagtgg ctatttaact
     6781 gaagcagtca gacgcagacc ctattctgtt atcttacttg atgaagtaga aaaagctcat
     6841 acagatgtat ttaatattct gcttcaagtg atggatgatg gccgtctaac agatggtcag
     6901 ggacgtactg ttgactttag gaataccgtt attgttatga cctctaatct gggatctcaa
     6961 ctcattcagg aaatgagcag caaatttaat tacgatgaga ttaaggctgc ggtaatggat
     7021 ttagtcagcc aacatttcag gcctgaattt atcaacagaa ttgatgaatc ggtggtattc
     7081 cattccctga caaaagaaca aattgcaaaa attgcagcaa tccagattaa ctatttacat
     7141 catcggctga aacaacaaaa tatcactatt gaagtcacaa gtgaggcttt atctcatttg
     7201 gctgaagcag gttttgaccc ggtctatggt gcccgccccc taaaacgtac tattcagcaa
     7261 aaattagaga atccactagc tcaatcatta ttgactggaa aatttaaatc cggggatacc
     7321 attattgtat cttataaaga tggagtaatg gaattttaca agcaatgagt atgcttatca
     7381 ttggaaaata acgcaggagt ccttatccag gactccaaaa ttacggggca atgtttcaag
     7441 accaagctgg gtaaacatat caaacaaata aagacgtagt acgagtctct gaattatctt
     7501 cctgggcttt gtttactgtt tgaacttttt tagctaaagc caattctgtt tgaagaataa
     7561 atgtattcat tgagcctttt ccattaaaaa aatcaaaatt aagctcaact ttaggattag
     7621 cttcaaaata tgttttaaga agcctgattg catcaagcat atccttatca gtcaactcat
     7681 tgggatttat ttccacaccc agagcctggt gaatgcaaaa ccgtaattgc tcctttacgc
     7741 cctcgttttg taataacaaa caataaccac ccaaagcccg atatcttgca agactgctat
     7801 tacaattttt cattgcttca ataaacgaac cacaatccat cgtgctaaaa ttttcctgaa
     7861 tatgtccggt atacaacaga tcaataattt tttcctgtaa aacgttcgat tcaatttgag
     7921 cttttatttg ctcttccatc agttccaagg atatggtttt aaaatcggaa caggtttttg
     7981 gcaagaattt gcctaaatga gtcaaagcct cttcaatttg acgttgctct tcttcaattt
     8041 gttttaccaa ggattgaatg aaatttatgg ccttgaattg atttaaaaca acagggttac
     8101 gtcttttgtg ttcatcaata atttcttgta aataggtttc aaaattcttg tctgctgcaa
     8161 aatgaggata gcttttatag cgcggcattt tcccctcatc cttccctaca atcaattgca
     8221 tattatcacg aaatgtttcc aaagcagtta caatcgttgt tacatcaaga attttcaagt
     8281 catttattct ataattcctc tccatcacct caggtaaacc taaagcgagt cttattgctt
     8341 gaaataatcg acagtctttt acattagatg gtggcttact aaataaaaat gatgggtaag
     8401 gaatatatga attaaagtta tcatactcct taatcagtct aaaatagcga tgaagcaaag
     8461 ctcctaataa aaacaggatg gcttgcttat ttttttcttc attattttct tttaaaactt
     8521 ctcgcaattc attacttaat tgtttaaaaa catctctggc agtttctcta tccgttttgc
     8581 aaatcacaac cttatgggtc cgagctaata aagtttccaa agtatttcta attatttcac
     8641 cactcgatac cgcttcagat acaggaggat cagtaataat tttatacctg cctagcaagg
     8701 tagagaatat tgtctctaag ttacgagtat ttacacttaa tattttgaac tcgggcggag
     8761 taaaagtcat agtgtctcct gtctaaaaca cgctattaag tcctaaagta cgcataattc
     8821 ctttataaat atcatagaat gaagtttcct gtttctccct ggaatgacgt aaggcatgaa
     8881 tatctgcttg caccgtctta cctaaacgtc gaattaagtt gtcataaatg cgttcattac
     8941 gattttgata ggcaaatgaa caatattgac ttaaagcctc taaactggca tcaaacaaag
     9001 tgtcactcat cttttgtggg gaactcactt gcaaatctct ttgaaatagc tcaaccaaag
     9061 tgctattcat taaattcgag acagtagagc tataatgtga ccacatcatt aaataaattc
     9121 cagttagtac cttttttttg aattcgttaa tattttttgg agttacagca gagtatgttg
     9181 tgacaccctt cagataagcg attaagtcat cgtcattctc gctatccagg ctataagcaa
     9241 tcaatttaat cgtatgagta tcttcaatag ccgctgtatt gggtaatatc actgaaaaaa
     9301 aacaaaaaca gcctaaggat ggtatgctgc gtttctttaa ttgatctgtt aatttcaatg
     9361 cattttgctg aaattcggca aactctagca tggtttccct cccacaaggg cccacccgca
     9421 agaaccgcag cgagtaatac gcctttgatg atcaagactc ttttaatttt tatatcaacc
     9481 tacacataat attgcaacta ttaatttaac tatttgccaa caaatatttc aaatcgccaa
     9541 ttttatttgg atgaagaaaa taaatatatt tttccgtagg ttattctaaa ctcaagagat
     9601 accttttact gtgatgatct ttttgtgttg gggctttgca aataatggga catgactttt
     9661 atttcacctg tttctcaata tcatgatatg ttctcaagac atttcagaat aaaaatgaat
     9721 cgttacataa aaagtttatc tatagaatcg atcaattgtt gatgaattcc attaaagcct
     9781 ctattactca ttaccaatac agcatcgcct tctcttactg ttttgataat ttctttaact
     9841 atctctccat tgtttttgca aattttatat ggacaagtcc aggagctaac aaaatctttt
     9901 aaattaaaat cctgaggctc caggacgtag gcaccatcaa caggagctaa agcatgagcc
     9961 atttctgcgg catgtacacc cgttctcata gtatatgaag caaactccat aacagcaaaa
    10021 atacgttgat gtcgtccact tctttttaaa gcatcaatag ttttagtaat tgcggttgga
    10081 tggtgggcaa aatcatcata aacggttatt ccatgtcgat tggaacgaac ttcaagcctt
    10141 cgtttcactg gagaaaactg ttctaaagcc ttggctgcaa cctcaggatt tactccagca
    10201 ttccaggtag cagcaattgc agccaaacca ttttctacat tgaattgccc tatcaacggc
    10261 caagatactt cagcaaccac tcccccatta tggagtattt taaattgtga accactatcg
    10321 tcaatcagtt cggcaaccca ttcggcttct ccagatagtg ccagtgtttc aatacgcgaa
    10381 aattgacctc gtgatagaac ttcattaaga gccttatcat ctcgaggttt gatagccaca
    10441 ccacttttgg gaattgttct taataaataa tgaaattgtt gttgaatagc tgccaagtcc
    10501 ggataaatat cggcatgatc aaattccaaa ttgtttaata ctgcaatatt tggtcgataa
    10561 tgcataaatt taggtcgttt atcaaaaaaa gcactatcgt actcatctgc ctctatgaca
    10621 aaccatctcc ctttgccaag gcaggcgctg gtattgaaat cactagagac gcccccaatg
    10681 agaaatcccg gattcattcc agcttgatcc aaaatccagg caatcattga agtggtagtc
    10741 gttttgccat gagttccagc taccgcaatc acctgatatt ttgataaaat attttcggca
    10801 agccattgag ggcctgacat atatggtttt cccgactcca taactgcttc aagaaccggc
    10861 attccccgct taatagcatt accgacaata accatgtcag attgcaatgc taaagtggaa
    10921 tcatcgtagc cttcagtcca tgaaatacct ttggcagcaa gcaaatcact gataggcgga
    10981 tagcaattgg catcgctgcc tgtcacccta tatcctgcgt cgcgggcgag caaagccaag
    11041 gcactcataa aggttccact tactcctagt atatgcaaat gtgtcatcat gtcatcgcca
    11101 aaaagaaata gttaaaatgt taacagcgac taaaccaaaa gcagctaaaa ctgattttac
    11161 cggtgtagtg cctaaagcaa atttataaat atgggctgta attacaaatt gccaaataga
    11221 aagccccaaa gtaatgaaca aatatatcat acctataaat aaaaaaatgg gggttttaag
    11281 attctccgca gacaaataag tgtcaattaa gaacaatggt gtcgccaaaa catgtataat
    11341 aatataggca ctcaataaac atgttgatgt ttgtacaagc ctggacgcaa gattttgaaa
    11401 ctttaaaata acataggtat agaatataaa agacaaaatc aggctcgttg ccatcattaa
    11461 acttaataac caatcgcgag aaaaatcaag ttcagcgata ttccattgaa tcagcattat
    11521 aatagagaac agaatacaca ttactacaag aagaaaaacg gaataaggag aattctccgg
    11581 ggtttccttc aatagactca gacgccagta ataagaaaaa agtaatttta gtgtattcat
    11641 aattattttt tgattatttt ctttaggctt aagtactctc tgaacaaggc agaatatttt
    11701 atattcctcc ataggcccta agtgacttca taactgttta ctaaataatc ttgtcttcct
    11761 ttagttaagg caatttcttc actatattaa gctgttgcac aataggctga tcccaggggc
    11821 cagaaatttt ataactatat cccgcaattt tttgcatgct ttgattaata attttatttg
    11881 caatccatgc agcaagacca gcaatcggac ctccagctat cgtagctaca acgggtaagc
    11941 tggcagtgat atgcggtgaa atgtttaaat ccaaatcata taatcgcctt accaaatcca
    12001 gatccccttt catactagca taagctactg ggccatcaat gtaactgtta ttggtgctca
    12061 taatgccatt attgacatta aagttgcctt taaatatatc aaaactgtag ccatcatttg
    12121 agagatcact aaaatcaagt tttaaccgtc ttggaatagt ttgcaaactc aatatgctta
    12181 ataacttccc taaaccaagt ttctcttcag tctccgggct caaatgagta atgcggccat
    12241 ttttcaactg taaatacatg gaaccattca acttggacag agaaaaatca tataaggaac
    12301 cttgccaacc cccatgaaac tctatatatc ccttccctgc atccaccgct ggattaatcg
    12361 cccaacgatc aagactcttg gccaaatctt tcaaatacat tttagactgt agctttgttt
    12421 gattaaactt ccctttctga agccattccc cttcaaaatt agcttgataa taaggtgagt
    12481 ctatcctgca ataatcaatc ttccactgtt ctgatgtaga atgactttta agggtgatat
    12541 tcccaatttg aatttttcca attgaaaaat tatcaactct taaattcaaa ttggggattt
    12601 gcccaggagt agtatgtgaa ggagtatctt tattattttt tgaggatccg atttcagata
    12661 aatgtaagta tttgacaaag ccactcagag aattggttgc cgaatggtag gttaaatccg
    12721 catcgacttt tttctgtttt aaattgattg accaatcatt atcagggcgt tttttcgcat
    12781 acaaagacat gttatcaaac tgctgattca aaaagtttag tttacccatt tttacatcaa
    12841 taatattaac caaactcaag agtgaggggt tcacattctc tttagagaat ctgtttatta
    12901 cctctttcca tgcctgcaaa tcaaagccgt ctaaagtacc agctataccg aggccaggat
    12961 ggtcctgatt tacagcttgc gcactaccta aacgtatttg acctgatttt aacttaaaca
    13021 cgcctttttg cttttgcatc aatagatccg tacttagtcg tccattgtaa ttaactctta
    13081 aacgaagagt cttttgtgga ttaaagtcca gattaacctg taagggggtt ttttctttat
    13141 atgtttttcc taaaggtgct ggaagatcaa ctgccaatcc aatcaaatcg gaactcaact
    13201 tcatattatc caaatcatta ggatcgtcgg taatttttaa taatgcctta gctaaaatat
    13261 tccctttgag tacagaaaaa ataggtaagt gccatttttt ctttagggat tctacagtgc
    13321 attcaccttc aattgatatt gcggttaatg gttgtggaga tttttccgat tgaattttaa
    13381 tattcagggg gtagccgaat gccctggcag ttaaggcact atcctggatg cctttttcat
    13441 taaacagtaa atttccagta acatccctta cagaaaaatc tcccatctga tgcttgatgt
    13501 tgattatatt attttcaaag gttaattcac ctcgggccag attatcatca ttctctggat
    13561 aaagaggtat ttccaaacgc aaattgagtg atagcatccc ctttattaat aatattttta
    13621 aagcagataa ttttttcttt aatggggaat tcataacaaa attgagcatt tgttgtgctt
    13681 tcccatgaac aattccatga attaataagg tttccctatc tttgccaata tcatcaatac
    13741 gcaaattcat ttgtttaaga agagtacctt gagcatcacc atcaatgata tcaatgtcaa
    13801 gatttctatt ttttagttta atataacctt ccaaatcttt aatcaatctc cattctggag
    13861 taattaaaat atctccgccg acaacatggc ttactataga aaactcccca ttgccattat
    13921 caaatggaaa atccttcgcc attccattaa tagttatctt gcctgttgct tgccctaaac
    13981 gtttgatgtc attatttaac caagcaaata acttggcttt catgtgtttt ttaggcaaat
    14041 aaggcatcca cttctgtaaa tttttcccag aaaaattacc cactaaacga atattgccta
    14101 cagaattttg ggtcagctga tcaatagcgc cttccagact aatagtcaat tcgggttgac
    14161 ttgcaaccaa gcgttcaata ctcaaccgca acccatcatt taactctttc caatcaaaag
    14221 caccattaaa aatggtcagt ttttgagcgg gataaccttt gatatcgaaa gttgaattct
    14281 ctgaatctaa ctcaaggcgt ccttccgtag gctgccaatt taaaacgccg gataaattac
    14341 tcactccagg aatattatcc tttgctctcc atcctaattg atcaaatcga gttaaaatat
    14401 aattaatttg attttctttg attaatacct gaacatcact caatattcca tgcggtttta
    14461 actgcagtac attttgaata gccggtggcc aattaattgc ttcggataat agtgattcta
    14521 caataaggga ttttgtaaag atttgatagg tattctgatt tttattaaaa cgaattgaca
    14581 attggttctc tggccaagtg acccctgcta ctcttagttt catatggtct gcctggaact
    14641 gccacccttg tttatccaat ttccagccca tgttggcata aaatgattgg atcaacttac
    14701 tatttttttt atttaataat ttccatgcca gacgcttaag tctcaattct gcctgaattg
    14761 atgaaatatt ccctttctcc aaatcaaccc ataatgaaac gtttccttta cctccctcca
    14821 gttgcattga ggattttggc aataaatttt gccattgtgc aggtaaaaca ttaatagctg
    14881 aaaaatagaa gcgtccattg gtgttcttaa tttgagaagg atcgaattgt acattcccta
    14941 gcagttggaa aacggttgca tttgtttgtt cgagtcttgc ttcccccttt atcttataat
    15001 ttcccccctt attaactatc gacaggttta attcgttaac agggattaat gacccgtcgt
    15061 taaaatgtaa gtgagcggaa acatgccgta caattaattt ttcctgctga gcgagccaat
    15121 ctaatatttc tctagttttt tcaggtgtaa tatcagtgtc tttcattgca ttacgtgaaa
    15181 ttccctcaat acaccaatgc ccgtcttttt cacgaaaaac caaatgcata tcatcaatat
    15241 aaagtacgcc aggttgaatg cgccaattcc atagggattt aaataaatta acaccgacaa
    15301 ttaacctatc cagataaatt gacttattat gaccatcatg aattcttata tgttttaatt
    15361 tgactactgg ttcaaaccag taccaccctg tttccatagt ttgaacagta acaggttgac
    15421 ccaaaagtga agtcaaatgc tgttccacct cccctttata ttgtttagcc cagggagtaa
    15481 gagcgcgaaa tacactggaa aagacagctg caacaattat aaggacggct aataccatcc
    15541 aaattttttt aaaaaattta tttgccaaaa ggttattatc ggtcatgttt taaactacta
    15601 taccattgct tttgtgcata ttcatcagtt tccttttgct caatacgctg taattgcttc
    15661 agttcagctc tttttacgcg ttcaattaac ttacttattc cttcttctga agtttttgct
    15721 tgcttataat ttaaatccgc cttcatcctg ttttttgcaa gttgactcaa gtaggagttt
    15781 aattgtacca aagcagtatc caaatgatta ataaaattaa ttcggttgcg taaaggccct
    15841 acgtaacttc cttgttgccc caatacttcc agttgctgta aataatcttg tctgtaacca
    15901 actaattgtt catgccttgc tttattttga ttaaattgct ctcttgcttt caccaactct
    15961 atataggcct gttgagtcgc ttcctgttta atttttaata actgaatcaa acgatctaat
    16021 ctgtcactca ttggtcattc cctaccaaag ttgaaatcag tttggttagc gatgataaac
    16081 tctcatcgta gcttacttgt tcatccattc cttgcgccag gtaatctttg agtttattca
    16141 ctgctaatat cgctttatcc accaggggat cgcttccttt tgcataggct cctaataaaa
    16201 ttaaatcctt gtttttttca taaacagaca ggtatttttt aaacaataac atatctttca
    16261 tatgttgttc agagacaaca ccctgcataa ctcggctaat agaagcttca agatctattg
    16321 caggatactg cccttgctct gcaagcgctc tgcttaatac aacatgacca tccaaaatag
    16381 ctcgtgccgc atctgctatg ggatcttgca aatcatctcc ctcagtcaag acagtataaa
    16441 atgccgtaat tgaaccaccc cccgaagtcc catttccagc tctttcaacc aatttaggca
    16501 atttggcaaa taccgatggc ggatatcctt ttgtagcagg agcctcacca atcgataacg
    16561 cgatttctct ttgtgcctgg gcaaaacggg ttaaagaatc aatcagcaag agaacatgtt
    16621 taccttgatc ccgaaaatac tcagcaatgc ttgttgcaac cttcgcgccg tgcaaacgca
    16681 tcaaagggct ttcatccgct ggagcggcaa ctacaaccgc tcgcctcaaa ccttccagac
    16741 ccaaattgca ctcaataaat tcttttactt cgcgcccacg ttctccaatt aatccaacca
    16801 caacaacatc agcttcagta aaacgcgtca tcatcccaag caaaactgat ttgccaactc
    16861 cacttccagc gaacaatcct atccgttgtc cgcggccaac agttaataag ccattaatag
    16921 cacgaatccc aacatccaat ggaacttcaa taggggctct ttttaaagga ttgatcactt
    16981 gccctatcaa tggataagtc tcaaccattt caccaggagg tccatcgtct ataaacattc
    17041 ccgaaccatt taatattctt cctaacaatt gatggccaac acttacttga gcaatgcgtc
    17101 cggtaggaat aattttcatt ccaggggcta taccttgtat atcaccaata gacattaaat
    17161 aaacactttc attactaaaa ccaacaactt ctgcctgaac agaatgttca tcattgattt
    17221 taaccaggca acgcgctcct acaggctgat taaatccctt tgcttctatg gttaaaccta
    17281 ttgctctgct gattctacca caatgtaaca gtccggaatg atgtttattc cttgttcctg
    17341 acaaaatttt atggagttgt gtttggtaaa tggccatcac tattcctgag aaacgcccat
    17401 tgggattata ttctctttat taatatattc attgaataag gtagtaaaac gagtttgaat
    17461 tcgaccatct aactcgctgt gttcaccttg taaataaaaa tctcctcgat ttaatgctgg
    17521 atcagccacc aataactcat gaagaccggg gatattactt tcagaaaata cttctttaat
    17581 ccatcgcaca tcatcaggat gcatgcttat agacttcttg ccagttaaag aaggtaactc
    17641 accttttatt ttatttaata aatcatttag cttatctgga ttaacagaaa gctcaacagc
    17701 aacacagtgt tgacttaacc aaatgatggt ttgaatgatt tcctgcgtca attgctcatc
    17761 taaaatttga acgggctttt gaattaaatc cagccatttg gagagctccg ctttaattgc
    17821 attaatttct tcttgtgctt gttgaaatcc atctgcataa cctttttgaa aagcttcctg
    17881 cttcactacc tccaattcat taatcaactc ttcttcatca gacggcgaat gttcagcatc
    17941 tttggaagcc tgatacttcc aagtggtaaa ttcaattttt tttatctctt tattatacgg
    18001 ctcaaattca tttgacatag ttatctaacc ttatcccggg cccaaatcat accaaaaatt
    18061 accacttagg acaaataaaa tacaattttg atacggactc ttgcttaatg atttttacta
    18121 ttttcataaa atgtctaaaa ctcatcctgg gaaaagtaac tagattaatt cgtctccgcc
    18181 ctttgctccc aggctaatct tgccatcttc agccagattt cttgctatgg ctaaaatatc
    18241 tcgctgggca cgctccacat cactgactct tacaggtcct tgcacctcga tatcatctct
    18301 gaggagatca gctgctcgct tagacatatt cgaatagatt ttttctttcg ttgtttcagt
    18361 agtacccttc aatgctaatt ttaattgatc agatgtcacc tctcgcaata aagtttgtac
    18421 acttctatca tccatgtctt tgatgttttc aaaaacaaac atcttatctc ttatcttttc
    18481 gcttaactcc tcatcccaat ccttaattct ctccagtacc tcttcttcca tagcgccatc
    18541 caaaaaatta atcacatctg ctacggtttt aattccgccg acagacgatg atttacctgt
    18601 ggtttggcca ctaagctgct tttcaatcac atgtccaagt tcagaaattg cttcaggttt
    18661 tactgtatca atattacaca ttcgtaataa cacttctgct cttttttctg cgctaaagta
    18721 actaaccact tcagcggact gctcactgtc cagatgaatt aatatagtgg caatgatttg
    18781 gggatgttca ttacgaatca cttcagctat cagacgtcca tccaaccatt tcagcttatt
    18841 caaaccactg tctttatttg ataccaatat tctatcaata aatggaattg ccttttcttc
    18901 acccaatgcc tcaatgagaa cggttctgag gtaatgctct gtatcaacgg ttaagctggt
    18961 ttgatcttcg attgcgctga taaagtcaat cagaacattc tgcattttcg ccttgctgac
    19021 gctattcatc gttgacatag ccattccaac tttttgtact tgcctgggct ctaaatgctt
    19081 taatacttct gaagcatttt tttctcccat gcttaacaat aaaatagctg ctcgctctat
    19141 tccgtccata attacccccg atcaacccat gatttcacta cttgtgcgac gcgtttgggc
    19201 tctttatcaa ccacttgacg aagcaaactc agctgagttt cataatcctg aacatctctg
    19261 aatgatattt ttccatctaa tgtaaagtct cctgtatcct gattatcagt ggcttgatcc
    19321 atgtctttat tacttgccaa tgtttttaac ataggtctta atacaccaaa taggattgcc
    19381 aatataaaaa gagccccgcc aatctgctta atcacagacc aaaaactgtc tttttgccaa
    19441 aaatgttctt ctggaattgc ttctatagga tctggcttta caaaactgct gttgatcaca
    19501 ttcaagctat ctcccctctt aacattcaat cctatggcat cagaaaccaa taactttatt
    19561 tgttcaattt cttctttagt tagcggtttc ttctccagct tcttggtttt atcattcatt
    19621 acaggtcgat tatctaccaa taccgcaacc gacaagcgtt ttattgttcc tggctgattt
    19681 ttagtatgac ttattgtttt gtccaattcg aaatttttag tggtttgcat gcgaacatcc
    19741 tttgcctgca tttgatctga cgatgtttgt tgaggtaagt tatttggcgt tgcattttgt
    19801 tgaggattat ttttttgccc aagagaacta tttggttgag gagtatttga taatgtccca
    19861 ggaaccccgc ttgcttcatt tgacgcatta cgactctctt gcatagtttg ttcgctgcgt
    19921 aaagcggaga gctccggatt gaacaattct tgagtttgtt catagctggt aaagtcaata
    19981 tctgcagata ctttggccct gacacggccg tatcccaata ttggggttaa gatatcctga
    20041 attttttgag cgtattgatg ttccaggttt tgtctgtaat caagaaaacg ctcagtctcc
    20101 gaaaagaggt tatatccgct accctcattt agcaattgtc cgtcttgatc aactactgtt
    20161 actcttcctg cgcttaaatt cggaatactt gatgctacta aattgacaat tgctgcaatg
    20221 gtatgtttct ttatttcaaa tcctgaatac acatcaataa atacagaagc actaggttct
    20281 tgtgagtctc ttacaaaggc tgactctctt ggaattgcca agtgtactct ggccgattta
    20341 atattattaa atttactgat cgtgcgtgct aattccgcct caagagcttg cctatatcgg
    20401 gcgttttcca taaattggct ggtattaaac accccaccac tgctgcctaa aaggtcatga
    20461 cctatggcag tatcgcgagg caatccttgt gcggccaatt tcaaacgcgc gctttgcagc
    20521 tcatcagcag gcaccatcag caagccatta ttcttgtcaa ttttgaaatc aatactattg
    20581 cgctctaaaa tagtcaaaat ctctgatgag tcctgtgcgt tgagctgact atataaagga
    20641 acatagcttg gatcacgaga ccatagaacc actgctacgc ctattgcaat actggccgcc
    20701 aatccaaaca acactccaat ttggcgtggt atagataagc ttgcaaattt tgtagctgct
    20761 actgaagcat tatcagccaa tgccatgatt tactcctgta atttttatcc ttttttcaga
    20821 atacttcact ctgagcttta aaactttatt gagaacattt gcaaactcat tatggcattc
    20881 aaaaacccca taaaaagctg ttattgagtt tgatcttgtt tatctgttga aaaagttcta
    20941 ctacccaaat catcgcacta aaccggcatg ttcataatat cctggtatgc ttgtaccaat
    21001 ttgtttctaa ctcttaatgt cgcctcaaac cctaaattgg atttttgact tgctatcatt
    21061 acttcaccca aggacacatt aggatcgcct atttcaaagc gggtctttaa actatctgct
    21121 gtttgtgata attcattgac ttgatttaat gcctgttgaa aaaccgaact gaaagaagcg
    21181 tgatttaaac cagaatccgg ttttatcccc tcagcctggg cggccagagt tttcatttga
    21241 ttaattaaat ttactgtatt aatatcgctc attctctcag cccctgttaa accacatacc
    21301 cttcttcacg catttttgcg agtttatagc gcaaagtcct ttcgctaacc cccaataacg
    21361 cagcaacttt ttgtctgttt ccttcatttt ctaataatgt tttttctatt aattcatact
    21421 catgtatctg taaattttta ctcgtaccct ttgtcttctc ttccgaaggc atggtagttg
    21481 aattcgtaat ctgcaaatgc tcttcttcga tgataccttg agtctgtaac accagagctc
    21541 tttgtataac attatccagc tctctcgcat tccctggcca tgaataggac aacattgcct
    21601 tttgcgcatc cgggctaatg actggaacta ttggttgttt atgctgacaa tgtttacgga
    21661 ttaaataatt cgctaatgga ataatatcac ttgttctctc tcttagtggg tgccattgca
    21721 gaggaaaaac attcaatcga tagtaaaggt cctctctaaa acgccctgcc tgaacctctt
    21781 cctttaattg cctgtttgtc gtcgcaataa tgcgcacatc aaggtttatt attttgtttg
    21841 aaccaatcct ttctacttct ttttcctgta aaactctaag taattttgcc tgcaaaccta
    21901 aggacatttc acttacttca tctaaaagta aagttccgcc ctgggcttgc tcaaacttgc
    21961 caggggttga tttgtatgct ccggtaaaag cacctttttc ataaccaaac agggttgctt
    22021 ccagcatttg ttcaggaatt gcagcacaat taattgcaat aaaaggttgt ttgcttcgat
    22081 aagaatgatc atggataaaa tgtgcgagca cttcctttcc agtaccgctt tctccactga
    22141 tcattactcc cacatcggat tgtgcgactc tcaaagccat tgtcagtaag gcttggcttt
    22201 taggatcccg tgcaatagga tcattatcct cttcactcag atcagttttt atatactgct
    22261 ttattttttc aattaagact tgcgcgctga agggcttttg caaataatca acagcgccat
    22321 tgcgaatcgc tgtaaccgca tcctctacag aaccataagc tgtcattaga ataaccggca
    22381 aaccaggcct ctttttttgt atttcattta ataactgatt tccatctaat ttatccattc
    22441 ttatgtcagt gagtacgaca cttggattat gtaattcaag aagtgctaat gcctctttac
    22501 cgtctttagc agtgatatag gtatggcctg agatcgtcat agtctcagcc aacgcttctc
    22561 ttaatactga atcatcttca actattaaaa catgactcat agaaaatcct ttgtttgata
    22621 aagttaccct acgtttctgt tcaggcaagg taaataaata gttacctgtg tccctatccc
    22681 ttcagtcgac tcaagagtca ctcgaccacc atgcgctttt actacagcaa aaaccactgc
    22741 taatccaagg ccggtacctt gtgcttttgt tgtatagaac ggcgaaaatg cttgtgccct
    22801 gacttcttca gacattccgt ttccattatc ctctactgat atttgtatac ctgaatcatc
    22861 catggatgca agtgttaaat caatttgggt tgcctcagat tgcagcgcat tgattatcag
    22921 atttaaaatt gctccaatca aagactctcc atgtatggag gattcacgag caataagatg
    22981 gttattaaca tgtaatacag ctgcataaga ctcgatgtat ggctgagctc tttgcattaa
    23041 ttgagagcac caaaactcca tatcgatata ctttggctct atggaggttc ctctggcaaa
    23101 taataataaa tcctgaattt gttgctctat actggcatga cattcttgca atctgtgaat
    23161 ccagttttta atgcgatgat ccaaacttgg gagattattt aaatgctcgg tatacaatat
    23221 ggcagaagac aaaggagttc taatctgatg agctaattgt gcggtcattg taccaataga
    23281 aaccaatcgt ttttcatttt ctttggcttc ttcataatcc ctgcttgcag taatgtcaga
    23341 caaagtaatc aatataccgg gtaaactctc taaagacgaa agggctacgt gcacacgcct
    23401 tccatcagcc agagacactt catgcccatc atcagctctt ggaacaaatg ctttttgaat
    23461 cacatctacc catagtgaac caatcagtcc ataaccaagc atcgcttcag ctgaaggatt
    23521 taaccacacc actttgcctt gggcattcaa aattaccaag gcggtaggca aactggacaa
    23581 aatgtcccat tcagataatt ctatctgtgg tttgactgca caagtttgat aatttgaata
    23641 atgcatgtta ttc
//
LOCUS       DACVWI010000031        23222 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.031, whole genome shotgun sequence.
ACCESSION   DACVWI010000031 DACVWI010000000
VERSION     DACVWI010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 23222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23222
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.031"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            27..1040
                     /locus_tag="JBH85_04595"
     CDS             27..1040
                     /locus_tag="JBH85_04595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAU0945474.1"
                     /translation="MLMDLVIAANYLSTLEKCLEQFGINHFLEKIGFDLIRVHDPDAY
                     LTQDEFNQVILEAYKLSNCPELGLVFGQNLSIVNHGFLGYAAMSSPTFGTAIQTVLSY
                     LNTRTNLLSLELRQFNTENSAYIKLLPHTKEMVLSRFITELAITHLIKMRNFLISCND
                     PLLKIELNYDEPPYAKYYQTIFQTKIIFNTEATRVWFKAEELNYPIHFADDVSYQLAK
                     RQLQELEKKMSLKEDMASKIKSILINQNLNHVSMDEIASRLCMTSRTLRRHLQRLDVT
                     YQELLDEVREQKAKTFLLNNNISMTEICFLLGFQDTSNFSKAFKRWTGITPTEYREKH
                     EVQ"
     gene            1172..2860
                     /locus_tag="JBH85_04600"
     CDS             1172..2860
                     /locus_tag="JBH85_04600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HAU0945475.1"
                     /translation="MGLKSGILGLSLLSLACGSFAMTETETIRVIIKYKQQPATIASL
                     KSQVIKSVQIPVKEMKPMANGAYSLIFDTSNSHAIVKSKEEDVTAKVLERLRKNPNVL
                     YAVKDRIGHFKPLPDPVINQELSQLLSHESQWDEFERPAGIRLESRPGLRDGAWAYTT
                     GKSRKPIVVAVLDTGIALNDSLVNNLVKDNEGNVFGWNFAGNNNDLSDETRSYHGTHV
                     AGTIAGYGDVMNGVGEDLKILTVKIPAENGMFYESAVVNSIYWAVGGDVPGVPKNIHP
                     AKVLNMSFGVDLEPGKEIDYCDEALQEALFFARKKGAVVAVAAGNDNVWEHYNAPAVC
                     NGTIKVASTGPEGLRSYFSNYGPSITLAAPGGDKRYGTSGGILSTVNPGGGYNSSGFD
                     FYQGTSMASPHVAGVAGLIFAVSNKALKPEQVEQILYVTTHEFGQSNDTNKSCVGKKP
                     CGHGILDADNAVQAALNAYDVLFSAPKMIALATHECGENRLKPGKNIINDSTATWIQA
                     KSSCETGVSYQKPRIEKAKDGKIYAYYGSVSYELDQSAYKECRVVGYDGVGCYL"
     gene            complement(3013..3294)
                     /locus_tag="JBH85_04605"
     CDS             complement(3013..3294)
                     /locus_tag="JBH85_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945476.1"
                     /translation="MAETIDDITIAFNENGVETTRELDKQILSKGAWTTIMFKYQDWD
                     NTKNDYGPVKYSIRRYQKRNNQYWQKSKFNISSTEQAKKIVDILNNWLE"
     gene            complement(3308..3922)
                     /locus_tag="JBH85_04610"
     CDS             complement(3308..3922)
                     /locus_tag="JBH85_04610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2845 domain-containing protein"
                     /protein_id="HAU0945477.1"
                     /translation="MEKAMKSILLMSLLLLIMPFRLMSAQSLYCPQNHGYINIGMSMD
                     QVIAACGQPLSKQESNQPILQKIPVQQLIYNNLGNSDGLYSGSLNVPEGTAFYGVWNI
                     PTGSSGVQLEVDILNNKVQDIRVNGGNTNAFSLCGNASIQIGDPATKVYGACGSPNLV
                     NNTYINQVVPTETKPQIWIYKPGPYQPAFSLTFVDGKLQSIGNN"
     gene            complement(3970..4545)
                     /locus_tag="JBH85_04615"
     CDS             complement(3970..4545)
                     /locus_tag="JBH85_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HAU0945478.1"
                     /translation="MAGLTAVGYFLLSLLFTIVIFSLWLRIAIRFFRISTINPFSQLI
                     HTITDPLVKPLYWIIKKPLQPGQKYDWIAFGVLILVEFFKIISLSLLMYHAIIPFLFI
                     FLYILVDLIIQPCEILFFAVLIRVIMSYVNPKWQHPLGDFLRVITTPILRLGRIIVPD
                     ISGFDFSPFIIMVILKIITLFLSASLPWKLL"
     gene            complement(4890..5678)
                     /locus_tag="JBH85_04620"
     CDS             complement(4890..5678)
                     /locus_tag="JBH85_04620"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HAU0945479.1"
                     /translation="MNISFIGYGNMAKAIACHLQKQNKYSLSAASPSLSAGISKENIR
                     THYDNKEVAKDADVIILAVKPAQMREVVNEINPFISSGCLLISVAAGLSLTWFAKYCK
                     KGQAVVRTMPNTPAIVGFAATSMIANEFVNEKQKKWAEQLFSSIGITDWVKDEEDMDT
                     LTALSGSGPAYVFLFLEAMINAGVQLGLEETVAKHFAIQTFSGSLQLAQHSQLSLTEL
                     RKKVTSPGGTTAAALEILHGDLDELIFSAMKAAKQKAHELGKVE"
     gene            complement(5675..6370)
                     /locus_tag="JBH85_04625"
     CDS             complement(5675..6370)
                     /locus_tag="JBH85_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HAU0945480.1"
                     /translation="MSISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIRE
                     AFQQGIRHFGENYFQEAQEKILALRDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRN
                     KTAKLLNQFRSEQLPPLNVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLM
                     TIPPQQNNMQTQYNLFLKLNQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRI
                     GRAIFGERKGKLL"
     gene            6534..7568
                     /locus_tag="JBH85_04630"
     CDS             6534..7568
                     /locus_tag="JBH85_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HAU0945481.1"
                     /translation="MDIAELLAFSVKNKSSDLHISAGMPPMIRVDGDLRKINLPPLEH
                     KDVIKIIYDIMNDRQRKEYEEFFETDFSFEIANLARFRVNAFNQSRGAAAVFRTIPSE
                     ILSMEDLGLPPIFKEMASFSRGLVLVTGPTGSGKSTTLAAVIDYINSSRYEHILTVED
                     PIEFVHQSKKCLVNQREVHKDTLSFNAALRSALREDPDIILVGELRDLETIRLAMTAA
                     ETGHLVFGTLHTNSATKTINRIIDVFPAEEKSMVRSMLSESLQAVVAQSLLKKNKGGR
                     VAALEIMMCTGAIRNLIREDKIAQMYSSIQTGQAKGMQTLDQHLTELVNKNIISKHTA
                     HEAALNKSLF"
     gene            complement(7898..8605)
                     /locus_tag="JBH85_04635"
     CDS             complement(7898..8605)
                     /locus_tag="JBH85_04635"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HAU0945482.1"
                     /translation="MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIV
                     EGVPRFLKGKNQGWITAEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACI
                     DLKVLGENTITLDCDVIQADGGTRTAAITGSCVAMRDAIHWMVQREKIKKMPAFNYVA
                     AVSVGIYRGQPVLDLDYAEDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSML
                     SLAEIGIPQLIEIQKNA"
     gene            8906..9772
                     /locus_tag="JBH85_04640"
     CDS             8906..9772
                     /locus_tag="JBH85_04640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HAU0945483.1"
                     /translation="MIHSMTAFSRIQKQFDVGDFCWEIRSVNHRYLDVSFRLPESFRF
                     LEAELRTLLRDKIHRGKLECHLKYKDTSCDNRSMLINIGTINALLDLSSKLSASHHLA
                     NDMTVSQVLSWPGVVEANLLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYVEDR
                     LQALRQEVMKSKSIVVSMSAKTKDKLLTRLHELQMDVPEARVEQEIALLLAKLDVSEE
                     LDRLETHIAEVSRTLNAEKVTGRRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVL
                     IEQMREQIQNFE"
     gene            9778..10407
                     /locus_tag="JBH85_04645"
     CDS             9778..10407
                     /locus_tag="JBH85_04645"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HAU0945484.1"
                     /translation="MVSDNSGNLYIVAAPSGGGKTSLVKKLIEMVGEIEVSVSHTTRP
                     MRPGEKEGVDYFFIDEKQFISMVNEGAFIEHAKVFNHWYGTSVAQINKRLQFGIDVVL
                     DIDWQGAEQIRHAYPDAVSVFIIPPSLDALKERLMNRRQDKDHVISERMTKAQDELGH
                     YPEFDYLIVNDDFEKAAMELQSIVIANRLRIEKQVNKQAKLLSFLLSSQ"
     gene            10458..10661
                     /gene="rpoZ"
                     /locus_tag="JBH85_04650"
     CDS             10458..10661
                     /gene="rpoZ"
                     /locus_tag="JBH85_04650"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003632439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HAU0945485.1"
                     /translation="MARVTVEDCLEHVKNRFELVMVATKRARQIAVRGDQPMVEWEND
                     KPTVVALREIAEGYVTADILDED"
     gene            10805..12952
                     /gene="spoT"
                     /locus_tag="JBH85_04655"
     CDS             10805..12952
                     /gene="spoT"
                     /locus_tag="JBH85_04655"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HAU0945486.1"
                     /translation="MLDTREYCVSYFKELDEELKCYLEQAQIEKCYQAYLVAEKAHHG
                     QMRRSGEPYITHPVAAALILARMRLDYQTIMATLLHDVVEDTSISKEELVNQFGEEVT
                     ALVDGVTKLTKIKFESKAEAQAENFRKMVLAMVKDIRVIIVKLADRLHNMRTLGSMPA
                     AKRRRIAIETLEIYAPIANRLGMHSIYIGLEDLGFQALYPMRYRAIKSAVEKSRGNRR
                     ELTQTIEKDLQHALSQLNIPYEQVFGRQKHLYSIYRKMKQKKASFTEITDVFAFRIIT
                     EDIDSCYRILGALHCTYKPVPQRFKDYIGIPKANGYQSLHTTLFGPFGVPLEVQIRTR
                     EMDKVADNGVAAHWIYKSSGLEVNEAQLRAREWVQSLLEMQRSTGSSLEFIENVKIDL
                     FPDEVYVFTPKGHIMELPKGATPVDFAYTVHSGVGNSCVAAKVNRRLVPLSIPLSNGQ
                     TVEIITAPGAHPNPAWLNFVVTGKARSNIRHFLKSQQHAESIVLGKRLLEQSLAELSS
                     DYAKVPPETLQALLSDLHYKTVDDLLYAIGIGNQMAMVIAKRLVVSQDANESDKGNKK
                     PLAIKGTEGMVVHFGECCQPIPGDNIVGKFQQGRGIIVHASDCTTLKTTRSNPEQFIA
                     LRWDEQVQGEYWVDITVDVANERGVLAALATAISEADSNIGNINVDPRDGRHNAVTFS
                     ISVRDRTHLARVMRRLRANKVVMRLYRKKQGEI"
     gene            12952..13338
                     /locus_tag="JBH85_04660"
     CDS             12952..13338
                     /locus_tag="JBH85_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HAU0945487.1"
                     /translation="MQPINTKLAPKAIGTYSQAIKSGEIVFLSGQIPLDPETMQICSD
                     DIKLQITQVLENLSAVCEEAGGSLANIVKLNVYLTDLSHFPLINEAMSRYFSEPYPAR
                     AAIEVSALPKGAKVEMDGILVLSESA"
     gene            13341..13832
                     /locus_tag="JBH85_04665"
     CDS             13341..13832
                     /locus_tag="JBH85_04665"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HAU0945488.1"
                     /translation="MSDDQYARTGRLMFLFVWIIFFIGLFLFFYYYDKPESTIFVASR
                     TEYVLSADNEGHYWIKGKINEYPVEFLVDTGATLVAIPQGLAKDLKITGRYPVTIETA
                     NGKVTGFLTRLQHLSFGEFHLQNVKAVIIPQNDDNTVLLGMNVLSQFHMIQQGKQLIL
                     KRQ"
     gene            13890..15746
                     /locus_tag="JBH85_04670"
     CDS             13890..15746
                     /locus_tag="JBH85_04670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAU0945489.1"
                     /translation="MMSIVSLNGASLILAGNCILDRADLQIQPQDRIALVGRNGAGKS
                     TLLKILQGELVLDGGQIQRSSGLRIAGLVQEVPSAEGESVYHFLVKSLGETGEVLSQF
                     HEFTKQGDMDKLAKCQQRMDNLNAWHLLPEIETMASRLGIDIHEQMSNLSGGMKRRVL
                     LGAALLAKPDLLLLDEPTNHLDVEAIEWLENYLKSFSGAVIVVTHDREFLSQIATSIL
                     EIDRGKLYLHHCNYEAYLDRRESIRLSEQKQNDLFDKRLAEEEAWIRTGIKARRTRNE
                     GRVRALKAMREQYKARRNQLGTVKSLNLDVSRSGALVVEANKVSYTINDKPIIKDFSL
                     LMTRGDKLGIIGPNGCGKTTLVRLLLGEIKPDAGTIKLGTGLQVAYFDQLRRHLLEDQ
                     TVMFNVGEGADYVTINGKQKHVASYLKEFLFSSDRFNQPVSSLSGGERNRLLLAKLFA
                     KPVNLLVMDEPTNDLDIETLELLEAVLADYPGTLILISHDRAFINQVVTSVLVYEGNG
                     KFNEFVGGYDDYKKHQLTRNEQQTKSPVSKRSSPEKAKNLSFNEQRELSKLPQQIEAV
                     EKKIEALHSQMASPEFYQQDAKLISEVTQLLAKEEALLNQYFARWEELEEKK"
     gene            15828..16241
                     /locus_tag="JBH85_04675"
     CDS             15828..16241
                     /locus_tag="JBH85_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945490.1"
                     /translation="MLLTLALVILFATIMVFFSQEFIRTFKKILAIRGAKLLIPLGIA
                     SWLIYNFDYLFIWVIYYIREVLQAVLAFLTRIMPFKPYSTSIALIILLTTVSVGPVLL
                     LDLIYRKRTYKGYAYPYLTSTLILIFCTLILLVVS"
     gene            16322..17371
                     /gene="queA"
                     /locus_tag="JBH85_04680"
     CDS             16322..17371
                     /gene="queA"
                     /locus_tag="JBH85_04680"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HAU0945491.1"
                     /translation="MYNCTNLFLGCSMNKQDFYFDLPSELIAQYPLANRSDSRLLIYN
                     RQTEEYGHYQFREIADFLQPGDLLVMNDSKVIPARLYGHKATGGKVELLVERITGDFT
                     FLAHIKASKSLKSNDLIYLDAGKRLEVLQRQDDLFLCKACENILDLLNDLGHIPLPPY
                     IAREDESLDKERYQTVYAKCAGSVAAPTAGLHFDDAVLSSIRARGVNIAYVTLHVGAG
                     TFRPVRCERIQDHKMHSEWFTVSPDLCTAVKAAKSMGNRVIAVGTTALRSLESAAMGG
                     ELIPCSRDTDIFIYPGYQFKVCDGLITNFHLPESTLVMLVSAFIGHQECMALYQEAID
                     KRYRFFSYGDASLLL"
     gene            17418..18251
                     /locus_tag="JBH85_04685"
     CDS             17418..18251
                     /locus_tag="JBH85_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="queuine tRNA-ribosyltransferase"
                     /protein_id="HAU0945492.1"
                     /translation="MLSTNQNFVPVLNTEAGLCLTAANWQEIKITIASCYLDLLLLKP
                     GYSLLKNITDFTKYLGWSGHLILNASRLVSDKNGMVILISPYDGSRIKLTNSELVHLI
                     LHIKPVAVLLPETIMNGFSGLWEQWDDTILPFLSAKQLETLQVPGKHGVYFNFSEAKY
                     NDDFLSQLQKWSEFPLYVSGPIGADLIEDLNRKKSILIESDEPAKNAMRGIVYGREGN
                     VDLTDESQAFNFQLIDENCSCPTCSAQLTRAYLHHLLANTPLLCQRFLIQHNAYYVQG
                     N"
     gene            18397..18732
                     /gene="yajC"
                     /locus_tag="JBH85_04690"
     CDS             18397..18732
                     /gene="yajC"
                     /locus_tag="JBH85_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HAU0945493.1"
                     /translation="MSFFISDALAAAGNAPAAQTDGTFSLIMIVAIFVLFYFMIIRPQ
                     SKRAKEHRELINRLKKGDEIVTSGGILAKVVSLDDQYIKVSPAEGIEINLQKGAVTAV
                     LPKGTIKSL"
     gene            18754..20610
                     /gene="secD"
                     /locus_tag="JBH85_04695"
     CDS             18754..20610
                     /gene="secD"
                     /locus_tag="JBH85_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HAU0945494.1"
                     /translation="MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTDED
                     TETIKNQVESILKNANMDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSLGSDYTVAL
                     NLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA
                     GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAE
                     LNSIRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGT
                     ATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVVLSGDSITSAVSSFD
                     QQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEE
                     RVISAPVIQNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKE
                     NIRRGLISLEVGMGLILVLMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGI
                     AGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAI
                     ILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI"
     gene            20623..21540
                     /gene="secF"
                     /locus_tag="JBH85_04700"
     CDS             20623..21540
                     /gene="secF"
                     /locus_tag="JBH85_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HAU0945495.1"
                     /translation="MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLD
                     FTGGTQIEISYSKAADLPLIRENLNKAGFKEAQVVSYGTSKDVLISIAPRADKQQSML
                     VDQVMEVLPGAVKQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSS
                     AVALIHDPVLILGVFALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRT
                     SPIDIMNISINQTLSRTIMTSVLTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSI
                     YVAGALAVAMGLDNKDFLPSHRREVDDRP"
     gene            complement(21713..22054)
                     /locus_tag="JBH85_04705"
     CDS             complement(21713..22054)
                     /locus_tag="JBH85_04705"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HAU0945496.1"
                     /translation="MTSDLSSKHCESCEGIGAALNSEQIKNLLPQLNTKWEVTEDNRI
                     IKRAFSFKNFYETMAFVNAIAWIANIENHHPDLEVGYNYCRVHFMTHALNGLTHNDFI
                     CAAKIDKLLVD"
     gene            complement(22091..23218)
                     /locus_tag="JBH85_04710"
     CDS             complement(22091..23218)
                     /locus_tag="JBH85_04710"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HAU0945497.1"
                     /translation="MSRNRVMSIDFQQLPHAGIRSLIPYVPGKSIEELAKEKGITDII
                     KLASNENPLGCSPLALSVIQTMSSHYIATYPSPWNHPLMSKLASYLKVKPEQLFLSNG
                     SDYLFNILLNCFALHTDRHILTHDYAFSTYAIQANSLQIPINSVPIGHNWEVNITDIV
                     NACNQQTGIIFIANPNNPTGVLIQQEEIKYLLEQIPKSTLLVLDEAYYEFAASQLTVN
                     SLDWLEEHPNLVVTRTFSKIYGMAGLRLGYAIANPSIINILKRVQLPFIVNQVALAAA
                     YAAIDDDDFIQSSLKMNNEGMLQLQAGFNELNIKYLPSSCNFLTFDCEEDSMALYNYL
                     LDNGIIVRPLHAYKMNNFIRVTIGTKEQNSRFLTALKNFYL"
BASE COUNT         7097 a         3958 c         4926 g         7241 t
ORIGIN      
        1 tcacttatca cttaaaaaag aaaagcctgt tgatggatct ggttatagcg gcaaattatc
       61 tttctactct ggaaaaatgt cttgaacaat ttgggattaa ccatttttta gaaaaaattg
      121 gctttgatct gataagagta catgatcctg atgcctactt aactcaggat gaatttaacc
      181 aggttatttt ggaagcttat aaattaagca attgtccgga attgggtttg gtttttggtc
      241 aaaacttatc tatagtcaat cacggttttc ttgggtatgc agcaatgagc agtcctacat
      301 ttggaactgc tatacaaact gtgctcagtt accttaatac acgaaccaat ttgttgtctc
      361 tggagttacg ccagtttaat actgaaaaca gtgcttatat caagttatta ccacacacaa
      421 aagaaatggt tttatcacgt tttataactg aattggcaat tactcatctt attaaaatga
      481 gaaatttttt gattagttgt aatgacccat tgctcaagat tgagttaaat tacgatgaac
      541 ctccttatgc aaaatattat caaacaattt ttcagactaa aattattttt aatacagagg
      601 ctactcgcgt ttggtttaaa gcggaggaac tgaattatcc catccatttt gctgacgatg
      661 tcagttatca actggcaaaa aggcaattgc aagaacttga aaaaaaaatg tcattaaaag
      721 aggatatggc aagcaagatt aaatctattt taatcaatca gaatttaaat cacgtcagca
      781 tggatgagat agccagtcga ttatgtatga cttctcgtac tctaagacgt catttgcaga
      841 gattggatgt gacttaccaa gagttgcttg atgaggtaag agaacaaaaa gcaaagacat
      901 ttttgctcaa taataatatt tccatgaccg agatctgttt tttattgggt tttcaagata
      961 catccaattt ttcaaaagca ttcaaacgat ggacaggaat cactcccaca gaatataggg
     1021 aaaaacatga agtccaatga ttgctcgatt ttaatttaat ctcatggctt attgattctt
     1081 gagttgatat ttattctcct gcatactgag gtggttttat ttttaaaaat tggtcaaggc
     1141 tacggattga ctttaaaaag gagattgaag tatgggtttg aaatcaggaa tattgggatt
     1201 aagtctttta tcgcttgctt gtggcagttt tgctatgact gaaactgaaa caatcagggt
     1261 tatcattaaa tataaacagc aacccgccac tattgcttca ctgaaatcac aagtcattaa
     1321 atctgttcaa atacccgtta aagaaatgaa gcctatggcc aatggcgctt attcgcttat
     1381 ttttgataca tcgaattccc atgctattgt caagtctaaa gaagaagatg ttacagccaa
     1441 agttttagaa cgtttgcgca aaaatcccaa tgtactttat gcagttaaag acagaatagg
     1501 acattttaag cctctccctg atccagtaat aaaccaggag ttaagtcaat tgttatccca
     1561 tgagagtcaa tgggatgaat tcgaaaggcc agcgggaatt cgtttggagt ccaggcctgg
     1621 tttaagagat ggcgcatggg catatactac aggaaagtct aggaagccga tagttgttgc
     1681 ggttttagat actgggattg cattgaatga cagtttggtg aataaccttg taaaagataa
     1741 cgaaggtaat gtatttggat ggaattttgc cgggaataac aatgatttat ctgatgaaac
     1801 cagatcttac catggcaccc atgttgccgg taccattgcc ggttatggcg atgtcatgaa
     1861 cggagttggt gaggatttaa aaattctgac tgttaaaatt cctgccgaaa atggtatgtt
     1921 ttatgaaagt gctgtggtga atagtatcta ttgggctgtt ggaggtgatg ttccgggagt
     1981 tcctaaaaat atacatccag ccaaggtatt aaatatgagt tttggtgtcg atttagagcc
     2041 tggaaaagaa attgattatt gcgacgaagc tttacaagag gctttattct ttgctcgcaa
     2101 gaaaggggct gtagtcgcgg ttgctgccgg aaatgataat gtttgggaac actataatgc
     2161 tcctgcagtg tgcaatggaa cgatcaaggt tgcttccacc ggaccagaag gattgcgttc
     2221 gtacttttca aattatgggc ccagtataac ccttgcagca ccgggaggtg ataagcgtta
     2281 tggcacttcg ggaggtattt tatctaccgt aaacccggga ggtggataca attcatcagg
     2341 ctttgatttt tatcaaggga cgagtatggc ttcgcctcat gtagccgggg tagcaggttt
     2401 aatttttgct gtcagtaata aggctttgaa acctgaacaa gttgaacaaa ttttatatgt
     2461 tactacgcat gagtttgggc aaagcaacga caccaataaa tcttgtgtcg gcaaaaaacc
     2521 ttgtggacat ggaatattgg atgcggataa tgctgtgcag gcagcattaa atgcttatga
     2581 tgtcttattc tcagcgccta aaatgattgc tctggcaacg catgaatgtg gagagaatag
     2641 attaaaacct ggtaaaaaca tcattaatga cagtactgcg acctggattc aagctaagtc
     2701 aagctgtgaa actggtgtaa gctatcagaa gccacgtatt gaaaaagcca aggatggaaa
     2761 gatttatgct tattatggtt ccgtaagcta tgaattggat caatcggctt ataaagaatg
     2821 tcgtgtcgtt ggatatgatg gcgtaggctg ttacttataa tatcaaatga aacttgattc
     2881 tcagttttaa gacgttttga tgagggaagt attcagagcc aatttattgg ttacgtatgg
     2941 aatccttctc tcatcaaatt aaaatccctg cattcgcgca ggtattaaaa ttttaacaaa
     3001 gacatcagaa aattactcaa gccaattatt taatatatca acaatttttt tggcttgttc
     3061 agtactcgaa atattgaatt tggatttttg ccaatattga ttgttacgtt tctgataacg
     3121 ccgtatagaa tattttacag gaccgtaatc attttttgtg ttatcccaat cctggtattt
     3181 aaacataata gtagtccatg ctcctttgga taggatttgt ttatcgagct ccctggttgt
     3241 ttccactcca ttttcgttaa aagcaattgt tatatcatct atggtttcag ccatttgtca
     3301 tacttcctca attatttccg atggattgta atttgccgtc gacaaaagtc aaggaaaagg
     3361 ctggttgata tggacctggt ttataaatcc agatttgtgg ttttgtctct gtaggaacca
     3421 cttggttaat gtacgtgtta ttgaccaggt tcggactgcc gcaagcgcca taaactttag
     3481 tggcaggatc tccgatttga atgcttgcgt tgccacacaa ggaaaaagcg ttagtattgc
     3541 cgccattcac tcgaatatcc tggactttat tattgagaat atcgacttcc aattgcacgc
     3601 cgctactacc tgtaggtata ttccatacgc cataaaaagc ggtaccttcc ggtacattta
     3661 atgatcctga atacaggcca tcggagtttc ccagattatt ataaattagt tgctgcacag
     3721 ggattttctg caaaataggc tgattggact cttgtttact cagtggttgc ccgcacgcag
     3781 caatgacctg atccatggac ataccgatat tgatataacc atgattctga gggcaataca
     3841 aagattgtgc gctcattaaa cggaatggca taattagcaa taataaactc ataagtaata
     3901 tcgatttcat agctttttcc attaatccgt atcaactaat agtatagttc tgtttgttta
     3961 tttttgcttt tataataact tccagggcaa agaagcgctt agaaacaggg taataatttt
     4021 taatatcacc atgataataa agggtgagaa atcaaaacct gaaatgtccg ggactataat
     4081 tctgcctagt cgtaaaattg gtgttgttat tacgcgcaag aaatcaccaa gcggatgttg
     4141 ccatttggga ttaacataac tcattattac tcgaatcaga acagcaaaaa ataatatttc
     4201 gcaaggttga attatcaaat caacaagtat gtagagaaaa ataaagagaa atggaatgat
     4261 tgcatgatac atcagtaaac tcagtgaaat tattttaaaa aattccacca ggattaaaac
     4321 tccaaatgct atccagtcgt atttttgtcc tggttgcaat ggctttttta taatccaata
     4381 caagggtttc actagaggat cagtaatggt atggattaat tgagagaatg gattaatagt
     4441 actgatacga aaaaaacgta tagcgattct aagccacaaa ctgaaaataa cgatagtaaa
     4501 taataaggat aataaaaaat acccgacagc agttaaacca gccattgttt tacctcttta
     4561 gattgtattc atcaataaag ccagcaaatt tattcatatg atttagaaat gaattgctta
     4621 agcagtttat taaccttcta tcataacgcg agcaaacctt gttccacaat gattgtttgc
     4681 ttgaacagtt caagaattaa tactaacaga atgttcccaa tatctttctc aaaaagtatt
     4741 tttagttcag ttgtttagtt tatcttaatt ccctcattaa aaacattttt tgccttgacc
     4801 ttggggtttt tgtaaatcct gactgacatt aaaataaaag aaatcaacag aggacttctt
     4861 gcgatagaat ttttgttaac tcaaaagtgt tattcaactt ttcctaattc atgagctttt
     4921 tgtttcgcag ctttcatagc agaaaaaatg agctcatcca aatctccatg caggatttcc
     4981 aaagctgcgg ctgttgtacc tcccggagaa gttacttttt ttctcagttc agtcaaactt
     5041 aactggctat gttgagctaa ttgaagcgat cctgaaaatg tctgtatggc aaagtgtttg
     5101 gcaaccgttt cttccaggcc caattggacc cctgcattaa tcatcgcttc aagaaacaaa
     5161 aatacgtaag cagggccact gccagaaagg gctgtcaggg tgtccatgtc ttcttcatct
     5221 ttaacccaat cagtaatccc aatgcttgaa aataattgtt ctgcccattt tttttgtttc
     5281 tcgtttacaa attcatttgc aatcattgat gttgctgcaa atccaactat agccggggta
     5341 ttaggcatgg ttcttacgac cgcttgtcct tttttacaat atttggcaaa ccaggtcagg
     5401 gacaatccgg ctgccactga gattagaagg caacctgatg aaataaaagg gttaatctca
     5461 ttgactacct cacgcatttg tgcgggtttt actgccaata taatgacgtc tgcgtcttta
     5521 gccacttctt tattatcgta atgagtgcga atattttctt tactaatgcc cgcagataag
     5581 gatggtgagg cagctgacaa tgagtattta ttttgctttt gtaagtggca ggcaattgct
     5641 ttcgccatat tcccataacc aataaaactg atattcataa taatttacct tttcgttcgc
     5701 caaaaattgc tcgtccaatt cgaactatgg tcgaacctgc tttaattgcc ggaaccaaat
     5761 catcactcat acccattgat aaagtatcca tttttaaatg aagtgcctta ttgatggatt
     5821 ccttgagttg attgagttta aggaataaat tgtactgtgt ttgcatgttg ttttgctgag
     5881 gagggattgt catcagtccc cttagctgca aattaggcaa ttgctttact tcgagagcaa
     5941 ggtcgatggc atgttctgga ggaatgcctg attttgtagt ttctccagtc aaattaattt
     6001 gtaaacagac attgagcggt ggtagttgct cagatctgaa ctggttaaga agtttggctg
     6061 ttttatttcg gtcaatgctg tgaacccaat taaaatattt cgctattcct ttggttttat
     6121 tactttggat aggccctata aaatgccaac agataggcag atctcttaat gccaatattt
     6181 tttcctgggc ttcttgaaaa tagttttcac caaagtgtct tatcccttgt tggaatgctt
     6241 ctctgattaa ttcggggctt tgttctttac taacagccaa taataagacg ctgttcggtt
     6301 gcctgttact ggatgattct gtctgggtta tcagttctct tactttgttt atgttctgac
     6361 taatgctcat attaatcccg gctaatcaaa agatgaggcg ctttattata aaaagaaata
     6421 ttaattatgc atgaagtgta atggtactac aaaaagatat ccatgattgc tggtaatcat
     6481 ttcatgagtt aatctacaat atataatgaa aaaattggcg ggaattatag agtatggata
     6541 tcgcggaatt attggcattt tcagttaaaa acaaatcatc agatttgcat atttcagctg
     6601 gcatgcctcc tatgattcgt gttgatggtg atttacgcaa aattaattta cctccattag
     6661 agcataaaga cgtcattaag attatttatg acataatgaa tgacaggcaa agaaaagaat
     6721 atgaagaatt ttttgaaaca gatttttcct ttgaaatagc caatctggca cggttcaggg
     6781 ttaatgcttt caatcaatcg cgcggtgccg ctgctgtttt cagaactatt ccttctgaaa
     6841 ttcttagcat ggaagattta ggattgcccc caatttttaa agaaatggct agtttttcca
     6901 ggggtctggt tctggttact ggcccaactg gatcaggaaa aagtaccacg cttgcagcag
     6961 tcatcgatta tattaattca agtcgttatg agcatatttt gacagttgaa gatcccattg
     7021 agtttgttca tcaaagcaaa aaatgtctgg tcaaccaacg cgaagtacac aaagacacat
     7081 tgagctttaa tgccgctttg agatcagcgt tacgtgaaga tccggatatt atattggtgg
     7141 gtgaattacg cgatttggaa actatacgct tggcgatgac tgcagcagaa accgggcatt
     7201 tggtttttgg aacattgcat accaattctg caacaaaaac aataaacagg ataattgatg
     7261 tatttcccgc tgaagaaaaa tcgatggtac gctccatgct ttctgaatca ttgcaagctg
     7321 tcgttgctca aagtttatta aaaaagaata aaggtggtcg ggttgcggcg cttgaaatta
     7381 tgatgtgtac gggggctatt cgtaatttaa ttcgtgagga taagatagcg caaatgtatt
     7441 cgtcaattca aactggtcaa gccaaaggaa tgcaaacatt ggatcaacat ttgactgaat
     7501 tggttaataa aaatattatt tcgaaacaca ctgctcatga ggctgccctg aacaagtcat
     7561 tattttaaat acacatgact tgtgaaaaag acccaaggtc gagacaaaaa atgtttttaa
     7621 tgaggaagtt tatataaatt aaatgactaa atttaaaaca ttatttaaca aagagattag
     7681 gggcgcaagt ccagatagat ttcaatacgg tgttggtatt tacaggaatt gagtacaggc
     7741 aagttccaga actcctcaaa aaactttgga gatagcaatg ccaataactg caatgagatc
     7801 tcttcagtta gctcaaagca ttcctgcaga gatcttttgc tcaggtttga agtattaatt
     7861 tctatagcgg gcgactgttt atgccgggct attgttctca ggcatttttt tggatttcaa
     7921 tcaattgagg aataccaatt tcagccaatg acaacatgct gttcagttgt tcccggttaa
     7981 aggagttatc ttcagcagtg ccttgaactt caataaaatg tccttgttca ttcataacca
     8041 cattcatatc tgtttcagca agaacatctt ctgcataatc caaatccagc acgggttgac
     8101 ccctgtaaat acctacagat acggcagcta cataattaaa agcaggcatc ttctttattt
     8161 tttcacgttg aaccatccag tgaattgcat ctcgcatagc cacacaactg ccagttatag
     8221 ctgctgttct ggttcctcca tccgcttgaa taacatcaca atcaagagta atagtatttt
     8281 cgcccaaaac ctttaaatcg atacatgctc tcaatgaacg ccctatgaga cgttgaattt
     8341 ccaatgttct gccaccttgc ttacctttac tggcttccct ttcggtacgg ctatgagttg
     8401 cacgtgggag catgccatat tcagctgtta tccacccttg gtttttacct tttaaaaacc
     8461 ggggaactcc ttcgacgatt gatgcgttac aaatcacttt tgtctgacca aattcgacta
     8521 atacagagcc ttcggcataa ttggtaaaat tacgtgttat tgtaacggga cgaagttgat
     8581 catgttcacg attactggga cgcattagag atactcctct gtaaaatgcc caagtataac
     8641 tctttaatac ttgagttgca ccctaaatac atacgctatt tgtacgttcc tctctatttt
     8701 tgctgaaaaa tatttttaat caaaccattc gatttgtttc cattctttac gttagaaaca
     8761 gtttgtttta agtttcaagt ttgatttaag gcctgacttt caggacctga tacagaagtt
     8821 tgttgcaatt aattgatggg caatccctgt gcaattcttt taatttcagg tatattcgcg
     8881 caaggttaaa aagtaggtat tctttatgat tcatagtatg acggcttttt ctcgaataca
     8941 aaagcagttt gatgtaggtg atttttgttg ggaaatcagg tctgttaacc atcgctatct
     9001 cgatgtctct tttcgtttgc cggagtcctt tcgatttctt gaagcagaat taagaacttt
     9061 gcttcgggat aagatacatc ggggtaaact ggagtgccat ctaaagtaca aggatacaag
     9121 ttgtgataat cggtctatgc ttataaatat aggtacgatt aatgcattac ttgatttaag
     9181 cagtaaatta tctgcttctc atcatctggc taatgatatg actgtcagtc aagtgctttc
     9241 atggccaggc gttgtggagg ctaatctgct ggatatggag gaattgtctc aaattgcttt
     9301 ggagttattt cagaaaagta tcgataaatt gtgtgaagtc agagctgggg aaggcaggtc
     9361 attaaaggca tatgttgaag accgattgca ggctttgcgc caagaagtaa tgaaatccaa
     9421 aagcattgtg gtttcaatga gtgccaagac taaagataaa ttacttacgc gtttgcatga
     9481 attgcaaatg gacgttccag aggcgcgtgt agagcaagaa attgccttgc tactagccaa
     9541 acttgatgtg agtgaagagt tggacaggtt agagactcat atagcggaag taagccgcac
     9601 tttgaatgca gaaaaggtga cgggtagaag actggatttt ttaatgcaag aattaaatag
     9661 agaggcgaat accctaagct caaaatcgga ttcagcagag ttaactttat gtgctgttga
     9721 aatgaaagta ttgattgagc agatgcgtga acaaattcag aattttgagt aaatgatatg
     9781 gttagtgata attcaggaaa tttatacatt gttgcagcac cctccggagg agggaaaaca
     9841 agtttggtga aaaaactcat tgaaatggtg ggtgagattg aagtgtcagt ttctcatacg
     9901 accagaccta tgagacctgg agaaaaagaa ggggtggatt attttttcat tgatgagaaa
     9961 caatttattt ctatggtgaa tgagggggcg tttattgagc atgccaaagt atttaatcat
    10021 tggtatggta cctcagttgc tcaaattaac aaacggttac aatttggaat tgacgtcgtt
    10081 cttgatattg attggcaagg agcggagcaa attagacatg cctatccgga tgcagtgagt
    10141 gtatttatca ttcctccttc tttagacgca ttaaaagaac gcttgatgaa caggcgacaa
    10201 gataaagatc atgtgattag tgagagaatg acaaaagcac aggatgaact tggccattat
    10261 cctgaatttg attatctgat tgttaatgat gattttgaaa aggcggcaat ggaattacag
    10321 tcgatagtaa ttgccaatag gcttcgaatt gaaaaacagg taaataaaca agccaaattg
    10381 ctttctttcc tcttgtcatc gcagtaaaat aaaagatttg agttagtatt tgttctaata
    10441 acctagaggt ggattttatg gcacgagtaa cagttgaaga ttgtttagaa catgttaaaa
    10501 accggtttga gctggttatg gttgctacca aacgagcaag gcaaattgca gttcgtggcg
    10561 atcaacccat ggttgaatgg gaaaatgata agcctactgt agtagcactt agggaaattg
    10621 ccgaaggtta tgttacagcg gacattttgg atgaagatta aaatgagtta ttgactttgc
    10681 cttgggaata ttagccattc taaaatatac ctcttggtaa tcaagttatg gtatttaagc
    10741 aaagcaaagg gaacaagggc gaggcataaa accgtatttt gagtaatgtg aggtataaat
    10801 agccatgttg gatactaggg agtactgcgt gagctacttt aaagagctcg atgaagagct
    10861 taaatgctac cttgagcagg cgcaaataga gaaatgttat caagcttatt tggtggctga
    10921 aaaagcacac catggccaaa tgcgtcgttc aggtgagcct tatattacac accctgtagc
    10981 agcagccctc attctggcaa gaatgagact ggactatcaa actatcatgg ctactctgct
    11041 tcatgacgtc gttgaagata cctccataag taaagaagaa ctggttaatc aatttggtga
    11101 agaagtcact gcccttgttg atggcgtcac caaactcacc aaaattaaat ttgaatcaaa
    11161 ggccgaagct caagcggaaa attttcgcaa gatggttttg gctatggtta aggacattcg
    11221 cgttattatc gttaaattgg ctgatcgctt acataatatg cgcactttag gatcaatgcc
    11281 cgcagccaag cgcagacgaa ttgcaattga aacgctcgag atttatgccc ctattgccaa
    11341 tcgtttgggt atgcattcta tttatatcgg ccttgaggat ttagggtttc aagctttata
    11401 tcctatgcgt tacagggcaa ttaaatctgc tgttgaaaaa tctcggggta atcgaagaga
    11461 gttgacacag accatagaga aagatttgca acacgcctta tcgcagttga acattcccta
    11521 tgagcaagta tttggcaggc aaaagcattt atatagtatt tatagaaaaa tgaagcaaaa
    11581 gaaagcatcc tttacagaaa ttacggatgt gtttgcattt cgcatcatta cagaagacat
    11641 tgactcctgt tatagaattt tgggagcttt gcactgtact tataagcctg taccacaacg
    11701 ctttaaagac tatatcggaa ttcccaaagc caatggctat cagtcattgc ataccacttt
    11761 gtttgggcct tttggtgttc ctcttgaggt tcaaatacgc acaagagaga tggataaagt
    11821 agctgataat ggtgtagcag cgcactggat ctataaatct tccggattgg aagtcaatga
    11881 agctcaactt cgtgccagag agtgggttca aagtttgctt gaaatgcaaa ggagcacagg
    11941 cagttctctt gaatttatcg aaaacgttaa aatagattta tttcctgatg aagtatatgt
    12001 ttttactcct aaagggcaca ttatggagtt gccgaaagga gccactcctg tggattttgc
    12061 ttacacggta cactctggag tgggaaatag ttgtgttgca gcgaaagtga acaggcgttt
    12121 ggttccttta agcattcctt tatccaatgg tcaaaccgta gagattatta cagccccggg
    12181 agcacacccc aacccggctt ggctgaattt tgttgtgact ggaaaggcaa gatcaaatat
    12241 tcgtcatttt ctgaaaagcc aacaacacgc tgagtctatt gttttaggca aacgattatt
    12301 ggagcaatct ttggctgaat tatccagtga ttacgccaaa gtgcctccgg aaacattaca
    12361 ggcattgctc agcgatttac actataaaac ggttgatgac ttattgtatg ccataggaat
    12421 aggtaatcag atggcaatgg ttattgccaa gcggttggtg gtttcgcaag acgccaatga
    12481 atcggataag ggcaataaaa aacctttggc tattaaaggc actgaaggga tggttgtgca
    12541 ttttggtgaa tgctgccaac caatacctgg agataatata gttggtaaat ttcaacaagg
    12601 cagaggcatt attgttcatg ccagtgactg cactacacta aaaacaactc gtagtaatcc
    12661 ggaacagttt attgctttgc gttgggatga gcaggttcag ggtgaatatt gggtagacat
    12721 tactgtagat gtagccaacg aaagaggtgt attggctgct ttagcaactg ctatttcaga
    12781 agcagactct aatataggga atattaatgt ggatcccaga gatggtcgtc ataatgcggt
    12841 cactttttcc atcagtgttc gcgacagaac ccatttggct cgagtcatgc gtcgattaag
    12901 ggcaaataaa gtagttatgc ggttatatcg aaaaaaacaa ggggagattt aatgcaacca
    12961 atcaatacaa aattggcgcc aaaagcgata ggcacgtaca gtcaagcgat aaaaagtggt
    13021 gagatcgttt ttctttcagg gcagatccca ttagatcctg aaacaatgca aatctgcagc
    13081 gatgatatta aattacaaat tactcaagtc ctggaaaatt tatcagctgt atgtgaagag
    13141 gctggtggta gtctggccaa tattgtcaaa ttaaacgtct atctcactga tttaagtcat
    13201 tttcccttaa ttaacgaagc gatgagtcga tatttttcag agccttatcc tgcaagagcg
    13261 gcaatcgaag tctccgcatt accaaagggt gccaaggttg aaatggatgg gattctggtt
    13321 ttgtctgaat ccgcataatc atgagtgatg atcaatacgc tcgcacaggg cgtctgatgt
    13381 tcttatttgt ttggattata ttttttatag ggttgttttt attcttttac tattacgata
    13441 agccagaaag taccattttt gtagctagtc gtaccgagta tgtattaagc gctgataatg
    13501 aaggacatta ttggataaaa ggtaagatta atgaatatcc tgtagagttt ttagtggata
    13561 ctggcgctac tttggtagca ataccgcaag gcctggctaa ggatttaaaa attaccgggc
    13621 gatatcctgt taccatagaa accgccaatg gcaaggtaac tggattttta actcgtttgc
    13681 aacatttgtc atttggagag tttcacttac agaatgtcaa agcggtcata atcccgcaaa
    13741 atgatgataa tacggtgtta ttaggaatga atgtcctatc acaatttcat atgattcagc
    13801 agggcaaaca attgatatta aaaagacagt gaactgactg tatgttttca ataaaatgag
    13861 atcaaacaga tttatttaaa tagagagttt tgatgagtat agtttccctt aacggtgcct
    13921 ctttaatctt ggctggcaat tgtattctgg accgtgcaga tttacagatt cagccacagg
    13981 atagaattgc tcttgttgga cgcaatggcg ctggaaaatc aacattgctg aaaatactac
    14041 aaggcgagtt ggtgcttgat ggtggacaaa ttcaacgctc atccggcttg cgtattgctg
    14101 gtttagttca ggaagtccca agtgctgagg gagagtcagt gtaccatttt cttgttaaaa
    14161 gcttaggtga aacaggggaa gtattgtccc agtttcatga gtttacgaaa caaggagata
    14221 tggacaaatt ggccaaatgt cagcagcgaa tggacaactt gaatgcatgg catttattac
    14281 ctgaaattga aacgatggca agccgattgg gaatagatat tcatgagcag atgtctaatc
    14341 tctcaggcgg tatgaaacga cgcgtattat taggtgcggc actgcttgcc aagcctgatt
    14401 tattgttact ggatgaacct accaaccact tggatgtcga agcaattgaa tggctagaga
    14461 attatttaaa atccttttct ggtgctgtaa tagtagtaac tcacgacagg gaattcttaa
    14521 gccagatagc aacaagcatc cttgaaatcg atcgtggaaa attgtatcta caccattgta
    14581 attatgaagc ttaccttgac aggcgtgaat cgataaggct tagcgaacaa aaacaaaatg
    14641 atttgtttga caaacggctt gcagaagaag aagcctggat acgtacaggt atcaaggcaa
    14701 gacgcacacg taatgagggc agagtcaggg ccttaaaggc aatgagagag cagtacaaag
    14761 cacgtcgtaa tcaattagga acagtgaaat ccttaaattt ggatgtaagc cgttctggtg
    14821 ctcttgtagt agaagcaaac aaagtgagtt atacaattaa tgacaagccc attataaaag
    14881 atttttcttt attaatgaca agaggagaca agcttgggat tatcggcccc aatggttgtg
    14941 gcaaaaccac tttagttcga ttacttctgg gagaaattaa gcctgatgct ggaactataa
    15001 aattagggac agggcttcag gtagcctatt ttgatcagtt acgccgacat ttgcttgaag
    15061 atcaaacagt catgtttaat gtgggggaag gggctgatta tgtaacaatt aatggtaagc
    15121 aaaaacatgt tgccagttat ttgaaagagt ttttattttc ctctgatcga tttaatcagc
    15181 cagtatcttc cttgtctgga ggggaaagaa acagattatt actggcaaaa ctttttgcca
    15241 aaccggttaa tttactcgta atggatgaac caactaatga tttggatata gaaactctgg
    15301 aacttcttga agctgtatta gctgattatc ctggtacttt aatactaatc agtcatgata
    15361 gagcgtttat taatcaagta gtaaccagtg tgttggttta tgaaggaaat ggtaagttta
    15421 atgaatttgt tggtggttat gacgattata aaaaacatca attaacacga aatgagcagc
    15481 aaacgaaatc tccagtttca aaacggagca gcccagagaa agccaaaaat ttatctttta
    15541 atgaacaacg tgagttatcg aagttgccgc aacagattga agccgtagag aaaaaaattg
    15601 aagcactgca ttcgcaaatg gcctcacctg aattttatca gcaagatgcc aagcttattt
    15661 cagaggtaac tcagctgtta gccaaggaag aggcattgtt aaatcaatat tttgctcgat
    15721 gggaagagct ggaagagaaa aaataaaaaa gtatttggtt aattgataag ttaaagtgaa
    15781 aaacaataaa aagatatctt taaataaaat taaaaatagg atttaaaatg cttttaacct
    15841 tggctttggt tattttattt gcaacaatta tggttttctt ctctcaagaa ttcattagaa
    15901 cctttaaaaa aattttggca atcagagggg ctaagttact cattccctta ggcatcgctt
    15961 cctggctaat ttataatttt gattatttat ttatctgggt aatttattat attcgagaag
    16021 tattgcaagc tgtgttagct tttttgacgc ggattatgcc ttttaagcca tattccacat
    16081 cgatagcact tattatacta ctcactactg tttcagtggg acctgtatta ttactggacc
    16141 taatctaccg caaacgaact tacaagggtt atgcttatcc ctatttaaca agcacactga
    16201 ttttaatttt ctgtacgctg atcttgctcg tagtctctta aacagataaa aaaaacaaat
    16261 gatgttaatt ttctaataaa atgaataaat tcctgataat tgattttaag actaaagttc
    16321 ggtgtataat tgcaccaatt tgtttttagg ttgttctatg aataagcaag atttttattt
    16381 tgatttgcct tccgaattaa tagcccaata tcctctggcg aatagaagtg attcacggct
    16441 tttaatttat aatcgacaga cagaagaata tggccattat caattccggg aaattgcaga
    16501 tttcttacag ccaggggact tattggtaat gaatgacagc aaagtgatac cagcacgctt
    16561 atacggccac aaagccactg gcggtaaggt tgaactgtta gtagagagga taactggcga
    16621 ttttactttc ctggcccata tcaaagcgag caaatcatta aaatcaaacg atctcattta
    16681 tcttgatgct ggtaagcggc ttgaagtatt acaaaggcag gatgatttat ttctttgtaa
    16741 ggcgtgcgaa aatattttag atcttttaaa tgatcttggg catattcctt taccacctta
    16801 tatcgccaga gaagatgaat cactggataa ggagagatat caaaccgtct atgccaagtg
    16861 cgcggggtct gttgctgcgc ctacagcagg attgcatttt gatgatgctg ttttatccag
    16921 tattagagcg cgaggagtta atattgctta tgtcactctc catgtagggg caggaacatt
    16981 caggccagtt cgctgtgaac gcattcagga tcataaaatg catagtgagt ggtttacggt
    17041 tagtcctgat ctgtgcactg cagtgaaggc tgccaaatct atgggaaata gagtaattgc
    17101 tgttgggact actgcattgc gcagccttga aagcgctgct atgggaggag agctaattcc
    17161 atgtagtcgt gataccgata ttttcattta tcctggctac cagtttaaag tttgtgatgg
    17221 attaataact aattttcatt tgcctgaatc aactctggtg atgttggtgt cggcttttat
    17281 tgggcaccag gagtgtatgg ctctttatca agaagcaatc gataaaaggt atcgtttttt
    17341 tagttatgga gatgccagtt tattgttata aagtgctctg gaatataata attttggcta
    17401 cagttagagg gtagtggatg ttgagtacaa atcaaaattt tgttcctgtt ttaaatactg
    17461 aagcaggact atgtcttact gcggccaatt ggcaagaaat taagattact attgcatctt
    17521 gttatctgga tttattgtta ttaaagccag gatattcatt attgaaaaat attactgatt
    17581 tcaccaaata tctagggtgg tcaggtcatc tcatcctcaa tgcaagccgc cttgtatccg
    17641 ataaaaacgg gatggtgata ttgatttcac cttatgacgg aagtcgaatc aaattaacta
    17701 actcagagtt agtgcatttg attttgcata ttaagcctgt cgcagtgctt ttacctgaaa
    17761 cgattatgaa tggtttttcc gggctatggg agcaatggga tgatactata ttaccttttt
    17821 tgtcagcgaa gcaacttgaa accttgcagg tgcctggaaa acatggtgtg tatttcaatt
    17881 tcagtgaagc aaaatataat gatgatttct tgagtcaatt gcaaaaatgg tctgaatttc
    17941 ctctttatgt ctctggtcct atcggagctg atttaatcga ggatttaaac aggaagaaat
    18001 cgattttaat cgaatcggat gagcctgcaa aaaatgctat gcggggcatt gtatacggcc
    18061 gcgaagggaa tgttgattta acggatgaaa gccaggcttt caattttcaa ctgattgatg
    18121 agaattgctc atgtcctact tgttcagcac agttgacaag agcttatctg catcatttgt
    18181 tagctaatac cccattgcta tgccagagat tcttgattca acataatgcg tattacgttc
    18241 aaggtaatta actattcatt taccttcgag taaattcgct atatgatgtc acgctggtaa
    18301 tccatacaag agttcttaga actatctttt gaaattggtt tatcgaccat cttcgaaaga
    18361 aaaccaggaa attaataccc gatttgagga gattttatga gtttttttat tagtgatgca
    18421 ttagctgcag caggaaatgc gccagctgct caaactgatg gaactttttc actgattatg
    18481 atcgttgcga tttttgtctt gttttatttt atgataataa ggccgcaaag caaaagagcc
    18541 aaagagcata gagaattgat aaatcgctta aaaaaggggg atgaaatagt aacatccgga
    18601 gggattttgg caaaagttgt gagcctggat gatcaataca tcaaagtaag cccagcagaa
    18661 ggtatagaaa ttaatttgca aaaaggcgca gttactgcag tattaccaaa aggcacaatc
    18721 aaatcacttt aagttaggca tagggaatca gaaatgcaaa ataaatatcc tctatggaaa
    18781 aatctaatgc tgatagtgat tgcagtcatt ggatttgttt acgctatacc gaatttgtat
    18841 acggaaaatc ccgttgttca aatttctgcg ggtacagatg aagatacaga gacaataaaa
    18901 aatcaggtag agtccatatt aaaaaatgcc aatatggatt ataaatctct ggttgtggag
    18961 agggatgggg tagaggtagt attttcttct actgattctc aattattagc tcgtgatgtt
    19021 atcaagaata gcctgggatc tgattacaca gtggctttga atttagcgcc ttccacacca
    19081 gcttggcttg aagcaattca tgctgatcct atgaaacaag gattggactt aagaggcggt
    19141 gttcattttc ttcttgaagt ggatgtcgag agtgttataa gtcggcgtta tgaaggaata
    19201 atgaaaaata ttggccaaga attacgtgaa gcaggtattc gttattcagg catacgttat
    19261 ttatcagata aagggattga attgcgtttc agagattctg actcaatgga aaatgcttta
    19321 gttgagttaa gacaaaaaat atctgatgtg gtttttgtta aaactaaaac acaaaattca
    19381 attttaggcg ccatttctcc agcagaatta aattccataa gacaaaatac tattgagcag
    19441 acaatgagta tcttgagaaa tcgtgtcaac gagctcggag ttggtgaagc tgtcgtacaa
    19501 caacaagggg cgactcgagt cgccgttgat ttgccaggca ttcaagacgc ggccagagca
    19561 aaacaaatac ttggtggtac tgctactttg gaatttcatt tggttgatca ggaaaatgac
    19621 cctttcattg caaagcaaac tggcgtagtt cctgtcaatg ataagctgta tatgatggat
    19681 ggtcatccta tcttattaaa gagacaggtt gttttaagtg gtgactctat tacgtcagca
    19741 gtgtccagtt ttgatcaaca aacggcttct ccatctgttc aaattcagtt gggtggtggg
    19801 ggcgagagct tgtttactaa agttacgcgt gaaaatatcg gtaagcgcat ggcgatcgtt
    19861 tttgtggaaa ccaaaacgac tacacaaaca attaatggcg aggaaaaacg agtaacaaag
    19921 aaagaagagc gagttattag tgcgccagtg attcaaaatg ctttaggtag caatttccag
    19981 attaccggac tgaccgatag taaagaagca agtaatctgg ctttattatt aagagctggc
    20041 gctttacccg ctgcaatcta tcctgttgaa gagcgtaccg ttggcccaac tcttggaaag
    20101 gaaaatattc gccgaggact tatttccctg gaagttggta tgggtttaat tttggtacta
    20161 atgctcgtgt attatcattt ttttggttta attgctgata ttgcattgat gctgaattta
    20221 gtttttcttt gcgcattgtt atccataatt gatgcgactc tgactttacc gggaattgcg
    20281 gggattgttt tgaccgtggg catggctgtt gatgccaatg tcctgattta tgagcggatt
    20341 agagaggagt tgcgtaatgg attgtctcct caagctgcta ttcatgcagg atatgagcga
    20401 gcattttcaa ctatattgga tgccaacgtg actactttaa ttgtagctat cattctattc
    20461 gcggtgggca caggaccggt gcgcgggttt gcggttgtcc tttctctagg tttgttaact
    20521 tctatgttaa ctggtattac ttacactagg gctattgtga attggtatta tggtgggcgt
    20581 aatgtcaaaa aattatctat aggcatataa ggcgatactc agatggaatt ttttaatcca
    20641 aattcaaaaa tagattttat gggcgcgcgc cgttggactg cattgttttc tatattgatt
    20701 tttgtagtgt ctattggcgc attgatgatt aatggtttga aatggggatt agattttact
    20761 ggtggaacgc aaattgaaat cagttactcc aaagcggctg atttaccttt aattagagaa
    20821 aatctgaata aagcgggttt taaagaagct caagtggtta gttatggtac atcaaaagat
    20881 gtacttatca gcattgcacc gagagcggat aaacagcaga gcatgctggt agatcaggtg
    20941 atggaagtac tgcctggagc agtaaaacaa cgagttgatt ttgttggtcc gcaagttgga
    21001 caagaattag caacgaaagg ggctcttgcg attattgtgt ccttgttagc cacgatgatc
    21061 tatatcgcta tgcggtttga atataaactc gctgtaagtt cagcagtggc tttgattcat
    21121 gatccggtat tgattctggg cgtttttgct ttgttcggaa ttgaatttga tctgaaggcc
    21181 cttgctgggt tgttggccgt tattggttat tccttgaatg ataccattgt tgtctttgat
    21241 cgtgttcgag aaaattttgt aaaaattcgc cgaacaagtc caatagatat tatgaatatt
    21301 tcaatcaatc aaactctctc aagaacgatc atgacatctg tgttgacgct gtttgttgtg
    21361 gttgcgcttt ttgtctatgg gggtgaggcg atatatgggt tttcattggc attgattata
    21421 ggaatagtga taggtactta ctcttcaatt tatgttgctg gcgctttagc agtagccatg
    21481 ggtttggata acaaggattt tctacccagt catcgcaggg aggtggatga taggccctga
    21541 ggtcgaatta ttatccgcgt agtatccgct tcctgacagt cgcggctcgg ctttgcccaa
    21601 ttcgacgaaa ttcaaagtca gccataatcg gagccgcgac catcagggag cggataataa
    21661 acaattacaa aattttgtta aaatgtatcc tcttaaaaag agtcaataac ttttaatcaa
    21721 ccagtaactt atctattttt gctgcgcaaa taaaatcatt atgagttaaa ccattaagtg
    21781 catgcgtcat aaagtgaaca cggcaataat tgtagccgac ttctaaatca gggtggtgat
    21841 tttcaatatt tgctatccag gcaatcgcat tgacaaaagc catcgtttca taaaaatttt
    21901 taaatgaaaa agcacgcttg ataattcggt tgtcctctgt tacttcccat tttgtgttta
    21961 attgaggtag taaatttttg atttgctcag agttgagcgc agcgccaatt ccctcgcaag
    22021 attcacaatg cttactactt aaatcactag tcattttgat tccttaattt tatttttaat
    22081 ttaaaaagag ttacaaataa aaatttttca gtgctgttag aaatctggaa ttttgttctt
    22141 tggtcccaat agtaaccctg atgaaattat tcatcttata agcatgcaga ggccttacta
    22201 ttatgccatt atccaataga taattataaa gagccatact atcctcttcg cagtcaaaag
    22261 taaggaaatt acaggaagag ggtaagtatt ttatgtttaa ttcattaaag cccgcctgta
    22321 gctgcaacat cccttcatta ttcattttga ggctagactg gatgaagtca tcgtcatcga
    22381 tggcagcata ggctgctgca agagcaactt gattgactat aaatggcaat tgtactcgtt
    22441 ttaaaatatt aataatggat gggttggcaa tagcataacc taaacgcaaa cctgccatac
    22501 catagatttt tgaaaacgta cgagtaacaa ccaaattagg atgttcttca agccaatcca
    22561 aactattgac agttaattgg ctagcagcaa attcataata ggcttcatct aaaactaaca
    22621 aagtactttt cggaatttgt tccaataaat atttaatttc ttcttgttgg attagcaccc
    22681 cagttggatt atttggatta gctataaaaa taattcctgt ttgttgattg caagcattaa
    22741 cgatatcagt gatattaacc tcccagttgt ggccaatagg cacactattt attggtattt
    22801 gcagggaatt ggcttggatg gcataagtgc taaaagcgta atcatgagta aggatatgtc
    22861 tgtcggtatg aagagcgaaa caatttaata aaatattaaa caggtaatca gacccattgc
    22921 ttagaaacaa ttgctcaggt tttactttta agtaacttgc aagtttggac attaaaggat
    22981 ggttccaggg cgatgggtag gttgctatgt aatgcgatga catagtctga atgacggaaa
    23041 gggctaatgg gctgcatccc aatgggtttt cattactagc cagctttata atgtcagtta
    23101 ttcccttttc ttttgccaat tcttcgatgg atttacctgg tacataagga attaaagaac
    23161 gtattccggc atggggtaat tgttgaaaat caatagacat aactctattc ctagacagaa
    23221 aa
//
LOCUS       DACVWI010000032        22317 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.032, whole genome shotgun sequence.
ACCESSION   DACVWI010000032 DACVWI010000000
VERSION     DACVWI010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 22317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22317
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.032"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(34..492)
                     /locus_tag="JBH85_04715"
     CDS             complement(34..492)
                     /locus_tag="JBH85_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgR family transcriptional regulator"
                     /protein_id="HAU0945498.1"
                     /translation="MTHDAFLDDLILSIVQTESIAEQSDLQNSLKKRGYEIPQATLSR
                     RLKKMKIAKVSGYYKIIDYNQPGLPLVLNVQVSDFGLIILQTHPGNANSLAYYIDRKY
                     VSFSIKDSANSGILGTIAGDDTVLLIIKSKSDQQKVLDILMKEFPYLFAS"
     gene            622..1356
                     /locus_tag="JBH85_04720"
     CDS             622..1356
                     /locus_tag="JBH85_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HAU0945499.1"
                     /translation="MKKICLLLLISSFILISSCNEQKNQNTLRFSTSAEYPPFEYIEN
                     GEIKGFDIDLAKLIAKELGKEAVFDNMQFSTVLPALNSGQDDVAIATITITEERKKNF
                     DFSIPYYFEGMAAVFDISQPVKEISQLTGKKIAVQLGTVMEIWLHQNFPNAEITALDN
                     NNQAIEALIAGHVDVVLMDGAQGGVYSKKYPGLSYSILAKANEGYGLVLKKGSPLRDE
                     INSALENLKAKGEIQKLESIWIKGSI"
     gene            1335..2000
                     /locus_tag="JBH85_04725"
     CDS             1335..2000
                     /locus_tag="JBH85_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HAU0945500.1"
                     /translation="MDKGVNMMEVVQNLFFIGKGIVLTMQLLTGGMLIGVLLGSLLSI
                     CRHQGIACFVINRFISILRGTPLILQLSFIYFAVPVLLGMRPSILVAGIVAFGLNSSA
                     YFAEILRAGIESLPKGQFEAALTLQIPSFYLWKDIILPQVVRNIFPAMINEMIALLKE
                     TALISTIGGMDLMRQAQTLAAQQFTYFMPLCITGFYYYSLVLLLEALGKKIEKRGHYA
                     ASH"
     gene            1984..2652
                     /locus_tag="JBH85_04730"
     CDS             1984..2652
                     /locus_tag="JBH85_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HAU0945501.1"
                     /translation="MLQVINASKKIGNAQVLNEINLSIQANSIVGLVGPSGSGKTTLL
                     RCIQQLESIDSGSIQCEGKSGFMFQDFQLFPHMTVLNNLIYAPSLHDKTADHIANAWA
                     LLAMLGLSDKAHSYPQGLSGGQKQRVALARSLMMKPDLLLCDEPTSGLDMATTNDVIA
                     LLNTVKTLKITMLIASHDLFFLSNIAERLLVVKQGQLIADFKTQEVPDPILYLQQFYQ
                     GEIL"
     gene            2649..3866
                     /locus_tag="JBH85_04735"
     CDS             2649..3866
                     /locus_tag="JBH85_04735"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HAU0945502.1"
                     /translation="MKKVIKKIALAYSGGLDTSIMIPWLKEHYEHAEVIAVICDLGQQ
                     EDLDAIKNKALKSGASKAYVVDVKNEFATQYLWPLVKSGALYEDQYILGTISRPLIAQ
                     KLVEIALTEQVNAVAHGATGKGNDQVRFEYSIKALAPQLEIIAPWRTWDIKSRQEAIV
                     YAKAHGIEVPVTPKAPYSRDHNIWYISHEGGVLEDPSQEMPNDVLLMTAPVSQTPDEE
                     EVVVLDFKKGVPVALNGQELSPVDLLNSLNQKAGQHGIGVADIVENRLVGMKIRGIYE
                     APAAAVLYKAHKLLESLCLTRSTLHLKQSLQQTYANLVYEGRWFSQTKQALDAFIDVT
                     QQHVTGCVKLKLFKGNIIPAGMHSPYSLHHPELATFEEDNVYNQKDAEGFINLFSLSA
                     KIYSQVHQGGNYD"
     gene            3769..5094
                     /gene="argH"
                     /locus_tag="JBH85_04740"
     CDS             3769..5094
                     /gene="argH"
                     /locus_tag="JBH85_04740"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HAU0945503.1"
                     /translation="MYTTKKMRKDSLTSFLYPLKFIARYIRGGIMTNKTWGGRFKKSL
                     DSSVNQFNASLSFDHVLFDQDINGSQVHVKQLAKQKILTEAECQEIYSALEEIRTEIK
                     QGQYSFNERDEEDIHMFIEQLLIQKIGDLGKKLHTGRSRNDQVALDLRLYTRDKGCLI
                     NELLTRLIDCLDDLTSKHQQDLMPGYTHLQQAQPVTLGAYFNAYQCMFSRDKSRLEDW
                     FKRMNYSPLGAGALAGSTLPLDREWVAESLGFAGIIPNTLDAVSDRDFVIELCSVAAM
                     IMMHLSRLCEDLILWSTQEFNFVTLDDAFATGSSLMPNKKNPDVPELIRGKSGRVYGH
                     LMAILTVMKGLPLAYNKDMQEDKEGLFDTINTIIVCLQMITPFLQSLTFNTPLMRTKA
                     QSGYLDATAILESLVMKGMPFRDAHHQVGAWIAEAIEKQCSLNELLKGG"
     gene            5097..6212
                     /gene="argF"
                     /locus_tag="JBH85_04745"
     CDS             5097..6212
                     /gene="argF"
                     /locus_tag="JBH85_04745"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HAU0945504.1"
                     /translation="MSFSTSTNLTPIEMQDDGLEKIQSQNNPCAINEVKTNTFVINLQ
                     QAIFGLETGSEAVDFVSHKDTGFPFPAGEYKPRHFLTGTELAREEIQFILSQARSLKQ
                     NPGLYNQALANKSLVMIFEKPSFRTRLSFALAIQSMGGIVVESIANSRKQETPADMAR
                     VLNGYADFVMVRTHEDSFLQEMAEYSKIPIINGLSALHHPCQILADLLSLEEQFGALK
                     GLTLTYIGDGNNILHSLMLLAPQLGVTVHYCCPKSNQPNEAIVKEAQSKAGKQMIYYF
                     DKPEEAVKQADAVYTDVWTSMGFDNPEAGKIFKGFQVNETLMSHAKPDSVFMHCMPME
                     RGKEVSATLPDSASSIIFTQSENRMHVQKALMLFLDQ"
     gene            complement(6301..7776)
                     /locus_tag="JBH85_04750"
     CDS             complement(6301..7776)
                     /locus_tag="JBH85_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HAU0945505.1"
                     /translation="MNITRLLAFFTSSFFLCPTYASVDSYFSHIKKDSSALYAFFKTM
                     PKGGELHYHLAGGAYPETMLALAANGNYCLDKHTFAVSKDSSHCEGVNVKEVFNNPEL
                     YSNIIKDWSMKDFIPGKESGHDHFFNGFIKYMPIVFDYQPQLLADIVQRAAQQKAQYL
                     EIMTIPDNAQSLTYGDLIKDIPSYDQKRRLLLANKDFQSNIQNTVLESDRILTKASQE
                     LRCNENPASDSCHVKIKFLYYVLREQPVDNVFAQALNAFEAVSKSKGNLIGVNLVQPE
                     DGIISLRDYQKHMSIFEYLHRIYPNVPITLHAGELSPQAVTPENLSHHIRDALLIGHA
                     QRIGHGVDIGYENNAEDTLKYMANHHIPVEINLISNLKILDISGSNHPLNYYLSHNVP
                     VVLSTDDEGVLRTDLTQQYVEAAKEHGLSYQQLKQINRNTLTYSFLPGKSIWANADKA
                     ELVPDCHDLGSKSCQKFIAHNEKAKLQWNLEQQLIAFEKSY"
     gene            7891..9069
                     /locus_tag="JBH85_04755"
     CDS             7891..9069
                     /locus_tag="JBH85_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAU0945506.1"
                     /translation="MYFFIIHCRMFLRFNTWKKKMPYFYTRLAPLFFVFVIALIFINF
                     SYAHEFQTDSKNKHKVDVHIGIYAPFSSHSAFIGRNILAAMEMGSERLQSSDIHYSFY
                     TLDQLPKNKNAGLVLQKFIDTHHINVLVTGGKETGLIAAPIAKKNNLIHFSLTNNTEV
                     ADGRNNFIVWSPAYDQAKVLVNELKRQQVHHLGIITANQPSSTALTHSVIKQLQSDSH
                     IDVAASEYFEPGNKDFSRLTNRIKRKNADMYLVMASPEDIKLIQEQMEADKQHVPITS
                     IVERATPEVVKVFEGQWYVDSHEMQPDFINEFKQNYLNYPVTEAGYAFDLFQLLNKSI
                     VMAIRTQGSPTTSQEVVHQLHDIANGTGVMGTMVLDSKGSLFTKSEVKTVKNGEIHTV
                     "
     gene            complement(9142..10479)
                     /locus_tag="JBH85_04760"
     CDS             complement(9142..10479)
                     /locus_tag="JBH85_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HAU0945507.1"
                     /translation="MVIKKLFSSTLALVYALTLMLPLTAFSAEETNSNYSNTKRIPLE
                     DVQRFSNAIGEIKKYYVKPVDDKELFDNAIRGMLTGLDPHSSYLNEEEFKELQTSTSG
                     EFGGLGIEVTMEEGVVKVITPLVDTPAFKAGIKSGDYIIKLGKESVQGLSLKDAVNLM
                     RGKPGTTIELTILRKGVNKPLTFDLIREVIQIKSVKSKMLSEGYGYIRLTQFQALTGK
                     DMIKAIEQLKQQAGGKLKGLVLDLRNNPGGLLDSAIQVSDAFLGNDKAGKQEMIVYTE
                     GRLPGSKFTALANPGDVLDNAPIVVLINNGSASASEIVAGALKDNKRAIILGTKSFGK
                     GSVQTVLPLDGKTGIKLTTALYYTPSGVSIQAKGIIPDIIVEEVDVPKNAVKKDTLAG
                     FTEADLNGHLINKDNSENTESKNNQIQTGDLIHEDYQLYAALTVLEGMALANR"
     gene            complement(10560..11729)
                     /locus_tag="JBH85_04765"
     CDS             complement(10560..11729)
                     /locus_tag="JBH85_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HAU0945508.1"
                     /translation="MVVSFWKKTMRIPSLSKSLSGASLGLALMVILFFCNGLEAKAAP
                     NSITQAQTKLKQLDAKINKLKQVLANAQDKRTVLNQELGSTEKQIGEGIRKLRIIQAN
                     MSAKEKSIAELQGKINHLNKRLQAQQEMLANHVRARYQMGEYQPLKWLINQDEPFKIN
                     RILTYYQYIIRSRQQLIDEIARTRQNLNDSKTKLGNELAENKQLQFKLSQNQKQLEQN
                     KRYHSTLIQSIDNDIQNNQQSLKDFQKDRDNLSHLMKSLSQQSVIQSGKPFTGMRKKL
                     PLPVQTTHRSLRRMNQGVTFFADEGSIVTAVYPGKVVFSDWLKGYGLLLIIDHGQGFM
                     TLYAHNQSLFKRKGQIVQQNEQIASVGHTGGIKQNGLYFEIRQRGKAVNPLDWLS"
     gene            complement(11689..13233)
                     /locus_tag="JBH85_04770"
     CDS             complement(11689..13233)
                     /locus_tag="JBH85_04770"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HAU0945509.1"
                     /translation="MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI
                     LLKASGLPVGLPDEQMGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVI
                     DQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQS
                     ALDSLKCLNEELAKHPVATINSICGRYYAMDRDKRWERVEPVYNLLTQGKSERQFPDA
                     ETAIHFYYKNKISDEFVPPTLIGKEHSIQDGDAVLFFNFRADRARQLTSTFLDPSFKG
                     FERKTLPKLSYFVSMTQYDKNLLTTTAFPPVPLNNTLGEVLSSHGLSQLRIAETEKYA
                     HVTFFFNGGCESVFTNEERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSQDYHVII
                     CNYANADMVGHTGNFEATVQAIECLDQCMQQVWQALKNNGGKLLITADHGNAEEMFSE
                     ATNQAHTAHTSEPVPFLYVGGGWHFTHSEGSLIDIAPSLLALLGITPPPEMTGRILLE
                     KNHAHP"
     gene            complement(13336..13632)
                     /locus_tag="JBH85_04775"
     CDS             complement(13336..13632)
                     /locus_tag="JBH85_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945510.1"
                     /translation="MSRDTKNLILKAIILFVSLTALVNHAMAMNLLGIGPNPKNLPKD
                     NDVRATFNHCKSCDKSTTPPLIITTPVPIIYYPGCRPIQSCDAYGHCEQKEDCY"
     gene            complement(13709..14980)
                     /locus_tag="JBH85_04780"
     CDS             complement(13709..14980)
                     /locus_tag="JBH85_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HAU0945511.1"
                     /translation="MKKSIHRLVKPRLFAMSISLLAFSSITYGESNGSFALSEHWSMG
                     QQIKLRFDINEVPQSGVVLHLKNGLALTAGDIISLGDLYGIVGKPISHGLTKLEKQTR
                     FKEVFNSFARNAIAVSEVEDLNSVIRAEMREVESGIAKGETAEAIYKRIGNEVGRQIN
                     CITGGGCNSLTWWLNPGRYLKLAMENYDHFTPNNLIAYKSGHHVALQQALKAKRTGKR
                     SDLEVAYAMDAFACHYLSDHFAAGHLRTPREELSAIITPTVLGALLSNYMHNEENKYG
                     IHVTNNLGEQWMVYGDYSYFNPFNQTNQQMLLKALQASADEIFEAYYSGVLPEKNQIE
                     DMIPHITKLNDENNMDIAPMFYWDKENKQLLRRTNLANPYDRHWTNSWWGWSTLLLLK
                     TQYGITSTVQLSLSKYLSQYVPEELQDNPLV"
     gene            15330..16046
                     /gene="uppS"
                     /locus_tag="JBH85_04785"
     CDS             15330..16046
                     /gene="uppS"
                     /locus_tag="JBH85_04785"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HAU0945512.1"
                     /translation="MNHKLPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINC
                     CLEKKISCLSLFAFSSENWSRPVTEVNFLMELFLEALRKEIDDLNQHGIRLKFTGDRE
                     PLSQILQKQMCDAEALTKNNQQLILNVVVNYGGKWDIVTAARKLIRTVLDGKLAYDEI
                     NEAVFAQFLDTNGMPEPDLFIRTSGELRISNFFLWQLAYTELYFTDVHWPDFNEHEFE
                     LALISFAKRARRFGQISQSE"
     gene            16000..16854
                     /locus_tag="JBH85_04790"
     CDS             16000..16854
                     /locus_tag="JBH85_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HAU0945513.1"
                     /translation="MPSGQEGLDKFHNLNKGKTMFMQRLITTLILVPLVLLAIFYAPS
                     WILWGVVLVILLLAGMECFKLIPVDNLTVQACFLIFLLMCFWACGYFYSYWLSVGLLV
                     WLLNGLAILTYPRSQNYWGYPIVVAIASLILLPLFTQSLMQISFLQQGKELLVYLLFL
                     IWASDIGAYLTGKQWGKHKLIPKVSPGKSWEGVTGGVILAMIVATLGYYYFIPYSIYI
                     WFGLALSTVVISIFGDLFISILKRRCQLKDTGNIIPGHGGILDRLDSLIAALPWFYFG
                     LTYIPLGI"
     gene            16812..18239
                     /gene="rseP"
                     /locus_tag="JBH85_04795"
     CDS             16812..18239
                     /gene="rseP"
                     /locus_tag="JBH85_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HAU0945514.1"
                     /translation="MVLLWINLHTTGNLIFWSYQSLDNDMLSTLLYFLLALVLLVTIH
                     EYGHFQVARWCGVKVLRFSFGFGKILARFYDKKGTEYAWSLFPLGGYVKMLDETEGEV
                     SEKEKPFAFNNQSVLVRIAIVVAGPLFNFIFAFVALWLVLVIGMHSLAPMIESVKPNS
                     IAARAGLVPKQEILALNGVKINSWRDFQYEIMPLIGSQETVSLTVKSMINGEESTLYL
                     PLDKWQLDDKKPDPIKSLGIVPFIPTIPPIVGEVVPDSPAEKAGLKIGDEIISVNGQH
                     FNDWLYLVSYVRERPNSQINLDIKRQGKLMDITVHTGSQDNNGKLEGLIGVRSQKVDW
                     PAHWLRLEQQPPISALGTAFKQTVQLTGTTFILMGRLVTGKLGLNSISGPVGIAQGAG
                     DSGRGGLVSYLFFLALVSISLGALNLLPIPMLDGGHLLYYVLEIIRRKPLSDGVKSVG
                     IYFGLLLLVALMFVALSNDISRLTS"
     gene            18362..20722
                     /gene="bamA"
                     /locus_tag="JBH85_04800"
     CDS             18362..20722
                     /gene="bamA"
                     /locus_tag="JBH85_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HAU0945515.1"
                     /translation="MVFNFISARSAGRKIIMKKVSNKLILGVCCSTLLAWSSQSFSSD
                     TFIVKGIRVNGLQRVSTGTVLNYMPVQVGEEISSSSTAQIIRALYETGFFQSVSLERQ
                     GNVLVVNVVERATIGSITVVGNKEIPSDKMKAFLKEMGLVKGRVFQRSSLERLEKELK
                     QAYTARGKYNSRIETKVTPLTENRVAISITVSEGRVSRIKEIKIIGNHDFKANELLPE
                     LTLSTSNLFTYFTKKDQYSKAGMDASLEALRSFYLDRGYLKFNVVSSQVLLSPDKKDV
                     YINIHIEEGPQYHFSGYDVVGKTILPKEKIDSLIQVKKGDIFSRKKVTESISAIGLAL
                     GDVGYGFPAINAEPRIDENNKTVFITFVVQPGRHVYVRRINFHGNTKTGDYVLRNVIR
                     QDEGGLLSLHNIKESERQLRMLGYLKNIDVKTTPVPGTNNQVDLDVNVEEAPSAEASA
                     SMGYGTNGYQFNASVNQRNFMGSGRSMGAAFNASQWGQDYSFNYYNPFYTDTGVGRGG
                     SLYYSRIDPKNLNVSTYSSNRYGGDISYNFPLGEKSSFQLGYGYQDINIKSVGYVLPI
                     INFVALNGNHFQEIRLTSGWSRNSYDQMPYPNQGFNQQAIAMVALPATSQSLSYYKSS
                     YQAHLYYPLTRGWIFSVLGNVGYGNTFDNFGLPFFENYYAGGPVQPGQVRGYDSYSLG
                     PQDNFGNAMGANFLVNGSVGLILPYPLSRDNVRTTIFADAGNVFASGTPPALRGTPAG
                     PMRYSAGVSLEWRSPFGPLSFSLAKALNPQPLDQTQLFQFALSSGF"
     gene            20836..21336
                     /locus_tag="JBH85_04805"
     CDS             20836..21336
                     /locus_tag="JBH85_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HAU0945516.1"
                     /translation="MKRLGAVLVALFLGLFGTTVFADWAKIGVVDLQKIMQTSNQMKE
                     IQQKLEKEFKPRRDKLVAMEASLKSDMEKFKRDSAIMSASQKKELEKKIVASQQQFER
                     DGQQYQQELSTAHNEAMEGLYNKVRTAITKIAKDEKYDIIVQKDAAPFSSESLDVTDK
                     VIKAIN"
     gene            21350..>22317
                     /locus_tag="JBH85_04810"
     CDS             21350..>22317
                     /locus_tag="JBH85_04810"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HAU0945517.1"
                     /translation="MLTIEELAKHLNGVWHGHANHAIFSVSSLARASSKDLVYFDNPL
                     LRPVLNSTRAGAVLLKSEHKDWCPVNCVVVSNPSEAMFKAAKILPQPGVIVSGIHPTA
                     QIHKSAQLGQNVSVGANSMIGEGVQIDDNVTVGPNTTIESSVLIGRGSQLGAGAIIHS
                     GTVLGQSVIIGSGGIVGAAPFNCYKEHGVWQQGPIFGGVVIGQRTQIGANTVIHRGSI
                     GDTYLGEGVCIDSLVLIAHDVYVGNNTAIAGSAAIGALVQIGMDCIIGGASCLAANIR
                     LTNDVVITGMSTVTKSIMRSGIYSSGTTVHDHRKWRRNTARFRHLD"
BASE COUNT         6548 a         3950 c         4669 g         7150 t
ORIGIN      
        1 tttttcataa gccctgtaaa attaaaattg tagctacgaa gcaaataaat atggaaattc
       61 cttcattaaa atatcaagaa ctttttgttg atcagattta cttttaataa tgagcaagac
      121 cgtgtcgtct ccggcaatag ttcctaaaat ccctgaattt gcagagtctt ttatgctgaa
      181 ggaaacgtat ttacggtcta tataataagc aagactgttt gcattaccag gatgagtttg
      241 caggatgatt agcccaaaat cagagacctg gacatttaga accagaggta agccaggctg
      301 attgtaatca atgattttgt aataaccgga tacttttgca attttcattt tttttaagcg
      361 acgagaaagg gttgcttgag gaatctcata ccctcttttt tttaagctgt tctgcaaatc
      421 actttgttcc gcaatacttt cagtttgcac tatcgataaa atcaaatcat ccaaaaaggc
      481 atcatgagtc aattgctttc tccctgttat caattaaatt gaatataaat tactaaaatt
      541 gaaattatat ccattttttc ttgacagtac aaatcctgat cctgtatatt cacaaaacga
      601 ataaatatcg gatacatatt catgaaaaag atttgtcttt tgttattaat cagttctttt
      661 atacttatat ccagttgtaa tgagcaaaaa aatcaaaata cactgcgttt ttccacttca
      721 gcagaatatc caccttttga atatattgaa aatggagaaa taaaaggatt tgatattgat
      781 ttggcaaaat tgattgccaa agagttgggt aaagaagccg tttttgacaa catgcagttt
      841 agtacggttt tgcctgcatt gaattcaggc caggatgacg ttgcgattgc cacaattact
      901 attaccgagg aacgtaagaa aaattttgat ttttccatac cttattattt tgaaggaatg
      961 gctgccgttt ttgatatttc acaaccagtg aaagagatct cgcaattaac aggaaaaaaa
     1021 atagcagtcc agctgggtac tgtcatggaa atttggcttc atcaaaactt tcctaatgct
     1081 gaaattacgg ctttggataa taacaaccaa gcgatagaag ctttaatcgc aggtcatgtt
     1141 gatgtggtcc ttatggatgg ggcacaaggg ggtgtttata gcaagaaata tccagggctg
     1201 tcttattcca tcctggcgaa agcaaatgaa ggttatggat tggtcttaaa aaaaggttct
     1261 cctctaaggg atgaaatcaa ttccgcattg gaaaatctta aagcgaaggg tgaaattcaa
     1321 aaattggaat ccatttggat aaaggggtca atatgatgga ggtggtgcaa aatctgtttt
     1381 tcattggcaa aggaatagtt ctgactatgc aattattaac aggaggtatg ctgattggag
     1441 tattgcttgg atctctcttg tcaatttgca gacatcaagg aatcgcttgc tttgttataa
     1501 accgattcat atccatattg agaggcacac cactcatttt acaattaagt tttatttatt
     1561 tcgcagtgcc tgttttatta ggtatgcgac caagtatttt agtggctgga attgttgctt
     1621 ttggtttgaa tagttcggct tatttcgctg aaattttaag agccggaatt gagagtttac
     1681 ccaaagggca gtttgaagca gcccttactc tgcaaattcc tagcttttac ttatggaaag
     1741 atattatttt acctcaagtg gtaagaaata tttttcccgc aatgatcaat gaaatgatcg
     1801 ccttgttaaa agaaacggcc ttgatttcta ctattggagg catggattta atgcgccagg
     1861 ctcaaacatt ggcagcacaa caatttactt actttatgcc tttatgtatc acgggtttct
     1921 attactacag tttggtctta ctccttgaag cgctaggtaa aaaaatcgaa aaaaggggac
     1981 attatgctgc aagtcattaa cgcatcgaaa aaaatcggca atgcccaagt acttaatgag
     2041 attaatttaa gtattcaagc aaacagtatt gttggtttag taggtccttc tggtagtgga
     2101 aaaacaactt tactgagatg catacaacaa ttggagtcaa tcgattcagg ctctatccag
     2161 tgcgaaggaa aaagcggatt tatgtttcag gattttcaat tatttccgca catgacagta
     2221 ctcaataacc taatttatgc gccaagtctt cacgataaaa ctgctgatca tatagcaaac
     2281 gcgtgggctt tacttgctat gttaggtttg tcagacaaag ctcattctta cccacaagga
     2341 ttgtctggtg gacaaaaaca acgcgtggcc ttggctagaa gcttaatgat gaaaccggat
     2401 ttattgcttt gtgatgaacc gacttctggt cttgatatgg cgaccactaa tgatgtcatt
     2461 gctttgttga atacagtgaa gactctaaaa atcactatgc ttatcgcttc tcatgatttg
     2521 ttttttttat ccaatattgc ggagcgattg ttggttgtaa agcaagggca actaattgct
     2581 gactttaaaa cccaagaggt gcctgatcct attttatatc tacagcagtt ttaccagggg
     2641 gaaatattat gaaaaaggtt attaaaaaaa tcgcattagc ttattcaggt ggcttggata
     2701 cctccatcat gatcccttgg cttaaagagc attatgagca tgctgaagta atcgctgtga
     2761 tttgtgattt agggcaacag gaagatctcg atgccataaa aaataaagcg ctaaaaagcg
     2821 gtgcttccaa agcgtatgta gtcgatgtga agaatgagtt tgccactcaa tatctttggc
     2881 ctttggtaaa atcaggtgct ttatatgaag atcaatacat tctgggcact atttcaaggc
     2941 cactaattgc tcaaaagctt gttgaaattg ctttgacgga gcaagtaaat gccgttgcac
     3001 atggagccac cggtaaaggg aatgatcaag tgcgttttga atattcgatt aaggcacttg
     3061 cacctcagct tgaaattatt gctccctgga gaacttggga tattaaatca agacaggaag
     3121 caattgtgta tgctaaagcg catggcattg aggtaccagt gactcccaaa gcgccttatt
     3181 ctagagatca taacatttgg tatatttctc atgaaggtgg tgtgctcgaa gatccttctc
     3241 aggaaatgcc gaatgacgtg ttattaatga ctgctcctgt atcacagact cctgatgaag
     3301 aggaagtggt tgttcttgat ttcaaaaagg gggttccagt cgccttaaat ggacaagaac
     3361 tttctccagt ggatctctta aattcattaa atcaaaaagc agggcagcat ggtattggag
     3421 tggcggacat tgttgaaaat cgattagttg gaatgaaaat tcgagggatt tatgaagcac
     3481 ctgctgctgc cgtgctttat aaggcacata aactactgga gagtttatgt ctcactcgtt
     3541 ctacgttaca tctgaagcaa tctttacagc aaacttatgc caatttggtt tatgaaggaa
     3601 gatggttttc tcaaaccaaa caggctttgg atgcattcat tgatgtgacg cagcagcatg
     3661 tcacaggctg tgttaagtta aagttattca aaggaaacat tatccctgcc ggtatgcatt
     3721 ctccctatag cttgcatcat cccgaattgg ctacttttga agaggataat gtatacaacc
     3781 aaaaagatgc ggaaggattc attaacctct tttctttatc cgctaaaatt tatagccagg
     3841 tacatcaggg ggggaattat gactaataaa acatggggag ggcgatttaa gaaatctttg
     3901 gatagcagtg tcaaccagtt taatgcgtca ttgtcttttg atcatgtgct ttttgaccag
     3961 gacattaatg gcagtcaggt tcatgtaaaa caattagcta aacagaagat tttaacagaa
     4021 gctgaatgcc aggagattta ttctgctctt gaagaaatca gaacagagat aaaacaaggc
     4081 caatattcat ttaatgaacg tgatgaagaa gacatacata tgtttattga gcaattgctg
     4141 attcaaaaaa taggtgattt gggtaagaaa ttacacaccg gccgtagtcg taatgatcaa
     4201 gtggctttgg atcttcgttt atataccaga gataaaggct gtctgattaa tgaacttttg
     4261 acaaggctta tcgattgtct agatgatcta accagtaaac atcaacagga tttaatgcca
     4321 ggctatactc atttacagca agcccaacct gttacgttag gggcttattt taacgcgtat
     4381 caatgcatgt ttagccgaga caaaagcaga ttagaggatt ggtttaaacg catgaattat
     4441 tctccattgg gcgccggggc actggcagga agtaccttac ctcttgatag agaatgggta
     4501 gctgaatcct tgggatttgc agggatcatt cctaatactc ttgatgcagt cagtgacagg
     4561 gactttgtca ttgaattatg cagtgttgct gcaatgatta tgatgcatct ctccagattg
     4621 tgtgaagatt tgattctatg gtctacccag gagtttaatt ttgttacatt ggatgatgcg
     4681 tttgctacag gctcttcatt gatgcctaac aaaaaaaatc ccgatgttcc tgaattgatt
     4741 cgtggcaaat caggacgagt ttatggtcat ctaatggcca ttttaacggt aatgaagggg
     4801 ttgcccctgg cttataacaa agacatgcag gaggataaag aaggattatt tgatacgatt
     4861 aatacgataa tcgtttgcct gcaaatgata actccttttt tgcaaagtct gacttttaat
     4921 accccgttaa tgagaaccaa agctcaaagt ggttaccttg atgcaactgc cattctggag
     4981 tcattagtga tgaagggtat gccttttcgt gatgcgcacc atcaagttgg ggcatggatt
     5041 gcagaagcga tagaaaaaca atgttcactg aatgaattat taaaaggagg ctaagaatgt
     5101 ctttttccac ctcaaccaat ttgactccta ttgaaatgca agacgatggc cttgaaaaaa
     5161 ttcaatctca gaataaccca tgtgcaatta atgaagtgaa gaccaatact tttgtcatta
     5221 atttacaaca agctattttt ggcctggaga cgggtagtga ggccgttgat tttgtttctc
     5281 ataaagatac aggctttcca tttcctgccg gtgaatacaa accaagacat tttcttactg
     5341 gcacagagtt agcaagggag gaaattcagt ttatcttaag ccaggctcgc tctctaaaac
     5401 aaaacccggg attatataat caggcacttg ccaataaaag tttggtaatg atttttgaaa
     5461 aaccttcctt tagaacccgt ttgagttttg ctttagcgat tcagagtatg ggggggatcg
     5521 ttgttgaaag catcgctaac tcaagaaagc aggagactcc agctgatatg gctagagttt
     5581 taaatggcta tgctgatttt gtaatggtca gaacacatga ggacagtttt ttgcaagaaa
     5641 tggccgaata ttccaaaatc cctattatta atggcctctc cgcattgcat cacccttgtc
     5701 aaattcttgc tgacttgcta agtcttgaag aacagttcgg tgctttgaaa ggattaaccc
     5761 tcacttacat aggggatggc aataatattt tgcatagttt gatgctttta gcaccgcagt
     5821 taggtgtcac tgtgcattat tgttgcccaa aatcaaatca gcctaatgag gctattgtta
     5881 aggaggccca aagcaaggca gggaaacaaa tgatttatta ttttgataaa ccagaggagg
     5941 ccgtgaagca agcggatgcc gtttatactg atgtgtggac aagtatggga tttgataatc
     6001 ctgaagcggg gaagattttt aaagggtttc aggttaatga aacattaatg tcccatgcaa
     6061 aacccgattc agtgtttatg cattgcatgc ctatggaaag gggaaaagag gtttctgcca
     6121 ctttacccga cagcgcgtca tccatcattt ttactcagag tgagaatagg atgcatgtac
     6181 aaaaggcctt gatgttattt ttggatcaat agaaccttgg attatgaggc ccatattagt
     6241 gcataatgaa atgctatttt gcatttctcc taatatggac tcattgtttt gcaaattaat
     6301 ttagtaactc ttctcaaagg caattaattg ttgttccaga ttccattgca attttgcttt
     6361 ttcgttgtgc gcaataaatt tttgacaact tttgctccca aggtcatgac aatcaggaac
     6421 caattcggct ttatccgcat tagcccatat gcttttccca ggtaagaagg aataagttaa
     6481 tgtgtttcta ttaatttgtt ttaattgttg ataactaagg ccatgttctt tagccgcctc
     6541 tacatattgt tgggttaagt ccgttcttag cactccttcg tcatcagtgg ataaaacgac
     6601 aggtacatta tgggaaagat aataattaag aggatgattg gagccagata tatccagaat
     6661 ttttaaatta ctaatcaaat tgatttcaac gggtatgtga tggttagcca tgtattttaa
     6721 ggtatcttct gcattgtttt cataaccgat atccacaccg tggccaattc tttgggcgtg
     6781 cccaatcagc agtgcatcgc gaatatgatg acttagattt tctggtgtta ctgcctgagg
     6841 agataattct ccggcatgta aggtgatcgg aacattcggg tatattcgat gcaggtattc
     6901 aaagatggac atgtgctttt ggtaatcacg caaagaaata attccatctt ccggctgcac
     6961 gaggtttacc ccgattaaat tccccttgga tttcgataca gcctcaaaag cgttcaatgc
     7021 ttgggcaaag acgttatcaa caggctgctc tctgagcaca taatagagga atttaatttt
     7081 tacatggcag gagtcggaag cagggttctc gttgcagcgt aactcttgag atgctttggt
     7141 aagaattcgg tcactttcca aaacggtatt ttgtatgttg ctttgaaaat ctttattcgc
     7201 taataacaag cgtctttttt ggtcatacga tggaatatcc ttgattaaat ccccataagt
     7261 taatgactgg gcattgtctg ggattgtcat aatttccaag tattgtgctt tttgctgtgc
     7321 ggcacgttga acaatatcag caagcaattg cggttgataa tcaaaaacta taggcatgta
     7381 tttgataaat ccattgaaaa aatgatcgtg gccagattct ttacccggta taaaatcttt
     7441 catagaccag tctttaatga tgttggaata gagttcaggg ttgttaaaga cttctttaac
     7501 attaactccc tcacaatgag aagaatcttt actgacggca aaggtgtgtt tatccaggca
     7561 gtagttgcca tttgcggcga gcgccagcat ggtctcagga taggctcctc cagccaaatg
     7621 ataatgtaac tcgccaccct tgggcattgt tttaaaaaag gcataaaggg cactggaatc
     7681 cttttttata tgactaaaat aggaatcaac actggcgtat gttggacaca aaaaaaagga
     7741 actggtaaaa aatgcgagta atctggtaat gttcataatt tcaatgtgat cattaattgg
     7801 tcagatatta tctcataatc ttgcacgatt cccaacagaa tatctgtttt atcatgcaat
     7861 ctcttattat tttttacgaa atgataatga ttgtattttt ttattattca ttgcagaatg
     7921 tttttaaggt ttaacacatg gaagaaaaaa atgccctatt tctatacaag attggcgcct
     7981 ttgttttttg tattcgttat cgcacttatt tttataaatt tttcctatgc ccatgaattt
     8041 caaactgatt caaaaaataa acataaagtg gatgttcaca taggtatcta tgctccgttt
     8101 tccagtcatt cagcttttat tggaagaaat attctggctg caatggaaat gggcagcgaa
     8161 cggttacagt cctccgatat tcattattca ttttatactc tggatcaact tcctaaaaat
     8221 aagaatgctg gtcttgtgct gcaaaaattt attgatactc atcatatcaa tgtgttggtg
     8281 actggaggta aagaaacggg gttaatagca gctcccatag caaagaaaaa caatttgatt
     8341 cattttagtc tgaccaacaa tactgaagtt gcagacggca gaaataattt tatcgtctgg
     8401 agtccagctt atgaccaagc caaggttttg gttaacgaac taaaacgtca gcaggtccat
     8461 cacttgggaa ttattacggc aaatcaaccg tcctcaaccg ctttgacgca tagtgttata
     8521 aaacaattac agtctgattc tcatattgat gtggctgcct ccgagtattt tgaacctgga
     8581 aataaggatt tttcaagatt aactaacaga attaaaagaa aaaatgcaga tatgtatttg
     8641 gtaatggcat cacctgagga tattaaatta atacaagagc aaatggaggc agataaacag
     8701 catgtgccca ttaccagtat agttgagcgc gctactccag aagtggtaaa ggtatttgaa
     8761 ggtcaatggt atgttgattc tcatgagatg cagcctgatt ttattaatga atttaaacaa
     8821 aattatttaa attatcctgt aactgaagca ggttacgcgt ttgatttatt tcagcttttg
     8881 aacaaaagca tagtaatggc gataagaaca caaggttctc ctactacaag ccaggaagtc
     8941 gttcatcaac tccatgacat tgccaatgga acaggcgtaa tgggaaccat ggtattggac
     9001 agtaagggtt ctttatttac caaatctgaa gtgaaaactg tgaaaaatgg cgagattcat
     9061 actgtctagg tagaaaataa aacctgaaat catcagttca ttgtgaatcg atgatttcag
     9121 gcgggagtga ctaattggtc attatctgtt agctaacgcc attccttcca atacggtgag
     9181 tgccgcatat aactgataat cctcgtgtat taaatctccg gtttgaattt ggttgttttt
     9241 ggattcagtg ttttctgaat tgtctttgtt aatcaagtgc ccattaaggt ccgcttcagt
     9301 aaaaccagcg agagtgtctt ttttgactgc atttttagga acgtctactt cttctacaat
     9361 gatgtcagga attattcctt tggcttgaat ggagactcct gatggagtgt aataaagtgc
     9421 tgtggttagt tttattccgg ttttgccatc aagaggtaat acggtttgaa cggatccttt
     9481 tccaaaactc tttgtaccaa ggattatagc tcttttatta tcttttaatg ccccagcgac
     9541 aatttctgaa gcagaggcag aaccattatt aattaagaca acgataggcg cattgtctaa
     9601 cacatcccct ggattggcca gggcggtgaa tttagaacca ggtagtctgc cttccgtata
     9661 gactatcatt tcttgcttac ctgccttgtc attgccaaga aaagcatcgg atacctggat
     9721 agctgaatca agtaaacccc cggggttatt tcttaaatcc aatactaacc ctttcaattt
     9781 cccgcctgct tgttgtttta attgttcgat tgctttaatc atgtcttttc cagttaaagc
     9841 ctgaaattga gtcaatcgaa tgtaaccata accttcgctt agcattttgc tttttacact
     9901 ttttatttga ataacttctc gaattaagtc aaaagttaaa ggtttgttta caccttttct
     9961 caagatagtt aattctatgg tagtacctgg tttgccgcgc attaaattaa cagcgtcttt
    10021 aagagaaaga ccttgaacgg actctttacc cagtttaata atataatcgc cagatttgat
    10081 tcccgcttta aatgctggag tgtctacaag aggagtgatt actttaacaa caccttcttc
    10141 catggtcact tcgataccta aaccaccaaa ttcaccgctg gttgatgttt gcaactcctt
    10201 aaattcctct tcattgagat aactggaatg cggatcaagg ccggttagca tcccgcgaat
    10261 tgcgttatca aataattctt tatcatcaac tggtttgaca tagtatttct ttatttcacc
    10321 gatggcattg gaaaaccgtt gcacatcttc caacggaatt cgttttgtat tagaataatt
    10381 tgaattggtt tcttcagccg aaaacgcggt caaaggcagc atcagagtta gggcataaac
    10441 caatgccaaa gtactggaaa aaagtttctt aataaccata gcgatctcct cagatgcaag
    10501 gccatgaaat tagccacctg cgtatttttt tatgcaattt aaatgccagc ggctaagctt
    10561 taagacaacc agtctaacgg attgaccgct tttcctcttt gtcttatttc aaagtataga
    10621 ccgttttgct taattccacc ggtatggcct acacttgcga tttgctcgtt ttgttggacg
    10681 atttgtcctt tgcgtttgaa gagagattga ttgtgtgcgt ataaagtcat aaacccttgg
    10741 ccatggtcaa taatcagaag caaaccataa ccttttagcc aatcactaaa cacaactttc
    10801 cctgggtaaa cggcagtaac tatggagcct tcatcggcaa aaaatgtcac tccttgattc
    10861 atcctgcgta aagatctatg ggtggtttgg acaggtaacg gcaatttttt gcgcattccc
    10921 gtgaacggtt tgccgctttg aattacactt tgttgagata atgacttcat gagatgagat
    10981 aagttgtctc tatctttttg aaaatctttt aatgattgtt gattattttg aatgtcatta
    11041 tcaatggatt gaatcagtgt gctatggtat cttttatttt gctctagctg tttttgattt
    11101 tgtgacaact taaattgtag ctgcttgttt tctgcaagtt catttccaag cttggtttta
    11161 ctgtcgttaa gattttgtcg ggttcgagca atttcatcaa tcaactgctg acgtgatctt
    11221 attatatact gataataagt taaaattcgg ttgatcttaa aaggctcatc ttggttaatc
    11281 aaccatttca aaggttgata ctcccccatc tgataacgtg ccctgacatg atttgccagc
    11341 atttcctgct gagcttgcaa tcgtttattt aagtgattta ttttaccttg caattcggca
    11401 atactttttt cttttgcgga catatttgct tgtatgattc ttagcttacg tattccttct
    11461 ccaatttgtt tttcagtgct gcccagctct tggtttagca cagtccgttt atcctgtgca
    11521 ttggctaaaa cttgctttag tttgttaatc ttggcatcta actgttttag tttggtttgt
    11581 gcttgagtta tagaatttgg agcagctttt gcctcaaggc cattacaaaa aaatagaatg
    11641 accataagtg ccaaaccaag agaagcaccg gataaagatt tggataggct agggatgcgc
    11701 atggtttttt tccagaagga tacgaccagt catttccgga ggcggggtta tccctagtaa
    11761 tgcaagcaaa gaaggtgcta tatcgattaa acttccttcg gaatgagtga agtgccaccc
    11821 tccacctaca taaagaaaag gaaccggttc actagtatgt gctgtatgag cttgatttgt
    11881 cgcttcgcta aacatttcct cagcatttcc atgatcagca gtgatcaata atttaccccc
    11941 attgttttta agggcttgcc aaacctgctg catgcactga tcaaggcact caatagcttg
    12001 aacagtagct tcaaaatttc ccgtatgtcc caccatatca gcattggcgt aattacaaat
    12061 aatgacatga taatcttggc tattgatggc ggctattaga gttttagtta attcatgcgc
    12121 actcatttct ggttgcagat cataagttgc cacttgggga gagggtacca tgatacgttc
    12181 ttcatttgta aaaacacttt cacatccgcc attaaagaaa aaagtaacgt gagcatattt
    12241 ttcagtttca gcaatgcgta attggctgag accatgagaa gacaagacct cacccagggt
    12301 attatttaaa ggaacaggtg gaaatgctgt cgtggtcaat aaatttttat catattgggt
    12361 catggagaca aaataggaca gctttggcag tgtttttctt tcaaatcctt taaacgaagg
    12421 atcaaggaat gtagaggtta attgccttgc tctgtcagca cgaaaattga aaaacaggac
    12481 agcatcacca tcttgtatag aatgctcttt ccctataaga gtgggtggaa caaactcatc
    12541 agaaatttta tttttgtaat aaaaatgtat tgcagtttct gcatcaggaa attggcgctc
    12601 acttttgcct tgtgttaaca aattataaac aggctctact ctctcccaac gtttgtctct
    12661 atccatcgca taatatcggc cgcaaattga attaatggtt gcaacagggt gtttagccag
    12721 ttcttcattc aggcatttca agctatcaag agcactttgt ggtggggtat ctcggccatc
    12781 aagaaacaaa tgcagatgga cggatctgaa ttttttttga ttacaaaggg caagtaaagc
    12841 aaacaaatgt tgttcgtgac tgtgcactcc gccgggagag agtaacccca tgatgtgaag
    12901 agatttttct gttttcttta attggtcaat tacttcatgg aaaacagcat ttttagcgaa
    12961 ttttccgtta tttatcgcct cattaatgcg agtaaaatct tgctgtatca ctcggcccgc
    13021 gccaatgtgc atatgcccaa cttctgaatt acccatttgc tcatcaggta aaccaacagg
    13081 caagccggag gctttcaaaa gaatatgagg gcaggtttgc caccattcat cccactgagg
    13141 ggtattggct tttgcaatag cattgtatct atcattttcg ttatagcccc agccatcaag
    13201 aatcatgagt accaggggag cattatgcga catgacctaa atcctaaatt gtacaatgaa
    13261 agggctaaaa tgataattat accttcgcgg cagtaagagg tatatagttt cagtaagagt
    13321 tcgctgttat taaatttagt agcaatcttc tttttgttcg cagtgaccat aagcatcgca
    13381 tgactggatc ggtcgacacc cagggtaata aataatgggt acaggagttg taataattaa
    13441 aggaggagta gttgatttat cacaggactt acaatgatta aaagtagctc ttacatcatt
    13501 gtctttgggt agattttttg gatttggtcc tatccctaat agattcatcg ccatggcatg
    13561 gttaacaaga gcagttaagc tgacaaataa aataattgct ttgaggatca ggttcttagt
    13621 atccctactc atgatgtgaa ctccttttta attttatgcc ccgtattata cgataataag
    13681 agtatagttg cttgttatgg ttctgctact ataccaaagg attatcttgc aattcttccg
    13741 gtacatattg agacaaatat ttgcttaaac tcaattgcac agtcgaggtt atgccatatt
    13801 gtgtttttaa caataataaa gtactccagc cccaccaact gtttgtccaa tgcctgtcgt
    13861 aaggatttgc caaattggtt cttcttaaca actgtttgtt ttctttatcc caatagaaca
    13921 taggagcaat atccatgtta ttttcatcat ttaattttgt gatgtgtgga atcatgtcct
    13981 ctatttgatt tttttctggt agaacgcctg agtaataagc ttcaaatatt tcatcagcgg
    14041 aagcttgcaa ggcctttaag agcatctgct ggttggtttg attaaaagga ttaaaataag
    14101 aatagtcacc ataaaccatc cattgttctc ccagattatt cgtcacatga attccatact
    14161 tattttcttc attatgcata taattggata acaacgcacc aaggactgtt ggtgtgataa
    14221 tggctgataa ttcttctcta ggggtgcgca aatggccggc agcgaagtga tctgataaat
    14281 agtggcaggc aaaagcatcc atcgcatagg cgacttccaa atcagagcgt tttcctgttc
    14341 gttttgcttt taatgcttgt tgcagtgcga catggtgccc gcttttataa gctattagat
    14401 tattcggtgt aaagtgatca tagttttcca tggctaattt tagatatctg ccaggattta
    14461 accaccaggt caggctatta caaccacccc cggtgatgca gttgatttga cgacccactt
    14521 cattcccaat tcttttataa atggcttcag cagtttctcc ttttgcaatc cctgattcga
    14581 cttcgcgcat ttctgctcta ataacggaat taagatcttc tacctcacta actgcaatgg
    14641 cattcctggc aaaactgttg aaaacctctt taaaacgagt ttgtttttcc agttttgtta
    14701 agccatggct aattggtttt cctacaattc catacagatc accaagactt atgatatcgc
    14761 cggctgttag tgccaatcca ttttttaaat gtaatacaac acctgattgg ggaacctcat
    14821 ttatgtcaaa tcgtagtttg atttgttgcc ccatggacca atgctcggac aaagcaaaac
    14881 tgccgttcga ttcaccataa gttatagagg aaaaagccaa caagctaatg ctcattgcaa
    14941 ataaccgggg ctttactaat cgatggatag attttttcat tatgtcctca tcaacaggga
    15001 ttgatcattg gttttagtga gaaatagcgt attgtataac gtttgagatg aaatgttgat
    15061 gcattggttc gtcccgagat aatgcatagg tgtgaatgga gtctgtacaa ataaccgtaa
    15121 ccaaaaacga cttagagcgc tataggtcat tggaattatc tcctttctgg atattcataa
    15181 tgaaaagtga caactcgtta cgaagattta ttcaggttta ataatgaggt gtttcataaa
    15241 caaggtcaat tgatttctta agtagtactt aaatttttat ctcaaagagg ttagactatg
    15301 cttcattttt attagtcgga taagttgttt tgaatcataa attacctcaa cacattgccg
    15361 ttgtcatgga tggaaacggg cgttgggctg aaagccgcgg tttgccccgt gtagagggac
    15421 acaaagcggg ccttgactca gttaaaaaga ttatcaattg ttgcttggaa aaaaaaattt
    15481 cctgcttaag cctgtttgca tttagttctg aaaattggtc aagaccagtg acagaagtca
    15541 attttcttat ggagttgttt ttggaggctt tgcgaaaaga gatagacgat ttaaaccagc
    15601 atggaatacg gttaaagttt actggcgata gagaaccttt gtctcaaata ttacaaaagc
    15661 aaatgtgtga tgcggaagct cttaccaaga ataatcaaca attaattctc aatgttgttg
    15721 tgaattatgg tggtaaatgg gatatagtga cggcggctag aaaattaata cgcacggttt
    15781 tggatgggaa gttggcatat gatgaaatca atgaagcagt attcgctcaa tttcttgata
    15841 cgaatggcat gccggaacct gatctgttta ttcgaactag tggtgaatta aggataagta
    15901 atttttttct ttggcagtta gcttatactg agctgtattt tactgatgtt cattggcctg
    15961 attttaatga gcatgagttt gaattggcat tgatttcttt tgccaagcgg gcaagaaggt
    16021 ttggacaaat ttcacaatct gaataaaggt aaaaccatgt ttatgcaacg attgatcacg
    16081 acattaatat tagtgcccct ggttttgcta gctatttttt atgctccttc ctggatttta
    16141 tggggtgttg ttcttgttat actcctgctt gcaggaatgg aatgtttcaa attgattcct
    16201 gtggacaatt taactgtaca ggcttgtttt ttgatatttt tgttgatgtg cttttgggcc
    16261 tgtggctatt tctattccta ttggttgagc gtgggcttat tggtttggtt attaaatggg
    16321 ttagcaattc ttacttatcc gcgctcacaa aattattggg gttatccaat cgttgttgcc
    16381 atagcttctt tgatattact accgttattt actcaaagtc ttatgcaaat ttctttttta
    16441 cagcaaggaa aggaattact tgtctatttg ctttttttaa tttgggcttc tgatattggt
    16501 gcttatctca ctggaaaaca atggggaaaa cataaattaa tccctaaagt tagtccgggt
    16561 aaatcttggg aaggtgttac aggcggagtt attttagcta tgatagtcgc gactttgggc
    16621 tattattatt ttatacctta ctcaatttat atatggtttg gtttagcatt atctactgta
    16681 gttatttcaa tttttggtga tttgttcatc agtatattaa aacggcgttg tcaattaaaa
    16741 gatactggaa atattattcc aggtcatggc ggtatattag atcgattgga tagtctaatt
    16801 gccgcgttac catggtttta ctttggatta acctacatac cactgggaat ttaattttct
    16861 ggtcgtatca atctttggat aacgatatgc tttcaacgtt gctgtacttt ttattagcat
    16921 tggtattgtt agtcaccata catgaatacg gccactttca agtagcgcga tggtgtggtg
    16981 tgaaagtgtt aaggttttca tttggctttg gaaagattct tgcgcgtttt tatgataaga
    17041 aaggaacaga gtatgcctgg tctttgtttc ctttgggtgg ctatgtcaaa atgcttgatg
    17101 aaacagaagg agaagtttct gaaaaagaaa agcctttcgc attcaataat caatctgttc
    17161 ttgtcaggat agctattgta gtagcaggac ctttattcaa ttttattttt gcgtttgtag
    17221 cattgtggtt ggttttggtt atcggtatgc actctttggc tccgatgatt gagtcagtaa
    17281 aaccaaatag tattgctgca cgagctggcc tagtccccaa acaggaaatc cttgctctta
    17341 atggagttaa aattaatagt tggcgagatt ttcaatatga aataatgcct cttatcggct
    17401 cccaggaaac agtgagcttg actgtaaagt caatgataaa tggtgaagaa agcacgttgt
    17461 atttgccttt ggataagtgg cagttggatg ataaaaagcc tgatcctatt aaaagcttgg
    17521 gcatcgttcc ttttataccc actattccac ccatagtcgg tgaagtagtt cccgattctc
    17581 ccgctgaaaa agcaggctta aaaatagggg atgaaattat tagtgtcaat ggtcagcatt
    17641 tcaatgattg gttgtattta gtcagctatg taagggaaag gcccaattct caaatcaatt
    17701 tggatattaa acgccaaggt aaattgatgg atataacggt acacactgga agtcaggata
    17761 ataatggaaa attagagggg ttaataggag ttagatctca gaaagtagat tggcctgctc
    17821 attggctacg gctggaacaa cagccgccaa tttcggcact cggtacggct tttaagcaaa
    17881 cagtacaact cacaggcaca acttttatct taatgggaag attagtgact ggaaaattgg
    17941 gattaaacag tattagcggc cccgtcggta tagcccaggg ggccggcgac tccggccgtg
    18001 gaggattggt atcctatcta ttttttctgg ctttagtaag cattagcctg ggagcgctta
    18061 atttattacc aatccctatg ctggatggcg gtcatctttt gtattatgtc ttggaaatca
    18121 taagaagaaa gccattatcg gacggagtga aatctgtcgg gatctatttt ggattattac
    18181 tattggttgc tttaatgttt gttgctctta gtaatgatat atcaagatta accagttagg
    18241 atttggcgag agtaattcta atttctgtat gattaatgaa tgaaatgatg ttttagcgac
    18301 aaagaaactt gacagtagtt tctagttcct ataaaagggt ttcaattttt tgtacaattg
    18361 aatggttttt aacttcataa gtgcgcgtag tgctggacgt aaaataataa tgaaaaaagt
    18421 cagtaataaa ttaatattag gtgtttgttg ttctactctt ttagcttggt catcccaatc
    18481 cttttcttct gataccttta ttgtcaaagg gattagagtt aacggattac aaagggtttc
    18541 gacaggtacg gtattaaact atatgcctgt gcaagtgggt gaggaaatca gttccagctc
    18601 aacagctcaa attatccgcg ctctctatga gacaggattt ttccagtccg tttcgcttga
    18661 acgccaaggg aatgtgttag tggtcaatgt ggtagagcga gcaactattg gctctattac
    18721 cgttgtagga aataaggaaa taccttctga taaaatgaag gcttttctta aagaaatggg
    18781 gctggtcaaa ggcagagtat ttcaaagatc ttccttggag cgtttggaga aggagctgaa
    18841 acaggcctac acagccagag ggaagtataa ttctcgtatt gaaactaaag taactcctct
    18901 tactgaaaat agagtagcca ttagtattac tgtatcagaa ggtcgagttt cacggattaa
    18961 agaaataaaa ataattggta accatgattt taaagcaaat gagttattgc ctgaattgac
    19021 gttaagtaca agcaatctgt ttacttattt tactaaaaaa gatcaatatt ccaaagcagg
    19081 aatggatgct tctttagaag cattacgttc attttattta gataggggat atttgaaatt
    19141 taatgttgtc tcttcgcaag ttttgctatc gcctgataaa aaagacgtct acatcaatat
    19201 tcatatagaa gaaggacctc aatatcattt ctcaggttat gatgtggttg gaaaaacgat
    19261 attacctaaa gaaaaaattg attcactgat ccaggttaag aaaggcgata ttttttctcg
    19321 taagaaggtt actgaatcca tctctgcaat agggttagct ttaggggatg taggatatgg
    19381 ttttcccgcg attaatgctg aacctagaat agatgaaaat aataaaacag tatttattac
    19441 ttttgtagtg cagccgggcc gtcatgttta tgtgagacgt attaattttc atggtaatac
    19501 gaagacagga gattatgttc tgcgtaatgt gattcgtcag gatgaaggtg gtttactgtc
    19561 tttacataac atcaaggaat ctgagcgtca gttacgaatg ctgggctatc taaaaaatat
    19621 tgatgtcaaa acgacgcctg ttccaggaac caataatcag gtcgatttgg atgttaatgt
    19681 ggaagaagct ccttcagcag aagcaagcgc atccatggga tatggtacaa acggttatca
    19741 atttaatgca tccgttaacc aacgcaattt tatgggaagt ggacgttcca tgggggctgc
    19801 tttcaatgca agtcaatggg ggcaagacta ctcttttaac tattataatc cgttctatac
    19861 cgatactggg gtaggccggg gaggaagctt atattattca aggattgatc ctaaaaattt
    19921 aaatgttagt acatacagtt ctaatcgcta tggtggcgac atcagctata acttcccgtt
    19981 aggtgagaaa agcagttttc aattgggata tggttatcaa gatatcaata ttaagtcagt
    20041 aggttacgta ctccccataa tcaactttgt tgctttaaac ggcaatcatt ttcaggaaat
    20101 aaggttgaca tccggttgga gtagaaacag ctatgatcaa atgccttatc ctaaccaggg
    20161 atttaatcaa caagctattg ctatggtcgc gttgccagca acatcgcaat ctctatctta
    20221 ctataagagc tcttatcagg cgcatttata ttatcctcta acccgcggct ggattttttc
    20281 tgtcctgggt aatgtggggt acggaaatac ttttgataat ttcggattac ccttttttga
    20341 aaactactat gcgggtggtc cagttcaacc aggccaggtt cgaggatacg atagttattc
    20401 tttaggcccg caagataatt ttggaaatgc aatgggtgcg aatttccttg tgaatggaag
    20461 tgtaggtctg atactaccat acccattgag tcgagataat gtaagaacga ctatttttgc
    20521 tgatgcgggt aatgtatttg cttccgggac acctcctgct ttacgtggaa ctccggcagg
    20581 tccgatgcgt tattcagctg gtgtgtcatt agaatggcgc tcaccttttg gtccattgtc
    20641 ttttagcttg gctaaggcat tgaatccaca gcctttggat cagactcaac tcttccaatt
    20701 tgctctttcc tcgggttttt agaggtatta tggattagag taagcggatt ttagtatttt
    20761 aaaaactagt gctgtacata tcgcaacctt tttcgaattg tgctagcatt tcaaacttta
    20821 aattaggaga tcattatgaa acgtctgggt gcggtgttag tcgcattatt tttgggtttg
    20881 ttcggcacga ctgtgtttgc tgattgggca aagataggcg tagttgattt acaaaaaatc
    20941 atgcaaacct caaatcaaat gaaggaaatc caacagaagt tggaaaaaga atttaagcct
    21001 cgtcgagaca agcttgtcgc aatggaagca agcttgaaaa gcgacatgga aaaattcaag
    21061 cgtgatagtg ctataatgag cgcgagccaa aagaaagaat tggaaaagaa aattgttgcg
    21121 tcacaacaac agtttgaacg tgatggacaa caatatcagc aagaattgag cacggctcac
    21181 aatgaagcta tggaaggttt gtataataag gttcgtactg ccattaccaa aattgccaag
    21241 gatgagaagt acgatattat tgttcagaaa gatgcagcgc ccttcagcag cgaatctctt
    21301 gatgtaacag ataaagttat taaagcaatt aattaattcg gcggatgcgt tgctaaccat
    21361 agaggaactg gcaaaacatt taaatggcgt ttggcatggt catgccaatc acgccatttt
    21421 tagcgtatcc tcattggctc gtgcttcatc taaggatctt gtgtattttg ataatccttt
    21481 attgcggcct gtcttaaact ctaccagagc gggtgccgtt ttattaaaat ctgagcacaa
    21541 agattggtgt cctgtaaact gtgttgtagt ctccaatccg tcagaagcaa tgtttaaagc
    21601 agcaaaaatc ttgcctcaac ctggtgtcat tgtctctgga attcatccga cagctcaaat
    21661 tcacaaatct gctcaattag gtcaaaacgt atcagttggt gctaacagca tgattggtga
    21721 aggcgtacaa atagatgata acgtaaccgt tggtcctaat acgacaattg aatcttccgt
    21781 actgattggt agaggaagtc agctaggtgc tggagcaata attcattctg gtacagtttt
    21841 aggccaatct gtgattattg gttctggggg tattgttggt gcggccccat ttaattgcta
    21901 caaagaacat ggtgtatggc aacaagggcc aatctttggt ggagttgtaa ttggtcaaag
    21961 aactcaaatc ggtgcaaata cagtaatcca tagaggttcc attggtgata cttatctagg
    22021 cgagggagtt tgtatagaca gtctagtgct catcgcacat gatgtttatg tagggaataa
    22081 tactgctatt gcaggttctg ctgcaattgg tgctctagtg caaataggaa tggattgtat
    22141 tataggtgga gcaagttgcc ttgcagcgaa tattcgtctg accaatgatg tagtgataac
    22201 cgggatgtct actgtgacaa aatccatcat gcgttcggga atttattctt cgggaacgac
    22261 ggttcacgat catcgcaagt ggcgtcgtaa cacggcacgg ttcaggcatt tggatga
//
LOCUS       DACVWI010000033        21720 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.033, whole genome shotgun sequence.
ACCESSION   DACVWI010000033 DACVWI010000000
VERSION     DACVWI010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 21720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21720
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.033"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            149..1018
                     /locus_tag="JBH85_04815"
     CDS             149..1018
                     /locus_tag="JBH85_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945518.1"
                     /translation="MKKFIIALIGLLLSNSYYGIAIAGNSHHHAMKNPSKNSSKSQQS
                     ATMRLSIQRIIEKKDKKLVFLKLSKTTNNNPVTLNDLVEAHTQKIHLLIIDDNLMDYS
                     HVHPVETTTPGVYQFEWQPILKNASYRAWADLLPANTKIQEYIIADFPSPKNIKGLGG
                     HIDHQPLFESTVDGYQFKLSFDKTPLQVGQPAMGKIDIVDAKGNPVHTLEPIMGAYAH
                     IVGFNEDFKTVTHVHPMGKEPQNKAERGGPELQFHIEPNKAGFIKLFTQVQINGKTLF
                     APFGIPVKNTMQY"
     gene            complement(1112..3109)
                     /gene="traD"
                     /locus_tag="JBH85_04820"
     CDS             complement(1112..3109)
                     /gene="traD"
                     /locus_tag="JBH85_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HAU0945519.1"
                     /translation="MSEYPINNLFREPTEAWSAITCLSLALLAYSQPHLFLLTQTMSL
                     YAAITLSIPGVFRAWQAIKVKRYQHRLLAMPTYALSTTEIPLSKNWLFLGKGFRWRPS
                     HTQKLHQIKQVKNEKFMQRSYSYQLARQFCQNHEHTRLAKWLNNRSKLNPFRPDPPVG
                     GSPFLHGVGEEDKPVYIPQDVRVGHTFVVGTTRVGKTRLASILINQDIRNGDAVIVVD
                     PKGDQDLVRDMMAACKVSGRTEDFKIVHLGFPEKSARYNPLKNFDQISEVATRITDAI
                     SAEGEGKQFAAFAWKYVNIVAICLEEMKQPITYQSIAFYISRLDQLLMTYADTILPNH
                     YPKYHQEIEAIIEEHDSKIGKNNKTKSPMERHQAVIQYVKDHINKTIKSNNAEALHDQ
                     ILIDLYDAAIMDKHYYDKITASVGPVLSEINKSNASKILSSKAKAGDIELMDVIKNKK
                     VLYIGLDSLTNPNIAQAVGKAILSDLVSTAGKIYKEPNARYILNLHCDELSEIIQDSF
                     VKILNKAGGAGFQVTAYAQTIQDMEVALGSRAKAEVSEGNFNTLIMLRVKNEETANLL
                     VKVLPQVGVIGHTQVSMVNDTPHGEDGVYFNTTNEDRVQTSSVPMIGVEDIISLPKGQ
                     AFVLVNGGELYKVRVPLPLSHKDKSSDIYSMKLKINQLPEN"
     gene            complement(3106..3435)
                     /locus_tag="JBH85_04825"
     CDS             complement(3106..3435)
                     /locus_tag="JBH85_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945520.1"
                     /translation="MIKHYIRSFILVLIQAILPIIGLLMIAPWIINTNILTRWQHTFA
                     NIQPLFLGLHGLLYLALILLWPKLVTRIQINNQLSSEQLKTALKVRWYLLAIFLFIDA
                     LMIWRML"
     gene            3450..3614
                     /locus_tag="JBH85_04830"
     CDS             3450..3614
                     /locus_tag="JBH85_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945521.1"
                     /translation="MRKVFRLLAVVLDALVGVAEDKPAKRYLTVYEAQEKFDKGLISI
                     REYNESLESK"
     gene            complement(3620..5173)
                     /locus_tag="JBH85_04835"
     CDS             complement(3620..5173)
                     /locus_tag="JBH85_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG"
                     /protein_id="HAU0945522.1"
                     /translation="MIVFNPLSLYTTYLGWQQYEVLFNALWQTGLLYLGFLAIGYRFL
                     KNVLNPAGAFYAVEHALNNFLYELAVTFLICSLFVYPCVPLETKALQFKPLCGLKNPT
                     TAVIGDSGTTYDEAFADLLTNQVKIPIGFAIIQNFMSSFTYSLMKVTGCTDSLQSIQG
                     DLVSTYLPQSVRKQALDFHRQCFIEARTQFNSEKHEASELDPMLKRYGGEDDLNWIGS
                     KILQKMYYSKLHARQPVPGFTFHQAPNRNLEKAANRGDIPPERLPEDGYPSCQQWWNK
                     IKTDLVEVSNQASVFNKHLNYYAMLDRVRQYKMKHPKAWKADISAEDFIAKMLLQESR
                     DMQTSSVQNLMDNNNGKVASAITHSLVNVGQWTKSWTSTPLKREAIMQTLPVMQAFFM
                     FFLIILTPIVLSLSCYSPRALGSLCALFVMAIFLQYLWHLVGFLERSVLDPLGENEAI
                     SAMKNMAVMFYFVAPVLLLRLSSHFGGDAGAGLMDLVSGSERHSDNVSQSGMQVAKTG
                     VKVISGGLR"
     gene            complement(5176..6543)
                     /locus_tag="JBH85_04840"
     CDS             complement(5176..6543)
                     /locus_tag="JBH85_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HAU0945523.1"
                     /translation="MKKSLLLSLLIPSLIQAGSFMPSQSDYYYELGGTSNLFIPPVNK
                     DQTLVIGADIDGRMGFSCSGFNPVVSITNTFQDLKKSALNIPGGVIDNLKGSVAGFPL
                     YKLQQSMPALYNVLQNAASSAQNEFTLKVKDCQEVKQALEQNQSPMEGILSVSDSQGW
                     LDAAKRAKKENVDVTETSKSIAQKRDEYGLPWIGSDKGNAGGKFQRPIKVINDVVIAG
                     YNILLERKPLNSLEKPSTKIPMTLSWPTPTDAANWAVKVLGDIQVSSSENKQNHDAKA
                     GIGLSALLQSCANANTCSQNIAKALWNLVNGTWTLTEENLHKVSASNLLITDEVIITI
                     QHLPREEQMLTVSKLAEEIAVQNMLDKALMMRRILQAGLQVQEVQNLKPAMNMVLFAL
                     KKLDDDIHSLSFENDVRKKMMNETLGTIMDIRHQAQNQNIPGQDHEQPAVKNGAIYVK
                     ENKGA"
     gene            complement(6553..7527)
                     /locus_tag="JBH85_04845"
     CDS             complement(6553..7527)
                     /locus_tag="JBH85_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945524.1"
                     /translation="MTNLSFALESTSPPHPVNTFTIATRVLQKLFQNSHYKVIGSCTW
                     AVGRLPPRLEVTPAVEQFLPDLIITVSNKPEENPWLEARTLYENKAARTLYQQAYKAA
                     TGSELGFGNDSGQTTDLHINDERTRIVDVIGSPAAFYRIPYLSHRPETGFGVPYYLAE
                     ADAVMDRTEAAELLYMGTHPYLLINHDIGTFTQNWGSEIPRLMRVTQPYNYRASVVAA
                     MHAADIVTNKNPLHVTKSTRNSCGRNCVVANAIYDPRNTKVIWQEIYPINRNIHPGDA
                     QDFGTEDDKAGNGNYVFVLWRKYRGCIQHEGKLVNFLTFPKVEQPQKR"
     gene            complement(7520..10285)
                     /locus_tag="JBH85_04850"
     CDS             complement(7520..10285)
                     /locus_tag="JBH85_04850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HAU0945525.1"
                     /translation="MMKRLSNWLLGEMNPQAIKEQTVKKRYANPLPSFADRLAIVDFN
                     EQEQVFLFADGKSLGSGFELGDIQAEAASPEYLQAVFNKIRDTFASVVPLHAVDPWVM
                     QMFVQDEYCLDPVITHIKTQIPQQFRESPLTQDYLERLHDLYNKMTRPEGLFIDPKTG
                     APYRGRRRRIRVLFYRQLHQTTLPREQILLEHQEVISQIETKLRSPGLEIKRLKGQDY
                     YQWWIRWFNPKSADEILEQYPYPNPIPAGFNLAQNVFFAPPESDEQGFIFEGMKQRIL
                     YVDGLKEAPIIGLVSRERQQANPKHRYALLDTLPEGSIYTIQVVFSHDENLDSHLTRL
                     EKGIVGTSLKPQEVKDDIRTARNELSMGNRLFWVNQAIFYQAEDEQQAQIIEKNLHAI
                     FNDAKMPLIHSNYDLHPLNSWLNALPFNFDPYYARKYLCFDRLMYATELAALLPVYGR
                     NQGARHLPCFPFFNRLGEPVFFDLLHHDFVSQNSHCAIFANSGGGKSVLTGWMIQSLL
                     AMKDARVVLFEMGNSFDRILIHAKAHGKKTNQLLLSNKKDEAVPLNPFCEAYKAIPEI
                     TDNLSTEQATLIAQKIMELKSNLQEPANSEDVVCGDGHRSYLAELALALRTMITEANA
                     LEEEQFTLADETLLIEVLSDAILTSFNNEIPQMLTEHIVSAFKRRLDRETVARKKDRI
                     LDMHDRLNSYVINSVKSRFFNVPTEPLGDFDIFHVDISAIKDDTGKLALVMVSLLPRI
                     LAMAEATQNDNRPTFLFIDESHLQFQIPSVVTVCLLIAKVARKLGLWLVAITQNVTDM
                     NSEKATKILSLIETWILLGLDEKEIADVKRFKSLTPQQETLIRDIDSQKGLYAEAVLL
                     GSRYQGLFRVIPPRYLLALLMTEKSEKAQRHLLEKEHDVLEAAEIMAKKLEQPNTATH
                     NRAYFYD"
     gene            complement(10292..10639)
                     /locus_tag="JBH85_04855"
     CDS             complement(10292..10639)
                     /locus_tag="JBH85_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HAU0945526.1"
                     /translation="MVTINKKTLIMLCASLALSACSTARMSQNAIPEQGLTVSQLYQQ
                     SLQQPIQKPVYQQMRLDDSGEEFKQLPNPEVPIHVFAHVAQLGDEQIIKPAYTTRFFL
                     YKQNQYALASELY"
     gene            complement(10596..11855)
                     /locus_tag="JBH85_04860"
     CDS             complement(10596..11855)
                     /locus_tag="JBH85_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945527.1"
                     /translation="MNKNNGIKILAGSVFFAVIMILINSRHSAPVNNNTPNPNNFGEA
                     IASQFNDNIRDVSARLLETEKKLDQMHKENKSLQKQLKQPKQETSFALQDELNALKEK
                     FASLTEHQTQSYPMEGNQAPVSGQIKDLDTLLDKAPKEGKIFPEHDTSTKEEAPTKTP
                     FYTIPAGSDFSKITLLSALIGEVPVEGKLMQPLFPFTAMVSRGDLMTANGMQLPEEIT
                     GMKISGYSIGVGSFLDNISCVRAYVTSALFVFEDGHFVNVGQEQMKSSAELVNNDSIG
                     YLTTQFGNPCIKGQYITNAPRVLTAFMAAGGIQGAGNALSKWQMSYQAEGGSAIATPT
                     GDLAHFAAGGAINEGSQKITDWLEKRIQGSFDMVFVPASIRGHTGFVPNQLSLHFSQT
                     IAIDKEHQGRVLDYGYHQQKNFDNALR"
     gene            complement(11852..12688)
                     /locus_tag="JBH85_04865"
     CDS             complement(11852..12688)
                     /locus_tag="JBH85_04865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945528.1"
                     /translation="MAIPVLKNVYKIYWSTRRNTMKLIKISLFALCFAVMHLSHALQS
                     EHLVWEKVPLTIELPINKERLVQFPQAIKVIDQQLSASLDILKVKGSLYLKAKESFKD
                     SRLIVQLLPEGEVVILNLNANEKAINTTPIEILIDDPKINLNAGASQYEYNAIQLTRF
                     AIQALYSPERVREIPEGIYRSPMQTNKTIPLFYGASIEAHPLASWRGGNLYVTAVDLK
                     NLLNQPVKLQFTKLMGHWQTASFYPKSELPPRNQHESTTVFLISDQPFATALIQHARY
                     SR"
     gene            complement(12615..13271)
                     /locus_tag="JBH85_04870"
     CDS             complement(12615..13271)
                     /locus_tag="JBH85_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2895 family protein"
                     /protein_id="HAU0945529.1"
                     /translation="MFNYWKKIDSLQHHNRLLLAFIGVLSIIILALIINLMTMPKRYE
                     FWLSPNMAANGGLMKASEIPNEYVQGYVTSLMPTLYSWSNKGKEEFNQNIKAFHYYFT
                     SRHEQLLRETLAAYKNAQLFDRTQVASLYRFMEPQDIKKIGPDTWEVKLILRITQRLK
                     DNSAMVIADKVVAYHLRVVKLNLSRLHNPFQLALDGYTRPEERLQDLLVDTEEHHETH
                     "
     gene            complement(13264..13626)
                     /locus_tag="JBH85_04875"
     CDS             complement(13264..13626)
                     /locus_tag="JBH85_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HAU0945530.1"
                     /translation="MSQPSSRHLSHDFPAWKGLSLRELFWIVITTTPATTLFFVLLGA
                     MVEFPLASGCIGFVIGFILSITVWPKGVSRIKAGKPYGYVMKKTIQWMVRLRLKHSPW
                     IHYQGTWQKNKSVGEPHV"
     gene            complement(13637..14002)
                     /locus_tag="JBH85_04880"
     CDS             complement(13637..14002)
                     /locus_tag="JBH85_04880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945531.1"
                     /translation="MKTMLRSICLGVVNILYAPVLLADNWFPKISDADNIGDGSKSMM
                     TVTGNYVKQGLGLLLFITAVVTFIKFITTVQHGIEESKKNEGSMVAFGTFAVMGITYL
                     AISIASGYVGYTMITKFKI"
     gene            complement(13999..14265)
                     /locus_tag="JBH85_04885"
     CDS             complement(13999..14265)
                     /locus_tag="JBH85_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945532.1"
                     /translation="MSKDEIARMFATTFKQASNNISAQVFSGSIRFIAIALVILAVMW
                     SVNHMMDAEEKQQHGYLLRLGSRLIRLVIGLMIFILVLFVKETT"
     gene            complement(14265..14591)
                     /locus_tag="JBH85_04890"
     CDS             complement(14265..14591)
                     /locus_tag="JBH85_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945533.1"
                     /translation="MKRLLCLTLMMISLHSWANNPDLNETLVRIINQINAIMPLLDEA
                     QTQITPNTRIQLQIEGFEDVQGQYHAGLREDLLNIRNGLIDYINQPIIAPRKIKALEM
                     DFVRKP"
     gene            complement(14601..15233)
                     /locus_tag="JBH85_04895"
     CDS             complement(14601..15233)
                     /locus_tag="JBH85_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HAU0945534.1"
                     /translation="MAVKQYSRQMTMQLTLVLFLGWLALIIWAVSQWMLHGYPFAFDK
                     VNVLVNTQREAITPVYQGSLLAALPLDAKPSWTLTIPYLNKLAINEFAADLLEKSQQF
                     FQLVLLSSQCLLIKLIILFAAMPLFALTMVAGLVDGLNQRAIRTACLGRESSYLFHRL
                     NHYLKKGLVILLMLWLALPVSITPAYVFVPISLLMGLMVAMTASRFKKYL"
     gene            complement(15224..15655)
                     /locus_tag="JBH85_04900"
     CDS             complement(15224..15655)
                     /locus_tag="JBH85_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HAU0945535.1"
                     /translation="MIRILLLLLVALNVHSMNVIPLTLSQSDASLRLNLSSPIGVPAK
                     SKATVGKVSRKKLDTNLLNMALFVIGADRESIKWLEQHQEQLKSMQATGFITNVNDFE
                     TIVALQEKFKLPLLPVNVDPLLNYIREQHYPLIIAEGAVWQ"
     gene            complement(15655..16476)
                     /locus_tag="JBH85_04905"
     CDS             complement(15655..16476)
                     /locus_tag="JBH85_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HAU0945536.1"
                     /translation="MLKLSTLAIGLLLGQQAIAGLYIPGIATPPMLSADNALTKAGLA
                     EFHDEVIEDKDFQLNDLQKQEAKAWGLSEAEEKRYLQLIQSRSGIYYKDLRMTPVDIL
                     GLNAKNDAERAHFAELAALQEAQKVAQNIAWNNAFYKAYNQLFKDVPVVGDFDPSPYS
                     PYAHQPIQLKESETLYFFIRADDAVTTIVLQLVDAISRTPNTKLNLLFLDMDNSAIQL
                     WANRHQIPIHLVTSQQITLNPGSQQYEGLKLDKKQTPLLLLAKGKTSQVVDLGRF"
     gene            complement(16469..17053)
                     /locus_tag="JBH85_04910"
     CDS             complement(16469..17053)
                     /locus_tag="JBH85_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945537.1"
                     /translation="MKKYFDAKWLSLLLLNGLLVVFICLKSQPSIENNKFNTLDERLT
                     TIQKQLNQPVEQPDLSPITKNIKQLGAFIQQIQNKDEHQLGEMFTTEQIAIKKQLEGI
                     TDLLRHLDEKKQPVKMLPANQLPFKVLSIDSIQEVSVASVSYHYKTQALEKGDSLAGW
                     TVFEIDFAKQTIEFENADNAHLLVHLSQQEVSHA"
     gene            complement(17050..17463)
                     /locus_tag="JBH85_04915"
     CDS             complement(17050..17463)
                     /locus_tag="JBH85_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945538.1"
                     /translation="MLRKFLLCSFVLCSLNAQAANITQVGRYATLNNQPLAAQINPLK
                     TVQQIHFPASIQTIGEAVNYWLRYSGYHLAPKEKQSESLQQVFQQPLPQVSRNLGPLT
                     ITDGLTVLVGQHLFNLKQDDLLREINFSLIARRAG"
     gene            complement(17456..17683)
                     /locus_tag="JBH85_04920"
     CDS             complement(17456..17683)
                     /locus_tag="JBH85_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator"
                     /protein_id="HAU0945539.1"
                     /translation="MLILIRRMGEAIYIDKGRIKVLLISEKEGLIKLGIDAPKHIDVE
                     RKEVFIQKAMEQHALAQKLRDKSTESGGNHA"
     gene            complement(17677..18036)
                     /locus_tag="JBH85_04925"
     CDS             complement(17677..18036)
                     /locus_tag="JBH85_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945540.1"
                     /translation="MDTLFMRLAAIYGYLWVSTYSNTNFLEISKREWSEGLKEFDNQV
                     LKLALEQIKKKLAVPPCLPIFYEYCTNIQKGIQARQEVLKQKTEPHIPTDPKIVQLHI
                     DQMKDYLFKEAKEKTSC"
     gene            complement(18041..18943)
                     /locus_tag="JBH85_04930"
     CDS             complement(18041..18943)
                     /locus_tag="JBH85_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945541.1"
                     /translation="MGFLFVNTDELSALMGLPYIQQSAYLLGIRPYMDRNTFLVGVKR
                     KISYQQLAEALYVEPHQGFEHSGSPSRPQLRRIIYALERAGLVEIKSIGKQLILKCLL
                     ANSDLSVQNKPDTNPTLQPSTNPNDKNNIKSSSYDKKYQKPNTAQNTKPDTPHNSKDR
                     FIFLQQQFEKFWSLYPLKQDRTKAWREFGYLQPDEQLIEQILTGLQAQINNREEMEFF
                     GEWLPNWKYPATWLSRKCWNDELLTLKTQEEQQNEANQARSRKKSATDILTESCKDAN
                     FDFDFDEPPESGSNVLSFDNSRVR"
     gene            19112..19378
                     /locus_tag="JBH85_04935"
     CDS             19112..19378
                     /locus_tag="JBH85_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0945542.1"
                     /translation="MNMKKIIGSRIAQARRANGLTIKVLADRTGFGAARIGNWEQGTR
                     SPGPEEAKSLSKELQVAASWLLCLTDDPLGERVEKSIIANTKYE"
     gene            complement(19395..>21720)
                     /locus_tag="JBH85_04940"
     CDS             complement(19395..>21720)
                     /locus_tag="JBH85_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945543.1"
                     /translation="QIEGCIRSFLKELGSASSEKNEKIQNKIKRLVLQFTQERMKRIS
                     KPVPQELWTWLSIIETNASRHHNEYDEITKYLSENTDYRRSLQSVAIKSSKPDKLWLI
                     FCLSHTWLWVIEEDIIFHLDNIMGLHTSDNELKWKELVRWIFAYQPFTGAALKHAQDQ
                     AILNINLKKHIHDIELQRANGKKEIEQYEKKQAAHRSRQKKKVIERHQQYHEIRDQLV
                     SGKHINGLNQIAKAYLGWFSDIQGNEPKKRVVELLGIELLPLAINGICSAIEENNIPT
                     VHEIIQLRINQNLISPFEAILLAYCDIILSRNEKLDEIPLNIAHSALAACHWGASFKS
                     NDISSSVQKELEFILFKDSLSKENFIYETIEPYLYSEERYVPGLYRIQTDSLFQDIAG
                     KVALKWLNNYQKLAYDSLKTVLTIAICYSPNDVIKLIREQISKQEFDKCPQRDIWIST
                     CFLLDFESHFEILNQYTSEDKISIWVLSEFIFVDKKISTYWPKMNAQQLYFFILKFGS
                     IWPPVPYPTGSWEGNQHPWDASRLIKGCITELSLITTQEAQDLISDLINKNDLCQYCD
                     ELKHALTENKKHKSESYKKYFSLQDVQNILLSKEPTGHKDLQALLIDQLEILQLRLKG
                     SETSDFKFYWDNENPHKENYCRDLIASALTPHLEKYNARAHVEGARSDDKRCDLLSTY
                     NLLDVPIEIKGQWHTDLWSAAIDQLQNYSTDYHANGFGVYLVLWFGNKTTSKLPKAWK
                     RKRPQSLQEMKNKLNECYKDISDKTKIFVLDLSK"
BASE COUNT         6096 a         4161 c         4568 g         6895 t
ORIGIN      
        1 aactgattta agcaattgaa tgagatgttg tataaactct aaaaaaaaca gtaatcatat
       61 aaagcggtta attgaaacct aggtagttag tgtttatcta cgatataatg atacagaacg
      121 gttgagtgtc cttggagcca aaattattgt gaaaaaattt atcattgccc tcattggttt
      181 gctattaagc aattcgtatt atggaattgc tattgctgga aattcacatc atcatgcgat
      241 gaaaaatccc tcaaaaaatt catcgaagtc acagcaaagt gctaccatgc gattatcaat
      301 tcagaggata attgaaaaaa aggataagaa actagtcttc ctcaagttat ctaaaacaac
      361 aaataataac ccagttaccc taaacgatct tgttgaggca catacacaaa agattcattt
      421 attgattatt gatgacaatc tcatggacta cagccatgtt catccagttg aaacaacgac
      481 acccggtgtt taccaatttg agtggcagcc tatcctcaaa aatgcttctt atcgtgcatg
      541 ggccgatcta ttgcctgcga atacaaaaat tcaggaatat attattgctg attttccatc
      601 tcctaaaaac attaagggat taggaggtca tattgatcac cagcctttat ttgaaagcac
      661 tgttgatggc tatcagttca aattatcttt tgataaaaca ccattacaag tggggcaacc
      721 agccatgggt aaaatagata ttgttgatgc caagggaaac ccagttcata cgttagaacc
      781 aattatgggt gcctatgctc acatcgttgg ttttaatgaa gactttaaaa ccgttaccca
      841 cgttcatcct atggggaaag aaccccaaaa taaggctgaa cgtggaggac ccgaattaca
      901 atttcatatt gagcccaata aagcgggatt tattaaattg ttcacccaag tacaaattaa
      961 tgggaaaaca ctttttgccc cgtttggaat cccagtaaaa aatacaatgc aatattagat
     1021 ccgcaatact ggatacatca cttgaatcac gaatccattc atctcatatt gaacaaataa
     1081 aactggagaa accatccatt ggcatggtgg gttaattttc tggtagttga ttgattttca
     1141 atttcattga atagatatca gatgacttat ctttgtggct taaaggtaaa ggaactctta
     1201 ctttataaag ttctccccca tttactaaaa caaaagcctg cccctttggc aaagaaataa
     1261 tatcctctac tccaatcata ggcacagaag aagtttgtac tctgtcctca ttggttgtat
     1321 taaaataaac cccatcttcc ccatgaggtg tatcattaac catagaaact tgggtatgtc
     1381 caataactcc aacttgaggc agcactttaa ccagtaaatt ggctgtttct tcatttttaa
     1441 cacgcagcat aattagggta ttaaaatttc cctcggatac ttctgcttta gccctggaac
     1501 ccagtgcaac ttccatatct tgaatagttt gagcgtaagc ggtcacttga aaaccagcac
     1561 cgcccgcttt attgagaatc ttcacaaaag aatcctggat aatctctgac agctcatcac
     1621 aatgcagatt caatatatag cgagcattgg gttccttgta aattttacca gctgtagaaa
     1681 ccagatctga caaaatagct ttacccactg cttgggcaat attaggatta gttaaactat
     1741 ctaaaccaat ataaagcact ttcttatttt taatcacatc catcagctca atgtcacctg
     1801 ctttggcctt tgacgataga atttttgaag cattactttt attgatttca gacaatacag
     1861 ggccgacgct ggctgtgatt ttgtcatagt agtgtttatc cataatagct gcatcataaa
     1921 ggtctatcag gatttggtcg tgaagcgctt cggcattgtt gcttttgatg gttttgttga
     1981 tgtggtcttt gacatattga atgactgcct ggtggcgttc cataggggat ttggttttat
     2041 tgtttttacc aatcttgctg tcatgttcct ctataatagc ttcaatctct tgatgatatt
     2101 tgggatagtg attgggtaga atggtgtcgg catatgtcat caatagttga tctaatcgac
     2161 tgatataaaa ggctatggat tggtaggtaa tgggttgttt catttcttca agacaaatgg
     2221 caacgatatt aacatatttc catgcaaagg ctgcaaattg cttcccttca ccttctgcgg
     2281 atattgcatc ggtgattcgt gtagccactt cactgatttg gtcgaaattt ttgagaggat
     2341 tatatcgtgc ggatttctct ggaaagccta agtgaacgat tttgaaatct tctgttctgc
     2401 ctgatacctt acaggcagcc atcatgtctc taaccaagtc ctggtcgcct ttagggtcta
     2461 caacaataac ggcatcaccg tttcggatgt cctggttaat cagaatactg gctaatcgag
     2521 ttttgccgac tctggtagta ccaaccacaa aagtatgacc tacacgtaca tcttgaggaa
     2581 tgtaaactgg tttatcttct tctccaactc cgtgaaggaa aggacttcct ccgacgggag
     2641 gatcgggtct gaatggattt aacttggaac ggttgttaag ccattttgct aatcgagtgt
     2701 gttcatggtt ttggcagaat tgtctggcca gctgatagct atagctcctt tgcatgaact
     2761 tttcattttt gacctgtttg atttgatgca gcttttgggt atggcttggt cgccagcgga
     2821 aacctttacc tagaaatagc cagtttttgg ataaaggaat ttctgtggtg gatagggcat
     2881 aggttggcat ggctaaaagt ctgtgctgat atcgcttaac ctttattgct tgccatgctc
     2941 taaagacacc agggattgat agtgtaatcg ctgcatatag actcattgtt tgcgtaagca
     3001 agaacagatg tggttggcta taagcgagta gagccaaaga caaacaggta atcgctgacc
     3061 aggcttcggt tggttcccga aataggttat taataggata ttcgctcata acattctcca
     3121 aatcatcagt gcatcaataa ataagaaaat agccagtaga taccagcgga ctttgagggc
     3181 tgttttgagt tgttcggatg agagttgatt attaatctgt atgcgtgtga ccagctttgg
     3241 ccataacaaa atcaaagcca gataaagtag tccatgtaag cctagaaaca acggttgtat
     3301 attagcgaat gtatgttgcc aacgagtgag aatatttgta ttgataatcc aaggagcaat
     3361 catcaataaa ccaatgattg gtaaaatggc ttgaatcagt actagaatga atgaacggat
     3421 gtaatgttta atcataggga tagctccaaa tgagaaaggt atttcgcttg ttggcggtag
     3481 ttcttgatgc ccttgttggc gtagccgagg ataaacctgc taaacgctat ttgactgttt
     3541 atgaggctca agaaaaattt gataagggct tgattagtat tcgtgaatac aatgaatccc
     3601 ttgagtctaa ataaggcctt catcgaagac ctcctgatat cactttaacg cctgttttag
     3661 ctacctgcat acctgattga cttacgttat cgctatggcg ttcagaaccg ctgactaaat
     3721 ccataagacc tgcaccagcg tcaccgccaa aatgactaga taatctgagt aacaaaacgg
     3781 gtgctacaaa gtaaaacatt acagccatat tcttcatggc cgaaatagcc tcgttttccc
     3841 ctaatggatc aagcacagag cgttcgagaa atccgaccag atgccagagg tattgaagaa
     3901 agatagccat aacaaacaag gcgcacagac tgcccaacgc tcttggacta tagcaactta
     3961 aggacaatac tattggcgtt aaaatgatta aaaagaacat gaaaaacgct tgcatgacgg
     4021 gcagggtttg catgattgct tctcttttta atggggtgga tgtccaggat tttgtccatt
     4081 gtccgacatt gaccaagcta tgggtaatgg cagatgcgac cttaccatta ttattgtcca
     4141 tgaggttttg cacagaactg gtctgcatgt ctctgctttc ttgcaagagc atttttgcaa
     4201 taaaatcttc tgcgctgatg tctgctttcc aggctttcgg atgtttcatt ttatattggc
     4261 gaaccctatc caacatagcg tagtagttca gatgtttatt gaaaacgctg gcctgattag
     4321 agacttcaac caagtcagtt ttgattttat tccaccattg ctgacagctg ggataaccat
     4381 cttctggcaa tcgttcgggt gggatatcgc cacgattagc tgctttttca agattgcgat
     4441 taggggcttg atgaaaggta aatcctggca ctggttggcg tgcatgaagt ttgctgtaat
     4501 acatcttttg caggatttta gaacctatcc agtttaaatc atcttcaccg ccatagcgtt
     4561 tgagcatagg gtctaattca ctggcttcat gcttttcact attgaattga gttcttgctt
     4621 caataaaaca ttgcctatga aaatccaatg cttgtttgcg aacgctttgg ggtagatagg
     4681 ttgataccaa atcgccttga atagattgca aactatcggt gcaacccgtt accttcataa
     4741 ggctgtaagt gaagctcgac atgaaattct ggataatggc aaagcctata ggaattttga
     4801 cctggttagt cagtagatct gcaaaggctt catcataagt tgtgccgctg tcgccaatga
     4861 ccgcagtcgt tgggttcttt agtccacata ggggtttaaa ttgtaaagct ttggtttcca
     4921 atggtacgca aggatagaca aataaactgc atatcaggaa agtgactgcc aattcataaa
     4981 ggaaattatt taaagcatgt tccacagcat aaaaagcgcc agctggatta agcacatttt
     5041 taagaaagcg atagccaatg gccaaaaacc caagatataa cagccctgtt tgccacaggg
     5101 cgttaaatag aacctcatac tgttgccagc ctagataggt ggtgtagagg gataaagggt
     5161 taaagacgat catgattaag ctcctttatt ttctttgacg tagattgcac cattttttac
     5221 tgctggctgt tcatgatcct ggcctgggat attttggttt tgtgcttggt ggcgaatgtc
     5281 catgatggtt cccaaagtct cattcatcat ttttttgcgg acatcgtttt caaatgacaa
     5341 tgagtgaatg tcatcatcca gttttttcag tgcaaaaagg accatgttca tagcaggttt
     5401 taagttttgt acttcttgta cttgcagtcc tgcttgtaaa atacgacgca tcattaaggc
     5461 tttatccaac atgttttgga cagcaatttc ctcagctaac ttcgagacag tgagcatctg
     5521 ttcttcacga ggtaaatgtt gaattgtgat aatgacttca tcagtaatca gtaaattgga
     5581 ggcgctgact ttatgcagat tttcttcggt cagtgtccat gtaccattga ctaaattcca
     5641 taaggctttg gcaatgttct gactacaggt attagcgttc gcacagcttt gcaataaggc
     5701 tgataagcct atccctgctt tagcatcgtg attttgtttg ttttcactgc tgctgacttg
     5761 aatatcacct agaaccttaa ctgcccaatt ggcagcatca gtaggtgttg gccagcttag
     5821 tgtcataggg attttagtac ttggtttctc caaggaattt aaaggttttc tctccaaaag
     5881 aatgttgtac ccagcaatga ctacatcatt aatcacctta atggggcgtt ggaatttacc
     5941 gccagcattg cctttatcgc tgcctatcca gggtagaccg tattcatctc gtttttgggc
     6001 aatacttttt gacgtttcgg tcacatcgac gttttccttc ttagcccgtt tggcagcatc
     6061 gagccatccc tgactatctg atactgataa gatgccttcc ataggagatt ggttttgttc
     6121 caatgcttgt ttgacttcct gacaatcttt aactttgagg gtaaattcat tttgcgcgct
     6181 agatgcagca ttttgtagaa cattgtataa agcaggcatg gactgttgta gcttataaag
     6241 cggaaatcct gcgacagagc ctttcaaatt atcaattaca ccgccaggga tatttaatgc
     6301 tgatttcttt aaatcctgaa aagtattggt aatggatacc acaggattaa aaccgctaca
     6361 ggaaaagccc atacggccat ctatatctgc accaataacc agtgtttgat ctttattgac
     6421 gggtggaata aataaattag atgttcctcc taattcgtaa tagtaatcag attggctagg
     6481 cataaagctg ccagcttgga tcagagaggg gattagtaaa ctaagtagta gtgatttctt
     6541 catggcatcg tcctatcgtt tttgaggttg ttctactttg ggaaaggtta aaaagttcac
     6601 gagtttgcct tcgtgctgga tacagccgcg gtatttacgc cagaggacaa atacataatt
     6661 accattaccc gctttgtcat cttctgtacc aaagtcctgt gcatcccctg ggtgaatatt
     6721 tcggttaatg gggtagattt cctgccagat gaccttggtg tttctggggt cataaatggc
     6781 attagctact acacagtttc tcccacagga attacgagtt gatttggtga catgtaaggg
     6841 atttttattg gtgacgatat ccgctgcgtg catggccgct acaactgagg ctctatagtt
     6901 atagggctga gtcactcgca ttaatcttgg aatttcagaa ccccaatttt gggtgaatgt
     6961 gccaatgtca tgattaatta ataggtatgg atgagttccc atatacaaca actcagcggc
     7021 ttctgttcta tccatgactg catcagcttc ggcaagataa taaggaacac caaaacctgt
     7081 ttcaggtcta tgtgacaggt aagggatacg atagaaagca gcagggctgc caataacatc
     7141 aacgatacgg gtgcgttcat cattaatatg aagatcggtg gtttggccgc tgtcattgcc
     7201 aaaacctaat tcagaaccag tcgcagcttt ataagcttgt tgatacagtg ttcttgctgc
     7261 tttattttcg taaagcgttc gtgcctcaag ccagggattt tcttctggct tattgctgac
     7321 agtaatgatt agatcaggca agaattgctc aaccgcgggc gtgacttcaa gcctgggcgg
     7381 tagacggcct acagcccagg tacaagaacc aatcacttta taatggctgt tttgaaatag
     7441 cttttgcaag acccgtgtgg ctatggtgaa ggtgttcact gggtgaggag ggctagtgct
     7501 ttctaaagca aaggacaagt tagtcataaa aataagccct attgtgagta gccgtgttag
     7561 gttgttcgag ttttttagcc atgatttcag cagcttcaag gacatcatgt tctttctcca
     7621 ggaggtggcg ttgtgctttt tctgattttt cagtcattaa gagggcaagc aggtagcgag
     7681 gcggaatgac acgaaacaat ccctgataac gtgaccctaa taaaactgct tctgcataca
     7741 agcctttttg cgaatcaata tctctgatta aggtttcctg ctgcggtgtt aatgatttaa
     7801 agcgtttgac atcagcaatt tctttttcat caagtcccaa taaaatccag gtttcaatca
     7861 acgataaaat tttggtggcc ttttctgaat tcatgtccgt gacgttttgg gtaatagcaa
     7921 ctagccaaag accgagcttt cttgctactt tggcaatcag taaacacacg gtcacaacag
     7981 aagggatttg aaattgcaaa tgggactcat caataaagag aaaggttggt ctgttatcgt
     8041 tctgggtggc ttccgccatg gctagtattc ttggtagcaa cgacaccatg accaaggcca
     8101 gtttgccggt atcatcctta atggctgaaa tatcaacatg aaaaatatca aagtcaccta
     8161 aaggctctgt cggcacatta aaaaaacgag atttgacact gttaatcaca taactgttca
     8221 atcgatcgtg catatcaagg atgcggtctt tcttgcgagc aactgtttct ctatccagtc
     8281 gtcgtttaaa agcacttacg atatgctcag tgagcatttg cggtatttca ttgttaaagg
     8341 acgttaaaat tgcatcactt aacacttcga ttaatagagt ttcatcagcc aaagtaaatt
     8401 gttcttcttc caaagcatta gcctcagtaa tcatggtacg taaagctaaa gcaagctcgg
     8461 ccagataaga tcggtgacca tcaccacaga ccacgtcttc tgaattagca ggttcttgaa
     8521 ggttgctctt taattccatg attttttgag caattaaggt agcctgctct gtacttaaat
     8581 tatctgtgat ttcgggaatg gctttatatg cttcacaaaa tggatttaat gggactgctt
     8641 catctttctt attgctcagt aataactggt tggtcttttt accgtgcgct ttggcgtgaa
     8701 tgagtatcct gtcaaaagag tttcccattt caaaaagcac tactcgggca tctttcatgg
     8761 ccaataaaga ttgaatcatc cagcccgtta aaaccgactt gccaccacca gagtttgcga
     8821 aaatagcgca atgagaattt tggctaacaa aatcatgatg cagtaagtca aaaaaaacag
     8881 gttcacccaa acgattgaaa aaagggaaac aaggtaaatg tcgtgcccct tggttgcgtc
     8941 catagaccgg aagcagtgct gccagctcag tggcatacat cagacgatca aaacataaat
     9001 atttacgggc atagtaggga tcaaaattaa agggtagagc attgagccag gaatttagag
     9061 gatggagatc atagttggaa tgaatcaagg gcattttggc atcattgaaa atcgcgtgca
     9121 gatttttttc tatgatttga gcttgttgct catcttcggc ttgatagaaa atggcctgat
     9181 taacccagaa caatcgattg cccatactta actcattacg ggctgtccta atatcatctt
     9241 tgacttcctg aggttttaga ctggttccta cgattccttt ttccaatcgc gttaaatggg
     9301 aatcaagatt ttcatcatga ctaaagacga cttggattgt gtagatgctt ccttctggca
     9361 aggtatctaa aagtgcgtat cgatgtttgg gattggcttg ctgtctttct cgtgagacta
     9421 aaccaatgat aggcgcttct tttaacccat ccacatatag aattctttgt ttcattcctt
     9481 caaagatgaa gccttgttca tcgctttcag gtggagcaaa gaatacattt tgcgctaggt
     9541 taaaacctgc tggtatggga ttcggataag ggtattgttc taatatctcg tcagctgatt
     9601 tgggattaaa ccaacgtatc caccactggt aataatcttg ccctttgagg cgtttaattt
     9661 ccagccctgg tgaacgcagt ttggtttcaa tctgactaat gacttcttga tgttcgagaa
     9721 gaatttgctc tcgaggtaga gtggtttggt gtaattgtct ataaaacaaa actctgattc
     9781 ttcgtcttcg tccacggtag ggcgcgcctg ttttgggatc aataaataag ccttcgggtc
     9841 gggtcatctt attgtagaga tcgtgcaggc gttctaaata atcttgcgtt aatggacttt
     9901 ctctaaattg ttgggggatt tgggttttaa tatgagtgat aacgggatca aggcaatatt
     9961 cgtcttgaac aaacatctgc atgacccaag gatcaacggc atgaagtgga actaccgatg
    10021 caaaggtatc ccgaatttta ttaaatacgg cttgtaaata ttcaggtgaa gcggcttctg
    10081 cttgaatgtc acctaattca aaccccgaac ctaaactttt accatcggca aataaaaaga
    10141 cctgctcttg ttcattaaaa tcaacaatag ccagtctatc ggcaaaagag ggtaaaggat
    10201 tggcgtaacg ctttttaacg gtttgttcct ttatggcttg gggattcatt tccccaagca
    10261 accagttaga taatcgtttc attatgtctc cttaatacag ttctgatgcc aaggcatatt
    10321 ggttttgctt gtaaaggaaa aagcgagtcg tgtaggcagg cttgatgatt tgttcatcac
    10381 ccaattgcgc cacatgcgca aaaacatgga taggcacttc ggggttaggc agttgcttaa
    10441 attcttctcc cgaatcatca agacgcatct gttggtaaac aggcttttgt attggttgtt
    10501 gcaggctctg ctgatacaac tggctgactg ttaagccctg ctcaggaatg gcgttttgcg
    10561 acatcctggc agtggaacaa gcgcttaatg ccagactagc gcaaagcatt atcaaagttt
    10621 ttttgttgat ggtaaccata atctaatacc ctcccttggt gttctttatc aatggctatt
    10681 gtttggctga aatgtaaact gagttgatta gggacaaacc ctgtatggcc gcggatactt
    10741 gcaggaacaa agaccatatc gaagctgccc tggattcttt tctcaagcca gtcagtaatc
    10801 ttttggctgc cttcgttgat tgcgccccca gcagcaaagt gcgctaagtc gcctgtcggt
    10861 gtggcaatgg cagaacctcc ctcggcctga taactcattt gccatttaga tagggcattt
    10921 cctgcacctt gaataccgcc agctgccatg aaggctgtta atactctggg ggcattggtg
    10981 atgtactgtc ctttgataca aggattaccg aattgcgtgg tcaggtaacc aatgctgtcg
    11041 ttattcacca gctctgcgga gcttttcatt tgttcttggc cgacattcac aaaatgtcca
    11101 tcctcaaaga caaatagggc tgaggtgaca taggcgcgaa cacagctgat gttatcgaga
    11161 aaggaaccaa cgccaatcga ataaccgctg attttcatac cagtgatttc ttcgggtagt
    11221 tgcatcccat tggctgtcat taaatcccct cgactgacca ttgctgtgaa gggaaataaa
    11281 ggctgcatga gtttgccctc aacaggaact tcgccgatta aagctgataa gagcgtgatt
    11341 ttgctgaaat cgctgccagc tggaatagta taaaaaggcg ttttagtggg tgcttcttcc
    11401 ttagttgatg tgtcatgttc agggaaaatt ttgccttctt tcggtgcttt atccagcaag
    11461 gtatccagat ctttaatttg accggataca ggcgcttgat tgccttccat ggggtaggat
    11521 tgcgtttgat gttcagtgag tgacgcaaat ttttccttta atgcattcag ttcatcttgc
    11581 agtgcaaaac ttgtttcttg tttgggttgt tttaattgtt tttgcagcga tttattctct
    11641 ttgtgcattt gatctaattt cttttctgtt tctaataatc gtgcggaaac atcacgaata
    11701 ttgtcattga attggcttgc tatagcttcg ccaaaattat taggattggg cgtgttgttg
    11761 ttaaccggtg cgctatgacg gctattaata agaatcataa tgaccgcaaa aaacaccgag
    11821 cctgccagaa ttttaatgcc attgttttta ttcatcggct gtacctcgca tgttggatga
    11881 gtgctgttgc aaaaggttga tcagagatta aaaagacagt agtgctttcg tgttgattgc
    11941 gtggtggcag ttcgcttttt gggtaaaaac tggcggtttg ccaatgcccc atcagcttgg
    12001 tgaattgcag ctttacaggt tgattcagca aattttttaa atcgactgcg gtgacgtaaa
    12061 gattgccgcc acgccatgaa gccagaggat gagcttcaat gcttgcacca taaaacaaag
    12121 ggatggtttt attggtttgc ataggtgagc ggtaaattcc ctctggaatt tctctgaccc
    12181 gttcaggcga atacaaggct tgaatggcaa aacgggttaa ttgaatagcg ttgtattcat
    12241 attgactggc tcctgcatta aggttgattt tgggatcatc tatcagaatc tcaatcggcg
    12301 tggtgttgat tgctttctca ttggcattaa gattaagaat aaccacttcg ccttcaggca
    12361 ataactggac aatcaagcga gaatctttga atgattcttt ggctttaaga tacaagctac
    12421 ctttgacttt cagaatatcg aggctggcac tgagttgttg atcaatcacc ttaatggctt
    12481 ggggaaactg gactaaccgc tctttattga tcggtaattc aattgttaaa ggaacttttt
    12541 cccaaaccag gtgttcactt tgcagggcat ggcttaggtg catcacagca aagcacagag
    12601 cgaataagct aattttaatg agtttcatgg tgttcctccg tgtcgaccag taaatcttgt
    12661 aaacgttctt caggacgggt atagccatcc agagctaatt gaaaagggtt gtgaagacgc
    12721 gacaggttga gcttgaccac acgaagatga taagccacta ctttgtcagc aatgaccatg
    12781 gcagagttgt ctttgagcct ttgcgtaatg cgtagtatca gcttgacttc ccaggtatcg
    12841 ggaccaattt ttttaatgtc ttgcggttcc ataaagcgat agagacttgc tacttgagtg
    12901 cggtcaaaga gttgagcgtt tttataagct gccagggttt cacgaagtaa ctgctcatgc
    12961 cgtgatgtga agtaataatg aaaggcttta atgttttggt tgaattcttc tttgccttta
    13021 ttagaccagc tgtagagtgt cggcattaag gaagtcacat atccttgcac gtattcattc
    13081 ggtatttcgc ttgccttcat taaaccgcca ttagcagcca tattaggact aagccagaat
    13141 tcatagcgtt tgggcatggt catcaggtta ataattaatg ctaagatgat gattgataac
    13201 acaccgataa aagccagtaa taaacgattg tgatgttgta ggctgtcgat ttttttccag
    13261 tagttaaaca tgcggctctc caacagattt attcttttgc caagttccct ggtaatgaat
    13321 ccaaggtgaa tgtttgagcc ttaatcgcac catccactga atcgttttct tcatcacata
    13381 accatagggc ttacctgctt tgatgcggga aactccttta ggccacacag taatagacag
    13441 aatgaatcca atcacaaaac cgatgcagcc agaggccagc ggaaactcaa ccattgctcc
    13501 taagagaacg aagaacaggg tagttgctgg ggttgtggtg ataacaatcc aaaataattc
    13561 acgaagactt aaacctttcc aggctgggaa gtcgtgtgac agatggcgcg aagaaggctg
    13621 actcatattt cacctcctat attttgaact tggtaatcat ggtgtaaccc acataaccag
    13681 aagcaatgct aatggctaaa taggtgatgc ccattacggc aaaagtaccg aaggccacca
    13741 tggatccttc gttcttttta gactcttcaa taccgtgttg taccgtggta atgaatttaa
    13801 taaaggtcac aacagcggta atgaagagca ataaacccag accttgtttg acgtaattcc
    13861 ctgtcacggt catcatgctt ttagagccgt ccccgatgtt gtccgcgtcg gaaattttag
    13921 ggaaccagtt atctgccaat agcacagggg catataagat atttactact ccaaggcaga
    13981 ttgagcgaag cattgttttc atgttgtctc cttaacaaat aaaactaaaa tgaagatcat
    14041 cagaccaatc actaatctga tgagccgaga acccagacgc agtaagtatc catgttgttg
    14101 tttttcctct gcgtccatca tgtggttgac agaccacatc accgctaata tcaccagggc
    14161 tatggcaata aagcggatac tgccggaaaa gacttgtgcc gatatgttat tgcttgcttg
    14221 tttaaaggtg gtagcaaaca ttctggctat ttcgtcttta ctcattaggg tttcctcaca
    14281 aagtccattt ccaaggcctt gatcttgcgt ggtgcaatga ttggttgatt gatgtaatca
    14341 atcaggccat tgcgaatatt cagtaaatct tctcttaaac ctgcatgata ttggccttgg
    14401 acatcttcaa atccttcaat ttgtaattgg atacgggtat tgggggttat ctgtgtttgt
    14461 gcttcatcaa gcaggggcat gatggcgtta atctggttaa tgatgcgcac cagcgtttca
    14521 tttaaatcag ggttattcgc ccagctgtgt aggcttatca tcattaaggt caaacaaagc
    14581 aatcgtttca tggtttctcc ctataaatac tttttaaagc gactggccgt catggccacc
    14641 attaatccca tcaataaact gataggaaca aagacataag caggggtgat gctgacaggc
    14701 agggcaagcc agagcatgag taaaatcaca agtccctttt ttaaatagtg gttaagtctg
    14761 tggaataaat aagaggattc acggcctaag caagcggtgc gtattgctct ttggttaaga
    14821 ccatcaacta gacctgcaac catagtcagg gcaaataaag gcatggcagc gaataaaata
    14881 ataagtttga ttaatagaca ttgactgctt aataaaacca gctggaaaaa ctgttgtgat
    14941 ttttcgagta agtctgctgc aaattcatta atcgctaatt tgtttaaata gggaatagtc
    15001 agcgtccagc taggtttggc atctaagggt agggctgcca atagtgaacc ttgataaaca
    15061 ggggtgatgg cttctcgttg agtatttaca aggacattga ccttatcaaa ggcaaatgga
    15121 tagccatgaa gcatccattg acttacagcc cagataatca acgctaacca acccaagaaa
    15181 agaactaaag tcagctgcat agtcatttgt ctggaatatt gttttactgc catacagccc
    15241 cctcagcaat gattaagggg taatgttgtt cacggatgta attcagcaat ggatcaacat
    15301 tgacgggtaa tagtggcaat ttaaactttt cttgcagagc tacaatggtt tcaaagtcat
    15361 tcacattggt gatgaaccca gtggcttgca tggattttaa ttgctcttga tgttgttcta
    15421 accatttgat ggattctcta tccgcgccta tgacaaatag agccatgttt aacagattgg
    15481 tatccaattt tttgcggctt actttgccaa cagtggcttt gctctttgct ggtacgccaa
    15541 tagggctaga cagattaagt cttaatgacg catcactttg tgacagcgtt aaaggaatca
    15601 cattcatgct atgaacattt aaagcgacca acagcaagag caaaatccta atcattaaaa
    15661 tctccctaaa tcgacgactt gcgaagtttt gccttttgcc agtaagagca agggtgtttg
    15721 tttcttgtcg agttttaagc cctcatactg ttggctacct gggttcaagg tgatttgttg
    15781 actggtcacc aaatggatag ggatttgatg tctgttagcc caaagttgga tagcgctatt
    15841 gtccatatcc agaaagagaa gattgagctt ggtgtttggt gtacggctaa tagcatcgac
    15901 cagttgcagt acaatggtgg ttacagcgtc atcggctctt ataaagaaat agagcgtttc
    15961 actttctttt aattgaatgg gttgatgtgc atagggagag taaggagatg gatcaaaatc
    16021 accgactaca ggcacatctt taaacagttg gttataggct ttgtaaaagg cattattcca
    16081 ggctatgttt tgcgcgacct tttgggcttc ttgaagggca gcaagttcgg cgaaatgagc
    16141 tcgttcagcg tcattcttgg catttagtcc aagaatatca acgggtgtca tacgtaggtc
    16201 tttgtagtaa ataccacttc tgctttgtat taattgcaga tagcgttttt cttctgcctc
    16261 acttaatccc catgctttgg cttcctgttt ttgtaagtcg ttaagttgaa aatctttgtc
    16321 ttcaataact tcatcatgaa attcggccag acctgctttc gtcaacgcat tatcagcact
    16381 gagcataggt ggtgtggcaa tacctgggat atacaaaccg gcaattgcct gttgacccag
    16441 gagtaacccg attgccagtg tggacagctt aagcatggct cacctcttgt tgacttagat
    16501 gaaccagcag atgcgcattg tcagcatttt caaattctat ggtttgcttc gcaaagtcga
    16561 tctcaaagac agtccatcct gccaaggaat cgcctttttc caacgcttgg gttttgtagt
    16621 ggtaggaaac agaggcaaca gaaacttctt ggatactgtc tatgcttaat actttaaacg
    16681 gtagttgatt tgcaggaagc attttgacag gttgcttttt ctcatccaga tggcgtaata
    16741 aatcagtaat gccttcaagc tgtttcttaa ttgcgatttg ttcagttgta aacatttcac
    16801 ctaattggtg ttcatcttta ttttgtattt gttgaatgaa cgctcccaat tgttttatgt
    16861 ttttggtaat aggcgataaa tccggttgtt caacaggttg attgagttgt ttttgtatag
    16921 tggttaatcg ctcatccagc gtattaaatt tattgttctc aatagagggt tggcttttta
    16981 aacaaatgaa tacgaccaac aatccgttta acaaaagaag actaagccat ttggcatcaa
    17041 aatacttttt catcctgctc tccttgctat cagactaaaa ttgatttctc ttaacaggtc
    17101 atcctgcttg agattgaata gatgctgacc gaccaatacc gtcaatccat cggtaatcgt
    17161 taaaggtcct aaatttctac taacctgtgg tagtggttgt tgaaatactt gttgtaggct
    17221 ttcgctttgt ttttcttttg gagcaaggtg ataccctgaa taacgaagcc agtaattcac
    17281 tgcttctcct atagtttgta tggatgcagg aaaatgaatc tgttgaacag ttttcaatgg
    17341 atttatctga gctgccaaag gttgattgtt gagcgtggca tagcgaccga cttgggttat
    17401 attagctgcc tgagcattta ggctacataa aacaaaacta caaagcagaa attttctaag
    17461 catgattgcc tcctgattct gtggatttat cccttaattt ttgagccagg gcatgttgtt
    17521 ccattgcttt ttggataaag acctctttac gttcaacatc aatatgtttg ggagcatcta
    17581 tacctaattt gattagtcct tccttttcag agataagaag tactttgatt ctgcctttat
    17641 caatgtaaat tgcttcgccc atacgacgga ttagaattag catgatgttt tctccttagc
    17701 ttctttgaag aggtagtctt tcatttggtc gatatgaagt tggacgattt tgggatcggt
    17761 agggatatgc ggttcagttt tttgttttaa cacttcttga cgggcttgga tgcctttttg
    17821 gatgttggtg cagtactcat aaaaaatcgg cagacaagga ggaacagcca gctttttctt
    17881 tatttgttct aaagcaagtt tcaacacttg attgtcaaat tctttcaagc cttctgacca
    17941 ttcacgtttt gagatctcga gaaaattagt gttgctgtaa gttgagaccc acagatagcc
    18001 ataaattgct gcaaggcgca taaacagtgt atccattctc ttatcgtact ctggagttgt
    18061 cgaatgagag gacattgctt cctgactctg ggggttcatc aaagtcgaaa tcgaagtttg
    18121 catctttgca ggattcagta aggatatctg ttgctgattt ttttcgagaa cgcgcttgat
    18181 tggcttcatt ttgctgctcc tcttgggttt ttaaggtaag taattcatcg ttccaacatt
    18241 tgcgtgaaag ccaggtggct gggtatttcc agttcggcag ccactcgccg aaaaactcca
    18301 tttcctcacg gttattaatt tgggcttgca agcctgttag tatttgttca atcaactgtt
    18361 catctggttg cagataacca aactcacgcc aggctttagt tcggtcttgt tttaaaggat
    18421 aaagagacca aaatttttca aattgctgct gtaaaaaaat aaaacgatct ttggagttat
    18481 gaggtgtgtc gggttttgtg ttttgcgctg tgttgggttt ttgatatttt ttgtcgtaac
    18541 ttgatgattt aatattattt ttatcgttcg ggtttgtgct gggttgaagt gtcgggtttg
    18601 tgtcgggttt attctgaaca gacaaatccg aattggctaa taagcatttt aaaatgagtt
    18661 gtttaccaat agatttgatc tccactaacc cagcgcgctc aagcgcatag atgatacggc
    18721 gtaattgcgg acgactaggg ctacctgaat gttcaaaacc ttggtggggt tcaacataga
    18781 gggcttcagc aagctgttga tagctgattt tacgcttaac acctaccaga aaggtattac
    18841 ggtccatata cggacgaatc cccagcaaat aggctgattg ctggatataa ggtaacccca
    18901 tcagagctga taattcatcg gtattaacaa acaaaaatcc catttttcta tttcatccct
    18961 tcaaaagcac catcaaaaaa cagcgcttgc actatcaaat gatttcaatt agtatcaatc
    19021 aataacacga agtgtgttgt tgataaccca ttgtaaataa gcacttttta gtgtcaatgg
    19081 ggtatttccg tttgatagca aatgaaccta aatgaacatg aaaaaaatta ttggcagtag
    19141 gattgcacag gcaagaaggg cgaatggatt gacgattaaa gttttggctg ataggacagg
    19201 atttggggct gccaggattg ggaattggga gcagggaacc aggagtcctg ggccggaaga
    19261 ggctaagagc ttgtctaagg aattgcaggt tgcggcttct tggttgcttt gtttgacaga
    19321 tgacccatta ggtgaacgag ttgaaaagag cataattgcc aacacaaaat acgagtaaat
    19381 gttttcacaa gagcttattt tgaaagatca agaacaaata ttttagtttt atcagaaata
    19441 tctttataac attcattgag tttatttttc atttcttgta gagattgagg acgttttctt
    19501 ttccaagctt ttgggagttt agatgtggtt ttatttccaa accataatac taaataaaca
    19561 ccaaatccgt tggcatgata atctgttgaa taattttgta gttgatctat tgcggcagac
    19621 catagatcag tatgccattg accttttatt tctattggca catctaataa attataagta
    19681 ctaagaagat cacatcgttt atcatcagat ctagcgccct ctacgtgcgc gcgtgcatta
    19741 tatttttcaa gatgcggtgt tagtgctgat gctattagat cacgacaata attttcttta
    19801 tgtgggtttt cgttatccca ataaaattta aaatcacttg tttcactacc tttgagtctt
    19861 aactgtaata tttctaattg gtcaattagt aaggcttgta aatccttgtg tccggtgggt
    19921 tctttgctca gtaagatatt ttgtacatct tgtaatgaaa aatatttttt atagctttct
    19981 gatttatgct ttttattctc agttaacgca tgtttaagtt catcgcaata ttgacataaa
    20041 tcgtttttgt taatgagatc agaaattaaa tcttgtgctt cttgcgttgt aattaaagaa
    20101 agttcagtta tacatccttt aataagtctg gatgcatccc acggatgttg atttccttcc
    20161 caactgccag tggggtatgg caccggtggc catattgaac caaatttcaa aataaaaaaa
    20221 tataattgct gtgcattcat ctttggccaa taagttgaaa ttttcttatc aacgaagata
    20281 aactcactta atacccaaat acttatttta tcttctgaag tatattgatt gagtatttca
    20341 aaatgagatt caaagtccag aagaaaacaa gtgcttatcc aaatatcccg ttgagggcat
    20401 ttatcaaatt cttgcttact aatttgttct cgaattaact taataacatc attaggtgag
    20461 taacaaatag ctatggtaag gactgttttc aagctatcat aagctaattt ttggtaatta
    20521 ttaagccatt ttaaagctac ttttcctgct atatcctgga ataaactgtc agtttgaatt
    20581 cgatataatc caggaacata tctttcttca gaatataaat aaggttctat cgtttcataa
    20641 ataaaatttt cttttgacaa tgagtctttg aaaagaataa attcaagctc tttttgtaca
    20701 gaagaggata tatcattgct tttgaagcta gctccccaat gacaagcagc tagagctgaa
    20761 tgagcaatat ttaatggaat ttcgtctaac ttttcattgc gagataaaat aatatcgcag
    20821 tatgctaaaa gaatagcctc aaagggggaa atcaagtttt gattaatacg tagttgtatt
    20881 atctcatgga cggttggtat gttattttct tcaatagctg aacagattcc atttattgct
    20941 agtggtaaga gctctatacc taaaagttca actacacgtt ttttcggttc atttccctga
    21001 atatcactaa accaacctaa ataagctttc gctatttgat ttaagccatt tatatgtttt
    21061 cctgaaacta actgatctct aatttcatga tattgttggt gtctttctat tacttttttc
    21121 ttttgtctac tacgatgagc tgcttgcttt ttttcatatt gttcaatttc tttttttcca
    21181 ttagctcttt gcagttctat atcatgtata tgttttttta aatttatatt tagaatggct
    21241 tgatcctgag catgtttcaa agcagcacca gtaaaaggct gataggcaaa tatccaacga
    21301 actagttctt tccattttaa ttcgttatcc gacgtatgca gtcccataat attatcgaga
    21361 tgaaatatta tgtcttcctc tattacccat aaccatgtat gacttaaaca gaatattagc
    21421 cagagtttat ctggctttga gcttttaatt gcaactgatt gaagagatct acgataatca
    21481 gtattttcag ataaatattt agtaatttca tcatactcat tatgatgccg agaagcattt
    21541 gtttcaatta tgcttaacca agtccataat tcttgaggta caggtttaga aattcgtttc
    21601 attctctctt gagtaaactg taatactaat ctctttattt tgttttgaat tttttcattt
    21661 ttttctgatg atgctgagcc taattccttc agaaaagatc ggatacatcc ttcaatttgt
//
LOCUS       DACVWI010000034        21212 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.034, whole genome shotgun sequence.
ACCESSION   DACVWI010000034 DACVWI010000000
VERSION     DACVWI010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 21212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21212
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.034"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..250)
                     /locus_tag="JBH85_04945"
     CDS             complement(<1..250)
                     /locus_tag="JBH85_04945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945544.1"
                     /translation="MNEMDILSLFYDEMTARGVTREQVFLSIEEDAAAMLTQKLGKPV
                     SVEEAQKLTDICIANEWLERTTADPYYKYLSLTEAGLQM"
     gene            363..1544
                     /locus_tag="JBH85_04950"
     CDS             363..1544
                     /locus_tag="JBH85_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAU0945545.1"
                     /translation="MQEIDVLIIGAGAAGLMCAIEASKRKRKVLVLDHANKAGKKILM
                     SGGGRCNFTNYYIEPNKYFSHNPHFFKSALSRYTQWDFIELVNKHKIPFHEKTLGQLF
                     CDNKSKDIVDMLLKECEQYGVAIYLNTVIEKIQKTNDYSFKIGTTKGKFHCHSLVIAT
                     GGLSIPTMGASPFAYKVAEQFAIRVWPTRAGLVPFTLDVLEKDRLSILSGIGIDSLVN
                     NERNQFREHILFTHRGLSGPAILQLSSYWNPGESICINLLPEHNLLESLKTARAEAPH
                     KQLNSVLSMYLPKRVVEVFIPQKLGEKKLADSSNKDLETISHLLQNWVVKPNGTEGYR
                     TAEVTIGGVDCHAISSKTMEANNVPGLYFIGEALDVTGWLGGYNFQWAWSSGWAAGQV
                     V"
     gene            complement(1579..2331)
                     /locus_tag="JBH85_04955"
     CDS             complement(1579..2331)
                     /locus_tag="JBH85_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2628 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945546.1"
                     /translation="MAFIRHLLEYLLHPFFLCLLALGICIFLLYRRLAPTFTKVMLFV
                     VLIVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVKWVVVLGGGQNIGEEMPANDLLT
                     SASIKRLIEGVRLFRTLPDAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETV
                     SINTADQARELAAIVHDQPFYLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDT
                     WVKMVIPNSYNLAYTSIALHEILGKIWALGFR"
     gene            complement(2331..3401)
                     /gene="lptG"
                     /locus_tag="JBH85_04960"
     CDS             complement(2331..3401)
                     /gene="lptG"
                     /locus_tag="JBH85_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HAU0945547.1"
                     /translation="MSRKILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGRA
                     DYGIVQAGVFVLLQMPYQVYLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQIT
                     GAVLKASLIVILLITSLGETIVPVMAHYANEYKVSALTGGQALLTPRGVWVRNGNDFV
                     SIASVTHENTLRYVNQFRFDNQHNLKLARQISEVKYVNNSWIAYDVKQTEFAEDHTKA
                     HHFDTLPWDVPVKPEILKITGTNPDEMTLHELNRYLREQQRNHQNVANYKFAFFQRIT
                     QPLNTMVMMILAIPFIFGPLRSSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPE
                     LAAFSPTLIFSLIGIYLMRRVR"
     gene            complement(3398..4477)
                     /gene="lptF"
                     /locus_tag="JBH85_04965"
     CDS             complement(3398..4477)
                     /gene="lptF"
                     /locus_tag="JBH85_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HAU0945548.1"
                     /translation="MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIP
                     GFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHS
                     FAMATVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMPGRFHAINSGQQIFY
                     VQSMNRDHSQAEQIFMAKHSVQDNRLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQ
                     GVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRIS
                     IPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWI
                     GMWWVHVAVAILGILFIWRNQVKLA"
     gene            4647..6131
                     /locus_tag="JBH85_04970"
     CDS             4647..6131
                     /locus_tag="JBH85_04970"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HAU0945549.1"
                     /translation="MSFSSGAGKNIMNYGLTHTPSLTTSECLVLGVFSDLALPDFANA
                     IDNEQQGLIKKLCQRVPEPGNTVWQTDVEGHSLLIIQCGKKEEFSANSLQKRVGEITE
                     ALIKQRFSSATVCLPRLTQESAEWQIEQMIVQIDNLRYQLLDFKTKNAKSHKLESVIF
                     HLPGATEKSLEMAKAIVTGVEFCRDLANMPANICTPTYLGEQAILLSKQFDQISCQVM
                     GPEEIKEMGMGALLAVAQGSDQPPRLIDVHYHGNKNSAPVILVGKGITFDSGGLSIKP
                     ANAMDEMKYDMSGAASVLGVIKACALLKLPINLIGIIASAENLISGSAVKSGDIVTTM
                     SGQTVEIINTDAEGRLVLADALTYAERYNPDFVIDIATLTGAIIVALGNIATGYMTRD
                     EQLAKSIERAANESQDKVWRMPLDEAYQDALESPLADMINAGFDRSAGSITAACFLSR
                     FTEKYRWAHLDIAGTAWISGKKRNATGRPVPLLIQLLRHVANSR"
     gene            6112..6546
                     /locus_tag="JBH85_04975"
     CDS             6112..6546
                     /locus_tag="JBH85_04975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HAU0945550.1"
                     /translation="MSPIRVDFYLLASSLPESRWLVACRLIEKAYTKGHTIFVFCDNQ
                     QQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKEPRGFTDILLNLSTNIPI
                     FYTRFKRVIELVSNVEHEKEVSRLHYKEYRHKGCELHTHSIE"
     gene            complement(6685..7002)
                     /locus_tag="JBH85_04980"
     CDS             complement(6685..7002)
                     /locus_tag="JBH85_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1840 domain-containing protein"
                     /protein_id="HAU0945551.1"
                     /translation="MFVTFSCDAYENITYFENVAKQLLLLMGHGGTIPGAIKSENVPD
                     ALHHLQQGLEKIKSENKLLEDDEDSEPDISLAKRAIPLIHLLQAAEKKDCDVLWSHSK
                     SPG"
     gene            complement(7025..8389)
                     /locus_tag="JBH85_04985"
     CDS             complement(7025..8389)
                     /locus_tag="JBH85_04985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HAU0945552.1"
                     /translation="MQAEVFYKSCGDRIVPVHLISQSQWDEGIENLTPMERNCFSVRQ
                     FKGKLGDYCFILNADGVIEKAFIGSGTGNQESALANAALLLPPGNYQFQDKLSRESGV
                     VWALAQYRFDEYKKYELQPRVLIVEANDMDYILSLANSLFLVRDLINTPTCDMGPESL
                     AHVVEELAKTHKAYFKQWIGEELIKDNFPAIHAVGRASALTPRLLSLQWGNEKHPRVT
                     LIGKGVCFDSGGLDIKPSSGMRLMKKDMGGAAHVIGLAQWIMVQRLPIRLQVLIPAVE
                     NAIGPNAFRPGDVLTMRNGLTVEIENTDAEGRLILADALVKACEEKPDLIIDFATLTG
                     AARVAVGTEIAAMFSNHDQLAQDIVAASNKVSDPVWRLPLFSPYEELLNSNIADMSNS
                     SSSSYAGAITAGLFLQRFVTKSIPWVHFDIMAWNAVSKPGKPEGGEAMGLRAVAEYLL
                     QTYG"
     gene            complement(8394..9965)
                     /gene="murJ"
                     /locus_tag="JBH85_04990"
     CDS             complement(8394..9965)
                     /gene="murJ"
                     /locus_tag="JBH85_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HAU0945553.1"
                     /translation="MLTTDIMVPKKQSLIRSTSLVSLMTFISRMVGFARDMVLANFFG
                     AQAGMDAFFVAFRIPNFMRRLFAEGAFSQAFVPVLAEYQKTRSAEDVRTFIARISGYL
                     SSILTLVTVVGIVASPVIIFLFAPGFHHDSVRAELATQMLRITFPYLMLISLTAMAGA
                     ILNTYGYFGVPAFTPVLLNISMILAAVYLCPDLPQPVVGLAWGVLIAGIVQLLFQLPF
                     LYQRHLLIRPRVVRDDPGVNKVLKLMIPALFGVSIAQLNLMIDSIFASFLKVGSVSWL
                     YYTDRLTDFPLGVFGVAIATVILPHLSRKHTEQNINQYSRALDWGLRSILLIGIPAGL
                     GLSFFALPLIASCFAYGKFTAYDLLQTQKSLITLAMGVPAFMVVKVLASGFYARQDIS
                     TPVKVGAIAMVVNTLLCFIFVWHLAHAGLTLASALAGYVNCVILLFLLIKRGLFKPSP
                     GWLKYSMQLLIANFAIGVYLYFMSGTATYWLGFSPLMRLSLLLAHVFVTVVIYLLVLG
                     IIGLRPSHFRGQIKD"
     gene            10323..10589
                     /gene="rpsT"
                     /locus_tag="JBH85_04995"
     CDS             10323..10589
                     /gene="rpsT"
                     /locus_tag="JBH85_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HAU0945554.1"
                     /translation="MANIKSAIKRARQNVKLRQHNASARSMYRTYIKNVLKAVESGDQ
                     EAARAAYTKAQPVIDKAANKGLIHKNKAARIKGRLVARLKAMAA"
     gene            complement(10650..11861)
                     /locus_tag="JBH85_05000"
     CDS             complement(10650..11861)
                     /locus_tag="JBH85_05000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2637 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945555.1"
                     /translation="MFLTINDLQSQVQLAKKRLYALAKNWLDTQKEAINSKDKANWLN
                     AFQASTKEAMQEQLKATGFPLIRNAILVNQSEDELPQHSLEQSSSLIHSENFPEQFNS
                     RTVPRVIYVCHSGENNQVIKRLCQLTTLMEQLHTLEELTFEVQTNVHFRGLNLAYRMA
                     RSINKEWRDVEKGRETVEYYAERLQIAEKQYKLASDFCHECLGIYKEQLDARIMYFNE
                     SLNFFVECLVAAFSSVKDDRYWLTKFLLPSLPWHSMLNEVATWLFTTNGFTNPTIDSI
                     EVNRSHLKAITEQFAKLMMAPFCSLEKELQGKIEKVENEQKIARENVYAMSSELDIVI
                     HMQSQRKLAALLFPAQPLSMLGFFQGVAAAMGRDYFYSTFIKGNQSQEPRITDDEKPL
                     IEASNYSNGLH"
     gene            complement(12213..13595)
                     /gene="mavV"
                     /locus_tag="JBH85_05005"
     CDS             complement(12213..13595)
                     /gene="mavV"
                     /locus_tag="JBH85_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavV"
                     /protein_id="HAU0945556.1"
                     /translation="MKYAVTFCTTDQEVGSNPLWHSCLLLSKMDETSKLLEVVDNWGF
                     YGLPTTNRNSSWLDQLKIKMGLDVDLIGNHGMLRHEELRFLDQGCGLRGVTFELTKDD
                     FELLQKKCLQMATDQETAINEFVETQGIKGKPPEKTRIYPHEQFSRLIYATEKIKAEQ
                     QGREARLKPFELRLSWGLFGPSLALSQNCKTQALSLLSYVLSKEQIERLTEYGEHPTV
                     PRRSGPMESIFLHSTGPLREHRKSSGDVVHYRDLKDPGVKLYWTVPPQELEALSEETI
                     KLFQIDGEYCEEVKAIVRKLQRLEWLLINSNLPEKYRPYKDELINKVVGCYKAFSFIE
                     PKQEELKLGGWYGWALSLFSAPRSAEERTLQGKIKKAKSLFNSIYMAIVDNYQIDDNA
                     PMENKNILPYEETSENRFENMVEAVASYLSRKDKINLCKIIGRTYCEDHVELEDNEGK
                     IALSPQPLAT"
     gene            complement(14002..17604)
                     /locus_tag="JBH85_05010"
     CDS             complement(14002..17604)
                     /locus_tag="JBH85_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced entry protein EnhC"
                     /protein_id="HAU0945557.1"
                     /translation="MKSLVPWVCVLVASAGQQAFANEAFNAYRLGNYNEAAEPLIIKS
                     GQDAVAEYYLGRLYLYGYGQLKNNRVAMRYFTKSAEKGYLPAVLLMAKYSLLHEKNPE
                     EAARWFKQAAAVGDMSAQMFMAAAYLYGVGVKKNTDIARRYYIDAAKNGNPIAQYTLA
                     KYFLESKHAGNKKLGIIWLNKAAENGDPKALTELGRFYVAGQMVTKDTAKGVELLNKA
                     ASEQYAPAMLELGKLALMQNQYDEAIQWLNKAAKQSTEATLELAHIYLQDKSPVYDPK
                     TGFLFVLKAAQNGSVQAQKELANLYQKGIGVAADEELSKQWTLKAAENEKKNAEPPLL
                     AQAALWLSNDRTDKLEETAYQMNGIFSPWNNPSALRNNSYNQAPKLETISRQDIFKPQ
                     FELTQPNSIPISNYYDALISKQVEFQSNQWAYPTYRLNPFVEALERTNSPVVQKLNLP
                     VPYTDANYDDSEVGSFDLMDIWTGDWKRTVNYMSVVNYLYFRAILGNAQTQFEIGQLF
                     QYGIGLMQDDASAIIFYENAAEQKHLGAEYNLGILYLKRGKDENDYQQALNWLTDSAF
                     KGNKRAQYVLARILRQGIVGPDGKEYIKANDEQAMAMLYLSAANDYGPAEYELAEYLA
                     RDYNNGLSVDVRKQKIALIRKLYQGAVKNKVAEALLPLAFYNAMDDNRQKQEQAFKVA
                     EEQAETGNENAALLLGMLYDRGIGITADPAKAMYWYQQAGQNPVSQFILGTYITEGKG
                     VAQDKEKGLDLLRQSANSQFSYADFNLAVLKQQSGEDFLPNLIESYKLGNSHAGIVLA
                     DYYLSQSSAPEQMNQAKEIYKGLADKGDQYAQLKLAYMLQKGLGAAPDLAGAQHWYTA
                     SAEQGNPEAQYLLGQFYQLGETGEPDYNLAKYWYQKAAKHLSKADVALGFIYETVDDD
                     YAQALKAYENAAAKGDMLGAYNLALMYEYGKGVPVTYSKALSLFKEASEKGAPEAMSQ
                     LAGMYFYGLGQPRNEQQALVWYKKAASLGNGNALYALGLLSETGVGVKLDFPDALRYY
                     QDASDKGNEKAMLALARMYHYGLGVEKDHKRSASIYQKLAQKQNAYAQYQLGTYYIEG
                     TAGERLPEKGRELLQQASENGSLQARRVLQRLDAQTQGKVSYVEPVLFNNVPKFDGQS
                     ADMIYFDALNEWNHGEEVLSRMILQRLVTQYPNFIPAKRAYEQLNQAKLMNNLG"
     gene            complement(17631..18197)
                     /locus_tag="JBH85_05015"
     CDS             complement(17631..18197)
                     /locus_tag="JBH85_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase IV"
                     /protein_id="HAU0945558.1"
                     /translation="MNLKSRSSITAIVVILLTGALNISAYAAKSNKTATAEDKAEKKD
                     NGKFPLGCTAVGYQQNLKVLTLLPGKEGALQSMYFIYNTLPETVSLYQMHDKESLYSY
                     WLNHSIRGNSWAVLATGEKEVKFICTLGDGKKSYGKILDCADVIKVCEYVNVKFGLNN
                     KGNFWIVDSNTRNGAVSQVVHYGIIPGV"
     gene            complement(18194..18916)
                     /locus_tag="JBH85_05020"
     CDS             complement(18194..18916)
                     /locus_tag="JBH85_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAU0945559.1"
                     /translation="MKKILLTTFMMSMVTALNAGHFYGTALCAYPQYECIKVTGGQSW
                     EKLFPDPVQRDIVQRVNRTYNYLWSGREIAVPKNLANINIFDVSPFPLKIQSENEKQI
                     IVDQEKLAWGAYDAQGNLVWWGPISSGSDKCSDSNKVCRTLTGIFRVFSKENVRCTSD
                     VFPIGRGGAKMPYCMYFHKGFALHGSDDIPGVRASHGCVRMFIQDAKWLNENFVELSS
                     ERNNFMGTKVIVRPLNDSENKK"
     gene            19089..>21212
                     /locus_tag="JBH85_05025"
     CDS             19089..>21212
                     /locus_tag="JBH85_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAU0945560.1"
                     /translation="MSPLKSKIKTKSFNKLTKTQDITNTIERLFTNSQDSIIVFNQQG
                     KIIAINEKAAALFKKSPDKLIDKPIWKLFKLNSFAIKRQFIQAKRCFLLANEGIAQQF
                     TWLESKAQKPVLAYHILFNKTEIEDTSIIFTKLTDILKSKTIEWILWSLTKISNHQEI
                     NEIIDQILQLTSDVFAADYTSVSFINNQQIARTISYYKFGKKEENISFSLINTPCAKV
                     IQTKAICYFNDVQKQFPNDKLLKKMKINTYLAGPITNTQDEVIGIMTILCKRKVEFDT
                     LNNTLFGLFLSRINSEIERLINLRKLEFLASIPQQNPNPIIRILLNGDVVFTNDEGKI
                     ILNYWIKLFKELPVELLKEAQKIQNSNQSTRIEMEIEDKIYLFTLVWIDEFKQINIYG
                     TDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLDN
                     FKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVA
                     EKIINVLGKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYLSKKTGKNKC
                     TVFSKNLHYKENQRNEILKKDIELAALKRELYIDYQPQIDLSDNTIVGIEALLRWSHP
                     TLGLILPTEFIPIAEQTGCIHTISQWFIEQTLLDYSQFQQLSSNIKLSINVSLSQLND
                     TRFTKILCDSLLQNNLSKSKIILDIS"
BASE COUNT         6691 a         4551 c         3776 g         6194 t
ORIGIN      
        1 acatttgcaa accagcctct gtcaaagaca aatatttata ataggggtct gccgttgtgc
       61 gctcaagcca ttcatttgcg atgcaaatat cggttaattt ctgcgcttcc tctactgaaa
      121 caggtttgcc taatttctgg gtcagcattg ctgctgcatc ctcttcaata ctcaaaaaaa
      181 cctgttctct ggttacccca cgcgcagtca tttcatcata aaacaaagat aaaatatcca
      241 tttcgttcat agcaattcct tattattgga tactaagatc tatagcatat atttaatcat
      301 cgttcgacat gataaaatta aatacttttt aactaaaaaa ttggtcataa ccgaacctct
      361 ctatgcaaga aattgatgtc cttatcattg gcgctggtgc tgcaggccta atgtgtgcta
      421 ttgaagcaag caagcgtaaa agaaaagtac tcgtgctgga tcatgccaat aaagccggga
      481 aaaagatact catgtcagga ggtggtcgtt gtaattttac caattactac attgaaccca
      541 acaagtattt ttcccacaac ccccattttt tcaaatcagc cttatcccgt tacactcaat
      601 gggattttat tgaactggtt aacaaacaca aaattccctt ccacgaaaaa acattaggac
      661 aattattttg cgataataaa tccaaagaca tcgttgatat gttgcttaaa gaatgtgagc
      721 aatatggagt ggcgatttat ttaaataccg taatagaaaa aatacaaaaa accaacgact
      781 attctttcaa gataggcacg acaaaaggaa agtttcattg tcattctttg gtcattgcta
      841 ccggaggact ttctattccc acaatgggtg ccagtccctt tgcctataaa gttgcagagc
      901 aattcgctat tagagtatgg ccaaccagag ccggtctggt gccctttact ttagatgttc
      961 tcgaaaaaga cagattatcc atcctgtcgg gaataggtat tgatagcctg gtcaataatg
     1021 aaagaaatca atttcgtgag catatcttgt ttacccaccg gggactgagt ggtcctgcta
     1081 tcttgcaact ctcatcctac tggaatcctg gtgaaagtat atgcattaat ttgctgcccg
     1141 aacataacct cctggaaagc ttgaaaacag cccgagcgga agctccgcat aaacagttaa
     1201 actctgtatt atcgatgtac ttgcccaaac gagttgttga agtctttatt cctcaaaaac
     1261 tgggtgaaaa gaaactggct gatagctcta ataaagattt ggaaacaatt tcccatttat
     1321 tgcagaactg ggtagtaaaa cccaatggga cagagggcta ccgtacagca gaagtgacaa
     1381 taggcggagt agactgtcat gctatttcat ccaaaaccat ggaagccaac aatgtaccag
     1441 gcctatattt cattggagaa gccctggacg tgacggggtg gttaggtggg tataatttcc
     1501 agtgggcatg gtcttccggc tgggctgccg gacaagtagt gtagcgaatt taaaaaccaa
     1561 gtctcaatgc aaatcagctt atctgaatcc caaagcccat atttttccca ggatttcatg
     1621 aagagcaatg gaagtatagg ccaggttata agaattaggt atcaccattt tgacccaggt
     1681 atcagtagac caaaagaagg taaaatcagt tggggctgct atggggtgca atccttgctg
     1741 ctggcataat gccatggaac gtggcatgtg aatcgctgag gtaaccagat aaaagggttg
     1801 atcatgtact atggctgcta attcacgcgc ctgatctgct gtattaatag aaacagtttc
     1861 aacgacaact ttttccgaat cgattgcaaa ccacttggct aattctgtca ataataaagc
     1921 ctctgattgc tcaccagcag atcccccgcc cgataaaagc aattttgcgt cgggcaaagt
     1981 tctgaataat cggacgcctt caatcaatcg cttgatgctc gctgaggtca acagatcatt
     2041 tgcaggcatt tcctccccaa tattttgtcc tccaccgaga acgaccaccc atttcacatt
     2101 cggattaacc cgcttcacta tagggtatcg agactctaat tgataagtta aataactggg
     2161 taaccaaccc gtactcatag caagcaagac aatcaataca acaaacaaca taactttagt
     2221 gaaagtagga gcaagccgac gatatagtaa aaaaatgcaa atacctaatg ccaaaagaca
     2281 taaaaagaaa ggatgcagca agtattcaag caaatgtcta atgaatgcca ttatctgact
     2341 cttcgcatta aataaattcc aattaaagaa aagatgagag taggactaaa ggcagccaat
     2401 tcaggcggcc attggaatac tgtgctcact gggccaaaaa atcgattcag aatatgaaac
     2461 ccgaatccaa ccatagcgcc taccagtaat tttgaaccca tggttgatga acgtaagggg
     2521 ccaaaaataa aggggatagc taatatcatc ataaccatag tattcagagg ctgggtaatt
     2581 cgttgaaaaa aggcaaactt ataatttgct acattttgat ggttgcgttg ttgctcacgt
     2641 aaatagcggt tcaattcatg taaagtcatt tcatccggat tagtacccgt aattttaaga
     2701 atttccggtt tcactggcac atcccacggc aaagtatcga aatgatgggc tttggtatga
     2761 tcctctgcaa attcagtttg tttcacatca taagctatcc acgaattatt gacatacttt
     2821 acttcactta tctggcgagc cagttttaaa ttatgctggt tatcaaagcg gaattgattt
     2881 acatagcgca gagtattctc gtgcgtgact gaagcaatag aaacaaaatc attaccatta
     2941 cggacccaaa cccctcttgg agtcagcaaa gcctgccctc ctgttaaagc ggaaaccttg
     3001 tattcattcg cataatgcgc cattactggt acaatggttt cacctaaaga cgtgattaat
     3061 aggatgacta tcagagacgc ctttaatacc gcccccgtta tttggccgat ggatatcccc
     3121 gccgcacgca tcacaaccag ctcgctatga ttagctaata ctcccaggcc aaccaaacac
     3181 ccgagcaagc tggcaatagg gaaaaacaga tagacttggt aaggcatctg taaaaggaca
     3241 aaaacaccgg cttgtacgat tccatagtct gctcgcccca aatcgtctat ctgattaaca
     3301 aacaaaataa agatctgcaa accgaccagc atcaaagtca ccaagccgat tgcagataaa
     3361 accgttttgg caatataacg atcaagtatt tttctgctca tgcaagcttc acctgattgc
     3421 gccaaataaa taggatgccg agaatggcaa ccgccacgtg tacccaccac atccctatcc
     3481 accagggaat cttcccggta gcaatcgcat cacgagaaac aaacataaaa ttagcataaa
     3541 aaatatagat aatgatggct ggcaaaagtt tcgaatattt tccagaacga gggctgacac
     3601 gactaagtgg aacggcaacc agagtcaagg tcaaaaccat taaaggaatg gaaatacgcc
     3661 actgtaattc agccgccttt ttcaaatcat gattgttcaa aggccataag tctcttgttt
     3721 ttgcagtgcg agcatcatca tgcataacaa cagtcgggtt gggcaatttg gatttatagc
     3781 ttgcaaattc tgcaatctgg taatcggcat gacccggaac accttgatat tccttgccat
     3841 tttgcagcac gatgtattcc tcgcctgttt gaggattaac ctcagcaaat gctttatcag
     3901 cccacaacac atcccataac agcctattat cctgaacgct atgttttgcc atgaatatct
     3961 gttctgcttg ggagtgatcg cgattcatgg attggacata aaagatttgt tgaccgctat
     4021 taatggcatg aaagcgtcca ggcataatcg tttgaattaa agttttgatt cctgtagaac
     4081 gtattaactt gatgcgttca acagcaatca cagggcttgc ccaaatcatt acgatggcaa
     4141 ccactaccaa cacaacagta gccattgcaa agctgtgttt cagtaattgc ctggggccat
     4201 aaccacaagc tcgcagaacc gtcatttcgc tttcggcata taaccggcca tacgccaata
     4261 aaagagcgac ataaaacccc agtggcagta acagacccat taaatttggc aactccaaca
     4321 tcaacaactt catgatcaca aaaccaggaa ttgaaccaga agcagcgcga tttaagtatt
     4381 gtatgaattg attactcatg aaaataagga ctaatatcgc tgttaatgcg attaaagtaa
     4441 gaaacacttc tttagtcaaa taacgaaaaa taatcactac aataccctac agaggacctt
     4501 atcattaatt caattctttc agaataacat atgaaagaac ccatcatgat aattcaagac
     4561 agcctattta aaaatagtat tgatttaaaa cagatgatta aaacagaatt tttcattcaa
     4621 atgcttatcc aatttaggta aactagttgt ctttctcaag cggtgcagga aaaaatatta
     4681 tgaattatgg attaactcat accccctcat taaccacgag cgaatgtctg gtgttaggcg
     4741 ttttttcaga tttggcgcta ccagattttg caaatgcaat tgataatgaa cagcaaggcc
     4801 tgattaaaaa actttgccag agagtccctg aaccaggaaa tactgtatgg caaactgatg
     4861 ttgaaggaca tagcctatta atcattcagt gtggcaaaaa ggaagagttt agtgctaatt
     4921 cactccaaaa acgtgtagga gaaattaccg aagcattaat taaacagcgt ttctcttctg
     4981 ccaccgtgtg cttgcctcgg ttaactcagg aatctgctga atggcagata gagcaaatga
     5041 ttgttcaaat cgataattta cgatatcaac ttcttgattt taaaacgaaa aatgcaaaaa
     5101 gtcataaatt ggagtcggta atattccatc tgcctggagc tactgaaaaa agccttgaaa
     5161 tggccaaagc cattgttacc ggagttgaat tttgccgtga tttagcgaat atgccggcca
     5221 atatttgtac tccgacttac cttggtgagc aagccatttt attatccaaa caattcgacc
     5281 aaataagctg tcaagtgatg gggccagaag aaataaaaga aatgggtatg ggcgcattat
     5341 tagccgttgc ccaaggaagt gaccaacccc caagattgat agatgttcat tatcacggta
     5401 acaaaaactc agcaccggtc attcttgtcg ggaaaggcat tacttttgac tcaggaggct
     5461 tatctataaa gccggccaac gccatggatg aaatgaaata cgatatgtct ggcgctgcca
     5521 gtgtgctggg agttataaaa gcctgtgctt tgctgaaatt gccaattaat cttatcggca
     5581 ttatagccag tgctgaaaat ttgataagtg gctccgctgt aaaatcagga gacattgtaa
     5641 ccaccatgtc aggacaaact gtcgaaatta tcaataccga tgcggagggt cgattagtac
     5701 tagcagacgc tttgacttac gcggagcgat ataatcctga ttttgtaatc gatattgcta
     5761 ctttaacagg agcgataatc gtcgctttgg gcaatatagc tactggctat atgactagag
     5821 atgaacagct ggccaaatca atcgaacgtg ccgctaatga aagccaggat aaagtctggc
     5881 gtatgccact ggatgaggcc tatcaagatg ctttggaaag cccattggct gatatgatca
     5941 acgccggctt tgatcgcagt gcaggaagta ttactgccgc ctgtttctta tcacggttta
     6001 ctgaaaaata tcgttgggcc catttggaca tcgcgggaac ggcctggatt tctggaaaga
     6061 agcgtaatgc aacagggcgt cctgttcctt tattaattca attattgcgc catgtcgcca
     6121 attcgcgttg atttttactt attagccagc agccttccag aatctcgctg gttggttgct
     6181 tgtcgtttaa tagaaaaagc ctataccaaa ggacatacta tttttgtttt ttgcgacaat
     6241 cagcaacaag cagaatacct tgatgaatta ttatggactt tcaaagacga cagttttatt
     6301 cctcataatt tgcaaggtga aggaccggag cctcctcctc ccgtacaaat tggctatcaa
     6361 aaagaaccca gaggctttac agatatcctg ttgaatttat ccaccaatat tccaattttt
     6421 tatacccgat ttaaaagagt cattgaattg gtgagtaatg tagaacatga gaaagaagtg
     6481 agtcgattgc actataaaga atataggcat aaaggctgtg agctgcacac acactccatt
     6541 gaataaatac tcaactaccc gctggatttt taagcttatt atgcatccgc tccccaatgg
     6601 tcgctgctcg gattataata aataaaactg aatggcgacc attagggagc ggataaagaa
     6661 ggctggaaaa tatgctgtta catttcaacc tggtgatttt gaatgagacc acagcacatc
     6721 acaatccttt ttttcggcgg cttgcaataa gtgaattaaa gggattgctc gtttagccaa
     6781 actgatatca ggctcactat cctcatcgtc ttctagcagt ttattttcgc tttttatttt
     6841 ttccagccct tgttgtaaat gatgcaaagc atcaggtaca ttttcagact taatagcacc
     6901 ggggattgtg ccgccatgcc ccattaacaa caataattgt tttgccacat tttcaaaata
     6961 agtaatgttc tcatatgcat cacaactaaa agtcacaaac ataactagct cccaactgaa
     7021 aattctatcc gtaagtctgt aataaatact cagcaacagc tcgcaagccc attgcttcac
     7081 caccttctgg ctttcctggc ttacttactg cattccaggc catgatatca aaatgaaccc
     7141 atggtattga ttttgtcaca aatcgttgta gaaataagcc ggcagtaata gccccagcat
     7201 aggacgaaga actggaattg ctcatgtctg caatattcga attcaataac tcttcgtatg
     7261 gtgaaaataa aggcaaccgc cagacagggt ctgagacttt attagatgcc gctactatat
     7321 cctgagccag ttgatcatga ttagaaaaca tggctgcaat ttcagttccg acagcgacac
     7381 gagcagcacc tgttaaagta gcaaaatcaa tgatcaaatc tggtttttct tcacaagcct
     7441 taaccaaagc atctgccaga atcaatcgac cttctgcatc agtgttttct atttctacgg
     7501 ttaatccgtt gcgcatggtt aaaacatctc ctggcctaaa agcattcgga ccaatggcgt
     7561 tttcaacagc ggggattaat acctgtaatc gaatcggcaa acgctgaacc atgatccact
     7621 gggctaaacc tatgacgtgt gcggcgccgc ccatatcttt tttcatcaaa cgcatgcctg
     7681 atgaaggttt gatatcaagc ccgccgctat caaaacaaac accctttcca atcaaagtta
     7741 cgcgtggatg tttctcattt ccccactgca aggataataa acgaggcgtt aaagcagaag
     7801 ctcttccaac cgcatgaatg gcaggaaaat tatcctttat caattcctct ccaatccatt
     7861 gtttaaagta agccttgtgt gttttagcca attcttcgac aacatgagct aacgattctg
     7921 gccccatatc gcaggttggc gtgttaatta gatcgcgcac gagaaataaa gaattcgcca
     7981 aggataaaat ataatccata tcatttgcct caacaattaa aactcgaggc tgtaactcgt
     8041 actttttata ctcatcaaat cgatattgcg ctaatgccca aactacgcca gactcacgac
     8101 ttaacttatc ttgaaattga tagttccctg gaggcaataa aagtgctgca ttggccaaag
     8161 cactttcctg attgccagtt cccgatccaa taaaagcttt ttcaatcacg ccatccgcat
     8221 tgaggataaa acaataatcg cctaatttgc ccttaaactg gcgtacagaa aaacaatttc
     8281 gttccatggg ggttagattt tcaattcctt cgtcccattg tgattgagaa atgagatgga
     8341 caggaactat cctatcgccg caacttttgt aaaatacttc tgcttgcatc tttttaatcc
     8401 tttatctggc cacgaaagtg gctaggccta agccctatta tacctaaaac taataaatag
     8461 atgactacgg tgacgaacac atgagctaat aacaagctca aacgcatcaa aggagagaaa
     8521 ccaagccagt aagtcgctgt tccactcata aaatataaat aaaccccaat ggcaaaattg
     8581 gctatcaaca actgcatact gtatttcagc catccgggag atggtttgaa caatcccctt
     8641 ttaatcaaga gaaacagcaa aataacacaa ttcacataac cagctaatgc tgaagccaat
     8701 gtcaagccag catgagccaa gtgccagaca aatatgaaac ataaaagagt attaactacc
     8761 atggctatgg cacccacttt tacaggggta ctgatgtcct gacgagcata aaaaccagaa
     8821 gccaacactt ttactaccat aaaggcggga actcccatgg caagagtaat caagcttttt
     8881 tgagtttgta ataaatcata ggcagtaaat ttaccataag caaaacaact ggcaatcaga
     8941 ggcaaggcaa aaaaggacaa tcccaaaccg gctggaattc ctattaataa aatcgaacgc
     9001 agcccccaat ccaaagcgcg agaatattga ttaatatttt gttctgtgtg ttttcgggac
     9061 aggtggggca agataactgt cgcaatcgcg accccaaaga cacccaaagg aaaatcagtt
     9121 aatctgtctg tatagtataa ccaagagaca ctccctacct ttagaaaaga agcaaaaata
     9181 ctatctatca tcaagttaag ttgcgcaatt gaaacgccaa ataaagctgg gatcattaac
     9241 ttgagtactt tattgactcc tggatcatcc cgaacaactc tcggcctgat aagcaaatgt
     9301 cgttgataca aaaatggtaa ttgaaaaagc aattgcacga taccggcaat caacacaccc
     9361 catgccaaac caacaacggg ttgtggcaaa tcagggcaca aatacaccgc agcaagtatc
     9421 atactgatat taagcaaaac gggagtaaag gctggaaccc cgaaataacc ataggtattt
     9481 aatattgccc ctgccattgc tgttaaggaa ataagcatta aatagggaaa agtgatacga
     9541 agcatctgag ttgccaattc agcccggacg ctgtcatgat ggaaacctgg cgcgaataaa
     9601 aaaataataa caggcgatgc tacaattccc actacagtga ccagggttaa tatagaactc
     9661 aaatagcctg aaatccgagc gatgaaagta cgaacgtctt cagcagaacg cgttttttga
     9721 tattcagcca ataccgggac aaacgcttga gaaaaagcgc cttccgcaaa aaggcgccgc
     9781 ataaaatttg gtatcctgaa agcaacaaaa aaagcatcca tgccagcttg agccccaaaa
     9841 aaattggcaa gaaccatatc tcgtgcaaac cctaccatcc ttgaaataaa tgtcattaat
     9901 gaaacaaggg aagtggatcg tatcaagctt tgttttttag gtaccataat atccgttgtc
     9961 agcatgatgt tttaaataga taaaaatttt ctttatgata tacttaaact ggcgcgagtt
    10021 cgatataaaa agcatggaaa tacctcttat atctggttaa actggcatta tccagtaaaa
    10081 cacaacacat caggatatgg gttccactgc aaatgaagtc gagcatggta tcaaatgagt
    10141 aagtgaatca cctgaaatat tggttttaca ggatttatcc ggataataaa acatttcaac
    10201 atcaacctgc gttaaaacaa atacataaat acaaaaggtt caaagcaggt ctattgacaa
    10261 attctaactc attgtgcaag atctacatct tttgcaacat ctgattgagt ggagattttt
    10321 aagtggcaaa tatcaaatca gcgattaagc gtgcacgtca aaacgtcaaa ttgcgtcaac
    10381 ataacgccag cgcgcgttcc atgtaccgca cctacattaa aaacgtgctg aaagccgtag
    10441 agtcaggaga tcaagaagct gcgcgtgctg cttataccaa agcacagcca gtgatagaca
    10501 aagccgctaa taaaggctta attcataaaa acaaagcagc acgtattaaa ggccgtctgg
    10561 ttgcacgtct taaagctatg gctgcctaat cgagagtttc cgtcgctcta agttcgaaac
    10621 taccgaaccg gaattcccgg ttcggttccc tagtgtagcc cgttggaata attgcttgcc
    10681 tcgatgaggg gtttttcatc atctgttatc ctgggttctt ggctttgatt ccctttgata
    10741 aaagttgaat aaaaataatc tctacccatt gctgctgcaa ccccctggaa aaagcctaac
    10801 atacttaatg gttgagcagg gaacagcaat gcggctaatt ttctttgtga ctgcatgtgt
    10861 atcactatat ccaattccga ggacatggca tacacatttt ctctggctat tttttgctca
    10921 ttctctactt tttctatttt gccctgtaac tctttttcca aagaacaaaa aggcgccatc
    10981 atcaatttgg caaattgttc tgtaattgct tttaaatgtg agcgattcac ttcaatgctg
    11041 tcgattgtcg ggttagtaaa gccatttgta gtaaagagcc atgtggctac ctcattaagc
    11101 atgctatgcc aaggtaaaga gggtagtaaa aattttgtta gccaatacct gtcgtctttt
    11161 acagaggaaa aagcggcaac caggcactca acaaagaaat ttaatgattc attaaagtac
    11221 attatccgtg catccaattg ctccttataa atccctaaac actcatgaca aaaatccgat
    11281 gccaatttat attgtttttc tgctatctgc agacgctccg cataatactc tacagtttca
    11341 cgaccctttt cgacatcgcg ccactcctta ttgatactgc gtgccatgcg ataagccaaa
    11401 tttaagcctc taaaatgaac attagtttgg acttcaaagg ttaactcctc caatgtatgc
    11461 aattgttcca ttaaggtagt aagttggcat aatctcttga ttacttgatt attttctcct
    11521 gagtggcata cataaatcac tctgggcact gttcttgagt tgaattgctc ggggaaattt
    11581 tctgagtgga tcaaagacga ggattgctcc agactatgct gcggaagttc atcctccgat
    11641 tgattgacca atattgcatt gcggatcagg ggaaaacctg tggcttttaa ttgctcctgc
    11701 attgcttctt ttgtcgaggc ttgaaatgca ttgagccaat ttgccttatc ttttgaattg
    11761 attgcttcct tttgagtatc cagccaattt ttggctaaag catacagtct ctttttagcc
    11821 aattgaactt ggctttgtaa atcatttatg gttaaaaaca tccttttatg ctcacttgtt
    11881 tgcttgagtg tccttaatct atcactctaa aatacatact tcaatcaaaa aaattcattc
    11941 ataagcggat attttaatgc aaattgttta ttaataaaca acatggatta cgtaaaaaca
    12001 aaggtcaagg caaaaaacat ttttaatgag gtggttttta taaactaaat gactgaatta
    12061 aaaccatttt ttaacgaaga gattaagaga tttcataaat ccttttttat ttgatattaa
    12121 ttcctaaaaa gggttggtct ttatcagtcc ctcaacacca acccaagctg gaatcacaaa
    12181 aagctcatga actggaatct attccacaac ctctacgttg ccaaaggttg tggagataaa
    12241 gcaattttcc cctcattgtc ttctagctcg acatgatcct cgcaataggt gcgtccgata
    12301 attttacaaa gattaatttt atccttcctg gataagtaag aagctactgc ttccaccata
    12361 ttttcaaatc tgttttcgct agtttcttca tagggaagga tatttttatt ttccattgga
    12421 gcattatcgt caatttgata attatccaca atggccatat aaatgctgtt aaatagcgat
    12481 tttgcttttt taattttgcc ttgtaaggtt ctttcttccg cacttcttgg tgctgaaaat
    12541 aaagaaagcg cccagccata ccaacctcca agtttaagtt cttcttgctt aggctcaata
    12601 aaagaaaagg ccttataaca tccaactacc ttattgatta attcatcttt ataaggccga
    12661 tatttttcag gtaaattgct attgattaat aaccactcca ggcgttgcag ttttctgaca
    12721 attgccttca cttcttcgca atattcccca tctatttgaa ataatttgat tgtctcttca
    12781 gataatgctt caagttcttg cggaggaact gtccaataaa gctttactcc aggatccttc
    12841 aaatcacgat agtgcacaac gtctcctgaa gatttcctat gctcccgtaa aggacccgta
    12901 ctatgtaaaa aaattgactc cattggccca ctacgtctgg gcactgtggg atgttcacca
    12961 tattctgtaa ggcgttcaat ttgctccttt gataatacat aagacagcaa tgataaagct
    13021 tgtgttttac agttttgtga aagagctaaa ctaggcccaa acaatcccca ggacaaacgc
    13081 aactcaaaag gttttaagcg agcttcccgc ccttgttgct ccgctttaat tttttcagtc
    13141 gcataaatca atcttgaaaa ttgttcgtga ggataaattc tggttttttc aggtggtttc
    13201 cctttaatgc cctgcgtttc gacaaactca tttatcgctg tttcctgatc ggttgccatc
    13261 tgcaaacact ttttttgtaa taactcaaaa tcgtctttgg ttaactcaaa ggtaaccccg
    13321 cgcaaaccac atccctgatc gagaaatctg agctcttcat gccgcaacat tccatgattg
    13381 ccaatcaaat caacatccag ccccattttt attttcaatt gatctaacca agaactatta
    13441 cgattggttg tcggtaatcc ataaaatccc caattatcaa caacttccag caatttactg
    13501 gtttcgtcca tttttgaaag caatagacaa ctgtgccaca gtggattact ccctacctcc
    13561 tgatctgtag tacaaaatgt aacagcatat ttcatatcac caccctcatc gatttgtatc
    13621 taattatttg accttgatta aatagaactt ttgcccaagc cgattctttc attttattgc
    13681 tgctttgcaa acatttctgc gttgctcatt aactgcatta taaactccgc tcctcaaaac
    13741 gtttgtacct tgccctaaaa aataattggc ttagacataa agcctaacta acaatttaaa
    13801 tctctaaaag attattttta aaattacaat aagacatggc tacactttcg taaatagcca
    13861 agatgagcgc aatccttcat gtgtttaata taatcgaggc aacaaatgca ggctgggcct
    13921 tgtggcccag aaaaatcgga taattgatta gcaaaattga aacatcatct gttaaatggc
    13981 tcaaagagcc gagcaatgat cttaacccaa gttattcatt aatttggctt gattcaactg
    14041 ctcataagct cgctttgcag gaataaaatt gggatattgc gtcaccagac gttgcaagat
    14101 cattctggac aaaacctcct ccccatgatt ccattcattt aatgcatcaa aataaatcat
    14161 atcagcgctt tggccatcaa atttgggaac attattaaat aacacgggct cgacataact
    14221 tactttaccc tgggtttgtg catctaatct ttgcaatact ctacgggcct gtaaacttcc
    14281 attttcactc gcttgttgta atagctcacg gcctttttcg ggtagtcgtt cgcctgccgt
    14341 tccctcaata taataagtac ctaattgata ttgagcataa gcattttgct tttgtgccaa
    14401 tttttgataa atactcgctg atcttttatg atccttttcg acaccaagac cataatgata
    14461 cattcttgcc aaagccagca ttgctttttc attaccttta tcagatgcat cctggtaata
    14521 ccgtaaagca tctggaaaat ccaatttaac accaacacca gtttcggata ataaaccgag
    14581 ggcatacaag gcattcccat tacctaagct tgcagccttt ttataccaga ccaaagcttg
    14641 ttgttcgttt cttggttgcc ccaaaccata aaaatacatt ccagccaatt gactcatcgc
    14701 ttcaggagca cctttctctg atgcttcttt aaacaaagat aacgctttgg agtaagtgac
    14761 gggcacaccc ttgccatact catacattaa agccaaatta taagcgccta acatatctcc
    14821 ttttgctgct gcattttcat aggcttttag tgcttgagca taatcatcat ctaccgtttc
    14881 ataaataaaa cctaatgcta catcggcttt agataaatgt ttcgctgctt tttgatacca
    14941 atatttggct aaattataat caggctcccc tgtttcacct agttgataaa attgacctaa
    15001 taagtattgt gcttcaggat tgccttgttc tgccgaagca gtataccaat gttgcgcgcc
    15061 agcaagatcc ggtgcggcac ccaatccttt ttgtagcata taagccaact ttaattgtgc
    15121 atattgatcg cctttatcag ctaagccctt ataaatttcc ttagcttgat tcatttgttc
    15181 aggagcactg ctttgagata aataataatc tgccaatact atccccgcat gactattccc
    15241 taatttataa gattcaatta aattgggtaa aaagtcttcc cctgattgtt gcttaagtac
    15301 tgccagatta aagtcggcat aggaaaattg ggagtttgca gattgcctca gcaaatccaa
    15361 tcctttttcc ttatcctgtg cgaccccttt tccttctgtt atgtaagtac ccaatataaa
    15421 ctgacttacg ggattttgtc cggcttgttg ataccagtac atggccttgg ctggatcagc
    15481 tgttatgcct ataccacggt catagagcat tcccagtaaa agagcagcgt tctcattacc
    15541 tgtttcagct tgctcttcag ctactttaaa tgcttgttcc tgcttttgcc tgttatcatc
    15601 catcgcatta taaaatgcca atggcaacaa tgcctctgcc actttattct tcacagcacc
    15661 ttggtataac tttcttatta aggcaatttt ttgttttctg acatctacac ttaaaccatt
    15721 gttgtagtct cttgccaaat attctgccaa ctcatattct gccggaccat aatcattggc
    15781 cgctgaaaga taaagcatgg ccatagcttg ctcatcattt gctttaatat actcttttcc
    15841 atcaggacca acgatcccct ggcgcaatat ccgtgccaat acatattgtg ctctcttatt
    15901 ccctttgaat gcggaatcag tcagccaatt taatgcttgt tggtaatcat tttcgtcttt
    15961 accgcgtttc agataaagta ttcccaaatt atattcagca cctaagtgct tttgttctgc
    16021 ggcattctca taaaaaataa tagccgaagc atcatcttgc attaaaccaa tgccatattg
    16081 aaacaattga ccaatttcaa attgagtttg ggcatttcca agtattgccc tgaaatacaa
    16141 ataattgacc acagacatat aattgacagt ccgcttccaa tctcctgtcc aaatgtccat
    16201 caaatcaaaa ctgccaactt cgctatcatc ataattcgcg tcggtataag gaactggcaa
    16261 gttgagcttt tgtacaacag gactattagt cctctctaga gcttctacga atgggttaag
    16321 tctgtaagtt ggataagccc attgatttga ttgaaactct acttgtttac tgattaaagc
    16381 atcatagtaa ttgcttatag gaatactgtt aggctgagtc aactcaaatt gtggtttgaa
    16441 aatatcctga cgagagatgg tttcaagctt aggtgcttga ttatagctat tatttctcaa
    16501 ggcagacgga ttattccatg ggctaaatat accattcatc tggtaagccg tctcttccaa
    16561 tttatccgtt ctgtcattac ttagccataa tgcagcttgg gcaagaagag gaggctctgc
    16621 atttttcttc tcattttctg ctgctttaag agtccattgt ttagacaatt cctcatcagc
    16681 cgctacgcca atcccttttt gatataaatt ggctaattct ttttgagctt gaaccgaacc
    16741 attctgggct gcttttagta caaataaaaa acctgttttt ggatcataaa ctggactttt
    16801 atcttgtaaa taaatatggg ctaactcaag agtagcttct gtactttgtt tcgcggcctt
    16861 attaagccat tgaatagcct catcgtattg attttgcatt aaagccaact tacccaactc
    16921 aagcatggct ggagcatatt gttctgacgc tgctttattt aataattcaa cacctttggc
    16981 agtatctttg gtaaccattt gtccggccac ataaaatctg cccaattctg ttaaagcttt
    17041 tggatctcca ttttctgctg ctttattcag ccaaatgatc cctaattttt tattacccgc
    17101 atgcttactc tctaagaaat actttgctaa ggtgtattga gcaataggat taccattttt
    17161 tgctgcatca atataataac gtctcgcgat atctgtattt ttcttgacgc caacaccata
    17221 taaataagct gccgccataa acatttgtgc gctcatatct cccactgcgg ctgcctgctt
    17281 aaaccaacga gcagcttctt ccggattttt ttcatggagc aaactgtatt tggccatgag
    17341 caggacagca ggtaaatatc ctttttccgc tgatttggta aagtagcgca tcgcaacacg
    17401 attgtttttt aactgcccat atccatagag ataaagtcgc cctaaatagt attcggcaac
    17461 agcatcctga cctgatttaa tgattagggg ctcagctgct tcattataat tgcctaatct
    17521 ataagcattg aacgcctcat tggcaaaagc ctgttggcca gctgacgcga ctaaaacaca
    17581 cacccaaggt actagtgatt tcatgaagat tcccctcttt tcatggccat ttatacaccg
    17641 ggtataatgc cataatgcac cacttgacta actgccccat ttctcgtatt gctgtctact
    17701 atccaaaaat tacctttatt attcaaacca aatttgacat taacatattc gcatacttta
    17761 atcacatcag cacaatccag tatttttcca taggactttt tgccatcacc caaggtacag
    17821 atgaacttca cttccttttc acctgtggcc aaaacagccc aggaattccc tctgatagag
    17881 tgatttagcc aataggaata taaactttcc ttatcatgca tctgatataa gctaacggtt
    17941 tctggcaatg tattataaat aaaatacatc gattgcaagg ccccttcctt ccctggaaga
    18001 agagtcaata cctttaaatt ttgctgatag ccaacagcag tacagccgag aggaaatttt
    18061 ccgttatctt ttttctccgc cttatcttcg gcggttgctg ttttattgga tttggcggca
    18121 tatgccgata tatttagtgc accagttaat agaatcacaa cgattgcagt tatcgagctt
    18181 cggcttttta ggttcatttt ttattctcac tgtcatttaa aggacgtaca attaccttag
    18241 tccccataaa attgttacgc tcactggaca actctacaaa attttcgttt aaccacttgg
    18301 catcctggat aaacatacgc acacaaccat ggctagccct tacccccgga atatcatcag
    18361 aaccatgtaa agcaaaccct ttatgaaaat acatgcaata aggcattttg gcaccgcctc
    18421 tgcctatagg aaaaacatct gaagtacaac gaacattttc cttgctgaat acacggaaaa
    18481 ttcctgtcaa agtacgacag actttattgg aatcagagca tttatcactt ccagaagaaa
    18541 taggtcccca ccatactaaa ttgccctgag catcataggc gccccaagcc agcttctctt
    18601 gatccacgat aatttgtttt tcattttcac tctggatttt aagtgggaaa ggagagacat
    18661 caaaaatatt gatgttggct aaattctttg gtacagcgat ttctctgcct gaccaaaggt
    18721 agttataagt acgattgact ctttgaacaa tatctctttg gacaggatca gggaataatt
    18781 tttcccaact ttgtcccccg gttaccttaa tacattcata ttgaggataa gcacataatg
    18841 ccgttccata aaaatgccca gcgttaagtg cagtcaccat tgacatcatg aacgttgtta
    18901 atagtatttt tttcatggtg ccgccccctt atgcctgatt tttataattt tatgcaaaat
    18961 ttgtgctaaa aatgaaatgc cactcttttt atcttttttc ggttattttt aatttaagtt
    19021 tagacccata caaaaaaaaa ttgaaattat tgctatattt aaattagcat tgactgggtt
    19081 gaacactcat gagtccttta aaaagtaaaa ttaaaacaaa gtctttcaac aaattaacaa
    19141 aaactcaaga cattaccaac acgattgaaa gattatttac aaactctcaa gacagcatca
    19201 ttgtttttaa tcaacaaggc aaaattattg ctattaatga aaaagctgct gctttattta
    19261 aaaaaagccc tgacaaacta atcgacaaac cgatttggaa actatttaag ttaaatagct
    19321 tcgccattaa gaggcaattt attcaagcaa agaggtgttt tcttttagcc aatgaaggga
    19381 tagcccagca attcacttgg cttgaaagca aagcacaaaa accagtactt gcataccata
    19441 tcctgttcaa taaaacagaa atagaagaca catcaatcat ttttaccaag cttaccgata
    19501 ttctaaaatc gaaaaccata gaatggattt tatggtcttt aactaaaata agtaaccacc
    19561 aggaaatcaa tgaaattatt gatcaaattc tacaattaac cagtgatgtt tttgcagcgg
    19621 attatacttc tgtatctttc ataaacaatc aacaaattgc caggacaatc agctactata
    19681 aatttggaaa gaaagaagaa aatattagtt tttctttaat caatacaccc tgcgctaaag
    19741 taatccagac aaaagctatc tgttatttta atgatgttca aaagcaattt ccaaacgata
    19801 aattattgaa aaagatgaaa atcaatacct atctcgcagg cccaattaca aatacccagg
    19861 atgaggtgat tggcataatg actatcctgt gtaaacgcaa agtcgaattt gacacactga
    19921 ataatacctt gtttggttta tttttaagcc gaatcaactc ggagattgag agactgataa
    19981 accttagaaa attagagttt ctggcgagta taccccagca aaaccctaat ccaatcataa
    20041 ggattcttct caatggggat gtcgtattca ctaacgatga agggaaaatc attttaaact
    20101 actggataaa attatttaag gaacttccag tcgagttact aaaagaagca caaaaaattc
    20161 agaactccaa tcaaagcaca agaattgaaa tggaaattga ggataaaatc tatttattca
    20221 cacttgtctg gattgacgaa tttaaacaaa tcaatattta cggaactgat ataacccagc
    20281 tcaagaatac acaaaacgct atgttaaatc taacccgcag agatacttta actcaaatcg
    20341 caaatcgaca atattttgaa gaaaaactaa ttgaaaaaat atatgagcat catctgaaag
    20401 aaaaaagcct ggcattatta ttaatcgatt tagataactt taaaattgtt aatgatacat
    20461 tagggcatcc aacaggagac aaactactga tggctgttac caatagaatg acccgatgcc
    20521 taagagcaaa tgattttatt gcccgccttg gaggagatga gttcatcgtc cttcttgacc
    20581 aatgcaatac cgataccgca gttaaggttg cggaaaagat tattaacgtg ctcggcaaac
    20641 ctttccaatt tgatgaatat catatgacaa tcacagccag tattggcatt gccatctatc
    20701 ctgaaacaag tgaaatagcc agcgacttac taaagtacgc cgatattgca atgtacctat
    20761 ccaaaaaaac aggtaaaaac aagtgcactg tgttttcaaa aaacttacac tataaggaaa
    20821 atcaaagaaa tgaaattctc aaaaaagaca tagaattagc agcattaaaa agagagctct
    20881 atatagacta ccaaccccaa attgacttat ccgataacac aatagttgga attgaagctt
    20941 tattacgatg gtcacaccct actctgggtt taatattacc tactgagttt attcctatag
    21001 cagagcaaac agggtgtata cataccatca gtcaatggtt catagaacag acattacttg
    21061 attactccca gtttcagcaa ttaagttcaa acatcaaatt gtcgataaat gtttccttga
    21121 gtcaattaaa tgacacgcga tttactaaaa tattgtgtga tagtttattg caaaataatt
    21181 taagcaagag caagatcatt ttagatatat ca
//
LOCUS       DACVWI010000035        21176 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.035, whole genome shotgun sequence.
ACCESSION   DACVWI010000035 DACVWI010000000
VERSION     DACVWI010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 21176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21176
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.035"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            9..911
                     /locus_tag="JBH85_05030"
     CDS             9..911
                     /locus_tag="JBH85_05030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HAU0945561.1"
                     /translation="MMWNLSSRVHALNHFPKQGIECYVKRDDELGCGISGTKIRKYSS
                     LIPFLKIKGIRHLIIIAGAQSNNLLAALQVARECQLKVTAFLVKPKHLKIQGNFKLSL
                     LFLHENEIIWINREEWYRVNEFAEQYLEGLRETAYILSEGASVKESMKGAMSLASDIK
                     ENEKILGFAFDHIFVDAGTGFSAIALIKGFYELQHKGFIHVLLLADSEEVFKKKLMHW
                     AGVNPDNYACFYPTTAKSFGSVNQTIKQEIKRLAYEEGILADPIYSAKLFYEARRYIE
                     KYELKGKVLIVHSGGILTMPGFAF"
     gene            1124..2701
                     /locus_tag="JBH85_05035"
     CDS             1124..2701
                     /locus_tag="JBH85_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosyltransferase Lgt1"
                     /protein_id="HAU0945562.1"
                     /translation="MKARRDQQLSKLRMRFFSALNHTSEIDLQVLFNDLKSILTLDSI
                     EHLKEGSVAYAIIQELLKQDDAQNKIQSFLHGAIKNVIHPGVIKGLTPDEINWNVAKA
                     YPKYYEHEEFPDVTFGGFKVRDSNEFKFKTNIQTSIWFSIKPDLFMPSKQQEALKRRR
                     EQYPGCEIRLIYSSSLLNAEANRQMKAFARKQNISLIDIDSVKTDSPLYPLLKAELAH
                     LGKGGNPAAASDLCRWIPELFNEGFYVDIDLPVDSSKIVEGHQITGGVPIMLNMGSII
                     SEPIAPHHRRQEAVCMNTDIIAYSNDKRTQKMMDTVARYLKNIYDDPYTALKDTPLAQ
                     TAFFNKCQEERKSIFDLRKGLQDAFRSDSLLQLYDFLGADKFKEVFKLKEAQSKYINE
                     HISEFSEKDLLLNLISDKPSEISQHTLDFVKAKAMYIDIAKEHYSAFYKPLVEEISGP
                     GAIYNALGGAGSFTTTHRRLTGPMLPTTPPRVLQVFCDAHDKGPFVSDNIARWQTNVR
                     DLGVLNREGLSWLPSVG"
     gene            2902..4773
                     /gene="htpG"
                     /locus_tag="JBH85_05040"
     CDS             2902..4773
                     /gene="htpG"
                     /locus_tag="JBH85_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HAU0945563.1"
                     /translation="MVSKQQTMGFQTEVKQMLHLVVHSLYSNKEIFLRELISNASDAL
                     DKLRFLALSNGSLFENDSDLKISIQINEKLQTITISDNGIGLSWEEAVENLGTIAKSG
                     TKEFISQLTGEQAKDSQLIGQFGVGFYSAFIVADKVTVKSRRAGLQPEDGIVWESKGD
                     GEFTIGYEKKSTRGTEITLHLKPENDEFLSDWRIRGIISKYSDHICWPIVMKKLSEEG
                     KESKEFETVNKATALWTLQKSEISEEDYKQLYKHISHDYMDPLTWSHNHVEGKHEYIT
                     LLYIPAHAPFDLWQHEAKHGLKLYVKRVFIMDEATQFLPRYLRFVKGIVDASDLPLNI
                     SREILQDNKQVESIRAACTKRVLSMLEKMATNDKETYQKFWNEFGLVLKEGPIEDFAN
                     KEAIAKLLRFSTTASGSEKQEVSLEEYVSRMKEGQDKIYYITASSYNAAKNSPHLEIF
                     RKKGIEVLLLSDKVDEWLVGYMNEFAGKKLQSISKGKVELGDDETSEQIKEQEKTLEP
                     LIKHIKSVLNERVKDVLLTNRLTDSPACVVADEQDMGLEMQRILQAAGQQVPVSKPIF
                     EINPDHALIKRLHDIQDDNQFELWVTMLFEQAVLAEGGQLDNPADFVNRVNRLLVSS"
     gene            complement(4885..5181)
                     /locus_tag="JBH85_05045"
     CDS             complement(4885..5181)
                     /locus_tag="JBH85_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HAU0945564.1"
                     /translation="MNVIDTQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYD
                     MILSEVEPPLLQAVMEKRRGNQLQAAKMLGISRGTIRKKLQRYFGTKYFRLTEE"
     gene            complement(5297..6451)
                     /locus_tag="JBH85_05050"
     CDS             complement(5297..6451)
                     /locus_tag="JBH85_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lipid-A-disaccharide synthase 1"
                     /protein_id="HAU0945565.1"
                     /translation="MPNASRVVIVAGEESGDHHAAELVKQLKAVYPDLEISGIGGKHL
                     RAAGVHLISDLTRYAVTGLTEIIPFLKIFRKAFQDIKQHLSTQKPDLLILVDYPAFNL
                     RLAKYAKKKLGIKIIYYISPQIWAWKGKRIHLIKDCIDKMAVIFPFEKTIYENAGVPV
                     SFVGHPLVKKIAAAKDKHSGRTSLGLPLNEPIIALLPGSRHSEIERHIPILVNTAKLL
                     TLDNPKLRFVVPIAGTINPDKVKAYFSNQNLTVTFIQGQAIECMSAADFVIVASGTAS
                     LECALLEKPMCIIYKSSFLTYVAAMYFIKVKFLGLCNLLANKMMVPEFLQYDCNAIEL
                     SRYISNFHNDPNQAKSMINQLAKLKESLSSSQADCSLFDLVVAELPEKNA"
     gene            complement(6438..7400)
                     /locus_tag="JBH85_05055"
     CDS             complement(6438..7400)
                     /locus_tag="JBH85_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAU0945566.1"
                     /translation="MNKIRCAVIGVGYLGRFHAQKYQLIPNAELVAVCDVNSTVCEVV
                     SSELNVPAYINYHDLFGKVDAVSIAATTNKHFEIAKFCIQHGIHVLIEKPITETVSQA
                     EELIRLAKQHQVKLQVGHLERFNSARLALDEYLELPLFIESQRLAPFNPRGTDVNVIL
                     DLMIHDIDIIQNIVQSPIKSITAQGAPVLTKAIDIANARISFANHCVANVTASRISFK
                     TERKTRIFQENSYISIDYQNKQLAVFKKGTGEMFPGIPDITRDQREFEKGDALLEEIR
                     AFLNCIENDSVPLVTGEEGRDALKTAEQITALINNNLVERYAEC"
     gene            7412..7624
                     /locus_tag="JBH85_05060"
                     /pseudo
     CDS             7412..7624
                     /locus_tag="JBH85_05060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014841525.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7621..8196
                     /gene="rnhB"
                     /locus_tag="JBH85_05065"
     CDS             7621..8196
                     /gene="rnhB"
                     /locus_tag="JBH85_05065"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HAU0945567.1"
                     /translation="MNTVLKILMAGVDEVGRGPLAGAVVTAAVILKKPIDGLTDSKKL
                     SPKQRNLLAIRIKEEALAFAYGRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFV
                     DGAFTPQLNIPCKAIVQGDSLIPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGY
                     ATPVHKEALMRLGPCKIHRRSYSPVADLISK"
     gene            complement(8307..9425)
                     /gene="rodA"
                     /locus_tag="JBH85_05070"
     CDS             complement(8307..9425)
                     /gene="rodA"
                     /locus_tag="JBH85_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HAU0945568.1"
                     /translation="MSRQTTKPVYRFTAKSLHLDFPLLGLILTLIAFGLLILYSASNA
                     NMGMIMRQSMRLLFAFLIMFVLGFIPPHKYKIWTPWIYGVGLSLLIAVMLMGKIGKGA
                     QRWLELGLFRFQPSEIMKLAVPMMAAWFFDRQSHPSSIRSIGIASLIIFIPALLIAKQ
                     PDLGTAIMVTVAGLCVVFLAGIRFKIILLIALLMCSAIPVVWNLMHDYQKQRVYTLID
                     PEQDPLGAGYHIIQSKIAIGSGGLMGKGWLKGSQSHLNFLPEHATDFIFAVSGEEFGF
                     AGGFAIVALIVLISLRSLNIANNAQTTYTRLLSASLAMTFFLSAFVNIGMVMGIIPVV
                     GIPLPLVSYGGTAMVTFLASFGILMSISSHRILFNSLN"
     gene            complement(9422..11302)
                     /gene="mrdA"
                     /locus_tag="JBH85_05075"
     CDS             complement(9422..11302)
                     /gene="mrdA"
                     /locus_tag="JBH85_05075"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HAU0945569.1"
                     /translation="MFCHTTFSAMYRNQSFKNYRAESQHQRFRLNLLIAILIILSLIL
                     ILRLAFLQISEFKRYQTLSLKNQMSVIPIAPPRGVILDRNGVLLAENIPVYVLEITPE
                     RVKDMKQTLTKLRELIPSITDEDIDSFNKTRLQNRSFVPIPIKLKLSQEEVATFASNQ
                     YHFPGVSIKARLMRHYPLGEITAHALGYVGRINIQELKQVDSTNYRATNFIGKAGIEK
                     YYEDILHGKVGYQMVETDVSGRTLRIINKVNPHSGAKLYLSIDARLQEAAYNALKDKR
                     GAVVVINSRNGEVLAMVSSPSFDPNIFVSGVSKADYKVLSNALQRPLFNRAVRGVYPP
                     ASTIKPFVGLAGLDKGFITTTTEIYDPGKYKLPTSSHVYRDWKKTGHGVINFKRAITV
                     SCDTFFYQLGNKMGISNIEDMLVKFGLGQLTHVDLHEEANGVIPSARWKRQTKGVSWY
                     PGDTLISAIGQGFMLATPLQMANATASLSQHGQRFRPHLLIKTVNSDTNEMEEYKPFE
                     EYPVSLRDEANWDVVIDAMHSVLTSNEGTGYRFGRNPPYPVAGKTGTAQVYSGRQYEK
                     AKYEDIPEHLRDNSLFIAFTPVEKPEIAIAVVVENDTIASTVARKVLDTYYQLYPIKK
                     TP"
     gene            complement(11442..11912)
                     /gene="rlmH"
                     /locus_tag="JBH85_05080"
     CDS             complement(11442..11912)
                     /gene="rlmH"
                     /locus_tag="JBH85_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HAU0945570.1"
                     /translation="MLKITIITLGNKMPDWVNSGVNEYAKRFHDGIQIKLIEIPLLRR
                     NKSSDLARILEKESALTKDALPANARLIALDMLGKSFSSEELALRLTQLQQISSHLCF
                     IIGGPEGLSNEILTLCDERWSLSKLTLPHPLVRIILLESLYRAWSIINNHPYHK"
     gene            complement(11921..12259)
                     /gene="rsfS"
                     /locus_tag="JBH85_05085"
     CDS             complement(11921..12259)
                     /gene="rsfS"
                     /locus_tag="JBH85_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HAU0945571.1"
                     /translation="MLEKNPTLEKLLKSLEDIQAIDIKIIDVHKQTTITDFMVVTSGR
                     SSRHVKSIAQKVLEDMKVAGLPCLSSTGIEHGDWALIDFGDIILHVMQPEFRHFYNLE
                     GLWEEHPGNS"
     gene            complement(12364..13806)
                     /locus_tag="JBH85_05090"
     CDS             complement(12364..13806)
                     /locus_tag="JBH85_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HAU0945572.1"
                     /translation="MEKHPKSLRIYFTTEMWERYGFYAVQSLLALYLALHFKWPDKEI
                     YSLVGSFTALTYLSPLVGGWIADKLIGQKRAILLGAIVLFLSYCMLSLIDNSLALTSS
                     LAGVAVGTGLLKPNISSLLGNEYPVGSTKRESGFTIFYMGITTGIILGTTLPSKFNEY
                     FGWSASFTSASIGLIIAFVVFLFGIHQYKIKDYNPFVLQPGKIISAFVLLVLLWSLSF
                     YILSSPQLANIMFGLVVLFSASYILYSVNRESANQSRQTLVIGLLCIISVIFWAFYFQ
                     MFMSLTLFIARVVEPSFLGIDFPPPYYITVQSIGMLIIGYFLAKKHRSLTMIERGLST
                     GKKFVLAMVFMTLAYSIIAFVSTVVDKSILISPLLIIPAYLMISLAELLLSPVGLSAI
                     TVLADKNKVSTMMGIFFVSLGIGGFLSGKLADLTAIPTGETNIIVLKTLYATAFTQQL
                     SILFIATLGCLVLFAVIKFLLTHIQICEKQ"
     gene            14026..15693
                     /locus_tag="JBH85_05095"
     CDS             14026..15693
                     /locus_tag="JBH85_05095"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HAU0945573.1"
                     /translation="MMNKDKNKRVISAPRGTEIQAKNWLTEAALRMICNNLDPNVAED
                     PDSLIVYGGLGKAARNWECFDEIVHVLKLLNNDQTLLIQSGKPVGVFTTHEEAPRILI
                     ANSNLVPRWATWEHFNELDKKGLMMYGQMTAGSWIYIGSQGIVQGTYETFVAAAKKHY
                     QGDLSGRWILTAGLGGMGGAQPLAGTMAGASVLAVECDRQRIEKRLQTKYLDRYTDNL
                     SEALDWINESCRRKKPVSVAVLGNAAEIFPQLVKLGVQPSLVTDQTSAHDPLNGYLPL
                     GWTLEQAVEMRKKSPEEVVDAAKKSMAVQVHAMLEFHNRGIPVFDYGNNIRQMAFEAG
                     EKNAFSFEGFVPAYIRPLFCEGIGPFRWVALSGDPEDIYATDERVKQLIPDAPHLHHW
                     LDMAREKISFQGLPARICWVGLKDRARLALAFNEMVKNKQVKAPIVIGRDHLDSGSVA
                     SPNRETEGMLDGSDAVSDWPLLNALLNCASGATWVSIHHGGGVGMGFSQHAGVVIVAD
                     GTEKAAKRLARVLHNDPATGVMRHADAGYQIAKQCAKENSLWLPMES"
     gene            15620..17227
                     /gene="hutH"
                     /locus_tag="JBH85_05100"
     CDS             15620..17227
                     /gene="hutH"
                     /locus_tag="JBH85_05100"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HAU0945574.1"
                     /translation="MLMQVIKLPSNVPKRTRFGYPWNLKRSRFMSEQFILQPGQLSLL
                     SIKQILDEELSCVLAENSFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSDC
                     LKELQRNIVLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHK
                     VYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVRHQGQVISAEEGLKLAGLKPLELEA
                     KEGLALLNGLQVSTALALSALFISETLFETAIISGSLSVDAASGSDVPFDDRIHQIRG
                     HQAQISAASMYRNLLAGSQIRESHRHCNRVQDPYSLRCQPQIMGAILHQMQFVGQTLQ
                     VEANAISDNPLVFAEQGDILSGGNFHGEIIAMAADNLALALSEIGGSAERRIALLIDK
                     NFSGLPAFLVRESGLNSGFMIAHVTAASCASDNKALAHPHSVDSLPTSANQEDHVSMA
                     TSAARRLHEMIDNTSTILAIELLAACQGLEFHKPLKTSPQLDKIYQSVRSVVKEYDKD
                     RYFAPDIEKIKKKILDKEFSLLTLTNE"
     gene            17241..18644
                     /locus_tag="JBH85_05105"
     CDS             17241..18644
                     /locus_tag="JBH85_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coniferyl aldehyde dehydrogenase"
                     /protein_id="HAU0945575.1"
                     /translation="MELMAEYLTLHQQHKNNPYPSLSERKKLLIAIKKILQTEAYTLA
                     EAINKDFTHRSVEETLFLEVFPTIKAINFCLKNMKKWMRKRRRNVSWLFIPAKAYVIP
                     QPLGVVGIMVPWNYPVYLALVPAIYALAAGNRVMIKMSELSPHIGDTLLKLMHAAGLN
                     HSIRVINGDIELSKQFASLPFGHLMFTGSTNVGKMVMKAASDNLIPVTLELGGKSPAI
                     LSPTMNPAYFKRLFMGKLFNAAQTCIAPDYLLIPKGWEDRVEREFRKFINAFYPDLMS
                     NEQYSSIISERHKKRLLDLVEDARSKGARVVEFGHSIPNCSKLPVFLLFDITNDMLVM
                     KEEIFGPILPVLTYNSINDAVDYINSSPNPLALYYFGEDKSEIKIIQTKTLSGALTIN
                     ETLMHIAIDDLPFGGVGHSGMGHYHGKEGFDTFSKLKPVLVQRFISTVSWLYPPYGAL
                     MRMFLAWVGGIKLKEKS"
     gene            18641..19450
                     /locus_tag="JBH85_05110"
     CDS             18641..19450
                     /locus_tag="JBH85_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0945576.1"
                     /translation="MSKVIFITGGSRGIGREIALKFAAKDKANIVIAAKTAEPHPKLE
                     GTIYSVANEIEELGGKALPLMVDVRDEQQIQNAITKTIETFGRLDVLVNNASAINLTD
                     TLNTPMRRYDLMQSVNVRATFACSQAAIPYLLKSENPHILTLSPPLNMDKTWFAPHLA
                     YTISKYGMSMCTLGLAEEFKEAGIAVNSLWPKTTIATDAIRVHFPSELYMASRKPLIM
                     ADAAYWIINQPSKSITGNFFIDEDVLKNSGVTDFSCYAMNPKAQLCPDLFL"
     gene            19447..19878
                     /gene="rnhA"
                     /locus_tag="JBH85_05115"
     CDS             19447..19878
                     /gene="rnhA"
                     /locus_tag="JBH85_05115"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HAU0945577.1"
                     /translation="MKVEIYTDGACKGNPGPGGWGVLLRYNGREKTLHGGEAQTTNNR
                     MELMAAIKGLEALKRPCEVDLYTDSQYLQQGMKEWIKTWKRNGWRNSKKELVKNAELW
                     KSLDNLASIHNIHWHWVKGHSGHLENDLVDALANLGIEELS"
     gene            19829..20584
                     /gene="dnaQ"
                     /locus_tag="JBH85_05120"
     CDS             19829..20584
                     /gene="dnaQ"
                     /locus_tag="JBH85_05120"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HAU0945578.1"
                     /translation="MIWLMLWQIWVLRNYHRVMRQVILDTETTGIGPEQGHRVIEIGC
                     IELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEFLQDKPLFQDIVTEFIQFVEGS
                     ELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRY
                     EIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVESSLSQSKIKTQEIKSLSLKK
                     PVIMKANEEELMQHQSFVEFISKKSGINHWEEV"
     gene            complement(20791..21168)
                     /locus_tag="JBH85_05125"
     CDS             complement(20791..21168)
                     /locus_tag="JBH85_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945579.1"
                     /translation="MSRKLLIATTLVLSTSLFPLISNAEDTANPNEMTKDAWLNSMTP
                     LLPDLICKGFIQDPDLKKRFDEIKMTYEQCVTLIPESTKKCQDELYASMPDKINSETA
                     GTWGRSLGECIGKDFAEKHLIPK"
BASE COUNT         6643 a         3701 c         4370 g         6462 t
ORIGIN      
        1 aaaggtattt gatgtggaat ttgtccagtc gggtgcatgc cctgaatcat ttccccaagc
       61 aaggtataga gtgttatgtt aagagagatg atgaattagg ttgcggcata agtggtacaa
      121 agataaggaa atacagcagt ttaatcccgt ttctaaaaat caagggaatt cgacatctca
      181 ttattattgc gggtgctcaa tctaataatt tattggctgc tctgcaggtg gccagagaat
      241 gtcaattgaa agtgacagcc ttcctagtaa aacccaaaca tttaaaaatc cagggtaatt
      301 ttaaattaag ccttcttttt cttcatgaga atgaaattat ctggataaat cgagaagaat
      361 ggtatcgagt caatgaattc gctgagcagt atcttgaggg gctcagagaa actgcttata
      421 ttttatctga aggtgccagt gttaaggagt ccatgaaggg ggcaatgtct ctagccagtg
      481 atatcaagga aaatgaaaag attttgggat ttgcttttga tcatatcttt gttgatgcag
      541 gtacaggttt ttcagcaatc gcgctaatta aaggttttta tgaattacag cataaaggat
      601 ttattcatgt gttattgtta gcagatagtg aggaggtttt taagaaaaaa cttatgcatt
      661 gggcaggagt aaaccctgat aattatgctt gcttttaccc aactactgcg aaatcgtttg
      721 gatctgtaaa tcaaacaatt aaacaagaaa ttaaacgatt ggcttatgaa gaaggcattt
      781 tagctgatcc gatttactct gcaaaattat tttatgaggc cagaaggtac atagaaaaat
      841 acgaattaaa agggaaggta ttgattgtac attctggtgg tatattaacc atgcctggct
      901 ttgctttttg aataggcctg cttcttggca aagacgtaat ttctgaatta tcacgttttc
      961 ctgactgcaa aattaagttc atcaaggata ttcagtatat ttcagtacat aatgcgattt
     1021 ttttcctgaa tatccctgtc tcgattatct actatactta ttaattataa aaataaaaac
     1081 cgttcttttt aagaaaagtt atcttatatg ggagacgagt atcatgaaag caagaaggga
     1141 tcaacaactc tctaaattgc gaatgagatt tttttcagcg ctcaatcaca catctgaaat
     1201 tgacttacaa gtgcttttta atgatttgaa atcaattctc acactggata gtattgagca
     1261 tctcaaagaa ggctctgtag cgtatgcaat cattcaagaa ctcttgaaac aggatgatgc
     1321 tcaaaataag attcaatctt ttttacatgg agcgatcaag aatgttattc atccgggtgt
     1381 catcaaaggg ctgacccctg atgaaattaa ctggaatgtt gccaaagcat acccgaaata
     1441 ttatgagcat gaggaatttc ctgatgtgac ttttggcggc tttaaagtac gtgatagtaa
     1501 tgaatttaaa tttaagacga atatacaaac ttcgatatgg tttagtatca agcccgatct
     1561 tttcatgcct tctaaacaac aggaggcttt aaaaagaaga agggaacaat accctggttg
     1621 cgaaattaga ttaatttatt ccagttcatt gctaaatgca gaagcaaacc gccagatgaa
     1681 ggcatttgcc aggaaacaaa atatttcatt aattgatatc gatagtgtta aaaccgattc
     1741 accattatat ccattactaa aagctgaact tgcacatctt ggaaaaggag gaaatcctgc
     1801 tgctgcctcc gatctgtgtc gctggatccc tgagttattc aatgaagggt tttatgtgga
     1861 tattgatctc cctgttgata gttcaaaaat agtagaagga catcaaatta caggaggagt
     1921 tccaatcatg ctcaatatgg gctccattat cagtgaaccc atagctccac atcatagaag
     1981 gcaagaagct gtttgtatga atacggacat tattgcttat tccaatgata aaagaactca
     2041 aaaaatgatg gatacggtcg cccgatattt gaaaaatata tacgatgatc catatacagc
     2101 attaaaagac acacctcttg cgcaaacggc tttttttaat aagtgccaag aggaaaggaa
     2161 aagtatattt gatttaagaa aaggattaca agatgcattt cgctccgatt cattattgca
     2221 attatacgac tttttagggg cagacaaatt taaggaagta tttaaattaa aggaagctca
     2281 aagcaaatac attaatgagc atataagtga atttagcgag aaggatctgt tgttaaattt
     2341 gatttctgat aaaccttccg agattagtca gcatacactt gattttgtca aggctaaagc
     2401 aatgtacata gatattgcca aagagcacta ttctgcattc tacaaaccat tagtcgagga
     2461 gatttcaggg ccaggtgcca tttataatgc tttaggagga gcgggcagct tcactaccac
     2521 tcataggcgg ttaacaggac ctatgttgcc aacaacccca ccacgtgttt tacaggtatt
     2581 ttgtgatgca catgacaagg gtccttttgt ttcagataat attgcgcgtt ggcaaaccaa
     2641 tgttcgagat ctgggcgtgt tgaatcgaga gggtttgagt tggttgcctt cagtagggta
     2701 gcttaatttc aacacacaaa ttttgaatat tgtctcaagc attagcaata tgaataatca
     2761 ccaatagata aaagacttta ttggtgatta gtttttttgc tggtttcctc ttttttagcg
     2821 ctatcccctt gaaatttaat agatcaaccc tatatgagaa gttaattatt cgaacacaac
     2881 tattaacggg gagattgttt aatggttagc aagcagcaaa ctatgggatt tcaaacagag
     2941 gtaaagcaaa tgcttcattt ggttgtgcat tcgctttata gcaacaaaga gatttttctt
     3001 agagaattaa tttctaatgc ttctgatgcc ttggacaagt tacgattttt agctttatca
     3061 aacgggtcat tgtttgaaaa tgattctgat ttgaaaatta gcattcagat taatgaaaag
     3121 cttcaaacca ttaccatcag cgataatggg attggtctga gttgggaaga ggcagtagaa
     3181 aatttgggga caattgcaaa atccggaaca aaagaattta ttagccaatt aactggtgaa
     3241 caagcaaagg attctcaact aataggacaa tttggagtgg gtttttattc cgcgtttatc
     3301 gttgctgata aagtaacagt taaaagtcgc cgcgctgggt tacaacctga ggatggaatt
     3361 gtatgggagt ctaagggtga tggtgaattt actataggat atgaaaaaaa atcgacccgc
     3421 ggtacagaaa ttaccttgca cttaaaacct gaaaacgacg agtttttaag tgattggcgt
     3481 attcgcggta ttattagtaa atactctgat catatttgtt ggcctattgt gatgaaaaag
     3541 ctttcagagg aaggcaaaga atcaaaagaa tttgaaacag taaacaaggc gacggcactt
     3601 tggacactac agaaatctga aattagcgaa gaagactata agcaactgta taaacatatt
     3661 tctcatgatt acatggatcc attaacctgg tctcataacc atgttgaagg aaaacacgag
     3721 tatattactt tgctttacat accagcccat gccccatttg atttatggca gcatgaagcc
     3781 aaacatggac taaagcttta tgtaaagcgt gtatttatta tggatgaagc gacacaattt
     3841 ttaccccgat atttacgatt tgtaaaaggg attgtggatg ccagtgattt accgcttaat
     3901 atttctcgag aaatattaca ggataacaag caggtagaat ctattcgagc tgcatgcacc
     3961 aaacgtgttt tgtctatgct tgaaaaaatg gctaccaatg ataaagaaac ctatcagaag
     4021 ttttggaatg aatttggact tgtgctaaaa gaaggaccta ttgaggattt cgctaataag
     4081 gaagcgattg ccaagttgct tcgtttttct actacagcaa gcggtagtga gaaacaagaa
     4141 gtatcgctgg aggaatatgt tagtcgcatg aaagaagggc aggataaaat ttattatatt
     4201 accgcatcga gttacaatgc tgctaaaaat agccctcatt tggaaatatt caggaaaaag
     4261 ggaattgagg tattattgct cagtgataaa gtcgatgaat ggcttgtagg ttatatgaat
     4321 gagtttgcag gcaaaaaact acagtcaatt tcaaaaggca aggttgaatt gggagatgat
     4381 gaaacttccg aacaaattaa agaacaggaa aaaaccctgg agccattgat taagcatatt
     4441 aaatcagttc taaatgagcg agttaaagat gtattgctga ctaatcgtct tactgattcc
     4501 cctgcatgtg ttgttgctga tgagcaagac atgggattgg aaatgcaaag aattttacaa
     4561 gctgcgggtc aacaggttcc agtgagcaag cctatttttg aaattaatcc ggatcatgcc
     4621 ctgattaagc ggttgcatga tattcaggat gataaccaat ttgaattatg ggttactatg
     4681 ctgtttgaac aagctgtgtt ggcagaagga gggcaattgg ataatcccgc tgattttgtg
     4741 aatcgggtta acagacttct ggtttcctcc tagaattcta tagggttggc aatcaatccc
     4801 ggattacaac aagtcattat ccgggatgag ctgaacataa aataaaaagg ctcaaaaatg
     4861 agccttttta tttttaaatt tcccttactc ttcagttaag cgaaaatatt tggtaccgaa
     4921 atatctttgt aatttctttc tgatcgtacc gcgactaata cccaacatct tggctgcttg
     4981 taattgattt ccacgacgtt tttccattac agcttgtaat agaggtggct caacttctga
     5041 caggatcata tcatagagat cattaattga tttggattta ttttcagcaa gaaagcgggt
     5101 aaccaaactg taaactaaat cctgtaaacc ttgttcttgt ttagtggatt gagttgtagc
     5161 ttgtgtatca atgacattca tcttaacttc cttattattt aattaaatca tacagtccaa
     5221 ttgcttacac atgtaaatga aagcaaaatt aattgtacat gaaggctaaa tgataatcta
     5281 gattttcata tcaaaactat gcattttttt caggcaattc tgccactaca agatcaaaga
     5341 gagaacagtc agcctggctg gaagacagag attcctttaa ctttgccagt tgattaatca
     5401 tcgacttggc ttggttggga tcattatgaa aattggaaat atatctagat aattcaattg
     5461 cattgcaatc gtattgcaaa aattcaggta ccatcatttt attggctaac agattacata
     5521 agcccaaaaa tttaacttta ataaaataca tggcagcaac ataagtaaga aaggacgatt
     5581 tgtaaataat gcacattggt ttttccaata aggcacattc taatgaggca gttccagaag
     5641 ctactatgac aaagtcagca gcagacatgc attctattgc ctgtccctgg ataaaagtaa
     5701 cagtaagatt ctggttgctg aaataagctt ttactttatc aggattgata gttccagcga
     5761 tagggactac aaatcgaagt ttggggttgt ctagggtcag caattttgct gtattcacca
     5821 atatcggtat atggcgttca atttcagaat ggcgactccc aggcagtaag gcaataattg
     5881 gctcatttaa aggtaatccc aaggaagttc tgcccgagtg tttatccttg gcagcagcta
     5941 tcttttttac taaaggatgt cctacaaaac tgacaggaac acctgcattt tcatagatag
     6001 tcttttcaaa tgggaagatg acagccattt tatcgatgca atctttaata agatggatac
     6061 gtttgccttt ccatgcccat atttgagggc tgatgtaata aatgattttg attcccagtt
     6121 ttttctttgc atacttggcc aatctcaaat tgaaagcagg gtaatctacc aaaatcagca
     6181 aatcaggttt ttgtgtactc agatgctgtt tgatatcctg aaaggcttta cggaatattt
     6241 tcaggaaagg aattatttca gtcaaaccgg ttacggcata acgcgttaaa tctgaaatta
     6301 aatgaacccc agcggctctt aagtgtttac cgccaatgcc actaatttcc aggtctggat
     6361 aaactgcttt taattgcttt accagctcgg cagcatggtg gtcaccagat tcttcgcctg
     6421 ccactatgac aacacgacta gcattcggca tagcgttcta caaggttatt attaattaaa
     6481 gcggtgattt gttcagctgt tttcaaagca tcccttcctt cttcacctgt aacaagcggc
     6541 acgctatcat tttctatgca atttaagaaa gctctgattt cctccagtaa cgcatctcct
     6601 ttttcaaact ccctttgatc tctggtgata tcaggtattc cagggaacat ttctcccgtg
     6661 ccttttttaa atacggcaag ctgtttgttt tggtaatcaa ttgaaatata agaattctcc
     6721 tgaaagattc ttgtttttcg ttccgttttg aaactgattc tgctggctgt tacatttgct
     6781 acgcagtggt tagcaaagct tatgcgtgca ttagctatat caattgcttt tgttaatacc
     6841 ggtgctcctt gagccgttat ggatttaata gggctctgaa ctatattttg aataatatct
     6901 atgtcgtgaa tcatcaaatc aagtatcacg tttacatcag ttccacgggg gttaaaaggt
     6961 gcgagtctct gcgattctat aaataatggt aattccagat attcatccag ggcaaggcga
     7021 gcagaattga agcgttctaa atggcctact tgtaacttca cctgatgttg ttttgcaagt
     7081 cgaatcagtt cctcagcctg ggacactgtt tcagtaatcg gtttttcaat cagaacatgt
     7141 atcccatgtt gtatacagaa ttttgcaatt tcaaaatgct tgttggtagt cgctgcgata
     7201 ctgacagcgt ctactttgcc aaacaggtca tggtaattga tgtatgccgg aacatttaac
     7261 tcactggata ccacttcgca gactgtagag tttacatcac aaactgcaac taactctgca
     7321 ttaggaatta gttgatattt ttgggcatga aacctgccaa gataacccac accaataact
     7381 gcacaacgaa ttttattcat ctcatcatca attgataatt atttgtactt atgatcgcat
     7441 ttccttagtg ataaatcaat tgtatttcct atgttatcat gccagttaaa tagtaattga
     7501 ggcatttaaa actccaatca aactcctgag attggttcaa atcaaagaag tcgattcttg
     7561 tcttgcactt gcattcaata gctattatct tacgcctaat ttttcgcagg gagcagttaa
     7621 atgaatactg tgctaaaaat attgatggct ggggtcgatg aagtggggag aggaccactt
     7681 gcgggtgccg ttgtaaccgc agccgttatt ttaaaaaaac caatagatgg gcttaccgac
     7741 tcaaaaaaat taagcccaaa gcaaagaaat ttattagcaa ttagaataaa ggaagaagcg
     7801 ttagcttttg cctatgggcg agcagaagtt gaggaaatag atcaattaaa tattcatcat
     7861 gctactctat tagctatgcg aagggcagtt gaagctttac ccattcagcc agataatgtc
     7921 tttgtcgatg gagcttttac tcctcaattg aacataccat gcaaggctat tgtccaagga
     7981 gatagcttga tacctgaaat tagtgcggca tccatcctcg ccaaggtatt gcgtgatgaa
     8041 gaaatggtag ctcttgataa aatatatcca ggatatggtt ttgcagaaca taaaggttat
     8101 gcaacccctg ttcataaaga agcgctaatg cgtttgggtc cttgtaaaat acatagaaga
     8161 agttactccc ctgttgcgga tttgatttca aagtaaaact ctgagtggta ttaatttgga
     8221 aaataccgtt caaataaaaa tacataagaa atagctttta aaatgtcata atatgattta
     8281 tgcaaatcag agcataaaaa aataaatcaa ttcaagctat taaataatat tcggtgcgag
     8341 cttatcgaca ttaaaattcc aaagcttgcc aggaaagtta ccatagctgt tccaccataa
     8401 ctgacgagtg gaagaggtat acctacaacc ggaataatcc ccatgaccat accaatattg
     8461 acaaatgcag aaaggaaaaa ggtcatggcc agactggctg aaagcaggcg cgtgtaagtg
     8521 gtttgtgcat tattggcaat atttaaactg cgtagcgaaa ttaagactat cagcgcgaca
     8581 atagcaaatc cgccggcaaa gccaaattct tcgccactta ccgcaaaaat aaaatcagta
     8641 gcatgttctg gcaagaaatt gaggtgtgat tgactaccct ttaaccatcc tttgcccatt
     8701 aggccgcctg agccaatggc aattttggat tgaataatgt gatagccagc accaagtgga
     8761 tcttgttcag gatcaatcag ggtatacact ctttgtttct ggtagtcatg catcagattc
     8821 cacacaacag gaattgctga gcacatcagt aatgcaatta ataatatgat tttaaaacgt
     8881 attcctgcca aaaatacgac acataaacct gcaacagtaa ccataattgc agtacctaga
     8941 tcaggttgtt ttgcaataag aagagccgga ataaaaataa tcagggaagc aataccaatt
     9001 gagcgtatgc tgcttggatg agattgtcgg tcgaaaaacc aggcggccat cataggtaca
     9061 gccagtttca taatctcgga aggttgaaaa cgaaataacc ccagttctaa ccagcgctga
     9121 gcccctttac caattttacc cattagcatg actgcgatta acaagcttaa cccaaccccg
     9181 taaatccatg gggtccagat tttatattta tgtggcggaa taaatccaag tacaaacatg
     9241 attagaaaag cgaagagcag cctcatggat tggcgcatga tcatgcccat attggcattt
     9301 gaagcgctat aaagtatcaa gagtccgaag gcaataagag taagtattaa tccaagtaat
     9361 ggaaaatcaa gatgaaggga ctttgctgta aaacgatata cgggcttagt cgtttgtcta
     9421 ctcatggtgt tttcttaata ggataaagtt gataataagt gtcaagtacc ttacgtgcta
     9481 cagtggaagc gatagtatca ttttcaacta ccaccgcaat ggcaatttcc ggtttttcta
     9541 ctggagtaaa tgcaataaat aaagaattat ccctcaaatg ctcaggtatg tcttcgtact
     9601 ttgccttttc atattgtctt ccgctgtata cttgtgctgt acctgttttt cctgctaccg
     9661 ggtaaggagg atttctgcca aaacggtaac ctgttccttc attgctggtt agtacgctat
     9721 gcatcgcatc aatcacaaca tcccagtttg cttcatctct cagggaaact gggtattctt
     9781 caaaaggctt gtattcttcc atttcattgg tatcgctgtt tactgttttt atcagtaggt
     9841 gaggtctgaa tcgttgtcca tgctggctta gggaagctgt ggcattagcc atttgcaaag
     9901 gggttgccag cataaatcct tgtcctattg cagaaatgag agtatctcca ggataccagg
     9961 atactccttt agtttgtctt ttccagcgag cgctaggtat tactccattt gcttcttcat
    10021 gaaggtcaac gtgtgttagt tgtcccaagc caaattttac aagcatgtcc tcaatgttag
    10081 agattcccat tttattacct agttggtaaa aaaaagtgtc acaagagacg gtaatggctc
    10141 gtttgaaatt aatgaccccg tggcctgttt ttttccaatc acggtaaaca tggctggaag
    10201 tagggagttt gtacttaccg gggtcatata tttcagtggt cgtggtaatg aagcctttat
    10261 ccaaaccagc cagtccaaca aacggtttga ttgttgatgc aggggggtaa acgcctcgaa
    10321 ctgctcgatt aaaaagaggg cgctggaggg cattggataa cactttataa tccgctttac
    10381 tgactccact gacgaaaata ttgggatcaa aacttggaga actcaccatc gcaagtactt
    10441 cgccattccg agagtttatg actactaccg cacctcgttt atccttcaat gcattataag
    10501 ctgcttcctg aagtctggcg tctatgctta aatacagttt cgctcctgaa tgaggattga
    10561 ctttatttat tattcttaaa gtgcggccac taacatcagt ttctaccatt tgataaccca
    10621 ctttaccatg gagaatatct tcatagtatt tttcaatacc ggccttgcca ataaagttgg
    10681 tagcacgata attagtggag tccacttgtt ttagttcctg aatattaata cgaccaacat
    10741 accccaaggc gtgggcagta atctctccaa gagggtaatg acgcatcaat ctcgctttaa
    10801 tgcttactcc cgggaaatga tactgattgc tggcaaaggt agctacttct tcctggctta
    10861 attttaattt gataggaatg ggaacaaaag aacgattttg taatctggtc ttattgaagc
    10921 tatcaatatc ttcgtctgta attgaaggaa ttaactctcg aagtttagtc aaagtctgtt
    10981 tcatgtcttt aacacgttcg ggagtgattt ccagcacata cactggtatg ttttcagcga
    11041 gtaatactcc atttctatcc aaaataaccc ctcttggagg agcaataggt attacgctca
    11101 tttgattttt taaagacaag gtctgatacc gtttaaattc ggatatttgc aggaaggcca
    11161 atcttaaaat cagtattaaa gataaaataa tcagaatcgc aattaacaga ttaagtctaa
    11221 atcgttgatg ttgggattca gcacgatagt ttttaaatga ttgattccga tacatcgcag
    11281 aaaatgttgt atgacaaaac aaaagtagga atagtacctg aaattacaga tttttaccaa
    11341 ttataaaata tttataaagc ttgtggtttt tcattttttg agattagagt caaatttttc
    11401 tatgtaatat agaaagagtg ttgcaaaaga ctatgcacac cctatttatg ataaggatgg
    11461 ttgttaatga tagaccatgc tctatagagg gactccagca aaataatgcg aaccagagga
    11521 tgaggaaggg ttaatttgga taatgaccag cgttcatcgc aaagagtcag tatttcattg
    11581 gataatcctt ctgggccgcc aattataaaa caaaggtgac ttgaaatttg ttgtaattgc
    11641 gtcaacctaa gtgctaattc ctcgctgcta aaggattttc ccagcatgtc caaggcaata
    11701 aggcgagcat tggcaggaag ggcatcttta gtcaaagcac tttctttttc tagtattctt
    11761 gctaaatccg aggatttatt acgacgcagc aaagggattt cgatgagttt tatctggatg
    11821 ccatcatgaa acctctttgc gtattcgtta actcctgagt taacccagtc gggcatttta
    11881 ttgccaagag tgataatggt aatttttagc atagataatg tcaggagtta ccagggtgtt
    11941 cttcccataa tccttcaagg ttataaaaat gtcggaattc tggttgcatg acatgcaata
    12001 tgatgtctcc aaaatcaatt aaagcccaat caccatgttc tattccagta gaactcaagc
    12061 aaggcagacc agcaaccttc atatcttcca gaactttttg agctatcgat ttgacatgtc
    12121 tggatgaacg gcctgatgtg acgaccataa aatcagtgat tgttgtttgt ttatgcacat
    12181 caatgatctt aatatctatc gcttgaatgt cttcaagaga ttttaacagt ttttcgagcg
    12241 taggattttt ttcaagcata actaagatat attccgtcaa aagggttgaa taatatcaac
    12301 aattgatttg tataaaaagg gttttagttt tcaagtctgg aaaactaaaa cgtaaaaatc
    12361 taattattgt ttttcgcata tctgaatatg agtcaataaa aatttaatta cagcaaacaa
    12421 taccaggcag cctaacgtag caatgaataa tatactgagt tgttgggtga atgctgtagc
    12481 gtagagcgtt tttaaaacga ttatatttgt ctctccagta ggaatggcag tcagatcggc
    12541 taattttcct gaaaggaatc ctcctattcc taatgaaacg aaaaagatac ccatcatggt
    12601 gcttaccttg tttttgtcag caagtacagt tattgctgac aaccctactg gtgaaagcag
    12661 taattcagcc aaagaaatca tcaggtaggc agggatgata agaagaggtg aaatcaaaat
    12721 ggatttatca actacagtac ttacaaaggc aataattgag taggcgagtg tcatgaatac
    12781 catagcaagt acaaattttt tcccggtact taagcctctt tcaatcattg taagactacg
    12841 gtgctttttg gcaagaaaat aaccaattat taacatacca atactttgca ctgtgatgta
    12901 gtatggtggg ggaaaatcga tacctaaaaa gcttggctcg actactcgcg caataaataa
    12961 tgttaaggac atgaacatct gaaaataaaa tgcccagaaa ataacagaga tgatgcacaa
    13021 taacccgata actaatgttt gcctggactg atttgcactt tcacgattta ctgaatataa
    13081 aatgtaactg gctgaaaaaa gaaccacaag tccaaacatg atattcgcca gctgaggtga
    13141 acttaaaata taaaatgaca atgaccacag caaaaccaat aacacaaaag ctgaaatgat
    13201 tttacctggt tgtaaaacaa aaggattata atccttaatt ttgtactgat gtattccaaa
    13261 taaaaacact acaaatgcga tgattagtcc gattgatgca ctggtgaagg aagcagacca
    13321 gccaaaatac tcattaaact tgcttggtag tgttgttccg aggattattc ctgtcgtgat
    13381 gcccatgtaa aaaatagtaa aaccactttc tctttttgtt gatcctactg gatattcatt
    13441 acctagtaat gaagaaatat taggttttaa taaacctgtt cctacagcta ctcctgcaag
    13501 tgaagaggtt aatgccagcg aattatcaat caatgacaac atgcaataac ttaaaaacag
    13561 aacaatagca cccagcaata tagcgcgttt ttggcctatt aatttatcag caatccagcc
    13621 tcctactaat ggtgagaggt aggtgagtgc tgtgaacgat cctactaaag aatagatttc
    13681 tttgtccggc catttaaagt gtaaggccaa ataaagtgct aataaggatt gaactgcgta
    13741 aaaaccataa cgttcccaca tttcggttgt aaagtagatg cggagagatt ttgggtgttt
    13801 ttccatatta tttaagtaac tacgattaaa ttaatttatt aaataaaaat tatatcatat
    13861 aaaaaacagt atgaatattg attggtcatt ttatctggtt tttctcaact cattagatta
    13921 tctcattccc ggaggtagtt gactggtgta tgatgctaaa aaatttttta atcgctattt
    13981 gatgggaaat aataactgaa gttttcatag caataaggag tattcttgat gaacaaggac
    14041 aagaataaac gtgttatttc tgcccctaga ggtaccgaaa ttcaagctaa aaattggtta
    14101 actgaggcgg cattaaggat gatttgcaat aatttggatc ccaatgttgc agaggatccc
    14161 gattctttga ttgtttatgg tggattgggc aaggcagcca gaaactggga atgttttgat
    14221 gaaattgttc atgtattgaa attattaaat aatgatcaga ctttactcat tcagtccgga
    14281 aaacctgtcg gtgtatttac tacccatgaa gaggctccca gaatactaat tgccaattct
    14341 aatttggtac cgcgctgggc tacttgggag cattttaacg aactggataa gaaaggcctg
    14401 atgatgtatg gccagatgac cgccggcagc tggatttata ttggttctca aggcattgtg
    14461 caaggaactt atgagacatt tgttgcggca gctaaaaaac attatcaggg tgatttgtcc
    14521 gggcgttgga ttttaacagc gggtttaggg ggaatggggg gagctcaacc cttggctgga
    14581 actatggctg gtgccagcgt tcttgctgta gaatgtgaca gacaaaggat tgagaaacgt
    14641 ttacagacaa agtatctgga tcggtacact gataatttaa gtgaagcatt agactggatt
    14701 aatgaatcct gtcgccgtaa aaagccagtt tcagtagctg ttttgggaaa tgctgctgaa
    14761 atatttcctc aactggttaa gttgggagtg cagccttctc tggttaccga tcaaaccagc
    14821 gctcatgatc cgctcaatgg ctatttgcca ttaggatgga cattagaaca agctgttgaa
    14881 atgagaaaaa aatcaccaga agaggttgtt gatgcagcca agaaatcgat ggctgttcaa
    14941 gtgcatgcaa tgcttgaatt tcataataga ggcattcctg tatttgatta tggcaataac
    15001 atcagacaaa tggcatttga agcgggagaa aaaaacgctt tttcctttga gggatttgta
    15061 cctgcttata tcaggccatt attttgcgaa ggaattggac catttcgatg ggttgcattg
    15121 tcaggtgatc cagaagatat ttatgcaacg gatgagcgag taaagcagtt aattcctgac
    15181 gctcctcatt tgcatcattg gttagatatg gccagggaaa aaatttcatt tcagggatta
    15241 ccagcaagga tatgttgggt agggttaaag gatagagcac gccttgccct ggctttcaat
    15301 gaaatggtta aaaataaaca agttaaagcg cctattgtga ttggccgtga ccatttggat
    15361 tctggttctg tggctagccc caatcgtgaa acagaaggta tgctggatgg cagtgatgct
    15421 gtttctgatt ggcctttgct taatgcgctg ttaaattgtg ccagtggggc tacttgggta
    15481 agtattcacc acggaggagg ggttggtatg ggcttttcgc aacatgctgg cgttgtgatt
    15541 gttgctgatg ggacagaaaa ggcagctaaa cgattagccc gtgtgttaca caatgatcct
    15601 gcgacagggg taatgaggca tgctgatgca ggttatcaaa ttgccaagca atgtgccaaa
    15661 gagaactcgc tttggctacc catggaatct taaaaggagc aggtttatgt cagaacagtt
    15721 tatattgcag cctggtcagt tatcgctact ttctattaaa caaattttag atgaggaact
    15781 atcttgcgtt cttgctgaga attcctttga attaattaga gcctctcacc aaacggttaa
    15841 aaaagtaatt gatgaaaaga aaactgtata cggaatcaat acaggttttg gttctctggc
    15901 aaaccagacc atttcttcag attgtttgaa agagttgcag cgtaatattg tgctttctca
    15961 tgcttgtgga acgggtaaat tattgccgga tgacgtggtt gccttgattt tgcttttgaa
    16021 aattaataat ttgtctcaag ggtattccgg agttaggctg gaattaatta atgccttgat
    16081 tgctttgttt aatcataaag tatatccatg cattccctct aaaggttcgg taggtgcgtc
    16141 cggagattta gtcccgcttg cacatttgtc tttacctttg ttaggagaag gcgaagtaag
    16201 acatcaaggt caggtgatca gtgctgagga aggactaaaa ctggccggat tgaaaccgct
    16261 tgaattggaa gctaaagaag gattagcact gcttaatggc ttacaggtat ctaccgcttt
    16321 agctttgtca gctctgttta ttagtgagac attgtttgaa actgcgatta tttccggcag
    16381 tttatcagta gatgctgcca gtgggagtga tgtccccttt gatgacagaa tacaccaaat
    16441 tcgaggacat caagctcaaa tttctgctgc cagtatgtac agaaatttat tggcaggtag
    16501 tcaaattcga gagtcacaca ggcattgtaa tcgtgttcag gacccttatt ctttaagatg
    16561 tcagccacaa atcatgggtg caattcttca tcagatgcag tttgttggac aaactctcca
    16621 agtagaggcc aatgcaattt ccgataatcc tctcgttttt gcagagcagg gggatatttt
    16681 gtctggggga aattttcatg gtgaaatcat cgcaatggct gctgacaatt tggcattggc
    16741 attatccgag ataggaggta gtgcagaacg ccgaattgct ttattaattg ataaaaattt
    16801 tagtggatta cccgcgttcc tggttagaga aagcggctta aattcaggtt ttatgattgc
    16861 acatgtaact gccgcttctt gtgccagcga taacaaagcg cttgctcatc cacactccgt
    16921 tgatagtttg cctacctcgg caaatcagga agatcatgtt tctatggcaa ctagtgcagc
    16981 acgtcgactg catgaaatga tcgataatac ttcaacaatt cttgctattg agttattggc
    17041 agcttgtcaa gggctggagt ttcataaacc tctaaagaca tcaccgcaat tggataaaat
    17101 ttatcaaagc gtaagaagcg tggttaaaga gtatgataaa gatcgctatt ttgcacctga
    17161 tatagaaaaa attaaaaaga agattttgga taaagaattc tcattgctca cactcacgaa
    17221 cgaatagcag gaaaaataca atggaattga tggcagaata tctaactttg catcaacaac
    17281 acaaaaacaa tccttatcct tctttgtctg aaagaaaaaa attgctgatt gcaataaaaa
    17341 aaatcttgca gacagaagct tacactttgg cagaagcaat aaataaggac tttactcatc
    17401 gctctgttga ggaaacctta tttttagaag tttttccaac gataaaagcc attaattttt
    17461 gtttaaaaaa tatgaagaaa tggatgagaa agagacgcag aaatgtgtct tggttgttta
    17521 ttcctgcaaa agcctatgtt ataccgcaac cccttggggt ggttggtatc atggttccct
    17581 ggaattatcc tgtttatctg gctttagtcc ctgctattta tgccttggca gctggaaaca
    17641 gggtgatgat aaaaatgtct gagttatctc cgcatattgg cgatacttta ctaaaattga
    17701 tgcacgcggc tggattaaac cattctatca gagtcattaa cggtgatatt gagctatcaa
    17761 agcagtttgc ttcgcttcct tttggccatc ttatgttcac tggctcaact aatgtaggaa
    17821 aaatggtgat gaaggctgcc agtgataacc tgattccagt gacactggag ctaggcggca
    17881 aatctccggc aatattatct cccaccatga acccagctta ttttaagcgc ttgtttatgg
    17941 gcaaattatt caatgctgct caaacttgta tcgcacctga ttatttattg attcctaaag
    18001 gatgggaaga cagagtcgaa agagaattta ggaagtttat taatgccttt tacccggatt
    18061 tgatgagtaa tgagcagtat tccagtatta tttcagagag acataaaaag cgattactcg
    18121 atctggtcga agatgcgcga agcaaagggg ctcgtgtagt tgagtttggt cattcaattc
    18181 cgaattgctc aaagttacct gtatttctat tatttgatat aacaaatgat atgcttgtta
    18241 tgaaggaaga aatttttggt cctatactgc ctgtattgac ttataactca ataaatgatg
    18301 cagtcgatta cattaactca tctcccaacc cacttgcctt gtattatttt ggagaagaca
    18361 agagtgaaat aaaaatcata caaacaaaaa cattatctgg tgctttgact atcaatgaaa
    18421 ccttaatgca tattgcaatt gatgatttac catttggtgg tgttggtcat agtggcatgg
    18481 ggcattatca tggaaaggaa ggatttgata ccttttcaaa attaaaaccg gtgttagtgc
    18541 aacgatttat atctacagtt agctggctat atccacccta tggtgcttta atgcgtatgt
    18601 ttttagcttg ggttggtggt atcaagttga aggagaaatc atgagtaaag tcatttttat
    18661 tacaggtggc agtagaggaa tcggtagaga aatcgcttta aaatttgctg caaaggacaa
    18721 agcaaatatc gttattgcag ccaaaacagc agaacctcat cctaaactgg aaggaactat
    18781 ttattctgtt gcaaacgaaa ttgaagaact gggaggaaag gctctgcctt taatggttga
    18841 tgtcagagat gagcaacaga tccaaaatgc gatcactaaa accatagaaa cttttggaag
    18901 attggatgta ttagtcaata acgcgagcgc aatcaatttg actgatacat taaatactcc
    18961 aatgaggcgt tatgatctca tgcagagcgt taatgtcagg gcaacgtttg catgttctca
    19021 agcagccatt ccatatcttt taaaaagcga gaatccgcat attctgactt tgtccccacc
    19081 tttaaatatg gataaaacct ggtttgcacc acatctggct tataccatca gtaaatacgg
    19141 tatgagcatg tgcacattag gcctcgctga ggaatttaaa gaggcgggaa ttgctgttaa
    19201 ttctttatgg ccgaaaacta ctatagctac tgatgccata agagttcatt ttcccagtga
    19261 gctgtatatg gcaagcagaa agccactcat tatggctgat gctgcttatt ggattatcaa
    19321 tcaaccatca aaatcaatca ctggaaattt ttttattgat gaagacgtat taaaaaatag
    19381 tggtgtcact gatttttctt gctatgctat gaatcctaaa gctcaacttt gtcctgattt
    19441 atttttatga aggtagaaat ctatactgat ggtgcatgta agggaaatcc aggacctggc
    19501 ggctggggcg tattactccg atataatggt agagaaaaaa ctcttcatgg aggagaggcg
    19561 caaactacca ataatcgcat ggaattaatg gcagcaatta agggcctgga agcattaaaa
    19621 cgtccttgcg aggtggattt gtataccgac tcccaatatt tgcagcaagg aatgaaggaa
    19681 tggatcaaaa catggaaaag aaatggttgg cgtaactcca agaaagagtt ggttaaaaat
    19741 gctgaattat ggaaatcatt agataatctg gcttctattc ataatattca ttggcattgg
    19801 gttaaagggc actccggcca tttggaaaat gatttggttg atgctttggc aaatttgggt
    19861 attgaggaat tatcatagag ttatgagaca agttatatta gataccgaaa cgactggtat
    19921 tggacctgaa cagggacata gagtaattga aataggttgt attgagctta tcgatagaaa
    19981 attaaccggc aagcacttcc acatatacct taatccacag cgtgaggtgg atgaaggggc
    20041 atttagagtt cacggtataa gtactgagtt tttgcaagat aaacctttat tccaggatat
    20101 tgtgactgaa tttatacaat ttgtggaagg ttcagaatta attattcaca atgctccatt
    20161 tgatgttgga tttcttaatt ctgaattaaa acatgtgaaa tggaataaga cattagaaga
    20221 ttattgccgg attcttgata ctttgatttt agccagagaa aaacatcctg gacagcgtaa
    20281 tagtttggat gctttgtgta agcgttatga aatagatcat tttaatcgtg aactgcacgg
    20341 tgctttgctt gatgccgaaa tattagctta tgtgtatttg gcaatgacag gtggccaaag
    20401 cagtttattt actgaggttg aatccagttt gagtcaatca aaaataaaaa ctcaagagat
    20461 aaagtcatta agtttaaaaa agccagtaat aatgaaggct aatgaagagg aattaatgca
    20521 acatcaaagc ttcgttgaat ttatatctaa aaaatccggt atcaatcatt gggaagaggt
    20581 atagctctca tgattatata aattataaat aattattctg ttacacttat tattcggttt
    20641 cgcgtctgcc aatactaaac cttatacaat aacaaaattc ttcaggcatc ttattcctgg
    20701 tcgctatcct caaaataagc aaccaaagtg tttggttata ggcagaggcg aagcctaatg
    20761 attatctcaa tcaagcaatt tttttattat ctatttggga attagatgtt tttcagcaaa
    20821 atcttttccg atacattctc ctaatgatct cccccatgtg ccagctgttt cactattgat
    20881 tttatctggc atgctggcat acagttcatc ttggcatttt ttagtgcttt caggaattaa
    20941 agtcacgcat tgttcataag tcattttaat ttcatcaaat cgttttttga gatccggatc
    21001 ttgaataaat cctttgcaga taagatctgg taataaggga gtcatagagt ttaaccaggc
    21061 atccttagtc atctcattag gatttgctgt gtcttcagca ttggatatta agggaaataa
    21121 tgaagtgctt agcacgagcg tggtagcaat aagtaatttc cttgacatga tttatt
//
LOCUS       DACVWI010000036        21078 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.036, whole genome shotgun sequence.
ACCESSION   DACVWI010000036 DACVWI010000000
VERSION     DACVWI010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 21078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21078
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.036"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            116..1705
                     /locus_tag="JBH85_05130"
     CDS             116..1705
                     /locus_tag="JBH85_05130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945580.1"
                     /translation="MYTKNSLISGALNKFPGRELDEEEMLLDILWSQPNNWTALKDYL
                     NSFERIKKFAIVLFSHEKSILPELLNHIELILASSPPGAYLELIDRVFPLGTKLNDNF
                     TQWFNFSPNFFRNHVLIDGTSYHFLFERYHAFFISNPNFFESLLEKIGMPHIEQTCTD
                     FRLILCCSYDQKKIYHLFSEEFIRQWAIRVFSDVTKIFSQDTDGGHLFRKNKYPLSDL
                     DDQVAKLICGLLSDEFISLVLAQIPLRDALLQNWMEAFVKAVGPDRFMNAISKKGCNP
                     IHELISAALDMPSYETRHYSVFYSLCISISKEKFDCYIDSNEETNLDRIFKLINSLEP
                     EAYFQYKSSSLDDDISQVLINLLGKERALARHIHNMFLHGLTSKDPGKILLLESRLPD
                     ITLAEDDVDSLLCKHTIKVVQPAYKRMLLDRDSVHNIAAILRKIPESRRCEILALFEQ
                     RYDFYAYFRNHFKDYLTIKSLLPNDDHQQDGLEQKYGFSMRNELALLATSFFSGGRTQ
                     HSDAVRQSPGDEYKNNACVIS"
     gene            complement(1901..2770)
                     /locus_tag="JBH85_05135"
     CDS             complement(1901..2770)
                     /locus_tag="JBH85_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HAU0945581.1"
                     /translation="MTVKRSSLGRNLSALLSQSSSSLLSNEQPQTEKQLKLAVTCLQP
                     GKYQPRGGMEETPLNELAQSIKKQGVLQPLLVREIDNGRYEIIAGERRWRASQLAGLT
                     EVPVILKQVDDETAMAMALVENLQREDLNAMDQARAMYRLTNEFALTHQQVADLLCKS
                     RTAVSNFLRLLSLSTPVKKLLENGDIDMGHARALLTLDEEQQSQVAQLIIAKNLSVRE
                     TEQLVERVKTGKPESKAHQKDNPQFKEQLNSLAKHLQTKIKLKQGKTGKGTLIIHYEN
                     DHNLQKIIEQLLN"
     gene            complement(2784..3554)
                     /locus_tag="JBH85_05140"
     CDS             complement(2784..3554)
                     /locus_tag="JBH85_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HAU0945582.1"
                     /translation="MAKVIAIANQKGGVGKTTTAINLSASLAASKQQVLLIDLDPQGN
                     ATMGSGVDKRQLVHTTNDVLLRDCLAEQACLATTCGYDLIPGNEDLTVAEVSLMERNH
                     RETFLFKALQPIQSNYDFILIDCPPALNTLTINAFVAADSVLIPMQCEYYALEGLAAL
                     LSTIEQVKSTVNSRLHIEGVLRTMYDARNRLCAEVSRQLLEHFPAKVYRTVVPRNVRL
                     AEAPSHGMPALQYDKSSPGAAAYMVLAAEVISKQTVAS"
     gene            complement(3557..4183)
                     /gene="rsmG"
                     /locus_tag="JBH85_05145"
     CDS             complement(3557..4183)
                     /gene="rsmG"
                     /locus_tag="JBH85_05145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HAU0945583.1"
                     /translation="MIDNTKIRSLLEEGLPVFQLDSIGDLLLDFLLLLNKWNKTYNLT
                     AIRDIETMVSKHLFDSLAILPWIKGNHIIDVGTGPGLPGIPLAIAKPDLQFVLLDSNG
                     KKISFLNEVKRQLNIKNIEPIQIRVENYHPNQGFDTVISRAFSSLEQMIKWTQHLVAQ
                     DGLWLAMKGRFPDTELVPIHQTYRVERYAVPGIEGERCCVLINNTNKE"
     gene            complement(4180..6054)
                     /gene="mnmG"
                     /locus_tag="JBH85_05150"
     CDS             complement(4180..6054)
                     /gene="mnmG"
                     /locus_tag="JBH85_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HAU0945584.1"
                     /translation="MNLEQLYDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQ
                     MSCNPAIGGIGKGHLVKEIDALDGAMAKAADQAGIQFRILNASKGPAVRATRAQADRV
                     LYRKAIRTQLQSQANLTIFQQAVDDLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLG
                     GKIHVGMNQYAGGRAGDPPSIALSKSLRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQ
                     PGDTPVPVFSYLGTASDHPQQVPCHITHTTEATHDIIRNNLDKSPMYAGVIEGVGPRY
                     CPSIEDKIVRFADKTSHQIFVEPEGLTTEEIYPNGISTSLPFEVQVQFVRTIKGFENA
                     HITRPGYAIEYDYFDPRGLTSFLQTKAIPNLFFAGQINGTTGYEEAAAQGIIAGMNAA
                     LQIKDQELWCPRRDEAYIGVLIDDLITCGTQEPYRMFTSRAEYRLLLREDNADLRLTE
                     KGRQLGLVGDERWDSFSKKREAIESTQALLHNSWVRVHHNDLFKEALLNPMQHDCRAA
                     EFLKRPEINYQHLLMMDDLNLPELPQEITEQIEIQNKYAGYIDRQQQEIEKLRKHENT
                     MLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGRISGVTPAALSLLLVHLKKSRLPV
                     "
     gene            complement(6185..8098)
                     /locus_tag="JBH85_05155"
     CDS             complement(6185..8098)
                     /locus_tag="JBH85_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2888 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945585.1"
                     /translation="MATSSLILQSYLKTLKTDEKSELRYEDKVEELLEYNSRAKGGDF
                     LAPLSFYLAILENTDEVMLRYMSEENKQKLIRDLQVAYLLLLTQKKYEEEHQKYENIK
                     TYTQQIKRCEELLDYLNYNQVCKEQKRAPSPEHGYASDGYPVKYLSIFLGKELAEMIV
                     DSMDRKTKTIKESMGWFNEKRLYWVWASSLLKVILAALPDDFFNVGQATEVVKAPDPY
                     TGTLSWALYYFRFSLNMFLLLKHTISGPWMSEREKKTPWTERFLTQWDQRKFTLLNDS
                     IWATGNLICFFWLTGKGALGTWGDVLTLALLVFDISMAIWDYEEQKTRHNKEMLAYEE
                     DIKKLKQLISKAEEEPGKEDEKLRIIKEYELQLQGLMRAQKESERNWDLQKVSLYAGI
                     AYAVGLMLAFALLAAPFFPVSGPALLAITITGAVLCLAFTVIYNGVKGGMEVYKAHCS
                     AKEAKEGYNNKLELFKLLLEKNPSLDDNEKKFLFLEIKKLKAETEYQKQMVVFQTMHL
                     LRSLILESFIPAVVFASFVFLPLGIGFAVLGATIGVALATNLMINAAFKPAKNEVKAF
                     NEKEYEAFCKDPDNWDKSSKSKQGFFQPKEKKPLLDTIAAKTQEKENDRIELLDDESS
                     VPLLLSSKNTPNI"
     gene            complement(8325..9818)
                     /locus_tag="JBH85_05160"
     CDS             complement(8325..9818)
                     /locus_tag="JBH85_05160"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HAU0945586.1"
                     /translation="MLLKIPAKMQANYATIWNVMTTPLYPIILAGGSGTRLWPLSRQN
                     FPKQFLKLNGELSLIQQTMKRAMGLPGNQTIIVSNDAHYFICQDQLQDFNAQTTYLLE
                     PCARNTAPAIACAAHYLANTIGKDAVMLVLPSDHWIADDEIWLAAMLEGGQFASENNA
                     IVTFGIKPDSPKTGYGYIEAGTTLSSDIKQVLSFREKPDAHTAAQFVSKGNYFWNSGM
                     FICRAGVYLEELEQFETNIYQFSQQALTLAQHHHDFLRLDLDCFSQCKEESIDYAIME
                     KTDKAVVIPISIQWSDLGCWTAVADANKQDEQGNTLIGNVIAQDSHNCLINSEELLVT
                     TVGIQDQIIVATSDAVLVADKRYSQQVKDLVHSLRKDHPHLTQDHQRVPRPWGYYEVL
                     AEGTSFKVKRLMVKPGAKLSLQTHQHRAEHWVIVGGEAEVVNGNNTFRLSKNQSTYIP
                     KNALHRLSNPHNEPLYVIEVQSGSYLGEDDIKRFDDIYLRKEVELAE"
     gene            9836..10537
                     /gene="queC"
                     /locus_tag="JBH85_05165"
     CDS             9836..10537
                     /gene="queC"
                     /locus_tag="JBH85_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HAU0945587.1"
                     /translation="MRFCIMKKAVVLLSGGLDSTTCLALAKSQGFACYALSFSYGQRH
                     SAELCAATRIAKHMGASDHKIVTLDIALFGGSALTDASIEVPEFKESPEIPVTYVPAR
                     NTIFLAMALGYAESIGARDIFIGASSVDYSHYPDCRPEFIESFQSLANLATKAGIEGD
                     RFTINAPLQYLSKVQTIQLGTELGVDYGLTVSCYQANEAGEACGQCDSCTFRKRGFKS
                     AGVDDPTRYQKCVHI"
     gene            10580..11134
                     /locus_tag="JBH85_05170"
     CDS             10580..11134
                     /locus_tag="JBH85_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2885 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945588.1"
                     /translation="MEFFMWDKIKEWYKNNKSYLTMLLIGSAVVGLSVTFLALFFPPV
                     LAAFASISIFGMAPLAFLTSLHLPLAVLTLGCIVTGAAFGAILGGLVAWKQSISIAKH
                     VYSYFGHKQEHQVEINEEDTYRYLMGHLEGEASESFEVEVDEEFNDYTSTDSAEDRPN
                     PLNFSTDSNPQALDGGYEMTEFRI"
     gene            11444..12181
                     /locus_tag="JBH85_05175"
     CDS             11444..12181
                     /locus_tag="JBH85_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2884 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945589.1"
                     /translation="MTLKQFATGVFYLPAAVFSGLTNLFLGSYAKDKRGNYIQDEDGN
                     YVRNRGLIGLTLDAVKYLGTSVANFISNHQKAISVAFWSSLVVAGAAALTVAFWPAAL
                     AAVVNFSVFGVSIASVVGAGYAAQVAATAGVAAALTSTGVYLGATVVNAFNALRECIS
                     NLRSKKPSSNPEFTPVNDETFEEVRRNQFSGLSKGSEQQQTVQLSSSSSEEEEPVHTT
                     KVFVQPKDVTPEVVENPTSTVSLTGSK"
     gene            complement(12237..12806)
                     /locus_tag="JBH85_05180"
     CDS             complement(12237..12806)
                     /locus_tag="JBH85_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HAU0945590.1"
                     /translation="MANNPRLIIGISGSSGIIYGIRLLQVLQKLPIETHLVISKAGQL
                     TRAYETNISAAELKALADVYHPCTDLTASIASGSFKTLGMIIAPCSMKTLGEIAHGIS
                     SNLLTRAADVVLKERRKLVLLPRETPLHLVHLNNMVCITQMGGIICPPVPAFYNHPQN
                     IDDLINDTVGRVLDLFDLDCGLVKRWGET"
     gene            13085..15097
                     /gene="metG"
                     /locus_tag="JBH85_05185"
     CDS             13085..15097
                     /gene="metG"
                     /locus_tag="JBH85_05185"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096876.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HAU0945591.1"
                     /translation="MTSERKMLVTSALPYANGHLHLGHLVEHIQTDIWVRTHKMLGIQ
                     CISVCGDDAHGTPIMLKAEQLGITPEALTAEIKLSHEKDFKAFAIDYDYYHTTHSPEN
                     QALATTIFERLQAGGDIVKKTIRQFYDPVKQMFLPDRYVKGTCPKCAAVDQYGDNCEV
                     CGATYSPTDLINPVSVISGASPVEKESEHYFFDLPRYEELLKDWTRKGHLQTEVTNKL
                     SEWFEAGLKQWDISRDAPYFGFPIPGVPDKYFYVWLDAPIGYMASFKKYCDERGVSFD
                     EFWDKASKTELYHFVGKDIVYFHALFWPAMLAASGFRTPTAVYTHGFLTVEGQKMSKS
                     RGTFIEARAYLAHLHPEYLRYYFAAKLNGRVDDLDLNFDDFVNRVNADLVGKVVNIAS
                     RCAGFINKRFDNRLSSELNDPKLHNDLLSARESVIDAFVSRDYARAIRQIMDCADKVN
                     QYIDANKPWVLAKDESKLNEVHAICTMGINLFRILITYLKPVLPMMAKASEEFLNSEP
                     LHWGSIDKPLLNHRINTFKPLMVRVEKEKIEAMLAQSKESLMTTPTKENTPVEDSNLI
                     SIEDFAKVDLRIAKIVNAEPVEGADKLMRLILDLGDAQKQVFAGIKKAYDAEELIGRL
                     TVMVANLEPRTMRFGVSEGMVLAAGDGQGIYLLQPDAGALPGMKVK"
     gene            15097..15711
                     /locus_tag="JBH85_05190"
     CDS             15097..15711
                     /locus_tag="JBH85_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit B"
                     /protein_id="HAU0945592.1"
                     /translation="MASVKEIDALLPQTQCGECGYAGCLPYAEALTQGAALINKCPPG
                     GVETVNALGKLLHVDASPYLKEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAIIGS
                     SKLMHAIITHECTGCGLCVDPCPVDCIEMVSLSAAGYDKDLARQRYNAKQMRQLRDEH
                     EKQQIYRERKKLSAHAQDHTQDVQAKQNYILEALARVKAKKTYE"
     gene            15704..16339
                     /gene="nth"
                     /locus_tag="JBH85_05195"
     CDS             15704..16339
                     /gene="nth"
                     /locus_tag="JBH85_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HAU0945593.1"
                     /translation="MNKQKSQEIFKRFQEQNPHPTTELQYSTPFELLIAVMLSAQATD
                     VSVNKATAKLFPAANTPQALLDLGLDRLKDYIKSIGLYNSKAQNIMKTCEILIDQHEG
                     QVPGQREALEALPGVGRKTANVVLNTAFGQPTIAVDTHIFRVANRIGIAKGNTPLAVE
                     QELLKKVPREFLHDAHHWLILHGRYVCTARKPHCKTCIIEDLCEYKDKNLL"
     gene            16580..18331
                     /locus_tag="JBH85_05200"
     CDS             16580..18331
                     /locus_tag="JBH85_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2879 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945594.1"
                     /translation="MLQESIMKWFSSVVNGVKTIGSSLWEGSKWVWNNASLSKITTGV
                     FSYTANTTFQVLEQAIALRDAVPTLVNNPQAKKIAYGMGYILVNDVLPLVALNFANNT
                     AQNYFGEGYDEDASWYAPYSLFLSGLALTNYLVKAYTWRQGVQTVAHVAVLDSLGPSS
                     FNSNKKSLPPSICDELDCNYKRKIKGWGREPLVLMGNDALTYGVSLIPYVGEPLSQVL
                     RVYFNGRYIIRLTTPELCERHKYLAMKPESVLGFGLTFEATSMLMDKALESTVGMPPF
                     LYYRALRHLLLLMHINVAAHMELPKSDLKDKASSFDPFNVYERVNRFVADVIFSGLIK
                     RIPIDFKPDKDAEPLIPLSPALKFGTMVLNMDLEKEKKTAPGFFSKAIDKAYVLVLPP
                     VFRGANGLINDPIVFMYWPTIRSGAISAVEFVEGVGKTKTMATLAWAPKTVAAAINLK
                     FGIPKKVTRFVLMLSKEEDFWNLATAFKLWFERHNIKGEPKLITGSNLALNGVTPLQP
                     TPVSVEKEPIVSPHLLITEKDTKEVVPAKSLIPVRSQPQTGVVVTISPDSLFSTRRRR
                     VNPDQEKVAITELSMTK"
     gene            complement(18444..19508)
                     /gene="corA"
                     /locus_tag="JBH85_05205"
     CDS             complement(18444..19508)
                     /gene="corA"
                     /locus_tag="JBH85_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HAU0945595.1"
                     /translation="MNTHKTKASAKAGLLPGTAVYIGEHPPQPTQITIHIYDKKNYKR
                     LDSFDTRQVKEAYEAGHNIWIDISGLADIEKITKICSEYNIHPLVIEDLLNTRQRPKL
                     DIVDDYIFVVFKLLQSPPNHLSYNTEQFCLIIKQKLLLTFRESGKYNLSSIYQRLNGE
                     HSLTREYGSDYLTYLIMDYIVDDYFNFVETSAQLLETLEDQLIKKPETIKLQTLYTIK
                     RRTITLRKIIPPLRDIVHLLLTDDGGLINKKYNLYFRDLYDHCIRLVESIDLHREMSA
                     SMLDIYLSTINNRMNESMKILTLFASIFIPLSFIAGVYGMNFKFMPELDWRYGYPMIL
                     VTMVLLAILMLYFFKRKKLF"
     gene            19778..21067
                     /locus_tag="JBH85_05210"
     CDS             19778..21067
                     /locus_tag="JBH85_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VUT family protein"
                     /protein_id="HAU0945596.1"
                     /translation="MNQSLSPQQSPGFLFIAVSMITCLILLINVSFKIILLGGLVFAI
                     NSLICPLIAALFLFALRNCTFKEQRHLLNICLMTLYMFCIGVYVLVNLPAAEYMHDNP
                     AYQVIFEEIPKKFFATTIAFALSFYLPHLLFCTKNDRVLSTPKQCVLLALLGGVSFFC
                     LDFYLLFSAPHAHSFKQIFIDSFMISSLLLLIIGVVYLTFLLNDKQHKGKALIETTEL
                     TLFPIYQYLICFAVTVMLVCLACEYRIIAINKDLVLSASCIFFPITIIISSIVGELWG
                     YQANLKLALALLAAQFIFDMLLMGSVALPSPPFFNLNPFYHYIMPRRLSAASLSLFVT
                     FLGNAMLLHYLKYSKWKINRSLRILIANISVNSLLCLVDYSLLYGGIYPYEQIINLAV
                     SVWQYKLLTALIALPVILWMCKILERNYSLVVQTERN"
BASE COUNT         5958 a         4051 c         4341 g         6728 t
ORIGIN      
        1 catcgtaatt aaaacaccaa aattgaatta aagataatgt tgctatatga tgcgagcgta
       61 aatggaagcc aacagccaat tcaattggtc ggcatctcgc caataaggaa atgcaatgta
      121 tacaaaaaat tctctaatca gtggtgcatt aaacaaattt cccggtagag agcttgatga
      181 agaggaaatg cttctcgata tcttgtggtc ccagccaaat aattggactg cgctgaaaga
      241 ctatctgaat tcttttgagc ggataaaaaa atttgctatc gttttatttt cacatgaaaa
      301 aagcatattg cctgagttat taaaccatat tgaacttatt ctggcatcat ccccccctgg
      361 agcatattta gaattaatag atagggtttt tcctttgggt actaagttaa atgataattt
      421 tacacaatgg tttaattttt cccccaactt ttttagaaac catgtattga ttgatggaac
      481 aagttatcat tttcttttcg aacgctacca cgcttttttt ataagcaacc cgaatttttt
      541 tgaatcattg ttagagaaaa tcggcatgcc acatattgag cagacatgta ccgattttcg
      601 attaattcta tgttgctcat atgatcaaaa aaaaatttac catctattta gtgaagagtt
      661 cattcgtcaa tgggctataa gggtattcag tgatgtaaca aaaatatttt ctcaagatac
      721 tgatggagga catctcttta gaaagaataa atatcctttg tccgatctgg acgaccaagt
      781 ggcaaaatta atttgtggat tgctgtccga tgagtttatc tcattagttt tggctcaaat
      841 accacttaga gatgctttat tgcaaaactg gatggaagct ttcgtaaaag ctgttggccc
      901 agacagattt atgaatgcta taagcaagaa aggatgtaac cctatacatg aacttatttc
      961 tgcggcactg gatatgcctt cgtatgagac taggcattat tccgtttttt actctttatg
     1021 tatcagtatt agtaaagaaa aatttgattg ctatattgac tcaaatgaag agactaactt
     1081 ggataggatt tttaaattaa tcaactcgct ggagccagaa gcctattttc agtataagag
     1141 cagctcttta gatgatgata tatcccaggt gctgatcaat ttacttggta aagaacgagc
     1201 cttggcaagg catatacata atatgttttt acacggatta acttcaaaag atcctggaaa
     1261 aatattatta cttgaaagta ggttgcctga tattacactt gctgaagacg acgttgatag
     1321 tctcctgtgt aagcatacga ttaaggttgt tcaaccagcg tataagcgca tgctattaga
     1381 tagggatagt gtacataata tagctgcgat acttagaaaa attccagagt cgcgcagatg
     1441 tgaaatattg gcattatttg aacagcgata tgacttttat gcatacttca gaaatcactt
     1501 caaagattat ttaacgatta agtcattatt acccaatgat gatcaccagc aagatggatt
     1561 ggaacaaaag tatggctttt caatgagaaa tgaattggca ttattggcga ctagtttttt
     1621 ttcagggggt aggacacaac atagtgatgc tgttcgtcaa tcgcctggtg atgagtataa
     1681 aaataatgct tgcgtgattt cttgataatt tctttattta ggttgacaag taaaaaagga
     1741 tggttcgcat gctgtcaatg tcattgaggt gttttatata agacaagttt cagatgaagc
     1801 ttcccttgat ccaatttata atagcgttta agaatgttca ttaatccggg caggaatttt
     1861 aggactgggg cctgtcatca tggttgtgga tacaattgat ttagtttaat aattgctcaa
     1921 taattttttg caaattatga tcgttttcat aatgaataat caaagttcct ttgccggttt
     1981 tcccttgttt taatttaatt ttagtctgta aatgtttcgc taaagagttt agctgctctt
     2041 taaactgagg attgtctttt tgatgggctt ttgattccgg tttccctgtt tttactcgtt
     2101 caactagctg ttccgtttct ctgaccgata aattcttggc aatgattaat tgagcaactt
     2161 gactttgctg ctcttcatcc aaagtgagta acgctcgagc gtgtcccatg tctatgtcgc
     2221 cattttccaa gagctttttt actggtgttg aaagggaaag caatcgaaga aaattgctta
     2281 ccgcagttct ggatttgcat aaaagatcag ctacctgctg atgggtaagc gcaaattcat
     2341 tggtaagtct atacatggct cttgcttgat ccatggcatt taaatcttca cgctgcaggt
     2401 tttcaaccag tgccatcgcc atggctgttt catcatctac ctgtttgagg ataacaggaa
     2461 cctcagtaag gcctgccagt tggctggcac gccagcgtct ttctcctgcg atgatttcat
     2521 atcgtccatt gtctatctca cgaaccagca agggttgcaa tacgccttgc tttttaatgg
     2581 actgggcaag ttcattgaga ggggtttctt ccattccacc acgaggttga tacttgcccg
     2641 gctgtaaaca agtcactgcg agtttgagtt gtttttctgt ctggggttgc tcatttgata
     2701 ataaagagct gcttgattga cttaataaag cagataaatt acggcctaaa ctactgcgtt
     2761 ttactgtcat tacttacccc aaattaactg gctacagttt gtttacttat cacttcggca
     2821 gcaagaacca tataggctgc tgcgcccggt gaggatttat catattgcaa agccggcatt
     2881 ccatgacttg gcgcttcagc cagtcttaca ttgcgtggta caacggttct atacactttt
     2941 gcagggaaat gttctaataa ttgcctggat acttcggcgc ataatctgtt gcgcgcatca
     3001 tacatggtac gaagcacgcc ctcgatgtgc aaacgcgaat tgactgttga tttcacttgt
     3061 tcaatggttg ataacaaagc agccaatcct tccaaagcat agtattcaca ctgcatgggt
     3121 atcaaaacgg agtcagcagc aacaaatgcg ttaatggtta atgtattcaa agcaggaggg
     3181 cagtcaatta aaataaaatc ataattagac tggatgggtt gcaacgcttt aaataagaaa
     3241 gtttcccgat gattgcgctc catcaggctg acttctgcaa cagttaaatc ctcgttaccg
     3301 ggtattaaat catatccgca agttgtagca aggcatgcct gctcagccag acaatcgcgt
     3361 aacaagacat cgttggttgt gtgaaccaac tgtcttttat ctaccccact acccattgtt
     3421 gcattaccct gaggatctaa atcgatcaac aaaacttgct gtttggatgc ggcaagagat
     3481 gcagataaat tgatggccgt ggttgtttta cctactccac ctttttggtt ggcaatggct
     3541 atgactttcg ccataattat tccttgttcg tgttgttaat aagcacgcag caacgctctc
     3601 cttcgatacc cgggacagca tatctctcaa ctcgatatgt ttgatgaatc gggaccaatt
     3661 cagtatccgg aaaccgccct ttcatggcta accacaaacc atcctgagcg acaagatgtt
     3721 gagtccattt tatcatttgt tcgagactgc taaatgctct gcttattact gtatcaaaac
     3781 cttggtttgg gtggtagttc tctactcgaa tttgtattgg ttcaatgttc tttatattga
     3841 gttgacgttt tacttcattg agaaagctaa tttttttccc attactgtcc aataatacaa
     3901 attgtaagtc aggtttggca atagccaaag ggatgccagg taaacccggg ccagtaccca
     3961 catcgataat atggtttccc tttatccatg gtaaaatagc cagactgtcg aacaggtgct
     4021 tgctgaccat ggtttcaata tcacgtattg cggtgaggtt atatgtttta ttccatttat
     4081 tgagcaggag taaaaaatcc agcaagaggt cgccgatgga atccagttga aacacaggca
     4141 gaccctcttc aagcaatgat cttattttcg tattatctat catactggaa gccgactctt
     4201 tttcagatga acaagtaaaa gagacagagc ggcaggcgtt acgccagaaa tccgtccggc
     4261 ttgagctaaa gaagttggtt taatccggtt taatttttgg atcacttcac tcgataaacc
     4321 aacgacgtca ttataatcca aagtttcagg gagcatggta ttttcatgct tgcgtaattt
     4381 ctcaatttct tgttgttgcc tgtctatgta cccagcatat ttattctgaa tttcaatttg
     4441 ttctgttatt tcttgtggca attcgggtaa attcaaatca tccatcatta aaagatgctg
     4501 gtagttaatt tctggccgct tcaaaaattc agcggcgcgg caatcgtgtt gcattgggtt
     4561 aagcaaggct tctttaaaca gatcattgtg atggactctc acccagctgt tgtgtaacaa
     4621 agcctgagtt gattcaatcg cttcacgttt tttggaaaag ctgtcccacc gttcatcacc
     4681 taccaggcca agctgccggc ctttttcagt cagtcttaaa tcggcattat cttcacgtaa
     4741 taacaaacga tactcagctc ttgaagtaaa catcctatag ggttcttgag ttccacaagt
     4801 aatcaaatca tcgataagta cgcctatgta tgcctcatct ctgcgaggac accacaactc
     4861 ttgatctttg atttgcaggg cagcattcat acccgctata attccctgcg ctgccgcttc
     4921 ctcatatccg gttgtcccat tgatttgccc ggcaaaaaac aaattaggaa ttgctttggt
     4981 ttgcaaaaat gaggttaatc cacgtggatc aaaataatca tactcgatgg cgtaacctgg
     5041 cctggtgatg tgggcatttt caaaaccttt aatggtgcgc acaaattgca cttgtacctc
     5101 gaaggggagg ctggtagaaa ttccattagg gtatatttct tccgttgtca ggccttccgg
     5161 ttccacaaaa atctggtgag atgttttatc agcaaagcga acaattttgt cttctatcga
     5221 ggggcaataa cgagggccaa ccccttcaat cactcccgca tacatgggcg atttatccaa
     5281 attatttctt attatgtcat gagtggcttc tgtagtatgg gtaatatggc atggcacttg
     5341 ttgaggatgg tcgcttgccg ttcccaaata ggaaaatact ggtaccgggg tatcacctgg
     5401 ttgttctacc atctggctaa aatcaatggt gcgtctgtca attcgaggag gagttcctgt
     5461 tttcaaacgt cctaccggta aatccaaatc tcgcaagctt ttagataacg caatggatgg
     5521 aggatctcct gctctgcctc ctgcgtattg gttcataccg acatgaatct tgccacccag
     5581 aaaagtccct actgttaata caacagcacg tgccttgagc gtgagcccca tttgggttac
     5641 aacaccagtg actaatccgc cctcaatttt caaatcatca acagcttgtt gaaagatggt
     5701 taaattagcc tgtgattgaa gttgtgttcg aatggctttt ctatacaaaa cacgatccgc
     5761 ttgtgcgcgt gtggctcgaa ccgcaggccc ttttgaggca ttaagaattc gaaattggat
     5821 ccccgcctga tcggcggctt tagccatcgc tccatcaagg gcatcaattt ctttaaccag
     5881 gtgaccttta ccaatgcccc ctatggccgg attgcaggac atttgtccaa gcaagtctat
     5941 gttatgggtc aataacaagg tttttacacc caggcgtgct gctgcaagag ctgcttctgt
     6001 accagcatgc cctccgccaa cgactatgac atcatataat tgttcgagat tcatgtttaa
     6061 ccattagtta tgccaaaatt ataaattgga tttttggatc atctgcaaaa atgatccaag
     6121 ctaacatata aaaaaatgag caattataca cttttttggc aattgtccca agatgtaata
     6181 aagattatat attgggcgtg tttttgctac ttaacaacag gggtacactg ctctcatcat
     6241 ccagcagttc gattctgtcg ttttcttttt cctgtgtttt tgcagcgatg gtatctaaaa
     6301 gaggtttttt ctctttaggc tgaaagaacc cttgttttga tttggaggac ttatcccaat
     6361 tatccgggtc tttacaaaaa gcctcgtatt ctttttcatt aaaggctttg acttcatttt
     6421 tcgcgggttt gaaagcagcg ttgatcatta agttggtcgc cagggccaca ccaattgtgg
     6481 cgcccaaaac agcaaatcca attcctaacg gtaaaaacac gaagctggca aaaacaacgg
     6541 ctggtataaa cgattccaaa atcagcgacc gcagcaaatg catggtttga aaaacaacca
     6601 tctgcttctg gtattcagtt tctgccttta attttttaat ttccaggaag agaaattttt
     6661 tttcattatc atccagtgat ggattttttt ccaataagag tttaaatagc tcaagcttgt
     6721 tattatatcc ttctttcgct tccttggcgg agcaatgtgc tttgtagact tccataccgc
     6781 ctttcacgcc attgtaaatc actgtaaaag ccaggcaaag aacagcgcct gttatggtga
     6841 ttgccagtaa agccggtccg gaaacgggga agaaaggcgc agccagtaat gcaaaagcga
     6901 gcatgagtcc gacagcataa gctatgcctg catataaact gactttttgc aggtcccaat
     6961 ttctttcaga ttctttttgt gctcgcatta aaccttgcaa ttgcaattcg tattctttga
     7021 ttattctgag cttttcatcc tcttttcctg gttcttcttc tgccttgcta attaactgct
     7081 ttaatttttt aatgtcttcc tcataagcca gcatttcttt gttgtggcgc gttttttgct
     7141 cttcgtaatc ccaaatggcc atgctgatgt caaagactag cagtgccaaa gtcaatacat
     7201 caccccaagt cccgagagcg cctttgccag taagccagaa aaagcaaatc aaatttcctg
     7261 ttgcccagat ggagtcattg agcaaggtga attttctttg atcccattgg gtgaggaatc
     7321 gttctgtcca tggtgtcttt ttttccctct cgctcatcca ggggccacta atcgtgtgct
     7381 tgagtaacaa aaacatgttg agggaaaagc ggaaataata taaagcccag ctcagggtac
     7441 ctgtataggg gtcaggggct ttgactactt ctgttgcctg accgacattg aaaaaatcat
     7501 caggtaatgc agcgagtatc actttgagca ggctggatgc ccaaacccaa tacaaacgct
     7561 tttcattaaa ccagcccatc gattctttga tggttttggt tttacgatcc atagagtcaa
     7621 cgatcatctc tgccagctct ttacccagaa aaatgctcaa gtacttgact ggatagccat
     7681 cactggcgta accatgctct ggagaggggg ctcttttttg ttctttgcaa acttgattat
     7741 aattgaggta gtctagcagt tcttcacatc gtttaatttg ctgcgtataa gtttttatat
     7801 tttcgtattt ctgatgttct tcctcgtatt ttttttgcgt gagtaaaagc aagtaggcaa
     7861 cttgcaagtc tcgtatcagt ttctgcttgt tttcttcgct catgtaacga agcatcactt
     7921 catcagtgtt ttctaaaata gccagataaa aactcagtgg agcaagaaaa tcgcctcctt
     7981 tggccctgct attgtattca agaagttctt ctactttgtc ttcatagcgt agttcagatt
     8041 tctcatcagt tttgagagtt ttcaggtaag attgaagaat taaactactg gttgccataa
     8101 agtcatctct ttttaatttt tgttaaatac ctatataaat gatactataa aaagcaaatt
     8161 tgttcttttt tataacacag catttatttt aggtacaaga tgaatgcgat tggctttaca
     8221 gtattgatac taaaatttgc aggaataagg atgaagtgta ttgcaactta ggcaagagtg
     8281 ctaagcacag tgagtggaat caagagggtt attttcgata gacatcattc tgccagttca
     8341 acttcctttc ttaaataaat atcatcaaag cgtttgatgt cgtcttcgcc cagataggag
     8401 ccactttgta cttcgataac ataaagtggt tcattatgtg ggttacttaa tcgatgcaat
     8461 gcgtttttcg gaatgtaggt ggattggttt tttgataatc ggaacgtatt gtttccatta
     8521 actacctcgg cctcaccgcc aacgataacc caatgctcag cccgatgctg atgcgtttgt
     8581 aaagagagtt ttgcaccagg cttcaccata agccgtttta ctttaaatga ggtgccctct
     8641 gccagcactt cataataccc ccatggtctg ggaacacgtt gatgatcttg agttaaatga
     8701 ggatgatctt tgcgtaagga gtgaaccaaa tctttcactt gttgcgaata gcgtttatcg
     8761 gcaactaaca cagcgtcact ggttgcaact attatttgat cctgaatgcc aacggttgtg
     8821 actaacaact cttcactatt aatgaggcaa ttgtgactat cctgggcgat gacatttcca
     8881 atgagagtat tgccttgttc atcttgtttg ttcgcgtcgg ccacagcggt ccagcagccc
     8941 agatcactcc attgtattga aatgggtatt acaacagcct tgtctgtttt ttccattatg
     9001 gcatagtcta tagactcttc tttacattga gaaaaacaat ccagatcaag acgcaaaaaa
     9061 tcatgatgat gctgggcaag ggtcaatgcc tgttgactga attggtagat gttggtttca
     9121 aattgttcca gctcttcaag ataaactcct gcacgacaaa tgaacatgcc gctattccag
     9181 aagtaattcc ctttactgac aaattgtgca gcagtgtgcg cgtctggttt ttctctaaag
     9241 ctcaaaactt gctttatatc actggataaa gtggtgccgg cctcaatgta gccataaccg
     9301 gttttggggc tatcaggctt tatcccaaat gtcactatcg cattgttttc tgaggcaaat
     9361 tgtcctccct ctaacatggc ggccagccag atttcatcat cggctatcca gtgatcagag
     9421 ggtaaaacca gcatgacagc atcctttcct attgtgtttg ccaaataatg ggctgcacat
     9481 gctatcgcgg gggctgtatt tcttgcacaa ggctcaagca agtaagtggt ttgtgcatta
     9541 aaatcttgca attgatcctg acagataaag taatgagcat cattacttac gataatggtt
     9601 tgattgccag gcaatcccat cgctcttttc atggtttgtt gaattaaaga caattcgcca
     9661 tttaatttta aaaattgttt aggaaaattt tgtcttgata aaggccatag ccgagtgcca
     9721 gagcccccgg ctagaattat tggataaaga ggagtcgtca tcacattcca tattgtggca
     9781 taattggcct gcattttagc aggaattttt aagagcaagc aattgttcca attttttgag
     9841 gttttgcatt atgaaaaaag ctgtcgtttt gctttctggt ggtttggatt caacgacttg
     9901 tctcgcgttg gctaaatctc aggggtttgc ttgttatgca ttaagctttt cttacggcca
     9961 gaggcattcc gcagaactgt gtgccgcaac tcgaatagcg aaacatatgg gtgcatctga
    10021 tcataaaata gtcaccctgg atatcgcttt atttggtggc tccgctttga ctgatgcatc
    10081 tattgaggta cccgaattca aggaaagccc ggaaatacca gtcacctatg taccagcccg
    10141 taatactatt tttttggcta tggctttggg ttatgctgaa tcaattggtg ccagagatat
    10201 ttttattggt gccagttctg ttgattattc tcattatcct gattgtcgcc cggagtttat
    10261 tgaatctttc caatctttgg caaacttggc aacgaaagca ggaattgaag gcgatcgctt
    10321 tactatcaat gctcctctgc aatatctgag caaagtgcag actattcaat taggtactga
    10381 acttggtgtt gattacggat taacggtttc ctgctatcaa gcgaatgaag caggtgaagc
    10441 ttgtggacag tgtgatagct gtacttttag aaagcggggt tttaagagtg ctggagtaga
    10501 tgatcccact cgatatcaaa aatgtgttca tatttaaccc acacagttaa attaatgata
    10561 taatccctga aattttggtt tggagttttt tatgtgggat aaaatcaaag aatggtataa
    10621 aaataacaag agttatttga caatgctttt gattggatcg gcggttgtag gtttgagtgt
    10681 tacattcctg gctctgttct ttcccccggt tctggcggca tttgccagca taagtatttt
    10741 tggaatggca ccattggctt ttttaacgtc attgcatctt cctctcgctg tgctaaccct
    10801 aggctgtatt gttactggag ctgcttttgg agcaatttta ggaggcctgg tggcatggaa
    10861 acaatcaatt agcattgcta aacatgttta ttcatacttt ggtcataagc aggaacatca
    10921 agtcgagatc aatgaagagg atacctaccg ttatttaatg ggtcatttgg agggagaggc
    10981 cagtgagtct tttgaagtcg aggtggatga agaatttaat gattatactt ctactgattc
    11041 tgctgaagac agaccaaacc cattgaattt ttcaacagat tcaaaccctc aggctcttga
    11101 tgggggctat gaaatgacag aatttagaat ctaaaattcg agcacaaatc aaatatatct
    11161 tcagggttta cgaaaagcgg tgatcgcttg aatttgatca tttggcttat tcaagcatct
    11221 tagtttatgg cattttttgc ttctatcttg ggttttcgaa aatcctgatc acctgatcat
    11281 acattgtaaa ttttatcgag ctctcggcaa aaaactggtt gagatgaaga caataaaatg
    11341 aacttacttt acacttttgt aacaacatat tgcgcacaat taattcacat ttaggaaatg
    11401 ggttgctaca atctgctccg atttataacc ttggagtaaa aaaatgacat taaaacaatt
    11461 tgcaactggc gtattttatt tgccagcagc cgttttttct ggtttaacta acctattttt
    11521 aggttcttac gcaaaagaca aacgcggtaa ctacattcaa gatgaagatg gtaactatgt
    11581 aagaaaccgt ggtttgattg gtttgactct cgacgctgtt aaatatttgg gaacaagtgt
    11641 tgccaatttc atttctaatc atcaaaaagc aatttcagtt gcgttttggt cttctttagt
    11701 tgttgctggt gctgctgctt taaccgttgc tttctggcct gctgctttgg ctgctgtagt
    11761 taacttctct gtttttggag tatcaatcgc ttcagtagtt ggtgctggtt atgcggctca
    11821 agttgctgct actgccggtg ttgctgctgc tttaaccagt actggtgttt atcttggcgc
    11881 tacagttgtt aatgctttta acgcattaag agaatgcatc tctaatttgc gtagcaaaaa
    11941 gccttccagc aacccagagt ttacacctgt taacgatgag acatttgaag aagtacgtag
    12001 aaaccaattc agtggcttaa gcaaaggttc tgagcaacaa caaactgtac aactttccag
    12061 ctcaagctct gaagaagaag agcctgtcca tactactaag gtatttgtac aacctaagga
    12121 tgttactcct gaagtggttg agaacccaac ttctactgta tctctcactg gctcaaagta
    12181 atataaaaat attacaagca agtggtcatt aaaaacgcgg ctttagccgc gtttttttat
    12241 gtttcgcccc agcgtttcac caacccacaa tccaaatcaa ataaatcgag tactctccca
    12301 acggtatcat tgattaagtc gtctatgttt tgcggatgat tataaaaagc gggcactgga
    12361 gggcagataa tgccgcccat ttgtgtaata cacaccatat tgttcagatg aacaagatgc
    12421 aaaggtgttt ccctcggcaa aagcaccaat tttctgcgtt ctttaagaac gacatcagcg
    12481 gctcgggtca acaggttgct actgatacca tgtgcaattt cacctaaggt tttcattgaa
    12541 cagggcgcaa tgatcatgcc taaagtttta aatgagccgc tggcaatgga tgcggtgagg
    12601 tcagtgcagg gatgatagac atctgctaaa gctttgagtt ctgcggcact aatatttgtt
    12661 tcataagcac gggtcaattg ccctgctttg ctaatgacca aatgcgtttc tatgggtagt
    12721 ttttgtaaga cttgtaatag tctaatccca tagattatgc ctgatgagcc actgatgcct
    12781 atgataagtc ttggattgtt ggccatgtgt attcactcgt tgaaaattta atttgatcag
    12841 gatttacgac cccccaatct ctttattaaa aacatttttt accttgacct tgtggtttct
    12901 cgtagtcctg ttgatattaa caaattataa gagaataagt agtacttaaa ttatcggatc
    12961 atctcggtaa aagttaacac ttcataaata actaccaata aaaacctgtt ttctattgca
    13021 gcatttccat tgtctttgcg ttataattag tcgctttatt ataggtgatg agtattctat
    13081 aactatgact agtgaacgaa aaatgttagt gaccagtgcc ctgccttatg ctaatgggca
    13141 tttgcatctg ggacatttgg ttgaacatat tcaaacggat atttgggtcc gtactcacaa
    13201 aatgttgggt attcaatgta ttagcgtttg tggggatgac gctcatggaa cacccattat
    13261 gctgaaagca gagcagctgg gaattactcc ggaagcttta accgccgaaa ttaagttaag
    13321 tcatgaaaag gattttaaag ccttcgccat tgattatgat tattaccaca ctactcattc
    13381 acctgaaaat caggcattgg cgactaccat atttgaacgt ttgcaggcag gcggtgatat
    13441 agtcaagaaa acaattcgcc agttttatga tcccgtaaag caaatgtttt tgccggacag
    13501 gtatgtgaag ggaacttgcc ccaaatgtgc tgctgtcgat cagtatggcg ataattgcga
    13561 ggtttgtggc gccacttatt cgccgacgga tttgattaac cctgtttctg ttatatcggg
    13621 agccagccct gtagaaaagg aatcagagca ttattttttt gatttgccgc gttacgaaga
    13681 gttacttaag gattggacaa gaaaggggca tttacaaacc gaagtaacga ataaactcag
    13741 cgaatggttt gaggcgggtt taaagcaatg ggatatttct cgcgatgctc cctattttgg
    13801 tttccctatt cccggtgttc cggataaata cttttacgtt tggttagatg ctcccatcgg
    13861 ctatatggca agctttaaaa agtattgcga tgagcgtggc gtttcttttg atgagttttg
    13921 ggataaggct tcaaaaacag aattatatca ttttgtaggc aaagatattg tgtattttca
    13981 tgctttgttc tggcctgcta tgttagctgc cagcggtttc agaacaccta ctgctgtgta
    14041 tacccatggg tttttaacgg ttgaggggca gaaaatgtcc aaatcgcgcg gtacttttat
    14101 agaagcacgc gcttatctgg ctcacttgca tcctgaatat ctgcgttatt atttcgctgc
    14161 caaattgaat ggtcgagtag acgatttgga tttgaatttt gacgattttg tcaatagggt
    14221 gaatgcggat ctggttggga aggtagtgaa tattgcaagc cgatgcgcgg gatttattaa
    14281 taagcgtttt gataatcggt tgagctcaga gttgaatgat ccaaaattac acaacgattt
    14341 gctgagcgca agagagtccg tgattgacgc atttgtttca agagactatg cgcgagcaat
    14401 aagacaaatc atggattgtg ctgacaaagt caatcaatac atcgatgcca ataaaccttg
    14461 ggtattggct aaagatgaaa gtaaactaaa tgaagttcat gccatatgta caatgggaat
    14521 caatttattc cgcattttaa taacctattt aaaaccagtc ttgccaatga tggccaaagc
    14581 ttcagaagaa tttttaaatt ctgagccttt acactggggt tctatcgata agcctttgct
    14641 aaaccaccgt atcaatactt ttaagccttt gatggtcaga gtagaaaaag aaaaaattga
    14701 agcgatgttg gctcaaagca aggaatcttt gatgactacc ccaacaaaag aaaatacgcc
    14761 agttgaggac tctaacttaa tcagtattga ggattttgcc aaagttgatt tacggattgc
    14821 aaaaattgtc aatgcagaac ctgtggaagg cgcagataaa ctaatgcgct tgattttaga
    14881 cttgggtgat gctcaaaagc aggtttttgc cggcataaaa aaggcttatg atgctgaaga
    14941 gttgattggg cgtttgactg taatggttgc taatttggag ccccgcacta tgcgtttcgg
    15001 tgtttctgaa ggcatggtat tggcggcagg ggatggacag ggaatttatt tattacagcc
    15061 tgatgctgga gcacttcctg gcatgaaggt gaagtaatgg cctctgttaa agaaattgat
    15121 gccctattgc cgcaaaccca gtgtggggaa tgcggatatg caggttgttt gccttatgct
    15181 gaagcgctta cccaaggagc tgcccttatc aataaatgcc ctcctggtgg tgttgaaact
    15241 gtaaatgctt tgggaaaatt actgcatgtt gatgcatctc catatttgaa agaagcaata
    15301 gataatactc ggcctccttc agttgctgct atcaaagagg atgaatgcat tggttgtact
    15361 aaatgcatta aggcctgtcc tgttgatgca attattggta gtagtaaatt aatgcatgcc
    15421 attattactc atgagtgcac tggatgcggc ttgtgtgtgg atccttgtcc tgttgactgc
    15481 attgagatgg ttagtttgtc tgcggctgga tatgataagg atttggcccg ccagcgttat
    15541 aatgccaaac aaatgcgcca gttgcgggat gagcatgaaa aacaacaaat atacagagaa
    15601 agaaagaaac tttcagccca tgcgcaagat catactcaag acgtacaggc aaaacaaaat
    15661 tatattcttg aggctttggc tcgggtgaaa gcaaaaaaga catatgaata aacaaaaatc
    15721 acaagaaatt ttcaaacgtt ttcaagaaca aaaccctcat cctacaacgg agttgcaata
    15781 tagtaccccc tttgagttat taattgccgt catgctttca gcccaggcaa cagacgttag
    15841 tgtgaacaaa gcgacagcca aactattccc ggcagccaat accccacaag ccttgctgga
    15901 tttgggatta gatagattaa aagattacat taagtccata ggtctttata atagcaaagc
    15961 acaaaatatc atgaaaacct gtgaaatact tattgatcag catgagggac aagttcctgg
    16021 ccagagagag gcgctggaag cattgcctgg tgttggccga aaaactgcaa atgtggtttt
    16081 gaatacagca tttggtcagc caaccatagc ggtcgacacc catattttca gagtggctaa
    16141 ccggattggc atagcgaagg gtaatacacc gctagcagtt gagcaggagt tattaaaaaa
    16201 agtgccccgt gagtttttac atgacgctca tcactggtta atattacatg gccgttatgt
    16261 ctgtacagca cgtaaaccac attgcaagac ttgcatcatt gaagatcttt gcgaatacaa
    16321 agacaagaat ttactttaag acaaagccat aatgaaggaa aatcaaacga taatgaacaa
    16381 tctatgcctc ataaaaatga ctggctgttg tatttcaaat tcattctatc aaatcatccg
    16441 ggttgagatt agcttttgta cagttaaaac acaaaagttc aattgaccat cagctcttat
    16501 aaaaaatttc aataaagttc aagaaaagtg ctctttccct ctggtatttc ccaattttta
    16561 ctcataaaat gaaattccgc tgttgcagga gagcattatg aagtggtttt catcggtggt
    16621 aaatggagtc aaaacaattg ggtcaagcct gtgggaaggt tcaaaatggg tttggaacaa
    16681 cgcctcattg tcaaaaatca cgactggtgt atttagctat accgcaaata caacttttca
    16741 agtgttagag caggcaatag ccttacgtga tgctgtccct accttggtca acaatcctca
    16801 ggcgaagaaa attgcctatg gaatgggtta cattcttgtc aacgatgttt taccgttagt
    16861 tgctttaaat tttgcaaaca atacggcaca aaattatttc ggagagggtt atgatgagga
    16921 tgcttcatgg tatgcgcctt attctctttt tttatcggga ttagctctaa cgaattatct
    16981 ggtcaaagca tacacctggc ggcaaggagt tcaaactgta gcacatgtag cggttcttga
    17041 ctcattaggc ccttcctcat ttaattcaaa taagaaatca cttcctcctt caatctgcga
    17101 tgaattggat tgtaactata agcgtaaaat taaaggttgg ggaagagaac ctcttgtttt
    17161 aatgggtaat gatgcactga cttatggggt tagtttaatt ccttatgtag gtgagcctct
    17221 ctcgcaagta ttaagagtgt atttcaatgg ccgctatatt attcgtttaa ctacaccgga
    17281 gctgtgtgag cgccataaat atttggccat gaaacccgag tctgttttag gatttggttt
    17341 aacctttgaa gcgacaagta tgttaatgga caaggctctg gaatccactg tgggcatgcc
    17401 tccattttta tattacaggg ctctgcgcca tttattgctg ctgatgcata ttaatgttgc
    17461 tgcacatatg gagttgccta aatctgattt gaaagacaaa gcctcgtctt ttgatccgtt
    17521 taatgtttat gaacgcgtca atcgctttgt agcggatgtc atattttcag gtttaattaa
    17581 aaggataccc attgatttca aaccggataa agatgctgag ccgttaattc cattatctcc
    17641 cgctctaaaa tttggcacta tggtgttgaa tatggatttg gagaaggaaa agaaaacagc
    17701 tcccggattt tttagcaaag ccatagataa agcgtatgtt ttggttttac cacctgtttt
    17761 tcgcggtgct aatggcttaa tcaacgatcc aattgtgttt atgtactggc ctactattcg
    17821 ctcaggagct atttctgctg ttgaatttgt agaaggagtg gggaaaacca aaacgatggc
    17881 tactttggca tgggcaccaa aaactgtagc agccgccatc aatctcaaat ttggaatccc
    17941 taaaaaagta acacgctttg ttttaatgtt aagcaaagaa gaagacttct ggaatctggc
    18001 tacagcattc aagttgtggt ttgagagaca caatatcaaa ggtgaaccaa aattaattac
    18061 aggttccaat ctggctttga atggggtgac ccctcttcag cctactcccg tatctgttga
    18121 aaaggaaccc atagtttctc cccatctact aattacggaa aaagatacta aggaagtagt
    18181 gccagcaaaa agcttgattc ctgttcgatc ccaacctcag actggagttg tagtgacgat
    18241 tagccctgat agtttatttt caactaggag acgtcgggtt aatccagatc aagaaaaagt
    18301 tgcgataaca gaactgagca tgactaaata aattttagag gcttttctga caagagggca
    18361 acagaagtgt gttgcccggt aaagacccta cccagttcta tcgatgatat tatgcaggtt
    18421 gtaaatgggg ggcttgacgc cacttaaaat aatttttttc gtttaaaaaa atacagcatg
    18481 agtattgcca gaagtaccat ggtaaccaga atcatagggt aaccgtatcg ccaatccagc
    18541 tcaggcataa atttaaaatt cattccataa accccggcaa taaaacttaa aggaataaaa
    18601 atactggcaa acaaggtcag aattttcatg gattcattca tgcgattatt tatagtagac
    18661 aggtatatgt ctaacatact tgccgacatt tctctatgca aatcgatcga ttctaccagg
    18721 cgaatgcaat gatcatataa gtcccggaag taaagattat actttttatt gattaacccc
    18781 ccatcgtctg taagcaacaa atggacaata tctctcaaag gaggaatgat ttttctgagg
    18841 gtaatggttc ttcttttgat ggtgtataaa gtttgtaact taatcgtttc tggtttttta
    18901 attaattgat cttccaaggt ttcaagcagt tgggctgaag tttcgacaaa gttgaaataa
    18961 tcatcaacaa tgtagtccat gatcagatag gtcaaataat cgcttccata ttccctggtt
    19021 aacgagtgct ctccattaag acgttggtaa atggaggata aattatattt tccagactct
    19081 ctgaatgtga gtaaaagttt ttgcttgatg attagacaga actgttctgt attataagat
    19141 aaatgattgg gaggggattg taataattta aaaacaacaa aaatataatc gtctacaata
    19201 tccagtttgg gtctttgtct ggtattaagc aaatcctcga taactaaggg gtgtatgttg
    19261 tattctgagc aaattttagt aattttctcg atgtctgcaa gacctgaaat atctatccaa
    19321 atattatgtc cagcctcata ggcctctttc acttgtcggg tatcgaagga atctaaacgc
    19381 ttataattct ttttgtcata aatatgtatc gttatttgag ttggttgcgg tgggtgttcg
    19441 cctatatata cggcagttcc cggtaatagt cccgcttttg ctgaagcctt tgttttatga
    19501 gtattcatga agttatctca gcttatttat tttcttatta acttatcatt tagtcatcgt
    19561 ttaagtcgac agttgacgac tcttgtttat cttgctatgc aaagggctat aatgctatat
    19621 ttgcgacctg attagcttaa taaagggcaa ttattatttg aagcttatag ggatgtagtt
    19681 aatacttcca tgtaaatcat aaagaattaa ctccctatag tcagtctcta tcaataaggc
    19741 agaatgagtt gttatatact atggaagctc ttgtcgtatg aatcaatcgt tatcacccca
    19801 acaatccccc gggtttctat tcatcgcagt gagtatgata acttgcctga tattattaat
    19861 taacgtttct tttaaaatta ttctactcgg agggctggta tttgcaataa acagtttgat
    19921 ttgccccctt attgcagcgt tatttttatt cgcattgaga aattgtacct tcaaagagca
    19981 acgccattta cttaatattt gtttgatgac tttatatatg ttttgtattg gggtttatgt
    20041 gctcgtcaat ttacctgctg ctgaatacat gcatgataat ccagcctatc aagttatttt
    20101 tgaagaaata cctaagaaat tttttgctac aactattgct tttgcactca gtttctattt
    20161 gcctcattta ttgttttgca ctaaaaatga cagggtttta tcaactccaa agcaatgcgt
    20221 gttattagct ttgctggggg gagtaagttt tttttgcctg gatttttatc tattattttc
    20281 tgctccacat gctcacagtt tcaagcaaat tttcatcgat tcattcatga tctcctctct
    20341 tttgctccta attattggcg tagtttattt aacattttta ttgaacgaca aacaacataa
    20401 gggcaaagca ttaattgaaa ccacagaact aacgcttttt ccaatttatc aatatttgat
    20461 ttgcttcgct gtgaccgtga tgttggtgtg tttggcctgt gagtatcgaa tcatcgcgat
    20521 caataaagat ttggttttat cggccagctg tattttcttt ccaattacta tcattatcag
    20581 ttctatagtt ggcgaattgt ggggttacca ggccaacttg aaattagcat tggctcttct
    20641 tgcggcacaa tttatttttg atatgttatt gatggggagt gttgcactac cttctcctcc
    20701 tttttttaat ttgaatcctt tttatcatta catcatgcca cgcaggttat cagctgcatc
    20761 gttgtcattg tttgtcactt ttcttggtaa tgcaatgcta ttgcactatt taaagtattc
    20821 aaaatggaaa attaaccgat ccttgcgaat attaatcgct aatatatcag tcaactcgtt
    20881 attatgcctg gttgactaca gtttgcttta tggtggtatt tatccttacg aacaaattat
    20941 taatttagcg gtgagtgttt ggcaatacaa actattgaca gcgttaattg ctctcccggt
    21001 cattttatgg atgtgcaaga ttttagaaag aaattattca ttagttgtgc aaacagagag
    21061 gaattaaata aacaaatt
//
LOCUS       DACVWI010000037        20646 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.037, whole genome shotgun sequence.
ACCESSION   DACVWI010000037 DACVWI010000000
VERSION     DACVWI010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 20646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20646
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.037"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..2395
                     /gene="legC1"
                     /locus_tag="JBH85_05215"
     CDS             <1..2395
                     /gene="legC1"
                     /locus_tag="JBH85_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegC1"
                     /protein_id="HAU0945597.1"
                     /translation="IGGNATRVDKIIEYQSNGISYKRGNQLTLKLKDRVLEHKTNVVE
                     TLVRHLKDENFKCLKVDSNQLKAKYPCLIVTFKYDEYRSKPENIPEGYSEFVTHMMIA
                     QINLKLKEKNLSPLIDRRQSFGFLTPTLTDVHTGVRLSLGLTPNKQWIECVEEGIKQT
                     DKSLAKFTLKDKDDLLNLFRAGEFCGDGHKYLYDLYKTGEKTQEEVNKFLQESKVKSE
                     CKDIYFSTKDITRIDKDKLKKGVLKRFYYFDSKNGAITLYDNQHQHGSSLKVNADVIH
                     YFLLKNFSSKDLIKLTEVQECWLKEAIDDAQRNNPFQYIDRKYLSLYRKITRLYAQIL
                     GVEQNRGEEKDLAKLTRDLINLQNGVVTSLLKTMPLITDDTSDDEHANKYAQKNFYSP
                     AGMSALFAPLYAAAKVFSYNNEMPISYGSDPYAYFELLLSWNKTLDESQFVRSEVVKE
                     KLENRAFKMLLENFANESNKTGLVKMGRSEVTICFKNIYTEIYSNQIERKKLDVDSII
                     NSNLTAIKNALEINTENDRGAIQFNEEKLRLILKQGINIIQQSFPKYMEHVNSLENNP
                     TVYFADNNPCVNKDHLEVRTAIEVLKDLCTKDLCPKVFVLDTTSATEAQIEDFLNVFN
                     QQDKIPILVTAASMVKHSEFGLDLWQGGINKAYLSEKSEKNENSQNEFARFITELKNV
                     TKGTEPGFTRFARRHVREAMNNINEAIKDSQDNSEPQDATCKDDVQNIPTNPISEESN
                     RKEEGQIINRELDEYVPLLTKKGFFAVQIEKVPEKNVNQNNKQKSLEEGEPPCCTII"
     gene            complement(2751..3038)
                     /locus_tag="JBH85_05220"
     CDS             complement(2751..3038)
                     /locus_tag="JBH85_05220"
                     /inference="COORDINATES: protein motif:HMM:PF13011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0945598.1"
                     /translation="MDAGYVCRKCGISRPNLRKWYRRYLKAGIDGLNDESKKPHLFPG
                     KLNSELIKLTLDLRISRNLGARGIQAELVRLPKCPLSLASIHKSLTNLTSI"
     gene            complement(3249..3539)
                     /locus_tag="JBH85_05225"
     CDS             complement(3249..3539)
                     /locus_tag="JBH85_05225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HAU0945599.1"
                     /translation="MRSFYVYIMASKRNGTLYVGSTVDLIKRVWQHKQKVVPAFTATY
                     NVHILVYYEIHQSYIEAARREKRFKNWPRQWKINTIEQLNSEWRDLYEDICR"
     gene            complement(3594..4343)
                     /locus_tag="JBH85_05230"
     CDS             complement(3594..4343)
                     /locus_tag="JBH85_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HAU0945600.1"
                     /translation="MPRLMLSDELWSKLKGIMLQHKIYDKPNLRMIVEGMLYHMRVGC
                     PWRDLPAAFGCWNSIYQQFNRWSFKDKLMQIFKALVHAPDLEWEFIDGSIVRAHQHST
                     GACSTESEAIGKSRGGNTTKIHMAVDAFGLPIEFQLTGGKVHDAKAAPELIEQLPKSD
                     YVIADKGYDSEDIREQIREKGSIPNIPRKSNSKTGNKDIDWYLYKYRHLVENMFACLK
                     HFRAIATRYDKLKRNYASMIAIACSCMWLPM"
     gene            complement(4524..5546)
                     /gene="ravT"
                     /locus_tag="JBH85_05235"
     CDS             complement(4524..5546)
                     /gene="ravT"
                     /locus_tag="JBH85_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavT"
                     /protein_id="HAU0945601.1"
                     /translation="MHECVIQIAILGYKRMYSKLLRGAATAVAGYVSYVLLNETKREH
                     EIKSKEEIKDCEDLVKNSSEFKEIGRPIHGTLSSSYVQHIETGNIYVKKGAHSRRDLV
                     KELMVSNALHKIREDQPECLIMQTPIKNGFQYHTLSRKFDHTQDVEEFVRNGRIDELR
                     KKEVIGLGDTLITDHIFGKQSDTKLANMVVRDKQDKLIFTSIDHERAVNPTSFSFFHP
                     TPPIYTKNKSTLIRSINDLGEQSEDNHAGLAGDPRAKEFGEVVENVINNLDIDNYYQK
                     VATTNLSSVISQCEKLAKASKGRLVQSEDCAGYESFFKEMQRNAKNQLESSKPQDDTP
                     VLRKSY"
     gene            complement(5638..6525)
                     /gene="ravW"
                     /locus_tag="JBH85_05240"
     CDS             complement(5638..6525)
                     /gene="ravW"
                     /locus_tag="JBH85_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavW"
                     /protein_id="HAU0945602.1"
                     /translation="MKQKIDYIARYFKLMSPIINREEINNIVKAQDELEITGAPEHGS
                     HKLSIVKELETGFEYVQKQTKNQTETEKEFMMASFLNKVNPNHPKCKLVETNNGSVSI
                     LSRKQENTQDVEQFVRAGRTNELLEKKVIGLEDTLIADNILGKQSDTKLANMLVKDEG
                     DTLVFSNIDHERANLPTFSLFNSGQRRYPTSAHELVSGIADLYEPSDDNRSGLAGDKR
                     AKEFGEVATKVIKQEKIKSAYEKVANADIDSVYKKCSSLSQNSTFFGGKNNCNAYRQY
                     FKEIQKEAADTVSKFDLKK"
     gene            7075..9057
                     /locus_tag="JBH85_05245"
     CDS             7075..9057
                     /locus_tag="JBH85_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945603.1"
                     /translation="MNKILLFVFGSIGLSLNIEISAAKGIVCKDYDGNPMTVKPKTIT
                     IFNNSEVTIYPVLATSKNAVNEWIQGCFRTTESYPTNYVYKLYVNEGTGIVPGSSVKI
                     TLPLYSQLANDRYITWWNGGRIVLADKNERLRNENDQALSTPEDVSCDGTNTECKLSV
                     YSSDVQFPENIYAQLSEYTFGDSIIPPKQSTRILKPENVGYNISYVDHVYMPVAIGPK
                     NNPYIGYSGSVMSLPTFRSHLNSFLETNLGHGWPVYNLNELKLPGGYNVFAQRSGTLP
                     PGDNVPVKPNDGFPPVLTVLACIQGDCTEEQKASLHFGESVQRMQNLWGSCVNWDEED
                     ISKYITQKVDCPQDLKGKLSAVQQFFKKNHQQYLQLYEHGKCNLTPGIDPVPFNYWEA
                     IKHIYGWVPFNEGCGAGANPLAETNIPGWDHAGIQSMYIHDLQYNYQNKPIPELLFNP
                     YVQLIHDKNYLSMDAYGFSVDDAVGFMSELGDGLIFTVGGTKGLENQQEFNYADGFSV
                     AIGVPLSLLDQVNTPMIKKYGVCVFNQDANDLNCQEVKQNVIMPTNSQIAGFRVGTVA
                     SYPIKVFFTDLNDNLYTFVVNTKFAPCSAEMDPSQCPTNKAEIIDTKSCIVTKSNGEK
                     HPKSNNWCQNANPNQQREKQLTKNFISFPPPVDYME"
     gene            complement(9190..10674)
                     /gene="gspE"
                     /locus_tag="JBH85_05250"
     CDS             complement(9190..10674)
                     /gene="gspE"
                     /locus_tag="JBH85_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
                     /protein_id="HAU0945604.1"
                     /translation="MENEEKSLKIPYSFAKSNGIVVGEIQENLAIVYHLPNTPLQAFA
                     EIKRLLQCELDLKQVDESTFQQHLANIYQSKSSILDAAEGMEEDMDLSMLASQLPVSE
                     DLLENQDDAPIIRLLNALFTQAIKQKASDIHIETYEDRVLVRNRIDGVLQEVLEIQRA
                     IAPLVISRVKVMAKLDIAEKRIPQDGRISLRIGGHNIDVRVSTLPSNHGERVVLRILD
                     KQAAQLDLNLLGMPEHTLKTVRQMIAEPHGIILVTGPTGSGKTTSLYAMLTELNQVTR
                     NILTIEDPIEYDLPGVGQTQVNTKVQMTFAKGLRAILRQDPDVVMIGEIRDLETAEIA
                     VQASLTGHLVLSTLHTNTALGALTRLHDMGVESFLLSSSIVGLIAQRLVRKLCSHCKT
                     PHELRQEEKELMGLKPDADVSQVFEPKGCDYCNHLGYKGRTGIYELIIVDETLRGMIH
                     RNENIQTMENYLRPTTPSIREDGFKRVLCGDTSLAEILRVTSQN"
     gene            complement(10678..13053)
                     /locus_tag="JBH85_05255"
     CDS             complement(10678..13053)
                     /locus_tag="JBH85_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II protein secretion LspD"
                     /protein_id="HAU0945605.1"
                     /translation="MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNL
                     EKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGPIDDYQTARALKEKLSQKTEKQF
                     NKISKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID
                     PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLL
                     SGMKSPPRGDDMMVAVIPVHYVPSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANN
                     IKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQPGIGSRTQITIAADD
                     RSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQ
                     ANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATAN
                     TTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILKTVISQLDIKPAQLLIEAL
                     VAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALAREQRAN
                     ILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVR
                     PQITRGQGIQLQIDQGNDTLDPATATTDNTTTPTFNISSIVTSVHVESGDIVVLGGLI
                     QDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMVFIKPIILRNERDNLHVTGEK
                     YNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSTPPQYSSKMTK"
     gene            13154..14254
                     /locus_tag="JBH85_05260"
     CDS             13154..14254
                     /locus_tag="JBH85_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAU0945606.1"
                     /translation="MLWFHSCHLCVLIYSQQFFSRKEYMDNAIIKWGILGTSFISEVM
                     ANAIQESKTSELVAIGSRTSKIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNH
                     LHKEWIIRCAQAGKNILCEKPFVVGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKL
                     QEIIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPISLVRLLANAEPIEIR
                     GIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGTKGHLKVETNPWL
                     PGSEGNKIYISLNTQSTPREISVKAEKSLYTYQIDFINEQVLKGDSRQFSKTSLLDSM
                     GNTIVLETWLKQILSSKPSLELSRLKDRLPHA"
     gene            complement(14275..16410)
                     /locus_tag="JBH85_05265"
     CDS             complement(14275..16410)
                     /locus_tag="JBH85_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HAU0945607.1"
                     /translation="MYFLQLEGKNMDSNFKISIRVSIITLFVLLLSLVGFTIIGINYI
                     AFNSVLNSSAKDSIEQTSLLVKERFEIYLNPLNQDLIKITNAINNGIINPDDSKQFDK
                     FLFESIRYNPEIFMVYYGSTTGDFIGVDREQKGIIGLTHVINSVSPPVNVRYQLNEQG
                     EIIGKKLLTRHYDPRVRPWYQQAIKAGKPIWTNVYTFYVFDKSDFLIPGITGASPIYN
                     KNKQIKGVIALDLTIDGLQHFIRELELTKNTMIYVINNESNIIAFRTPQNKKDIRGKK
                     LTPEWIKKLNIPLKKLDFNDFEPIIKSYTHDNQKYYLAYQPISSTNEKALWHIIIIVP
                     ETDVIEPLKDLSMRYILLTILVLLIGTLLVRIVSQRISNPIIQLTEEAKEITMLNLKP
                     RPLLKTRIKEVSYMDKTLSSLRSSLASFQRYVPGSLVKKLMRSGKIAQVGGQSQTITI
                     LFSDIKDFTSISESTSPQKLMTYLSDYFQSMTEIVIQHEGTLDKYIGDAIMALWNAPS
                     KDTNHSLHACLAAKIMIDRLSLLNQKNKHLGFPEFKIRIGIHTGDAVVGNVGSEDRLS
                     YTALGDSVNLASRLESINKNYHTQIIVSHATYTQVSEKFPFRLLDEVAVRGKRESIEI
                     YELITAQNLENLERHKKEFQKAFSLYQKGSWKESISAFAKLTPAYSDDQLASVYIERC
                     KVLAVNPPVNWDGIWREGKTDYSLLGKFD"
     gene            complement(16524..17684)
                     /gene="lbtC"
                     /locus_tag="JBH85_05270"
     CDS             complement(16524..17684)
                     /gene="lbtC"
                     /locus_tag="JBH85_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="legiobactin import MFS transporter LbtC"
                     /protein_id="HAU0945608.1"
                     /translation="MKKNALLIVLLTWFLGNMDIHFLTPALPSLVDYFSVTPNTVQLT
                     ISLFLLGKALSMILWGLLSERYGRKPIFIGGLLLFILSNFLIALNHSILPFLVCRFLQ
                     GISVGATLLMGRAMINDTHNEQNATKYFAWLFTLAGLFICFLPFFGGLINSYWNWQIA
                     SLIIAAYGLLLLPLCRGLKETKPHYVKFPRLGHSIMVVFNHPLFVSYLLISALMMAGE
                     SAFNTSASFILIKGENFTSAQYGTIKTTMAIMHLLGTACCGLIAKYYHSIQLTKLGVR
                     FFIFAAFLMWLFVFSAENIYLTFIVPMVIYYFGTGFIVASATASAVRPFPQQMALALA
                     ITLFCQFNCSAFFSFITSMIGIQQVETFMFLLSLVSILSFLALLKLQRMEPC"
     gene            complement(17681..18895)
                     /gene="lbtB"
                     /locus_tag="JBH85_05275"
     CDS             complement(17681..18895)
                     /gene="lbtB"
                     /locus_tag="JBH85_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="legiobactin export MFS transporter LbtB"
                     /protein_id="HAU0945609.1"
                     /translation="MNKLVQKMMLSGQFLMILALEMTNPFLPLLIAHQSNTPVPSVVI
                     YNTLSLVLPMLANILLTPIWGLAADRYGYKPMLMRASWALVLTQASMIFVNSVFWILI
                     IRLLQGAFAGFLVAMQTYALSITEWQSKSTQLSRLQSSKAIATSTAGFLGGLALSFTN
                     YQGLFGLATLICLGTTVVMHYKLPSPPKQQIKKRSQTLNHSYTSKSVFFFLCVLIMLT
                     QIAKFLPDPGFTLYLNKYCSNNLVLIGFLYSLPAMGMLCSSVWCGKQFDYCRSQPSLV
                     NQYLIRYSVFGAILMIIQANVDNFYLFALIRILWGIVLAALLPALFALCSDRNLLPGY
                     ALGLANSFAKLGNLIGLLLGGLFAFYLPYPAIFMIIAGIYSLFAIFVYGYDRLNVRQM
                     TDFSNSYFNVKS"
     gene            complement(18888..20630)
                     /gene="lbtA"
                     /locus_tag="JBH85_05280"
     CDS             complement(18888..20630)
                     /gene="lbtA"
                     /locus_tag="JBH85_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore legiobactin biosynthesis protein
                     LbtA"
                     /protein_id="HAU0945610.1"
                     /translation="MAAVLNNSYKINNSLHSLLLEKDLLVSQSEMEHFISIAHQQCLD
                     RLQHAALREGLIDKEITSLHIHDYLDLLYHQQKKQKPEKTFDRWPLLKKELDESINNQ
                     ALALAYYHCWQQSLKQQAKNHSSLWSWLSEQHNKQQILTFLEQWGCIGHPYHPNFRAK
                     MGFIPEEVIRYSPEFNAQVDIPWLAIHRSVAFTSIDATSYSLLFAQHFAKEYQLWNYS
                     VQKQQLDPDQYLPLPVHPWQWNNKLQTLASVLINSKQLLITEAVQKTKPSMSFRTMMP
                     LDNKGPHLKLATAIHTTSALRTVSPASVSNSSPLSSWLRQLLTQYQSFEKPLFLARDL
                     AGINTTHPSISPQNKKHLAMIVRENPLELIDASQTLVPVAALYAISPVSQRALFVEII
                     EASGMEPELYFIEYSRCILECQLHLLLSYGVALEAQQQNTLVIFQSHRPVGLVIRDLG
                     GIRVCFNSLYETTPKPNLHPDSTISCHELSDLFNTFIYGNLLSNLTFCINCLHDNYNL
                     TKKNLWILLKQIANQLLQNFKKEINPLIYQKFQQHLFSLPWQHKSLLSMRLNQNQDNL
                     VFFSLDNPLSQDNE"
BASE COUNT         6456 a         3646 c         3967 g         6577 t
ORIGIN      
        1 cataggggga aatgctacac gagtagataa gattattgaa tatcaaagta acggtatttc
       61 ttataaaaga ggaaatcaat taacccttaa attaaaagat agggtattgg aacataaaac
      121 aaatgtggta gaaaccctgg ttcggcattt aaaagacgaa aattttaagt gtctaaaggt
      181 tgatagcaac caacttaaag ccaaatatcc ttgtttaatt gttaccttta aatatgatga
      241 gtataggagt aaacccgaaa atatccctga aggatactct gagtttgtta cccatatgat
      301 gattgctcag attaatttaa aattaaaaga aaaaaatctg tccccattga tagataggcg
      361 acaaagtttt gggtttctca ccccgacatt aaccgatgtt catacgggtg ttagattatc
      421 acttggcctt acaccaaata aacagtggat agaatgtgtt gaagaaggaa taaaacagac
      481 agataagtcc ttagcaaaat ttacgttgaa agacaaagat gatttactca atctatttag
      541 agctggagag ttttgtgggg atgggcataa atacctttat gacttatata aaacaggaga
      601 aaaaacacaa gaagaagtaa acaagtttct acaagaatca aaagtgaaat cagaatgtaa
      661 ggacatttat ttttcaacaa aagacataac gcgtattgat aaagataaat taaaaaaagg
      721 cgtattgaaa agattttatt actttgatag taaaaatgga gcaattactc tttatgataa
      781 ccagcaccaa catggatctt ctttaaaagt taatgcagat gttattcatt attttctttt
      841 aaaaaatttt tcctctaaag atttgataaa attgactgaa gtacaggagt gttggttaaa
      901 ggaagcaatt gatgatgcac agaggaataa tccgtttcaa tatattgacc gaaaatatct
      961 atctttatat agaaagatca ctcgtcttta cgcgcaaata cttggtgttg aacagaatcg
     1021 tggagaagaa aaggatctag ctaagttaac gagggacttg attaatcttc aaaatggggt
     1081 tgtcacttca ttattgaaaa ctatgccctt gattacggat gataccagtg atgatgagca
     1141 tgccaataaa tatgcacaaa aaaattttta ctcaccagca ggtatgagcg ctctatttgc
     1201 gccgctttat gcagcagcaa aagtgtttag ttataataat gagatgccaa tttcttatgg
     1261 cagtgaccct tatgcatact ttgagttatt attatcttgg aataaaacct tagacgagtc
     1321 acaatttgtg cgttctgaag ttgttaaaga aaaacttgaa aatcgcgctt ttaagatgct
     1381 attagagaat tttgcaaatg agtcaaataa aactggcttg gtcaaaatgg gaagatctga
     1441 agtaacgatc tgttttaaaa atatttatac tgaaatttat agcaatcaaa ttgaaagaaa
     1501 aaaacttgat gtagattcaa ttattaattc aaatttaaca gcaattaaaa atgctttgga
     1561 aataaatact gaaaacgata ggggggcaat ccaatttaat gaggaaaagc ttaggttaat
     1621 attaaaacaa ggaataaata ttatccaaca atcttttcca aagtatatgg agcatgtaaa
     1681 tagcctggaa aacaatccta cagtgtattt tgctgataac aatccttgtg ttaacaaaga
     1741 tcatctggag gtaagaactg ccatagaagt tttaaaagat ctttgcacta aagatctttg
     1801 cccaaaagtg ttcgtcctgg acacaacttc tgcaactgaa gcccaaatag aagatttttt
     1861 aaatgtgttt aatcaacaag ataaaattcc aattcttgtg actgctgcaa gtatggttaa
     1921 acacagtgaa tttggattag atttatggca gggaggaatc aacaaagcct atttgtcaga
     1981 aaaatcggag aaaaatgaaa attcgcaaaa tgagtttgca cgctttataa cggaactcaa
     2041 aaatgttacc aaaggaaccg aaccaggctt tacacgattc gcaagacgac atgttcgaga
     2101 agcaatgaat aatataaatg aggcgataaa agattcacaa gataatagtg aacctcaaga
     2161 tgcaacatgt aaagatgatg tgcaaaacat accaactaac cctatttctg aagaaagcaa
     2221 taggaaagaa gaaggacaga taattaatag agagcttgat gaatatgtgc ccctacttac
     2281 aaagaaagga ttctttgcgg tacaaattga aaaggtgcca gaaaaaaatg ttaatcaaaa
     2341 taataaacaa aaatctcttg aggaaggaga gccgccttgc tgcacaataa tttaacctca
     2401 gctcgacata tttttataat gtgtagtagt tcaaacttga tctgacagtt accggttttt
     2461 caagtagttg tgtcagatta agttgaaact cattcagtta atgacaaaat tatcttaatt
     2521 tcactagctg acagcctaca agggcgttgt cttttgcgat tcggtaatgg aagtaaataa
     2581 ggcgacattt ctttaaacca tgccttgcaa aaatcatcaa tatcacagaa tatttctact
     2641 gtcgctgcta acatcttgtt tcctttcata attcagaggt gagttttaaa gaaacaaaat
     2701 gtatatagta ccgataattt tttcaataat tcaatgacat agacttattc ttatatcgag
     2761 gtgaggttag ttaatgattt atggatgctc gctaaagaaa gtggacattt gggcaatcta
     2821 accaattcag cttggatacc cctggcgccc aaattacgac tgatacgcaa atcaagagtt
     2881 agtttaatca gctctgaatt taacttccct ggaaataaat gaggcttttt gctttcatca
     2941 tttaatccat cgataccagc ctttagatag cgtctgtacc actttctcag gttaggacga
     3001 gaaataccac atttacggca aacatatcct gcatctatag tctcaagata tagatttacc
     3061 taagttaacc tagctttaat ttgctgtttc ataaggtggg taaatctatc aattaattga
     3121 aacgatgtct atgaatcaca caattaaaca tattttgtat aaggtcactg gtaattacta
     3181 gggtctgttg acaattcact cctccagcct acgtgacgcg gcttgtccgc ggcatccaga
     3241 cgatctgatt agcggcaaat atcttcgtat agatcacgcc attctgaatt taactgttca
     3301 atggtgttta ttttccattg tcgaggccag tttttgaaac gtttttcacg ccgtgcagcc
     3361 tcgatgtagc tctgatggat ttcgtaataa actagaatat gcacattgta agtagcagta
     3421 aacgccggaa ccactttctg cttgtgctgc caaacgcgtt taatcaaatc aaccgttgaa
     3481 ccgacgtata atgtcccatt acgcttgctc gccatgatat agacgtaaaa tgacctcatc
     3541 ctgcttcctt gttgatattg gactcacagg aatgataaca ctggatggtg tgattacata
     3601 ggcagccaca tacaagagca agcgattgca atcatggagg cataatttcg tttcaatttg
     3661 tcatatcgcg tggcaatggc gcgaaaatgt ttaagacatg caaacatgtt ttccaccaga
     3721 tgccgatatt tgtacaaata ccaatcaata tccttattac cggttttgga gttacttttc
     3781 cgtgggatgt ttggtataga acccttttcc ctgatttgtt cccgaatgtc ttcactatca
     3841 tatcctttgt cagcaataac ataatcagat ttgggcaatt gttcaattag ctctggcgcg
     3901 gcttttgcat catgtacctt gcccccggtt agttgaaatt caataggtaa cccaaaggca
     3961 tcaacagcca tatgaatttt tgttgtgtta cctcctctgg acttaccaat ggcttcgctt
     4021 tctgtactac acgcgcctgt gctgtgttgg tgagcacgaa caatactccc gtcgatgaat
     4081 tcccattcaa gatcgggagc gtgcacaagt gctttaaaaa tttgcattaa tttatctttg
     4141 aatgaccaac gattaaattg ttgataaatt gaattccagc atccaaatgc tgctggtagg
     4201 tctcgccaag ggcaaccaac acgcatgtga tataacattc cctcaacgat cattcgcaga
     4261 tttggcttgt cataaatctt gtgctgtagc atgattccct tcagctttga ccatagctca
     4321 tcactaagca tcagtcttgg cattgcaaac tcattttata tctggggtga gaaccagtat
     4381 attatgagtt tgcttctact tatcaataga ttaactgatt attcaaactc ggtgttacct
     4441 ttaccatcgc ctggatgccg cggacaagcc gcggcacgta gggtggagga gtgaattgtc
     4501 aacaggccct agcaactagt tggctaataa ctttttcgca ggaccggtgt atcatcttgt
     4561 ggtttagatg attctaattg attttttgca tttctttgca tttctttgaa gaaagattca
     4621 taaccagcgc aatcttctga ctgcactaac ctgcctttac tggctttagc taacttctcg
     4681 cattggctta ttacactaga caaattcgtt gtagctacct tttgataata attatcaata
     4741 tccaagttat ttataacgtt ttctactact tcaccaaact cctttgctct gggatcacct
     4801 gctaaacccg catgattatc ctcgctttgt tcgcctaaat catttatgga tcggataagt
     4861 gtagatttat tctttgtata aataggaggg gtaggatgaa agaaactaaa gcttgttggg
     4921 ttaactgccc tttcgtgatc aattgaagta aaaattagtt tatcttgctt atctctgacc
     4981 accatattag caagttttgt atcagattgt ttaccaaaaa tatgatcagt tatcagtgta
     5041 tctcctaatc caatgacttc ttttttcctt aactcgtcta ttcgtccatt acgaacaaat
     5101 tcctcaacat cttgagtatg atcaaatttt cgagacaagg tgtggtattg gaagccattt
     5161 tttattggtg tttgcataat taaacactca ggttgatctt ctcgaatttt atgaagggca
     5221 tttgatacca ttagttcttt tactaaatcc ctacgagaat gagctccttt tttaacatag
     5281 atattcccag tctctatatg ctggacataa gatgatgaga gagttccatg aattggccta
     5341 cctatttctt taaattcgga tgaattttta acaagatcct cgcagtcttt aatttcttct
     5401 ttagatttta tttcgtgttc tctttttgtt tcattcagca acacgtaaga tacgtatcca
     5461 gccacagcgg tagcggcgcc tcgtaataat ttactataca ttcgtttata tcctaaaatt
     5521 gcaatctgta tcacgcattc gtgcatgact ggggcctttt ggaatagcca tagtaagcta
     5581 gagagcctaa gactacaacc atctagctta ttatattgat cagggtagat ttactattta
     5641 ttttttcaaa tcaaattttg acacagtgtc tgccgcctct ttctggattt ccttgaaata
     5701 ttgccgatag gcgttacaat tatttttacc tccaaaaaac gtactgtttt gagataaaga
     5761 gctgcatttt ttatacaccg aatctatatc ggcatttgca actttttcat aagctgattt
     5821 aattttttct tgttttatta ctttcgtggc cacctctcca aattcttttg ctcgtttatc
     5881 accagcaaga cccgaacggt tatcatcact aggctcgtat agatcggcaa taccgctaac
     5941 taattcatga gcagaagttg gatatctcct ttgtcccgaa ttaaataaac taaacgtggg
     6001 taaattagct cgctcatgat caatattaga aaaaactaag gtatcacctt catctttcac
     6061 aagcatattc gccagtttag tatctgactg tttgcctaaa atattatccg ctattaacgt
     6121 atcttcaaga ccaatcacct ttttctctaa taattcattt gttcttcctg ctcgaacaaa
     6181 ttgctcaaca tcttgtgtgt tttcttgttt gcgagataag atactgactg aaccattatt
     6241 agtttctact agtttacatt ttggatgatt tggattgacc ttatttagaa aacttgccat
     6301 cataaattct ttttcagttt cggtttgatt ttttgtctgt ttttgaacgt actcaaatcc
     6361 tgtttctagc tctttaacta tagaaagttt atgtgatcca tgttctggtg ctccagtaat
     6421 ttcaagttca tcttgagctt taacaatatt attaatttct tctctattaa taataggaga
     6481 catcagttta aaatatcgtg caatgtaatc aattttttgt ttcataagaa cacctcaaat
     6541 tttatatttt atatttaacc aatgatcagt tggcttaata aataaacatt ttaaattaaa
     6601 agaattaagg ctttatttgg aagttgtcgt atttgtgcca aagacgttag acgaagttat
     6661 tttgggctta tttaagccgc taatgcatag aattgttcag aacgaatcat tctttttgat
     6721 aaaatatgtt ggttttttct caacatatga tgcagtgcaa gaagcggttt cccactattc
     6781 tgatcgagta agtcagtctt tgacagccat ttccatataa agcggagctt gttgtcttat
     6841 cagtttttta gacaagatat aatcttgaaa tgagcacata tttttcaatt tcacttcgaa
     6901 tagcctcaga gaggcttgag ccgtgtgcgg ggaaactcgc atgcacggtt cttaggagag
     6961 tggtggccgg taacggccac tgcttatccg accaactcgc tgacagatga ttgctaattt
     7021 gaaaaattac tttttgtgct atttttataa aatattgtac aaagagaaat taatatgaac
     7081 aaaatactgc tttttgtctt tggaagtata ggtttgtcat tgaatataga gatttctgct
     7141 gctaaaggca ttgtgtgcaa agactacgat ggcaatccaa tgacagtcaa accaaagaca
     7201 atcactatat ttaacaactc tgaagttacg atttatcctg ttttggcaac cagcaaaaat
     7261 gcagtaaatg aatggattca aggctgtttt cgtaccacag aatcttatcc aacaaactat
     7321 gtttataaac tgtatgtgaa cgaggggaca ggaatagttc caggttcctc agtaaaaatt
     7381 accttgccat tatatagtca attagcaaat gatcgttaca tcacttggtg gaatggaggg
     7441 cgtatcgttt tagctgataa aaacgaaaga ttgagaaatg aaaacgatca ggcattatcg
     7501 acccctgaag acgttagctg tgatgggaca aataccgagt gtaaattaag cgtatattct
     7561 agcgacgttc agtttccaga aaatatatac gcgcagttat cagaatatac tttcggcgac
     7621 tctattattc cacccaagca gtcaacaaga atattaaagc cagaaaatgt aggctataac
     7681 atttcctacg tagaccatgt ttatatgcct gttgcaatag ggcctaaaaa taatccttat
     7741 attggatata gcggttcagt aatgtccttg cctacattta gaagccatct taattcgttt
     7801 ctagagacga atttaggaca tggttggcct gtttataatc tcaatgaatt aaaattacca
     7861 ggaggttata atgtttttgc acaaagatct ggcacattac ctcctgggga caatgtacct
     7921 gtcaagccaa atgatggttt tccaccggta ttaacagtgt tagcttgtat tcaaggggat
     7981 tgtaccgagg aacaaaaggc atcactccat tttggtgagt cagttcaacg tatgcagaat
     8041 ttatggggtt cttgtgtcaa ttgggatgaa gaagacatca gcaaatatat aacccaaaaa
     8101 gtggactgtc cacaagactt aaaaggaaag cttagtgctg tacagcaatt ttttaaaaaa
     8161 aaccatcaac aatatttgca gctgtatgaa catgggaagt gcaatttaac ccccggcata
     8221 gatcctgtgc catttaatta ctgggaagcg attaagcaca tatatggttg ggttcctttt
     8281 aacgaagggt gtggtgctgg cgctaatcca ttggcagaga caaatatccc aggatgggat
     8341 catgctggga ttcaatccat gtacattcat gatttacagt ataactacca aaataaacca
     8401 atacctgagt tattattcaa tccttatgtc caattaatcc atgataaaaa ttatctttcc
     8461 atggatgctt atgggttttc tgtcgatgat gctgttggct ttatgagtga gctaggagat
     8521 ggattgattt ttactgttgg tgggactaaa ggtcttgaaa atcaacaaga gtttaattat
     8581 gccgatggtt tttctgtggc cattggtgtg ccattatctt tattagacca agtaaatact
     8641 cctatgatta aaaagtatgg tgtatgtgtg ttcaatcaag atgccaatga cttgaattgc
     8701 caggaagtaa agcaaaacgt tattatgcct actaatagcc aaatagcggg atttagagta
     8761 ggtacggtag cttcatatcc tatcaaggta tttttcactg atttgaatga taacctgtat
     8821 acctttgtcg tcaatacgaa gtttgcccca tgctctgcag aaatggatcc atctcaatgt
     8881 ccaacgaata aggcagaaat tatcgataca aaatcttgta ttgttaccaa gagcaatgga
     8941 gaaaagcatc ccaagtcgaa taattggtgt caaaatgcta atccaaacca acaaagagaa
     9001 aagcaattga ctaagaattt catcagtttc ccaccgccgg tagattatat ggagtaggtg
     9061 ctgaattata atgcgacttt agaacttttt cttaggctaa ttactttgtt taattaagct
     9121 gataaattaa atgattaata tcttgaagat gtggtgtgac tgtttaaaaa ttgctaaagt
     9181 atgggtaatt tagttttgag aggttactct taaaatttct gcaagtgacg tatcgccaca
     9241 taatactctt ttaaaaccat cttcacggat gcttggagtg gtgggtcgta aataattttc
     9301 catcgtttga atattttcat tacgatgaat cattcctctc agggtttcat ctacgataat
     9361 taattcataa attcctgttc ttcccttata acccaagtgg ttgcaatagt cgcatccctt
     9421 gggttcaaag acctgagata catcagcatc aggtttaagg cccattaact ccttttcttc
     9481 ctgtcttaat tcatggggtg ttttgcaatg agagcataat ttccttacca aacgttgtgc
     9541 aatgaggccg actatactgg atgacaataa aaaagactca actcccatat catgcaggcg
     9601 agttaatgct cccaatgcgg tattggtatg aagggttgat agtaccaaat gccctgttaa
     9661 gctggcttga acagcaattt cagccgtttc caaatcacgg atttctccta tcatgacaac
     9721 atccggatct tgacgtaata tagcccttaa tcctttggca aaagtcattt gaactttagt
     9781 attaacctgc gtttgtccta caccaggcag gtcatattca atgggatctt caatggttaa
     9841 aatattacga gtcacctgat ttagttcggt gagcatagca tagagagatg ttgtcttgcc
     9901 tgaacctgtt gggccagtga ctaaaataat gccatgaggt tcagcaatca tttgtcgtac
     9961 tgtttttaat gtatgttcag gcatacccaa aagatttaaa tccagttgag cagcttgttt
    10021 atccaatatc cttaaaacca ctcgctctcc atggtttgag ggtaaagttg agaccctgac
    10081 atcaatattg tgtcctccta tacgcaatga aattcgacca tcttgaggaa ttctcttttc
    10141 ggcgatatcc aatttggcca tcaccttaac tctggaaatg accaaaggag cgatagctcg
    10201 ttgaatttca aggacctctt gcagaacacc atcaattcga ttgcgcacca atactctgtc
    10261 ttcataagtt tcaatgtgta tatcagatgc tttttgttta atcgcttggg taaacagagc
    10321 gtttagtaag cggataattg gggcatcgtc ttggttttcc aataagtctt cactgactgg
    10381 aagttgactg gccaacatgg ataaatccat atcttcttcc atgccttctg cggcatccag
    10441 tattgaagat ttagattggt aaatattggc taaatgttgc tgaaaagtgg attcatcgac
    10501 ttgttttaga tcaagttcgc attgcaataa tctttttatc tcagcgaaag cctgcagtgg
    10561 tgtgttaggt aaatgataga caatagccag attttcttgt atttctccca caacaattcc
    10621 attgcttttg gcaaaactgt aaggaatttt aagtgatttt tcttcatttt ccatgattta
    10681 tttggtcatt tttgatgagt attggggagg agtactaaaa ggtactggta gattgccttg
    10741 agttaatggg ggcaacactg tttcatcatc tgtttgttca aaagcctctt gggagcgaat
    10801 ccaatccagc tgatattgac ggacataatt gtatttttcg cctgtgacat gcaagttatc
    10861 tctttcgttg cgtaatatga taggtttaat aaataccatg agtactcgct tgtctctgtt
    10921 acgaatatta cgttgaaaca atctgcctat tccagggata tctcctaaaa tgggtaattt
    10981 attattgtca tttccaatac tgtcctgaat caacccccca agtactacaa tatcaccact
    11041 ttctacatga actgaagtta caatactgct tatattaaaa gtgggggttg ttgtgttgtc
    11101 tgttgtagca gttgcaggat ccaaagtatc attcccttga tcaatctgta gttgaattcc
    11161 ttgtccgcga gtaatttgcg gccttacata aaggtgcaac gcaacgttaa ccctgtcaaa
    11221 tgttgtgaaa ggacttgctg tggtagtgcc tcctgcatta ttggggtagc tggttgttgc
    11281 tattgagacc tgtttaccta tgagtatttt tgcttgacga ttatcaagga ctactacgga
    11341 gggagttgat aaaatatttg ctctttgctc tcttgccaag gcataaattt gagcctggaa
    11401 atcgtcaatc ctggttttac tgtttataat ggcaaagcct ggtctgaagt ccttgggatt
    11461 gcctgtttgt tgatttgatc cccactctat tcccagattg ttaacgtcct tttcatccac
    11521 ttcagcaacg agggcctcga ttaatagttg agcaggtttt atatctagct gagaaatgac
    11581 tgtttttaga atacgaataa ttgaagcagg tgcattaaga ataatagagt tagtgttcgg
    11641 ttctcctatt atctgtacag taggcttggt agagccttca ttttgagtac ttgctgatgt
    11701 cgtgtttgct gtcgctcctg aggcattcat aggggcagaa ctggtcgaag tggagcttaa
    11761 tgaagagctt tgcccatcgg cagaggtatt ggcaagactg gaggcagggt tggtgctgtc
    11821 taatgcgggt cttgtaatgg ttccaatggt tgttcctaca tttccactaa aattggcttg
    11881 ggctatacct gccagtatag ggactaaatc ttcagctctt aaataattca ggtaaacaac
    11941 ttgtgtattt gaattgactc ctgttgagct gtctttatcc agtttcaata tgagcattcg
    12001 caaacgaatt ctatccgttt tgctcccact gactaaaatt gagttggaac ggtcatctgc
    12061 agcaatggta atttgtgttc tgctgccgat accaggttga gttttaacca ggtcttttaa
    12121 agtgtttgca acatccatag ccaaagcatg atgtaaacga accatgtcta tgccgtttgc
    12181 acttgagcta tctacttgtt tgataatttc cgcaaggctt ttaatattgt ttgctcgacc
    12241 agacagaatc aacatattag aaggagcata ggcagatacg ctgctccatt ggggcattag
    12301 tggccttaga acaggtacca gttgttcaga aggaacataa tgaaccggta ttacggcgac
    12361 catcatatcg tcacctcgtg gaggactctt cattccactg agtaaatcag gtgactgtgt
    12421 ttttgcatca atattgggaa taattttgat aatttctcca ttaggtattg cggcataacc
    12481 tgatacctgc agtactgaga gaaagacttg atatagctcg cggctggata acggcgttga
    12541 tgaaacaatc gatacttttc cttgtactct gggatcaata acaaaatttt tacctgtaat
    12601 tcgagagact tctgcgatta cggctctaat atcagcgtta cgtaaattcc ataatttact
    12661 gcctggagga gccgtttgcg cttgttccat atttttaggc agttggctta cctcaagtga
    12721 agaggtttga tttttgctaa ttttattaaa ctgtttttct gttttttgag ataacttttc
    12781 tttgagtgct cttgcagttt ggtaatcatc aattggacca atctgcacaa ggtaaagatg
    12841 tttgtcagcc aggtttttaa tttcaacttt ttgatcgact aatttggcaa gttcattttg
    12901 gcgtatttta gcgtcttttt cgagattata ggcaccagct tgaagataaa aaaatgtatt
    12961 gccatctttg gttacggttg aaatattgac atcattagca cgtactaatg aacaacaaac
    13021 gaaggctaaa agtataatta ctatcgagcg catttaaaaa ccgtaaaata atggataatg
    13081 acataataac taaatttgac tgcttaccat agctttttta ataacttaga gcaggaaatt
    13141 taagtggttt ttactgctat ggtttcactc gtgtcattta tgcgttttaa tatacagtca
    13201 gcaatttttt agccggaagg aatatatgga taatgcgata ataaaatggg gaattttagg
    13261 tacaagtttt atctctgaag tgatggctaa tgcaattcag gaatcaaaaa ccagtgagct
    13321 tgttgctatt gggagtcgaa caagcaagat agccaaacga ttttctgaaa aattcgctat
    13381 tccaaaattt tatgacaatt atcaatcatt aattctcgat agtgatatag atgtggttta
    13441 tatagggtta cctaatcatc tgcataaaga atggattatt cgttgtgcgc aggcaggaaa
    13501 aaatattttg tgtgaaaaac cttttgttgt tggtatagaa gaaatccatg aggttatttc
    13561 agtaattgag agaacaaatg ttttttgtat ggaagctcta atgtaccgat atcatccctt
    13621 tataaaaaaa ttacaagaga tcattcaaag caacacaata ggtaagataa agttatataa
    13681 tgcgacatat acagcaaaca ttgcagaaat agccaatcct gttgcgggag gaagtatacg
    13741 taatctcgga tgttacccaa tttccttagt gaggctgctt gctaacgcag agccaatcga
    13801 aatccgtggt attggaagaa tgaattccag gaataacacg gatagtcaag ccagcgttct
    13861 tttaaaattt gaagacgatt caattgcagc agtttccact gccgatgata ttgaaatgca
    13921 ttggcaattc gaggtttatg gaacaaaagg ccatttaaaa gtagaaacga atccctggtt
    13981 gcctggctct gagggtaaca aaatttatat ctctctcaat actcaatcaa cacccagaga
    14041 aataagcgtg aaagcagaaa agtcacttta tacctatcaa atagatttta tcaatgagca
    14101 agtattgaaa ggggattcca gacaatttag caagacgtct ttattagata gcatgggaaa
    14161 tacaatcgtt ctggaaacct ggctaaaaca aatactctct tcaaaaccaa gccttgaatt
    14221 atccagatta aaagacaggc tgcctcatgc ataagcaaaa aggttctggt gatactagtc
    14281 aaattttccg agaagagagt aatctgtttt tccttcgcgc cagataccat cccaattgac
    14341 aggtggatta actgctaata ccttgcagcg ttcgatgtaa acggaagcta attgatcgtc
    14401 agagtaggct ggagtaagtt ttgcaaacgc gcttatactt tctttccagg aacctttttg
    14461 atagagagaa aatgcttttt gaaattcctt tttatgtcgc tcaagatttt caagattttg
    14521 ggctgtaatc agttcatata tctcaatact ttcacgctta ccccttacag ccacttcatc
    14581 taacaaacgg aaaggaaatt tttcagatac ttgagtgtaa gtggcgtgac tgacaatgat
    14641 ttgagtatga taatttttat taattgattc caggcgactt gccagattga ctgagtcgcc
    14701 caaggctgta taacttagcc tatcctctga accaacatta cccacaacag catctccggt
    14761 gtgaatgcca attctgattt taaattcggg aaatccaaga tgtttattct tttgatttaa
    14821 caggctaagg cgatcaatca tgattttggc agccaggcat gcatgcaatg aatgattggt
    14881 atcttttgaa ggtgcattcc ataatgccat gatagcatcg ccaatgtatt tatccaaagt
    14941 cccttcatgt tgtattacta tctcggtcat ggactggaaa taatcggata aataggtcat
    15001 taatttttgt ggtgaggtgg attctgaaat acttgtaaaa tcttttatat ctgaaaataa
    15061 aatagtaatt gtttggcttt gccctccaac ttgagcaatc tttccgctac gcattaattt
    15121 ttttaccaaa gatccgggaa catagcgttg gaatgaagct aagcttgatc tcagagatga
    15181 tagtgtttta tccatataac tgacttcttt aatcctggtc ttcagaagtg gcctgggttt
    15241 gaggttaagc atggtaattt ctttagcttc ttcagtcagt tgaataatag gatttgatat
    15301 tctttgtgaa acgatacgaa ctaataatgt cccaatcagc aagaccagta tagttaacaa
    15361 aatatagcgc atgcttaagt ctttcagtgg ttctatcaca tctgtttcag gaacaataat
    15421 aataatatgc catagtgctt tttcatttgt actggatata ggttggtatg ctaaataata
    15481 tttttgatta tcatgagtat acgatttgat gatgggttca aaatcattga aatcgagttt
    15541 cttaagtgga atattcagct tttttatcca ttccggggtt aatttctttc cacggatgtc
    15601 ttttttattt tgaggggttc tgaaagcaat gatattggac tcattattaa tcacataaat
    15661 catagtgttt ttagttaatt ccagttctcg gataaaatgt tgtaaaccat caatagtcag
    15721 gtcaagagca atcactcctt ttatttgctt atttttatta tatattggtg aagccccggt
    15781 aattccaggg ataaggaagt cacttttatc aaatacataa aatgtatata cgtttgtcca
    15841 tatcggtttc cctgctttta tagcttgttg ataccacggg cgaactctgg gatcataatg
    15901 gcgtgtcagc aatttttttc caattatttc tccttgttcg tttaattgat aacgaacgtt
    15961 gactggaggt gatacggaat taatcacatg ggttaaccca attattccct tttgctctct
    16021 atctactcct ataaaatcac cagttgttga accatagtaa accataaata tttcaggatt
    16081 atatcgaatt gattcaaaaa gaaatttatc aaattgtttt gaatcatcag ggttaatgat
    16141 gccattattt atggcatttg ttattttaat taaatcttga tttaaaggat ttaaatagat
    16201 ctcaaacctc tctttgacga gtaatgatgt ttgctcaatt gaatctttag cgctactgtt
    16261 aagaacacta ttgaaagcaa tataattaat accaataata gtgaacccta ccaggcttaa
    16321 caaaagcaca aataaggtaa tgatgctgac acgtatactg attttaaaat tactatccat
    16381 attttttcct tctaattgaa ggaagtacac aggttctaag cgaaatgcga ttaagaactt
    16441 attttaaata agcatagtct tctttaggca gaaatacacg caaactttat attttcttac
    16501 caggatcaaa gatcatggtt ttttcagcag ggctccattc gttgaagttt tagaagggca
    16561 agaaaactca aaatacttac caaacttaat aagaacataa aagtttctac ttgctgaatt
    16621 cctatcatgc tggtaataaa actaaagaaa gcggagcagt taaattgaca aaataaagtg
    16681 atagctaatg caagagccat ttgctgagga aaagggcgaa cagctgatgc tgttgctgat
    16741 gcaacaatga aacctgtacc aaaataataa atcaccatag gcactataaa agtcaaatat
    16801 atattttcag cagaaaagac aaataaccac atcaagaatg ctgcgaaaat aaagaaacgt
    16861 actcctaatt ttgttaattg gatactatga taatattttg ctattaagcc acaacaagcg
    16921 gtacctaata aatgcataat tgccatagta gtcttgattg taccatactg agcgctggta
    16981 aaattttctc ctttaataag aataaaagag gcgctggtat taaacgccga ttctccagcc
    17041 atcatcaagg cagaaataag gaggtaagaa acaaaaaggg gatggttgaa gaccaccata
    17101 atactatgac ctaggcgagg gaattttaca taatggggtt tggtttcttt taaacctcga
    17161 cataaaggta ataaaagcag gccataggca gcaatgataa gagaggcgat ttgccaattc
    17221 caataactgt ttatcaaacc tccaaaaaat ggaagaaagc aaataaacag cccagccaga
    17281 gtaaataacc acgcaaagta ttttgtggca ttttgttcat tatgggtatc gttaatcatt
    17341 gctctaccca ttagaagggt agcgcctacg ctaattccct ggagaaatcg gcatactaaa
    17401 aagggaagga tggagtggtt tagagcaatc agaaaattgc tcagaataaa taacaacagt
    17461 cctccaatga agattggttt tcttccataa cgttcggaaa gaagacccca taaaatcata
    17521 ctgagggctt ttcccaaaag aaaaagactg atagttagtt gaactgtatt gggagttacc
    17581 gagaagtaat caactaatga tggcaaggct ggagtaagga aatgtatatc catgtttcca
    17641 agaaaccagg ttaataacac tataagaaga gcattttttt tcatgatttc acgttaaaat
    17701 aagaattgga aaaatctgtc atctgcctga catttagccg atcatacccg taaacaaaaa
    17761 tcgcgaataa actataaatt ccggcaatta tcataaaaat tgcaggatat ggtagataaa
    17821 atgcaaaaag accacccaat aacaatccaa ttagatttcc cagttttgca aatgaattgg
    17881 ctaatcccaa ggcataacct ggtaacaaat tacgatcact gcacaaagca aataacgcag
    17941 gcaataaggc tgcaagtacg atcccccaca aaatacgtat aagagcaaac agatagaaat
    18001 tatctacatt ggcttgaatg atcatgagga tggctccgaa tacactatag cgtattaaat
    18061 attggttaac caaagaaggt tgacttcgac agtagtcaaa ctgtttgcca caccatactg
    18121 aactacatag catccccatt gccggtaaag aataaagaaa tccaattagt accagattat
    18181 ttgaacaata cttattgaga tacagggtaa accctggatc aggtaaaaac ttggcaattt
    18241 gggttagcat gattaatacg caaagaaaga agaaaacact ttttgatgtg taagaatgat
    18301 ttaatgtttg tgatcttttc tttatctgtt gctttggtgg ggagggtaat ttgtagtgca
    18361 tcactacagt agtgcccagg catatcaatg ttgccaaacc aaataatcct tgatagttag
    18421 tgaagcttaa agctaatcct ccgagaaatc cggctgtaga agtggcaatt gccttggagg
    18481 attgcaagcg agataactgt gtgcttttgc tttgccattc agtaatgctt agggcatagg
    18541 tttgcattgc aacaagaaaa cctgcaaaag ctccttgcag taatcggatg attaaaatcc
    18601 agaatacaga attaacaaaa atcatactgg cctgggtcaa caccaaggcc caggatgctc
    18661 tcattaacat gggtttatag ccatatcgat cagctgccaa gccccagatt ggggttaata
    18721 gaatgttagc cagcatcggt agaactagac tcagcgtgtt ataaatcact accgatggta
    18781 ctggtgtgtt gctttggtgc gcgatcaata gtggcagaaa aggattcgtc atttccaagg
    18841 ccaatatcat caaaaactga cctgagagca tcattttttg aactagttta ttcattatct
    18901 tggctcaatg ggttgtcaag actaaaaaat accaggttat cctgattttg attgagtctc
    18961 atgctcagca aacttttatg ttgccaggga agagagaata aatgttgttg gaatttttgg
    19021 tatatcaatg gattaatttc ctttttgaaa ttttgtaata attgatttgc aatttgtttt
    19081 agcaggatcc aaaggttttt tttagtcaag ttatagttat catgtaaaca attaatgcaa
    19141 aaagttaagt tactcagtaa atttccataa atgaaggtat taaagagatc actcaattcg
    19201 tggcatgaaa tggtagagtc tggatgaaga ttaggtttgg gtgttgtctc atatagcgaa
    19261 ttaaaacaga ccctgatgcc gccaagatct cgaataacta atccaacagg ccgatgagac
    19321 tgaaaaatga ctaaagtgtt ttgttgttgg gcttccaacg caacgccata gcttaataat
    19381 aaatgaagct ggcattcgag aatacatcga ctgtattcaa taaaatatag ttcaggctcc
    19441 atgccacttg cttcaataat ttcaacgaat aaagcacgtt gactgactgg agaaatagca
    19501 tagagtgctg ctacaggtac taatgtttgt gacgcatcga tcaattccag tggattttca
    19561 cgtactatca tagccaaatg ctttttattt tgtggggaaa tggatgggtg tgtggtgtta
    19621 atccccgcta aatccctggc tagaaatagt ggcttttcaa aactttgata ctgagtcagt
    19681 aattgcctaa gccaactgga aagaggagac gaattgctta ctgaggcagg agatacagtg
    19741 cgtaaagcag aagtagtatg gattgctgta gctaatttta agtgtggacc tttgttatct
    19801 aaaggcatca tcgttcggaa tgacatggat ggtttggttt tttgaacagc ctctgttatt
    19861 aataattgct ttgaattgat taatacagag gccagtgttt gtaatttgtt attccattgc
    19921 cagggatgaa ctggaagagg caaatactga tcaggatcta attgttgttt ttggacagaa
    19981 taattccaca attgatattc tttagcaaaa tgttgggcaa acaacaaaga atagctagtc
    20041 gcatcaattg aagtaaacgc tacggagcga tgaattgcca gccagggaat atctacctgc
    20101 gcgttaaact caggggagta tcgaatcact tcttcaggaa taaaccccat ttttgcgcgg
    20161 aaattaggat gatacgggtg ccctatgcaa ccccattgct ctaaaaaagt cagaatttgt
    20221 tgtttattat gttgctctga taaccatgac cataaactgg agtggttttt cgcctgttgc
    20281 ttcagcgatt gttgccagca atgataataa gcgagggcta acgcctgatt gttgatgctt
    20341 tcatcgagtt ccttttttag aagaggccat cgatcaaatg ttttttccgg tttttgcttt
    20401 ttctgttgat gataaagtaa atcaagataa tcatgtatat gaaggctggt tatttccttg
    20461 tctattaatc cttcacgaag tgctgcatgt tgcaatcgat ctaaacattg ctggtgcgca
    20521 atcgatatga aatgttccat ttctgattgt gaaacaagaa gatctttttc aagtaataaa
    20581 ctatgtaatg agttatttat tttataagaa ttatttaaaa ctgctgccat gattatttcc
    20641 gtgaat
//
LOCUS       DACVWI010000038        20379 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.038, whole genome shotgun sequence.
ACCESSION   DACVWI010000038 DACVWI010000000
VERSION     DACVWI010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 20379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20379
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.038"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..191
                     /locus_tag="JBH85_05285"
     CDS             <1..191
                     /locus_tag="JBH85_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945611.1"
                     /translation="GECNILQLQRLEKAVFAAIPNSKALQQYKLITESNSKSRTGFQF
                     FSNQDKKQTLEEKSVFTP"
     gene            278..1270
                     /locus_tag="JBH85_05290"
     CDS             278..1270
                     /locus_tag="JBH85_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HAU0945612.1"
                     /translation="MRKMKNNNKSVITVDLNDPVKSLEYLEEAFQIGTFILKNSPVNF
                     KRLAKVLSDLDTFYNLDFKTKIEISGQISGGGATRGYFPLGVESGLVDVFEKKESYSF
                     GWPDNEIPDSDTPNLSLVAPNIYPDHGYINQDDVGGLIKDFANTAKELSKLIEIILFN
                     GKTALPIDESSDFQSLLRSFRYYKKTELDPPNTGANSLHTDWNLITLVYADADGYQYR
                     DNEGNFQNIIPETDDCLIVNFGDFLSAWTGGKIVSPWHQVVEAKKKDVRNSLVFFYYP
                     AASSSAVKNPIYNQGEPLSLFVDQSDPLNRLWDFSKIETMNEMYAEKWKQVSRK"
     gene            complement(1395..1844)
                     /locus_tag="JBH85_05295"
     CDS             complement(1395..1844)
                     /locus_tag="JBH85_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HAU0945613.1"
                     /translation="MSLLLTSPAFEHNDFIPDEFTCHGLDCPPPLAWENAPPNTKSFV
                     IIMDDPDASGGLWVHWVLFNIPASYNELDAAIDLPDSAISVKNSWGKTGYGGPCPPRG
                     THRYFFRLYALDTFLSLDEKATKKDVEYAMQGHILESSELICKYTKL"
     gene            2040..2927
                     /locus_tag="JBH85_05300"
     CDS             2040..2927
                     /locus_tag="JBH85_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0945614.1"
                     /translation="MSQLKSFKKVYILTSYQERQVKIPGFTIALKIWNPKNPNPVLCL
                     HGKMDNAASFDLLAPLLSDRQLVAVDYPGTGLSSHYPEGVVPHWKNDAFLMCHVIKAL
                     GWKRFDIIAHSLGSFLATVITIAQPKQVNKLVFLDILGPTVHIIENSMAYLPLNIESY
                     LISGKQPRTVFSSLDAAIKDRMNIGNISYQAAQALVQRGTKQDNEGWVWTFDPRLRCI
                     SATIPHEDEIRAMFRAIDVPVCLILANQGVSYPESVFKGRSQSIKNLTIHRVQGGHHV
                     HMDDPAPVAEIISQYLSSK"
     gene            3054..3572
                     /locus_tag="JBH85_05305"
     CDS             3054..3572
                     /locus_tag="JBH85_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1453 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945615.1"
                     /translation="MPRWFRRIVDEGERLLVEVTDELRDESEVHKAASQLHLRIEQVL
                     NANRARLEKPVIEAAEGFLHDLGVILEEDSMLRFPHAPVNQYLLAEKCTDIIYNYKPS
                     LESAPGIWNQIKAHINNFIEIIFGLENVLPTTQTMFAKDVSFTRCKRNLSRLKESLES
                     DAPDLLSVLVNC"
     gene            complement(3694..5079)
                     /locus_tag="JBH85_05310"
     CDS             complement(3694..5079)
                     /locus_tag="JBH85_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945616.1"
                     /translation="MKKNIIMFIVSCAMFMEAIDTTILNTAIPVMAHSLEVNPIDLKL
                     VLISYLLSLAIFIPISGWIADKYGVKKVFIAAIGVFTLSSLWCGFTQSLWELVLARII
                     QGLGGSLTVPVGRLIILRTCKRHELITKMSIVVMVASLGMLLGPLLGGIITDYFSWRW
                     IFWVNIPVGIIAMLLSHKLLPTILPRSVPPLDKSGFIMFGAGLAFLTLGLSLFSETKT
                     DIVYSASITLLSALLLIGYTKHSRNKKNPIIKVTLLNIRTFRIAVLGNLLTRLSFGGI
                     PFLLPLLFQIILEYSPQLSGMLLTPVALGVFLVKPLSFSILRRFGYKKLLLLNTVLVC
                     FSLWSFATINQSTSVIYIGFLTFLYGFFIALQYTGMNSLAYANIDDNDMSYATSIMST
                     VQQLSQSFGVAISALLVSLFTSQVSQHFVLTVKIFHLTFFALGMLTILSGLIFTSLKK
                     EDGKELIESPT"
     gene            complement(5108..6364)
                     /locus_tag="JBH85_05315"
     CDS             complement(5108..6364)
                     /locus_tag="JBH85_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HAU0945617.1"
                     /translation="MLKNITRALSLSLLISHNICANEASSIETISQPTTIQFLEKFGA
                     GFANLEHKNLGDRVQLYLPGHNSKTGIVKLKLPNGSKLSYGEIVMYGGDMFGNPAKPI
                     SNCSEKNRLACFQAQFDALGTLGNKQDKRCSNPLNQITHLDRFFANLAEEIEKSKQNG
                     TNDWDYYKQHDSAISKELNKLTCGGSIISGFIPFGNYIKLAEVNYDHFVPDSLVAYKT
                     GHRFALETALKAYEKKQQGLIDEAHKLLELAYAQNAFANHYLTDSFSAGHMRTPRRAI
                     GHDILLPSVLNLLIANLMHNEDNQHGLNVVNHEGISWLAYGDGYLYKPEAELQRVIIL
                     DAMQRSADSIHSTFMNGVIPEHYPEMDVFPDYSKIEQINDTAPLFKVENGVLLKRVNN
                     KDHYDHHWTKYWSGLVTLIEFQVNKI"
     gene            6485..7819
                     /gene="rlmD"
                     /locus_tag="JBH85_05320"
     CDS             6485..7819
                     /gene="rlmD"
                     /locus_tag="JBH85_05320"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HAU0945618.1"
                     /translation="MRKVKPKLNLTSQTARIVNLSHDGRGIARVNGKATFIQGALPGE
                     VVEFQYTRVKKDFDEGKLLSIVEPSTLRVEPKCPHYQMCGGCSLQHMSAEEQIRFKQS
                     HLLDLLSRYGHTEPQSVLSPLTSHHWNYRNKARLSTRFVEKKQSTMVGFRERNNPRFI
                     TEINQCPILNSKIDTDIVHLRKLIDTMEDKHCIAQIEVAAGDNEVALIFRNLSPLTEQ
                     DELKIREFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYELPDYQITFQFHPNDFTQ
                     VNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVER
                     AYMNAKSNHITNVDFYAANLDDVMEVRSLVNTSFSKVLIDPPRSGALEIVKQIDSIDP
                     ERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIALFQKG"
     gene            7825..10029
                     /gene="relA"
                     /locus_tag="JBH85_05325"
     CDS             7825..10029
                     /gene="relA"
                     /locus_tag="JBH85_05325"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HAU0945619.1"
                     /translation="MVRVKDTTPLMPDGSIDVEMWLHHLGSKGYLDNLELVRAACTLS
                     QLAGQDHATETGQTCLQQGLSMADLLADLEVDQETLAAAIIFENVHYADLSIDDVEEQ
                     LGHNIAKLVKGIEKMSAMNNFQALNKYPQNKNQIDNIRKMLLAMVDDVRVVLIKLAEC
                     LCILRTAGHLSETVRKQLATEAMEIYAPLANRLGIGAIKWEMEDLAFRHLHPEEYKAI
                     AKGLKAKRLERDSFVNRIVEQLEHQIRATGARHFAVYGRSKHIHSIYKKMKRKNVSLD
                     EIYDATAVRILVDTEAQCYEVLGMVHTLWKQIPAEFDDYIINPKSNGYQSLHTAVEGP
                     EGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGAVSQKESHERKIEWLRDVLAWHQEMAA
                     NKGVAENVTTEFLEDRVYVFTPDGDVLDLPHGVTPLDFAYHVHSNLGHRCRGAKVNGH
                     IVPLTYQLKTGDRVEVLTGKEIKPSRDWINPHLNYLKTARAKAKVLHWFKMQDYEDNV
                     RDGRELLEKELKSLGIKSDKLNEVITALNYKKADDLYASLGRGDIKIGQIVNRLAPPD
                     TSEQNLQKFVRQQQKPEVTGSDLRIEGVGNLLTFMARCCQPVPGDEIVGYITIGRGVS
                     VHRKDCPNIIHASEKQKRRFIQVNWGTATRENYVVDVLIKAFDRSELLKDVTSLLSNE
                     KAHVYALQTHSNKHENMAYITLTVEIDGLNSLSRLLTKLEQIPNVLEARRQL"
     gene            complement(10070..10435)
                     /locus_tag="JBH85_05330"
     CDS             complement(10070..10435)
                     /locus_tag="JBH85_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945620.1"
                     /translation="MNINLETAEQHAVQAYSDKKIQINSIIYESSLIVSKKEIITDFV
                     IKDIQDINDSYIDLLLRSKPELIIIGHLQTGKTLPVTLISQLSQKRIGIECMSIGAAC
                     RTYNVLLSEHRAVVAGFIF"
     gene            10494..11687
                     /locus_tag="JBH85_05335"
     CDS             10494..11687
                     /locus_tag="JBH85_05335"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HAU0945621.1"
                     /translation="MSQFPRIKRLPPYVFNTINQLKMEARARGEDIIDFGMGNPDQPT
                     PPHIVNKLIEVAQRPDTHRYSMSKGIPRLRRAMATWYLRHYDVHLDSETQILATIGSK
                     EGLAHLALAISGPGDTVLVPDPAYPIHTYGFIIAGANVKQIPLIDEVQFLAAVEDAIN
                     RTWPKPKALVLNFPANPSTHCVEYEFFEKVVDLAKRNNIWIIHDLAYADIVFDGYKAP
                     SILQVPGAIDIAIETYSMSKSYNMPGWRVGFACGNEELVAALTRIKSYLDYGTFTPIQ
                     VAAITALEGPDDCVLEIRNLYEKRRNLLCDGLNDIGWEVSKPKGTMFVWAPIPLNYRA
                     MGSLEFSKYLLKEAQVAVSPGIGFGQQGDGYVRFGLIENKDRIRQALRNLKALFKRDG
                     LLKAI"
     gene            11692..12501
                     /locus_tag="JBH85_05340"
     CDS             11692..12501
                     /locus_tag="JBH85_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945622.1"
                     /translation="MNVIINTESDCDSKEGKLLKSQGLAVLNLLACGGYDLVNPPIGN
                     LLKSSHSLEGDWVVLTPMHWQASHNDAVIVALDKDLRVTDEEVKYWFDLYSAYLAEEG
                     ASLYFYDKYTWLLRVDDKPPLNAKPIYQVLNKSLMPELSQLDETMYWQKFFTESQMFF
                     SSNARKSLINGVWAWGSGKLKTKKTTSICTDKHFLAVAQAYSSNVTLYDPSVNVSGFE
                     VVLLHDIDSLSELHQVEIKKIPAHWYWNNCALIKAKSHWFTRLWRSLTHAD"
     gene            12491..14230
                     /gene="recJ"
                     /locus_tag="JBH85_05345"
     CDS             12491..14230
                     /gene="recJ"
                     /locus_tag="JBH85_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HAU0945623.1"
                     /translation="MLIKQRQQPEFTVNLPNVPDVLKRIYVTRGISDESQLDKQLQTL
                     LPFHTLKGINEACLRLENALRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYL
                     VPNRFEFGYGLTPAIVEVASKWQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLP
                     AESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNM
                     ASFLDLVALGTVADVVGLDQNNRIMVNQGMMRIRQGQCREGIKALIEIAGRDYSRLRE
                     SDLGFAIAPRLNAAGRLDDMSLGIECLITTDPKMARNFCQQLDELNLERRQIESEMKE
                     QAMLALEKLSINDEENKHLPVALCLHDKTWHQGVIGILAGRMKEKYHRPVIAFASVSE
                     HELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVS
                     EVLKHLDLSQCEGEILTDGPLQSHELSLETAQLIQQAGPWGQAFAEPVFDNVFEILDQ
                     RIVGKNHLKMTLISSQGGEPLDAIAFNVDLKSWPNHRTKYIHVAYKLDINFYQGRTRL
                     QLLIQAMNPVQQG"
     gene            14309..15301
                     /gene="dusA"
                     /locus_tag="JBH85_05350"
     CDS             14309..15301
                     /gene="dusA"
                     /locus_tag="JBH85_05350"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HAU0945624.1"
                     /translation="MVNSIFSKLSIAPMIDWTNSPFRTLMRLLAPNALLYTEMQTTGA
                     VQNNPGRALYFNSVEHPIAIQLGGADKSALVKCAIIAEQKGFNEINLNLGCPSDKVQA
                     GRFGACLMREPEHVADCIRAIKEVVGIPVTAKTRIGIDNQDSYEFFRSFSLHLVEAGC
                     DKLIVHARKAWLNGLNPKQNRTIPPVNYDYVYELKKEIPHIFITINGNILTIEEINSH
                     LMYVDGVMLGRLACDNPYQIAEIHQALYPEFIKIKRSQLLMNYLDYWFDQSPANLSLS
                     ILVKPLFNLAFGLPGAKHWKKKLMNIIQEKNTSGFSELIQYLLNLEAINQVEFV"
     gene            15402..18092
                     /gene="secA"
                     /locus_tag="JBH85_05355"
     CDS             15402..18092
                     /gene="secA"
                     /locus_tag="JBH85_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095492.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HAU0945625.1"
                     /translation="MLSTLIKKMFGSRNERTLRRMEKSVMAINAFEPKMQALSNEELA
                     GKTQEFKERFNNGESLDELLAEAFATVREVSLRTLGLRHFDVQLIGGMVLHEGNIAEM
                     RTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMRPIYEFLGLTVGVIYPD
                     MSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDE
                     ARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTVDEKQKQAHLTDAGHLH
                     IEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEH
                     TGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTE
                     AYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRRQPVLVG
                     TVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGAVTIATNMAGRGTDI
                     VLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQ
                     LRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIE
                     NAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRSSIMAMTDTQEVVEMMREEVMDS
                     LVDTYIPPQSLEDQWDPQALSDVLSDEFKIKAPVPDWIDKDHSIQPEQIKEKILALAI
                     EHYDEKVRKVGRPVISQFEKSIILQTLDNHWREHLAAMDQLRQGIHLRGYAQKDPKQE
                     YKKEAFSLFTMMLDNLKYEVIRILSSVEIQTEEDAQVVEEQRRADQIRKMNLMHESLS
                     ENDEASETQTFRRQEKKIGRNDPCPCGSGKKYKACHGSLV"
     gene            18089..18493
                     /gene="mutT"
                     /locus_tag="JBH85_05360"
     CDS             18089..18493
                     /gene="mutT"
                     /locus_tag="JBH85_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011215601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HAU0945626.1"
                     /translation="MKVAVAIIIDEKQRILITQRPFHVAHGGFWEFPGGKLEPHESPE
                     DALVREIREELGIIVNEYRFLGYVDYDYPDKHIQLIIFMVTRFTGNPLCQEGQLNMKW
                     VKKEELNINDFPKANHAVFDLINIPELQYQAL"
     gene            18710..19540
                     /locus_tag="JBH85_05365"
     CDS             18710..19540
                     /locus_tag="JBH85_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAU0945627.1"
                     /translation="MDRKMITKQNGIYTLTLSLLLFSLQINAATDYQTYETVCGEPTD
                     MLSFLERGGIATNPCVVPPRSVLITSGYQYQQLIGEGVQHNFPAAAIQLGLPGYFEVD
                     LLLPNYINQTVDPRIGFSQTQLIVNHVLWFNNKWVITASGTFVFPSGSASFGSPNPGG
                     GVIGILSYNFNSQLNLTSNLGITTQSEPSYDGGQSYTSVNPDLILSWTKNKISLFAEI
                     YGQSKTAPDEGSGFSTDAGVLYQVKKNIVIDFEVDQRITGLLNGVERYYGGGITIQFN
                     "
     gene            complement(19585..20331)
                     /gene="zapD"
                     /locus_tag="JBH85_05370"
     CDS             complement(19585..20331)
                     /gene="zapD"
                     /locus_tag="JBH85_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HAU0945628.1"
                     /translation="MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFA
                     LKNIIEIVEIVEKPELKSRFIKELIRIEHVLKKANLLNHSELFDDLETQIHVLNHVPG
                     RFSNKIHDDEFLKTLRQIHHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLKDL
                     EDTVKIYLSLLRGVTQYTPIRANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGH
                     HSLTIRLYELVTGQEIRDKTIEMEIAFCQI"
BASE COUNT         6446 a         3452 c         4246 g         6235 t
ORIGIN      
        1 aaggggaatg taatatttta cagcttcaaa gacttgaaaa agcggtattt gctgcgatac
       61 ctaatagcaa agctcttcaa caatataaat taattacaga gtcaaactca aaatcgagga
      121 ccggttttca atttttctca aatcaagata agaagcaaac actagaggaa aaatctgtct
      181 tcactcctta aggtagtatt gtaaattaaa gtatggttga tattgatagt tacattagat
      241 agttattcat ggtttaaaaa gttcttaaca ggaaataatg agaaagatga aaaacaataa
      301 taagtctgta attactgttg atttaaatga tccggtgaag agtctggaat atcttgaaga
      361 ggccttccag attggtactt ttattctaaa aaattcgccg gtaaatttca aaagattagc
      421 gaaggtttta tctgatctgg acacatttta caatttggat tttaaaacca aaatcgaaat
      481 ttccggacaa atttccggcg gtggtgcaac cagaggctat tttccactgg gtgtagaaag
      541 tggtcttgtt gatgtatttg aaaaaaagga atcttactcg tttgggtggc ccgataatga
      601 aattccagat tcagataccc caaatttatc attagttgcc ccaaatatct atcctgatca
      661 tggttatatt aatcaagatg atgtcggggg attgataaaa gactttgcca ataccgcaaa
      721 agaattgtcc aagttaattg aaatcatcct tttcaatgga aaaactgctt taccaatcga
      781 tgaatcttca gattttcaat cgttgttacg aagcttcagg tattataaaa agactgagct
      841 tgaccctcct aacacaggag caaattcgct tcacacagat tggaacctga ttacgttggt
      901 atatgcagat gctgatgggt accaatatag agataatgag ggcaattttc aaaacataat
      961 cccagaaaca gatgattgcc ttatagttaa ttttggagat tttttatcgg cttggactgg
     1021 tggaaaaatt gttagtcctt ggcatcaggt agttgaggca aagaaaaaag atgtaagaaa
     1081 ctctctggtc ttcttctatt atccagcggc ctctagctca gctgttaaaa atcctatata
     1141 taatcaaggt gagcctctta gtttgttcgt tgatcagtct gatcctttaa ataggttatg
     1201 ggacttttct aaaatagaaa ccatgaatga aatgtatgca gaaaaatgga aacaagtgag
     1261 tagaaaatag gattcagttt aagtcattaa gcaatgatta tcataaaacg tattttttgc
     1321 tggtacaatt ttttctaaaa aaatatggat atgctgttat tagtgttatt gttctctgct
     1381 gatctcaaca tgtattagag tttagtgtat ttacatatga gctcacttga ctcaagaata
     1441 tgaccttgca tagcatattc aacatctttc tttgttgctt tttcatccag agataaaaaa
     1501 gtatccaaag catataacct aaaaaaatat cgatgtgttc ctctaggggg gcatggtccg
     1561 ccgtaacctg ttttgcccca actgttctta acgcttatcg cggaatcggg taaatctata
     1621 gcagcatcca gttcattata gcttgccggt atgttgaata aaacccaatg aacccataat
     1681 cctcctgacg catctggatc atccataatt atgacaaagg atttggtatt tggcggagcg
     1741 ttttcccaag caagcggtgg gggacaatcc aatccatggc aagtaaattc atcaggaata
     1801 aaatcgttat gctcaaatgc cgggcttgtt agtaataaac tcaaaatact ctccttatct
     1861 ctttcggata cagcattgtg aatcttaact ttttgttatt tttccctact acccttaaat
     1921 tatattagca tggtaatttt ggatctgcca ttcatcaaag cgataaagaa attgaaaata
     1981 ttgttctctt cattgactct tactcctcct actcattagt atataaatct cttaaatatt
     2041 tgtctcaact aaagagtttt aagaaggtat atatcttgac atcttaccaa gaaagacaag
     2101 ttaaaatccc gggttttact attgctctta aaatttggaa tcccaaaaat cctaatccag
     2161 tactgtgttt gcatggcaaa atggataacg cagcaagttt tgatttgctg gcgcctttgt
     2221 tatcagacag gcaattagtt gcagtagatt atcctggaac agggttgtca agccattatc
     2281 ctgaaggtgt tgtccctcat tggaaaaatg atgcttttct tatgtgccat gttatcaagg
     2341 cattaggatg gaagcgcttt gatattattg cccactcatt aggttctttc ctggcaactg
     2401 ttataactat tgcccaacct aaacaagtta ataaattggt atttttagat attttaggac
     2461 caacggttca tattattgag aacagtatgg cttatttacc cctaaatatt gaaagctatt
     2521 taatatccgg taaacaacca aggactgtat ttagcagtct ggatgctgca atcaaggacc
     2581 gcatgaatat tggtaatata agctatcaag cagctcaagc cctggttcaa aggggtacaa
     2641 aacaagataa cgagggctgg gtttggacat ttgatccccg gttacgctgc attagtgcaa
     2701 ctatacctca tgaagatgaa attcgagcca tgtttcgtgc tatagatgtg ccagtttgcc
     2761 taattctcgc taaccaaggt gtatcttatc ccgaatctgt ttttaaagga cgctcccaat
     2821 caataaaaaa tttgaccatc catagggtac aagggggaca tcatgtgcat atggatgatc
     2881 cagcccctgt tgcagaaatt atttctcaat atttaagctc taaataaaac tggtttatta
     2941 aagaataaca agtatagatg gactcttgct ctaaatgttg atgcagggat gattgataat
     3001 gaatgatttc atgatgtata attggccaat ctatttaata gtggagcatt aatatgccta
     3061 gatggtttag aagaatagta gatgagggag aaaggctgct tgtcgaggta actgatgaat
     3121 tgcgtgatga aagcgaagtg cataaagcag caagtcagtt acatttacgt atcgaacaag
     3181 ttttaaatgc caatcgagct agacttgaaa aaccggttat tgaagcagct gaaggttttc
     3241 ttcatgatct aggggttatc ctggaagaag attccatgtt gagatttcct catgcaccag
     3301 taaaccaata tctactcgca gagaaatgta ccgatattat ttacaattac aaaccgtcct
     3361 tagagtcagc accagggatt tggaatcaga tcaaagctca tattaataac tttattgaaa
     3421 taattttcgg tttagagaat gttttaccaa cgacgcagac tatgtttgca aaagatgtaa
     3481 gtttcaccag atgcaaaaga aacctttcca gactaaagga atcacttgaa agtgatgcgc
     3541 ctgatttgtt gtctgtgttg gttaattgtt aagtcgtcat tgaatttaat taatttactt
     3601 acgcattaat ttttcttgaa tgaccagata ctgcatcgat atgcattgtc ttggtcatcc
     3661 tgctgtctgc ttagtgatgc aactgatgcg aatctaggtg ggtgactcaa tcagttcttt
     3721 tccatcctct ttttttaagc tggtaaatat taatcctgaa agaatcgtaa gcatccctaa
     3781 agcaaaaaag gttagatgaa aaatcttgac tgttaaaaca aaatgttgcg aaacctgaga
     3841 agtgaataaa ctgaccagta gggcagaaat tgctactcca aaactttggg ataattgttg
     3901 aactgtgctc ataatgcttg tcgcataact catatcatta tcgtcaatat tcgcatacgc
     3961 aagggaattc atccctgtgt attgcagagc aatgaaaaat ccataaagaa atgttaaaaa
     4021 accaatgtag atgacagaag tgctttgatt tattgtggca aaggaccaga gagaaaaaca
     4081 gactaaaacg gtatttaaaa ggagtaattt tttataaccg aatcttcgta agatggagaa
     4141 agataatggt ttaaccagga atacgcctaa tgctactggt gtaagtaaca ttcctgataa
     4201 ctggggagaa tattctaaaa taatttggaa gagtaaaggt aataaaaagg gaattccacc
     4261 aaaacttaaa cgagttaata aatttccaag tacggcaata cgaaatgttc ttatatttaa
     4321 caaagtaact tttattatag gatttttttt gttacgagaa tgtttggtat atccaattaa
     4381 tagcaaggcg gataaaagag taattgaagc ggagtagaca atatccgttt tcgtctcact
     4441 aaacaaagac aaacctaaag tcaagaatgc aaggcctgct ccgaacataa taaatcctga
     4501 tttatccaaa ggcggaaccg atctgggcag gatagttgga agcagtttgt gagataaaag
     4561 catggcgatt atgccaacag ggatattaac ccaaaatatc caccgccatg agaaataatc
     4621 agtaatgata ccgcccagta aggggccaag tagcatacct agcgatgcaa ccatgacgac
     4681 aatactcatt tttgttatta attcgtgacg cttacaagtt ctcagtataa ttaaacgtcc
     4741 aacaggcacg gtcagtgagc cgcctaaacc ctgtataatt ctggctaata ccaattccca
     4801 aagactttga gtgaatccgc accataagga acttagagta aagacaccaa tagctgctat
     4861 aaatactttt tttacaccat atttatcagc aatccatcca cttatgggaa taaagattgc
     4921 caaacttaaa agatagctaa tgagcacgag tttgagatca attggattga cttctaaact
     4981 atgtgccatc accgggattg ccgtgttgag aatagttgta tcaatagcct ccataaacat
     5041 ggcgcatgat acaatgaaca taataatatt tttcttcata atgcctgttt tatggaagtt
     5101 agaacgttta aattttatta acctgaaact ctattaaagt cacaagcccg ctccagtatt
     5161 ttgtccaatg atgatcatag tgatccttat tattaactcg tttaagcaaa acgccgtttt
     5221 caactttaaa taatggagct gtatcattta tctgttcaat ttttgagtaa tcgggaaaca
     5281 catccatctc tgggtagtgt tcagggataa ctccattcat aaaagtacta tggatactgt
     5341 ctgcagaacg ttgcatggcg tctaagatga tcactctttg taattcggct tctggtttgt
     5401 ataaatagcc atctccatag gcaagccaac ttattccttc atgattcact acatttaacc
     5461 catgttgatt atcttcatta tgcatcaaat tggcgataag aagatttaaa acagaaggca
     5521 gtaatatatc atgtcctatg gctcgtcttg gagtgcgcat gtgtcctgca gaaaaagaat
     5581 cagttaagta atgatttgca aaggcgtttt gagcataggc taattcaagg agcttgtgag
     5641 cttcatcgat aagtccctgc tgctttttct cataagcttt taatgctgtt tccaaagcaa
     5701 atctatggcc tgttttatag gctacaagtg aatcaggaac aaagtgatca tagttgactt
     5761 cagctaattt aatataattg ccaaagggta taaaaccact gattatactt ccaccacaag
     5821 tcagtttgtt taattccttg ctaatagccg agtcgtgctg cttataataa tcccaatcgt
     5881 ttgttccgtt ttgttttgat ttttcgatct cttcagccaa attggcaaaa aaccgatcaa
     5941 gatgggttat ctgattaaga gggttagagc aacgtttgtc ttgcttgtta cctaaagtcc
     6001 ccagagcgtc aaactgcgcc tggaaacaag ctaatctgtt tttctcagag caattggata
     6061 tgggttttgc tggatttcca aacatatcac caccgtacat cacgatctcg ccataactta
     6121 gtttactccc attgggcaat ttcagtttta caataccagt tttgctgtta tggcctggca
     6181 aataaagttg aactctatcc cccagatttt tatgttccag attggcaaag cctgcaccaa
     6241 atttttctaa aaattgaatg gtcgttggtt gagatattgt ctcgatagaa gatgcttcat
     6301 tggcgcagat gttatggctt attaacaatg acaaagacaa agctcgtgtg atattcttca
     6361 acattatgca ttcccttgat tatttggccc tttatttggg cattttttgt tttttatatc
     6421 catacaacat tctaaaaatg tagcatgaga attttgtaat tgataattat ttgagaatca
     6481 tttcatgaga aaagttaagc caaaattgaa tttaacctca caaaccgctc ggatcgtaaa
     6541 tttaagccat gatgggaggg ggatagcacg agttaatggc aaagcaactt ttattcaggg
     6601 agcattacct ggtgaggtgg ttgaatttca gtatacacgg gtaaaaaagg attttgatga
     6661 aggtaaatta ttatcaattg ttgagccctc tactctcagg gttgaaccaa aatgccctca
     6721 ttatcaaatg tgtgggggct gttctttgca acatatgagt gccgaggaac aaattcgttt
     6781 caaacaatcc catcttttgg atttactatc ccggtatggc catactgaac ctcaatcagt
     6841 gttgtcgcct ttaacaagcc atcattggaa ttatagaaat aaagcgcgct taagtactcg
     6901 ctttgtagaa aagaaacaaa gcaccatggt tggatttaga gagaggaata atccaaggtt
     6961 cattacagaa ataaatcaat gtcctattct taattcaaaa atagatactg atattgtcca
     7021 tttgagaaaa ttaatcgata cgatggaaga taagcactgt atcgcacaaa ttgaagtggc
     7081 tgcaggtgat aatgaagtgg cgctgatttt ccgcaatcta tctccattaa cagagcaaga
     7141 tgagttgaaa atcagggaat ttgcgcaaca attccaatac aaggtattcc tgcagccagg
     7201 tggacttgat tcggtttttt gtttttatcc ttcagatgct catgcttatt tgagttatga
     7261 gctgcctgat tatcaaataa cttttcaatt tcatcccaac gattttactc aggtaaacgc
     7321 cgagttaaac agaaagatgg taacgcaggc aattcagtta atggaattaa aaaattctga
     7381 tatcgtgcta gacttatttt gtggactggg taatttttcg cttcccatgg ctaaacattg
     7441 ctctcgagtt atcggtgtcg aaggcaataa gaacatggtt gaaagagcct atatgaatgc
     7501 caagtctaat catattacca atgtggattt ttatgccgct aatcttgatg atgtgatgga
     7561 agttaggagt ctggttaata cgtcttttag caaggtttta atcgatcctc cccggtctgg
     7621 tgcgcttgaa attgtaaaac aaattgattc aattgatccc gagcgtatag tatatgtatc
     7681 ttgtaacccg ataacattag ctcgagatac agatatattg gttaatcaaa aaggttacgt
     7741 tttgataaca gctggggtaa tggatatgtt tcctcataca gcgcatgtcg agtctattgc
     7801 cttgtttcaa aaaggataat atgtatggta agagtaaaag atacgactcc gttgatgcca
     7861 gatggcagta tcgacgtaga gatgtggtta catcatcttg gttcaaaagg atacttggat
     7921 aatctcgaac tcgtaagagc tgcctgtact ttaagtcaat tggctggtca ggatcatgcc
     7981 actgaaacag ggcaaacttg tttacaacaa gggctatcaa tggctgattt acttgctgac
     8041 ctggaagtag atcaggaaac tctggctgcc gctattattt ttgaaaatgt tcattatgcg
     8101 gatttatcta ttgacgatgt tgaagagcaa ttggggcaca atatcgctaa attggtcaaa
     8161 ggcatagaaa aaatgagtgc catgaacaat ttccaggctt taaataaata cccgcaaaac
     8221 aaaaatcaaa ttgacaatat tcgtaaaatg ctccttgcga tggttgatga tgtgcgagtt
     8281 gttttaatca agctggcgga gtgtttatgt attttaagaa cagcagggca tctgtctgaa
     8341 acagtacgca aacagctggc aaccgaagcc atggaaattt atgcgccttt agctaaccgc
     8401 ttgggaatag gggcaatcaa gtgggaaatg gaagatttgg ctttccggca tttgcatcca
     8461 gaggaataca aggcgattgc caagggcttg aaggctaaac gattggaaag ggacagcttt
     8521 gtcaatcgca ttgtcgaaca gcttgaacat cagattcgag caacaggagc tcgccacttt
     8581 gccgtttatg gtcgctcaaa acatatccat agtatttata aaaagatgaa gcgcaaaaat
     8641 gtatcattag acgagatata tgatgcaaca gcggttcgta ttctggtaga tactgaagca
     8701 caatgttacg aagtgttggg tatggttcat actttgtgga agcaaattcc agcagagttt
     8761 gatgattaca tcatcaatcc aaaatccaat ggctatcagt ctcttcatac cgcggtagag
     8821 ggtccggaag gaagagtttt tgaagtacaa atcagaactt ttcatatgca tgatttagca
     8881 gaaatgggtg tggcagccca ttggaaatat aaagagggcg cggtatcaca aaaagagagc
     8941 catgagcgta aaatagaatg gttaagagac gttttggcat ggcaccagga aatggcggct
     9001 aataaaggtg tcgcagaaaa cgttacgacc gagtttcttg aagacagagt gtatgtattt
     9061 actcccgatg gcgatgtgtt ggatttaccc catggggtga ctcctttgga ttttgcttat
     9121 catgtgcata gtaatttggg acatcgttgc cgaggtgcca aggttaatgg tcatattgtc
     9181 ccattgactt atcaattgaa aacaggagac agggttgaag tactgactgg aaaagaaatc
     9241 aaaccatcaa gggattggat taatcctcat ctgaattatt taaagaccgc aagagccaag
     9301 gctaaagtat tgcattggtt taaaatgcaa gattatgaag ataatgtgag agatggtcgt
     9361 gagttattgg agaaggaatt aaaatcttta ggtattaaat cggataaact caatgaagtg
     9421 attacggcat tgaattataa aaaggcggat gatctttatg ccagcttggg acgaggtgat
     9481 attaaaatag gtcagattgt taatcgattg gcacctccag atacttcaga acaaaattta
     9541 cagaagtttg taagacaaca acaaaaacca gaggtcacag ggagtgatct tcgtattgag
     9601 ggagttggga acttattgac atttatggcg agatgctgcc aacctgttcc cggtgatgaa
     9661 atagtaggat acatcacgat tggaaggggg gtttccgttc atcgaaaaga ttgccctaat
     9721 attatacatg ccagtgaaaa gcaaaagcga cggtttattc aggtgaattg gggtacagca
     9781 acacgggaaa attatgttgt tgatgtgctg attaaggcct ttgatcgttc cgagttattg
     9841 aaggatgtta cttcgctgct ttcaaatgaa aaagcccatg tttatgcttt acagacccat
     9901 agcaataaac atgaaaatat ggcttatatc actttaactg ttgagatcga tggtttaaac
     9961 agtttgtcgc gcttattaac taagttggag caaattccta acgtgctgga agcaagaagg
    10021 caattatagc tttggtatat ttagccagag ccttctcaaa aaattgatat tagaagataa
    10081 accctgcaac aactgctctg tgttcgctca ataagacgtt ataagttctg caggcggcgc
    10141 ctatggacat gcattcgata ccaattcttt tttgcgataa ttgactgatt agagtgacag
    10201 gcagcgtttt gcctgtttgc agatgaccaa taataattaa ttcgggtttg cttcttaata
    10261 ataaatcaat atatgaatca ttaatgtcct ggatgtcttt aattacaaaa tcagtaatga
    10321 tttctttctt agaaacaatt aaactacttt cataaattat ggaattaatc tgaatctttt
    10381 tatcgctgta agcttgcact gcatgttgct ctgcggtttc tagattgata ttcatgattt
    10441 taaaaagttc attagtttat aatggctaac agtatatcac agaggtcaat attatgagtc
    10501 aatttccacg cattaaacgc ttaccccctt atgtatttaa tacaataaac cagcttaaga
    10561 tggaagcgcg ggcgcgagga gaggacatta tagactttgg catggggaat cctgatcaac
    10621 caaccccacc tcatattgtt aataagctta tagaggttgc tcaaaggcct gatacgcatc
    10681 gatattcaat gtcgaaagga atcccgagat tgcgtcgagc gatggcaacc tggtatcttc
    10741 gacattatga tgttcatctg gacagtgaaa cacaaatatt agctacaata ggatctaaag
    10801 agggacttgc acatttggct ttggcaattt caggtccagg tgatacggtg cttgttcctg
    10861 accctgctta tcctatccat acctacggat ttatcattgc tggtgctaat gtaaagcaaa
    10921 ttcctttaat cgatgaagtt caatttttgg ctgcagtaga agatgctatt aacagaacct
    10981 ggccaaaacc caaagccttg gttttgaatt ttccggcaaa tccaagtact cactgtgtcg
    11041 aatatgagtt ttttgaaaag gtggttgatc ttgctaagcg taataacatt tggattattc
    11101 atgatttggc ctacgcagat atagtttttg atgggtataa agccccttcg attttacaag
    11161 ttcctggtgc catagacatt gcaattgaaa cttactcaat gtccaaatct tataatatgc
    11221 ctggctggcg tgttgggttt gcttgtggta atgaagagtt agtagctgcc ttaacacgta
    11281 taaaatccta cttggattac ggtactttta ctcctatcca ggttgctgca attacagcac
    11341 tggaaggccc tgatgattgt gtgttggaaa taagaaatct ttatgaaaaa cgacgcaatc
    11401 ttttgtgtga tggactgaat gacattggtt gggaagtgag caaacctaaa gggaccatgt
    11461 ttgtttgggc acctattcct ctcaattacc gcgctatggg gtctcttgag ttcagtaaat
    11521 atttattgaa agaagcacaa gttgctgttt cacctggtat aggttttgga cagcaagggg
    11581 atggttatgt ccgattcggc ttaattgaaa ataaagacag aataagacag gccttgagaa
    11641 atttaaaagc tctgtttaaa agagatggtt tactaaaggc tatttagtgc aatgaatgtc
    11701 attataaaca cagagagcga ctgtgatagc aaagagggca aattattaaa atcgcaaggt
    11761 ttggcagtac ttaatttatt agcatgcggc ggttatgacc ttgtaaatcc cccaataggt
    11821 aacttattga aatcgagcca tagtcttgag ggagattggg tggttttaac tcctatgcat
    11881 tggcaagcat cacataatga tgctgtcatt gtcgctcttg ataaggattt acgagtaaca
    11941 gatgaagagg tgaaatattg gttcgatttg tattctgcct atttagcgga agaaggagcg
    12001 tccctttatt tttatgacaa atacacttgg ttattgcgag ttgatgataa gccacctctt
    12061 aatgccaaac caatttatca ggtactaaac aagtctttga tgccagaatt atcgcaactg
    12121 gatgagacta tgtactggca aaaatttttt actgaaagtc aaatgttttt ctcttccaat
    12181 gctcggaaat cattaattaa tggtgtttgg gcatggggta gtgggaaatt gaaaactaaa
    12241 aaaacaacat caatttgcac agacaagcat tttctggcag tagctcaagc atattcttca
    12301 aatgtgactt tatatgaccc gtcagtgaac gtgagcgggt ttgaggttgt tctattacat
    12361 gacattgatt ctttaagcga attacatcaa gttgaaataa aaaaaatacc ggcacattgg
    12421 tactggaaca attgtgcttt aattaaagcc aaatctcatt ggtttactcg attatggaga
    12481 agtctgacgc atgctgatta aacaacgaca acagcctgag tttactgtta atttacctaa
    12541 tgtacctgat gtattaaaac gtatttatgt aacacgaggc attagtgacg aatctcaact
    12601 tgataaacaa ttacaaacat tgcttccttt tcacacttta aaaggcatta atgaagcttg
    12661 tctaagatta gagaatgctt tgcgttcaga gcaacgtatt cttattatcg gtgattttga
    12721 tgccgatggg gcaacttcta cggcattagc cattactgcc ttgcgtgcta tgggtgcaag
    12781 gtttgttgag tacttggtac ctaatcgatt tgaatttggt tatggtctta ctcctgctat
    12841 tgttgaagtg gcaagcaaat ggcaacctca tttaattatc actgttgata atggtatagc
    12901 cagttttgaa ggagtagatg cggctaataa aatgggaata gatgtattaa ttactgatca
    12961 tcatttacca gcagaatcac tacctgatgc ttgtgcaatt gttaatccca atcagcctgg
    13021 ttgtttattt ccaagcaagt caattgcggg agttggcgtt attttttacg ttatgctggc
    13081 attgcgcagg catctttcca attgtaactg gtttaatgaa atcaacatgc ctgagcctaa
    13141 tatggcgagt tttctggatt tggttgcatt agggactgta gccgacgttg tggggcttga
    13201 ccaaaataac aggatcatgg ttaatcaagg catgatgcgt attcgtcaag gacaatgcag
    13261 agagggaata aaagctttga ttgaaattgc tggtagggat tactccaggc taagagagtc
    13321 tgaccttggt tttgccatag cgccaagatt aaacgctgca ggccgtttgg atgatatgtc
    13381 gcttggtatt gaatgtttga ttacgacgga tccaaaaatg gcaagaaatt tctgtcaaca
    13441 gttggatgag ttgaatctgg aaagaaggca aatagaatct gaaatgaaag agcaagccat
    13501 gcttgcttta gagaaattgt caattaacga tgaagagaat aagcacttac cggttgcctt
    13561 gtgccttcat gataaaacct ggcatcaagg agtgatagga atcttggcag gaaggatgaa
    13621 ggaaaaatat catcgtcctg tcattgcatt tgcttctgtc agtgagcatg agttaaaggg
    13681 ctcagcacgt tctgtccccg atttaaacat tagagatgta ttggctgctg ttgataaaga
    13741 caatccagga ctgattctta aatttggagg acatgctatg gctgctggct taagtattag
    13801 ccccgaatta ttgaatgatt ttcgctcagc attcgtgtca gaggttctga aacatcttga
    13861 cttatcacag tgcgaaggag aaatactgac ggatggacca ttgcaatccc atgaactgag
    13921 tttggaaaca gcacaattaa tacaacaagc tggtccttgg ggccaagcgt ttgcagaacc
    13981 agtatttgat aatgtatttg aaattctgga tcaacgaatt gtcggtaaaa atcatttaaa
    14041 aatgacatta atttcctcac aaggagggga gccactggat gccattgctt ttaatgtgga
    14101 tttaaaatcc tggcctaatc ataggactaa gtacattcat gtcgcctata aactggatat
    14161 caatttttat cagggaagaa caaggctcca attgctcatc caggcaatga atcctgttca
    14221 gcaaggataa actcttaaat tgatgctatt tttgtgtatt tctcaaacaa caatgtataa
    14281 tgttatattt gctttaaatt gattaaacgt ggttaatagt attttttcca aattatctat
    14341 agcgccaatg attgattgga ctaacagccc atttcgtact ctgatgaggt tattagctcc
    14401 taacgccctt ttgtatactg aaatgcaaac aacaggggct gtgcaaaata atcctggcag
    14461 agctttatat tttaattctg ttgaacatcc tatcgcgatt caattgggtg gggcagataa
    14521 atccgcattg gttaagtgcg ccattattgc tgaacaaaaa gggtttaatg aaattaattt
    14581 gaatttggga tgtcctagtg acaaagtaca ggcaggacga tttggagcct gcttgatgag
    14641 ggagccagaa cacgttgctg attgtattcg tgcaataaaa gaggtagtag gaataccagt
    14701 tacagcgaaa acgagaatcg gtatcgataa ccaggacagt tatgaatttt tcagatcttt
    14761 ttctcttcac ttggttgaag caggctgtga caaactgatt gttcatgctc gcaaggcttg
    14821 gttaaatggg ttaaatccaa agcaaaatag aacgattcct cccgtaaatt atgattatgt
    14881 atatgagcta aaaaaggaaa ttcctcatat ctttattaca atcaatggga acatattaac
    14941 tattgaagaa ataaacagtc atttaatgta tgtcgatgga gtaatgttag gacggcttgc
    15001 ttgcgataac ccttatcaaa ttgctgaaat tcatcaagcc ttatacccag aattcatcaa
    15061 aattaaacgt agccagttgt taatgaatta tctggattat tggtttgatc aatctccagc
    15121 caatctctcg ttaagcattt tggttaagcc actttttaat ttagcttttg gattaccggg
    15181 agccaaacat tggaaaaaga aattgatgaa tattattcag gagaaaaata cttccggttt
    15241 tagtgagtta atccagtact tattaaattt ggaagcaata aatcaagtcg agtttgtata
    15301 agaaataata gagcagatgt caacatttcg tggaatttta tcaagatttc tagtacatta
    15361 acgagtttat taattggaac atcctgaggg ttattgaggc catgctgagt acgttaatta
    15421 agaaaatgtt tggaagccga aatgaacgga cattacggcg aatggaaaag tcggtaatgg
    15481 ctattaatgc gtttgagccg aaaatgcagg ctttatcaaa cgaagagctg gctggaaaaa
    15541 ctcaagaatt taaagaacgt ttcaataatg gtgaaagtct cgatgagtta cttgcggaag
    15601 cttttgctac ggttagagaa gtatcattgc gcactctcgg tcttagacat tttgacgtac
    15661 aattaatagg cgggatggta ttgcatgagg gaaatattgc tgaaatgcgt accggggaag
    15721 gtaaaacatt ggttgcaacc ttgccagcct atctcaatgc cattagcgga cgtggcgtac
    15781 atatagtcac tgttaatgat tatcttgcga aaagagatag ccaatggatg aggcccatat
    15841 atgaattttt agggcttaca gttggcgtta tctatcctga tatgtcgcac aaggaaaaac
    15901 aggaagctta caaagcagat attgtttatg gaactaacaa cgaatacggt tttgactatt
    15961 tacgtgacaa tatggctttt agtctgactg ataaggtaca aagagagctt aattttgcta
    16021 ttgtcgacga agtagattcc attttgatcg atgaagcgag aactccattg atcatatctg
    16081 gcgcggcaga agatagttca gagctgtata tcaaaattaa ttctttgatc ccacagttaa
    16141 aaaaacaaga agaagagggt gacgaaggcg attatactgt agatgaaaag caaaaacagg
    16201 ctcatctgac tgatgcaggt catctgcata tagaagaact gctgaccaaa gccaaattat
    16261 tagatcctgg tgagagtctt tatcatgcca gcaatatcat gttgatgcat catgtgaatg
    16321 cggcactcaa ggctcatgca atgtttcaca gagatattga ttatattgtc aaagacaatc
    16381 aagtggtgat agtggatgag cataccggcc gtaccatgcc tggaagacgt tggtcagaag
    16441 gcttgcacca ggcagtcgaa gccaaggaag gagtcccaat tcaaaatgaa aatcagactt
    16501 tggcttctat aacttttcag aattttttcc gcatgtataa taaattgtca ggaatgacgg
    16561 gtactgctga cacagaagcc tatgagttcc agcaaatata taatcttgaa gtggttgtaa
    16621 tacctaccaa taggtcaatg attagaaaag acgaggctga tttggtttat ctaacacagg
    16681 cagataaatt ccaggcgata atcgaagatg tacgagaatg tggtgttcgt agacaacctg
    16741 tcttagttgg aacagtttca atcgaagctt ctgagttttt aagtcaactc ttaaaaaagg
    16801 agaacataaa gcatcaggta ttgaatgcaa aattccatga aaaagaagcc caaattattg
    16861 ctgaagccgg gcgccctggc gctgtaacca ttgcgactaa catggctgga cgaggaacag
    16921 atattgtttt aggtggtagc ttggcagctg atctggctaa tttgccagct gatgcgagtg
    16981 agcaagaaaa agaagcggtt aaaaaagaat ggcaaaaacg tcatgatgag gtgattgcag
    17041 caggcggact tcgaattatt ggctctgagc gtcacgagtc aagacgtatc gataatcaat
    17101 taagagggcg agctggtcgc caaggtgatc ccggaagtag ccgtttttat ttgtcacttg
    17161 aagacaattt aatgagaata tttgcttctg agcgcgtggc ttctatgatg cgtcgtttag
    17221 gaatgcagcc aggtgagccg attgagcata gtttggttac cagagcaatt gaaaatgctc
    17281 aacgcaaact ggaagggcat cattttgacg taagaaagca attgttggat tatgataatg
    17341 tagcgaatga tcagcggcag gtcatttata ctcagcgttc ctctattatg gcaatgacgg
    17401 atacacagga agttgttgaa atgatgagag aagaggtaat ggatagtctg gttgatactt
    17461 atatcccccc tcaaagtctg gaggatcagt gggatccaca ggctttgtct gatgttttgt
    17521 cagatgaatt taaaatcaaa gcccctgtgc ctgactggat tgataaagat catagtatac
    17581 aacctgagca aattaaagaa aaaattcttg ctttagctat agagcattat gatgaaaaag
    17641 taagaaaagt tggtaggcca gtcatttcac aatttgaaaa atcaattatt ttacaaactt
    17701 tagataatca ttggcgtgaa cacttggctg caatggatca attacgtcag ggaattcatt
    17761 taaggggtta tgctcagaag gatccaaagc aggaatacaa aaaagaagct tttagtttgt
    17821 ttacaatgat gctggataat cttaagtatg aggtgatcag gatactatca tccgttgaaa
    17881 ttcaaacgga ggaggatgct caagttgttg aagagcaacg tagagcggat cagattagaa
    17941 aaatgaatct catgcatgaa agtttatcag agaatgatga ggcaagtgaa acgcaaactt
    18001 ttagacgaca agaaaagaaa attggccgta atgatccttg cccctgtggc tcaggtaaaa
    18061 aatataaagc ctgtcatgga agcctcgtgt gaaagtagca gttgctatca ttatcgatga
    18121 aaaacaacgt atactaatta cccaacgtcc ttttcatgtc gcacatggag gattttggga
    18181 gtttcctgga ggaaaactgg agcctcatga atctcctgag gatgctttgg ttcgagagat
    18241 tagggaggag ttaggcataa ttgtaaatga atatcgtttt ctggggtatg tcgattatga
    18301 ttatccagat aaacacatac aattaattat ttttatggta actcgtttta caggcaaccc
    18361 tttatgtcag gaagggcagc tcaatatgaa gtgggtaaaa aaagaggaat taaatattaa
    18421 tgatttccct aaagcaaatc atgcggtttt cgatttaatt aatatccctg aacttcaata
    18481 tcaagcttta taaatgtgcg aatagtctaa agtttgaagc taggacatca tatttaattg
    18541 ctaagcacaa aatacactcc ttgtttagat gatgttatat cagatcagtt gtagagatca
    18601 aatcaatcag aatggtcact gcaaggtatg ttcacataga ctagagattg caaagatagt
    18661 agccttttgt aaatgattag attttgtatt tcaattaatt gttaatcaat tggacagaaa
    18721 aatgattact aagcaaaatg gaatttatac acttaccctt tctttattac tattctcact
    18781 tcaaatcaac gctgctacgg attatcaaac atatgaaaca gtttgtggtg aaccaacaga
    18841 tatgctttct tttcttgaaa gaggtggtat tgcaactaat ccttgtgtag tccctcctag
    18901 aagcgtatta attacctctg gatatcaata tcagcaatta attggagaag gtgtacagca
    18961 taattttcct gctgctgcaa tacagttagg tttgcctggt tattttgagg tagacttgtt
    19021 gttacccaat tatattaatc agacggttga tccacgcata ggttttagtc aaactcagct
    19081 tattgtcaat catgttctat ggtttaacaa taagtgggtt attactgcta gcggaacatt
    19141 tgtatttcca tcaggcagcg cttcttttgg tagtccaaat ccaggaggtg gtgtaatagg
    19201 aattttaagt tataacttta attcccaatt aaatcttaca agtaatttgg gtattaccac
    19261 tcaatcggag cctagttacg atggtggaca aagctatacg agtgttaatc cagatcttat
    19321 tttatcgtgg actaaaaata aaatatcatt atttgctgag atttatgggc aaagtaaaac
    19381 agcacctgat gaaggaagcg gttttagtac tgatgcagga gttctttatc aagttaaaaa
    19441 gaatattgta attgattttg aggttgatca acgtatcact ggccttttga atggtgttga
    19501 gcgttattat ggcggaggaa ttactataca atttaattaa tgcggcttca ctttaacgca
    19561 aagccagcat agcgcacagg gtgtctatat ttggcaaaat gcaatttcca tttctattgt
    19621 tttatctctg atttcttgac cagtgacaag ctcataaagc ctgatagtta aactatgatg
    19681 ccctaactgg attttgggta tcattttcaa tttcttatct attcttaaca agatcagatg
    19741 gttcagtgat ttaggtgaaa gactatgctg atagaatcca ttatttgctc taatgggagt
    19801 atactgagta acacctcgta acaatgacaa ataaattttt acagtatctt ccagatcctt
    19861 caggcatgat acccattgac taatggtttt ttgtctcatt aggggatctg aatcaaacca
    19921 caataccaaa tgaggggaat taaattcgca ttctttagta ttggggtggt gtatttgtct
    19981 taaagttttt aaaaattcat catcatggat tttgttacta aatcgacctg gtacatgatt
    20041 taacacatga atttgtgttt ccagatcatc aaataattca ctatgattca atagattagc
    20101 ttttttaagt acatgctcaa ttctaattaa ctctttgata aatctgcttt ttaattccgg
    20161 cttttcaact atttcaacaa tctcaattat attctttaat gcaaatcgat gaatcacctc
    20221 atgagactca ttacaagctt cattaatggt tttaaaaagg tactccaggc gcaaggcaat
    20281 tcttgataaa aaatgagttg ctagttgaaa cgttatcata tggtcatgca tagattaagg
    20341 ccatccttag ctttatccta taataatggc aatttaaat
//
LOCUS       DACVWI010000039        20183 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.039, whole genome shotgun sequence.
ACCESSION   DACVWI010000039 DACVWI010000000
VERSION     DACVWI010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 20183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20183
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.039"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            35..421
                     /locus_tag="JBH85_05375"
     CDS             35..421
                     /locus_tag="JBH85_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3757 domain-containing protein"
                     /protein_id="HAU0945629.1"
                     /translation="MKRYYSTLLVLALAHTSLSAYAHTCPDPQTTSLQWGVPPSPWVE
                     NPFSPNSPQGEENTRFVRANILVAGYGQGVTCTYRNSVGDFSILWQVRTKIPARVDYS
                     WIETMGGYVCTRGLNECQFYVADPSA"
     gene            complement(525..1868)
                     /gene="nadA"
                     /locus_tag="JBH85_05380"
     CDS             complement(525..1868)
                     /gene="nadA"
                     /locus_tag="JBH85_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HAU0945630.1"
                     /translation="MFKNSTTYQPEATLMAIRNDMAICQSDYPLDWYQEDFIPYAQEY
                     QALPDRKLTTVLNWMKPYLAKAQNHFGNKLLLLAHYYMGGEIVRLIEQFGGKIGDSYQ
                     LALMAANNPEKSVIVESAVHFMAESISILANENQHVYITNPKSGCTMEMLAKDFMVEP
                     AFLDLNERYGAENILPVCYMNTSGRVKAMTGAQGGAVCTSSNVKKIFQWAQKQNKKIL
                     FIPDQHMGENVAYWLGIKNLAYWPGGTAGANYSLPAQDKKTLKQFDKAELILFASQCA
                     VHTHYQPEMCDYWKSLGYTTIVHPECRNDVIKVADYSGSTAFIWDLVVHDKAGTKSYA
                     IGTENHMVENLKQYCKNLGIRVVNLAEAPQKDTEKGVGCGCATMSRNDPPHLVALLDL
                     LRQGKSMPYNEVKAGDVVNEFTGTRNRLPVNDQQWVINNAKKALEMMINITEDRV"
     gene            complement(1943..3592)
                     /gene="nadB"
                     /locus_tag="JBH85_05385"
     CDS             complement(1943..3592)
                     /gene="nadB"
                     /locus_tag="JBH85_05385"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HAU0945631.1"
                     /translation="MSDQLSQQGQSFEFDVLVIGTGLAGLHYCLQLLAIQPKLNIALI
                     SKAESIECNSRYAQGGIAAAISPEDSLESHISDTVLAGDGLCYLPAVEFIIRQGPDII
                     KQLDQYKVQFKRENDGRFHLAKEGGHSHRRIFNCGDQTGLTLTQTLNHLARQHQQIQF
                     FEHHVAVNLITQYHPHRTDNQGEVLGAYILDCQRNRIHTFLAKCVILATGGAGKTYRY
                     TTNPMVATGDGVAMAYRAGARVGNMEFYQFHPTLLHHHTINNFLISEAVRGEGALLKN
                     PETGERFMKRYAPDQLELATRDVVARAIFSEIEQGQAGYVHLDISHQSKSFLKKRFPQ
                     IYSTLLSIGIDMSQDLIPVVPAAHYQCGGVLTDVDGRTDLARLYAIGEVAFTGLHGAN
                     RLASNSLLEALVMGSNAARCTLKDIATPLKLIDHIPSWSSPGEVNARRASQINAQWRG
                     LRGEMTSYAGIVRTEAGLEDLLQLILKRKKIIEEYYWKHCITRDFIELRNIILNAELI
                     VRAALSRRESRGGHFREDFPNKSFKAQESIAKLGQADSSLG"
     gene            complement(3589..4959)
                     /gene="purB"
                     /locus_tag="JBH85_05390"
     CDS             complement(3589..4959)
                     /gene="purB"
                     /locus_tag="JBH85_05390"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HAU0945632.1"
                     /translation="MTLTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWF
                     ESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLKD
                     KFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQ
                     HADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHV
                     AAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIW
                     SYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQ
                     RDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTV
                     MRRYNEPNAYEQLKELTRGQMIDAENLKKFIKTLSIPEEAKAELMKLTPETYTGLATQ
                     LVKAFS"
     gene            5112..6815
                     /gene="sulP"
                     /locus_tag="JBH85_05395"
     CDS             5112..6815
                     /gene="sulP"
                     /locus_tag="JBH85_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate permease"
                     /protein_id="HAU0945633.1"
                     /translation="MNTITESYRAGLFQKKYWLQNIISGLIVGVVALPLAMAFAIASG
                     AKPEQGLYTAIVAGLIVSIMGGSRVQIAGPTGAFIVVLSGITAQYGISGLQIATLMAG
                     FILVLFGFARLGSIIKFIPSPVIIGFTSGIAVVIWVGQWQYFFGLPAAGSGHFHEKFW
                     HLLLSFPHMNIATTFLGICALFIVLYSSKLPGLKRIPGPLIALVLVTIIQSVWHFEGV
                     ATIGSLFGGIPQGLPAFTWPEITMGRLIELIGPAFAIAMLGAIESLLSAVVADGMSGT
                     RHNSNRELVGQGIANIVAPLFGGFAATGAIARTATNIRNGGNSPLAGIIHSITLILVL
                     LFLAPLAVDVPLAALAAILFVVSWNMSEARHFIKLIRVAPRADVVILLVTFCLTVFVD
                     LVVAVNVGVIIAVLHFLRRMVNSIQIQRMSEGQLSQELAQEKNYDLPEGVMVYVIEGP
                     FFFGAVETFQSALANTHTDPKVLIIRMRWVPFIDVTGLQAMEEIILNLQKRGVRVLLS
                     EANPLVDAKLRKMGIVQLIGEQNYYKEFSQALDVCRINDSDRKSQPPFEVAKPLASVT
                     Q"
     gene            complement(7018..8721)
                     /locus_tag="JBH85_05400"
     CDS             complement(7018..8721)
                     /locus_tag="JBH85_05400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAU0945634.1"
                     /translation="MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEP
                     GFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQYNAIGQRDDRVIHHPAYVRSGDI
                     IYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTS
                     YYLDKLTHPSFSYNFTGAQFLTEIQGGSDVGANATRASLDKQNQWRISGEKWFCSNAN
                     ADLILMTARFDEETPGTKGLGLFLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEINF
                     EGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQIACYYAKNRRAFNHP
                     IIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANIN
                     KYFTAKRSVDNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRD
                     MHKFAIDELFIAHLQQLLEQVQDINPHKALFFEKINELDTTIKTMKLANHEEQSLHIK
                     TIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFIHDHIASCLLQHDDYMKILNKVI
                     G"
     gene            complement(8950..9948)
                     /locus_tag="JBH85_05405"
     CDS             complement(8950..9948)
                     /locus_tag="JBH85_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="linear amide C-N hydrolase"
                     /protein_id="HAU0945635.1"
                     /translation="MFKRIGLISIALSLNTISLTSEACSALVFNKNKPATVAVNLDWK
                     YREGAFVIHPRNAMMVSSVDYHSMHPLIWKSQYGSVIFHGGNRFKAGPSADGMNEKGL
                     TASILMLDSSSYPSNSELPALKTTEWVQYILDNFQTVQEVIDDSSNYQLVADTYRGIT
                     MNVHLMVSDAEGKSAVFEYLDGKLVIHTQDNLTTPVLTNTDYKSSLALLEEYQDHGGS
                     KALPGGYDSKSRFVRAAHYLKKLPSFIAKEEHIAYAFNGLNVVTQAPGTSSPTQLSMV
                     FDIPTKTIYFRSINEAALRVIPMDSIDFDYLYQPIALNVYQHLSGDVTDKFQPMIG"
     gene            10173..12560
                     /gene="ppsA"
                     /locus_tag="JBH85_05410"
     CDS             10173..12560
                     /gene="ppsA"
                     /locus_tag="JBH85_05410"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HAU0945636.1"
                     /translation="MTVKRHTIDLAHLGMRDLDQVGGKNSSLGEMISHLSSAGVSVPG
                     GFATTADSFREFLSQNGLDKKIYDKLTALDTDDVCQLAVVGKQIREMIIDTPFTPEFE
                     QSVRSSYQKLAQEIGHDNFSVAVRSSATAEDLPDASFAGQQETFLNVKGEEAVLAAIK
                     QVFASLFNDRAIAYRVHHNFAHNEVALSAGIQQMIRSDLAVSGVMFTMDTESGFDQVV
                     FITSSYGLGEMVVQGAVNPDEFYVHKPCLEAGKPAIIRRNLGSKALKMVYCDDPSLER
                     RVKTVDVDPAERLLFSLSKEEVEQLANQALIIEKHYGRPMDIEWAKDGVNGKLYILQA
                     RPETVKSRDNKQVLERYTLQKRGDVLAEGRSIGQRIGQGKAKVIKDINEMHRVQPGDV
                     LISDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATKTIKDGDV
                     VTVSCAEGDTGFVYSGLLPYEQERLDVETMPELPMKVMLNVGNPERAFAFQSIPNSGV
                     GLARLEFLISNTIGIHPKALLEFDTLKDEELKRYIKEKTIAYDSPVEYYIERLKEGIA
                     TIAAAFYPKPVIVRLSDFKSNEYANLVGGSLYEPQEENPMLGFRGASRYVSSNFSECF
                     ALECKAVRRVREEMGLDNVEVMIPFVRTVSEAGNVIEVLKKHGLERGKCGLRVIMMCE
                     LPSNALLASEFLQYFDGFSIGSNDLTQLTLGLDRDSGLVASQFDERNDAVKALLHMAI
                     AACKKEGKYIGICGQGPSDHQDFAQWLMKEGIESVSLNPDSVLQTCLFLAKQSMN"
     gene            12801..14240
                     /locus_tag="JBH85_05415"
     CDS             12801..14240
                     /locus_tag="JBH85_05415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HAU0945637.1"
                     /translation="MSNSKWWFLLVCFIPAITFASEGGEHSDPVTSVLLGVTTILFLA
                     IIGRYLARLLNQPGVLGELLIGMIVGNLSYFFGSELVVILREGSAIYDVVKEMLAGIS
                     LNQAVTHVIHNSYYANQVIHALSGAEGTEYLKIAYVVDIFSRYGVIFLLFMVGLETSL
                     SDLKKTGKESILVAVIGIVAPMILGFVVACFIIPNSNYKINLFIGATLSATSIGITAS
                     VLKEMNKLSTREARTILGAATLDDILGLIILAVVSSIVISGAVSIMVVMKIIILALLF
                     FIGTLFMGPFVLRKAVDLFRFLEPWESKLFISFLFIMALAWLASFIQLAAIIGAFAAG
                     VILHDDYFGEQKAHHKDHRSIHHLVSPLETILAPMFFTLIGIQVKLETFYDWNVIVLA
                     GGLSVAAILGKLLSGLGANRRDDRLLIGIGMLPRGEVGLVFASIGRTIGVISDNLFTA
                     IVLMIMITTFIAPPLLKMRYAKPKEDRNA"
     gene            14237..15079
                     /gene="nadC"
                     /locus_tag="JBH85_05420"
     CDS             14237..15079
                     /gene="nadC"
                     /locus_tag="JBH85_05420"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HAU0945638.1"
                     /translation="MNNVLSQVTFDVKRALQEDVGNGDVTAALLPQQLIVEAEIISRE
                     PMLVCGQPWVNEVFKQVDNTVEMEWRVSEGDFLSTPATLCIIHGTASSILTAERTALN
                     FLQTLSATATQTYHYVQKLKGTKAKLLDTRKTIPGLRLAQKYAVHCGGGLNHRMGLYD
                     AFLIKENHIKACGSVAHAISLARKTDKHLLVEIEVETLEELQEALDAHPDRILLDNFT
                     QDMLEQAVKMNHPKYCELEASGGININNIADIAQTGVDFISVGSITKSIQAIDLSLLI
                     RETL"
     gene            15076..16167
                     /locus_tag="JBH85_05425"
     CDS             15076..16167
                     /locus_tag="JBH85_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HAU0945639.1"
                     /translation="MSPSIVFTGGGTAGHVTPNIALIKEFRKEGWNVEYIGSVSGIEK
                     EMIEPMDIPFHGVSSGKLRRYFSLKNLLDPFKIVLGIIQSSLLFYKIKPDVVFSKGGF
                     VAFPVVVGAWLNRIPVVAHESDMSPGLANRLSFPFVNKICLTFDAGKKYFKRQDKIEV
                     TGTPIRQQLLTGNRMKGLELCGFNSSKPCLLVVGGSLGAGSINSCIRSALKQLTSEFQ
                     VIHLCGKGKLDSSLVGVEGYCQFEYANEELADLFAASSVVISRAGANSLYEILALGKP
                     HILIPISSQVSRGDQIQNARYFQGLGISVVIQDELLKADVLLQAVQDVMRKKDEIDNK
                     IKALKIESATDKIVAIIKEQAHVQTPRIV"
     gene            16142..17557
                     /locus_tag="JBH85_05430"
     CDS             16142..17557
                     /locus_tag="JBH85_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HAU0945640.1"
                     /translation="MFKPQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHG
                     YMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQIDDTVLLYGHLDKQPE
                     MSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEA
                     CEESGSYDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGNLVGKLTVELI
                     NEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCAEI
                     LGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNVMRPVTS
                     LKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGGSKGWNAPLLSDWLAKA
                     ASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHL
                     DMVKKLTSCVSYVLYSFSQKK"
     gene            17649..17966
                     /locus_tag="JBH85_05435"
     CDS             17649..17966
                     /locus_tag="JBH85_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HAU0945641.1"
                     /translation="MKARLIAILLSFIVIPFSSQAENEPQKTPAKQVLVKGKINLNTA
                     DVHSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEELAEVKGIGQRFVDKNREKLKEIF
                     VIN"
     gene            18162..19199
                     /locus_tag="JBH85_05440"
     CDS             18162..19199
                     /locus_tag="JBH85_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018577556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HAU0945642.1"
                     /translation="MFRKLRGVFSSDLSIDLGTANTLIYVRDKGIVLNEPSVVALRNE
                     SGQKRVAAVGLEAKRMLGRTPGNINAIRPMKDGVIADFFVTEKMLQHFIHKVHENKFL
                     RPSPRVLVCVPCGSTQVERRAIRESAMGAGAREVFLIEEPMAAALGSGMPVEEASGSM
                     VVDIGGGTTEVAIISLSGIVYHQSVRIGGDKFDDAIVSYVRRNYGTLIGETTAERIKH
                     EIGSAFPSRDLFEIEVRGRNLAEGVPRSFTLTSAEILEALQEPLSGIVGAVRAALELA
                     PPELAADIAERGMVLTGGGALLKNIDTLLMEETGLPVLIAEDPLTCVARGGGKALETM
                     DLRGGDFLSTE"
     gene            19177..20085
                     /gene="mreC"
                     /locus_tag="JBH85_05445"
     CDS             19177..20085
                     /gene="mreC"
                     /locus_tag="JBH85_05445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HAU0945643.1"
                     /translation="MISSQQNNKHNRLFAKGGHSSLGFVFALAFSILLMFSDYHYRYL
                     DFVRSGFSLIVSPLQYAVDYPVRVIGWIQSLVSAKKALIDENMRLKYKQTMLEAELQK
                     LIVIQRENSQLKELLLTSSKADMRVMAAQILAVDTSQARQVVVLNKGTRDGVYVGQPV
                     LDAKGVMGQVIDVGPMTSTLLLISDSKSAVPVRNNRTGERAILVGTNDIEELSLINLP
                     KTSSIHPGDVLVTSGLGRRYPEGYPVGRVEEVKSIPGEDFVKVTVSPVALLNRNRLVL
                     LIWADSEQEELTAQINERLNAEESTA"
     gene            20082..>20183
                     /locus_tag="JBH85_05450"
     CDS             20082..>20183
                     /locus_tag="JBH85_05450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HAU0945644.1"
                     /translation="MSVLHIRLGLGFLVALALSILPMPELISIFRPPW"
BASE COUNT         5607 a         3716 c         4523 g         6337 t
ORIGIN      
        1 tggaattatc aggattagaa ttgatggagt ctttatgaaa agatattatt ctacactatt
       61 agttttggct ttagctcata ccagtttgag cgcttacgcg catacatgtc ctgatcctca
      121 aaccacgtca ttacaatggg gtgtgcctcc atcaccgtgg gtagaaaatc ctttttcccc
      181 aaatagccct cagggagaag aaaatactcg cttcgtgcga gctaatattt tagtcgcagg
      241 ttatggtcag ggtgtgactt gtacttatag aaactccgta ggtgattttt ctattttatg
      301 gcaggtgcgg accaaaatac ccgctcgtgt tgattatagc tggatagaaa ctatgggagg
      361 gtatgtctgc acacgtggtt tgaatgaatg tcagttttat gtggctgatc cttcggctta
      421 atatacccgc ttccttacgg tcgcggctcg gatttgataa gcactgttga tgcaaattcg
      481 agccgcgacc gtaaggaagc ggacaataca ctagctaaca cgtattaaac cctgtcttca
      541 gtgatattaa tcatcatttc cagggctttt ttggcattat taataaccca ttgttgatcg
      601 ttgactggga gtctgtttct ggttcctgtg aattcgttga ccacatcacc tgcttttact
      661 tcattgtaag gcatcgattt gccctggcga agtaaatcga ggagagcgac cagatgtggc
      721 ggatcattgc gagacatggt agcacaacca catccaactc ctttttcagt gtctttttga
      781 ggggcttcag caagatttac aacacgaatt ccaagatttt tacaatattg ctttaagttt
      841 tctaccatgt ggttttcagt tccgatggca taactttttg tacctgcttt gtcatggact
      901 accagatccc atatgaatgc agtagaacct gagtaatcag ccactttgat gacatcatta
      961 cggcactctg gatgtacaat ggtagtgtat cccaggcttt tccaataatc acacatttca
     1021 ggttgataat gggtatgaac cgcgcattga cttgcgaata aaatcaactc tgctttatca
     1081 aattgcttga gtgttttttt gtcttgcgct ggtagtgaat aattagcgcc ggcagttcct
     1141 ccaggccaat aagcgagatt tttaattcct aaccagtaag cgacattttc tcccatgtgt
     1201 tgatcaggaa taaacaggat tttcttgttt tgtttttgag cccattgaaa aatttttttg
     1261 acattggaac ttgtacaaac cgcacctccc tgggcaccgg tcatggcttt cacacgacca
     1321 gaggtattca tgtagcacac aggtaaaata ttttcagcac cataacgctc atttaaatca
     1381 aggaaagcag gctcgaccat aaagtctttg gcaagcattt ccatggtgca gcctgacttg
     1441 ggattggtga tgtagacgtg ttgattttca ttagccaaaa tgcttatgga ttccgccata
     1501 aaatgaactg ctgattccac tatgactgat ttttcagggt tattcgcagc catcaaagcc
     1561 aattggtagg agtcaccgat tttaccccca aactgttcaa ttaatcgaac aatttctcca
     1621 cccatataat aatgggcaag aagtaacagt ttgttaccga aatgattttg ggctttagca
     1681 agataaggtt tcatccaatt taaaacagtc gtaagctttc tatcgggtaa agcctgatat
     1741 tcctgggcat aaggaataaa atcttcttga taccaatcta atggataatc gctttgacat
     1801 atagccatat cattacgaat agccatgagg gtcgcttcgg gttggtaagt agttgaattt
     1861 ttaaacatta aatctacctc tagtcattag ggatttgtgg gaaggattct ttcattattg
     1921 ttaatgggat agctttgcca ggctatccta atgaactgtc tgcctgtccc agttttgcaa
     1981 tactttcctg ggctttgaaa cttttattgg ggaaatcttc acgaaaatgt ccaccacgtg
     2041 attcccttct ggaaagggct gctctaacaa tcaattctgc attaaggata atgttcctta
     2101 actcaataaa atctctggta atgcagtgtt tccagtaata ctcttcaata attttcttac
     2161 gcttcaatat taattgtagt agatcttcaa ggcctgcttc agtgcgcaca atgcctgcat
     2221 aggaagtcat ttcccctctt aagcctctcc attgagcgtt aatttggctg gctcttcttg
     2281 cattgacttc acctggagag ctccagctag ggatatgatc gataagtttc agcggagtag
     2341 caatgtcttt gagtgtacag cgtgccgcat tggaacccat gaccaaggct tcaagtaggg
     2401 aattgcttgc cagcctgttc gcaccatgca gcccagtaaa agccacttca ccgatagcgt
     2461 ataatcgtgc cagatcggtg cggccgtcca catcagtaag aaccccaccg cattggtaat
     2521 gagcggccgg aacgacagga atcaaatcct ggctcatatc aattccaata gataacaatg
     2581 tggaataaat ttgtgggaaa cgttttttca ggaaagattt gctttgatga gaaatatcca
     2641 gatgcacata tccagcctgg ccttgctcaa tttcactaaa aatagctctt gccacgacgt
     2701 ctctggttgc taactcaagt tggtcaggtg cgtatcgttt cataaaacgc tcgcctgttt
     2761 cagggttttt aagcaaagcg ccttcgcctc gaactgcttc ggaaattaaa aaattgttaa
     2821 tggtgtgatg gtgcaagagg gtaggatgaa attgataaaa ttccatgtta cccacacgag
     2881 ccccagccct gtaagccatc gcaacaccat cacctgttgc aaccataggg ttagtcgtat
     2941 acctgtaggt tttgccggcg ccaccggtcg ctaaaatgac gcatttcgca agaaaggtgt
     3001 gaatgcgatt acgttggcag tcgagtatat aggctcctaa tacctcaccc tggttatctg
     3061 tccggtgagg atgatattga gtaatcaggt taaccgccac gtgatgttca aaaaactgga
     3121 tctgttgatg ttgccttgcc aaatgattga gagtttgtgt tagcgttaat cccgtttgat
     3181 cgccacaatt aaaaatgcgc cggtgtgaat ggccaccttc tttagcaaga tgaaagcgac
     3241 catcattttc tcttttaaat tgaactttat actgatcaag ttgttttata atatctggcc
     3301 cttggcggat aataaattcc accgcaggta agtagcatag cccatctcca gccaatacag
     3361 tatcagatat atgagactcc agtgaatctt ctggcgaaat ggcggcagca atcccccctt
     3421 gagcatagcg gctgttacac tcaatggact ctgctttgct gattaacgca atgtttagct
     3481 tgggttggat agctaaaagc tgcaaacaat aatgtaaccc ggctaatcct gttccaatga
     3541 cgagaacatc gaattcgaac gattggcctt gttgtgatag ctgatcactc atgaaaaagc
     3601 cttgaccaat tgggttgcaa gaccggtgta agtctctgga gttaatttca ttaactctgc
     3661 ttttgcttct tcgggaatag acagggtttt aataaatttt ttaaggtttt cagcgtctat
     3721 catttgtcct cgtgtaagct cttttaattg ttcataggca ttgggttcat tgtagcggcg
     3781 catgacagtt tgtatggcct ctgctaaaac ttcccagttt tcggataaat ctttttgtag
     3841 agctgattta ttgatttgta atttatcatt acctttggct actgagtgat aggcaatcaa
     3901 actgtaagag aaggctacgc ccaagttacg taagacagtc gaatcagaca ggtctctttg
     3961 catgcgtgat tgagttaatt tgttggcaaa atgaataaat aaagcattag acagacctaa
     4021 attcccttcg gcattttcaa agtctatagg atttaccttg tgcggcatgg tcgatgagcc
     4081 tacttcttcg gcaattgttt tttgcttaaa gtagccaaga gaaatatagc tccatatgtc
     4141 ttgggtataa tccagaagaa tattattaat tctcaccata atctgggaga cttccgctat
     4201 gccatcatgt ggttcaattt gagtggtata ggcgttaaag gataaaccta gggatgtaac
     4261 aaaattagcg caatgcttac gccagtccac ttcgggatag gctgctacgt gagcattgta
     4321 attgccaaca gctccattaa atttggcagg gattaatact tctgccaatt gttgctgggg
     4381 tcgtttaagg cgagctacaa aattgaccaa ttctttaccc atggtggttg gtgttgctgg
     4441 ttgaccatgc gttcttgaga gcatcgcaac gtcagcatgt tgttttccaa gaagcgtaat
     4501 gcttcccatg atctcagcta tagtaggttg tataacttgg gctatcgctt gtttgatcat
     4561 taaagcataa gccaggttat tgatgtcctc tgaagtgcag gcaaagtgta tgaaagcaac
     4621 gcaagatttg agttgttcat tttcctgaaa tttatcctta agataatact ctacagcttt
     4681 aacgtcatga ttggtttgtt tttcaaattc ttttattttt tcagcttctg attcattaaa
     4741 attggaaata agatcagata aaaatttacg agccttgtta tccaaagcag gtacttctgg
     4801 aatagtgtcg ttagcagcta atgattcaaa ccacttgatt tcaaccatta aacgataata
     4861 ggttaatgca aactcactaa aatagggact taatgctctg gttttattga cataacgacc
     4921 atctatgggt gaaatcgcgt ttaatgcagt aagtgtcatg ataggtagct taatccaata
     4981 ttaaagcgta tataatatta gatgcaggac aagatgtgaa ttaaagcgat aaatattcta
     5041 gaaaattagc gtaaatttgt tcaaagtgcg tataataatg accatgtttt taatgggaca
     5101 ggttattatt tatgaacacg atcacagaat cgtatcgagc cggtttattt caaaaaaaat
     5161 attggttaca aaatattatt tctggcttaa ttgttggtgt tgttgcttta cctttggcaa
     5221 tggcttttgc aatagcttcc ggggctaaac cggaacaagg attatatacc gctatcgttg
     5281 ccggattaat agtctcaatt atgggtggca gcagagttca aatcgccggt cctacaggtg
     5341 ctttcattgt cgttctttcc gggataacgg cccaatatgg tatttcaggg ttacaaatag
     5401 ctactttaat ggcgggcttt atcttggttc tgtttggctt tgcccgtctg ggatccatta
     5461 ttaaatttat tcccagtcca gtaatcatcg gatttacttc agggattgct gtcgttattt
     5521 gggtagggca atggcaatat ttttttggtt tacccgcagc tggaagcgga cattttcatg
     5581 aaaaattttg gcatttactt ctgtcttttc ctcatatgaa tatcgcgact acttttttag
     5641 gtatttgtgc tttatttatt gtactgtatt ccagtaaatt accaggacta aagcgtattc
     5701 ctggcccttt gattgctttg gtactggtta caatcataca gtcagtttgg cactttgagg
     5761 gagtggccac tataggcagc ctctttggag gaataccaca aggcttgccg gctttcacct
     5821 ggcctgaaat cacaatggga cgactgattg agttgattgg gccagccttt gctattgcga
     5881 tgctgggagc aattgagtcc ttattgtctg ctgtggttgc cgatgggatg agtggaacca
     5941 gacataattc gaatagagaa ttagttggtc aagggatagc taatattgtg gcgcctttgt
     6001 ttggtggttt tgctgccacc ggagcgattg cccgcacggc cacaaacata cgcaatgggg
     6061 gcaatagtcc tctggcagga attattcaca gcattacttt gattttagtc ctgttgttcc
     6121 tggctcctct ggcagtggat gtacctctgg cggcattggc tgctatttta tttgtggttt
     6181 cgtggaatat gagtgaagcc cgccacttta ttaaattaat tcgagtagct cctcgtgctg
     6241 atgtagtcat cttattggtt actttttgtc tgacggtgtt tgttgatttg gttgttgctg
     6301 tcaatgtagg ggtcatcatt gccgtcttgc atttcctgcg ccgaatggtt aacagcattc
     6361 aaattcagcg tatgtcagaa ggacagttat ctcaagagtt ggcacaagaa aagaattatg
     6421 atttgcccga aggggtcatg gtgtatgtta tcgagggccc gtttttcttt ggtgctgtcg
     6481 aaacatttca gagtgcgttg gctaataccc atactgatcc gaaagttttg atcatcagaa
     6541 tgcgttgggt tccgtttata gatgtcactg gtttgcaggc tatggaagaa attattttga
     6601 atttgcagaa gcgtggagtc agagttttgc tcagtgaggc taacccgctg gttgatgcga
     6661 aactccgtaa aatgggaatt gttcaattga ttggagagca aaattattat aaggaatttt
     6721 ctcaggctct tgatgtttgc cgaattaatg attctgacag aaagagtcag cctccctttg
     6781 aagttgcaaa gccgctggct tcagttaccc agtgagctaa gctggttatc tgttcaagtt
     6841 gaggaagcgc ttcctcaact cgaatggata gaattaacgt gataatcgaa aaacttcaaa
     6901 gattgccatg cctgttttta tatgtaattc aatttgctaa acttaaaatc tatttttttg
     6961 gtttgacact acgaataatt tttcccggcc tgctggttaa tgcatttgca gagtgaacta
     7021 tccaattact ttatttagta ttttcatata gtcgtcgtgt tgaagtaaac aacttgctat
     7081 atgatcatga ataaataaag ttaatccagc ttgttttgtt tctggcgact ggccttgttg
     7141 tatctctata gccagacata aagcagcaag caacgaggcc atatgttcaa tgattgtttt
     7201 tatatgcaga ctttgctcct catgattggc taatttcatt gtttttattg ttgtatctaa
     7261 ctcatttatc ttttcgaaaa acaatgcctt atgagggttg atatcctgaa cttgttccag
     7321 aagttgttgc aaatgggcaa tgaataattc atcaattgca aatttatgca tatctctgag
     7381 ggtttgcatc cataatgtaa aatgcgtccc ctcccaattt tcgcaaacga tacagtctct
     7441 taatagtctt ggtaatgaag aaaagttctc tatggtgcca tttcctgcca ataaatcgag
     7501 acaatgatgt atattgtcca ctgaacgttt ggctgtaaag tacttgttga tattcgccag
     7561 tgtacgtaat aagagttgtt gtgatttggt ttgttgaggc tctggaagag catctaattc
     7621 atcctgacaa cgagccatat gaaacacgct ggctaacata gccagatttt ctgattttat
     7681 tttagccaaa ctttctttta ccagaggata ttcaataata ggatggttaa atgctcggcg
     7741 gtttttagca taatagcaag caatctgata ggcgcgacga gacataccca agactgagaa
     7801 ggaattgaat atccttgata aatgcaacac attttccata accaaatgta ttccttccgc
     7861 cacatcaccc atagggtagg ctagtgcccc ttcaaaattt atttctgcgg ttgccatggt
     7921 gcgggtacca attttttgtt ttaatcgacg aagataatag tgattagggc tgccatcgtc
     7981 caggcgactg ggcactaaaa acaaacccaa ccctttggtt ccgggagttt cctcgtcgaa
     8041 acgagccgtc attaaaatta aatcggcatt agcgttggag caaaaccatt tttcacctga
     8101 aatgcgccat tgattttgct tatccagact ggcacgggtc gcattggcgc caacgtcaga
     8161 accaccttga atttcagtta aaaattgggc tccagtaaaa ttgtaactga aagaagggtg
     8221 agtgagttta tcgagataat atgaggtttt ctctaattgg gaataacgac ttaaaacacg
     8281 tattactccc gcagaacagg caatagggca gttgtgtcct gcctccccgg catgcgatga
     8341 gagcagaaac aggctcaacg tttttttcat ttgccctggc tttagtaaat attgcatgag
     8401 gttggatcca taaataatat cgccggatcg aacataggca ggatggtgga ttacccgatc
     8461 atcgcgctga ccaattgcat tgtattgttc gatttttggc aagttggcat ccaggttatt
     8521 ttccataacg gttggttcta attcttcagc tactgctttg gaaaattgac tcaattgttg
     8581 aataaaacca ggctcatcgg gaaaataagt tttgtaagtg tgcattaaac aagacttttc
     8641 gagcagtata ttgtctttga gttgtttgtc ccataacctg aaatggtctc ttgctgtttc
     8701 atattcattt tttatgctca ttaccccacc ctttggtaat taatagatgc attgatatca
     8761 cagtttttta agttcttgtt gtacttaaat atttttcaat aaattgtaat agcggttatt
     8821 aatcaattat ccccctcggc ttcgtttgtg ccatatccat gcggcttcac aatagacctc
     8881 ttgcctaaac ttgcctcttt cattaaacaa aataatcagg ttctgcaaga gggcctaatg
     8941 aattccaatt tatcctatca tgggttgaaa tttatcagtg acgtccccgg acaaatgttg
     9001 ataaacattc agggcgattg gttgataaag ataatcaaag tcaatgctat ccattggaat
     9061 cactcttaat gcagcctcgt taatgctgcg gaagtaaatt gttttggtcg ggatatcaaa
     9121 aaccatactc agttgggttg gagaagaagt gccaggtgct tgtgtgacga cattgaggcc
     9181 gttgaaagca taagcaatat gttcttcttt agctataaag ctgggaagtt tttttagata
     9241 atgtgctgct cttacaaaac gggatttaga atcatatcca cctggcagag ccttggagcc
     9301 accatggtcc tggtattctt caagaagagc caatgacgat ttatagtccg tattggttag
     9361 tactggcgtg gtcaagttgt cttgagtatg aattaccagt ttaccatcca ggtactcaaa
     9421 aacagcagat tttccttcgg catcgctcac catcaagtga acgttcatgg ttattccccg
     9481 gtaggtgtct gcaaccagtt gataatttga gctgtcatct atgacttctt ggaccgtttg
     9541 aaaattatct aaaatatact gaacccattc agtagttttt aaagcgggaa gctcagagtt
     9601 actgggataa cttgatgaat caagcatcag tattgaagca gtaagtcctt tttcattcat
     9661 cccatcagca gatggtcctg ctttaaaccg atttcctccg tgaaatatca cacttccata
     9721 ttggcttttc cagattaatg gatgcatgct gtggtaatct acactggaaa ccatcatggc
     9781 atttcgagga tgaatcacaa aagctccttc ccggtatttc cagtccaaat tgactgcaac
     9841 agttgcgggc ttgtttttat tgaacactaa ggcagaacag gcttcgctgg ttaaggagat
     9901 agtatttaaa gataaggcaa tcgatattag tcctatgcgt ttaaacattt caaatccttt
     9961 tgcttattat attcttggaa caggtttgct tacccgttca accctaaaac atggacagca
    10021 agatatctta ccgcatagta catatacttg tcattttttg tgaaaatgcc ggtattttga
    10081 cctttataaa aatgaaatac agcacaagtt ctaattccaa taaagtaaca atttaagtag
    10141 aatgtttact attttatgaa tttggggcgg ttatgactgt taaaagacat actatagatt
    10201 tggcacatct tggcatgcgc gatttggatc aggtcggtgg taagaactct tctcttggtg
    10261 aaatgattag tcatttgtca tcagcaggcg tttctgtgcc gggaggattt gctacaactg
    10321 ctgattcttt cagagaattt ttgtcccaaa acggtcttga taagaaaatt tatgataagt
    10381 tgactgctct cgatacggat gatgtctgcc aactggcagt ggtagggaaa caaattaggg
    10441 aaatgattat tgatacgcca ttcaccccgg agtttgaaca gtcggttcgc tcttcctacc
    10501 agaaacttgc tcaagagatt gggcatgata attttagtgt tgcagtaaga tcttctgcta
    10561 ctgctgaaga tttgcctgat gcttcttttg ccggtcagca ggaaactttt ttaaatgtga
    10621 agggagaaga ggcggtattg gctgccatta aacaggtatt tgcttcttta tttaatgaca
    10681 gggcaatagc ttatcgtgtg catcataatt ttgctcataa cgaagtggca ttgtctgctg
    10741 gcattcagca aatgattcgt agtgatttgg cagtcagtgg tgtcatgttt actatggata
    10801 ctgaatccgg ttttgatcaa gtagtattta tcacttcctc ttatggttta ggtgaaatgg
    10861 ttgttcaagg cgctgtaaat ccagatgaat tttatgtcca taaaccatgc cttgaagccg
    10921 gaaaaccggc gattatccgt cgaaacctgg gcagcaaggc gttaaagatg gtttattgcg
    10981 atgacccttc ccttgaaaga cgtgttaaaa cagtcgatgt agaccctgct gaaagattat
    11041 tgttttcctt atccaaagag gaagtagagc aattagcgaa tcaggcactt attattgaaa
    11101 aacattatgg tcgccctatg gatattgaat gggcgaaaga cggggtcaat ggtaaactgt
    11161 atatcctgca agctcgtccg gagactgtaa aaagcaggga taacaaacaa gtgctcgaac
    11221 ggtatacttt gcaaaaaaga ggcgacgtat tggctgaagg ccgtagtata ggtcaaagaa
    11281 tcggtcaggg taaagcaaag gttattaaag atattaatga aatgcacagg gttcaacccg
    11341 gcgatgtttt gatatccgat atgaccgatc ctgattggga acctgtcatg aagcgtgctt
    11401 ctgcaatcgt taccaatcgt ggaggcagaa cttgtcatgc agctattatt gctcgtgaat
    11461 tggggattcc tgcagttgtt gggtgtggtg atgcaacaaa aacgattaaa gatggtgatg
    11521 tggtgactgt aagctgtgcg gaaggcgata caggttttgt ctattctggc ctgttgcctt
    11581 acgagcaaga gcgtcttgat gtagaaacca tgcccgaatt acccatgaaa gtgatgttga
    11641 atgttggaaa ccctgaaaga gccttcgcat ttcaatcaat acctaattcc ggagtgggat
    11701 tggcccgtct tgaatttttg atttccaaca cgataggtat tcatcctaaa gcgcttctgg
    11761 aatttgatac tttaaaggat gaggaactta agcggtacat taaagaaaag accatagcgt
    11821 atgattcacc tgtagaatat tacattgaaa gattaaaaga aggcatagcg actattgctg
    11881 ctgcttttta tcccaaaccc gttatagtca ggctttcaga ttttaaatcg aatgaatacg
    11941 ctaatctggt tggtggctca ttgtatgaac cccaagaaga aaatcctatg cttggttttc
    12001 gtggcgcctc tcgttatgtt tcttcaaatt tttctgagtg ctttgctctt gaatgtaaag
    12061 cagtaagacg agtcagggag gagatgggtt tagataatgt tgaggtcatg attccttttg
    12121 tccgaacagt ttctgaagcc ggtaatgtca tcgaagtatt aaaaaagcat ggtctggaaa
    12181 gaggaaaatg tgggttaaga gtgattatga tgtgcgagtt accttccaat gccttgttag
    12241 ccagtgaatt tttgcagtat tttgatggtt tttccatagg atcgaatgat ttaactcaat
    12301 tgactttagg attagacagg gattcaggtt tggtggcttc acaatttgat gagcgcaacg
    12361 atgctgtgaa agctttattg catatggcta ttgcagcttg taaaaaagaa ggcaagtata
    12421 taggtatttg cggtcaaggt ccttcagatc accaggattt tgcccaatgg ctgatgaagg
    12481 aaggaattga gagtgtttct ctaaaccctg actctgtttt acaaacatgt ttgtttttag
    12541 ctaaacaatc gatgaattga tgaaccagag tgtactggca attcagtttg aaattgttag
    12601 gctgttggtg cattaggaat ttactgaggc attcctatga ttttgaaatg cagcagattg
    12661 ccttggaaga tgagtttttt gatcaataca attattttgg ctgttagtaa tggaactact
    12721 tgtgatggta tggtgttgca attcaaaatt cccttgcatt tgggagaaag cagcacatta
    12781 agcttatagg ataaagcggt atgagtaatt caaaatggtg gtttctttta gtctgtttca
    12841 ttcctgctat tacttttgca tctgaggggg gagagcattc agatccagtc acctctgttc
    12901 ttctgggtgt cactactatt ttatttttag ctatcattgg tcgttattta gccagacttc
    12961 ttaatcaacc tggcgttctt ggtgaattac tgatagggat gatagttggg aatctctctt
    13021 actttttcgg aagtgaatta gtagtaattc ttcgcgaagg ttctgccatt tatgatgttg
    13081 tcaaagaaat gttagcagga atttctttaa atcaggcggt aactcatgtt atccataatt
    13141 cctattatgc taaccaggtg atccatgcct taagtggagc agagggaact gaatatctta
    13201 aaatagccta tgtcgttgat attttctcac gttatggtgt catatttctt ctttttatgg
    13261 ttggtcttga gacgtcgctt tctgatttga aaaaaactgg caaagaatcc attcttgttg
    13321 ctgtgatcgg tatcgttgcg ccaatgattt tagggtttgt agtggcttgt tttatcatac
    13381 ctaactcaaa ttacaagatt aatttattta tcggcgctac cttgagtgct accagcattg
    13441 gtattacagc aagtgttctt aaagagatga ataaactgag tacacgtgaa gcaagaacaa
    13501 ttcttggtgc ggctactttg gatgatattt taggcctgat tattttggcg gtagtcagca
    13561 gtatcgttat cagtggtgct gtaagtatca tggttgtaat gaaaattatc attttagccc
    13621 tactgttttt cattggtacc ttgtttatgg ggccttttgt acttcggaaa gcagtcgatt
    13681 tattccgttt tctggagcct tgggaatcca aattatttat ctcattcctt tttattatgg
    13741 cattagcctg gttggcttca tttatacagt tggcggctat aattggtgct tttgctgcgg
    13801 gcgtcatttt gcacgacgac tattttggag agcaaaaagc ccatcataaa gatcatcgca
    13861 gtattcatca tttggtatct cccttggaaa ctatattggc tcctatgttt tttactctca
    13921 ttgggataca ggttaagtta gaaacttttt atgattggaa tgtcattgtt ttagcgggag
    13981 gcttatcagt agcggccatt cttggcaagc tgcttagtgg cttaggcgct aatcgacggg
    14041 atgataggct gctcattggt ataggaatgc tgcctcgtgg agaggtaggt ttggtttttg
    14101 cttctattgg cagaactata ggcgtaataa gtgataatct gtttaccgca attgtattga
    14161 tgatcatgat cacaaccttt attgcgccac ctttattaaa gatgcgatat gccaaaccaa
    14221 aagaggatag gaatgcatga ataatgtttt atcgcaagtt acatttgatg taaaacgtgc
    14281 tttgcaagag gacgtgggca atggtgatgt tactgcggct ttgttgcctc agcagctgat
    14341 tgtagaagca gaaattatat caagagaacc tatgcttgtt tgtgggcagc cctgggtaaa
    14401 tgaggttttt aagcaagttg ataatacagt tgaaatggag tggcgggttt ctgaaggaga
    14461 ttttttaagc acgccagcta ctttatgtat tattcatggt actgccagta gtattttaac
    14521 ggcagagcgt actgcgttaa attttttgca aaccctttca gctacggcaa cacaaactta
    14581 tcactatgtt cagaaattaa aaggtaccaa ggcaaagctg ttagacacac gcaaaacaat
    14641 tccaggactt cggttagcgc aaaaatacgc tgtccattgt ggtggcgggt taaatcatcg
    14701 tatgggactt tatgatgcgt ttctaatcaa agaaaatcat atcaaagcct gtggttcagt
    14761 tgctcatgct atcagtctgg caaggaaaac cgataaacac ttactggttg agattgaagt
    14821 ggaaaccctt gaggagttgc aagaggcttt ggatgctcac cctgacagga tattattgga
    14881 taatttcact caagatatgc ttgagcaagc agtcaaaatg aatcatccca agtactgtga
    14941 attggaagcc tctggcggca ttaatatcaa taatattgca gacattgctc aaaccggagt
    15001 ggattttatt tcagttggat ccatcaccaa atcaattcaa gcaattgatt tgagcttatt
    15061 gattagggaa acattatgag cccaagtatt gtttttaccg ggggaggcac tgccggacat
    15121 gtaacgccta atatcgcttt gattaaggaa tttcgaaaag aaggctggaa tgtagaatat
    15181 atcggctctg tttccggaat tgaaaaggag atgattgagc cgatggacat tccttttcat
    15241 ggagtcagta gcggtaaatt gcgcaggtat tttagtttga agaacttgct tgatcctttc
    15301 aaaattgttc tgggaattat tcaatcttct ttgctatttt ataaaatcaa acccgatgtg
    15361 gttttttcaa aaggtggctt tgtagccttt cctgtggttg taggcgcctg gttaaatcga
    15421 attcctgttg tcgctcatga gtctgatatg agtccaggac ttgcgaatcg cctatccttt
    15481 cctttcgtca ataaaatatg ccttactttt gatgctggca aaaaatactt taagcgtcag
    15541 gataaaatag aagtgacggg tactccaatt cgtcaacagc tattaactgg aaatcgaatg
    15601 aaaggattgg agctatgcgg atttaattcc tccaaacctt gcctgcttgt agtgggagga
    15661 agcttagggg ctggttcaat taacagttgt attcgaagcg cattgaaaca attgacatca
    15721 gaatttcaag tcattcatct ttgtggcaag ggaaaacttg attcttcatt ggttggtgtg
    15781 gagggatatt gccaatttga atacgccaat gaagagttgg ctgatctgtt cgctgcttct
    15841 tctgtggtga tttctcgagc aggagctaat tctttgtatg aaatattagc attaggaaaa
    15901 ccacatatct taattccaat ctcttcacaa gtaagcagag gagatcaaat tcagaatgca
    15961 aggtacttcc agggattggg aataagcgtt gtgattcagg acgagttatt gaaagctgat
    16021 gttctattac aggcagtaca ggacgtaatg cgaaaaaaag atgaaataga taataaaatc
    16081 aaagcattaa aaattgagtc tgccactgat aagattgtgg caattatcaa ggagcaagca
    16141 catgttcaaa ccccaaggat tgtatgatta catatgccaa cagtggcaag aagagatatt
    16201 gccaagttta tgtgactata taaaaatccc taataaatct cctcactttg atgcaaaatg
    16261 ggaagaacat ggttatatgg agcaggcagt taatcacatt gccaattggt gtaagtcgca
    16321 tgctcccaaa ggaatgacgc tggaaattgt tcgcctgaaa aataggactc cattactatt
    16381 tatggaaatt ccaggccaaa ttgatgacac tgtgttgctt tatgggcact tggataaaca
    16441 acctgagatg tcaggctgga gtgacgattt acatccatgg aaacccgtat tgaaaaatgg
    16501 attgttatac ggaagaggag gggcagatga tggatattct gcttatgcat cactcacggc
    16561 tattcgcgcc ttggaacagc aaggtttgcc atatcctcgt tgtatattaa tcatcgaagc
    16621 gtgtgaggaa agtggcagtt acgatttgcc tttttatatt gagttgctga aagagcgtat
    16681 tggtaaacca tcattggtta tttgtcttga ttccggagca ggtaattatg agcagttatg
    16741 gatgactacg tcattacgcg gtaatttggt cggtaagtta actgttgaat taattaatga
    16801 gggcgttcat tcggggagcg ccagtggtat agtggcagac agtttcagag tagctcggca
    16861 attgatcagc aggatagagg acgaaaacac cggagagata aaattacctc agttgtattg
    16921 tgatattcct gatgagagaa taaaacaagc gaaacaatgt gcggaaattc taggtgaaca
    16981 agtttatagc gaatttccat ggatagattc tgccaaaccc gttattcaag acaaacagca
    17041 attaatatta aacagaacat ggcgccctgc cttgacggta actggtgcag atgggtttcc
    17101 agcgatagct gatgcaggga acgtaatgcg ccctgttacg tctttgaaat tatccatgcg
    17161 tcttccacca ctggttgatc cagaagcagc ttctgttgct atggaaaaag ccctgaccca
    17221 aaaccctccc tacaatgcaa aggttgattt taaaatacaa aatggaggtt ccaagggatg
    17281 gaatgctcct ttgctttccg attggttagc gaaagcggca tctgaagcat caatgactta
    17341 ttatgataaa cctgctgcct acatgggaga agggggaacc attccattta tgagtatgct
    17401 aggcgagcaa tttcccaaag cacaatttat gataactggt gttttaggcc cccattccaa
    17461 tgctcatggt ccgaacgagt tcttacattt ggacatggta aaaaaactca cctcatgtgt
    17521 ctcgtacgtt ctttatagtt tttcacagaa aaaataattt gaaattggct agactcttgt
    17581 ttgaaaaatt gagatactcg ctcgcggctc tggaacgagc cgtttagtcc aacaattagg
    17641 agaaatttat gaaagcaaga ctcattgcta ttttgttgtc atttattgtt atccctttct
    17701 cttctcaagc tgagaacgag cctcaaaaaa ctccagctaa acaagtcctt gttaagggca
    17761 agattaatct caatacagcg gatgtgcatt ctttaacagg ctcttttaaa gggataggaa
    17821 aaaaacgggc tgaagctatt attgcttata gagagaatca tcaaggcttt aaatctctgg
    17881 aagagcttgc ggaagtcaag ggtatagggc agcgttttgt agataaaaat agagaaaaac
    17941 tgaaagaaat tttcgttatt aattaattca cgtgcaatat aaaacgtaaa tcatgtttta
    18001 taaagcaaat gagattgatc ccatatgaaa gcgttgcttt tactatggga tccggttaaa
    18061 agcagttgtt tggtgtataa aattcttatg cggcaactgt cgatttttat ccaaatatag
    18121 gataaagtag caatcaaaaa aacaacgggg tagtactgcg tatgttcagg aaattaagag
    18181 gcgtgttttc tagcgattta tcaatcgatt tgggaacagc taatacattg atttacgtaa
    18241 gagataaggg gattgttctc aatgaacctt ctgtagtggc attgcgtaat gaatcaggcc
    18301 agaagcgtgt cgccgctgta ggtcttgaag ccaaacgcat gttgggaaga acccctggca
    18361 atattaatgc gataagaccc atgaaagatg gggttattgc tgactttttt gtcaccgaga
    18421 aaatgttgca gcactttata cacaaagtgc atgaaaataa atttttacga cccagtccac
    18481 gcgttttggt ctgtgttcct tgtggttcta cacaagtgga acgcagagca attcgtgaat
    18541 ctgcaatggg cgctggtgct cgagaagttt tccttattga agagcctatg gctgcggcat
    18601 taggttccgg aatgcctgtt gaggaagcca gtggttctat ggtggttgat ataggcggtg
    18661 gtaccacaga agtcgcaatt atttcactaa gtggaatcgt ttatcatcaa tcagtacgta
    18721 ttggtggcga taaatttgat gacgcaatcg tgtcctacgt acgccgtaat tatggtactc
    18781 tcatcggaga aacaactgct gaacgtatta aacatgaaat tggttcggct ttcccaagcc
    18841 gggatttatt tgagatcgag gtacgaggta gaaatcttgc agaaggagta ccacgtagct
    18901 ttactttaac aagcgctgaa atcctggaag cactacagga acctctatca gggatagttg
    18961 gtgcggttcg agctgctttg gagctagctc ctcctgagtt ggctgcagat attgctgaaa
    19021 gaggtatggt tttaacaggc ggaggcgctc tgttgaaaaa tatagacacc ttgttgatgg
    19081 aagaaactgg attacccgta ttaatagctg aagatccatt aacctgcgtt gcgcgtggtg
    19141 gtggtaaagc tttagaaacc atggatttgc gcggcggtga tttcctctca acagaataat
    19201 aaacacaata gattatttgc taagggcgga cacagttctc tgggatttgt gtttgccctt
    19261 gctttttcta ttctcctgat gttttctgat tatcattatc gatacctgga tttcgttcgt
    19321 agcggttttt cactaatagt ttctcccttg caatatgcgg tagattatcc tgttcgagtc
    19381 atcggctgga ttcagtcgtt ggttagtgcc aaaaaggcac tgatagatga aaatatgcgt
    19441 ttaaaataca agcaaacaat gcttgaagct gaattgcaaa aattaattgt tatccaaaga
    19501 gagaattcgc aattaaaaga attattattg acttcatcca aggctgatat gagagtcatg
    19561 gctgcccaga tactcgctgt tgatacaagt caggcaagac aagttgtcgt cttaaacaaa
    19621 ggcacacgtg atggcgtcta tgtgggacag ccagtgttgg atgccaaggg agtgatgggg
    19681 caggttattg atgtaggacc aatgacaagc actttattac tgatttcaga ttcaaaaagt
    19741 gctgtgccag taagaaacaa tcgaaccgga gaacgcgcaa tccttgtagg cactaatgat
    19801 attgaagaat tgtctttgat taatttaccg aagacttctt ctattcatcc aggtgatgtg
    19861 ctggtaacgt ccggtttagg ccgaagatat ccggagggct atcctgtagg acgcgttgag
    19921 gaagttaaga gtattcctgg cgaagatttt gtcaaagtca cagttagccc tgtcgcattg
    19981 ttgaatcgca acaggttggt gttattgatt tgggctgata gtgagcaaga ggaattaact
    20041 gctcaaatta atgagcgatt gaatgctgag gagtctacag catgagcgtg cttcacattc
    20101 gtttaggatt ggggtttctc gtggcacttg ctttatcaat actgccgatg cctgagttaa
    20161 tttcaatttt tcgacctcct tgg
//
LOCUS       DACVWI010000040        20071 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.040, whole genome shotgun sequence.
ACCESSION   DACVWI010000040 DACVWI010000000
VERSION     DACVWI010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 20071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20071
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.040"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..208
                     /locus_tag="JBH85_05455"
     CDS             <1..208
                     /locus_tag="JBH85_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAU0945645.1"
                     /translation="IPIIPRKKNSKTGNAEVDWGLYKYRHLVENIFARLKQFRAIATR
                     YDKLKRNYASTLAMAPYMLAQHLI"
     gene            172..423
                     /locus_tag="JBH85_05460"
                     /pseudo
     CDS             172..423
                     /locus_tag="JBH85_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094533.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
     gene            complement(497..775)
                     /locus_tag="JBH85_05465"
     CDS             complement(497..775)
                     /locus_tag="JBH85_05465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945646.1"
                     /translation="MSISMITEIETLLKKAGFTYVGNGRGLGEFEKYENHLYHKNVYG
                     SIQQIQLAMDRENDTVRPVFSKNVPIELRDSIYELMKNPSEKNSLTFN"
     gene            complement(860..1345)
                     /locus_tag="JBH85_05470"
     CDS             complement(860..1345)
                     /locus_tag="JBH85_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945647.1"
                     /translation="MNRFIRFLLLLLITCSSGSPYLYAANKNNDFVLFEKIFTDWTLA
                     FNQKKLAPTCALFSKSLIANYQGAPQKNYTSICHGFKKIFQQTRKNYQYHFKLKQVYR
                     SGHLAVARITWYLQIFEQGKLISETQDEGLDVFLKDAQNQWKIINFIGYPVPGNLDEK
                     H"
     gene            1492..2106
                     /gene="mavI"
                     /locus_tag="JBH85_05475"
     CDS             1492..2106
                     /gene="mavI"
                     /locus_tag="JBH85_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavI"
                     /protein_id="HAU0945648.1"
                     /translation="MSSVKLCFALFRLYCYWRKLSMGLSAQQKTAIKSYFESNYNLFF
                     GIPTERKEGDLTPNEHVMVLQYLRFYLLKLPIECLEEELVNKQINGDDTVGILLEDFL
                     GNTLSPMNPDAYFHSQKNFIQMGNAEDPAKPEDIIQYLIEVIENMSQQMDHGYLKKES
                     DPRIEKSNSSYASKALKWGLFGGAALAITYAVSKLSDKSHTNSL"
     gene            2333..2890
                     /locus_tag="JBH85_05480"
     CDS             2333..2890
                     /locus_tag="JBH85_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2443 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945649.1"
                     /translation="MIRKSEMIRHFFIVLFFFVGFMNQASALPWFENENDLRNNNKLR
                     YRAHDEIKKNQIDFSGRWSGQCDSNPAVDLTIKHTREHISISYGFMEEKYIPGEVRAE
                     SSSRLSLSESGSTTVKWNQDNTALIFINYHLFINQSGSLNVFFSKVSMALEQEQLVVK
                     GQHFQTGNTLDDIKQETISCIYDRK"
     gene            complement(3014..3424)
                     /locus_tag="JBH85_05485"
     CDS             complement(3014..3424)
                     /locus_tag="JBH85_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAU0945650.1"
                     /translation="MKPLIPYLLFNGTCREAMTFYQNCFGGELELMTYGDSPEGACDK
                     KADKNDIMHACLRQGGFTLMASDWPGGEAKQGNNVHLNIDCSTKSEIEALFKKLSQEG
                     TVVQALADTFWGAHFGMLIDRYNIHWMLNYSLKQ"
     gene            complement(3525..3998)
                     /locus_tag="JBH85_05490"
     CDS             complement(3525..3998)
                     /locus_tag="JBH85_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAU0945651.1"
                     /translation="MQKITPCLWFNDKAEEAVTYYISIFKNGSIEKITYYGKEGVEFH
                     KKPAGSVMTILFNLNGQQYVALNGGPEFRFNESISLMVNCDTQDELDYFWKELSADGE
                     EGPCGWLKDKFGLSWQIVPDILAELLSDHQKSEKVMRVLLQMKKLDIAKLKAAAE"
     gene            complement(4036..5052)
                     /locus_tag="JBH85_05495"
     CDS             complement(4036..5052)
                     /locus_tag="JBH85_05495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HAU0945652.1"
                     /translation="MLRQYSKNINKLLIYKELIMGILIDGIWHDENNINTDKEGRFVR
                     AESGFRQHITANGESGFKAEPDRYHLYLSYACPWACRTLIMRKLKGLEKIISVSFSDP
                     VMGKNGWSYGESGNETADHINHIHYLKELYLVARKDYTGRVTVPVLWDKKKKTIVNNE
                     SSEIMRMLNSEFNAFSSTDHDYYPKQWRQKIDEINQLVYENINNGVYKCGFAKSQKAY
                     EEAFDALFNTLNQIENLLATQRYLLGEQLTEADWRLFTTLIRFDAVYHGHFKCNLQRI
                     ADYPHLSNYLRELYHFPGIKETVNFNHIKQHYYRSHLSINPTGIVPKGPKLNLDEPHN
                     RYEF"
     gene            5144..5695
                     /locus_tag="JBH85_05500"
     CDS             5144..5695
                     /locus_tag="JBH85_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HAU0945653.1"
                     /translation="MFNVAVIVGSLRKESFNRKLAFALDKLQHPTFQLSHIKIDDIPL
                     YNQDFDNNLPDSVIRLKKEITEADAVLFVTPEYNRSIPGVLKNIIDWGTRPYGKNVWA
                     GKLMAAIGTSPGAIGTAVAQSHLRSIMVAIDGVCFGQPEIYLVYKDGLIDNNFSITME
                     STRNFLQGFLDRFAREIEKHKSI"
     gene            5962..7152
                     /locus_tag="JBH85_05505"
     CDS             5962..7152
                     /locus_tag="JBH85_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HAU0945654.1"
                     /translation="MNFIGWTERQSLFRLFPLIISISFAMDVFVPAIPEMSRYFNTDS
                     TTMQATLYLFMLTVALGQLLVGPLADRFGRRQMALSTALLFFAGSLISALAPSVPALI
                     FARIIQAAGACGTYLLCFIIVRDNFSTGTCARLFSILSGTNSMVASSAPVIGGLLLDM
                     TQDWHSGFYFLTLLGLLMTGIAFRYIPDYHYPKPELLQMRVHQVMRQIISNSDFRQYT
                     WVASASLLGLYLFCAQSPGILITQLYLSATEYGFWFGLNAMTVFVANMMAARLTYSHS
                     LESIVRWGLVLMTLSCFFMLALNLRQCSILSFMLPMLCLTVGIGISMGTATALALKDF
                     EQQAGVATALLGACQFGLAGLIGVLTAQWMPGPLSVAIPVLCFTAVGLARITKFSFRI
                     LSGS"
     gene            complement(7252..7440)
                     /locus_tag="JBH85_05510"
     CDS             complement(7252..7440)
                     /locus_tag="JBH85_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945655.1"
                     /translation="MRLIVSLLGKIILCIGCSYFFKAIMSNETSSRSFMSNILSLMGQ
                     DGNGINDVSFFSEITTKT"
     gene            complement(7511..7891)
                     /locus_tag="JBH85_05515"
     CDS             complement(7511..7891)
                     /locus_tag="JBH85_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945656.1"
                     /translation="MTRNSVKTVCIFLSIILYVIALCLPAAIIPDFERGIHQTHYGFE
                     ILITGWMGFLAWQPAWLANLLYLFSLLAYGSKNSYRFGITAFIFAMLSPFILVEKLLI
                     GFYVWLASFAILLYGNNLHEMTIE"
     gene            complement(7928..8971)
                     /locus_tag="JBH85_05520"
     CDS             complement(7928..8971)
                     /locus_tag="JBH85_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1311 domain-containing protein"
                     /protein_id="HAU0945657.1"
                     /translation="MITNNIRFNWIIFILLISLLNLANINELHADEAGEQSQFNLESY
                     SPQTKKLCQTVAHLSAPGQNQLDEASKASLKNCDALDLYYGFNTAPDYDKAFQCALMN
                     KDYNVLVMAYANGRGVKFNPDLAMHFACMMEDAAPAEMDGRIAHLAQIKQGNKKTSFD
                     ICDDITSGYMMGWCSSIDQRLQDAKRNKKINALVSQWTTQEQLLYQQVRKTAEVYIHD
                     HSMNEIDLSGTARSAFAINAQLGLNQSLFELLQKVDRCEAPLVTTKQYEELDRQLNSI
                     YKKLMADTTSFQYTTITKEGIKKTEIAWIKYRDAWIQLARVKCPKISAESWQALLIQD
                     RIKLLNEILELAE"
     gene            complement(8998..9492)
                     /locus_tag="JBH85_05525"
     CDS             complement(8998..9492)
                     /locus_tag="JBH85_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2434 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945658.1"
                     /translation="MTIMMNKDKHSLPAIAAEEIPPRTKPSIYPEPFASMMAGRQKHA
                     LGDFFGIKNFGVNLTRLAPGAQSALLHKHKLQEEFIFILKGQPTLVTETADIQLHPGM
                     CAGFTPNGEAHQLVNRTADEVVYLEIGDRTQGDEVNYPADDLAAVFGDDGQWHFMHKN
                     GMPY"
     gene            complement(9759..11519)
                     /gene="ceg30"
                     /locus_tag="JBH85_05530"
     CDS             complement(9759..11519)
                     /gene="ceg30"
                     /locus_tag="JBH85_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg30"
                     /protein_id="HAU0945659.1"
                     /translation="MDIHMTPLFPEKNTPLTIKQGPVDDCYLLVALDCIFNSGDEARQ
                     LLASKFTQTLLGLTVRIKRNNQSTRLDSQKMRGKYIHVYDRNTDEDVFFIGQQKLKEI
                     DNSKKGVETNSLAIKVLERISSYYYTGDWDHTNDSGSLTAHSIRQRHMETSTRFVGKL
                     LGIHAEDTEEMDAIIKLKLMNPKEAVYISFAYGEPDANGKIYDRHALRIDKVVPKING
                     GYDFILVNPWDNQKQETFSLEELEKRDCRFCTFSLNQQRHEITRILLKNPVEQGQYIF
                     ANPELFTLLLQMQKLSLLSDAKNIQACINLHKQMPYLPSLYNSLTSDEQKKLIQGMVG
                     TKGDKAKFIKHLIINTPRLDLIKTIFQKEPLENKTENMIVDLALEAKKKHSPARIVFE
                     DPEFFTLIMNRAIHHKATIRGCSQEQAKKLIESKIINFYFDNLGTDSLTRNARLCELF
                     AAKIFTKTSIESWFAARLSLTNVDLSQALRTLGFSDQRSGVMSAPVLKKQTALVAGQV
                     GFFPIHKSSPALVTNKTPAPIQELTAKKSSVPTLPSIVKKPSTPTPALLGNGLSIYTP
                     EKPSVKTLPPLKGVRLTSLP"
     gene            complement(11656..12315)
                     /locus_tag="JBH85_05535"
     CDS             complement(11656..12315)
                     /locus_tag="JBH85_05535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HAU0945660.1"
                     /translation="MGKYYHEYIGNYQGKYGKGSDVNRFFPTLGNHDWLARKTCLYQG
                     TLPYFSYFTLPGNQSYYDFVRGPIHFFALDSDSHEPDGSKEGSKQYQWLFEQVQQSKA
                     PFKIVYFHHAPLSSGKHSSNTSMQWNFAAMGIDVVMGGHDHHYERIERNGIVYYVNGA
                     GGAELYSYKKWVEGSKFFYSKHHGFMLIIALEHALKIQFINDDDEIKDEIVIQEKPGV
                     G"
     gene            complement(12349..12528)
                     /locus_tag="JBH85_05540"
     CDS             complement(12349..12528)
                     /locus_tag="JBH85_05540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HAU0945661.1"
                     /translation="MKILLFLVLVILTNPLMAKENLVFAVIGDYGANSLAEAKVASVL
                     KSKNPQFILTLGDNN"
     gene            complement(12663..13610)
                     /gene="mdcH"
                     /locus_tag="JBH85_05545"
     CDS             complement(12663..13610)
                     /gene="mdcH"
                     /locus_tag="JBH85_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase subunit epsilon"
                     /protein_id="HAU0945662.1"
                     /translation="MKILFLFAGQGYHADSLFDIFRTDKKTMNLLKIMSSAAEIDFLQ
                     NDLEMTNPHSVQSIIGAYQLTLFSRLLPLFTNHQVDLAGYSLGEISAFLGSINANHQD
                     SFKLFRYRTQLMTSIVNNNIFAEYDLLSVVGQFILEEIQPVIAKHNCYIAIINSIQHV
                     VIGGKISDLRHLITALSQYPISHAKFLGVYLPSHTDFYSDKSKQFQRFLDENYGFYSL
                     KYPVISPLELNKIYNARQERALLGQELCTTLQWHKVCALIGEYQYNLIIDLGPGDSMT
                     TILNKANTELFNTPLITASHYNSLKGLCNAIISLTSSYQ"
     gene            complement(13607..14449)
                     /gene="mdcB"
                     /locus_tag="JBH85_05550"
     CDS             complement(13607..14449)
                     /gene="mdcB"
                     /locus_tag="JBH85_05550"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase MdcB"
                     /protein_id="HAU0945663.1"
                     /translation="MQIFQHSLPNPYKIARYFAKTAVQALYDEVALYPKPGLVSFVDS
                     GAHQDMNGALFFRSLFGLRHYFYQVGLHTALGYSPKNLVTFGLNAEKTMLKITGGINT
                     HRGAIFALGILCTSICKLSVKYHAFSIEDLHYAIIDQWAQYLEKEHQNTDTHGTLVTK
                     KYAVHDAKQTAIEGYKPVFDTYNELLNMTHDQTFFGLLTYQRLLLTIDDINILYRTGP
                     EGLEFARYHVQQGICQNNREKSIQKAIELHQLFSKKNISPGGVADMLGLIYFLRHVFS
                     REAK"
     gene            complement(14421..15044)
                     /gene="mdcG"
                     /locus_tag="JBH85_05555"
     CDS             complement(14421..15044)
                     /gene="mdcG"
                     /locus_tag="JBH85_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase
                     holo-[acyl-carrier-protein] synthase"
                     /protein_id="HAU0945664.1"
                     /translation="MNYLRHTLCYLDKNTTTAILPAPAQIDILRYWLKCDYPLIVTRQ
                     SENIPSGQIQLAIPYFIPARNQKLRTSYVVDDSWVISTRALPSLQEIFPSLELDTSSK
                     IQVYGSYCWQHLTREQYVQPSSDLDVLISYDNQSLFNLSALQKYLQKTLNIDCIDGEI
                     RFPALGDCSWAELLQIHSSDSILFKTTKKVTLVKRESLYANFPALLA"
     gene            complement(15041..15760)
                     /gene="mdcE"
                     /locus_tag="JBH85_05560"
     CDS             complement(15041..15760)
                     /gene="mdcE"
                     /locus_tag="JBH85_05560"
                     /EC_number="4.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-independent malonate decarboxylase
                     subunit gamma"
                     /protein_id="HAU0945665.1"
                     /translation="MMPNEKITLKQLIDHCFDTTKTTIKQQIVFGAGKIENKNFNIVG
                     TVEDTSFGVDESIEMARCILDIIKNNNTDPIVLLTDVAGQKLAVRDEWLGMYAYFAHL
                     LKCLHLARQNGNKIITLIYNQAIGGSFIAFGMMADRIYALKNAKLAVMWLEGMSKVTK
                     IDIDVLRKISETSPVFAPGVENFKKLGGLHQVLDLDEVSQQLLLTLQEPNISHDNRAE
                     LGKQYGGRKEAYDIIKAIENL"
     gene            complement(15761..16972)
                     /gene="mdcD"
                     /locus_tag="JBH85_05565"
     CDS             complement(15761..16972)
                     /gene="mdcD"
                     /locus_tag="JBH85_05565"
                     /EC_number="4.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-independent malonate decarboxylase
                     subunit beta"
                     /protein_id="HAU0945666.1"
                     /translation="MVDLFMDKYQYTFSLPKKLQISPMIKVGVAGSGNLEVIIKPNSN
                     FDKTDIIVNTVISGFRNTWDAVIERFVEDYPYGGLSITLNDAGATPPVVSLRLRQAME
                     TYQTGYHKKDSYTEAAARNRIYSLVDENSFTEFLLDKDTPSPTLPQLNMQVETDDGVI
                     IGIAKMNGIDIAIASQQKDFIGGSVGEIHGAKINGLIKYAIKHQLPAIIFLIDSGGVR
                     LQEANVGEIEISEIIRSILDARSAGIKTIGVICGNNGAFGGMGIISGTLDYLIVNQGA
                     RIGISGAEVIQAVKGVEVFDSSNRPLVWRVYGGRTRFLKDDVQGYTTNKTMDIRQEIK
                     TALKTLATTPSLSLNSILAEHEQLQKRITSAKNCREEGEWLKNNRPELYQQDIFSVSD
                     QQFLELTNKGK"
     gene            complement(16966..18612)
                     /gene="mdcA"
                     /locus_tag="JBH85_05570"
     CDS             complement(16966..18612)
                     /gene="mdcA"
                     /locus_tag="JBH85_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase subunit alpha"
                     /protein_id="HAU0945667.1"
                     /translation="MDWNKNLKDYESRLIKIKPFFKKGKIVSEKNIVTLLETAIKPYD
                     KVCLEGDNQKQADFLARCLCSVNPQKIYGLHMLQSAVTLSEHLDLFERGIAEKIDFAF
                     AGPQSTRLAIMIQRNQVKIGNIHTYNELYARYVMDLAPNVALISVEKADYHGNLYTGA
                     NTEETPSIVEATAFKNGLVIVQANEIVRKLPRIDIPGDWVDAIVKAPSPSYIEPLFTR
                     DPALIDEVKILMAMMVIKGIYAPYQVNRLNHGVGFNTCAIELILPTYAQSLGLKGKIC
                     KHWMVNPLPTLIPAIEAGFIESIFCVGGEVGMNEFIRSKPDIFFTGRDGSLRSNRLYG
                     QLAGHYGCDVFIGATLQMDPQANSSTATKGRIAGFGGAPNMGCDTLGRRHSSYAWLKA
                     GQEKNSHNPVAMPRGRKLVIQMVETFQGAGKPTFVEKLDAWELQKEMQADLPPIMIYG
                     DDISHVVTEEGIANLLLCKNSEEREQAIRGIAGYTPVGLKRDKAIVDELRHRGIIQRP
                     EDLNISLKEADRDLLAAKNIHDLVEISNGLYSPPNKFRNW"
     gene            18895..19701
                     /gene="mavH"
                     /locus_tag="JBH85_05575"
     CDS             18895..19701
                     /gene="mavH"
                     /locus_tag="JBH85_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavH"
                     /protein_id="HAU0945668.1"
                     /translation="MDMREKYTGRSEPIINKPSDIPKGLVAKRKAELLLAKLEEAIKS
                     QESLNRESESHAKEDNSESLKPRLTHPTSERPKINHRPPSSFSYTNSESTLFISPKEE
                     KLEREEPSLSISSDKKKVVAKSSTSIWTELIAALSRAVDNYSHKRMEGTTPSEAYGWF
                     SWLRHGKAGEDKAGELASEARGTSTVDSLLTLLHHFFADSNTRYNNHSLAPYVMDELN
                     KLLIQYALKPFILSLGTQYDLNSWVHIKNQLSQLAGKEVSQERQSLVAPM"
BASE COUNT         5860 a         3715 c         3901 g         6595 t
ORIGIN      
        1 cattccaatt atccccagaa agaaaaactc taaaacaggt aatgctgaag ttgattgggg
       61 tttatataaa tatcgtcacc tagttgaaaa tatatttgcc agacttaaac agtttcgtgc
      121 tattgcaaca aggtacgata agttaaaacg gaattatgct tcaacgctag caatggcacc
      181 ctatatgttg gctcaacatc tgatttaatt aagtgggtct gggagcacaa aaataaagtg
      241 attccagggt ttacagcacg gtataatgta catatcttgg tctattatga agtgcatgaa
      301 acgtacatag aagctgctcg tcgtgagaaa cgtttcaaaa attggtgcag acagtggaag
      361 ttaaatttaa ttgaagagtt aaatccagaa tggcgcgatc tttatgaaga aatctgcagc
      421 tgattagatc tcatggatgc cgcgaacaag tcgcggcacg taggctttgg gagccaattg
      481 tcaacacacc ctaatgtcaa ttaaatgtta acgaattttt ttcagatggg tttttcataa
      541 gttcataaat actgtcacgt agctctattg gaacattttt tgaaaacacg ggtctcaccg
      601 tgtcattctc tctgtccata gccaattgga tctgttgtat tgagccataa acatttttat
      661 ggtagaggtg attttcatat ttttcaaatt cccccaagcc tctgccattc cctacatagg
      721 taaatcccgc cttttttagt aatgtttcaa tttcagtgat catgctaata ctcatcaaat
      781 aaatagggtg gcgattatat tgataaaata caacaagatc aatcaaggag catattacaa
      841 tttattatgc caccttgttt tagtgttttt catcgagatt accagggaca gggtatccta
      901 tgaaattaat aattttccat tgattttgtg catcttttag aaagacatct aatccttcat
      961 cttgcgtctc ggaaatgagt tttccttgct caaatatttg caagtaccag gtaattcttg
     1021 caaccgcgag atggcctgag cgatagacct gttttaattt aaaatgatat tggtaatttt
     1081 tccttgtttg ctgaaatatt tttttaaagc cgtgacaaat agacgtgtaa tttttttgcg
     1141 gagcaccctg ataattggca attaatgatt ttgaaaataa agcacaagtt ggtgccagtt
     1201 ttttttgatt aaatgccaaa gtccagtcag taaatatttt ttcaaataaa acaaaatcat
     1261 tatttttatt ggctgcataa agatagggag agcctgaaga acaggttatc aatagaagca
     1321 acaaaaaacg aatgaagcga ttcatattga ttcgtggaac ccaaagaaaa gattaactta
     1381 acaaatccct ccagacaatg acagcaaatt cttaatgttg tttttatttg attatttata
     1441 atttgcacat aaaattcatt gtaaggtcat catgaaagat ttaagatcac tctgtcttct
     1501 gttaagcttt gctttgcatt atttagactt tactgctatt ggaggaagct cagtatgggg
     1561 ttatcagctc agcaaaaaac ggccataaaa tcttacttcg aatccaatta taatctgttt
     1621 tttgggattc caactgaacg taaagaaggc gatttaacac ccaatgaaca tgtgatggta
     1681 ttgcaatacc tgcgatttta tttattaaag ttgcctattg agtgtttgga agaagagttg
     1741 gtgaacaaac aaatcaatgg tgatgatacg gtaggtattt tattagagga ttttctgggc
     1801 aacactcttt ctccaatgaa cccggatgct tattttcata gtcaaaaaaa ttttatccag
     1861 atgggtaatg ctgaagatcc tgcaaagcca gaagatatta ttcagtattt aatagaagtc
     1921 attgagaata tgtcgcaaca aatggatcat ggttatttaa aaaaagaaag tgatcccaga
     1981 atagaaaaga gcaacagttc ttatgcgtcg aaagcactaa agtggggcct atttggagga
     2041 gctgctttag ctataacata tgctgtcagt aaattgtctg ataaaagcca taccaatagt
     2101 ctatgaaagc gacaatattc ggtttcgggg taacggaata tcaatttcca gcggatttct
     2161 cgaagtacgt cttataccaa agcaaaacca tgctatgttg taagagttgt gtcaaaagca
     2221 agaaccctga attgctattt tcccggatac tccttaaaaa gtagattgca atgatattat
     2281 aaattcgttt tctgcgagac agaaaaagta ttattctgta caaacctgcc tactgataag
     2341 gaagtcagaa atgataagac atttttttat agttttattc tttttcgtcg gttttatgaa
     2401 tcaggcttca gctcttccct ggtttgagaa tgagaatgat ttaagaaata ataacaaact
     2461 gagatatagg gctcatgatg aaatcaaaaa aaatcaaata gatttttctg gcaggtggag
     2521 cgggcaatgt gatagtaatc cggctgtgga cctaactatc aagcatactc gagaacacat
     2581 ttctatttcc tatggattta tggaagaaaa atatattccg ggtgaagttc gagcagagtc
     2641 atcctcacgc ttatctttat ctgaaagcgg cagcactaca gtgaaatgga atcaagataa
     2701 cacagcttta atttttatta attatcattt gtttatcaat caaagcggta gtttgaatgt
     2761 gttttttagt aaggtttcca tggcattgga gcaagagcaa ctggtagtca aaggacagca
     2821 ttttcaaaca ggaaatacct tggatgatat taaacaagaa actatctcat gtatttatga
     2881 ccgtaaataa tgacataaag taaatccctg tatgatgagc tttttgctgg tcacatggga
     2941 cttactttac tggttagtga aacgatctca attgattaaa aattgtcgat cagacttttt
     3001 tgtattttga tttctattgt ttcaaagaat aatttaacat ccagtgtata ttatacctat
     3061 caatcagcat accaaagtgc gcgccccaaa atgtatcggc gagtgcttgc actaccgttc
     3121 cttcctgact tagtttttta aacagggctt caatttctga ttttgtgctg caatcaatgt
     3181 tgagatgcac attattgcct tgctttgctt cgccacctgg ccaatcagat gccatcagag
     3241 tgaaaccacc ttgtcttaaa caagcatgca tgatgtcgtt tttatcggct tttttatcac
     3301 aagccccttc aggggaatca ccatacgtca ttagttctaa ttctcctcca aaacaattct
     3361 gataaaatgt cattgcttct cgacaggtac cgttgaaaag aaggtaaggt attagcggtt
     3421 tcatgtattc tccttgataa attgattatt gcaagactcg taactcccaa tttctttgct
     3481 aaaggtcatt tattgcttcg attttatgat ttttccttag catcttattc tgctgcagct
     3541 ttcagctttg cgatatccag ttttttcatt tgcagaagca ctctcatgac tttttctgac
     3601 ttttgatggt cactcagcaa ttcagccaag atatcgggaa ctatctgcca agataatcca
     3661 aatttgtctt tgagccagcc acaaggacct tcttctccat ctgctgagag ttccttccag
     3721 aagtaatcca actcgtcttg tgtatcgcaa ttgaccatca gtgagatgga ttcgttaaat
     3781 cgaaattcag ggccgccatt aagtgccacg tattgttgtc cattcaaatt gaagaggatt
     3841 gtcatcacac tgcctgctgg ttttttatgg aattcaactc cttctttgcc atagtaagta
     3901 attttttcaa tactcccatt tttgaaaatc gagatataat acgtcactgc ttcttcggct
     3961 ttatcattga accatagaca aggagtgatt ttttgcatgg ttttttatcc taatttctag
     4021 ctattgaaaa atttattaga attcatagcg gttatgtggt tcatccaaat ttaattttgg
     4081 gcccttggga acaattcccg taggattaat gcttaaatga cttcgataat aatgttgttt
     4141 gatatgatta aaatttacgg tttctttgat accaggaaaa tgataaagct ctcgtaaata
     4201 attggataaa tgcggatagt cggcaatccg ctgcaagttg catttgaagt gaccatgata
     4261 cacggcatcg aaccgaatta atgttgtaaa taaacgccag tcggcttctg ttagttgctc
     4321 tcctagcaaa tatcgctgtg ttgccaatag gttttctatt tgatttaagg tattaaataa
     4381 cgcatcaaat gcttcttcat aagctttttg ggatttagcg aagccgcatt tgtaaacacc
     4441 gttgttaata ttttcataga caagctgatt aatctcatca attttttggc gccattgttt
     4501 tggataatag tcatgatctg tagaactaaa ggcattaaat tcgctattca acatgcgcat
     4561 gatttctgat gattcattat tgactatcgt tttctttttt ttgtcccata aaacaggaac
     4621 tgttactcta ccggtataat cttttctggc aaccaaatac aactctttga gataatggat
     4681 atgattgatg tgatcggctg tttcattacc tgattcgccg taactccagc catttttacc
     4741 catgactgga tctgaaaaag aaacagaaat aattttttcc aatcctttca gttttctcat
     4801 gattaacgtt cggcatgccc agggacaagc ataggacagg tataaatgat atcgatcagg
     4861 ctctgcttta aacccactct ctccattcgc agtaatgtgc tgacggaaac ctgattcagc
     4921 acgaacaaaa cgtccttctt tgtctgtgtt tatattgttt tcatcgtgcc aaataccatc
     4981 aattagtatc cccattatta attccttata tatcaacaac ttattaatat tttttgaata
     5041 ctgacgcagc atgaatacgt cttgtttaat aactgctttt taatgcataa tcattgataa
     5101 atcgattaat tcattttgta tcaataaatt taaggaaaaa tttatgttca atgtagctgt
     5161 tattgtcgga agccttcgta aagaatcttt taatcgtaaa ttagcgtttg ctctggacaa
     5221 gcttcagcat cctacatttc agctatctca tattaaaata gatgatattc ctctttataa
     5281 ccaggatttt gataataatt tacctgactc agtcattcgg ttaaaaaaag aaattactga
     5341 ggcagatgct gttttatttg tgacacctga atataatcgt tcgatacccg gtgtattgaa
     5401 gaatattata gattggggga ccaggccata cggaaaaaat gtatgggcag gcaaactcat
     5461 ggcagctatt ggaacgagtc cgggagctat tggaaccgct gttgctcaat cgcatttgcg
     5521 aagcataatg gttgcaattg atggcgtttg ctttgggcag cctgaaattt atcttgttta
     5581 taaagatgga ctgattgata acaatttttc tattaccatg gagtctaccc gaaattttct
     5641 gcaaggattt ctggatcgtt ttgccaggga aattgaaaaa cataaatcaa tataagtatg
     5701 tcgactggtt acccaaagca atgtttctgg caattggtgc atttttctat gttcccgatc
     5761 attcattttg gctaaagcct cttgctcact tcgttattcc ttatgtttta cggtagtcca
     5821 gaatttttgc gtttggacta ccaataatta attgaataac atctgttgaa tcagcaattt
     5881 tataacattg agtgtaaatc tgttacaatt aagcgcagtt tatatttttc ataagtaata
     5941 ttttatcagg aacaccatta attgaatttt attggctgga cagaaagaca aagtcttttt
     6001 cgattatttc cactcattat cagcatttct tttgctatgg atgtttttgt gcccgcaatt
     6061 ccggaaatga gtcgttattt caatactgac agtacaacga tgcaagctac cctttatttg
     6121 tttatgctca ctgtagcttt gggtcagcta ttggttgggc ctttggccga tcgttttgga
     6181 cgaagacaga tggccttgag tacggcactt cttttttttg caggatcgtt gatctctgcg
     6241 ttagctccgt cagtaccggc attgattttt gcacgtatca ttcaggcagc tggtgcctgt
     6301 ggaacctatt tactatgctt tattatcgtt cgagataatt tttcaacggg cacctgtgcc
     6361 cgcttgttta gtatcctgtc tgggacgaat tcgatggttg ccagttctgc tccagttatt
     6421 gggggattat tgttggatat gacgcaagat tggcatagtg gattctactt tttaaccttg
     6481 cttgggttat taatgactgg catagccttc cgttacatcc ctgattatca ctatcccaaa
     6541 cccgagctgc tccagatgag ggtgcaccaa gtgatgaggc agataataag taactctgac
     6601 tttcgccaat acacatgggt tgcctcagcc agtttgctgg gattgtactt gttttgtgct
     6661 caatcaccag gtattttgat cacacaactg tacctgagtg cgactgaata tggtttctgg
     6721 tttggtttga atgcaatgac tgtgtttgtt gccaatatga tggccgcacg acttacttat
     6781 tctcactcat tggagagcat agtgcgttgg ggcttggttt taatgacact gtcatgcttt
     6841 tttatgctgg ctcttaatct tcgtcaatgc agcattttaa gttttatgct tcccatgctt
     6901 tgcttgactg tgggtattgg tattagcatg ggcacagcaa cagcgcttgc tttaaaggat
     6961 tttgaacagc aagctggcgt cgctaccgct ctgttgggtg cttgccagtt tggtctcgcg
     7021 ggcctgattg gtgttttgac agctcaatgg atgcccgggc cattaagtgt agctatcccc
     7081 gtactttgtt tcactgcagt gggattggct agaatcacca aattcagttt tagaatattg
     7141 agcggctctt aatcttgtcc tcaggcaatt ggccaaaaaa gaccgattat aggttatgct
     7201 gtaggtaaca ctgtgacatt tagtgttgtt tatcccgggt gtggttctgt attaagtttt
     7261 agtggtaatt tcactaaaaa aggaaacatc attgatacca tttccatctt gacccatcag
     7321 gctcaggata ttactcatga aggaccggga gctcgtttca ttggacatga tcgctttaaa
     7381 aaagtagctg catccaatac atagaatgat ttttccaagc aagcttacaa taagcctcat
     7441 gccaagacat gaggctttaa tgattttgta gatgttctat agacaaggaa tagacttatt
     7501 aatcttaaat ctactctata gtcatttcat gcaaattatt cccgtatagt aagatagcaa
     7561 aactggcaag ccatacgtaa aatccgatta ataatttttc tacaagaatg aatggcgaaa
     7621 gcatggcaaa aataaaagct gtaatgccaa agcgataact gtttttggat ccataggcca
     7681 gtaatgaaaa tagatacaaa aggtttgcca gccaagcagg ttgccatgct agaaaaccca
     7741 tccatcctgt gattaagatt tcaaatccat aatgtgtttg atgtatccct cgttcaaaat
     7801 caggtattat tgccgcgggt aagcacaagg caatgacata aaggattatc gataaaaaga
     7861 tacatactgt tttcactgaa tttcgagtca ttgattactc gctttatttg atagtcaata
     7921 acattaatta ttcagctaac tcaagaattt cattgagcaa tttaatgcgg tcttgaatta
     7981 agagcgcttg ccagctttct gcgctgatct tggggcattt cacacgagcc agttgaatcc
     8041 aggcatccct gtatttaatc caggctatct cggttttttt aataccttct ttggtaatag
     8101 tagtgtattg aaaggaggta gtatctgcca tcaacttttt atagatacta ttcaattgcc
     8161 tatccagttc ctcatattgc tttgttgtca caagaggagc ctcacatcga tctacctttt
     8221 gtaacagctc aaacaggctt tgattgagac ctaattgcgc attgatggca aatgcgcttc
     8281 tggctgttcc tgataaatca atttcattca tcgaatgatc atggatatac acttcggcag
     8341 tttttctaac ctgctggtat aatagttgtt cttgagtagt ccattggctg actagggcat
     8401 taattttttt attgcgtttt gcatcttgca aacgctgatc aatagaagag caccaaccca
     8461 tcatataccc actggtaatg tcatcacaaa tatcaaaaga agttttctta ttaccctgtt
     8521 ttatctgtgc gagatgggca atacgaccat ccatttccgc tggagcggca tcctccatca
     8581 tgcaggcaaa atgcatggca agatcaggat taaattttac tcctctacca ttggcgtaag
     8641 ccataaccag gacattataa tctttattca ttaatgcaca ttgaaaggct ttgtcataat
     8701 cgggggcggt attaaaacca taatagagat caagcgcatc acagtttttt agtgaggctt
     8761 tactggcttc atcaagctgg ttttggcctg gtgctgataa atgagctact gtttggcata
     8821 atttctttgt ttggggagaa taactctcta aattaaattg actttgctct ccagcttcat
     8881 ctgcatgaag ttcattaata ttggctaaat ttaataaact aattaataga ataaagataa
     8941 tccaattaaa tcttatgttg ttagttatca taattttttc tttctaatta tttgttatta
     9001 atacggcatt ccatttttat gcataaaatg ccactgccca tcatcaccaa acactgccgc
     9061 aagatcatcc gcaggataat ttacttcgtc gccctgggtt cgatctccta tttcaagata
     9121 aaccacttca tcagctgtcc gattgaccag ttgatgtgct tcgccatttg gagtaaatcc
     9181 agcacacatt ccgggatgta attgaatgtc agcagtttca gtgactaatg ttggttgccc
     9241 tttcaggata aaaatgaatt cttcctgtag tttatgttta tgcagcaaag cggattgtgc
     9301 cccaggagct aatcttgtta agttgacgcc aaaatttttt attccaaaaa aatcccctaa
     9361 tgcatgtttt tgacgaccag ccatcatgga tgcgaatggc tcaggataaa tagagggttt
     9421 ggttcgcggg gggatctctt ctgctgctat agcaggcaat gaatgtttgt ctttgttcat
     9481 catgatcgtc aatttgagtt ctatccttgc aatatttaat caatattagc ataaagtaag
     9541 ttatcttgaa tccctacttt caggaattct aaattatgga tttgttactg aatttagcga
     9601 aaccaaagca agattaatct taggcagcag aaagcaaagt atatagaaag attttgagtg
     9661 agttagattt ttctatgaat ctgtttccag atctttgctt taggagtttc aggttaaaaa
     9721 attaatttcc agccagcaca atagatatat tatgaattct aggggagtga tgtaaggcgc
     9781 actcctttta gaggagggag cgtttttaca gagggtttct ctggggtata aatggataat
     9841 ccgttcccta gaagtgctgg agttggtgta gaaggttttt ttactataga tggtagggta
     9901 ggaacagatg atttttttgc agtcagttcc tggattggag cgggagtttt atttgttacc
     9961 agcgccggtg aggatttatg gattgggaaa aatccaacct ggccagccac taaagctgtt
    10021 tgctttttta gaaccggtgc gctcattact ccagaacgtt gatcagaaaa tcccagagtt
    10081 cgtaatgctt gagacaaatc aacattagtc aaagaaagtc tggcagcaaa ccaggattca
    10141 atggatgttt ttgtgaaaat ctttgcagca aataattcac atagccttgc atttcgagtc
    10201 agactatctg ttcccaggtt atcaaaataa aaattaatta ttttggattc aatcaatttt
    10261 tttgcttgtt cctgactgca tccccgaatg gttgctttat gatgaatcgc tcgattcatg
    10321 attaaagtaa aaaattccgg atcttcgaaa acaatgcgtg ctggtgaatg tttctttttt
    10381 gcttcaagtg ccaggtcaac aatcatgttc tcagttttat tttcaagagg ttctttttga
    10441 aaaattgttt taatcaaatc cagtcgaggg gtgttaatta tcaggtgttt tataaatttt
    10501 gctttatcac cctttgtgcc taccattcct tgaatcagtt ttttttgttc gtcagatgtt
    10561 aatgaattgt atagggaggg caagtaaggc atttgtttgt gaagattaat acacgcttga
    10621 atgtttttag catcggataa caggcttagc ttttgcattt gcaagagcag ggtaaacaat
    10681 tccgggtttg caaaaatata ttgcccttgc tctaccggat tttttaataa aatacgtgta
    10741 atttcatgtc tctgttgatt gagactgaag gtacaaaaac ggcaatctcg tttttcaagt
    10801 tcttctagac tgaatgtttc ctgtttttga ttatcccatg gattgactaa aataaaatca
    10861 taaccaccat ttattttagg gaccacttta tctattctta acgcatgacg gtcataaatt
    10921 tttccattgg catctggctc accataggcg aagctgatat aaacggcttc tttggggttc
    10981 attaatttga gtttgatgat tgcatccatt tcttcagtat cttcagcatg aatacctaat
    11041 aatttgccga caaaacgggt ggaggtttcc atgtgtcttt gtcttatgct atgagctgtc
    11101 agacttccag agtcattggt atgatcccaa tctccagtgt aataatagga gctgattcgt
    11161 tctaaaactt taatagcgag tgaattggtt tctacccctt tttttgaatt atcaatttct
    11221 ttgagttttt gttggcctat aaaaaaaaca tcttcatctg tatttcgatc ataaacgtgg
    11281 atatatttgc cacgcatttt ctgagaatcc agtcgggtac tctgattatt tcgtttaatg
    11341 cggacggtta gcccaagtag agtttgcgta aactttgatg ctaacaattg acgagcttcg
    11401 tctccagagt taaaaataca atctaatgcg actagcaggt aacaatcatc gactgggcct
    11461 tgttttatag taaggggagt atttttttct ggaaacaaag gcgtcatatg gatgtccaat
    11521 aatacaaaaa gtatttaatc ttgccatttt atcaaagaaa tattatgtga atattaagga
    11581 aagctgaggc aagcatggtg taaacccatc attttcttat gttcaggact tacaaaaacc
    11641 ctcaaggtcc tgatgttatc caacacccgg tttttcttga atgactattt catccttgat
    11701 ttcatcatca tcattgatga attgaatttt cagggcatgc tcgagagcta ttatcagcat
    11761 gaatccatgg tgtttagagt agaaaaattt gcttccttcc acccattttt tataggaata
    11821 aagctctgct cctccggctc cattgacata ataaacaatt ccgttgcgtt cgatacgctc
    11881 gtagtgatga tcatgacctc ccatgaccac atcaataccc atagcggcaa aattccattg
    11941 catactggta ttggaactat gtttgccaga actcaacgga gcatgatgaa aatagactat
    12001 tttaaaggga gcttttgatt gttgtacctg ttcaaacaac cattgatatt gcttcgaacc
    12061 ttccttgctt ccatccggtt catgagaatc actatccaag gcaaaaaaat ggattgggcc
    12121 gcgaacaaaa tcataataac tttgatttcc aggaagggta aaatagctga aatagggtaa
    12181 tgttccctga tataaacaag tctttcgagc aagccaatca tgattaccca gagtagggaa
    12241 aaagcgattg acatcagaac ctttcccata ttttccctga taattgccta tgtattcgtg
    12301 ataatattta cccacattct tatcaatcgt tttccagcaa ccgtaagttt aattattatc
    12361 tccaagagta agaataaact ggggattttt ggacttgagg acactggcta ctttggcttc
    12421 cgctaaagaa ttggcaccgt agtctccaat gacagcaaag accaggtttt ccttggccat
    12481 cagcgggtta gtcaggataa ctaaaacaag aaacaacaag attttcaaag aagatccctg
    12541 tgcttgatgg agcgaagccg ctatggtaag agatctcttt ttaataaatc aatagaattg
    12601 aaagtacaag atgattaagt caatttaatt tttaaaccgg gcgaaattta atgaatatta
    12661 tctcattgat aagatgaggt aagcgatatt atggcgttac aaagtccttt taaactattg
    12721 taatgtgatg cagtaattag gggtgtattg aacaattctg tgtttgcttt gttcaagata
    12781 gtagtcatgg aatcgccagg gccgagatct ataatcaaat tatactgata ttcgccgatt
    12841 aaagcgcaaa ctttatgcca ttgaagtgtt gtacatagct cttggccaag caaagccctt
    12901 tcttgcctgg cattatatat tttatttaat tctagtgggc tgatgacagg gtattttaga
    12961 gaataaaaac cataattttc atccagaaat cgctggaatt gtttgctttt atcagagtaa
    13021 aaatccgtat gagaaggcag ataaactcct aaaaatttcg catgacttat agggtattgg
    13081 gaaagcgctg tgatcaagtg ccggagatct gaaatttttc cgccgatcac cacatgttgt
    13141 attgaattga taatagcaat atagcagtta tgttttgcaa taacaggttg aatttcttcc
    13201 aatataaatt gtccaacgac agacaacaaa tcgtattctg caaagatatt attattaact
    13261 atcgatgtca taagctgggt gcgatacctg aataatttaa aggaatcttg atgatttgca
    13321 ttaatgctcc ctaaaaaagc gctgatttcg cctaaactgt aaccagccag gtcaacttgg
    13381 tggtttgtga agagcggcag cagtcttgaa aaaagagtca actgataggc gccaataata
    13441 gattgaacag aatgcggatt ggtcatttca agatcatttt gtaagaagtc aatttcagct
    13501 gcagaagaca ttatctttag aaggttcatt gtctttttat cagttcgaaa aatatcaaac
    13561 aaactgtcag catgataacc ttgaccggca aaaagaaata atattttcat ttggcttctc
    13621 ttgagaaaac atgccgtaaa aaataaatta agcctaacat atctgctacg cccccgggac
    13681 ttatgttttt tttggaaaat aattgatgca gttcaatggc tttttgtatg gatttttccc
    13741 gattgttttg acatatgcct tgttgaacat gataacgggc aaattctaat ccctcgggac
    13801 cggtacgata aaggatattg atgtcgtcaa tggtcaataa taaacgttgg tatgtcaata
    13861 acccaaagaa tgtctgatcg tgagtcatgt tcaataattc attataagta tcgaatactg
    13921 gtttataccc ttcaatggca gtttgtttag catcatgtac agcatatttt ttcgttacta
    13981 atgtaccatg ggtatctgtg ttttggtgtt ccttttccag gtattgagcc cattgatcaa
    14041 taatcgcata atgcagatct tcaatagaaa aggcatgata ttttacactt aatttgcaaa
    14101 tcgaagtgca taatatccca agggcaaata tagctcctcg atgagtattg atccctccgg
    14161 taatctttag catggttttt tcggcattca agccaaatgt taccagattt ttaggtgaat
    14221 atcccaaggc agtatgcagg ccaacctggt aaaaataatg gcgcaaacca aagagactgc
    14281 gaaaaaacag ggctccattc atatcttgat gtgccccact atcaacaaaa ctgactaatc
    14341 cgggttttgg atataaggcc acttcatcat acagggcttg aactgctgtt tttgcaaaat
    14401 atctggcaat tttgtatgga ttaggcaagg agtgctggaa aatttgcata taggctctct
    14461 cttttcacta aagttacttt ttttgttgtt ttaaacaaaa tagaatcact ggagtggatt
    14521 tgtagcaatt ctgcccatga acagtcgcct aaagcaggaa agcgtatttc accgtctatg
    14581 caatcaatgt taagtgtttt ttgtaaatat ttttgcaatg ctgataagtt aaagagtgat
    14641 tgattgtcat aagatatcag cacatccaga tcagaagaag gctggacata ttgctctctg
    14701 gttaggtgtt gccagcagta ggagccataa acctggattt tgctgcttgt atcaagttct
    14761 aaagaaggga agatctcttg aagagaaggg agtgctcttg tgctaattac ccaagagtca
    14821 tccactacat agctggtgcg taatttttgg tttcgtgctg ggataaagta gggaatggcg
    14881 agttggattt gtccactggg gatattctca gactgcctgg ttactataag gggatagtca
    14941 cattttaacc aataccggag tatatcaatt tgtgcaggag cgggtaagat cgcagttgtc
    15001 gtatttttat caagatagca tagagtatgt ctgagatagt tcatagattt tctatggctt
    15061 ttataatgtc ataggcttct ttgcggccgc catattgttt gcctaattcg gcacgattat
    15121 catggctaat attgggttcc tgaagtgtca atagcaattg ctgagagact tcatccaaat
    15181 caagaacctg gtgtaaccct cctaattttt tgaagttttc tacgcctgga gcaaataccg
    15241 gggatgtctc gctgattttt cgtaacacat cgatatctat cttggtcact ttagacatac
    15301 cctctagcca catgactgcc aatttagcat ttttcaaagc atatatccta tctgccatca
    15361 tgccaaatgc gataaaactg ccgccaatgg cttgattgta tataagggta atgattttat
    15421 tgccattttg gcgtgccaaa tgcaaacact ttaataaatg agcaaagtat gcatacattc
    15481 ctagccattc atcacgtact gctaattttt gtccggctac atcagtcaac aggacaatag
    15541 gatctgtgtt gttatttttg attatatcca gaatacatcg ggccatttct atggattcgt
    15601 caactccgaa actggtatct tcaacggtgc caacaatgtt gaaatttttg ttttctattt
    15661 ttccggctcc aaaaacaatt tgctgtttaa ttgttgtttt tgtcgtgtca aagcaatgat
    15721 cgattaattg ttttaaagta attttttcat tgggcatcat ttatttccct ttattagtca
    15781 attccaggaa ttgctggtca gaaacactga atatgtcttg ctgatataat tcgggtcggt
    15841 tattttttaa ccactcacct tcctcacggc aatttttggc tgaggtaatg cgtttttgca
    15901 gttgttcatg ctctgccaga atagaattca gactaaggga cggggtagtg gcgagcgttt
    15961 taagggcagt ttttatctcc tgacgaatat ccatggtttt attggtggta tatccttgaa
    16021 catcgtcttt aagaaagcgg gttctaccac catagactcg ccagactaat ggacgattac
    16081 tgctatcaaa tacttcaact ccttttactg cctgaattac ttccgctcct gatatgccaa
    16141 tacgtgctcc ttgattaacg ataagataat caagagtgcc actgatgatc cccatgccac
    16201 caaaggcccc attattgcca caaataacgc ctatggtttt aatgccggct gagcgagcat
    16261 ccaggatgga gcgaatgatt tcagaaattt caatttcacc tacgttcgcc tcttgtaaac
    16321 ggactccacc actgtcaatc aaaaaaatga ttgcaggcag ttgatgttta attgcatact
    16381 tgattagacc attgattttg gcaccatgta tctctcctac tgagccgcca atgaaatctt
    16441 tttgttgcga tgcaatggct atatcaattc cattcatttt ggcgatacca atgatgaccc
    16501 catcgtctgt ttccacttgc atgtttaact gaggcagggt ggggctaggt gtgtctttat
    16561 cgagtaagaa ttctgtaaaa ctgttttcat cgactaacga ataaattcta ttgcgtgcgg
    16621 cggcttctgt gtagctatcc tttttatgat atcctgtttg gtaggtttcc atcgcctgac
    16681 gtaggcgtaa ggaaacgaca ggcggagtgg cccccgcatc gttaagagta atggatagcc
    16741 cgccataagg atagtcttca acaaagcgtt caatcactgc atcccaggta tttcggaaac
    16801 cagagattac agtatttaca ataatatcgg ttttatcaaa gttagagttt ggtttaataa
    16861 tcacttccaa attacctgaa ccggccactc caactttaat cataggagat atttggagtt
    16921 ttttgggcaa actgaatgtg tattgatatt tatccataaa taggtctacc aattcctgaa
    16981 tttgttagga ggactataaa gtccattcga aatttccact agatcatgga tgtttttggc
    17041 agcgagtaaa tcgcgatcag cttcttttaa tgaaatgttc aaatcttctg gtcgttgaat
    17101 gatgccacga tggcgcagtt catccactat tgctttatca cgtttcaaac ctaccggagt
    17161 ataaccggcg attcctcgga tagcttgttc acgctcctct gaatttttac ataataacag
    17221 attggctatc ccttcttcgg taacgacatg agagatgtca tcaccataaa tcataatggg
    17281 tgggaggtcg gcctgcattt ctttttgtag ttcccatgca tccagttttt ctacaaaagt
    17341 tggcttgcct gccccctgaa atgtttcaac catttgtatc acaagtttac gtcctcgagg
    17401 cattgctaca ggattatgag agtttttttc ttgtccggct ttaagccatg cgtaagagga
    17461 atgacgtctt cctaacgtat cacagcccat attgggtgcc ccgccaaatc cggcaattct
    17521 acctttggta gctgttgaac tgttggcttg cggatccatt tgaagggtcg cgccaataaa
    17581 tacatcacat ccataatgtc cggcaagttg cccgtacaga cggttcgaac gtaatgaacc
    17641 atctcgacca gtaaaaaaga tgtctggttt ggagcgaata aattcattca tccctacctc
    17701 acctcccaca caaaagatag actcgataaa tcccgcttcg attgcaggta ttaaagtagg
    17761 cagaggattg accatccaat gtttgcatat tttacctttt agacccagag actgggcata
    17821 agttggaaga atgagttcaa ttgcacaagt gttaaaacca accccatgat ttaatcgatt
    17881 aacttgataa ggagcgtaaa tgcctttaat caccatcatg gccatgagga tttttacttc
    17941 gtcaattagt gcgggatctc ttgtaaacaa gggttcaatg taggatggag atggggcttt
    18001 aacgatggca tcgacccagt ctcctggaat gtcaattctt gggagtttcc tgactatttc
    18061 attagcttgt acaatgacca agccattttt aaaagcagtt gcttcaacaa tgctcggtgt
    18121 ttcctccgta ttggcacctg tgtacagatt accatgataa tccgcttttt ctacagaaat
    18181 taaggccaca ttgggggcca aatccatcac ataacgtgca tacagctcat tgtaggtatg
    18241 tatattgcct atcttaacct gattacgctg gatcataatt gccaaacgtg ttgattgtgg
    18301 gccagcaaac gcaaaatcaa ttttttcagc gattcctcgt tcaaataagt caagatgttc
    18361 tgataaggta acagccgatt gcagcatatg taagccgtat attttttggg gatttacaga
    18421 acataggcaa cgtgccagaa aatcagcttg cttctgattg tctccttcca ggcaaacttt
    18481 gtcataaggt tttattgctg tttcaagaag ggtaactata tttttctcag aaacgatttt
    18541 acctttttta aaaaaaggct tgattttaat gagtctgctc tcataatcct tgagattttt
    18601 attccagtcc ataatttttt agtaatcaga tgagaactat ctaagtgata tgaaatgtta
    18661 atagtatagt agatattgac gcaattattt gattttatcc cctgcttttt tcttttggct
    18721 tgtgcaagat aagttagcct atgatatttc tctgtaactg aaaaatacta aatactttgt
    18781 ttcagtttat ttctgttttc tggttgaaca gaagagatta atttcttgaa agaaaacaat
    18841 atattgcatt aacattagtg aactgtttaa attcataaat cattacatag ggaagtggat
    18901 atgagagaaa aatataccgg tcgatcagag cctattatca ataaaccttc tgatattcct
    18961 aagggattgg ttgcaaaaag aaaagcagaa ttgctcttgg caaaattaga agaagctata
    19021 aaatcgcaag aatccttaaa tagagaatca gagagtcatg cgaaagagga caattccgag
    19081 tcactcaaac ccagattgac tcatccaacg agcgaacgtc caaaaatcaa ccatagaccc
    19141 ccttcttcat ttagttatac caactcagag agtactttgt ttatttctcc caaagaagaa
    19201 aagctcgaga gggaagagcc ttctttatcc atttcaagcg ataaaaaaaa agtagttgct
    19261 aaatcttcta catcaatttg gacggaactg attgctgcct tatcaagagc ggttgacaac
    19321 tatagtcata aaagaatgga aggaactact cccagtgaag cttatggctg gtttagctgg
    19381 ttgcgtcatg gcaaggcagg agaagataaa gcaggagagc ttgctagtga agcacgggga
    19441 accagtacgg ttgattcttt gttgaccttg cttcatcatt tcttcgcgga ctccaatacc
    19501 agatataaca atcattcatt ggccccttat gtaatggacg agctcaataa attattgatt
    19561 cagtatgctc ttaaaccgtt catactcagt ttaggaaccc aatatgatct taatagctgg
    19621 gtgcatatca aaaatcaatt aagtcaactg gcaggtaagg aagtgagtca agaaaggcaa
    19681 tctcttgttg cgcctatgtg attatcagga gtcctgcaca ggactccgta ttttttaatc
    19741 gcttgagttt aacagtttaa attttttttg aattgtttga tgattgcttg gctccaatct
    19801 ttgcgatgca gaaattgcag cgaatgccaa attaaatatg gttgtgtatg tactgccaaa
    19861 acaccgcctt aatatcctaa taaataaatt gtggggatac tcctgcctgt ttaagtaatc
    19921 gatataggta tatccaaaaa tctcttcgag ccggtttcct tcattttctg taaataattt
    19981 gattcattta aaacatcacc agttatttta acaattttta ggctccgtta tgggcgcatg
    20041 gagtttctta ttaagcagga tacatattgt t
//
LOCUS       DACVWI010000041        19864 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.041, whole genome shotgun sequence.
ACCESSION   DACVWI010000041 DACVWI010000000
VERSION     DACVWI010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 19864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19864
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.041"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..470
                     /locus_tag="JBH85_05580"
     CDS             <1..470
                     /locus_tag="JBH85_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HAU0945669.1"
                     /translation="VSAIFITDVYDKSGGSFLHFLKLNRSVPENVLIVNYIVDNIPYV
                     HYSQRYEIVCLDEKVCKLVIHYGFMETINIPRSLEKACNKNILPFKFNVDTATFMVEI
                     PNIMASKEKRSLSFYWQEKLFAFLMRNYSANLNIEFYKLPYNRTIAIGTYCIL"
     gene            582..1526
                     /locus_tag="JBH85_05585"
     CDS             582..1526
                     /locus_tag="JBH85_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HAU0945670.1"
                     /translation="MIMWFNNALMFQYKLDGGCDLNHSLTEEALKPCPPHARFTYGWV
                     PAFEQEMVHEVAGSTLICLGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQM
                     AEDLEFELLPKSFCVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEP
                     LNLTENLALRFAEWIHSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTL
                     LAQGMGTAEISLIWKERIQFTLTQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAAL
                     TLLSGELRELSNGLMKIFVNHAEMKSAQIEKVAEDCTI"
     gene            complement(1674..2447)
                     /locus_tag="JBH85_05590"
     CDS             complement(1674..2447)
                     /locus_tag="JBH85_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HAU0945671.1"
                     /translation="MKRIHVLFLIGLVVGISSCTKWGKDDEDNNPYKGMTAKQLYTAA
                     QTSLKKEEYATAAKQLEAMESMYPFSDYTESSQMQLIYAYYKDEDYPSAAATAERFIH
                     LYPRAKNVDYAYYMRGLANFQQTRGVFAKMLPMDESWRDPGTQTQALVDFATLIQKFP
                     DSKYKANALQRMIYLRNMFAQHELNVSLYYFKRKMYVAAIERASYLVKNYPQAPSAQK
                     ALVVMYEANKALGLNKAAEDAMAVYKATYHTSNMIRINS"
     gene            2613..2700
                     /locus_tag="JBH85_05595"
     tRNA            2613..2700
                     /locus_tag="JBH85_05595"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2647..2649,aa:Ser,seq:tga)
     gene            complement(2831..5218)
                     /locus_tag="JBH85_05600"
     CDS             complement(2831..5218)
                     /locus_tag="JBH85_05600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAU0945672.1"
                     /translation="MLTDAQIQHAINNLNILIAHYNSPISCFSFDNERVTRNWFFKSE
                     STHATALSNYLKKIIDEVSSDKVDKTNSLYSSLFISLQNFLHLQPNRVIEGLNFNLEN
                     SQYLKRKNLIIKRLEHFHIENQFRDDLKRHLLPEIQYDTCTGHYTSPDDDKAHQHGSE
                     AQRIFFSTQWERLKALCNWLLAKMGIHIFETARYKEHDYLDSEVYANDPAIEPGVSPQ
                     QSATHYWIGHASNLMTIPAHDSPLHVVTDPVEGDLAPFLYPRMTKEGSLIDGTGSKKL
                     PKIDIVVISHNHHDHVSQSTLKRLLKQQPKMVVPEGDESFFLGMGFTDVVGLKWWEQA
                     KITDFQGNELLRITAVPARHWSGRSLTDAHCSAFNGYVLHANQLDGDIYFAGDTALMD
                     DMLSQPIFEKFNIVTSIQPGGPDERREDMESTHQSSADAILMHFKILAAQYQKMKEKN
                     ESLSLDDFLIENQHLKTLYNHTATFKLGNLRLKDTYYSYQRMVAAFREDAQWRADHLP
                     KHEQKVYDHIQLLISNMVFKDNQQLSNRQIADLILGKVVIPKIGQRQPLYFKEKPIKT
                     ETFQYRNLITNRRALLEFDMLLQESIAESNEFFNIKRLILNLLRAYQNPWHAFFSRTH
                     LGVGNYEQDIRNCQSNSDLLAVLNHMERNLGKRNPHGHMQSLIYYAKWVIDFSNKYQH
                     ETLMKFKEYFACQQIRKLADQEIHHAGLIVGFGDRQAKQQRFKVLSNELADLPEDVAE
                     YRKAIDNWLATRVNDGQSTQQLLSENRSSVFAKKVTRGESTVLHIKTTLDLAVSS"
     gene            complement(5310..7202)
                     /gene="ravS"
                     /locus_tag="JBH85_05605"
     CDS             complement(5310..7202)
                     /gene="ravS"
                     /locus_tag="JBH85_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavS"
                     /protein_id="HAU0945673.1"
                     /translation="MCIEKILEPVIMSGIKKFNLTYQQVPKIFSLPESVFLSKDVELI
                     PEEVLKQTKTQKNIVAKTIEQIDKDLERTCYVDFDGLTVAQLKSDWLTVNPQGDLALS
                     EGVYPSFSQGDNTGAVIGEILQTKHFSLPLSEEDPKAFMEVTRNTTRICFSYKNSAGQ
                     PSGFSLVAAPNGDSEGNHKGWIISVIQNTVGNYKGRKVSVLASPNYVRSEAQSTVDMD
                     TPDAIERELKRVINNDKVASLIKGIFKEDGTLNADYIRQLASRIKGNRNIDDRDRKSA
                     QFNILIELAEQLDDEKLRHYINSIKADMAADIEFFKDGIYEQHLSELSNKISLSLSKM
                     PSVNKKTTEIGRILNNISERYAQIKMIEDAQRKNPELSHIFKAMAQKIKSDFHDIKFD
                     GTHHDNRNILLLSQFEVASVEQKIRNYYQTNPLVKQYFVDKDKANHHLQVELSRLSPP
                     KNEGFFSRNKDSFGFSIFMGLIVGVSAALFLTGVLAPIGVALIAVGAALITTGLVGSI
                     DIYVNEKEYANETSHYSHEVKCLRSAHREHLVRLEKNLHEQINLSDFLTPDKPEFLSG
                     IKVNKKKPLTPERVAHALWLQDKSARDTSVAKNRFSIWAAKQENLDFGIEEVESVIKQ
                     RYVMKS"
     gene            complement(7375..8199)
                     /gene="kdsA"
                     /locus_tag="JBH85_05610"
     CDS             complement(7375..8199)
                     /gene="kdsA"
                     /locus_tag="JBH85_05610"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HAU0945674.1"
                     /translation="MRLCGFEAGLDKPLFLIAGPCVIESEELALETAGYLKEMCSQLN
                     IPFIYKSSFDKANRSSISSYRGPGFEKGLSILEKVKSQIGVPVLTDVHEDTPLFEVSS
                     VVDVLQTPAFLCRQTNFIQKVAAMNKPVNIKKGQFLAPWEMKHVIAKAKAQGNEQIMA
                     CERGVSFGYNNLVSDMRSLVIMRETGCPVVYDATHSVQLPGGNNGVSGGQREFIPALA
                     RAAVAVGISGLFMETHPDPDKALSDGPNSWPLDKMKQLLESLKAADEVYKKYSTDF"
     gene            complement(8196..9833)
                     /locus_tag="JBH85_05615"
     CDS             complement(8196..9833)
                     /locus_tag="JBH85_05615"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HAU0945675.1"
                     /translation="MTKYIFITGGVVSSLGKGIAAASLAAILEARGLRVTLIKLDPYI
                     NVDPGTMSPFQHGEVFVTNDGAETDLDLGHYERFVKTTMTKRNNFTSGKIYENVIKKE
                     RRGDYLGGTVQVIPHITNEIKRCIKLGADAFDVAMVEIGGTVGDIESLPFLEAIRQMR
                     IELGSQRAIFIHLTLVPYIATSGETKTKPTQHSVKELRSIGIQPDVLICRSEKPLSMA
                     DRAKIALFTNVEKEAVISLEDANSIYQIPMILHAQHLDEIVVKKLSLEAKQADLSEWQ
                     RVVDMQAVQTMTVKIAMVGKYTELNDAYKSINEALLHAGIHTETKVEIIYFDAEMIEK
                     HGALLLESIDAILVPGGFGERGVEGKIKAIQYAREHKVPFLGICLGMQTAVIEFARNV
                     VGLTGANSTEFNKETLYPVLGLISEWMDADGSKQIRDENTDLGGTMRLGGQYCHLAEG
                     TLARKVYGKPQIIERHRHRYEVNNKYVDSLVKHGLIISGRSADNSLVEMIELADHPWF
                     LACQFHPEFTSNPRDSHPLFKEFVLAARIHHQEKDKK"
     gene            complement(9959..10426)
                     /locus_tag="JBH85_05620"
     CDS             complement(9959..10426)
                     /locus_tag="JBH85_05620"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HAU0945676.1"
                     /translation="MREIKTIVSDGVTFPIALVVSTFNELITSALKKGALDRLTELGF
                     KSEDITLVEVPGAVEIPFVAQLLAKKQKVEVIVALGAVIRGETSHYDYVCDQVSQGCQ
                     RVMLDYNIPVIFGVLTTENDEQALARVGGTHGHKGRDAIDCAVSMRSIKQQLQ"
     gene            complement(10434..11642)
                     /locus_tag="JBH85_05625"
     CDS             complement(10434..11642)
                     /locus_tag="JBH85_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HAU0945677.1"
                     /translation="MKHSLATIEEAVATLKAGKMIILMDDEDRENEGDLVIAAEHATP
                     EAINFMSRLGCGLICLPMAEELIDKLQLPMMARHNKSPYGTAFTVSIEAANGVSTGIS
                     ARDRARTIQVAIDPKSGPSDIISPGHVFPLRARKRGVLERPGQTEGSVDLVKLAGLTP
                     AAVICEIINEDGTMSRRDELALFSKKHQIPLVTIKDLIQYRVRHENLIHPVATTQIPL
                     EENGVFTMTVFENQIDSCEHFVLVKPPLYGNQVPLVRIHSECITGDVFGSRKCDCGKQ
                     LELSLSQIGAEGGILIYLRQEGRGIGLANKLKAYALQEQGFDTVDANLELGLPADDRD
                     YAVAYQILKYLGVEALRLLTNNPLKIASLERYGMKITQRIPLEIEPSRENHSYLKTKK
                     IKLGHLLAID"
     gene            complement(11639..12253)
                     /locus_tag="JBH85_05630"
     CDS             complement(11639..12253)
                     /locus_tag="JBH85_05630"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HAU0945678.1"
                     /translation="MFTGLIENTGKVLMNRQGENSSRLVVSSSYQDLKPGESIAVNGV
                     CLTLLPADFPELCFDISPETLHVTTLSKLSSGDMVNLERAMLASTRFGGHYVSGHVDT
                     RAKVKSIRAVNEFIAMDLDGFIPEHNHYLIPKGSITVDGVSLTINTVSEQTVGLMLVP
                     HTLSMTNLGSLRVGQQVNIEFDYLTRIVAHQLQIIGKLNLEEVS"
     gene            complement(12238..13311)
                     /gene="ribD"
                     /locus_tag="JBH85_05635"
     CDS             complement(12238..13311)
                     /gene="ribD"
                     /locus_tag="JBH85_05635"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HAU0945679.1"
                     /translation="MHEQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRG
                     AGTPHAEQLLLSQIPPQTPGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDP
                     NPIVAKSNSSEKLREHGIQVRHIPVKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKI
                     GKSEGARVVLSNALCEQFTHQMRAASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAI
                     VDRNLSLSDDTIIFSTAKHCHIYHQPQANQAKTYPNSTHYAMPLQNGLMDLEAIITHL
                     GQLGYHDVWVEAGGAIFSALHSKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEKAHTV
                     SWQAMGDNMIACLDWQEDECLPD"
     gene            13362..14810
                     /locus_tag="JBH85_05640"
     CDS             13362..14810
                     /locus_tag="JBH85_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HAU0945680.1"
                     /translation="MSSLMIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSL
                     SPYTTKELEQLEREFIQLINQSDSVERNPLASQYINSIGKKLAHYGRIKTPYFFIVKS
                     KEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVP
                     LLASILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGF
                     NPQGMAAFFNKMQENSRYYYTANIPAILRTHPLDADRIAEAENRTSRLPKKHYTDSLD
                     YALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALLNNNNFQKAAEKLN
                     PLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTAN
                     QPQKATAVLLKGSRQYKEDLPLCRELARAQAESHQKSYAYFTQAQCLLLEGQKRGAIA
                     QLKVAQKLAKRDAYLSARISAKIDEIKFMVEN"
     gene            15089..16024
                     /locus_tag="JBH85_05645"
     CDS             15089..16024
                     /locus_tag="JBH85_05645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0945681.1"
                     /translation="MNEIQEFLRQKLNSPLPISRPQLAKLPMGTMEFVTYGNGKPVLI
                     IHGGGGGYDQAVLLFKRYIPDGYQMICPSRPGYLGTPIDTGQTAEEQADALAGLLDYL
                     NITSAVIVAISAGGLSLYPFAIRHPKKTKAIIAIDAIAGEYLMPEQSNKLAQALFMTD
                     FGLWVAKKSMIYFPKSFIKNLIKLEGYLDPVRVDDRVKEILNCRERLEIIAELMNSMA
                     DYKARKTGTVNDMAEGVKTSWYDFSKINCPALIIHGTHDADVKFYNGVFAYERLASKE
                     KERFWIEYGTHLGFFFAHQAREVQQKFQEFIIKHG"
     gene            complement(16463..16708)
                     /locus_tag="JBH85_05650"
     CDS             complement(16463..16708)
                     /locus_tag="JBH85_05650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945682.1"
                     /translation="MNSWNSVVFLKTKNAWSDSAAIAKMNGVQSLWSTSGDWDWCIKL
                     DSKHSSPEETALFVKNLRNADWVAETKTSWWKEVAVK"
     gene            complement(17135..18463)
                     /locus_tag="JBH85_05655"
     CDS             complement(17135..18463)
                     /locus_tag="JBH85_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HAU0945683.1"
                     /translation="MIKSKVLVIDDEPDIRELLTLTLSRMGLICDAVSDFKQGIEHIK
                     QNYYSLVLTDMRLPDGDGIEIVKFIQKYKPQLPVAVITAYGNVEGAVNTLKAGAFDYV
                     SKPVDLKMLRELVKTALSMQNPSTESPDEGLLVGESLIMQQLRESIHKLARSQAPVFI
                     QGDSGVGKELVAQLIHANGPRKDKPFIPVNCGAIPGELMESEFFGHKKGSFTGAISDK
                     TGLFVAAHGGTLFLDEIAELPLAMQVKLLRAIQEKAIKPIGELYEIPVDVRILSASHK
                     NLIEEINAGRFRQDLYYRINVIELRVPTLMERLSDIPCLTEAILKKLSKNQNRNLVKI
                     NPSCFEILSRYHFPGNVRELENILERAMAMCEGEVIEPSDLHLPRTTITPAVAVPSTS
                     TNLNGYLQDQEKELILDALEKTKWNRTAAAQLLGVSFRTLRYRLKKLGLD"
     gene            complement(18460..>19864)
                     /locus_tag="JBH85_05660"
     CDS             complement(18460..>19864)
                     /locus_tag="JBH85_05660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HAU0945684.1"
                     /translation="IFLYFWHRKILSFDKQVFLSGTIDVIAISSMLGLIGNLESGYGI
                     LLNVTIAALSILVPGRLAIYFASLASCLLLCGNVLQFFIYNQKDLSTFFYSGIYGAGF
                     FATAITAWYLSNWVRMSESLARHRSYELAGMQRLNEYIVERLHSGIIYVAEGKRIRLM
                     NTAAREFFNLSKHHAIQKLDQLSDSLVSKFDDFLLKTTNNERTAQTIIEDPYLRVHFF
                     STSVGHKSEVLIILEDMTYIAQQAQQLKLAALGRFSASIAHELRNPLGAIAHAIQLFG
                     DNEDLNEENTRLKQLIMNNCERMNRVIKNVLQLSRRQKSQPQVNELATFLEHFKQDFT
                     HHNPCNLTIKLPANKSLSVVFDKSQLEQILVILCENSIQHGRDHEGNVNIVIAAKSSS
                     NKITLTVCDSGPGVPPEHRDNIFEPFFTTLRGGTGMGLFIARDLCEINQARLNLLNSN
                     KGSCFAITVNPSDELLI"
BASE COUNT         6112 a         4094 c         3515 g         6143 t
ORIGIN      
        1 gtgtttcggc gatttttatt actgatgttt atgacaaaag tggtggtagc tttctccatt
       61 ttcttaaact aaaccgctca gtaccggaaa atgtcttaat tgtaaattat attgttgata
      121 acattcctta tgttcattat agccagcgct atgaaattgt ttgccttgat gaaaaagtat
      181 gtaaactagt aatacattat ggctttatgg aaacaattaa tatcccaaga agtctggaaa
      241 aagcttgcaa taaaaatata cttcctttta agttcaatgt tgacacagca acatttatgg
      301 ttgaaatacc caatattatg gcttcgaaag aaaaaagatc actaagtttt tattggcaag
      361 aaaaactgtt tgctttcttg atgcgcaatt actcagcgaa tttaaatatt gaattctata
      421 aattacctta caatagaact atagcaatag gtacctattg tattttatga gttttggtca
      481 gggtctgttg gcagtttgct ctcttgcgtc gaaatggcaa cagcccctaa tcatcgcagt
      541 aaaatgctat ccgtgataac atcgcaaatt tattttaagg actgattatg tggttcaata
      601 atgcactgat gtttcaatac aaactagacg gtggatgtga tttaaaccat tctttgactg
      661 aagaagcgct taagccctgc cccccccatg ctcgctttac ttatggctgg gttcctgcgt
      721 ttgagcagga aatggtgcat gaagtagctg gtagcacgct tatttgcctg ggtaaagaag
      781 agcgaattct ccctagagga gtcattaata aaatgctcaa agaaaaaatt cagcaaatag
      841 aagcagccca gggtcgaccg gtaaaacgcg cagaaaaggc tcaaatggct gaggatcttg
      901 aatttgaact attgcctaaa tccttctgtg ttcaaaaaaa acttttagcg attcttgata
      961 gtgtcagtca gagattaatt attaatactt caagcaacaa tcaggcgtct cagttgactt
     1021 cttttttgcg taaatcaatc cctggtattg tgatagaacc attaaacctt accgaaaatc
     1081 ttgccttgcg attcgcagaa tggatccatt ctccagcaac tctacctgat gactttcaat
     1141 tagcctccga ttgtttactc ttttctcttg aagatgaaaa aaaacgagtc cattgtaaag
     1201 gctacgaatt acctgccgaa gaaatcctga ctctattggc tcaaggtatg gggactgcag
     1261 aaatctcatt aatttggaaa gagcggattc agttcacctt gacgcaggat tttactttta
     1321 aaaaactgaa aagccttgat tatctgatcg acgattttaa tgagatcaga caattggaag
     1381 aagagtatca aagacaagat gccgcgttga ccttattaag tggggagtta agagaactta
     1441 gtaacggatt aatgaagata tttgttaatc atgcagaaat gaaatcggct caaattgaaa
     1501 aagttgcaga agattgcaca atataaagtc gtatcatttt aacccgtaac ctatcgaggg
     1561 agctcctttg ctaacagagc tccctctcat cttgattcaa gagaaaacga gtggattgca
     1621 catcacttgc ttaacccagc tgacagaata aactctataa atttttgtac tcatcaagaa
     1681 ttaattctga tcatattaga agtatgataa gtagccttgt aaacagccat agcatcctcc
     1741 gctgccttgt taagccctaa tgctttattg gcttcgtaca ttaccactaa agccttttga
     1801 gcgctgggag cttgaggata gtttttcact agataactgg cccgttcaat ggcagccaca
     1861 tacattttac gtttgaagta gtaaagagag acattgagtt cgtgctgagc aaacatattt
     1921 cgtagataaa tcatacgttg caaagcattg gctttatatt tgctgtcagg aaatttctga
     1981 attaaagtag caaagtcaac cagtgcttga gtttgtgttc cagggtccct ccaggattca
     2041 tccataggaa gcattttggc aaatacgcct cgtgtttgct ggaagttagc caaacctctc
     2101 atataatagg cataatcaac gttttttgcg cgtgggtaca gatgaataaa gcgctccgcc
     2161 gttgctgcag cagaaggata atcttcgtct ttataatagg cataaataag ctgcatttga
     2221 gagctttcag tatagtcact aaaaggatac atagactcca tggcttccaa ctgtttggca
     2281 gcagtagcat attcctcttt ttttaaagag gtttgtgccg cagtgtagag ctgtttagct
     2341 gtcatgcctt tatatgggtt attatcctca tcatcttttc cccatttagt acacgatgag
     2401 attccaacaa ctaacccaat aagaaataac acatgaattc gtttcataaa gcacacctat
     2461 caattatatc tgctgtattt ataagtacag caactggaaa atttgggaca ttatacctag
     2521 gaccagttaa tttgcgaaca acctattatt cttttattta tctataaaaa aacatttgca
     2581 aaatgatagg cgttcatata gtattctcga ccggagagat ggcagagcgg tcgattgcgg
     2641 cggtcttgaa aaccgttgaa gggcaacctt cccagggttc gaatccctgt ctctccgcca
     2701 gacaacatta ccatggtata tttccccgag acaaccaatt tcactttagc gttattctat
     2761 tcttcaagta caaaaagtaa gtgaatgaca tccaacccat taatacaaaa gactaaagtc
     2821 attgtatcta ttaacttgat actgccagat caagagttgt tttgatatgg agcacggtgc
     2881 tttctccacg ggttactttt tttgcaaaaa cagatgagcg attttcacta agcaattgtt
     2941 gggtagattg tccatcatta actcgtgtgg caagccaatt atcgatagct tttctatatt
     3001 ctgcaacatc ctcaggcaaa tcagccaatt cgtttgaaag tactttaaac cgctgttgct
     3061 tcgcttggcg atctccgaaa cccactataa ggccagcatg atgaatctct tgatcagcca
     3121 attttcttat ctgttggcaa gcaaaatatt ctttaaattt cattagagtt tcatgttgat
     3181 atttattgga aaaatcaatt acccatttag cataataaat caaactctgc atgtggccat
     3241 gtggatttct tttgcctaga tttctttcca tatggtttaa tacagcgagt aaatcgctat
     3301 tactctggca attgcggata tcttgctcgt aattacctac tccaagatgc gttcgggaaa
     3361 aaaaggcatg ccagggattt tgataggctc gcaacagatt taaaataagt cgtttgatat
     3421 taaagaattc attcgactca gcaatggatt cttgcagcaa catgtcaaac tcgagtaaag
     3481 cacgacgatt agtaatcaga ttacgatatt gaaatgtttc tgtctttatc ggtttttctt
     3541 taaaataaag tggttgtctt tgaccaattt tgggaataac taccttgccc agaatcagat
     3601 cggcaatttg ccgattacta agctgttgat tatctttgaa aaccatattg cttatcaaaa
     3661 gttgaatatg atcgtaaacc ttttgctcat gctttggtaa atgatcagct ctccattgag
     3721 catcttccct aaatgcagca accattctct gataactgta ataggtatct ttcagacgta
     3781 aatttcctaa tttgaaagta gcagtatggt tataaagagt tttaagatgt tgattttcaa
     3841 ttaaaaaatc atcaagagat aaactctcat tcttctcttt cattttttga tattgtgcag
     3901 ctaatatttt aaaatgcatc agaattgcat ccgcagaaga ttgatgagta gactccatgt
     3961 cttcacgccg ctcatctgga ccaccgggtt gaatagaggt aacgatattg aatttttcaa
     4021 aaatgggctg tgataacatg tcatccatta acgcggtatc cccagcaaaa taaatatctc
     4081 catctaattg atttgcatgc agcacatagc cattaaatgc tgagcaatga gcatcggtca
     4141 gcgatcgacc cgaccaatgc ctggcaggca ctgcagttat ccttaataat tcattccctt
     4201 ggaaatctgt aatctttgct tgttcccacc atttcaaccc tacaacatcg gtaaatccca
     4261 tgcctaaaaa gaatgattcg tcaccttccg gaactaccat cttgggttgc tgttttaata
     4321 ggcgcttcaa tgtggactga cttacatgat catggtgatt gtgagaaatc actactatat
     4381 caattttggg taatttttta ctgccagttc catcaattaa actcccttct tttgtcatac
     4441 gcgggtatag aaatggagcc aaatcacctt caacaggatc agtgactaca tgcaatggcg
     4501 aatcatgggc cggtatggtc attagatttg atgcatggcc aatccagtaa tgagtggctg
     4561 attgttgtgg gcttacccct ggttcaatcg cgggatcatt ggcatagacc tcactatcca
     4621 aatagtcatg ttctttataa cgtgcggttt caaaaatatg aatacccatt ttagccaata
     4681 accaattgca taaggctttt aatctttccc attgagtaga gaagaaaatt cgctgggctt
     4741 ctgagccatg ttgatgcgct ttatcatcgt ctggcgaggt ataatgccca gtgcacgtat
     4801 catattgaat ctcaggaaga agatgtcgtt tcagatcatc cctgaattga ttctcgatat
     4861 gaaaatgttc cagtctctta ataatcaagt ttttgcgttt caggtactga ctattctcta
     4921 aattaaaatt caagccttca attacccgat tcggttgtaa atgaaggaaa ttttgtaagc
     4981 taataaacaa actagaatat aaactattag tcttatctac tttgtcgctt gaaacttcat
     5041 cgataatttt ctttaaataa ttactcaggg cagtagcatg tgttgattca gatttgaaaa
     5101 accagttcct tgtaactcgc tcattgtcaa aagaaaagca ggatattggc gagttatagt
     5161 gtgcaataag tatattaaga ttattaatag cgtgttgaat ttgagcatca gttaacatat
     5221 ttttttaccg tattatccaa tcagctgatt cgtttgctat attttgccaa gagttataaa
     5281 tgtctgcttc attgaattct caatattttt tatgatttca tgacatatct ttgtttgatt
     5341 acgctttcca cttcctctat accaaaatcc aggttttcct gcttggcagc ccatatcgaa
     5401 aatctatttt ttgctactga agtatctcga gcacttttat cctgtagcca taaagcatgg
     5461 gccactctct ccggagtcag cggttttttc ttattgactt tgatgcctga taaaaactcc
     5521 ggcttatcag gagttagaaa atcagaaagg ttgatttgct catgtaaatt tttttctaaa
     5581 cgaaccaaat gctccctatg agcactcctt aagcatttta cctcatgaga ataatgcgat
     5641 gtttcgttag cgtactcttt ctcattgaca taaatatcga ttgaccctac cagtcctgtt
     5701 gtaatcaagg ctgctccaac agcaatgaga gctactccga tgggggcaag aacgccagtc
     5761 aaaaataatg ccgcactgac tcctacgatt agacccataa aaatactaaa tccaaatgaa
     5821 tctttatttc tactgaaaaa accctcattt ttgggaggag ataaccggct tagctcaact
     5881 tgtaaatgat gatttgcttt atctttatct acaaaatatt gttttaccag aggattggtt
     5941 tgataatagt ttctaatctt ctgttcaaca cttgcgactt caaattgact taagagcaaa
     6001 atatttcgat tatcatgatg tgttccatca aattttatat catggaaatc ggattttatt
     6061 ttttgagcca ttgccttaaa aatatgggat aactccgggt tctttctctg tgcatcctca
     6121 atcattttaa tctgtgcata acgctcagaa atattattta atattctgcc tatttcagta
     6181 gtttttttat ttacagaagg catcttactt aacgataagg aaatcttgtt ggataactca
     6241 cttagatgct gctcataaat tccatctttg aaaaactcaa tatctgcagc catatcagct
     6301 tttattgaat tgatatagtg tcttaatttt tcatcatcca attgttctgc caattcgatg
     6361 agaatattga attgtgcaga ttttcggtca cgatcgtcta tatttcgatt ccctttgatc
     6421 cgtgaagcca attgtcgaat ataatccgca ttgagtgttc catcttcctt aaaaatgcct
     6481 tttattaaac tggcgacttt atcattatta atgactctct ttaattctct ttcaatagca
     6541 tcaggagtgt ccatatcgac tgttgattga gcttcagacc ttacataatt tggagaagca
     6601 agaactgata ctttcctgcc cttgtaattc ccaacggtat tttggataac tgaaataatc
     6661 cagcctttat gatttccttc actatcacca tttggagcgg caaccaggga aaatcctgag
     6721 ggttgtccag cagaattttt ataagaaaaa caaattctcg ttgtatttct tgttacttcc
     6781 atgaatgctt tagggtcttc ttctgacaaa ggtaacgaaa aatgtttggt ttgaagaatt
     6841 tctcctatta ccgcaccggt attgtctccc tgagaaaagg atggataaac accttctgat
     6901 agcgccaaat caccttgtgg attgacagtt aaccaatcag attttaattg cgcaacagta
     6961 agtccatcaa aatccacgta acaggttctt tcaagatctt tatcgatttg ctcaatagtt
     7021 ttagcaacaa tatttttttg tgttttggtt tgtttcaata cttcttcagg aattaactca
     7081 acatctttgg ataaaaatac actttcaggc aatgaaaata ttttaggtac ttgctgataa
     7141 gttaaattga attttttaat accggacata atgactggct ccaatatttt ctcaatgcac
     7201 atattgtaac attttattca tcaagaaaac attagaatca atgtgattat attaacacca
     7261 tcattgtctc tttcgaatca aatcaaaaac ggtatgatta atcagataac agcgaggagc
     7321 aaaataaaaa atattcccgt gccatacttc tttttacacg ggatatcatt taatttagaa
     7381 atcagtactg tactttttat atacttcatc cgctgctttc aatgattcca aaagttgttt
     7441 cattttatct agaggccaac tattgggacc atcacttagt gccttatccg gatcagggtg
     7501 agtttccata aataaccctg atattccaac agctacagct gctcttgcaa gagccggaat
     7561 aaattctctc tgccccccgg atacaccatt attgcccccg ggcaattgaa ccgaatgtgt
     7621 tgcatcataa accactggac agccggtttc acgcatgata acgagggaac gcatatcaga
     7681 aaccaaatta ttgtagccga agctcactcc tcgctcacaa gccataattt gctcattacc
     7741 ttgcgccttt gccttcgcaa taacatgttt catttcccag ggagcaagaa actgtccttt
     7801 tttaatatta accggcttat tcatggcagc aactttttgg ataaaattgg tttgtctgca
     7861 taggaaggct ggcgtttgta atacatctac cacactggag acttcaaata agggcgtgtc
     7921 ttcatgaaca tcagtcaaaa caggaacacc tatttgtgat ttaacctttt ccagaatcga
     7981 taaccctttt tcaaagccag gccccctgta actggaaata gatgaacggt ttgctttatc
     8041 aaaagaagac ttatagatga aagggatatt caactgactg cacatttcct ttaaatatcc
     8101 tgcggtctct aaagccaatt cttcactttc aataacacaa gggccggcaa tcaaaaacaa
     8161 tggcttatcc aagcctgctt caaaaccaca taatctcatt ttttgtcctt ctcttgatgg
     8221 tgaatacgag ctgcaagtac aaactcctta aatagaggat gactatctct tggatttgat
     8281 gtgaattcag gatgaaactg acaagctaaa aaccaggggt ggtccgctaa ttctatcatc
     8341 tcaaccagtg aattatctgc tgatcgccct gaaataatta agccatgttt taccaaacta
     8401 tccacatact tgttattgac ttcatatcga tggcgatggc gctctataat ttgtggtttg
     8461 ccataaactt ttcttgccag agtgccttca gcaagatgac agtattgtcc gcccaaacgc
     8521 atggttccac ccaagtcagt attttcgtcc ctgatctgct tgctgccatc ggcatccatc
     8581 cattcactaa ttaaaccaag cactggatac aatgtttctt tattgaactc ggtcgaatta
     8641 gctcctgtca aaccgactac atttctcgca aattcaataa cagctgtttg catacccaaa
     8701 catatcccta aaaaaggaac tttatgctcc cgagcatatt ggatagcctt aattttgcct
     8761 tcgactcctc tctcaccaaa accaccaggt accaaaatag catcaatgga ttcaagcaat
     8821 aaagcgccat gcttttctat catctcagca tcaaaataga taatttctac ttttgtttca
     8881 gtatgaattc cagcatgcaa taaagcttca ttaatcgact tgtaggcatc attcagctcc
     8941 gtatatttac ctaccatagc gattttcact gtcatcgttt gaactgcttg catatcaact
     9001 actcgttgcc actcgctcaa atcagcctgc ttagcttcca ggcttagttt cttaacaaca
     9061 atttcgtcta aatgctgcgc atgtagaatc ataggtattt gataaatact attcgcatcc
     9121 tcaagagaaa tcacagcttc tttttcaaca ttagtgaata gtgcgatttt agccctgtct
     9181 gccatggata atggtttttc tgaacggcaa atcaatacat ctggctggat accaatagaa
     9241 cgcaattcct ttaccgagtg ttgagttggt ttggttttgg tttccccaga agtagcaata
     9301 taaggaacca aagtaagatg aataaatatc gctcgttgtg aacctaactc aatacgcatc
     9361 tgcctaattg cttcaagaaa gggtaatgat tcaatatcac caacagttcc tcctatttca
     9421 accatagcca catcgaatgc atccgcaccg agtttgatac agcgtttgat ttcattagta
     9481 atatgaggaa taacctgaac tgtccctcct aaataatcac cacgtctttc tttcttaatt
     9541 acattttcgt aaatttttcc cgatgtgaaa ttattacgct tggtcattgt tgttttaaca
     9601 aagcgctcat aatgtcccaa atccaaatcg gtctccgccc cgtcattcgt tacgaaaacc
     9661 tcgccatgct gaaagggact catagtacca ggatcaacgt taatgtaggg atcaagcttt
     9721 atcaacgtaa cgcgaagacc acgagcttca agaatagctg caagagatgc ggctgctatg
     9781 ccttttccta aagaagacac aaccccgcca gtaataaaaa tatattttgt cattttttga
     9841 ccccgctcaa aatgccgaat ccaccaattt ggtgttcaat ttaatttgca tgtaaacggg
     9901 attcaattct atcaaaatga agatataaat aacagaaatt tgagcaaaat taatagaact
     9961 attgcaattg ttgtttaata gaacgcatgg aaaccgcaca atctatcgca tctctccctt
    10021 tatggccgtg agttcctccc actcttgcca aagcctgctc atcattttca gtagttaata
    10081 caccaaagat aaccggaata ttataatcta acataaccct ttggcatccc tggctgacct
    10141 gatcacaaac gtaatcataa tgagaggttt caccacggat aactgctcca agtgccacta
    10201 tgacttctac tttttgtttt ttcgctagca actgtgcaac aaacggaatc tctactgcgc
    10261 caggaacctc aactaaggta atgtcctccg atttaaaacc cagttcagtc aatctatcta
    10321 acgccccttt ttttaatgca gaggttatca gttcattaaa agtacttaca actagcgcta
    10381 ttggaaacgt gacaccatca ctaacaattg tttttatctc tctcatgttt atcctaatca
    10441 atggctaata aatgccccag ttttattttt ttggttttta aataactgtg attttctctg
    10501 gagggctcaa tttccaaagg aatgcgttga gtaatcttca ttccataacg ctcaagagaa
    10561 gcgattttta aaggattatt tgtcagcaac cttaatgctt caacccctaa atatttcagt
    10621 atttggtatg ctacggcata atctctatcg tcagcgggca atcctaattc cagattagca
    10681 tcgactgtat caaacccctg ctcttgcaaa gcatacgcct ttaatttgtt tgccaaacct
    10741 attccgcggc cttcctgacg caaataaatt aatataccgc cttccgctcc gatctgggat
    10801 aaagacaact ccagttgctt tccacaatca cattttctgg agccaaaaac atcacctgtt
    10861 atgcactcag aatgaattcg aaccaaaggc acttgattac catacaaagg gggtttaacc
    10921 aagacaaaat gttcacagga atctatctga ttctcaaaaa cagtcatagt aaaaacaccg
    10981 ttctcctcca gaggaatttg tgtggttgca acgggatgaa tcagattttc atgccgtact
    11041 ctgtactgaa ttaaatcttt aatggtgact aaagggattt gatgtttttt tgaaaaaaga
    11101 gctaattcat cacgtctgct cattgttcca tcttcattaa tgatttcaca aatcactgcg
    11161 gccggggtca atccggcaag ttttaccaag tcaacactgc cttctgtttg acctggtctt
    11221 tctaaaactc ctctctttct agcccgtaaa ggaaaaacat gtccaggtga aatgatatca
    11281 gatggcccgc tttttggatc aatagccact tgaattgttc gagctctgtc tcttgctgag
    11341 atgcctgtgg agacaccgtt agctgcttca atcgaaaccg taaacgccgt tccatacggc
    11401 gatttgttat gccgagccat catgggcagt tggagtttgt ctatcaattc ttcagccata
    11461 ggcaaacaaa ttaaaccgca accaagacga gacataaaat taatggcttc aggagtagcg
    11521 tgctcagcag caatcaccaa atcaccttca ttctctctat cttcatcatc cattagaata
    11581 atcattttac cggctttaag tgtcgccaca gcctcttcta ttgttgctaa tgaatgtttc
    11641 atgacacttc ctctaggttc aatttcccga taatttgaag ctgatgagcc acaatacggg
    11701 taagataatc aaattcaata ttgacttgct ggcccactct caatgaaccg agattggtca
    11761 ttgataatgt atgtggcacc agcatgagtc cgacggtttg ttctgataca gtattaatag
    11821 tcaagctaac tccatctact gtaatgctac ctttgggtat taaataatga ttatgttctg
    11881 ggataaaacc atccaaatcc atcgcgataa attcattaac agcacgaatg gatttcactt
    11941 tggccctggt gtctacatga cccgatacat aatgaccacc aaagcgggtt gatgccagca
    12001 tagctctttc aagattaacc atgtcgccag atgataattt tgacaatgtg gtaacatgca
    12061 gagtttcagg tgaaatatca aaacacagtt caggaaaatc tgctggcaaa agggttaaac
    12121 aaaccccatt tacagcgata ctctcaccag gtttcaaatc ctgatagctt gaagatacga
    12181 ctaaacgact agaattttct ccttgcctat tcattaatac tttgcctgta ttttctatca
    12241 atccggtaaa cactcatcct cctgccaatc caaacatgct atcatattgt cacccatagc
    12301 ttgccaactc accgtatgag ctttttcaaa aatcccctgt tgttgataag ctgaaatcgc
    12361 ttgatgccct aaactgccgg gaactaaata caaataggtt ctatgcacca atcccttact
    12421 atgtaacgca gaaaaaatag ctccgcccgc ctcaacccat acgtcatgat atcccagttg
    12481 accaagatga gttattattg cctccaggtc catcaaccca ttttgcaaag gcatcgcata
    12541 atgagtgcta ttaggataag tctttgcctg atttgcttgt ggttgatgat aaatgtggca
    12601 atgttttgct gtcgaaaaaa tgattgtgtc atcagacaaa cttaaattgc ggtcaacaat
    12661 ggcaactggc tttgctacca atccactatc taatctggcg ttcattcttg gattatccat
    12721 ttgaactgtc ttggcactgg ttaatatgac atcactggca gcacgcattt gatgagtgaa
    12781 ctgttcgcat aaagcattgg acaaaaccac tcgagctccc tcagactttc caattttacc
    12841 atcaaaagtt tgtgctattt taacagtgac tcttggttta tgggtcatag tccaataagc
    12901 atagctttta tagaacacat caattgcctt tacaggaata tgcctgactt gtattccatg
    12961 ttcacgtaat ttttctgagg agttactttt ggcaacaatg gggtttggat caaaatagga
    13021 aaaaacaacc tcctctatac catgattgat aatagcatca acacaagggg gagttttgcc
    13081 ccaatgatta caaggctcca gcgtgacata aagcgtaacc cctggcgttt ggggtggaat
    13141 ttgtgataac aataattgtt ctgcatgcgg tgtacctgca cctctatgcc atgcctgtgc
    13201 tataatatta ccattttgca cagcaaccgc cccaacgctg ggattggggg cacaaaagcc
    13261 tctccccagt ttggcttgtt caagtgctgc aagcagaaac tgttcgtgca tatattaacc
    13321 accttcttaa tgtggtcgaa tgataacaaa ttattcaatt attgagtagc ctaatgatta
    13381 aattgaactt aaattataag ttaatcacga aaaagacatt acctaaacta ttttactggg
    13441 gtttggggat cgtcttcttt tttttagcac ctacaactaa tgccgggagt ctttcaccct
    13501 atacaaccaa agaactggaa caattagaaa gagaatttat tcaacttatt aatcagtcgg
    13561 acagcgtaga gcgcaatcct ttggccagtc aatacatcaa ctccatagga aaaaaactgg
    13621 cacattatgg ccgtatcaaa acaccttatt tttttattgt taaatccaaa gaaatcaatg
    13681 catttgcagg tccaggaggg tacataggca ttaataccca actcatttta acgagcagca
    13741 atgaaagtga actggcagct gtaatggctc atgaaattgc gcatgttcgc ttacatcatc
    13801 tttacagcat tatagaacac caaaaacaga tgcgtgttcc attattagcc tctattctgg
    13861 cgtctgcagc cttgggcgtc ttgaatccaa ctgtcgggat gggcgctatg atggcatccg
    13921 tttccggatt ttcccaggac aacatcaatt ttacacgctc aaaagaaaaa gaagccgaca
    13981 gaattggtat agacatgctg attaaggcag gcttcaatcc tcaaggtatg gccgcatttt
    14041 ttaataaaat gcaagaaaat tcccgttatt attacactgc caatattcca gcaatactgc
    14101 ggactcaccc cctggatgct gacaggatag ctgaggctga aaacagaacc agccgtttgc
    14161 ctaaaaaaca ttatactgat tctttggact atgccttatt taaagagtta atcagagttt
    14221 ctgtcgcctc taataataaa caaattcttg attattatga gcatcattgc cataaaaaaa
    14281 atcctgccac tgcttgccag tatggatacg tacttgcctt gttaaataat aacaattttc
    14341 aaaaagcagc tgaaaaatta aaccctttac tgttacagga taatagtaat ctcaattttc
    14401 aaattgctat ggctcaagct gaattaggtt tatcacaata tcaatcagca ctctcccgtc
    14461 ttgctgaatt acaaaataat tttcctgaca attatgctgc tctaatggca tacgcccaag
    14521 gattgttaac tgcaaaccaa cctcaaaaag ctacagccgt acttcttaag ggtagtaggc
    14581 aatacaaaga ggacttaccg ctttgccgag aattggcaag ggctcaagct gaatcccatc
    14641 agaaaagtta tgcctatttt actcaagcac aatgcttgct acttgagggg caaaaaagag
    14701 gtgctattgc tcaattaaaa gtggcgcaga aactggccaa aagggatgct tatttatccg
    14761 caagaatttc agcaaaaatt gatgaaataa aatttatggt tgaaaactaa tctagatata
    14821 gattaattaa aataaaatga tctcatttat cattcgccaa gagtgtaagg gtttaatttt
    14881 gctttgttca ggcccaatat aattaattaa tgcttgcaag catctcattt ctgataggtc
    14941 ttaaatggaa acaaaataga acatatttat caaaaagaaa ttagatggca aaaaggtctt
    15001 ttcataaata attttcgata ttttcagtag acaagatcat ctaaaaagcc aagtattaat
    15061 ttgctttcac tttggatagg gagttgccat gaatgaaatt caagaattct tgcgtcaaaa
    15121 actgaattcg ccgttaccta tttcacgacc tcaattggca aagctaccaa tgggtactat
    15181 ggagtttgtt acttatggta atggaaaacc cgtactgatt attcatggtg gagggggtgg
    15241 ttatgatcag gcagtgcttt tattcaaacg ctatatccct gatggttacc aaatgatttg
    15301 tccttctcgt cccggttatt tgggaacacc cattgatact ggacaaacag cagaagaaca
    15361 ggcagatgcc ctggccggct tactggatta tttgaatatt accagcgcag ttattgtagc
    15421 catatcagct ggagggcttt ctctgtatcc ttttgccatt cgccacccga aaaaaactaa
    15481 agcaatcatt gcaatagatg ctatagctgg agaatattta atgcctgaac aatccaacaa
    15541 attggctcaa gcccttttta tgactgattt tggtttatgg gtcgctaaaa aaagcatgat
    15601 ttatttcccc aagtcattta tcaagaattt aattaaactg gaaggttacc tggatccagt
    15661 acgtgtagat gaccgggtga aagagatctt aaattgtcgg gagcgcctgg aaatcattgc
    15721 tgaactaatg aatagcatgg cggactataa ggcccgtaaa acagggaccg tgaatgacat
    15781 ggcagagggt gtaaaaacca gctggtatga tttttctaaa attaactgcc ctgcactaat
    15841 aattcatggg acacatgatg ctgatgtaaa attttacaat ggtgtatttg cttatgagcg
    15901 attagcatcg aaagaaaaag agcgcttctg gattgaatac ggcactcatt tggggttttt
    15961 ctttgctcat caggcgcgtg aggtgcaaca aaaattccag gaatttataa taaagcatgg
    16021 ttaaacagtt tcttgttgaa aagttcatgg cggcagaata aacaacttct aaatctatct
    16081 actaaataac gtgagttata gataaagagg atataaaaac cagtcgaacc ccaggttacg
    16141 tttgggctga ggagatacat aagcatcgtc tcgaagcctt gacaaaaaaa cattaaatcc
    16201 gatgctaggc ttcgagacgg cataaatgcc tcctcagctc gagctgattc gaaataataa
    16261 ctgattttat taataactga agttaaatat attgttttaa tgctataaca acaacgattg
    16321 gaacaaataa gacttaaatc aagaaacgta gtttgtattg tttgaattca gtcgtcaaga
    16381 gtttccacct tggaatcgct catgactaaa tgggaaatta taaaatacca ttataatttc
    16441 ccaaacaatt catcttatta aattacttta cagcaacttc tttccaccaa ctggttttgg
    16501 tttctgcaac ccaatcggca tttcttaaat ttttaacaaa caaagcagtt tcctcagggc
    16561 ttgagtgctt ggagtcaagt tttatacacc agtcccagtc tccagaggta gaccaaaggc
    16621 tttgaacacc attcatcttt gctattgcag cagaatctga ccaggcattt ttagttttta
    16681 aaaaaacaac actgttccat gagttcattg tttcttcctt aattttaatc aattatgttt
    16741 tttcgcattg aacataaatt cattgcgtta tataaaatta gactatgaat tatcagattt
    16801 caaactcgaa tgaaaaaaaa ttctgatatt agaccttcta cctaagctaa ttattttgtt
    16861 tcacggcaag gcgaaaacgt tttgaggaac agagtttaca tacacaggac ttacgaaaaa
    16921 ctccaaggtc aaggcaaaaa atgtttttaa tgagggagtt tagataaact aaatgaccga
    16981 attaaaaaca ttttttaaca tagagattgg ggggcataag tcctgataca gtaaatgagc
    17041 aactcagaaa cgttttcagg gcgacaataa aacgaaagaa gctggccagg caagaggtct
    17101 attttaacct ttgaaaacct tcaaagcgca acatctaatc aagtcccagt ttttttaatc
    17161 gataacggag agttcggaag ctgaccccca gtagttgtgc cgcagcggtt ctgttccatt
    17221 ttgttttctc aagcgcatca agaattaact ctttttcctg atcctgaagg taaccattta
    17281 agttagttga cgtggagggt acggcaacag ctggggttat tgttgttctg ggcaaatgta
    17341 aatcgcttgg ctctatgacc tctccttcac acatagccat ggcacgctca aggatatttt
    17401 ccaactctct gacatttccc gggaaatgat aacggctcaa tatttcaaaa caagagggat
    17461 ttattttaac caaatttctg ttttgatttt tagataattt ttttaatatc gcctctgtca
    17521 ggcaagggat atcagaaagc ctttccatta aagttggaac acgcagctca atcacattaa
    17581 ttcgataata caaatcttga cgaaacctcc ctgcattgat ttcctcaatc aaatttttat
    17641 gactcgcact tagaatgcga acatcgaccg gaatttcata taactcacct attggtttaa
    17701 ttgccttctc ctgaattgcg cgtagtaatt taacctgcat ggcgagagga agttcggcga
    17761 tttcatcaag aaacaaagtg ccgccatgag ctgcaacaaa taatcctgtt ttatccgaaa
    17821 tcgctcctgt aaaacttcct tttttatggc caaaaaactc tgactccatc aactcaccag
    17881 gtatggcacc acaatttaca ggaataaatg gcttatcttt tctgggacca ttagcatgga
    17941 tcagctgagc aacaagttct ttcccaacac ccgaatcacc ttgaatgaaa accggtgcct
    18001 gactacgagc taatttatga atgctctcac gcagttgttg cattatcagg ctctcaccaa
    18061 ccaatagacc ttcatcagga ctctcggtag acggattttg catggataat gccgtcttaa
    18121 cgagttctct gagcatcttt aagtcaacag gcttggatac ataatcaaat gcaccagcct
    18181 ttaaagtatt gaccgcacct tctacatttc cataagcagt aatgacagcg actggcaact
    18241 gtggtttgta tttctgaatg aatttaacaa tttctatacc atctccgtca ggcaaacgca
    18301 tatcggttaa aaccaaagaa taataatttt gttttatatg ttctatgccc tgcttaaaat
    18361 cagacaccgc atcacaaatt aaacccatgc gtgataaagt aagagttaat aactctctaa
    18421 tgtctggttc gtcatctata acaagcactt tacttttgat catattaaaa gttcatccga
    18481 tggattcaca gtgatcgcaa aacagcttcc tttatttgag tttaacaaat ttagcctggc
    18541 ttgattaatt tcacacaaat ctctggcaat aaataacccc atcccagtac cacctcgcaa
    18601 ggtggtaaaa aatggttcaa agatattatc tctgtgttct ggaggtacac ccggtccaga
    18661 atcgcatacc gtcaaagtga ttttattcga agaagatttg gcagcaatga ctatattcac
    18721 attaccttca tgatcccgtc catgttgaat ggaattttca cacaatataa ccaaaatctg
    18781 ctccaattga cttttatcaa agaccaccga taacgactta ttggcaggta attttatcgt
    18841 aaggttacag ggattatggt gagtaaaatc ctgcttaaaa tgttctaaaa atgtagcaag
    18901 ttcattaacc tgtggttgag atttctgacg ccttgaaagt tgcaatacat ttttaatcac
    18961 cctgttcatt cgctcacaat tgttcatgat taattgtttt aaacgagtat tctcttcatt
    19021 taaatcctca ttatctccaa acaattgaat agcatgagca atcgcgccca agggattacg
    19081 taattcatga gcaatacttg ccgaaaaacg ccctaaagcc gctaatttga gttgttgtgc
    19141 ttgttgtgca atataagtca tgtcctccag aataatcagt acttcagact tatgtccaac
    19201 agaagtagaa aaaaaatgta ccctaagata aggatcttca ataatagttt gagctgtacg
    19261 ttcattattc gttgttttta aaagaaaatc atcaaatttg gatacaagtg aatcagacag
    19321 ttggtccaat ttttgaattg catgatgttt actcagatta aaaaattcac gggcagcagt
    19381 attcatcaac cggattcgct ttccctctgc aacataaata atgcctgaat gcaatcgttc
    19441 gacaatatat tcattgagcc tttgcattcc tgccaactca tagctacggt gtctggccag
    19501 actctcagac attctgaccc aattggataa ataccaggcg gtgatagccg ttgcaaaaaa
    19561 accagcccca tagattccac tataaaaaaa agtgcttaag tctttttgat tataaataaa
    19621 aaattgcaaa acattcccac atagcaataa acaactggcc agtgatgcaa aatagatggc
    19681 caaccgcccg ggaactaaaa tgcttaaagc agcaatagtc acatttaata atatgccata
    19741 accggattcc aaattaccaa tgagacccag catgctggaa atggctataa catcaatcgt
    19801 acccgataaa aacacctgct tatcaaaact taaaattttt ctatgccaaa aataaagaaa
    19861 aatc
//
LOCUS       DACVWI010000042        19478 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.042, whole genome shotgun sequence.
ACCESSION   DACVWI010000042 DACVWI010000000
VERSION     DACVWI010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 19478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19478
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.042"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(84..2084)
                     /locus_tag="JBH85_05665"
     CDS             complement(84..2084)
                     /locus_tag="JBH85_05665"
                     /EC_number="6.2.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetate--CoA ligase"
                     /protein_id="HAU0945685.1"
                     /translation="MMKFSSVTPIIQNRTMREIFMNDKVWTPKNPEQTRMWQFMDFAA
                     KRHCQVFENYQDLHTWSVKHPESFWETLCLFFKLNFDTPPHQILNYYSEMIEARWFSG
                     ARFNFAQKLLTRRDNHPALISLDENDCKSVISYAELYEKVAQCAAGLKAIGVATGDRV
                     AAVMPNTSYTIIAMLATTSLGAIWSSCSPDFGTQAALDRIGQIEPKVLFICDGHQYQG
                     KKHSSSEKVVQLTAAITSLRQVVICPNINEEINLEQLPNTSYWNDFIKPVKECDFISL
                     PFDHPVYIMFSSGTTGKPKCIVHGAGGTLIQHLKELGLHSDIKSADNLCFYTTCGWMM
                     WNWTVSALALGATITLYEGSPTYPTDNRMFRLIDEEKVTVFGTSAKFISAIEKAGVKP
                     KSEFQLSELRCILSTGSPLLPKNYDFVYEHIKKDLQLSSISGGTDIISCFALGNPILP
                     VYRGELQCIGLGMEVAVYDEQGHSIKQKRGELVCTKPFPSMPVCFWNDKDRQAYKHAY
                     FERFPGVWAHGDFAEITAHNGLIIHGRSDAILNPGGVRIGTAEIYRQVEKVDDVVDSI
                     VIGQDWQDDVRVVLFVKLREGKKLDDELINLIKTTIRKNASPRHVPAKILQVPDIPKT
                     LSGKVVELAVRQVVHGQSVSNLQSLANPQALEYFKDRNELKS"
     gene            complement(2181..3089)
                     /locus_tag="JBH85_05670"
     CDS             complement(2181..3089)
                     /locus_tag="JBH85_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HAU0945686.1"
                     /translation="MDYPQHVTIIEVGPRDGLQNEPSFLHSDKKIELINLLSQTGLKE
                     IEVTSFVSAKAIPQLADNEEVFQSINKTPSINYSALVPNERGMLKALEMGVQNIAVFT
                     AASELFNQRNINCSIKESIERFKPVLALAKTNQIRVRGYISCVLGCPYEGYIQPSQVV
                     SVTKMLLDLGVHEISLGDTIGVGTPRQTQLLLDAILPILPITQLAMHFHDTYGQAVAN
                     IYASLEYGVNRFDSSVAGLGGCPYARGASGNVATEDVLYLMHGLGIDTGIDIFKIVAA
                     GDMICKALGRKNQSKVANAMLANPCN"
     gene            complement(3100..5133)
                     /locus_tag="JBH85_05675"
     CDS             complement(3100..5133)
                     /locus_tag="JBH85_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl/propionyl/methylcrotonyl-CoA carboxylase
                     subunit alpha"
                     /protein_id="HAU0945687.1"
                     /translation="MRGKKGLKHFSIKKYPTGIKVLDMFNKILIANRGEIACRIIKTA
                     HSMGIQAIAVYSAADRNSLHVRLADSAYYIGEAPAKESYLNIDHIIQAAKESGAQAIH
                     PGYGFLSENPDFAKACEQAGIVFIGPSIKAMEAMASKQLAKQLLEKTKVPLTPGYHGV
                     EQSEEKLLSEAKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADD
                     TMIIERLVLNPRHVEVQIMADNHGNVVNLFERDCSIQRRHQKIIEEAPAPNLLPVLRQ
                     RLAEAACEVARSINYRGAGTVEFLVDGEDKFYFMEMNTRLQVEHPVTEMITGLDLVAW
                     QIKIAANDTLPLLQNQIQAQGHAIECRIYAEDPYQGFIPSIGQLQFLKEPSGDGIRID
                     TGVTLSSEITRYYDPMIAKLIAWGHNREEALHRLERSLAHYDIGGVKTNIPFLRAICQ
                     HVKFKEAKLSTDFLEKENISLPKPDNELGMLLAISYDYLGMINRTTDPLLQEAFGWQM
                     HLSSHWIWRYQLNSTIIEAQITPIDNKKFKAKIENKEMVIYARYDIDQLIIEIDQKSV
                     KARVENKDHHLIFYTDKGQLSIERFYWSKLDAQTSAHKGQLTAPMPATVVAILKNIGE
                     QVKAGESLIVLEAMKMEHTIHAPIDGILSDIFYSVGSQVSEGAELLALSESDT"
     gene            complement(5057..5905)
                     /locus_tag="JBH85_05680"
     CDS             complement(5057..5905)
                     /locus_tag="JBH85_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095854.1"
                     /note="catalyzes the hydration of
                     gamma-carboxygeranoyl-CoA to
                     3-hydroxy-gamma-carboxygeranoyl-CoA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-carboxygeranoyl-CoA hydratase"
                     /protein_id="HAU0945688.1"
                     /translation="MRILVSVYFACKRKGTIGMSDLLYEIQDKVGLLTMNRISKHNAF
                     DNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSL
                     VLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPA
                     VISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISN
                     NAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWN
                     KGSGHV"
     gene            complement(5871..7478)
                     /locus_tag="JBH85_05685"
     CDS             complement(5871..7478)
                     /locus_tag="JBH85_05685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylcrotonoyl-CoA carboxylase"
                     /protein_id="HAU0945689.1"
                     /translation="MAKLTTQINTSSQEFKNNQANMQALVTDLREKIHQISLGGDEKA
                     RTKHQQQGKLLPRERLHQLLDPGSPFLELSQLAAYQVYEDTIPAAGIITGIGRVAGNE
                     CVIVVNDATVKGGTYYPLTVKKHLRAQEIALINHLPCIYLVDSGGAFLPLQDQVFADK
                     EHFGRVFYNQAQMSALNIPQIAVVMGSCTAGGAYVPAMADESIMVKNQATIFLGGPPL
                     VKAATGEVISAEELGGAEVHCRHSGVSDHYAENDAHALHLARVAISNLNRKKPDSIHR
                     VDTVPPLYDSEDLTGIIPTDPRKPFDIREIIARVVDGSEFDEFKALFGTTLVCGFARL
                     YGYPIGIIANNGILFSESAQKGSHFIELCCQRKIPLVFLQNITGFMVGSKYEASGIAK
                     HGAKMVTAVANANVPKFTIIVGGSFGAGNYAMCGRAYAPRFLWAWPNARISVMGGEQA
                     ANVLAQITREKYAKQGKEWSLEEEEQFKTQMRSQYETQGNPYYASARLWDDGVIAPQD
                     TRKILGLGLSAALNAPIEDTRFGVFRM"
     gene            complement(7488..7808)
                     /locus_tag="JBH85_05690"
     CDS             complement(7488..7808)
                     /locus_tag="JBH85_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945690.1"
                     /translation="MYMLRHSLIYLLLSILIVVFAKYAHLIVVYIDMFFTYVNLKLTP
                     IFSQTGWGLIIRKILVLMLLPIIIAGIPALIYRALKGKDMPHFIAIVWIIWTIIVLSD
                     ILIR"
     gene            complement(7940..9124)
                     /locus_tag="JBH85_05695"
     CDS             complement(7940..9124)
                     /locus_tag="JBH85_05695"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HAU0945691.1"
                     /translation="MEHNDVVIVAAKRTPMGAMLGNLSALSSPELGAVAHMAALSQSG
                     IAPAEIDEVISGCVLQAGIGQAPARQAAIKAGIPNSTGATTINKMCGSGMKAVMLAHD
                     LIKAGTANVILASGMESMSNAPYLLSKARAGYRLGHGELKDHMFLDGLEDAYDKGQLM
                     GCFAETTAKHFNFSREQQDEYALRSMTKALKAIENGAFREEIAPVTLTTRKGDITVDV
                     DEGPETAKLAKIPQLKPAFQADGTVTAANSSSISDGAASLILMSASNAEKRGIKPLAK
                     IIAHASHSQAPQWFTTAPVDAIRKVMNKASWKQDDVDLFEINEAFAVVAMAAITQLEL
                     NPEQVNIHGGACALGHPIGASGARILVTLMHALKHQGKKRGIASLCIGGGEATAMAIE
                     LI"
     gene            complement(9136..10305)
                     /locus_tag="JBH85_05700"
     CDS             complement(9136..10305)
                     /locus_tag="JBH85_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HAU0945692.1"
                     /translation="MSLMYTGLDFQLGETYDMLRDSVNQFAQTEIAPLAAQIDEKNTF
                     PNHLWRKLGEMGLLGITVSEEYGGANMGYLAHAIAMEEISRASASVGLSYGAHSNLCV
                     NQIFLNGNNEQKQKYLPKLISGEYIGALAMSESNSGSDVVSMQLQARSAGDKYILDGT
                     KMWITNGPDADVLVVYAKTDKQAGSKGITAFIIEKGMPGFKTAQKLDKLGMRGSNTCE
                     LVFDQCEVPSENVLGTVNQGVKVLMSGLDYERTILAAGPVGIMQACMDVVLPYVHERK
                     QFNQAIGEFQFIQGKLADMYTDLNACRAYLYAVAKACDNGRVSRKDAAGVILYTAEKA
                     TQMALQSIQILGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKETA"
     gene            10631..11317
                     /locus_tag="JBH85_05705"
     CDS             10631..11317
                     /locus_tag="JBH85_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0945693.1"
                     /translation="MRKLVLWGHGIEDYREMFDLPQGVENSRLLEYGCGPSAVNYQQT
                     QVKKNGVVSCDPLFVLDKDTLLAKAKMIFANMAEEVRQHQDQFDFSRNGSLDKLLQER
                     QEGMKQFFADYEQGKADGRYLGLTDYHLPFADFTFDFALSSHYFFADLDDQTVDFHLI
                     AIRELARVAKEVRIFPLIDREGNTSQFLGPVLLGLQQENYGVEVREAAFHLHKSGNAM
                     LRVWAQQCVV"
     gene            11345..12364
                     /locus_tag="JBH85_05710"
     CDS             11345..12364
                     /locus_tag="JBH85_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945694.1"
                     /translation="MVCREEKMAVSNKKNSEFTPSLRSHMIAALLSMGAAAIILWLAS
                     GMTLAAVIVDSFSLGFYIGFMLLMSAAPAVLASPVILPGLLLVVSGLFLGAVAATFAH
                     RLKNNPSLPQNNNGNGLINELTKDKSELLISHDDLQCQSNSLEGENTLSQQNEDNVTG
                     EKFGFMKFWGSLGLTSFASSGATALLGWLATDFVVSLSIIPVFLLGMTLAIVLVPLSI
                     GLSGIFALPAVTALMFALGGFATGVFAATLAAYFIADNQAQDHPVEPIIRSSMERQCK
                     DQGSHQKILNGLKKDKLSANEEVINSDLNEQKSRGPKTSKSDTGVKEEHINTAEEYSF
                     CGLRF"
     gene            12485..13651
                     /locus_tag="JBH85_05715"
     CDS             12485..13651
                     /locus_tag="JBH85_05715"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HAU0945695.1"
                     /translation="MSKSFRYLSGQMHKKLSELILFRFLLIVSTKIITKNVIIPQLFF
                     INDSPCFRSNFMYSLLRPLLFRLDAEKAHSLTLSLLHYLPGFYFRKIAGQPVHAMGLV
                     FPHQVGLAAGLDKNGEHLDALAKLGFSFIELGTVTPKGQAGNPKPRLFRIAEANAIIN
                     RMGFNNSGVDVLVENVKRANYKGILGINIGKNKETNLNQAAEDYLYCFRKVYDHASYV
                     TINISSPNTPDLRQLQQGDYFAELLTQLQKEQIKLADQYGRHVPLVVKVSPDETDETL
                     KQMTDIILQYGIEGIIATNTTCSREMVKNLPCSEEQGGLSGRPLMELSTRCLRLLKQY
                     VGNDVTLIGVGGIDSLESAKDKINAGASLLQVYSGLVYKGPELIHDIVSGLNAI"
     gene            13648..14454
                     /locus_tag="JBH85_05720"
     CDS             13648..14454
                     /locus_tag="JBH85_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0945696.1"
                     /translation="MILVVRKSMYITKELAVRMEGCIKQSHIEVTKRYSQGKILEING
                     GAACFSGFESFLSQVVGWGFKTEPNQYKAEIEAIENFYKSLGHNRVDIELCPFVGNHL
                     INFLSQRGYYITELNNVSVLDLKSYHLVAHSEDDGFIIREVKQSELEEWAKRVAIGFG
                     FLEAQEQFYQYASAKGVLAFAAYDHGNLVAGATIAIHGDACDLGVTSTLPLYRGKGLQ
                     KKLLFARLNLAKQYGLEFATVTTQPGTVSDLNVQKAGFRCAYTRIKLTME"
     gene            14514..16307
                     /gene="msbA"
                     /locus_tag="JBH85_05725"
     CDS             14514..16307
                     /gene="msbA"
                     /locus_tag="JBH85_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HAU0945697.1"
                     /translation="MRTRLTSKLMKNNLPIKSRLLYKRLLSYVKPFWPVLLLGVLANI
                     LYSGIDAGFTYMTKLFLDKSFITIDLNFVKQIPLIVLIGITLRGLVSSLGSYCMTWVA
                     RSVVKVLRQTVFSHIIHLPADYYDEATSGQLLSKILYDVEQVAQVSADALTDFIQNIC
                     LVIGLLTVMMVICWQLSLMFLLTIPFVGIIVNYTNKRVRRISHKVQKTMGEVTEIASE
                     AIEGYRVVRIFGGERYEITKFNKATEYSRKNDMKVAISKAINVSGVQLVIAIGIATII
                     MAAIHLSTVITISAGSFLAIIAAMLQLIKPMKTLTTLNATIQRGLAGAESVFNLLDLP
                     LERNNGLILKEKIRGEIEFKHVYHAYRQGQNILHDVNFVIEAGTSVALVGHSGSGKTT
                     IASLLPRFYELSQGMITLDGMPIQQLSLESLRKQMSLVSQNVTLFNDTLANNIAYGRF
                     DASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPI
                     LILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQ
                     GSHQELLDMDGHYAQLYKVQQFGRINEEVVA"
     gene            16307..17278
                     /locus_tag="JBH85_05730"
     CDS             16307..17278
                     /locus_tag="JBH85_05730"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HAU0945698.1"
                     /translation="MSFFVNRIWYGNHFLQWILVPFSWLYRIVIRTRRWYLQRFCQQL
                     YPIPIIVVGNVTVGGVGKTPLVIEIAKKIQQKGLKVGIVSRGYKAAIKHFPYEVKLND
                     SAELVGDEPLMMARKINCPVVIAPKRNEAVRYLLDKHSVEIIISDDGLQHYKMGRSIE
                     IVVIDGMRKLGNGFCLPAGPLREPDSRLKQVDFVIVNQGAAEGTYSMELIPKNIVRLS
                     TQEEVSNDLFTSEVAAVAGIGNPQRFYSTLSQLGIKFNPYSYPDHHQFKPHDLNDIDL
                     PVIMTEKDAVKCYSFSSDKLYYLPVEAKLNDSFWEAFWSHQQLQGYY"
     gene            17223..18230
                     /locus_tag="JBH85_05735"
     CDS             17223..18230
                     /locus_tag="JBH85_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945699.1"
                     /translation="MIPFGKHFGHINNYKVITNMMPKRIWLLLLSMFLFLSGSVFAVE
                     EPEEDKVAQTNEPTVGSWVFTGMVTNESGDRYGYFFQMQRQGTDFYAKTALIDGQTNQ
                     LILFYEANEKIDSSTQLNWQVGRSFLRYNPINDSWIFGVKVENAKGFNFKVDMLKQDN
                     KDVETQVLRPGVELQAVQTSRLNGHVQTGVDNKEQFVTGNKAWFSKLWFSKDQNSPHD
                     ISTIFCRLSNDNGFYSANLKEPDATGAAVAGWRDPSGNNVKMSQFVSIKTLTDNQCLL
                     SVGLPRLKLKLVNTIKQEDDFPLTVAGFSEENPKGFCFISKQTFKQIKESAVQAVTNL
                     G"
     gene            complement(18232..19404)
                     /locus_tag="JBH85_05740"
     CDS             complement(18232..19404)
                     /locus_tag="JBH85_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014841891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945700.1"
                     /translation="MVGVFFLLFQFFLQLSSGIIVGAIMHEEHISALSAGLLSSAFYY
                     VYTSFQIPVGILFDRYNTRYLLSVNATLCAIGCFVFASGHNLPTLFLGRLIIGAGSAF
                     AFIGLSHLLRQHFPLKQYAFMIGLSETLGFTVTVLGMIGMGSVISHFGWRYFINIAGI
                     IGFLIASLCWLCIPNSKPVVSFPHQYKQQIIPILKNKLAWFNGLFVCLEFSVITVFAA
                     MWAVPFLQLKLDCTIKTASILTSMVLLGAGLSCPLLGQISVHLNRRKPLIHASCLSTA
                     LLLILVLYLPTQNKLLIGILMFSMGLTCGAYMLAYSISNELAPPEFLSTCTGFTNTLA
                     MLSAPLLQPLVGFFLDVLSNHKSQYSLADYQLALLIVPFAMLLASLFTCLLPEKSN"
BASE COUNT         5745 a         3704 c         3958 g         6071 t
ORIGIN      
        1 tcttgcagtt gccctttcta ttggttgata tgagatgaat tttaatgtgg attcgtgctg
       61 aaaatagcta ttttcacgca attttagctt ttcaattcgt tcctgtcttt aaaatattct
      121 aatgcttgag ggtttgccaa agactgtaag ttacttactg attgaccatg aacaacttgc
      181 ctgacggcga gctccactac tttcccgcta agagttttag gaatgtctgg gacttgtagt
      241 attttagctg gcacatgtcg tggtgaggca ttttttctaa tggttgtttt aatcagattg
      301 attaattcat catccagttt tttcccctca cgcaacttaa cgaataaaac aactcgtaca
      361 tcatcctgcc aatcttgccc aatgactata ctatcaacaa catcatctac tttttcaact
      421 tgtctgtaaa tttcagctgt tcctatacga actcctcccg gatttaatat agcgtcggaa
      481 cgtccatgga taattaatcc attgtgggca gttatttcag cgaaatcgcc atgtgcccac
      541 acccctggga agcgctcaaa ataagcatgt ttatatgctt gtctatcctt atcattccaa
      601 aaacagactg gcatggaagg gaagggtttg gtgcaaacca actcaccacg tttttgtttg
      661 attgaatggc cttgctcatc atacaccgca acttccatac ctaatccaat gcattgtaat
      721 tcacccctat aaaccgggag aataggattt cccaatgcaa aacaagaaat aatatccgtc
      781 cctcctgaaa tagagcttaa ttgcagatct tttttaatat gttcatagac gaaatcatag
      841 tttttaggta gaagagggga gccggtagac aagatacagc gcaactcgga taattgaaat
      901 tcactttttg gttttacccc ggctttttca atcgcggata tgaacttggc gctggttcca
      961 aatacagtga ctttttcttc atctatcagt cgaaacattc tattatctgt agggtaggtt
     1021 ggagaacctt catatagagt gatggtagct cccaatgcca aagcagaaac agtccagttc
     1081 cacatcatcc agccacacgt tgtataaaaa cataaattgt ctgcggattt aatatctgaa
     1141 tgaagaccta attctttcag atgctgaatt aaagtacctc ccgcgccatg aacgatacat
     1201 ttaggtttac ctgttgttcc tgaagaaaac ataatataaa caggatgatc aaaaggcaga
     1261 gaaataaaat cacattcttt taccggtttt ataaaatcat tccaatacga tgtgttaggc
     1321 agttgttcga gattaatttc ctcattaata tttgggcaaa ttactacctg tcttagagaa
     1381 gtaatcgcag cagtaagttg tacgaccttt tcagagctgc tgtgtttctt accttgatat
     1441 tgatgaccat cacaaataaa gagtacttta ggttcaattt gtcctatcct gtcaagtgca
     1501 gcctgggtac caaagtcagg tgagcaggat gaccagattg cccctaaaga agttgttgcc
     1561 agcatggcaa tgattgtgta agaagtatta ggcatcactg cggccacccg gtcgccagtg
     1621 gcgacaccaa ttgctttaag accagcagcg cattgggcta ctttttcata taattcagca
     1681 tagctaatga cacttttgca gtcattttca tcaaggctta ttagggcagg gtgattatcc
     1741 ctgcgggtta ataatttttg agcgaaattg aagcgtgctc ctgaaaacca gcgtgcttca
     1801 atcatttcag aataataatt cagaatttgg tgaggtggtg tatcaaagtt caatttaaag
     1861 aaaaggcaaa gagtttccca gaatgattca ggatgcttta ctgaccaggt atgtaagtct
     1921 tgataatttt caaaaacttg acaatgcctt tttgcggcaa agtccataaa ttgccacatt
     1981 cttgtttgtt cagggttttt aggtgtccat actttgtcgt tcatgaaaat ttctctcata
     2041 gttctgtttt gaatgatggg tgttacactg gaaaatttca tcagtaattt gtttataagt
     2101 ataggctagc acaaaactgg gtgcttctct ttaagtttcc gatttttagt acttatcaaa
     2161 gccaataatg atggagcttc ttaattacat ggattggcta gcatagcatt agctactttg
     2221 gattgatttt ttcgccctag tgctttgcaa atcatatctc cggcagcaac aattttaaat
     2281 atatctatac ctgtatcaat acccaatcca tgcatcaaat aaagtacatc ttctgttgca
     2341 acattgccac tggcacctcg agcatatgga caacctccaa gacccgcaac agagctgtca
     2401 aagcggttaa ctccatactc aagggaggca taaatatttg ctacggcttg tccataagta
     2461 tcgtggaaat gcatggctaa ttgtgtgatt ggaagtatgg gtagtatggc atcaagaagc
     2521 aactgagttt gcctcggagt tcccacgcca atagtatctc ccaacgaaat ttcgtgtacg
     2581 cctagatcaa gaagcatttt agtgacacta acaacctgac taggttgtat atatccttca
     2641 tagggacagc ctaatacgca ggagatatag cctctcactc taatttgatt ggtttttgct
     2701 aatgctaaaa caggtttaaa gcgttctata ctttctttaa tagaacaatt aatattgcgt
     2761 tgattgaata attcacttgc agcagtgaat actgcaatat tttgtactcc catttccagg
     2821 gctttaagca ttcctcgttc gtttggaacc agggcagagt agttgatgga gggagtctta
     2881 ttaatagatt gaaatacttc ttcattatca gctagctgtg gaattgcttt tgctgaaaca
     2941 aaactggtga cttctatctc tttcagccct gtctgactga gtaaattgat taattcaatt
     3001 tttttatcac tatggagaaa agatggctca ttttgtaagc catctctagg acctacttcg
     3061 attattgtca catgctgagg atagtccata aatattctct taagtatccg attcgctaag
     3121 tgctaacagt tctgctccct cactcacttg ggaacctaca gaataaaaaa tatctgataa
     3181 tataccatcg attggagcat gaatggtgtg ttccattttc attgcctcaa gtacaattaa
     3241 gctttcacca gcttttacct gttcaccaat attttttaaa atagcaacga cagtggcagg
     3301 cattggcgcg gttaactggc ctttatgggc ggaagtttga gcatccagtt tactccagta
     3361 gaagcgttcg attgaaagtt ggcctttgtc agtatagaag atcaaatggt gatctttgtt
     3421 ttctactctg gctttcactg atttttgatc aatttcaata ataagctggt caatgtcata
     3481 tctggcatag atgaccattt ccttgttttc aatttttgct ttaaattttt tattatctat
     3541 aggtgtaatc tgagcttcaa ttatcgtgga gttcaattga taacgccata tccaatggct
     3601 ggaaagatgc atttgccagc caaatgcctc ttgcaacaag ggatccgtag tgcgattaat
     3661 catacctaaa taatcataac ttatggccag gagcatacct aactcattat ctggtttagg
     3721 caggcttatg ttttctttct ctaaaaaatc agtacttaat tttgcctctt taaattttac
     3781 atgttggcaa atggctcgta gaaagggtat atttgttttt accccgccaa tgtcatagtg
     3841 agccaggcta cgctccaatc tatgtaatgc ttcttcacga ttatgtcccc aggcaatcag
     3901 cttggctatc atgggatcat aataccttgt tatttctgaa gacaaagtaa cacctgtatc
     3961 aatgcgtatg ccatcgccag agggttcttt taagaattga agttggccaa tagagggtat
     4021 aaaaccctga taaggatctt cagcgtaaat acggcactca attgcatggc cttgagcttg
     4081 aatttgattt tgaagcaaag gtaatgtgtc attcgctgca atttttatct gccaagcgac
     4141 aagatcaagt cctgtaatca tttctgtgac aggatgttct acttgaagtc ttgtattcat
     4201 ttccataaag tagaatttat cttcaccgtc taccaaaaac tctactgttc cagctcctct
     4261 gtagttgatg gagcgggcta cttcgcaggc tgcttctgcc agcctttgcc taagcacggg
     4321 caataaattg ggagcagggg cctcctcgat aattttttga tgcctgcgct gaatggaaca
     4381 atctctctca aacaaattta caacatttcc atgattatcc gccatgatct gtacttcaac
     4441 atgacgagga ttaagaacta atcgttcaat tatcatagta tcatccgcaa aggaggccat
     4501 agattctctt ttggctcctg ctaatgcatc atgaaactct ttttcatcat gtactgctcg
     4561 cattcctttt ccaccaccac cattagcggc tttaatcagt actggaaatc caattttttt
     4621 agcttcgctc aacaactttt cttcagactg ttcaacgcca tgatagcccg gtgtaagtgg
     4681 gactttcgtt ttttcaagaa gttgtttagc taattgtttg gatgccattg cttccattgc
     4741 tttaatggag ggaccgatga aaacaatgcc cgcttgttca caggctttgg caaaatcagg
     4801 attttcagat aaaaatccat agccaggatg gatggcttgt gctccacttt ctttagctgc
     4861 ctgaataata tggtcaatat tcagataact ttctttagct ggcgcttctc caatataata
     4921 agcgctatca gctaatcgca catgaaggct gtttctatct gctgctgaat aaacggcaat
     4981 agcctgaata cccatagaat gtgctgtttt aatgattcga caggctattt cgcctcggtt
     5041 agcaattaat attttattaa acatgtccag aacctttatt ccagttgggt atttctttat
     5101 tgagaaatgc tttaagccct tcttgcccct catcagatac tcttttatga gcaatcagag
     5161 aagcagtgta gcgaaccagt tcttcatcta tttttttatt agcgacgtat tgtgccagtt
     5221 gttttgagtt tttaaccgct tctggagcat tattactgat ttgcgaggcg tatttgagag
     5281 taaactccaa caacgtatca tcagggacgc agtgctgaac taaattaaga gaatatgcac
     5341 gtgtggcatc aaaaacttca gcactcatga ataacatttt tgccgctcgt tcacctattg
     5401 ctctaactac atagggacta attactgctg gaataagacc taatttcact tcagaaaaac
     5461 aaaaacgtgc tgaagtagat gcaatggcta tatcacatgc tgctgccaat ccagctccac
     5521 caccaaaagc ggcaccttga accatggcga tagtaggttt tgggctttga ctgatgctat
     5581 acattaaatt acctaatacc agactgtctt ccaggttttc ttcttcagta aagttagcca
     5641 tgctttgcat ccaggtcaaa tcagcaccag ctgaaaaatg ctttccattc gctttaagta
     5701 ctatgacgcg aacgttagta tcatttattg cggagtcaag tcgtattctc atttcagtca
     5761 gcagttgatt atcgaacgca ttatgcttgc taattcgatt catagtaagt aaacctactt
     5821 tatcttgaat ttcatataat aaatcactca tgcctattgt tcctttcctt ttacatgcga
     5881 aatacaccga aacgagtatc ctcaatcggt gcgtttaagg ctgcagataa tccaagtccg
     5941 agtattttgc gtgtatcctg aggcgcgatg accccatcat cccaaagcct ggcactggca
     6001 tagtaaggat ttccctgagt ttcatactga cttctcattt gagttttaaa ttgttcttct
     6061 tcttcgagtg accattcttt tccttgcttt gcatatttct ctctggtgat ttgcgcgaga
     6121 acattcgctg cttgttcacc acccataact gagatgcgtg cattaggcca ggcccatagg
     6181 aaacgaggag catatgcccg gccacacatg gcataattac ctgctccaaa acttccacca
     6241 acaatgatgg taaatttggg tacattagca ttggcaactg ctgtcaccat tttggctcca
     6301 tgttttgcaa tacctgatgc ttcgtatttg gagcccacca taaatcctgt aatattttgc
     6361 aggaatacaa gtggtatttt acgttgacag cacagctcta tgaaatggct gcccttttgc
     6421 gcactttcac taaaaagtat gccattatta gcaataatcc ctataggata tccatatagg
     6481 cgagcaaaac cgcaaaccag ggttgttcca aaaagtgctt tgaattcatc aaactctgaa
     6541 ccatctacca ctcgagcaat aatttctctt atatcaaaag gctttctagg gtcagtggga
     6601 attattccgg taagatcttc gctatcataa agaggaggaa ctgtatccac tctatgaatg
     6661 gaatctggtt ttttacgatt taaattgcta atggcgactc gcgctaaatg aagcgcgtga
     6721 gcgtcatttt ccgcataatg atcagatact cctgagtggc gacagtgaac ttcggctcct
     6781 cctaattctt ccgcactgat tacttctcct gttgctgctt taacgagagg agggcctcca
     6841 aggaatatgg ttgcctgatt cttgaccata atagattcat cagccatggc tggtacatag
     6901 gctcctcccg ccgtacaaga tcccataacc acggctattt gaggaatatt taatgctgac
     6961 atttgcgctt gattataaaa aacacgtcca aaatgttctt tatcggcaaa gacctgatct
     7021 tgaagcggta gaaaggcacc tcctgaatcc accagataga tgcatggaag atggtttatc
     7081 aatgcaattt cttgtgccct taagtgtttt tttacggtca gaggataata tgttccacct
     7141 ttaacagtgg catcgttgac cacaatcaca cattcgtttc ctgccactct tccaatgcca
     7201 gtgattattc ctgcagcggg tattgtgtct tcatagactt ggtaggcagc aagttgagat
     7261 agctcaagaa aaggactacc tggatccagc aactggtgta agcgttctct cggaagtagt
     7321 ttgccttgtt gttgatgttt ggtacgtgct ttttcatctc cacccagaga gatttgatgt
     7381 attttttctc ttaaatcagt aaccaatgct tgcatattcg cctgattatt tttgaattcc
     7441 tgactgctgg tattgatttg agtagttaac ttagccattt tttatcctta ccgaatcaaa
     7501 atatcactca agactatgat ggtccatatt atccagacaa tcgcaataaa atggggcatg
     7561 tcttttcctt tgagtgcccg gtaaattagc gctgggattc ctgcgatgat tatgggtaat
     7621 aacataagga ctagaatttt cctgataatc agtccccaac ctgtttggct gaatataggt
     7681 gttaatttta aattaacgta agtgaaaaac atatcgatgt aaactacgat aagatgggca
     7741 tattttgcaa atacgacaat aagaatactt agtagaaggt aaatgagact atgtcttagc
     7801 atgtacatcc tttattattg ttataaccaa gttggttttg ataggtaaaa cattatctgg
     7861 tcgcaaataa aaatagcaac cagttttaat ataaaaacct gggtaaaaat aaaggtttta
     7921 cccaggtcat ctttaaccgt taaattagct caattgccat agctgttgct tcaccaccgc
     7981 ctatacataa agaagctatt ccgcgttttt taccctggtg ttttagcgca tgcattaaag
     8041 taaccagaat gcgagctcct gaagcaccaa tgggatgccc taaagcgcat gccccgccat
     8101 gtatattgac ttgttccgga ttcaattcaa gctgagtaat tgctgccatc gctactactg
     8161 caaacgcttc attaatctca aaaagatcca catcatcttg tttccatgac gctttgttca
     8221 ttaccttacg gattgcatca acaggagcgg ttgtgaacca ttgtggggct tgggaatggc
     8281 tggcgtgtgc tatgattttt gccaagggct taatgccacg tttttctgcg tttgaggcac
     8341 tcattaaaat taaactggcc gcgccatctg aaatagaact tgaattggct gctgtgactg
     8401 taccatctgc ttgaaaggct ggttttaact gaggtatttt ggcaagtttg gctgtctcag
     8461 gcccttcatc gacgtcaacc gtgatatctc ctttgcgggt agttaaggtg acaggagcga
     8521 tttcttctcg aaaggcacca ttctctattg cttttagcgc tttggtcatt gagcgtaagg
     8581 catattcgtc ttgttgttct ctgctgaaat taaagtgttt tgcagttgtt tcagcgaaac
     8641 accccattaa ttgtccttta tcataggcat cttctaatcc atcaaggaac atatgatctt
     8701 tcagttcacc atgacccagt ctatatcctg ctcgtgcttt ggataataaa tagggggcat
     8761 tgctcatact ttccataccg ctagccaaaa ttacattagc tgtacctgcc ttaattaaat
     8821 catgcgcaag catcacagcc ttcatgcccg aaccacacat tttattaatg gtcgtggctc
     8881 ctgtcgaatt aggtatgcct gcttttattg ctgcctgtct ggcaggagct tgaccaatac
     8941 cagcttgtaa tacacaacca ctgatcactt catcgatttc tgccggagca atacctgatt
     9001 gagacaacgc tgccatatgc gctactgccc ctaactctgg ggaggaaagt gcagataaat
     9061 tgcctagcat agctcccatt ggtgttcttt ttgctgcgac tatcacgaca tcattatgtt
     9121 ccattgtctc attccttatg ctgtttcttt aaaaagttca cgaccaatta gcattcttct
     9181 tatttcagaa gtgcctgccc caatttcata caacttcgca tcccttaata aacgtcctgt
     9241 aggatattca ttaatataac catttcctcc aagaatctgt attgactgta aagccatttg
     9301 tgttgctttt tctgcagtat ataaaataac tcctgcagca tccttacgac taaccctacc
     9361 gttgtcacaa gccttggcaa cggcatacag ataagctctg caagcattca aatcagtgta
     9421 catatcagca agtttgcctt gaataaattg aaactcacct atcgcctgat taaattgctt
     9481 gcgttcatgg acatagggta atacaacatc catacaagct tgcataattc caactggtcc
     9541 ggcagcaagg attgtgcgtt cataatccaa gccgctcatt aataccttga ccccttgatt
     9601 tactgttccc agaacatttt cagaaggcac ttcacattga tcaaatacca attcacatgt
     9661 gtttgaccca cgcataccaa gcttgtctag tttttgtgct gttttaaatc cgggcattcc
     9721 tttttcgata ataaaggcag taatcccttt gcttccagcc tgcttgtctg ttttagcata
     9781 gacaaccaaa acatccgcgt caggaccatt ggttatccac atttttgtgc cgtcaagaat
     9841 atatttgtct ccagcagaac gggcttgtaa ttgcatactg actacatcgg accctgagtt
     9901 ggactcactc atcgccaaag caccaatata ttcaccgctt ataagtttag gcaaatattt
     9961 ttgcttttgc tcattatttc cgtttaaaaa gatttgattg acacacaaat tagagtgcgc
    10021 gccataactt aaaccaactg atgcggaggc tctggaaatt tcttccattg ctatggcatg
    10081 cgcgaggtat cccatattgg caccaccata ttcttcactt actgtgatgc caagtaatcc
    10141 catttctccc agttttctcc agagatggtt aggaaaagta tttttctcat cgatttgtgc
    10201 agctaaagga gctatttcag tttgggcaaa ttggttgacg ctgtctcgta acatgtcata
    10261 cgtttcgccc agttgaaagt ctaagcctgt gtacatgagt gacatcctgt tatgttgata
    10321 aatacgctag actataccca aatgaagcgt acttgtcacc ttcctgttta tttccaagac
    10381 aatcttttta acccactgat acatttgata atatacggat gtcttattgc gaaaaattga
    10441 aagaatttga atggtaaata ttcatttgtt caatcgcaag gtggcttttc tctccaaact
    10501 ttttaaattt ttatctcaaa aacaccttta cccagggcag tggttaaaat gattctttac
    10561 ctgggtaaaa aaatcaccta atctttagcc aaagtgtaat ccaaatggat ttagaagagg
    10621 agtatttcta atgagaaaac tggtattatg ggggcatgga attgaagact atcgtgagat
    10681 gtttgattta ccccagggag tggagaattc acgactatta gaatacggtt gcggtcctag
    10741 cgctgttaat taccagcaaa ctcaagtgaa aaaaaatgga gtagtgagtt gtgacccttt
    10801 attcgtattg gataaagata cgctgcttgc taaagcaaaa atgatttttg cgaatatggc
    10861 tgaagaggtt aggcagcatc aggatcaatt tgactttagc cgtaatggta gtttggataa
    10921 attgcttcag gaaagacaag aaggaatgaa gcagtttttt gcggattatg aacaaggtaa
    10981 ggctgatgga aggtacctgg ggcttaccga ttatcattta ccatttgccg attttacctt
    11041 tgattttgct ctgagttctc attatttttt tgcagatctt gacgatcaaa cggttgattt
    11101 tcacctgatt gcaattcgtg aattagcaag ggtagccaaa gaagtgagaa tttttccatt
    11161 gattgataga gaaggtaaca cttcacaatt tctaggaccg gttttactag gcttgcaaca
    11221 ggagaactat ggagtggagg ttagggaggc tgcttttcat ttgcataaat caggtaatgc
    11281 aatgctaaga gtttgggcgc aacaatgtgt tgtttaattg agattacttt tttaaagtaa
    11341 gtgactggta tgcagggagg aaaaaatggc agtatcaaat aagaaaaaca gtgagtttac
    11401 accttcctta agatctcaca tgattgctgc gttattaagt atgggagcag ctgcaattat
    11461 cttatggttg gcgtcgggga tgacattagc tgctgttatc gttgactcct tcagtttggg
    11521 tttttatata gggtttatgc tccttatgag cgccgctccg gctgtgttgg cttcaccagt
    11581 tattttacct ggtttactac ttgttgtatc aggattgttt cttggagcgg ttgctgcaac
    11641 gtttgcgcat cggttaaaaa ataatcccag tttgccacaa aacaataatg gaaatggtct
    11701 gatcaatgaa ttaacaaaag ataaatctga gttgctgatt agtcatgatg atttacagtg
    11761 tcaatccaac tctttggaag gtgaaaacac tttatctcaa cagaatgagg ataatgttac
    11821 cggggaaaaa tttggtttca tgaaattttg gggaagcttg ggtttgactt cgtttgctag
    11881 ttcaggagcg actgctttat tgggttggct tgctacagat tttgtagttt ctctctctat
    11941 aattcctgtg tttttgctag gaatgactct agccatcgtt ttagttccat tgtcaattgg
    12001 attatccgga atttttgcgt taccagcggt tactgcgctt atgtttgcct tgggaggctt
    12061 tgctacagga gtgtttgctg ctaccctggc tgcatatttt atagctgata atcaggcgca
    12121 agatcatcct gttgagccaa taatcagaag ctcgatggag aggcaatgca aagatcaggg
    12181 ttctcatcaa aaaattctaa atggattaaa aaaagataaa ttgagtgcta atgaagaagt
    12241 gattaattct gatttaaacg aacaaaaatc aagaggtcca aaaacatcaa agagtgatac
    12301 tggtgttaag gaagaacata ttaatactgc agaggaatac agtttttgtg gtttaagatt
    12361 ctagctttat tatgagtgga ccaacgatta atagagacgc gcctatgatt ttccctttta
    12421 gacagggaga atagcctatc agcagaataa gctcgtttat gcaacaggac tatttgcaat
    12481 cataatgagc aagtcatttc gctatttatc tgggcagatg cataaaaaat tatctgaatt
    12541 aattttattt cgcttcctat taatcgtcag tacgaaaatc atcacgaaaa atgttatcat
    12601 acctcaattg ttctttatta atgattctcc ctgctttagg agtaatttta tgtattcact
    12661 gctgcgccct ttacttttca gattggatgc agaaaaagcc cattcattaa cattatcctt
    12721 attacattac ctccctggtt tttattttcg gaaaatagcc ggtcaacctg ttcatgctat
    12781 gggtcttgta ttccctcatc aagttggact ggcagctggt ttagataaaa atggcgaaca
    12841 tttggatgca ttagccaaat tgggattttc attcattgaa ttagggacag taacacctaa
    12901 gggacaagca ggtaatccca aaccaaggct ttttcgtatt gcagaggcaa atgcgattat
    12961 caacaggatg ggttttaaca attcgggagt tgatgtactg gtagaaaatg taaaaagagc
    13021 aaattataaa ggaatattag ggataaatat tggaaaaaat aaagagacta atttaaatca
    13081 agctgcagag gactatcttt attgcttccg taaagtatat gatcatgctt cctatgtcac
    13141 tatcaatatt tcctctccca atacccctga tttacgccag ttacaacaag gagattattt
    13201 tgctgaatta ctcacccagt tacaaaaaga acagataaaa ttagcagatc aatatggacg
    13261 ccatgtgcct ttagtggtga aagtatctcc ggatgaaaca gatgaaacac taaaacaaat
    13321 gacagatatc attttacagt atggaatcga gggtattatt gcaacgaata ccacctgttc
    13381 tcgggaaatg gtaaaaaatt tgccttgttc tgaagaacag ggcggattaa gtggtaggcc
    13441 actgatggaa ttatctactc gctgcttgcg cttgttgaaa caatatgttg gtaatgatgt
    13501 gacattgata ggagtgggtg gtattgacag tttggagagc gccaaagaca agatcaatgc
    13561 aggagcttcg ttattacaag tatacagtgg tttagtttat aagggaccgg agttgattca
    13621 cgatattgtt tcaggtttaa atgctatctg atcctggtgg tgaggaaatc gatgtatatt
    13681 actaaggaat tggctgttcg catggaaggg tgtatcaagc agagtcacat tgaggtgaca
    13741 aagcggtact cacaaggaaa aattctggaa atcaacggcg gagcagcttg tttttctggt
    13801 tttgagtcat ttctatccca ggtagtaggc tggggattta aaacagagcc taaccaatat
    13861 aaagctgaaa tagaagctat agaaaatttt tataaatcgt taggccataa tcgtgtcgat
    13921 attgagttat gtccttttgt gggaaatcat ttaattaatt ttttaagcca aagaggttac
    13981 tacataactg agttaaataa tgtttcagtt cttgatttaa agagttacca tctggttgct
    14041 cactccgagg atgatgggtt tattataaga gaagtgaagc agtctgaatt ggaagagtgg
    14101 gcaaaaagag tagctattgg atttggtttt cttgaggctc aggaacaatt ttaccaatat
    14161 gccagtgcaa aaggagtttt agcatttgca gcatatgatc atggtaattt ggttgctggc
    14221 gccacaatag caattcatgg tgatgcttgt gatttgggcg ttaccagcac attacctctt
    14281 tatcgaggga aaggccttca gaaaaaatta ttgtttgctc gtctgaatct ggccaagcag
    14341 tatggtttgg aattcgccac cgtaactact caaccaggta cagtttcaga tttgaacgtt
    14401 caaaaggctg gatttcgttg tgcctacacc agaataaaac taactatgga ataggtggac
    14461 ttcatgatag aacattggcg cttagacaga ataagagtta caattcataa catttgcgta
    14521 caagattaac ttctaaatta atgaaaaata acctccctat taaatcccgt ctgctataca
    14581 aacgcttgtt aagctatgta aaaccttttt ggccagtttt attattagga gtattggcga
    14641 atatcctata ttcgggcatt gacgccggct ttacctatat gaccaagctt tttttggata
    14701 aaagctttat tactattgat ctgaattttg ttaaacaaat cccgctgatt gttttaatcg
    14761 gtattactct gagaggattg gtcagttctt taggcagtta ttgtatgaca tgggtggctc
    14821 gctcagtagt taaagtatta aggcagaccg tattttctca tattattcac ttaccggcgg
    14881 attattatga cgaagccaca tcaggtcagc ttctttcaaa aattttgtac gatgttgagc
    14941 aagtggcaca agtcagtgcg gatgccctaa cagattttat tcaaaatata tgtctggtca
    15001 tcggtttgct gaccgttatg atggttatat gttggcagct gtctttgatg tttttattaa
    15061 ctatcccctt tgtgggaatc attgttaatt atactaataa aagagtaaga cgaattagtc
    15121 acaaagtcca aaaaaccatg ggcgaagtca cagaaattgc cagtgaggca atcgagggtt
    15181 atcgagtggt tcgcatcttt ggtggtgaac ggtatgaaat aacaaaattt aataaagcaa
    15241 cagaatattc acgcaaaaac gatatgaaag ttgccataag caaggcgatt aatgtttcag
    15301 gcgttcaatt ggtgatcgct atcgggattg ccacgattat tatggctgcc attcatttat
    15361 ctactgtcat tactatcagt gccggttctt ttttggcaat tatcgcagcc atgttgcaat
    15421 taataaaacc tatgaaaact ctgactactc ttaacgcaac catacaaaga ggcttggctg
    15481 gtgcagaaag tgtatttaat ttgcttgatt tgcctttgga aagaaacaat ggtttgatat
    15541 taaaagaaaa gatacgtggt gaaattgagt ttaagcatgt ataccacgca taccgacagg
    15601 gtcaaaatat tttacatgat gtcaattttg taattgaagc aggaacgtct gttgctctgg
    15661 ttgggcattc aggaagtggt aaaacgacca tagccagttt attaccccgc ttttatgaat
    15721 tgagtcaagg tatgattact ttagatggca tgcccattca acagcttagt ctggaaagtt
    15781 tacgcaagca gatgtccttg gtcagtcaaa acgtgacact ttttaatgat actttggcta
    15841 acaacatagc ctatggtcgt tttgatgcga gccgagagca aattattact gcggctaaac
    15901 tggcctatgc tgatgagttt attaagcaat tacctgatgg ctatgatacc agggtcggag
    15961 aaaatggggt gttgttgtca ggcggacaaa ggcaaagaat agcgatagcc agggcaattt
    16021 tgaaagatgc tccaatttta atactcgatg aggcgacttc agctctggat agtgagtctg
    16081 agcattatat tcaggcggct ttggagcaag tgatgaaagg tagaactact ttaatcattg
    16141 cgcaccgatt gtcgactatt aagcatgctc acaagattat cgtattgcaa catggtcgta
    16201 ttgttgagca aggtagtcat caagaattac ttgatatgga tggtcattac gctcagttgt
    16261 ataaagtgca acaatttggc aggattaatg aggaagtggt agcttaatgt cattttttgt
    16321 gaacaggata tggtatggta accatttttt acagtggata ctggttccat tttcctggtt
    16381 atacagaatt gttatacgaa ccagacgatg gtatttacag cgtttctgcc aacagctgta
    16441 ccctatacca attattgtag tgggaaacgt gaccgtagga ggagtaggca agacgcctct
    16501 ggtcattgaa attgctaaaa aaatacagca aaaaggctta aaagtaggga ttgtaagccg
    16561 tggttacaaa gcagcaataa aacattttcc atacgaagta aaattaaatg attcagctga
    16621 attagtaggc gatgagccgc tcatgatggc aagaaaaatt aattgcccag tggttattgc
    16681 gcctaagcgc aatgaagcag taaggtacct tttagacaag cactcggttg aaattattat
    16741 cagtgatgat ggcttgcaac attataaaat ggggcgatct attgaaattg tagtaataga
    16801 tgggatgcga aaactgggta atggtttttg tctacccgct ggaccattaa gggaacctga
    16861 ttcacgatta aaacaagttg attttgttat tgttaatcaa ggtgctgcag aaggtactta
    16921 ttctatggaa ttaattccta aaaacatagt tcgattgtca actcaggaag aagtcagtaa
    16981 tgatttgttt acttctgaag tagcagctgt agcaggaatt ggtaacccgc aacgattcta
    17041 ttctacttta agtcaattag gtataaaatt taatccatat tcttatcccg atcatcatca
    17101 atttaaacct catgatttaa atgatatcga tctaccagtt ataatgacag aaaaggatgc
    17161 tgtaaaatgt tattcattta gttcagataa attatattat ttacccgttg aagcaaagtt
    17221 gaatgattcc ttttgggaag cattttggtc acatcaacaa ttacaaggtt attactaata
    17281 tgatgccaaa acgaatttgg ttattgctat tatccatgtt tttattttta agtggcagtg
    17341 tttttgcagt ggaagagcca gaggaagaca aagtagccca aacgaatgaa ccaaccgttg
    17401 gaagttgggt atttacaggt atggtcacca atgaaagcgg tgatcgatac ggctattttt
    17461 ttcagatgca aaggcaaggt actgattttt atgctaaaac cgcattaatt gacggccaaa
    17521 ccaaccagtt aattctgttt tatgaggcca acgaaaaaat agatagctcc actcagttga
    17581 actggcaagt tgggcgctca tttttgcgct acaatccgat caatgacagt tggatttttg
    17641 gcgtgaaagt cgaaaatgca aaaggattta attttaaagt agatatgtta aaacaggata
    17701 ataaagatgt tgaaacacag gtattaagac ctggggtaga gttgcaagcg gtacagacca
    17761 gtcgattaaa tgggcacgtg caaacgggag tagataataa agaacagttt gtaacaggta
    17821 ataaggcatg gttcagcaaa ttatggttta gcaaggatca aaattcccct catgatataa
    17881 gcactatttt ttgcagatta agtaatgata atggttttta ttctgcaaat ctcaaggaac
    17941 ctgatgcaac gggggctgcg gtagcaggtt ggcgagaccc ttcaggaaat aatgtcaaaa
    18001 tgtctcaatt tgtttccatt aaaaccctaa ccgataatca atgtttactt agcgtgggtt
    18061 tgcccaggtt gaagttaaaa ttagtcaata ccataaaaca agaggatgat tttcctctaa
    18121 cagttgcagg cttttctgaa gaaaatccaa aaggattttg ttttatatcc aaacaaactt
    18181 ttaagcaaat caaggagtca gcagtacaag cggttactaa tttgggatag tctaatttga
    18241 tttttctggc aggaggcaag taaataagct tgccaatagc atggcaaaag gaacaatcaa
    18301 aagggccagt tggtagtcag ccaggctgta ttggctttta tggttactga gtacatctaa
    18361 aaaaaatcca acgagtggtt gaagtaaggg agccgagagc attgccaagg tattggtgaa
    18421 gccagtacaa gtggacaaga attcaggtgg ggccaattca ttagaaattg aataggctag
    18481 catataagca ccacaggtta accccataga aaacattaaa atacctatca atagcttatt
    18541 ttgagttggt aaatataaaa caagtattaa taataacgca gttgacagac aagaagcatg
    18601 aatcagcggt tttcgtctat tgagatgtac cgaaatttga cccaataaag gacagcttaa
    18661 gccagcaccc agtaagacca ttgaagttag tatactggct gttttgatag tgcaatccag
    18721 ttttaattgt aaaaaaggaa cagcccacat ggcggcaaag acagtaatga ctgagaattc
    18781 cagacaaaca aaaaggccat taaaccaggc taatttattt tttagaatgg ggataatttg
    18841 ttgtttatat tgatgtggaa aagaaacgac tggcttgcta ttggggatac acaaccagca
    18901 taaactggcg atcaggaatc caatgattcc tgctatgtta ataaaataac gccatccaaa
    18961 atggctgatc acagaaccca tgccaatcat tcctaatact gtaacagtaa atcccaacgt
    19021 ttctgatagg cctatcataa aagcgtattg ttttaaggga aaatgttggc gtaacaaatg
    19081 gcttaaacca ataaaggcaa aggctgagcc agcgccaata attaaccgcc caaggaaaag
    19141 agtcgggagg ttatgtcccg aggcaaatac aaaacatccg atggcacaaa gagttgcatt
    19201 gaccgataac aaatatcggg tattgtagcg atcaaaaaga atcccgacag gaatttgaaa
    19261 agaagtatag acatagtaaa aggcgctact taaaagtcct gcgctgagtg cggaaatatg
    19321 ttcttcgtgc attattgcgc ctacaatgat ccccgaggat agttgcaaga agaattggaa
    19381 taataaaaaa aatactccta ccaaccaaat ggtgattttt gatttcttaa tagccgataa
    19441 attgttcaaa gtagtttgta ttatgttgaa attgatgg
//
LOCUS       DACVWI010000043        19396 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.043, whole genome shotgun sequence.
ACCESSION   DACVWI010000043 DACVWI010000000
VERSION     DACVWI010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 19396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19396
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.043"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            66..356
                     /locus_tag="JBH85_05745"
     CDS             66..356
                     /locus_tag="JBH85_05745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HAU0945701.1"
                     /translation="MKIRPLHDRVVVRRMEEERTTAGGIVIPDSATEKPMRGEIIAVG
                     AGKVLENGDVRALAVKVGDVVLFGKYSGTEVKVDGKELVVMREDDIMGVIEK"
     gene            378..2030
                     /gene="groL"
                     /locus_tag="JBH85_05750"
     CDS             378..2030
                     /gene="groL"
                     /locus_tag="JBH85_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HAU0945702.1"
                     /translation="MIMAKELRFGDDARLQMLAGVNALADAVQVTMGPRGRNVVLEKS
                     YGAPTVTKDGVSVAKEIEFEHRFMNMGAQMVKEVASKTSDTAGDGTTTATVLARSILV
                     EGHKAVAAGMNPMDLKRGIDKAVLAVTKKLQAMSKPCKDSKAIAQVGTISANSDEAIG
                     AIIAEAMEKVGKEGVITVEDGNGLENELSVVEGMQFDRGYISPYFINNQQNMSCELEH
                     PFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKICA
                     VKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTII
                     DGEGKATEINARIAQIRAQMEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKE
                     KKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKGDNDDQNMGINILRRAIES
                     PMRQIVTNAGYEASVVVNKVAEHKDNYGFNAATGEYGDMVEMGILDPTKVTRMALQNA
                     ASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMGGMGGMM"
     gene            2153..2593
                     /locus_tag="JBH85_05755"
     CDS             2153..2593
                     /locus_tag="JBH85_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HAU0945703.1"
                     /translation="MSKVIKKLEVALADTYALYLKTQNYHWHVTGPQFKSLHELFEMQ
                     YKELAEAVDQIAERIRIMGHKAPATFAEFNQLKTIKDGDSGLSANEMVSELAKDNMMI
                     VKDLNQAIKIAQENEDEGTVTILSDRVAAHEKAHWMLSASKEKK"
     gene            2820..4967
                     /locus_tag="JBH85_05760"
     CDS             2820..4967
                     /locus_tag="JBH85_05760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine synthase"
                     /protein_id="HAU0945704.1"
                     /translation="MAAPLAKDCFVFRFLFPVSLFISSILLFSIQPMVAKAILPIYGG
                     TPGVWTVCVLFFQFILLIAYGYVWLLSQIKKPAVWRLIHMVLVVLSFTAFPLLFHPAA
                     RDGQPEWVILHNLLIQLGLPLLVIGASAPLLQFAYSQTKSKGASDPYYLYISSNLGSL
                     GALLIYPWVIERFIGLTHQFYFWNFGFAIYSLLLVTVLFFTKYQPLMLTEKKEVDFLP
                     WREIAYWIFLSFVPCSLMLGVTLYITTDVAATPLFWVLPLALYLLSFVFTFTATPFIS
                     QKWISRNCLFFLVFTILGFIFGVSQIRVWQLVLFNLLSFFILALLCHGQLFARRPKPY
                     KLTLFYFCLSIGGVLAGIFNGVLAPNWFNYVYEYPLAILLSLFVLPLPKTNRGWWVPL
                     VVLGLLSLHYFIPTVPWFKSTTTFHILAILALGIIVIWHRNKINLVLSMLILFVFLYF
                     PPLQDKQILLKERNFYGVKQVFKKDDVHALISQSTLHGMQVMNGEKASYGRSSYYGAI
                     APIVDILKKEFHPLSATIMGLGAGTLLCQFRATDSIKVIEIDQQVIDLAKNNKLFTYI
                     RDCSPSAEIIKQDGRLALVNMPDASQDLLILDAFNSDAIPVHLMTLEAFTLYKKKIVE
                     DGVILVNLSNRHLQMLPVINAIGRALNMITLFLAHKGDKKLGQFNSEWAMLTSNQSLA
                     FQVMKGTNWKFVADDDQFLWTDDYSNIIPLLKW"
     gene            complement(5119..6315)
                     /locus_tag="JBH85_05765"
     CDS             complement(5119..6315)
                     /locus_tag="JBH85_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HAU0945705.1"
                     /translation="MHKKIFCQNLLDSALKNSIHAKRKQCLVRFLSDLMDYDTTLSVT
                     EIGKKLTSKTTVKSKIYAAQTFVNNFKLERDIVCIYKSLAHFFWSHAKEIVVLIDWTG
                     GCSEGYHVLEASIAAHGRSIPIYHEVHSESEQENAEIHRQFLLRLKEVIPSSLSVTII
                     TDAGFHREWFQQVLELGWDVIGRIYSLYCYQIEGETNWHKVKDILFEGIGKASALGKV
                     KLGKTKKAVEGYIYTYKEKLSGKVRKKKNKYPSHDKAHSNYYKNGWVLFSSLNKHARF
                     LVSYYKKRMQIEQNFKDIKNEQLGMGLRRNQSSGKTRVNMLFFLAVLLIMIAWWFGLI
                     IESLNKHRSYQANTIKNKRVRSFIHLARMAYRHEPELLNWDLFQNIMSDLKQQYHSFI
                     ECGALS"
     gene            complement(6666..8546)
                     /gene="parE"
                     /locus_tag="JBH85_05770"
     CDS             complement(6666..8546)
                     /gene="parE"
                     /locus_tag="JBH85_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HAU0945706.1"
                     /translation="MSENYTAEAIEVLSGLEPVQRRPGMYTDTTRPNHLAQEVIDNSV
                     DEVLAGFASRIIVTLHEDGSIEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSD
                     KNYSFSGGLHGVGVSVVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRE
                     TGTVIRFWPNGKYFDTTKISVKHLTHVLRAKAVLCSGLSMTFINKITNEEMNWCYEQG
                     LTDYLRQTLPEDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGG
                     THVNGLRSGLFEAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKE
                     RLSSRQTSGLVSNVIKDAFAIWLNQHRNQGEAIAALAIERAQKRLKQAKQVARKRVSQ
                     GPALPGKLADCLQTDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVD
                     SSQVLASQEIHDISVAIGVDPGSSDLEGLRYGKICILADADSDGAHIATLICALFLRH
                     FKPLVKAGHVFVAMPPLYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGL
                     GEMNPIQLRETTMDPNTRRLVQLTLDDEEQTEAIMDMMLNKKRAADRKLWLETKGNLA
                     EI"
     gene            8668..10488
                     /locus_tag="JBH85_05775"
     CDS             8668..10488
                     /locus_tag="JBH85_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HAU0945707.1"
                     /translation="MANSMQNTAKINQLSVAFKSLDKTVLALDKLSFSLNPGETLVLL
                     GESGCGKSLTSLAMMRLLPRAGVYGIDSQINIHGEDILNLPEKMMRELRGRRLAMIFQ
                     EPMTALNPVLTIGEQIAEVLKRHRSLTKEQIKERVILLLNEVEMPQPQMRIYQYPHQL
                     SGGQKQRVVIAMALACEPDILIADEPTTALDVTIQAQILALLKKIQKKHQMSLLLITH
                     DLGVAKTMADRICVMYAGQVVEQASVKDFFSKVSHPYVQQLLTSLPSFAKRNEKLSII
                     AGTVPSLESMPSGCRFHTRCIYAFERCHHEEPQLQEVEQRILRCHLYPDIKELPLLDK
                     NKISWVPSVEKEEIVFSVDDLSVHFIHKKGFLSRKKTIFKAVDGLSFTLSRGKTLALV
                     GESGCGKTTASRALLRLLPAAGGKIRYKDSDVLSMTGSGLRRYRKKVQIIFQDPFSSM
                     NPRMTVGEIIAEGMHAQGMKPSYIRKQQKSLIEQVNLPITSLHRYPHQFSGGQRQRIC
                     IARALATEPDILICDEPTSALDVSVQAQILNLLKELQQQRGISYLFITHNMGVVSYIA
                     DDVLVMKDGLAVEYGACEKVLQQPEHPYTRQLLNAVLDIE"
     gene            10577..14860
                     /locus_tag="JBH85_05780"
     CDS             10577..14860
                     /locus_tag="JBH85_05780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945708.1"
                     /translation="MKITRNQLNFKGVKEFGGCLTRNDEQIEFINKEIKLLKELIEFN
                     ILKGIDENKSQSLFDAVIEAVEKAGLDVEHELLIQFIQSTSEIIDSKSTDLPELVSLL
                     TVLIKSSNKYDKSELTRYCRLIDKLEKTDEKTLEQWIKILTILGRNVESVNGDLLFNV
                     QSRLEIHSVLLKDISSLFDYPPYPALDAFSEKLREYSRELKLYIDSFDRDPAGSRAPK
                     VNQEGILIKSREQILNEQFDTSQIQEVIAKIESLVDGSGLSCKGQYELAQQVVFINAI
                     GRDFPLKIANETYTDLTQLGRNKLQELSDFLIMEMRRLDISKEDKLRTQLKLLAVMRE
                     QYFRSTGIFFDTTQMISLLLSLHHQEQNVLMGVSRNENLSAPPAAILAAMQWVLADGG
                     TVDLCFANHGLIAQDYLEKGDRDFFTCLGIPSSVVEANSESGTYQVGGINYSTLSDLT
                     SYRSHAVIEDEELSMDRCGYPVSSYLILNHIDFSNLDDRTFSHFSSLYDYYKGKGRVV
                     RITEIEETVGEVVGQISRFDMDVGYRVFPARKNLQEELNTQSLAERRREEAVKQYFIQ
                     SVSNIQQAVLNQLEEWQAFLHLIYPKSEWRQLDNELFAQRNELIDSLKKQWTKCLEDS
                     DPKKMYPNPYVRRDVFQRLQTRELEKAIQAYEKSVSSIWNLNRDQLKAKTENRFSSDS
                     VNALRCKYLEEVDLSEQIKWSKLSARLKKKEATQEKKRSHRHLESAVEVTGAMLSYHD
                     GDLEPYRLAFVHSQLKLWARDISKEINNSSLPASVKQGLIERANNADNFLALELLLID
                     YESRWLDKEKLSEKFRMQPIISDMLRVYKQAGFEEHKELKILKETYLDSTATQIIHHL
                     DKTLAWAKPENRGPWYWIERSAVKKAANEILVLANGVKQARDSLSKQIAIKKLYRDLC
                     KHQAQLEDVWIFSFDHKNTRDLINQTLNTMDSLTVLGRDEGGLDINFIQECKEEAQYY
                     LLGEKFSSVLEDFEKNNSQILTAHSEWQEVKRQLQQKQNESRKVYTLNEMYYVLCKKI
                     NELSISYSLLREPLVQLRGMIRTLWNSFQEKHQDIIDESKYFDFKARKIKEELEGIEG
                     YSVFNVKVKKGYTGFNEYVELIIEGEGTSALFEGFMQYKSRLTELKEAYRQLEFSLKQ
                     NRLELLNLNRIHAKHLPFLKDRIKGNPEVELFPEQCRSKVKEILTLKEWINGQIPENL
                     SQFPENMQNHFLDRNTLKSMDRNTMTMEQIDKIKDEQLKAELTELYNKMHKVGEEQYT
                     SWFSTVTRRIVGLIPGMFRQEETEDDWRYQFNELQGRSDSILQSLLTKKIMTKYDALV
                     NEMVLIQSNLAQQMDSGNKKIQFLSDKILEEERKTNVIIKRFDNLNDFYDFEAKLKRF
                     KTAPPIVPVNEVQIESKNRILSYGEGAFSNPEEEFQTDSVMQPPMVFNI"
     gene            complement(15219..16928)
                     /locus_tag="JBH85_05785"
     CDS             complement(15219..16928)
                     /locus_tag="JBH85_05785"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094730.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HAU0945709.1"
                     /translation="MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMP
                     LGLRVLRKVENIVREEMNKIHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQR
                     EYCFGPTHEEVITDIMRNELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDA
                     YSFHLSLESLQETYKDMYQAYCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGE
                     DLIFYSDASDYAANIEQATSLKPLKANQSCNETITLVDTPNQKTIDEVASFLGIASNQ
                     TIKTLIVKGKEHPMVALVLRGDDELNEVKATKHPLVHSPLSFIDEELILKTLKTPLGS
                     IGPVKLNIPVIVDHQALAMPSFVCGANQADKHFINAAWERDAKYDDAYDLRNVKEGDP
                     SPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQLQTMIMGCYGLGITRVVA
                     AAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAESLYQQLKSHGIDVLLDD
                     RNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQLINLDKVVNFIIEL
                     INK"
     gene            17090..>19396
                     /gene="ankN"
                     /locus_tag="JBH85_05790"
     CDS             17090..>19396
                     /gene="ankN"
                     /locus_tag="JBH85_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkX"
                     /protein_id="HAU0945710.1"
                     /translation="MVKIMPNLPGLYFLQAYPREEIWRLFVDGRFWSKENGWRGYESR
                     EPGCLNAALESLCSIALQVEKSGEEFELSVDLIKRIHKKCGKKVEELQEKNPGELRTD
                     EPVSFGIPAGRASIKGIEEFLSLVFLTEGEAEFGPGKAGPFGPRFDKNYFKNLNPEQI
                     PDLAKQIYFDMCKYGHSNTNHFYLAVMKNVDVYLEKITQSYNQEIKTAETLDEKLKII
                     VKHIRMYEVLHPFRDANGRTFVNNLLNILLMQQGLPPATFYEPNVFDLYSAEELVVVV
                     KEAIFNTVEIIEQSKRKTPITLYGYHSSLEEQTKFRDMLDSPAYEKIKHMDFSDLNPE
                     KMHRKTQKCLSSLNEQYPLHRGAIYLSDPGEIKLLLSNHNESQINQQIEQGAPPIYVG
                     KTPAHLAVISGNMAMLDELIAKKADLSLQDYDGKTALHYAAECGNMQIMGKILKVVLS
                     QEDAIKVLNIKDNHGKTAFHYAAEFGTPELISALTTTEVIQINEPDNSGSSAITLAYK
                     NHKLKIFDELLNSGADISDELLEAIWARKDKETLGKVITKNEKILLNKEAFRIAISLG
                     SVSLVKKFLRAGVDIDIPLTKDKATPLMLSINSGNPKLVSYLLKKGANTRLTDTSGNS
                     VLHYVFYSKAENREALANIITEKDKKLINQPNTNGNPPLYNAVVVNDLKMATILLEMG
                     ARVDFEDRLGNNILHSAMRRCDLPIILDIVKKDSTLLHNRNSERRNPFHQALHEMHTF
                     PSSKETEEIHFMNLSDLLLKEGVDLNKKD"
BASE COUNT         5937 a         3423 c         4040 g         5996 t
ORIGIN      
        1 ttgtttgccc taaggaaagc aatacttaaa tgatttaaag tttaatttaa tcaggagaga
       61 aaagtatgaa aattcgtcct ttacacgatc gcgttgttgt tcgtcgtatg gaagaagagc
      121 gtaccactgc tggtggtatt gttattccag atagtgctac cgagaaacct atgcgtggtg
      181 agatcattgc tgtcggcgct ggcaaagtat tggaaaacgg tgatgttcgt gctttagcag
      241 ttaaagtagg tgatgtggta ttgtttggca agtactctgg tactgaagtt aaagttgatg
      301 gaaaagaatt agttgtgatg cgcgaagacg acatcatggg tgtaatcgag aagtaatcta
      361 attgtttaaa ggagacaatg ataatggcta aagaattacg ttttggtgat gacgctcgcc
      421 tacaaatgct tgctggtgtt aatgcattag cagatgcggt tcaagttact atgggtccac
      481 gtggccgtaa tgttgtattg gaaaaatctt atggcgctcc tactgtaact aaagacggtg
      541 tgtctgttgc caaagaaatt gaatttgagc atcgtttcat gaacatgggc gctcaaatgg
      601 ttaaagaagt ggcttctaaa acttctgata ctgctggtga tggtactact actgcaacag
      661 tattggctcg ttctattctt gttgaaggtc acaaagcagt tgctgctggt atgaatccaa
      721 tggatctcaa acgcggtatt gataaagcag tattagcagt taccaaaaaa ttacaagcta
      781 tgtctaagcc atgcaaagac agcaaagcta ttgctcaagt tggaactatt tctgctaatt
      841 ccgatgaagc gattggtgct atcattgctg aagcaatgga aaaagttggt aaagagggtg
      901 ttattaccgt tgaagatggt aatggattgg aaaatgagct ttctgttgtt gaaggtatgc
      961 aatttgatcg cggttacatt tctccatact tcatcaacaa ccagcaaaac atgagctgtg
     1021 aacttgagca tccattcatt ttattggttg acaaaaaagt ttccagtatt cgtgaaatgt
     1081 tgtccgtatt ggaaggtgtt gcaaaatctg gccgtccttt attgatcatc gcagaagatg
     1141 ttgaaggcga agctttagct actctggtag ttaacaacat gcgcggtatt gtaaaaatat
     1201 gtgctgtcaa agcgcctggt tttggtgatc gccgcaaagc gatgctgcaa gacattgcta
     1261 ttttgactaa gggtcaagtg atttctgaag aaattggcaa gagcctggaa ggtgctactc
     1321 tggaagatct tggtagtgct aagcgaatcg ttgttaccaa agaaaacact actatcattg
     1381 atggtgaagg aaaggcaact gaaattaatg ctcgtattgc tcaaattcgt gcacaaatgg
     1441 aagaaaccac ttctgattac gatagagaaa aattacaaga gcgcgttgct aagttagctg
     1501 gtggtgttgc tgttatcaaa gttggcgctg ccacagaagt tgaaatgaaa gagaagaaag
     1561 ctcgtgttga agatgctctt catgctactc gcgctgcagt agaagaaggt atcgttgccg
     1621 gtggtggcgt tgccttgatt cgtgctcaga aagctcttga ttcattgaaa ggcgataatg
     1681 acgatcaaaa tatgggtatc aatattttac gtcgcgctat tgaatctcca atgcgtcaga
     1741 ttgttactaa cgcaggatat gaagcttctg ttgtagtaaa caaggtagct gagcacaaag
     1801 acaactacgg tttcaacgct gcaactggtg aatacggtga tatggttgag atgggtattc
     1861 ttgatccaac taaagtaacc cgtatggctc tgcaaaatgc agcttctgta gccagtttga
     1921 tgttgactac tgaatgtatg gttgctgatc tgcctaagaa agaagaaggt gttggtgccg
     1981 gcgatatggg cggcatgggc ggaatgggtg gcatgggcgg aatgatgtaa ttttctcccg
     2041 gttatccaat aaaaaacccg ctgtaaaggc gggtttttta ttaatgtcta ttttgttctt
     2101 tgactgtttt gaactatcct taataacgtg aataaataac aaggaaagaa taatgagtaa
     2161 agtaattaaa aagctggaag tcgctcttgc tgatacttat gcgttgtacc tgaaaacaca
     2221 aaattaccat tggcatgtta ctggacctca atttaaaagt ttgcatgaat tatttgagat
     2281 gcaatataaa gaactggcgg aagcagtgga tcaaattgca gagcgaattc gaatcatggg
     2341 tcataaggct cctgctacct ttgctgagtt taatcaattg aaaacgatta aagatggtga
     2401 ttccggattg agtgctaatg agatggtcag tgagttggca aaagataata tgatgatagt
     2461 aaaagattta aatcaggcga ttaaaattgc ccaggaaaat gaagacgaag gtactgtgac
     2521 tattctaagc gatcgagttg cggctcatga aaaagctcat tggatgttat cagcctccaa
     2581 ggaaaagaaa taaagtattc attttatgta tcagttgata tggaatcagt gcctatcttc
     2641 aagtaatggg atgtttacaa aagcttcaaa aaccataaat ggatttttcc atcagtcaat
     2701 atggaataat atgtgtttgt gaaacatccc tatcaattat gtttataaat tgttttgcag
     2761 agtaataatt catccttgta tgaacgagag tgtagtcgta aaatgatcga ttcattcatt
     2821 tggcagcacc attggctaag gattgctttg tgtttcgatt tttatttcct gtcagtcttt
     2881 ttataagttc cattctccta ttcagtattc aacccatggt tgcaaaagca atacttccaa
     2941 tttatggggg gacaccaggt gtgtggactg tttgcgtgct tttttttcaa tttattctgc
     3001 tcattgcata tggctacgta tggcttttaa gtcagattaa gaaacctgct gtttggcgtt
     3061 tgatccatat ggttttggtt gttttaagtt ttacagcatt tccattgctg tttcatcctg
     3121 cagccaggga tggacaacct gaatgggtga ttctgcataa tttgttaatt caactgggtt
     3181 tgcctttgtt agtgattggt gcttctgctc ctttattaca atttgcctat agccagacaa
     3241 aaagcaaagg ggcctcagac ccttattatt tgtacatatc cagtaatctt ggaagcttgg
     3301 gtgccttgct tatttatcca tgggttatcg agcgatttat tggtttgact catcaatttt
     3361 atttctggaa ctttggattt gctatttatt cgctactgtt ggtaacagtc ttgtttttta
     3421 caaaatacca acccttaatg ttaactgaaa aaaaagaggt ggattttttg ccttggcgag
     3481 agatagccta ttggattttt ttgagttttg tcccttgcag tttgatgctg ggagttactt
     3541 tatatatcac aactgatgtt gccgcaactc ccttattttg ggttttgcct ttagcgcttt
     3601 accttttgtc atttgtattt accttcacag caaccccctt tatttcacaa aaatggattt
     3661 ctcgtaattg tttgtttttc ctggttttta caattcttgg gttcattttt ggagttagtc
     3721 aaatcagagt gtggcaattg gtgttattta atctgttaag tttttttatt ttggctttac
     3781 tgtgtcatgg tcagttattt gcacgaagac ccaagccata taaactcact ttgttttatt
     3841 tttgtttgtc tatcggagga gttttagcag ggatttttaa tggagtttta gcgccaaatt
     3901 ggtttaatta tgtttatgaa tacccgttag ccattttatt aagtttattt gttcttccgc
     3961 tgccgaaaac taaccgagga tggtgggtgc cattagttgt tttgggtttg ctgtcgcttc
     4021 attatttcat tcctaccgtt ccctggttta aaagtactac cacttttcac attcttgcta
     4081 ttttggcact tggaattatt gtgatttggc atcgtaataa aatcaatctt gtactatcca
     4141 tgctcatttt atttgttttc ctttactttc ctccgttgca agacaaacag attttactca
     4201 aggaaagaaa tttttacggc gtcaagcaag tcttcaaaaa ggatgatgtg catgcattaa
     4261 taagccaatc aacccttcat gggatgcagg taatgaatgg ggaaaaagca agttatggaa
     4321 gaagctccta ttatggggcc atagctccaa tagttgatat tttgaagaag gaatttcatc
     4381 cgctttctgc gacgattatg gggttgggtg caggaacact actgtgccaa tttcgggcaa
     4441 ctgattccat aaaggttatt gagattgatc aacaagtaat tgatttagct aaaaataata
     4501 aattattcac atatatacga gactgctcgc cttcagctga gattattaaa caggatggac
     4561 gattggcctt ggttaatatg ccagatgctt cacaggattt gttaattttg gatgcgttta
     4621 attcagatgc tattcctgtc catttgatga cacttgaagc tttcacctta tataagaaga
     4681 aaattgtcga agatggagtt attttggtta atctaagtaa cagacatctg caaatgctcc
     4741 cggtaattaa tgcaattggg cgagctttga atatgataac tttattttta gcgcataagg
     4801 gagataagaa gttggggcaa tttaattcag agtgggctat gttgacctca aatcaatcct
     4861 tggcgtttca agtgatgaaa ggaacaaatt ggaaatttgt agcagatgat gatcagtttt
     4921 tatggactga tgattattct aatattatcc ccttgctgaa atggtagggt aaaaaggtaa
     4981 gctatcaaat tcaattgtat ccttgcttta tcgtgatgcg ggctatccat agtaactgtt
     5041 catggggtat gtaattaagg aatattaggt cctctgtctt tcccgcgaag gcgctgagtg
     5101 atcctgtcat tattttactc agctcaaagc gccacattca ataaatgagt gatattgctg
     5161 tttcaaatca ctcattatgt tttgaaataa atcccaattc agtaattccg gctcatgtcg
     5221 ataagccatt ctagcaagat gaataaaaga gcgaactcgt ttgtttttta tagtatttgc
     5281 ttgataagag cgatgtttat taagggattc aattattaaa ccgaaccacc aggcaatcat
     5341 aattaataaa acagcaagaa aaaaaagcat attaactctg gtttttcctg aagattgatt
     5401 tcgtcgtaat cccattccca gttgttcatt ttttatgtct ttgaaatttt gttcgatttg
     5461 cattcttttt ttgtaataag atacgagaaa tcgagcatgc ttatttaatg agctaaagag
     5521 aacccaccca tttttataat aattggaatg agctttatca tgagaaggat atttattttt
     5581 cttttttcgt accttgcctg agagtttttc tttataggta taaatataac cttccaccgc
     5641 cttttttgtt tttccaagct tgaccttacc taatgcagaa gcttttccaa taccttcaaa
     5701 aagaatatct ttcactttgt gccaatttgt ttctccttca atctgatagc aatacaaaga
     5761 atagatgcga ccaataacat cccagcctag ctcaagcacc tgttgaaacc actcacgatg
     5821 aaaacccgcg tctgtaataa ttgtcacgga caaactcgaa ggaataacct ctttcaagcg
     5881 taataaaaat tgacgatgaa tctctgcatt ttcttgctct gactcagaat gaacttcgtg
     5941 atagattggt attgagcgac catgagctgc aatactagct tccagaacat gatagccctc
     6001 gctacatcct ccagtccaat caattaaaac aacaatctct tttgcatggc tccaaaaaaa
     6061 atgggccaga ctcttataaa tgcaaacaat atccctttcc agtttgaaat tattcacgaa
     6121 tgtttgagcc gcatatattt tacttttaac tgtcgttttg gatgttaatt ttttaccaat
     6181 ctctgtaacg gataatgtgg tatcgtagtc cattaagtca cttaaaaagc gaaccaaaca
     6241 ttgttttctt ttagcatgaa ttgaattctt taatgcgcta tccaataaat tctggcaaaa
     6301 tattttcttg tgcatacaac ttccgattag ttttgtcttg gtaaacaaat ttgatcatga
     6361 atccgtatgc acttcaattt cttttcccat ctttgttaat gtacacttta aaaaagtaac
     6421 tgctcaatta aatgacagga ttcctcagcg cgaaggcggg aatctatcca taaagctagc
     6481 acaagggttg atttttagtt agcttcccgc cttcgcggga aagacaactc aaataaatag
     6541 gcttataagc agaaaaattt gtataccccg tgtacggtta ctatccatat taccaaggat
     6601 aagatagaaa agtagccgat aatgactatc gctaaagggg tggccaattg ctaatgcacc
     6661 ttagctcaaa tttcagcaag gtttcctttg gtttctagcc agagttttct gtcggcggcc
     6721 ctttttttgt tgagcatcat atccataatg gcttccgtct gctcttcatc atcaagagta
     6781 agctgtacca gacgccttgt attggggtcc attgtggttt ctctaagctg aatgggattc
     6841 atttcaccta atcctttgaa tcgctgcaca ttcacttttg attttgtggt ttgactgaga
     6901 tgttgaacga ttctattttt ttcctcatca tccagggcat agtgaatcag cttacctgca
     6961 tcgattcgat agagcggggg catggctaca aaaacatggc ctgctttaac cagaggtttg
     7021 aagtgtctta aaaacaaggc acatattagt gtggcaatat gagctccatc agagtctgca
     7081 tcggcaagaa tacagatttt tccatagcga agaccctcaa gatcgctgga gccaggatct
     7141 acacctatag caacagatat atcatgaatt tcctgggatg ccagaacttg tgaagaatcg
     7201 acttcccatg aattaagtat tttcccacgt aagggtaaaa tggcttgata atctttattg
     7261 cgggcttgtt tggccgaccc tcctgccgaa tctccttcaa ccaggaatag ttccgcttga
     7321 cttaagtccg tttgcaagca gtcggctaat tttccaggta aagcaggccc ttggctaaca
     7381 cgtttgcgtg ccacttgttt ggcttgcttt agccgtttct gtgcgcgttc tattgcgaga
     7441 gctgctatgg cttcaccctg gttgcgatgc tgattcaacc aaattgcaaa agcgtctttt
     7501 atgacattac tgactagtcc tgaggtttgg cgtgaactca agcgctcttt ggtttgcccc
     7561 gcaaattgcg gctctttcat tttgattgat aaaacatact ggcatgattc ccatagatca
     7621 tccgctgtca attttactcc acgaggaaga aggtttctca gctcacaaaa ttcagacatg
     7681 gcttcaaata atcccgaacg caatccattg acgtgcgtgc caccttgtat tgtcggaatt
     7741 aaattcacat aactttcatt taaattgcca ttggcagagt ctgaccaggc caaagcccaa
     7801 tcaacagttg cttcatcact tttgaatgct ccggcaaaag gttcttcagg caaatagtct
     7861 tcgggcaagg tttgccgtaa ataatcagtt aaaccttgct cataacacca gttcatttct
     7921 tcattagtga ttttattgat aaaggtcatg gacaagccac tacacaatac cgcttttgct
     7981 cttaatacgt gagtcaggtg ttttacagaa atttttgtag tgtcaaaata tttgccatta
     8041 ggccaaaaac gtataacagt cccagtctct cttttttttg taaccccggt ttcatttaat
     8101 tcacataatt tgtcgccatt agcaaaggtc atttgataaa tgatcccatt gcgctttatg
     8161 gtgacgtcaa gtcgttctga caaggcattt accacggaca ccccaacgcc atgcaagccg
     8221 ccagaaaagc tgtaattttt atctgaaaac ttacctccgg catgaagtcg agtcataatg
     8281 acctcgacac cacttaagcc cagttgagga tgcaaatcta ctggcatacc tcggccatca
     8341 tcctcgactt caatagaacc gtcttcatgt aaagtaacaa taatacggct ggcaaatcca
     8401 gcaagtactt catcgacgct attatcaatc acttcctgag ccaaatggtt ggggcgtgtc
     8461 gtgtcggtat acataccggg acgtcgttga acaggctcaa gaccacttaa gacttcaatc
     8521 gcttccgcag tgtagttttc tgacatgggt attcactcaa atattaattg tgcttattct
     8581 atcataaaca ttcttttgct cagagtggta tggtattttt attgctacta tcacccatct
     8641 cttgttagag tgtagttatc attatttgtg gcaaattcca tgcaaaacac cgctaaaatt
     8701 aatcaattgt cagttgcttt taaaagcctt gataaaacag ttctggcttt ggataaatta
     8761 agttttagtc taaatccagg ggagactttg gttttactgg gagaatcagg atgtggtaaa
     8821 tcattaactt cattggctat gatgagatta cttcccagag ctggtgtcta tgggattgac
     8881 agccaaatca atattcacgg tgaagacatc ttaaatttac ctgagaaaat gatgcgggag
     8941 ttaagagggc gcaggcttgc gatgattttt caagagccga tgacggcttt aaatcccgta
     9001 ttaacgattg gagagcagat agctgaggtt ttaaaaaggc atcggtcttt gacaaaagag
     9061 caaataaaag aaagagtaat attgttattg aatgaggtag aaatgcctca accacaaatg
     9121 agaatttatc aatacccgca tcaattgtct ggtggtcaaa agcagagggt ggttattgct
     9181 atggcgttgg cttgcgagcc agatatcctt attgccgatg aacctactac ggctttggat
     9241 gtgactatcc aggctcaaat attggccttg ctaaaaaaaa tacaaaagaa acatcagatg
     9301 agtttgttat taattactca tgatctgggc gtggctaaaa ccatggctga tagaatttgt
     9361 gtgatgtatg cagggcaggt agtggaacag gcctcagtaa aagatttttt ttcaaaagtg
     9421 agtcatcctt atgtccagca acttttgaca tccttacctt catttgccaa aagaaatgaa
     9481 aaactgtcta tcattgcagg cacggtacct tctttggagt ctatgccttc aggttgtcgt
     9541 ttccatacac gctgtattta tgcttttgaa cgttgtcatc atgaggagcc tcaattacaa
     9601 gaagttgagc agcgtatctt gagatgtcat ttgtatcctg atatcaaaga attgccatta
     9661 ctggataaaa ataaaatcag ttgggttcct tccgttgaaa aagaagagat tgtgttctct
     9721 gtagatgatt tatcagttca ttttatacat aagaaaggat ttttgagtcg taagaaaacc
     9781 attttcaaag ccgttgatgg tttgtcgttc actctctcca gaggtaaaac attagctttg
     9841 gttggagagt cgggctgtgg gaaaacaact gcaagccgtg ctctgttgag gttattgcca
     9901 gcggccgggg ggaaaatcag atataaggat agtgatgtac tgtctatgac aggaagcggt
     9961 ttaagaagat acagaaaaaa agtacagatt atttttcaag atcctttttc ttctatgaat
    10021 ccacgcatga cagttggaga aatcatcgca gaagggatgc atgcacaggg aatgaagcct
    10081 tcttacatca ggaaacaaca aaaatcccta attgagcaag tgaacttacc aattaccagt
    10141 ctgcatcgat accctcatca gttttccggt ggacaaagac aacggatctg cattgcgaga
    10201 gctttggcga cagaacctga tattttaatc tgcgatgagc cgaccagtgc tcttgatgtt
    10261 tctgtacagg cacaaattct taatttatta aaggaattgc aacagcaaag aggtatttcc
    10321 tatttgttta taacccataa catgggggtc gtctcttata tcgctgatga tgtattagtc
    10381 atgaaagacg gcttggctgt tgaatatgga gcatgcgaga aggtacttca gcaaccagaa
    10441 cacccttata ccaggcagct gttaaatgct gtattggaca tcgagtaata tttcaaattt
    10501 tcttttacat ttatctgcta cattttatgc agcttatata taatgagggc attctatttt
    10561 tcagggaatt cagggcatga aaatcactag aaatcaatta aatttcaaag gtgtaaagga
    10621 atttggtggt tgtttaacaa gaaatgatga acaaattgaa ttcattaaca aagagatcaa
    10681 gctgttaaag gaattaatcg agttcaatat tctgaaggga atcgatgaaa acaaatcaca
    10741 atccttattt gatgctgtga ttgaggcagt ggaaaaggct ggcttggatg tcgagcatga
    10801 actgctcata caatttattc aatccacatc agagattatt gactccaaat cgacagacct
    10861 tcctgagttg gtttccttat taacggtact cattaaatca agtaataagt acgacaaatc
    10921 agaattgacc agatattgcc gtcttatcga taagcttgaa aaaacagatg agaaaacctt
    10981 agaacaatgg ataaaaatac tgactatact tggaagaaat gttgagagtg taaatggtga
    11041 tttattattc aatgttcagt ctcgccttga gatccatagt gttttactaa aagatatttc
    11101 ttctttattt gattatcccc cttatcccgc attagacgct ttttctgaga aattgcgtga
    11161 atactcaaga gagttaaaat tatatattga ttcatttgat agagatcctg ccggatccag
    11221 ggctcccaaa gtgaatcaag aaggtattct gattaagtcg agagaacaaa ttcttaatga
    11281 gcaatttgac acaagtcaaa ttcaagaggt tattgccaag attgaaagtt tggttgatgg
    11341 atcgggttta tcgtgtaaag ggcaatatga attggctcaa caagttgtat ttatcaatgc
    11401 aataggcagg gattttcctc taaaaatagc gaatgaaacg tatactgatt taacccaatt
    11461 aggcaggaat aagttgcagg agttgtctga ttttttaatt atggagatga gaagactcga
    11521 tattagcaaa gaggataaac tgcgaactca actgaagtta ctcgcagtga tgcgagagca
    11581 gtattttcgc agtaccggca tattctttga tactacacaa atgatttctc ttttattgtc
    11641 tttacatcat caagaacaaa atgtgttaat gggagtcagt cgtaatgaaa acctgagcgc
    11701 tccacctgca gcaattcttg ctgccatgca atgggtgctt gctgatggtg gtaccgtcga
    11761 cctgtgtttt gcaaatcacg gattaatagc tcaggattat cttgagaagg gtgatagaga
    11821 tttctttacc tgtttgggta taccttcctc tgtggtagag gcgaattctg agtctggtac
    11881 ttaccaggtt ggaggtatta attactcaac actttctgat ttgacttctt atcgctcgca
    11941 cgcagtgata gaggatgagg aactgtctat ggatagatgc ggctatcctg tctcaagcta
    12001 ccttattctt aatcatattg atttttctaa tttagacgat agaactttct ctcatttttc
    12061 ttcactgtat gattattata aagggaaggg gcgtgtcgtc aggataaccg aaatagagga
    12121 aaccgttggt gaagtggttg ggcaaatcag ccggttcgat atggatgtgg ggtatcgggt
    12181 tttccctgcc aggaagaatt tgcaggaaga attaaatacg caaagtttgg ctgaaagacg
    12241 aagagaagaa gcagttaaac agtatttcat acaatctgtt tctaatattc aacaagcggt
    12301 attaaatcaa ttggaagaat ggcaagcatt tttgcattta atttacccca agtcagaatg
    12361 gagacagctg gataatgaat tatttgcgca aagaaatgag ttgattgatt cgctaaagaa
    12421 gcaatggaca aagtgtttgg aagattctga tcctaaaaaa atgtatccaa acccctatgt
    12481 ccgtagggat gtttttcagc gcttacaaac cagagaattg gaaaaggcaa ttcaagccta
    12541 tgaaaaatct gtttccagca tttggaacct aaatcgagat cagttgaaag caaaaacaga
    12601 aaatagattc tccagtgact cagtcaatgc attgcgttgt aaatatttgg aagaggtcga
    12661 tttaagtgaa caaataaagt ggagtaaatt atcagctcgt ttaaagaaaa aagaagcaac
    12721 tcaggagaaa aagcgcagtc atcgtcacct tgagtcagca gtagaagtaa ctggtgcgat
    12781 gttaagctac catgatggtg atttagagcc ctatcgatta gcttttgtgc acagccaact
    12841 gaaattgtgg gccagggata ttagcaaaga aatcaataac tcctcattac ctgccagtgt
    12901 taaacaaggc ctaatagaga gagctaataa tgcggataac tttcttgctt tggagttgtt
    12961 attaattgat tatgaaagca gatggttaga caaagagaaa ttgagcgaaa aattccgcat
    13021 gcaaccaatt atcagtgata tgctgagagt gtataagcaa gcaggttttg aagaacataa
    13081 agaacttaag attttaaaag aaacctatct tgatagtaca gctacacaaa tcattcatca
    13141 tcttgacaag acattggctt gggctaagcc tgaaaacaga ggaccttggt attggattga
    13201 gcggtcagca gtaaaaaaag cggcgaatga aatattggtt ttggccaacg gagtaaaaca
    13261 agcaagagat tctttatcca aacagattgc tatcaaaaaa ttatatagag acttatgcaa
    13321 acatcaagct caattggagg atgtttggat tttttcattt gatcataaaa atacacgtga
    13381 tttgattaat caaacattaa ataccatgga cagtttaact gttctgggta gagatgaggg
    13441 tgggctggat attaatttta ttcaggagtg caaagaagaa gctcaatact atttgttggg
    13501 agagaaattc agctctgttt tagaagactt tgaaaaaaat aacagtcaga tcttaactgc
    13561 tcattctgaa tggcaagagg ttaaaaggca acttcagcaa aagcaaaatg agagtcgcaa
    13621 ggtttataca ttgaatgaaa tgtattatgt tctttgtaaa aaaatcaatg aattatccat
    13681 ttcatattcc ctattgcgtg agcctctagt gcaattacga gggatgattc gtactctttg
    13741 gaatagtttt caggaaaaac accaggatat catagatgaa tcgaaatatt ttgattttaa
    13801 agcgcgaaaa attaaggagg agctggaggg aatagaagga tattctgttt ttaacgtgaa
    13861 agtaaaaaaa ggatatacag gatttaatga gtatgttgag ttaattattg aaggagaagg
    13921 gacatccgca ttatttgaag ggtttatgca atataaatcc aggttaactg aattaaaaga
    13981 ggcgtaccgt cagttagaat tttctcttaa gcaaaataga ttagagttgc tgaatctgaa
    14041 tagaatccat gccaaacact tacctttttt gaaagatcgc atcaagggca atcccgaagt
    14101 agagttgttt ccagagcaat gccgaagcaa ggtgaaggag attttaacac taaaggagtg
    14161 gattaatggt caaatacctg aaaatctcag tcaatttcct gaaaacatgc aaaatcattt
    14221 tcttgacaga aatacgttaa aaagcatgga tagaaatacg atgaccatgg agcaaatcga
    14281 taagataaag gatgagcagt taaaagccga gcttacagaa ttatataata aaatgcataa
    14341 ggtcggtgaa gaacagtaca catcatggtt ttctacagtg actcgcagga ttgttggttt
    14401 gattcccggc atgttcagac aggaagagac agaggatgat tggaggtatc aatttaatga
    14461 attacaagga cgctcagata gcattttgca atcgttgtta actaaaaaaa taatgacaaa
    14521 atatgatgcg ttggttaatg aaatggtttt aatccaaagc aatctggcac aacagatgga
    14581 ctctggtaac aaaaaaattc aatttttaag cgataagatt cttgaagaag aaaggaaaac
    14641 caatgtaatt atcaagcgtt ttgataacct caatgatttt tatgattttg aggctaaact
    14701 aaaacgtttt aaaaccgcgc ctccaatagt cccagtaaat gaggttcaga tagaatctaa
    14761 aaacaggata ctttcttatg gtgagggggc gttttccaat cctgaagagg agtttcagac
    14821 ggattctgta atgcaacctc caatggtttt taatatttaa cgtcagtgat ggataaggat
    14881 tataaaacca gttgatatcc aaggttcgtt cgggctgagg agatgcataa gcatcgtctc
    14941 gaagccttgg cgcacaacat taaatcccgt acaaggcttc gagacggcat aaatgcctcc
    15001 tcagcccgaa cgattcgagg tgacaactga tcttatccat aactcacatt aatgaatacc
    15061 aaacgagata tggtgaacct gggcaaagaa ctttatttgt gattctttaa atacaagtcc
    15121 tgtattattg gcttctcttt aatgcggttc aggttaattt ttaacccaaa ccgcattgtt
    15181 aaaatacaga taatgcaggg agtgaggagt agaaaacctt atttattaat taactcaata
    15241 ataaaattaa ccaccttatc cagattgatc agttgagttt cgcttgaagt tcgggatttg
    15301 tactcaatac agccttgttc cagatttctc tcactgacca ctaatcggtg aggaatccct
    15361 atcaagtcat tatcagcaaa taatacaccc gctctttcat tacgatcatc gagtaataca
    15421 tcgatgccat gagatttgag ttgctgataa agtgactctg cctgttcttt aacggcttgt
    15481 gatctcgcgc cattaagagg aataatattg acttgaaaag gtgctaaagc ttgaggccag
    15541 atgattccgt gttcgtcatg atgctgctca atcgcggcag cgactacacg agtgatccct
    15601 aacccatagc agcccatgat catggtttgt aattgtcctt gctcattgat aacagacgca
    15661 ttcatggctt tggcgtattt atcacccaat tggaaaacgt gtcctacctc tattccacga
    15721 cagcagtgaa gcgttcctct tccatcaggg cttggatcac cttctttaac gttgcgtaaa
    15781 tcataggcat catcgtattt tgcatcgcgc tcccatgcag cattaataaa gtgtttatcc
    15841 gcctgattgg cgccacagac aaatgaaggc atggccaacg cttgatgatc aacaatgaca
    15901 ggaatattta atttgactgg tcctatggag cctaagggag tttttagcgt ttttaaaatc
    15961 agttcttcat caataaagga caggggagag tgaactaagg gatgtttggt tgctttgact
    16021 tcattgagct catcgtctcc tcttaagacc agagccacca taggatgttc cttgcctttg
    16081 acaatcaagg ttttgatggt ttgattactg gcaataccaa ggaagctggc tacttcatca
    16141 attgtttttt gatttggagt atcgaccaat gtgattgttt cattgcatga ttgattcgct
    16201 ttgagtggtt ttaagctggt cgcttgttca atatttgcag catagtcgct ggcgtcgcta
    16261 taaaaaatca gatcttcacc cgattcagcc aaaacctgaa actcatggga cgctgaaccg
    16321 ccaatggctc ccgtatcagc ttcaactgct cgatatttga gtcccattct atcaaaaatc
    16381 ctgcaatagg cttgatacat atccttatag gtttcttgca ggctttcaag actgaggtgg
    16441 aaggagtaag catctttcat aataaactca cgggctcgca ttaccccaaa ccgtggtctg
    16501 atttcatcgc gaaacttggt ttgtatttga taaaaattga ctggcaattg tttatatgat
    16561 tgcaattcat tacgcatgat atcggtaatg acttcttcat gggtaggccc aaagcagtac
    16621 tctctttgat tactgtcttt catagttaat aactgaccac caaaggtttc ccaacgtccc
    16681 gtctcttgcc ataattcagc aggttgtacc gatggcataa gcagttccat ggcatgaatt
    16741 ttgttcattt cttcccgaac tatattttca actttacgaa gcactctaag gccaagtggc
    16801 atccaggtat aaagtcctga gccaagctta cgaatcattc ctgatcttag cattaattga
    16861 tgggatgcta tttctgcatc gttgggagtt tctttttgag tgaccaaaaa ccattgagat
    16921 gcgcgcatgt ctattcctgg atttctataa ataatcaagg tcggtattat atacttatca
    16981 cccttcaatt tgcgatatgt ttagtttagg tccttcgttt ctctgttctt ctcaaaagac
    17041 tatatttgct cacattgtcc tataattatt aataaattgg tattttaaat tggtaaaaat
    17101 tatgccaaat ctacctggat tatattttct tcaagcctat ccacgcgaag aaatatggag
    17161 attatttgtt gatggacgct tctggtcaaa agaaaatgga tggagaggct atgagtcgcg
    17221 agagccagga tgccttaacg ccgctctgga gagtttatgt tctattgcat tgcaagttga
    17281 gaaatcagga gaggaatttg aattaagcgt tgatttaata aagaggatac acaagaagtg
    17341 tggaaaaaag gtggaggaat tacaggaaaa aaatccaggt gaactcagaa cagatgaacc
    17401 tgtttcattt ggcattccag ctggccgggc ctcgattaag ggtattgaag aattcctgag
    17461 cctggtattt cttacagaag gcgaagctga atttggccca ggcaaagcag gtccatttgg
    17521 cccacgcttt gataagaatt attttaaaaa tctgaatcca gaacaaatac cggatcttgc
    17581 caagcaaatc tatttcgata tgtgcaaata tgggcatagt aataccaatc acttttatct
    17641 tgcagtaatg aaaaatgtgg atgtttacct ggaaaaaatt acccaatctt acaaccagga
    17701 aataaaaacc gctgaaactc ttgatgaaaa acttaaaatt atcgttaagc atattcgaat
    17761 gtacgaagta ttgcaccctt ttcgagatgc caatggccgt acctttgtca ataatttatt
    17821 aaatattctt ttaatgcaac aaggtttacc gccagcgaca ttttacgaac ctaatgtctt
    17881 tgatttatat agcgctgagg aattagttgt tgttgtgaag gaggcaattt ttaatacggt
    17941 agaaattatt gaacaaagta aaagaaagac tcccattact ttatatggat atcattcaag
    18001 cttggaagag caaaccaaat ttcgggacat gctggatagc ccagcgtatg aaaaaatcaa
    18061 acatatggat ttttcagatt taaaccctga gaaaatgcat cggaagactc aaaaatgttt
    18121 atcatcatta aatgagcaat atccattaca cagaggcgca atctatctta gtgatcccgg
    18181 tgagataaaa ttattattgt caaatcacaa tgaatcccag attaatcagc agatagagca
    18241 aggagcaccg cctatttatg tcggtaaaac tccagctcat ttggctgtca tatcaggaaa
    18301 tatggcaatg cttgatgagc ttatcgcaaa aaaagcagat ttatctcttc aggattatga
    18361 tggaaaaacc gctcttcact atgctgcaga gtgtggaaat atgcaaatta tggggaaaat
    18421 actaaaagtt gtgctaagcc aggaagatgc catcaaagtg ctgaatatca aggataatca
    18481 tggcaaaaca gcattccatt atgctgctga gtttggaacc ccggaattaa tatcagcctt
    18541 gacaaccaca gaggttattc agattaatga accggataac agcggttctt cagcaatcac
    18601 tttggcatat aaaaatcata aattgaaaat tttcgatgaa ctattaaatt ccggtgctga
    18661 tatcagtgat gagcttttgg aagcgatatg ggctcggaag gataaagaaa cattaggtaa
    18721 agtaattacc aaaaatgaga aaattctttt gaataaagaa gccttcagga tagctatttc
    18781 tttaggaagt gtcagtctgg ttaaaaaatt tttacgcgcc ggggtcgata ttgatatacc
    18841 cttaaccaaa gataaagcaa caccgctaat gttatctata aattccggta atcccaaatt
    18901 ggtcagttat ttattgaaaa agggagctaa tacacgttta accgatacca gtggtaattc
    18961 tgtcctgcat tatgtttttt attcaaaggc agaaaacagg gaagctttag caaatattat
    19021 aactgagaaa gataagaaat taattaatca gccaaatact aatggaaatc cacctcttta
    19081 taatgctgtg gtagttaatg atttgaaaat ggcaacaatt ttattagaaa tgggggcaag
    19141 ggtcgatttc gaagacaggc tgggaaataa tattttgcat agtgccatga gaagatgtga
    19201 tttgccgatt atattggata ttgtcaagaa agatagcacc ttacttcata atagaaactc
    19261 tgaaagaaga aatccttttc atcaggcatt gcatgagatg catacgtttc catcctcaaa
    19321 agaaaccgaa gaaatacact tcatgaattt aagtgattta cttttaaaag aaggagtcga
    19381 tttaaataaa aaagat
//
LOCUS       DACVWI010000044        18603 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.044, whole genome shotgun sequence.
ACCESSION   DACVWI010000044 DACVWI010000000
VERSION     DACVWI010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 18603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18603
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.044"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..354
                     /locus_tag="JBH85_05795"
     CDS             <1..354
                     /locus_tag="JBH85_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2802 domain-containing protein"
                     /protein_id="HAU0945711.1"
                     /translation="GNYLLNQRKNINKLQNKIDSLEKLATQVVKDHPMLINADLLFAK
                     QLNEINQQLISIETQLQELENIRHNDGSYQHALRILEMGGTREEIISSCHLSNAEAEL
                     LMNLQAYRTALKHQN"
     gene            414..1521
                     /gene="prfB"
                     /locus_tag="JBH85_05800"
     CDS             join(414..488,490..1521)
                     /gene="prfB"
                     /locus_tag="JBH85_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_031433237.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HAU0945712.1"
                     /translation="MLEVNQINLSLIDLNERIESLRGYLDFEGKSERLEEVIRELESS
                     NVWDNPEQAQALGRERTQLETIVHSLSQLSQSISDQRELFELAREEDDEQTINDIGEE
                     LKSIEQQVASLEFRRMFSGKMDHSNAYLDIQAGSGGTEAQDWAEMLLRMYLRWGEHHG
                     FTTELIECSPGEVAGIKSATIHFTGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFA
                     AVFVSPEIDDDIEIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHIPSGIVVQCQN
                     DRSQHKNKDQAMKQLRAKLYELEMQKKNAEQQALEASKSDIGWGSQIRSYVLDQSRIK
                     DLRTGVETSNTQAVLDGSLDQFIEASLKAGVGQA"
     gene            1518..3008
                     /gene="lysS"
                     /locus_tag="JBH85_05805"
     CDS             1518..3008
                     /gene="lysS"
                     /locus_tag="JBH85_05805"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HAU0945713.1"
                     /translation="MSEEHVHLDESEVYHIRKQKLAELRTGGFNFPNTFRREHLADAL
                     LKQYSETEKQTLEQKHVKVSVAGRIVLRRIMGKASFFHIQDVSGRIQVYLRSNDLPDI
                     YEQFKHWDLGDIVGVQGELFKTNTGELTINAEHVELLTKSLRPLPDKFHGLADQELKY
                     RKRYVDLIANEDSRKTFLIRSHLIKAFREFMDDNHFLEVETPMMHPIPGGALARPFVT
                     HHNTLDMTMYLRIAPELYLKRLVVGGFERVYEINRNFRNEGISTRHNPEFTMLEFYQA
                     YADYNDLMNFTEQLFHYLCDKVLATRQIEYQGQVIDFNKPFERLSVKEAILKYHPDIK
                     AQQLETVEGCRTLLNDLGLPYKETDGLGKLQIILFEETVEHQLFQPTFITEYPTEISP
                     LARRSDTNPEVTDRFEFFIAGREIANGFSELNDAEDQAERFRKQVEEKDAGDLEAMHF
                     DSDYIEALEYGLPPTAGEGIGIDRLVMLFTNSQSIRDVILFPHLRQ"
     gene            complement(3095..3580)
                     /locus_tag="JBH85_05810"
     CDS             complement(3095..3580)
                     /locus_tag="JBH85_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1776 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945714.1"
                     /translation="MQSKIHKKEDNTNYSFLLKCMAAATAALATAAIVTAVVIKATAT
                     AAVGFGVATTGAALSPLLFVGGALLAAVGICCLPLLLCCGSSRSVYTVSNSPAYRPWS
                     SAWYTGGYNPTFHSHPVYNNGGTYHTHHSGTVHTHSNPVHTHGNNVHVHTTPSNVHGH
                     R"
     gene            complement(3895..5040)
                     /locus_tag="JBH85_05815"
     CDS             complement(3895..5040)
                     /locus_tag="JBH85_05815"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HAU0945715.1"
                     /translation="MIQTARLANNQEKFMNYNDTQEIIVTPLMGATGLETLEMGAARI
                     HVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVALWKDPYGLT
                     EDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQY
                     IIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQRLLRDLIA
                     FYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIKIEN
                     PHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRLNQI
                     GLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWDDE"
     gene            complement(5012..7840)
                     /locus_tag="JBH85_05820"
     CDS             complement(5012..7840)
                     /locus_tag="JBH85_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HAU0945716.1"
                     /translation="MSEILEPVKDIPLTNQLELTANVPGMLKTIKRNGKVVIYDDTKI
                     KIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLPSGGAIHIEEIQDQVEL
                     ALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLLITMPNGEVQPLDMDRVN
                     TIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARALVEKEPNYTYVSA
                     RLLLDSLRSEALTKLNIKSEATFDEMAQIYPVYFKSYIEQGIAQGMLDPKMADFDLDK
                     LSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGLALREQHKEEK
                     AIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIKDNALLSKY
                     AGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAVCAYLEC
                     WHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVPDLHD
                     QYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCNLR
                     SPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA
                     VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSS
                     MELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQK
                     LDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTV
                     VNPYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEA
                     ASRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTVT
                     DGALNAVKLIDTEPKACSITDPDCEACQ"
     gene            complement(8112..9062)
                     /locus_tag="JBH85_05825"
     CDS             complement(8112..9062)
                     /locus_tag="JBH85_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin"
                     /protein_id="HAU0945717.1"
                     /translation="MKLKEIRTIIYNYGEEEILKHILYESTEPILIKIPDFTSQFSLD
                     YFEQLTQAKTTYCTFENKRCVDFQAGNFAEVIQQIKSNKPIRIFGQILSRERSKEIEK
                     HVPLWQKIPFRPRYFRETKKVAYFFGGKGAVSEMHFDREHCCNLHLCLSGKKQVLLFT
                     RKQSDNLYKLPFIGDSLIDFTQPLDALIQQYPRLNQAEGYQVLLEKGDMLFMPRNCWH
                     YTEYLDASSAATYVFYPKKFFQYYGYFTGNFFLGYKEESGFKIYRWPFFEKFSRYYAL
                     STGVSKIVFKIIEKILFLFMLPIISLFNIISHKFNPRRVF"
     gene            complement(9311..10087)
                     /locus_tag="JBH85_05830"
     CDS             complement(9311..10087)
                     /locus_tag="JBH85_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HAU0945718.1"
                     /translation="MSSQTNVYPANKLNLWLLLVLALAIVIPMTSYAGSDWQELTPGI
                     EYQDLEGGLLNPWSHIHVFRIDLNKNQMALVTAKNLAQKNASVDQFAEHSKALLSING
                     GFFDHEFNPLGLRINNKKQENPLKRISWWGIFYVKDNKPRITNIRNFHYDSNIDFAIQ
                     SGPRLLIRGNIPSLKAGVADRTALGITDDGKVIILVTTNAAMSTRQLAQIMRAPPLSC
                     SDAINLDGGSSSQLYAKIDSFQLNVHGFSNVSDAIIVKKI"
     gene            10076..11491
                     /gene="pmbA"
                     /locus_tag="JBH85_05835"
     CDS             10076..11491
                     /gene="pmbA"
                     /locus_tag="JBH85_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HAU0945719.1"
                     /translation="MRRHVIVSLCTSFNTTESHMQIKPQNNNSEVYKSTTDLNRVIKD
                     VLELAKKEGATDAAVAVNYDRGFSVDVRMGEVETVAFSEDKGVGLTVYIGQRKGGASS
                     TDTSPEALQSLVKAACEIAKVSAEDPCFGLADKELMTKNHPDLDLYHSWDITPQHAID
                     LALKCESHALSLDKRITNSDGVNVSSYESHHGYANTHGGEGFIHSTRHSVSCSVIAKE
                     GDEMQRDYDYTTARNAENLVSADLIAAKAVERALSRLGSKQIKTQMTPVIFSSRVSSG
                     LLGSFVSAISGSNLYRKNSFLLDSIGQQLFPEFVHIYEQPHLKGALGSAPFDGEGVPT
                     RPNVLVEKGRLLQYVLGSYSARKMGLRTTANSDGVHNLTIDPTCGDLGDLLKMMRKGL
                     LVTELMGQGVNGITGDYSRGASGYWVEDGVIQYPVDQITIAGNLKEMYRMILAVGSDI
                     NPNISMRCGSILIENMMVAGK"
     gene            complement(11658..11879)
                     /gene="infA"
                     /locus_tag="JBH85_05840"
     CDS             complement(11658..11879)
                     /gene="infA"
                     /locus_tag="JBH85_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HAU0945720.1"
                     /translation="MAKEDHIEMAGTVIDTLPNTMFRVELENGHIVTAHISGRMRKNY
                     IRILTGDKVKVELTPYDLSKGRIIFRDKG"
     gene            complement(12010..12381)
                     /locus_tag="JBH85_05845"
     CDS             complement(12010..12381)
                     /locus_tag="JBH85_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HAU0945721.1"
                     /translation="MKQHSQGFLKLVTEAKKRINEISPQILKSKIDNNEKLIIIDVRE
                     TDEWETGKIPNAIHLSKGIIERDIEKIITDNQSNIVVYCSGGYRCALVADSLQKMGYT
                     NVLSLDTGLQGWLEAGYSLVK"
     gene            complement(12436..13104)
                     /locus_tag="JBH85_05850"
     CDS             complement(12436..13104)
                     /locus_tag="JBH85_05850"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HAU0945722.1"
                     /translation="MAYDSNYTFPDPETSDKQGLLAIGGVLTPKRVLQAYSQGIFPWY
                     EPGNPVLWWSPNPRLILIPNEFKISRSLKKTLKKPFKLTVDTAFQRVISYCATCSDRS
                     NKTWITSEMIETYTQLHEMGYAHSFEIWDGSELVGGLYGISLGHAFFGESMFHTITDA
                     SKVALHFLCRIMQSWNFDFIDCQLPTLHLMSLGAKIISRKEFLHMLQETLKYPDKKGN
                     WSID"
     gene            complement(13107..14156)
                     /gene="trxB"
                     /locus_tag="JBH85_05855"
     CDS             complement(13107..14156)
                     /gene="trxB"
                     /locus_tag="JBH85_05855"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HAU0945723.1"
                     /translation="MFSRMLFCHRYFNVFIFVIIFAILTQKIRKAETMSISNHHRLII
                     LGSGPAGYTAAVYAARANLNPVLITGMQPGGQLTTTTDVDNWPGDIEGLQGPALMERM
                     QKHAERFDTQVIFDHIVKADLAQAPFTLQGDSTTYTCDALIIATGASARYLGLPSETA
                     YQGRGVSACATCDGFFYRNKSVCVIGGGNTAVEEALYLSNLASSVTLIHRRDSLRAEK
                     ILQDKLFEKAHSGNIKIIWNSTLDEVLGDGKKVTGAMIRNLKTGETDQLAMDGIFIAI
                     GHTPNTAIFQDQLAMRDGYILIKSGLDGMATSTSVPGVFACGDVADHVYRQAITSAGF
                     GCMAALDAEKYLDSI"
     gene            14130..16514
                     /locus_tag="JBH85_05860"
     CDS             14130..16514
                     /locus_tag="JBH85_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HAU0945724.1"
                     /translation="MAKQHSGKQAGIPKKSMPSFIIKRLCEGSFILILTGALFVLLSL
                     FTYSTNDPGWSHASRSGMSVSNSGGQVGAYIADALYFAFGYFAFLLPVAFVYIAWAIL
                     KDFRSFKALDRMVLLLRTVGFILMVSGGCGLLSINHRFEAVDTIHSSGGIIGQTVGNG
                     WYQMLNMEGATLLLLAMFLVGTTWLTGLSWIKAIELIGCYTLNLFTFLDKFIRKGMQI
                     ISENFNKEKLKTPLIKTEQLPKPDNEKKKSVPKLFQDKKDKEQEKATPVLIASEEKPE
                     IVKPTNEFKEIRPPKTITPGALPSLSLLDKGQPGKPMGGYTHEELESLSRDVEQHLLD
                     FGIQADVVAVHPGPVVTRFELQLAAGVKVSKLTALAKDLARSLSVISVRVVEVIPGKT
                     VVGLELPNHSRQVVRLSDVLSADVYQQAHSPLSLALGVDIGGHPMVVDLAKMPHLLVA
                     GTTGSGKSVGINAMILSILFKASPEQVRLIMVDPKMLELSVYDGIPHLLTPVVTDMKE
                     AASALRWCVEEMERRYRLMAALGVRNLAGYNTKITEAAANGQPLLNPLWKPVDSMDET
                     APELQALPYVVVVIDELADMMMVVGKKVEQLIARIAQKARAAGIHMILATQRPSVDVL
                     TGLIKSNIPTRISFQVSSKIDSRTILDQQGAEQLLGHGDMLYLAPGSGAPLRVHGAFV
                     DDKEVHRIADDWRSRGEPDYVDDILKMGNENGDGAFDDDSGGQSVEDDDPLYDQAVEF
                     VIQTRKASISAVQRRLKIGYNRAARMIEEMERTGIVGPLDGGYRDVLVTSVTED"
     gene            16511..17125
                     /gene="lolA"
                     /locus_tag="JBH85_05865"
     CDS             16511..17125
                     /gene="lolA"
                     /locus_tag="JBH85_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HAU0945725.1"
                     /translation="MNMNKLFLILLLIFSHEVFSQTSAEVLQSKLNAIQTMTANFSQI
                     VKAKNREVSRSSGSMALQRPGRFRWQTKDPLEQLIVADGQKMWIYDVDLEQVTVKNQE
                     KGLGGTAALFLSGYDETLTHDFDVSEKQKGKLTVFDLKSKSAKENFQRIKLIFSQSTL
                     IGLELYDQLGQITDVKLVQIKSNPKLPAKLFQFKPPKGVDVVKQ"
     gene            17141..18445
                     /locus_tag="JBH85_05870"
     CDS             17141..18445
                     /locus_tag="JBH85_05870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HAU0945726.1"
                     /translation="MSLFNKEPDPPLAESLRPQHIDEVIGQSHLLGEGKPLRLCFMGS
                     KLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAVFSGVKDIRAAVEKAQEYLIHDK
                     QTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNSALLSRAQVYVLKP
                     LSEQELKLLFLRAHQRALSSLQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKT
                     AVVDVELLHNVIVQNSRRFDKGGEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVD
                     PYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGELALAQAVIYLSVAAK
                     SNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGE
                     CYLPEGMPEVNWYNPVQRGLETKIAEKLAFLRQLDKDVKKKI"
BASE COUNT         5591 a         3360 c         3916 g         5736 t
ORIGIN      
        1 ggtaattatt tattaaatca acgaaaaaac atcaataaat tacagaacaa aatagattct
       61 ttggaaaaat tggctactca agtagtaaaa gatcatccta tgctgatcaa tgcggattta
      121 ttatttgcga aacaacttaa tgaaattaat cagcaattaa ttagtattga gactcaattg
      181 caagaattgg aaaacataag acataacgat ggcagttatc aacatgcctt gagaatcctg
      241 gaaatgggtg gcactcgtga ggaaattatc agtagttgtc atttatcaaa tgctgaagca
      301 gagttactaa tgaatcttca ggcgtataga accgcattaa aacatcagaa ttagtataga
      361 tagaatctta ctttcgctgt aaaatctcct atttattttt aaaagagaca ctgatgctag
      421 aagtgaatca aattaattta agtttaatcg atcttaatga gcgcatagaa tcgcttaggg
      481 ggtatctttg acttcgaagg taaaagtgag cgcttggaag aagtaattcg cgaattggaa
      541 tcatccaatg tgtgggacaa tccggaacag gctcaggcat tgggacgtga aagaactcag
      601 ctggaaacta tagtccactc attaagccaa ttaagccaat caattagtga tcagagggaa
      661 ctgtttgaat tggctcgaga agaagatgat gagcaaacca tcaacgacat tggtgaggaa
      721 ttaaaatcaa ttgagcaaca agtcgccagt ttggaattta gaagaatgtt ttctggcaaa
      781 atggaccact ccaatgctta tcttgatatt caagcaggtt ctggcggcac tgaagcgcaa
      841 gattgggctg aaatgttatt acgaatgtat ttacgttggg gagaacatca cggatttacc
      901 accgagttga tagaatgctc tcctggtgaa gtggcaggaa ttaaaagtgc gactattcat
      961 tttacaggtg aatatgcgtt tggttggtta aggactgaaa caggtgtcca tcgtttagtg
     1021 agaaagtcgc catttgactc tggcaacagg agacacactt cgtttgcagc tgttttcgtc
     1081 tctcctgaaa ttgacgatga tatcgaaatt gaaattaatc cagctgattt gcggattgat
     1141 acttacagag cttccggggc tggtgggcag catgttaacc gtactgattc tgccgtaaga
     1201 attacacata tccctagtgg gatagtcgtt cagtgccaga atgatcgaag ccagcataaa
     1261 aataaagacc aggcaatgaa gcaattgagg gcaaagcttt atgagttgga aatgcaaaag
     1321 aaaaatgcgg aacagcaagc attggaagct agcaaatctg acattggttg gggatcacaa
     1381 attcgttctt acgtattaga ccaatctcgt ataaaagatt tgcgcaccgg tgttgaaacc
     1441 agtaatactc aggcagtatt ggatggttca ttagatcaat ttattgaagc cagtttaaag
     1501 gcaggagtag ggcaagcatg agtgaagaac atgtacattt agatgaaagt gaagtttatc
     1561 atattcgcaa gcaaaaatta gcggaattgc gcacaggtgg gtttaatttt ccaaacactt
     1621 ttcgccgcga acatttagcc gatgctttgc tgaagcaata ctctgaaact gagaaacaaa
     1681 cattagaaca aaagcatgtg aaagtatctg ttgcaggccg aatcgttctg agaagaatta
     1741 tgggtaaagc cagttttttt catattcagg atgtatcagg tcggatacaa gtttatcttc
     1801 gttcaaatga tcttcctgac atttatgaac agtttaaaca ttgggattta ggagatattg
     1861 ttggtgtaca gggtgagttg tttaaaacaa acactggtga actgaccatt aatgcagaac
     1921 atgttgagtt gttaaccaaa tctttaaggc cacttcctga taaattccat ggtttggctg
     1981 atcaggaatt gaaatatcga aaacgttatg ttgacttgat tgcaaatgaa gacagtcgaa
     2041 aaacttttct aatacggtca catttaatca aagccttcag agaatttatg gatgataatc
     2101 attttctgga agtagaaaca ccaatgatgc atccaattcc tggaggtgct ttggctcgcc
     2161 ctttcgtaac tcatcacaat acattggata tgaccatgta tttgaggata gcccccgaat
     2221 tgtacttaaa acgcttggtt gttggtggtt ttgagagagt atatgaaatt aatagaaatt
     2281 tccgtaacga aggaatttct actcgtcata atccagagtt cacgatgctg gaattttacc
     2341 aggcttatgc cgattacaat gatttgatga attttactga acaattgttt cattatctat
     2401 gcgataaagt attagctact cggcaaatag aatatcaagg ccaggtcatt gatttcaata
     2461 aaccttttga acggttgagc gtaaaagaag ctatattaaa atatcatcct gatattaagg
     2521 cgcagcagtt agaaacggta gagggatgca gaacacttct gaatgattta ggtctgcctt
     2581 ataaagaaac tgatggcctg ggtaaactac aaattattct ttttgaggag acagtagagc
     2641 accaattatt tcagcccact tttattacgg aataccctac agaaatatct cctttagcga
     2701 gacgttctga taccaatccg gaagtcaccg atcgatttga gttttttatt gctggtcgtg
     2761 agattgcgaa tggattttct gaattaaacg atgcggagga tcaagctgag cgctttcgaa
     2821 agcaagttga agaaaaggat gcgggtgatt tagaagcaat gcattttgat agtgattata
     2881 ttgaagcatt ggaatatggc ttgccgccta cagctggtga agggattgga atcgatcgct
     2941 tggtgatgtt atttactaat tcgcaatcaa tcagagacgt tattctattt ccgcatttga
     3001 gacagtaaag tacagcgatt tttagatagc aatggtttgt ttagaaccat tgctatgtca
     3061 agcaatacat aaaatacact tggtttagat aaaattatct atgtccatga acattacttg
     3121 gagtagtatg gacgtgaaca ttattaccat gtgtatgtac tggattagag tgggtatgta
     3181 cggttcctga gtgatgagtg tggtaagtac cgccattgtt ataaacagga tgtgaatgaa
     3241 aagttggatt atagcctcct gtataccatg cactgctcca aggcctgtag gctggtgagt
     3301 ttgacacggt atatacacta cggctgctgc cacagcagag caataatgga aggcagcaga
     3361 tacccacagc ggccagtaat gctcctccta caaataataa tggcgataga gcggctcctg
     3421 ttgttgcaac accaaaacct actgccgctg tcgcagtggc tttgattacc acagcggtta
     3481 ctattgctgc tgtagcaagt gccgctgtag cagcagccat acattttaat agaaagctgt
     3541 aatttgtatt gtcttctttt ttgtgtattt tagactgcat aacttacctc atcttgattt
     3601 tcagttaata gaatgcattt ttctgggtgt gttatatctt ttagcgatgt tgttattatt
     3661 ttgctggcat agcattattt ctatgcgctt gggattttac ctgatcaaac taaaatgtca
     3721 ccataaattt ggatttagag gttgatttgt ttaaaattaa ttcaaaaata atggaaatac
     3781 gtagaatatt attaagtttg gttaagttaa agacaggggt atgacatttt tcacaaagta
     3841 agggatttct ctaaatgaac tcccttactt tgctagaggt aacatcatta aactttattc
     3901 atcatcccag cttaaagtac caccagcctg atattcaata acacgagttt caaaaaagtt
     3961 tttctctttt ttgagatcca gcatttcact catccaggga aatgggtttt cagcacctgg
     4021 gtattgatcc ggcagaccta tttgatttaa gcgacggttt gcaataaagt gcaaatattc
     4081 ttcaaacatc tcggcgttca ttccgagaat gccatgaggc atagtgtctc tggcgtattg
     4141 gtattcgagc tcaacacctt ctctgatgag ttggatcatt tcattcttaa attcaggtgt
     4201 ccataagtga ggattttcga ttttgatttg attaatcaca tcaataccga aattcatatg
     4261 catggactca tcgcgcagta tatattggaa ctgttctgat gttcctacca ttttgttacg
     4321 acgtcccata gagagaattt gagtaaatcc gacataaaag aaaataccct caaacacgac
     4381 ataaaatgca attaaatcgc gtagcaggcg ttgatcattt tctggagtgc ctgtatggaa
     4441 ggtttcatca cctaaacttt gagtaaatgg taatgcccaa actgctttcc tggatacaga
     4501 aggtatttct ctatacatat taaatacttc agcttcatcc agccccaaac tctctataat
     4561 gtattgataa gcatgagtgt gtaacgcttc ttcaaaagct tgccttagaa gatattgtcg
     4621 acactcagga ttagtaatat gtctgtaaac agcaagaacc agattattcg caacgagtga
     4681 atcggcggtt gagaaaaatc ccaaattacg cttaatgatt aaacgctcat cttctgtaag
     4741 accataagga tctttccata aagcgacatc ggcactcata ctgatttcat tgggcatcca
     4801 atgattggca caggctgtca agtatttatc ccaagcccat ttgtatttga aaggcaccaa
     4861 ttgatttaag tcagcacggc aattaatgat ttgcttatca tcaacatgaa tgcgtgcagc
     4921 ccccatttct aaagtttcga gccctgtcgc gcccataaga ggagttacga taatttcttg
     4981 agtatcattg tagttcataa atttctcctg attattggca agcctcgcag tctggatcag
     5041 taatagaaca agcctttggt tcggtatcta ttaatttgac tgcgttaagt gccccgtcgg
     5101 taacagtgga tttttcagca ttacttgcac ctaaactacg taagtagtaa gtggttttta
     5161 atccacgaat ccatgcatgc atataaagct gatccagttt tttaccagaa ggttgcgcca
     5221 tatagatgtt caaggactgg gcttgatcta tccatttttg acggcgtgac gcggcttcaa
     5281 ccaaccacat ggggtcaatt tcaaaagaag tggcataacg tcttttcagc tcatctggaa
     5341 ttcgactgat aggttgtaca ctgccattaa aatattttag atcattgacc atgacctcat
     5401 cccaaagatt cagagctttt aaatcggcta ccaaataagg attcaccacg gtaaattcgc
     5461 cggacaagtt ggatttgacg taaaggttct gataagttgg ttcaatagat tgtgatacac
     5521 cgcagatgtt ggatattgtg gctgtaggtg caatagccat tacatttgag ttacgcatgc
     5581 cttgtgttcg aactttaact cgtaatggtt cccaatccag tttttgtgac ctgtcttgct
     5641 ccagatattt attacgggat tgttgcaaga ggttaattga atcgataggt aatatgcctt
     5701 tgctccatag agacccctca taggttgagt aactgccccg ctctttagcc aggtcacaag
     5761 aggcttcgat agcatagtaa ctgattagtt ccatggaaga gtcagcaaat tcaatggctt
     5821 ctttggatgc ataatccatt tttaattcgt atagcgcatc ctgaaagccc atgataccta
     5881 gaccaattgg ccgatgttgc aagttggagt tacgagcttg aggtacagaa taataattaa
     5941 tatcaatgac attatccaac atacggacag ctgttgatat tgtgcgcttg agtttttgct
     6001 catccagttt accgttttta atatgcgctg gaagattgat actgcctaaa ttgcacacag
     6061 caatttcttc ttcagaagta tttagagtga tctctgtaca taaattagaa ctgtgtatta
     6121 ctccagcatg ttgttgaggt gatcgtaaat tgcagggatc tttgaatgtt agccatggat
     6181 gaccagtttc aaaaagcatg gaaagcattc tacgccatag tttgacagct gaaatggttt
     6241 ttgtattcct aataatacct tgtcgagctt tttcttcata ttcaacatag agagcctcaa
     6301 atgctttacc atattgatca tgtaaatcgg gtacttcatc aggtgaaaat aaagtccaat
     6361 taccatcttc acgaacacgc ttcataaaca aatcaggtac ccaaagggca gtattcatgt
     6421 cgtgagtacg gcggcgatca tcaccggtat tttttcttaa ctccagaaat tcctctacat
     6481 ctctgtgcca gcattccagg tacgcgcaga cagctccctt gcgtttcccc ccctgattta
     6541 ctgctacagc agtagcatcg gcaacattca ggaaaggaac tacgccttga gatttaccat
     6601 tagtcccttt gatatgggca cccatagctc gtactggagt ccagtcattg cctagtcctc
     6661 cagcatattt agagaggagg gcattgtctt ttatagcgct ataaatacca tccaaatgat
     6721 cgggtactgt tgttaaatag caactggata actgcggcct tactgttccg gaattaaata
     6781 aggttggagt ggaagacata taatcaaacg aagaaagcaa ctgataaaac tctatggctt
     6841 tctcttcctt atgttgttca cgaagagcaa gacccatggc tactcgcatg aaaaaagctt
     6901 gaggaagctc atatcttacc ccgcgctcat gaataaaata acgatcatat aaagtttgta
     6961 aacttaaata ggtgaacttc atatctcgtt cgggaagaag agcttggcta agcttgtcca
     7021 ggtcgaagtc agccatcttg gggtcaagca taccttgggc aataccttgc tctatgtaag
     7081 atttgaaata aactggatag atttgagcca tttcatcaaa tgtagcttct gatttgatat
     7141 tgagtttagt cagtgcttca gaacgtaagc tgtctagcaa caaacgcgcg ctgacataag
     7201 tataattagg ttctttttca accaacgcac gcgctgacat aatcaaagct ttatggacgt
     7261 cttcatattt ggcttggtta taaagattgc gcaaagcatc tttaataaca ggttctgctt
     7321 tgacgttgct gaggtcacga catgattctt tgacgatagt attgaccctg tccatatcta
     7381 atggttgtac ttctccatta ggcatagtta ttaataaatg cttactgtct tttgtttgtt
     7441 tttgtttcga ttctgattca cgtgcttttc tgcgttcttc tctatataaa acataggagc
     7501 gagctacttt ataatgtccg ctgcgcataa gggcgagttc aacttgatcc tggatctctt
     7561 caatatgaat agccccacca ctaggtaaac gacgtttaaa tacctgggtg atttgtctgg
     7621 ttagctcttc aatttgctgg tgaattcgat cagaagttgg ggctgtacca ccttcgtcgg
     7681 caataaaggc tttggtaata gcaattttga ttttagtatc atcataaatg actaccttgc
     7741 catttcgttt tattgtttta agcatgcctg ggacattagc agtcaattcc agttgatttg
     7801 ttagcggtat atcctttacc ggctcaagaa tttcggacat ttttcctcca cgaaatatat
     7861 tttagcaatt cattgtttca gtgaatccaa catgttttac gaacttgttt aaaaggcgat
     7921 cctagtttca ttgaaactat gatttgctcc tgtttttacg acagtcaaga gaagcttttg
     7981 tttactgtta ccataattat agcaaaaaac ccaatatata gggtgtttta ggggttttaa
     8041 taacaagata atgtgttttt ttgctttggt caatagaata atctgggatt attctgtgga
     8101 taagttgtgg gttaaaatac tctgcggggg ttaaatttat gagaaataat gttaaatagg
     8161 ctaattatag gcagcatgaa tagaaataaa attttttcta ttattttaaa cacgattttg
     8221 gagactcctg ttgataatgc atagtaacgg ctgaatttct caaaaaaagg ccatctataa
     8281 attttaaaac cggattcttc tttataccct aaaaaaaaat tgccggtaaa atatccataa
     8341 tattggaaaa attttttagg ataaaaaaca taagtagcgg cagatgacgc atcaagatac
     8401 tctgtgtaat gccaacaatt tctaggcatg aataacatat cgcctttctc aagtagaacc
     8461 tgatatcctt cagcctgatt cagtctgggg tattgttgaa ttaaagcatc caggggttga
     8521 gtgaagtcaa ttaaagaatc tccgataaag gggagtttgt aaaggttgtc actttgtttt
     8581 ctggtaaaca gcaatacttg ttttttccca ctcaaacata aatggagatt gcagcaatgt
     8641 tctcggtcaa aatgcatttc tgagacagcg cctttacctc caaagaaata agccactttt
     8701 ttggtctctc taaaatacct tggtctgaaa ggaatttttt gccaaagtgg cacatgcttt
     8761 tctatttcct tagagcgttc tctagacaaa atttgcccaa aaatacgaat gggtttgttg
     8821 ctttttattt gttggatgac ctcagcaaaa ttgcccgctt ggaaatcaac acatcgcttg
     8881 ttttcaaagg tacaataagt agttttggcc tgagtgagtt gttcaaaata atcgagtgaa
     8941 aattggctgg taaaatcagg tattttaatt aagataggct ctgtggattc atacaagata
     9001 tgcttaagga tttcttcctc gccatagttg tagatgattg ttctgatttc ttttaatttc
     9061 attaaattac ctgttgaatg gagtaattta taaatatttt tatctcaata atctatatta
     9121 tatcattaaa aaaatcatgg cttgattgtg atttatgcat acgaatgata tagcagattc
     9181 gggattacgg atctcgcaaa aacgaaggtg gaatttgaaa agggggttct gcaggtggtt
     9241 ggagcgcgtg aatttaattc tataaggagt ttgaacccaa ccgattataa ggggcttgcc
     9301 ttgaatgata ctaaattttc ttaactatga tcgcatcact gacattagaa aaaccatgaa
     9361 cattgagttg gaagctatca atcttggcat ataattggct ggaacttcca ccatccaaat
     9421 tgattgcgtc actacaggat aatggaggtg ctctcataat ttgagctaat tgtctggttg
     9481 acatggcagc atttgttgta actaatataa tcactttgcc atcgtccgtg atccctaacg
     9541 ctgttctgtc tgcaaccccg gctttaagag aagggatgtt tcctctgatt aataatctgg
     9601 ggccgctttg aatagcaaaa tcaatgttac tgtcataatg aaaattgcgt atattagtaa
     9661 tacgaggctt attatcctta acataaaaaa tgccccacca gctaatgcgc tttagtggat
     9721 tttcctgttt tttgttgtta atcctaagtc ccagaggatt aaattcatga tcaaaaaacc
     9781 cgccatttat gctaagtaaa gctttgctgt gttcggcaaa ctgatcaacg gatgcatttt
     9841 tttgagcaag gtttttggct gtcaccagtg ccatctgatt tttattaaga tcgatacgaa
     9901 atacatgaat atgagaccaa gggtttaaca agcctccttc gagatcctga tattcaatac
     9961 ctggagtcag ttcttgccaa tcactgccag cgtaggaagt catagggatg acaatggcga
    10021 gtgctaaaac aagcaagagc cataaattca atttgtttgc aggataaaca ttggtttgcg
    10081 aagacatgtt attgtatcct tatgtacatc attcaacacc acggaatctc atatgcaaat
    10141 taaaccgcaa aataacaata gtgaagtata taagtcaaca acagatttaa atcgagtaat
    10201 aaaagatgtt ttagaacttg ccaaaaaaga aggtgccact gatgcagcag tagcagtaaa
    10261 ttatgatcga ggtttttcag tcgatgtgag aatgggggaa gtggagacag tcgcttttag
    10321 cgaagataaa ggagttggtt taaccgtata cataggtcag cgcaaagggg gagcaagcag
    10381 tacagatacc tctcctgaag cattacaatc tttggttaaa gcagcctgtg agatagcgaa
    10441 ggttagtgcc gaagatcctt gctttggatt agctgataag gaattgatga caaagaatca
    10501 tccagatctt gatttgtatc attcctggga cattacccca caacacgcta tagatttggc
    10561 tttaaaatgc gaatcacatg ccttgtcttt agataaacgg attactaatt cagatggtgt
    10621 taatgtttct tcctatgaat ctcatcacgg ttatgccaat acccatggtg gagaggggtt
    10681 tattcatagt actcgacata gcgtaagttg ctcggtaatc gccaaagaag gtgatgaaat
    10741 gcaaagagac tacgattata cgactgccag aaatgcagaa aatttagtct cagctgattt
    10801 gatagcagct aaagctgttg aaagggcatt aagtcgtctg ggatcaaaac aaattaaaac
    10861 acaaatgact ccggttattt tttcttcaag agtttccagt ggattattgg gtagctttgt
    10921 gagcgctatt agtggttcaa atttatatag aaaaaattcc tttttgcttg attccattgg
    10981 acaacaattg tttccggagt ttgttcatat ttacgaacag ccacatttaa aaggtgcttt
    11041 ggggagcgcc ccttttgatg gggaaggtgt gcctacgcga cccaatgtat tagttgagaa
    11101 ggggcgcttg cttcaatatg ttcttggcag ttattcggcg cgaaaaatgg gtttaaggac
    11161 aacagcaaat agtgatggcg ttcataattt aaccattgat cctacttgcg gggatcttgg
    11221 tgaccttttg aaaatgatgc ggaaagggtt gctggttaca gaactaatgg gtcagggtgt
    11281 gaatggtatt accggagatt attcacgtgg ggcaagtgga tactgggttg aggatggggt
    11341 catacaatat ccggttgatc agattactat cgcaggaaat cttaaagaaa tgtaccggat
    11401 gatattggca gtaggcagtg acattaatcc gaatatttcc atgcgctgtg gctctatttt
    11461 aatagaaaat atgatggttg cagggaaata aaatgcccca aaccatcgag gttaaccact
    11521 tgctctgtaa tcttgatgat agttctctgg aacattttta gcgatatacc tggctgcttg
    11581 cagccagctt tttctatatt ccggcagatt ttctttaatg aaacagagaa cagctataga
    11641 aattggatga aacgcattta gcctttatcg cgaaaaatga tacgaccttt tgaaagatcg
    11701 taaggagtca gctctacctt aaccttatcc ccagtcagaa ttctgatata atttttcctc
    11761 atccgacctg aaatgtgagc cgtaacaata tgtccatttt ccaactcaac gcgaaacatg
    11821 gtgttgggta gcgtatctat aacagtacca gccatttcaa tgtgatcttc ttttgccata
    11881 tgtctctcaa atgatgtatc aaatttttaa aagtgaaata gtgcactaaa ttgcggaaaa
    11941 tggcaatcca gtcttgcaat tacattgttc aaagatatag ctcaaggctc attattggga
    12001 gatattcaat tattttacca agctgtatcc cgcctctagc catccttgca atccagtatc
    12061 cagagacaat acattggtat atcccatttt ttgtagacta tcggctacca aagcacagcg
    12121 ataacctccg ctgcaataaa ctacaatatt gctttgattg tctgtgataa ttttttcaat
    12181 gtcacgctca ataatccctt tacttaaatg aattgcgttc gggattttac ctgtttccca
    12241 ttcatctgtt tcacgaacat ctattatgat taatttttca ttgttatcga ttttactttt
    12301 taaaatttga ggacttatct catttatacg tttttttgct tctgttacca gttttaaaaa
    12361 accttgtgaa tgttgcttca tgcttattct cactctattt agttttataa agataaaagg
    12421 ttatcgataa aaaatttaat caatagacca atttcccttt ttgtcagggt attttaaagt
    12481 ttcttgtaac atatgaagaa attcttttcg acttattatt tttgcgccaa ggctcattaa
    12541 atgcaaggtt ggcaactggc aatcaataaa atcaaaattc catgattgca taatgcgaca
    12601 taaaaaatgc aaggcgactt tggaggcatc tgttattgta tggaacatcg attcaccaaa
    12661 aaaagcgtgt ccaaggctga ttccatagag tccgcctaca agttcggaac catcccagat
    12721 ttcaaaggaa tgcgcatatc ccatctcatg taattgggtg tatgtttcta tcatttcact
    12781 agtgatccag gtcttattag acctgtctga acaagttgca cagtatgaaa tgactcgttg
    12841 aaaagcagta tcgacagtca gtttaaaagg ttttttcaga gtttttttta aacttctgga
    12901 tattttaaat tcgttaggta ttaagatcag gcgcggatta ggtgaccacc aaagaacagg
    12961 gttaccgggc tcataccaag ggaaaattcc ttgggagtag gcttgcaaaa ctcgcttggg
    13021 ggtcaaaaca cccccaattg ctaataaacc ctgtttatca ctggtttccg ggtcaggaaa
    13081 agtatagttg ctatcgtaag ccaattttat attgaatcca ggtacttttc agcatccagg
    13141 gctgccatgc acccaaatcc tgctgatgta atggcttgac gataaacatg atcagcaacg
    13201 tcgccacaag caaatactcc aggaacagaa gtgcttgttg ccattccatc aagtcctgac
    13261 ttaatcaaga tataaccgtc tctcatagcc agctgatctt gaaatattgc agtatttggt
    13321 gtgtgtccaa tggctataaa aataccatcc attgccagtt gatcagtttc accagtttta
    13381 aggttacgaa tcatggctcc tgtgactttt ttcccatcgc ccagtacttc atcaagggtt
    13441 gagttccata ttattttaat gttaccggaa tgcgctttct caaagagttt atcctgcagt
    13501 atcttttctg cacgcaagct gtctcgtctg tgaatcagag taacggaaga tgccaaattt
    13561 gataaataaa gtgcttcttc aacggcagta ttgcctcctc caataacgca aacactttta
    13621 ttgcgataaa aaaatccatc gcaagtagca cacgctgaga cacctcgccc ctggtaggcc
    13681 gtttctgagg gtaatcccaa ataacgagca gaggctccgg ttgcaataat caaggcatcg
    13741 caggtgtaag tagtactatc cccttgtagt gtaaagggag cttgcgctaa atcagctttg
    13801 acaatatgat cgaatatgac ttgagtatca aagcgttccg cgtgtttttg catacgctcc
    13861 attagggcgg ggccttgtaa tccttcaata tctccgggcc agttgtctac atcagtcgtg
    13921 gttgttaatt gtccgccagg ctgcattccg gtgatcaaaa cgggattcag attggctctt
    13981 gcggcataga ctgcagcagt gtaacctgca ggacctgaac cgagtatgat taagcgatgg
    14041 tgattgctta tgctcattgt ctctgccttc cttatttttt gtgttaagat ggcaaatatt
    14101 atgacaaaaa taaaaacatt aaaataccta tggcaaaaca acattcggga aaacaggctg
    14161 gaatccctaa aaaatccatg ccgagcttta taataaaacg cttgtgtgag gggagtttta
    14221 tattgatttt gacaggagct ctttttgttc tcttgtcttt atttacctat tcaaccaatg
    14281 atccaggttg gtctcatgcc tcccgttcag gtatgtccgt ttcaaactca gggggacaag
    14341 ttggtgcgta tattgccgat gcgctttatt ttgcatttgg atattttgct ttcttattac
    14401 cagtagcatt tgtttacatt gcctgggcca ttttgaagga ttttcgctct tttaaagcgt
    14461 tggacagaat ggttctgtta ctgagaacgg ttggttttat cctcatggtt tctggtggtt
    14521 gtggtttatt gagtataaat catcgctttg aagcagtaga taccattcac agttcaggag
    14581 gtattatcgg acaaacagtt ggaaatggtt ggtaccaaat gcttaacatg gaaggcgcca
    14641 ctttactttt attagcaatg tttcttgtgg gaacaacctg gctgactgga ttatcctgga
    14701 taaaggcaat tgagttaatc ggatgttaca cattaaatct tttcacattt cttgataaat
    14761 tcatcagaaa aggaatgcaa attatttctg aaaattttaa caaagagaaa ttaaaaacac
    14821 cattgatcaa gaccgaacaa ctccctaaac ctgataatga aaaaaagaaa tctgttccta
    14881 aattattcca ggacaagaaa gataaagagc aagaaaaagc aacacctgtt ttaattgcaa
    14941 gtgaagaaaa acctgaaatt gtcaaaccta ccaatgaatt caaggaaatt cgtcctccta
    15001 aaacaataac ccctggagct cttcccagtc tgtcgttgtt agataaaggc caaccaggga
    15061 agccgatggg aggttataca catgaggaat tggaaagtct ttcaagagat gtagaacaac
    15121 acttgcttga ttttggtatt caggcagatg ttgtagccgt tcacccgggg ccagtggtaa
    15181 cccgatttga attgcaattg gcagcagggg tcaaagtgag caaactgacc gctttggcaa
    15241 aggatttggc tcgttcgtta tcagttattt ctgtccgagt tgtagaggtt attcctggta
    15301 aaactgttgt gggccttgaa ttacccaatc attcacgcca agtggtcagg ttatcagatg
    15361 ttttatctgc tgacgtatat cagcaagctc attctccctt atctttagcc ttgggagttg
    15421 atattggcgg gcaccctatg gtggttgatt tggcaaaaat gcctcatcta ctggttgcag
    15481 gaacaactgg ttctggtaaa tcagttggta ttaatgccat gattttaagt attcttttta
    15541 aagcaagtcc agagcaagtg cgtttaatta tggtcgatcc caaaatgttg gaattatcag
    15601 tttatgatgg gattccacat ttgctgactc ctgttgttac cgacatgaag gaggcagcga
    15661 gcgcactgcg ctggtgtgta gaggaaatgg agaggcgtta taggttaatg gctgcgttgg
    15721 gtgttaggaa tttggcaggg tataacacca aaattacgga agcggcagct aatggtcagc
    15781 cattgttaaa tccattatgg aaacccgtcg attctatgga tgaaactgca ccagaattgc
    15841 aagcactgcc ttatgtagtt gttgtaattg atgaacttgc tgacatgatg atggttgttg
    15901 gcaagaaagt ggagcaattg attgctcgta ttgcgcaaaa agcaagagca gcaggaatcc
    15961 atatgattct tgcgacacaa agaccttcag tggatgtatt aacaggttta attaaatcca
    16021 atattccaac aagaatatca tttcaggtgt cttcaaaaat tgattcgcgc accatacttg
    16081 accaacaagg agccgaacaa ttgctcggcc atggtgatat gttatatctg gcaccaggaa
    16141 gtggagctcc tttgcgtgtg catggtgctt ttgtcgatga taaggaagtt catcgtatcg
    16201 ctgatgactg gcggtcaaga ggtgaacctg attatgttga tgacatcctt aaaatgggaa
    16261 atgaaaatgg ggatggtgct ttcgatgatg atagtggggg gcaatccgta gaagacgatg
    16321 atcctcttta tgatcaggcg gtagaatttg taattcagac acgcaaggct agtatttctg
    16381 cggtacagag aagattaaaa atcggttata atcgcgctgc cagaatgata gaggaaatgg
    16441 agaggacagg aatagtcggt ccattggatg gtggttatcg tgacgtatta gtaacatcag
    16501 tgactgagga ctgaatatga ataaattgtt tctcattttg ttgctcattt tttcgcatga
    16561 agtgtttagt caaacttctg ccgaagtact gcagagtaaa ttaaatgcta tacaaaccat
    16621 gactgcaaat tttagtcaaa ttgtaaaggc aaagaatcgt gaagtgtcac gatcttcagg
    16681 ttccatggca ttgcaacgtc ctggacgatt tcgctggcaa acaaaagatc cattggaaca
    16741 attaattgtt gctgacggcc aaaaaatgtg gatttatgat gtggaccttg aacaagtcac
    16801 agtcaaaaat caggaaaagg gactaggtgg tactgctgca ttgtttttga gcggctatga
    16861 tgaaactctt actcatgatt tcgatgtcag tgaaaaacaa aaagggaaat tgaccgtttt
    16921 tgatttgaaa tccaaatctg caaaagaaaa ttttcaaaga attaagttaa tttttagtca
    16981 aagtactttg attggtctgg agttatatga tcagctaggc caaattactg atgttaaatt
    17041 agtgcagatt aagtcaaatc ctaagttacc tgccaaattg ttccaattca agccccctaa
    17101 aggtgtggat gtggtaaaac aataatttta atgttgattt atgagcctat tcaataaaga
    17161 acctgatcca ccattggctg aaagtttaag gcctcagcat atcgatgagg tcataggtca
    17221 aagtcatttg cttggagagg gtaaacctct aagactttgt tttatgggct ccaaattgca
    17281 ttctatgatc ttatgggggc cacctggggt cggtaagact actatagcaa gattaactgc
    17341 acaggctttt gattgtgaat ggatagcatt atcagctgta ttttcaggag ttaaggatat
    17401 tcgagctgcg gttgagaaag cgcaggaata tttaattcat gataagcaga ctatcttatt
    17461 tattgatgaa attcatagat tcaataaagc tcagcaagat gccttattgc cttatacaga
    17521 atcaggctta attactttca ttggggcaac tacagaaaat ccgtcttttg aggttaattc
    17581 agcgttatta tcacgggcac aagtttatgt tttaaaaccg ttatcggagc aggagttaaa
    17641 actcttattt cttagggctc accaaagagc tttatcttct ctgcaattta ccgaggaagc
    17701 cgttgatttt ttaatttctt gtgctgatgg ggatgccagg agattactca atttacttga
    17761 gcaaacaaaa acagcctgcc taacaattaa aacagcagtt gttgatgtag aacttttgca
    17821 taatgtgata gtacaaaata gtcgacgttt tgataaaggt ggagaagcgt tttacgatca
    17881 gatttctgct ttacataaat cggtacgagg ctctaatcct gatgcggcat tatattggct
    17941 atgtcgaatg ctggatggtg gtgtggatcc atattattta gccagacgta ttattagaat
    18001 gtcatgggaa gacattgggt tagcagatcc gaaagcgatt caaatcgcta atgatgctgc
    18061 tgcaacttat gagaggcttg gctcacccga gggcgagctt gctttggcgc aagctgtaat
    18121 ttatttgtct gttgctgcca agagcaatgc gggatatgtc gcatttaatc aagctatgga
    18181 atttataaaa agagacaagt ccagagaagt acccattcac ttgagaaacg ctcctactca
    18241 attaatgaaa aaactaggtt atggacatga atatcgatat gctcatgatg aaccacacgg
    18301 ctatgcggct ggtgaatgtt atttacctga aggaatgcca gaagtaaatt ggtataatcc
    18361 ggtacaaaga ggtttagaaa ctaaaattgc agaaaagctc gcttttctgc gccaattaga
    18421 taaagatgta aaaaagaaaa tttgatttgt tctctgttta agccaggtta ggtttgtcac
    18481 ccaatttatc ccaaagaaga aatccaatcg acattggtat ccggtgaagt ataaagagta
    18541 tgtcaaaatt ctgactgtag gaagcaagga tgattctttg aaatctcctt aacccaagtt
    18601 aca
//
LOCUS       DACVWI010000045        18389 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.045, whole genome shotgun sequence.
ACCESSION   DACVWI010000045 DACVWI010000000
VERSION     DACVWI010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 18389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18389
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.045"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(64..390)
                     /gene="trxA"
                     /locus_tag="JBH85_05875"
     CDS             complement(64..390)
                     /gene="trxA"
                     /locus_tag="JBH85_05875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HAU0945727.1"
                     /translation="MSDHIKTVTDASFEQDVINSSKPVLVDFWAEWCGPCRALTPILE
                     EVAATHSKDMTFAKINIDENPQAPAKFGVMSIPTLILFKNGQVEAVKMGLLSKSQLSA
                     FVESNL"
     gene            complement(603..1337)
                     /locus_tag="JBH85_05880"
     CDS             complement(603..1337)
                     /locus_tag="JBH85_05880"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HAU0945728.1"
                     /translation="MAVRTIRIYQPGEYQPGQLLELSPEAGQHVGVVLRMEQGEQLTL
                     FNGDNKEFTASIERVKKKQVFVRIASVLEVNRESPLKIHLAQAISKGERMEMVMQKSA
                     ELGVACITPLITERCQVKIDKEKMAKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQ
                     FVREAKEHLKLILHPAFSKTWRDYPVQPPDVALIIGPEGGFSDEEIRLTSGHGFLPLS
                     LGPRVLRTETAAITALSVLQAAGGDL"
     gene            1501..2895
                     /gene="fumC"
                     /locus_tag="JBH85_05885"
     CDS             1501..2895
                     /gene="fumC"
                     /locus_tag="JBH85_05885"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HAU0945729.1"
                     /translation="MAKTRVETDSMGEIEVPSDKYWGAQTERSLHHFNIGKDIMPREV
                     THAFGILKKAAALTNLELGKLPKDKADLIVQAAEEVSKGLLDEHFPLHVWQTGSGTQS
                     NMNANEVISNRAIELAGGTLGSKSPIHPNDHVNMSQSSNDTFPTAMHIAAAIAFNEKL
                     LPAVRNLRHVFAAKMDAFKNIIKIGRTHLQDAVPLTLGQEFSGYVAQLDACVHRLEEV
                     LPELYELAAGGTAVGTGLNTHPQFAVKVAEHIAKITKLPFVTAPNKFAALASHEPLVH
                     AHGAMKTLACALMKIANDIRWLASGPRCGIGELIIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDTAVGIADSQGNFELNVFKPVIIFNVLHSLNLLADSCHSFQEFCAEGIE
                     PNQPVIDYYLHHSLMLVTALNQHIGYDKAAKIAKTAHHDNISLQEAAVKLGILTAEQF
                     AEFVKPEKMISPEQ"
     gene            complement(2987..3610)
                     /locus_tag="JBH85_05890"
     CDS             complement(2987..3610)
                     /locus_tag="JBH85_05890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945730.1"
                     /translation="MTALIYSKLFYSICICYFILNRIKATSLRNALVFIVIICTCSNL
                     SYGNTNSITEILYSILGMPSIVSFIYCILLLLHQFRYVDWLLSGKTKFYIFFITIIFY
                     CSYLNILSPNVFYMGQLTTLLLCLAISLIAALINLYLAYLYLMSITIGVIFLAQSYNL
                     FVLVFDPLVFFLLLAQPRHIVKASILKDACKQNEIDLHIKNQTHLVE"
     gene            complement(3607..4779)
                     /locus_tag="JBH85_05895"
     CDS             complement(3607..4779)
                     /locus_tag="JBH85_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945731.1"
                     /translation="MKMNIFQMLMSSKNHLVYLGWLIIVFFIGLLTSKAPKNCAFELS
                     QPIKIENNTNANPVYIREKLPMPKGIKKAHSATLTKVDDSHLLAMYFAGSREGGPDVK
                     IYSSIYDIHRNKWSTPKIVLTREKLRKNSHQLIRKLGNPVIYNQNGKLHLFVVATAFA
                     GWAASKIYHFESLDKGKSFNYKATLYLSPFFNLSTLIRASPLPLVDGGFFLPAYHELE
                     SKYPLMLRFDKKGSYTESIQINHIGGQLQPSIIPLSSLNCLAGFRNANKTDHWMRIQY
                     CQEGGLSWLDPQKTNIKNMNNSINLFNFNSEVFLVHNRTHKNNIKGQLVLSRMENSTG
                     IFSYLFTLDTGEINNKSVTYPSTLVDRGYVDIIYDKNANEVIHIRFNKYYLDSLKK"
     gene            complement(4818..5654)
                     /locus_tag="JBH85_05900"
     CDS             complement(4818..5654)
                     /locus_tag="JBH85_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HAU0945732.1"
                     /translation="MTNHYLSKLRVTFAGLLFYWILPLRKQIVLSNIDLVFKNSATPA
                     EKTRLAKAFYSHVASNLKELIWMGWASSKGLTNKIEIHGLEHLESAVSQNKGVFLLTG
                     HLGNWELAYTLGFSRLMPQYGQFNIIRRPIKIKWLESILFNRMIRYGLTITSSISAPK
                     KINQALRNKELVLFTLDQHAKLENKSGIAVEFFGLHAGTYRSLAFFAHKHQTPVVPVS
                     GYRLHNGKHVIKFHPEIEWEFHVDKEQAIYRNTLRYNQMLEKLILEYPEQWWWVHRRW
                     KL"
     gene            complement(5647..6495)
                     /locus_tag="JBH85_05905"
     CDS             complement(5647..6495)
                     /locus_tag="JBH85_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis acyltransferase"
                     /protein_id="HAU0945733.1"
                     /translation="MFELKRDLNSLPLTWLGRCVYFFSSYKRSNAKKNIDRVFQFSLS
                     PAEKKRLCMAYYSHMLTSIKEIILYSLLSKKTLEKRVKIIGIEHLENALSKGKGVLVL
                     TGHFGNWEFAPLFFLDKFDGRNFDFYCIRKNLRFAFLDSIFLRRFENCGFKIVSHKNA
                     VSQTRRVLKNKAIVFFPFDVCPSSKIKNKIKTDFLGRKTETNLSLAYLASLYDSCVLS
                     ITFYRTNKKQHVVHIYPEIKPVVYPDYKQTLVENTQLYNKRLEEMLLPYPEQWLWSYK
                     RWKNND"
     gene            6717..7787
                     /locus_tag="JBH85_05910"
     CDS             6717..7787
                     /locus_tag="JBH85_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945734.1"
                     /translation="MNKKSILLMSMLLVSPLSMSGTVGEAQQDGKRFVFSASAIYGSL
                     SDGTLDTREYADTIKSSGLISSGLFNVDSRWGYSLSAGYLFGPEFSYDLVLSYTNIKN
                     HGSSITVNSAQGDLMDNRLSLILKDFSGLQMIGPALAAVNSDYDYQTADLITHRTVPS
                     KFAKQLHYTRYYGAKAAEIVKEFTARYSGESRFGFTLPPAIQPLADNINFHAKYKGIG
                     PKAGAGVYWDVNRFITVGGDISFSVLAGNSKSHWNERVEITGAQPILDFPNTGGRYAY
                     FLNHPSSLWVSPVLGANLVVASHFNLNNDSVIGVEGGIGSEQYWSMNEGERYGLSNGG
                     NRINISERFAVRNVFIKASYIV"
     gene            7941..8771
                     /gene="lpxA"
                     /locus_tag="JBH85_05915"
     CDS             7941..8771
                     /gene="lpxA"
                     /locus_tag="JBH85_05915"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HAU0945735.1"
                     /translation="MQMSQLDHVHAVNNLYMLSHQIHPTAIVSANARIGRDVVVGPYS
                     IVEDNVSIGQGTVIGSHVSIKSWTEIGEYNQIETGAIIGAIPQDLKFSGENSTAIIGN
                     NNIIREYVTISRGTSGGGGITRIGNNNVIMTSAHIAHDVQMGNHNIISNAVAVAGHVI
                     IDDWVTIGGLCGIHQFVQLGRMSMIGSQTRITKDVLPFTLVCGNPAKRFGINIERLQR
                     NGYSSVARMQIQRAYKILFHDGHLLTNAIEILKREFIDNNDVAYILKFLENSKRSFYR
                     "
     gene            8781..9818
                     /gene="lpxD"
                     /locus_tag="JBH85_05920"
     CDS             8781..9818
                     /gene="lpxD"
                     /locus_tag="JBH85_05920"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HAU0945736.1"
                     /translation="MCMSNYQFTKPAGPFRLFELAKISGATLYEGKGETFTVSGLAKL
                     SEATSNDLVMLHQKKYVKELKHTAARVCIIGPDYVKYAPDSMYLLVHPNPYKAFALIA
                     QAFYPSEKPPGFIATSAMIESSAIIGVDCFIAHGAYIGNQVKIGNRCKIGVNTYIGDT
                     VTIGDDCLIEDNVSIRHAVIGNNVVIYSGARIGQDGFGFASDANGHYKIPHAGGVIIG
                     NDVEIGANTCIDRGSLDNTVIEDWCRLDNLVQIGHNVKIGKGSVLVAQVGIAGSTELG
                     EHVTLAGQVGVIGHLKIGKGATVLASAKVYKNVKSGDRVGGHPAVSISDWQKQIRFLK
                     TAIKSKKSPKS"
     gene            complement(9790..10947)
                     /locus_tag="JBH85_05925"
     CDS             complement(9790..10947)
                     /locus_tag="JBH85_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lipid-A-disaccharide synthase 2"
                     /protein_id="HAU0945737.1"
                     /translation="MTMKRPTRIAMVAGELSGDLLGAGVIRELKQHLTNVEFMGVGGP
                     QMLKEGFHSLIDISELSVMGISDVLRRYPQLYLIRERLLREWTINPPDVFIGIDYPDF
                     NLSVEARLKKQHIKTIHLVSPKVWAWRQKRVHLIKKAVDLVLTLFPFEEAFYRQHGVS
                     AQFIGHPLADLIEINPSCSTLRKKYNYHSDDTILAVLPGSRVGEIKYMGPLFLEVMQR
                     IAVERPHVHFIVPIACQDLYPVFFKQLHAEYGHLKIQIIQGNAREAMAISDVVLTKSG
                     TATLEAMLLKRPMVVAFKWGILTHAIIAPQVKVPYIALPNLLAGKKLIPEFVQEKANV
                     DSITESVLNLLDSSNQNELIKQFTDIHCTLRQNANEKAALSILRILGTSLT"
     gene            complement(11125..11982)
                     /locus_tag="JBH85_05930"
     CDS             complement(11125..11982)
                     /locus_tag="JBH85_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945738.1"
                     /translation="MFYYRAYQLNIQSDIPLGKIEQTSYCVPDVIIRKTSEIPDIPTN
                     ASRLGNKYASLKNQLWITDNQWSFYIEEGSTILYQIKSVELTTPIHILLTGACFGCLL
                     QQRNLLVLHANTVCYPGQPAFAISGHTGAGKSTAAAFHIKQGALLAADDITAIEFKQD
                     IPHVLPGFPRLKLWNDSREALHLLSLESLYSYNGRSKHHIDLKPNQHCSTPIVLEKLV
                     IIKPDLAEERELFGKDKIQCLLANNYTALIFHLFDFHWDVFKNNLKLVRQLKIYNAPR
                     PAMVFYNEI"
     gene            complement(12012..13814)
                     /locus_tag="JBH85_05935"
     CDS             complement(12012..13814)
                     /locus_tag="JBH85_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0945739.1"
                     /translation="MAEFYKKYAGKYKDFLDFIRFLYEYSPFQLVFSQAMVILSSFLG
                     GIGVVSLVPMLSYSGWLAQNKSGSDLNWLSSLWQQLPMHDGQIPITFVLSVYCLIICS
                     VSMTNYLAELTKIKFMKNFERYCRESLIQNLVNARWEYLLKSKLKDSEYVLNVGLMKI
                     SALTTYTLSLFNNIIKNSVYLIVGLMLSAGLTVISLITVISIAIFFKKSNSAGMGKQE
                     LDLSRSRQINLSNFLEGIKIAKIHELTHEYLKQERDISFKVMDNNIKFLSNQMKIKFG
                     YTAIGAIAFTLIFLISISLLQISIPTLVVLLFVYNQIIRRISTMQQSMSYALNISPLF
                     RNYLILKNDFLSNKESSNVIPFHTRVPLPKDILIKVKQVSFSYGEKAILKNVSFDIHR
                     NKITAIKGPSGVGKSTCVDLILGLLKPDDGSILFNQSVVPMDVEHATSKKKWVSYVPQ
                     NIFLFNDSIRNNITWLNNDVNEEKLWKVLALVDAENLVRSMPNGLNTMIGDRGVHLSG
                     GERQKLAIARAILSSPTLLILDEATSALDPQSEAVIMQSLAALKQTMTVILIAHREST
                     IVYADEIIDFGKFNLKEEYPLNFNVLEDTTVAMN"
     gene            complement(13825..14295)
                     /locus_tag="JBH85_05940"
     CDS             complement(13825..14295)
                     /locus_tag="JBH85_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014327030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide biosynthesis B2 protein"
                     /protein_id="HAU0945740.1"
                     /translation="MTEIKKIRYAHLFLVLLDKGKTRVHVAVLIVYYLIVSRIITWLY
                     PFNRYAKSFGHKHAETLYEDFDHLYWLKCCQKLFPKINRLLPWKSACLQQSVAAFLLL
                     RRKNMPTTIYFGMKREGDEVIGHVWLRCGKHYITGGNGVGYTIFCTYALDRVKN"
     gene            complement(14353..14667)
                     /locus_tag="JBH85_05945"
     CDS             complement(14353..14667)
                     /locus_tag="JBH85_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HAU0945741.1"
                     /translation="MSNHLQQHKYQFEYKTNTILERYDLVFFSSVDEDLILLDEEASH
                     YLVVNSVGYKIWNLLESKKTVSQLVSGLMEIYKVDFDTCFNDIKAFIQQMVQHKLIKV
                     CS"
     gene            complement(14693..16519)
                     /locus_tag="JBH85_05950"
     CDS             complement(14693..16519)
                     /locus_tag="JBH85_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase"
                     /protein_id="HAU0945742.1"
                     /translation="MNALYGVLRFDGQPFDRELLERAKFNSPVWRADHSELYYNDFYA
                     TASTQRFITPECALQTAPYHDKESGVIANGDLYLTNHSSLANWLGVSSKNSDLYLATR
                     AYLKWGEKCVNYLAGNFFLVFYDLRKKRLFIAIDHFNFCCCYYLFVPGKYFIFSNTFN
                     TFKVFHDSLAVNHGAFHKLAAKQKIGQETCLKSVKKLTAARYMIVSDQNLQEQQYWDL
                     RKTQQTGQCQSREDYYSAFRNEIQQSIRQSIRTDAEIMAHYSGGLDSSSIASIAALQL
                     AKENKTLMAYTAIPKYLSGDSHRKGCKYHELDRVQSACRYYDNIETIVYQSSEDLSIF
                     DKLQVFYPYLDQPFKAVFNMEWILAGLEMAAAKNCRILLNGEQGNGSISWKGVTLGNY
                     LNQRVKFTRHLLKYHMKLGKQFIKSGSLNLKKNRTDLNEMKKNFLEPHYSLLRGKNRL
                     ETRSYMRSIYLWFGVEVIDPTSNLDLVQFCYDLPEWVYHGGNKYFEIRRLPKLKRRLL
                     VRDALEGLVPPEIRHNPYRGEQAADWYYQFNKYGHAWGRLLADIAEKHPLIWEIYPKK
                     YLLDLFANHPISPQSRNFQDVNMHLVPALSTAFFINYLNDLY"
     gene            complement(16661..17626)
                     /locus_tag="JBH85_05955"
     CDS             complement(16661..17626)
                     /locus_tag="JBH85_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HAU0945743.1"
                     /translation="MEYGNLIDILNTNETALTSFSAPEILKTAQRMRLTNSVYTILRE
                     HYGIPASQLANFKLVLKENRDRAIRKLFLSIKINELFQQYNIPVIHLKGLPLSQKLFG
                     DPLIRQSCDIDLYISPQHLEQADEVFFENGIIRDKYSFLHDVNKLKKHRVLKDVSYVA
                     EKYGIKIELHWRLFRWKDKFNQPFEFYWNNKVPILVGGKNLFYTLSPIDEYLYVAVHG
                     ANHGFESLHWLYDFARYSTLLSQDDSRRIVELVNNLSIQTEYQMATYCAERIFPSVFT
                     ESGNAGLLPNSLTRKALISLIYHSKSTYRSKRRILRMMANKFYYI"
     gene            complement(17714..17851)
                     /locus_tag="JBH85_05960"
     CDS             complement(17714..17851)
                     /locus_tag="JBH85_05960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013102051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide"
                     /protein_id="HAU0945744.1"
                     /translation="MDKLNWEQPEVCAIPIDSVSASTEEADVQDGSSESGLSSSSSSG
                     G"
     gene            complement(18092..18358)
                     /locus_tag="JBH85_05965"
     CDS             complement(18092..18358)
                     /locus_tag="JBH85_05965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945745.1"
                     /translation="MINYKTIKWRYGLIALFALGVSGCYFDGTSPQERGYSYQENSMP
                     SSGGQTTASNQSQPQQKSYASKDTSQKSTPGPKRTAAPQLPVIQ"
BASE COUNT         5704 a         3630 c         3447 g         5608 t
ORIGIN      
        1 ccataaaaaa gtaaaagccc tgtaaataaa ttttcatctc agggcttttt aactttaata
       61 ccgttacaga ttactttcaa caaaagcact taattgggat ttagacagca aacccatttt
      121 aactgcttca acctgaccat ttttaaaaag aatcaaagtg gggatactca tcacaccaaa
      181 tttagctgga gcttgaggat tttcatcgat attgatttta gcaaacgtca tatctttact
      241 atgagtggct gccacttctt ccagaatagg tgtcaatgca cggcatggtc cacaccactc
      301 agcccaaaaa tcaacaagaa caggcttgga tgaattaatt acatcctgct caaagcttgc
      361 gtcggttact gttttaatat gatcactcat aaataaacct cagttattag aaatataaag
      421 gtctggtcca agaccagatt atgctattcg atctaaaatc tttcctgtgt atcctgtgtg
      481 ttttgtttta gagcaaacac aagattttca aaaagagtag tttacatata atactccaga
      541 aatacttgta atagagctat aaaacaaaag acgcagctta taccgatttg gaaagaagtc
      601 tattatagat cacctccggc agcttgcaaa acacttaacg cagttattgc cgcggtttcc
      661 gtacgcaata ctcgcggccc cagtgacaaa ggcagaaatc catgaccact ggtcaatcta
      721 atttcctcat cactgaaacc accttccggg ccaataatca aggcaacatc aggaggttgg
      781 acaggataat cgcgccatgt cttgctaaat gccggatgca aaatgagctt gagatgttct
      841 ttggcttctc tgacaaattg atccaaataa actggctgtc tcaactctgg aatttgatta
      901 cgcccacatt gctcgcaagc tccaatgata atattaagcc attggtgcat tttttttgcc
      961 attttttctt tgtctatttt aacctggcaa cgctcggtaa tgagaggtgt aatgcatgcc
     1021 actcctaact ctgccgattt ttgcatcacc atttccatcc gctcgccctt ggaaatggct
     1081 tgagccaaat gtatctttaa tggggattcc ctgttcacct caagaacaga ggcaattcta
     1141 acgaatacct gctttttttt gaccctctca atagatgctg taaactcttt gttgtcccca
     1201 ttaaacagtg tcagttgttc accttgctcc atgcgcaaga ctacgccaac atgctgcccc
     1261 gcctcaggcg ataattccag aagttgcccc ggctggtatt cgccaggttg atagatacgt
     1321 attgttctca cagccaatta tccttggttt tagtaaagga tactataaca aaaattacca
     1381 atttacgtct gctatgctag aattttggcg attgatttta ttctttccca actcgctgat
     1441 aaagcagcta gacataaata aacataatca acagattaac tttgctaagg aattgataac
     1501 atggctaaaa cacgtgtaga aacagacagc atgggtgaaa ttgaagtccc gtctgataaa
     1561 tattggggcg cccaaaccga acgttcattg catcacttca atataggcaa agacattatg
     1621 ccacgcgaag taacccatgc ctttggtatc ctgaaaaagg cagccgccct gacgaatctt
     1681 gaattaggca aactgccaaa agacaaagcg gatttgattg ttcaggcagc agaagaagtg
     1741 agcaaaggac tattggatga gcattttccc ttgcatgtct ggcaaacggg aagcggcaca
     1801 caatcgaata tgaacgccaa tgaagtcatt tccaatcggg ccattgagct ggctggcggc
     1861 accctgggaa gcaagtcccc tattcatccc aatgatcacg tcaatatgtc tcaatcatcg
     1921 aatgacacct tcccaacagc catgcatatt gcagcggcga tagcttttaa cgaaaaattg
     1981 ttacctgctg tacgcaattt acgtcatgtt ttcgcagcga aaatggacgc tttcaaaaac
     2041 atcataaaaa ttggcagaac ccatttgcaa gatgcggttc cactgacttt ggggcaagag
     2101 ttttcaggtt atgttgccca actggatgcg tgcgttcacc gtctggaaga agtcttgcct
     2161 gaattatatg agctggctgc cgggggcact gccgttggaa ccggattgaa cacccatccg
     2221 caattcgcag tcaaagttgc tgaacacatc gctaaaataa ccaaactgcc ttttgtgacc
     2281 gctcctaaca aatttgccgc tctggcttct cacgaacctc tggtgcatgc gcacggtgcc
     2341 atgaaaactc tcgcctgcgc attaatgaaa atcgccaatg acatacgctg gctcgcctca
     2401 ggacctcgtt gcgggattgg tgagctgatt attccagaaa atgagccagg ctcatccatc
     2461 atgccaggca aagtcaaccc gacacaatgc gaagccatga ccatggtttg tgcccaggta
     2521 ctgggtaatg atacagccgt tggaattgct gacagccagg gtaattttga attaaacgtg
     2581 tttaaaccgg ttatcatatt taacgtattg cactcattaa acctgctcgc cgacagctgc
     2641 cattccttcc aggagttttg cgcagaagga atagagccta atcagccggt gattgattac
     2701 tatttacacc attccctcat gctggttact gcccttaatc aacacattgg ttatgataaa
     2761 gcggctaaaa tcgccaaaac cgctcatcat gacaatattt cattgcaaga agccgccgtg
     2821 aaactgggaa ttttaaccgc cgagcaattt gctgagtttg tgaaaccgga aaagatgatt
     2881 tcccctgagc aatgaaattg agagggttaa gacataccgg ggttctggta tgtcttaacc
     2941 taagatgtag tagaaaacaa aatgacaaca aacaatagtt tgaattttac tcaaccaaat
     3001 gggtctgatt ttttatatga agatcgattt cgttttgttt acaagcatcc tttaaaatag
     3061 aagcttttac tatgtgtctt ggttgagcta ataacaggaa aaatactaat gggtcaaaaa
     3121 ctaaaacaaa taaattatag gactgggcta aaaaaattac acctatagta atgctcatga
     3181 ggtataaata ggccaaatat aaatttataa gcgctgcaat taaagaaatt gccaaacaga
     3241 gcaatagtgt agtcaattgc cccatataga acacattagg agaaagaatg tttaaataac
     3301 tgcagtaaaa aataatggta atgaaaaaaa tatagaattt agttttccct gaaagtaacc
     3361 aatcaacata acgaaattga tgtaagagta gcaaaataca atagataaaa cttacaatgc
     3421 taggcattcc caaaatgcta tatagtattt cggtaattga gttggtatta ccataactca
     3481 aattagaaca tgtgcatatg ataactataa aaactagagc gtttcttaat gaagttgctt
     3541 ttatcctgtt aaggataaaa tagcatatac agattgaata aaacaatttg ctataaatta
     3601 atgcagtcat tttttcaaac tatccaggta atatttatta aaacgtatat gaatgacctc
     3661 attcgcattt ttgtcataga taatatcaac ataacctcta tccactaatg tagaagggta
     3721 agtaacactt ttattgttaa tttcacccgt atccaaagta aacagatacg aaaatattcc
     3781 ggtcgaattc tccattctgg ataacacaag ttggcctttg atattatttt tatgcgttct
     3841 gttatggact aaaaatacct ctgaattaaa attaaataaa ttaatagaat tattcatatt
     3901 tttaatattc gttttttggg gatcaagcca tgaaagtcct ccttcctggc aatattggat
     3961 ccgcatccag tgatctgttt tattagcatt acgaaatcca gctaagcaat tcaagcttga
     4021 aaggggaatg attgatggct gtaattgccc cccaatgtga ttgatttgaa tgctttctgt
     4081 atagctccct tttttatcaa accggagcat taaaggatat ttgctttcta attcatggta
     4141 tgctggcaaa aaaaaaccac catctactaa tggaaggggg gatgctctga ttaaggtact
     4201 taaattaaaa aagggactta aatacaaggt agctttatag ttgaaactct tccctttatc
     4261 taatgactca aaatgataaa ttttgctagc cgcccaacct gcaaaagcag ttgcaacaac
     4321 aaacaaatgc aacttgccat tttgattata aataacagga ttacctaatt ttctaatcaa
     4381 ttgatggcta ttcttgcgca gtttctctcg agtcagcact attttggggg ttgaccattt
     4441 atttctatgg atatcataaa tagagctata aattttaaca tcaggtcctc cctcacgact
     4501 cccagcaaaa tacatggcga gcaaatgact gtcatcaact ttagtcaatg tagcagaatg
     4561 tgccttttta ataccttttg gcataggtaa tttttctctt atataaacag gattggcatt
     4621 tgtgttattt tctatcttaa taggttgaga taattcaaat gcgcaatttt taggggcctt
     4681 agaagttagc aagccaataa aaaaaactat tattaaccat cctaaataaa ccagatgatt
     4741 ttttgatgac atcaacattt gaaaaatatt cattttcatt ttgtaaaata atatttgggt
     4801 ttctttacat ttttagctta taatttccat cgtctatgaa cccaccacca ttgctccgga
     4861 tattccaaaa ttaatttttc aagcatttga ttatagcgaa gagtatttct gtagatagct
     4921 tgttctttat cgacatgaaa ttcccattct atttctggat gaaatttaat aacgtgcttg
     4981 ccgttgtgta gcctatagcc ggatacgggg actactggtg tttgatgttt atgggcaaaa
     5041 aaggccaaac ttcggtatgt cccagcatga aggccaaaaa actcgacagc gattcctgat
     5101 ttattttcca atttcgcatg ctgatcgagt gtaaaaagta ctaattcctt gtttcttaag
     5161 gcttgattta ttttttttgg cgcactaatg ctgctggtaa ttgttaatcc atagcgtatc
     5221 atcctattaa acaatattga ttccagccat tttattttaa tgggtcgtct gatgatatta
     5281 aattgcccat attgaggcat caggcgagaa aaacctaaag tataagctaa ttcccaatta
     5341 cctaaatgac cagtgagcag aaaaacccct ttattctgac tcacagcgct ttccaaatgc
     5401 tctaaaccat gaatctctat cttattagtc aatcctttag aacttgccca acccatccaa
     5461 atgagttctt ttaaattaga tgcgacatga gagtaaaacg ctttggctaa tcttgttttt
     5521 tcagcaggag tcgctgaatt tttaaaaacg aggtcgatat tactcaatac aatttgctta
     5581 cgaagaggca aaatccagta aaaaagaagc cctgcaaaag tcactcggag tttggacaaa
     5641 tagtggttag tcattatttt tccaacgttt gtatgaccat aaccattgct cagggtaagg
     5701 caataacatc tcttccaatc ttttattata aagctgagtg ttttcgacaa gagtttgttt
     5761 ataatccgga taaacaaccg gttttatttc cggataaata tgtactacat gttgtttttt
     5821 attggtacga taaaaagtga ttgataacac acatgaatca taaagacttg ctaaataggc
     5881 caaactgaga ttagtctccg ttttccgtcc taaaaaatcg gtttttatct tatttttaat
     5941 tttcgaagaa gggcaaacat cgaaagggaa aaagacaatg gccttgtttt tcaaaaccct
     6001 gcgagtctga ctcaccgcat ttttatgact gactatttta aatccgcaat tttcaaatcg
     6061 ccgcaaaaaa atggaatcca aaaaagcaaa acgcaaattt ttgcggatac aataaaaatc
     6121 aaaatttctg ccatcaaatt tatcaagaaa aaataacggt gcaaactccc agttaccaaa
     6181 gtgtcccgtc aatactaaaa ccccttttcc cttgcttaga gcgttctcta aatgctcaat
     6241 accaatgatt ttgacacgct tttccaaagt ttttttactc agcagcgagt ataaaataat
     6301 ttctttgatg cttgttagca tgtgggaata ataggccatg cataaacgtt ttttttcggc
     6361 tggtgatagg gagaattgaa aaacgcgatc gatatttttt tttgcattac ttcttttgta
     6421 agaagagaaa aaatagacgc agcgtcccaa ccaagtcaag ggaagagaat ttaaatcacg
     6481 tttcagctcg aacataaaaa gaaaactacc ctgtgttttg cctaagcact attcctgact
     6541 atgaagcctg gtttagacag gcagtctaca atctaatcat tttaaagtaa acagaactta
     6601 ctgatactga ctaactcctg cgaatacgtt atttgtagct ggatatcatt gaagttgtcc
     6661 tttataatcc agagcgaaca aatacaatat tcaaagatca gggagtagat acatagatga
     6721 ataaaaaaag cattttattg atgagcatgc tcttggtaag tccacttagc atgagtggca
     6781 cagtaggaga ggcgcaacaa gatggtaaga gatttgtttt tagtgcttca gcaatttatg
     6841 gctcgttaag tgacggcacc ttggatacca gggaatatgc tgataccata aagtcttccg
     6901 ggctaattag ctctggcttg tttaatgtgg attcccgttg ggggtattca ttaagtgccg
     6961 gatatctttt tgggcccgaa ttcagctatg atttggtatt aagctacacc aatataaaaa
     7021 atcacggctc cagcataact gtcaactctg cacagggtga tctcatggac aacaggctaa
     7081 gcctgattct taaagatttt tcaggactgc aaatgattgg ccctgccctt gctgcggtaa
     7141 attctgatta tgattatcaa accgcggatt taattactca taggactgtt ccaagcaaat
     7201 ttgccaaaca gctccattat actcgctatt acggggcaaa agccgcagaa atagtaaaag
     7261 aatttaccgc tcgttatagt ggtgaatctc gttttggctt cacccttccc cctgcaatac
     7321 agccccttgc ggacaatatt aattttcatg cgaaatataa agggattggc cctaaagcgg
     7381 gagcaggagt ctattgggat gttaatcgat ttattactgt aggcggggat atttctttct
     7441 ctgtattggc tggtaatagc aaaagtcatt ggaacgaaag ggttgaaata accggggctc
     7501 aaccaatttt ggatttcccc aatacgggcg gccgttacgc ttatttcctt aatcatcctt
     7561 cctcgctatg ggtttctcca gttctaggag ccaatttggt ggtggcctct catttcaatt
     7621 tgaataatga cagtgtaatt ggtgttgagg gcggaatcgg ctctgagcaa tactggtcga
     7681 tgaatgaagg ggaaaggtat ggtctgtcaa atggtggtaa caggataaat attagcgagc
     7741 gttttgcggt acgtaatgta tttataaaag caagttatat tgtttagttc agacataacc
     7801 tgacacgact tgcgatgagc gcaagtcgtg tgactgagtg ctttccctct atatcaaatc
     7861 attttcccag aacagattta agagtagtat agagcacgtt gtaaccagca tttaatttat
     7921 agttgtagtg gaggtgaacc atgcaaatga gtcagttgga tcatgttcat gcggttaaca
     7981 atttatatat gctctcccat caaattcatc ctacagctat cgtatcagcc aacgccagaa
     8041 ttggacgaga tgtggttgta ggtccatatt caattgttga agacaatgtc agcattggac
     8101 aaggaaccgt cattggttct catgtgtcga taaagtcctg gacagaaata ggtgaatata
     8161 atcagattga aacgggagca atcattggag caatcccgca ggatctgaag ttcagcggag
     8221 aaaacagcac cgccataatc ggtaataata acattattcg cgaatacgtt acgatcagta
     8281 gaggaacatc tgggggagga ggaattactc gaataggaaa caacaatgtc ataatgactt
     8341 ccgcccatat agcccatgat gttcagatgg gtaatcataa tatcatctcc aatgcggtag
     8401 ccgtagccgg gcatgtaatc attgacgatt gggtaaccat aggcggttta tgcggcatac
     8461 accaattcgt acaattagga cggatgagta tgattggttc tcaaaccaga attacaaaag
     8521 acgtactgcc tttcacgttg gtttgcggaa acccagccaa gcgttttggt attaacattg
     8581 aaagattgca acgaaatgga tacagttctg tcgcaagaat gcaaattcaa cgagcctaca
     8641 agatactttt tcatgatggt catcttttga caaatgccat tgaaatactc aagcgtgaat
     8701 tcatagacaa taatgatgtg gcttatattc tcaagtttct tgaaaattcc aaacgcagct
     8761 tttatcgcta attttttaga gtgtgtatgt caaattacca atttacaaaa cctgcaggac
     8821 catttcgttt attcgaatta gctaagattt ctggtgctac actgtatgaa ggtaaaggag
     8881 aaacctttac agtttctggt ttggcaaaac tttcagaagc cacaagcaat gatttggtaa
     8941 tgctgcatca aaaaaaatac gtcaaagaat taaagcatac agctgctcgt gtttgtatca
     9001 tcgggccaga ctatgtgaaa tatgcccctg atagcatgta tttactggtg caccccaatc
     9061 cctacaaagc atttgctttg attgctcaag cgttttatcc ttctgaaaaa ccacccggtt
     9121 tcattgccac ttcggcaatg attgagtcga gcgctattat tggcgtggat tgttttattg
     9181 ctcatggggc ttatattggc aatcaggtta aaattggcaa cagatgcaaa attggagtga
     9241 atacttatat tggcgatact gtaaccatag gcgatgattg tcttatagaa gacaacgtca
     9301 gcattaggca tgctgttata gggaataacg tggtcattta ttccggtgct cgtataggcc
     9361 aggatggttt tggctttgcc agtgatgcga atggccatta taaaattccc catgcgggtg
     9421 gtgtcattat tggcaatgat gttgaaatcg gggctaatac ctgcattgac cgaggctctc
     9481 tggataatac ggtgattgaa gattggtgtc gtctggataa tcttgtgcag attgggcata
     9541 atgtcaagat tggtaaaggc tctgtcctag tggctcaagt tggaatcgcc ggcagtacag
     9601 agcttggtga acatgtcact ttggcaggac aagttggcgt gattggacac ttgaagatcg
     9661 gtaaaggcgc cactgtttta gccagcgcta aagtctataa aaatgtgaaa tccggagaca
     9721 gggtcggcgg ccacccagcg gtatcaatta gtgattggca aaaacaaatc cgatttttaa
     9781 aaacagcgat taagtcaaag aagtccccaa aatcctgagg atagataaag ccgctttctc
     9841 attagcattt tgccttaatg tgcagtgaat atcagtaaat tgtttaatta gttcgttttg
     9901 attggatgag tcgagtaaat tcagaactga ttctgtaatg ctatcaacat tcgctttttc
     9961 ctgaacaaat tcagggatta attttttacc agccaataaa ttaggcaacg caatataggg
    10021 aacttttact tgcggcgcga taatcgcatg agtaagtata ccccatttaa aggcaaccac
    10081 catgggtcgt tttaaaagca tcgcctcaag tgttgctgtt ccggattttg ttaaaacaac
    10141 gtcagagata gccatggcct cacgagcatt cccttgaata atctgaattt ttaagtggcc
    10201 atactcggca tggagttgtt taaaaaaaac tggatacaaa tcctgacacg caatcggtac
    10261 tatgaaatgc acatgaggcc tctccacagc aattctttgc attacttcca aaaacaaggg
    10321 ccccatgtat ttgatttcac ctacccgact acccggtaat actgccagaa tggtgtcatc
    10381 agaatggtag ttatattttt tacgcaaagt agaacaactt gggtttattt cgattaaatc
    10441 agctaaagga tgaccaataa attgtgccga taccccatgt tgtcgataaa atgcttcttc
    10501 aaatggaaat agggttaata ctaaatcaac tgcctttttt attaaatgca cccgtttttg
    10561 tcgccatgcc caaactttgg ggctcaccag atgaatggtt ttaatatgct gtttttttaa
    10621 ccgtgcttca acggataaat taaagtcagg gtaatcaatc ccaatgaata catctggtgg
    10681 attaattgtc cattccctca ataacctttc tcttattaaa tacagttgag gatatcgtcg
    10741 cagaacatca ctgattccca tcacagaaag ctcggagata tcaatcaggg aatggaagcc
    10801 ttccttgagc atttgaggac caccgacccc catgaattct acgttggtta aatgctgttt
    10861 cagctcacga attacccctg ctcccagtaa atctccagat agttcgccgg caaccatcgc
    10921 aattcgggtc ggtcttttca tagtcaaatt gcaccaatat aaaatttaaa tgacttgatg
    10981 ttagcctaaa ctaataacca tagccaagca gtattaattc cgcaaacgca cagattgcca
    11041 attgagtgtc agaaaacgct ttacaaataa tttttcagcc tggcaaaaat gtctgcctgg
    11101 gcaagtcctc ttggcaaaga tcatctagat ctcattgtaa aataccatag ccgggcgagg
    11161 ggcattgtat attttaagtt gtctgactaa ttttaaatta ttcttgaata cgtcccaatg
    11221 aaaatcaaat agatgaaata tcagagcagt gtagttattt gcaaggagac attgaatctt
    11281 atctttaccg aagagttctc tttcctctgc caaatcaggt tttataataa ccagtttttc
    11341 aagcactatt ggtgtgctgc aatgttgatt aggctttaaa tcaatatgat gcttggatct
    11401 tccattataa gaatagagtg actccaaaga taataaatgt agggcttctc tactatcgtt
    11461 ccataatttc aaacgaggaa atcccggcaa tacatgaggg atatcctgtt tgaactctat
    11521 ggctgttata tcatctgcgg ccaataaagc gccttgtttt atatgaaatg cagctgccgt
    11581 agattttcct gccccggtat ggccagagat ggcaaaagca ggttgacctg ggtagcaaac
    11641 tgtattggca tgcaaaacaa gcaaatttct ctgctggagc aggcagccaa aacaggcacc
    11701 agtaagaaga atatgaattg gtgtagtcag ctcgacggat ttaatctggt ataaaattgt
    11761 acttccctct tcaatataaa agctccattg gttatcggta atccatagct gattttttaa
    11821 agacgcgtat ttgtttccca agcgactcgc gtttgtaggt atatcaggaa tttcactggt
    11881 tttacgaata atgacatctg gaacacaata agaagtttgc tctatttttc caagtggaat
    11941 gtcactttgt atgttcaatt ggtatgcgcg atagtaaaac ataaacgtct ttataaaaaa
    12001 ttgataaata attaattcat agcaaccgta gtgtcttcaa gaacattgaa atttaacgga
    12061 tactcctctt ttaaattaaa cttgccaaaa tcgattattt catccgcata aactatggta
    12121 ctttcccggt gagctattaa aatgactgtc atggtctgtt ttaaagcagc aagcgactgc
    12181 ataataacag cctcgctttg gggatcaagt gcactggttg cctcatcgag aatgagcagc
    12241 gttggcgatg acagtatggc tctggcaatc gccagctttt gccgctctcc gccagataaa
    12301 tgcactcctc tgtcaccaat catagtattc aatccattgg gcatagacct gaccaggttt
    12361 tcagcatcaa ccagggcaag aactttccat agcttctctt cattcacatc attgtttagc
    12421 cacgtgatgt tattcctgat tgaatcatta aaaagaaaaa tattttgagg aacataacta
    12481 acccattttt tcttggaagt tgcatgttcc acatccattg gaactacgga ctggttaaag
    12541 agaattgagc catcatccgg cttcaacaag cccaatatta aatcgacaca ggtggatttc
    12601 ccaacaccag atgggccttt tattgcagtt attttatttc gatgtatgtc aaatgaaaca
    12661 ttttttaaaa ttgctttttc tccataggag aaggaaactt gctttacttt aattaatata
    12721 tccttaggta atggtactcg cgtatgaaag ggtatcacat ttgatgattc tttatttgat
    12781 aaaaaatcat ttttaaggat taaatagttt cgaaacaagg gagaaatatt caatgcataa
    12841 gacatgcttt gctgcatcgt tgatattctt cttatgattt gattgtaaac aaataataaa
    12901 acaaccaacg ttggaattga aatctgtaac agggaaatgg aaataagaaa aattaaagtg
    12961 aacgcgatcg cgccgattgc agtatatcca aatttaattt tcatctggtt gcttaaaaat
    13021 ttaatgttat tgtccatcac cttgaatgag atatcacgct cttgcttgag atattcatgt
    13081 gtaagctcat gaattttagc tatttttatt ccttcaagaa aatttgacaa attgatttgc
    13141 ctgcttctgc tcagatcaag ttcttgtttt cccataccag cagaatttga ttttttaaaa
    13201 aaaattgcta tcgaaatcac agtaattagc gaaatgactg ttaatcccgc agaaagcatt
    13261 aaaccaacaa tcaaatacac cgagtttttg attatgttat taaataaact caacgtataa
    13321 gtcgttaaag cagagatctt catcaaccca acattcaata catactcaga atctttcagt
    13381 ttacttttta gcaggtattc ccatcgcgca ttcaccaagt tttggattaa gctttcacgg
    13441 cagtatctct caaaattttt cataaatttt atttttgtta attcagcgag ataattggtc
    13501 atggagactg agcatatgat gaggcaataa accgataaga caaaagtgat tggaatttgg
    13561 ccatcgtgca tcggcaattg ttgccataaa ctggataacc aattgagatc agagccggac
    13621 ttattttggg ctagccaacc actatagctt aacattggca ccaatgagac cactccaata
    13681 ccgcccagaa agcttgaaag aattaccatt gcttgtgaaa acacaagctg gaatggcgaa
    13741 tattcatata aaaacctgat gaaatcgaga aagtctttat attttcccgc atatttttta
    13801 taaaattcag ccataaaaca acacttaatt ttttacccgg tctaatgcat aagtacaaaa
    13861 aatagtataa cccacgccgt ttcctccagt gatatagtgt ttaccgcacc gcaaccatac
    13921 gtgccctatg acctcatctc cttctcgctt cataccaaaa taaatcgttg tgggcatatt
    13981 tttgcgacgt aatagcaaaa atgctgcaac actttgctgt aaacaggcac ttttccatgg
    14041 caacaatcta tttattttag gaaacagttt ttggcaacat tttagccaat acaaatggtc
    14101 gaagtcttca tacaaagttt cggcgtgttt atgcccaaac gacttggcat atctgttaaa
    14161 cggatataac caggtaatga ttcttgatac tatcaggtaa taaacaataa gcacagcaac
    14221 atgaactcgt gtttttccct tgtccaataa aaccagaaaa agatgggcat atcttatttt
    14281 ctttatttca gtcaattgta ttatccaatt ctgcttaaaa actatgacag cgaatgatta
    14341 taaattcttt atctatgaac agactttgat taatttatgt tgaaccattt gttgtataaa
    14401 cgctttaata tcattaaagc aggtatcgaa atcaacctta tatatttcca taagcccaga
    14461 aacaagttgg ctcaccgttt tttttgattc cagcaaattc catattttgt aacctacgga
    14521 attaactacc aaataatgac tcgcttcttc atcaagcagg atcaagtcct catcaacgct
    14581 ggaaaaaaac accaagtcat agcgttctaa tattgtattg gttttatatt cgaattgata
    14641 tttgtgttgt tgtaaatggt tactcatcga gattatctcc agtaagtaat aatcaataca
    14701 gatcatttag gtagttgata aaaaatgctg tgcttaaagc tgggaccaaa tgcatattaa
    14761 cgtcttgaaa atttcttgat tgcggactaa tgggatgatt agcaaataaa tccaaaaggt
    14821 attttttagg ataaatttcc caaatgagag ggtgtttctc tgcaatatct gccaaaagcc
    14881 ttccccaggc atgaccatat ttattgaatt gatagtacca atctgctgcc tgttcaccgc
    14941 gatagggatt atggcggatc tcagggggca caagcccttc cagagcatct ctcaccaata
    15001 agcgcctttt taatttaggc aatcgcctga tttcaaaata tttgttacct ccatgataaa
    15061 cccattcagg aagatcatag caaaactgga ccagatccag gttacttgtt gggtcaatca
    15121 cctctacccc aaaccacaaa tagatggaac gcatgtaact tcttgtttcc aacctgttct
    15181 tacctctcag gagagaataa tggggctcta aaaaattttt tttcatctca ttgagatcag
    15241 tacgattttt tttcaggttt agcgagccag attttataaa ttgcttgcct aatttcatat
    15301 ggtattttaa aagatgccgc gtaaatttta cacgctgatt cagatagttg cccaatgtca
    15361 ctcccttcca tgaaatggat ccattcccct gttcaccatt taaaagaatc ctgcagtttt
    15421 tggctgctgc catttccaat cctgccaata tccattccat attgaatacc gctttgaatg
    15481 gctgatctaa ataaggataa aagacttgaa gtttatcaaa aatactcaag tcttcagagc
    15541 tttgataaac tattgtttca atattgtcat agtaacggca tgcgctttgc acccgatcta
    15601 attcatgata tttacatcct ttccgatgac tatcgcccga caaatattta ggaatcgcgg
    15661 tatatgccat aagagtttta ttttctttgg caagttgcaa ggcagcaatc gaagcaatgg
    15721 atgaagagtc taaaccaccg ctgtaatggg ccatgatttc tgcgtcagtc cggatacttt
    15781 gtctgatact ttgctgaatc tcatttctga atgcactata gtagtcttca cgcgattggc
    15841 attgtcctgt ctgttgtgtc ttacggaggt cccagtattg ttgctcttgt aaattttggt
    15901 cgctaacaat catatatctg gcagccgtca gttttttaac cgatttcagg caagtttcct
    15961 gacctatttt ctgttttgcc gcaagcttat ggaaagcgcc atgattcacc gctaaggagt
    16021 catgaaaaac tttgaatgta ttgaatgtat tgctaaatat aaagtattta ccaggcacaa
    16081 acagatagta acagcaacaa aaattaaaat gatcaatggc aataaacagc cgttttttgc
    16141 gtaagtcata aaatacaagg aaaaaattcc ctgctaaata attcacacat ttttcacccc
    16201 attttaaata tgcacgggtt gccaggtata aatccgaatt tttggagcta actcctaacc
    16261 aatttgccaa actggaatga ttagttagat aaagatcgcc gttggcaatt acacccgatt
    16321 ccttatcatg atatggagct gtttgtaagg cgcattcggg agtaataaag cgctgtgtgc
    16381 tcgccgtagc ataaaaatca ttataataaa gttcgctatg atccgctctc caaaccgggc
    16441 tattaaattt ggctcgttct aataactctc gatcaaatgg ttgcccgtca aaacgcagaa
    16501 ctccatacaa agcattcatg ctatatccta agataaaaaa taactactaa tgtttgtgct
    16561 gcttaatttc caaccagcca aaaatgtaac taccgcaaca gcaaaactaa taaattcgtt
    16621 gccggtagta gcaagctcca tttctactct aagcttttca ttaaatgtaa taaaatttgt
    16681 tcgccatcat acgtaatatt cttcttttcg agcgatatgt gctttttgaa tggtaaatta
    16741 aagaaatcag ggcttttctc gttaaagagt tgggtagtaa acctgcatta ccgctttctg
    16801 taaacacact tggaaatatt ctctccgcac aataagtcgc catttgatac tctgtctgta
    16861 tggaaagatt attaaccaat tcaacaattc ttctgctgtc atcctggctg agcaaggtgg
    16921 aataacgggc aaaatcataa agccagtgca aagattcaaa tccatgattc gctccatgta
    16981 cagcgacata cagatactcg tcaatagggg acagggtata aaataaattt tttcccccca
    17041 ccaaaatcgg cactttattg ttccaataaa actcaaaagg ctgattgaat ttatctttcc
    17101 atctaaacaa acgccagtgg agttcgattt taataccata tttttcagcc acgtacgaaa
    17161 catcctttag tactcgatgt ttctttagct tattaacgtc atgtaagaaa ctgtatttat
    17221 cccgaatgat tccattttca aaaaacactt catctgcctg ttccaagtgc tggggagaaa
    17281 tatataaatc gatgtcgcat gactgacgaa tcaaagggtc tccaaacaat ttttgcgaga
    17341 gtggtagtcc tttcaggtga ataaccggaa tattgtattg ctgaaaaagc tcgttgattt
    17401 tgatggacaa aaataatttc ctaatggccc tgtctctatt ttcctttaaa acgagcttaa
    17461 agttagcgag ttgagaagca ggaataccat agtgctccct taaaatggta taaaccgaat
    17521 tggtcaggcg cattctttgt gctgtcttta ggatttcagg tgctgaaaat gaagtcaagg
    17581 cggtttcatt cgtgtttaaa atatcaataa ggttgccata ttccattaat tatcctaaag
    17641 gcttgattgc tggcgaatct aaaaaataga aaaagggtaa tttgtacttt acttataaag
    17701 aacccttttc tttttaacca cctgaactgc tgcttgagga aaggccgctt tcactactgc
    17761 cgtcctgaac gtcagcttcc tcagtgctag cgctaacact gtctattggt atagcacaaa
    17821 cctcaggctg ctcccaattt aacttatcca tcatctactc ctgtatttca gactactaaa
    17881 cggccgccat tctaaaataa tttttcaagg cacgcaaata tcagaaaaaa taacattatg
    17941 gatctaacca aaacaaggag gaatttctct actgccatct ttgataacta tcaaggatca
    18001 tggcatttca tacctatgag aaaatctttt gaacaagttt tagttatccc tcatataagt
    18061 tgattatgag ggataataag taaaactctt tttattgaat taccgggagt tggggtgcag
    18121 cggttcgctt tggcccagga gtagattttt gagaggtatc ctttgacgca tagctttttt
    18181 gttgcggctg ggattgattg ctagcggtgg tttgtcctcc actggatggc atgctatttt
    18241 cctggtaaga ataccctctt tcttgagggc ttgtcccgtc aaaataacat cctgataccc
    18301 ctaaagcaaa gagcgcaatg aggccatatc tccattttat cgttttgtaa tttatcataa
    18361 ttaagcttcc tgcattcgtt aattaaaca
//
LOCUS       DACVWI010000046        18230 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.046, whole genome shotgun sequence.
ACCESSION   DACVWI010000046 DACVWI010000000
VERSION     DACVWI010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 18230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18230
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.046"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            704..979
                     /locus_tag="JBH85_05970"
     CDS             704..979
                     /locus_tag="JBH85_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0945746.1"
                     /translation="MTLKNPSRLHLLNEFESAPHSALFNQQTIAAVLSCSTQLLERNR
                     WAGGGVPYLKIGRKVLYRKSDVLNFLQQQKIYYSTSDEGQLQLVENA"
     gene            1045..2796
                     /locus_tag="JBH85_05975"
     CDS             1045..2796
                     /locus_tag="JBH85_05975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF927 domain-containing protein"
                     /protein_id="HAU0945747.1"
                     /translation="MSQNHVIELANTLKQRPIVCDYTGGRFRLTNEGLTYIGIDRDGT
                     PLPPRWICAPLHIVAKTRDAQSGEWGRLLEWQDDDGITHQWAMPLALLQGDASDVRRE
                     LARLGLSISPHRTARDLLASYLQVFPVDARARCVDKLGWHGDVFVTASQCIGQSTEKI
                     VFQNTNAIEPAMSIKGSVDKWRDSIGRLASGNSRLVFAISVALAPVLAKIVGEDSGGF
                     HFRGASSSGKSTALSLAASVWGNPQSYCRLWRSTTNGLEGLAALHNDGLLILDELSQM
                     DPREAGEAAYLLANGQGKTRASRTGTVRQSSRWSLFFLSAGEESLTALMAKSGQRINA
                     GQEIRLADIEADAGCQMGIFETIHDQLSPASMALSLKKYSSGYHGAIGRAWLNQVVAN
                     RQTISRFITDTIQSFVDIVIQPDATGQIIRVARRFALVAAAGELASQFGLTGWKKGES
                     FHAAKTCFIAWQDAFGVDGHREDRAIMAQVRAFFESHGASRFDNVNSPNNDKILNRAG
                     FYHTDGEGFRIYMVLTETYKNELCKGFDQRTVTRVLLQAGWLKPASDGKASHKPRIKG
                     VGTPRLYVFTGKIWGGE"
     gene            3124..3489
                     /locus_tag="JBH85_05980"
     CDS             3124..3489
                     /locus_tag="JBH85_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraK"
                     /protein_id="HAU0945748.1"
                     /translation="MKKSLTENITTSKQNPQRTNTRKHKVEFLAMREDISEALEKGWS
                     IIVIWETLRDEGSFTATYNTFRLYVLKYLNGQKSGYSQKDINVQQPKRLAVNQDKERK
                     PSAMPSFTFNPIPNLEELL"
     gene            complement(3846..4211)
                     /locus_tag="JBH85_05985"
     CDS             complement(3846..4211)
                     /locus_tag="JBH85_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BRCT domain-containing protein"
                     /protein_id="HAU0945749.1"
                     /translation="MVRFHLPAQKPYHTLDALEFSEKTFHLLGNFRSCKTKKEFGERI
                     ENLGGKIRGEGQTKNLNFKNTDYFVVGDNHYKEGQNGNKISRVDSYNSRHAPQEQIPK
                     ISESHCNELMEKYLQLKPK"
     gene            4450..5625
                     /locus_tag="JBH85_05990"
     CDS             4450..5625
                     /locus_tag="JBH85_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HAU0945750.1"
                     /translation="MPKKDCILNLPGYSIKKVSGENPVYIEVNYRCVVRCIHCGNKKL
                     RVKDSFIRRIRHESIGLRRSYLCLKAHKYYCPSCGRYFNQRFPGIGKYQRASESLRKQ
                     VFHYHSKGVSQKDLARDLKLGKSTVERWYHYGYELRYKKIATRSCPRVLGLDEHSFNR
                     KVGYATTFCDLAKHKIFDVVEGRSEKDLESYLNTLEGKEKVQVVCIDLSSSYRKLIRH
                     YFPNAMIVADRFHVIRLLNQLCLQTYQQIDPEMKYQRGLLAALRTNPNNLTVKRLNRR
                     ERYLQQQPVIAAIYYFKQRLHRLLMRKHRTAKQCTRLIPLFLKLVASLKESPFESLKT
                     LGKTLYQWREEVVRMWRFTKNNGITEGFHRKMKLIQRRAYGFRNFENYRLRVKVLCS"
     gene            complement(5735..5811)
                     /locus_tag="JBH85_05995"
     tRNA            complement(5735..5811)
                     /locus_tag="JBH85_05995"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5775..5777),aa:Ile,seq:cat)
     gene            complement(5901..7772)
                     /gene="rpoD"
                     /locus_tag="JBH85_06000"
     CDS             complement(5901..7772)
                     /gene="rpoD"
                     /locus_tag="JBH85_06000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HAU0945751.1"
                     /translation="MPMTMNDQDQQSSQITKVISLGKEQGYLTYSQINDLLPNIVDTE
                     HFDVIISMLEGMNIKVFELPPSEDELALLLNTEEVPDIEEAAMVLASVDKETGRTTDP
                     VRMYMREMGTVELLTREGEIRIAKRIEEGIYQVLKSLAHYPETVQLVLEDYDRFLAEE
                     IRLNEIISGFADVDEEIAPATNIGSMLDEEQQEEILLDVDEEDEDGEGGISDVDDGPN
                     PEQAKIYFDELREAFEKAMKALKEHGRTNKKTVELLDSMSESFLKLKLTSRQVDKLTR
                     HFRQLRNHIREFERSIMRLCIEKARIPRKLFIDTFPGQETDLGWLETIISKHAKKLDL
                     QRIEENREEILRLQSKLASFEIEYGLTISEIKDINRKMSIGEAKARRAKKEMVEANLR
                     LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
                     ADQARTIRIPVHMIETINKLNRISRQILQETGREATPEELAEKMELSEDKIRKVLKIA
                     KEPISMETPVGDDDDSHLGDFIEDNNIESPIDMATAEGLREATLEILETLTPREAKVL
                     RMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLEGDEG"
     gene            complement(7853..9598)
                     /locus_tag="JBH85_06005"
     CDS             complement(7853..9598)
                     /locus_tag="JBH85_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAU0945752.1"
                     /translation="MSSNMSGLIPQPFIDDLLNRTDLVELIDGYVPLKKRGNSHIACC
                     PFHNEKTPSFNVVAKKQFYHCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVP
                     RDGTGEKHKSSLNLYNLMSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYA
                     PEGWHNLEKAFPNNQRELLSTGMLIKSDEGKIYDRYRNRIMFPIHDRNGRVIGFGGRV
                     LDKDQKPKYLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIF
                     NVVATLGTATSTFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGF
                     IFLPNEHDPDSLVRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAV
                     KPYLQKMVEGSYKQLLIDDLSRLTHIESHRLTNLITDKSESKPEVQAAISRSPLRIAI
                     ALLLQNPEIYSIAIQQINPALLHEQEHHILLKLLQQLKDKPNANTATLIEFWRNSSYF
                     ELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAERLSL
                     QNLLKERHGQAEIEK"
     gene            complement(9595..10038)
                     /locus_tag="JBH85_06010"
     CDS             complement(9595..10038)
                     /locus_tag="JBH85_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2359 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945753.1"
                     /translation="MTIKEQINNDIKDAMRAKDKNLLNALRLISAAVKQIEVDERIEV
                     DDERMLVILDKMSKQRKESIAQFEKASRDDLVAQEQFELNIISKYLPEPLTDNEIEEL
                     ICDAIKSTGAEKMSDMGKVMAILKPKLQGRADMAQVSARIKAKLS"
     gene            complement(10241..10480)
                     /gene="rpsU"
                     /locus_tag="JBH85_06015"
     CDS             complement(10241..10480)
                     /gene="rpsU"
                     /locus_tag="JBH85_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HAU0945754.1"
                     /translation="MPTVRVKEGENPEYALRRFKRSCEKAGILTELRRREFYEKPTAE
                     RKRKQAAAVKRHLKKISRDVSSRRGVGHRRKKSTT"
     gene            10685..11686
                     /gene="tsaD"
                     /locus_tag="JBH85_06020"
     CDS             10685..11686
                     /gene="tsaD"
                     /locus_tag="JBH85_06020"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HAU0945755.1"
                     /translation="MLVLGIESSCDETGVAVYDSESGLLSHALHSQIATHRVHGGVVP
                     ELASRDHVNYLVPLVDEVLTKAQIRKNQLDGIAYTAGPGLIGALLVGSCFAKSLAYAL
                     NIPALAIHHLEAHLLAAKMETPSLDFPFIALLVSGGHCQLIEVNNIGEYRLLGDTLDD
                     AVGEAFDKTAKLMGIPYPGGAVLANLADQCLSTPYQFPRPMTDRPGLDFSFSGLKTHA
                     LNTWNQSEKKESDRSEIAKAFQQAVVETLIIKCKRAIKESQSKRLVVAGGVGANKALR
                     SALQKWIKDIQGEVYFPALEYCTDNGAMVAYAGCLRMMRGEIDGGLGVIVKPRWPLA"
     gene            complement(11860..12693)
                     /gene="plsY"
                     /locus_tag="JBH85_06025"
     CDS             complement(11860..12693)
                     /gene="plsY"
                     /locus_tag="JBH85_06025"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HAU0945756.1"
                     /translation="MALFIFLILVGYLMGSINSAIIVCRTFGLPDPREEGSKNPGATN
                     VLRLGGKQYGIMVMVFDALKGILPVILAKFLSAEPVTVAFTALAAVVGHMYPVFFHFR
                     GGKGVATTIGALLAFHFIIGVMVAATWLLVANFWRYSSLASIASISLAPFYSLILVGN
                     LNIFPPLFMITILVLYKHRDNFNRLIDGKEPKIKFKHSVIEEIMEASPATSAEQEFPG
                     KEVIDTNIDETEKTEQAEAVKKPKVKKATTKAKKTTSKEETTKKPKSTKPKTKTVKEK
                     E"
     gene            13047..14456
                     /locus_tag="JBH85_06030"
     CDS             13047..14456
                     /locus_tag="JBH85_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HAU0945757.1"
                     /translation="MDAIHLLSATEIIRRIKMKELSAAEVMVAHLNHIDKINPVINAL
                     TERIPPEECLKQAKEIDKSISSKKNLNKLMGLPVAIKDALYVKGLICSSACSGFYKGE
                     KAVRDATLVSRLKKEGAIILGLTNVPELCRGGDSDNLIYGRTNNPYDLARTSGGSSGG
                     SAALIAAGGVPFALGSDGGGSLMQPAHCCGIVALKPTHGHLPHTGSVGGDSYGLIGNL
                     ISFGPMARSVSDLRLGLSVLAGSDQYDPYTNPVPVMPAAPLKKLRVAYFTENGFTPVD
                     AEIQNVVKSAALALQDDVAIVREVRPDCVSKAFDLHWELFLGGDRGAGFKTMLSELGV
                     NNLSWELQEFLRQAEQTQFSVTQLHQRMREIDLFRLELALFMQDYDVLISPVFPTVAK
                     PHGIGIKEISDFSYAMTHNLSGFPTISLRCGTSAEGLPINVLIAANRWKDTTSLAVAE
                     RVEQLMGGYKPPSLIHSLQ"
     gene            complement(14488..15615)
                     /gene="hemW"
                     /locus_tag="JBH85_06035"
     CDS             complement(14488..15615)
                     /gene="hemW"
                     /locus_tag="JBH85_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HAU0945758.1"
                     /translation="MLPLSLYIHIPWCIRKCPYCDFNSHKSPDVLPEHQYIQALIEDL
                     KTDISSYNTREINSIFIGGGTPSLFSAEAYNNLFNELKRILPFAKNIEITMEANPGTV
                     EQHRFTDYRQSGINRLSLGIQSFNPNHLKILGRIHDEKQAHSAIDTARKAGFDNLNLD
                     IMHSLPNQSVTQGLQDLKTALSYQPEHLSWYQLTIEPNTVFYKHTPPLPSEEEDYLLE
                     EQGFALLHNSGYHRYEISAFSKPEKQARHNINYWLFGDYLGIGAGAHGKMTTPNAIIR
                     TRKHRQPKDYLDNEKPYLAACETITGKELLFEFMLNTTRLEQSIPLDLFTTTTGLELN
                     QLLPLLKLANKKQLINLTDTHWQVTPLGRQYTNDLQALFLP"
     gene            15694..16257
                     /gene="nudE"
                     /locus_tag="JBH85_06040"
     CDS             15694..16257
                     /gene="nudE"
                     /locus_tag="JBH85_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HAU0945759.1"
                     /translation="MMRNKPKCKQRTVIAKSRLFTVEEMYLEFSNGAQRVYERIKSHG
                     HGAVLIVALTPGESLLLVREYAAGTDSYELSFPKGVIDRNETPIEAANRELREETGFA
                     ARELHWIRSMSLAPGYFGARIELIVAEGLYHSPLPGDEPEPPETVEWPLHAAYELLEK
                     PDFTEARSIAALFLVREWLNKRKSYDK"
     gene            16247..17239
                     /locus_tag="JBH85_06045"
     CDS             16247..17239
                     /locus_tag="JBH85_06045"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HAU0945760.1"
                     /translation="MTNNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLEL
                     EPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDL
                     LQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLD
                     ELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKINGTSAAQVINDETWLKE
                     TFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGV
                     DEGLIFSFPCRREHGELKVVENLEFNDFGRERFNTTLNELRSERDTVKSLGLLD"
     gene            complement(17338..18189)
                     /gene="mavF"
                     /locus_tag="JBH85_06050"
     CDS             complement(17338..18189)
                     /gene="mavF"
                     /locus_tag="JBH85_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavF"
                     /protein_id="HAU0945761.1"
                     /translation="MEDPFSVLLKSLQSVFHLEAMRNGKYTFPAVQHLKEATENYNPK
                     ARNTFIELLRAIREALPYIEKWRINFNVIRKSMDALAKLHHMPTIDWNQVLSHPKVSP
                     RFQFSALNHSHHDYDLTTWLEKKVGKPFAQLDHTELTQTLVDNRDRFGFSQKLSNHLK
                     KDPDFLYTIILRSERNFIKISQTRLILYLTDEQLARAIIKHIPVLMHKRKEPFEQIEQ
                     LIHTLNEILSNGRSVSTLLRNTDAKTILENSPLFQMYLSEEYKNRHQHPNKDPDLKTN
                     ESLKPGL"
BASE COUNT         5116 a         3472 c         3941 g         5701 t
ORIGIN      
        1 tattttccca tatttattta ttataaattc ctaaaaatta ctgttatcac ggtaaatttg
       61 aggggggaat aacaaaaagt catgtttagc ctcaaaatac atccattatg gattaaaggt
      121 ttggctaata tggattctga gttcgtccaa aatggattat atgtccgtct aatatggaat
      181 agagcttcgt ccaaaatgga atgcaaatga attttttcga ttatttaatg ctcattggta
      241 gacgtataaa aatatctggg actaatggga cacgtggggc atccatgtca ttactgggct
      301 agacatgtcc ctagcttatt tgagaacttt gggacgtatg ggacacggat aattcctgca
      361 cttaagtaat aaaactaaag gttatgataa attcgcgatt cgcgaattgc gaatttatga
      421 catgttatat ttcattttta gtatcaatca atatccttcg ataacacatc tttgaaattg
      481 atcttttgtg cttgacattc tttgagggaa tacgagatac tttttccaag cttaaggagt
      541 aagcccgatg ttccaacaaa atgtaggcag ttggaagtca aaggattagg agaaaagaat
      601 atcaatcaat tgtccagggt gatactggat gatgcgttga gttctgttca aggaagatac
      661 atctcggcat ttggcagagg tgtaaataac tgaggaattt cctatgactt taaaaaatcc
      721 atcccgttta catctattaa acgaatttga atctgcgcca cattctgcgc tttttaatca
      781 acaaacgatt gctgcagtat taagctgctc cacccagtta cttgaacgta accgctgggc
      841 gggtggtggt gttccctatt taaaaatcgg tcgtaaggtg ttgtatcgaa aaagcgatgt
      901 gttgaacttt ctccaacaac aaaaaattta ttactcaacc agtgacgaag gtcagttaca
      961 gctcgttgag aacgcataaa tttagaatta gtcagaatga attggattca ttccgatggt
     1021 tgactgttgt ttggagaata atgtatgtca caaaatcatg ttattgaatt agccaataca
     1081 ctaaagcagc gtccaattgt atgcgactat accggtggtc gttttcggtt aactaatgag
     1141 gggctaactt atatcggtat tgatagggat ggcactcctt taccacctcg gtggatatgt
     1201 gcaccattgc atatcgttgc caaaacccga gatgctcaga gcggtgagtg gggtcgtttg
     1261 ctggaatggc aagatgatga tgggataact catcagtggg cgatgccatt ggctttattg
     1321 cagggtgatg cctccgatgt aaggcgagag ctggcaagat taggattgag tatttcacct
     1381 catagaactg ctcgtgattt gttagcctcc tatttacaag tctttccagt agacgcacgt
     1441 gcaagatgcg ttgataaact gggttggcat ggcgatgtct ttgtaaccgc ttcccaatgt
     1501 atcgggcaat caacagagaa gattgtcttc caaaatacca atgccattga accggcaatg
     1561 tccatcaaag gcagcgttga taaatggcga gattcaatag gtcgtctggc ttccggcaac
     1621 tcaagattgg tatttgccat ctcggtagca cttgctccag ttctagcaaa gattgttggt
     1681 gaagactcag gaggctttca tttcagaggt gcatcctcat caggtaaaag cactgcattg
     1741 agtctggctg cctctgtttg gggaaaccca caatcttatt gccgtttatg gcgcagcact
     1801 accaatgggc ttgaaggctt agccgcattg cataatgacg gcttgctgat tcttgatgaa
     1861 cttagtcaaa tggatcctag agaagcaggg gaggcagctt atttactggc caatggtcag
     1921 ggaaaaacac gtgcctctcg tactggcaca gtcaggcaat cttctcgatg gtctttattt
     1981 ttcttatctg ctggtgaaga gtccttgacg gcactcatgg caaaatcagg acaacgcatt
     2041 aatgcaggtc aggaaatcag gcttgctgat attgaggcgg atgctggctg tcagatgggg
     2101 atctttgaaa cgattcatga tcagctcagt ccagctagca tggccttatc gctcaagaag
     2161 tacagcagcg gatatcatgg cgcaatcggc agggcgtggc taaatcaagt ggttgctaac
     2221 cggcaaacaa tcagtcgatt cattaccgac accattcaat cttttgttga tatcgtcatt
     2281 cagcctgatg caacaggcca gattatccgt gttgccagac gctttgcact ggttgctgct
     2341 gcgggagaat tggccagtca atttggtctg acaggatgga aaaaaggcga atctttccat
     2401 gctgcgaaga cttgtttcat tgcatggcag gatgcttttg gagttgatgg ccaccgcgaa
     2461 gatcgcgcca ttatggcgca ggtacgcgct ttctttgaat cccatggtgc cagccgattt
     2521 gataatgtca actcacccaa caatgacaag attctcaatc gcgcaggatt ttatcataca
     2581 gatggcgaag ggtttagaat ctacatggtg ttaaccgaga cgtacaaaaa tgagttatgc
     2641 aaaggctttg atcaacgcac cgtgacaagg gttttattac aagctggctg gctgaaaccc
     2701 gcctccgatg gcaaagcctc acacaagcca agaataaagg gagttggcac cccaagatta
     2761 tatgttttta ccggtaagat ttggggaggt gaataaaatt gcctatacca tcggttttta
     2821 cgttgagcac cgaaggtgcg aataaggctc gtgaagtttg gcaaccagct cgctggttag
     2881 ctaacttcac ctatcttgcc ctgcattttg aaatttattt tggaaccgtc ttttggtgat
     2941 tatttgtaat tgttcgttat ataacgatta gtaacgaaaa taatcatgaa taaatagaaa
     3001 taaataataa attaccgaaa gttaccaaaa agggcgttgc atgtgaccta aaaggtcgaa
     3061 aataaataga aataaacgat aaaactcaaa ggattgaata accaaaaata tggagtgtac
     3121 cccatgaaaa aatccttaac agaaaacata acgacttcta aacagaatcc acaaagaacg
     3181 aacaccagaa aacataaagt ggaattccta gctatgcgtg aagacatttc cgaagccttg
     3241 gaaaaaggat ggtcaattat cgtcatatgg gaaacgctta gggatgaggg gagcttcaca
     3301 gcaacttaca atacattcag gttatacgta ttgaaatacc tgaatggcca aaagtccggt
     3361 tattcgcaaa aggacatcaa cgttcagcag ccgaagagac tggctgtaaa tcaagacaaa
     3421 gagagaaagc caagcgctat gccttcattt acctttaatc ctatacctaa tttagaggaa
     3481 ttattataat tggatggatt tttattggtg gatatagttt ccaataagtc ccacatgccc
     3541 caccttcatt gtatggggtg ggggcggcta aaacctagta gcaacgcgcc tgccccaaat
     3601 gtcccctttg tccctgagat attggacaac atgcttatgt gaatctacgt ttataaatta
     3661 tatatgttat caatcgagtc tgagcccatt gattgggatt tacatgaaaa ggggattgct
     3721 tgatggaata gatcctgtat taggatttcg tctaatacag gctacgcttg ctgtattttg
     3781 taacagcatt ttttgaacct acaatagaag taaaatttct atttatctaa ttgatttgcg
     3841 tagaattatt tgggctttag ttgcagatat ttctccatga gttcattaca gtgtgattct
     3901 gatattttag gaatttgttc ttgaggggca tgacgtgaat tgtaactatc aaccctagag
     3961 attttatttc cgttttgacc ttctttgtag tgattatctc cgactacaaa gtaatcagta
     4021 tttttaaaat ttaaattttt ggtttgtccc tcgcctctta ttttaccgcc aagattttca
     4081 attctttctc caaattcctt tttggtttta caggatctaa aattgcctaa gagatgaaaa
     4141 gttttttcag agaattctaa tgcatcgagt gtatgataag gcttttgtgc tggtaaatgg
     4201 aatctgacca taattcgtcc ttgaaagtct ttacttaatt atagtctatg cttgtatctt
     4261 tgtggtttaa tcttgaccaa tgattttgat acatcaattt tgatacatca attgaggcaa
     4321 ttcaatccca taatcccata agaataagat ataatattca aaacttgggc tctaccccaa
     4381 caaagggggc attttaatca agttagtcta gactaaccct ttgatttgac ggtcaaaagg
     4441 aagattaaaa tgcctaagaa agattgtatc ctaaatttgc caggatattc tattaaaaaa
     4501 gtgagcggag agaacccggt ttatattgaa gtaaactatc gttgtgttgt tcgttgtatt
     4561 cattgtggta ataaaaaatt acgcgtaaaa gacagtttta taagacgtat acgtcatgag
     4621 tctattggtt tacgtcgtag ctatttatgc ttaaaggcgc ataaatatta ttgtccttct
     4681 tgcggacgtt attttaatca acgctttccg gggataggta agtatcaaag agccagcgag
     4741 agtttgcgta aacaggtgtt tcactatcac agcaaaggag tcagtcaaaa ggatttggcg
     4801 cgcgacttaa agctgggtaa atcgacggta gagcgctggt atcattatgg ttatgagctt
     4861 cgctataaga agatagcgac tcgttcctgc ccccgagtat taggacttga tgagcattca
     4921 tttaatagaa aggtgggtta tgctacaacc ttttgtgact tggccaaaca taaaatattt
     4981 gatgtagttg aggggcgctc agaaaaggac ttagagagct accttaatac cttggaagga
     5041 aaagagaaag tacaggtagt ctgtattgac ttaagctcga gttaccgcaa gttgatcagg
     5101 cattactttc ccaatgccat gattgttgcc gatcgctttc atgtgattcg tttattgaat
     5161 caactctgtt tgcagactta tcagcagatt gatcccgaaa tgaagtatca gcgaggcctc
     5221 ttggccgcat tgagaactaa tcctaataat ctcacggtaa agcgactcaa tagacgagaa
     5281 cgttatttgc aacagcagcc tgtcattgct gcaatatatt actttaaaca gcgattacat
     5341 cggcttctca tgcgaaaaca tcgtaccgca aaacagtgta cgcgtttaat acctctcttt
     5401 cttaaactgg ttgccagtct gaaagaaagc ccttttgaat cactcaaaac gttaggtaaa
     5461 acattatatc aatggcggga agaagtagtt agaatgtggc ggtttactaa aaacaacggc
     5521 attactgaag gctttcatcg taagatgaaa ctgattcaac ggcgtgctta tgggtttaga
     5581 aattttgaaa attacaggtt aagggttaaa gttttgtgtt cttgattagc gcccccggaa
     5641 atgggaagag ccaagacccc tttattttct gtctacattg cgtctacatg actttttcga
     5701 attttctaaa actaccgtaa ctacttgatt ttattggtgg gcccactagg acttgaacct
     5761 aggaccaacg gattatgagt ccgctgctct gaccaactga gctatgggcc cggagagggg
     5821 gtcattttaa acttaatttc tttaatgttc tactattttt tatatttttt taatgactgt
     5881 ttgtaaaaac agtcattaaa ttaaccttcg tctccttcaa ggaagcttct tagcttttct
     5941 gaacgtgaag ggtggcgcaa tttgcgtagt gcttttgctt cgatttggcg aatacgttcg
     6001 cgggttacgt caaattgttt accaacttct tccagagtat ggtctgtatt catttcgata
     6061 ccaaaacgca tacgcagaac cttggcttct cgtggggtca aggtttccag tatttctaaa
     6121 gtggcttctc ttaaaccttc cgctgtagcc atatcgattg gcgattcaat gttgttgtct
     6181 tcaataaaat cacccagatg agagtcgtca tcatcaccga caggggtttc catggaaata
     6241 ggttctttgg ctatctttag aactttgcga attttatctt cacttagctc cattttttcc
     6301 gccaattctt ccggtgtcgc ttcccggcca gtttcttgca aaatttgccg agaaatacga
     6361 ttgagcttat tgatggtttc aatcatatga accggaatac gaatagtccg cgcctgatcg
     6421 gctatggatc gtgtaatcgc ttgtctaatc caccaggtcg cataggtaga aaacttatag
     6481 ccacggcggt attcgaattt atcgactgct ttcatcaggc cgatgttgcc ttcctggatc
     6541 aaatcaagaa actgcaagcc gcggttggtg tattttttgg cgatagaaat cacgagacgc
     6601 aagttagcct cgaccatttc ttttttagca cgtcttgctt tggcttcgcc aatagacatc
     6661 ttgcggttaa tgtctttgat ttcactaatg gttaaaccat attcgatttc aaaagaggcc
     6721 aacttggatt gtaagcgcag tatttcttcc cgattttctt ctatacgctg aagatcaagt
     6781 tttttggcat gtttgctgat aatggtttct aaccagccta gatctgtttc ctggcctggg
     6841 aaggtatcta taaacaattt tctggggatg cgtgcttttt cgatgcaaag acgcataatg
     6901 cttctctcaa attcacggat atgatttcgc aattggcgaa aatgacgagt taatttatca
     6961 acttgtctgg aagtcaattt gagtttcaga aaagattccg acatggaatc gagcaactcg
     7021 accgtttttt tattcgtacg gccatgttct ttgagggctt tcattgcctt ttcaaaggct
     7081 tcacgcagtt catcaaagta aatcttcgct tgctcaggat tgggtccatc atccacatca
     7141 gatataccac cttcgccgtc ttcatcttcc tcatccacat caagaagtat ttcttcctgt
     7201 tgctcttcat ccagcatgga gccaatgtta gtggcaggtg ctatttcttc atcaacatcc
     7261 gcaaaaccac taatgatttc attaaggcga atttcttcgg caaggaaacg atcatagtct
     7321 tcaagaacca gttgcactgt ttccggataa tgcgccaggg attttaggac ctggtaaatt
     7381 ccttcttcaa tgcgtttggc aatgcggatt tcaccttcac gagtcagcag ttctactgta
     7441 cccatttcgc gcatatacat acgaaccggg tcagttgttc tacctgtttc tttatccaca
     7501 gaggcgagta ccatggctgc ttcttcaata tctgggactt cttcagtatt taataagagc
     7561 gcaagttcat cttcactggg tggaagctca aaaactttga tgttcatgcc ttccagcatg
     7621 ctaatgatta catcaaaatg ctccgtatcc acaatattag gtaataagtc attaatttga
     7681 ctgtaagtca aataaccttg ctctttaccc aggctaatga ctttcgtaat ttgtgagctt
     7741 tgctgatctt ggtcattcat ggtcataggc acttctgttg gaacaatggg aaattacaaa
     7801 aagttttaaa ttataaactg ggtagctgca acataccagt atttcagtat ttttattttt
     7861 caatttcagc ttgcccatgt ctttccttta ataaattttg taaactgagc cgttcagctt
     7921 ctgttaagcc agtttttctg gatttttcta tgtattgtcg tatcaatatc tcacgatttt
     7981 gtttttgtaa aaataataag acatcaataa attctttagt cagctcctgc tcaggcactt
     8041 gatgatccca ggctgccaat ttaactatca attcaaaata actgctattg cgccagaatt
     8101 caatgagggt ggcagtattg gcattgggct tgtcttttaa ttgttgcaat aatttcaata
     8161 aaatatgatg ctcctgttca tggagcaaag caggattgat ttgttgtatt gctatagaat
     8221 aaatttcggg gttttgtaag aggagcgcga tagcaatacg cagtggtgaa cgagaaatag
     8281 cagcttgtac ttccggcttg ctttccgatt tatcagtaat caaattagtt aaccgatggc
     8341 tttcaatatg ggttaagcgt gacaggtcat caataagcaa ctgtttgtat gagccctcaa
     8401 ccattttttg caaatagggt ttcactgcgt tgataagctg tgtttttcct gcagggtttg
     8461 acaaattaat gtctttactt aacgtatcaa agaaaaagcg gtggagtggt gttgcttgtt
     8521 gcaagagctc gaggaaaccg ttttttcctt catttcttac caggctatcc gggtcatgtt
     8581 cattcggcaa gaaaataaat ccggcatcta atccggcatt caaatgcggt aaactgctct
     8641 ccaatgctcg ccaggctgct tgtttacccg ctgcatcacc atcaaagcaa aaaatgagat
     8701 gtttggtatg ctttgccaat agttgtatat ggaatgtgct ggtggcagtt cccaatgttg
     8761 ctaccacatt aaaaatgcca tgttgtgcca aggcaatgac atccatgtaa ccttcaacaa
     8821 caataatact gtcgggattt ttctgctgag atagaacttg atgtaagcca tataactcac
     8881 gacttttttg aaaaagtact gtttcaggcg agttaaggta tttgggtttt tgatctttat
     8941 cgagtacacg tccaccaaaa ccaatcacac gaccgtttct gtcatggatg gggaacataa
     9001 ttcgattacg atatctatca taaattttac cttcatcgct tttaatgagc ataccggtac
     9061 tcaatagttc acgctgattg tttgggaaag ctttttccag gttatgccaa ccttcaggtg
     9121 catagcctaa atgatatcgt ttggcaattt ccccactaag acctcggttg cgaaggtagt
     9181 caattgccac ttgtccatta tattttaatt ttttttggta atattggctg acttctgaca
     9241 tgagattata gagattgaga gatgatttat gtttctctcc tgtaccatcc cgtgggacac
     9301 ttaaacccaa gcgtgtcgcg agggtttcaa cagcatctgt aaaaccttga ttcagataat
     9361 tcattacaaa actgatggcg ttacctgaag cgccacaacc aaaacaatga taaaattgtt
     9421 tttttgcaac gacattgaat gatggtgttt tctcattatg gaaagggcaa catgcaatat
     9481 gactgttgcc tctttttttc aaaggaacat atccgtctat taattccacc aaatcagtgc
     9541 ggtttaatag atcatcaatg aatggctgtg ggattaagcc agacatattg gaactcagct
     9601 taatttcgcc tttatccggg cgctgacttg ggccatgtcc gcgcgtcctt gtaattttgg
     9661 cttaaggata gccatgactt tacccatatc agacattttt tcagcgccag tagacttgat
     9721 cgcgtcgcag attaactctt caatttcatt gtcagttaaa ggttcaggca ggtattttga
     9781 aatgatattc aattcaaact gctcctgggc aacgagatcg tcacggcttg ctttttcaaa
     9841 ttgagcaata gattctttgc gttgtttgga cattttatcc aggatgacta acatgcgctc
     9901 gtcatccact tcaatgcgct catcaacttc aatttgtttt accgcagcac tgattaagcg
     9961 taaagcattg agcaagtttt tgtcctttgc gcgcatagcg tctttaatgt cattgttgat
    10021 ttgttctttt atagtcattt taattcctta aaaaacaaaa ggtcacatac aatgtgacct
    10081 tggtgtaata taggacgagc tgcgatttac taccgaaact gccacgaagg ctaatttcaa
    10141 ataaaaacaa ttaaaaataa cagagcttcc aaaatagggc actgtttaag tgcctcacgc
    10201 aaacttgctt tttagtgcag tcaatcttga aaaaatcaga tcaggtagtg ctttttttac
    10261 gtcggtgacc aacacctcgt cttgaactaa catcacgaga tattttttta agatgacgtt
    10321 ttactgcagc agcttgcttg cgcttacgct ctgcggttgg tttttcataa aactcacggc
    10381 gacgtaattc ggttaaaata ccggcttttt cacaagagcg tttgaaacgt cgtagtgcat
    10441 attctgggtt ttcgccttct tttacacgaa cggtaggcat taactagtcc tctggttatt
    10501 taatcttaat aggtgggcaa ttctagtgct agattttcca cacgtcaaga ttaatctata
    10561 cgtttcttgc tattttagca aattatcaag acattgttct ttaatttaat ggtatctttt
    10621 gtctgtgata taattgaaaa atgattaaaa tctggaaaat tgattccgat tattgaggta
    10681 gttcatgctt gtattgggta tagagtcttc ctgtgatgaa acaggtgttg ctgtctatga
    10741 ttcagaatca ggattattgt cccacgcctt gcattcacaa attgccactc atcgtgtaca
    10801 tggcggtgtt gttccagaac tggcatcaag agatcatgtg aattacttgg ttcctttggt
    10861 cgatgaggta ctaactaaag cgcaaattcg taaaaaccaa ttggatggaa tagcttacac
    10921 cgcaggacct ggattaattg gcgctttgtt agttggctcc tgctttgcca aaagtctcgc
    10981 ctacgcctta aatatcccgg cattggctat tcatcatttg gaagcccatc tgttagccgc
    11041 aaaaatggaa accccatctc tggactttcc ctttattgcc ctgttggttt ccggtggcca
    11101 ttgtcaactg atagaagtaa ataatattgg tgagtatcga ttattaggag atactctcga
    11161 cgatgcagta ggagaagcct ttgacaagac agccaaactg atggggattc cctatcctgg
    11221 aggagccgtg ttggcaaatt tggctgatca atgtttatca actccctatc aatttccccg
    11281 tcccatgact gacaggccag gcttggactt tagttttagc ggactaaaaa ctcatgcctt
    11341 aaacacctgg aatcaaagtg aaaaaaaaga aagcgaccgc tccgaaattg caaaagcatt
    11401 ccaacaagca gtagttgaaa cactaattat aaaatgcaaa agagcaatta aagagtctca
    11461 atcaaagcgc cttgtggtag ccggtggagt aggagccaat aaagcgttgc gcagcgcttt
    11521 gcaaaaatgg attaaggaca tccaagggga agtgtacttc cccgctctgg aatattgcac
    11581 agataatggt gcaatggtcg cttatgcagg atgtttgcgc atgatgcggg gggagattga
    11641 tggggggttg ggggttatag tcaaacctcg ttggcccctc gcttgaacgc ccgtcttcgg
    11701 cgcatcttgc cagatcattg ctctaaaaaa tgctcatgta ctcatctata cactccgctt
    11761 ttttagtcgc aatgatctgg caatttgcac tcgaatatgg gcgttcaagg gtaggtgact
    11821 tcggcgcatc tttgcttgtg cattaatagg tgctgcgcct tattcctttt ctttgactgt
    11881 tttcgtttta ggtttggttg atttcggttt tttagttgtt tcttccttgc tggttgtctt
    11941 ttttgctttt gttgttgctt ttttgacttt tggttttttt acagcctcag cttgttctgt
    12001 cttttctgtt tcatcaatat tcgtatcaat gacttctttg ccaggaaact cttgctctgc
    12061 agaagtagct ggagaagcct ccattatttc ctctatcaca ctgtgtttga acttgatttt
    12121 aggctctttt ccatctatca aacgattaaa attatctctg tgtttgtaga gaaccagaat
    12181 ggtgatcatg aataatgggg ggaaaatatt aagattaccc accaatatta aggagtaaaa
    12241 aggagctaaa gagatagaag ctattgatgc taaagaggaa tagcgccaga aatttgctac
    12301 cagtaaccag gtcgcggcaa ccatgacacc aattataaaa tgaaatgcta acaaggctcc
    12361 tattgttgta gcaacacctt ttccccctct gaaatgaaag aaaacagggt acatatgacc
    12421 aacaacggct gctaaagcag taaaggcaac ggttacaggt tcggcactta aaaatttggc
    12481 caggatgaca ggaagtatac cttttaaagc atcgaatacc atgaccataa taccgtactg
    12541 cttccctcca agacggagta cattagtagc ccctgggttt tttgaaccct cttctcttgg
    12601 gtcggggagc ccgaacgtac ggcacactat gatagctgaa ttaatggagc ccattaaata
    12661 accaactagt attagaaata taaaaagcgc caccgatttc tccttactcg ggaataattt
    12721 ttattatcaa ccaatctcaa ttaacaggca attttaagat agaaaatatg ccaagactag
    12781 ataatagaat tcatttcatg ttatttcaat ttaattccat gtttagtgct ggaatgagtg
    12841 taggaattga cttgtttatg caaacagcag ccatggttgg tataatttga tccaacaaga
    12901 gcgttcatat tgctaaaaaa gaggatgttc catagaattt gaattatttg caatagtttg
    12961 agacggatac tgaatgttgc tttttagtcc tgttcggtgt gtcactatca ttctactcca
    13021 ttatttaagg aaattttact aaagctatgg atgccattca tctcctttct gcaacagaaa
    13081 tcattcgccg cattaaaatg aaagaactct cggctgcaga ggtcatggtg gcgcacttaa
    13141 accatattga taagattaat cctgtaatca atgcgctcac cgaacgtatt ccccctgagg
    13201 aatgcttaaa gcaggcaaag gaaattgaca agagtatctc ttcgaaaaaa aatctgaaca
    13261 agttaatggg gttgcctgtt gccataaaag acgctttgta tgtgaaagga ctaatttgtt
    13321 cttcggcatg ttcaggattt tacaagggag aaaaagcagt acgtgatgcg accctggttt
    13381 ctcgactgaa aaaggaagga gcaattattc ttggcttaac taatgttcct gaattgtgtc
    13441 gcggtggtga ttcggataat ttaatctatg gacggaccaa taatccttat gatctggcaa
    13501 gaaccagtgg aggcagtagt ggtggttccg cggctttgat cgctgcagga ggcgttcctt
    13561 ttgctttggg ctccgatggt ggaggtagtt taatgcagcc tgcccattgt tgcggtattg
    13621 ttgcattgaa gccaacacat ggccatcttc ctcatacagg atctgtaggt ggggattcct
    13681 atggtcttat tggcaacctg atttcttttg gaccaatggc tcgttctgtc agtgaccttc
    13741 gtttaggact ctccgtgctt gcgggttctg accaatatga tccttataca aatccggttc
    13801 ctgttatgcc tgctgcacca ctaaaaaaat tacgtgtagc ctattttaca gagaatggtt
    13861 ttacgccagt tgatgcggag atacagaacg ttgttaaatc agcagccttg gctttgcagg
    13921 atgatgtggc tatagtgagg gaggtacgac ctgattgtgt cagcaaggct tttgatttgc
    13981 actgggagct ttttctcggg ggcgatcgcg gagcgggatt taaaactatg ttatcggaat
    14041 taggggttaa caatctgtca tgggaattac aagagttctt gcgtcaagcg gaacaaacgc
    14101 aattctcggt gactcaattg catcaacgca tgcgtgaaat cgatttgttt cgtctggaac
    14161 tcgctttatt catgcaagat tatgatgtat tgattagtcc agtgtttcca acagtagcaa
    14221 aaccgcatgg gattgggatt aaagaaatca gcgatttttc ctatgcgatg acacacaatt
    14281 taagtggatt tccaacgatt agcctaagat gcgggacttc agccgagggg ttgcccatta
    14341 atgtattaat agccgctaat cgctggaaag atactacctc tctggctgtt gcagaacgcg
    14401 ttgagcaatt aatgggggga tataaacccc cttctctaat ccactctctg caatgaagca
    14461 agaatcaata atttttgaaa cagcgaacta gggcagaaac aaggcttgca aatcattagt
    14521 atattgcctg cctaatggtg ttacttgcca atgagtatct gttaaattaa tcaattgttt
    14581 cttattagct aatttcagca agggtaaaag ctgattaagt tccaatcctg tcgttgtcgt
    14641 aaataagtct aaaggtatgg attgttccaa ccgggttgta ttcagcataa actcaaacaa
    14701 caattcttta cctgtaatgg tttcgcaagc agccagataa ggtttctcat tatccagata
    14761 atctttgggt tgacggtgct tacgggttct tattattgcg tttggggttg tcatttttcc
    14821 atgagcacca gcgcctatac ccaaataatc accgaatagc caataattga tattgtgtct
    14881 ggcttgcttt tccggtttgg aaaaggcaga aatttcatag cggtgatatc cggaattatg
    14941 taacagggca aatccttgtt cctccagcaa gtaatcttct tcttcagaag gtaggggagg
    15001 agtatgcttg taaaatacag tattcggttc tatggttaat tgataccagg ataaatgctc
    15061 aggttgatag gataaagcgg tcttaagatc ctgtaatccc tgcgttacac tttgattggg
    15121 taaactgtgc atgatatcaa gattgagatt atcaaagccg gctttacggg cagtatctat
    15181 agcagaatgg gcttgtttct cgtcatgaat acggccaaga atttttaaat gattgggatt
    15241 aaagctttga attcccaaag aaagacgatt gattcctgat tgtctataat cagtaaatcg
    15301 atgttgttct acagtaccgg gattggcttc cattgtaatt tcaatatttt ttgcaaaggg
    15361 gagtatgcgc tttaattcat taaataagtt gttataagct tcggctgaaa ataaactggg
    15421 tgtgccgcca ccaataaaaa tggagttaat ttcacgggta ttgtatgagg aaatatccgt
    15481 tttaaggtct tcaatcaaag cctgaatata ctggtgttcg ggtaaaacat cagggctttt
    15541 gtgtgagtta aaatcacagt atgggcattt tctgatgcac cagggaatat gaatgtacaa
    15601 ggataacgga agcattacaa tttttaaact ggcttgttag ggaatgcgat agtatcatga
    15661 tagcaatttt gctacaaaat taagtgatga ccattgatgc gaaataaacc aaaatgtaag
    15721 caaaggaccg tgatagccaa atcccggttg tttacagttg aagaaatgta tctggaattt
    15781 tccaatgggg ctcagcgagt ctatgagcgg attaaaagtc atggtcatgg tgcggtgtta
    15841 atagttgcat tgactcccgg agaatcatta ttattagttc gggaatacgc cgcaggtact
    15901 gattcttatg aattatcatt tcccaaggga gtgatagaca gaaatgaaac ccctatagaa
    15961 gcagctaaca gagagttacg tgaagagact gggtttgcgg caagggaact gcactggatt
    16021 cgttccatgt cattggctcc tggttatttt ggagctcgca ttgagcttat tgttgcagag
    16081 ggtttgtacc attcgccgtt gccaggtgat gagcctgagc ctcctgaaac agtagagtgg
    16141 cctttacacg ctgcttatga gttattggaa aaaccggatt ttaccgaggc gcgcagtatt
    16201 gctgcgctat ttttagttag agagtggttg aataagagga aatcatatga caaataatcg
    16261 agtaagagtt gctgtcacag gtgcagcagg gcaaataggt tatgccttgg tgtttcgtat
    16321 tgcttccggt caaatgtttg ggccaaatac tgaagtggaa ttgaatttac ttgaacttga
    16381 gccggcactt ccctcactgg aaggagtcgc tatggagctt gatgattgcg catttccctt
    16441 attaaaacgc attgtttgta ctgcagattt gaataaggca atggatggtg ttaactgggc
    16501 attattagtc ggttcagttc cgcgaaagca aggcatggag cgttctgatt tattacaaat
    16561 caatggtggt atattcacca aacaaggtca ggcgattaat gattatgcca gtgatgatgt
    16621 acgggtattt gttgtgggaa acccttgcaa taccaattgc ctaattgcta tgaatcacgc
    16681 aaaagacgtg ccttctgatc gtttttatgc aatgaccaca ttggatgagt taagagctcg
    16741 tactcaattg gctaaaaaag caggcgttga cattactgca gtgactcaaa tgacgatttg
    16801 gggtaatcat tccgccaccc aatatcccga tttttataac gcaaaaatca atggaacttc
    16861 tgctgcgcaa gtcattaatg atgaaacctg gttaaaagag acttttgtat caaccgtcca
    16921 gcaacgagga gccgcagtga tcaaggcacg gggttcatct tctgctgctt ctgccgccaa
    16981 tgcgataatt acaggagtta atcatttggt tacggatact cctgctggcg aatcgttttc
    17041 aatgtgccgt cgctcaaagg gagagtacgg agtcgatgaa ggtttgattt tctctttccc
    17101 atgccgaaga gaacatggcg aattaaaagt ggtcgagaac ttggagttca acgattttgg
    17161 ccgcgagaga ttcaatacca ctttaaacga attacgaagt gagcgtgaca cggtcaagtc
    17221 tttaggctta ttggattaac cagaccgggt taattcttga tagatttgat tctgttgttt
    17281 ttgctgatta ccctgctttg tgaatttttc agggcagggt gctgtcgcac cttggtttta
    17341 taaaccaggt ttcaatgact cgtttgtttt taaatcaggg tctttattgg gatgttgatg
    17401 tctgttttta tattcctcac tcaaatacat ttgaaataat ggcgaattct ccaggatggt
    17461 tttagcgtct gtgtttcgta aaagagttga tacggaacga ccattggata atatttcgtt
    17521 gagagtatga atcaattgct ctatttgctc gaagggttct tttcttttat gcatcaaaac
    17581 gggaatatgc ttaattatag ctctggcaag ttgttcgtct gttaagtaaa gaatcaagcg
    17641 ggtttgagaa attttgatga aatttctttc tgacctgaga atgatagtgt ataaaaaatc
    17701 aggatctttt tttaagtgat tgctcaattt ttggctaaat ccaaacctat cccggttgtc
    17761 aaccagcgtt tgggttaatt cagtatgatc caattgagca aagggttttc ctaccttttt
    17821 ttcaagccag gtcgttaaat catagtcatg atgagaatga ttcagtgcgc tgaattgaaa
    17881 tcgtggcgat acttttggat gagataagac ctgattccag tcaatagttg gcatgtggtg
    17941 caatttagcc agagcatcca tggattttct gattacatta aaattaatcc gccatttttc
    18001 aatataaggc aaggcttctc taattgctct aagcagttca ataaaagtat ttctggcttt
    18061 tggattgtag ttctcggtgg cttctttaag atgttgaact gctggaaaag tgtacttgcc
    18121 atttctcatt gcctctaaat gaaatactga ttgtaatgat tttagcaata cagaaaaagg
    18181 gtcttccata ccaatattcc tccacaggcc cttctttaaa agtagtttat
//
LOCUS       DACVWI010000047        18155 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.047, whole genome shotgun sequence.
ACCESSION   DACVWI010000047 DACVWI010000000
VERSION     DACVWI010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 18155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18155
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.047"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            5..1444
                     /locus_tag="JBH85_06055"
     CDS             5..1444
                     /locus_tag="JBH85_06055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2382 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945762.1"
                     /translation="MALNFLNRIERCLVPQSNPQIMKQLLSALGLDKLTTGNEEYKFF
                     IQTIRKKAIDLNPLIHKIKSDILKNESLCILLAYIEENELIDDAEIKNASFTIQLQIN
                     LLCLLEAITVTMANSNDFAHDIYNHMMKQRGKGATGNPFYNFLFGIPSRATLFERLKL
                     ISIDPGLTSIIFHRLMGTNPETQADLDDFVSQSRLSGWNADVELANFDVASTSTLPAM
                     GVNILEAVWEDSTGHNKNTSGILNAQAGLGLIGIMEEKEYTTSFKLAETTLPQGTRLH
                     SDLGYSLIPELKVDNSPKKVSQFHIDERWMNLYNSWNLCFVIANIDPVFVPLKLLIPS
                     VFSAEPSNYKETRVLTLFLVANLFLNQQTLNNPLFSNNFSFRNGDAIMKKWGEINKNH
                     ASELLQQCCAKEYKEPDTLYNSILGEHPHLNFVLKLLSYFQDSHQFRLTKKAKQSTLS
                     DYLFFSGNAASADNSEQLNLASQPSLNKV"
     gene            1683..2609
                     /locus_tag="JBH85_06060"
     CDS             1683..2609
                     /locus_tag="JBH85_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0945763.1"
                     /translation="MNILSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEEL
                     KVTLLIRSTTRLIVTESGHRLYEKALDLFEQLEVVKVIATPDQFELNGIIRLYLTVTP
                     AIPYLTSLSIQFMRKYPGIEIDFIVGSDTKELYSSTFDLAISFDDVKHAKLVCKRLFS
                     IQRNVFASPDYITQYGLPQTIDELPKHNCLINTLYGLQNKWVFNKKIIHVSGNFKSNN
                     AGVLKQAAVAGLGLLLAPYFSVYEEIKNEALIQVLPHKSSPDINLYAIYPKSIMDEQK
                     INLLLNFFVKRPCQKTLRHPLLMKIIKDGSVI"
     gene            2692..4617
                     /locus_tag="JBH85_06065"
     CDS             2692..4617
                     /locus_tag="JBH85_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HAU0945764.1"
                     /translation="MSKDKFNERANSMPSTRNIETHNDSNPTLRALSLSALGIVYGDI
                     GTSPLYTFKTVILLAGGGTPAVNTIMGSVSLIIWTLIIIASVKYIHFALRIDNDGEGG
                     ILALMSLLSLKLKQRPFIIAVGLMGAALIYGDGTITPAISVLSAVEGLEILSPSLKYY
                     VLPIAITILITLFAIQSKGTATIGKAFGPVMAFWFLTIGILGARGVIQHPSVLAAINP
                     IYGLSFLFSNGATGFFILCGVFLCVTGAEALYADLGHFGTAPIRCAWFGLAFPSLIFN
                     YLGQAALVLEGASTEHNIFYMLCPGDFLLPLIILSTVATIIASQAIITGAFSMTRQAM
                     QLGWLPRLRVTQTSSEGYGQIYIGVVNWLLMLATLGLTIGFGSSEKLAAAYGIAVSAT
                     MLCTTLLLFIALHKLWKWDIITSGLVAGLFMIVDASFFAANLTKFINGGYIPITLAII
                     IYSMMYIWHKGYQTIAIKQKEKNITVASFLDSIQKERVVRVPKTAVFLTSKEQDIPPI
                     LVWHVKKNHVLQDKVIILKINNLSIPRCKPGDRLQIVETGTGIWHAVANYGFMEQPHI
                     PKLLKKLEAQGYDINIKDITYYIGHETIFVRNVRHTLSKYIKILFVFMHRNALPMSNY
                     FHLPPESVFEIGRQIEI"
     gene            4827..6614
                     /locus_tag="JBH85_06070"
     CDS             4827..6614
                     /locus_tag="JBH85_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945765.1"
                     /translation="MIEMVQFAKPSIGPPADCGRINLLIGRELGQYQNIIQKWIANLE
                     DNAKQRPSNISEFKFGKTLGYLLLQSLKKANLHPDNFRSFGFDPWEEPHYQSALIAGK
                     YVITQDTYRIYFDIPKIDHSDEEKIKANQDHAQILYFTTMTNDGLMVFTFEDKVENIN
                     SRLFVELAKNIKINSEAWSQLIQFTEKNLLYEQDDISSKLPQVFGLILYASISPEHRE
                     DVFNNLCPLLLKSKNFESEHVPEFRSITTRLLKDIIPDYEAKVMAFLHKNNNPMRYSE
                     RDISEQGALLGLSDEKIDVVQNEMRERKALEVQNNNRSQAIELKKTLIGAVDEYLRWR
                     NNESKETDYQKSSGAFTWLRHYTDFGKNRANDLKNELNKAQDLKTMLDVLQKHFANNS
                     RLHNHSLDSYLLRAVYKDFNKFNSIFNFEHLAIKNDTDANREWLREEMLGMVAKTNMN
                     VTLEKSINSRQESPTLPNKTKVHISIMKIPANEREENILAVHTALRNDELLRNQDGSV
                     PAIIKEIRDIVGKIDPSEEENIANAIIEIKRTIADNSDNNYNENAHDIIKAFENPSCC
                     DFRKIRAALTTNHAIDEIMNPVRVGMQLN"
     gene            6940..7503
                     /locus_tag="JBH85_06075"
     CDS             6940..7503
                     /locus_tag="JBH85_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945766.1"
                     /translation="MTIYFLFGKTGSGKSYIGELLRQLSIVHIDGDNHITQKMRDCLI
                     EDEQMTPEMIDEFVDVLIDVIKTQKTKTPNESFVISQAMYLDKHRLKLLNAIPELEFV
                     MIDVIPVLRASRITNRFRNQESKVSLRYATRMDAFFEYPSHETIRLENNQSSDETLIE
                     QIREKMPALFNMESKEELNSGIQLQFA"
     gene            complement(7618..8544)
                     /gene="leo"
                     /locus_tag="JBH85_06080"
     CDS             complement(7618..8544)
                     /gene="leo"
                     /locus_tag="JBH85_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease Leo"
                     /protein_id="HAU0945767.1"
                     /translation="MKNKIVLLAPVSLSFLFSFSTYAADYEFNGLSLSASLGILSGKA
                     HEYVYHPETDTKLSQLDWRIKNAPIIKGELNYDVLDWLSMNGQGWTTLVKNKAAMDDY
                     DWLNPYQDTWTHWSHHEDTHLNYANELDMSLRAWLMQKQNYKLGLATGYQWNSFDWKA
                     TGGCYQYNGGLYAGCFPGDQPGIGYQQKFRTPYVGLAGRYFINNFEFSGVLKFSDWVS
                     ARDHDEHYARNLTFNERGNSSRYYAATIHSGYFLKPNTKIFVEASYNHYPNGRADTEI
                     IDNDTGERSYFGDSAGLSNKHYTVALGLQYLF"
     gene            complement(8672..10402)
                     /locus_tag="JBH85_06085"
     CDS             complement(8672..10402)
                     /locus_tag="JBH85_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HAU0945768.1"
                     /translation="MTLIGLVVMIFLFTMQKYNDFALLTGELFACIKIIRTCENQMNK
                     NLSALSLLWISITSMVGSGWLFGSLYSAHFAGPAAIIAWPLAGFLLLFVALSYAELGT
                     MFPQSDSLACLPLYTHGRLTGIIMNVMTWFSLAILPVIETQGVIQYASNYIPDLVSHD
                     ALHYRNTPTGYMLSLLVLMSFILFNYFGIGLFARINAAFTIWKIIIPILTIASLVTMS
                     YHPGNFFQHGGFMPYGWQGVMAAMSSGGVLFSLLGFRQVVIMMGELEKPGQYIPLILG
                     GSLVFVTLLYTGLQWSFIGSVSEQALEKGWVNLSFTGDAGPFAALAALAGMLWLSILL
                     YADAFISPYSTGLVYSTTAAHMLSSMGSVVPTPVILTKQNRYQVPWVSLGVNFLLAAT
                     MSLVLHGWQEMSAFLVAILMISYSIGPVALVCLRQQLPHYKRPFRLQGSNLIGFLGFY
                     VCTVGVYWAGFHSVRKLLVITILGVVCSFLYCLMKNTHREIDSKQALWFIFYLFGLGI
                     FSFLGNYGGKHILPQYWDLLYLLVFSLLVFGFALLSRKPSAHTQNMVAQNTRTTITAP
                     AFSIERYDIA"
     gene            10580..12775
                     /gene="katG"
                     /locus_tag="JBH85_06090"
     CDS             10580..12775
                     /gene="katG"
                     /locus_tag="JBH85_06090"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HAU0945769.1"
                     /translation="MNYDLRPGVSMDGKVGSTTTGCPVIHGGMTSTGTSNTAWWPNAL
                     NLDILHQHDTKTNPMEKDFNYREEVKKLDFEALKKDLHALMTDSQAWWPADWGHYGGL
                     MIRMSWHAAGSYRVADGRGGAGTGNQRFAPLNSWPDNVNLDKARRLLWPIKKKYGNKI
                     SWADLIVLAGTIAYESMGLKTFGFGFGREDIWHPEKDVYWGSEQEWLGAKRYDGKSRE
                     SLENPLAAVQMGLIYVNPEGVNGQPDPLRTAQDVRVTFGRMAMNDEETVALTAGGHTV
                     GKCHGNGNAKLLGPNPEAANVEDQGLGWINKTTRGIGRNTVSSGIEGAWTTHPTQWDN
                     GYFYLLLNYDWELKKSPAGAWQWEPIHIKEEDKPVDVEDPAIRHNPIMTDADMAMKMD
                     PVYRKIAERFYQDPDYFAEVFARAWFKLTHRDMGPKTRYIGPDVPKEDLIWQDPVPAG
                     NRAYDIAAAKAKIAASNLTIGEMVSTAWDSARTFRGSDKRGGANGARIRLKPQKDWEG
                     NEPQRLTKVLQILEDIATDTGASVADVIILAGNVGIEKAAKAAGFDIIVPFAPGRGDA
                     TDDMTDAESFDVLEPLHDGYRNWLKKTYDVRPEELMLDRTQLMGLTAHEMTVLVGGLR
                     VLGTNHNNTQYGVFTDRVGALTNDFFVNLTDMANVWIPSKDNLYEIRDRKAGNIKWTA
                     TRVDLVFGSNSILRSYAEVYAQDDNKGKFIQDFVAAWTKVMNADRFDLA"
     gene            complement(13126..13556)
                     /locus_tag="JBH85_06095"
                     /pseudo
     CDS             complement(13126..13556)
                     /locus_tag="JBH85_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842422.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13552..14790)
                     /locus_tag="JBH85_06100"
     CDS             complement(13552..14790)
                     /locus_tag="JBH85_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HAU0945770.1"
                     /translation="MDMDKRIIAAASFGTLFEMYDYAIYGFMAPILAPLFFPTTDKHT
                     ALIATFGIFAAGFLVRPFSAYWLGNLGDQIGRKKTLTITLMVMTFSSGFIGLLPTYQE
                     AGIFAPILLTFCRLTQGVSVAGEMTLASIYIYENVSMRHKGLAVSFVTLGSICGLLLA
                     IIVSKITMLFFSKQHLDSFWRFPFLIGIFVGFAGLYLRSQTRELTDFAKVVAQRQSHP
                     ILNAWHYRKKAIAAIFLLAIYCNSSFYTFFVYMPSYLQQQELPLTTAMDVIIIGMICY
                     SMGLLLSGFTSDILGRRFPLAVSLIATLCTVLVINYLINTGTLLQITVACSVLAVIIS
                     FFIGSAFTASLEQLPQEERASGFTLFFNLSNSLFGGTAPLIILLLSYAFIHFAFSIYL
                     MVMALLTLPALWLIQEKSTN"
     gene            complement(14826..16130)
                     /gene="sdbC"
                     /locus_tag="JBH85_06105"
     CDS             complement(14826..16130)
                     /gene="sdbC"
                     /locus_tag="JBH85_06105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdbC"
                     /protein_id="HAU0945771.1"
                     /translation="MPNSSIQIWLQRQIALRTFPPNREDWYVKNGFGNSEMSLEERFA
                     SFVEAIRQEDSPYHEQLSGIDFQRFEIEVTLANQKTCMTEVIGFQNNSNQSSSTPNEK
                     FKAVGKGKHVIYFTGIGTQYQDCLIDIAKAVQITGAHYYAFEYPGMRKLGGEVLEVND
                     MVNTGIALANTLLEKGISIDDILFQGDSFGAAVAKKVSDQFKLQSNVTVRCILNNTFS
                     TFQAAVEGNLGAFSTLRYTVRPLLRYTGWDIRPGEGYGQDTPYQIHVNHTGDLTLGAG
                     HATLAESIESNSQLEHFVDPCPEEYRIKRDIYKQWHWASLSEQGITFLETKYGRNSDG
                     QLDTHLADLYLLKYDTGLGVYESFICKYLEDSNDYIASHPQKLSLDELPRPLESETVS
                     LRQLIVSVLPSRPSIAGFFSRSTPVIEEVETEKQEQKSIELK"
     gene            16398..17282
                     /gene="legL6"
                     /locus_tag="JBH85_06110"
     CDS             16398..17282
                     /gene="legL6"
                     /locus_tag="JBH85_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegL6"
                     /protein_id="HAU0945772.1"
                     /translation="MFYELILTRTSNLIQEFISIPHGVTSLDLSLNELGNISNAELIQ
                     AFHYIPDSVISLDLTNNHLCDKSGAELAQLLAAIPANVTSLDLSSNNLDRRSGAELAQ
                     AFAAIPASVTSLNLHCNYLGNNRGVELAQAFAAIPENVTSLDLSMNYFDLESSADLSQ
                     IFTSIPPHVASLNLSFNSLHEVPFEKLALLNDSLKHVQTVYLSFYSVKEMSKEQRRAL
                     GAAFPNAQKIILIDDYGHEIQPSITISNLIRELSGKADAPSLLNQCILFTQRHQKDSD
                     NKIIPKELEESIRTFNSR"
     gene            complement(17402..17881)
                     /locus_tag="JBH85_06115"
     CDS             complement(17402..17881)
                     /locus_tag="JBH85_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HAU0945773.1"
                     /translation="MTGNPMKHRRSETQDIDDAIIKTLNKLLEIELAGVVRYTHYSFM
                     VFGFNRIPICKWMRDQAQESLNHAHLIGELITHFSYHPTLKIGKLLETHEHNISNILE
                     ESLEHERQSLDLYYQLLQYAENKSVLVEEFARQMIQEEEMHLGEISKMLNSPTTFKD"
     gene            17980..>18155
                     /locus_tag="JBH85_06120"
     CDS             17980..>18155
                     /locus_tag="JBH85_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945774.1"
                     /translation="MTSGRLGYIKNWLHKIIIQFYQYIATSIIQGGLMEENYVLFIYY
                     LRINRKHGHNLILM"
BASE COUNT         5838 a         3612 c         3445 g         5260 t
ORIGIN      
        1 aacaatggca ttaaattttc ttaaccgcat tgaacgatgt cttgtacccc aatcaaatcc
       61 tcaaataatg aagcaattat tatcagctct tgggcttgat aagctaacta ctggcaatga
      121 agaatataaa ttttttatcc aaacaattag aaaaaaagcc attgatctga atccgttaat
      181 tcacaagatc aaatcagata ttttaaaaaa tgaatcttta tgtattttgc ttgcctatat
      241 tgaagaaaac gaattaattg atgacgcaga aatcaaaaat gcatctttta cgatacagct
      301 ccaaattaat ttattatgcc ttttagaggc aataaccgtc actatggcca atagtaatga
      361 ttttgctcat gatatttata accatatgat gaagcaaaga ggaaaaggcg ctacaggtaa
      421 tcctttttac aattttttat ttggaatacc ttctcgtgcc accttatttg aaagattaaa
      481 actgatttcc atagatcctg gtttgacaag cattatattt catcgattga tgggtacaaa
      541 tccggaaact caggctgatc tcgatgattt cgtaagtcaa agtcgtttat ctggatggaa
      601 tgctgatgtc gaactggcta attttgatgt tgcatcaacg agcactttac ctgctatggg
      661 agttaacatt ttagaagccg tgtgggaaga ctcaacaggc cataataaaa ataccagtgg
      721 tattttaaat gcacaagctg gcttgggatt aattggtata atggaagaaa aagaatacac
      781 cacttctttt aaattggctg aaactacttt gcctcagggc actagacttc attcagattt
      841 aggttattca ttgatacctg agttaaaagt tgataactca ccaaagaaag tatctcagtt
      901 tcatatcgat gagcgatgga tgaatttata caatagctgg aatttatgtt ttgtgattgc
      961 aaatattgat cctgtattcg taccacttaa attgttaata cccagtgtgt tttcagcaga
     1021 accatccaat tataaagaaa caagagtgct caccttgttt cttgttgcga atctcttctt
     1081 aaaccaacaa actcttaata accctctatt ttccaataat ttttcctttc gaaatggaga
     1141 tgctattatg aaaaaatggg gtgaaatcaa taaaaatcat gccagtgaac tattgcaaca
     1201 atgttgcgcg aaagaataca aagaacctga tactctatat aatagtatac ttggtgagca
     1261 ccctcactta aactttgtgt taaaacttct ctcttatttt caggattcac atcagtttag
     1321 actcactaaa aaagcaaaac aaagtacact gagtgattat ttatttttct caggtaatgc
     1381 cgcatctgcg gataattcag agcaactgaa tttagcctct caaccttctt tgaataaggt
     1441 ataaaaattt tatgctttca tcgcattgaa taggtagttg gaacctgaga ctggttatag
     1501 ctagtctccg ttaaaaaaat ttccttttgg aatcgctcat gaggtaatgt ggctatgaat
     1561 tttaagctgc tgttttcaag atcaaatcag ctttctctgt caggaaatca ttgttgttga
     1621 tttacaaaac tgtcatccag gtctatacca tttaaaaaga gttcaattaa gaaaatttca
     1681 agatgaatat tttatcctgt ttgaaaggct ttattgcaac cgttgattgc aaaagttttt
     1741 caaaggccgc acaaaaatta tatatatccc cctctaaatt aagcaaacaa ataacttggc
     1801 tggaggagga attaaaagtt accttgttga tacgctctac aacacgatta attgtgactg
     1861 aatcaggcca taggttgtat gaaaaggctt tagatctttt cgagcaatta gaggtagtca
     1921 aggtcattgc aacgcccgat cagttcgaat taaatggcat aatcaggctc tatcttactg
     1981 ttactccggc aattccctac ttaacctcat taagtattca atttatgcgt aaatatcccg
     2041 ggattgaaat agattttatt gttggttcgg atacaaaaga gctctactcc tctacctttg
     2101 atctggctat ttcatttgat gatgtcaaac atgcaaaact ggtttgcaaa agattatttt
     2161 caatccagag aaatgtcttt gcttcacctg attatatcac tcaatatggg cttcctcaga
     2221 caatcgacga actaccaaag cataattgtt tgattaacac tctctatggc ctgcaaaata
     2281 aatgggtttt taacaaaaaa atcattcatg tctcgggaaa ttttaaaagc aataatgcgg
     2341 gtgttttaaa acaagctgcg gttgcaggcc taggacttct attggctcct tatttttcag
     2401 tttatgaaga aataaaaaat gaagcattaa ttcaggtact accccataaa tcttcaccag
     2461 atatcaatct ttatgccatt tacccaaagt ctataatgga tgaacaaaaa attaatttac
     2521 ttttgaactt ttttgtgaaa aggccttgtc agaaaacatt gcgacatcct ttattgatga
     2581 aaataattaa agatggatca gtaatttaat ctattttcta ttgcaaattc aaagaattag
     2641 attaatttat ctaagattaa agtggcactt attggaggat aacccctcct tttgagcaaa
     2701 gataaattta atgagagagc caactcaatg ccctcaacaa gaaacattga aacgcataac
     2761 gactccaatc ccacattgcg agcactaagc ctatcagcct tgggcatagt ttacggagat
     2821 attggaacga gccctcttta tacttttaag acggtgatat tgctggctgg agggggaact
     2881 ccagccgtaa acaccattat gggttcggta tcattgatta tatggactct gataatcatc
     2941 gcatctgtta aatacatcca ctttgcttta cggattgaca acgatggtga gggagggatt
     3001 ctcgcgctaa tgtccctttt gagtttaaaa ctgaagcaaa ggcctttcat tatcgcagtt
     3061 ggacttatgg gggctgctct tatctatgga gatggcacaa ttaccccagc catatcggtg
     3121 ctctctgctg tagagggact tgaaatcctt tccccatcac ttaagtatta tgttttgcct
     3181 attgcgataa caattctgat aacacttttt gcgattcaat ctaaaggtac cgcaactatt
     3241 ggaaaggcct ttggcccagt gatggcattt tggtttttaa ccattggtat tttaggggca
     3301 agaggagtta tccaacaccc ttctgtatta gcggcgatta atcccatcta tggcctaagt
     3361 tttttatttt caaatggcgc cacaggattt tttattctat gtggggtctt tctttgcgtc
     3421 actggtgcag aggctttata cgccgacctg ggacattttg gtaccgcccc aattcgctgc
     3481 gcctggtttg gtctggcttt tccaagcctt atctttaact atctgggaca agccgctttg
     3541 gttttggaag gagcatccac ggagcataat attttttata tgctgtgccc gggtgatttt
     3601 ttattaccgt taataattct gtccaccgtc gcaacaatta ttgccagcca agccattatt
     3661 accggagcat tttccatgac aagacaagca atgcaactgg gttggctgcc cagattacga
     3721 gtcacgcaaa cgtcttcaga aggttatggg caaatttata taggagtcgt taactggctt
     3781 ttaatgctgg ctacccttgg gcttactatt ggatttggca gttctgaaaa attagccgct
     3841 gcctatggca ttgctgtttc agctactatg ctttgcacca ctctgctttt atttattgct
     3901 ctgcataaac tatggaaatg ggatattatc acatcagggc ttgttgctgg attattcatg
     3961 attgtcgatg cctctttttt tgcggctaat ctcacgaaat tcatcaatgg cggatatata
     4021 ccaatcacat tggcaatcat aatctattcc atgatgtata tttggcataa aggctatcaa
     4081 accatcgcaa tcaagcaaaa agaaaaaaat ataacagtcg cttcctttct ggacagtatt
     4141 caaaaagaga gggtagtccg tgtgcctaaa actgctgttt ttcttacatc caaagagcag
     4201 gatattcctc caatcctggt ttggcatgtc aagaaaaatc atgtgttgca ggataaggtg
     4261 attattttaa aaattaacaa cttgtccatt ccccggtgta aacctggtga tcgattacaa
     4321 attgtagaaa caggaacagg catctggcat gccgtagcaa attatggctt tatggaacaa
     4381 cctcatattc caaaattatt aaagaaatta gaggctcaag gctatgacat caatatcaaa
     4441 gacataacct attatatcgg tcatgaaaca atatttgtcc gcaatgtccg tcatactctg
     4501 tcaaaataca ttaaaattct cttcgttttt atgcatcgca atgcccttcc catgagtaac
     4561 tactttcatc ttccgccaga atcagtattt gaaataggac gacagataga aatttagtga
     4621 aaataattga tcccacacat ggaaaactct gtgggtgagt gctgttttat ggtcaggatt
     4681 gaattttgca cctggtctta tagcacatat gacaaatcaa gattaaatcc tggcttttgc
     4741 tcttttgcag attataccca ggtcccctga aaaagattat aaacatacca aaaaagtgac
     4801 ctataattat aaaacaaata ctttggatga tagaaatggt tcaatttgcc aaaccatcta
     4861 ttggccctcc ggctgattgt ggacgaataa atctcttaat tggacgtgag ttagggcaat
     4921 atcaaaatat catacaaaaa tggattgcta atctcgaaga caacgcgaaa caaagacctt
     4981 ctaatatttc tgaatttaaa tttggaaaaa ctttaggata tcttttactt caaagcttaa
     5041 agaaagcaaa tttacatcca gacaacttca gatcttttgg tttcgaccct tgggaagaac
     5101 ctcattatca atcggcacta atcgctggaa aatatgtgat aactcaagat acgtaccgaa
     5161 tttactttga tataccaaaa attgatcatt cagatgagga aaaaataaag gctaatcaag
     5221 accatgcgca gatactttat ttcacaacta tgaccaatga tggccttatg gtttttacct
     5281 ttgaagataa agtagaaaat atcaattcca gattatttgt agaactagca aaaaacataa
     5341 agataaactc agaagcatgg agtcaattaa tacagtttac agaaaaaaat cttttatatg
     5401 aacaagatga tatttcatca aaattgccgc aagtatttgg tttgatatta tatgcaagca
     5461 tatctccaga acacagggaa gatgttttta ataacctttg cccattactc ttaaaatcaa
     5521 aaaactttga atcagaacat gttcccgaat ttcgttcaat tactacaaga ctgcttaaag
     5581 atattattcc tgattatgaa gccaaagtga tggccttcct gcataaaaac aacaatccaa
     5641 tgcgttatag cgaaagggac attagtgagc aaggagctct tttaggtctt tcagatgaaa
     5701 aaattgacgt agtacaaaac gaaatgagag aacgtaaagc attagaagta caaaacaaca
     5761 atcgatcaca agccattgaa ctaaaaaaaa ctctcattgg tgccgtagat gaatacctta
     5821 gatggcgcaa taatgaaagc aaagaaacgg attatcaaaa aagctcaggt gcttttacct
     5881 ggctgcgtca ttacacagat tttggcaaaa accgagccaa tgatttaaaa aatgagctta
     5941 ataaagcaca agatttaaag accatgcttg atgttttaca aaaacatttc gcaaataact
     6001 cccgattaca taatcattct cttgatagtt atctattaag agcagtatac aaagatttta
     6061 ataaattcaa ctcaatattt aattttgaac atcttgcaat taaaaatgat accgatgcta
     6121 accgtgaatg gctaagagaa gaaatgttgg ggatggtagc aaaaacgaac atgaatgtta
     6181 cattagaaaa gtcaataaat agcagacaag agagccccac tctgcctaat aaaacaaaag
     6241 tacatatcag tatcatgaag attcctgcta atgaacggga ggaaaatatt ttggcggtcc
     6301 acaccgcgtt aagaaatgat gaattgctga gaaatcaaga tggatccgtt cctgctatca
     6361 taaaggaaat acgagatatt gtagggaaaa tcgacccttc agaagaagaa aacatagcca
     6421 atgcgattat tgaaatcaaa agaacaatag cagacaacag cgacaataat tacaacgaga
     6481 atgcgcatga catcatcaaa gcatttgaga atccaagttg ttgtgatttt agaaaaatcc
     6541 gcgctgcctt aacaaccaac catgcaatcg atgaaataat gaatccggtc agagtaggaa
     6601 tgcagttgaa ctaattcaag ctatttttct acccctcagt tacgctccga ccaaaacgga
     6661 gttgttcgga ttgattaaaa gtttgcttaa ctcggaaaca gccatgattc gaaatagggt
     6721 tattttgtcc aacatagcct gtttggtgga ttgtttatgg tttgccatat caatgcagga
     6781 agaaatactc attatggtga taatatcctt tggcagattg gttataagcc catcctctct
     6841 agtcaggtaa taaccaagac agtacacatt tccatgattt taaggtatgg ttattcactt
     6901 acctaatatg aaaaacatac attacaaggg ctgtgatcaa tgaccatcta ctttttgttt
     6961 ggcaaaactg gctcgggcaa aagttatatt ggagagctgc tcagacagct aagcatcgtc
     7021 catatcgatg gtgataacca catcacccaa aaaatgcgtg actgtctaat cgaagatgaa
     7081 caaatgactc ctgagatgat tgatgaattt gtcgatgtct tgattgatgt tatcaagaca
     7141 caaaaaacta aaacaccgaa cgagagtttt gttatttcac aagccatgta tctcgacaag
     7201 caccgtctca agctattaaa cgccataccc gagctcgaat ttgtaatgat tgatgtcatt
     7261 cctgtactgc gggcaagccg catcaccaat cgatttcgca accaggaaag caaagtaagc
     7321 ctgcgctatg ccaccaggat ggatgcattt tttgagtatc cttcacatga aacaatacgg
     7381 cttgaaaaca atcaaagctc agatgaaacg cttatagagc aaatccgtga aaaaatgccg
     7441 gcactgttta acatggaatc aaaagaagaa ttaaactcag gcatacagct tcagtttgca
     7501 tagcttgaga gccatatcca gatattgttg aaataacgaa cgcatgcagc aaccgtcttg
     7561 aagccagaac ttaagaaggt tgccacttgc tagttgagat tagagaattt gagcctttta
     7621 aaaaagatac tgtaaaccaa gagcgacagt atagtgttta ttggatagcc ctgctgaatc
     7681 accaaaataa ctgcgctcac ccgtgtcatt gtcaatgatt tcagtatccg ctctcccatt
     7741 aggataatga ttgtaagaag cctcaacaaa aattttcgta ttaggtttca aaaagtagcc
     7801 agaatgaatc gttgccgcat aatatctgga gctatttccc cgctcattga atgttaagtt
     7861 acgggcataa tgctcatcat gatctcgagc tgaaacccaa tcactaaatt ttaaaacacc
     7921 actaaactca aaattattaa taaaatacct ccctgccaaa ccaacataag gagttctaaa
     7981 tttttgttgg tatcctattc caggttgatc tcctggaaaa caaccggcat agagccctcc
     8041 gttatattgg taacaacctc cggtagcttt ccagtcaaag gaattccatt gataaccagt
     8101 agccaggcct aacttgtaat tttgtttttg catcaaccaa gcccttaagc tcatatctaa
     8161 ctcatttgca taattgagat gcgtatcttc atgatgagac cagtgagtcc aggtatcttg
     8221 ataaggattg agccaatcat aatcatccat agcagcttta ttttttacca aagttgtcca
     8281 gccttgacca ttcatgctaa gccaatccag gacatcataa tttaattccc cttttattat
     8341 cggagcattt tttatgcgcc aatccagctg gcttaactta gtgtctgtct ctggatggta
     8401 aacatattca tgagctttac ctgacagaat gcctagagaa gcacttaatg acaaaccatt
     8461 aaattcgtaa tccgcagcat aagtagagaa tgagaaaaga aaggataaag agactggagc
     8521 caacaaaact attttatttt tcatattttt tcctagttaa ggctggcaat ccttgcagca
     8581 aagtgacttt aaaaaaccaa tcgcattatt gtgatccaaa atgatcttgt caagatcaac
     8641 attgaataat attaatcatt aaggattcta atcaagcaat gtcatatcgc tcaattgaga
     8701 aagcaggagc agttatagta gtgcgtgtat tttgggcaac catgttttga gtgtgggcac
     8761 tgggctttct ggacaatagg gcaaaaccaa atacaagcaa gctgaaaact aataaataca
     8821 acaaatccca atactgggga aggatatgct taccaccata attaccaaga aatgagaaaa
     8881 taccaagtcc aaaaagatag aatataaacc acagtgcttg tttgctatca atctcccgat
     8941 gtgtattttt cataagacaa tagaggaaag aacaaactac tcccagaata gtgatcacca
     9001 ataactttcg tacgctatgg aaacctgccc aataaacacc gactgtacaa acataaaatc
     9061 cgagaaagcc aataaggtta ctcccctgca aacgaaaagg acgcttatag tgcggtaatt
     9121 gctgacgtaa gcaaaccagt gctacaggcc ctatggaata gctaatcatt aatattgcca
     9181 caagaaaagc tgacatttct tgccatccgt gcaacacgag cgacatggtg gcagcgagta
     9241 agaaatttac gcctaaacta acccaaggaa cttgatacct gttttgtttt gtaagaatta
     9301 caggtgtagg aacaactgag cccatactac ttagcatgtg agctgctgtg gttgaataaa
     9361 caagaccagt ggaataaggt gatataaaag catcggcgta caataaaata ctcaaccaaa
     9421 gcataccggc cagtgcagcg agagcagcaa atggtcctgc atcaccagta aaagacaaat
     9481 tcacccaccc tttttccagc gcttgttcgc taacactccc aataaaggac cattgcaaac
     9541 cagtgtaaag cagtgtcacg aacactaatg aaccacccaa aatcagaggt atgtattgtc
     9601 ctggtttctc caattcaccc atcatgataa ccacttgtcg aaaccctaaa agtgaaaaaa
     9661 gcacacctcc gcttgacatt gctgccataa cgccctgcca gccataaggc ataaaaccac
     9721 cgtgctgaaa aaaattaccc gggtgataac tcatggttac caagcttgcg atagtaagaa
     9781 tagggattat tatcttccag atagtaaatg cggcattaat gcgggcaaac aaaccaatac
     9841 caaaataatt aaacaaaata aaactcatta atacaagcag cgacaacata taacctgttg
     9901 gcgtatttcg atagtgcaaa gcgtcatgag ataccagatc tggaatgtaa ttactagcat
     9961 attgaatgac accttgcgtt tcaatcactg gcaaaatggc cagggaaaac caagtcatga
    10021 cattcatgat aatgccagtc aaacgtccat gggtatataa aggcaagcaa gccaggctgt
    10081 cggactgtgg aaacatcgta cctaattcag cgtaagataa agcaacaaac agaagtaaaa
    10141 aacctgccag tggccaagcg ataatggcag caggaccagc aaaatgagca gaatataaag
    10201 aaccaaataa ccagcctgag cctaccatgc tggtaattga aatccaaagt aaactcaaag
    10261 cacttaaatt tttattcatc tgattttcac atgtccttat gattttgatg caggcaaaca
    10321 attcaccagt cagcagagcg aaatcattat atttttgcat tgtaaacaga aatatcatga
    10381 ctaccaaccc tataagagtc aagtttaacc aggtatgtta taaatacctt cctgcatcag
    10441 gaaaaatgaa aaacaagaac ttgcagcagt gattttcttt gctatggatt cagcattttt
    10501 cactctgcaa tctctcgctt gatagtatcc ttgcttcgat tgcttagctg ccctccctta
    10561 agctatagtt aggtctctag tgaattatga tctgcgacca ggagtgtcta tggatggaaa
    10621 agttgggagt acaacaaccg ggtgtccggt gatacatggc ggtatgacgt ctacaggaac
    10681 atccaacacg gcatggtggc caaatgcctt gaacctggat atattgcatc agcatgacac
    10741 caagacaaat ccaatggaaa aagatttcaa ctaccgtgaa gaagtcaaaa aactggattt
    10801 tgaggcactc aaaaaagatt tgcatgcttt aatgactgac agtcaggcgt ggtggcctgc
    10861 tgattgggga cactacggtg gtctaatgat tcgcatgtcc tggcatgctg ctggttccta
    10921 tcgcgtggct gatgggcgtg gcggtgcagg tactggcaat cagcgtttcg ctccattgaa
    10981 ttcctggcct gacaatgtga acctggataa agcacgtcgc ttgttatggc cgatcaagaa
    11041 aaaatacggc aacaaaatca gttgggcaga cttgattgtc ctggccggta ctatcgctta
    11101 tgagtcaatg ggacttaaaa cattcggttt tggttttggc cgtgaagaca tttggcatcc
    11161 tgaaaaagat gtttactggg gttcagaaca agaatggttg ggcgccaagc gttacgatgg
    11221 caaaagccgc gagtctctgg aaaacccgct ggcggcagta caaatgggat taatttatgt
    11281 aaatcccgaa ggagtgaatg gacaacctga tccgcttcgc acagcgcagg atgttcgtgt
    11341 aaccttcgga cggatggcaa tgaacgacga ggaaaccgtt gctctgactg ccggaggaca
    11401 tactgttggc aaatgtcatg gcaatggcaa tgcaaaactt ttgggcccca atcctgaagc
    11461 cgctaatgtt gaggaccaag ggcttggctg gattaacaaa accaccagag gcataggccg
    11521 taatactgtt tcaagcggca ttgaaggcgc atggacaaca caccctaccc agtgggacaa
    11581 tggctacttc tatttattgc tgaattacga ttgggaactg aaaaaaagcc ccgccggtgc
    11641 ctggcaatgg gagcccatcc atattaagga agaagataaa ccagtagatg ttgaagaccc
    11701 tgccatccgg cacaacccga tcatgactga tgctgacatg gcaatgaaaa tggatcccgt
    11761 ttatcgtaaa attgcagagc gcttttacca agatcccgac tattttgcag aagttttcgc
    11821 tcgagcctgg ttcaaactga ctcatcgcga tatggggccg aagacgcgct acattggccc
    11881 tgatgttcct aaagaagatt taatttggca agatccggtg cctgctggta acagggcata
    11941 tgatattgct gccgccaaag caaaaattgc ggccagcaat ctgaccatcg gtgaaatggt
    12001 ttctactgca tgggacagcg cgcgcacttt ccgcggctca gataagcgcg gtggtgcgaa
    12061 cggagcacgt atacgactaa agccacaaaa agactgggaa ggcaatgagc cacaacgcct
    12121 gactaaagtc ttgcaaattc ttgaagacat cgctactgat acaggcgcaa gcgtggcaga
    12181 tgtgattata cttgccggaa atgtcggtat cgagaaggct gccaaggcag ctggctttga
    12241 cattatcgtt ccctttgctc ctggccgtgg ggatgcaacc gatgacatga cggatgcaga
    12301 atcctttgac gttctggaac cgcttcatga tggctatcgc aactggctta agaagacata
    12361 tgatgtccgt cctgaagagc tcatgctaga tcgcactcag ctcatgggac tgacagccca
    12421 tgagatgaca gtccttgttg ggggtctgcg cgtgttgggt actaatcaca acaataccca
    12481 atatggcgta ttcactgatc gcgttggtgc cctgactaat gacttttttg tcaacttgac
    12541 cgatatggcc aatgtatgga taccaagcaa agacaatttg tacgaaattc gagaccgtaa
    12601 agcgggtaac atcaagtgga cagcgactcg tgtagatctg gtttttggct ctaattcgat
    12661 tctgcgctcc tatgctgaag tctatgccca ggatgataac aagggaaaat tcatacagga
    12721 ctttgttgca gcatggacaa aggttatgaa tgctgatcgc tttgatttgg cataatcctt
    12781 tgcaagttgt cataccatag ataatcatag tagaaatagt tccgattatg tttagctttg
    12841 attgcctttc atcgcatcaa aactaaacat agcgtactac cataaaatgt tgtttcaaaa
    12901 gcgaacattt atgatggttt gcattaggcc tgattaacct aacttgtctc ttttgtttta
    12961 tttctgcgtt gcaaacgttt ctgtaagtct catctactgc atgtaaaccc caatcttcaa
    13021 aacgcttgcg ccctgcccta aaacaaaatg atcagatcat gcaagaggtc tatttatatt
    13081 atgtctcagc acaaacgaca tgcttcagca tttatatcac tgatgggttg agttactctt
    13141 gggatgaaaa ttgttaagaa ccatatggat taacaaatta acatcacgga tattaaaagt
    13201 ttcatccata tccagaatat tattatcttg aaaaattatg tgatttccat caaattttac
    13261 tttaattctt cggtgcctgt tttcaccttc ttcaacttca ggtatttcta tttcaattct
    13321 tttgctaaat ggattaccgt ccagatcaat atcttcttta tagtaagtga taatttttga
    13381 ttgtttttca taataatcga gcggtctctc tgaagcaaat ccccaaggaa tagggtagtg
    13441 agattcggta ataatttctg tatcaatacc gtctatctct ttttttccac ataaatatat
    13501 tggctggatt tttgtgttag atcactgttt ttcgtaccat aaactaataa attaattcgt
    13561 gcttttttct tgaatcaacc acagggcagg aagagtcaac aaagccatca ccatcaaata
    13621 aatagaaaat gcaaaatgga tgaaagcata acttaatagc aaaataatga gtggtgctgt
    13681 gcctccaaat agggaattag acaagttaaa aaataaagta aagccactgg cccgctcttc
    13741 ctgtggtaat tgttcaaggc tggcggtaaa tgcacttcca ataaaaaaag agataatgac
    13801 agccaaaaca ctgcaggcga cagtaatttg taataaagta cctgtattga tcaaataatt
    13861 tattaccaaa accgtacata aagttgcaat taaactcacc gccaagggaa agcgtctgcc
    13921 taaaatatca gaggtgaaac ctgataataa gagacccatg ctataacaaa tcatccctat
    13981 gataataaca tccatcgctg tagttaatgg caactcctgc tgttgcaggt atgaaggcat
    14041 ataaacaaaa aatgtataaa agctactgtt gcaataaatt gccaaaagaa aaatagcagc
    14101 aattgctttt ttccgataat gccaggcatt taatatggga tgagattgtc tttgagcaac
    14161 tacttttgca aaatcggtta attctctggt ttgacttcgc aaataaagtc cggcaaaacc
    14221 tacgaatatt cctattaaaa atgggaagcg ccagaaggaa tcgagatgct gtttggaaaa
    14281 aaacagcatg gttattttgc tgactattat tgcaagcaac agcccacaaa tcgaacccaa
    14341 ggtgacaaag ctgactgcta aacctttatg gcgcatgctc acattttcat aaatgtaaat
    14401 actggctaag gtcatttccc ctgccacaga aaccccttga gttaatcgac agaacgtgag
    14461 caaaattgga gcaaaaatac cggcttcttg gtaagtaggt aataaaccaa taaaacctga
    14521 tgaaaaagtc atgaccataa gagttatggt caatgttttt ttgcgaccaa tttggtcacc
    14581 cagattccct aaccaataag cagagaatgg ccgaacaagg aaacctgccg cgaaaatacc
    14641 aaatgttgcg atgagagcag tgtgtttatc ggtagtgggg aaaaaaagcg gcgccaaaat
    14701 aggcgccata aacccataaa tggcatagtc gtacatttca aacaaggtac caaaagaggc
    14761 tgccgcaata atccttttat ccatatccaa tctgttgttt ttgttttacg ggtaagtggt
    14821 acagcctact ttaactcaat tgatttctgc tcttgcttct ctgtctccac ctcctctatg
    14881 acaggtgtac tacgactaaa gaaaccagct atactaggtc ttgatggtaa cacagacaca
    14941 atcaattgtc ttagtgaaac tgtttcagac tcaagaggtc tgggtaattc gtcaagagaa
    15001 agtttttgcg ggtgacttgc aatatagtca ttactgtctt cgaggtattt acaaataaat
    15061 gattcataaa cccccagacc tgtatcatac tttagcaaat acaaatcagc caaatgcgtg
    15121 tccagttgtc catcactgtt tctgccatat ttggtctcaa gaaatgttat tccttgttcg
    15181 cttaatgagg cccaatgcca ctgtttatag atatctcttt taatacgata ctcttcagga
    15241 cagggatcaa cgaaatgttc aagttgagaa ttggattcaa tgctttctgc aagcgttgca
    15301 tgccctgccc ctaaggtaag atcacctgta tgattgacat gaatttggta gggtgtgtcc
    15361 tggccatagc cctctcctgg acgaatatcc caacccgtgt aacgaagcag aggacgaact
    15421 gtataacgca gagtagagaa cgcacccaga tttccttcta cagcagcttg aaaagtggaa
    15481 aaggtattat tcagaatgca tcttactgtt acattggatt gcagtttgaa ttgatcactg
    15541 actttttttg ccactgcagc accaaaggag tcgccttgaa aaaggatatc atcaattgat
    15601 atgccttttt caagcaaggt attggccagc gctattccag tgttaaccat atcattgact
    15661 tctaacactt caccgcccag ttttctcatg cccgggtatt caaaggcgta ataatgcgct
    15721 cccgttattt gaacagcttt tgctatatca atcaggcaat cttgatattg tgttcctatt
    15781 ccagtgaaat aaatcacatg ttttcccttc ccgacagctt tgaacttctc attaggtgtg
    15841 gagcttgatt gattagaatt attctgaaag cctatcacct cggtcataca ggttttttgg
    15901 ttggctaaag tcacctcgat ttcaaagcgc tgaaagtcta taccggataa ttgttcatgg
    15961 tagggagaat cctcttgacg tattgcttct acaaaagagg caaaacgttc ttcaagtgac
    16021 atctctgaat taccgaaacc atttttgaca taccagtcct ctctattggg aggaaaggtt
    16081 cttaaagcta tttgtctttg caaccagatt tgtatacttg aattcggcat aacaccccct
    16141 tttttttgat caataagtgt gcatacaatt tgctaatgag tcaacatttc tttgcgcatc
    16201 tttattagag ataattctta ttttcagcac agcaccgatt tgcacccgat tgcaacaaaa
    16261 caaactcact ttaaccctgc gcttataaga aatttgtata gacaatatac aaacgattga
    16321 tttcaataat gaacaactgg ttgatattat cctcgttttg atcaaaacat aatctatgta
    16381 tttgggagat tttcaccatg ttttacgaat taatattaac cagaaccagc aacctgatac
    16441 aagaatttat ctctattcct catggcgtta cttctcttga cttgagttta aatgaattag
    16501 gcaatataag taatgctgaa ttaattcagg cctttcatta tatacctgac agcgttatat
    16561 cgttggattt gactaacaat cacttatgcg acaaaagtgg tgcagaattg gcacaactcc
    16621 tggccgccat ccctgccaat gtcacttctc ttgatttaag ctctaataat ctcgacagaa
    16681 gaagtggtgc tgagttagca caagcctttg ctgctatccc agccagtgta acttcgctta
    16741 atttgcattg taattacctg ggcaataacc gtggagtgga gttagcacaa gcctttgcgg
    16801 ccatccccga aaatgtgacc tcactggatt taagtatgaa ctatttcgac ctggaaagta
    16861 gtgctgactt atcacaaatt tttaccagta tccctcctca cgtggcgtca cttaatttga
    16921 gctttaactc cttgcatgaa gtaccctttg aaaagctggc actccttaat gattcgctaa
    16981 agcatgtgca aactgtttac ttgagctttt atagtgtcaa agaaatgtcc aaagaacaac
    17041 gaagagcact gggcgctgca tttcccaatg cgcaaaaaat cattttgatt gatgattatg
    17101 gccatgaaat tcaaccgtct ataacaattt ctaacctgat tagggagctt tctggaaagg
    17161 cagatgctcc atccttgtta aatcaatgta ttctttttac ccaaagacat caaaaagaca
    17221 gtgataacaa gatcatccct aaggaattag aagagagcat tcgaactttt aactctcgct
    17281 gattgataat cttgagcaac cgtcgttcgc tcttgtcaat gaattaaaaa ataccaaaaa
    17341 cttgtttgac tcttcgagtc aaacaagaaa tggaataatc gacaaagaga aacaactctt
    17401 gctaatcttt gaaagttgtc ggggaattaa gcattttgga tatttctcca agatgcattt
    17461 cttcttcttg aatcatttgt cttgcaaatt cttcaactaa caccgactta ttttctgcat
    17521 attgtaatag ttgataatac aaatccagac tttgcctttc atgctcaagc gactcttcta
    17581 aaatattact gatattatgc tcatgagtct ctaataactt accgatttta agtgtaggat
    17641 gataggaaaa atgggtaatg agctcaccga ttagatgagc gtggttcaaa ctttcttgag
    17701 cctgatctcg catccatttg cagatcggga tgcgattaaa tccaaagacc ataaaggagt
    17761 aatgagtata gcgcacaaca cccgctagct cgatttccaa taatttattt agagttttta
    17821 tgatggcatc atcaatgtct tgagtttcag atcttctatg tttcatagga ttacctgtca
    17881 ttttacttat ctaagtatag aataatttca agaaaatctc gaagcgttat cagttattga
    17941 gaattgcctc tcatatctaa cataagccct gatacaaaga tgacatctgg caggcttgga
    18001 tacataaaaa actggctaca caaaataatt attcaatttt accaatatat tgccacttct
    18061 atcattcaag gcggcttgat ggaagaaaat tatgttcttt ttatttacta cttaaggatt
    18121 aatagaaaac atgggcataa cctgatctta atgat
//
LOCUS       DACVWI010000048        18151 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.048, whole genome shotgun sequence.
ACCESSION   DACVWI010000048 DACVWI010000000
VERSION     DACVWI010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 18151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18151
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.048"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(33..1154)
                     /locus_tag="JBH85_06125"
     CDS             complement(33..1154)
                     /locus_tag="JBH85_06125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HAU0945775.1"
                     /translation="MDITPFFKLMVDKGASDLFFSVGAPPNIKIEGITSPIGQVPIKS
                     NQMAEIVLSIMNDAQQKEFESKMELNMAFSLAGVGRFRINLFRQRGEVAMVVRYIKGE
                     IPSIEDLNLPQILKSLVLELRGLVLVVGSTGSGKSTTLAAMINHRNENHRGHILTIED
                     PIEYIHQHKKSIVDQREIGIDTLSYDNALKNAMREAPDVILIGEIRDLNSMKHAIAYA
                     ETGHLCISTLHANNANQALDRVINFFPDEARQQILLDLSLNLKAIISLRLIPGVDNQR
                     VAAVEILINSPYISDLIEKGKIDDIKEVMARSAEQGMQTFDQALFNLYKEGKITKENA
                     IKYADSKNNVGLQIRLGEEKSFNIQDENLQIQPDDIDNV"
     gene            complement(1244..3172)
                     /locus_tag="JBH85_06130"
     CDS             complement(1244..3172)
                     /locus_tag="JBH85_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-gulono-gamma-lactone oxidase"
                     /protein_id="HAU0945776.1"
                     /translation="MALPTELKSKFIQILNQNKISHSVGWSNYMESVNNPAAIVVEVK
                     NEKEVQTVMKAIKELNSDREPKDKVTVRATAGWTDKPGKSCCFFPWSEAQESQYNEGF
                     SFSQVVGGKASPDTAGTDVIIRFAKKFHHAKVIGPLKNPPVFNPDNPIHRLPMTLVEV
                     SAGMQVADFADFLREHQLSLSTVSMISWVTPVGLAGTAGHGTGRDEPAFSGLIESVTV
                     CDMDGNLREINSDHPDFKDLTGGHSGLLGIVVSMKLRAVKAFNLCETIELFPNTREMT
                     GRLSDILKNNQYISIMGMPSYGCPESDKLVSKWQIRQWNYTTDKPGKKEKAPYDPDVR
                     SFAQELQVRIGASVMDFLLDSGLKHLLPSFMLLSAAVVTGTRGTSPKVDYENHITHPQ
                     VAFPKEMRDVSYLIPVKDDEAGQKLELILQKMEAMLNEAGSMGEFPVTYAIYVRYLKG
                     TNGGLSTSFTSSDDERILAIDVVTHPEAPGITNFEKGFMSFLKEMNIIPRNHLGKNFP
                     AGVVHYDQFLGAERVSKYKQALERFYCSPGKNDGAERLSMSPFYTPYLQGMLSASAPT
                     NQLVDQNKYEQRIEKLHEEHSDLECAEFLSKLYAEVSRMSTFSEEALTAKKGFLEACK
                     AELEHRNSRLEAPVPLLS"
     gene            complement(3460..4260)
                     /locus_tag="JBH85_06135"
     CDS             complement(3460..4260)
                     /locus_tag="JBH85_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase"
                     /protein_id="HAU0945777.1"
                     /translation="MNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRA
                     KIASRPDDPGYFVEDFCTWQNNPFYQRIIFGTNLGVAAAQIMQSQSVRLYHDHLLVKE
                     PGTRQVTPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFIAGSHLGPWLMPRTFLD
                     NQAKWFPEGSLQELPPIEEARARYPIIGWEIEPGDVVCFHMLTLHMARGVEGRHRRRV
                     FSVRFLGDDITHAPRAWPTSPDFPGLTAEIPAGASMDHPLFPCLPLKI"
     gene            complement(4293..5645)
                     /gene="radA"
                     /locus_tag="JBH85_06140"
     CDS             complement(4293..5645)
                     /gene="radA"
                     /locus_tag="JBH85_06140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HAU0945778.1"
                     /translation="MKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIMPENKTL
                     RSGQWANQRSVITAVEDVVMDKIVRMDCGISELNRVLGGGLVYGSVVLIGGDPGIGKS
                     TLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQAQ
                     KEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEG
                     TLAGPRVLEHMVDSVLYFEGQNDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANP
                     SAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQAKRVTAGLEHNRLAIL
                     LAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGE
                     VGLAGEIRPVQSGQERIKEAIKHGFKRAIVPFANAPKQQIDSMTVEPVKHLRDVLEKM
                     "
     gene            5880..6773
                     /locus_tag="JBH85_06145"
     CDS             5880..6773
                     /locus_tag="JBH85_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2327 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945779.1"
                     /translation="MAKFTVGQDPVKGLTELKAYMEEQISKIKKATSEQEIDQLLVEV
                     LNEYDDKMGSLSKIYKGGNEQVEQLKIDVRKLYEPLRDQFSYNHPQTLVGEFQTKLEE
                     QHKRAEEEKRKLEKQREEQLKLEKQLEEEKQKLAKQSEVEEKPKLENQQEENITQALQ
                     KVDGIIQELTLKIDRVDQHQYKKAHDTANTLLQSLIAARDEYERDLRANEFSQELAGR
                     KFKLACQDAVKIAKPVLEKDLGWGDYLKNLLKCLGNAVITVFTFGYQQGFFAYARPDS
                     AKAVEKAEEDLGLRQAASSPK"
     gene            7037..7420
                     /gene="lem22"
                     /locus_tag="JBH85_06150"
     CDS             7037..7420
                     /gene="lem22"
                     /locus_tag="JBH85_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem22"
                     /protein_id="HAU0945780.1"
                     /translation="MPAFKKGQNPVTELTRLKEYMEDQIAKAKESSSLTAQLKFLENA
                     HTEHFVKMGSLTTIYKGGSEVVDRLKIEIRSLYEEMLELKDKCRDQIQQYETSIKNSP
                     TFFTTRNSKTKDEEFDLDFDKAFGL"
     gene            7614..7844
                     /locus_tag="JBH85_06155"
     CDS             7614..7844
                     /locus_tag="JBH85_06155"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HAU0945781.1"
                     /translation="MSKGIHFEQSITELEEIVRQLEKGELSLEESLKQFEKGISLARR
                     CQNALNQAEQKIETLTGTDSNIELDSDEQTSD"
     gene            7792..8721
                     /locus_tag="JBH85_06160"
     CDS             7792..8721
                     /locus_tag="JBH85_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HAU0945782.1"
                     /translation="MVLIPTLNSTQMNKQVIDKYTQRHELYLEQLLNEIIIPAPQIRS
                     ALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDND
                     DLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASG
                     ISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSA
                     LRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAV
                     HYQIAMDSLRLFGSKAAALIELTKQLQNRSNLS"
     gene            complement(8765..9769)
                     /gene="bioC"
                     /locus_tag="JBH85_06165"
     CDS             complement(8765..9769)
                     /gene="bioC"
                     /locus_tag="JBH85_06165"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HAU0945783.1"
                     /translation="MQLEQTASWLLWNWLQRVHIEGKRKFCVILNNFWSTIVGFPAFN
                     FSLVFIMTVNNEISKAFSKHADDYERVAKVQKEIGSRLFERLQYLKIAPRRILDLGCG
                     PGFFSKELALLYPKAQIVGMDLSFAMLEQARKKQGWRRKWPLVSADMQKMPFATGAFD
                     LVFANQVIHWSSSLGMVFRELNRVMNVNGCLMFTTLGPDTFKELQTAWSAANQYAHVN
                     EFVDMHDIGDCLIAEHFMDPVIDMELLSIHYETLPQLLLALKTQGVRNINPKRNHGLT
                     GKSAWKQFEAQYATMRTTTGKYPLTYEVVYGQAWKGAQRKMEQGIETWIPVSRVVKKS
                     "
     gene            9768..10367
                     /locus_tag="JBH85_06170"
     CDS             9768..10367
                     /locus_tag="JBH85_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HAU0945784.1"
                     /translation="MEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYR
                     FEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKNALKPDCLIPVPMHPKRLKRRGFN
                     QAGVLTRLLARQLNIPYDLYYCQKIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVM
                     IVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN"
     gene            complement(10396..11487)
                     /locus_tag="JBH85_06175"
     CDS             complement(10396..11487)
                     /locus_tag="JBH85_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HAU0945785.1"
                     /translation="MDKESIMIMALVAIILTLILVIGIHELGHALAARLFQVKISKIS
                     IGFGKPLIQWQTQSGCNWIWAMWPLGGYVQLLNSRISPVKPQENAYCFDKKPIWIRVL
                     ILLSGAIANLITAWIALVLVFYIGISYKQPQIQSVKLDSLAAKAGIQAGDQWVAIENY
                     PTDSWQGVGMQLVIHWGQKDVHIVLRQGNQQLKQLNLDLSQIEFTSKDGSLLESLGIK
                     PDLSAVSSLTRYPSLLASMQKAFAEIIHTMYFFIMILKQLFLGVIPFSILLGPLAIFS
                     VSVASLTQGVIVFLLFIATLSLAVALVNLFPIPGLDGGSILYSFIEKIRGKPVSVAVE
                     VLLHRLMIILFCVLLVHLLMNDLNRYLHH"
     gene            complement(11526..11804)
                     /locus_tag="JBH85_06180"
     CDS             complement(11526..11804)
                     /locus_tag="JBH85_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HAU0945786.1"
                     /translation="MDIILQGQHNAIETVESLERVLKLFKERYQVDGFREIHLTVTLV
                     DEQGDEVELVDSDTNQPYRIFEVYRKGYELAGRKGIPMLQLVVDNTHK"
     gene            12014..13396
                     /locus_tag="JBH85_06185"
     CDS             12014..13396
                     /locus_tag="JBH85_06185"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HAU0945787.1"
                     /translation="MIARNRNTRNLVFFSTNFTMNRLQFVNSLKQINQDSMVFVACGL
                     NHKTAPIHVREKVALQPAMQDSLLSSLLDLPEVNEAAILSTCNRTEIYCDTNTPEVLG
                     NWLAHEHQLSEELLSQFLYIHQGKEGIKHTLRVASGLDSMMIGEPQILGQMKQAYQHA
                     CRLGTVKTQLRPVFEYIFRASKRIRTRSGIGANPVSIAYAAVQLIGQLFKNYHSLSVF
                     LIGSGETASLVAKYLHQHGVHRFLIASRTLENAQKLAETFGGKTLSIGDIPQYLPLAD
                     VVISATACPLPFINKSLVEHALEQRNHAPMFLLDLAVPRDIEGNVNELEQVHLYNVDD
                     LQSMIEKGMDERRNAALQAEQLIESELDNYIRWHRSLRAKDVICDYRNQMHTLAQQEL
                     QRALKKISAGQNQQDVLNEFSMRLVNKLTHNPTIGLRQIAWDNREDLLDLARYLFDTT
                     ANQSLYEEIS"
     gene            13380..14468
                     /gene="prfA"
                     /locus_tag="JBH85_06190"
     CDS             13380..14468
                     /gene="prfA"
                     /locus_tag="JBH85_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HAU0945788.1"
                     /translation="MKKSLELKLQQMLERYEEVGRLLSEASIIADQNQFKSLSKEYAQ
                     LEPVSQCYESYLEAKNNLDSLNELLESDDKDLATMAEEEIDTVKKQIEELDEQLQWHL
                     IPKDPDDERNIYLEVRAGTGGDEAAIFAGDLFRMYSRYAESQGWQIELISASHGEHGG
                     YKEIIAKISGQAVYSQLKFESGAHRVQRVPETESQGRVHTSACTVAIMPEVDEINDIQ
                     INPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLL
                     KTRLLDAEVSKQKQEQAQTRKSLVGTGDRSERIRTYNFPQGRLTDHRINLTIYQLSDI
                     MEGNLSLVIDPLKREYHAELLADLGRHD"
     gene            14461..15324
                     /gene="prmC"
                     /locus_tag="JBH85_06195"
     CDS             14461..15324
                     /gene="prmC"
                     /locus_tag="JBH85_06195"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HAU0945789.1"
                     /translation="MIDIRSLLEQALQQFKVKNQETKLEAELLLCHVLNKNRAYLFAH
                     PDALVSPEQIETYLQMIKQRAEGLPIAYITGQREFWSLSLKVTPNVLIPRHETERLVE
                     LALELIPDKENVSVLDLGTGSGAIALALAKERPLWHIDACDFSKEALELARYNAKTLG
                     LNNINFCHSYWFNNLPLKQYHAIVSNPPYIAENDPHLKHGDVRFEPTSALVSSQDGLA
                     DLQYIIQHSYEYLLPDGLLLVEHGFEQKNEISAILNQLGYKNIHCWQDLQGHDRVSGG
                     QRPSNRNNKPL"
     gene            15423..15899
                     /gene="dksA"
                     /locus_tag="JBH85_06200"
     CDS             15423..15899
                     /gene="dksA"
                     /locus_tag="JBH85_06200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HAU0945790.1"
                     /translation="MTGQLIDKTKERLYNVKNDAIGNMGIAPYQETEGEEYMNEKQLA
                     HIEKILLAWRQSLMEEVDRTVSHMKDEAANFPDPSDRASQEEEFSIELRTRDRERKLI
                     KKIEDALERLRNEDFGYCEACGIEIGLKRLEARPTATLCIDCKTLSEIKERQNQGA"
     gene            15969..16802
                     /locus_tag="JBH85_06205"
     CDS             15969..16802
                     /locus_tag="JBH85_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0945791.1"
                     /translation="MFFMYFTNYGYRLNQIKKGSDQHWLFLPGGPGLGSEYLASFCDK
                     LTLQGTVSLVDFPKDGNNSEGQLDFVSWQEGLISLLKSLNKPILVTHSFSGMFTLNFP
                     EIENHLSGLVLMNTTTTNSFFQHVNEMRQKHNLPDLVPAASQYHLYPSNETYKKFWDT
                     YKHYCFTQEELPIGEQMMELFAYNNESYHYAIEHFYNDFHYKWHPQTIPTMTIASELD
                     YICPPAIFIQDKNFQCQNVINKVIYKAGHCPWILHLEQVQKCFDEFSGMIQEINIERI
                     L"
     gene            complement(16807..18072)
                     /locus_tag="JBH85_06210"
     CDS             complement(16807..18072)
                     /locus_tag="JBH85_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HAU0945792.1"
                     /translation="MFMRFVYSFLMYLLTPYLLFRLWRKGRKLPAYRQRIGERFCLGI
                     QENAPVDVWLHAVSLGEVIAATPLIDAMLNKHWSVLVTTMTPTGSERVKSRFGHKVAH
                     QYLPYDLPWVLKRFFKRTKPRVGIIMETELWPNLIKQAHASGVALFLANGRLSDRSLQ
                     GYLKLKFLFKPVLNQFSGILTQSNEDAERFIALGANADLVHVLGNMKFDLQIDSVDSS
                     QYRELKSHWGEDRLTVIAASTHDDEESQILSQLPRLQEAIPGVVLLIAPRHPERFQTV
                     YQLSVQAGFNTGCRSNLDTISRENEVVILDSLGELLGFYQISDFAFVGGSLVPVGGHN
                     VLEPIAMNVPVLSGNQVHNFKSICRELKEAQAILLVNHANELVDAIIKLYQDKESQST
                     MVANASSVLESNKGSVVRYLQKIESVLGY"
BASE COUNT         5787 a         3882 c         3311 g         5171 t
ORIGIN      
        1 caaaacaatg ttcaaaattg attcataatg aatcaaacat tatcaatatc atcgggttgt
       61 atttgtaaat tctcatcttg aatattaaag cttttttctt cgcccaatcg aatttgtaaa
      121 cccacattgt tttttgaatc agcatactta atcgcatttt ctttggtaat ttttccttct
      181 ttatataaat taaataaagc ctgatcgaaa gtctgcatgc cttgttccgc gcttcttgcc
      241 atgacttctt taatatcgtc tatcttccct ttttcaatca aatcggaaat gtaaggagag
      301 ttaatcaaga tctccaccgc tgcgacacgt tgattatcaa ctcctggtat caaacgtaat
      361 gaaatgattg cttttaaatt aagagataaa tctaataata tctgttgtct tgcctcatcg
      421 gggaaaaaat taatcactct atccagagcc tgattggcgt tattggcatg caaagtagaa
      481 atgcacaaat gtcctgtttc agcataagct atcgcatgtt tcattgagtt aagatcacga
      541 atttcaccaa ttaatatcac atcaggcgct tctctcatcg cgtttttcaa tgcattgtca
      601 tagcttagag tatcaatacc tatctctcgt tgatcaacta ttgatttttt atgttgatgt
      661 atatattcaa taggatcctc tattgttaaa atatgccctc tgtgattttc attacggtgg
      721 ttgatcatcg cggccagagt cgttgattta cccgatcccg tggacccaac aaccaatact
      781 aaaccacgca gctccaagac cagagacttt aaaatttgag gaagatttaa atcttctata
      841 gaaggtattt cgcccttgat gtaacgcacc accatagcca cttcgccacg ttgcctgaat
      901 aaattgattc ggaaacgccc tactccagct aatgaaaaag ccatattgag ttccatttta
      961 gactcaaatt ctttttgctg tgcgtcattc ataatagata aaacaatttc tgccatttga
     1021 ttcgatttga taggaacctg gccaataggt gatgtgatgc cctcgatttt aatatttggt
     1081 ggtgccccga cactgaaaaa caaatctgag gcacctttat cgaccatgag cttaaaaaaa
     1141 ggagtaatat ccataggtta actcaaaata ttattatatt tttaagttta gtagagactc
     1201 ctgaatttgc taggctctgc cttgtgctta ttttcctgat tgcttaactc aatagaggta
     1261 caggggcttc taatcgactg ttcctgtgct ccaattccgc cttacatgct tctaaaaacc
     1321 ctttttttgc agtaagagcc tcttctgaaa acgtactcat cctggacacc tcggcatata
     1381 atttactcaa aaactcagca cattcgagat cagaatgctc ctcatgcaac ttctctatgc
     1441 gttgctcgta tttattttga tcaactaatt gattggtagg tgcacttgca gataacatgc
     1501 cttgcaaata aggggtataa aaaggagaca tgctcaggcg ctcagcacca tcgttctttc
     1561 ctggactgca atagaatctc tccagtgcct gcttatactt tgacaccctc tccgcaccca
     1621 aaaactgatc ataatgcact acgcccgcgg ggaaattttt tcccaaatga tttctgggaa
     1681 taatattcat ctcttttaaa aaagacatga atcccttctc aaaatttgta atcccaggtg
     1741 cttcaggatg agtgactacg tctatcgcta aaatacgctc atcatctgat gaagtaaaac
     1801 tggttgataa tcctccgtta gtccccttaa gataacgaac ataaatcgca taagtaacag
     1861 gaaattcccc catactaccc gcttcgttca acatggcttc cattttttgt aaaataagtt
     1921 ccaatttttg ccctgcttcg tcatctttga ctggaatcaa ataactcaca tccctcatct
     1981 cctttggaaa agccacctga ggatgtgtga tatgattttc ataatctact tttggtgatg
     2041 taccacgagt acctgtgact actgctgctg acagtaacat aaaagaaggt aataaatgct
     2101 ttaatcctga gtccagtaag aaatccatca ctgaggcacc aatgcgaacc tgtaactctt
     2161 gagcaaaaga gcgaacgtcc ggatcataag gggccttttc cttttttcct ggtttgtcgg
     2221 tagtataatt ccattgacga atttgccatt tggaaaccag tttatccgat tcaggacagc
     2281 cgtaacttgg cattcccata atactgatgt attgattatt ctttaatata tcacttaacc
     2341 tgcctgtcat ttccctggta ttgggaaata attctattgt ttcacataaa ttaaatgcct
     2401 taaccgctcg taatttcatg ctaacaacaa tacccaacaa cccgctatga ccacctgtca
     2461 aatctttgaa atcaggatga tcagaattaa tttcacgcag gttgccgtcc atatcacaaa
     2521 ctgtaaccga ttcaattagg ccactgaaag ccggttcatc acgcccggta ccatgtcccg
     2581 ctgttccagc caagccaaca ggggtcaccc aggaaatcat gctaacagtt gacaaggata
     2641 actgatgttc tcgtaaaaaa tcggcaaaat cagccacctg catccctgca ctcacttcca
     2701 ccaaagtcat ggggagtcta tgaatgggat tgtctggatt aaaaacaggg ggatttttta
     2761 atggaccaat cacttttgca tgatgaaatt tttttgcaaa acggataatt acatcggtac
     2821 ctgccgtatc aggagatgct ttaccaccta cgacttgaga aaaagaaaat ccttcattgt
     2881 actgactctc ctgggcttcg ctccatggaa aaaagcaaca gcttttaccc ggtttatcag
     2941 tccatcccgc agtagctctc accgtcactt tatctttggg ttccctgtca gaattcaatt
     3001 ccttaatcgc cttcatcact gtctgaacct ctttttcatt tttaacttcc acgacaatcg
     3061 cggctggatt attaacactc tccatgtagt tagaccaacc aacagaatga gaaattttgt
     3121 tttgattcag aatttgaatg aacttacttt ttaactccgt aggtaacgcc ataattactc
     3181 cttgtaatat tagtcctcaa acggttaaac ataagtttaa tagagcaaac cgatgtacca
     3241 tgaacagtgc ctctcgatca ggtatacata aagacacttc aaaaatacaa tacaatactt
     3301 aatgaaaaac aataacgaat tttggtagtc aataataaaa aatataccct tttgattgta
     3361 cgcttcttgg aataacatcc gttgtgaata ggaatcttaa aaatcttatc cttgaaaaaa
     3421 tgagctcttt tttgaaggga aataaaatat atcgttttac tatattttga gtggcaaaca
     3481 tggaaataat ggatgatcca tgctagcgcc tgccggtatt tcggccgtca aaccaggaaa
     3541 atcaggtgaa gtaggccatg ctctgggggc atgcgtaata tcatcaccta aaaaacgcac
     3601 agaaaacact cttcttctat gccttccctc aactcctctt gccatgtgta aagtcagcat
     3661 atggaaacat acaacatcgc ctggctcaat ttcccatcca ataattggat accttgctcg
     3721 cgcctcttct ataggaggca actcctgcaa acttccttca ggaaaccatt ttgcctgatt
     3781 atctaaaaat gttcttggca ttaaccaggg acccaaatga gaaccagcga taaattccag
     3841 agttgaagaa cgactgacag gatcaaccgg aatccagaaa ctgcagttct gcttcccctc
     3901 aatattataa tacggctgat cctgatgcca gggtgtaacc tgtcgtgtac ctggttcctt
     3961 taccaacaaa tgatcatgat acaaccggac tgattggctt tgcattattt gagcggcagc
     4021 tactcccaaa ttcgtaccaa agataattcg ttgataaaaa ggattgtttt gccaagtaca
     4081 aaaatcctca acaaaataac caggatcatc gggtctgctg gctattttgg cacggggact
     4141 taaggaggat aaattaaatt ctattccttc ttttagaata gcaatttctt ccgcatttaa
     4201 aaattggcga agacatacgg caccattacg attaaaatca cggatagtat cttcattcat
     4261 tttatattcc ggtgtgattg gtttttgata actcacattt tctccaatac atctcgcaaa
     4321 tgtttaactg gctctaccgt catggaatcg atttgctgtt tgggagcatt ggcaaaaggg
     4381 actatagcac gcttgaatcc atgttttata gcctccttaa tgcgttcttg accactttgc
     4441 actggtctga tttcccccgc taatcccact tcaccgaata tgatggtttc actatcaaat
     4501 atacgattac gtaaacttga aatcactgca gccaacaaag ccaaatcact cgctgtttca
     4561 gtcactttca ctcccccgac tacattgata aaaacatcct gatcgtaagt agcgatacct
     4621 ccatgacggt gtaaaacagc taacaagata gccaggcgat tatgctcaag acccgcagta
     4681 acgcgtttcg cttgctgacc gtgggcctca tcaaccaatg cttgtacttc taccaacatg
     4741 ggtcttgatc cttcccaagt caccatcact gcactgccag gcgtaggttc gggctggcga
     4801 gataaaaaaa tagctgaggg gttggctacc tccttcaggc ctttgtcagt catcgcaaat
     4861 acacctaatt cattgacagc gccaaaacga tttttaatgg cgcgaatgac tctgaagcgg
     4921 ctatcatttt gcccctcaaa atagagaaca ctatcaacca tatgttctaa cacccgaggc
     4981 ccggctaatg ttccttcctt ggtgacatgc cctaccagga agatggccgt attggtcatc
     5041 ttggcataac gcaccaattg tgctgccgat tccctgactt gactaactcc tcccggagca
     5101 gaacttatgg cttcagtgaa tatcgtttgt actgaatcga cgacaataat tcgcggcttt
     5161 tccttttggg cttgagcaat gatggattca acctgagttt ctgccaatag ccgcagtccg
     5221 gccaaaggta gtcccaatct ttgggcacgc atggcaactt gttgtaatga ctcttccccc
     5281 gtcacataca atactgtttc ttgcatagat aaattagcca gcgtttgcaa cagtaaggtg
     5341 gatttaccga tccccggatc ccctccaatc aaaacaaccg agccataaac cagcccccct
     5401 cccaaaaccc ggttgagctc ggatatacca caatccatac gtactatttt gtccattaca
     5461 acgtcttcaa cagcagtgat gacagagcgc tgattagccc attgcccact tcgtaaagtc
     5521 ttgttttcag gcataatccc ttcttcaaca atggaattcc aggcgccaca ttgagtacat
     5581 tgtcctgccc attgtttaaa aatggccgcg cattgattac aaacaaactg ggttttcact
     5641 ttcataattt ttgccttgat tcaagcattt tatttagtac atttatgata actcgcgctg
     5701 aacatatttg ccttaaataa tttttaaatg aaccaggact tatcttatct tgaacgccac
     5761 ctttttcttt ttattgcact caatttacaa aatatttatt aaaactttac ttttcaaaaa
     5821 cactttcttg ctttattatt tgccgaagtg atttttttat aaaaaccgag gataaaatta
     5881 tggcaaaatt caccgtaggt caggatccag ttaaaggttt aactgaactt aaggcataca
     5941 tggaagagca aatttcaaaa attaaaaaag caacctcaga gcaggaaatc gatcaactac
     6001 ttgtagaggt tttgaatgag tacgatgata aaatgggttc attatcaaaa atttacaagg
     6061 gtggaaatga gcaagttgaa caactaaaaa ttgacgtaag aaaattatat gaacctttac
     6121 gtgatcaatt tagttataac cacccacaaa cactggttgg tgaatttcaa acaaaattag
     6181 aagaacaaca caaacgggct gaagaagaaa agcgtaagct ggaaaaacag cgcgaagaac
     6241 aattgaaact ggaaaagcaa cttgaagaag aaaagcaaaa acttgcaaaa caatctgaag
     6301 tagaagaaaa acctaagctt gaaaatcaac aggaagaaaa tataactcaa gctctccaga
     6361 aagttgatgg aattattcaa gagctcacac tcaaaataga cagagttgat caacaccagt
     6421 ataaaaaagc acatgacaca gcaaatacac ttctccaaag tcttatagct gctcgtgatg
     6481 agtatgagcg agacttaaga gccaatgaat tttctcagga acttgctgga agaaagttta
     6541 aattagcttg tcaagatgcc gtaaaaatag ctaaaccggt tttagaaaaa gacttaggct
     6601 ggggtgacta cctgaaaaat cttttaaagt gcttgggcaa cgcggtgatt accgtcttta
     6661 cgtttggtta tcaacaaggt ttcttcgctt atgcacgtcc agattcagcg aaagcggtag
     6721 aaaaagctga agaagatttg gggcttcgtc aagcagcttc atcacccaaa taattaaact
     6781 tcaaacaaaa acctgacatt cgcttggctt cacgatgttt aaatgcgaat gtcaggtttt
     6841 ttatacaaat cgcgcctgat tttcatagac ttatctgaca aacaatttgg cttcaattta
     6901 aattgattaa ccctatacca ggcactatgc attaatactt atctaataaa aaagaatatg
     6961 aaaatatttg cttttcaatt gcctgttttt gctttaactt acctaaggga ttattttaaa
     7021 atgtgaggtc aaaatcatgc ctgctttcaa aaaaggacaa aatccggtaa cagaacttac
     7081 cagattaaaa gagtatatgg aagaccaaat agcgaaagca aaagagtcct cctctttaac
     7141 agctcaacta aagttcctgg aaaacgccca cacagaacac tttgtcaaaa tgggctctct
     7201 aaccaccatt tacaagggcg gcagtgaagt agttgaccgc ttgaaaattg aaatacgctc
     7261 tttatatgaa gaaatgctcg agttaaaaga taaatgccgt gatcagattc aacaatatga
     7321 gacatctata aaaaacagcc ccaccttctt cactacgagg aatagcaaaa caaaggatga
     7381 agaatttgat ctggattttg ataaagcatt tggtctttaa acgctgttaa ctacctaatg
     7441 ttggtctttg atattaaact tgcaaagtcc aacatccagt tctggagttc ctttataaaa
     7501 cccaaagctg ccaataagct tctatgattg attttccact tacttccatt cagaagttga
     7561 atcctcgcgt taacccagta taatcacacc ttttatcgcc ttggaaaaca gttatgagca
     7621 aaggcataca tttcgaacaa tcaatcaccg aactcgaaga aattgtccgg caactggaaa
     7681 agggagagct tagccttgaa gaatcgctga aacaatttga aaagggaatt agccttgcaa
     7741 gacgttgcca aaatgctttg aatcaggcag agcaaaaaat tgaaacgtta actggtactg
     7801 attccaacat tgaactcgac tcagatgaac aaacaagtga ttgataagta tacccaaaga
     7861 catgagctat atctcgagca attgctcaat gaaataataa taccagctcc ccaaattcgc
     7921 tccgcactcc attacgcttt attttcaggc ggcaaaagaa taagacccat tttggtttat
     7981 ttggctggcg atttaattga tgttgaccag ggagttctgg atattattgc ggcagcgctt
     8041 gagttaacac attgctattc cctgattcat gatgatcttc cagcgatgga caatgacgat
     8101 ctgcgccgcg gtaagccgag ttgtcataaa gcatttgatg aggcaaccgc tattttagtc
     8161 ggcgatggca tgcaagcttt agcgattgaa gtcttactga tgagattatc gccccttctc
     8221 cccgcagcac aagtcgtagc cattactcaa gtattggtaa atgccagtgg aataagtgga
     8281 atggttagtg gccaaagtct tgatttatca gaactggcca aatcatcggt aactgaggag
     8341 caattaagag aaattcatct tttgaaaact ggaaaactga tcctggcgtg ttttgaaatg
     8401 gttttagcag cacaacatga ggtatctgag caaatcaaat ccgcactaag aacttatggg
     8461 aaacatatag ggcttgtatt tcaaatgcaa gatgattacc tggatctgta cgctccaact
     8521 caaatattgg gaaaaggtcg ctcctcggat caggcaaacc aaaaaaccac ttttgcaacc
     8581 ttatttaaca agcaacaatt ggaagaagaa atcgctgttc attaccaaat tgcaatggat
     8641 tctctgcggt tatttggtag taaagcggct gcattaattg aattaacaaa acaattacaa
     8701 aatcgtagca atttgtcttg acaccattga tgcaccggac aatccgattg atatccgttt
     8761 taaattagga ttttttaaca acacgcgaaa caggaatcca ggtttctata ccttgctcca
     8821 ttttacgttg cgcacccttc caggcttgcc cataaactac ttcataagtt aagggatatt
     8881 tgccagtagt agtacgcatt gtagcgtatt gtgcttcaaa ttgtttccat gcacttttac
     8941 ctgtgagccc gtgatttcgt ttaggattaa tatttcttac cccttgagtt tttagagcta
     9001 atagcaattg gggaagggtc tcgtaatgta tagacagtaa ttccatgtca atgactgggt
     9061 ccatgaaatg ctcggcaatc agacaatctc caatatcatg catatcaaca aattcattaa
     9121 catgagcata ttgattagcg gcagaccagg ccgtttgtaa ttccttgaag gtatcaggac
     9181 ccaaggtagt aaacattaag catccgttga cattcattac acgattaagt tcccgaaaaa
     9241 ccatgcctaa tgagctactc caatgaataa cctggttagc aaaaaccaaa tcaaaagcgc
     9301 ctgttgcaaa aggcattttc tgcatatcgg cactgactaa aggccattta cgacgccaac
     9361 cctgtttttt cctggcttgc tctaacatgg caaacgacaa atccattcca acaatctgcg
     9421 ctttcggata taacaaagcc aattcttttg aaaaaaatcc aggcccacac cccaaatcaa
     9481 gaattcgtcg aggagcaatt ttcaaatatt gtaatcgctc aaacaaacga ctgccgattt
     9541 ctttttgaac tttggccaca cgctcatagt catcggcatg tttgctaaat gccttgctta
     9601 tttcattgtt gaccgtcatt ataaagacca gggaaaaatt aaatgctgga aatccaacta
     9661 tcgtgctcca aaaattatta agtataacac agaacttacg tttaccttca atatgcactc
     9721 tttgcaacca gttccacaaa agccaacttg cagtttgctc taattgcatg gagtttatga
     9781 aacaacttgg atcttgctgt caatactgtg cctaccccct ttctgatgat acgtatctgg
     9841 tttgtggtca atgcgttaga aaaaggccct cctttgatag tgcttatata gcgtatcgtt
     9901 ttgaagaacc tctgcgtagt ttaatacatc agtttaaata ccataatggc ctttatctgg
     9961 cctcgtttct aaagcaatta cttcttaatg ccttacccaa aaacgcattg aaaccagatt
    10021 gtctaattcc cgttcccatg catcccaaac gattaaaacg aaggggattt aaccaggctg
    10081 gtgtattaac cagattatta gctcgtcaat taaacatccc ttatgattta tattattgcc
    10141 aaaaaataat caataccgct tcacaagcca accttgatgg agagcaacga aggaaaaatt
    10201 tacgtcatgc tttttatgta tcagctgtaa cttatgaaca cgttatgatt gttgatgact
    10261 tattaaccac aggcagcaca gccaatgaaa tggcacatac attaaaaaat gctggagtta
    10321 agagagtaga tatatgttgt tgtgcgcggg ctgtaactaa aaattaaaag gcagcccgta
    10381 cctatgagtc cactgtcaat ggtgtaaata tcgattcaaa tcattcatta ataaatgcac
    10441 taacaaaaca caaaatagaa taatcatcaa gcgatgaagc aagacttcca cagccactga
    10501 gacaggtttc ccacgaattt tctctataaa cgaatataaa atgctgcctc catcaaggcc
    10561 aggtatagga aataaattga ccaaagctac agcaagactc aaagtagcaa tgaatagtaa
    10621 aaaaacgata acgccttgag ttaaagaagc cacagaaaca gaaaaaatag ccaacggtcc
    10681 aagtaaaatt gaaaaaggaa taaccccgag aaacaattgc ttcaatatca ttataaaaaa
    10741 gtacatggta tggattatct cagcaaacgc tttttgcatt gaagccagta gagatggata
    10801 gcgcgtcaaa ctggaaactg ctgacaaatc aggtttgatc cctagactct cgagcagaga
    10861 gccatctttt gaagtaaatt caatctgact taaatcaaga ttcaattgtt ttaattgttg
    10921 attcccttgt cttaaaacaa tgtgaacatc cttttgcccc caatgaatta ccaattgcat
    10981 acctacccct tgccaggaat cagttgggta attctctata gcaacccatt gatcgcctgc
    11041 ttgaataccc gccttagcag caaggctatc cagttttacc gattgaattt gaggttgttt
    11101 gtagctaatg ccaatataaa aaaccaatac caaggctatc catgcggtaa taaggttggc
    11161 aatcgctcct gacaataaaa tcagcacacg aatccaaatt ggtttcttat caaaacaata
    11221 agcattttct tgtggcttta ctggactaat ccgcgaattc agtaactgaa cataccctcc
    11281 caaaggccac attgcccaga tccagttaca accactttgc gtttgccatt gaattaatgg
    11341 ttttccaaat cctatggaaa ttttactaat tttgacctga aacaggcggg ctgccagtgc
    11401 atgccccagt tcgtgtatac ctatcaccag tattaacgta agtattatgg ctaccaatgc
    11461 cataatcata atggactcct tatccagaat atgaggctta ttaaaaacac accagaaaga
    11521 ataatctatt tgtgcgtatt atcaactacc agctgcaaca ttggaatccc ttttcttcca
    11581 gccaattcat atcctttacg ataaacttca aaaattcgat aaggttgatt cgtatcacta
    11641 tcaaccaact ccacctcatc gccctgttca tcaactaaag tgacagtcaa atgaatctcg
    11701 cgaaatccat caacctggta acgctcttta aataatttca gaaccctctc caggctctca
    11761 acagtttcaa tagcattatg ttgaccttgc aggataatgt ccatttaaag ctcctattga
    11821 aatgacacat gttgtgcaat atgtggctat acatgttggc ggcaaaactc aacaggactt
    11881 tagaaagtca ctgttctcat tattagatat gagcccgttt gaagatagag aaagtaaatt
    11941 gaatcccttg ccagcaaatt ttcccaagtg ggacaatctt gaggaagaag gcgggtaaaa
    12001 aatatactgt aaaatgattg caagaaacag aaatacaagg aaccttgtct ttttctctac
    12061 aaattttaca atgaatcgtt tacaattcgt taattccctt aaacaaataa atcaagattc
    12121 tatggtattt gtagcttgcg ggcttaatca taaaactgct ccaattcatg tgcgtgaaaa
    12181 agtcgcactg cagccagcca tgcaagattc tctattgagc agtctgcttg atttacctga
    12241 agtcaatgaa gcggctattt tatctacatg caaccggact gaaatctact gtgataccaa
    12301 tacccctgag gttcttggaa actggttagc tcatgaacac caattatcag aggaattatt
    12361 atctcaattt ttgtatatcc atcagggaaa agaaggaatc aaacatacct tgcgtgttgc
    12421 cagcggtttg gattccatga tgataggcga accacaaatc cttggccaaa tgaaacaggc
    12481 gtatcaacat gcttgtcgtc ttggcacagt aaaaacacaa ttacggcctg tgtttgaata
    12541 tattttcaga gcgtccaaac gcatcagaac tcgtagcgga attggggcta atcccgtatc
    12601 gattgcctat gctgcggtac aactgatagg gcaattattt aaaaactatc attccttaag
    12661 tgtcttttta attggttccg gagaaacagc ctctctggtt gctaaatacc tgcatcagca
    12721 tggtgtccat cgttttttga tagcgagccg cactctggaa aatgctcaaa aattagctga
    12781 aactttcggt ggaaaaacac tgtccattgg tgatatcccg caatatttac ctctggccga
    12841 tgttgttatt tctgccacag catgcccact cccattcatc aataaaagcc tggttgagca
    12901 tgccttagag caaagaaacc atgcccccat gtttttattg gatttggccg ttcctcgtga
    12961 tattgaagga aatgtcaatg aattggaaca agttcatctc tataatgtag atgatttaca
    13021 atccatgata gaaaaaggga tggatgaaag gcgaaatgcg gcattacaag cagaacaatt
    13081 gatcgaaagc gaactggata actacattag atggcatcgc tcgcttagag ccaaagacgt
    13141 catttgcgat taccgcaatc aaatgcacac tttggctcaa caggaattac aacgtgcttt
    13201 gaaaaaaata tccgctggtc aaaatcagca agacgtttta aatgaattca gtatgcgctt
    13261 ggtcaacaag ctaactcata atcccaccat aggtttaaga caaatagcat gggataacag
    13321 agaagactta cttgacctcg cgcgatatct ctttgataca acagccaatc aatcattata
    13381 tgaagaaatc tcttgagtta aaattacagc aaatgttgga gcgatacgag gaagtaggcc
    13441 gcttactgtc cgaagcatcc attattgccg atcaaaacca atttaagtct ttatcaaaag
    13501 aatatgccca acttgaacca gtttcccaat gttatgagtc gtatttagag gcaaaaaata
    13561 atttggattc tttaaacgaa ttattggaaa gtgatgataa agatttagcg actatggctg
    13621 aagaagagat tgacactgtc aagaaacaaa ttgaggaatt ggatgaacaa ttacaatggc
    13681 atctcattcc taaagatcct gatgatgaac gcaatattta tcttgaagtc agagccggca
    13741 caggtggaga cgaagcagct atatttgccg gagatctctt tcgaatgtac agccgttatg
    13801 cagaaagcca gggttggcaa attgaattaa ttagcgccag tcatggtgaa catggaggct
    13861 acaaggaaat aattgccaaa atcagtgggc aagcggttta ttcacaactc aaatttgaat
    13921 caggagctca cagagtacag agagtacctg aaactgaatc gcaaggtcgt gtccatactt
    13981 ccgcatgcac ggttgctatc atgccggagg tggatgaaat taatgacatt cagataaatc
    14041 ccgatgactt acgcatcgat acttacagat cttccggagc cggtggacag catgttaaca
    14101 aaacagattc tgccattcgt atcacacaca ttcctacagg agtggttgta gagtgccagg
    14161 atgagcgttc acagcacaaa aaccgtgcca aagcaatgtc cttgttaaaa acaagattat
    14221 tagatgccga agtaagcaaa caaaaacaag aacaagctca aacacgtaag tcactggttg
    14281 gtacaggtga ccgctccgag cgcattagaa cttataactt tcctcaaggc cggctcactg
    14341 atcaccgtat caatctgact atctaccagc ttagtgacat catggaaggg aatttatccc
    14401 tggtcattga cccgttaaaa cgcgaatacc atgctgaact gctagccgat ttaggtcgac
    14461 atgattgata ttcgttcatt actggaacaa gctctgcaac aattcaaagt caaaaaccag
    14521 gaaaccaagt tagaggcaga acttttactc tgccatgtgt taaacaaaaa ccgggcctat
    14581 ctttttgccc atccggatgc tttggtttct cctgaacaga tagaaaccta tttgcagatg
    14641 attaaacaac gtgctgaagg tctaccaatc gcctacatta ctggacagcg ggaattttgg
    14701 tctctttcgt taaaagtaac acccaatgtt ctcattccaa gacatgaaac cgagcgtctg
    14761 gtggagcttg cactggagct aatacctgac aaggagaatg tttctgtcct tgatctggga
    14821 acaggaagtg gtgctattgc cttggcgctt gcaaaagaaa gacccctttg gcatattgac
    14881 gcctgtgatt tcagcaaaga ggcattggag ttagcccgtt ataacgctaa aacactcggc
    14941 ttaaacaata ttaatttctg tcattcctac tggtttaata atctccccct aaaacaatac
    15001 cacgctattg tatctaatcc gccctacatt gctgaaaatg atcctcattt aaaacatggc
    15061 gatgtccgct ttgaaccaac aagtgcatta gtcagtagtc aagatggatt agctgatcta
    15121 caatatatta ttcagcacag ttatgaatat cttttgcctg atggactgct cttggttgaa
    15181 catggttttg aacaaaaaaa tgagataagc gctatactta atcaattagg atataaaaac
    15241 atacactgtt ggcaagatct tcaaggacat gatagggtaa gtggaggaca acgtccaagc
    15301 aatcggaata acaaaccttt gtagtgatta tttttttgtt gatgatactg acattttttg
    15361 gtatacgtag cgattttgta taaaactcag tttcagatac agaatgaaat atagggtctg
    15421 gcatgacagg acaattaatt gataaaacca aagagagatt atacaacgtg aaaaacgatg
    15481 caataggaaa tatgggaata gcgccctacc aagagactga gggcgaggaa tatatgaatg
    15541 aaaaacagct ggcacatatt gaaaaaatat tgctcgcctg gcgccaatct ttaatggaag
    15601 aagtagatcg tactgtctcg cacatgaaag atgaagcagc caacttccca gatccttccg
    15661 acagagcaag ccaggaagaa gagtttagca ttgagcttag aacccgcgac agggaacgaa
    15721 aactcattaa aaaaatcgaa gacgctcttg agcgattaag aaatgaagat tttggatatt
    15781 gtgaagcctg cggaatcgaa attggcctga aacgtcttga agcaagacct actgcgacct
    15841 tatgcataga ttgtaaaact ctatctgaaa tcaaggaacg ccaaaatcag ggtgcttgat
    15901 tctttcttgc ctctgaacat taaacaataa attcccgcca ggcgggagtt tattattaca
    15961 agcaatcgat gttttttatg tattttacca attatggcta cagattaaat caaatcaaaa
    16021 aaggctcgga tcaacactgg ctgtttctgc caggtgggcc ggggcttggt tctgaatatt
    16081 tagccagttt ttgcgacaag ctaactttgc agggcactgt aagccttgtt gattttccaa
    16141 aagatggaaa taatagtgaa ggccagcttg attttgtatc ttggcaggaa ggcctcattt
    16201 cattgctgaa atctttgaac aagccaatcc ttgttaccca tagtttttca ggaatgttca
    16261 cgctgaattt tccggaaatt gagaatcatt taagcgggct tgttttaatg aatacaacaa
    16321 caaccaacag tttctttcag cacgttaacg aaatgcgtca aaaacataat ttgccagatt
    16381 tagtccctgc tgcgagccaa tatcatttat atccatccaa cgaaacctat aaaaaatttt
    16441 gggatactta taaacattat tgtttcactc aggaagagct accaatcggt gagcaaatga
    16501 tggaattatt tgcctacaac aatgaatcct atcattatgc catcgagcat ttttataatg
    16561 attttcacta taagtggcat cctcaaacca ttccaaccat gaccattgcc agtgaacttg
    16621 attacatttg tccacctgca atatttattc aggataagaa ttttcaatgt caaaatgtga
    16681 ttaataaagt catttataaa gcaggccatt gtccatggat actccacctt gaacaagttc
    16741 aaaaatgttt tgatgaattt tctggtatga tacaagaaat caatattgag agaattttat
    16801 aacaagctaa tatcccaaaa ctgactcaat tttctgtaaa tacctcacta cagagccctt
    16861 attactttca aggactgaac tggcgtttgc aaccatagtg ctttgagatt ccttatcctg
    16921 atataacttg ataattgcat caaccaactc attggcatga ttcactagca aaattgcctg
    16981 agcctcttta agctctctgc aaattgattt aaagttatgc acttgattcc cgcttaaaac
    17041 aggcacattc atcgcgattg gctccaatac attatgacca ccaaccggga caaggctgcc
    17101 gccaacaaaa gcaaaatcac taatttgata aaatcccaaa agctcaccca agctgtcgag
    17161 tataacaact tcattttctc tggaaatcgt atccaaattg ctacgacacc cagtattaaa
    17221 tcctgcttga acactcaact gatagaccgt ttgaaatcgt tctggatgac gcggagcaat
    17281 taataacact acccccggaa tagcctcctg caaacgaggt agctgagata aaatctgaga
    17341 ctcctcgtcg tcatgagtgc ttgctgcaat gacggtaagt ctatcctctc cccaatgact
    17401 ttttaattcc ctgtattgac tactatcaac agagtcaatc tgcaaatcaa acttcatatt
    17461 ccctaataca tggactaaat cggcatttgc acccaaggca atgaatctct cagcatcctc
    17521 attgctttga gtcaaaattc ctgaaaattg attcaaaacc ggtttaaata aaaatttaag
    17581 ctttagatat ccttgcaagg agcgatcaga taagcgtcca ttcgccagaa ataatgccac
    17641 tcctgaagca tgagcctgct taattaaatt aggccacaat tcagtttcca taatgatccc
    17701 gacacgaggt ttcgttcttt taaaaaatcg tttgagaacc caaggtaaat catagggtaa
    17761 atattgatgc gctactttat gaccaaatcg agattttact cgttcagaac ctgtaggggt
    17821 cattgtggta actaacactg accaatgttt gttgagcatt gcatcaatta aaggtgttgc
    17881 cgcgatcact tctcccagag aaaccgcatg aagccataca tcaactggtg cattttcttg
    17941 tattcccaga caaaaacgct ctcctatcct ttgcctgtaa gctggcaact ttctaccttt
    18001 ccgccacagg cgaaaaagca agtaaggagt cagtaagtac attaaaaagg aatacacaaa
    18061 acgcataaac aggtaccaaa cacaaaaagg taaagtatat acctaaaaca gttccttgtg
    18121 cgatatgtta caattcaatt agagactatg t
//
LOCUS       DACVWI010000049        17922 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.049, whole genome shotgun sequence.
ACCESSION   DACVWI010000049 DACVWI010000000
VERSION     DACVWI010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 17922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17922
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.049"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            134..775
                     /locus_tag="JBH85_06215"
     CDS             134..775
                     /locus_tag="JBH85_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HAU0945793.1"
                     /translation="MRTSSFLDRLIGEVDSALRTLVLPQKRITTRQSPAENLADTVLS
                     AQEKKHISGLMRVNHAGEVCAQALYQGQALTARLTHIKEQMASAAAEEVDHLAWCEER
                     LYELGSKPSLLNPIWYCGSVLLGALAGLAGDKVSLGFVAETERQVTAHLQRHLHYLPE
                     KDKKTIAILKRMQEDEEHHAHTAMEAGAVELPYIIKQLMNAVSKLMTQSSYYI"
     gene            792..1787
                     /locus_tag="JBH85_06220"
     CDS             792..1787
                     /locus_tag="JBH85_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HAU0945794.1"
                     /translation="MDYNTIFILFVIFIAFVFDFINGFHDAANSIATIVTTGVLTPRQ
                     AVLWAAFFNFIAFLIFNLTVAQTIGYGLIDTDLVDTYFILAALMGAIFWNLVTWYYGL
                     PSSSSHALIGGLAGAAIAKGGLSSLKITGFAKVAAGIFISPVLGLLIGLLFTHIFSLF
                     LRHKNEEELNTLFKSFQLISSALLSITHGGNDAQKTMGIIAVLLFSASWLDGVFYVPF
                     WVVISCHGVISLGTLAGGWRIVHTMGTKITKLNTLKGCAAETGAAITIFAATEFGVPV
                     STTHTVTGSIAGVGLISGIGGAHWKVLRRIFYSWLLTIPAAALVAAAIVNIAPTA"
     gene            complement(1797..3188)
                     /locus_tag="JBH85_06225"
     CDS             complement(1797..3188)
                     /locus_tag="JBH85_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAU0945795.1"
                     /translation="MDLFRKKDIKGSLDNESHLAKCLSVFDLTFLGVGAIIGAGIFVL
                     TGIVAATISGPAVIFSYVVAGFACAFAALSYAELAASIGGCGSAYGYAYAGFGELIAW
                     IVGWDLLLEYSIAVSAVSIGWSGYANDFLMALKIFIPTHLLHGPADGGDLNILAILII
                     AVLTTLLIVGVKSSSRFNNIMVLVKLLVIFIFIAIAFGEVKVENWSSFMPYGWAGVMK
                     GASIIFFAYVGFDAVSTAAEEAINPQRDLPIGIIASLAICTVIYILVSGLLTGIAHYT
                     TLNVSSPISHVLLVLGYKTAAGLVGVGAIAGLTTVMLVLFYGLTRVFLAMSRDGLLPR
                     FLSKTNEHTKTPIRIILLCGILMASLASVTPIGTLAELVNIGTLFAFIVVCGGVLYLR
                     RTHPDMERPFKTPFMPYVPILGIISCFYLILNLPWVTILRFIIWMAVGMAVYFAFSRG
                     NSALSVEGDCAAE"
     gene            3348..3920
                     /locus_tag="JBH85_06230"
     CDS             3348..3920
                     /locus_tag="JBH85_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid:lipid A palmitoyltransferase"
                     /protein_id="HAU0945796.1"
                     /translation="MKRLISCLTIICALNASAAAETTSNPCSRWISFLKPVCQRIHQT
                     WTEGHDDMYFSGYAWHNRYVYSNEKIKSYNETAWGGGLGKSLFDEKGNWHGLYAIAFL
                     DSHRHLEPAVGYAYLKTASVNKDLKAGLGYSVLVTSRVDYDNVPIPGALPWAALFYKR
                     ITIAATYIPGSSREGHENGNVLYMLGKISL"
     gene            4060..4485
                     /locus_tag="JBH85_06235"
     CDS             4060..4485
                     /locus_tag="JBH85_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4949 domain-containing protein"
                     /protein_id="HAU0945797.1"
                     /translation="MMLKTQLTAFIGAVILAGSSLANPIKPEVCPSVPSIQSEGMSMS
                     SEILEGMYITYNLSHYNTSSSWVFIVGPIAAENDDMALAESNKLLSTMSGSPHPEDDG
                     EGNWICQYTTKSKDIIAFAIEADDMLSPLKMMRYLRTIR"
     gene            4632..5174
                     /locus_tag="JBH85_06240"
     CDS             4632..5174
                     /locus_tag="JBH85_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF962 domain-containing protein"
                     /protein_id="HAU0945798.1"
                     /translation="MKSFIEQAQFYATYHQNQATRYTHMAGVPLIMLSIMIFLGFVKI
                     VIPGVYATDLACLATLATLIYYFLLNWQLALALTPILIFLLWLASWFNYDGPTKFGLW
                     VFIITFVVGWGLQFYGHFIEGKKPAFMVNFTQALIAPLYLTAELFFMAGLMNSLREQI
                     YGNEEVNTEEISKTKTKSKS"
     gene            complement(5244..7367)
                     /gene="rlmKL"
                     /locus_tag="JBH85_06245"
     CDS             complement(5244..7367)
                     /gene="rlmKL"
                     /locus_tag="JBH85_06245"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HAU0945799.1"
                     /translation="MNYSLFISCSKGLEYLLEDELKGLGLHVTQVSPQGVYGEASLPV
                     IYNLCLWSRLANRIQLILFSGHATKEQAVHQLCTDFHWQTVFTHDKTIAIEFHGASEQ
                     IRNTMFGAQIVKDGIVDHFRRLNGSRPSVDKEKPQILIHAHLKNDILTVSFDLVGYSL
                     HQRGYRKKAGKAPLKENVAAAMLLRAKWPELAAQGYSLHDPFCGSGTLVIEAAMMAAH
                     IAPGLLRQDQSLQYWARHQSSLWEKLRTQALQQVKPLAVKLIGTDADSKIITLARSNA
                     ERAGVLPLVEFNTLSLNACRPGTKRGLVVCNPPYGERLGEVTQLVPLYQELGTTLHTC
                     YQGWQAAILTSSPVLAKALGLRADKQYTLYNGPLECKLYCLTLSAANKLKNTPNAPLS
                     DNAQMLFNRLEKNRNHLQKWARKNQITCYRIYDADLPEYAYAIDIYNDYAVLQEYAPP
                     ASIPVHKAEKRSLEMLQVVPRALGIHPEKLIVKQRKQQKGSEQYQKIGKTSQRLIVTE
                     GKAKLIVNLYDYLDTGLFLDHRLMRLKFAQLEPGTRFLNCFCYTASASVHAALAGALT
                     TNVDLSKTYLLWAEDNFRLNDINLSKHQFLQYDCKEWMKTTRDKFDVIFLDPPSFSNS
                     KRMSDILDIQRDHVSLINMAMRLLNPDGVLYFSTNLRQFKLEPMLKEKYAVQDITPQT
                     IDQDFKRNSKIHHCFKIVMPHFADN"
     gene            complement(7364..7843)
                     /locus_tag="JBH85_06250"
     CDS             complement(7364..7843)
                     /locus_tag="JBH85_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HAU0945800.1"
                     /translation="MDEQISKSQKKRDAHYLQDIGIKFIDLSASKLDSLPLPDNLRQA
                     IVDARSIKSHGAKRRQAQLIGKLMRAADFEAILAAYEKILEEESSVTASFHEIELWRD
                     RLLQDGKDALTEFIDAYQPEDVQQLRQLIKKALDDQMKEKNTGAAKALFRYLRSLIK"
     gene            complement(8035..8946)
                     /locus_tag="JBH85_06255"
     CDS             complement(8035..8946)
                     /locus_tag="JBH85_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HAU0945801.1"
                     /translation="MAFFLITLCILILSFFCLAVMVLKFIQQPSLPLSFSQYVKLMCS
                     GVIAFIADTVGVGSFAVNVALAKLLGTFRDDELPAVNNGAQVLPGAIESLFFIYMVDV
                     DLTTLLTLVTGTCIGGLVGGFVVSQLSKQAIRLAMICSFALIIVLLIAHQLRLLPVGG
                     DLTELHSWKLVIGFFAMVVCGSLTSVGVGLFVMVQGVLFLMNVSPVVAFPIMTTAGAM
                     QQPLTTLVFLQKNKIPLKKTLILSFSGCLGVMITIPIFTKLTITWLHFLLLFILIYNF
                     LAIGHTYLRSRPVKQYVQSSVKLAAAD"
     gene            complement(9169..10851)
                     /locus_tag="JBH85_06260"
     CDS             complement(9169..10851)
                     /locus_tag="JBH85_06260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M4 family protein"
                     /protein_id="HAU0945802.1"
                     /translation="MCMLKKTMFFILSISASSIFAADNVDLYQAPLNSINKYPILQTP
                     KNAIILKSSSAVIDNSLQKLNQTKEDNQMIVRYQQLYKGIPVIGAQVMITKGTDSGVQ
                     SNDNAEVNGHLLENIELNTKPAISAQQAKEYAKKSYFQFSSQSNIQQETAELQIRPDH
                     NNQLKLVYLVSFKSVQQDGKPDWPFFVIDAQTGALIKQWNNIKNYLDTGPGGNEKVQE
                     YWYGKDGLPALDVTQNGSQCVMENSKVKLVNLHSQWDWENTINTPFEYVCNNNIEENI
                     NGGFSPGNDAYYFGHVIVGMYKDWYGLNALQHSNGAPMQLVMRVHFGQNYDNAFWDGQ
                     AMSFGDGLDFYPLVSLDVAGHEVTHGFTEQHSGLEYHDQSGALNESLSDMAGQASRAY
                     LLEKNPQLYNKAYLQPNEVTWGIGETIVRDSYGKALRFMDYPSSDGSSADCLDKGIAQ
                     NNGSYCAISYDEVVAYANTHIALPQERQSFIVHTASGVFNKAFYLMSKDMGIKNAYHI
                     MVVANTKYWTPTTDFKNGACGVIYAARDLNTDINKVKSAFGQVGIDTAGCVI"
     gene            complement(11080..12465)
                     /locus_tag="JBH85_06265"
     CDS             complement(11080..12465)
                     /locus_tag="JBH85_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAU0945803.1"
                     /translation="MLRPVKIILLSVFLVGCYSEPYHRPHVEVINKWSVKDKNVKNID
                     SKNIPYIAWWRDFKDPTLNQLIERGLISNTSLGMSRGSIEAAEGELKKIRYQWVPTLD
                     LMTGYSRNPATGFPGVLIVFIPNYTINIINQIREQKRAKYTLAQVKAEDDALKLTIIS
                     QIAASYFTYLAEIERKEFLQTLANDLTQLAKVASKVYQGGLSSEIEQEELYSQVNLIQ
                     GELEVTERNIVISRNALRYLLNQNPGEIKTVKKLLQLKNRKLIPGSLPLTVLENRPDM
                     QVAENRLRASHEGIGVAESNLLPTIQLDYIGGLAAGDSRYALPKKTVKFNDQLLKAPI
                     IDMPVLGAVAKAKGVNKVSYYNYIDTLQKALRDTTNALSENERLTNKLKQTASAQKHL
                     AKAYNLNDRLYQTGIQSYIETLNSKISLDKINISLNQDKLQELLSIVRLYQELAGGYR
                     ANLESEIKSSV"
     gene            complement(12449..13366)
                     /locus_tag="JBH85_06270"
     CDS             complement(12449..13366)
                     /locus_tag="JBH85_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HAU0945804.1"
                     /translation="MELLMRRWLGVQAFSYVELRSIQISTVFAFTIFVQEWLRYPRAG
                     WTGFAVMMIYAGFDNGTTIFRTYHRFLGVLLGLFTGYLLWFVGHLDYRTLILIMPLMV
                     FFAFFLVGRAYSVPTVFTVNVSVLGSGYFSTEDTLPVTYFIIDYTLCTLIAFTIILGF
                     EYFWFRHYGLMQRFIKSTQAEVIDDLYRLVRLLNQGKIKKTEWFQACIKLTDSLFEVN
                     KLITNSQFLISSEHAVGDEFNQFVELANRIFIGLKALYMAYYTKHYHTFDYYQLFQQV
                     QKDLVRLKDFVAGEQTIDLSEGVKHATSG"
     gene            complement(13339..14286)
                     /locus_tag="JBH85_06275"
     CDS             complement(13339..14286)
                     /locus_tag="JBH85_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HAU0945805.1"
                     /translation="MAPVLMFISQLKDKLASYDRYKEHRINGLKAVFVLELMIIFYFF
                     SSIDNPYFYYFYAPITCFTVEAAGTTLKEKYMLLLYTLLGSILSIFLFGIISVYNVLF
                     IFFVFFYTLALYFLVLHHFKKMLVIVPLMLSLASYSLIYGVEADSNFYIAINNALYTL
                     AAMAVIFAGLFIFPKKYYFDIWERAFLEVITGLESLSAKICKGEVKTIAIFSGIIVME
                     RYSKMLPRNIKCYSILKITILSFELILTMSYLLSFQKQLRKEYVIVLHHYLERLCQSC
                     KARQPLILSDQELPAFKETHELEILYQLILSWNYLCADG"
     gene            complement(14246..15319)
                     /locus_tag="JBH85_06280"
     CDS             complement(14246..15319)
                     /locus_tag="JBH85_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAU0945806.1"
                     /translation="MKEKFATWYKIVTKHIRFFFSYSIPMFFKKAKNYINLPIIVVGL
                     ALIIGLFHLFSYLIPFTDNAFVVTNVTPVAADVSGFITEIYVKNGQKVKKNDPIFSVY
                     RVPYELAYQQAMADYKEGLKKIDVFQKQIERTVALIKATDAELEKAQFALGLKKNKNV
                     AEAVSVLELKNLGYDVSTLSNKRNALQQEVAVLQAKIEQQRHTVASLKAKMDNAKVNL
                     DLTIVRAPGDGVIDNMYVSPNTPIEIHKPVFSFIDTANYYIQANFNETDLRNVRQGDK
                     AYIILRMYYFDKIFHGVVVNSLWAAERQSTAPKSQIQVVTNQNEWLLLPQRFPLQIKI
                     LDPDPDYPLNPGASAYVYISTKR"
     gene            complement(15420..16631)
                     /locus_tag="JBH85_06285"
     CDS             complement(15420..16631)
                     /locus_tag="JBH85_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HAU0945807.1"
                     /translation="MSLEVEPKPHGNNPYANRFDNLPLKDQGRFPRVAYVLQGGGSLG
                     AYQFGVVKGLLEAGYEPDWIAATSIGAIQAAIIVGNPPEKRVEKLERFWDEIAPGNFF
                     DFLGESDITLDFYNKLSAACALLFGQPEFFFPKWCTGTIPLWGDPTTLSYYDTTPLRK
                     TLLDLIDFELLNSCPIRLSLGAVQISNGHLIYFNNINYRIEVEHIMASAALPPGFPAV
                     NIDGELYWDGGVHSNTPLEVILEAIPAENTLCFLIDCFGGRSFIPKNMSEIEERRKDI
                     SYGTHAQRTIYNYLQRQKMRNSMMELSRILTDEQKKESAHLLDIGSPHHCTLVHLAYS
                     SRIVKAASKDYNFGRVVIKKRMEAGYSDAKAVLAEESQWGYLPEDGKSRLYESPNNLS
                     RLFRKRKKEVF"
     gene            complement(17068..17919)
                     /locus_tag="JBH85_06290"
     CDS             complement(17068..17919)
                     /locus_tag="JBH85_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HAU0945808.1"
                     /translation="MVIKMKAMEVEQLIQGTLIRDGGGVKLRRYIGADKTNHFEPILL
                     FDYFDSSDPLDYLAGFPPHPHRGFETITYLMEGSITHEDNKGNKGVINAGGVQWMTAG
                     KGIIHSEMPSSSTDRLHGLQLWLNLPAAEKWREPRYQEKSSDQLPIEVMESGATIKVI
                     AGRIDQGLSSPIVEIATRPLFLDITLPANATIQQTIPDDYQAVLFVIEGTVNTGGQQI
                     TAGTLASLTNGERIQIEGKDKENRNHCLLIAAAKLHEPIVRYGPFVMNTQEEIMQAIH
                     DFRTGHF"
BASE COUNT         5665 a         3678 c         3233 g         5346 t
ORIGIN      
        1 cccatcaata gctccatctt aactcgcagc caccgatatt aaattgcctt ataaaattta
       61 attgattaat gacttcaaac tacacactaa tcaagttaac atagagacct tacactttat
      121 ttttaaagta tccatgcgaa catcaagctt cctcgataga ttaataggtg aagtcgatag
      181 tgcgcttcga accctcgttt tgccacaaaa acgtattaca acgcgccaat ctcccgctga
      241 aaatctggct gatactgtgc tttccgctca ggaaaaaaaa catatttcag gattaatgag
      301 agtaaatcat gccggagaag tatgtgctca agcgctttat caaggacaag ctttaacagc
      361 acgacttact cacatcaaag agcaaatggc tagtgccgcg gctgaagaag ttgatcattt
      421 ggcctggtgc gaagaacgtt tgtatgaatt aggcagcaaa cccagccttt taaatcccat
      481 ctggtattgt ggttcggttc tattaggcgc cctggctgga ttggctggcg ataaagtcag
      541 cttgggattt gttgctgaaa cagagcgcca ggtaaccgct catttacaaa ggcatctgca
      601 ttatctcccg gaaaaggata aaaaaactat agccatatta aaaagaatgc aagaagatga
      661 ggaacatcat gcgcatacag cgatggaagc tggagcagtt gaacttccct atattattaa
      721 gcaattgatg aatgctgtat caaaattaat gactcagagc agttattata tttaacagga
      781 tatgattaca tatggactac aatacgatat tcattctatt cgtcatattt attgcgttcg
      841 tatttgattt tatcaacgga tttcatgatg ccgccaattc gattgcaacc atagtcacta
      901 caggtgtttt gacgccaaga caagctgtac tatgggctgc tttttttaac ttcattgctt
      961 ttctgatttt caatttaacc gtagcccaaa caataggcta cggactaatc gatacggatc
     1021 tggtggatac ttattttatt ttagcagccc tgatgggagc gatattctgg aatttggtga
     1081 cttggtatta tggactgcca tcaagctcct ctcatgcctt aattggcgga ttagctggtg
     1141 cggcaatagc caagggaggc ctgtcttcac tcaagattac aggttttgcc aaagtagcgg
     1201 cagggatatt tatatctccc gttctgggat tattgattgg cttattattt actcatattt
     1261 tctctttgtt tctcagacat aagaacgaag aggaactgaa tacattattt aaaagttttc
     1321 aactgatatc ttcagcatta ttgagtatca cgcatggagg aaatgacgca cagaaaacga
     1381 tgggtatcat cgcggtatta cttttttccg catcttggct tgatggtgta ttttatgtgc
     1441 cattttgggt cgtcatttca tgtcatgggg taattagtct ggggactttg gctggtggct
     1501 ggaggattgt gcataccatg ggaactaaaa ttaccaaact taacaccctg aagggttgtg
     1561 ctgctgaaac aggagcagcc attaccattt tcgctgcaac agaatttgga gtacctgtct
     1621 caaccaccca tacggtcact ggctccattg cgggagttgg gctaatcagt ggcataggtg
     1681 gcgcccactg gaaagtttta cgcaggatat tctactcctg gttgttgacc attccagcag
     1741 cagccttagt tgctgctgct attgtaaaca tcgcaccaac agcttagagt ccaatctcac
     1801 tcggcggcac aatccccctc aacactcaaa gcactatttc ccctgctaaa tgcaaaatag
     1861 acagccatac ctaccgccat ccaaattata aaacgcaata tcgttaccca tggcaaattt
     1921 aaaattaaat aaaaacagct tattatgcct agtataggaa cataaggcat aaatggagtt
     1981 ttaaatggtc tttccatatc aggatgagtt cgccttaaat ataaaacacc tccacaaaca
     2041 acaataaagg caaacaaggt gccaatatta actagctccg ctagagtacc aataggagtt
     2101 actgaggcga gagatgccat taatatgcca catagcaata taattcgaat tggtgtttta
     2161 gtgtgttcgt tcgtttttga taagaacctt ggcaataagc catcccttga cattgctaaa
     2221 aatactctgg ttaatccata gaacagaact aacataactg tggttaaacc agcaattgcg
     2281 cctacaccga ccagtccggc tgctgtttta taacccaaga caagcaggac atgactgatt
     2341 ggtgatgaaa cgttaagggt agtgtaatga gcaatccctg ttaataaacc tgaaaccaga
     2401 atatagatca ctgtacaaat agccagagaa gcgattatcc ctatgggtaa gtctcgttga
     2461 ggattaattg cttcttcagc agcagtagaa acagcatcaa accccacgta ggcaaaaaag
     2521 atgattgaag cacctttcat aacaccagcc caaccatagg gcatgaaaga agaccaattt
     2581 tcaaccttca cttcaccaaa tgcgatagct atgaaaataa aaataaccaa aagcttaaca
     2641 agcaccatga tattattaaa tcgagaactg gatttcacac caacaattaa taatgtagtt
     2701 aaaacagcta tgatcaaaat ggctaaaata ttgagatccc caccgtcagc gggaccatgt
     2761 aataaatgag ttggaataaa tattttcaga gccattaaaa aatcattggc ataaccactc
     2821 cagccgatgg aaacagccga tacagcaata gaatattcca ataacaaatc ccatccgacg
     2881 atccacgcga ttaactcacc aaaacctgcg taagcatatc cataagcact gccacaaccc
     2941 cctatgctgg cagccagttc agcataggat aaggcggcaa aggcgcaggc aaatccggca
     3001 acaacatagg agaatatcac ggctggtccg cttatagtgg cagctactat tcctgtaaga
     3061 acgaaaatac cagcacctat aatcgcgccc actcccaaaa aggtaaggtc aaaaacacta
     3121 aggcatttag ctaaatgtga ttcattgtct agcgaccctt ttatatcttt tttacgaaac
     3181 aagtccatga tagtatgctc tcaggtttat tttttattgt ttatttccaa aatttaagtt
     3241 atcaataaac ataaactccg gttatcttcc atctaacaaa accttacaca attaaactct
     3301 accattaaat tatagctagg agaaaccctg caaaggttaa aaattgaatg aaaagattaa
     3361 tttcctgctt aaccattatt tgcgctttaa atgcgtccgc tgcagcggaa acgacatcca
     3421 atccttgttc tcgctggata agtttcctca agcccgtctg tcaacgcatc caccaaacat
     3481 ggacagaagg ccatgatgat atgtattttt caggctatgc ctggcataac cgctatgttt
     3541 acagtaatga aaaaattaag tcctacaatg aaaccgcatg gggtggtgga ttaggtaaaa
     3601 gtctttttga tgaaaaggga aactggcatg ggctttacgc gattgccttc ctggattccc
     3661 atcgccattt agagcccgcc gttggttacg cctatctcaa aacagcttca gttaataaag
     3721 atttaaaagc aggccttgga tactcggtat tagttacctc tcgggttgat tatgataatg
     3781 tccccatccc cggagcatta ccgtgggctg ctctttttta taaaagaata acgatcgcag
     3841 caacctatat acctgggtcc agtcgtgaag gacatgagaa cgggaatgta ttgtatatgc
     3901 tcggaaaaat atccttataa agatggatta acttttgcta gctgcaaaag gtcatgtgaa
     3961 acaaaccctg attagatccc tttaaaacgg ttgcaactga aaattcaact tgttagtctt
     4021 ttgaagattt ttaactgcta agtaacaagg agaagtaaca tgatgttgaa aacccagttg
     4081 actgctttta tcggtgctgt aatcttggct ggctcttctt tagcaaatcc aataaaacct
     4141 gaggtatgcc ccagtgtacc ctctattcaa tcggaaggaa tgtccatgtc ttctgaaatt
     4201 ttagagggca tgtacatcac ctataattta agtcattaca ataccagttc aagctgggtg
     4261 tttattgtag ggccaatcgc agctgaaaac gatgatatgg cattggcaga aagcaataaa
     4321 ttactttcaa ccatgtcagg gtctccccat ccggaagatg atggagaagg caattggata
     4381 tgtcagtata caaccaaatc caaagacatt attgcatttg ccatagaggc agatgatatg
     4441 ctttctccat tgaaaatgat gagatatctc agaacaatcc gctgataagt ggataacacc
     4501 tgcacggaca cggaagcatg atttgcttcc gtgatttaac gaatagttaa gaactcctcc
     4561 tctctttttg gtacttcttt attttatgtg ctatgttttc ttcatgaccc taacttcagg
     4621 atgaaaagaa aatgaaatcg tttattgagc aagctcaatt ctatgcaacc taccaccaaa
     4681 accaggcgac acgttataca catatggcag gagtcccgtt aatcatgctt tctatcatga
     4741 tttttctggg atttgttaaa atagttattc caggtgttta tgcaactgat cttgcttgtt
     4801 tggctacgct tgccactctc atttattact tcctattaaa ctggcaactt gccttggcat
     4861 taactcccat tttgatcttt ttgttatggc tggccagttg gtttaactat gatggcccaa
     4921 cgaaattcgg actttgggta tttattatta cttttgttgt aggctgggga ttgcaatttt
     4981 acggtcattt tattgaagga aaaaaacctg cttttatggt taattttacc caagccctta
     5041 ttgcgccttt gtatttaaca gcggaattgt tctttatggc aggactaatg aattccctga
     5101 gagaacaaat ttacgggaac gaagaagtaa atactgaaga aataagcaaa accaaaacaa
     5161 aatccaaatc ttaaagagag tcgagcttca cgcttatgaa agggaagctc ggcaagagat
     5221 ctaataataa ataactgaat tattcagtta tccgcaaaat gcggcattac aattttaaaa
     5281 caatggtgaa ttttgctatt tcgtttaaaa tcctgatcga tggtctgcgg agtaatgtct
     5341 tgtactgcat atttctcttt taacattggc tctaacttaa attggcgcag attagttgag
     5401 aaatataaaa caccatcagg atttaacaac cgcattgcca tgttaatcaa agagacatga
     5461 tctctttgaa tgtctaaaat atcgctcata cgctttgagt ttgaaaagct ggggggatct
     5521 aaaaaaataa catcaaattt atccctggta gttttcatcc attccttaca atcgtattgc
     5581 aaaaattgat gcttggataa attaatatca tttaatctaa aattatcttc cgcccaaagc
     5641 aaatacgttt tggataaatc aacattcgtg gttaatgcac cggccaaggc agcatggacg
     5701 cttgcactgg cggtataaca aaaacagttc aaaaatcgag ttcccggctc taattgagca
     5761 aatttcaagc gcataagtct atgatccaga aatagtcctg tgtcaagata atcatacaaa
     5821 ttcactatca attttgcctt accttctgtc actatcaatc tttggctggt tttgcctatt
     5881 ttttgatatt gttctgagcc cttttgctgc tttctttgtt taactattaa tttttcaggg
     5941 tgaataccta aggcccgtgg aacgacttgc agcatctcaa ggctgcgttt ttctgccttg
     6001 tgtactggaa tgctggctgg tggcgcatat tcttgcagta cagcatagtc attatatatg
     6061 tctatggcat aggcatattc gggtaaatcc gcatcgtaaa ttcgataaca ggtgatttga
     6121 ttttttcttg cccatttctg taaatgattc ctgttttttt ccaatcggtt aaatagcatt
     6181 tgtgcattat cagaaagcgg ggcattcggg gtatttttta gtttatttgc cgcagaaaga
     6241 gtcaaacaat agagtttgca ctctaatggg ccattatata aagtatattg cttatcagct
     6301 cgtaatccta atgctttagc caaaactgga ctggaagtta aaatagccgc ttgccaacct
     6361 tgataacaag tatgtaatgt agtacccaat tcttgatata aaggaacaag ttgagttacc
     6421 tcccccaatc gctcaccgta aggtggatta caaacaacta atcctctttt tgtccctggt
     6481 ctacaagcat ttagcgataa tgtattaaat tcaaccaaag gtaatacgcc tgctctctca
     6541 gcattggaac gcgcaagagt aattattttg ctgtcagcgt cagtaccaat cagcttaact
     6601 gccagcggct tcacttgctg taatgcctga gttcgcaatt tttcccacaa agaactctga
     6661 tgccgagccc aatattgtaa ggattgatct tgtcgtaata aacctggagc aatatgagct
     6721 gccatcatgg ctgcttctat aactaatgtt ccagagccac aaaacggatc atgtaagcta
     6781 tatccctgtg cggctagctc tggccatttg gcccttaata acatggctgc tgcaacgttc
     6841 tcctttaaag gagccttgcc tgctttttta cgatatcctc tttgatgcag gctatatcca
     6901 accaaatcaa aactcaccgt taaaatatca tttttcaaat gagcgtgaat taaaatttgc
     6961 ggtttttctt tgtcgacaga aggccttgaa ccattcaagc gacgaaaatg atccactatt
     7021 ccatctttga ctatctgagc gccaaacatg gtattacgaa tttgctcaga ggcaccatga
     7081 aattcaatag ctatggtttt atcatgggta aaaacagttt gccaatgaaa atcggtacat
     7141 aactgatgta ctgcttgctc ttttgtggca tggccactaa ataaaataag ctgtattctg
     7201 ttagcaagtc ttgaccataa acataaatta taaattacag gcaggctagc ctcaccatag
     7261 acaccttgag gactcacctg agtcacatga agccccaatc ccttgagttc gtcttccagc
     7321 aaatactcca aaccttttga acaactaatg aatagagagt aattcatttt attaaagacc
     7381 ttaaatagcg aaacagtgct ttagcagcac ccgtattttt ctctttcatc tgatcatcta
     7441 atgccttttt aatcagttgc cttaattgtt gcacgtcctc aggttgataa gcatcgataa
     7501 actctgtcaa agcgtctttt ccatcttgta ataacctgtc gcgccacagc tctatctcat
     7561 gaaaagaggc cgtaactgaa ctctcttctt caaggatttt ctcataggca gcaagaatgg
     7621 cttcaaaatc ggctgcacgc attaacttgc ctattaattg cgcctgtcgt cttttagccc
     7681 catggctttt gattgacctg gcgtcaacaa ttgcttgacg taaattatcg ggaaggggca
     7741 aagaatccag tttggatgcg cttaaatcaa taaatttaat gcctatatct tgtaaataat
     7801 gagcatctct ttttttctgt gatttactga tttgttcatc catagggcga tatatttatt
     7861 aaaataacgt taattatact atataagtac ctatccagat aggataggct ctaatcaatt
     7921 ttgaataaaa acaagcaaat accaacatca acctgcatca tcctattagt tagccatagc
     7981 tttaaaagcc ctgttcccga aaaaacaatg aagaaaaatt ataaactgag agactcagtc
     8041 cgctgccgca agtttaacag atgattggac gtattgtttg acaggtcttg atcgtaaata
     8101 agtatgacca attgctaaaa aattatagat aaggataaat aaaagtaaaa aatgcagcca
     8161 ggttattgtt aattttgtaa aaattggaat ggtgatcata acacccagac atcctgaaaa
     8221 gcttaaaatc aaagtctttt ttaacgggat tttatttttt tgtaaaaaaa ctaatgtggt
     8281 cagcggctgt tgcatggctc ctgcagttgt catgatagga aaagcgacaa ctggtgaaac
     8341 attcattaaa aataaaacac cttgcaccat gacaaaaagc cctactccga cagaggtaag
     8401 agagccacaa actaccatag caaaaaagcc aataaccagc ttccaggaat gcaattctgt
     8461 caaatcacca cctactggca atagacgcaa ttgatgagct attaaaagaa caatgattag
     8521 ggcaaatgaa caaatcattg ccagtctaat ggcttgcttg cttaactggc taactacaaa
     8581 accacctact aacccaccaa tacaggttcc ggtaactaaa gtaagtagcg tagttaaatc
     8641 aacatctacc atgtatatga aaaataaaga ttcgatagcg ccagggagga cttgagcgcc
     8701 attatttaca gcaggtaatt catcatcacg aaaagtgcct aataattttg ccaaggctac
     8761 attaacggcg aaactgccga cccccactgt atctgcaata aaagcaataa ctccgctaca
     8821 cattaattta acatattggg agaaggatag aggcaaggaa ggctgctgaa taaattttaa
     8881 aaccattacg gccaggcaga aaaaactcaa tattagtatg caaagcgtga ttaaaaaaaa
     8941 tgccattctg ttcctaatac gaaagtaata tataatccca atgattttaa aatcaaagct
     9001 tattaaggtt tctattccaa agaaatctaa aagaaagatc ctgtttgatt atatactaat
     9061 ttctatgccc agcaaacaac actgcgagca aaaatggctc gcgatgaacc acaagagatc
     9121 accgcagttt gttggagcaa aaacttgccg ggagctgctt ttgctcccct aaataacaca
     9181 cccggctgta tcaataccta cttgaccaaa agcggactta accttattga tatcggtatt
     9241 taaatccctg gcagcataaa tgactccgca agctccattt ttaaagtctg tcgtaggagt
     9301 ccaatatttt gtgttagcaa caaccatgat gtgataagcg tttttaatac ccatatcctt
     9361 agacattagg taaaaagcct tattgaacac accgctggct gtatgaacta tgaagctctg
     9421 gcgttcttga ggaagtgcga tatgtgtatt ggcataggct actacctcat cataactgat
     9481 agcacaatag ctgccattgt tttgcgcaat acctttgtct aaacaatctg cagagcttcc
     9541 atcagaggat gggtaatcca tgaatcgcaa agctttgcca taagaatcac gaactattgt
     9601 ttcaccaata ccccatgtga cttcattggg ctgtaagtaa gctttgttat acaactgagg
     9661 atttttttcc aaaagataag ctcttgacgc ttgtcctgcc atatcagata gggattcatt
     9721 aagtgcacct gattgatcat ggtactcaag accagaatgc tgctctgtaa aaccatgagt
     9781 cacttcatga ccggctacat ctaaagaaac caatgggtaa aaatccaacc catctccaaa
     9841 tgacatggct tgtccatccc aaaaagcatt atcatagttt tgcccaaaat gaactcgcat
     9901 aaccaattgc attggagcac cattagaatg ttgtaaggca ttaagtccat accagtcttt
     9961 gtacatacca acaataacat gtccgaaata atacgcatca ttgccaggag aaaatcctcc
    10021 attaatattc tcttctatat tattgttaca aacgtattca aaaggagtat ttatcgtgtt
    10081 ttcccaatcc cattgagaat ggagattaac caacttgact tttgagtttt ccatgacgca
    10141 ttggctgcca ttttgagtca catccaaagc aggtaatcca tctttaccat accaatattc
    10201 ctgaactttc tcattacctc caggccctgt atccaaataa tttttgatat tgttccattg
    10261 cttaatcaaa gctcctgttt gagcatcaat aacaaaaaaa ggccagtctg gcttaccatc
    10321 ctgctgcacg cttttaaatg aaaccaaata aaccagcttt aattggttat tatggtctgg
    10381 ccgaatctgt aattcagctg tttcctgttg tatgttagat tgggagctaa attgaaaata
    10441 ggattttttt gcatattcct tcgcttgttg cgcactaata gccggtttcg tattaagttc
    10501 tatattttcc aataaatgcc cgttcacctc tgcattatca ttggactgca ctccagaatc
    10561 tgttccttta gtaatcatca cttgggcgcc aataacaggt attcctttat acagttgttg
    10621 ataacgaact atcatttgat tgtcttcttt tgtttgattt aatttttgca atgaattatc
    10681 aataacagca gaagaactct ttaaaataat cgcattcttt ggtgtttgta gtatagggta
    10741 tttattgatg ctattgagag gggcttgata caaatctaca ttgtcagcag caaaaatact
    10801 tgaagcagat atcgacaaaa taaaaaacat tgtttttttt aacatacaca actctcacag
    10861 gatacacaat ggcgcaaata atgtcacaaa attaaacatt atgcaatatt tatttgcata
    10921 tcctgccttg atatatgccc atttatgctc actatgcact aaaaacaacc acaaaagact
    10981 gaatcaggga ggcactgtag aagaagataa gctgggtact atgaaaaatg aaatacgccc
    11041 ctattcgtaa ttaataattt ataacagagt tctgtttgct cagacagaag actttatttc
    11101 agactctaaa ttggcgcgat aacctccagc cagttcttga tataaacgta caatgcttag
    11161 tagttcttgt aatttatcct gatttaaact gatgttgatt ttatcgagcg aaattttgct
    11221 atttaaggtt tctatataac tttgaatacc tgtctgatat aacctgtcgt tcaaattata
    11281 cgcttttgcc aaatgttttt gagccgacgc agtttgtttg agcttattgg ttaaacgctc
    11341 attttctgat aaggcattgg tcgtatctct taatgctttt tgtaaagtat caatataatt
    11401 ataataagaa accttattta cgcctttagc cttagctact gcacctaaaa caggcatatc
    11461 aataatgggg gctttcaaca attgatcatt aaatttcacc gtttttttcg gtaatgcgta
    11521 gcggctatct ccagctgcca aaccaccaat ataatctaat tgtatagtag gcaaaagatt
    11581 actttctgca acaccaattc cttcatgtga agcacgcaaa cgattttcag ctacttgcat
    11641 atcaggccga ttttcaagaa ctgttaacgg taaagaaccg ggtattaatt tacgattttt
    11701 aagttgtaat aattttttaa ctgtttttat ttcccctgga ttttggttta gtaaataccg
    11761 gagagcattg cgacttataa cgatattacg ctctgttacc tcgagttcgc cttgtatcaa
    11821 attgacctgg ctatacaact cttcctgctc aatttcagaa cttaatcctc cttggtaaac
    11881 tttactggca acctttgcca actgagttag atcattggct aatgtctgta aaaattcttt
    11941 gcgttctatt tctgcaagat aggtgaaata acttgccgct atttgagaaa taattgttag
    12001 tttgagagca tcatcttctg cttttacttg tgcaagagta tattttgctc ttttttgctc
    12061 tcttatttga ttgattatgt ttattgtata gttaggaata aaaacaatca gaacgccagg
    12121 aaaacccgtt gccggatttc ttgaataacc agtcataaga tcgagggtag gcacccactg
    12181 ataacgaatt tttttaagct caccctctgc cgcttcaatg ctccctcttg acatgccaag
    12241 gcttgtattg gaaatcaacc ctctttcaat caactggttg agagtggggt ctttaaaatc
    12301 acgccaccag gctatgtaag gaatattctt gctatcgata tttttaacat tcttgtcttt
    12361 taccgaccat ttattaatta cttcaacatg gggtctgtga taaggctcac tatagcatcc
    12421 gactaaaaag actgataata aaatgatttt aaccggacgt agcatgcttt actccctcac
    12481 taagatcaat tgtttgctcc cctgcaacaa aatcttttaa gcgcaccaaa tctttttgaa
    12541 cctgttgaaa tagttgataa taatcaaacg tatgataatg tttcgtataa taagccatat
    12601 ataaggcttt caagccaatg aaaatacgat tagccaattc cacaaactga ttaaattcat
    12661 cccctacagc atgttctgaa ctgattaaaa actgggagtt tgttatgagc ttattgacct
    12721 caaacaaact gtcagtcaat ttgatacaag cctggaacca ttctgttttc tttattttac
    12781 cctgatttag caaacgaacc agcctgtaaa gatcatcaat cacttcagcc tgagtacttt
    12841 tgataaatcg ctgcatcagt ccgtaatgcc taaaccaaaa gtattcaaag cctagaataa
    12901 tagtaaaggc gatcaacgtg caaagagtat aatcgataat aaaataggtg actgggagcg
    12961 tatcttccgt actaaagtaa ccagaaccaa gtactgacac attgaccgta aatacagtgg
    13021 gaacactgta tgctcttcct accaggaaaa acgcgaaaaa aaccattaaa ggcataatca
    13081 gaattaacgt tcgataatcc agatgaccta caaaccataa tagatatccg gtgaataagc
    13141 ctaaaagcac tcctaaaaac cgatgataag tcctgaatat ggttgttcca ttatcaaaac
    13201 cggcataaat catcatgaca gcaaagcccg tccacccggc ccgcggataa cgcaaccatt
    13261 cctggacaaa aatagtaaac gcaaagaccg tactgatctg aatagagcgc agctcaacat
    13321 aagaaaatgc ctgtactcct aaccatcggc gcataagtaa ttccagctta aaattaattg
    13381 atacaaaatt tccaactcat gcgtttcttt aaatgcaggc agctcctggt ctgagagtat
    13441 cagtggttgc ctcgctttac aggattgaca aagacgttca agataatgat gtaaaacaat
    13501 aacgtattcc ttacgcagtt gcttttgaaa agacagcaag taagacatgg tcaagattaa
    13561 ctcaaaagat aaaatggtta tctttaatat actgtagcac ttaatatttc ttggcagcat
    13621 tttggaataa cgctccatca caataatgcc cgaaaaaatg gcgatagttt tgacttctcc
    13681 cttacaaatt tttgcagata gagattccag gccggtaatg acttcgagaa aggcacgctc
    13741 ccaaatatca aaataatact ttttgggaaa aataaataat ccagcgaaga ttaccgccat
    13801 ggctgccaag gtatataaag cattattaat agcaatataa aaattgctat ctgcctccac
    13861 accataaatc agggaatagg acgccaaact tagcatcaat ggaacaataa caagcatttt
    13921 tttaaaatgg tgaagcacga ggaaataaag agccaaggta tagaaaaaaa cgaaaaaaat
    13981 aaaaagcacg ttgtatacag aaattatgcc gaataagaat atagagagta tgcttcctaa
    14041 aagggtatag agtaaaagca tgtacttctc ttttagggtt gttcccgccg cctccacagt
    14101 aaaacatgtg attggggcat aaaaataata gaaatacgga ttgtcaatgg aagaaaaaaa
    14161 gtaaaatata atcatcagtt ccaaaacaaa tactgctttt agtccattaa tacgatgttc
    14221 tttataccta tcgtaggatg cgagcttatc ttttagttga gatataaaca taagcactgg
    14281 cgccaggatt taaaggatag tcaggatcgg gatccaatat cttgatttgt aatggaaatc
    14341 gctgaggaag caacagccat tcattttgat ttgtaacaac ctgaatttga ctctttggag
    14401 cagtgctttg tcgttcagca gcccataacg agttgacaac aaccccatga aatattttgt
    14461 caaaataata catgcgtaaa atgatatacg ctttatcacc ttgacgtaca ttgcgtaagt
    14521 ccgtttcatt aaaattagcc tggatataat aatttgcagt atctataaaa gaaaacaccg
    14581 gtttatggat ctcgataggg gtatttggag aaacatacat attatctatc actccatcac
    14641 caggagctct gacaatggtt aaatcaagat taaccttggc attatccatt tttgccttaa
    14701 ggctggcgac agtatgtctt tgttgttcaa tcttggcttg caaaaccgcc acttcctgtt
    14761 gcagagcatt tcttttatta cttaaagtag aaacatcata accaagattt tttaattcaa
    14821 gaacagatac tgcttcggcc acgttcttat tttttttaag accaagagca aattgagctt
    14881 tttcaagctc agcgtccgtt gctttaatca aagcaaccgt tctttcaatc tgcttttgaa
    14941 acacgtctat tttttttaat ccttccttgt aatcagccat tgcttgctga taagccaact
    15001 cataaggaac cctgtaaacg ctaaatatag gatcgttctt ctttactttt tggccattct
    15061 ttacatagat ttctgtaata aaaccagata catcagcagc tacaggggta acattagtaa
    15121 caacaaacgc attgtcagtg aaagggatca aataggaaaa taaatgaaaa aggccaataa
    15181 taagagccaa gccaacgaca ataatgggaa gattgatgta atttttggcc tttttaaaaa
    15241 acatagggat agaataacta aagaaaaacc ggatatgttt agttactatt ttataccatg
    15301 tggcaaactt ctctttcaca atgcagcgcc tctttgatgg tgactctata atacaacatc
    15361 agtttatctc tcaaagagag aaaccccatg acaaggccct ccctttttcg gcattaaaac
    15421 taaaatacct cttttttccg ttttcgaaac aatcgagaaa gattgttggg tgactcatat
    15481 aatcggcttt ttccatcctc aggtaaataa ccccattgag attcttctgc cagcacagcc
    15541 ttggcatctg aatacccagc ttccattcgc ttcttaatga caactcggcc aaagttgtaa
    15601 tccttcgaag ccgcttttac tattcttgaa ctgtaagcca aatgaaccaa ggtacaatga
    15661 tgggggcttc caatatctaa caaatgagcg ctctccttct tttgttcatc cgttaaaata
    15721 cggcttaatt ccatcattga gtttcgcatt ttttgtctct gcaaataatt gtaaatagta
    15781 cgttgagcat gggttccata tgaaatgtct tttcttctct cttcaatttc actcatgttt
    15841 ttgggaataa acgatcgccc accaaaacaa tcaattagaa aacacaaggt attttctgca
    15901 ggaatggcct ccagaataac ttctaatggg gtgttagagt gcacaccacc atcccaatac
    15961 aattctccat cgatattaac ggcaggaaag cccggaggta aagcagcact tgccataatg
    16021 tgctccactt ctatacgata attgatatta ttaaaataga ttaaatggcc attgctgatt
    16081 tgaacagcac cgagacttaa acgaatgggg caggaattta gcaattcaaa atcaataaga
    16141 tccagcaatg tcttgcgaag aggagtcgta tcataatagc tcagagtcgt tggatcaccc
    16201 cataaaggaa ttgttccggt gcaccatttt ggaaaaaaaa actcaggctg gccaaataat
    16261 aaagcacaag cggcacttaa tttattataa aaatctaaag tgatatcaga ttcacctaaa
    16321 aaatcgaaaa aattacccgg ggcaatttca tcccaaaatc tttcgagttt ttcaacacgc
    16381 ttttctggag gatttcctac aataatcgct gcttgtatgg caccaataga ggttgctgca
    16441 atccagtccg gttcataccc ggcttcaaga agccctttaa ccacaccaaa ttgataggct
    16501 cccaaagagc caccgccttg cagcacataa gccacacggg ggaaacgtcc ttgatccttg
    16561 aggggtaagt tatcaaagcg attggcataa ggattattac cgtgcggttt aggctccact
    16621 tccaaactca taaaaactcc tttttcactt tagttgatca tcgcatcctg gctgaaatgt
    16681 tgggaatact tgctgccgct taataacact gttcaaaatc agattgatat atacattgtt
    16741 attaaataac gtgagttatg gattacgatt atataagaag ctgtcgatat ccagggttcg
    16801 ttcgggctga ggagatgcgt aagcatcgtc tcgaagcctt ggcaagaaac attaaattcc
    16861 atacaaggct ttgagacggc ataaatgcct cctcagcccg aacgattcaa gataaagtat
    16921 ccataactca cgttaaataa gtttcgcaga aatcataagt gtttaatcat tcacattgta
    16981 ctcataatcc tttgagcaac caagataata tatgaagatc attccgaata gttttaatta
    17041 tccggctaaa atcaacacaa taagcaacta aaaatgtcct gtacgaaaat catgtattgc
    17101 ctgcataatt tcttcttgag tattcattac aaaaggacca tagcgaacaa taggttcatg
    17161 aagtttagcc gcagctatca gtaaacaatg atttctattt tctttgtctt tgccttctat
    17221 ttgtattctt tcaccgtttg tcaggctggc taaagtccct gcggtaattt gctgtcctcc
    17281 tgtattcacg gtaccttcaa tgacaaaaag gacagcttga taatcatcag gaatcgtttg
    17341 ttgaatagtt gcattggcag ggagagtgat gtctagaaac aaaggtcggg tcgcaatttc
    17401 aacaatgggt gaactcaatc cttgatcaat tcttcctgct attactttga tggttgcacc
    17461 tgattccatg acttcaatag gtagttgatc cgatgatttt tcctgataac gaggttctcg
    17521 ccatttttct gcagcaggca aatttaacca caactgcaaa ccatgcaacc ggtccgttga
    17581 agacgaaggc atttccgaat gaataatccc ttttcctgca gtcatccact gcacaccacc
    17641 tgcgtttatt actcctttgt tacctttatt gtcttcatgg gtaatgcttc cctccatcag
    17701 ataggtaatt gtttcaaatc cgcgatgcgg atgaggcgga aacccggcga gataatccaa
    17761 tggatctgaa ctgtcaaaat agtcaaaaag cagtataggt tcaaagtgat tggttttatc
    17821 agctcctata tagcgacgta atttaactcc tccaccatct cgtattaatg ttccctggat
    17881 taactgctct acttccattg ctttcatctt aattaccaat ta
//
LOCUS       DACVWI010000050        17884 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.050, whole genome shotgun sequence.
ACCESSION   DACVWI010000050 DACVWI010000000
VERSION     DACVWI010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 17884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17884
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.050"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(380..619)
                     /locus_tag="JBH85_06295"
     CDS             complement(380..619)
                     /locus_tag="JBH85_06295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HAU0945809.1"
                     /translation="MRMSQRETGHVKWFNEKKGFGFIVNQKGEDIFVHYKDIQGVGFK
                     TLHENDPVTFELDRGPKGLKAQNVVVASESVHTEE"
     gene            862..1494
                     /gene="pyrE"
                     /locus_tag="JBH85_06300"
     CDS             862..1494
                     /gene="pyrE"
                     /locus_tag="JBH85_06300"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HAU0945810.1"
                     /translation="MNHTKSSFIKLALECQVLKFGEFTLKSGRISPYFFNAGLFYHGD
                     SLRKLGQFYAKTLLEQEVSFEHLFGPAYKGIPLATATAVALAELGRDITVTFNRKEVK
                     THGEGGQLIGSPLTGRTVIIDDVITAGTAFRESQTLIKENGGILRGVIIALDRCERGL
                     TEKSTLSEIREQGIEVYSIINLFDLIEFLKNDNQYEQVQKLESYQERYGA"
     gene            complement(1607..1708)
                     /gene="cydX"
                     /locus_tag="JBH85_06305"
     CDS             complement(1607..1708)
                     /gene="cydX"
                     /locus_tag="JBH85_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006871302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HAU0945811.1"
                     /translation="MWYFSWILGTGLACVFAVLNAVWLELREEDVKQ"
     gene            complement(1720..2856)
                     /gene="cydB"
                     /locus_tag="JBH85_06310"
     CDS             complement(1720..2856)
                     /gene="cydB"
                     /locus_tag="JBH85_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HAU0945812.1"
                     /translation="MPLDYETLRIIWWLLIGILLIGFAIMDGFDLGVAMWLPWLGRTD
                     IERRILINSIGPTWEGNQVWFILGGGAIFAAWPTLYALSFSGFYLAMLVVLLALILRP
                     VGFKYRSKLDNPIWRAFWDWALFIGGFVPALIFGVAVGNVIQGVPFYFDESLRVFYTG
                     SFFELLNPFALGCGLLSVLMLAMHGAFFIQVKTVGTLQNKAKDRARWSALLVIFLFIG
                     LGAWVYYGIDGYVLKGTVPHDGPSNPSYKDVIIQAGAWFNNYKEYPVSLLVPVLCIIS
                     AFLAIIFANKSVLAFVLSGLSVGTLIATVGVSMFPFILPSSSNPKYSLIVWDSSSSQV
                     TLFIMLVATVLLLPIVLAYTAWVYRVLRGKVTESSIKAEQDSAY"
     gene            complement(2872..4404)
                     /locus_tag="JBH85_06315"
     CDS             complement(2872..4404)
                     /locus_tag="JBH85_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095233.1"
                     /note="part of the aerobic respiratory chain; catalyzes
                     the ubiquinol to ubiquinone; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I ubiquinol oxidase subunit CydA"
                     /protein_id="HAU0945813.1"
                     /translation="MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYV
                     MTGRDLWKKMVKYWGVLFGINFVLGVATGLTMEFQFGTNWAYYSHYVGDVFGAPLAIE
                     GLMAFFLEATFVGLFFFGWNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGA
                     YFDYQTMRMEVSSFYEMLFNPVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAF
                     AKRSMTVAVSFGLASALSVVVLGDESGYVANENQKMKLATMEAMWHTEKAPANLTVFG
                     IPDEKTLTTKYAIDIPYALGIIATRSFNTPLQGIIELIEEGKLKIKDGMIAYDALKVL
                     QKDPKNEQAKAVFTKHSENLGYALLLKKYTENVTDATEEQINQAANDLKPKVLPMFFS
                     FRIMVACGIYFILLFATGFYLSVRHRLEKTSWYHRVAFYSLPLPWIAAELGWIVAEYG
                     RQPWVVEGILPTFMGASSLTSGQVMTSIAGFVLFYTVLAIVEIYLMVKYIRLGPDGMN
                     HH"
     gene            4780..5076
                     /locus_tag="JBH85_06320"
     CDS             4780..5076
                     /locus_tag="JBH85_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAU0945814.1"
                     /translation="MKIHGSFKKSALPNLMQAISLLKNEDEAMQFFTDLCTPAELESM
                     ADRWQIVPLLRQGIPYRTIHEETGVSVTTITRVARCLSFGTGGYRLIAERLEKL"
     gene            5073..5954
                     /locus_tag="JBH85_06325"
     CDS             5073..5954
                     /locus_tag="JBH85_06325"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010653961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HAU0945815.1"
                     /translation="MKNRLRLALQKKGRLSDESLNLLQRCGLKFRIKPNALLTHVDNF
                     PIDLLFVRDDDIPTLVFDSLCDGGIVGENVLLEASFNRPDKAYRKILALGSCTCRLSI
                     AVPEAFDYQGAGSLDGRRVATSYPNLLNNYLAERKISAEILTLSGSVEVAPRMGMADV
                     ICDLVSTGQTLEDNKLKEVDTVLNSQAVFIQTQRQLDPDMQELFAMLARRIQAVQQAQ
                     ERKYIVFHAPKAALERIAQKLPGAESPTILPLPGNNEKVAVHVVSSEGVFWNTLETIQ
                     YLGASSILVLPIEKMLE"
     gene            5960..7255
                     /gene="hisD"
                     /locus_tag="JBH85_06330"
     CDS             5960..7255
                     /gene="hisD"
                     /locus_tag="JBH85_06330"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HAU0945816.1"
                     /translation="MLTIKNWQLLSENDKRRCLSRPRDNSAIKENVLEIINQVQLSGD
                     KALYDLTKRFDRVNLQYLQISQEKIRQASIPQNALIAIKQAIETISSYHQSLLPENTE
                     ISTASGITIRNVYRPIQKVGLYVPGGNKTPLVSSLLMQAIPAKVAGCPIKVLCTPPDA
                     EGEINEHILVAARLCGIDTIYAIGGAQAIAAMAYGTESVIKVDKIFGPGNSYVTQAKT
                     LVAIDADGAAIDMPAGPSEVMIIADTEANPEFIAADLLAQAEHGPDSQVILICDECEL
                     ANQVNQQLEIQMRYLSRIEFIKQSLANSRIIICSNQSEQLDIINSYAPEHLIINRKNP
                     EPWVEKIVAAGTVFLGSWAAETMGDYVTGSNHVLPTSGFARNHSGLSTLDFMTRFTVQ
                     AINQEAIRNLGPAAMTLAELEGLDAHANAVQIRLNTLGD"
     gene            7256..8350
                     /gene="hisC"
                     /locus_tag="JBH85_06335"
     CDS             7256..8350
                     /gene="hisC"
                     /locus_tag="JBH85_06335"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HAU0945817.1"
                     /translation="MSILNLVRADLLNSKNYVPGGESARYRSHANELPWSPVTMGEHN
                     LNYYPNIGLQIELQKQLAKRYQIYSDQIILTRGSDDGIDLTTRLFLTAGKDAFMQFPP
                     TFPMYAFYVRLQQAELIECPLDRRTNFRLTLDQIENSWKPNCKIIMFCSPNNPTGNLV
                     DLNLIAKTCELYANQSIIVVDEAYIEFANAPSATSLIGEFENLIVLRTLSKAFGLAGL
                     RLGCIIAQSPIIQAFNKIIAPYSIATPSMELAKRALNNSDWFTKTIEQIKSSRAWVIK
                     KFADNPIIEKIYPTETNFILIQTRFSKQLTTWLAHYGIAVRDFPSSSLLHDHLRITVG
                     HDEQNQLLINTLSSFNADVAGLNYEKDFIY"
     gene            8328..9386
                     /gene="hisB"
                     /locus_tag="JBH85_06340"
     CDS             8328..9386
                     /gene="hisB"
                     /locus_tag="JBH85_06340"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HAU0945818.1"
                     /translation="MKKILFIDRDGTLVEEPFDFQVDSLDKIKLTSGVIPALLQLQKA
                     GFTFIMVSNQNGIGTVAFPEEDFAVCHEFILDLFSSQGILFDEIFICPHTPENNCICR
                     KPKTGLLEPYLKETVFAKQYSWVIGDRDTDKEFADNLGVNFLPISKTHTWEMVASAII
                     NDARKASVQRKTKETTIDLSVQLDSDQTSVIDTPIPFFTHMLEQVAKHGGFDLRLQAS
                     GDLEVDEHHLIEDTAIALGEAIRTALGDKWGINRYGYTLPMDESLATIAIDISGRSFC
                     DFKGQFTREFIGGMATEMIPHFFQSLSSALGATIHIEVTGTNHHHMIEACFKVLGRAL
                     RQACSRTNNYLPSTKGVL"
     gene            9383..9982
                     /gene="hisH"
                     /locus_tag="JBH85_06345"
     CDS             9383..9982
                     /gene="hisH"
                     /locus_tag="JBH85_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HAU0945819.1"
                     /translation="MIAVIDVSGNNLTSLTNALIRLGGHFALTHDAEEIQKASHVILP
                     GVGTARSGMTALQQNGLIDVLRTLTQPLLGICLGMQLLLEYSEEDDIPCLGLIPGVAE
                     LLKAERNHPVPHMGWNNLHWQKTSSLQQGLNNSDYVYFVHSYALKADNYALARCQYHE
                     EFTAVVKKGNFYGMQFHPEKSANVGMVLLNNFLSLESTC"
     gene            9976..10695
                     /gene="hisA"
                     /locus_tag="JBH85_06350"
     CDS             9976..10695
                     /gene="hisA"
                     /locus_tag="JBH85_06350"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HAU0945820.1"
                     /translation="MLVIPAIDLQSGRCVRLKQGRFDQVTQFSVFPIERALHFAKLGA
                     KRLHVVDLDGARSGKMQQLELICSMQKTGIPIQAGGGIRSIEQALECSNAGISQLVIG
                     SLAITNPDLTIQIIEKIKPENIVLALDVRVDTKVPLLAINGWQNNSTSSLWEVVSYYE
                     NYGIKNILCTDIACDGMMNGPNFDLYQQAVEYFPQIAWQASGGVRHMQDITTLNSLGI
                     SAVILGLMLYQDHMNLEELLC"
     gene            10689..11456
                     /gene="hisF"
                     /locus_tag="JBH85_06355"
     CDS             10689..11456
                     /gene="hisF"
                     /locus_tag="JBH85_06355"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HAU0945821.1"
                     /translation="MLTKRIIPCLDVRDNQVVKGVKFRNHRIIGEILPLAAHYSASGA
                     DELVFYDITASSDDRSVCPDWVNKVAATINIPFTVAGGIRTLHQARLILNAGADKISI
                     NSPALENPSLINELSKEFGKQCMVIGVDSQWIVDDYYVYQYTGNENKSINSKRKTREW
                     IYEIQDRGAGEIVLNCMQSDGVRMGYDIAQLSEMINLCHVPLIASGGAGKIDDFVEVF
                     KKSHVSGALAASVFHDKILAINDIKLALQTENIEVRL"
     gene            11453..12076
                     /locus_tag="JBH85_06360"
     CDS             11453..12076
                     /locus_tag="JBH85_06360"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HAU0945822.1"
                     /translation="MSDLDINSLDWQKMNGLLPAIIQNAENGKVLMLGYMNQEALIAT
                     LTTGQLTLYSRSRKRLWRKGESSGNSMALQHISADCDNDSLLIQVIPKGPACHLGYST
                     CYQPHNNYTLGFLDGLIELINERAEEKNPNSYTAQLLDSGVNRCAQKLGEESVETVIA
                     AVSNNKEELINEASDLIYHLLVLLKACELSFYDVLLCLQARDRSVHT"
     gene            complement(12165..12920)
                     /locus_tag="JBH85_06365"
     CDS             complement(12165..12920)
                     /locus_tag="JBH85_06365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HAU0945823.1"
                     /translation="MGFFRLRWHCMKNALKREDAANKKLGVLIYENVQPMDVIGPWEV
                     FATWKTILDASIDMFLVAESSNEVCCANQISLKPHCEFNNSPQFDYLLVPGGAGRREQ
                     VNNPRLISFLKKQAQNTDYLLSVCTGAFLLHAAGLLTHHEATTYWRAMPELKSFEDVQ
                     LVEKRIVKSGKVWTTGGISSGIDLAFEFISTIAGNDVAGKIQLLFEYFPECKLYSQPA
                     MVSELPSYYATKKDEAVLEMNLPDYIKEYFKKS"
     gene            complement(13030..14217)
                     /locus_tag="JBH85_06370"
     CDS             complement(13030..14217)
                     /locus_tag="JBH85_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HAU0945824.1"
                     /translation="MAHIAIEKIKHFLMSLALKIKSIILSFFLVLVTTVACATQVSLR
                     DKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILFDFNQQSQTFDKNIESPEQVNR
                     LNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLE
                     RADASAELMANTLKSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLY
                     TEQFIKHQIHCSYKHFPGHGSSLSDSHLGFVDISDTWSEQELIPFLQLLSQPNHCDMV
                     MIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGVVITDDMQMKAITNYYGLETAV
                     TLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRS
                     FNY"
     gene            complement(14303..15475)
                     /locus_tag="JBH85_06375"
     CDS             complement(14303..15475)
                     /locus_tag="JBH85_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HAU0945825.1"
                     /translation="MKAKVILVSGKQNTVLRGHPWIFPKAIAQYSGKLITGELVEIIG
                     SEGESLGFGAYNEHSLYRVRVLALSNEQINSFDYKSLITHRIKQASLVRRCLDLPNEQ
                     TNAYRLFNSEADGLSGLTIDCFNDYCVIASSAYWVELNKSIIVHVLQELLPHNHIIWL
                     PQNKPLSQDGWKEIHTEKSQGSTQVLEEGVLYHVEFAQTQKTGLFLDQRENHKRIAKL
                     SRGKRVLDLYTFTGGFALHAAKAGALHVTAVDSSVQAIEQAKNNAVLNHLNTIEFIKA
                     DAREYLKMAGEYDVVILDPPKLVPSQKHLQQAKNYYRFLHREAFKYMKPGSLLMTCNC
                     SSALSSQDFCSLVSAQAVAMGKQARILGVYGPASCHPTLAAFPEGNYLTAILLALV"
     gene            15535..16536
                     /locus_tag="JBH85_06380"
     CDS             15535..16536
                     /locus_tag="JBH85_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945826.1"
                     /translation="MERRTNMRQFTKYLTIFLFSSSVSVAYAGPWFTGPLLAPAGHTV
                     PKGHTNLEVYGIDVFTDGQYNASGQRISTPKFKTFAANPILTHGFTDWLDVQLTVPYL
                     FNSTRGVHENHLADVSTALGIQILEQKGSPKRIDFRVLLQETIPTGRYDQLNPALLGT
                     DATGLGSYQTLVGLDFQYLLQVFKTHYLRTRFIASRLFSSNVHIDGLSSYGGSINTHG
                     TVKPGIENNLDLAFEFTLTQHWVAVMEGYIATGKATRFNGILNFNNIGSPPVNVSDLD
                     AAPVVIGNASFREEALAPAIEYNFNENIGVIGGVWFPVSGINTSHYMTYVLAINAFW"
     gene            16543..>17884
                     /locus_tag="JBH85_06385"
     CDS             16543..>17884
                     /locus_tag="JBH85_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HAU0945827.1"
                     /translation="MRYSSYEMKKNRFTYGLALGALGVVFGDIGTSPLYALKVTLSGI
                     PINQFNILGVLSLIFWSLIIIVSFKYLMIIFRADNDGEGGILALLALMKHKSTKYQPL
                     FYIVAIFGAGLLLGDGMLTPAISVVSAVEGLGTLSDKLYPYVLPIASVILVLLFSLQA
                     KGTARIGYLFGPLILIWFITIAILGILQIVEHPVVLQAINPYHAIAFLVDEGLRGYFL
                     LGGIFLVVTGGEALFADIGHFGKNPIRFSWFFIALPCLLLNYFGQGANLIVRPEEISN
                     PFFMIAPPWFYLPLIIIATVATVIASQAVISATFSLTKQAVLLGLCPKIPIVQTSMLH
                     SGQIYVPQINFILFIGTMAFCLAFKTSDNLAHAYGIAVNLEMLLVDAMVAYAAVSIWR
                     WSTFNVIFLFGLFLLIDLAFLGANTHKFITGGWVPIVLAFFIAFIMYSWRYGLEY"
BASE COUNT         5603 a         3648 c         3319 g         5314 t
ORIGIN      
        1 aaccaaacta aaaaatggta taaaaaatga attgagttga catacaaata ctttatatct
       61 gagaaactta atgagcatat aacaacagga gactgatgct ttttgggggg attgcatacg
      121 tggataagcc taagagttcg acgctgcact ccgaagcaag atcgcttcag accattctct
      181 ttaacttaca ctcgtcctca agtcagccac cttctccatt cattttagat ttggaacagc
      241 tgtacttttt gactcggcag tagactataa aattaccgga ttttatgtca aactctcagg
      301 tttctataaa catgctctta agtactttaa cgaggcttta aaaaataaag cgtagcctca
      361 ccagataaaa tcatctggct tattcttctg tgtgtactga ttcgctagcc actaccacat
      421 tttgtgcttt caaaccctta ggtcctcgat caagttcaaa ggtgactgga tcattttcat
      481 gcagcgtttt aaaaccaact ccctgaatgt ctttgtaatg cacgaaaata tcttcgcctt
      541 tttgattaac aataaaacca aatccttttt tttcattaaa ccatttaaca tggcctgttt
      601 ctctttgcga cattcgcatt tcccctttga cttacacaga tacatcaaaa ttgttatttg
      661 aataaataaa agttcacttt agcgcaactt aaagtgaaaa aataaatcac tccctaataa
      721 ggaatttacg ctataataaa cccttttcca tgcaaggata aatcctgcac tatgattagc
      781 atatcagttt tttgttgatt gttaaggatt tttttaaaat atgtgattgt tttcaataaa
      841 attttgtatt aggaaaccag aatgaatcat accaaatcat cttttataaa attagctctg
      901 gagtgtcaag tacttaaatt tggtgaattt actttaaaat caggacgaat aagtccctat
      961 ttctttaacg ctggtttatt ttatcacggt gattccttac gtaagttagg tcaattttat
     1021 gcaaaaaccc ttttagaaca agaagtttct tttgagcact tgtttggacc agcgtacaaa
     1081 ggtatcccac tcgctaccgc aactgcagtg gccttggctg agttaggcag ggacattaca
     1141 gtgactttta atcgtaaaga agtaaaaact catggagaag gcggacaatt aattggttcg
     1201 ccgctaacag gaaggacagt gatcattgac gatgtgatta cagcgggcac agcattcaga
     1261 gaatcacaaa ccctgattaa agagaatgga gggattcttc gtggtgtcat tatcgctctg
     1321 gacagatgcg aacgaggatt aactgagaaa tcaaccctgt cagaaatcag ggagcaagga
     1381 attgaagtct attcaattat caatttgttt gatctaatag aatttctgaa aaatgacaat
     1441 caatacgaac aggtacaaaa actggagtcc tatcaagagc gttatggcgc ataatattag
     1501 gattacagat tttccttaaa aaagagtaag acaatcatca ctcattgtgt tttcagttgc
     1561 tgagctatcc atgaagatca gcaacttaca ctgagattgc ctccgtctat tgcttgacgt
     1621 cttcttctct aagttccaac catactgcat taagcaccgc gaacacacaa gccagtcctg
     1681 tgcccaaaat ccaggagaaa taccacatag aaaaacctcc taatacgcag aatcttgctc
     1741 tgctttaata gaactttcag ttaccttacc tcgtaatact cgataaaccc aagccgtgta
     1801 tgcaagcaca ataggcaata ataataccgt tgccactaac ataataaaca aagtaacctg
     1861 gctggaagag ctatcccaaa cgatcaaact gtatttagga tttgaagaag agggtaatat
     1921 gaaaggaaac atactaaccc ctaccgttgc aatcaaagta ccaacgctca atccgctcag
     1981 cacaaaagcc aacacacttt tattcgcaaa aataatcgct aaaaaagcgg atattatgca
     2041 taaaacaggc actaaaagtg atactggata ctctttataa ttattaaacc atgctccggc
     2101 ttgaataatg acgtccttgt aagaaggatt tgatggccca tcatggggaa ctgttccttt
     2161 taaaacataa ccatcaatac cataataaac ccaagcccct aatccaataa ataaaaaaat
     2221 aaccaaaaga gcactccagc gagccctgtc ttttgcttta ttttgcaaag tccctacagt
     2281 ttttacttga ataaaaaaag caccatgcat ggcaagcata agcacagata ataatccaca
     2341 ccctaaagca aacggattga gtaattcaaa aaaacttccc gtatagaata ctcttaaact
     2401 ctcatcaaaa taaaatggaa caccttgtat gacatttcca accgctaccc caaagattaa
     2461 agccggaaca aatccaccga tgaataaagc ccaatcccaa aatgctctcc atatggggtt
     2521 atccagcttt gatctgtatt taaagccaac gggtcttaaa atcaacgcca aaagaacaac
     2581 cagcatagcc aagtaaaaac ctgagaaaga taaggcatag agagtaggcc aagccgcaaa
     2641 aatagcgcct ccgcccagta taaaccaaac ctggttaccc tcccatgttg ggccaatgct
     2701 gttaattaat atccgtctct caatatctgt tctacctaac cagggaagcc acattgccac
     2761 accaaggtca aatccatcca taatggcaaa gccaataagc aaaataccta ttaacaacca
     2821 ccaaattatt ctgagtgttt cataatccaa aggcatttga ttctcctttc atcaatgatg
     2881 attcatacca tctgggccaa gacgtatgta tttgaccatc aagtaaatct caacaattgc
     2941 aagaacagta taaaacaata caaaacctgc gattgaagtc attacttgtc ctgatgttaa
     3001 agaggaggcc cccataaaag taggcagaat accctcaaca acccagggtt gacggccata
     3061 ttctgctact atccacccta attcagcagc tatccaaggt aaaggcaaag agtaaaatgc
     3121 aaccctgtgg taccaagatg ttttttccaa tcgatgtctt acagacaaat aaaaaccggt
     3181 tgcgaaaaga agtataaaat atatcccaca agcaaccata attctaaatg agaagaacat
     3241 tggcaggact ttaggtttga gatcgttcgc cgcttgattt atttgctcct cagtagcatc
     3301 cgtcacattc tcagtatact tcttaagcaa taaagcataa ccaagatttt cgctatgttt
     3361 tgtaaaaaca gccttggctt gttcgttctt tggatctttc tgaagaactt tcaatgcatc
     3421 gtatgcaatc atcccatctt tgatttttaa ttttccttcc tcaattaatt caataatacc
     3481 ttgtaaaggg gtattaaacg aacgcgtggc aataatacca agggcataag gaatatctat
     3541 tgcatatttt gtcgttagag tcttctcatc tggtattcca aaaacagtca aattggcggg
     3601 agctttctcg gtatgccaca tcgcctccat agtagccaac ttcatttttt ggttttcatt
     3661 ggcaacataa ccgctctcat cgcccagtac cacaacagac aatgccgaag ccaaaccaaa
     3721 agaaactgcg accgtcattg agcgtttggc aaacgcttta tttcgccccc gcaaaagaaa
     3781 ataggcgctt atggataaga caaacatggc tcctgttaca tatcccgcac tgatggtatg
     3841 cacaaacttg gcctgagcaa caggattaaa cagcatttcg tagaaactgc taacctccat
     3901 tctcatcgtt tggtaatcaa aataggcgcc tacaggatgt tgcatccaac cattagcaat
     3961 taaaatccac aatgctgaaa gattagtgcc taaagctaat aaccatgttg aggtcagatg
     4021 ctgcaatttt gacaatctat tccagccaaa gaaaaataaa cccacaaagg tagcttccag
     4081 aaaaaaggcc attagccctt cgatcgccag tggagcacca aatacatctc ccacataatg
     4141 tgaatagtaa gcccagttag taccaaactg gaattccata gtcagaccgg ttgcaactcc
     4201 caaaacaaaa ttaatcccaa acaaaacacc ccagtatttg accattttct tccagagatc
     4261 acggccagtc attacataaa ctgtctccat gatagctaac ataaccgata accccagcgt
     4321 aaggggtaca aatagaaaat gatatagtgc agttaatgca aattgtaacc ttgataaatc
     4381 aacaacttca gcagctggaa tcataaaact acctcttgtt atttggggta agtactgttt
     4441 gttcttcttt tcctaacaac cattctttat tactagacaa ctcaggatgc attcctctga
     4501 cacagaaata ccataataaa acgagcaata tcattttaaa tgaaagggta aatacaatat
     4561 ctctggtaag tggtttcatg acatttcctc aggatttatc atatcgacag tctctgataa
     4621 aaatatttac ttctgccttt tgattttcag tcaatccagt ttcccggaaa gagacctgta
     4681 tactctaccc catccagaat tttttttcac taaattattg acaatgctaa agataatcat
     4741 tatcatcatt aaaatgttac aatacgttaa tacattaaca tgaaaataca cggatctttt
     4801 aaaaaatctg cgctgcctaa tttgatgcaa gctatcagct tgcttaaaaa cgaagacgaa
     4861 gccatgcagt tttttacaga cttatgtact cctgctgaac tagaatctat ggctgatcga
     4921 tggcaaatag ttcctttgct acgccagggc atcccataca gaacgattca tgaagaaaca
     4981 ggggtcagtg taacaaccat cacgcgagtt gcgcgttgtt taagctttgg tacaggcggt
     5041 tatcgtttaa tagccgaaag attggagaag ttgtgaaaaa tcgtttacgt ctggccttac
     5101 aaaaaaaagg ccgattatca gatgaatctt taaatctcct acaacgctgt ggtttaaagt
     5161 ttcgtattaa accaaacgca ttattaactc atgttgataa ttttccaatc gatttactat
     5221 ttgttcgcga tgatgacatc cctactctcg tattcgacag tttatgtgat ggtggcatcg
     5281 tgggagaaaa tgtgctgctg gaagcttctt ttaacagacc agacaaagcc tatagaaaaa
     5341 tattggcatt aggcagttgt acttgtcgtt tatcgatagc agtaccagaa gcattcgact
     5401 atcaaggagc cggtagtttg gatgggaggc gagttgcaac cagctatcca aatttactca
     5461 acaattatct tgctgaacga aaaattagtg cggaaattct gaccttatcc ggctcggttg
     5521 aggtagcgcc acgaatggga atggctgacg tcatatgcga tttggtatct acaggccaaa
     5581 cactcgaaga taataaactc aaagaagttg atactgttct caacagccag gccgtcttta
     5641 ttcaaactca gaggcaattg gatcctgata tgcaagagtt gtttgccatg cttgccagaa
     5701 gaatacaggc tgtccagcaa gctcaggaaa gaaaatacat tgtttttcac gcgcccaagg
     5761 ccgcccttga gcgaattgct caaaaattac caggagctga atcaccaacc attctcccat
     5821 tacccggaaa taatgaaaag gttgccgtgc acgtagtctc cagtgaaggt gtgttttgga
     5881 atactttaga gactatccaa tatttaggtg ccagctccat ccttgtatta cctattgaaa
     5941 agatgctgga gtaattcata tgctaacgat aaaaaactgg caattactgt ctgagaacga
     6001 taaaaggcga tgcctttcaa ggccacgaga caattctgca ataaaggaaa atgtgctgga
     6061 aattataaat caggtccaat tatcaggaga taaagcactt tacgatttaa ccaaacggtt
     6121 tgatagagtc aatttacaat atttacagat ctcacaggaa aaaattagac aagccagcat
     6181 accgcaaaat gccttaatcg ccataaaaca agccattgaa acaatctcgt catatcacca
     6241 gtctttgttg cctgaaaata ccgagatttc gactgcatca ggaattacaa tccgcaatgt
     6301 ctacagacca atccaaaaag ttggcttgta tgtgcctgga ggaaataaaa cacctttagt
     6361 ttcttcgctt ctcatgcaag caattccggc aaaggtagcg ggctgcccaa taaaagtgct
     6421 ttgtactccc cctgatgcag aaggggaaat taacgagcat atcctggtag ctgcaagatt
     6481 atgtggcatc gacacaattt acgctatagg tggagctcaa gccatagcgg ctatggctta
     6541 tggcactgaa agtgtcatca aagtggataa aatattcggg ccgggtaata gctatgtcac
     6601 tcaggcaaaa actttagttg caattgacgc cgacggagct gcgattgaca tgcccgctgg
     6661 gccatctgaa gtgatgatta ttgcagatac tgaggcaaac cctgaattta ttgctgcaga
     6721 tttattagcc caggctgaac atggcccgga ttcacaggtt attttaattt gtgatgaatg
     6781 tgaattggca aaccaggtta atcaacagct ggaaattcag atgagatatt tgtcaagaat
     6841 agaatttatc aaacaatctc tcgcgaatag caggataatt atctgttcta atcaatcgga
     6901 acagctggat attatcaact cctacgctcc ggaacacctg atcattaaca gaaaaaaccc
     6961 cgaaccatgg gttgagaaaa tcgtggctgc cggaacagta tttcttggct cttgggccgc
     7021 agaaacaatg ggtgattatg taacaggaag caatcacgtc ttacctacca gtggttttgc
     7081 cagaaaccat agcgggcttt ctactcttga ttttatgaca cgatttaccg tgcaagccat
     7141 aaatcaagag gctatccgta atttaggtcc agcggcaatg actttagcgg aattagaggg
     7201 tttggatgct catgccaatg ccgttcaaat aagactcaat actctggggg attaaatgtc
     7261 catactcaat cttgttcgtg cagatctatt aaatagtaaa aattatgtcc ccggtggtga
     7321 gagtgctcgc tatcgatcac atgccaatga actgccttgg tcaccagtta ctatggggga
     7381 gcacaattta aattattacc caaacattgg cttacaaata gagctgcaaa agcaattggc
     7441 aaaacgttat caaatctatt ccgatcaaat catactgacc agaggaagtg atgatggcat
     7501 tgatttgaca accagacttt ttctaaccgc cggaaaagac gctttcatgc aatttccccc
     7561 tacttttcct atgtacgctt tttatgttcg gctacaacaa gcagaattga tcgaatgtcc
     7621 tttggataga aggactaatt ttcgcctcac cctggatcaa attgaaaata gctggaaacc
     7681 aaactgcaaa attatcatgt tttgtagtcc caataacccg actggtaatt tggtggattt
     7741 aaatttaatt gccaagacat gtgaactgta tgcgaatcaa tctattatag ttgtggacga
     7801 ggcgtatata gagtttgcaa atgcaccaag cgctacgtcc ttaattggag agtttgaaaa
     7861 tctgattgtc ttaagaaccc tgtcgaaagc ctttgggctg gctggattac gtttaggctg
     7921 cattatagcc cagagtccta ttattcaagc ttttaataaa atcattgccc cctattccat
     7981 tgccactcct agtatggagc tggctaaaag agctttgaat aatagcgatt ggttcacaaa
     8041 aactattgag caaatcaaat catctcgtgc ctgggttata aaaaaatttg ccgataatcc
     8101 aatcattgaa aaaatttatc ctactgaaac caatttcatt ctcattcaaa cacgattttc
     8161 aaaacaatta accacttggc ttgcccatta tggcatcgca gtaagagatt ttccttcgtc
     8221 ctctttattg catgatcacc ttcgtattac ggtgggtcat gatgagcaaa atcaattatt
     8281 gattaatacc ttatcctcat ttaacgctga tgtagcagga ttaaattatg aaaaagattt
     8341 tatttattga ccgcgatggc accttagttg aagaaccctt tgattttcaa gtagattctc
     8401 tggataaaat taaattaact tctggagtaa taccagccct attgcaatta caaaaagctg
     8461 gctttacctt cattatggta tccaatcaaa atggcatagg aaccgtagct tttccagaag
     8521 aggattttgc tgtttgccat gaatttatcc tggatctctt ttcctctcaa gggattcttt
     8581 ttgatgagat ttttatatgc cctcacaccc cagaaaacaa ttgtatttgt agaaaaccta
     8641 aaactggctt gctcgaacct tacttaaaag aaacagtatt tgccaaacaa tattcatggg
     8701 taattggcga ccgggatact gataaagagt ttgctgataa tctgggcgtt aatttcttgc
     8761 ccatttcgaa aacacatact tgggaaatgg tggcttctgc aattatcaac gatgctcgca
     8821 aagcgtctgt gcaaagaaaa acaaaagaga cgacaataga tttgtcagtt caactggata
     8881 gcgatcaaac cagtgttata gacaccccta tccctttctt cactcacatg ttggaacaag
     8941 tagcaaagca cgggggcttt gatttacgat tacaagcttc cggagatttg gaagtagatg
     9001 agcaccactt gattgaggat acagccattg cattggggga agcaattaga acagcgctgg
     9061 gtgacaaatg gggaattaat cgttacggtt atacccttcc tatggatgaa tcattagcta
     9121 ccattgcaat cgatattagc ggcagaagtt tttgtgactt caaaggtcag tttactcgtg
     9181 aatttattgg cggtatggca acagaaatga tccctcactt tttccaatcg ctatcgagcg
     9241 cgttgggggc aactatccat atcgaggtaa caggcaccaa tcatcaccac atgatcgaag
     9301 catgcttcaa agttttaggt agagccttgc gacaggcatg ctcaagaacg aataattatc
     9361 taccttcaac caagggtgta ttatgattgc tgtgattgat gtcagtggga ataatttaac
     9421 ttctctgaca aatgccttga ttcgattggg agggcatttt gcactgaccc atgatgctga
     9481 agaaatacaa aaagcaagcc atgtcatttt gccaggggtt ggaacagcac gttctggtat
     9541 gacagctttg cagcaaaatg ggctaataga cgttttaaga accttaaccc aaccacttct
     9601 tggcatctgt cttggaatgc aattattgct tgaatacagc gaagaagacg acataccctg
     9661 cctgggtttg attcctggag ttgcagagtt attaaaagct gaaagaaatc atcctgttcc
     9721 tcatatggga tggaacaatc ttcattggca aaaaacatca tcattacaac aaggattaaa
     9781 taatagtgat tatgtttatt ttgttcatag ctatgctcta aaagcagata attatgcatt
     9841 agctcgatgt cagtatcatg aagagttcac tgcagttgta aaaaaaggta atttttatgg
     9901 tatgcaattt catccagaaa aatcagccaa tgttggcatg gtattactaa ataacttttt
     9961 atctttggag tctacatgtt agttattcca gctattgatt tgcaatctgg acgatgtgtg
    10021 cgcttaaaac aaggacggtt tgatcaagta acgcaattta gcgtttttcc catagaaagg
    10081 gctttgcatt ttgccaaact aggcgccaaa cgccttcacg tagtcgattt ggatggtgct
    10141 cgcagcggaa aaatgcaaca gttggagctc atttgttcca tgcaaaagac aggaatacca
    10201 attcaagccg gaggtggaat caggagtata gaacaagctt tggaatgcag caacgcagga
    10261 atttcacaat tggtcattgg cagcctggct attacaaatc ctgatttgac aatacaaatc
    10321 attgaaaaga ttaaacctga aaatattgtt cttgctctgg acgttcgtgt tgatacaaaa
    10381 gtcccccttc ttgcgattaa tggctggcaa aataatagta caagcagcct ttgggaagta
    10441 gtgtcctatt acgaaaacta tgggataaag aacatacttt gtactgacat cgcatgcgat
    10501 ggcatgatga atggtcctaa tttcgatttg tatcaacaag cagttgaata ttttcctcag
    10561 attgcctggc aagcctcagg gggagtacgc catatgcagg atattacaac gctgaattca
    10621 ttaggaatat ccgccgtaat ccttgggcta atgctttatc aagatcatat gaatttagag
    10681 gaattattat gttaacgaag cgaatcattc cctgtcttga cgttcgtgat aatcaggttg
    10741 tcaagggagt aaaatttcgc aaccatagaa taattggaga gatactccct ttggctgctc
    10801 actactcagc atcaggggct gatgaattag tattttatga tattactgca agtagcgatg
    10861 accgatctgt ttgtcctgat tgggtcaata aagtagcggc tactatcaat attccattta
    10921 cagtggctgg aggcatccga accttgcatc aagcaagatt aatattaaat gccggagcag
    10981 ataaaatctc aatcaacagc cctgcgttgg aaaacccttc attaattaat gaattgagca
    11041 aagagtttgg aaaacaatgt atggtaatag gagttgatag tcagtggata gttgatgatt
    11101 attatgtcta tcagtataca ggcaatgaaa ataaaagtat caattcaaaa cgcaaaactc
    11161 gagaatggat atatgaaatt caagaccgcg gtgctggtga gatagtcctt aattgcatgc
    11221 aatctgatgg cgttcgaatg ggatatgata ttgcacagct atcagaaatg attaacctct
    11281 gccacgttcc cctcatcgca tcgggcggtg ctggaaaaat tgatgatttt gttgaggtat
    11341 ttaaaaagtc tcatgtcagt ggggctttgg cagcaagcgt ttttcatgac aaaatactgg
    11401 caatcaatga cataaaacta gcattacaaa cagaaaatat tgaggtaaga ctatgagtga
    11461 cttggacatt aactctcttg attggcaaaa aatgaatgga ctattgccgg caataatcca
    11521 aaacgcagaa aatggtaaag tattgatgtt aggttatatg aatcaggaag cattaattgc
    11581 cacactaact acaggacaac tgaccttata cagcagaagt cggaaaagac tgtggcgtaa
    11641 gggagagtct tccggcaata gtatggctct acaacatatt agtgccgatt gcgacaatga
    11701 cagtcttttg atccaggtta ttcctaaagg gcccgcttgt catttaggtt attcaacctg
    11761 ttatcagcca cataataatt atactcttgg gtttcttgat ggtttgattg aattaattaa
    11821 tgaacgtgct gaggaaaaaa atccaaacag ttatactgct caactcttgg attctggtgt
    11881 gaaccgatgt gctcaaaaat taggagaaga gtcggtagaa acagtgatcg ctgctgtgag
    11941 taacaataaa gaagaactta tcaacgaagc gtctgattta atttatcatt tattagtgct
    12001 tctcaaagct tgtgagttaa gtttttatga tgttttattg tgtttacagg caagagacag
    12061 aagtgtacat acttaattgc ttattccata gaagatctct ataaccagaa tcctcagtaa
    12121 ttatcaatca agactagtta attttttaaa ctactattaa gaaattaact tttcttgaaa
    12181 tactctttaa tgtaatcagg caaattcatt tccaacactg cctcatcctt tttagttgca
    12241 tagtaagaag gcaactcact caccatagca ggctgggaat acagcttgca ctcagggaag
    12301 tattcaaaaa gcaactgtat ttttcccgca acatcattgc cagcaatggt tgaaataaat
    12361 tcaaatgcca gatcaatgcc actggaaatt ccaccagtag tccaaacttt acctgactta
    12421 acgatacgct tttcaaccaa ttggacatcc tcaaaagact ttaattcagg catagcgcgc
    12481 caataagttg ttgcttcatg atgagtcaat aggcctgccg catgcaataa aaatgctcca
    12541 gtacaaacag aaagcaaata gtcagtgttt tgagcctgct ttttcaaaaa agaaatcaaa
    12601 cgtggattat ttacttgctc tcttctacca gccccacctg gaaccagtaa ataatcaaat
    12661 tgtggagaat tgttaaattc gcaatgaggt ttcaggctaa tttgatttgc gcaacaaact
    12721 tcattgctgc tttctgccac cagaaacata tcaatagagg catcaagaat agttttccag
    12781 gttgcaaaca cttcccacgg cccaataaca tccataggct ggacgttttc ataaatcaaa
    12841 actcccaatt ttttattcgc cgcatcttcc cttttcagcg cgtttttcat gcaatgccac
    12901 cttaatctga aaaatcccat tttttatatt agtttttttg ataattgacc tgcatcgcat
    12961 atatacctca gcttatctat agctcgcaga ttatcaggta cttttatcag agtaaatcga
    13021 gaaaaatctc taataattaa aagacctctt catttttaca attcgttgat aagcttcatt
    13081 aatcctttgt tcagaaatct ctcccgatcg aactttttgc tcgatcatgt caatgatttc
    13141 tgtcgagtct tgaaattttt ctaccaattg attaccaaat attagcatat ctgctcctgc
    13201 attaattgaa agagtaacag cagtttctaa tccataataa ttcgttattg ctttcatttg
    13261 catatcatcg gtgataacaa ccccgtcaaa ttttaaatca cgacgcaata atccgttaat
    13321 gatctggtaa gaaaggctgg caggtagccc tgtcatatcc agttttctat tcacaatatg
    13381 agctatcatc accatatcgc aatgattggg ttgagataat aattgtaaaa aagggattaa
    13441 ttcttgctcg ctccaggtgt cacttatatc tacaaaaccc aaatgtgaat cagataatga
    13501 actgccatgt ccaggaaaat gtttatatga acaatgtatt tgatgtttta taaattgctc
    13561 tgtataaagt tgcgcgtatt gagtgacaat ttccggtatc gaagagaaac tcctgtcttt
    13621 tttgcctatg ataggattat ctggatttat attcacatct aattcaggga aaaaattcaa
    13681 attaaatcct gttgatttta aagtatttgc catcaattct gctgatgcat cagctctttc
    13741 cagagacatg gagccaatat cttttgctga aggcatttca gggaatccat aacggggatg
    13801 caatcgatta acgtttcccc cctcgtaatc aacagaaata agtaatggta aattatctct
    13861 atgatattta cgattggctt tttgcgtaag tgtttgtaac tgattattta accggttaac
    13921 ttgttccgga ctttctatat ttttatcaaa agtttgtgac tgctgattaa aatcaaaaag
    13981 aataacacca ccaatgttgt ttttctcaat tgcctgggca ataggtgatt tctcgtcaac
    14041 cactttgccc tggaatccta atattaacat ttgcccaatt ttatctctca aactcacttg
    14101 tgtggcacaa gctaccgtag tcaccaaaac aagaaaaaaa gataaaataa ttgacttgat
    14161 tttcaatgct aaactcatta gaaaatgctt aattttctct attgcgatat gcgccaatta
    14221 tacatattaa gaccaaacca atcaaatgtt atacaaaaaa attaacctaa taccatcctt
    14281 gatttaaaaa tcaaggttcc ctttatacca atgccaataa aatagctgtt aaataatttc
    14341 cctctggaaa agctgccaag gtaggatggc agcttgctgg tccgtatacg cctaaaatac
    14401 gcgcctgctt tcccatcgca acagcctgag cgcttaccag ggaacaaaaa tcctgggatg
    14461 acagcgctga agaacagttg caagtcatca ataaagatcc tggtttcata tatttaaatg
    14521 cttctctatg taaaaatcgg taataatttt tagcttgctg taaatgtttt tgtgaaggaa
    14581 ccagttttgg cgggtcaaga atgaccacat catattcgcc agccattttc agatattctc
    14641 tggcatctgc cttaataaat tcaatggtat ttaagtgatt taaaacagca ttatttttag
    14701 cctgctctat tgcctgcacc gagctatcta cagccgtaac atgaagagct cccgctttag
    14761 ctgcgtgcaa agcaaaccct cccgtaaaag tataaagatc caggactctt tttcccctgg
    14821 atagttttgc tatccttttg tgattttctc tttggtcaag aaacaatcca gttttttggg
    14881 tttgcgcaaa ttcaacatga tacagaacac cttcttccaa aacctgagtg ctaccctgac
    14941 ttttctctgt atgaatttct ttccagccat cttgagataa tggcttgttt tgaggaagcc
    15001 aaatgatatg attatgcggg agtaactctt gtaatacatg aacaataatc gatttattca
    15061 attctaccca ataggcagaa cttgctataa cacaatagtc attaaagcaa tcaatcgtta
    15121 aaccagagag tccatccgct tcactgttga acaatcgata agcattagtc tgttcatttg
    15181 gtaaatcaag acatcgtctc accagactgg cttgcttgat tctatgagta attaaagact
    15241 tgtaatcgaa actatttatc tgttcattgg agagagcaag aacccttact ctatataaag
    15301 agtgctcatt ataggctccg aatcctaaac tctcaccttc agagccaatt atctcaacca
    15361 attcacctgt aattagcttg ccagaatatt gagctatggc tttggggaaa atccagggat
    15421 gacctcttaa tacagtgttt tgctttccac taactaaaat aactttcgct ttcattctct
    15481 atttcccaaa acctaaaagt cagttaatct acactatcaa gaattatact tgcaatggaa
    15541 agaaggacaa atatgcggca atttacaaaa tacctaacca tttttctatt ttcatcttca
    15601 gtgagcgttg cttatgccgg tccctggttc actggacctt tattggcacc cgcaggccat
    15661 accgtcccca agggccatac caacctcgaa gtttatggca ttgatgtctt tactgatggg
    15721 caatacaatg catctggaca aagaatatcc acacccaagt ttaaaacctt tgccgccaac
    15781 ccaatactca ctcatggctt tactgactgg ctggatgtgc agttgaccgt gccttattta
    15841 ttcaactcga cacgcggagt ccatgagaac catttggctg atgtttcaac tgcattggga
    15901 atacaaatcc tagagcaaaa aggttcccct aaaagaatcg attttcgtgt ccttttacag
    15961 gaaacaatac ccactggacg ttatgaccaa ttgaatccgg ctttacttgg tacggatgcc
    16021 actggtcttg gaagctacca aacgttagtg ggcttagact ttcaatattt attacaagtt
    16081 tttaaaaccc attatctaag aacacgattt attgcatcac gccttttttc cagtaatgtt
    16141 catattgatg gactaagtag ttatggtggt tcaataaata ctcatgggac ggttaaaccc
    16201 ggcattgaaa ataacttaga cttggccttc gaatttactc ttactcaaca ctgggttgcc
    16261 gtaatggaag gttatattgc aactggtaaa gccactcgat ttaacggtat tttaaacttt
    16321 aacaacattg gcagcccgcc ggtcaatgtc agtgatttgg atgctgcccc cgtagttatt
    16381 ggcaacgcct catttagaga agaagcacta gctccggcaa tagaatacaa cttcaatgaa
    16441 aacattggag taattggtgg agtttggttt cccgtgagtg gaatcaatac ttctcattat
    16501 atgacctatg tactggcaat taatgccttt tggtgatagc acatgcgtta ttcctcctat
    16561 gaaatgaaaa aaaacaggtt cacttatggc cttgcccttg gagctcttgg ggttgtattt
    16621 ggtgatatag gtactagccc actgtatgct ttaaaagtta ccttatcagg cattcctatc
    16681 aatcaattca atatattagg cgtattatcg ctcatttttt ggtcattaat catcattgtt
    16741 tcttttaagt acttgatgat tatttttagg gctgacaatg atggggaagg aggaattttg
    16801 gcacttcttg ctttaatgaa gcataagagt accaaatatc aacctctatt ttacatagtc
    16861 gccatatttg gagccggttt gttattaggt gatggtatgc ttaccccggc catttccgtt
    16921 gtcagtgcgg tagaaggtct tggaactctt tcggataagc tctaccctta cgttctcccc
    16981 attgcttctg tgatcctcgt tttgcttttc tctttgcaag ccaaaggcac agcaaggata
    17041 ggctatcttt ttgggccact tatacttatt tggtttataa ccatagccat attaggaata
    17101 ttgcaaattg tagagcatcc agtagttttg caagcgatca acccctacca tgccattgca
    17161 tttttggttg acgaaggcct gagaggatat tttttactgg ggggtatttt ccttgtagta
    17221 acaggaggtg aagccttatt tgcagacata ggtcattttg gtaaaaatcc aatccgattc
    17281 agctggtttt ttatagcgct tccttgcctg ctattaaatt attttggcca aggcgctaac
    17341 ctgatagtac gccccgaaga aataagcaac ccatttttca tgattgcgcc accatggttt
    17401 tatctgcctt taattattat tgcaactgtt gctacagtga tcgcatctca agcagtaatt
    17461 tcagcaactt tttcactaac caaacaagcc gtgttgttag gtttatgccc caaaattcca
    17521 attgtccaga cctccatgct acattcagga caaatctatg ttccacaaat caattttatt
    17581 ctatttattg gtaccatggc attttgcctg gctttcaaaa cctcggataa cctggctcat
    17641 gcttatggaa ttgctgtaaa ccttgaaatg cttttagttg atgccatggt tgcttatgct
    17701 gctgtttcaa tatggagatg gtcaacattc aatgtgatat ttctctttgg tctattcctt
    17761 ttgattgatt tagccttttt aggagctaat actcataaat tcattacagg tggctgggtt
    17821 ccaattgttt tagctttctt tatagccttc attatgtaca gttggcgcta tgggttagag
    17881 tatt
//
LOCUS       DACVWI010000051        17876 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.051, whole genome shotgun sequence.
ACCESSION   DACVWI010000051 DACVWI010000000
VERSION     DACVWI010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 17876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17876
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.051"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            37..234
                     /locus_tag="JBH85_06390"
     CDS             37..234
                     /locus_tag="JBH85_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator"
                     /protein_id="HAU0945828.1"
                     /translation="MDIINLKFEEPLIIRISNTVVKILAFKTQENGNIKFGVEAPRSI
                     NIHREEVFHAIKQKETLSTAD"
     gene            245..1135
                     /locus_tag="JBH85_06395"
     CDS             245..1135
                     /locus_tag="JBH85_06395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HAU0945829.1"
                     /translation="MQVIPFRYFILLAGTIVFLSLVALVINHFIYQFPGNNYFPPNTP
                     VMACIILLNYTGLILFFGKKNRVTCSGLELINFFIVMSIIALATNAVQLTPYPPIDKQ
                     IIKLEAQLGINMISILEWTNKYQHFKYLLAIIYDTLPYQMSILPLYVIVSGRFYILKD
                     YYFLLLCTTLMGFSYYYFFPTTAPASELQSSLFAPEQIATGLKFHQIHNYIHPTTIEG
                     GLIALPSFHTIWAVLCVYLIKDWFIPCLLLSIINVLLILSCVLLGWHYPIDILAAIIL
                     VGLSYYLLTVIKVEARYLDL"
     gene            complement(1172..1906)
                     /locus_tag="JBH85_06400"
     CDS             complement(1172..1906)
                     /locus_tag="JBH85_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HAU0945830.1"
                     /translation="MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFS
                     EYGETIDEVGRRFNVGYYEMVRANPGVNARYPLAANTKLIIPSRFILPNVPRKGVVIN
                     LAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAES
                     IGAPIPSEFPPGPHNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEH
                     LYSLVSVGTPVRIINAPLQGQADFKQ"
     gene            complement(1966..3984)
                     /locus_tag="JBH85_06405"
     CDS             complement(1966..3984)
                     /locus_tag="JBH85_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase"
                     /protein_id="HAU0945831.1"
                     /translation="MNNYKHWDLQRDKDAILWLGLNRRDAAVNSINEEVLDELNSLLH
                     EISHDKKAMGLIIYSLKEKGFIAGADVNAFSQFESSSQAVDFLQKGQTVFARLQALSI
                     PSVAMIDGFCMGGGYELALACTYRIATDDKDTRIGLPEVMLGIHPGWGGTVRLPQLIG
                     GFKALSQVILTGSAIPAAKAKSLGMIDEVVPVRQLRRAAVYFIKNKPPRHRASFIESL
                     TNSSLLRKAIAYLLRYNVAKRVRKEHYPAPYAVIDLWEKEGGVGERAYLKEVDSIEKL
                     VSQNDTAKNLIRAFLLRERLKGFAKDSHFKATHVHVIGAGVMGGDIAAWCALRGLQVT
                     LQDKSYEQIAPAIGRAHKLYSKKLRKPRLIQAAMDRLIADPHGHGVKRADVIIEAVFE
                     NLVVKHEIMKTVEKNAKKDAIIATNTSSIPLDEISSVMSKPERLVGIHFFNPVAKMDL
                     VEIVSSSSTTKKVQQSACAFVNQIGKLPLPVKSSPGFLINRVLMPYLMECVQLLDEGY
                     SAETIDEAALQFGMFMGPVELADTVGMDVCLAVAENLTSHFGGTIPQRLRDLVKEGKL
                     GRKTGEGFYKYKNGKVIKKKAPSHVDKTIADRLILRMVNESAACIREKVVEDSDLLDA
                     GMIFATGFAPFRGGPMNYANDFGKDKLETLFKTFESKYGERFKVDTSL"
     gene            complement(3977..5296)
                     /locus_tag="JBH85_06410"
     CDS             complement(3977..5296)
                     /locus_tag="JBH85_06410"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HAU0945832.1"
                     /translation="MKHQSNLSGRNVYVVDGSRTPFLKAKGVGPFCGSDLAVAAGTTL
                     LNRQPFSPDELDEVIIGSAMPGPDEANIARVVALRLGCGDKVPAFTVMRNCASGMQAL
                     DNAAIQIATGRSNLVLAGGTDAMSHAPLLFNEKMASWLANWFAAKSMGQKLALITKFK
                     PSYLAPVIALLRGLTDPIVGLNMGQTAEKVAYRFNITREQMDEFAAQSHLRIAQAYAE
                     NRMSEVAPIIDYKGCIYPQDDGIRADSTVEKLSKLKPFFDKKYGMVTPGNSSQITDGA
                     CMLLLASAEAVKKYALPVLGRIVDSQWAALDPSQMGLGPVHAATPILERHNLKPQDLD
                     CWEINEAFAAQVLGCLAAWNDEEYCKTQLGLKEAIGAPSLERLNRDGGAIALGHPIGA
                     SGARIVLHVLKSLEQRNESRGMAAICIGGGQGGAMYLERVTEVKGHE"
     gene            complement(5459..6520)
                     /gene="lem11"
                     /locus_tag="JBH85_06415"
     CDS             complement(5459..6520)
                     /gene="lem11"
                     /locus_tag="JBH85_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem11"
                     /protein_id="HAU0945833.1"
                     /translation="MWYDTLLEYLSETICPSNKEKARLFISHLFKLLKENSDFGENFE
                     PEFIFGVMVALYNYSISHENQNVTLDEFGKYCMGLIMVFSKISDDLSIYCSDFTYILS
                     DKTILQELKIEGELAAIRKDYLKKKRTNPEVTPFVDQKDVANPFEIYKKIGELAKIDL
                     LKDLENHTLAYLNFSVKIQTEKIADMLNDLLNRVQNQQVIVSGLYQYLLPYKGKDDLF
                     DALIFSLKRELKKLSHNFSPKTQPSSISKINLVLVPSLKLDHQPRHNPEIVNICEKLE
                     NYVFRGSNKKSSFFSAKNHCGYTKEVNEIVQRILRGDLLTAEAIFHELAKINIESRKD
                     ELILLRNDLQSEKVCVRKL"
     gene            6703..6792
                     /locus_tag="JBH85_06420"
     tRNA            6703..6792
                     /locus_tag="JBH85_06420"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6737..6739,aa:Ser,seq:gct)
     gene            6799..6875
                     /locus_tag="JBH85_06425"
     tRNA            6799..6875
                     /locus_tag="JBH85_06425"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6833..6835,aa:Arg,seq:acg)
     gene            complement(6928..8214)
                     /gene="legL2"
                     /locus_tag="JBH85_06430"
     CDS             complement(6928..8214)
                     /gene="legL2"
                     /locus_tag="JBH85_06430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegL2"
                     /protein_id="HAU0945834.1"
                     /translation="MRVELFNPSIKKIIVKLSQLKGLWIVQLNLSKNRLSEKKFTDLA
                     VLLSMLKAFGVTYLNLHFNNLGQKTGTELVALFKILKDSGISRLSLSANELYQKTGTE
                     LATLLTALSDSDIIQLDLSCNWLGQRQDAELIELFKAWSSTPIIDLDLTNNDLGKKSG
                     IVLSEMFRALKVSSISHLGLRNNDLYQRTGAEFSSLLSAIKDSPVTHLDLSDNGLHLM
                     VAAAFETLFDALKDSSVTHLNLCRNGIGHLDMFQMTAMFCSLQCTGVTHLDLGENSLE
                     LMTAEELAAIFQVFKDSRLIHLGLNDSYLNNRTTEDLHLIFNALPANIATIKLSLEEL
                     TEMSSEQRQTIQRRFPRAEQVILVNNMEGRELNPSLSLGDANVYRRLGFVGVSPLSLA
                     GLASFFVASNNLRFAREVQKLLPDEVTERIVKNILG"
     gene            8678..10102
                     /locus_tag="JBH85_06435"
     CDS             8678..10102
                     /locus_tag="JBH85_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HAU0945835.1"
                     /translation="MIVIFVHGWSVTHTNTYGELPQWLENQSKQGKLDIQVGNIYLGR
                     YISFDDTVTVDDIARAFDQAVRDEIAAKVKDGQRFACITHSTGGPIVRKWMDLYFKNN
                     LAKCPLSHLIMLAPANHGSALAQLGKSRLGRIKSFFEGIEPGKCVLDWLELGSDMSWQ
                     LNESWLDYDCTANGVYSFVLTGQKIDRQLYDAVNSYTGESGSDGVVRVAATNMNYSLL
                     KLHQEGDNGESLVVAKMTRTQPMAFGVLPGLSHSGKNIGIIRSITMANAATHPTAIWV
                     LRCLQVKSRDSYNKLVKELDNITKETQKNEHKEFVKTLVFTREYITNRYSMIIFRLID
                     DRGNHLIDYDLYLTAGPQYSEQALPAGFFVDRQRNLNNRGKLTYFLDYDIMEGGINTP
                     KMQGNLGFRVKAYPESSEQALAYYRLLDFHSSLADIHKILHPNETVMVEIMLQRRVDK
                     TVFRINNNLTPAKISGKPTGKKID"
     gene            complement(10173..10850)
                     /locus_tag="JBH85_06440"
     CDS             complement(10173..10850)
                     /locus_tag="JBH85_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES family NAD+ phosphorylase"
                     /protein_id="HAU0945836.1"
                     /translation="MYSYIDFNDKVHRLIPSKFPPVTLFDWADSAEELEQIALLEGLT
                     NERILAELGKINLIDQEDWIGGPGSTPIMAAFTHTGFESRFSDGSFGIYYAASSLETA
                     IKETCFHRERFYSASNEKPCSISMREYVANIKKPLIDITDKSYKDLFNPDPACYSKSQ
                     EFGKKICEKKEWGLLYPSVRDLNGLCVAVLRPPALTIPIQGCHLRYIWDGEKISDIYK
                     ESKITNI"
     gene            complement(10852..11331)
                     /locus_tag="JBH85_06445"
     CDS             complement(10852..11331)
                     /locus_tag="JBH85_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2384 domain-containing protein"
                     /protein_id="HAU0945837.1"
                     /translation="MYFSLNEHLIHLICLFVDSCLFGDYTIVESSQEFSMQTNTRSLQ
                     SIPDEVVWKSLTNLVERFDLKESEARILMGDMPRSTYTSHKAKLNRDQKERVSYLLGI
                     YKSLRILFEDGEQARTWINRKNDLPPFKGLTPKEYMLEGGMVRLADVRKFLDFWRGY"
     gene            11439..12098
                     /locus_tag="JBH85_06450"
     CDS             11439..12098
                     /locus_tag="JBH85_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HAU0945838.1"
                     /translation="MIDTIQSEPKINFTYNYKQPDDYHFSLDSIHLAKFVAKQLESYP
                     DLGSLRVLDLCAGCGVIGIELSWYLQAIRQIDFIEIQDIYTECFYQNIANVNRPELQF
                     RWHLLNYDELHKKKWEDKFDLIISNPPYFQPGHGMLSPSKFKNRCRFYLDSSFQSYIQ
                     ALGNSLANRGKAYFLLRPLKHHGLDLFSDIQKILQETSVTATKISHIRGTDIILLEKL
                     K"
     gene            12324..14651
                     /locus_tag="JBH85_06455"
     CDS             12324..14651
                     /locus_tag="JBH85_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HAU0945839.1"
                     /translation="MEFSMKENVSHLPRELSRMVFWSLTCLKKAIAEVYGKETYERIE
                     QIRLSMQDTIGSESFSLGKALHSLQIELSKLEKKQLYQIAHGFSLMMELINTCENAYR
                     IFRINQRKEQVYSDMPQGIHYVLTAHPTEARTNEFLKLFKEIRDYLIEVLKSPYLMNE
                     SHLDQMLKISLQINISYHEKPSVEDEAQYIYQYALHPLNIKLYHSFLAKGVPIQLRTW
                     VGGDKDGHSGVNEKIMLKSLELSRSFFIAYIQECLEEVLEIIKLSTALGKNKSLADQI
                     NQLVKKAYGLKKIQSKDHEKISAFKNELTATQINALKFLNFEPEQFSIISSIFHLYPA
                     LVMPIELREDSAVVKESLTSIKKTTITKMLEQVHSITHGTDPKNYIRGFILSMVESAE
                     DIKNGINLVKKVFKSYALPVVPLFENQLALTNADTILNNSITEDIRQKHLKQWEGNYE
                     VMLGYSDSSKENGVLPSRLMIAKSLKNIQSTLENKNLRPIFFHGSGGSIERGGGDIKE
                     QTASWSKEMMSNYKVTVQGEMVARLFGSSSILKSQIDKFLDIYSQKGKSNNNDYPEEL
                     SLFSTRVSQKYKTLIQSDWFWQIVEQASPYHFLKELKIGSRPTKRKSGPDQRKLRAIP
                     WILCWTQTRLLFPTWWGIGSTWSELNGIEKNRLKALYKENALFAAFVKQLGVTLSKVY
                     LPVWEQYLLQLTGSIEYLRPFQSELESTIQFFYQITDEKDFCFHQPWLGESIQLRSTL
                     IHPLNLIQIEAMKRKDLPLLRKTVTGISCGMLTTG"
     gene            14805..15287
                     /locus_tag="JBH85_06460"
     CDS             14805..15287
                     /locus_tag="JBH85_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HAU0945840.1"
                     /translation="MSFSMKIKNIPYYVATRVVKRIQSWLGLNTLGARAIVTNAEGHV
                     LLVKHTYQPHWYLPGGGVKKGESTKAAVIRELHEEVGLVVAEQDVILFGIYHHKYLGV
                     NDYPVIYIVKNFTSHVTHSGEIEQIGWFSLDALPEMVSPGTKRRLGEYFDNNPISEKW
                     "
     gene            complement(15338..16591)
                     /locus_tag="JBH85_06465"
     CDS             complement(15338..16591)
                     /locus_tag="JBH85_06465"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HAU0945841.1"
                     /translation="MNTNIANQLRAAKKATTDLNLIQSDTRTIILKTLAANLEKHIEN
                     IIQENQKDLSLMLEQDPRYDRLLLNKERILSLVNDVRKVANLPNPLGVNLFEKSMPNG
                     LSIKKITVPLGVIAVIYESRPNVTIDIFSLCFKSGNVCILKGGKEAHFTNSYLLLLIK
                     NTLKNFNINTDIVCLLPPERALMTQLLNATGLVDLCIPRGSQNLINFVRDNAKIPVIE
                     TGAGIVHTYFDKSGDLGKGKKIINNAKTRRVSVCNALDTLIIHADRLKDLPELVETLS
                     QKNVIIYADQDAYHVLDKNYPEQLLIKAKPQDFGHEFLDYKLAIKTVPNIKAAIDHIQ
                     QFSSHHSEAVIAEDESAIDKFLTEVDAAAVYANASTAFTDGGEFGLGAEIGISTQKVH
                     ARGPMGLEALTSYKWVIRGTGQIRD"
     gene            complement(16600..17670)
                     /gene="proB"
                     /locus_tag="JBH85_06470"
     CDS             complement(16600..17670)
                     /gene="proB"
                     /locus_tag="JBH85_06470"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HAU0945842.1"
                     /translation="MKIIIKVGTQSILSVDGSPIYSVLNNLVNQIIYLKNLGHQVILV
                     SSGAVGSGRKIAKNSLGKTYGDTVGEKQLLASIGQPELMNLYSSLFKNENILVSQLLL
                     TKQDFHTRQHYLNIARLLTELLKHQNIIPIVNENDSVAIEELMFTDNDELAGLIAAQI
                     NADYLILLTNVDGVFTSHPNDPESKLINTIDPNSGWPNVSAVKSKLGRGGMVSKLDTA
                     RKMAGLGINTVIANVNVESIVPKILNREAVGTIILASKRKSSIKRWIAFSHRTSLPSI
                     VINDNLITLLRNGNRVMSILPIGIEDFRGECKKGDLIDILNSNNEKIGVGIARYDFLR
                     LKDYLRLQNKPAFIHYDQLHIL"
BASE COUNT         5534 a         3575 c         3098 g         5669 t
ORIGIN      
        1 ttaggaataa tttatgaaaa aagaggtttt ttttaaatgg atataataaa tcttaaattt
       61 gaagaaccac ttatcattcg tatctcgaat actgttgtta aaattttggc ttttaaaaca
      121 caggaaaatg gaaatataaa atttggagtt gaggcaccca ggtcaatcaa tattcacaga
      181 gaagaggttt tccatgcaat taaacaaaaa gaaactctta gcacagctga ctaataacaa
      241 ataaatgcaa gttatacctt tcagatactt tattttattg gctggaacta tagtatttct
      301 atcgctagtt gctttagtta tcaatcattt tatctatcaa ttccccggga ataattattt
      361 tccacctaac accccagtta tggcatgcat tatcttgtta aattataccg ggttgatttt
      421 attttttggc aaaaagaata gagtgacttg ctctggatta gagttgatca atttttttat
      481 tgtgatgtca atcattgctt tagcgacaaa cgctgttcaa ttaactccct atcctcctat
      541 agacaagcaa attattaaac tggaggcgca actgggtatt aatatgatat ctattctgga
      601 gtggacgaat aaatatcaac attttaaata cttattggcg attatctacg ataccctacc
      661 atatcaaatg agtatcttac ccctttacgt aattgtatca gggcgatttt atatccttaa
      721 agattattat ttcctattac tctgtacaac attaatgggg ttttcttatt actacttttt
      781 cccaactaca gcacctgcaa gtgaactaca aagcagttta ttcgcccctg aacaaatagc
      841 tacaggactt aaatttcatc aaattcataa ttatatacac cccacaacta ttgagggtgg
      901 tttaatagct cttccctcat ttcatacaat ctgggcagtt ttgtgcgtct acttaatcaa
      961 agactggttt ataccctgcc tattgctgtc aatcattaat gttctattaa tcctttcatg
     1021 tgtactgctg ggatggcatt acccgattga cattttggcg gccataatac ttgttggatt
     1081 atcttattat ctgttaactg taattaaagt tgaggcccgt tatttggatt tataggcatt
     1141 aatctgactg aaaacccata cctgaaaata gttattgctt aaaatcagct tgcccttgta
     1201 gaggagcatt tataattctt actggcgtcc ctacagacac taaactatat agatgctcaa
     1261 tatcctcagg aagcatacga atacaccccg cactgacttt ggccccaatc ccatcaactc
     1321 gattagaacc atgtattaag atagctggcc accctaaacg caatacatgt tgacctaaag
     1381 gattgtgagg accagggggg aactcactgg gaataggagc accaatgctt tcagctgcct
     1441 tttgtaattt tactgtaggt cgccaggtag gattaatttc cttggagatg attctgctta
     1501 atcccaaagg agtctcccat ccttttttac caatcccaac aggataagtc atgacaacat
     1561 tgtcatctgg aggaaaataa tataatcgat attctgctaa attaatcact acaccttttc
     1621 tgggaacgtt ggggaggata aaacgagatg gaataattaa ttttgtgtta gcagctagcg
     1681 gatatctggc attcactccc gggttagcac gtaccatttc ataataaccg acattaaaac
     1741 gccggccaac ctcatctata gtttctccat actctgaaaa tgcgacctga atttcaccga
     1801 cggtatttcc ggcttcaggc aatacataaa cattcgcaaa agaatattga ctgagtaaaa
     1861 gtattaaata ccaaactctt attatagatt ttgatttttg ctccatatga tgcttttctc
     1921 tctaaaaagc aaggtaaaac cataacgtct taccttgcag agaaattata agctggtatc
     1981 taccttaaaa cgttcgccgt atttagattc aaatgtttta aataaagttt ccagtttatc
     2041 tttaccaaaa tcatttgcgt aattcatagg ccctccacgg aatggagcaa aacctgtggc
     2101 aaagatcatt ccagcatcca acaagtcaga atcttcaacc actttctcac gtatacaagc
     2161 tgcagattca ttcaccatgc gcaaaattaa tctgtctgca atggttttat cgacatgtga
     2221 tggagccttt ttcttaatta cttttccatt tttatattta taaaaacctt ctccagtttt
     2281 tctgcctagc ttaccttctt ttactaaatc acgtaatctt tgtggaatag taccaccaaa
     2341 gtgactggtc agattttcag ccacagcaag acaaacatcc attcctactg tatcagccag
     2401 ttcaacaggg cccataaaca taccaaactg taatgcggcc tcatctattg tctccgcact
     2461 atatccttca tccaataact gtacgcactc catcaggtaa ggcatgagca ctctatttat
     2521 taaaaatcca gggcttgatt tgacaggcaa aggcaatttg ccaatttgat tgacgaacgc
     2581 gcaagcgctc tgctgaactt tttttgtagt agatgagctg ctgactattt ctaccaaatc
     2641 cattttagct acaggattaa agaaatgaat gcctaccaag cgttctggtt tactcattac
     2701 actgctgatt tcatcaagtg ggatactaga ggtgtttgtc gctatgatcg catctttttt
     2761 ggcatttttt tccacagttt tcattatttc atgcttaaca accaaattct cgaaaacagc
     2821 ctcaataatg acatctgctc gttttacccc atgcccatgg ggatctgcaa ttaatctatc
     2881 cattgcggcc tggatcaatc gaggcttacg cagttttttg ctataaagtt tatgtgccct
     2941 ccctattgca ggggcaattt gttcataaga cttatcctgt aatgtgacct gaagacctcg
     3001 caaagcacac caggcagcga tatcccctcc cataacccct gctccaatca catgaacatg
     3061 ggtcgctttg aaatggctgt ctttggcgaa cccttttaat cgctcacgca ataaaaatgc
     3121 tctgataaga ttcttggcgg tatcattttg ggatacaagt ttttctatag agtccacttc
     3181 tttaagataa gccctctctc ccactcctcc ttctttttcc cacaggtcaa tcacggcata
     3241 tggtgcagga taatgttctt ttcgaactcg cttggctacg ttataacgca gtaaataagc
     3301 gatagctttt ctgagcagag agctattcgt taaactttca ataaatgatg ccctgtgtcg
     3361 tggtggttta ttctttatga aataaacagc agcccttctt agctgacgaa caggtactac
     3421 ctcatcaatc ataccgaggc ttttagcttt tgcagcaggt attgcactac cggttaatat
     3481 gacttgtgat aaagctttaa aaccacctat taactgaggc aaacgcacag taccgcccca
     3541 ccctggatga atacccagca ttacttcagg caaaccaata cgtgtgtctt tgtcatccgt
     3601 tgcgattcgg taggtgcagg ctaaagctaa ctcataacca ccgcccatgc aaaaaccatc
     3661 gatcattgcg acacttggaa ttgataaagc ttgcaaccga gcaaatacag tttgtccttt
     3721 ctgcaaaaaa tcaaccgctt gtgaagagct ctcaaattgt gaaaaagcgt taacatcagc
     3781 acccgcaata aacccttttt ccttgagcga ataaataatt aatcccattg cttttttatc
     3841 atgcgatatt tcatgcagca agctgtttaa ctcatccagg acttcttcat taatgctatt
     3901 aacagcagca tcccttctat ttaatccaag ccacagaatg gcgtctttat ctcgttgtaa
     3961 atcccaatgt ttataattat tcatgtcctt tcacctcagt aactcgttca agatacatag
     4021 ctcctccctg accacctccg atacaaattg ctgccatacc tcgcgactca tttctttgct
     4081 ctaaagattt aagaacgtgc aatacaatac gagccccact ggcaccaata ggatgaccta
     4141 acgcaattgc tcctccatcc cgattgagtc gctccagcga tggcgctcca attgcctcct
     4201 taaggccaag ctgtgttttg cagtattctt catcgttcca tgcagccaaa caccctaaga
     4261 cttgagcggc aaaggcctca ttgatttccc aacaatccaa atcttgtggc tttaaattat
     4321 gtctttctaa tataggggtt gccgcgtgaa caggacccaa acccatttga gagggatcta
     4381 gagcagccca ttgtgaatca actattcgac ctaataccgg taaagcatat ttttttacag
     4441 cctcagcgct ggccaatagc aacatacagg caccatcagt tatctgtgaa ctgttgcctg
     4501 gggtgaccat gccatatttt ttgtcaaaaa aaggttttag ttttgacaat ttttccactg
     4561 tggaatctgc cctaatccca tcatcttgag gatatataca acctttataa tctataattg
     4621 gggcaacttc agacattcta ttttcagcat aagcttgagc tattcttaaa tggctttgag
     4681 ctgcgaattc atccatttgc tctcttgtga tgttaaatcg ataagctact ttttcagctg
     4741 tttgtcccat attcaatcct actataggat cagtcaggcc tctgagcaaa gcgattaccg
     4801 gtgccagata agaaggttta aactttgtaa ttaaagccag cttttgcccc atacttttag
     4861 ctgcaaacca gtttgcaagc caggaagcca ttttttcatt aaataacaac ggtgcatgac
     4921 tcatggcatc tgttccacca gcaaggacca aattactgcg ccctgtagca atttggattg
     4981 cggcattatc caatgcctgc atgcctgacg cacaatttct cattacagta aatgcaggca
     5041 ccttatcacc acatcccaaa cgcagagcaa ccacgcgagc gatattggcc tcgtctggtc
     5101 caggcatagc gctaccaata atgacctcat caagctcgtc cggagaaaat ggttgacgat
     5161 ttagcaaagt tgttcctgca gcaactgcca aatctgaacc acagaatgga cctactcctt
     5221 ttgctttaag aaaaggcgtt cgacttccat cgacaacata aacgttacga ccacttaaat
     5281 tcgactggtg tttcattagt cctccttgtt agggcctctg cataagaatc tatattaaaa
     5341 tcaacagatt caaagattag cagtattctt gatattttgg aaatcttaag atgatttttt
     5401 gatgacatta aattacgtaa atcattctgg aggtgtttat tctttaagcc ttactctgtt
     5461 aaagctttct tacgcatacc ttttcacttt gcaaatcatt tctaagcaaa atcaattcat
     5521 ctttacgact ctctatatta attttagcta attcatgaaa aattgcttct gctgttaaaa
     5581 gatctcccct caatattctt tgcactattt catttacctc tttggtgtag ccacaatgat
     5641 tttttgctga aaaaaatgaa cttttcttat tggatcctct aaagacatag ttttccaatt
     5701 tttcacaaat attcactatt tctggattgt gcctgggctg gtggtcaagt tttaaacttg
     5761 gaacaagcac gagatttatc tttgatatac tggaaggttg tgttttagga gagaaattat
     5821 gacttaattt ttttaattct cttttgagtg aaaatatcaa ggcatcgaac aaatcatcct
     5881 tgcctttata aggtagaaga tattggtaca gtccagagac tataacttgc tgattttgta
     5941 cacgatttaa taaatcattt agcatgtcgg ctattttttc tgtctggatt tttactgaga
     6001 aattcagata ggcaagtgta tggttttcca aatccttcag tagatctatc ttggctaatt
     6061 cacctatctt tttgtatatt tcgaaaggat ttgctacatc tttttgatca acaaatggag
     6121 tgacctccgg gtttgttctt tttttcttta aataatcttt tctaatcgca gctaattccc
     6181 cttcaatttt taattcttgt aaaatggtct tatctgataa gatatatgta aaatcagaac
     6241 aataaatgga tagatcgtct gatattttgg aaaataccat aattaatccc atacaatatt
     6301 tcccaaattc atctaaggtg acgttttgat tctcatgact tattgaatag ttataaagag
     6361 cgaccatcac accaaaaata aactccggtt caaaattttc tccaaaatca gagttttctt
     6421 ttaataattt gaataaatgg cttataaata gcctggcttt ttctttgttt gatggacaaa
     6481 ttgtttcact taaatattcc aatagagtgt cataccacat aataatcctt taaatccctt
     6541 taataggtag tgtcataaca taaatacatt taaaaaaaaa tctgctgata tttttatatg
     6601 cattaatgat atttattatg ctcaattttg aatttcatca ctttatgcaa taagaattat
     6661 tgacgcatgt taaatacctg atatactccg caaccattga ttggagagat ggccgagtgg
     6721 tcgaaggcgc tcccctgcta agggagtatg ggagaaatcc catcgagggt tcgaatccct
     6781 ctctctccgc caatcaacgc gcccgtagct cagttggata gagtatctgg ctacgaacca
     6841 gggggtcgga ggttcgaatc cttccgggcg cgccattttt aatcggtcta ttccgaaggc
     6901 atcgcttata aattcatata aacctattca gccgagaata ttcttgacaa tacgttctgt
     6961 tacttcatcc gggagtaact tttgcacttc acgcgcgaac ctgaggttgt tgctggccac
     7021 aaaaaaggaa gctaaaccag ctaaagacag gggagacacc ccaacaaagc ccaaccgccg
     7081 atatacattg gcatcgccca agcttaatga agggtttaac tccctaccct ccatgttatt
     7141 aactagaata acttgctccg ccctgggaaa acgcctttga atcgtctgac gttgctcgct
     7201 gctcatctca gttaactcct caagcgataa tttaatcgtc gctatattgg ctggcaatgc
     7261 attaaaaata agatgcaaat cttctgttgt tctgttattt aaatagctat catttaaacc
     7321 aagatgaatt aatctggagt ctttaaagac ttggaatata gctgctaact cctcagcggt
     7381 catcaactcc agactattct cgcctaaatc aagatgagtc acccctgtac actggagtga
     7441 acaaaacatc gctgtcattt gaaacatgtc cagatgccca atgccattac ggcataaatt
     7501 gagatgggtg acggaggagt cttttagagc atcaaataga gtctcaaaag cagcagcaac
     7561 cattagatgc aatccattat cacttaaatc gaggtgagtg actggagaat cttttatggc
     7621 actcaacagg gatgaaaatt cggcacctgt cctttgataa agatcattat tacgtaaacc
     7681 aagatggcta attgaagata ctttcaatgc acggaacatt tccgacaaca cgatccccga
     7741 ttttttacca agatcattat tggtcaagtc aagatcaatg attggagtac tactccatgc
     7801 cttaaatagt tcgattagtt cagcgtcttg tctttgtccc agccaattgc agcttaaatc
     7861 aagctgaatg atatctgaat cgcttaaagc ggttaacaag gtggctaatt ccgtcccggt
     7921 cttttggtaa agctcattag cacttaaact aagacggctg attccagagt ccttaagaat
     7981 cttaaacagg gctaccaatt cagttccagt cttttgccca aggttattga aatgcaaatt
     8041 aagataagtg actccaaaag ccttgagcat actgagcaga actgccaagt cagtgaattt
     8101 tttctcactc agtcggtttt ttgacaaatt gagttggaca atccacaagc cttttagttg
     8161 actcaatttg acaatgattt ttttaatgga tggattaaat agttcaacgc gcatggatgc
     8221 ttcttatatt actttgcaag gctaaaaaaa gcgaatacga gctgatttac aaaagctatg
     8281 tcttttcacc ttaatctgtc ctaatctttc tcgccgtgca atattgtact atatcaccca
     8341 tccatatcca taatatctta tggactataa ttttcaaaac ttcaaagccg cataagcagt
     8401 cgttgaatca actagaaatt ttgtataatt catatataaa taatcgattt cctttcagtt
     8461 aattaattag atgaaaaata tttcaaaaga tatcattcaa gcttatattg ctcttgtctt
     8521 ttaacagtag gcaaaatatt cattaaaagg ctgcttattt tttaacactg aaaattctgg
     8581 gtcataatta aaaacttgag ggttgagtat aaaataatct aatatcatca agttactcaa
     8641 caatgtcttg ttgtgagcca acaattcaag gagcgttatg attgttatct tcgtccatgg
     8701 ctggagtgtc acgcatacca atacttatgg ggaacttcct caatggcttg aaaatcagag
     8761 taaacaggga aagctggata ttcaagtcgg caatatttat cttgggcgct atattagttt
     8821 tgatgatacg gtgacggttg acgatatagc acgcgcattt gatcaagcgg tacgtgatga
     8881 aattgctgct aaagtaaaag atgggcagcg ttttgcttgt atcactcact ctactggtgg
     8941 acctattgtc cgcaaatgga tggatttata ctttaaaaat aatcttgcaa aatgtccgtt
     9001 gagtcacctt atcatgctgg ctcctgccaa ccacggttct gctcttgctc aacttggtaa
     9061 atcccggcta ggccgcataa agagtttttt tgaaggcatt gaaccgggaa agtgtgtact
     9121 tgattggctt gaactcggaa gcgatatgag ctggcaactt aatgaaagct ggcttgatta
     9181 tgattgtact gccaatggtg tctattcctt tgtacttact ggccagaaaa ttgatcgcca
     9241 actttatgat gcagtgaact cctacacagg agaatccgga tccgatgggg tggtacgcgt
     9301 tgctgcaaca aatatgaatt atagcttatt gaaattacat caggaggggg ataacggtga
     9361 aagccttgtt gtcgccaaaa tgacacgaac acagccaatg gcatttggag ttctacctgg
     9421 actttcacat tccggtaaaa atatcggtat catccgtagt attactatgg ccaatgcagc
     9481 cactcacccc acggcgatat gggtcttgcg atgtctgcaa gtaaaaagtc gtgactccta
     9541 taataaatta gtaaaagagt tggacaatat tactaaagag actcagaaaa atgagcataa
     9601 ggagtttgtg aaaacacttg tctttacgcg tgagtatata accaatcgtt actctatgat
     9661 tattttccgg cttattgatg accgcggcaa tcaccttatc gattatgatc tttacctaac
     9721 tgccggacct caatatagcg agcaggcgct tcctgcaggt ttttttgtag atcgtcagcg
     9781 aaatctcaat aatcgaggta aactgactta ttttcttgac tacgatatca tggaaggtgg
     9841 aattaatacc ccaaaaatgc agggtaatct tgggttccgt gttaaagcat atcctgaatc
     9901 aagtgagcaa gcccttgcct attacaggtt acttgatttt cattcatcgc ttgctgacat
     9961 tcacaaaata cttcatccga atgaaaccgt aatggttgaa atcatgctgc aaagacgagt
    10021 agataagaca gttttccgta tcaacaacaa ccttactccg gcaaaaatca gtggaaagcc
    10081 aactgggaaa aagatagatt gatacctctt tcgtttaatg catttgcatc attaatgaga
    10141 aagtcatcta gccacaattt gggaaaaata tcttaaatat tggtaatttt actttcttta
    10201 taaatatctg aaattttttc accatcccaa atatatctta aatggcatcc ttgtatcggt
    10261 atagtgagcg cgggaggtct taatacagcc acacataagc catttaaatc tcttacactt
    10321 ggatatagca agccccattc cttcttttca caaattttct tgccaaattc ctgactttta
    10381 ctataacaag caggatcagg attaaacaag tctttataac ttttatctgt aatatctatt
    10441 aatggttttt ttatattagc tacatactct ctcattgaga tggagcaagg tttttcattt
    10501 gatgcgctat aaaaccgttc tcgatgaaag caagtttcct ttattgctgt ctcaagagat
    10561 gaagcggcat aataaatacc aaaactgcca tcactaaatc ttgattcaaa tccagtatgt
    10621 gtaaaagcag ccataattgg agtagatcca ggaccaccaa tccaatcctc ttgatctatc
    10681 aaatttattt tacctaactc tgcaagtatc ctttcattgg ttaagccttc aagtagcgct
    10741 atttgttcga gctcttctgc agaatctgcc caatcgaata aagtcacggg agggaattta
    10801 gaaggtatta gtctatgcac tttatcatta aaatctatat aggaatacat cctaataacc
    10861 tcgccaaaag tccagaaact tccttacatc tgcaagacga accatccccc cttccagcat
    10921 atattctttg ggtgttaaac ctttaaacgg aggtaaatcg tttttacgat taatccaagt
    10981 tctggcttgt tccccatctt caaacaatat acgtaaagac ttataaattc ctaaaagata
    11041 ggagactcgt tctttttgat ccctgtttag tttcgcttta tgggaagtgt acgtagagcg
    11101 tggcatatcc cccatcaaaa tacgggcttc actttctttt aaatcaaaac gttctacaag
    11161 attggttaaa gacttccata ccacctcatc tggtatgctt tgtaaagacc ttgtattagt
    11221 ttgcatacta aactcctgac tgctttctac tatagtatag tctccaaaga gacaactgtc
    11281 tacaaaaaga catattaagt gaattaaatg ctcatttaat gaaaaataca ttgatctgac
    11341 atgcagaata tgaaataaat ttcaaaaatc aattaacagt gcaacaagca agggaataag
    11401 gtgctttaaa accatagtta agagaaaata atttcaatat gattgataca atacagagcg
    11461 aaccaaaaat aaattttact tataattaca aacaacctga cgactaccat ttcagtcttg
    11521 attcaattca tctggctaaa tttgttgcaa aacaattgga atcctatcca gatcttggtt
    11581 cattaagagt attagatctc tgtgcaggct gtggagtaat tggaattgaa ctgtcatggt
    11641 atcttcaagc aatccggcag attgatttta ttgagatcca ggatatttat actgaatgtt
    11701 tttatcaaaa catagctaac gttaatcgac ctgagctgca atttcgctgg catctcttaa
    11761 attatgatga actacataaa aaaaaatggg aagacaaatt cgatttgatt atcagtaatc
    11821 caccctattt ccaaccaggt cacggaatgc tttccccttc aaaatttaaa aatcggtgca
    11881 gattttattt agatagctct tttcagagtt atattcaagc gctgggaaat tcacttgcaa
    11941 acagaggtaa agcttatttt ttattacgtc cattaaaaca ccatggtctt gatttatttt
    12001 ctgacataca aaaaatcctg caggaaacat cagtaacagc aacaaaaata tcgcatatcc
    12061 gtggtacaga tattatttta ttggaaaagc tgaaatgaat agtagtattc tttataggac
    12121 attgattttg gtctgcctta aaaaataaaa atatttttca acacaaatta agtatattaa
    12181 aattgcatac caaagtattc ttgaatggtt gtgccaaaat cctttgagaa tcaactagag
    12241 aagtagacaa tgaagtattt actgcatcag agttagataa ccaacagacg gcattcccct
    12301 acagaataaa ccattcggat aaaatggagt tttcgatgaa agaaaatgtg tcccacctgc
    12361 caagagagct cagccgtatg gttttctggt cacttacctg tttaaagaaa gccattgcag
    12421 aagtctatgg aaaagaaaca tatgaaagaa tcgagcaaat tcgactatcc atgcaagaca
    12481 cgatcggaag tgagtcgttt tcacttggga aagctcttca tagtcttcaa atcgagcttt
    12541 ccaaacttga gaaaaaacag ttatatcaaa tagctcatgg tttttccctt atgatggagc
    12601 tgattaatac ctgtgaaaat gcctaccgca tttttcgtat caaccaaaga aaagaacaag
    12661 tttattctga tatgcctcaa ggtattcatt atgtattgac agcacaccca acagaggctc
    12721 gtaccaatga atttttaaag cttttcaaag aaattcgtga ctatcttata gaagttctta
    12781 aatcccccta tctgatgaat gaatctcatc ttgatcaaat gcttaaaatc tcacttcaaa
    12841 ttaatatttc ctatcatgaa aaaccaagcg tggaagacga ggctcaatac atctatcagt
    12901 acgcactcca tccactcaac atcaaactgt atcattcatt tttagcaaaa ggggtcccta
    12961 ttcaattacg cacctgggta ggaggtgata aggatgggca ctctggtgtt aatgaaaaaa
    13021 tcatgcttaa aagcctagag ctttctcgtt ctttttttat tgcctatatt caggaatgct
    13081 tagaagaagt gctggaaatc attaagcttt caactgcatt aggtaaaaac aaatccttgg
    13141 cagatcagat taatcagctt gttaaaaaag cgtatggtct taaaaagata caatcaaaag
    13201 atcatgaaaa aatatcggcg ttcaaaaatg aattgactgc tacacagata aatgcactaa
    13261 aatttttaaa tttcgaacct gagcaattct ccatcatctc cagtattttt catctgtatc
    13321 ccgctttggt catgcctata gagcttagag aggactcagc cgttgtaaaa gagagtttaa
    13381 caagcataaa aaaaacaaca attactaaaa tgcttgaaca ggtacactct ataactcatg
    13441 ggactgatcc taaaaactat atacgcggtt ttatccttag tatggttgaa tcagccgagg
    13501 atataaaaaa tggaattaat ctggttaaaa aagtttttaa aagctatgcc ttgccagttg
    13561 tgcccttgtt tgaaaatcaa cttgccctca ctaacgcaga tacaatatta aataattcaa
    13621 tcactgagga tatcagacag aagcatctca aacagtggga aggaaactat gaagttatgt
    13681 tgggttactc cgactcgtcc aaagaaaatg gagtactgcc ctctcggctt atgattgcga
    13741 aaagtttaaa aaacattcag tctaccctgg aaaataaaaa ccttcgtcct atcttttttc
    13801 atggttcggg cggtagtatt gagcgaggag gcggggatat caaagaacaa actgcttcct
    13861 ggtcgaagga aatgatgtct aattataaag tcactgtcca gggagaaatg gtagcaagac
    13921 tctttggttc cagttccata ctcaaaagtc agattgataa atttcttgat atctattcgc
    13981 agaaaggcaa aagcaataac aatgattatc cggaagagtt gtccttgttt tcgacaagag
    14041 ttagccagaa atataaaaca cttatccaaa gtgactggtt ttggcaaata gtagaacaag
    14101 cctcccctta tcattttctg aaagaattga aaattggctc tcgtccaacc aaacgaaaat
    14161 caggccctga tcaacgaaag cttcgcgcca tcccatggat tctgtgctgg actcaaacac
    14221 ggcttctttt tccaacctgg tggggtatag gttccacttg gtcagagcta aatggcattg
    14281 aaaaaaacag acttaaggct ctttataaag aaaatgctct ttttgctgct tttgtaaagc
    14341 aattaggtgt aaccctctcc aaggtttatc tacccgtctg ggaacagtac ctgcttcaat
    14401 tgactggctc tattgaatac ctaaggcctt ttcaatcaga actagagtca actatccagt
    14461 tcttctatca aataaccgat gagaaagatt tctgttttca ccaaccctgg cttggggaaa
    14521 gtattcaatt acgatcaaca ttgattcatc ctttaaatct tattcagatt gaagccatga
    14581 aaaggaaaga cttacctctt ttaagaaaaa cagtcacagg catttcttgt ggtatgttga
    14641 caacaggata atagaagcaa acagcgttat tgatgccact ctaatagagt ggcgatgtta
    14701 ttgtaaaact aatgaaattt gaacttaaaa gatatccagt gctcgtcatg gcaagtattc
    14761 tgtaaagaat agggataagt tgagaaatat aaaatataca ataaatgagt ttcagtatga
    14821 agataaaaaa tatcccttat tatgtcgcta cccgtgtcgt gaaacgaata cagtcatggt
    14881 tgggattgaa tactctgggt gcacgagcaa tagtgacgaa tgcagaggga cacgtgttat
    14941 tggtaaaaca tacctaccaa cctcattggt atttaccggg aggcggagta aaaaaaggag
    15001 aatcaaccaa ggctgcagta atccgtgaac tgcacgaaga agttggtctt gttgttgcag
    15061 aacaagacgt gattttattc ggcatttatc accacaaata tcttggagtt aatgattatc
    15121 cagtaattta tattgttaaa aactttacaa gtcatgtaac tcactcgggg gaaattgagc
    15181 agataggatg gttttccctt gatgcattac cggaaatggt gagcccggga accaaacgca
    15241 gactcggtga atattttgat aacaatccaa tatcagaaaa gtggtgatta ttgcagttgt
    15301 cattgttggg tggggtgctg agaaaatatg gttatgctca atctctaatt tgtcccgtcc
    15361 ctcttatcac ccatttgtag cttgttaaag cctctagtcc catgggtcct cttgcatgaa
    15421 ctttttgcgt actaattcca atttcagccc ctaatccgaa ttccccgcca tctgtaaacg
    15481 cagtagaagc gttggcatag acagctgctg catccacttc agttagaaat ttatcaattg
    15541 cagactcatc ttctgcaata acagcctcac tatgatggga actgaattgt tgaatatgat
    15601 caatagctgc ttttatattg ggtactgttt ttattgctaa tttatagtct agaaattcat
    15661 ggccaaagtc ttgtggtttt gccttaatta aaagttgttc aggataattc ttatctaaaa
    15721 catgatatgc atcctggtcg gcatagataa tcacattctt ttgagacaag gtctccacaa
    15781 gttctggcaa atcttttaaa cgatcagcat gaataatcaa agtatccagc gcattgcaaa
    15841 cacttactct tctggtttta gcattgttaa taattttttt accttttccc aaatctccac
    15901 ttttatcaaa ataggtatgc acgatacctg cccctgtttc aatgacaggt attttggcat
    15961 tgtctctgac aaaatttatt aaattctggc tccctcttgg aatgcataaa tcaacaagac
    16021 ctgtggcatt taataattga gtcatcaatg ctctttctgg tggtaataaa caaacaatat
    16081 ctgtgtttat attaaaattc tttaatgtat ttttaattaa taaaagcaga taactgttag
    16141 taaaatgtgc ttcttttcca ccttttaaaa tacaaacgtt tccagattta aagcataggc
    16201 tgaatatatc aatagttaca ttaggtcttg actcataaat gactgcgatg acacctaaag
    16261 gtactgtgat tttcttaata ctcaaaccat ttggcattga tttttcaaag agattaactc
    16321 ctaatgggtt aggtaaattg gctacttttc tcacatcatt caccaatgac aaaattctct
    16381 ctttatttaa caataaacga tcatatctgg gatcttgctc aagcattaaa cttaaatctt
    16441 tttgattttc ttgtattatg ttttcaatgt gcttctctaa attagccgct aatgttttca
    16501 aaattattgt tcgggtatca ctttgtatta agttaagatc agtagttgct tttttagcgg
    16561 cccttaattg gttagcaata ttagtattca ttttgatacc tatagaatat gcaattgatc
    16621 gtaatgtata aatgcaggct tattttgaag tctaagatag tcctttaatc ttaagaaatc
    16681 atacctggcg attccaactc ctatcttttc attgttggaa ttaaggatat caattaaatc
    16741 cccttttttg cattctccac gaaaatcttc tatccctatt ggtaaaatgc tcattacacg
    16801 attaccattt cgtaataagg taattaaatt atcattaatt actatagatg gtaaggaagt
    16861 tctatgacta aaagcaatcc atctctttat actggatttt cttttactag caagaattat
    16921 ggttccaact gcttccctat ttagaatttt tggaacaatg gattctacat ttacatttgc
    16981 gatcactgta ttgataccta aaccagccat ttttctggca gtatccagtt tggataccat
    17041 accacctcgg cctaattttg attttacagc agagacattg ggccaacctg aattggggtc
    17101 aattgtatta atgagttttg attcaggatc attgggatga gatgtaaaca caccatcgac
    17161 attggttaag agtattagat aatcagcatt aatttgagct gcaataagtc ctgctaattc
    17221 atcattatcg gtaaacatta attcttcaat ggctaccgaa tcattttcat taacaatagg
    17281 gataatattt tgatgcttta gcaattctgt taataaacgg gcaatattta aataatgctg
    17341 tctagtatgg aagtcttgtt tggtaagtaa taactgagat actaaaatgt tttcattttt
    17401 aaacaagcta gaatagagat tcatcagttc gggttggcct attgaagcca agagttgctt
    17461 ctctcccact gtatcgccat atgtttttcc cagagagttc ttagctattt ttcgaccaga
    17521 gcccacagcc ccagagctta ctaaaatgac ctgatgcccc aggttcttta aataaataat
    17581 ttgatttaca agattattga gtacggaata gattggactt ccgtcgaccg ataaaatact
    17641 ttgtgttccg acttttataa taattttcat ttcatatttc taaacaagct tttcttaata
    17701 tcaagaatat cagtatgctt taaatttgtc tttccaataa tcataaagat cccataatac
    17761 ttattctggg caaaaaccat tttttttatc gctatgggta tatactattt tagttacctt
    17821 caaacatgac cacaccagat tcaaactaag gtttattaag ggcattacaa gatctg
//
LOCUS       DACVWI010000052        17665 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.052, whole genome shotgun sequence.
ACCESSION   DACVWI010000052 DACVWI010000000
VERSION     DACVWI010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 17665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17665
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.052"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            1..1176
                     /locus_tag="JBH85_06475"
     CDS             1..1176
                     /locus_tag="JBH85_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAU0945843.1"
                     /translation="MPKLILLGDSTLDNFNWVPNKATVTDHLRRQLPKMEILNFAVDG
                     FTTDSILYGEYKDCAVTSSQHTHKYFEPLKALENEQDVEHIVLSVLGNDFRIQLSKLI
                     FMAPEERPKAIEQLINHIIKNYIQVVKEIRKVQPNAKLSIVLQYTPYVENDPYLIYFL
                     MDKLFHHGTVSHGFLSYLQIMYYSIFGLNSKHEQQALNLLHKLMAKVYRNVFNELGDN
                     SLAIIDLASSFDYRNSKLYKAQIEPSDEGGKLIASLITHTITHHDFQNESMLYAKPPL
                     QPNPKILAVPLTKLKKDWFPQQIYVTQEQAITAFKQAYLLQLNKDRQSYLGLYSFFAR
                     SNVDFEHATLEKLIVHAQNYSTKKTGYRTLKVMQNLGWLTEQGNIKEESGIVRLLKN"
     gene            complement(1277..2461)
                     /locus_tag="JBH85_06480"
     CDS             complement(1277..2461)
                     /locus_tag="JBH85_06480"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HAU0945844.1"
                     /translation="MTDVYVVDVLRTPVGKAPRGVFKNTLPDDLLAHTIKCLIHRHQN
                     IDWQEIADVVIGCAMPEAEQGMNVARIASLLADLPQSVPAMTINRFCSSGIQSIVTAA
                     DTIRNQEAHLALGGGVESMSMVPMGGNKYTANPSIFNDEHVAIAYGMGITAENVAKRW
                     EITREQQDEFAIESHKKAIAAQERLDFNAEISPIEISIRYPDLKTSKVEIKKKLINKD
                     EGPRADTSYEAISKLKPVFALNGTVTAGNSSQTSDGAGVALLASEKALKQYDLKPLGR
                     LMSYAVAGVPPEIMGIGPVKAIPMALKRAGITLDQLDWIELNEAFAAQALAVIKDLDL
                     PREKVNPLGGAIALGHPLGATGTIRTATLLHGLRRTKGRYGMVTMCIGTGMGAAAIFE
                     SL"
     gene            complement(2477..4846)
                     /locus_tag="JBH85_06485"
     CDS             complement(2477..4846)
                     /locus_tag="JBH85_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA
                     hydratase family protein"
                     /protein_id="HAU0945845.1"
                     /translation="MQEPFFIKKVAVLGAGVMGAQIAAHCVNAGIETLLFDLAGKEGP
                     KNSLVDKAIANLGKLKPTPLATPQTNELLQAKNYAENLEELSSCDLVIEAIAERVDWK
                     EDLYKRISPYLSDKTILVSNTSGLSINKLCEVLPAQHRSNFCGVHFFNPPRYMHLAEL
                     IPANTTSSDLLDYLETWLTEYLGKGVVRAKDTPNFIANRIGVFSLLTTLHHTLAMNMG
                     IDEVDALTGPLLGRPKSATFRTMDVVGLDTMQHVINTMQSQLTGDPWHKMFILPDWLN
                     GLIKEGHLGQKSGQGIYRKAGKVIEVYDIQTGQYRPSRAEVSDELKAIMDIKDPEARM
                     KNLMASNNKQAQFLSACFRDLFHYCAYHLEEIADNARDVDLAIRWGFGWSQGPFETWQ
                     LSDLHSVTRQIDESIQDNTALSSAKLPEWLYEIKEFYTREGAYSPGKNNYHARSQLPV
                     YHKQFFHDRVLKESHHPVHVIYENEGVCLWYLKDDVAVISFKSKANTIGQSVLDGIET
                     ALDIAERDYQGLIIYQQDASNFSSGADLRGVSKLLTDGTIQALEHMVEQFQRVAMRLK
                     YSSIPTVAALRGRALGGGCELMMHCDSIVAAFESYPGLVEAGVGVIPAGGGCKELAMR
                     SAHHAQQADLLTFILPVFQQIATAKVAASAVEARNMGYLRAADSILMHADEVLYASLE
                     KIKAMRAANYLPPMKKQRFKVAGIEGHARLQSGLVNWLEGGFISQHDYFLANELAKVL
                     CGGDVNHGTLVDEQWMLKLEREAFIKLANTSLTQARISHLLETGKPLRN"
     gene            complement(4966..6486)
                     /locus_tag="JBH85_06490"
     CDS             complement(4966..6486)
                     /locus_tag="JBH85_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HAU0945846.1"
                     /translation="MDLLQRLNIKSVNPGAFSGHGWHSVNHAHTLESFNPSTGNKIAE
                     IATCTMDDYEQVMQRAEQAAQAWRKVPAPKRGEIIRQIGQVLRENKDSLGSLVSLEMG
                     KSKQEGDGEVQEMIDIADFAVGQSRMLYGNSMHSERPNHRMYEQWHPYGIVGVISAFN
                     FPVAVWSWNAFLSAICGNVTIWKPSAKTPLCAVAVQHICNQVLKENNCPEIFGLIIPN
                     SHDVVEAMVDDKRIQLISFTGSTAVGKQVAAKVAARLGKSILELGGNNGIILDESADL
                     NLAIPAIVFGAVGTAGQRCTTTRRLFVHESKYQDVIKRLRHAYEQITIGDPLDTRNLM
                     GPLIDLQAVEQFKKAINRIKAAGGQIVYGGEILKQAGSFVQPTLVCDVKNDWDIVQEE
                     TFAPILYVMSYRTLDEAIALHNGVPQGLSSALFTQNLKNAERFLSACGSDCGIANINI
                     GTSGAEIGGAFGGEKETGGGRESGSDSWKAYMRRQTNTINWGDELPLAQGIRFNLS"
     gene            complement(6496..7632)
                     /locus_tag="JBH85_06495"
     CDS             complement(6496..7632)
                     /locus_tag="JBH85_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HAU0945847.1"
                     /translation="MIICVGLSSFTKEKDCMYNVMITGAGKIGSLIACLLADSGSYQV
                     HLADLEFNGSDVTRLLTALPEIKTVALDVKDEQSTQAYLQKHNIIAVISSLPYFLNTH
                     VAKAAKAAKAHYFDLTEDTSVTEAVKAIAQNAETAFVPQCGLAPGFISIAANSLMQEF
                     EKCHHARLRVGALPQRANNALHYSLTWSTDGVINEYGNPCYGIEGGKDVVMAPLEGLE
                     SIQIDGCEYEAFNTSGGLGSLAELYAGKIQSMNYKTMRYPGHCKKMRFLMNDLRLNED
                     RGTLKRILENAIPKTYQDIVIVYVTVEGIKQGELTEKSYVKKIYPEVIRGLEWSAIQV
                     STASGVCAVVDLVLGQGNEYKGLILQEKFKLSHVLENRFGKYYA"
     gene            7739..9274
                     /gene="lnt"
                     /locus_tag="JBH85_06500"
     CDS             7739..9274
                     /gene="lnt"
                     /locus_tag="JBH85_06500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HAU0945848.1"
                     /translation="MKQAALIHSTIINTSTLNQYSKFVVVFLAGLLAPLGFAPFHLPG
                     LTILSLAILFSEFLQCTVKQGFSLGFLYGLGYFGFGVSWVIISIHDYGQLDYFLAGVI
                     TLLFIMYLSLFPGIVGYSFKLLSTKCNLLTCMLLFSTLWCIAELIRSKLFTGFPWLLA
                     GITQIDTPLRYIAPVVGVYGLGLICSFLGTLLVLIIKDNTIKRYYYLSVFILILIAPS
                     LGKNIHWTEIKKEPISVGAIQPNLSMRDKWDETLFWDLLKYYENKTDKLLGKNLIVLP
                     ESAIPLPASYVEDYLQKLHEKALKAKSSLILGILQPTDNDETNFYNSIISLGEATGAY
                     VKRQLVPFGEYIPKPFIPINRWLNLPEPNVVPGRSNQPLINIANHPIASLICYEIAYP
                     NILRSQMPAAQWIVSISDNGWFGHSLASYQQLQMAQMLSLLTGRYQILVNNDGLSSVI
                     NHQGTIVEGLPAFNSGMLQTDIFPANGITPWIIWSDYPTFVFCFIFVLFVLFFNIKRF
                     TEK"
     gene            9340..11811
                     /locus_tag="JBH85_06505"
     CDS             9340..11811
                     /locus_tag="JBH85_06505"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HAU0945849.1"
                     /translation="MDNTYNPQEVEEQAQQYWHKKQSFNVTEDLNKEKFYCLSMFPYP
                     SGTLHMGHVRNYTLGDVIARYQRALGKNVLQPIGWDAFGLPAENAAIKNKIPPAEWTR
                     KNIAAMKEQFLRLGNAYDWKREITTCDPEYYRWEQWFFIRLFEKGLVYKKNAVVNWDP
                     VDQTVLANEQVVDGRGWRSGALVERKEISQWFIKITSYADELLSSLDSLDEWPAQVKQ
                     MQRNWIGKSIGTEIYFNVNNYPKRLKIYTTRPDTLMGATYLAVATDHPLAKEAASNNK
                     KVQEFLDSCQGIKIAEAELATMEKRGIDTGMTAIHPITGKELPIWVANFVLMQYGSGA
                     VMAVPAHDQRDWEFAQKYQLPVKQVIKPIDIEHDFNQSAYTEEGILINSNQFDNLLSS
                     KAIQVITNFLEENDAGKATINYRLRDWGVSRQRYWGTPIPMIICEQCGIVPVPDEELP
                     VVLPENVDFTGTGSPLTQCKEFVNVTCPKCGQDATRETDTFDTFVESSWYYARFACKG
                     QENAMLDDRAKYWTPVDQYIGGIEHAVMHLLYARFFHKLMRDEGLVNSDEPFKALLTQ
                     GMVLKDGHKMSKSLGNVVDPNHLINTYGADTARLFVMFASPPEQSLEWSDSGVEGAHR
                     FLKRVWAFSHQHRDMLIDINDSILSGNGHVDWKEAESRLKKSRHIVHQILAQATHDYD
                     RNQFNTVVSGCMKLFNEISDYSIETENDKFFIHSSISILLRLLAPITPHICHCLWQQL
                     GFDKAIIDAPWPKVDKSALKTDEVDYVVQVNGKLRAQFTASTDATEEELIAAAKEHAH
                     NFVVNHTIKKAIIVPHRQLINLVIG"
     gene            11913..12404
                     /locus_tag="JBH85_06510"
     CDS             11913..12404
                     /locus_tag="JBH85_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945850.1"
                     /translation="MTQIHKYLASLILIWLLTGCGFHLRGAIDIPEWLDNVSIISRDG
                     NKELVSILKSQLEGYKIDVNSDPSLAKYWLIINSSSLQQQIVSIGASTNPRQYQLILT
                     IEFMLQTPKGQIIKTPRKVNVSRQLTVNNDRILGSNEEQALLVSEMRRDAAIQIINRL
                     NRP"
     gene            12406..13431
                     /gene="holA"
                     /locus_tag="JBH85_06515"
     CDS             12406..13431
                     /gene="holA"
                     /locus_tag="JBH85_06515"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HAU0945851.1"
                     /translation="MQINQQALTQLLQKKIHHLNVLIGQDHYLIDEALNNIKSMLKKS
                     SECDEKILSIQSPEEWHVVLEETNNYSLFYQTVILTIFFDKKTIDTTGKKILSEYLKS
                     ANSHSYIIIRAPNLTAKQLQWLTHDEQALIIIAQPLSSEAMKRWINEQLKLNTISFDP
                     YVPELIYQYTKGNMLATAQVIEKITLSNTPGTLITPYLALEHLSDQCDFSLFELIDSC
                     LLGHSDRAIHILRQAANNKTEVTLVLWMLTQEIRTLLQLLFLMQQKMDIKMASNQLKI
                     WTQRVNLYQSAIKRLNPLLLQQLHHYCQSIDDKIKSNSNNQVWNALENISLSLCLGQL
                     LGDACIA"
     gene            13419..14054
                     /gene="nadD"
                     /locus_tag="JBH85_06520"
     CDS             13419..14054
                     /gene="nadD"
                     /locus_tag="JBH85_06520"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HAU0945852.1"
                     /translation="MHSIAIFGGTFDPVHNGHIKTSLAIQANFGFDSYYFLPCKSPAI
                     KPPSFASSEQRVEMLKLALKPYPDFKIDTRELDRDTPSYMVYTLQSFRQEYTDSSLTL
                     IIGYDGLLNLPQWYQWEKIISLANLLVINREEFFQQPVPKSVQTLLNQYRNDDKNILL
                     NHHAGSICLYNAGHYDISSTKIREQLKQHKDVKNNLPDLVYDYIKKQELYQ"
     gene            complement(14029..14562)
                     /locus_tag="JBH85_06525"
     CDS             complement(14029..14562)
                     /locus_tag="JBH85_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HAU0945853.1"
                     /translation="MQLQWVDIAIVAIIALSVLTGLFRGFVKELVALCVWVLAIWLGF
                     NYSQSLDPWLSSYIEEQSVRTAIGFIIILFATLFVGGVVNAILSFILKRAGLSGTDRT
                     LGMGFGFLRGVFIVALIMVAVKMTSLPYQEYSQKSKLYARFDPVVALLYSHLPEFIKQ
                     VKAVDKTENIIDTVPAS"
     gene            complement(14565..15335)
                     /locus_tag="JBH85_06530"
     CDS             complement(14565..15335)
                     /locus_tag="JBH85_06530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HAU0945854.1"
                     /translation="MKLIMDEKVKHRLIGLAVIISLGAIFAPALIKKSSQSPESNFSV
                     NVKLPPKPLPPDVVITDEKEVFKTIKVAKTEIPPIPVEKKSINLAKAEPISTEEDNLI
                     RTSKVATLEAERENSIKSEPIKLAVNKAANATAKKVMTLTAAKPPVKASPVVTAKVST
                     SKKVSQIVAARKPAVKQDIYAVQLASFTQIANAQALVNRLRSKGYKANYLKSNSRNGI
                     VYKVVVGHSPVKKDVIKLKTQLASAMQLNGFVVNTGVS"
     gene            complement(15332..16618)
                     /gene="folC"
                     /locus_tag="JBH85_06535"
     CDS             complement(15332..16618)
                     /gene="folC"
                     /locus_tag="JBH85_06535"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HAU0945855.1"
                     /translation="MHAPWSEWDLNHWLTHLETRNTQEIQLGLTRVLTVAQKLNLQRP
                     NCKVITVAGTNGKGSTVTALETIYHQSGFRVGTYTSPHLLVFNERIRINLTPIQDKDL
                     CKAFSVIEEARYPTNLTYFEMATLAALWYFKQHDLDLIILEVGLGGRLDATNIVDTDL
                     AIITTIDFDHQSFLGDTLELIGYEKAGILRKNKPFIYADLSPPKSIVEFAVQLGASSY
                     LYGKDYFYQEEADHWGVTCQGKLFEQLTRPKIQLRSAAAAVMACYLMQNDLPVSYKNL
                     KKAMELIYIPGRLQLQKGKTDILYDVSHNLQSVRLLADTVKKINVKGQIHAVFSALKD
                     KDLYGLIMPLRDCVNRWYPAQLHNKRAASQEELLSVFREAEIFLDVCYNDPFTAFEMA
                     LKQASDDDLIIVYGSFFTVSHVMAAQHNLLEQKENQ"
     gene            complement(16599..17483)
                     /locus_tag="JBH85_06540"
     CDS             complement(16599..17483)
                     /locus_tag="JBH85_06540"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HAU0945856.1"
                     /translation="MSWLKKLLPSRIRTETSQKKGVPEGLWVKCSGCNEVLYSTELAK
                     NFMVCPSCNFHHRISARLRIAQFLDESGQEEVAAGLEPQDRLKFRDSKKYKDRISQAQ
                     KATGEKEALIVVKGFLMQQPVVVSAFEFNFMGGSMGATVGEKFVRAVNVAATEKRPYI
                     CFTASGGARMQEGLFSLMQMAKTSAALAKFAETGLPFIVVLTDPTMGGVSASFGSLGD
                     IIIAEPNALIGFAGPRVIEQTVRQTLPEGFQRSEFLLEHGHIDMIVERKHLRATISEL
                     VSKLTHKGAESFFARAME"
BASE COUNT         5476 a         3709 c         3048 g         5432 t
ORIGIN      
        1 atgccaaaat taattttatt aggagactcc actcttgata attttaattg ggtgccaaat
       61 aaagctactg taactgatca cttaagacgt caattaccaa aaatggaaat tcttaatttc
      121 gctgttgatg gatttacaac tgactcaata ttatatggag aatataaaga ctgtgccgtt
      181 acttcatccc aacataccca caaatatttt gaaccactta aggcgttaga aaatgaacag
      241 gatgttgaac atatagtttt gagtgttttg ggtaatgatt ttcgcattca gttaagcaag
      301 ctaattttta tggctccaga agagagacca aaagctattg agcaattgat aaatcacata
      361 ataaagaact atattcaagt tgtgaaagaa attagaaaag ttcaacctaa tgcaaaatta
      421 agtatagtat tgcaatacac accatatgta gaaaacgacc cttatctaat ttatttttta
      481 atggataaac tttttcatca cggaacggtt tctcatggtt ttttatccta tttacaaata
      541 atgtattatt ctatatttgg tttaaattct aaacatgaac aacaggcgtt aaacctgctc
      601 cataaactaa tggcaaaagt atatcgaaac gttttcaatg aacttggtga caactctttg
      661 gccattattg atcttgccag tagttttgat tatcgaaata gcaaattata taaagctcaa
      721 attgaaccta gcgatgaagg aggtaaattg attgcctctt taattacaca tacgattaca
      781 catcatgact ttcaaaatga atccatgctc tatgccaaac cacctttaca gcctaatccg
      841 aaaatactgg cagtcccttt aaccaaactt aaaaaagatt ggtttcctca acaaatatat
      901 gtaactcaag aacaagcaat aactgctttt aaacaagctt atttgttaca gctaaataaa
      961 gatagacaat cttatttagg tctatatagt ttttttgctc gcagtaatgt agattttgaa
     1021 cacgcaactt tagaaaaact tatagtacat gcgcaaaact attcaactaa aaaaacaggg
     1081 tatcgcacat taaaagttat gcagaatcta ggttggttga cggagcaagg aaatataaaa
     1141 gaagaaagtg ggatagtaag gctattaaaa aattgaacta tatgtagtag ttcaaatctg
     1201 atgatagtaa ccagttcggg gcgccaagca aaacttagtg cccgctaaca ttatagattg
     1261 aattaaaatg atatatttat agcgattcaa atatcgcagc agctcccatt ccggttccaa
     1321 tacacatggt taccataccg tagcgccctt ttgttcttct caatccatgt agtaatgtag
     1381 ctgttcttat ggtgcccgtt gctcctaaag gatgccccaa agcaatagcc ccacctaaag
     1441 ggttaacttt ctctctgggt aggtcaaggt ctttaataac cgccaaagct tgggcagcaa
     1501 aagcttcatt caattcaatc caatccaatt gatctaaagt aattccagcg cgctttagcg
     1561 ccataggaat tgcctttact ggtccgattc ccatgatttc aggcggtact cccgcaacgg
     1621 catagctcat taaacggcct aaaggtttta aatcatactg ttttaaagcc ttctcactgg
     1681 ctagtaatgc cactccggct ccgtcactcg tctgagaact atttcctgca gtcactgtcc
     1741 cgtttaaagc gaataccggt tttaatttag aaatcgcttc gtaagatgtg tctgctctag
     1801 ggccttcgtc cttatttatc aattttttct ttatttcaac ctttgaagtt ttcagatcag
     1861 ggtatcttat agatatttcg attggactta tttcagcgtt gaaatcgagt ctttcctgcg
     1921 cagcaattgc ttttttatgg ctttctatgg cgaattcatc ctgttgttct cgagtaattt
     1981 cccaacgctt tgcaacgttt tctgctgtaa tccccatgcc ataagctata gcaacgtgct
     2041 catcattaaa aatggatgga ttcgccgtgt atttatttcc acccataggt accatggaca
     2101 tactttcgac accgccacct agtgctaaat gagcctcctg attacggatt gtatctgctg
     2161 cagtaactat actttgtata ccagatgagc aaaaacgatt aatagtcatt gctggaacag
     2221 attgtggaag atcagccaat aaagaagcga ttctggctac attcatacct tgttccgctt
     2281 ctggcattgc acaacctatt actacgtcag ctatctcttg ccaatcaatg ttttgatgtc
     2341 tatgtattaa acatttaata gtatgagcca ataaatcatc aggtaatgtg tttttaaaaa
     2401 cacctcttgg tgctttacct actggtgtac gtaatacgtc aactacatat acgtcagtca
     2461 tcctaattct ccttgcttag ttgcgcagtg gtttaccagt ctctaacaga tgactgattc
     2521 tggcttgggt taatgatgta ttggctagtt ttatgaatgc ttctctttcc aactttagca
     2581 tccattgttc atcaaccaag gttccatgat tgacatcccc accacacaac actttcgcca
     2641 attcattcgc cagaaaataa tcatgctgtg atataaatcc accttccaac caattcacta
     2701 aaccggattg taatcgggca tgcccctcta tacctgccac tttaaatcgt tgttttttca
     2761 taggaggaag ataattagca gctcgcatgg ctttgatttt ttctaaagag gcatataaaa
     2821 cctcatcagc atgcattaga atagaatcag ccgcacgcag atatcccata tttctggctt
     2881 ccaccgcact tgcagctact tttgcagttg ctatttgctg aaaaactggc aatataaaag
     2941 ttaataaatc agcttgttgg gcatgatgtg ctgaacgcat agcgagctct ttgcaaccac
     3001 caccagcagg tataactcct actccagcct caactaaacc gggataagat tcaaaagcag
     3061 caacaataga atcacaatgc atcattaatt cacaaccacc tcctaatgct cgacctctta
     3121 aagcagctac agttggaatt gaactatatt ttaaccgcat tgctacccgt tgaaattgct
     3181 ctaccatatg ctcaagagct tgtattgttc catctgttaa taatttggag acgccacgta
     3241 gatcagctcc tgaactaaaa ttggatgcat cttgttgata aataattaat ccctggtaat
     3301 ccctttctgc gatatccaaa gcagtctcta tgccatcgag aactgattga ccaattgtat
     3361 tggctttgct tttaaaacta atcacagcca catcatcttt taagtaccac aaacaaacac
     3421 cctcattttc ataaataaca tgaacaggat gatgtgactc ctttaatacc ctgtcatgga
     3481 agaattgttt atggtaaaca ggtaactgac ttctggcgtg ataattgttt ttaccaggcg
     3541 aataagcgcc ttctcgtgtg taaaattcct ttatttcata taaccactca ggtagttttg
     3601 cgcttgataa tgccgtatta tcctgtattg attcatcgat ttgtcgagtc acactgtgta
     3661 aatcagaaag ctgccaagtt tcaaatggtc cttgcgacca tccaaatccc cagcgaattg
     3721 ccagatcaac atctcttgca ttatcagcaa tttcttccaa atgatacgca cagtaatgga
     3781 ataaatctct aaagcaagcc gacaaaaatt gagcttgctt attatttgat gccattaaat
     3841 tcttcattcg agcttcagga tctttaatat ccattatcgc tttcagttca tcactcactt
     3901 ctgctcgaga gggtctatat tgaccggttt gaatatcata aacttctatt actttacctg
     3961 cttttcggta aattccttgg ccagattttt gccctaaatg accttcctta attaaaccat
     4021 tcaaccagtc cggcagaata aacattttat gccatggatc accagttaat tgagactgca
     4081 tggtattaat aacgtgttgc atagtatcca aaccaaccac atccatggta cgaaaagttg
     4141 cagatttcgg tcttcctaat aatggaccag tcaaggcatc cacttcatca attcccatat
     4201 tcatggctaa agtatgatgc aaggtagtta atagtgaaaa gactcctatt cgatttgcga
     4261 taaaattggg agtgtctttc gctctcacaa ctcctttgcc caaatactcg gttaaccatg
     4321 tttccaaata atcgagcaaa tcagatgatg tagtattggc aggaattagt tctgccaaat
     4381 gcatgtaacg cggtggatta aaaaaatgga ctccacaaaa attggatcta tgctgcgcag
     4441 gtaatacctc acatagctta ttgatactta gccctgatgt attactaact aaaattgttt
     4501 tatcagataa ataaggcgaa attcgcttgt ataagtcctc tttccaatct acacgttccg
     4561 ctatcgcctc tatgactaaa tcacaagaag ataactcttc caaattttcc gcataatttt
     4621 ttgcttgtaa taactcattg gtttggggag ttgcaagagg agttggtttt agtttaccta
     4681 aattggcaat agctttatcg accaagctgt ttttaggccc ttctttgcca gctaaatcaa
     4741 acagtaaagt ctctattccg gcattaacgc agtgtgctgc aatttgagca cccatgacgc
     4801 cagcccctaa aactgcaact tttttaatga aaaaaggctc ctgcattgtt attatcctct
     4861 tgttaataat cgattgatgc ctctatgagt cagatttaca ggtaacaggc acttaccatt
     4921 ggctaaaagg agcaataatc tgttgatctc gcccctttct acatcttaac ttaaattaaa
     4981 acgaataccc tgagccaagg gcaattcatc tccccaatta attgtattgg tttgcctcct
     5041 catataagct ttccagctat ccgaacctga ttcacgtcca ccaccagttt ctttttcgcc
     5101 tccgaaagca cctccaattt cagcccctga agtgccaata ttaatattgg caataccaca
     5161 atcacttcca caagcactga gaaagcgctc tgcatttttt aagttttggg tgaataaggc
     5221 tgaagaaagc ccttgaggaa cgccattatg taaagcaata gcctcatcca gtgtccgata
     5281 ggacataaca tatagaatag gagcaaaagt ctcttcctgc acaatatccc aatcgttttt
     5341 tacatcacaa actaaagtag gctgcacaaa ggagccagct tgttttaata tttccccacc
     5401 ataaacaatt tgacctcctg ccgctttaat tctatttatt gcttttttaa actgttcaac
     5461 agcttgcagg tcaatcaaag gacccattaa atttcgtgta tcgagtgggt caccaatagt
     5521 tatctgctca taagcatgtc ttagcctttt gataacatcc tggtattttg attcatgaac
     5581 aaacaggcgt ctcgtagtag tacaacgttg gccagcagta cctacagcac cgaatactat
     5641 ggcaggaata gccaggttca aatcagcaga ctcatcgagg atgatgccgt tattacctcc
     5701 caactccaga atgcttttac ccagtctggc agcgactttt gctgctactt gctttccaac
     5761 tgcagtagag cctgtaaagg atattaactg tattcgttta tcatcaacca tggcttcaac
     5821 cacatcgtga gaattgggaa tgatcaagcc aaatatttca ggacaattat tttctttcaa
     5881 tacctgattg caaatatgtt gtactgccac tgcacagaga ggtgtttttg ccgatggctt
     5941 ccatatagta acgttgccac aaatagcaga taaaaatgca ttccatgacc atacagcaac
     6001 aggaaagtta aatgctgaaa tcaccccaac aattccgtat ggatgccatt gctcatacat
     6061 tcggtgattt gggcgttctg agtgcatgga attaccatac aacatgcgcg attgccctac
     6121 agcaaaatca gcgatatcaa tcatttcctg aacttcgcca tcaccttcct gtttggattt
     6181 acccatttcc agcgatacca gacttcccaa gctatcttta ttttctctta gtacttgccc
     6241 tatttgcctg atgatttcac cccgctttgg agctggcact tttcgccagg cttgcgctgc
     6301 ttgctctgct cgctgcataa cctgctcata atcatccata gtgcaagttg ctatttcagc
     6361 aattttattc ccagtactgg gattgaagga ttccagagta tgggcatggt tgacactatg
     6421 ccaaccatgt ccactaaagg ctccggggtt tactgattta atatttaagc gttgcaataa
     6481 atccataaga ctctcctagg cataatattt gccgaagcga ttttccagca cgtgggacaa
     6541 tttaaatttt tcttgcaaaa taagcccttt atattcattt ccctgtccca ataccaaatc
     6601 aacaacagcg catacgcccg aagctgtact gacttgaata gctgaccact ccaaacctcg
     6661 aattacttca gggtaaattt tcttgacata acttttttcg gttagttcgc cctgcttaat
     6721 accctcaaca gtaacataaa ctatcacgat atcctgatat gtttttggaa ttgcattttc
     6781 cagtattctt tttaacgtcc ctcgatcttc atttaatcgt aagtcattca ttaaaaagcg
     6841 cattttttta caatgacctg gataacgcat ggttttgtaa ttcatcgatt gtatttttcc
     6901 agcataaagt tcagccaagc ttcccaaacc accggacgtg ttgaacgctt catattcaca
     6961 accatcaatc tgaattgact ccaatccttc cagcggagcc ataaccacat ctttaccacc
     7021 ttcaatacca tagcaaggat taccatattc attaataacc ccatcagtag accaggttaa
     7081 tgaataatga agcgcattat tagcacgctg tggcaatgct ccaactctta gtctggcatg
     7141 atgacatttc tcaaattcct gcatcaaact attagccgca atactgataa agccaggtgc
     7201 taatccacat tgaggaacaa aagctgtctc ggcattttga gcaatagctt ttactgcctc
     7261 cgttacagaa gtatcttccg ttaaatcaaa ataatgagct ttggcagctt tggcggcttt
     7321 ggcaacatga gtatttaaaa aatagggaag actcgaaatc actgcgataa tattgtgctt
     7381 ttgcaaatag gcctgagtgg attgttcatc tttaacatcc aatgcaaccg ttttaatctc
     7441 aggcagcgca gttaataatc ttgtcacatc agagccatta aattccagat cggccaaatg
     7501 aacctgataa gacccactat cggcgagtag acaagcaatt agactgccta ttttcccagc
     7561 accagtaatc attacgttgt acatacaatc cttctccttt gtaaaacttg ataatcctac
     7621 acaaattatc agagattaga tagatccaaa acatgatcaa tacagcaatt cttgatatca
     7681 cttgaccaat tagtcttact catttatctt gaccacttta atttagtcta gttgtgacat
     7741 gaagcaggcc gctttgatac attcgacaat aataaacaca tcaacactaa accaatattc
     7801 gaagttcgtt gttgtatttt tagcaggttt attagccccc ttggggtttg cacctttcca
     7861 tctgccagga ttaactattt tgagtctggc cattttattt tctgaatttc ttcaatgcac
     7921 ggttaagcag ggattttccc ttggtttcct atacgggtta ggatactttg gcttcggagt
     7981 atcatgggtg attatcagca tccacgacta tggacaactt gattactttc ttgctggcgt
     8041 tatcacctta ttgtttatca tgtatctttc tctgtttcct ggaatagtcg gttattcctt
     8101 taaactcctt tcaaccaagt gtaatttatt aacatgcatg cttttgttta gcactctttg
     8161 gtgtatagct gagcttatcc gttccaagct ttttactggg ttcccctggc tattagcagg
     8221 tataacccaa atcgatacac cattgagata tattgcacca gtagttggtg tttatgggct
     8281 tggattaata tgttcttttt tgggtaccct actggttctg ataattaaag acaatacgat
     8341 taaacgatat tactacctta gcgtttttat cttgattctt attgcaccat cactggggaa
     8401 aaatatccat tggacagaaa tcaagaaaga acctatttct gtcggtgcaa tccagcctaa
     8461 tctctcaatg agagacaagt gggacgaaac tctcttttgg gatttattaa aatactatga
     8521 aaacaaaaca gataaactgt taggaaaaaa tttaattgtt ttacccgaat cagccatacc
     8581 cctaccagca agttatgttg aagattacct acagaaactg catgaaaaag cattaaaagc
     8641 caaaagcagt ttaattttgg gaatcttgca acctacagat aatgatgaaa ccaattttta
     8701 caattccatc attagcttgg gggaagctac aggagcctat gtgaaacgcc aattggtacc
     8761 atttggagaa tatataccaa aaccctttat ccccatcaat cgttggttaa atcttccaga
     8821 acctaatgtt gttcccggca gatcgaatca gccattaatt aacatagcta atcatcccat
     8881 tgccagtcta atttgctatg aaattgctta cccaaatatc ttgagatcac aaatgcctgc
     8941 agctcaatgg atagtctcta tcagtgataa tggctggttt ggccattccc tggcaagcta
     9001 ccagcaatta caaatggctc aaatgctctc tttgcttaca ggacgatacc aaattctggt
     9061 gaataatgat ggactctcct cagtaattaa ccaccaagga actattgtcg aagggctacc
     9121 agcttttaat tcaggaatgc tccaaacaga tatttttcct gcaaatggca tcactccctg
     9181 gataatttgg agtgactatc ctacttttgt tttttgtttc atatttgttc tttttgtttt
     9241 gttttttaat attaaacgat ttacagaaaa ataatctatt gctggcaaag gcaagagggg
     9301 ttatccttag cagttccgtg ttattaaatt tattggccta tggataatac ctataacccc
     9361 caagaagttg aagaacaagc acaacaatat tggcataaga agcaatcatt taatgttact
     9421 gaagatttaa acaaagaaaa gttttattgc ttatccatgt ttccctatcc cagtggcaca
     9481 ttgcatatgg ggcatgtgag aaactatact ctcggtgatg tcatagcccg atatcagcgg
     9541 gcattgggaa aaaatgtcct gcaacctata ggatgggatg cttttggcct accagccgaa
     9601 aatgcagcca tcaagaataa aattcctcct gcagaatgga ccaggaaaaa tattgctgca
     9661 atgaaagagc agtttttacg cttgggaaat gcctatgact ggaaaagaga aattactacc
     9721 tgtgatcctg aatattatcg ctgggagcaa tggtttttta ttcgtttatt tgaaaagggc
     9781 ttagtttaca agaaaaacgc tgttgttaac tgggatcctg ttgatcaaac agtattagct
     9841 aatgaacagg tagttgacgg tcgcggctgg cgttcaggtg ctttggttga gcgcaaggaa
     9901 atttctcagt ggtttattaa aattacctcc tatgctgatg agcttttaag ctctttagat
     9961 agcctggatg aatggcctgc acaagtaaaa caaatgcagc gcaattggat tggcaaatcc
    10021 ataggcacag aaatttactt caatgtaaac aattatccca aacgattgaa aatttacact
    10081 actcgcccag atacattgat gggagcaacc tatcttgctg tggcaacaga tcatccatta
    10141 gcaaaagaag cggcttccaa caataaaaag gttcaagaat tcctcgatag ttgtcaagga
    10201 attaagatag ctgaagcaga actggcaact atggaaaaac gagggattga cactggaatg
    10261 actgcaatcc accctataac gggtaaggag ttacccatat gggttgctaa ttttgtttta
    10321 atgcaatatg gttctggtgc agtcatggca gttcctgcac atgatcagcg cgattgggag
    10381 tttgcgcaaa aataccaatt acctgtcaaa caggtaatca agcctataga cattgagcat
    10441 gactttaatc aatcagctta tactgaagaa ggaattctga ttaattcaaa tcagtttgat
    10501 aatctactct ctagtaaagc cattcaagtc atcacaaact ttctggaaga aaatgacgct
    10561 ggcaaagcta ccattaatta ccgtttaaga gattggggcg tttccaggca aagatactgg
    10621 ggaaccccta tccccatgat tatctgcgaa caatgcggta ttgttccagt ccctgacgaa
    10681 gaattacctg ttgttctgcc agagaatgtt gattttaccg gtaccggctc tccacttaca
    10741 caatgcaaag agtttgttaa tgtaacatgt ccaaaatgcg gtcaagatgc aactcgagaa
    10801 acagatacat ttgatacctt tgtcgaatct tcatggtact atgctcgctt tgcttgcaaa
    10861 ggtcaggaaa atgccatgct tgatgaccga gccaaatatt ggacaccagt agaccaatac
    10921 atcggtggaa ttgaacatgc agtgatgcat ctgctgtacg ctcgattttt tcataaattg
    10981 atgcgcgatg aaggattagt taattcggat gaacccttta aggctttatt aactcaaggt
    11041 atggttttaa aagacgggca taaaatgtca aaatcattag gtaatgtggt tgatccaaac
    11101 catcttatca atacctacgg agctgatacc gctcgcttat ttgtcatgtt tgcatcccct
    11161 cccgagcaat cactggaatg gtcagattct ggagtcgaag gagcacatcg ctttttgaaa
    11221 cgagtttggg ctttttcaca tcagcataga gacatgctca ttgacattaa cgatagtatt
    11281 ttgagtggaa atggtcatgt cgactggaag gaagcggagt ctcgattaaa aaaatcccgt
    11341 catattgtgc atcaaatact tgctcaggca acccatgact atgaccgaaa tcaatttaac
    11401 acggttgttt ctggctgtat gaaattattt aatgaaatat ctgattactc cattgaaact
    11461 gaaaatgata aattttttat acactcaagc atcagtatat tgctgaggct actcgctcca
    11521 attaccccgc atatttgtca ttgcctttgg cagcaattag gttttgataa agcaataatt
    11581 gatgcgccgt ggccaaaggt ggataaaagt gctctaaaaa ctgatgaagt agattatgtt
    11641 gtacaagtta atggaaagct cagagctcaa tttactgcaa gcactgatgc gactgaagag
    11701 gaattaattg ctgcagctaa ggaacatgcc cacaactttg tggtaaacca caccattaaa
    11761 aaagcaatta ttgtcccaca taggcaacta atcaacttgg tcattggata aacatgtgtg
    11821 attcgtccca gcaatctcta aatattttac acaatttctc aagttatggg tggaattacc
    11881 tataaagtgc aaataagaga gggaaaagaa gaatgactca gatccacaag tacttagcat
    11941 ctcttatact gatttggctg ctaactggtt gtggttttca tttgcgtgga gcaattgata
    12001 tccctgagtg gcttgataat gtttctatta tttccaggga tggaaataaa gaactggttt
    12061 ctatactcaa gtcccagctg gaaggctata aaattgatgt caattctgac ccatctctcg
    12121 cgaaatactg gttaattatt aacagttcca gtttacagca gcaaattgtt agtattggtg
    12181 caagtaccaa tccaagacaa tatcaattaa tcttaaccat tgaatttatg ttgcagactc
    12241 ccaaagggca aattattaaa acccccagaa aagttaatgt gagccgtcaa ctcaccgtga
    12301 ataatgacag gatattaggg tcaaatgaag aacaagctct tttagtcagc gaaatgaggc
    12361 gtgatgccgc tattcaaatc attaatcgtt taaaccgacc atgatatgca aataaatcaa
    12421 caagctctta ctcagctttt acaaaaaaaa atacatcatc ttaatgtact aattggacaa
    12481 gatcattatc ttattgacga agcactcaat aacataaaat caatgcttaa aaaatcatct
    12541 gaatgtgatg agaaaatcct ctctattcag tcccctgaag aatggcatgt cgttctggaa
    12601 gaaacaaata attactctct tttttatcaa acagttattt taaccatttt ctttgataaa
    12661 aaaacgatag atacaacggg aaaaaaaatt cttagtgaat atctcaaatc agccaactct
    12721 catagttata ttattatcag agcccctaac cttaccgcca agcaacttca atggttaaca
    12781 catgatgaac aagcgctgat tatcattgca caaccattaa gctcagaagc aatgaagaga
    12841 tggattaatg agcaattaaa attaaatact atctcttttg atccatatgt tcctgaatta
    12901 atttatcaat atactaaagg aaatatgcta gctaccgctc aggtaattga aaaaattact
    12961 ttgagcaata cacccggcac tctcattact ccttacctgg ccttggaaca tttatcggat
    13021 caatgtgatt tttccctttt tgaactgatt gattcatgcc tacttggtca tagcgacaga
    13081 gcaattcata ttttaagaca agctgccaat aataaaacag aagtcacatt ggtattatgg
    13141 atgcttaccc aagaaataag aacgctatta caattattat ttctaatgca acaaaagatg
    13201 gatatcaaaa tggcatctaa tcaattaaaa atttggactc aaagagttaa tctttatcaa
    13261 tccgctatta aaagattaaa ccctttactt ttacaacaac ttcatcacta ttgccaatct
    13321 attgatgata aaatcaaatc caactcaaac aatcaagtat ggaatgctct ggagaacatt
    13381 tctctttcct tatgtttagg gcaattacta ggtgatgcat gcatagcata gcaatatttg
    13441 gtggaacatt tgacccagtg cataatggtc atatcaagac cagcttggca attcaagcta
    13501 actttggctt tgattcctat tattttttac cttgtaaaag ccccgcaatc aaacctccgt
    13561 cctttgccag cagtgagcaa agagtagaaa tgctaaagtt agcactcaaa ccttaccctg
    13621 attttaaaat agatactcga gaactggatc gagatacccc ttcttatatg gtatacactt
    13681 tgcaaagttt cagacaggaa tacaccgact catcattaac tctaattatt ggatacgatg
    13741 gattattaaa tctaccacaa tggtaccaat gggaaaaaat aatatcctta gccaatttac
    13801 ttgttatcaa tagagaagag ttcttccaac agcctgtgcc aaaatcagtg caaactctac
    13861 ttaaccaata tagaaatgat gataaaaata tactgctaaa tcatcatgct ggtagtatct
    13921 gcttatacaa tgctggacac tatgatatat cctcaacaaa aattagagaa caattaaaac
    13981 aacataaaga tgtaaagaat aatttgcctg atttggtgta cgattacatt aagaagcagg
    14041 aactgtatca ataatatttt ctgttttatc aacagccttg acctgcttta taaattcagg
    14101 caaatggcta tatagcaaag ctacaacagg atcgaatcgt gcataaagtt tggacttttg
    14161 tgaatattcc tgataaggca aagaggtcat tttaacagca accataatca gggcaacgat
    14221 aaaaacgcca cgtaaaaagc caaaacccat tcctaaagtt cgatcagttc cgcttaaacc
    14281 agctcgtttt aagataaagc tgagtattgc attcactacc cccccaacaa aaagggtggc
    14341 aaaaagaata ataataaatc caatagctgt tcgtactgac tgttcctcga tataagaact
    14401 taaccaggga tccaggcttt gtgaataatt aaaacctagc caaatagcta atacccacac
    14461 acataatgca acaagttcct ttacaaaacc acgaaacaat ccggtcaata cggacaaagc
    14521 gataattgca acaattgcta tatcaaccca ttgtagttgc ataactaact aactccagta
    14581 ttcacaacaa aaccatttaa ttgcatggca ctagctaatt gagtttttaa ttttattaca
    14641 tcttttttaa cgggtgaatg gccaacaact actttataaa ctattccatt tctgctatta
    14701 gacttaagat aattcgcctt gtagcccttg ctgcgcaatc gattaactaa agcttgagca
    14761 ttagctattt gtgtaaatga agccagctga acagcataaa tatcttgttt aactgctggt
    14821 tttctcgcag caacaatttg gctaaccttt ttgctagtac taacctttgc cgtaacaact
    14881 ggagatgctt tcaccggtgg ttttgctgca gtcagggtca ttactttctt tgctgtcgca
    14941 ttcgctgctt tatttactgc caatttaatt ggctctgatt taattgagtt ctctctttcc
    15001 gcttcaagtg tggcgacttt agatgttctg atgagattgt cttcttctgt gctgatgggt
    15061 tctgcttttg ccaggttaat tgattttttt tcaactggta ttgggggtat ttctgtctta
    15121 gccactttta tagttttaaa tacctctttt tcatcagtaa tcactacgtc aggaggtaat
    15181 ggttttggtg gtaatttcac attgacacta aagttacttt cagggctttg gcttgatttt
    15241 tttattagtg caggagcaaa aattgccccc aatgaaataa taacggccaa acctatcaag
    15301 cgatgtttaa ctttctcatc cattatcagt ttcattgatt ctccttctgc tccaaaagat
    15361 tatgttgggc agccattaca tgactaaccg taaaaaatga accataaaca ataattaaat
    15421 cgtcatctga tgcttgcttt aatgccattt caaaagctgt aaatgggtca ttataacaaa
    15481 catctagaaa aatttctgct tccctgaata cagaaagcaa ttcctcttga cttgcagcgc
    15541 gcttattatg taattgtgca ggataccatc gattaacaca atcccttaaa ggcataatca
    15601 atccataaag atctttatcc tttaaagcgg agaaaacagc atgaatttgc ccttttacat
    15661 tgattttttt tactgtatca gcaagtaatc gaactgactg cagattatga gatacatcgt
    15721 acaaaatatc agtctttcct ttttgtaatt gcaaccgtcc cgggatataa atgagctcca
    15781 tcgctttctt tagattctta taggatacag gcaaatcatt ttgcatcaaa taacaagcca
    15841 ttacagctgc tgccgcagaa cgaagttgaa tttttggcct ggtcaattgc tcaaatagct
    15901 taccttgaca agtaaccccc caatggtctg cttcttcctg ataaaaatag tctttaccgt
    15961 ataaataaga tgatgctcca agttgtaccg caaactcaac gatacttttt ggtggtgaga
    16021 gatccgcata gataaaaggt ttattttttc gtagtattcc ggctttctca taccctatca
    16081 actcaagtgt gtcaccaaga aaactctgat gatcaaagtc gatagtagta atgatcgcta
    16141 aatcagtatc aacaatgttt gtagcatcca accgtcctcc caagcctact tcaagaatta
    16201 tcagatccag gtcatgctgt ttgaaatacc ataaggcagc aagtgttgcc atttcaaaat
    16261 aggttaaatt ggtagggtaa cgtgcttctt caatcacaga aaaagcctta cataaatctt
    16321 tatcttgaat cggtgttaaa ttaattcgaa tacgttcatt aaacacaaga agatggggtg
    16381 acgtataggt accaactcta aaacctgact ggtgatagat ggtttcaagt gctgtgactg
    16441 tagaaccttt tccgtttgtt cctgcaactg ttattacctt gcaatttggt cgctgcaaat
    16501 ttaatttctg cgctacagtc aaaactctgg tcaaaccaag ctgtatttcc tgggtatttc
    16561 tggtttccaa atgagtcaac cagtgattta aatcccattc actccatggc gcgtgcaaaa
    16621 aaactctccg ctcctttatg agtcaatttg gaaaccaatt cggatatagt tgctcgaaga
    16681 tgtttacgtt caactatcat atcaatatgt ccatgctcca gtaaaaactc acttcgttga
    16741 aagccttctg gcaaagtttg tctaacagtt tgctcaatca ctcttggccc agcaaaacca
    16801 attaaagcat tgggttcagc aataattata tcaccaagac tgccaaaact agctgatact
    16861 ccacccatcg ttggatcggt taacacaaca ataaaaggca acccggtttc agcaaatttt
    16921 gctaaagctg ctgatgtttt agccatttgc attaaagaaa ataatccctc ctgcatgcga
    16981 gcaccgccgc tggcagtaaa acaaatgtat ggtcgctttt ctgttgcagc aacattcact
    17041 gcccttacaa atttttctcc aaccgtcgct cccatggagc cgcccataaa attaaactca
    17101 aaggcactaa caaccactgg ttgctgcatt aaaaaccctt taacaacaat taatgcctct
    17161 ttctctcctg tcgctttttg cgcttgagaa attctatcct tgtatttttt ggagtccctg
    17221 aattttaatc tgtcctgtgg ctccagccca gcagccactt cttcttgccc tgactcatct
    17281 agaaattgag cgattctcaa gcgtgcggaa atgcgatgat gaaaattaca agatgggcaa
    17341 accataaaat tttttgccag ttcagtactg taaagcactt cattacaacc agaacattta
    17401 acccataaac cttccggaac ccccttcttt tgagaggttt ctgtccttat tcttgatggt
    17461 aacagttttt taagccagct cataaattag aacccagata ttatcaaatc ggattattat
    17521 acacagaaaa aaataatctg acatgtctat attggacttg aatttcacat aaaggaataa
    17581 gatattttac caaatcgact tgataaccag aaccaaatca ccctgaaaac cccaattact
    17641 cattaaaaat atccaagtcc atctg
//
LOCUS       DACVWI010000053        17598 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.053, whole genome shotgun sequence.
ACCESSION   DACVWI010000053 DACVWI010000000
VERSION     DACVWI010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 17598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17598
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.053"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            52..1257
                     /locus_tag="JBH85_06545"
     CDS             52..1257
                     /locus_tag="JBH85_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015443932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HAU0945857.1"
                     /translation="MRFNQWMTCITSGLILASNSSFATTSPVHEQLQVPQCLAAKITV
                     PHKILAENKEFKIIDVLSSDVETLTILADKVSCGHFVNVSHKLTGTLAANQQQSAQKL
                     LQKKLVKPFGVSKLHKDVYEIKHEEEVNAALKEIVSDNIWQTLTHMTSYYNRSATKDT
                     GVDTANWLKSKFEQMAVEYGRTDTSTFFVKTGWYKQPSLVTVIGKDIKAPAIVIGAHM
                     DTLDGRMPGAGDDGSGSSSIMEAARVILSSKTTFKRPIYFIWYAAEERGLVGSQHVVQ
                     HFQEQSIPVKAVVQFDMTGYRNDANDPTMWVFTDYTDRDLSNYLAKLIDHYIHVPVDY
                     SRCGYGCSDHASWNEEDIPAAFPCETSFADHNPYIHTSSDKMDLLNLEHMTNFSKLAV
                     AFAIELASE"
     gene            complement(1338..2198)
                     /gene="vipE"
                     /locus_tag="JBH85_06550"
     CDS             complement(1338..2198)
                     /gene="vipE"
                     /locus_tag="JBH85_06550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector VipE"
                     /protein_id="HAU0945858.1"
                     /translation="MPLTQTQRLINTYGASLKNGTISNEELIILLDPNTFTKSEGYVD
                     PNAPVSDSNHSKMDAIKDFVLTIGPTLDSEILHQLTSRMIELSPPGDRNTFMRGSSLE
                     KAFLAFEMAHYPTKAEEHFNSTRVRTEFPGENDIDNLKAVILNPIIAFFQSPPGTDEK
                     LEKLIKLCTDYKEHLKPSLTDDANNLVNKKHAIVTNMLAALTDSTAPNNATKIKNMEQ
                     ILTEENKATLKDRRDSFSGARFLESILHILSLGIYSKLTKGTFKFWKSHGEALSDNIE
                     EVSKQQPGMK"
     gene            complement(2490..4013)
                     /locus_tag="JBH85_06555"
     CDS             complement(2490..4013)
                     /locus_tag="JBH85_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HAU0945859.1"
                     /translation="MRKKPLSTGAEWTFELIQAYDREIARIAKSFNLDTYPNQIEIIT
                     AEQMMDAYSSVGMPIGYHHWSFGKHFVSVEKSYKRGQMGLAYELVINSNPCISYLMEE
                     NTMAMQALVIAHACYGHNSFFKNNYLFKMWTSADAIIDYLVFAKKYISDCEERYGIDA
                     VEPVLDACHALMNYGVDRYKHPTPLSIQEEKIRQQNREIYMQSQVNELWRTIPFSKQI
                     DKNGQKKRFPEEPQENILYFIEKNAPLLEPWQREIVRIVRKLAQYFYPQGQTKVMNEG
                     WACFWHYTILHALYDEGLVTDEFMLEILQSHTNVIMQPAYNSPYYNGINPYTLGYHMM
                     QDIKRICENPTDEDKKWFPYLANTDWLTSLDTAMRNYKDESFIAQYLSPKLIRDLKLF
                     HIVDDDRNSELYINAIHDEWGYQQIREALSRQYNLGYLEPDIQVYSVDLQGDRSLTLR
                     YSQQNRVPLGSSTNEVLKHLHYLWQFPVILQAVDGENKITEEFSCPPLNKNKTAETN"
     gene            complement(4010..5290)
                     /locus_tag="JBH85_06560"
     CDS             complement(4010..5290)
                     /locus_tag="JBH85_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HAU0945860.1"
                     /translation="MELTIMSQLIDRRQNAGKKSTVNRQRFLRRYKSQIKKAVSEAVG
                     KRSITEIDQGEQITIPAKDIYEPQFHRGHGGHIERVLPGNDNFIAGDRIKRPGGGGAG
                     GAGGNASDSGEGEDNFVFELSREEFLELYFEDLELPDLVKKELARISTYKTVRAGVTT
                     SGIPNNINVLRSMKQATGRRVALASPYKKRLKEAEEELERLKQLANPDKIDLLKLERD
                     IEFFKKKIQTVPFIDTIDLRYNHRVRVPSPSTQAVMFCVMDVSGSMDEAKKDIAKRFF
                     ILLYMFLTKNYEKIELVFIRHHTSAKEVNEEEFFYSRETGGTVVSSALELLNTIIEAR
                     YPPQAWNIYVAQASDGDNWNADSPYCQELLQEKIMPLLQYFAYIEIMPRHHQSLWEVY
                     QQVKERYPNFAMENIDNVADIYPVFRELFKRKTV"
     gene            complement(5429..7360)
                     /locus_tag="JBH85_06565"
     CDS             complement(5429..7360)
                     /locus_tag="JBH85_06565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006872621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrkA family serine protein kinase"
                     /protein_id="HAU0945861.1"
                     /translation="MNTQDFLAGYTKRFVDNKEEDMSLDEYLELCKTDPTAYANPAER
                     LLMAIGEPELIDTRHDPVLSRIFSNKIIHHYEVFKDFYGMEEPIEQIVGFLKHAAQGL
                     EETKQVLYLLGPVGGGKSSIAEKLKDLMERIPFYAIKGSPVFESPLSLFNPLEDGELL
                     RERFGIPTRYLRYLMSPWAVKRLQEYNGDISKFRVIKVKPSRLKQIAIAKTEPGDENN
                     QDISSLVGKVDIRKLEEFSQDDPDAYSYSGGLCRANRGLLEFVEMFKAPIKVLHPLLT
                     ATQEGNYNATEGLSAIPFEGIILAHSNESEWQSFRNNKNNEAFIDRINIVKVPYCLRV
                     SEEIKIYQKLIHNSSLANAPCAPGTLDMLAQFSVLTRLKEPQNSSIYSKMRVYNGESL
                     KDTDPKAKSYQEYRDFAGVDEGMSGISTRFAFKILSKVFNFDHTEVAANPVHLMYVLE
                     RQIEQEQFPQELHETYLNFIKEYLATKYVDFIGKEIQTAYLESYSEYGQNIFDRYITY
                     ADFWIQDQDYRDPDTGEIFDRALLNLELEKIEKPAGISNPKDFRNEVVNFVLRARANN
                     RGKNPVWNSYEKLKSVIEKKMFTNTEDLLPVISFNAKASEEDKKKHEEFISRMVEKGY
                     TRKQVRLLCEWYLRVRKSQ"
     gene            7527..10124
                     /gene="pepN"
                     /locus_tag="JBH85_06570"
     CDS             7527..10124
                     /gene="pepN"
                     /locus_tag="JBH85_06570"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HAU0945862.1"
                     /translation="MTMPDTTIYLKNYQPPSFTVETVELNFDLYDDHALVNSTLKLTR
                     QNDGALHLYGEELELIALHLNGRPLEHEKYVLTKDALIIEQCPDEIVLNIVTRIKPQE
                     NTQLSGLYRSNHLFCTQCEAEGFRRITYYLDRPDVLATFTTRITADKKQYPILLSNGN
                     LMDTGETADGRHWVIWEDPFKKPSYLFALVAGNLACVRDSFVTCSGRIVDLRIYVEPG
                     NEDKCSHAMESLKKAMKWDEEVYGREYDLDIYMIVAVSDFNMGAMENKGLNIFNSKYI
                     LARPETATDQDFADVEGVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSRDM
                     NSRDVNRIMDVKVLRSAQFPEDAGSMAHPVRPESYQEINNFYTATVYNKGAEVIRMQH
                     TLLGKERFRRGMDLYFKRHDGYAVTIDDFVAAMEDANGVDLTQFKLWYSQAGTPEVRV
                     LSHFSEGRLEITMQQNCPPTPECHEKKPFHIPVRIALFDLKGEMIPIENELLELKEKE
                     QRFIFSGLNEKPVVSLLREFSAPVKIYDDLDQDDLLFLLRYETDGYAKWDAAQRLVLN
                     CLNENLKLPASEWQVSKTLVAAFQHVLLDDSLDMDLRAELLTPPGFEEVAATMKWVDV
                     SKVESVRDYFRQQLGLGLYTEASDLYKELWEVEDHRMHGQAYGRRKLRNVCLWLMMKA
                     NESDALELCREQFKASRTMTDQIASCSLLVNCSRESQRNEAIEGFYKQWSHNELVLDK
                     WFAMQAACELPGTLDHVKKLTQHPAFCIKNPNKVRALVGAFCMANPRNFHALDGSGYV
                     FLSEVLIKLDKLNPQIAARLATPFTRWRSYDEPRQKLIQNQLEQLTKLDLSRDLREVV
                     DKSLIVEEK"
     gene            10334..11131
                     /gene="aroE"
                     /locus_tag="JBH85_06575"
     CDS             10334..11131
                     /gene="aroE"
                     /locus_tag="JBH85_06575"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HAU0945863.1"
                     /translation="MLRRFAVIGHPIAHSLSPVIHQMFAQQTQIELIYEKILGDDVKF
                     EQQISDFFIQYGNGLNVTLPYKKRAYELAKIRTQRCTLAGAANTLWMEENQLHADNTD
                     GIGLIRDLSRFLELKDKKILILGAGGAARGIIFPLLEAKPLQLIVANRTLEKAEELQR
                     QFPQINVTSFAELTEFFDLIINATSTSLSGQVIVLPEEVLSHKPFCYDLAYNQKTSTA
                     FVQYARNGGCEAVDGLGMLVEQAAEAFFTWNKVMPSTQKILEHLRSF"
     gene            complement(11181..12293)
                     /locus_tag="JBH85_06580"
     CDS             complement(11181..12293)
                     /locus_tag="JBH85_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin"
                     /protein_id="HAU0945864.1"
                     /translation="MMVKKALYLAGGGARGAYQAGVLKAIGHILQTKTLPFDLVSGVS
                     VGSVNAAVLAENANDFPAALEKLEAIWGEIHCQQIYKASNYELSKSVMRNLSTLIIKQ
                     RQSGHLLDTTPLRQFLEESIDFTRIEQNIQEGYLDTFEVLSACYETHQTISFYAHNHS
                     EFEDWNYPRHSSQRAVINAQHILASSALPLFFPPVSLNGFHYGDGSIGLVAPLRGAIR
                     FQVDRILILGTRELPEFTDPETLRNGEIAFAHILGNMMNGLFLDNLDRDIEMVNRMNE
                     IATLLSMWKKRRSPWRPISTLHLRPSRAMASVAQSHYTSMPVLLRFLLNIMGARSHSG
                     DLLSFLLFEKEFTRELLELGYQDTITAATEVSAFFS"
     gene            12431..13813
                     /locus_tag="JBH85_06585"
     CDS             12431..13813
                     /locus_tag="JBH85_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945865.1"
                     /translation="MGITKDERFRKFEIEKTLQLLQSMQRPIEYPLTPIDKTSLLKKA
                     TKRIPLLSKFLKTVDDTGEVVVKIGDRMTSLSHTPGKESLAHGFAFGGVAMAGFDFLR
                     IPVIYLSAYLLGEEVPVNLSNNAKWFYSALLLGLTITALAVPVTAPYIAFASAGLSLG
                     VGTFLLGKTLYERYQLGRERRKLKAEILREEDEMLKIQDKAKHLESLLQSADNEEQIA
                     AILYEISVVQEDYSRQKERLQSLKNDELQLEQQIKKLGTMKVVDRTIAVALSALTIAA
                     LAVTLFFPPVGGGMLAGIAIFGGAYFLARVSMPLIKATAVWLYNKLKSTPSESSESQD
                     IDNKPTLSNEKEEKKEDSLQIDNEFVLPPIDAEASISEDSKEYQPVHESTEDVLVRLS
                     VNIDRLKEKVRMEKKEEIEEESPEELQHFSSLTPSPRTLGSRKLSAKESDDENGESES
                     DIEHPDVPKI"
     gene            13881..15383
                     /locus_tag="JBH85_06590"
     CDS             13881..15383
                     /locus_tag="JBH85_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945866.1"
                     /translation="MLNLFREQPRAFHMIFMLELWERFGFYTVQGILTLYFIRYLGYS
                     DLESYYTFGAYSALVYGMVVIGGYLGDRILGTKRTIVLGLVVLAMGYFSLAVTDKQHV
                     FLALGLICVGNGLFKANPSNLLSKCYDDNDPRLHGGFTLYYMAINLGSMVALFVGPAV
                     SSAYGYSYAYMISAIGLILGIVNYWYQRQHVSHVNTKADLRKITVFHWGIIIAGVLIL
                     TGISAYLLQHVMLAKNLLWGITLLVVSVYIYLMRKQAQASFMRMLVALVLMIEAVIFF
                     TLYQQMPTSLNLFAVNNVIPTFLGITIDPQSFQALNPIWIVLMSPVLAYFYRKLHQHN
                     ILFSIPYKFAFGMTMCAVSFLMLYFARYFYVGNGMVSSWWMIFSYLFQSLGELLVSAL
                     GVAMVAELVPATNAGFVMGMWFLTSAVAGFIGATVASFTALPENIKPGVESLLIYSDV
                     FACIGLVTLLIAVIMWLVSPRLSRYITVPSLEGDKDIETVEYSTTYIPSH"
     gene            15489..16895
                     /gene="lem29"
                     /locus_tag="JBH85_06595"
     CDS             15489..16895
                     /gene="lem29"
                     /locus_tag="JBH85_06595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem29"
                     /protein_id="HAU0945867.1"
                     /translation="MYKICTYNQSFPNHYRVKVLRFCELICLEYKVGLEKKIKLSQRS
                     LELLNDYLNLGGSGPSNLVNGSSSIDFSSLTQLLASNLSKSSKTSKEIKKKREFIEAA
                     LYAELLRDLSTSLNGSDEEIKPAEKEPPVSNKLKFWLLAIAGTLLAACEGFDSITTMM
                     AVLPFPAWVVLCAGILFSALSVVVFYGFDLVQVSQNLEIKLTDTPKLLDLYLSQMEEI
                     KAIRKKIDNYSLASMSADELNELHLILVMLQDRVNSLVKAGKKFDLALNSPKMDVAKT
                     IVSGVSGILFFGGGFFAGQSVATFMLALVMTSVTPTFWPVLLFSVIVGLAAFSLYWYV
                     QRVGVNKLVSEWFGLDEDKIEKLCGKSKMDKELKKLNNLDEKVMTTSDLLSKVANLES
                     KLIDIGKQMKEMSTHQAPEKKLEGATGLKASSNVYSFHFNSSNRDQGSVYGERILDDA
                     VSDYGRGQNHNDSIHSLC"
     gene            complement(16780..17580)
                     /locus_tag="JBH85_06600"
     CDS             complement(16780..17580)
                     /locus_tag="JBH85_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945868.1"
                     /translation="MNRHDVKAIHSYVVDEEKKKISLKLINKLYRFLSKYYHLASQEE
                     FIRFIIQPDLYGELTVLYGENKEIAGFSRNCRQSVDLGKKQVTCYIAYLYLNPEYQIH
                     ASIKSAGLTQAIKYKLANPQEELVYIAFANNPLTYEFIYQLSDLIYPKPLQRVPDQIL
                     TVLNALKKQNGWISTNNHPMVVNSPLVPLRSQLSRINEESSELKEFYMSANPDYLQGN
                     SLLIYMPLHLANISYGLNHYDSDPYHNQKQHHQGSSHRKRSPDPDLRN"
BASE COUNT         5044 a         3193 c         3678 g         5683 t
ORIGIN      
        1 ttcgtttcat caggtagtat caaaaacgat ttaaataact taggagagga tatgcgtttt
       61 aaccaatgga tgacctgtat cacatcagga ttaatactcg ccagtaattc aagttttgca
      121 acgacgtcgc ctgttcatga gcaattgcaa gtcccacaat gccttgctgc aaaaataacc
      181 gtaccccata agattttggc cgagaataaa gaattcaaaa ttattgatgt actttcatct
      241 gatgtagaga ccttgactat tctggctgat aaagtcagtt gcggccattt tgtgaatgtg
      301 agtcataaat taacgggaac cttagcggca aaccaacagc aatctgctca aaagttactg
      361 caaaaaaagc tcgttaagcc ctttggtgta tccaaattac ataaagacgt ttatgaaatc
      421 aagcatgaag aagaagtcaa tgcggcacta aaagaaattg tctctgataa catatggcaa
      481 actctgactc atatgacttc ctattataac cgctctgcaa caaaagatac gggtgttgat
      541 acggccaatt ggttaaaatc caaatttgaa cagatggccg ttgagtatgg acgaactgat
      601 acctcgacct tttttgtaaa aacagggtgg tataaacaac cttccctggt taccgtgatt
      661 ggcaaagaca tcaaagcccc cgctattgtt attggtgctc atatggatac tcttgatggc
      721 cgtatgcctg gggctggtga tgatggaagt ggatcatcga gcattatgga agccgcacgg
      781 gttattttgt cttctaaaac aacatttaag cgccccattt attttatttg gtatgctgct
      841 gaagaaagag gtttggtcgg ttcacaacac gtagtccaac actttcagga acaatcaatt
      901 ccagtgaagg ctgtggtaca atttgacatg accggttatc gaaatgatgc caatgatcca
      961 actatgtggg tatttactga ttacacagat agagatttaa gtaattattt ggccaaatta
     1021 attgatcatt atattcatgt gccagtagat tattcacgat gtggttatgg ttgcagtgat
     1081 catgcttcct ggaatgaaga agatattcct gctgcattcc catgtgaaac cagtttcgct
     1141 gatcacaacc catacatcca tacttcttct gataaaatgg atttattgaa cctggaacat
     1201 atgaccaatt tctccaaact cgcggtagct ttcgctattg aactcgcttc cgagtaactg
     1261 ttttaatgcc tctcataaat tttaaatatt tttgagaggc tattttttaa agttaattta
     1321 ttgatatcga ttgatattta tttcatgcca ggctgctgtt tactaacttc ttcaatgtta
     1381 tcggagagag cctcgccatg gcttttccaa aatttaaaag tgcctttggt cagttttgaa
     1441 taaataccca gactcaatat gtgcaggata ctttctagaa atctagcacc gctaaatgaa
     1501 tctcggcgat cttttaaggt tgctttgttt tcttcagtca gtatttgctc catattttta
     1561 atttttgttg cgttatttgg ggctgtgctg tcagtgaggg cggctagcat gtttgtaaca
     1621 atcgcatgtt ttttatttac taaattatta gcgtcgtcgg ttagagaagg tttcaagtgc
     1681 tctttataat ccgtgcataa tttgataagt ttttctaatt tttcatcggt tccgggaggc
     1741 gattggaaaa atgcaatgat tgggttcaaa ataactgctt taagattgtc tatatcattt
     1801 tcgcctggga attctgttct cactcttgtc gagttgaaat gctcctctgc ttttgttggg
     1861 tagtgagcca tttcaaaagc taagaaagct ttttccaagc tagagcctct cataaatgtg
     1921 tttctatctc cggggggcga taattcgatc attcgagatg ttaattggtg aagtatttca
     1981 gaatctaaag tcgggccgat ggttaataca aaatccttta ttgcatccat tttactatga
     2041 ttggagtctg aaaccggggc attgggatca acataacctt ctgattttgt aaaagtgttt
     2101 ggatccagca aaataatcag ttcttcgtta gagattgttc catttttaag tgaagcgccg
     2161 taggtattaa tcaggcgttg ggtttgagtt aaaggcattg cagtgactcc aatgattggt
     2221 tatggcaaat tatagtacaa aattattaag aaattattag gagagtattt ctattgccac
     2281 aacccgcatt acctcaatga aaggtattgt ctaaggagca gccagataaa attgtttcgt
     2341 tgcttcaaga tcgcatcagg agcagtcatt agatcgggtg gttggcagca tattaagggc
     2401 agtgaattaa ggagaagaaa aagaatagat actggccctt agttataata gaaaactaat
     2461 agctattttg agccagtaat ataagactat caattagttt ccgctgtttt atttttatta
     2521 agaggtgggc aactaaattc ctcggtgatt ttattttccc catcaactgc ctgtaatatg
     2581 actggaaatt gccataaata atgcaagtgc tttaatactt catttgttga gcttccaagt
     2641 ggtactctgt tttgttggga gtaccttaaa gtcaaagaac gatctccttg caaatcaacg
     2701 gagtagactt ggatatcagg ttccagataa cccagattgt attgtctgga taatgcttct
     2761 ctgatttgct gatatcccca ttcgtcgtga atggcattga tgtataattc ggagtttcgg
     2821 tcgtcatcaa caatatggaa cagttttaaa tctcgtataa gttttggtga caggtattga
     2881 gcgataaaac tttcatcttt gtagttgcgc atcgccgtat caaggcttgt gagccaatca
     2941 gtattcgcga gatagggaaa ccactttttg tcttcgtctg ttgggttttc acaaattcgt
     3001 ttgatgtctt gcatcatatg gtagccaagg gtgtatggat taataccatt gtaataaggg
     3061 ctattatagg ctggttgcat gatgacattg gtatgacttt gcagtatttc cagcataaat
     3121 tcatcagtca ctaaaccttc gtcatacaaa gcatgcaaaa tagtataatg ccaaaagcag
     3181 gcccaccctt cattcatcac tttagtttgt ccctgaggat aaaaatattg ggccagtttt
     3241 cttactatac gcactatttc tctctgccaa ggctctaata aaggggcatt tttttctata
     3301 aaatagagaa tattttcctg aggctcttct ggaaagcgtt ttttttgtcc gtttttatcg
     3361 atttgcttac tgaaaggtat cgttctccat agctcattaa cttgtgattg catgtagatt
     3421 tcacggtttt gctgtcgaat tttttcttcc tggatagata agggtgtggg atgtttgtac
     3481 cgatcaaccc cgtaattcat aagggcatgg caagcatcaa gcactggttc taccgcatct
     3541 attccgtagc gttcctcaca atcgctgatg tatttcttgg cgaataccag atagtcaata
     3601 atagcatccg cagaagtcca cattttaaat aagtaattgt tcttaaaaaa agaattgtgg
     3661 ccatagcatg cgtgagcgat aaccaaggct tgcatagcca tggtattttc ttccattaaa
     3721 taagaaatac agggattgga attaattaca agctcatagg ccaggcccat ttgtcctctt
     3781 ttgtagcttt tctcaacact gacaaaatgt tttccaaaag accaatggtg gtaaccgata
     3841 ggcataccca ccgaagaata ggcatccatc atttgttcag cggtaatgat ttcaatttgg
     3901 tttggatatg tatccaaatt aaagcttttg gcgatgcgtg caatttcgcg atcataggcc
     3961 tgtattaact cgaaagtcca ttctgcacca gttgatagag gcttttttct cataccgttt
     4021 tccttttaaa taattcgcga aataccggat aaatatcagc aacattatca atattttcca
     4081 tggcaaaatt aggataacgt tcttttactt gttgatatac ttcccacaaa ctttgatgat
     4141 gacggggcat aatttcaata taggcaaaat attgcaataa aggcataatt ttttcttgca
     4201 gcaactcctg acaataagga gagtcggcat tccaattatc accatctgat gcttgggcaa
     4261 cataaatatt ccaggcttga ggagggtagc gtgcctcgat gatggtgttt aataactcca
     4321 gggcactgga aacaacagtc ccgccagtct cgcgcgaata aaaaaattcc tcttcattaa
     4381 cttctttggc tgaggtgtga tggcggataa aaaccaattc aattttttcg taatttttgg
     4441 taagaaacat atagagtagg atgaaaaagc gttttgctat gtcttttttc gcttcatcca
     4501 tggaacctga tacgtccatt acgcaaaaca tcactgcttg tgtagatggt gaaggcacac
     4561 gcacacggtg attataacgc agatcgattg tatctataaa tggtacagtt tgtatctttt
     4621 ttttgaaaaa ctcaatgtct ctttcaagct tcaataggtc tattttgtct ggattggcca
     4681 attgtttcag ccgttcaagc tcttcttctg cttcctttaa tctcttttta tagggggagg
     4741 ctaaagcgac acggcgtcct gtcgcttgtt tcattgagcg aaggacatta atgttgttag
     4801 gtattccact agtggttacg ccagccctta ctgttttata agtgctaatt cttgctagtt
     4861 ctttttttac caaatcgggt aattccagat cttcaaaata gagttccaaa aactcttctc
     4921 gagataattc aaaaacaaaa ttatcttcgc cttcaccact atcgctggcg ttacctccag
     4981 ctcctccagc acctccaccg ccgggtcttt ttatcctgtc tccggcgatg aagttatcat
     5041 ttccaggtag tacacgttcg atatggccac catggcctct atggaattgg ggctcataaa
     5101 tatctttggc tggtatagtg atttgttcgc cttggtcaat ttcagtaata ctccgttttc
     5161 cgacagcctc agagactgct tttttaattt ggcttttata acggcgtaaa aaacgttggc
     5221 gattaaccgt gctttttttt ccagcatttt gtcgtctatc aattaattgc gacataattg
     5281 ttagctccac accttctgca ggtcagtttt ttgttagcca ggttgtaagc agtatctgaa
     5341 tttaggattc tacttgatct tttcagatag ttacttatta accctgactg tatttcataa
     5401 cctattgagt tatgaatgat cctacctatt attgtgactt ccttactctc aaataccatt
     5461 cacaaagtaa gcgaacttgt tttcgtgtgt agcctttttc taccattcga gagataaact
     5521 cttcgtgttt tttcttatct tcctcagatg ctttggcatt gaaagaaata acgggtaaca
     5581 aatcttccgt attggtaaac atttttttct caatcactga ttttagtttt tcatagctat
     5641 tccatacagg gttttttcct cggttatttg ctcgagcgcg cagtacgaaa ttgactactt
     5701 cattacggaa gtctttagga ttggagatcc ctgccggttt ttcgattttc tccagttcca
     5761 ggtttaataa ggctctgtca aatatctcgc cagtatccgg atcgcgataa tcctgatctt
     5821 gaatccagaa atcagcatag gtaatgtaac ggtcaaatat gttctgccca tactcagaat
     5881 aggattccag gtaagcggtt tgaatttcct tgcctataaa atcgacgtat ttggtcgcca
     5941 aatattcttt aatgaagttc aagtaggttt catgtaactc ttgaggaaat tgttcctgtt
     6001 cgatttggcg ttccagcaca tacattaaat gaaccgggtt ggcggccact tcagtatgat
     6061 caaaattgaa tacttttgaa aggattttga aggcaaaccg cgtggatatt ccgctcatcc
     6121 cttcgtcaac ccctgcaaaa tctctatact cctgatacga ttttgccttg ggatcggtat
     6181 ctttcaaact ctctccatta tacacgcgca ttttggagta aatactggag ttttgtggtt
     6241 cttttaaacg ggttaataca gaaaactggg ctagcatatc cagtgtacca ggtgcgcaag
     6301 gggcatttgc taaagaactg ttatggatta gtttttgata gattttgatt tcttcagaaa
     6361 cacgcaggca ataaggcact ttgactatgt tgattcggtc tataaatgcc tcgttatttt
     6421 tattgtttct aaatgattgc cattctgatt cattggagtg ggctagtata attccttcaa
     6481 aaggaatagc tgaaagccct tctgtggcat tgtaattccc ttcttgcgtt gcggtcagca
     6541 agggatgaag gacctttatc ggtgccttaa acatttcaac gaactccaaa agtccgcggt
     6601 tagctcgaca caagcctcca gagtagctgt aagcatcagg atcatcttgg gaaaattctt
     6661 ccaatttacg gatatcgact ttaccaacca gtgaagaaat gtcttgattg ttttcatcgc
     6721 caggttctgt ttttgcaatg gcaatttgtt tgagtcgaga aggcttgact ttaataaccc
     6781 ggaatttgct gatgtcgcca ttgtattcct gtaatcgctt gactgcccag ggggacatta
     6841 agtagcgtag gtagcgtgtt gggataccaa aacgttctct aagtaattca ccatcttcca
     6901 aggggttaaa taatgacagt ggagattcaa agacaggaga acctttgatt gcataaaaag
     6961 ggattctttc cattaaatct ttcaattttt ctgcaatgga agatttacca ccgccaacag
     7021 gccccaaaag atataaaacc tgttttgttt cctctaaccc ttgcgcagca tgtttcaaaa
     7081 agccaacgat ttgctcaatg ggttcttcca ttccataaaa atctttaaaa acttcataat
     7141 gatggattat tttatttgag aaaattcgtg atagaaccgg atcatgtcgg gtatcgatca
     7201 attcaggctc gcctatcgcc atgagcaaac gttctgctgg gttggcatat gctgtcgggt
     7261 ccgttttgca caactccaga tattcatcca aactcatgtc ttcttctttg ttatcaacaa
     7321 atcgtttggt ataacccgct aaaaaatctt gtgtattcat gcgccatccc cttttactta
     7381 accctgagaa ggatataatg tgattctttt ttttctcttt cctgtataaa agcaaaaatt
     7441 acttctttta attcatagta tagtagacta accacttaat ttaatacata aatcaataaa
     7501 cttattcgtt ttttttatag gaagcaatga ctatgccaga cacgaccatt tatttgaaga
     7561 attatcaacc gccttctttt acagttgaga ctgtggaatt gaattttgat ttgtatgatg
     7621 accatgctct agtgaacagc actcttaagt taacacgtca aaacgatggc gctttgcatt
     7681 tgtatggcga agagctggaa ttaattgctt tgcatttaaa tgggcgacct ttagaacatg
     7741 agaagtatgt gttgacgaaa gatgctctta ttatagagca atgcccggat gaaatagtac
     7801 ttaatattgt gactcgcatt aaacctcaag aaaatacgca attatcagga ctttatcgtt
     7861 ctaaccattt attctgtact caatgcgaag cagaaggttt cagacgaatt acctattatc
     7921 ttgatagacc cgatgttttg gcaactttta ctacacgaat tactgcagat aaaaagcaat
     7981 atccgatttt attgtctaac ggtaatttaa tggataccgg agaaaccgcg gatggacgtc
     8041 attgggtgat ttgggaggat cctttcaaga agccctctta tttattcgct ttggtagcgg
     8101 gcaatttagc ttgcgttaga gatagttttg ttacttgctc cggcaggatt gttgatttac
     8161 ggatttatgt agaaccgggg aatgaggaca agtgctctca tgccatggaa tcattaaaaa
     8221 aagccatgaa atgggatgaa gaggtttatg gccgtgagta cgatttagat atttatatga
     8281 tagttgcggt gagtgatttc aatatgggag caatggaaaa caaagggttg aatatattta
     8341 attccaaata catcctcgct cgccctgaaa ccgccactga tcaagatttc gcggatgttg
     8401 aaggtgtagt aggccatgag tatttccata actggacagg aaatcgtgtg acttgtcgcg
     8461 attggttcca gttaagttta aaagagggat tgactgtatt ccgggatcag gagttttctc
     8521 gggatatgaa ttctcgtgat gttaatcgga ttatggacgt taaggtattg cgcagtgctc
     8581 agtttcccga ggatgccggg agcatggcgc atccagtaag gccggaatcc tatcaggaaa
     8641 ttaataattt ttacacggcg acagtatata acaaaggcgc ggaagtgatt cgcatgcaac
     8701 atactttgtt aggcaaggag aggtttcgac gaggcatgga tctttatttc aaacgccatg
     8761 acggctatgc cgtaaccatt gatgattttg ttgctgccat ggaagatgcc aatggagttg
     8821 acttaacgca attcaaactc tggtatagcc aggcagggac acctgaagtg cgcgttctca
     8881 gccatttttc agaaggacga ttggaaatta ccatgcaaca aaattgtcct cctacgcctg
     8941 agtgccatga gaaaaagcca tttcatatcc cggttcgcat tgcattattt gatttgaaag
     9001 gggaaatgat tcccatagaa aacgagcttc tggagttaaa ggaaaaggag caacgtttta
     9061 ttttttctgg gctaaatgaa aagcctgttg tctcgctatt aagagaattc tcagcccctg
     9121 tgaaaattta tgatgatctg gatcaggatg acttgttatt tttattgcgt tatgaaacgg
     9181 atggatatgc caagtgggat gcggcacaac gcctggttct taactgtctc aatgaaaact
     9241 tgaaattgcc agccagtgaa tggcaagtct ctaaaactct tgttgctgcc tttcagcatg
     9301 ttctgcttga tgactctctt gatatggatc tcagggcaga gttgttgaca cctccaggat
     9361 ttgaagaagt ggcagctacc atgaaatggg ttgatgtcag caaggttgaa tcagtgcgag
     9421 attatttccg tcaacaattg ggattgggct tatacactga ggcgtctgat ctttataaag
     9481 aattatggga agtagaagat catcgcatgc atggccaagc ttatggacgc agaaaattaa
     9541 gaaatgtttg tttatggttg atgatgaaag cgaacgaatc agatgcttta gaattatgcc
     9601 gagaacaatt caaggcttct cgtaccatga cggatcaaat tgccagttgc agcttactag
     9661 tcaattgctc cagggaatct caacgaaatg aagccataga aggattttat aaacaatggt
     9721 ctcataatga attggtactg gataagtggt ttgcgatgca agcggcatgt gagttgccag
     9781 gcacattgga tcatgtcaaa aaactaactc aacatcctgc tttttgtatt aaaaatccga
     9841 ataaagttcg ggcgctggtt ggcgcttttt gtatggctaa ccccagaaac ttccatgcgt
     9901 tggatggcag cggatatgtc tttttaagtg aggtattgat taagctcgac aaactaaatc
     9961 ctcaaatcgc cgcacgcttg gctacgcctt ttacgcgttg gcgaagttat gatgaaccaa
    10021 gacaaaagtt aatacagaac cagttggagc agcttacaaa actcgatttg tcgcgggatt
    10081 tacgcgaggt tgtagataag agtctgattg ttgaggaaaa ataggatgaa ttaaagtgtg
    10141 ctggattttg ctataggcag attcagcacg acttaaacga atttgtgcaa acaaagcttt
    10201 caaaattcat caactaactt ttcagcttga tcaccgggtg cgatttaaga acaacttgga
    10261 ttgatgtgct tgttgcgtga gaacagttta taattaggaa aaccaatgaa acctatagga
    10321 taaaggagtt tttgtgcttc gtcgttttgc agtgataggt catccaattg cacatagttt
    10381 gtctcctgtc attcatcaaa tgtttgccca acaaacccaa attgaattga tttatgaaaa
    10441 aatcttgggt gatgatgtca agtttgaaca acaaatctct gattttttta tccagtatgg
    10501 caacgggctt aatgtcactt taccttataa aaagcgcgct tatgaattag caaaaatacg
    10561 cacgcaaaga tgcaccctgg ctggagcagc aaacacccta tggatggagg aaaatcaatt
    10621 acatgctgat aataccgatg gtattgggtt gatacgtgat ttatcccgat ttcttgagtt
    10681 aaaggataaa aaaattctga ttctgggggc tggcggagct gcaagaggga ttatttttcc
    10741 tttattggaa gcgaaaccgt tacaattaat tgttgctaat cggactttgg aaaaagcaga
    10801 agaattacag cgtcaatttc ctcaaatcaa tgtcacaagt tttgctgaat taacagaatt
    10861 ctttgattta atcatcaatg ccacttctac gagtttgtcc ggtcaggtca ttgtattacc
    10921 tgaagaggtg ttatcccata aaccattttg ttatgatttg gcttataatc aaaaaacaag
    10981 caccgccttt gttcaatatg ctcgtaatgg agggtgcgaa gcagttgatg gattaggtat
    11041 gttagtagag caagctgcgg aagcattctt tacatggaac aaagttatgc cttctaccca
    11101 aaaaatatta gaacacctgc gatcttttta aattggaagc ttgcataaca actagatgca
    11161 ctttggcaac caaactctgg ttaactaaaa aaggcgctca cttctgtcgc tgcagtaatg
    11221 gtgtcctggt atcctaattc cagtaattcc cgagtaaatt ctttttcaaa gagtaaaaag
    11281 ctaagtagat caccggaatg acttctggcc cccataatat ttaataaaaa tcgaagcaat
    11341 actggcatgc tggtgtaatg gctttgggct actgaggcca ttgctcggct tgggcgtaaa
    11401 tgcagggttg agattggtct ccagggagag cgtcgttttt tccacataga taagagtgtc
    11461 gctatttcat tcatacgatt gaccatctca atgtctctat ccagattatc cagaaaaagc
    11521 ccattcatca tattgcctag aatatgagcg aaagcaattt caccattacg caaggtctct
    11581 ggatcagtaa attcgggcaa ttccctggta cctaagatga gaattctatc cacttgaaaa
    11641 cgaatagcac cgcgaagggg ggcgaccaag cctatgcttc catcaccata atggaatcca
    11701 ttgaggctga cagggggaaa gaacaatggt aaggcgcttg atgccagaat atgctgggcg
    11761 ttgatcacgg cacgttgact gctatgacgg ggataattcc aatcttcaaa ttctgaatga
    11821 ttatgagcgt agaaagagat ggtttgatgt gtttcataac aggcgcttaa aacttcgaaa
    11881 gtatcgaggt atccttcttg tatattttgt tcaattcgtg tgaaatcaat gctttcttcc
    11941 agaaattgcc gtaatggtgt tgtatcaagc aaatgccctg attgacgttg tttgataatc
    12001 aaggtgctta aattacgcat tactgatttg cttaattcgt agttactggc tttgtagatt
    12061 tgttgacaat gaatttcacc ccaaatagcc tcgagtttct ccagggcagc aggaaaatca
    12121 ttggcatttt cagcaagtac ggccgcattg acgctgccta cgctgacgcc actcactaag
    12181 tcaaaaggta gggttttggt ttgtaaaata tgaccgatag ctttgagtac gcctgcttga
    12241 taagcgcctc gagcaccacc acctgccaaa tatagagctt ttttaaccat catgttttat
    12301 tttatttatt ataacttgaa atatagttga aatctgggct aattagcaag aaagaattat
    12361 cgatgtcatc ttttcttaat tatgaattga tatacttaaa ttaaatcgat tcttttcttg
    12421 agtcattatc atgggaatta caaaagacga acgatttaga aaatttgaaa tagaaaagac
    12481 tcttcaactc ttacagtcga tgcaacgtcc tattgaatat ccgttgacgc ctatagataa
    12541 aacgtcacta ttaaaaaaag ccacaaaacg cattcctttg ctgtcaaaat ttttaaaaac
    12601 tgttgatgat acgggtgaag tagttgtcaa aattggtgat aggatgacca gtttatccca
    12661 tacacctggt aaagagtctt tggctcatgg ttttgccttt ggtggtgttg ccatggcagg
    12721 ctttgatttt cttaggattc ctgtcattta tttgtcggct tatttgctag gcgaagaagt
    12781 ccctgttaat ttgagtaata atgccaaatg gttttattcc gccctattgt taggattgac
    12841 cataaccgca ttggcagtcc cggtaacagc tccttatata gcttttgctt cagcaggcct
    12901 cagtttaggt gtaggtacgt ttttattagg aaaaactctt tatgaacgct atcaattagg
    12961 tcgggaaaga agaaaattaa aagcggagat cttaagggaa gaggatgaaa tgctgaaaat
    13021 tcaggataag gcaaagcatt tggaatccct tttacaaagc gctgacaatg aagagcaaat
    13081 agcagccatt ttatatgaaa tatcggttgt ccaggaggac tatagcaggc agaaagaacg
    13141 ccttcagagt ttaaaaaatg acgagttgca attagaacaa caaatcaaaa aattgggtac
    13201 aatgaaagtt gtggacagga ctatcgcggt tgctttgtct gcgcttacta tcgccgcttt
    13261 agctgtgact ttatttttcc cgccggttgg aggaggcatg ttggctggga ttgccatttt
    13321 tggcggagcg tatttcttgg ctagagtaag catgccttta attaaagcaa cagctgtctg
    13381 gctgtacaat aaattaaaat cgaccccaag tgagagttct gaatcacagg atatagataa
    13441 taaaccgact ttaagtaatg agaaagaaga aaaaaaagaa gattctttgc aaatcgataa
    13501 cgagtttgtt ctaccaccaa tagatgctga ggcgtcaatt tctgaggatt caaaggagta
    13561 tcaacctgtg catgaatcaa ctgaggatgt actggtgagg ttatcagtaa atatcgacag
    13621 gctcaaggaa aaggtaagaa tggaaaaaaa agaggaaata gaggaagagt ccccagagga
    13681 gcttcagcat ttttcatctc taactccctc cccaagaaca ttgggatcca gaaaactatc
    13741 agcaaaagag agtgatgatg agaatggaga aagcgagtca gatatagaac atcctgatgt
    13801 ccctaaaatt taaatctgca ttgcaaaaaa caagaatttc ctttaagtta aaaaaaatta
    13861 ctatcaagga atgaaaattc atgctgaatt tatttcgtga gcaacctcgt gcatttcaca
    13921 tgatttttat gttggaatta tgggagcgat ttgggttcta tacagttcag ggaattctta
    13981 ctctttattt tattcgctac ctgggttata gcgatttaga gtcttactat acctttggtg
    14041 cttattctgc gctggtatat ggaatggtgg ttattggcgg ctatttggga gacagaattc
    14101 taggaaccaa gcgaaccatc gttctcggtc ttgttgtgct ggccatgggt tacttttctc
    14161 ttgcagttac tgataagcaa catgtatttc ttgcattagg attgatttgt gtaggtaatg
    14221 ggctattcaa agcgaatcca tcgaatttgt tatccaaatg ttatgatgac aatgatccac
    14281 gattacatgg tggttttacc ctttattata tggctattaa tctgggcagt atggttgcat
    14341 tattcgtcgg accagcagta tcaagcgctt atggttactc ttatgcttac atgattagtg
    14401 caataggttt gattttgggt attgtgaatt attggtatca acgacaacat gtgtctcatg
    14461 tcaatacaaa agcggatctt cgtaaaataa cagtctttca ctggggaata ataatagcgg
    14521 gtgttttaat acttactgga atatcagctt atttattaca acatgtcatg cttgccaaaa
    14581 atctgttgtg gggtattact ctcttggtag tgtctgttta tatctattta atgcgcaaac
    14641 aggctcaggc ttcttttatg agaatgttag tcgctttggt tttaatgatt gaagcagtca
    14701 tattttttac tttataccaa cagatgccta cttcattaaa tttgttcgct gtaaataatg
    14761 taatacctac tttcctgggc atcactattg atcctcaaag ctttcaagct ctcaacccaa
    14821 tatggattgt attaatgagt cccgtattag cttatttcta tagaaaattg catcaacata
    14881 atattttatt ttctatacct tataaatttg cattcggcat gaccatgtgt gcagtgagct
    14941 ttttaatgct gtattttgct cgttattttt atgttggaaa tggcatggtt tcttcctggt
    15001 ggatgatttt cagttattta ttccaaagtc ttggcgagtt attagtatca gctcttggtg
    15061 ttgcaatggt tgctgaattg gtgccggcta ctaatgctgg gtttgttatg gggatgtggt
    15121 ttttaacttc cgcagtggca gggttcattg gcgctactgt tgcgtctttt acagcacttc
    15181 cagagaacat caaaccaggg gttgagtctt tattgattta ttccgatgta tttgcctgta
    15241 ttggtcttgt tactctattg attgcagtta ttatgtggtt agtatcacct cggctaagtc
    15301 gctatattac agtcccttcc ttggaagggg ataaggatat agaaacagta gaatactcta
    15361 cgacctatat ccccagtcac taggtttgtt tatttccctt ttcggcaatt gagttggttt
    15421 taatatcacc aattgccgtt ttttattttt gtcctattac atatctctta atgttaattt
    15481 aataaaaaat gtataaaata tgtacttaca atcaatcttt ccctaatcat taccgggtta
    15541 aggttctcag gttctgtgag ttaatttgct tggagtataa agtggggctt gaaaaaaaaa
    15601 ttaagctaag ccagcgttct ctggaattat taaacgatta cttaaatttg ggtgggtctg
    15661 ggccttccaa tttagtgaat gggagttcgt cgattgattt ttcatcctta actcaactac
    15721 ttgccagtaa tctttccaaa tcatccaaaa cttcaaaaga aataaaaaag aaaagagaat
    15781 ttatagaggc agctttgtat gctgagttgt tacgtgactt aagtacttca ttgaatggat
    15841 cggatgagga aatcaagcct gcagaaaaag aacctcctgt ctctaataag ttgaaattct
    15901 ggcttttggc aatagctggg acattgttag ccgcatgcga ggggtttgac agcattacaa
    15961 ccatgatggc tgtattacct tttcctgcct gggttgtcct ttgtgcaggt attttatttt
    16021 ccgctttatc tgtcgttgta ttttatgggt ttgatttagt ccaggtctct caaaacctgg
    16081 aaataaaatt aactgacact cccaagctat tggatttata cttgtcacaa atggaagaaa
    16141 ttaaggcgat tagaaaaaaa attgacaatt attctcttgc ctctatgtca gcggatgagt
    16201 tgaatgagtt gcatttaatc cttgttatgc tgcaagaccg tgtcaactct ttagtgaaag
    16261 caggcaaaaa atttgatttg gcactgaata gccccaaaat ggatgttgct aaaacaattg
    16321 tttctggagt atctggaata ctcttttttg gtggaggttt ttttgccggg caatcagtag
    16381 cgacattcat gctggctctg gttatgactt ctgttacacc tacattttgg ccagttttat
    16441 tatttagtgt gattgtcggc ttggctgcct ttagtttgta ctggtatgtg caacgcgtag
    16501 gagtaaataa actggttagc gaatggtttg gtttggacga ggataaaata gaaaaattat
    16561 gtggaaagtc caagatggac aaagaattga aaaagctaaa caaccttgat gaaaaagtaa
    16621 tgactacttc ggatttgctc tcgaaagtgg ctaatttgga gagtaaacta atagatatcg
    16681 ggaaacaaat gaaggagatg agtacgcacc aggctcctga aaagaaatta gagggtgcta
    16741 ctggattaaa ggcaagttct aatgtgtatt cctttcactt taattcctca aatcgggatc
    16801 aggggagcgt ttacggtgag aggatccttg atgatgctgt ttctgattat ggtaggggtc
    16861 agaatcataa tgattcaatc catagcttat gttagccaaa tgcaaaggca tatagattaa
    16921 cagggagttt ccttgcaaat aatccggatt ggctgacata taaaactctt ttaattcact
    16981 gctctcttca ttaattcttg agagctgact tcttaaagga accagtgggg aattgacaac
    17041 cataggatga ttattggttg aaatccagcc gttttgtttt ttaagggcgt ttagaacggt
    17101 caatatttga tctggaaccc tttgtaatgg tttaggatat attaggtcac tcaattgata
    17161 aataaattcg taagttaacg ggttgttggc aaatgctatg taaaccagtt cctcttgagg
    17221 attggctaac ttgtatttta ttgcctgagt taggccggca cttttaatag atgcgtgaat
    17281 ttggtattca ggatttagat acaaataagc gatataacaa gtcacttgtt tttttcccag
    17341 atcaacagat tgtctgcagt tacggctgaa tccggctatt tctttatttt ctccatagag
    17401 aaccgttaac tcgccataca aatcaggctg tatgatgaaa cgtataaatt cttcttggct
    17461 ggccaggtga taatacttgg agaggaagcg atataattta tttattaatt ttaaggaaat
    17521 ttttttcttt tcttcatcta caacataaga gtggatcgct ttaacatcgt gtctgttcat
    17581 tgctctctcc atgaaaca
//
LOCUS       DACVWI010000054        16798 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.054, whole genome shotgun sequence.
ACCESSION   DACVWI010000054 DACVWI010000000
VERSION     DACVWI010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16798
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.054"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..204
                     /locus_tag="JBH85_06605"
     CDS             <1..204
                     /locus_tag="JBH85_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945869.1"
                     /translation="NSSSSSSSDTSSQLSPPPDSNTNTSTPDLGSQTKYDETSSSSNS
                     GSGQSSGSGSSSDVPTPSQSMPG"
     gene            complement(235..1248)
                     /locus_tag="JBH85_06610"
     CDS             complement(235..1248)
                     /locus_tag="JBH85_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine monophosphate reductase"
                     /protein_id="HAU0945870.1"
                     /translation="MTDQAITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVI
                     SANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEFKKCKGPVFVSVGCTENELQR
                     AEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCG
                     ADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIKTSGDIVKALAF
                     GADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMHEWKTAEGV
                     ATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRKLNYVIVTQAGRIESLPHKL
                     LEG"
     gene            complement(1271..2677)
                     /locus_tag="JBH85_06615"
     CDS             complement(1271..2677)
                     /locus_tag="JBH85_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HAU0945871.1"
                     /translation="MDNTNTGLKLFVLDTNILMHDPTAIYHFDEHDIYLPMVVLEELD
                     SHKTGTSELARNVRQTNRMLVELMSNATHDQIVSGLPIPSYINSSNKKCSGRLFFQTD
                     EFDQVVPSTLPGHKVDNTILATALGLQKKYYGKRQVIIISKDINLRIKAGILGIHAED
                     YYNDQVLDDVNLLHRGLHILDNNFWDSHAKDMGSWQESGKTFYKVSGPLVSQWNPNDC
                     LSTEDDQFQALVKKIDGPNAVVQLIRDYTQPKHSVWGITARNREQNFSLNLLLDPDID
                     FVSLQGSAGTGKTLLTIAAGLTQVMDQNRYSEILMTRVTIPVGEDIGFLPGTEEEKMT
                     PWMGALMDNLEVLHSSQVGGSFGRGATQDLLQNKIKIRSLNFMRGRTFLNRYIIIDEA
                     QNLTSKQIKTLVTRAGPGSKIICLGDIKQIDTPYLTETTSGLTFAVDRFKSWEHSAHM
                     TLTRGERSRLAFYAAEHL"
     gene            complement(2832..4031)
                     /locus_tag="JBH85_06620"
     CDS             complement(2832..4031)
                     /locus_tag="JBH85_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HAU0945872.1"
                     /translation="MFIRNLQLFIVVASCILVLIGTDILLPSLPNIAHALSVSSNEAK
                     MLISIFMIGQFSTVLIWGVIADRLGRRKTLFLGMLIFFIGSIFSLKADSIQLLLACRF
                     LQGTGAVVVPVAGWALVQDLFPKDEGARIMTWIGTLTAVIPLFAPALGGQLDVLYGWR
                     SNLYCIAFYSFILCVIMLFLPRTIPVQKTTTADLKETLSIYIRIIKNKTFISYIALFG
                     LLNCGEWCFLTVAPFYYSHAHIAADTMGILLMITSMGFVCGSLLASRLFNRLGIDKII
                     ALGIQLAVMSSLMLLIGEYFHWSKYQLYNAITIGVYILSSALLWGATTSRALQCFDDC
                     RGSASAIRSLILLCFAAFGTYSGRLVNHNSLFPVGLFLLFMAFIAFIVFNNKELKTER
                     HMEGIPI"
     gene            complement(4157..4621)
                     /locus_tag="JBH85_06625"
     CDS             complement(4157..4621)
                     /locus_tag="JBH85_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HAU0945873.1"
                     /translation="MKIGEMVPDFAFNATNNVQGHLNDYKGQIIVLYFYPKDATPGCT
                     TEGQDFRDAYSQFKDLNTVIFGISRDSLKSHEQFKSKQNFPFELISDSNETLCQMFDV
                     IKMKSMYGKQVRGIERSTFIIDTQGVLTHEWRKVNVKGHVEEVLDTVRSLAG"
     gene            complement(4633..5103)
                     /gene="smpB"
                     /locus_tag="JBH85_06630"
     CDS             complement(4633..5103)
                     /gene="smpB"
                     /locus_tag="JBH85_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HAU0945874.1"
                     /translation="MTTKKQPDSTIALNRKAGFDYFIEDQYEAGLVLEGWEVKSLRAG
                     KINLSDSHVIIKYGEAFLLGAQIQPLPTASTHFIPDPIRTRKLLMNKKELNHLIGSVE
                     RQGYTIVPLSLYWKKNKIKIKIALAKGKKEHDKRDTIKDREWQRDRSRIMKKNT"
     gene            complement(5215..5979)
                     /locus_tag="JBH85_06635"
     CDS             complement(5215..5979)
                     /locus_tag="JBH85_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HAU0945875.1"
                     /translation="MKDIIIASFYKFIPLNDFESLREPILTKMHEIGIKGTIILAHEG
                     VNGGFAGNREQMNVFYDYLRSDSRFADLHFKETYDNKNPFDKAKVKLRKEIVTMGVQK
                     VDPSYNAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFREFPDY
                     VQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYLESIPESESL
                     WEGKCFVFDDRVAVDQKLDRVYPQLPQDYKYEREQK"
     gene            6232..7533
                     /locus_tag="JBH85_06640"
     CDS             6232..7533
                     /locus_tag="JBH85_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAU0945876.1"
                     /translation="MIQNNRICRWLFIVLLSLPLVGFTSIPVKSIVVFGDSLSDNGNT
                     THLLKSLRQEEDPAFLVAPFKIFVINKMIEFANDYYVPQIVLDAGISAVTDFFDHDLA
                     PYLANLVGKVKQVPVLPGKPYWKNRFSNGRVWIEYLAEMLSIQKSDEEVYLNKAFGGS
                     WSATYDYQLTVWNLIRHPLGTIKNLIVGKLIPPSLGLIVQAYLLEHEQLSDETLYFIY
                     SGSNDYINVLFFEDNYNTEVMSTYIDNVLDGLSSAVLKLANAGARRFVIMGIPHVGDT
                     PKFVKTTDRDVLNAAVDLHNERLAKRIDAWKERYPTADFLFVNTEQYLKKAFEDPEKY
                     GFYNVKDACIDVKFPMFNAFIHSPFARNYVLQYTQVLQYRDKQFAPGENNYHMCSEPE
                     DYLFWDEIHPTTRAHNYLAYEVCMALEEHGYEVTCKMPESA"
     gene            7897..9711
                     /gene="glmS"
                     /locus_tag="JBH85_06645"
     CDS             7897..9711
                     /gene="glmS"
                     /locus_tag="JBH85_06645"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HAU0945877.1"
                     /translation="MCGIMGAVSERDISKILLEGLRRLEYRGYDSAGIAVIDSQDRLK
                     RVRIQGKVQNLADAMQETAIAGNTGIAHTRWATHGKPSEQNAHPHLSHGEIALVHNGI
                     IENHEHLRQQLITYGYQFTSETDTEVAAHLIHYHYQQHENLLLAVQKAAGEMQGAFAL
                     GVIHQKRPEELVAIRKGSPLVLGFGIGENFIASDALALRSFAQSVIYMEEGDSACVTT
                     QDIKVYDSNRILVQRAVHPLNSDSEIVNKGPYRHFMLKEIFEQSKVITDTLESRINSI
                     DVLRASFGEKASHIFPVVKNIHIVACGTSYHAGMIAKYWLESLAGLPTQVEIASEYRY
                     RDVVVPDNTLFITVSQSGETADTLAALFKAKQSNYLASLAICNVATSTLVREADCVFL
                     TRAGIEIGVASTKAFTTQLAAFLMLAAALCKDNRAQEVLRQLQELPACCERVLQMNEE
                     VESLASLFVNKVHALFLGRGVQYPVALEGALKLKEISYIHAEAYPAGELKHGPLALVD
                     KDMPVIAVAPNDELLDKLKSNLHEVSARGGQLFVFVDDSQNWKANGARLIKVPSCGAW
                     LAPIVYTIPLQLLAYHVAVAKGTDVDQPRNLAKSVTVE"
     gene            9708..10373
                     /locus_tag="JBH85_06650"
     CDS             9708..10373
                     /locus_tag="JBH85_06650"
                     /EC_number="2.1.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiopurine S-methyltransferase"
                     /protein_id="HAU0945878.1"
                     /translation="MNKGQYFWNELWCEGRISFHKEEVNPDLIAYISSLNIPAKGRVL
                     VPLCGKSVDMLWLVRQGYHVVGIELVEKAILQFVQEHQITVRENTTGQAKQYFTDNLN
                     LWITDIFALNAALIEPVDAIYDRAALVALPKKLRPAYVDICLKWLKPGGSILLKTLQY
                     NQEKVQGPPYSVSPEEIALSYQQCAKIELLKSQKRIREPNDHLFNLGISEVNDYVWRI
                     RKG"
     gene            10497..12866
                     /locus_tag="JBH85_06655"
     CDS             10497..12866
                     /locus_tag="JBH85_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HAU0945879.1"
                     /translation="MAEVMLASAAIIADELKVKVSQVETAIRLLDEGATVPFIARYRK
                     EATGGLDDVQLRFLAERLIYLRELDERRTVILQSIREQEKLTPELEQSILAAETKTRL
                     EDLYLPYRPKRRTKAQIAIEAGLEPLAHALWKDPALDPEEQASQFINSEAGIENTQAA
                     LDGARHILMEHFAEDAELINELREYLWQHGIVKSVGNSTKKDQANKFSDYFDYSEAIK
                     KIPSHRALALFRGRREGILQVSLVLPDQDANYGENKVAAYFNVTDRQRKADGWLIDTV
                     RMTWKIKLFTKLELELLTRLREIADEEAIKVFSKNLRDLLLAAPAGPQVTIGLDPGIR
                     TGVKVVVVDATGKLLDYSVIFPFAPQNEWHQSIADLAKLAAKYQVNLISIGNGTGSRE
                     TERLVADLIKMYPDLKLTKIIVSEAGASVYSASEIAANEFPDLDVSLRGAVSIARRLQ
                     DPLAELVKIEAKSIGVGQYQHDVNQAKLARCLDGVVEDCVNAVGVDINTASAALLSHI
                     SGLNDTLAKNIVQFRDEHGAFTNRNQLKNIHRMGEKAFQQAAGFLRIMNGDNALDASC
                     VHPEAYPLVEKIISDKKVSIKEIIGNRELLQSINAEQYVDENFGLPTIRDVLRELEKP
                     GRDPRPEFRTAQFQEGVEDIKDLEQGMVLEGVVSNVTNFGAFVDIGVHQDGLVHISAM
                     TNRFITDPRSVVKAGDIVKVKVVEVDKERRRIGLSMKLNDEQAPAVLQKANKPQPARK
                     QAEQKQPEFKKKQEHKKKPDKIKKSEPVKKTVFNTAMADALAKLKRGGE"
     gene            12869..13249
                     /locus_tag="JBH85_06660"
     CDS             12869..13249
                     /locus_tag="JBH85_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HAU0945880.1"
                     /translation="MQTPKGELTIQTLAMPLNTNANGDIFGGWIVSQMDLAAGVLAKR
                     ISHGRVATVAINSMTFLKPVHVGDVVSCHVELVKVGNTSMTIRVEVWAYSSIKMEKYQ
                     VTEGIFVFVAIDENGKPRQVPKTQ"
     gene            13246..14886
                     /locus_tag="JBH85_06665"
     CDS             13246..14886
                     /locus_tag="JBH85_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2832 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945881.1"
                     /translation="MTNKTQELQRVIADMAVLIEQDAEPDPQLYAFFFQHPEISLELI
                     HLINNLSEELVHDGPPIYSACVFALDICIAQLQAAAEANNKNATKLLSQLMNHLAEVI
                     DTHKHSLSFWLPVLNAFYEVHVELTDDLKEAYYGLASQDDDAVEVDEQFNHLDSIKDL
                     IHELSDLTLFDIAESFFAQSYAMPPDFFADLIVDLYSIEEGKDIALLVLLHPNIEVRE
                     IALSTIDQLINTITLTPASLSRLQIIKYWYPTHYHGMFDRWIKTQRKKGVTFETEASQ
                     AKITIKATEVDGSGSQGVFIHARKNKKNRLCGLLLKYDLGIKDAWITPEISAAEVTDY
                     YHKAFEDSVTLREVDFSYFQTIVEHFLAITVEKSDIPNLHFLEILEFLGIRLKPDKLD
                     LDCVFEQLSVQIIPFTQEKIAESLKRSKMWLKNKQFTESWYIENPTIDKIVNHNSSFV
                     EGVKVCRLADAIDAVFSEEMELHRDKWQFHFLWIALWVKAKHKKNEKVWQDSFLIAYA
                     IHQGYPLKDIPVMKEICYQTVVNSIETMQERRTHLSQE"
     gene            complement(14941..16788)
                     /locus_tag="JBH85_06670"
     CDS             complement(14941..16788)
                     /locus_tag="JBH85_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HAU0945882.1"
                     /translation="MTKSRKLKRNLLEISKTEAGQYSVSAPEHKGLVLSGGGAKGISY
                     LGMIQALQERGKIKNLTHVSGASAGAMTASILAVGMDIKDIKKLIEGLDITKLLDNSG
                     VGFRARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYEDKLSRA
                     GIVINNVDDIINLTKSVKDLEKLDKALNSIPTELKGAKGEQLENPRLTLGDLGRLREL
                     LPEENKHLIKNLSVVVTNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAK
                     GEYIADGGILDNMPEIEGLDREEVLCVKAEAGTAFEDRVNKAKQSAMEAISWFKARMD
                     SLVEATIGGKWLHATSSVLNREKVYYNIDNMIYINTGEVTTTNTSPTPEQRARAVKNG
                     YDQTMQLLDSHKQTFDHPLMAILYIGHDKLKDALIDEKSEKEIFEASAHAQAILHLQE
                     QIVKEMNDGDYSSVQNYLDQIEDILTVDAKMDDIQKEKAFALCIKQVNFLSEGKLETY
                     LNKVEAEAKAAAEPSWATKILNLLWAPIEWVVSLFKGPAQDFKVEVQPEPVKVSTSEN
                     QETVSNQKDINPAVEYRKIIAEVRREHTDPSPSLQEKERVGLSTTFGGH"
BASE COUNT         4938 a         3165 c         3528 g         5167 t
ORIGIN      
        1 aacagtagca gtagcagcag tagtgatact tcatcacaac tgagcccgcc accagactcg
       61 aatactaata caagtacgcc agatcttggt agccaaacaa agtatgacga aacatccagc
      121 agttctaaca gcgggagtgg tcaatcttct ggctcaggct catcttctga tgtcccaaca
      181 cctagtcagt ctatgcctgg atagatgtga aaacagatta tccgggttgg tgagttatcc
      241 ctccagcaac ttgtgaggca agctttctat gcgtcccgcc tgggtgacaa tcacataatt
      301 caattttctt tgcaattcgc tgatggagtc ggcgccggca taggttagac cagagcgcaa
      361 tccgcctatg atatcagcaa taatcccatc agggttttct ttaaatggca cttcagtcgc
      421 aacaccttct gctgttttcc attcatgcat ttgtccaagg aatgcttcct gggcttctcg
      481 ggatgccatg cctcgatagc gtttgacttt gcttccgtca tctttttgaa agacctctcc
      541 tggcgtgggg gcagagccgg ctaacatgcc gcctatcatc acaaaatcag cgccaaaggc
      601 caatgctttg acgatatcac ccgatgtttt gatgccgcca tcagcaacga tggaacgatc
      661 ggcacgtgag caatcctgaa tacaggtcaa catggggacg ccaaagccgg ttttaattcg
      721 ggtgctgcat actgagcctc ctccaatacc tgctttaata atatcagcgc cacaagacgc
      781 aagataatct gccccggcat aagtggcgac attcccagcc ataatgcagc gacttcccaa
      841 taactgacgt aagcttttta atgttttgcc aacgtatttg gcgtgggcat gcgctacatc
      901 aacacaaaag aaatcggctc ctgcatctcg cagtgcctct gctcgttgta attcattttc
      961 agtacatcca accgatacaa agacaggtcc tttgcatttc ttaaattcct gaatattttc
     1021 ttctatggtc ataaatcggt gtaaagcgcc catggctcct ttgctgtgca taaaattagc
     1081 catattactt tcggtaattg tatccatatt ggcgctgatt accggaagat ttaaagtcag
     1141 tttacctaac ctgtcggtac tggttgtttc aacaactcgc ctggattcat gatggttgta
     1201 cgatggaacg agcagaacat catcaaaagt gatcgcttga tcagtcatta ttaatcctca
     1261 taaacaaata ctataaatgc tcagccgcat aaaaagccag ccttgagcgc tctccccgag
     1321 tcaaagtcat atgagcgctg tgttcccaac ttttaaaccg gtctacggca aaagtcagtc
     1381 cggaagtggt ttcagttaaa tagggggtat caatttgctt aatgtccccc agacaaataa
     1441 ttttactacc tgggcctgct cttgtaacca aggttttaat ttgttttgat gtcagatttt
     1501 gcgcttcatc aattataata tagcggttta aaaaagttct tccccgcata aaatttaacg
     1561 agcgtatttt aattttgttt tgcagtaaat cctgagttgc cccgcgtcca aaactgccgc
     1621 cgacttgcga gctgtgaagc acttcaagat tatccattaa agcgcccatc cacggagtca
     1681 ttttttcctc ctcggtaccc ggcaagaatc ctatatcctc gccaacagga atcgttaccc
     1741 ttgtcattaa tatctcgctg tatcgatttt gatccatgac ctgggttaat cctgcggcta
     1801 tggttaatag tgttttccct gtacctgctg agccttgcaa gctgacaaaa tcaatatcgg
     1861 gatccagtaa caagtttagg gaaaaatttt gttcacggtt tcttgccgtg attccccaga
     1921 ctgaatgttt gggttgagtg tagtcacgaa tgagttgaac tacggcatta ggcccatcaa
     1981 ttttcttgac caaagcttga aactggtcat cttccgtact aaggcaatcg tttggattcc
     2041 attggcttac caaaggaccg cttaccttat aaaaggtttt accactttct tgccaggatc
     2101 ccatatcttt ggcatgacta tcccaaaaat tgttatcgag aatatgtaat cctctgtgaa
     2161 gtaaattgac gtcatccagc acttggtcat tgtagtaatc ttcagcatga atacctaata
     2221 tccctgcttt aatacgcaag ttgatgtctt ttgaaataat gataacttgt cttttgccat
     2281 aatatttttt ttgcagacct aaagcggttg ccagtattgt attgtctact ttatggcccg
     2341 gcagagttga aggaaccact tgatcaaatt catctgtttg aaaaaacaat cgtccactgc
     2401 atttcttgtt gctgctattg atgtaagatg ggataggcag tcctgagaca atttgatcgt
     2461 gagtggcgtt actcattagc tctaccaaca tgcggttcgt ttgccttacg tttctcgcca
     2521 attcggatgt ccctgtttta tgactatcca attcttcaag caccaccatt ggcaaataaa
     2581 tatcatgctc atcaaaatgg tagatagcag taggatcatg catcaaaata ttagtatcga
     2641 gcacgaacag cttaagtccg gtattggtat tatccatagg ttcaccctgt cagctaaagt
     2701 attcttcaat tcaagtggaa tcagtctcct gcgtaggcag ggagtacatt gaaatccctg
     2761 aattctatgt tcattgtgct gagctatggt ggttccgtca agaattatat tattaagtgt
     2821 ctgtttttaa gttaaatggg tatgccttcc atgtgccgtt ctgttttcaa ttctttatta
     2881 ttgaaaacaa tgaatgcaat gaaggccata aaaagtaaaa acaatccaac agggaacagg
     2941 ctattatgat taaccaggcg acctgaataa gtgccaaaag cagcaaagca cagtaatatt
     3001 aaactgcgaa ttgcagaggc tgagcctctg caatcatcga agcattgcag ggctctggat
     3061 gtggttgcgc cccatagcaa ggctgagctt agaatataga cgccgatagt tatggcatta
     3121 tagagttggt acttgctcca gtgaaagtat tctcctatta acaacatcag gctgctcatt
     3181 acagccaact gaattcccaa tgctatgatt ttatcaatcc ccaggcgatt aaataagcgg
     3241 gaggccagta acgatccgca gacaaatccc atggaagtaa tcattaataa tatccccatg
     3301 gtgtcagcag caatatgtgc gtgcgaataa taaaatggag ctacagtcag gaagcaccac
     3361 tcgccacagt ttaataatcc aaatagtgcg atataggaaa taaatgtttt gttttttata
     3421 attcgaatgt aaatgcttag tgtttccttc aggtcagcag ttgtcgtttt ttgcacgggg
     3481 atagttctgg gtaaaaacag cataatgacg cataaaatga aagagtaaaa tgcgatacaa
     3541 taaagatttg aacgccaacc atataacaca tccaattgtc cccctaatgc gggggcaaag
     3601 agtggaatca ctgcagtcag tgtcccaatc caggtcatga tgcgagctcc ttcgtctttg
     3661 gggaagagat cctggactaa agcccaacct gcaacaggga caacgactgc gccagtacct
     3721 tgcaagaatc gacaagccag taacaactga attgaatcgg cttttaaact gaagattgag
     3781 cctataaaga aaataagcat ccccagaaat aatgtttttc ttctgcctag ccggtcggca
     3841 ataacgcccc aaataagaac tgtagaaaat tgccctatca tgaaaatgga aatgagcatt
     3901 ttggcttcat ttgatgagac agacagtgcg tgagcaatgt taggcaggct tggtaacaaa
     3961 atatctgtac caattaaaac cagtatgcaa gaggcgacaa caataaaaag ttgcaggttg
     4021 cggataaaca tattgaactc ttaagaaaag ggcgtatttg atgtatttat ccgcaacaat
     4081 aatagcaaaa attaattaaa tactctataa aaagtatttt tttaaagcat caatccctat
     4141 cagggattat tcttatttat cctgccaaag atcgcaccgt gtctagaact tcctcaacgt
     4201 gcccttttac attcacttta cgccattcgt gtgtcaagac accttgtgta tctataatga
     4261 aagtgctccg ctctattcct ctgacttgtt tgccatacat ggatttcatc ttgatcacat
     4321 caaacatttg gcataatgtt tcattgctat cactgattaa ttcaaaagga aaattctgtt
     4381 tgcttttgaa ttgttcatga gattttaaac tatctctgga aataccaaaa atcaccgtat
     4441 ttaaatcttt aaattgtgag taggcatctc tgaagtcttg accttcagtc gtacagcccg
     4501 gagtggcatc tttagggtaa aaataaagta caatgatctg tcctttgtaa tcattaagat
     4561 gtccttgcac gttgttcgtg gcgttaaaag caaaatcggg gaccatctca cctattttca
     4621 taaaccatct cctcaagtgt tctttttcat tattcttgaa cgatcccttt gccattctct
     4681 gtctttgatc gtgtctcttt tgtcatgctc tttttttcct ttagccagag caatttttat
     4741 tttaatttta ttttttttcc aatacaaaga aagagggact atggtatagc cttgcctttc
     4801 aacacttcct atgagatggt ttaattcttt tttattcatc aatagcttgc gcgtcctgat
     4861 cggatcagga ataaaatgag tggatgcggt gggaagaggc tgtatttggg cgcccaatag
     4921 gaatgcctca ccgtatttga ttatcacgtg tgaatccgac aaattgattt ttccagcacg
     4981 cagacttttt acttcccagc cttccaaaac caggcctgct tcgtattgat cttcaataaa
     5041 gtaatcaaaa ccagcttttc tattcaaggc tatggtggaa tctggttgtt ttttggtagt
     5101 cataattcat ctgatttgtt gaaaaaaaca gtataactga tgtactatcc cattgaactg
     5161 cttttcttaa ttttgttgcc ttgaacggct tatggcaaaa aagtatattc tacgttattt
     5221 ctgctctctt tcgtatttat aatcctgagg taactgtgga taaacacgat ctaatttttg
     5281 atccactgca acgcggtcat caaaaacaaa acatttgcct tcccaaagtg attcgctttc
     5341 aggaatagac tccaggtaat ttagaatgcc atcatgaagt tggtaaacat gctcaaagcc
     5401 cagctctttc atataggctg tcgttttttc gcaacgaatt ccgccagtac aaaacatggc
     5461 tattttcttg tcctttttat caattaaatt gcgctgaacg tagtcgggaa attccctgaa
     5521 attttctatg tcaggattaa ttgcattctt gaaagtaccc agttcgtatt cataatcatt
     5581 gcgggtgtct aataaaataa cattaggatc ttgaatgaac tgatgccatt cctcagggct
     5641 tagataggtc ccagcattat aagaggggtc aactttctgg acgcccatgg tcactatctc
     5701 tttacggagt ttcactttcg ctttatcaaa agggtttttg ttgtcatagg tttctttaaa
     5761 atgcaggtcg gcaaagcgcg aatcagaacg caggtaatca taaaaaacat tcatttgttc
     5821 tctattcccg gcaaatccgc cgttgacgcc ctcatgggcc aggatgatag ttccttttat
     5881 gcctatttca tgcattttag tgagtatggg ctctctcagt gattcaaaat cattgagagg
     5941 aatgaactta taaaatgatg caataataat gtctttcacg ctgtaaccta aagattaaca
     6001 aaaaatcaat tcgcaaaaat tatcatttac gcacaattta atcaatagga atgaattaaa
     6061 tgcatttcct ggacatcggg attttaacgg catattgggt gaaaaatagt tgcgttattg
     6121 catgttagta cttaagtata aagaatcgtt gacaataatt aaattctgat catactctaa
     6181 gggttaagct gctatctttt gtttcgctgg ctttgatata aggagatttt tatgatccaa
     6241 aacaacagga tttgtcgctg gctcttcatt gtattgttgt ctctcccttt ggttggtttt
     6301 acgtctattc cagtgaaatc aatagtggtg tttggagaca gcttgtctga taacggtaat
     6361 actacccatt tacttaaaag cctgcgtcag gaagaggatc ctgcgttttt agtggctcct
     6421 ttcaaaattt ttgttatcaa caaaatgata gagtttgcta acgattatta tgttccacag
     6481 atcgtgcttg atgcaggaat atcagcagtt acagattttt ttgatcatga tttggctccc
     6541 tatcttgcca atttggtggg taaagtaaaa caggtcccgg tgctgcctgg caaaccttat
     6601 tggaaaaatc gcttttctaa tggtcgtgtc tggattgagt atttggcaga aatgttatcg
     6661 atacaaaaaa gtgatgaaga agtctaccta aataaagcat ttggaggtag ctggtctgcc
     6721 acttatgatt atcaattaac agtttggaac ttgatacggc atccattggg aacaatcaag
     6781 aacctgatag taggaaaatt aattcctccg agtcttggtc tgatagtgca agcttatctg
     6841 ctggaacacg agcagttaag tgatgaaacg ctgtatttta tttattcagg aagtaatgat
     6901 tacattaatg ttctgttttt tgaagacaat tacaatactg aagtaatgag cacctatatt
     6961 gacaatgtgt tggatggttt gagttctgca gttctgaaac tggctaatgc gggagcgaga
     7021 cgttttgtta ttatgggaat accacatgtg ggggatactc ccaagtttgt gaaaactact
     7081 gatcgtgacg tgttaaatgc agcggtagac cttcataatg agcgccttgc aaaacggatt
     7141 gacgcatgga aagagcggta tccaacagct gacttcttgt ttgtaaatac agagcaatac
     7201 ctgaaaaaag cgtttgaaga tccggagaaa tatggttttt ataatgtgaa agatgcctgt
     7261 atcgatgtga agttccccat gttcaatgca ttcattcact ctccatttgc tcgtaactac
     7321 gtattgcaat acacacaggt tcttcaatat cgagataagc aatttgctcc aggtgaaaat
     7381 aactatcaca tgtgtagtga accagaagac tatttattct gggatgaaat tcatccaacc
     7441 acgagagcac ataactatct tgcttatgag gtttgtatgg ctttggagga acatggctac
     7501 gaggtaactt gcaaaatgcc agagtccgcc taatacaatt aggtatcatc acttgaacca
     7561 cattaacagt ggttcaggtg atttcatgat gaagttgtct aaattgatcc tcatttaagt
     7621 aaatccagag cggtttttaa gcaattcttg agtctctaaa tgatgacgaa gattaatttg
     7681 ccttagtgat ttgtaaaact ttatgtcata attccccttt tttattgata tacttcattc
     7741 atatgaggga atattattta taaaatttaa ggcaccggtt atttaggaaa ttagctgcat
     7801 tcttatgcgt ttcactcttt atctatatat agtagatgaa ccaagaatga aaaagcttat
     7861 ttctacaaaa acagttgctg aaaagaggag caggttatgt gcgggattat gggagctgtt
     7921 tcagaacggg atattagcaa gattttattg gaaggcttgc gccgattgga atatagaggg
     7981 tacgattctg caggtattgc tgtcatagat agtcaagatc gtttaaagag agtaagaatc
     8041 caggggaaag tgcagaattt ggcggatgct atgcaagaga ccgctatcgc tggaaataca
     8101 ggtatagctc atactcgttg ggcgacgcat ggtaaaccct ccgaacaaaa tgctcatcct
     8161 catttatctc atggagaaat cgcattagtt cacaatggca ttattgaaaa tcatgaacat
     8221 ttgcgtcaac aacttattac ttatggttat caattcacat ctgaaactga tacagaggtt
     8281 gctgcgcatt taattcatta tcattaccag cagcatgaga atttattact tgctgtacaa
     8341 aaagctgctg gagaaatgca aggggctttt gcattaggag tgattcatca gaaaagacca
     8401 gaagaattgg ttgcaattcg taaagggagt cctttggttt tgggatttgg aattggtgag
     8461 aatttcattg catctgatgc cttggcactc agatctttcg cacaatcagt tatttacatg
     8521 gaagagggtg acagtgcttg tgtcacaaca caggatatta aggtctatga ttccaatcga
     8581 atacttgttc aaagagcggt tcatccgttg aacagtgatt ctgagatagt gaataaaggg
     8641 ccatacaggc attttatgct gaaagaaata tttgaacaat cgaaggtaat cacagacacg
     8701 ttagaaagtc gaattaatag cattgatgtg ctaagagcga gttttggtga gaaagcatcc
     8761 catattttcc cggtggtaaa aaatattcac attgtggcat gtggaaccag ttatcatgct
     8821 ggaatgattg ccaaatattg gcttgaatca cttgccggct tacctacaca ggttgaaatt
     8881 gcaagtgaat atcgataccg agatgttgtt gtccccgaca ataccttatt tatcactgta
     8941 tctcagtcag gagaaacagc tgatactctt gctgccctat ttaaggcaaa gcaatcgaat
     9001 tatttggcta gtttagctat atgcaatgtt gcaaccagta ctttagtgag agaggcggat
     9061 tgtgtttttt taactcgggc aggtattgag attggtgtag catctaccaa agcgtttact
     9121 acacagttag cagccttcct gatgttggca gcagcacttt gtaaggacaa tcgtgcgcag
     9181 gaagttttaa gacaattaca agagctgcct gcctgttgtg agcgtgtttt gcagatgaat
     9241 gaagaagtcg aatcattggc ttctttgttt gtaaataaag ttcatgcctt atttttaggt
     9301 cgaggggttc aatatcccgt agctctggaa ggcgcattaa aacttaagga aatatcttat
     9361 atacatgcgg aagcttatcc tgccggtgaa ttaaagcatg gtccattggc tttggttgat
     9421 aaggatatgc ctgtgattgc agtagcccct aatgatgaac ttttagataa attaaaatcc
     9481 aatttacatg aagtgagtgc cagaggtggg cagttatttg tatttgttga tgattcacaa
     9541 aattggaaag cgaatggcgc tcgtttaatc aaagttccat cctgtggtgc ttggcttgcg
     9601 cctattgttt acactattcc tttgcaattg ctggcctatc atgttgctgt agctaaaggg
     9661 actgatgtgg atcaacctag aaaccttgca aaatcggtga ctgtagagtg aacaaaggtc
     9721 aatatttttg gaatgagtta tggtgcgagg gacgtatttc ttttcataaa gaagaagtaa
     9781 atccggattt gatagcctat atctcttcct taaatatacc tgccaaggga agggttctgg
     9841 ttcctttgtg tggaaaaagt gtcgatatgc tttggttagt tcgccaaggg tatcatgtgg
     9901 ttggtatcga actggttgaa aaggctattc ttcagtttgt tcaggagcac caaatcactg
     9961 ttcgggagaa tacgacaggt caggcaaaac aatattttac agataatttg aatttatgga
    10021 ttaccgatat ttttgcttta aacgcggctt taatagaacc agttgatgct atctatgaca
    10081 gagcggcttt ggttgctttg ccaaaaaaat tgcgaccagc gtatgtagat atttgcctca
    10141 agtggcttaa gcctggggga agtattctgt taaagacttt acaatataat caagagaaag
    10201 tgcagggtcc tccgtatagt gtttccccag aagaaatcgc tttatcgtat cagcaatgtg
    10261 ccaaaataga gttgttgaaa tcgcaaaaac gaattcggga gcctaatgat catttattta
    10321 atcttggtat tagtgaagtg aatgattatg tttggcgtat taggaagggg taaaacgtag
    10381 tacagtgtta cgcataagga cattttgtat ggatattagc ttaatttcta tatcgcatta
    10441 tagtatgtga tgagtatata atgagacgat ttttatcatg ttttacgggg atatgaatgg
    10501 cagaagtgat gttggcgtca gccgcaatta ttgcagatga acttaaggtc aaagtatcgc
    10561 aggtagaaac tgctattcgg ctgttagatg aaggagcaac agtacctttt attgcgcgtt
    10621 atcgcaaaga agcaacggga gggcttgacg atgtgcaatt gcggtttctt gcggaaaggc
    10681 taatttattt gcgtgaattg gatgagagac gaacagtcat tttgcaatcc attcgtgaac
    10741 aagaaaaatt aacaccggaa ttggaacaaa gcatattagc tgctgaaact aaaacacgcc
    10801 tggaagactt gtatttaccc tataggccta aacgtcgtac aaaagcacaa attgctattg
    10861 aagcaggatt agagccatta gctcatgctt tatggaaaga tcctgctttg gatcccgaag
    10921 agcaggcttc ccaatttata aatagcgaag cagggattga aaacactcag gccgccctgg
    10981 atggtgcgcg acatatttta atggagcatt ttgctgaaga cgccgagtta attaacgaat
    11041 tacgagagta tttgtggcaa cacggaatag tcaaatcagt aggaaacagt actaaaaagg
    11101 atcaggcgaa taaattttct gattactttg attattcgga agcgattaaa aaaattccat
    11161 ctcatcgggc actggctttg ttccgggggc ggcgtgaagg aattctgcaa gtaagtctgg
    11221 ttttacctga tcaggatgcc aattatggag agaataaggt tgctgcttac tttaatgtca
    11281 ctgacaggca aagaaaagcg gatggctggc ttatagatac ggtcaggatg acttggaaaa
    11341 ttaagttatt taccaagctg gagcttgagt tattaactcg tctgcgcgaa atagcagatg
    11401 aggaagccat taaagtgttt tccaaaaatt tacgtgatct gttgctggct gctcccgcag
    11461 gtcctcaagt gacgataggt cttgacccgg gaattagaac gggtgttaaa gtggttgtcg
    11521 tggatgctac aggtaagttg ttggattact ctgttatttt tccatttgct cctcaaaatg
    11581 aatggcatca atccattgcg gatttggcca agcttgctgc gaaatatcag gttaatttaa
    11641 tcagcatagg aaatggcacc ggttctcggg aaacagagag attggtagct gatttaatta
    11701 aaatgtaccc tgatttgaaa ttaacaaaaa taattgtcag tgaagccggg gcatctgttt
    11761 attccgcatc tgaaattgca gccaatgaat ttcctgattt ggatgtttcc ctaagaggcg
    11821 ctgtatctat tgcacgaaga ttgcaagatc ccttggcaga actggtaaaa attgaagcca
    11881 aatcaatagg tgttggccag tatcaacatg atgtgaacca ggcaaagttg gcgcgttgcc
    11941 tggatggtgt tgtcgaggat tgtgtgaatg ctgttggcgt agacattaat acggcctctg
    12001 cagctttgct atcccatatt tccggattga atgatacttt agctaaaaat attgtgcaat
    12061 ttcgcgatga acatggtgct ttcacaaaca gaaatcaatt aaaaaatatc catcgtatgg
    12121 gagaaaaggc ttttcagcaa gcagccggct ttttgcgcat tatgaatgga gataatgctt
    12181 tagatgcctc ttgtgttcat cctgaagcct atcctttagt ggaaaaaatt atttcagata
    12241 aaaaagttag tattaaggaa ataatcggca atagagaatt attgcagagc attaacgctg
    12301 aacaatatgt ggatgagaat tttggtttgc caacaataag agatgtttta cgtgaattgg
    12361 agaaaccggg ccgagatcca cgaccagaat tcagaaccgc tcaatttcag gaaggtgttg
    12421 aggacattaa agatttggaa caaggaatgg ttctggaagg tgttgtgagt aatgtgacta
    12481 attttggtgc ctttgttgat attggcgttc accaggatgg gttggtacat atttcagcaa
    12541 tgaccaatcg ctttattaca gatcctcgtt ctgttgttaa agccggtgat attgtaaaag
    12601 ttaaagtggt tgaagtggat aaagaacgcc gaaggattgg tttaagtatg aagctgaatg
    12661 atgagcaggc tcctgctgtc ttgcagaaag ctaataaacc acagccggct agaaaacaag
    12721 cggaacaaaa gcagcctgaa tttaagaaga agcaagaaca taagaaaaaa ccagataaga
    12781 taaaaaaatc ggagccagtc aaaaaaaccg tatttaatac agccatggcc gatgctttgg
    12841 ccaaactaaa acgtggtgga gaatagggat gcaaacacct aaaggagagt tgactatcca
    12901 aactttggcc atgcctttaa atactaatgc caatggcgat atatttggcg gatggatagt
    12961 ctcccaaatg gatttggcag caggtgtttt ggcaaagaga atttcccatg ggcgtgtcgc
    13021 taccgttgca attaattcaa tgactttttt aaaacctgtg catgtaggcg atgtagtgag
    13081 ctgccacgtt gaattagtga aagtaggtaa tacctctatg actattcggg ttgaggtatg
    13141 ggcttactca tcgatcaaaa tggaaaaata ccaggttact gaagggatat ttgtttttgt
    13201 tgcgattgat gaaaatggaa agccgaggca ggtacccaaa acacaatgac taataaaact
    13261 caagaattgc agcgagtaat tgctgatatg gctgtattga ttgagcaaga tgcagagcct
    13321 gaccctcaat tgtatgcctt ttttttccaa catccggaaa ttagtcttga attaatacac
    13381 cttattaata atttgagtga agaattagtg catgatgggc ctccaatata ctcagcatgc
    13441 gttttcgctt tagacatttg tattgctcaa ttgcaagcag ctgcagaggc aaataataaa
    13501 aatgccacaa aattattgtc tcaactaatg aatcatttag ctgaggtcat tgatacacat
    13561 aagcatagct taagcttttg gttacccgta ctgaatgcat tttatgaagt gcatgttgag
    13621 ctaactgacg atttaaagga agcatattat ggcttggcaa gccaggatga tgatgcggta
    13681 gaagtggatg agcaatttaa tcatttggac tccataaaag atttgatcca tgaattatct
    13741 gatttaaccc tgtttgacat agcagagagt ttttttgcac aaagctacgc catgccgcct
    13801 gatttttttg cagatttgat tgttgatttg tatagtattg aagaaggtaa agatattgca
    13861 ctactggttt tactccatcc taatatcgag gtacgagaga tagcgctatc tactatcgat
    13921 caattaataa atacaattac tttgacgcca gcatcactgt caagattaca aataatcaaa
    13981 tattggtatc caacccatta ccatggaatg tttgatcgtt ggattaaaac gcaaagaaaa
    14041 aagggagtaa catttgaaac agaggctagt caagcaaaaa taacgattaa agcaactgaa
    14101 gtggatggca gtggttcgca aggagttttt atccacgcaa ggaaaaataa aaaaaacagg
    14161 ttatgcggct tattattaaa gtatgatttg ggcattaaag atgcctggat aactccagag
    14221 atttctgcag cggaagttac agattattat cataaagcgt ttgaagacag cgtgaccttg
    14281 cgtgaagttg atttctctta ttttcaaaca atagtggagc attttttagc cattactgtt
    14341 gaaaaaagtg atatacctaa tttgcatttt ttagaaatac tcgaatttct gggcattcgt
    14401 ttgaaacctg ataagcttga tttggattgc gtatttgaac aattaagtgt tcagattatt
    14461 ccttttactc aagaaaaaat agcagaatct ttaaaacgct cgaaaatgtg gcttaaaaat
    14521 aagcaattta cagaatcatg gtatattgaa aatcccacca ttgataaaat tgtcaatcat
    14581 aacagcagct ttgtggaagg agttaaagtt tgtcgtttgg ctgatgctat agacgcagta
    14641 ttttccgagg aaatggaatt acaccgggat aaatggcagt ttcatttttt atggatagcg
    14701 ttatgggtta aggcaaaaca caaaaaaaat gaaaaggttt ggcaggatag ttttttaata
    14761 gcttatgcta ttcatcaagg atacccattg aaagatattc cagtaatgaa agagatatgt
    14821 tatcaaacag ttgtcaacag catagaaacc atgcaggaaa gaagaacaca cttgagccag
    14881 gaatgaatag aaaaatgttc cggaattatt cttgttaata aactaatatg tagaacagag
    14941 ttaatggccg ccaaatgtgg ttgaaagacc aaccctttct ttttcttgca gggatgggga
    15001 tggatcggta tgctcgcgcc ttacttcagc tatgattttt ctatactcta cggcaggatt
    15061 gatatccttt tgattagaga ctgtttcctg attttcagag gtagaaacct taaccggttc
    15121 aggttgaact tcaactttaa agtcttgggc agggcctttg aacagggaaa caacccattc
    15181 aattggtgcc caaagaagat tcaatatctt tgtggcccag ctaggctcag cggctgcttt
    15241 agcttctgcc tcaactttat tcaagtaagt ttccagtttt ccttcactta aaaaattaac
    15301 ttgtttaatg cagagggcaa aggccttctc tttctggatg tcatccattt tggcatcgac
    15361 tgtcagaatg tcttcaattt gatctaaata attttgcacg ctactgtaat caccatcatt
    15421 catttctttg acgatttgtt cttgaagatg caaaatagct tgtgcatgcg ctgatgcctc
    15481 aaaaatctct ttctctgatt tctcatcaat caatgcatcc ttgagtttat catgtccgat
    15541 ataaagtatt gccattaatg gatgatcaaa tgtttgcttg tgagaatcca gtaattgcat
    15601 tgtctgatcg tagccatttt ttacagcgcg cgctctttgt tcaggtgttg gagaggtgtt
    15661 tgtggttgtg acttcccctg tattaatgta aatcatatta tcaatgttat aatagacttt
    15721 ttcacgattt aacacggatg aagtggcatg aagccatttt ccacctattg tagcctcaac
    15781 caaagaatcc atgcgtgcct taaaccagct tatcgcttcc atagcacttt gcttggcctt
    15841 attaacgcga tcttcaaatg cggtgcctgc ctctgctttg acacaaagca cctcttctct
    15901 gtcaagccct tcaatttccg gcatattgtc cagaattcct ccatcagcga tgtattcacc
    15961 cttggcattt ctgccaggta cgaaaagtac cggatgggcc ccagaccact ggacaacttg
    16021 tgctatagat tgttgaggag ttgtgtcttc actgtagcgt tccagctcat gctttgtttg
    16081 attagttaca actacagaca agtttttaat tagatgttta ttttcctcag gcagcaactc
    16141 tcttaagcgg cccaagtcac caagagttag acgaggattt tcaagttgtt ctcctttggc
    16201 gcctttcaac tcagtaggaa tactattaag tgctttatca agtttttcca aatcttttac
    16261 tgattttgtc aagttgataa tatcgtctac attatttatc acaatccctg ctcttgataa
    16321 cttgtcttca tagagagcta ttttttgttt aagtatgcca taattcatct gttgttctgg
    16381 aggaatgggt tgctgcacgc tttctaaatg ttttttcatt tgcatcatgt aaatgacatc
    16441 cagaatgtta cgaaaacgat ctcctctcgc acgaaaacct actccgctat tatctaatag
    16501 cttggtgatg tccaatccct caatcagttt tttgatgtct ttgatatcca tgccaacggc
    16561 taatatactc gccgtcattg ctccggcaga tgctccgcta acatgggtca gattttttat
    16621 ttttccgcgc tcttgtaagg cttgaatcat acccaaatag gatatgcctt tcgctccgcc
    16681 gccacttagc accaaccctt tgtgctcagg cgcactaaca gaatattgtc ctgcctcagt
    16741 ctttgatatt tccagtaaat tcctttttaa tttacggctt tttgtcataa tttcagca
//
LOCUS       DACVWI010000055        16792 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.055, whole genome shotgun sequence.
ACCESSION   DACVWI010000055 DACVWI010000000
VERSION     DACVWI010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16792
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.055"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(111..1013)
                     /locus_tag="JBH85_06675"
     CDS             complement(111..1013)
                     /locus_tag="JBH85_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylserine/cysteine exporter"
                     /protein_id="HAU0945883.1"
                     /translation="MTSVMPFAHLLLALLVVFVWGINFIFVKLSLEEFSPLLLCAVRF
                     LLASVPAVFFIKPPAVPFKIIASYGLIMFALQFALLFIGLRVGMTPGVASLLMQVQVF
                     FSMFFAIIFLGEQPQVGQIIGALIAFIGIGVVALHFDHNVSLMGFLCILAAAASWGIG
                     NLITKKIHSVNLIAVIVWSSFVACLPMFILSLVFEGPESFVTAYEHMTWKGILSVLYI
                     VYISTWVGYGVWNWLISRYPVGMVVPFTLLVPVVGILSSVLILGEPFYLWKLVAGLLV
                     ISGLCINLLTTRLFVAKTQQPETA"
     gene            1266..2612
                     /gene="sdbB"
                     /locus_tag="JBH85_06680"
     CDS             1266..2612
                     /gene="sdbB"
                     /locus_tag="JBH85_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdbB"
                     /protein_id="HAU0945884.1"
                     /translation="MAKTITKDSFFHSRLQQFVANSLFPAGAGDWYKNKGYGKKGEVD
                     DEAPFRDFVEKQKTDKKSHYYKEFQGLDLSLKKVKTKLVSGESCQLEVMKCQPESNEP
                     KKPGTGKHIVYFPGANTYYQACFRDISTACKETGATVHAFNFPGTGLSSGKVREANDL
                     INAGISVVSSLIKQGVHPDDIILQGDCYGASIALEVKKQLEDQADIKVRAIMNNVFKS
                     FKAAVCDMITQSPWLPNILKSIVKRLLEFTGWHVTPGKKYKHADPYQCHIQHLGDQTL
                     ESSTLSGKVSKYHHEIQTGQTKSQKRAPITDTCPEEYRKDRDELDRKHYVRVKESAKE
                     RLASKFGVDKFGRVNAHFADLCELEMLDGQSVYQGFVNDYIARSNAYIEKHPQKGIKE
                     VQDDLRKLHYLQPADSIEITEDEAQDFNTVVDLITEEQQLRHDRFNDNTIGKSISM"
     gene            complement(2639..3196)
                     /locus_tag="JBH85_06685"
     CDS             complement(2639..3196)
                     /locus_tag="JBH85_06685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HAU0945885.1"
                     /translation="MRILEKNIKKTPWYLKPFFWNQKRKYGQILEPALIWARIPRLFL
                     AVAAMYGVIDRKKSPLSPILRSLITVRVSQINWCAFCVDINSATLIKRAGSEARYKQL
                     AKWRSSSLFSPEEKAALDYAEKVTYSYQRPDDECFNQLKLYYSEQEIIELTALIAFQN
                     MSSKFNSALGVEAQGFCSRQLTGKS"
     gene            3245..3829
                     /gene="rdgB"
                     /locus_tag="JBH85_06690"
     CDS             3245..3829
                     /gene="rdgB"
                     /locus_tag="JBH85_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HAU0945886.1"
                     /translation="MKEIILATSNPGKIKELEQLLAPTICIPQADLGISDAEETGLSF
                     IENAILKARHASSLANKPALADDSGLVVPSLNGEPGIYSARYAGIKANDEDNIQQLLS
                     KMADLSQEQRQAYFFCAIALMRHAKDPTPLIATGVFHGLISVKPSGTNGFGYDPVFYL
                     NEYQCTAAELPAKIKNRISHRAKALNQLRALLPD"
     gene            3831..5546
                     /locus_tag="JBH85_06695"
     CDS             3831..5546
                     /locus_tag="JBH85_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAU0945887.1"
                     /translation="MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHF
                     LGLTYAQLGDMENAILYFLQARKINPNDVGILNNLANAYKKAGQLDEAIKYYQQAIEI
                     KPEYVQAHNNLAATYALLNNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAA
                     KTQFNNVIALNPQHREAQFYLGILHLEDNLLSEAEQAFHKVLEQDHEHVQSLINLGVI
                     ALKREQNQLAVDYFTKALALDNEDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDN
                     LEYLYNSGVAQMALGHLNEATLLFDQILTLQSDHTPSLNNLAAIYLKMDMRETAREYL
                     ERALAINPDDVISRHMLNAITGATSVNTTEKYAQNLFNNYALYYDQHMQGELHYKIPH
                     HIGRLIHQLQLLQTSHSLDLGCGTGLTGIVLREISKHLTGVDIAEKMIARAKEKNIYD
                     LLVCSELIDFLRKDKNDYDLAVAADVLPYFGNLDDIFNSINQHLKQEGYFIFTTEIST
                     TTPWKLESSARFSHQPEYIESLINKYQFHLIKQEKIPGRTQNKQVLEVMLYCIQKSTS
                     CFVSN"
     gene            complement(5864..7252)
                     /locus_tag="JBH85_06700"
     CDS             complement(5864..7252)
                     /locus_tag="JBH85_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HAU0945888.1"
                     /translation="MTYQQKQIPRSVFRAYDIRGIIGKELDENSFYNIGLAIARYLQK
                     LNRRQIFVARDGRLTSHALATALKEGLLDSGIDILDLGAVATPVMYYATHTQGIDSGL
                     MVTGSHNPADYNGIKLVLAGKTLIQDEIDTLYALLGEVKQSAVRGTETAFDVIEGYIQ
                     RIVSDIQLKRPLKVVVDCGNGVAGPIIPRAISKLGCEVIPLYCEVDGRFPNHHPDPSI
                     EANLVDLKAAVANHQADIGLGFDGDADRLGLVTNKGEVIWPDRLMMFYSREILSRNPG
                     ATVVFDVKCSSHLEKEIQAAGGVARMCPTGHSIVKAVMKKEQAILAGEMSGHLFFKDR
                     WYGFDDALYSACRLLEIISFSHLTVSEQFELIPNSVNTPEIKIAITDEEKFDFIQRFS
                     EQADFPEGRILNIDGLRVEFPNGWGLLRASNTTPCLVARFEATDKDHLEQIQYLFKKQ
                     IQRLDSELDLPF"
     gene            complement(7253..7711)
                     /locus_tag="JBH85_06705"
     CDS             complement(7253..7711)
                     /locus_tag="JBH85_06705"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006871983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HAU0945889.1"
                     /translation="MHQVIQLKILDSRIGDTIPLPAYATDGSAGLDLRVCISEPMQVA
                     PQQTVLLPTGIAIYIADPKLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKISCW
                     NRSQEHFTVNPGDRIAQLVFIPVVQASFEVVNEFTESSRGEGGFGSSGRY"
     gene            complement(7738..9126)
                     /gene="coaBC"
                     /locus_tag="JBH85_06710"
     CDS             complement(7738..9126)
                     /gene="coaBC"
                     /locus_tag="JBH85_06710"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HAU0945890.1"
                     /translation="MLPELMKTANNSISERLCTPLVSSFSRKSSCCAVWATIILYSFY
                     IPLLRSLCFDRGYSYQKWRSMQDFINKKILLGVCGGIAAYKSAHLVRELTRLGADVRV
                     VMTHSAQQFINPLLMQALSGNEVRIDLFDTQAERAMGHIELARWADYLLIAPASANCL
                     AKMAQGLADDLLSTLYLVTETPVIVCPAMNRSMWAHPATKANCELLKERGVFFVGPEE
                     GSQACGEHGLGRVSEADQIVNTLRLLDVNQLLHGKRIVITAGPTRESIDPVRYLSNYS
                     SGKMGFAMAEAAAMAGAQVTLISGPCHLQTFSDIEVIRVESAQSMLEEVNRHVQQGDV
                     FIGTAAVSDYRVLNPASEKMKKNENSELTLQLVRNADILSEVAKSGKASFVVGFAAET
                     TDVISYAKEKMKNKKLDMIIANQVGNGMGFESDVNQVTVITKNKQIELPLTHKTRLAG
                     QIIAILAASLQN"
     gene            9011..9694
                     /locus_tag="JBH85_06715"
     CDS             9011..9694
                     /locus_tag="JBH85_06715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JAB domain-containing protein"
                     /protein_id="HAU0945891.1"
                     /translation="MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCL
                     QLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYAQLQAAKEICHRSDFIHLQKEIR
                     LSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
                     VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSI
                     FAENKWVCN"
     gene            9730..9966
                     /locus_tag="JBH85_06720"
     CDS             9730..9966
                     /locus_tag="JBH85_06720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945892.1"
                     /translation="MLQPFITDFIKNSSFQFIFVMGLVSDITVAGTIKHIVVLFGFPY
                     LSSVVLYCLMKRKKATVKARISEQYRPKQKKISR"
     gene            10046..13930
                     /locus_tag="JBH85_06725"
     CDS             10046..13930
                     /locus_tag="JBH85_06725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Dot"
                     /protein_id="HAU0945893.1"
                     /translation="MLIYQGKEIVRFKEKTGGKNKSDVDGFYKDNDGGKFFIKKPGDP
                     RELFTELFAGLLLKEFMKRGLIDESYFPSLICADVIQFEDKSYGLIQPLVSFDELHKV
                     IGTSSGDGKDRNTLKETLFGPGYYAGITKQNKYFGLSMALMFSLLLGAHSVHSGNIVV
                     LNGEEKEKSKQFGRIDWGDAFRYFAHPNNNDNLLYAYENRGWFNYKSLTKDYFLNYKK
                     INGLFPAMAEKARQLQSKLNPELLVKIVTSALKNIPADLIDEKTKIQLAAYMCMDSFK
                     EATFGTEGNCKDFAIAMATLLENRLGKIAVLKDMSPLSNPEELYQSILELKPLTLLMT
                     SSTSFSETINQWADILKTTDMEKFSFDSNPINLLELVKQFNLYVDELAITCEANNVWA
                     KERIDSTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEG
                     PCQLYCKEHKDSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFI
                     AFQLAEADIKESLKAPSFAEPLPNKESEFFYPIDEKALAKMNGYQLATICLEELNSPK
                     PSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISGKKTAGQ
                     IDELQKIVISLQSKIKRQTIEFEELEATLIQIKEKYQLLEKMAEQSEHEKSSAQSIIR
                     SLNLELSQLKLQLQEQEKLQFQLKELKEKIHEQTTLSKRLGEELQTQKKTNTHQEETI
                     QRITKEKSLADSSLESLRKELHELAKKERSLHKTLEEKQLQVQQLEEQLAEKEKENLA
                     LKKADKQSQHEKSLDKSAIESLTSELNQLKLELQKQETLQLQLKSLRKQIQEQTLVVE
                     GLKEELQKQKKSNTHQEETIERITKEKSLADSALESLRKEMYELTRKNEENQLKLTKQ
                     VHSLSEQLEEKQLQIREFEKQLQEKEKRVEQSEKGKASAKRTVASLREQVSNLKLQLQ
                     QLGEVIQEKEKGSSLISQQSKQIIALQEIIEDQKRQLEELKIKIQELVSANQELGKQN
                     QSLSKENLHNKNTVEDLKKKLNELNVQLEQLHQSSNEKEQTIRKLREELIKKDSSLKQ
                     NEEMQLAQKHLQEEIDRLQKEIKQQQLNTNQLESIIAQSKEAEKRYQQALQQKKGIYF
                     ARMERVSPIYLQIQQIEQKAKELEERRETEASTAAKTLATKLRLEIKNYLDNNESDEK
                     SALNSFKINAKRHIENSKETLNQHREEWKYLLANVTLGVFLLGIGYLAAILINKATTG
                     NYTFFSQTNSGKKLDALEKAISSTHSETLVYG"
     gene            complement(14053..14616)
                     /gene="thpR"
                     /locus_tag="JBH85_06730"
     CDS             complement(14053..14616)
                     /gene="thpR"
                     /locus_tag="JBH85_06730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HAU0945894.1"
                     /translation="MNAIRAFFAISLPPAIQENIRSNLEPLRQMAPVHSIRWTKPMHL
                     HITLQFLQRLETKHIQVLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLTVDPQ
                     DRLRDWSRMIGQVMDSLKYPLEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIIPPVPI
                     NKFYLIESRPDKEGSNYFPLAQFDLTR"
     gene            14878..15864
                     /locus_tag="JBH85_06735"
     CDS             14878..15864
                     /locus_tag="JBH85_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HAU0945895.1"
                     /translation="MHAMIMEKPGCELQYQEVNKPNPNENELLIKVSACGICRTDLHV
                     VDGELKNPKTPLIPGHQIVGTVEQVGSAVKKFAIGQRVGVPWLGGSCGICNFCTSGRE
                     NLCDQACFTGYQIDGGFAEFCVANYHFCFPIPDGYPDHQAAPLFCAGLIGYRALLKAG
                     DATHLGLYGFGAAAHILIQVACQKGIKIYAFTSPGDQETQRFAYRLGAVWAGDSTQSP
                     PHLLDAAIIFAPVGALVPQALSHTVKGGTVVCAGIHMSDIPSFPYEILWGERTVCSIA
                     NLTRKDGEEFLSLAPKIPVKTKVQTYPLTEVNRALDDLRHGRYRGAGVIVMK"
     gene            16127..16621
                     /locus_tag="JBH85_06740"
     CDS             16127..16621
                     /locus_tag="JBH85_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HAU0945896.1"
                     /translation="MGSLRKHQPGKTTDLLMSPFLRLQQEVNHAMSDFYNLFDPQRSA
                     NLEQFEHISLTPSLDIVEDKDNFKIEVEMPGMGEEDIKVSFCENRLTIEGEKTTSKKD
                     ENKNYISREISYGRYERTISLPLSADVDKATASFKKGMLWITIPKKTEAKENVKTIKI
                     EKAK"
BASE COUNT         5767 a         3320 c         3040 g         4665 t
ORIGIN      
        1 tgtaataacc aaaatcatta tctgataatc tatattatag gggtgataga aatttaactc
       61 cctgctccac ttattttctt aaaaggatat atagaatcag ctggggataa ctaggctgtc
      121 tcaggttgtt gcgtttttgc aacaaacagg cgagttgtca gtaaattaat acaaagccca
      181 ctaatcacca gcaatccggc aaccagcttc cagagataaa atggttctcc caaaataagg
      241 acagaactca aaatacccac aactggaacc aataaagtga aaggtactac catgccaact
      301 ggataacggc ttatcaacca attccatact ccataaccaa cccaagttga aatataaaca
      361 atataaagca cggaaagaat gcctttccag gtcatatgtt cataggcagt tacaaagctt
      421 tcaggccctt caaaaaccag tgaaagtata aacatgggca aacaggcaac aaaactactc
      481 caaacaatca cagcaatcag attaacagaa tgaatttttt tcgtaatgag gttgccaata
      541 ccccaggaag ccgctgcagc aagaatacat aaaaacccca ttaaagacac attgtggtcg
      601 aagtgtaagg ccactacacc aatgcctata aatgcaatca aagcccctat tatctgcccg
      661 acttggggtt gttctcctaa aaagattatt gcaaaaaaca tactgaaaaa gacttgcact
      721 tgcatgagta aagaagccac tcctggagtc atgcccacac gcaaaccaat aaaaagcaat
      781 gcaaattgca aggcaaacat gattaaccca taactagcaa taattttaaa aggtacagca
      841 ggaggcttga taaaaaacac agccggtaca ctggctaaaa gaaatctgac agcgcaaaga
      901 agcagtggag aaaattcttc aagactaagc ttgacgaaaa taaaattaat tccccaaacg
      961 aaaacaacca ataaagctaa caagagatgg gcaaaaggca tgactgaagt caacttttat
     1021 aaaagtctct ttattttaac ccataaacat aaaatatgct aagaaatctt aataattgag
     1081 caaataaaca acaaataatt tcggcatatt ggcatgaatc ctaaaaaaat catagtatta
     1141 ttgatatttt tggtttttag caaatccgaa tgtactttat taatactctc ttaagttttt
     1201 tctgctaaat ttatgctaaa tttaaaaaat atactgactt tatttagctc acactgggga
     1261 attaaatggc caaaactatt acaaaagaca gtttttttca tagtcgttta caacaatttg
     1321 tagctaattc cctttttcca gcaggggccg gtgattggta taaaaacaaa ggctacggaa
     1381 aaaagggcga agttgatgac gaagctcctt ttagagattt cgttgaaaaa caaaaaaccg
     1441 ataaaaaatc acactattat aaagagtttc aaggcctgga tttaagtctg aagaaagtga
     1501 aaacaaagct ggtttctggt gaatcctgtc agttagaagt catgaaatgc caaccagagt
     1561 caaatgaacc taaaaaacct ggcactggca aacatattgt ctattttccc ggggcaaata
     1621 cttactacca agcctgtttt cgcgatatca gcacggcttg caaagaaact ggagcaacag
     1681 tacatgcttt taatttccca gggacaggtc tcagttcagg gaaggtgaga gaggcaaatg
     1741 acttaatcaa tgccggtatt tctgtggtat cttctttgat taaacaaggc gtgcacccgg
     1801 acgacatcat tttacagggt gattgctacg gagcaagcat tgcattagag gtaaaaaagc
     1861 aattagaaga ccaggcagac atcaaagttc gtgcaatcat gaacaatgtt ttcaagtcat
     1921 ttaaagcagc cgtttgcgat atgattaccc aatctccatg gctacctaat atattaaaaa
     1981 gcattgttaa aagattgtta gaatttaccg gctggcatgt tactccggga aaaaaatata
     2041 aacatgccga tccttaccaa tgtcatattc aacacttggg agatcaaacg ctagaatcgt
     2101 caacattatc aggtaaagtc agcaaatatc atcatgaaat acaaactggg caaaccaaat
     2161 ctcaaaaaag ggctcccatt accgatactt gtccagaaga gtatcgaaag gatcgcgatg
     2221 agctggatag gaaacattat gttcgagtca aagaaagcgc taaagaacgc cttgcttcca
     2281 aatttggagt agataaattt ggaagggtca atgctcactt tgccgatttg tgtgaactgg
     2341 aaatgttgga tgggcaatcg gtgtatcaag gctttgtcaa tgactatatt gccagatcga
     2401 atgcttatat cgaaaaacac cctcaaaaag gtattaaaga agttcaggat gatttacgta
     2461 aattacatta cctgcaacca gctgattcca tagagattac tgaagatgaa gctcaggatt
     2521 ttaatacggt agtggatctt attacggaag aacaacaact aaggcatgat cgattcaacg
     2581 ataatacaat aggtaaaagc atctctatgt aattgaaagt actgactggc aggactattc
     2641 agcttttgcc agtcagttgc ctcgaacaaa atccttgtgc ttcaacgcca agggcactat
     2701 taaatttact ggacatattc tgaaatgcaa tcagtgctgt caattcaatg atttcctgtt
     2761 cagaataata caatttcaat tgattgaagc actcatcatc aggacgttga taagaataag
     2821 ttactttttc agcataatcc aatgccgctt tttcttctgg tgaaaataat gaggaactcc
     2881 tccatttcgc cagttgttta taccgtgctt cacttccagc ccttttaatt aaagttgctg
     2941 aattaatatc aacacaaaac gcacaccagt taatttgaga aaccctgaca gtgatgagag
     3001 agcgtaatat tggggaaagt ggtgattttt ttctgtctat cacgccatac atagcagcaa
     3061 ctgccaaaaa taacctggga attcttgccc aaatcaaagc aggttcgagt atttggccgt
     3121 attttctttt ttgattccag aagaatggtt ttaaatacca gggagtcttc ttgatatttt
     3181 tttccaaaat tctcatgcat aattatcctt tttatgaata ctgaattaat agcatggaat
     3241 aagaatgaaa gaaattattt tggcaaccag taaccctgga aaaataaaag aattagaaca
     3301 attactagcc cccaccatat gcattcccca agccgacttg ggtatatccg atgcggaaga
     3361 aacaggatta agttttatag agaatgccat tctcaaagcc cgtcatgcca gctcattagc
     3421 caataaacca gctttagccg atgactcggg gcttgtagtc ccctctttaa atggagagcc
     3481 gggtatctat tcagcacgct atgctggaat aaaggcaaat gacgaagaca atattcaaca
     3541 attgttaagt aaaatggctg atttatccca agaacaaaga caagcctatt ttttttgcgc
     3601 aatagcgcta atgcgacatg ccaaagatcc aacaccgctc attgccacag gcgtatttca
     3661 tggccttatt agcgtgaaac cttcaggaac aaatggcttt gggtatgacc cggtatttta
     3721 tctcaacgaa tatcaatgca cagccgctga attacctgct aaaattaaaa ataggattag
     3781 ccatcgcgca aaagctttaa accaattacg cgcccttctt ccagattaat atgaacagtg
     3841 aagtagatac tctttttgca caagcctata agcttcaata tgaaggccat ttacctcaag
     3901 ccattagctt atatgagcag atacttgccc aatcacccaa acatacagaa actctgcatt
     3961 tcctgggatt aacctatgcc caattaggtg atatggaaaa tgccatttta tattttttgc
     4021 aagccagaaa aattaatccc aatgacgttg gtatactcaa taatctcgct aacgcttata
     4081 aaaaggcagg tcaattagat gaggcaatta aatactacca gcaagccatt gagattaaac
     4141 cagagtatgt ccaggctcat aataatctgg cagcaaccta cgcattactc aacaattacc
     4201 agaaagcgtt gcatcattat gtgattgcag tgaatacaga acctgacttt agcgcggctc
     4261 actttaattt aggtttatta cttctcaaaa atcaacaatt gtctgctgcc aaaacacaat
     4321 ttaataatgt gatagctcta aatcctcagc acagagaagc tcaattttac ttaggtattt
     4381 tgcatttgga agacaattta ctctcagagg cagaacaggc atttcataaa gtgttagagc
     4441 aagatcatga acatgtccaa tccctaatta acttaggcgt gatcgctttg aaaagagaac
     4501 aaaaccaatt agctgttgat tattttacca aagccttggc tttggataat gaagacattg
     4561 atgcacgtaa taatttggca gccacattca tgcatcatga tcgatttgaa aatgcgctca
     4621 tgcattacga tgttttactg aaaaaagaac ccgacaatct ggagtattta tacaattccg
     4681 gagtcgctca aatggcattg ggccatctca atgaagccac ccttttgttt gatcagattt
     4741 taacattaca aagtgatcac accccatcct tgaataatct ggccgctatt tatttaaaaa
     4801 tggacatgcg agaaaccgcg cgcgaatatc ttgagcgcgc tctggcaatc aaccccgatg
     4861 atgtgatcag caggcatatg ctgaatgcca ttacaggggc aacgagcgtt aatactacag
     4921 aaaaatatgc ccaaaattta tttaataatt atgccttgta ttacgaccaa cacatgcaag
     4981 gtgaattaca ctataagatt ccgcatcaca ttggccgcct catccaccaa cttcaacttt
     5041 tgcaaaccag tcattctttg gacttgggtt gtggtactgg attaacaggt attgtgcttc
     5101 gtgaaataag caaacactta accggagtag atatagcaga aaaaatgata gctcgagcaa
     5161 aggaaaaaaa tatctatgat cttctggtat gctcggaatt aatcgatttt ttaagaaaag
     5221 ataaaaacga ttacgattta gcggtcgctg cagacgtcct accctatttt ggtaatctgg
     5281 atgatatttt taattccatc aatcaacatc tgaagcaaga agggtatttt attttcacta
     5341 ccgaaatcag cacaacaact ccgtggaaac tggaaagcag cgctcgattt agccatcaac
     5401 ccgaatacat agagagctta atcaataaat accaatttca tcttatcaaa caagagaaaa
     5461 taccaggccg aacacaaaac aaacaagtgc tggaagtcat gttgtattgc atacagaaat
     5521 caacctcttg ttttgtttcc aactgaactt acgcccccct aatcactttg ttaaaaaaaa
     5581 ccgttcacag gatatgtaat tagggaatac caagtgttct gtctttcccg cgaaggcgaa
     5641 tctatcaata aaattagcat atagttttta tttttagacg gtttcccgcc ttcgcgggaa
     5701 ggaccactca aataaatagg attataaaca gaaaagactg cattcccaat gaacggttgt
     5761 attaaaaaat aaacttttat ctaggctttt tcgtgagttc tgtccaaatc tggcaaactc
     5821 tgaaaaggat aactctatat tggatttttc atattcttaa acactaaaat ggcaaatcca
     5881 actcagaatc caagcgctga atttgtttct taaacaaata ttgaatttgc tccagatgat
     5941 ctttatctgt cgcctcaaaa cgtgcgacca gacaaggagt tgtgtttgat gctcgtaaca
     6001 atccccatcc atttggaaat tcaacacgca aaccatcaat attcaaaatc ctaccttcag
     6061 ggaaatcagc ctgctcacta aaacgctgaa taaaatcaaa tttttcttca tcagtaatcg
     6121 ctatttttat ttcaggtgta ttgacactat tagggatcaa ctcaaattgt tcactgacag
     6181 tcaaatggga aaaactgata atctctaaca atcggcatgc gctatataaa gcatcgtcaa
     6241 atccatacca gcgatcttta aaaaacagat gcccgctcat ttcgccagcc aagatggctt
     6301 gttctttttt catcaccgct ttcacaattg aatggccagt ggggcacatt ctggcaacac
     6361 cgcctgctgc ctggatttct ttctccaaat gactggagca cttcacatca aacacaacag
     6421 tagcacctgg attacgactt aaaatctctc gtgagtaaaa catcattaaa cgatcaggcc
     6481 aaatcacttc gcctttattt gtcactaggc caagtctgtc agcatcccca tcaaagccca
     6541 aaccaatatc agcttgatga tttgccacag ccgcttttaa atcaactaaa ttagcttcta
     6601 ttgaagggtc aggatgatga ttgggaaatc gaccatccac ttcacaatac aggggaatga
     6661 cttcacagcc taattttgaa atagccctgg gaataattgg acccgccaca ccatttccac
     6721 aatcaacaac tacttttaaa gggcgcttca attgaatatc gctcacgata cgctgaatgt
     6781 agccttctat cacatcaaaa gccgtttctg tgccacgaac agctgactgt ttgacttcac
     6841 ccagcaaagc ataaagtgta tctatttcat cttgaattaa tgtttttcca gccaatacta
     6901 acttgatacc attataatca gcaggattat gacttccggt aaccatcaat ccagaatcaa
     6961 tcccttgcgt atgggtagca taatacatga caggtgtcgc cacagcacca agatcaagga
     7021 tatctatccc actgtctagc aaaccctctt tcaaggccgt agccaatgca tgactggtca
     7081 gacgtccatc acgagctaca aatatttgtc gacgatttaa tttttgtaaa taacgtgcaa
     7141 tagctaaacc aatgttataa aaagaattct catccagttc tttaccgata atccccctaa
     7201 tgtcataggc acgaaagaca gagcggggaa tttgtttttg ttgataggtc atttaatatc
     7261 tcccggaact accaaaacca ccttctcctc tggagctttc tgtaaattca ttgaccacct
     7321 caaaagaagc ctgtacaacc gggataaaaa ctaattgagc aattctatca ccaggattaa
     7381 cagtaaaatg ttcctggctc ctgttccaac aagagatttt taattctcct tgataatcgg
     7441 agtcaatcag ccctacaagg tttcctaaaa caataccatt tttgtggcct aaacctgatc
     7501 ttggcaaaat cactgccgcc agctttggat cggcaatgta aatagcaatg ccggtgggca
     7561 gcaatactgt ttgctgaggt gctacttgca taggctccga gatacagacc cttaaatcca
     7621 gaccagcgga cccatcagtg gcataggcag gcaatggaat ggtatctcct atccttgaat
     7681 ccagaatttt taactgaata acttgatgca taataattct caatcgtttt attgcgccta
     7741 attttgcaga cttgcagcaa ggattgcaat aatttggcct gccaggcgtg ttttatgggt
     7801 taatggcagc tctatttgtt tgttttttgt aatcactgtt acttgattta catcactttc
     7861 gaatcccatt ccattaccta cctgattggc gataatcata tccagttttt tatttttcat
     7921 tttttctttt gcataggaaa tcacatcagt tgtttcagct gcaaacccaa caacaaagga
     7981 agctttacca cttttagcta cttcagaaag aatatctgca tttctaacaa gctggagagt
     8041 gagttcagag ttttcatttt ttttcatttt ttccgaagca ggattcagca ctctataatc
     8101 tgatactgcg gctgttccaa taaatacatc tccctgttgt acatgtctgt tcacttcttc
     8161 cagcatcgat tgtgcagact ccactcttat gacctcgatg tccgaaaacg tttgtaaatg
     8221 acaaggacca ctaattaatg tcacttgtgc gcctgccata gcggcggctt cagccattgc
     8281 aaaacccatc ttccctgaac tgtaattgct taaataacga actggatcaa tcgactcgcg
     8341 agtagggcct gcagtaatca caattcgttt gccatgcaat agttgattca catccagtaa
     8401 gcgcaaggta ttcacaattt gatccgcctc gctgactctt cccaatccat gttccccaca
     8461 ggcctgggag ccttcttcag gcccgacaaa aaacacacct cgttctttta acaattcaca
     8521 atttgccttg gttgctggat gtgcccacat gcttctgttc atggcaggac aaacaataac
     8581 tggcgtttca gtaacgagat ataatgttga aagcaaatca tcagcaagac cttgagccat
     8641 tttagcaaga caatttgcag acgcaggagc aatgagcaaa taatctgccc atctggctaa
     8701 ttcaatatgt cccatagccc gttcagcttg agtgtcgaat aaatcaatcc tcacttcatt
     8761 gcctgataat gcctgcatca ataaagggtt aatgaactgt tgtgctgaat gagtcatgac
     8821 aaccctcaca tcggccccca aacgagttaa ctctctaacc agatgagcag atttataagc
     8881 agcaatgccg ccacaaacac caagtagaat ttttttatta ataaaatctt gcatggatcg
     8941 ccatttttga taagaataac cccgatcaaa gcacaaactt cgcaataaag gaatataaaa
     9001 ggaatacaaa atgatggttg cccatacagc gcagcaactt gacttgcgcg aaaaactact
     9061 tactaatgga gtacatagcc tctctgatat tgaattgtta gccgttttca tcagttcggg
     9121 taacaataaa aaatcttgtt tgcaactagc ctatgagctc accaaacact tgggaaattt
     9181 acgtaatatc ctcaatgctg atctgcaaag ctttaaatca atccatggat taggagaggt
     9241 tcgttatgca caacttcagg ctgcgaaaga aatatgtcat cgaagtgatt ttattcatct
     9301 gcaaaaagaa atccggttat ctaacacaca acaaacttat gcttttttaa aaaaacgact
     9361 gcgagactac aaaaatgaaa cttttgccgc actctttctg gataaccaac accgaattat
     9421 tgcttatgaa gaattattct caggaaccat caacacggca acagtctatc ccagaccgat
     9481 tgtagaacgt gtattgcaat taaatgctgc tgctttaatt ctggcacata atcatccctc
     9541 gggcttgtct gatgcaagcc agcaagattt agccattaca gaacgcattc gagatgctct
     9601 ggatttggta gatgcccggt tactggatca cattgtcatt ggggataatg aagtgtattc
     9661 catttttgct gagaacaaat gggtatgtaa ctagttcccg tccctatcat ttgagttaat
     9721 ggattaaaaa tgctccaacc ttttattaca gattttataa aaaatagttc gtttcaattt
     9781 atttttgtaa tgggattagt ttctgacatc accgtagccg ggacgataaa acacatagta
     9841 gttctctttg gattccccta tttaagctct gttgttcttt attgtctaat gaagcgtaaa
     9901 aaagcaaccg ttaaagcaag aatcagtgag caataccggc caaaacagaa aaaaattagt
     9961 agatgaattc ttaaggtttt cttaaggttt agttaatact tggtggttat aatggcacaa
    10021 agtgttgttt taggtcagag tcattatgtt aatttatcaa ggtaaagaaa tagttcgatt
    10081 taaagaaaaa acggggggta aaaataaaag cgacgtcgat ggtttttata aagacaatga
    10141 tggcgggaaa ttttttataa aaaaaccagg tgaccctcgt gaactattca cggaattatt
    10201 tgccggtttg ttattaaaag aattcatgaa gcgagggttg attgatgaaa gttattttcc
    10261 atcattgatt tgcgcggatg tcattcaatt tgaagacaag tcctatgggc tcatccaacc
    10321 actggtttca tttgatgaat tacataaagt gattggaacg agctctggtg atggcaaaga
    10381 tcgtaataca ctaaaggaaa ccctttttgg gccaggttat tatgctggta ttacgaaaca
    10441 aaataaatac tttggccttt ctatggccct tatgttttct ttattgttgg gagcccatag
    10501 tgtacatagt ggcaacatcg ttgtactcaa cggagaggaa aaagaaaaaa gcaaacaatt
    10561 tggccgaata gattggggag acgcattccg ttatttcgct catcctaaca ataatgacaa
    10621 tctcctttat gcttatgaaa acagaggttg gtttaattat aaatcactaa ctaaagatta
    10681 tttcctcaac tataagaaga tcaacgggct cttccctgcg atggctgaaa aagctcgaca
    10741 attgcaatcc aaactcaatc ctgaattact tgttaaaata gtaaccagcg cactcaaaaa
    10801 tattccagct gatctgatag atgaaaaaac caaaatccaa cttgccgcat acatgtgtat
    10861 ggattcattt aaagaggcga catttggcac tgagggtaat tgcaaagatt ttgccattgc
    10921 catggccaca ttattagaaa atcgtttagg aaaaattgct gttcttaaag atatgtcccc
    10981 attgagcaat cctgaagagc tatatcaaag tattttggaa ttaaaaccct tgacgcttct
    11041 tatgacctct tcaacctctt tttcagaaac cataaatcaa tgggcagaca tcttaaaaac
    11101 tacagacatg gaaaaatttt cgtttgatag taatccaatc aacctactgg aattagtcaa
    11161 acaatttaat ctttacgttg atgaactagc catcacgtgt gaagccaata atgtctgggc
    11221 aaaagaaaga atagacagca cccctaatct gtttgctctc tacgataata gcggtggtga
    11281 agcgattcac ggacatgcct ttgttcctta ctacaaagaa agcattgtat tgcgccgcct
    11341 atttacagta gaccctaata ctttcaactt atctcgtttt gctgcttttg aaggaccatg
    11401 ccaactctat tgcaaggaac ataaagactc tgcctgggtt aaaatccaaa ccttactgac
    11461 tttaggtaat ggaattatta atacgctaaa aataatcaaa caggctcaag cattcggaat
    11521 agatgaggca gttacagaga atttaaaagc attgaaagaa caattcattg cttttcaact
    11581 tgcggaagct gatataaagg aatcattaaa agcaccttct tttgcagagc ccttgcctaa
    11641 taaggaaagt gagttttttt atcccattga tgaaaaagca ttagctaaaa tgaatggata
    11701 tcaacttgca acgatttgtc tggaagaact aaatagccct aaaccgtcgc ctttaattga
    11761 aagaattctc agtaataaaa aattttggaa acgtattaac tctgcttttg aaagtggtgt
    11821 atttaaaggc cgcacagatg atcccgccgg taaaatagct aaaatccgtg aatggcatca
    11881 attattacag atttctggta aaaaaactgc tggacaaatt gatgagctgc aaaagatagt
    11941 aatttctctt caatcaaaaa ttaaaaggca aacgattgaa tttgaggagt tagaagcgac
    12001 tttaatccaa ataaaagaaa aatatcagtt actggagaaa atggctgagc aaagcgaaca
    12061 tgagaaatct tccgcccaat ccattattcg ctctctgaat ttagaactga gtcagcttaa
    12121 attacaactg caagagcaag aaaaattaca gttccagtta aaagaactca aagagaaaat
    12181 acatgaacaa actactctat ccaagcgatt aggagaagag ctgcaaacgc aaaagaaaac
    12241 caacacgcac caggaagaaa ccattcaaag aatcaccaaa gaaaaatcat tggccgattc
    12301 ttcccttgag tcgcttcgaa aagaactgca tgaattggca aaaaaagaac gctctcttca
    12361 taaaacgctc gaagaaaaac aattacaagt acaacagtta gaagagcaat tagcagagaa
    12421 agaaaaggaa aatctagccc tgaaaaaagc tgacaaacaa agtcaacatg aaaaatccct
    12481 ggataaatcc gctattgaat ctctaacctc agagcttaat cagcttaaac tagaactgca
    12541 aaaacaagaa acattacaat tgcagttaaa atctttaaga aaacaaattc aagagcaaac
    12601 attagttgta gagggcttaa aagaggagtt acaaaaacaa aagaaaagca acacacacca
    12661 ggaagaaact attgaaagaa ttactaaaga aaaatcatta gctgattctg ctcttgaatc
    12721 acttcgaaaa gagatgtatg aattaactcg aaaaaacgaa gaaaatcaac ttaaattaac
    12781 aaaacaagtc cactctctta gcgaacaact tgaagagaaa caattacaaa ttagagaatt
    12841 tgagaagcaa ttacaagaaa aagaaaaacg agttgagcaa agtgagaaag gtaaagcttc
    12901 agcaaaacga actgtggctt cacttagaga gcaagtaagc aatttaaaat tgcaattaca
    12961 gcaacttgga gaggtaattc aggaaaaaga aaaaggctcc tctttgataa gccagcaatc
    13021 caaacaaatt attgctcttc aagagattat agaagatcaa aaaagacaat tggaagaatt
    13081 gaaaataaaa attcaggaac ttgtatctgc aaatcaagag cttggaaaac aaaatcaaag
    13141 tttgagcaag gaaaatttac ataataagaa tacagttgaa gatcttaaga aaaaattgaa
    13201 tgaattaaat gttcaattgg aacaattgca tcaatcttca aatgaaaaag aacaaaccat
    13261 tagaaaattg agagaagaac tcattaagaa agattcttcg ctcaaacaaa atgaggaaat
    13321 gcaattagcc caaaaacatc tgcaagagga aattgatcgt ctacaaaaag aaattaaaca
    13381 acaacaatta aatacaaatc aattagaatc tataattgct caaagtaaag aggctgaaaa
    13441 acgctatcag caagctttac aacagaaaaa gggaatttac tttgcgcgaa tggaaagagt
    13501 gtctcctatt tatttgcaaa tacagcaaat tgaacaaaag gccaaagaat tggaggaaag
    13561 aagggaaaca gaagcatcaa cagcggcaaa gacactcgca acaaaacttc gtttagagat
    13621 aaaaaattat ctcgacaata atgagtccga tgaaaaaagt gccttaaact cattcaaaat
    13681 aaatgccaaa cggcatattg aaaactcgaa ggaaacgcta aatcaacatc gtgaagaatg
    13741 gaagtacctg ttagccaatg ttactttagg ggtattcttg cttggaatcg gttatctcgc
    13801 cgctattttg attaacaaag caactactgg caattatacc tttttcagcc aaactaacag
    13861 cgggaaaaaa ttggacgcgt tggaaaaagc gatttcctcc actcactccg aaacattagt
    13921 ttatggataa tcttctcttt ttggcatagg ttggcttaaa ttcatcctat gccaataata
    13981 aagacacttg agcataataa gttggacaca gaggcaaaga atcgttccaa ttggcaaatc
    14041 agccattctc ttttaccggg ttaaatcaaa ttgtgccaag ggaaaataat tacttccttc
    14101 tttatcgggc ctactttcga ttaaataaaa tttattaatc ggaactggtg gaatgatagg
    14161 aaattttatt tgcaacaact gctgaagttt tgggctgaaa ttcaccactc tacctacagt
    14221 caaatgccct ctaaaaggac gtttttctaa gggatacttt aaactgtcca tcacctgacc
    14281 aatcattcga gaccaatccc taagtctgtc ttgaggatct acagttaatg aaataagtct
    14341 tggatttttg ggagaaggga accactctaa aacaccgaat tccaaatcaa attgctttat
    14401 atggttaagt tcattactta ctctttcaat caagacctga atatgttttg tttccagtct
    14461 ctgtaaaaat tgcaaggtga tatgcaaatg cattggcttt gtccacctta tggagtgaac
    14521 tggtgccatt tgcctcaatg gctccaaatt actccggata ttttcctgga tcgctggtgg
    14581 tagtgaaata gcaaaaaaag cacgtatagc gttcataata tgagttgcct attggaaaaa
    14641 tattgcaatc cacaaaataa attccgaaaa acaaacgctt tttccaaatt aattatcaag
    14701 atcactactg tttttaaatt ttttgctgcc tgtcaacgac cccgattaat ggcctccagg
    14761 caagctattc attcatcagc attgatgtca aatattgtta ctttttgaat gcattaagta
    14821 agtataaccc atcctactat aattgtaaga tagaggataa aaacaggacc aatacccatg
    14881 catgccatga tcatggaaaa gcctggatgt gaattgcaat atcaggaagt caataaacca
    14941 aatccaaatg aaaatgaact tttaattaaa gtatcagctt gtgggatttg tagaactgac
    15001 ttgcatgttg tcgatggtga gttgaaaaat cccaagactc cccttattcc aggccaccaa
    15061 attgtaggaa ctgttgagca ggttggatcc gctgttaaga aatttgcaat tggacagcga
    15121 gttggagtcc cttggctagg tggaagttgc gggatctgta atttttgcac ctctggccga
    15181 gaaaatttgt gtgatcaagc ctgctttacc gggtatcaaa tagatggtgg tttcgctgag
    15241 ttctgtgtag caaattacca tttttgcttt cctattcccg atggataccc ggatcatcag
    15301 gcagcaccat tattttgtgc tggtttaatt ggatatcgtg ccttgctaaa ggctggtgac
    15361 gcaactcatt taggtctata tggatttgga gcggccgcac atatactgat tcaagtggct
    15421 tgccaaaaag gaataaaaat ttatgcattt acaagcccag gcgatcagga aactcaaaga
    15481 tttgcatacc gattaggtgc tgtctgggcc ggggattcta cgcaatcacc acctcatctt
    15541 cttgatgcag caatcatttt tgcacccgtt ggtgcattag tgcctcaggc tcttagccat
    15601 actgtaaaag gaggtactgt ggtttgtgct ggtatacata tgtcggatat tcccagcttc
    15661 ccttatgaaa tactatgggg tgaacgcact gtatgttcaa ttgccaatct aactcgcaaa
    15721 gatggagaag agttcctgtc tctagcccct aaaatcccag ttaagacaaa agttcaaacc
    15781 tatcccctta ccgaagttaa tcgagcactg gatgatttaa gacatggcag gtatagagga
    15841 gccggggtta ttgttatgaa ataaggctat aattatcaaa agctattaca acaaattcaa
    15901 atcatcaagg aagtaactcg cctcgctcaa aattggttta agcaacattt agaaagaata
    15961 aaataaatac aaaaataaca atataaagtc attgtgaaat gaatttaaaa caattgaaaa
    16021 tattttatct agcaactata tttacattga taagctggtg aatattactt tcggtgtttt
    16081 taacaactaa ctgatacgtc aatttatgga ataaggaggt gacatcatgg gcagcttaag
    16141 aaaacatcaa ccaggtaaaa caactgatct tctgatgagt ccgtttttaa gacttcagca
    16201 agaggtcaat catgctatga gtgattttta taatttattt gaccctcaaa gaagtgccaa
    16261 tcttgagcaa ttcgagcata tttctcttac tccgtctttg gatatcgttg aagataaaga
    16321 taatttcaaa attgaagtag aaatgcctgg tatgggtgaa gaagatatta aagtatcttt
    16381 ttgtgaaaac agattaacca ttgaaggaga gaaaaccact tctaaaaaag atgaaaataa
    16441 aaattatatc agtcgtgaaa ttagttatgg gcgatatgaa cgcaccattt ccttacctct
    16501 atctgcggat gtggataaag cgactgcctc ttttaaaaag ggtatgttat ggatcacaat
    16561 acctaaaaaa actgaagcca aggaaaatgt aaaaacaatt aaaattgaaa aagcaaaata
    16621 attaattcag tcagggtcag gctccaaagc gatggagtca gccccattct tattttttgg
    16681 ctctactttc ccaaatggta gttaataaca taagaattat gcctatgaga gcgcctgtca
    16741 ctgacccaat acccgggtga atttaaactt cctatgacag cgcctaaaat aa
//
LOCUS       DACVWI010000056        16368 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.056, whole genome shotgun sequence.
ACCESSION   DACVWI010000056 DACVWI010000000
VERSION     DACVWI010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16368
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.056"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            55..1404
                     /locus_tag="JBH85_06745"
     CDS             55..1404
                     /locus_tag="JBH85_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0634 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945897.1"
                     /translation="METNMTFVLKEFDTLKSHFNDTVKIILQREKKDKIEDLPNPRKE
                     ELQFLTAVLNQLEAKIDELKPRSLASYVHVFYGAMLLVCKDVENNLRVMEKKENSLLF
                     TRLMDGMGISDENIPTSEQNIMFYRGLNKFLNFIYESNDSRKGLKKEHFLQVLSLKKI
                     YSLAKLSYEQEEAAENNALAKLTADGKTKANANSFHVEKPIDSSIVEQFKSWDEMKGA
                     LHQLILDELSDKNVAKISALSQARSAQLKFLQTMAEQLDKIPNQSLEPSEKMAILAGA
                     MYIVRGQIAQEYGKDPLSNDKISATVIHTGLSTILHANADCCEDKEVLIAAANKFIRH
                     MVIERPEQSNKKITKESIRENNMFSDIAGFQLISVLTLIQNMIKTCRTDAIEACVTKR
                     KEELEALKPKKEGYSIASSVTGYVGSWFKKAPSISEEDEEDDLKDQNTAEETSKPTV"
     gene            1535..2440
                     /locus_tag="JBH85_06750"
     CDS             1535..2440
                     /locus_tag="JBH85_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAU0945898.1"
                     /translation="MTIFFSIDLTHIKFRMKIKTVTRYLLLFSIFFLIGFNNVFAQKK
                     AIAITIDDLPFVGEYRNFHLNMMMNTMKDEKIPATGFIIAKEVRPDNWEILHKFRDAG
                     FGLGNHTFSHANLNKLKAKEYIQEIKEADSLLMPVLTEPKYFRYPYLAMSSGNKKNKI
                     LCYLEKHHYQVAPITIDSKDFVFNQRLLSVPELGRRTYLDELKPFYLDFIWQQTLKAE
                     EHTQYHHNPDQAQILLIHANLLNAYVLPDIINLYKQNGYTFVSLEDALKTFKENYHCH
                     KTRILAKKPVGEETDLNIESFMDWD"
     gene            2663..3370
                     /locus_tag="JBH85_06755"
     CDS             2663..3370
                     /locus_tag="JBH85_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAU0945899.1"
                     /translation="MNKVITESQRFTLRNVANMLLCVDASVLPTQSNIAQKIQTKGIM
                     YNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSVFAIILTLIVPSLRTMILNSRLT
                     SNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
                     LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQS
                     GTTPGQAVWSNGALNCP"
     gene            3383..3922
                     /gene="pilV"
                     /locus_tag="JBH85_06760"
     CDS             3383..3922
                     /gene="pilV"
                     /locus_tag="JBH85_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus modification protein PilV"
                     /protein_id="HAU0945900.1"
                     /translation="MINRMDTLAKDKGMTLLEVLISVVILAVGMLGIASMLIVSNKAN
                     NSSYAKLQAVQAVYDIFDRIRANSDAASNGSYNVSNIGSNGYPTSVSAPSVLCNASVC
                     NPNQLAQYDTWYWLTRVVSQLPNGSGSITSALSGVAGNTVITVTVQWDDSKAQNELGA
                     SSASSGTANFVQFRVQSQI"
     gene            3919..4986
                     /locus_tag="JBH85_06765"
     CDS             3919..4986
                     /locus_tag="JBH85_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAU0945901.1"
                     /translation="MNINYRLQQGFSLVELMIATLVGLILTYSILQIYLAQTQLYKAS
                     NSQDLIQSTENAISNLLIPVIRSAGFAGCGSIITAVSSLNAGGPRPLGILNTTPTILM
                     GYNGSGASFTITQSNPANSSNASHWSPALDSTLVGNAQQGSDVLVVLGSTSDSYPTGI
                     TTIDPGSNTFVVQGTSGMSLTSGMFGAVSDCGKTVIFQITGVAGTTITHDAGAGVLQN
                     ASSAFPVNFQTGSQFIPIQQTAFFVGQGQGGQSALMRASLVGNNWTIQPLVPGVEIMK
                     VQYGIGNNGVITRYVSANAVTDWAQVYAIRLGFLIAGQLGSGSLTTRQYNVLDTQITV
                     PADNRLRHVFELTINLRNSIS"
     gene            4983..5495
                     /locus_tag="JBH85_06770"
     CDS             4983..5495
                     /locus_tag="JBH85_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein"
                     /protein_id="HAU0945902.1"
                     /translation="MNVSSTNQYSKQRGYVLITSLVLMSMLTVLALTQISQNTSQTRI
                     ATNATDSEISFEKTEGAINEAINLIINGTYNPQSFLASNNGMYLFDQSATTPLWKTIN
                     WSSGSAVINSFQGNTGAQASYYLEKLPSVIMPGQSMKKPSNVYRITARSSGASGDTSV
                     LIQSTIQIQQ"
     gene            5499..9017
                     /locus_tag="JBH85_06775"
     CDS             5499..9017
                     /locus_tag="JBH85_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilY"
                     /protein_id="HAU0945903.1"
                     /translation="MIIMDALTFWNFTRKGSQKAIKVLPRTLMAILLSASVSLYAVPL
                     AIPQIPLIIASPVHPQVLILLSNSQSMDGNLSGAIMTGSGSLSTGLSSLYNSSSPVNY
                     TVPAGFTPPVQGPDANGLAPYTVVQGGNKVDNSASRLNVAKAGIKAIIENYMPTTDFA
                     LGTYSTSNISSYNTWVYYMSPPGSDFVFTNTPVAGNRYVTNPCYNYGSASSTVSSNCS
                     SIGSLYGTTLVSSSQYLQIGDSSDDPDINDVLYAGSGFPGIFVSYNGPTPSSPFPPNY
                     TISNYNQGNIRISYANTRPSIGNFSSSPTNAGFVPFSQQVMYVQRGFGYYSNQSYATG
                     NMLVNMQTAGTNPTTTSVNNAINAFLPHLKPETNSTATTEIKAAAVQSPLAGLLTRSR
                     SFMKTVGTTSGNCPQKQYIILISDGLPTQDLQSRYWPPLGSAAATGYGVTATFNADGS
                     LNSTNSQALSDAINEIKALKNDGVLTFIIGMGAGVDPAVNPEAAATLRAMAVAGGTEN
                     YYPATSPEALVSSLNSILSNIQNGSFSTSAAAISSTRIDSSTVEYQANFITRDTPYQD
                     WTGNLTAIELDENTGQPTNIIQWSAQSTLDSLVSGTGWSTNRKIATWDPIAADGVPFR
                     WANINATQQAQLQPSDLLGENRLEYLRGNAALEKRNGGTFRDRSHALGDIIDSQVIYV
                     GPPSAPYLTASYISFAKANANRQPMLYVGANDGMLHAFNATTGEEFFAFIPNAVFNNL
                     HQLTSPLYNQNHLFFVNGSPESADVQFSDGSWHTILVGGENAGGKSIFALDITNPTNL
                     SSEPGVANAVLWEFTDTDLGLTYSKPQIGQIRSGSPSSLNFAVFFGNGYNNTNNKSVF
                     YAVDPQTGTLLRKIDLCAAVPSACNVNLPQGLSTVALGQKDGLQADPVTVVYAGDLQG
                     NLWAIDVSSADPASWSARVLFQARDSAGTPQPITTPPLVTLNPNYPRNPGLFVVFGTG
                     QLLTTSDLVTTQRQTIYGVWDKPLSSVPYVRANLQQQTLTLVNSATSGLSTNIITATA
                     ATINWSNKVGWFADLPIAGQRLITTPELINGAFIATINTPPLNSCGFGFTSMLLELNF
                     LNGGAFQYARFDISGDGGFDIADQYNGAYPVGIGLSNSYANSPTVLGPNKDNNLVILI
                     TQSDGTQTTVIAPNITPRKIGWWQIQ"
     gene            9029..9478
                     /locus_tag="JBH85_06780"
     CDS             9029..9478
                     /locus_tag="JBH85_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAU0945904.1"
                     /translation="MLSHVHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQY
                     IQKSRRADAHATLTQDQIILERCYSQNFSYAAACGALPAFPQTTPNGYYTINISNLTA
                     TTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG"
     gene            9556..11763
                     /locus_tag="JBH85_06785"
     CDS             9556..11763
                     /locus_tag="JBH85_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HAU0945905.1"
                     /translation="MEIYCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGC
                     GFALIHQWIVSPKGMPDTQVITQAQLEGTIASIPMQRPNKTQFHFAIEKINNNPAQGL
                     IQLNWYNKPPVLRAGQRWQLSVKLKKPRNFRNPGGFNYVRYLAARHIHWTGYIRYGNN
                     KLISNQPPSFSWLTLREKIGDALTKLAPNTETAGIIEALTLNVTHHISSEHWNLFRRT
                     GTVHLFGISGEHIALVSCIFFIVIRWIWSMSYRCCLFLPAHTIASIGGLLAALPYAFL
                     AGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIEPHAVFLQGFYFSFL
                     AVACLLLTHQRWPLKNYKKTLTLQLSCLIGLMPLTLHWYSYGSINGFLANLFSIPLVS
                     FLIVPLALMTMITSPLHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMM
                     LAMTAGLFLRVLLPVKPFKHLAILWIILPLFPPRTAIYPGEALINILDVGQGLAVAIQ
                     TQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGGLNSLEK
                     EMQVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIKESFTKKNNNSCILQVSNS
                     AGRVLLTGDIEKAAEEYLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIAS
                     LGFDNRFKFPHSKTLQSMKTLDITFFRTDECGMAAIKLPASGQVHRPSCMQAN"
     gene            complement(11819..13174)
                     /locus_tag="JBH85_06790"
     CDS             complement(11819..13174)
                     /locus_tag="JBH85_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAU0945906.1"
                     /translation="MCYHLIIDSFIDRISRMHTQRGLEVTTGSIEAVDSINYFHEQVL
                     SSGQNAIQILDSAKKHTDNLLIQTYAAAFYLYAQEDVANEQASDYLQSASRLLTSANE
                     REKLTFEAVTNWSKRDYANAISLLVTLLERYPRDTLALKFVEWLFYCTGQAFNAEYFL
                     KVCDKCAPENQDESHFLAIHSFALELCGQYSKAREMAEEAITMNLHTPWAHHTLAHVH
                     LLTSDITGGINRLRDLQKTWEDILPLLKGHNTWHLALFYLANRDEEEVKKLYPHISGA
                     LPDTVLEQLDTISLLWRMDMAGLPQDRLLNQVVDHLSTHPLEFYTGFTNAHFIYCLVK
                     SGYKNEADESLKRMKSYACAPSSDALWGDVVLPLCQGIYAFADADYKTALMLMEPVIG
                     ECAQLGGSDAQIELFFQTYLLVLIHTNQKDKALQFFTEHLKYYNNTPLSDWWFQSANK
                     T"
     gene            complement(13327..13704)
                     /locus_tag="JBH85_06795"
     CDS             complement(13327..13704)
                     /locus_tag="JBH85_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945907.1"
                     /translation="MMKKINLFKLLMIFVLGTSALQAAGLSTQRIEQLSNARVTVWKT
                     IIYPSSKQVLPMHRHDNDRVLVALTDGTLKITNNKGKVHYLKLKKGKSYYLTKDVPNE
                     LHNDENVTNHSIQVMVIQLNDKA"
     gene            13841..14233
                     /locus_tag="JBH85_06800"
     CDS             13841..14233
                     /locus_tag="JBH85_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945908.1"
                     /translation="MLTTFLATVIGWYLVIVSLFLLFHNEHAKSAMAEIIAHRGSQLI
                     MAIVTLITGLLLVVSHNIWIMGWPVVITLFAWLVLLGGLIRFLCPDTAVRVGQSFVDN
                     PMRLKIAAVIFFIIGLFLLFNVYYVYLK"
     gene            14359..16287
                     /locus_tag="JBH85_06805"
     CDS             14359..16287
                     /locus_tag="JBH85_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945909.1"
                     /translation="MTRAQTHPHQTTVISNLKIIPLTLGWLLKFALLIIIIAVFTPLS
                     PKMPAPGLDASWAVGLNQAVAQGLAFGKDIFFTLGPYSSIYTKFYHPATNFMMVGGSL
                     YLALCYWIAIILLMQGIKWRWSIAFAILLFSMIYARDSLFFSYSLIIGLLIHKEIPGK
                     ETSLKSNFFTLFALLFTPFGLFPLIKGSLLILSIITILLCSFFLSLYKQRNLVVLCLA
                     SPVVSILFFWIASGQSVFNLPAYISNTISLASGFTEAMATEGDNKELIFFGITSSCIL
                     LSILLQKQLSPLSKAFLFCIYFVFLFLSYKTGFTRHFGHAFIAGTSVLLASFLLPYFN
                     SNNKVIVPLLALSLYTANYINGHYTKISVRDNFISTYTAAYYGLQNRIQNKNWLKENF
                     SLTMNYLKARDDFPRLPGTTDIYSYNQTSLIASGMQWSPRPIFQSYSVFTAKMAEINT
                     NYLLSENKPDNIIFKVEPIDNRIPSMEDGMSWPTLINHYQPVRLENDFLFLRKKLVNK
                     PVTSLVPLKTEIHTFGEQVKIPDTDKPLFVEIEIQPTLWGRLATTFFKPHQLEANLEL
                     KNGTQRQYRLISNMAKSGFLLSPLIENSAEFGLLFSQNNYLAGKKVISFSINSKQVPS
                     SHWQTKYTIHYKIFASNN"
BASE COUNT         4944 a         3495 c         3088 g         4841 t
ORIGIN      
        1 tttagtttac actggccact gtaagtattt cttacattaa tcttacttgg atttttggag
       61 actaacatga cgtttgtttt aaaggaattt gatacactaa aaagtcattt taacgacacc
      121 gttaaaatca tccttcaacg cgaaaaaaag gacaaaattg aagaccttcc caaccccaga
      181 aaagaagaac ttcaatttct gaccgctgtt ctcaatcaat tggaagcaaa aatcgatgaa
      241 ctgaaaccac gttcattggc cagctatgtc catgtatttt atggtgctat gctgcttgtc
      301 tgtaaagacg ttgaaaataa tctgcgggtg atggaaaaga aagaaaacag cttactgttt
      361 actcgcttaa tggatggtat gggtatttct gatgaaaata taccaacatc cgagcagaac
      421 atcatgtttt acagaggatt aaacaaattc ttaaatttca tttatgaaag caatgattct
      481 cgtaaaggct taaaaaagga gcatttcctg caagtccttt cgttaaaaaa gatatactct
      541 ttagccaaat taagttatga gcaggaagag gcagctgaaa ataatgcttt ggcaaaatta
      601 actgctgatg gaaaaaccaa agccaatgcg aacagcttcc atgtggaaaa accaatcgat
      661 tcatccattg ttgagcaatt caaatcctgg gatgaaatga aaggcgctct tcatcaatta
      721 attctcgatg aactttctga taagaacgtt gctaaaattt cagctttaag ccaagcccgc
      781 tcagcacaac tgaaattttt acaaacgatg gcagaacagc tagacaagat ccctaaccaa
      841 tctcttgagc cgtctgagaa aatggccatt cttgctggag caatgtatat cgttcgtggc
      901 caaatagccc aggagtatgg aaaagatcca ttaagcaacg ataaaatcag cgctactgtg
      961 attcatactg gtttaagcac gatacttcat gccaatgctg attgctgtga agacaaggaa
     1021 gtactgattg ctgctgcgaa taaatttatt cgtcatatgg ttattgaacg ccctgaacaa
     1081 tcaaataaaa aaatcactaa ggaatccatt cgagaaaaca acatgttttc cgacatcgcc
     1141 ggcttccaat tgatctctgt cttgacgtta atacaaaaca tgatcaaaac atgtcgtact
     1201 gatgccattg aagcttgtgt caccaagcgt aaggaagaac tcgaagcatt aaaacccaaa
     1261 aaagagggtt attccattgc gagttcagtc actggatatg taggcagctg gtttaaaaaa
     1321 gcaccaagca tatctgaaga agacgaagag gatgacttaa aagatcaaaa cacagcagaa
     1381 gagaccagta aaccgaccgt ataataattt gaacaattaa cgtcgatttt cattcataaa
     1441 cagccttatt ttcaaaataa ggctgtttat ttcgtgtttc ttattttaat aagctcttaa
     1501 atataagcta ttcatcgtaa tttttgttac aatagtgaca atatttttct caattgacct
     1561 tacacatatt aaatttcgaa tgaaaatcaa gactgttacg agatacttac tacttttctc
     1621 aatatttttc ctgataggat ttaacaacgt atttgctcaa aaaaaagcca tagcaatcac
     1681 tattgatgat ttgccctttg ttggtgaata ccgaaacttt catctgaata tgatgatgaa
     1741 tacaatgaaa gacgaaaaaa tcccggcaac aggttttatt attgccaaag aagtcaggcc
     1801 tgataattgg gaaatacttc ataaatttcg tgacgcaggt ttcggcttgg gcaaccatac
     1861 tttttctcat gccaatttaa acaaactcaa agcgaaagaa tatatacagg aaattaaaga
     1921 agcagattca cttttaatgc ccgtcctaac tgaacccaag tattttcgtt atccctattt
     1981 ggcaatgagt tctggaaata aaaaaaataa aatcctctgc taccttgaaa aacatcacta
     2041 tcaagttgcc ccgattacca ttgacagcaa agattttgtc tttaatcaac gcttattatc
     2101 tgtgcctgaa ctgggaagga gaacttacct ggatgagttg aagccatttt atctggattt
     2161 tatctggcaa caaacgttaa aagctgaaga acatacgcaa taccaccata atccagatca
     2221 agcacaaatc ctgttaatcc atgctaactt acttaatgcc tatgtcctgc ctgatattat
     2281 taatttatac aaacaaaatg gttacacgtt tgtgagtctg gaagatgcct taaaaacatt
     2341 caaagaaaac tatcattgtc acaaaaccag aatccttgca aaaaagcctg tcggagagga
     2401 aacagattta aatatagaat catttatgga ttgggattaa taagctccat gaagtcttca
     2461 gactgtaaaa ttttttttgc caaaccaatg tttctggccc ctatataatt ctctctatat
     2521 aaccttgcta accggactat ccttaaaatt gtaatagcta actgggccaa gcatttgcta
     2581 gccaattatt tgtaaaaaat ttaactaatt tgaactataa ttaataatgt agtgggttcg
     2641 atcaaacgat agggataatg ctttgaacaa agtgataacg gaatcacaaa ggttcactct
     2701 gcgcaacgta gctaatatgt tattgtgtgt ggatgctagt gtattgccca cacaatctaa
     2761 tatagcacaa aagatacaaa caaaaggcat aatgtacaat gacctttgta aagacagctt
     2821 cgatactgag gtccctctta acagcaaccc tctttccata gccggattca cactggttga
     2881 attattagta accctatctg tttttgccat tatcttaact ctaatcgtcc cttcattaag
     2941 aactatgatt ttgaatagcc gtttgacttc aaacatcgac tcactggtaa gctcattaaa
     3001 ctatgcgcgt ggagtggcac ttgatcgggc agtcaatgtg gcagtatgtc cattaggttc
     3061 accaggttca acagcctgtg gagccaactg gagctcagga tggatagtag tgacccaacc
     3121 agtagcagga gcaccaacgc ttttaaaatc gcaccagact tcagtaaatg atcctgttat
     3181 cacttcgaac gtatccagtg ttgtttttga cccacatggg ttatcaacaa cccaaagtaa
     3241 cttcactatg tgtgataacc gaggcaatgc gtttgcccgc tcggcaatgg ttttggccac
     3301 tggatttgtc caatcaggaa caacacccgg ccaggcagtc tggagtaatg gagctctgaa
     3361 ctgcccttaa cggagataga atatgattaa ccgaatggat acattagcaa aagacaaggg
     3421 aatgactttg ctggaagtgt tgatatctgt agtcatatta gccgttggca tgctagggat
     3481 cgccagtatg ttgatagtca gtaataaagc gaacaattcc agttatgcaa aactgcaagc
     3541 agtacaagca gtctatgata tttttgacag aattcgagcg aattcggatg cagcatctaa
     3601 tgggagttat aatgtcagta atatcggcag taatgggtac cctacgtccg taagtgctcc
     3661 ttcagtatta tgcaatgcat cggtatgcaa tccaaatcaa ctggcacaat atgacacctg
     3721 gtattggctc accagagtgg tgtcgcaatt gccaaatgga agcggttcaa taacttctgc
     3781 tctttcaggt gtggcaggaa ataccgtgat taccgtgact gtacaatggg atgatagtaa
     3841 agcacaaaat gagttagggg caagcagcgc ttcttcagga actgccaatt tcgttcaatt
     3901 cagagtacag agtcagatat gaatattaac tacagactac aacaaggatt ttcattagtc
     3961 gagttaatga tagccacctt ggttggactg atactcactt attcaatttt acaaatatac
     4021 ctggctcaaa cccaacttta caaagcatca aactctcagg atcttattca aagtactgaa
     4081 aatgccatat ccaatttact cataccagtg atcagatcgg ctggatttgc cggctgcgga
     4141 tccattatca ccgcagtttc cagtctaaat gctggtggcc caaggccttt gggaatattg
     4201 aatacaacgc caacaatcct tatgggttac aatggcagcg gagcgagctt cacaataacc
     4261 caaagcaatc ctgcaaatag cagcaatgcc agtcattggt cacccgcatt agattccacc
     4321 cttgttggca atgctcaaca aggtagtgat gtgttggtag tattaggctc tacctctgac
     4381 agctatccaa caggaataac cacgattgat cccggcagca atacctttgt agttcaaggc
     4441 actagcggga tgtcccttac ctctggaatg tttggagcgg tctctgattg tggtaaaacc
     4501 gtaatatttc aaattactgg agtagcagga acaacgatta ctcatgatgc aggcgctgga
     4561 gtgctacaaa atgcaagcag tgccttccct gtcaattttc aaaccggctc ccaattcatt
     4621 cccatccaac aaactgcatt ttttgtgggt caaggtcaag gagggcaaag cgcattaatg
     4681 cgggcctctc tcgttggcaa caactggaca atacagccat tagttcctgg ggtggaaata
     4741 atgaaagtcc agtatggtat tggcaataat ggcgtcatta ctcgatatgt ctctgctaat
     4801 gcagtaactg attgggcaca ggtttatgcc attcgtttgg gatttttgat agcaggtcaa
     4861 ctcggctcag gaagcttgac aaccagacaa tacaacgttt tggatacgca aatcaccgta
     4921 cctgcggata accgcttaag gcatgtattt gaattgacca tcaacttgag gaactcaata
     4981 tcatgaacgt atcctccaca aatcaatatt caaaacaacg gggttatgtc ctgataactt
     5041 ctcttgtact tatgtcaatg cttaccgttt tggccctgac ccagatatca caaaacacgt
     5101 ctcaaaccag gattgcaact aacgcaaccg attcggaaat cagttttgaa aaaactgaag
     5161 gtgccattaa tgaagccatt aatctgatca taaatggtac ttataatcca caaagttttc
     5221 ttgcttctaa taatggaatg tatttatttg atcaaagtgc tactactcca ctttggaaaa
     5281 cgattaactg gtcaagtggt tcggcagtca ttaacagctt tcaaggcaat acaggggcac
     5341 aagccagcta ttaccttgaa aaactgccgt ccgtgattat gccaggccag agtatgaaaa
     5401 agccaagtaa tgtctacaga ataactgctc ggtcatcagg agcaagcggg gatacttccg
     5461 tacttataca aagtacaatt caaattcaac agtaggtttt gattatcatg gacgctttaa
     5521 cattttggaa tttcaccaga aagggaagtc agaaagcaat aaaagttcta cctcgaacac
     5581 ttatggctat tctgttgtct gcttccgttt ctctttatgc cgttccttta gcaattccgc
     5641 aaatcccact aatcattgcc agccccgttc atcctcaagt gttgattctc ctcagtaact
     5701 cccaatcgat ggatggtaat ttgagtggag caatcatgac aggatccggc tctctgtcaa
     5761 ctggtttaag ctccctttac aattccagct caccagtgaa ttataccgta ccggctggat
     5821 ttactccgcc agtgcaaggc cccgatgcca acggcctggc tccttatact gtagttcagg
     5881 gcgggaataa agtagataac agcgcaagcc gtctcaatgt ggccaaagct ggaatcaaag
     5941 cgattattga aaattacatg cctaccaccg actttgcatt gggcacttac agtacaagca
     6001 acatcagttc ttataacact tgggtttatt acatgtcgcc acccggcagt gactttgtgt
     6061 tcaccaacac cccggtagct ggaaatcgat acgttaccaa cccttgttat aattatggtt
     6121 ccgcatcgtc tacagtttca agcaactgct catccattgg aagcttatat ggtacgactt
     6181 tggtttcttc aagccagtat ctgcaaattg gtgattccag cgatgatccg gatattaatg
     6241 atgtactcta cgctggaagc gggtttcccg ggatttttgt cagttataat gggccgacac
     6301 catccagtcc ttttcccccc aattatacga tctccaatta taaccagggc aacatcagaa
     6361 tttcctatgc gaacacaaga ccttctattg gcaatttttc ctcttctccc actaacgccg
     6421 gttttgtacc tttttcacag caggtaatgt atgtgcaaag gggatttgga tattacagca
     6481 accaatccta tgccactggc aatatgctgg tgaacatgca aacagcgggt accaatccaa
     6541 cgactaccag tgtcaacaat gccattaatg cctttttacc tcatttgaaa ccggaaacca
     6601 actccactgc gaccactgaa ataaaagcag ctgcagtaca atcccccctc gccggactac
     6661 tgacccgctc acgaagtttc atgaaaactg tgggtacaac cagtggcaat tgtccgcaaa
     6721 aacaatacat catattaatt tctgatggat tgccaaccca ggacctccag tcaaggtatt
     6781 ggccaccact aggcagcgcg gctgccaccg gctatggggt caccgcaaca tttaatgccg
     6841 atggctcact gaacagcacg aacagtcagg ccctgtccga tgcaataaac gaaataaaag
     6901 ctttaaaaaa tgacggtgtt ttaactttta taatagggat gggagcaggt gtggatcctg
     6961 ctgtaaatcc tgaggcagca gcaactctca gggccatggc cgttgcagga ggcactgaaa
     7021 actattatcc ggcaacgagt cctgaggctc tggtcagcag tttaaattcc attctatcga
     7081 atatccaaaa tggctctttt tcaacctctg cagcagccat tagctcaact cgtatcgaca
     7141 gcagcaccgt ggaatatcaa gccaacttta ttacaagaga tacaccttat caggattgga
     7201 ctggtaattt gacagctatt gaactggatg agaatactgg ccaaccaaca aatattatac
     7261 aatggtcagc tcaatcgaca cttgattccc tggtatcagg aaccggatgg tcaactaacc
     7321 gaaagatagc gacttgggat cctatagccg cagacggagt accgtttcgc tgggcgaata
     7381 ttaatgccac ccaacaagca caactgcaac caagtgattt gttaggagaa aaccgattag
     7441 aatacctgcg tggcaatgcc gccctggaaa aaagaaacgg gggaacattc cgtgatcgct
     7501 cgcatgcttt gggagatatt atcgatagcc aggtaattta tgttggtccc ccaagtgccc
     7561 catatttaac cgccagttac atcagctttg caaaagccaa tgccaatcga cagccgatgt
     7621 tatacgttgg ggcaaatgac ggaatgcttc acgcctttaa tgcaaccact ggagaagagt
     7681 tttttgcatt tattcccaat gccgtgttta ataatctcca ccaactcact tctcctctgt
     7741 acaaccaaaa tcatttattc ttcgtcaacg gctctccgga aagcgctgat gtacaatttt
     7801 ccgatggttc ctggcatacc attctggtgg gaggtgaaaa tgcaggtggt aaaagcatct
     7861 ttgccctgga cattacaaat ccgacaaacc ttagttctga accaggagtg gccaatgctg
     7921 tgctctggga atttacagat actgacttag ggttaactta tagcaaacct caaataggtc
     7981 aaatcagatc cggaagtcca tcttcattaa attttgccgt cttttttggc aatggataca
     8041 acaatactaa caacaaatcg gtattttatg ccgtagaccc tcaaacagga acactactaa
     8101 gaaaaataga tctttgtgct gctgtccctt cagcctgcaa tgtcaattta ccccagggat
     8161 tatcgacagt cgctttggga caaaaagacg gattgcaagc cgatcctgtt actgtagtgt
     8221 atgccggtga tttacaaggc aatctatggg caatcgatgt ttcctcggct gatcctgcca
     8281 gttggagtgc gcgtgtatta ttccaggcaa gagactctgc gggtacaccg cagcctatca
     8341 ctactcctcc tttagtgaca ttaaatccta attatcctcg caatccagga ctttttgttg
     8401 tgtttggcac cggacaactt ctgaccacat ccgatttggt cactacccaa aggcaaacca
     8461 tttatggagt atgggacaag ccgctttcat ccgtacctta tgtacgtgcc aatctccagc
     8521 aacaaacgtt gaccttggtt aactcagcta catcaggttt atccacaaac attatcactg
     8581 ccactgctgc taccatcaat tggagtaaca aagtgggatg gtttgccgat ttgcctatag
     8641 cgggacaaag actcattact acacctgaac taattaacgg ggcatttatt gcaacaataa
     8701 ataccccacc tcttaattcg tgcggctttg gattcacatc catgcttctg gagcttaatt
     8761 tcttaaatgg cggggctttc caatatgcgc gatttgatat ttccggagat ggcggctttg
     8821 atatagccga tcagtataat ggggcctacc cagttggaat tggcttgtcc aacagttatg
     8881 ctaactcacc aactgttctg gggcctaaca aggataacaa tctggtcatt ctgatcacac
     8941 aatcggatgg aacacaaacc actgttattg cacctaacat tacgccaaga aaaataggct
     9001 ggtggcaaat tcaatagagg atacccaaat gctcagtcat gtacatttta tgaagaatag
     9061 ccgtatgaaa caatccgcgt ttaccctggt tgaagttctg atcagcatgg tcattatggg
     9121 aattctggtt tcaattgcct atccatccta tttacaatat atacaaaaat cccgtcgtgc
     9181 tgatgctcat gccacattga cacaagatca aatcatttta gaacgctgtt attcacagaa
     9241 tttttcctat gcggcagcgt gtggcgccct accagcattt cctcaaacaa cgccgaatgg
     9301 gtattatact atcaatattt caaacctgac agccacaacg tataccttaa ccgcaacccc
     9361 tgtcggaacc caagccaaag ataccgagtg tgccagtatg tcaattaacc aggccaatgt
     9421 aaaaacagcc gtagattcct ccgctaatgc gcaaccagaa tgctggaatc ccggttaata
     9481 ctgtaaaaaa ttctttacac aaaggattca attcgagtag atttgccagt aagggaaagt
     9541 ccaacttaat ttgaaatgga aatttattgc tttttaatag gcgtacttta tgcctatacc
     9601 tataatattt atctaactat tgcgattcct ttactctttt atatcacacc aagatatcca
     9661 attgtcctgt tcttcatcgc cgggtgcggc tttgccctga ttcatcagtg gattgtatct
     9721 cccaagggca tgcctgatac gcaagtaatc actcaagccc aattggaagg aacaattgct
     9781 tccatcccca tgcaacgtcc taacaaaact caattccatt ttgcaattga aaaaattaat
     9841 aataaccctg ctcaaggctt gatccaatta aactggtata acaaacctcc tgtcttacga
     9901 gccggtcagc gatggcaact ttcagtgaaa ctaaaaaaac ctcgtaattt ccgcaaccca
     9961 ggaggtttta attatgtacg ttacctggcg gctcgtcata tccattggac tggttatatt
    10021 cgttatggga ataataagct aattagcaat caaccccctt ctttcagttg gttaacactg
    10081 cgtgaaaaaa taggggatgc tttgacaaaa ctggcaccga atacagaaac ggcaggcatc
    10141 atcgaagcat tgacgttaaa tgttactcac catatcagtt cagaacattg gaatttgttc
    10201 cgaagaacag gaacggtaca tttattcggg atttcagggg agcacatcgc tctggtctcc
    10261 tgcattttct ttatagtgat aagatggatt tggtcaatga gctatcgttg ctgtttgttc
    10321 ttaccggccc ataccatagc gagtatcggt gggctactgg ccgccttgcc ctatgctttt
    10381 ttagccgggt ttgaacctcc tgtacagcgt gctttaattg gttgtgtact ttacacaata
    10441 tacgccatag gaaaacaacg ttttacacca tggcaaatat ggagatacgc cttattttta
    10501 gtcttgtgta ttgaacccca tgccgtattc ctgcaaggtt tttatttttc atttcttgct
    10561 gtggcctgtc ttctattgac gcaccaacgt tggccactga aaaattataa aaaaacactg
    10621 acattacaat taagctgcct cattggattg atgcccttga ctctccattg gtactcctat
    10681 ggttctatta atggattcct tgccaattta ttctccatac ctttagtcag ctttctgata
    10741 gtacccttgg ctttaatgac tatgataacg agtccgcttc attggtcctg gatattgatg
    10801 aaaccattgg catggcttgt tgccctgtta ctgcaaggac taacgtatgt tgagcaaata
    10861 gcagggatta atatcacctg gtccatcacc tcggtaacaa tgatgctcgc tatgacagca
    10921 ggtctgtttt taagggtatt attacctgtc aagccattca aacacttggc tatcctttgg
    10981 attatccttc ccttatttcc gcctcgtact gcaatttatc caggggaagc attaattaat
    11041 attttggatg ttgggcaagg actggctgtt gcgatacaaa cgcaacatca tgttttactc
    11101 tacgatacgg gagattccta ttttcagggg agtgatttag ggcaaatggc gataataccc
    11161 tttttcaggt caattggaat aaaaacaatt gacaaaatag taataagcca tcctgataaa
    11221 gatcataagg gcggattaaa ttcccttgaa aaagagatgc aagtcaatca attaatagtg
    11281 aatgatccct atttttataa acgtggaagt aattgtcatt catacccaca atggcaatgg
    11341 gatggggtga gttttcgttt tttacccatc aaggaatctt tcactaaaaa aaataacaat
    11401 tcttgtatct tacaggtaag taattcagct ggcagggttt tattaacggg agatattgaa
    11461 aaagcggctg aagagtacct ggtaagaaac tacggcagtc agctggcatc cgagatttta
    11521 gttgtgcctc atcatgggag taaaacgtct tcatcctatc gatttttgct ggaagtaaac
    11581 ccgctttatg ccattgcatc cttaggattt gataatcgtt tcaaatttcc acattctaaa
    11641 actttgcaaa gcatgaaaac attagatatc acttttttta gaacagacga atgcggaatg
    11701 gcagcaatca aactacctgc atcaggtcaa gttcacagac caagttgtat gcaggctaat
    11761 tgaatagatg cattggctgg ccaatgtatt ttacttcatc attccaagtg ctatacctct
    11821 aagtcttatt agccgattgg aaccaccagt cactcaatgg tgtattattg taatacttta
    11881 aatgttcagt aaaaaattgt aacgctttgt ccttttgatt agtgtgtatc aacaccaaca
    11941 agtaagtctg gaaaaaaagc tctatctgtg catcgcttcc acctaattgt gcacactcac
    12001 caatcaccgg ctccatcaac atcaaggcag ttttgtaatc tgcatcagca aaggcataga
    12061 taccctggca caaaggtaaa acaacatcgc cccatagagc atcagaagaa ggcgcacagg
    12121 cgtaagactt cattcttttc aacgactcat ccgcttcgtt tttataaccc gatttcacca
    12181 gacaataaat aaaatgagcg ttcgtaaacc cggtataaaa ttccaaagga tgggtactta
    12241 aatggtccac aacctgattt aacagcctgt cttggggtag acctgccata tccatgcgcc
    12301 ataacaggga aatagtatcc aactgctcaa gcaccgtatc aggcaatgcc cctgaaatat
    12361 gggggtataa ctttttaacc tcctcttcat cacgatttgc caaataaaat agcgctaaat
    12421 gccaggtgtt atggcctttc aacaaaggta aaatgtcctc ccaggttttt tgtaaatctc
    12481 gaagtctatt gataccacca gtgatatcac ttgttaataa atgcacatga gccagggtat
    12541 gatgtgccca aggggtatgc aaattcattg tgatagcttc ctcagccatt tccctggctt
    12601 ttgaatattg cccacacaac tccaaagcaa aggaatgtat ggctaaaaaa tgggactcat
    12661 cctgattctc gggagcgcac ttatcacata ctttaagaaa atactcagca ttaaaagcct
    12721 gtcctgtaca gtaaaaaagc cattccacga atttaagagc cagggtatcc ctgggatacc
    12781 tttcaagcag agtaactaac aagctaatgg cattggcata atctcgctta gaccaattgg
    12841 ttactgcttc aaaagttaat ttttcacgtt cattcgctga tgttaataac ctggatgctg
    12901 attgcaaata atcgctggct tgttcattcg ctacatcttc ttgtgcatac aaataaaaag
    12961 cagccgcata agtttgaatt aataaattgt cagtatgttt ttttgctgaa tccagaattt
    13021 ggattgcgtt ttggccggag cttaatacct gttcgtgaaa ataattgata ctatctactg
    13081 cctctatgga gcctgtcgtt acttccaatc cacgttgagt atgcattctc gaaatcctgt
    13141 caatgaatga atcaatgatt aaatgatagc acaaataata aacaaaaagg acggaagtaa
    13201 cgctccaatt agataataat acgacctgat atcacgatga ctgcggtaga gctacaagca
    13261 ctcttgctaa aattgttttt cctggccagg aattaataca acatcagatt acccacttcc
    13321 cgctaatcat gctttatcat tgagttgaat taccatcacc tgaattgaat ggttagttac
    13381 gttttcatcg ttatgtaatt cgttaggaac gtctttggta agataatacg acttgccttt
    13441 ctttaatttt aaatagtgta ctttcccttt gttgtttgta attttcaatg tcccatccgt
    13501 caatgcgacc aaaactcgat cgttatcatg cctgtgcatg ggcaaaactt gttttgaaga
    13561 gggatagata attgttttcc acacggttac cctggcatta gataattgtt caatacgttg
    13621 ggttgataat cctgcagcct gaagtgcact tgtacccaga acaaagatca taagcaattt
    13681 gaataaatta atttttttca tcatgttaga ttattctcca ttttcaaatc aaataacagt
    13741 gtgtcatttc gcttattcct caattttcct ttaactttcc ggcacatagc tcacaaaatt
    13801 gctataatta tagtaggagg taattgtaag gagtttgaag atgttaacta catttctagc
    13861 cacagtgatt ggctggtatt tagtcatagt aagcttattc ttattattcc ataatgagca
    13921 tgcaaaatca gctatggcag agattatagc tcatcgcgga tcgcaattga ttatggctat
    13981 agtaaccttg attacaggtt tgcttttagt cgtcagtcat aatatctgga taatgggctg
    14041 gcctgttgtt attactcttt ttgcatggtt agtcttgctt ggtggtttaa taagattttt
    14101 atgccccgat accgcagtta gagtaggcca atcatttgtc gataatccaa tgagactaaa
    14161 aatagcagct gtaatattct ttattattgg tttgttcctg ttatttaatg tctattatgt
    14221 ttatttgaaa taaaggaaga gttattgggg tactgtgact cattctgttt atggggaaaa
    14281 ggaagcgata aagtccttgt caattcagca gcaaggaatg ctatgatatg atgcttgata
    14341 tgatatacct acaaaaaaat gactagagcc caaacccacc ctcatcaaac gaccgttatt
    14401 tcaaacctca aaataattcc actcactttg gggtggttat taaaatttgc tttgctcatt
    14461 attataatcg ctgtttttac tccactatcc cccaaaatgc cagctcccgg tcttgatgct
    14521 tcttgggctg taggacttaa tcaagccgtt gcccaaggtt tggcctttgg taaagacatt
    14581 ttttttacct tagggcctta ttcttccatc tatacaaaat tctaccaccc tgctaccaat
    14641 tttatgatgg ttgggggaag tttgtatttg gctttatgtt actggatagc tattattctt
    14701 ttaatgcaag gcattaaatg gcgttggagt attgcttttg caatacttct ctttagtatg
    14761 atttatgctc gggattcttt gtttttttcc tattcattaa tcattggcct actcattcat
    14821 aaagaaattc ctggaaaaga aacatccttg aaaagcaatt tcttcacttt atttgctttg
    14881 ctttttacgc cattcggttt atttcccctg atcaagggct ctcttttaat attaagtatt
    14941 attaccatac tcttatgctc tttctttttg agcctatata aacagcgtaa tcttgttgtg
    15001 ctttgtctgg catctccagt agtttccata ttgttttttt ggatagcatc cgggcaatct
    15061 gttttcaatc tgccagctta tatcagtaac actatctcgc tcgcatcagg ttttactgaa
    15121 gccatggcaa ctgaaggaga caataaagaa ctaatatttt ttgggattac ctcttcttgc
    15181 attctcttat caatactcct gcaaaaacag ctctcaccat tatccaaagc atttctattt
    15241 tgcatctatt ttgtttttct tttcctctct tataaaacgg ggttcacaag acattttggc
    15301 catgccttca ttgctggtac ctctgttttg ctagcctctt ttttattgcc gtattttaat
    15361 tccaacaaca aagtgatagt cccattatta gctctatccc tttatacagc gaattatatc
    15421 aacgggcact ataccaaaat atctgttcga gataatttca tttccaccta taccgccgct
    15481 tactacggcc ttcaaaacag aatccagaat aagaattggt taaaagaaaa tttttcatta
    15541 acgatgaatt atttgaaagc ccgtgatgat ttccccagat taccaggtac taccgatatt
    15601 tattcctaca atcaaacttc attaatcgcc tcgggaatgc aatggtcgcc aaggccaatc
    15661 tttcagagtt attccgtttt tactgcaaaa atggcagaaa tcaatacgaa ttacctttta
    15721 agcgagaaca aaccggataa catcattttt aaagtagaac caattgacaa tagaattcct
    15781 tcaatggaag acgggatgag ttggccgaca ctgattaatc attatcaacc agtacggtta
    15841 gaaaatgatt ttttattttt aagaaaaaaa ttagttaaca aacctgttac atctttagtg
    15901 ccattaaaaa cagaaattca tacttttgga gaacaagtta aaatacctga taccgataaa
    15961 cctctttttg tcgaaataga aattcaacca acgctctggg ggaggttagc gactacattt
    16021 tttaagcctc accagcttga agccaatttg gagttaaaaa atggtaccca aagacaatac
    16081 aggctcattt ccaatatggc aaaatccggt tttctattat cgcctttaat agaaaacagc
    16141 gctgaatttg gattgttatt tagccagaat aattacctgg caggtaaaaa agttatttct
    16201 ttttccatta actcaaagca agtgccttcc tcgcactggc aaacgaaata tactattcat
    16261 tataaaattt ttgccagcaa taattaaaac actatggatg aggcaatcaa aatagtatac
    16321 caagctcttc tttgttagtt tttgtttaaa ttccaaacaa atatcttc
//
LOCUS       DACVWI010000057        16299 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.057, whole genome shotgun sequence.
ACCESSION   DACVWI010000057 DACVWI010000000
VERSION     DACVWI010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16299
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.057"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..572)
                     /locus_tag="JBH85_06810"
     CDS             complement(<1..572)
                     /locus_tag="JBH85_06810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0945910.1"
                     /translation="MFILQGIYMDIKLKIGLRIKESRKNKKFTAVQLAEVTGFSAQRI
                     SNWERGTRTPRFKDAEILGSALGVSPTWLLFLDIDHKPMKDHPFQTIPIINASSKIEG
                     YLPIPSSIQDNITHDDFAFIVHDKSMSPIYNAGDLVTFCKEKQNHCDLVLIHINATEE
                     NLFRKISSEDNTFICSPINPDWPQIRFESAS"
     gene            746..997
                     /locus_tag="JBH85_06815"
     CDS             746..997
                     /locus_tag="JBH85_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010655115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945911.1"
                     /translation="MENNFRLQICKNIINYLLESTNYTLKDIAALLNCSIRQLRSIYF
                     DELMPTNLYCERDLVRLYHLILELNTNKYVHQGYKWGCL"
     gene            982..1284
                     /locus_tag="JBH85_06820"
     CDS             982..1284
                     /locus_tag="JBH85_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0945912.1"
                     /translation="MGLLMNTFNIEEASKFLGAHRETIRRMAASGELPGVKIGRGWRF
                     IEQDLAMYMRNKYSTCDASWGVDIGDNKWHSRKKMGFGGSTSPSVTSVYAEALGLK"
     gene            1197..2201
                     /locus_tag="JBH85_06825"
     CDS             1197..2201
                     /locus_tag="JBH85_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAU0945913.1"
                     /translation="MALTKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHDNFLQDL
                     WSNKHTKLPQQKSWVDAVVRWLEESAHKRSLVTDKFHLAFLDPYLGQKTLDEINAELI
                     EFIAQEKERTNVTPTTVNRMLEIIRAILNKAHKEWQWINTMPLFRMRKVENKRIRWLS
                     RGQANKLIQELPNHLKDMAAFTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKK
                     AIPVPLNSQAIVIIEKQVGLHPTFVFTYFGKPVTRCNNHAWQKALIRAGIKDFRWHDL
                     RHTWASWHVQNGTSLQELQQLGGWSEYEMVLRYAHLSSDHLKVAAERITKNSGTFSSL
                     "
     gene            complement(2266..2342)
                     /locus_tag="JBH85_06830"
     tRNA            complement(2266..2342)
                     /locus_tag="JBH85_06830"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2306..2308),aa:Arg,seq:tcg)
     gene            complement(2405..2480)
                     /locus_tag="JBH85_06835"
     tRNA            complement(2405..2480)
                     /locus_tag="JBH85_06835"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2445..2447),aa:Lys,seq:ttt)
     gene            complement(2567..3445)
                     /locus_tag="JBH85_06840"
     CDS             complement(2567..3445)
                     /locus_tag="JBH85_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945914.1"
                     /translation="MKWQIPAKTFLLGEYAAIAGEPAILLTTSPCFTLTLTENAKLEG
                     IHPESPAGLWWQKNQCHPFGLSWQDPYHGQGGLGASSAQFLACYLATCSLQEITPQLN
                     HMLEAYYQSSWSGLGLRPSGYDVIAQSQQGCVYIDKQKNQVNSFSWPFKDLSFLIIHT
                     GNKLATHHHLQEVTLPSQIDYLASLVIKAKEAFDLARSHHLIQCINLYAQKLTELNLV
                     SQHSLPLIQSIKSYPETLAIKGCGALGADTLLILTDKRDLQSLKDKVQDQNWLILATE
                     DNLTVRNNNSLFEKSI"
     gene            complement(3442..4740)
                     /locus_tag="JBH85_06845"
     CDS             complement(3442..4740)
                     /locus_tag="JBH85_06845"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HAU0945915.1"
                     /translation="MSIAANAGELFRGFSKLSREERFQRLCALGALTHEDITFLKQGG
                     IKDLNLADKLIENVIGYFQLPLGVATNFNIDGRDYVIPLAVEETSIIAALSKSAKWIR
                     QHGEINTWVHGECILGQIQLAKIKDFQRFSDLFNKNRQYFIEIANKDVAANMVKRGGG
                     VTDLQVRHLKRDDGQDMAVIHLTMNSCDAMGANIINQVLEYLKQPIEQITGEEVTMCI
                     LSNLNDQKLTTAQVIIRNIDPILGQKLQEASLFAEIDPYRAATHNKGVMNGIDPVLIA
                     TGNDWRAVEAGIHAYAARSGQYKAITRWRYQNEILTGELTAPIIVGTVGGVTSLHPTA
                     KMCLRMMDITSANQLSQVIAAVGLVQNLGALKALCTDGIIQGHMKLHIDNLLLVAGAN
                     ENEMPVLKEKLQEWLNLNKRVSLNNAYDLLAEIRQAPVAV"
     gene            complement(4731..5759)
                     /locus_tag="JBH85_06850"
     CDS             complement(4731..5759)
                     /locus_tag="JBH85_06850"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HAU0945916.1"
                     /translation="MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPD
                     LDFKDISIQSIRFKKPVEKPFIISSMTAGHSNALEINYRLMEACSKTKWAMGVGSQRR
                     ELTDKQAAFEWTPLRRDFPMVSLFSNLGIAQLIDTPISAIQRLIDTLQAEALIIHCNP
                     LQECIQPEGTTNFQGCWTALEALVKKIASPVIIKETGCGFSKNTLLRLNNIGVAAVEI
                     SGVGGTHWGRIEGHRANKDPIRQRTADTFRNWGIDTLQSTRNAISLNPSFEIWGSGGV
                     RNGLDAAKLFALGATTVGFAKPMLEAALGSTGQVLTQMNTIEYELKTAMFCTGSRVLD
                     DLKEKACP"
     gene            5927..6985
                     /locus_tag="JBH85_06855"
     CDS             5927..6985
                     /locus_tag="JBH85_06855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2050 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945917.1"
                     /translation="MKSKLEYHFSANADGDESCIEDVDGNEFTPNGSPAHGWTAWTRF
                     FGHQNQPPKYVVKQPRPDKVRSSSDLRDKKLNNEWNRARYQHELDIWNLVYPDNKAYL
                     FTDKGIRLVLPYLPGKTLFSFTSREEDQLTWCQLNHAVFCEFKRFTELGLKHCDLKYD
                     NFLIERKQDGTFRAYIIDLDSVGKLKPNDQDYDWNIVLASLFDDTGLKSPDVCPPGYI
                     ALKSIDVPAENENEARSKLDKIKKELSQKKPTLVRVKNCQQNKLDYYFVYGCLYNGQW
                     GFTKLDEKIISSVNLSNFSGALVDCRAASVIGNHIKLKQGHISYRLDLYINCLNEKIA
                     ELTLLKSQNSPKKLYIPF"
     gene            complement(7123..7422)
                     /locus_tag="JBH85_06860"
     CDS             complement(7123..7422)
                     /locus_tag="JBH85_06860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945918.1"
                     /translation="MGRFIFKGTSLIKLMLAFTLLIGALILVTPANAKAVNRDINPII
                     NKSNPTQMAYWVRYRYWGPYYYRGYYYRPYYYRWGYPYYRPYYRPYYRPYYYYRW"
     gene            complement(7549..8400)
                     /locus_tag="JBH85_06865"
     CDS             complement(7549..8400)
                     /locus_tag="JBH85_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945919.1"
                     /translation="MLFYIQVIFMNEKLIETQSNLIKQAETELIQSNQLLESLQQEKG
                     LQEESDLDELDSLKSLILVLQYRLDTQNALSQLGHLQQYLLQLLGVEAKHSFEFNIER
                     LAFALGTDELKQILAMLNHLVDSLLRVIAQKQLKESQDKKKSLQQTKQFKPIDTLVNV
                     LNKQKLFMAKLDELKLALENIGGAPQPGIVYDHIAALQGPISRFYQALQHGLGLSNSL
                     YQQLQKKNQLSYQLPDTLLKPEHVIRNMNFHPESQRLFKTTLERNKIENLEERAAAKR
                     LGHFFNH"
     gene            8494..9618
                     /locus_tag="JBH85_06870"
     CDS             8494..9618
                     /locus_tag="JBH85_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HAU0945920.1"
                     /translation="MEQTSAQIVFEQKNATYQCCGSWSVLTLDGLPKKFSTSPLPDSQ
                     QITINGEKISAFDSAGALALKKCIDELKKRNNQIELVNFSDSQQQMLELIESKQDILS
                     YQLPAVSKEGVLYQIGKESENKLHQVDGLIILIGDLSTRLFEAFAYWRRFHLPSIVSV
                     IDSAGLKALPIIGLLSFLIGVVLAYQMGLQLETYGANIFIAYLSGMAIFREFGPLITA
                     IIVAGRTSSSFTAQIGSMKINEEVDAILTMGLSPTELLVLPKVLGLLIVFPLLIFWAD
                     VFSIWGAMIMSKNMLNIGFEDFLSRLRDSVGLNQMMLGLYKAPAFSILIALVGCFQGF
                     RVESSADSIGSQTTKSVVQALFLIIIADAAFSIAYSWMGL"
     gene            9619..10356
                     /locus_tag="JBH85_06875"
     CDS             9619..10356
                     /locus_tag="JBH85_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAU0945921.1"
                     /translation="MSEPVIEIKGMKNCLGGQWVHTDVNLTVERGEILAIIGGSGSGK
                     TTILRSLLMLLKPSAGSIKVFGEEIYNLDTEQAFRLRRRWGMLFQHSALFSAMTVLEN
                     VMFPMREFTTLDQDFMKELALLKITLVGLSKEAAVKYPSELSGGMQRRAAAARAIAMD
                     PELLFLDEPTTGLDPRGARLFDDLVVFLRDALNLTIVMVSHDIESLKRTTDRVAFVGD
                     GKILSVEPINELMKNKNPLIAEYFSKF"
     gene            10386..11309
                     /locus_tag="JBH85_06880"
     CDS             10386..11309
                     /locus_tag="JBH85_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HAU0945922.1"
                     /translation="MESKTNYTIVGLIVLILTAGLLSAGLWLSVGFNQKEYTSYTVYL
                     KESVSGLSVESPVKFNGVQVGYVKEIKLNKNDPRQVELLLNIEKSTPITTSTSATLIT
                     QGITGVTYVGLSAGSSELTPLRKMPGEPYPVIPSKPSLLNQLDAVLKEVAENVGAVSE
                     KAQLIFNEENADNVRKSLANIERITEIIADKGQTIDSSLNNLDVFVANMANASKQFPQ
                     LIKDLKTGISKFKSLADNMSAAGKDVSKTMIAGKNTIDQISQQAIPPAVILLRRLNAI
                     SANLEKVSNEMRQNPSVIIRGTKAPKLGPGE"
     gene            11313..11915
                     /locus_tag="JBH85_06885"
     CDS             11313..11915
                     /locus_tag="JBH85_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945923.1"
                     /translation="MRVLSSVCFILGILTLMSCSPVKVPVTNEYQLTAYSTKQLTRKP
                     RPITIQVTVPEAVAGYQTEEMLYMKKPFKLEPFVKNAWTSPPADMLFPLLVQSLQSSG
                     YFYAVTSSPYSEEADYRLDTQLLKLEQNFIKKPSVLEFSAKIVLTHISDNQIIGSRIV
                     SLQIPCSQDTPYGGVIAANQATFRFTATATDFVVSHIKRD"
     gene            12013..12543
                     /gene="pal"
                     /locus_tag="JBH85_06890"
     CDS             12013..12543
                     /gene="pal"
                     /locus_tag="JBH85_06890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HAU0945924.1"
                     /translation="MKAGSFYKLGLLVASAVLVAACSKTPGSADGGAAVGDGDATAQG
                     LGQMTHFAGQEPGESYTTQAPHNQLYLFAYDDSTLASKYLPSVNAQAEYLKTHPGARV
                     MIAGHTDERGSREYNVALGERRADTVAEILRMAGVSRQQIRVVSYGKERPANYGHDEA
                     SHAQNRRVEFIYEATR"
     gene            12540..13508
                     /gene="ybgF"
                     /locus_tag="JBH85_06895"
     CDS             12540..13508
                     /gene="ybgF"
                     /locus_tag="JBH85_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system protein YbgF"
                     /protein_id="HAU0945925.1"
                     /translation="MINCKKSIITLCFVLMLPFASWAEAPVIDDSENFAMIDRQEEYE
                     APLVNPKYDNPQIENAELDGSQNDNYSTDTSQSYDEPALVKEDRSTISDNAKLIDKIQ
                     QLQKEIQELRGQLEVQAHDLKLLQQQQVAFYKDLDSRLSNSSTSAKTVQNDKPATDIS
                     LGSNSPETLKVASPQIKAGSSNGKPQPVVAVSRANPADEQISYLAAYELVKNKRYDEA
                     IKSMQTFVQKYPRGGYTANAEYWLGELYLVKKDYSKAIEHFEIVLQQYPSSSKAAASL
                     LKSGYAYAEKGDKQEAKKRFQQVVKTYPDTPTAQLASSKLEAINAL"
     gene            13505..14158
                     /gene="queE"
                     /locus_tag="JBH85_06900"
     CDS             13505..14158
                     /gene="queE"
                     /locus_tag="JBH85_06900"
                     /EC_number="4.3.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HAU0945926.1"
                     /translation="MKRFNEQLRITEIFHSLQGESVTVGLPTVFVRLTGCPLRCQYCD
                     TAYAFSGGEVVEIDDILNKVASYQCQHVCVTGGEPLAQPGCILLLSKLCDAGYSVSLE
                     TSGARDIASVDQRVMIVMDLKTPDSREADKNLLSNLSFLKPTDQIKFVLCSRTDYEWA
                     CSMLSEYQLAERVQLLFSPSWNQLNPTNLANWIIQDKLPVRFQLQLHKILWNDAPGH"
     gene            14155..15123
                     /locus_tag="JBH85_06905"
     CDS             14155..15123
                     /locus_tag="JBH85_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HAU0945927.1"
                     /translation="MTSRRLTMHWFAQAPANIALIKYMGKKDENSNLPDNSSLSYTLS
                     NLLSSVKLEKLPTKKDIWEPLTIPGAPEFNLSVEAQKRFIDHLVRLKEYFGYVGGFLI
                     QSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSCRS
                     FYAPWALWTGDKVSAIDLPYKDLLHQVIVISSQEKEIPSRVAHKLVKTSPFYETRSER
                     AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEK
                     FWNEKGDGPVVTMDAGPNVHLLYRSDQTDLARQFKSDHLVGNYDVL"
     gene            15110..15991
                     /locus_tag="JBH85_06910"
     CDS             15110..15991
                     /locus_tag="JBH85_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HAU0945928.1"
                     /translation="MMFYDFETTTFGKWILAGEHAVVRGHEALVFPIKERQLTLKYNP
                     SSPSLSAEFQGINGSDMHLLFWSVLERGMHLLGRSLNELGGHFYLETNIPVGVGMGAS
                     AALCVAMSRWYCAQQMIQDNQCNEFAKQLEHLFHGKSSGLDVAGVASDTGVYFKSGLC
                     TPVKQTIYPYWYLSSCNQIGITSHCIQQVEYLWNKNPELAHQVDKQMVEAVQEAKAVL
                     EEGGSNALNRLAKAINKAADCFLQWGLVSEGLQQHMNHLFADGAIAVKPTGSGGGGFV
                     LSLWDKIPSSHTELIPV"
     gene            complement(16004..16273)
                     /gene="ftsB"
                     /locus_tag="JBH85_06915"
     CDS             complement(16004..16273)
                     /gene="ftsB"
                     /locus_tag="JBH85_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HAU0945929.1"
                     /translation="MRPIFIILIVALVALQHKLWLGDGNIIQWIKLEKKLEAHKSQND
                     KLAARNKALEADIKELKSGDQALEEQARYELGMIKQNEVYYQFVD"
BASE COUNT         4926 a         2958 c         3371 g         5044 t
ORIGIN      
        1 gatgctgatt caaatcgaat ttgtggccag tccggattga taggtgagca tataaacgta
       61 ttgtcttctg agcttatttt tctaaataag ttctcttctg tagcgttaat atgaatcagt
      121 actaaatcgc agtggttctg tttttcttta cagaaagtaa ctaggtcacc tgcattataa
      181 ataggagaca tacttttatc gtgcacaata aaagcaaaat catcatgcgt tatgttgtct
      241 tgaattgatg aaggtattgg gaggtaacct tcaattttag atgaggcatt gattataggg
      301 atcgtttgga agggatgatc cttcataggt ttgtggtcaa tatctaaaaa taataaccat
      361 gttggagaaa cacccaatgc actaccgagt atttctgcat ctttaaacct gggcgttctt
      421 gttcctcgtt cccaattact aattcgttgc gctgaaaaac cagtgacttc agccaactgc
      481 actgcagtga attttttgtt ttttcgcgac tctttaattc ttaaccctat ttttaatttt
      541 atatccatat aaataccttg caaaataaac ataattgttt attataaacg ttatcgttta
      601 tatttgtgtg tattgtttac ctagcgttta ttatacacat aagttgaatg aacagtaaca
      661 aataaacaaa ccgatttaga taaaaaaata tgtttaggcg ttttctgtag ctatctacag
      721 aataagttga aaaggagtat tcgttgtgga aaataacttt aggctacaaa tctgtaagaa
      781 catcattaat tatctattag agtcaactaa ctatactcta aaagacattg ctgctttact
      841 aaattgctca ataagacaat tacgttctat ttatttcgat gagttaatgc caactaatct
      901 atattgcgaa cgggatcttg tgaggcttta tcatttaatt cttgaactca atactaataa
      961 atatgtgcac cagggttata aatggggttg cttatgaata cttttaatat tgaagaggct
     1021 tcaaagtttc taggcgccca cagggaaact atccgacgaa tggctgcatc aggtgaacta
     1081 cctggagtaa agatagggcg aggttggcgt tttatagaac aagatcttgc gatgtatatg
     1141 cgaaacaagt actctacttg cgatgcatcg tggggtgtcg atataggaga taataaatgg
     1201 cactcacgaa aaaaaatggg ttttggtgga tcgacgtcac cttcggtgac aagcgtatac
     1261 gcagaagcac taggactaaa gtaaaacaac aagcgcaaca attccatgat aattttctac
     1321 aagatctatg gagtaacaag cataccaaat taccccaaca gaaatcgtgg gtagatgctg
     1381 ttgtgcgatg gttagaggaa tcagcgcata aacgaagttt agttacggat aaatttcatt
     1441 tggcctttct ggacccttat cttggccaga aaacgttaga tgaaattaac gccgaattaa
     1501 ttgaatttat tgcgcaagaa aaagagcgga ctaatgttac tccaacgacg gtcaaccgaa
     1561 tgttggaaat tatacgtgct attttaaaca aagctcataa ggaatggcag tggataaaca
     1621 ccatgccatt attcagaatg agaaaagttg aaaataaacg tatacgttgg ttgagtaggg
     1681 gacaggctaa taaattgatt caggagctac caaatcattt gaaagatatg gcagctttta
     1741 ctttggcaac tggtttacgc caatctaatg ttactcaatt gcagtggagt gaagtggatt
     1801 taattagaaa acatgcactc attcaccctg atcaatctaa aacaaagaag gctatccctg
     1861 ttcctttaaa ctctcaggca attgtcatta tagaaaaaca agtgggctta catcccacat
     1921 ttgtatttac ctattttggt aagcctgtta cgcgatgtaa taatcatgct tggcaaaaag
     1981 cgttgattcg ggcaggaatc aaagattttc gctggcatga cttgcgtcac acttgggcaa
     2041 gttggcatgt gcaaaatggt acctcattgc aagaattaca gcaattaggt ggatggtcag
     2101 aatatgaaat ggtgttacgt tacgcgcatc tttcaagtga ccatttaaag gtggcagcgg
     2161 aaagaattac aaaaaattct ggcacgtttt cgtcactgta acttggtttt tacggcacgt
     2221 ttcgatccag gcaaccgtta actacctgat tttaaagggt ttaaatggtg cgctcggagg
     2281 gactcgaacc cccgacacct tggttcgaag ccaagtactc tatccagctg agctacgagc
     2341 gcaatggggt gtggatgaac attttatata tttctggtct gtttatgcag gagggagacc
     2401 agaatggtgg gccgtatagg attcgaacct atgacacaga ggttaaaagc ctcctgctct
     2461 accacctgag ctaacggccc taaagaggct gaaatcatac cggattagag cagaatttca
     2521 agtcttttta gagattattt tttgtttaac aaacaagatg tgttatttat atgctttttt
     2581 caaacaagga attattattc ctgacagtta gattatcttc tgtagctaaa attaaccagt
     2641 tttgatcttg aactttatct ttgagagatt gtaagtctct tttatcggta agaattaaca
     2701 aagtatcagc tcctaaagca ccacagcctt ttattgccaa ggtttccgga taagatttta
     2761 tagactgaat aagaggcaga ctatgttgac tcaccagatt taattccgtc aatttttgag
     2821 catataagtt aatacattgg attaaatggt ggctacgagc caaatcaaaa gcttcttttg
     2881 ctttgataac caaagaggcg aggtaatcta tttgagatgg tagggtgact tcttgaagat
     2941 gatgatgtgt cgccaatttg ttgccggtgt gaatgatcaa gaaggataaa tctttgaatg
     3001 gccaggagaa cgaattaacc tgattttttt gtttatcaat gtaaacacaa ccttgctgtg
     3061 actgagcaat cacatcataa ccactgggtc ttaaccccaa ccccgaccag gacgattggt
     3121 aataggcctc aagcatatgg tttaattgag gggtaatctc ttgcagtgaa caagttgcca
     3181 aataacaggc taaaaattgc gcgctggatg cgcccaggcc gccttggcca tgataagggt
     3241 cttgccagga taggccaaag ggatggcatt gatttttttg ccaccataat cctgcaggtg
     3301 actccggatg aattccttct aattttgcat tttcagttaa tgtaagagta aagcaagggc
     3361 ttgtcgttaa taggatagct ggttctcccg caatggcagc gtattctcct agtaaaaatg
     3421 ttttagcggg aatttgccat ttcatactgc aacaggagct tgtcggattt cagctaatag
     3481 gtcataagcg ttattcaagc tgactcgttt gttcaggtta agccattctt gcaatttttc
     3541 tttgagcacg ggcatttcat tttcattagc ccctgcaact aatagcaaat tatcaatatg
     3601 caatttcata tggccttgaa tgatcccgtc agtgcataaa gctttgagtg cgccaagatt
     3661 ttgcactagt ccaactgctg cgatgacttg ggagagttga ttggcagaag tgatatccat
     3721 cattcgtaaa cacattttag ccgtggggtg taaagaggtt acgcctccaa cagtacctac
     3781 tatgatagga gcagttaact ctcctgtgag tatttcattt tgataccgcc agcgagtaat
     3841 tgctttgtat tgtcccgaac gtgccgcata ggcgtgtatt ccagcttcca cagctcgcca
     3901 atcattccct gtagcaatta aaaccggatc aattccattc ataacccctt tattatgggt
     3961 agcagcgcga tagggatcta tttctgcaaa gagtgaggcc tcttgcaatt tttgaccgag
     4021 gatggggtca atattacgaa tgatgacttg agcggtcgtt aatttttgat catttaagtt
     4081 cgataaaata cacatggtga cttcttcacc agttatttgt tctatgggtt gttttaaata
     4141 ttcaagtact tgattgatga tattggcacc catagcatcg cagctgttca tcgtcaaatg
     4201 aattactgcc atatcttgtc catcgtctct ctttaaatga cgtacttgca aatccgtaac
     4261 accgccgcct cgtttgacca tattggcggc aacgtcttta ttcgctattt ctataaaata
     4321 ttgacgattt ttattaaaga ggtcagagaa tctttgaaag tcctttattt ttgccagttg
     4381 aatttgccca agaatacatt ctccgtgaac ccaggtattg atttcaccat gctgcctaat
     4441 ccatttcgct gatttggaaa gagcagcaat aatagaggtt tcttccactg ccaaaggtat
     4501 tacataatca cgtccatcaa tattaaaatt agtagccaca cccaatggaa gctgaaaata
     4561 tccaatcaca ttttcaatca atttgtcggc caagtttaaa tctttaatac caccttgttt
     4621 aagaaatgtt atgtcttcat gagtcaaggc acctaaagcg cataaccttt gaaagcgctc
     4681 ttcacgtgat aactttgaga atccgcgaaa taattcaccg gcattagcag ctatggacat
     4741 gccttctcct ttaaatcatc aagaactcgg ctgccagtac aaaacatagc agttttcaat
     4801 tcatattcaa ttgtattcat ttgggtcagt acttgcccgg ttgagcccaa agccgcttca
     4861 agcatgggtt tcgcgaagcc gactgtggta gcaccgagcg caaacagttt tgcagcatcc
     4921 aaaccatttc ttacgccgcc agaaccccaa atttcgaaag agggattaag gctaatggcg
     4981 ttacgagtgc tttgtaaagt atcaatgccc caatttcgaa aagtatcagc agttcgttgt
     5041 cttatcggat ccttgtttgc ccgatgtcct tcaattcgcc cccaatgcgt accccccaca
     5101 ccactgattt caacagcggc aacacctata ttatttaacc ggagcagcgt attttttgaa
     5161 aaaccacaac cagtttcttt tattataact ggagaagcaa tctttttgac taacgcttcc
     5221 aatgctgtcc agcacccttg aaaattagtt gtcccttcag gttgaataca ctcttgtaat
     5281 ggattgcaat gaataatcaa tgcttcagct tgcaatgtat caattaagcg ctggattgca
     5341 gaaattggag tgtcaattaa ctgagcgatt cccagattac tgaacaggct gaccatgggg
     5401 aaatcacgac ggagtggcgt ccactcaaat gcggcttgtt tatcggttaa ttctctgcgt
     5461 tgtgagccaa cgcccattgc ccattttgtt tttgagcacg cttccattaa tcgatagtta
     5521 atttctagag cattggaatg gcctgctgtc attgaactga taataaatgg tttttcaacc
     5581 ggttttttaa accggatgct ttgtatggaa atgtctttaa aatcaaggtc aggtaaggct
     5641 tcatgcacca aagaaaaatg atcaaaggga tttaattcgc tgctttgatt ggctggcatt
     5701 aaggccagtt ctatgtgatc gcgcttacgc tgttcaaatt ggctgtattc gttttgcatg
     5761 cctgaattta cttttgaaaa atagcgtcaa ttttagcata aaatcatgaa atagaccatt
     5821 gcatttctat tcaacacagt gatttatttg gtatcattaa tttaaccatg agttaactat
     5881 ttttttcgtt tagctagctt cttggtaaca aattaaggta attatcatga aatccaaact
     5941 tgaataccat ttctctgcaa acgcggatgg cgatgaatcc tgtattgaag atgttgatgg
     6001 aaatgaattt actccaaatg gttcaccagc acatggatgg actgcgtgga ctagattttt
     6061 tggccatcaa aaccagcctc ctaaatatgt tgttaaacaa cctagaccag ataaagtccg
     6121 ttcctcttca gatcttagag ataaaaagct taataatgaa tggaacagag cacgctatca
     6181 gcatgaactg gatatatgga atttggttta tccagataat aaagcctatt tgtttacaga
     6241 taaaggaatt cgattggttc tcccttattt acccggtaaa acgctatttt cttttactag
     6301 tagggaagaa gatcagttaa cctggtgtca actaaaccat gcagtatttt gtgagtttaa
     6361 gcgctttact gagcttggat tgaagcactg cgatttaaaa tatgacaatt ttttgataga
     6421 aagaaagcaa gatggtacct ttagagccta cataattgat ctcgattcag tgggtaaact
     6481 aaagcctaat gatcaggatt atgattggaa tattgtcctg gcatctctat tcgacgatac
     6541 cggactaaaa agtccggatg tttgcccacc cggctatatt gctttgaaat caatcgatgt
     6601 tccagcagaa aatgagaatg aagcacgatc aaaacttgat aaaataaaaa aagaactatc
     6661 gcaaaaaaaa cctaccttgg taagagtcaa gaattgccag caaaataagt tggattatta
     6721 ttttgtttat ggatgtttgt ataatgggca atggggcttt actaaacttg atgagaagat
     6781 cattagttca gttaatctat ctaatttttc tggtgcttta gttgattgta gagctgcttc
     6841 tgttattggt aatcatatta aattaaaaca aggccacatt agttacagac ttgatcttta
     6901 tatcaattgt ctgaatgaga aaatagctga actcactcta ctcaaatctc aaaactcacc
     6961 taaaaagctg tatatcccat tttaaaccag aacctgtttc taccatgaag ggatcaaagc
     7021 gtgctgctgt gttataagta taatatcctc ttcttggcaa agccttctta ggctatatca
     7081 ccatagctat attctataca taggccagca gcgtcttatc gcctaccagc gataatagta
     7141 ataaggtctg tagtagggcc tgtagtaagg tctgtaatat ggataacccc agcgatagta
     7201 atacggtcta tagtagtatc cgcgatagta atatgggccc caatatctat agcgtaccca
     7261 gtaagccatt tgagtcggat tggatttatt aattatcgga ttgatatctc tgttaactgc
     7321 tttggcattt gcaggcgtta ctaaaatcaa agctccaatc agaagggtaa aagctagcat
     7381 cagttttatt aaagaggtcc ctttaaagat aaaacgtccc attttttact ccttaaagcg
     7441 tattttattt aagtatagac tacacgggat tatttgatta aattttgtac acaatcatta
     7501 ctgggcatga gtttaaattt tattgaggca gtaagtggtt tattagggtt aatgattaaa
     7561 aaaatgcccg agccttttgg ccgcagctcg ttcttcaagg ttctcgatct tattgcgttc
     7621 caaggttgtt ttgaatagtc gctgcgattc gggatgaaag ttcatattac gaataacgtg
     7681 ttctggttta agcaaggtat caggtaattg ataactcaat tgattttttt tctgtaactg
     7741 ttgataaaga gagttactta agcctaaacc atgttgtagt gcctggtaga aacgggatat
     7801 gggcccttgt aacgcagcaa tatggtcata aactatgcct ggttgtggag ctccgccaat
     7861 gttttcaaga gccagcttta attcatcaag ttttgccata aataattttt gtttattcaa
     7921 aacattaacc agggtatcta tcggtttgaa ttgcttggtt tgttgaagtg atttcttttt
     7981 gtcctgagac tctttaagtt gcttttgggc aataacacgt aacaacgaat ctaccaaatg
     8041 attaagcata gccagaattt gttttaattc atctgttccc agagcaaagg ccaatcgctc
     8101 aatattgaat tcaaaagaat gtttggcttc tacccccaat aactgaagca ggtattgttg
     8161 taaatgacct aactggctta aggcattttg tgtatccagt ctgtattgca aaaccagaat
     8221 aagggatttg agtgagtcca attcatccaa gtcggattct tcctgtagtc ctttttcttg
     8281 ttgtaaagac tccagcagct ggttagattg aatgagttct gtttccgcct gtttgatgag
     8341 gttagattgg gtttcaatta acttttcatt catgaagata acctggatat aaaagagcac
     8401 tatctatatt attatgatac catgaatcgt aagtttttgc ggtcttgtgg tattttgtat
     8461 tattctagga aaattcaata aaaagaaata aatatggaac agactagcgc acagattgtt
     8521 ttcgaacaaa agaatgcaac ataccagtgt tgtggttcct ggtctgtttt aacccttgat
     8581 ggattaccta aaaaatttag tacaagccca ttacctgatt cacaacaaat aaccataaac
     8641 ggtgaaaaaa tcagtgcttt tgatagtgct ggagctctgg cattaaagaa atgcatagat
     8701 gagcttaaaa aaagaaataa ccagattgaa ttagtcaatt tttctgatag ccaacagcaa
     8761 atgctggagc tcatagagtc caaacaagat attctttcct atcaattacc tgctgtttcc
     8821 aaagaaggtg ttctttatca gattggtaaa gagtcagaaa ataaattgca tcaggttgat
     8881 ggtttgatta ttttgatagg agatttaagc acaaggcttt tcgaagcgtt tgcatattgg
     8941 cggcgatttc atttgcccag cattgtttct gttatagatt ctgccgggct aaaagcgtta
     9001 cccatcattg gcttattgtc ttttttgata ggggtcgttt tagcttatca aatgggtttg
     9061 caattagaaa cttatggtgc caatattttt attgcctatt tatctggcat ggcaattttt
     9121 cgggaatttg gacctttaat tacagcaatc attgtagcgg ggcgcaccag ctcatcattc
     9181 acagctcaaa ttggcagcat gaagattaat gaagaggtag atgccatctt gaccatgggg
     9241 ctttctccca ctgaattatt agttttaccc aaagtcttgg gtttattaat agtgtttcct
     9301 ttattaattt tttgggcaga tgtctttagc atttgggggg caatgatcat gtccaaaaat
     9361 atgttaaaca tcggttttga agatttttta agccgcttaa gagattccgt aggacttaac
     9421 caaatgatgc tgggtttgta taaagctcct gccttctcaa tattaattgc tttagtgggg
     9481 tgttttcagg ggtttagagt agaatcaagt gctgatagta taggaagcca aacaaccaaa
     9541 agtgttgtgc aagctttatt cttaattatt attgctgacg ctgctttctc catagcgtat
     9601 agctggatgg gtttataaat gagtgaacca gtcattgaaa tcaagggaat gaaaaattgt
     9661 cttggcggtc aatgggtgca caccgatgtt aatctcaccg tagaaagggg agaaatcctg
     9721 gctattatag ggggctctgg aagtggcaaa accaccatat tacgcagttt gctgatgtta
     9781 ttgaaacctt ctgcgggtag tattaaagta ttcggtgaag aaatttataa tcttgatacg
     9841 gagcaagctt tcaggcttag gcgtcgatgg ggcatgttat ttcagcacag tgctttattt
     9901 tcagctatga ccgttctgga gaatgtgatg ttcccaatga gggaattcac tactttagat
     9961 caggatttta tgaaagaact ggcactttta aaaataactt tggtaggctt atctaaagaa
    10021 gcagctgtga aatatccttc cgagttaagt gggggaatgc aaagaagagc tgccgcggca
    10081 agggcaattg caatggatcc agagctatta tttctggacg aacctacaac aggattggat
    10141 cccaggggag ccaggctttt tgatgatttg gttgtttttt taagagatgc gttaaattta
    10201 accatagtca tggttagtca tgatatagag tctttaaaaa ggacaacaga tcgtgttgca
    10261 tttgtaggtg atgggaaaat tcttagtgtt gaacccatta atgaattgat gaaaaataaa
    10321 aacccgctaa tcgctgaata ctttagcaaa ttctaagaaa cactataaca gaggggacaa
    10381 cttacttgga atctaaaacc aactacacca tagtaggcct catcgtactt attctgacag
    10441 ctggcctatt gtctgcgggt ttatggctct cggtcgggtt taaccagaaa gagtatactt
    10501 cttatactgt ttatctcaag gagtctgttt ctggtctcag tgtcgaatcg cctgttaaat
    10561 tcaatggtgt gcaggttggt tatgtcaagg aaattaaatt aaataaaaat gatcccaggc
    10621 aagtggaatt attgttaaat atcgaaaaga gtacgccaat aacaaccagt acttccgcaa
    10681 ccttaattac acagggtatt acaggagtta cttatgttgg gttatctgct ggatcttccg
    10741 agctgactcc tttacgaaaa atgccggggg agccctatcc tgtaattcct tccaaaccat
    10801 ctcttctgaa tcagttggat gctgttttaa aggaggttgc tgagaatgta ggtgcggtga
    10861 gtgaaaaggc tcaacttatc tttaatgaag aaaacgctga taatgtaaga aaatcattgg
    10921 ctaatataga gcgtattaca gaaataatcg ctgataaagg tcaaacaatt gatagttctt
    10981 taaataatct tgacgtgttt gtagccaata tggcgaatgc aagcaaacaa tttcctcagt
    11041 tgataaaaga tttaaaaaca ggtatttcaa aattcaaatc tttagctgac aatatgagtg
    11101 ctgcgggtaa ggatgtttca aaaacgatga tagcgggcaa gaatactatc gatcaaattt
    11161 cccaacaggc tatacctcca gcagtcattt tattgcgacg cttgaatgcc atttcagcga
    11221 accttgaaaa agtcagcaat gaaatgaggc aaaacccttc tgtgattatt cgaggtacga
    11281 aagcacctaa acttgggcca ggggaataaa atatgagagt tctcagtagt gtttgtttta
    11341 tacttggaat attaacactg atgagttgtt cacctgttaa agtcccagtg accaacgaat
    11401 atcaattaac agcatacagt accaaacaat tgaccaggaa gcccaggccc ataacaatac
    11461 aagttacagt ccctgaagcg gtagcaggat atcagaccga agaaatgctt tacatgaaga
    11521 aaccgtttaa attggaacca tttgtaaaaa acgcctggac ctcacctccc gcggatatgc
    11581 tctttccttt attagtacaa agcttgcaga gttcagggta tttttatgcc gttacatcaa
    11641 gtccgtatag tgaagaagca gattatcgat tggatactca actattgaaa ttagagcaaa
    11701 attttatcaa gaaacctagt gttcttgaat tttcagcaaa aatagtacta acccatatta
    11761 gtgataatca aattataggc tcgcgaattg ttagtttaca aataccttgt tcacaagata
    11821 ctccttatgg cggagttatt gcggcgaatc aggctacgtt tcgatttact gcaacggcaa
    11881 cagactttgt tgtatcgcat attaaacgtg attaggaata gccaaaaaat aaaaagaatt
    11941 gtacaatggc tctccatgat tatcatgtgt agtttctaaa aaataataag aagagtttaa
    12001 ggagattgtg gaatgaaagc cggatcgttt tataaactgg gactgcttgt agcaagcgct
    12061 gtattggttg cagcctgttc taaaacccca ggcagtgcgg atggtggggc tgcggtaggt
    12121 gatggtgatg ctactgccca aggtttgggg caaatgactc actttgctgg acaagagcct
    12181 ggtgagtcct atacaacgca ggcaccgcat aatcaattgt atttgtttgc gtatgatgac
    12241 agcactttgg catcaaaata tttaccttct gttaacgcgc aggcagaata tttaaagact
    12301 cacccaggtg ctcgagtgat gatagctgga catactgatg agcgtggtag ccgtgaatat
    12361 aacgttgctc ttggtgaacg ccgtgctgat actgtagctg aaattctgcg tatggcaggt
    12421 gttagcagac aacaaattcg agtagttagc tacggcaaag agcgcccggc taattatggt
    12481 catgatgaag cgtcgcatgc gcagaatcga cgcgtagagt ttatttatga ggcaacaaga
    12541 tgattaattg caaaaaatcc attatcaccc tatgttttgt actgatgctt cctttcgcct
    12601 catgggcaga agcgccagta atagatgata gtgaaaattt tgcaatgatt gacagacaag
    12661 aggagtatga agctcctctt gtcaatccca agtacgataa tcctcaaatt gagaatgctg
    12721 agttggatgg gtctcaaaat gataactact caaccgatac ctctcaatcc tatgatgaac
    12781 ccgcacttgt caaagaagac cgaagtacta tcagtgacaa tgcaaagtta attgataaaa
    12841 ttcagcagct tcaaaaggaa atacaagagt tacgtggcca gcttgaagta caggcacacg
    12901 atttgaaatt attacagcag cagcaagtcg ctttctacaa ggatctggat tctcgattat
    12961 ccaattcttc aacttcagca aaaactgttc aaaatgataa accagcaaca gatatttcat
    13021 tgggatctaa ttcgccagag actttaaaag tggcttctcc tcaaatcaaa gcaggatcat
    13081 ctaatggtaa acctcagcct gttgtcgctg tttccagggc taatcctgct gatgaacaga
    13141 taagctacct ggctgcatac gagttagtta aaaataaacg ctatgatgaa gcgattaagt
    13201 ctatgcagac ttttgtgcaa aaatatccca gaggtggtta caccgcgaat gcagagtact
    13261 ggctaggtga attatatctt gttaaaaaag actattctaa agcaatagaa catttcgaga
    13321 ttgttttaca gcaatatcct tcatccagca aggctgcagc cagtttgtta aaatctggtt
    13381 atgcttatgc cgagaaaggt gacaagcaag aagctaaaaa gcgttttcaa caagttgtta
    13441 aaacatatcc tgatacacca acagcgcaac tggccagctc taaattggaa gcaattaatg
    13501 ctttatgaaa cgatttaatg aacaattaag aattacggag atttttcatt cattgcaagg
    13561 agaatcagta actgtaggtt tgcctactgt atttgttcgc ctgacaggct gcccattgcg
    13621 atgtcagtat tgtgatacgg cttatgcttt ttcaggtggt gaagttgttg aaatagatga
    13681 tattttgaat aaagtagctt catatcaatg tcagcatgtt tgtgttactg gtggagaacc
    13741 acttgctcaa cctggctgta ttcttttatt aagcaaactt tgtgatgcag ggtactctgt
    13801 ctctttggaa accagtggcg ccagagatat agcctctgta gatcaacgag ttatgatcgt
    13861 tatggactta aaaactcctg attccaggga agcagataaa aacttgctgt ccaatttgag
    13921 ttttctgaag cccactgatc agattaagtt tgtgctatgc agccgaactg attatgaatg
    13981 ggcatgtagt atgctgagtg aatatcagtt ggctgaacgg gtacaactct tattttctcc
    14041 gagttggaat cagctaaatc ctactaatct tgcaaattgg ataattcagg ataaattacc
    14101 agttcgtttt caactacaat tacataaaat tttatggaat gatgcacctg gtcattgacc
    14161 tcaaggagac taactatgca ttggtttgct caggcaccag ctaatattgc tttgatcaaa
    14221 tatatgggta aaaaggatga aaattccaat ttacctgata attcttctct atcttacacc
    14281 ttgagtaatt tattaagttc cgtgaaatta gagaagttgc cgactaaaaa agacatttgg
    14341 gagccactta ctattcctgg agcaccagaa tttaacctgt cagttgaagc gcaaaaacgg
    14401 tttattgatc atttagtacg attgaaagag tattttggat atgtcggtgg gtttttaatt
    14461 caatccagta ataatttccc tcatagcagt ggtttagcga gttctgcctc cagctttgct
    14521 gccttgacaa agtgtgcatc aattgcatta agtgaactca ctcaaaaacc tttgccttct
    14581 attgatgagc aagcacaatt gagtcgatta ggttcaggct catcatgccg ttctttttat
    14641 gcaccatggg cgttatggac gggcgataaa gtctctgcaa tcgatttgcc ttataaagat
    14701 ctattacacc aagtcatagt aattagcagt caggaaaaag aaataccatc aagggtagcg
    14761 cataagctgg ttaaaacaag tcctttttat gaaacgcgaa gcgaaagggc agaggcaaat
    14821 ttgaagttgt tactgaacgc ttttgaaaac aaagattgga cgagtatata ccaaatttgc
    14881 tggcatgaat ttcttgacat gcatcaatta tttaaaacct gtgaaaaacc attttcttac
    14941 attacagata atactttgca tatattgagc gttattgaaa aattttggaa cgagaaaggt
    15001 gatggccccg tagttactat ggatgctggt cccaatgttc atttgcttta tagatcagat
    15061 caaacagatc tcgcacgaca atttaaatcg gatcatttgg taggaaacta tgatgtttta
    15121 tgattttgaa accaccactt ttggcaagtg gattttagca ggtgaacacg cggtagtaag
    15181 gggacatgaa gctttagtat ttcctatcaa ggaaaggcaa ttaactttga aatataaccc
    15241 ttcctcaccg tccttgagcg cagaatttca aggcattaat ggttctgata tgcatttatt
    15301 attttggagc gtattagagc gcggcatgca cttgttggga cgttcactga atgaattagg
    15361 aggtcacttt tatttggaaa ccaatattcc tgttggggtt ggcatgggtg cttcggcagc
    15421 gctttgtgtt gccatgagtc ggtggtactg tgcgcagcaa atgatacaag ataatcaatg
    15481 caatgaattt gccaaacaat tagaacatct gtttcatggt aaaagtagtg gcttggatgt
    15541 agctggtgta gcgtcagata ctggtgtata ttttaaatcc gggctttgta ccccagtaaa
    15601 gcaaaccatt tatccctatt ggtatttatc ctcctgcaat caaatcggca ttacttctca
    15661 ttgtatacag caagttgaat atttatggaa taaaaatcca gaacttgctc accaagtaga
    15721 taagcaaatg gtagaggctg ttcaggaagc aaaagctgtt ttggaagaag gggggagtaa
    15781 tgctttaaac cgtttggcaa aagcgataaa taaagccgca gattgttttt tacaatgggg
    15841 tttggttagt gagggcttgc aacaacatat gaatcatttg tttgctgatg gtgcaattgc
    15901 agttaagcca accggttcag gtggtggagg gtttgtatta agcctttggg ataaaattcc
    15961 ctcatcccat acagagttga ttccggtcta gctcctttca agcctaatcg acaaattgat
    16021 aatatacttc attttgctta atcatgccga gttcatatcg agcttgttct tcaagagcct
    16081 gatcaccact ttttaactct ttgatatctg cttccaacgc tttatttctg gcagctaatt
    16141 tatcgttttg acttttatga gcctccaatt ttttttcgag tttaatccat tggatgatat
    16201 ttccatcacc tagccatagc ttatgttgta aagcaactaa agcaacaatt aagataatga
    16261 atatggggcg catagagttt tctattgaag aatgtatct
//
LOCUS       DACVWI010000058        16260 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.058, whole genome shotgun sequence.
ACCESSION   DACVWI010000058 DACVWI010000000
VERSION     DACVWI010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16260
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.058"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1170
                     /gene="tuf"
                     /locus_tag="JBH85_06920"
     CDS             <1..1170
                     /gene="tuf"
                     /locus_tag="JBH85_06920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAU0945930.1"
                     /translation="RKKPHVNVGTIGHVDHGKTTLTAAITTIMAKKYGGTAKAYDQID
                     AAPEERERGITISTAHVEYESASRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAA
                     DGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDPELLELVEMEVRDLLSSYDFPGDD
                     IPIVVGSALKALEGEDSDIGVKAIEKLVETMDSYIPEPVRNIDKPFLLPIEDVFSISG
                     RGTVVTGRVESGIVKVGEEVEIVGIRDTQKTTCTGVEMFRKLLDEGRAGDNVGVLLRG
                     TKRDEVERGQVLAKPGTIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVT
                     GTCDLPSGVEMVMPGDNVQLVVSLHAPIAMDEGLRFAIREGGRTVGAGVVAKIIE"
     gene            1230..1305
                     /locus_tag="JBH85_06925"
     tRNA            1230..1305
                     /locus_tag="JBH85_06925"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1263..1265,aa:Trp,seq:cca)
     gene            1319..1690
                     /gene="secE"
                     /locus_tag="JBH85_06930"
     CDS             1319..1690
                     /gene="secE"
                     /locus_tag="JBH85_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HAU0945931.1"
                     /translation="MKSSNENQGKMKDIMSWLAIILATAGAFVCTYYYTFTGPIQSII
                     WLAWLILILFLGYLTTTGKRVFVFAQEAKVELLKVVWPTRQETIQTTTIVMVMVGLTG
                     FILWGVDSIMMWAIAKLTHLG"
     gene            1687..2241
                     /gene="nusG"
                     /locus_tag="JBH85_06935"
     CDS             1687..2241
                     /gene="nusG"
                     /locus_tag="JBH85_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HAU0945932.1"
                     /translation="MNMVEENKAKQWYVVHAYSGYENFVMREITSRAKHHNLQDKIGE
                     VVVPSEEVVEMRSGQKRKSTRKFFPGYVLVHMVMDDQTWHMVRGIPRVLGFIGGTSQT
                     PTPISDKEAQAIMQRVEDGVTKPRPKILFEPGEVIRVKEGPFVDFNGVVEEVNYEKNR
                     LRVAVLIFGRSTPVELEFSQVEKT"
     gene            2352..2786
                     /gene="rplK"
                     /locus_tag="JBH85_06940"
     CDS             2352..2786
                     /gene="rplK"
                     /locus_tag="JBH85_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HAU0945933.1"
                     /translation="MAKKVEAYIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNA
                     ATQQMEQGLPIPVVITVYSDRSFTFITKTPPASVLLKKAAGIQSGSGTPNTKKVAKLN
                     VSQLEEIAKVKKPDLTAADLAAAVRSIAGTARSMGIEVEGLE"
     gene            2796..3491
                     /gene="rplA"
                     /locus_tag="JBH85_06945"
     CDS             2796..3491
                     /gene="rplA"
                     /locus_tag="JBH85_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HAU0945934.1"
                     /translation="MSKLTKKQKKIAEVIKPNQLYTVADAVAILKQFASKKFRESLDI
                     SINLGVDPRKSDQVVRSSTNLPKGTGKTVRVAVFAQGDNAAKATAAGADIVGFEDLAD
                     KIKAGEMNFDVVIATPDAMRIVGQLGQILGPRGLMPNPKVGTVTTNVEAAVNDAKSGQ
                     VRYRTDKNGIIHCTVGKADFAPEDVLENVVALINDLKKAKPASSKGQYLKKISLSTTM
                     GPGLPIDISSIPV"
     gene            3664..4197
                     /locus_tag="JBH85_06950"
     CDS             3664..4197
                     /locus_tag="JBH85_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HAU0945935.1"
                     /translation="MTLNLAAKKAVVEEVTAVASKAISAVVADYRGLTVNQMTQLRSE
                     ARKSGVYLRVVRNTLTRRAFKNTEFECLNDLLVGPVFIALSLEAPSDAARLLKDYAKT
                     FEKLEIRALSVGGKVYNANQIDAVASLPTRDEAISKLMYVMKAPIEKFVRTLAEPHAK
                     LARTLAAVKDKKAGNPA"
     gene            4228..4608
                     /gene="rplL"
                     /locus_tag="JBH85_06955"
     CDS             4228..4608
                     /gene="rplL"
                     /locus_tag="JBH85_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HAU0945936.1"
                     /translation="MAVSKNEILETISNMTVMEVVELIEAMEEKFNVSAAAAAVAVAA
                     PAAGAGAAAAEEQTEFTVVMTSFGSNKVNVIKAIRGITGLGLKEAKDLVEGAPSTVKE
                     GVSKDEAASIKKELEEAGATVEVK"
     gene            4700..8806
                     /gene="rpoB"
                     /locus_tag="JBH85_06960"
     CDS             4700..8806
                     /gene="rpoB"
                     /locus_tag="JBH85_06960"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HAU0945937.1"
                     /translation="MAVAEAKPQYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRD
                     FLQTDTKLSEQLNTGLHAAFSSVFPIESFSGNARLEYVGYKLGEPAFDVRECKLRGLT
                     YSAPLRVKIRLVVLDKDASDDPKPIKDIREQDVFMGEIPLMTDVGTFVVNGTERVVVS
                     QLHRSPGVIFEHDKGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVYVRIDRRRKLP
                     VTILLRALGYEAEDILSEFFETTHCHLKNGEYHIDLIPQRLRGEIASFDIHVPETGEL
                     IVEQGRRITARHIKQMEKSQMQDLVVPRDYLIGKTLAKNIIDTSTGEFLAQANDEITE
                     ELLDAMANHGILQIDMIYTNDLDHGSYISDTLKIDPTGSQLEALVEIYRMMRPGEPPT
                     KEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIKSDEGPGTLTKEDILSVIKTLIDI
                     RNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVERAVKERLSLVESENLMPQDLI
                     NAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSALGPGGLTRERAGFEVRDVH
                     TTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCRKVVNGRVTDEVEYLSAI
                     EEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTTPDKINYMDVSPKQIVSVAASL
                     IPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDSGVSVVAKRGGVID
                     LVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVSTGDRIQRGDVL
                     ADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIHIEELTCIAR
                     DTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGKVTPKGETQLTPEE
                     KLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAKSIEEEHLARVR
                     KDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVEREKWFDIRI
                     EDDAISQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVYLAVKRRI
                     QPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVLETHLG
                     LAAKGLGRKIAQMLDEKQTPEAIKAYLEKIYNHDGVQRVNLKCLNDDELMTLADNLRA
                     GVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLKLN
                     HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
                     SDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD"
     gene            8853..13100
                     /gene="rpoC"
                     /locus_tag="JBH85_06965"
     CDS             8853..13100
                     /gene="rpoC"
                     /locus_tag="JBH85_06965"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HAU0945938.1"
                     /translation="MATLSNDPMKKAPVMSDLLGILKQQGQSEEFDAIKIALASPELI
                     RSWSYGEVKKPETINYRTFKPERDGLFCAKTFGPVKDYECLCGKYKRLKHRGVICEKC
                     GVELALAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFEAFVV
                     VDPGMTELERGQLLNDEAYLDAMEQYGDEFDARMGAEAIRDLLRQIDLEDEIRNLREE
                     LPTTNSETKIKKITKRLKLLEAFYESGNKPEWMIMDVLPVLPPDLRPLVPLDGGRFAT
                     SDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQESVDALLDNGRRGRAITGTN
                     KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKKMALELFK
                     PFIFSKLEFRGLATTIKAAKKMVEREESVVWDILDDVIREHPILLNRAPTLHRLGIQA
                     FEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEARSLMMSTNNILSPA
                     SGEPIIVPSQDVVLGLYYLTREKVNALGEGKIYSSAQEAQNFYEAGHLDIHAKIKIRM
                     PKEDGETGYHLVETTVGRAILAEILPKGMPFDYINRTMTKKVISKVIDSCYRKFGLKE
                     TVIFADQLMYTGFKYATRSGASIGIEDMEIPDDKASIIEHADNEVREIESQFRSGLVT
                     NGERYNKVIDIWSRTNELVAKSMMSKIATEEVTDAKGNKVRQESFNPIFMMADSGARG
                     SAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQYFISTHGARKGLADTALKT
                     ANSGYLTRRLVDVAQDVVITEDDCGTDTGILMQPLIEGGDIVEPLHERVLGRVVASDV
                     YIPTQTEPVVKAGTLLDEEWVEKLEKHGVDQVMVRSPITCQTRFGLCAKCYGRDLARG
                     HLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQIKTKGVIRLHNIK
                     TVTHENKNLVAVSRSGEVTIVDEFGRERERYKVPYGAVISAQDNSPVEAGQVIATWDP
                     HTHPVISEVSGRLKFVDLIDGITMNRQTDELTGLSNIVIIDAKQRSAAGRDLRPMVKL
                     VTDEGDDIYLAGTNVPAQYYLPVDAIVNFEDGSLVGIGDVIARIPQERSKTRDITGGL
                     PRVADLFEARKPKDSAVMAEVSGLVNFGKETKGKRRLIINVSEDQCHEELIPKWRHIS
                     VFEGEHVERGEIIAEGALNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHIEV
                     IVRQMLRKRVITFAGDSKFLVGEQVEESAMLQENDKLLAEGKQIARGTPILLGITKAS
                     LATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVGRLIPAGTGYTYHQSRKA
                     KRARVAAGGDSSATHTVTASDVEHALSEALNADNHEH"
     gene            13214..13594
                     /gene="rpsL"
                     /locus_tag="JBH85_06970"
     CDS             13214..13594
                     /gene="rpsL"
                     /locus_tag="JBH85_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HAU0945939.1"
                     /translation="MATINQLVRKPRVDVKKKSNVPALESCPQRRGVCTRVYTTTPKK
                     PNSAMRKVARVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
                     DTSGVNDRKQGRSKYGTKKPKDKK"
     gene            13615..14142
                     /gene="rpsG"
                     /locus_tag="JBH85_06975"
     CDS             13615..14142
                     /gene="rpsG"
                     /locus_tag="JBH85_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HAU0945940.1"
                     /translation="MPRRREVPKREILPDPKHHSELLAKFINVLMVSGKKSIAEKITY
                     GALSVMEERVKKIKKNEEDGSETGSSGSAGAVLRYFEEALDNVRPSVEVRSRRVGGAT
                     YQVPVEVRHDRSIALGMRWIVQAARTRGEKGMMLRLAGELMDAYENKGSAVKKREDTH
                     KMAKANQAFAHFRWN"
     gene            14157..16241
                     /gene="fusA"
                     /locus_tag="JBH85_06980"
     CDS             14157..16241
                     /gene="fusA"
                     /locus_tag="JBH85_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HAU0945941.1"
                     /translation="MATPLKLYRNIGIAAHVDAGKTTTTERVLYYTGMSHKIGEVHDG
                     AATMDWMVQEQERGITITSAATTCYWSGMDKQFESHRINIIDTPGHVDFMIEVERSLR
                     VLDGAVVVFDSVAGVEPQSETVWRQANKYGVPRIVFVNKMDRMGANFLRVVSQIKQRL
                     GSTPVVLQLPIGAEEEFKGVIDLIKMKAIHWDEENKGMTFKYVDIPADLKSTCEEYRA
                     HIIEAAAEYSEELMEKYLEGEEFTEAEIKKALRHLTITNKVVPVFCGSAFKNKGVQAV
                     LDGVIEYLPSPTDIPDIQGVDEHGDVIHRKTSYDEPFSALAFKIATDPFVGTLTYFRA
                     YSGILKSGDTVYNSVKGKKERIGRLLQMHANSREEIKEVRAGDIAAAVGLKTVTTGDT
                     LCDQDKVVILERMDFPDPVIAVAVEPKTKADQEKMGIALGKLAQEDPSFRVHTDEESG
                     QTIIQGMGELHLEIIVDRMKREFNVEANVGKPQVAYRETLKQAVEQEGKFVRQSGGRG
                     QYGHVWLKIEPQEPGKGYEFINAIVGGVIPKEYIPAVDKGIQEQMQNGVIAGYPVVDV
                     KVTLFDGSFHEVDSSEMAFKIAGSQCFKQGALKAKPVLLEPIMSVEVVTPEDYMGDVM
                     GDLNRRRGLVQGMEDSPAGKIVRAEVPLAEMFGYSTDLRSATQGRATYTMEFCKYAEA
                     PTNIAEAIIKKQ"
BASE COUNT         5234 a         2833 c         3832 g         4361 t
ORIGIN      
        1 cgtaagaagc cgcacgtaaa cgtgggcacg attggtcacg tagaccatgg taagacgaca
       61 ttgacagcag ctattacaac gattatggcg aagaaatatg gtggtacagc gaaggcgtac
      121 gatcaaattg atgctgcgcc agaagaaaga gagcgtggga ttactatttc tacagcacat
      181 gttgaatacg aatcagcgag cagacattat gcacacgtag actgcccggg acatgctgac
      241 tatgttaaga acatgattac tggtgctgcg caaatggacg gagcgatact ggttgtatca
      301 gcagctgatg gtcctatgcc acaaacgagg gaacacattc tattgtctcg ccaggtaggt
      361 gttccatata ttgttgtgtt catgaacaaa gcggatatgg ttgatgaccc tgagttatta
      421 gagttagtgg aaatggaagt gcgagattta ttaagcagtt acgatttccc aggggatgac
      481 atacctattg ttgttggttc agctttgaaa gcattggaag gtgaagacag tgatataggc
      541 gttaaggcta ttgagaaatt ggttgaaaca atggattcat acattcctga gccagttaga
      601 aacatagaca agccattttt gttgccgatt gaagacgtat tttcaatttc tggacgcgga
      661 acagtggtaa ctggtcgtgt agagagtgga attgttaaag ttggtgagga agttgaaatt
      721 gttggaataa gagacaccca aaagacgact tgtacgggtg ttgagatgtt ccgtaaatta
      781 cttgatgaag gtcgagctgg tgataacgtt ggtgtgttat tacgaggtac gaagcgagat
      841 gaagtggagc gtggacaggt attggcgaag ccaggaacca tcaagccaca caccaagttt
      901 gaagcagaag tgtatgtatt atccaaggaa gaaggcggac gtcacactcc attctttaat
      961 ggataccgtc cacaattcta tttcagaacc actgacgtga caggtacttg tgacttgcca
     1021 tcaggagttg aaatggtaat gcctggagat aatgtgcaat tagttgttag cttgcatgct
     1081 ccgattgcga tggatgaagg tttaagattc gcaattagag agggtggccg aactgttggc
     1141 gccggtgtag tcgctaaaat aatcgagtaa tagaaaaaag tacaaaagtg gcatgagcct
     1201 tatatacatg gctcatgtca ataaaattta ggccagtagc tcaattggca gagtggcggt
     1261 ctccaaaacc gcaggttggg ggttcgattc cctcctggcc tgccaactac aagtaaatat
     1321 gaaaagttca aacgaaaatc aaggtaagat gaaagatata atgtcctggc tagctatcat
     1381 attagctacg gcaggagctt ttgtatgtac ttactattat acgttcacag gaccaattca
     1441 atcgataata tggcttgctt ggcttatttt gatccttttc ttgggttact taacaacaac
     1501 aggtaaaaga gtctttgtgt ttgcgcaaga agcaaaagtt gaattattaa aagtggtttg
     1561 gcctacacgg caagaaacaa tacaaacaac tactatagta atggtgatgg ttggattgac
     1621 aggatttata ctctggggag tagattcaat catgatgtgg gcaattgcta agttaacaca
     1681 tttagggtga atatggttga ggaaaacaaa gcaaaacagt ggtacgttgt acatgcctat
     1741 tcaggatatg aaaattttgt catgcgcgaa ataacatctc gtgcaaaaca ccacaattta
     1801 caagataaaa taggcgaggt agttgtacct tcagaagaag ttgttgaaat gcgttcaggc
     1861 caaaagcgta aaagtacccg caaatttttc ccaggctatg tactcgttca tatggtaatg
     1921 gatgatcaaa catggcacat ggttagaggc atacccagag ttctaggctt tattggagga
     1981 accagccaaa ccccgactcc gatttctgat aaagaagctc aggccattat gcaacgagtt
     2041 gaagatggcg taactaagcc aaggccaaag atactatttg agcctggaga agtaatcaga
     2101 gtgaaagaag gtccatttgt tgactttaat ggagttgttg aagaggtcaa ttatgagaaa
     2161 aacagactaa gagtcgccgt tcttattttt ggacgctcaa ctccagtaga acttgagttc
     2221 agtcaagtag aaaaaacata aatgatttag ataagaattt aaatttaaag gttttacaaa
     2281 accggggagc tagaacttaa ttgaaaatgc taattcaata aaagctagcg catgacccat
     2341 aaggagtaat aatggcaaaa aaagtagaag catatattaa attacagatt cctgcaggaa
     2401 aagcaaatcc tagccctcca gttggacctg ctttaggtca acgtggggta aatattatgg
     2461 aattctgtaa agcattcaat gctgcgacac agcaaatgga acaaggtctg cctattccag
     2521 ttgttatcac tgtatatagt gatcgtagtt ttacctttat aaccaagacc cctccagctt
     2581 cagttcttct gaaaaaggct gctggtattc aaagcggaag tggcacacca aatactaaaa
     2641 aagtagccaa actgaatgtt agtcaacttg aagaaattgc taaggtcaag aaacctgatc
     2701 tgacagcggc tgatctagca gcggcagtaa gaagtattgc aggtacagca cgcagcatgg
     2761 gtattgaagt tgaaggtttg gaataagggg ttactatgtc aaaattaact aagaaacaaa
     2821 agaaaatagc ggaagttatt aagccaaatc aactctatac agttgctgat gctgtagcta
     2881 ttctaaagca atttgcatca aaaaaatttc gtgagagcct tgatatcagt attaatttag
     2941 gagttgatcc tcgtaagtcg gatcaagtag tacgatcttc caccaatctg ccaaaaggta
     3001 caggaaaaac agtacgagtt gccgtttttg cccaaggtga taatgctgct aaagcaactg
     3061 ctgcaggtgc cgatatagtc gggtttgaag atctggctga taaaatcaaa gcaggcgaaa
     3121 tgaattttga tgttgttatt gcaactccag atgctatgag aatcgtaggt cagctcggac
     3181 agattttggg accgagggga cttatgccca atcctaaggt tggaacagta acaactaacg
     3241 tggaagcagc ggttaatgat gctaaatcag gacaagtaag atatagaact gataaaaatg
     3301 gaatcattca ttgtactgtt ggaaaggcag attttgctcc tgaagatgtt cttgaaaacg
     3361 tagttgcgtt aatcaatgat ctgaagaagg caaagccagc atcctctaaa gggcaatatc
     3421 tgaagaaaat atctttatct acaacaatgg gacctgggtt acctattgat atttcatcaa
     3481 tacctgtgta acatatcatc ccatttttaa gaattcacgg catagattag gttccatgcc
     3541 gtcgaagacc gcaggtgcct aggcttaatt tcctgcgcag acggtgaacc ggctccttaa
     3601 taaagagacg gccaccataa ctgtcaagtc catgagattt gtacatatta ggaggtcagt
     3661 aacgtgacat taaatttagc tgcaaaaaaa gccgttgttg aagaagtgac tgcagtcgcg
     3721 tcaaaggcta tttcagcagt ggttgctgat tatcgtgggt taactgtaaa tcaaatgacg
     3781 caattgcgta gtgaagcacg gaaatccggt gtttatcttc gtgtggtgcg aaatacacta
     3841 acaagaagag cgtttaaaaa cactgaattt gaatgcttga atgacttact tgtaggtcca
     3901 gtatttattg cattgtcact ggaagcacca agtgatgctg caaggctact gaaagattac
     3961 gcaaaaacat ttgaaaaact tgagattaga gcattatcag ttggcgggaa ggtatacaac
     4021 gcaaatcaaa ttgatgccgt tgcgagcttg ccaacacgcg atgaggcaat atccaagtta
     4081 atgtatgtga tgaaagcgcc aattgagaaa tttgttcgca cacttgcaga gccacatgcc
     4141 aagttggcta gaactcttgc tgctgtaaag gacaagaaag caggcaatcc cgcttaatca
     4201 ttatttaatt ttaattagga gctagtaatg gctgtatcaa aaaacgaaat tttagaaaca
     4261 atttctaaca tgacagtgat ggaagttgtt gaattaatcg aggcaatgga agaaaaattt
     4321 aatgtttctg ctgccgctgc tgccgtagct gttgcagcac ccgctgcagg tgctggtgcc
     4381 gctgctgctg aagaacaaac tgagtttact gttgtaatga ccagctttgg ttctaacaag
     4441 gtaaacgtaa tcaaggcaat tcgtggtata actggtctgg gcttgaaaga agctaaagac
     4501 ttagtagaag gtgcaccatc aactgttaaa gaaggtgtat caaaagatga agctgccagt
     4561 atcaagaaag agcttgaaga agctggtgct acagtagaag ttaaataatt aaaatatagc
     4621 agtatttaag aacccagcca tgttcacatg gctgggttta ctcgtttgaa aatcatcaat
     4681 aatttacaga ggaaccacca tggcagttgc agaagctaaa cctcaatatt cgcatgctga
     4741 gaaaaaacga tttcgcaaaa gctttggtaa gcagacagat ataatgccaa taccgaatct
     4801 gcttgaaatt caacttaaat cctacaggga ttttcttcaa actgatacta aattaagcga
     4861 acaactgaat acgggattgc atgctgcatt ttcttctgta tttcctatcg aaagcttttc
     4921 tggcaatgca agacttgaat acgtcggata caagcttgga gagcctgcat ttgatgttcg
     4981 cgaatgcaaa ctacgagggc taacttactc agctcctcta agagtcaaga tcagactcgt
     5041 tgtgcttgat aaagatgcaa gcgatgatcc taagcctata aaggatatta gagagcaaga
     5101 tgtttttatg ggggaaattc ccctaatgac cgacgttggt acgtttgtgg tcaatggaac
     5161 tgaacgtgtt gttgtttcac aattacatcg ttcgcctgga gttatatttg aacatgacaa
     5221 gggaaaaact cactcttcag gtaaattgct ctattccgca cgaataatac cttatcgtgg
     5281 ttcatggtta gattttgaat tcgatcctaa agattgcgtt tatgtacgta ttgacagacg
     5341 tcgaaaactg ccagtgacca ttttgctcag agcattgggc tacgaagcag aagatatatt
     5401 aagcgaattt tttgaaacaa ctcattgtca tctaaaaaat ggcgaatacc atatcgattt
     5461 aattccacag cgtttgcgtg gtgaaatcgc ctcattcgac attcatgttc ctgagacagg
     5521 agagcttatc gtagagcaag gtcgtcgaat tactgcaaga catataaagc aaatggaaaa
     5581 aagccaaatg caggatcttg tggtgccaag agactattta attggaaaaa cattagcaaa
     5641 aaatattatt gatacctcaa ccggtgaatt tctggctcaa gcgaatgatg agataacgga
     5701 agagctttta gatgctatgg ctaaccatgg tattttacaa attgatatga tctatactaa
     5761 tgatttggat catggttctt acatatcgga tacattaaaa attgatccca cagggtcaca
     5821 actagaagcg ctcgttgaaa tttaccgcat gatgcgccct ggagagcctc ctacaaaaga
     5881 agctgctgag gcactattca aaaatctatt ctttgttgaa gaaagatatg atctatctgc
     5941 tgttggcaga atgaaattta atcgtcgcgt aggaattaag agtgacgaag gcccaggcac
     6001 tttaacgaaa gaagatattt tatctgtcat taaaacactg atagatattc gaaacggtat
     6061 agggatggtt gatgatatcg atcatctagg aaatcgtagg gtaagaagtg ttggcgaaat
     6121 gaccgaaaat cagtttagag taggtcttgt tcgagttgaa cgtgctgtta aagagcgctt
     6181 aagtttggtt gaatctgaaa atctgatgcc acaggactta attaacgcaa aaccagtatc
     6241 cgccgcaatt aaagagtttt ttggatccag tcagttatca cagtttatgg atcaagtgaa
     6301 tccattatct ggtgttacgc ataaaagacg tgtatcagct cttgggccag gtggtttaac
     6361 acgtgagcgg gctggatttg aagtccgtga cgtacataca acacactatg gtcgtgtgtg
     6421 tccaattgaa acgcctgaag gaccaaatat tggtctaatc aattcactgt cagtttatgc
     6481 aagaactaac gaatatggat ttattgaaac tccttgtcga aaggtcgtta atgggcgtgt
     6541 gacagatgaa gttgaatacc tatcggctat tgaggaagtt gatcaataca ttgcacaatc
     6601 caatgttgag ttagacgcac aaggaaatat tcttgctgac ttagttcctt gcagacatca
     6661 aaatgaattt tcactgacta ctccggataa aattaactac atggatgtct cgcccaagca
     6721 aattgtgtca gttgctgctt cattgattcc gtttttagag cacgatgacg caaacagagc
     6781 attaatgggt tcaaacatgc aacgacaggc tgtaccaacc ttgcgttcag aaaagccctt
     6841 ggttgggacc ggtatggaaa gaatcgttgc atctgattca ggagtctcag ttgttgcgaa
     6901 gagaggtgga gttattgatc tagttgatgc ttctcgtatt gttgttcgag tgaatgacga
     6961 tgaaacaaca gcaggggaaa caggggtaga tatttataac ttaaccaagt atttccgttc
     7021 taaccaagat acttgtatca atcaaagacc gatagtatca acaggtgatc gaattcaacg
     7081 aggtgatgtc ctggctgatg gtccatgtac agatatgggt gaattggctc ttggacagaa
     7141 tctactggta gcgtttatgc cttggaatgg ttataacttt gaggattcca ttcttatatc
     7201 tgaacgaatc gttcatgacg acagattcac tactattcac atcgaagagt taacatgtat
     7261 agctcgagat accaaattag gtacagaaga aattacagca gatattccca atgtaggcga
     7321 gtctgcactc tccaatttgg atgaatctgg agttgtttac ataggtgcag aagttaaagc
     7381 aggtgatatt cttgtgggga aagtaactcc taaaggagaa acccaactaa ctccagaaga
     7441 aaaactgtta agagctatct ttggtgaaaa agcttcagat gttaaagatt catctttgag
     7501 agttccatca ggtatgaatg gaacagtgat cgatgtacaa gtctttaccc gtgatggact
     7561 tgaaaaggat gcccgtgcta aaagcattga agaagagcat ctagctcgag ttcgcaagga
     7621 tttaatagac gaacggcgta ttcgtgaaga agatatctat catagagttt ctcatttgct
     7681 gttggataag gtggcaacag gcggtcctgg aagcctaaag cctggatcta aaatcaccca
     7741 ggattaccta gacaaagttg aaagagaaaa gtggtttgat attcgtatag aagatgacgc
     7801 aattagtcag caacttgaac aattatccaa gcaactggaa cttttaacaa aagaaatgga
     7861 aaagcgcttt aatgacagta gaaagaaaat tatccaggga gacgatttag ctcctggtgt
     7921 attaaaaatt gttaaagtgt atttggctgt taaaagaaga attcagcctg gagataaaat
     7981 ggcaggtcgt catggaaaca agggtgtgat ctccattgtt gttccagttg aagatatgcc
     8041 acatatggaa gatggaacgg ctgtagatat cgttcttaat ccattgggcg taccatcgcg
     8101 aatgaatatt ggccaggttc ttgaaacgca tctgggacta gctgccaaag gattaggaag
     8161 aaagattgca cagatgcttg atgaaaagca aacacctgaa gcaataaaag cataccttga
     8221 gaaaatttat aatcatgacg gagtgcagcg tgttaatttg aaatgcctca atgatgatga
     8281 attaatgaca ctggcggata acctgagagc tggtgtgccg atggcaaccc ccgtctttga
     8341 tggtgctact gagcaagaaa tcaaaagtat gttgcagtta gcagatttgc cagcagatgg
     8401 taagaccgtg ttgatagatg gccgaacagg taataaattt gataatccgg ttactgtagg
     8461 ctacatgtat atgttgaagt taaaccattt ggttgatgac aagatgcatg ctcgttcaac
     8521 tggatcatac agtttggtca ctcaacagcc acttggcggt aaagcacagt ttggtggtca
     8581 gcgttttggt gagatggaag tatgggcatt agaagcatat ggtgcagcat acactttaca
     8641 agaaatgtta accgtaaaat cagatgacgt cggaggtcga acaaagatct ataaaaatat
     8701 agtcgatgga gatcatcgta tggacccagg aatgcctgaa tccttcaatg tattattgaa
     8761 ggaaattaga gcactgggaa ttgatatcga gttggagcat gactaactca tcagcgatac
     8821 atactgacta accatttttt ggaggcatag acttggctac cctaagcaac gacccaatga
     8881 aaaaagcacc agtaatgagt gacttacttg gtattcttaa gcaacaaggt caaagtgaag
     8941 aatttgatgc aataaaaatt gcactggcgt cacctgaatt aattcgatca tggtcctacg
     9001 gcgaagttaa aaaacctgaa acaatcaact acaggacatt taagcctgaa agagatggtt
     9061 tgttttgtgc taaaactttt ggtccagtta aagattatga gtgtttgtgt ggaaagtaca
     9121 agcgactaaa gcatcgtggt gttatttgcg agaagtgtgg ggttgaattg gctcttgcca
     9181 aagtgagacg agaaagaatg gggcatatcg aactcgctag cccagtcgct cacatatggt
     9241 tcttaaaatc cttaccatca agaattggtt tgctcctcga tatgacacta agagatatcg
     9301 aaagagtact ctattttgaa gcttttgtcg ttgttgatcc tggaatgaca gaacttgaaa
     9361 gagggcaact acttaacgac gaagcctatc ttgatgcgat ggaacagtat ggtgatgagt
     9421 ttgacgcgcg tatgggcgca gaagcaattc gtgatttatt gcgccaaatt gatctggaag
     9481 atgaaattag aaatttacgt gaagagcttc caacaactaa ctctgagacg aagattaaaa
     9541 aaatcaccaa aagactcaag ttattagaag ctttttacga gtcaggaaat aaaccagaat
     9601 ggatgatcat ggatgtactt ccagtgcttc cacccgattt gaggccattg gttccgctag
     9661 atggtggacg ttttgctact tcagacttga atgatttata caggcgcgtc attaatagga
     9721 acaaccgact aaaacgcctg ctggatctaa atgcgccaga cattatcgtt cgtaacgaaa
     9781 aacgaatgct gcaagaatcc gtagatgctt tacttgataa cggcagaaga ggtcgtgcca
     9841 tcactggtac aaataagaga cctcttaaat cactggcaga tatgattaaa ggtaaacagg
     9901 gtcgtttcag gcaaaacctc ttaggtaagc gtgtcgacta ctctggacgt tcagttattg
     9961 tagttggacc aactttaaaa ttgcaccaat gcggattgcc taaaaaaatg gcgttggagt
    10021 tattcaagcc atttatattt tccaaattgg aatttagagg tttggcaact actatcaaag
    10081 cggccaagaa aatggtcgaa agagaagaat cggtggtttg ggatatatta gatgatgtta
    10141 ttagagaaca tcctatcctt ttaaaccgtg ctcctacctt gcatagatta ggtattcaag
    10201 catttgagcc tgttttaatt gaaggtaaag cgatccagct ccatcctttg gtatgtacag
    10261 catacaacgc tgacttcgat ggagaccaaa tggctgtgca cgtgcccttg acactggaag
    10321 cgcagctgga agctcgttca ttgatgatgt ctacaaacaa tatattatct ccagccagtg
    10381 gtgagccaat tattgttccc agtcaggacg tcgtccttgg gctatactat ttaacacgag
    10441 aaaaggttaa tgcattaggc gaaggaaaaa tatattcaag tgctcaggaa gcgcaaaatt
    10501 tctatgaagc aggtcatttg gatatccatg caaaaattaa aattcgtatg cctaaagaag
    10561 atggtgaaac tggatatcat ttggttgaga caacagtcgg acgcgctatt ttagctgaga
    10621 ttttgcctaa aggaatgcca tttgactata taaaccgtac aatgacaaaa aaggttatct
    10681 caaaagtaat agacagctgt taccgtaaat tcggcttgaa agaaacagtc atttttgctg
    10741 atcagttaat gtataccggg tttaaatacg ccacacgatc tggagcatcc ataggtattg
    10801 aagacatgga aataccagat gataaggcca gtattattga acacgccgat aatgaagtaa
    10861 gagaaatcga gtctcaattc agatcaggtc tggtaacgaa tggtgaacga tacaacaagg
    10921 taattgatat ttggtcaaga actaatgaat tagttgccaa atcaatgatg tctaaaattg
    10981 caacagaaga agtcactgat gcaaaaggca acaaagtaag acaagaatca tttaacccaa
    11041 ttttcatgat ggctgattct ggagctagag gttctgctgc tcagatacga cagcttgccg
    11101 ggatgcgagg tttgatggca gctccagatg gctcaatcat tgaaacgcct atcactgcaa
    11161 acttccgcga aggtttgaat gtattccagt actttatttc tacacacgga gctcgtaagg
    11221 gtttggcaga tacggcgtta aagacagcaa actcagggta tctgacacga cgcttggtag
    11281 atgttgcgca ggatgttgtt attaccgaag atgattgtgg tactgataca ggtattctaa
    11341 tgcaaccact gattgaaggt ggtgatattg ttgagccttt gcatgaacgc gtccttgggc
    11401 gggtggttgc ttcagatgtc tatattccta ctcaaactga accagtagtc aaggctggaa
    11461 ctttactgga tgaagaatgg gttgaaaaat tagagaagca tggggtagac caggttatgg
    11521 tcaggtcacc aatcacttgt caaacaagat ttggtctttg cgcaaaatgc tatggtagag
    11581 atcttgctcg tgggcatctt gtcaacacag gtgaagcagt tggtattatc gcagcacaat
    11641 caatcggtga gccaggaaca cagttaacca tgcgtacctt ccacattgga ggtgctgcat
    11701 caagggcaac agctgcgaat aatattcaaa ttaaaacgaa aggggttatt cggttacata
    11761 atataaagac cgtaactcat gagaataaaa acctggtggc agtttctcgc tcaggtgagg
    11821 taactattgt tgatgagttc ggacgagaaa gagagcgata taaagttcct tatggtgcag
    11881 taatttcagc acaggataat tctcctgttg aagctggtca ggttattgca acgtgggatc
    11941 cccatacgca tcctgttatt tccgaagtgt cagggcgttt aaagtttgtt gatctcattg
    12001 atggcattac aatgaataga caaactgatg aattaactgg attaagcaat attgtaataa
    12061 ttgatgccaa gcaacggagt gcagcaggtc gagatttgcg cccaatggta aaattagtta
    12121 cagatgaagg ggatgacata tatcttgctg gaaccaatgt cccggcacaa tattatctac
    12181 ctgtcgatgc cattgtgaac tttgaagatg gaagtctggt gggaatagga gacgttattg
    12241 cccgtattcc gcaggaacgt tctaaaaccc gagatattac cggaggtttg cccagagtag
    12301 cggacttatt tgaagccaga aaaccaaagg attctgcagt aatggcagaa gtatcaggat
    12361 tggttaattt tggtaaagaa accaaaggta agcgacgctt gattatcaat gtatcggaag
    12421 atcaatgtca tgaagagctt attcctaaat ggcgtcatat ttcagtgttt gaaggcgagc
    12481 acgtagagcg tggtgaaatc atcgcagagg gtgcacttaa ccctcatgat atattgcgct
    12541 tgttaggtgt tggagcgctg gctaattaca ttgtaaatga ggtccaggac gtctatcgtt
    12601 tacaaggtgt gaaaattaat gataaacaca ttgaagtaat tgtcagacaa atgctacgta
    12661 agagagttat tactttcgct ggtgactcaa aattcctcgt aggagagcaa gtagaagaga
    12721 gtgctatgct tcaggaaaat gataaacttc tggctgaagg aaagcagatt gcgcgaggta
    12781 ctcctatttt actaggtatc acaaaagctt cattagctac agaatcgttt atatcagccg
    12841 cttcattcca agagacaacc agagtcttga ctgaagcagc agtaagcgga aaagttgatg
    12901 aattgcgtgg tttaaaagaa aacgtgatgg taggtcgcct aattccagca ggaacaggtt
    12961 atacttatca tcaaagccga aaggcaaaaa gagcaagggt tgcagcaggc ggagacagtt
    13021 cagcaacaca cacagttact gcaagtgatg ttgaacacgc gttgagtgaa gcattaaacg
    13081 cggataatca tgaacattaa tcaggattca aaaatggcag atttaagctt gacaaatctg
    13141 ccgtacctat atagaatccg gcctccttat gcattcaaaa tattcacaag tgacagatcg
    13201 gagttaagta caaatggcta ctattaatca gttagtaaga aagcctcgtg tggacgtaaa
    13261 gaagaaaagc aacgtgccag cacttgagtc atgtccacaa agacgcggtg tatgtactcg
    13321 tgtatacact actacaccaa aaaaacctaa ctcagctatg cgtaaggttg cacgtgtgcg
    13381 cttgaccaat ggatttgaag taacatccta tattggtggt gagggtcata atttacaaga
    13441 gcactctgtt gttttaatta gaggtggtcg tgttaaggat ttacctggtg tgcgctatca
    13501 tacagttcga ggtagcttag atacttcagg agtgaacgac cgaaaacaag ggcgttccaa
    13561 gtatggtaca aaaaagccaa aagataaaaa ataaccgatt gtaggaaaat tgagatgcca
    13621 agaagacgag aagtacccaa acgagaaatt ttacctgatc caaaacatca tagtgaactg
    13681 cttgctaagt tcatcaacgt tttaatggtt agtggtaaaa aatcaattgc tgaaaaaatt
    13741 acttatggtg cgctgtctgt tatggaagag cgtgtcaaaa aaattaagaa aaatgaggaa
    13801 gatggaagtg aaactggcag cagcggaagt gccggtgccg tacttcgtta ttttgaagag
    13861 gctttagata acgttcgccc aagtgtggaa gtacgttcac gccgagttgg tggcgcaaca
    13921 taccaagttc cagtagaagt tcgacatgat agaagcatag cgcttggaat gcggtggata
    13981 gttcaagctg ctcgcacacg tggtgaaaaa ggtatgatgc tgcgtttggc aggggaactg
    14041 atggacgctt atgaaaataa agggtctgca gtaaagaaac gtgaagatac acataaaatg
    14101 gcaaaagcta accaagcctt tgctcatttt agatggaatt aagagagaga taagccgtgg
    14161 caactccatt aaaactatat agaaacatag gcattgcagc ccacgttgat gctggaaaaa
    14221 caacaactac agaacgagta ttgtactata ccggaatgtc tcataagatt ggtgaggtac
    14281 atgatggtgc tgcaactatg gactggatgg tccaggagca ggaacgtggt attaccatta
    14341 cttctgctgc aacaacttgt tattggtctg gtatggacaa acaatttgaa tcccatcgga
    14401 tcaatataat tgatacacca ggacacgtag actttatgat tgaagtcgaa cgctctttac
    14461 gtgtactaga tggagcagtt gttgtatttg attcagttgc cggcgttgaa cctcaatctg
    14521 aaacagtatg gcgtcaagcc aataaatatg gtgttcctcg tatcgttttt gtaaataaaa
    14581 tggataggat gggtgccaat ttcctaagag ttgttagcca gattaagcaa cgattaggct
    14641 ctactcctgt tgtgttacaa ttaccaattg gcgcagaaga agagttcaaa ggtgtgattg
    14701 atctcattaa aatgaaggca attcactggg atgaagaaaa taaaggtatg acatttaaat
    14761 atgttgatat tcctgctgat ttaaagtcaa cctgtgaaga ataccgtgca cacatcattg
    14821 aagcagcagc agaatactct gaagagttaa tggaaaaata tttggaaggc gaagaattca
    14881 cagaggcgga aattaaaaag gctcttcgtc atctgacaat cacaaataaa gttgttcctg
    14941 tattctgtgg atcagccttt aagaataagg gtgtccaagc agtactcgat ggagtaatag
    15001 aatatttacc atcacccact gacattcctg atattcaggg agttgatgag catggtgatg
    15061 taatccatag aaaaaccagt tatgatgaac cattctcagc gttagcgttc aaaattgcaa
    15121 ctgacccatt tgtgggtacg ctaacatatt ttagagctta ttctggtatt cttaagagtg
    15181 gggatactgt ctacaactca gttaagggta aaaaagaacg tattggccgt ttgttgcaga
    15241 tgcacgccaa ttcacgtgaa gaaattaaag aagtgcgagc aggggacata gctgctgctg
    15301 ttggacttaa aacagtaact actggtgaca ccctctgtga tcaagataaa gttgtaatat
    15361 tagagagaat ggatttccca gatccagtta ttgcagttgc tgttgaacca aaaactaaag
    15421 cggatcagga aaaaatggga attgctttag gcaagttagc ccaggaagac ccttctttca
    15481 gagtacatac tgatgaagag tcaggccaga caatcattca aggtatgggt gaattacacc
    15541 ttgaaattat tgttgaccgc atgaagagag agttcaatgt agaagctaat gttggtaaac
    15601 ctcaggttgc ataccgagag acactcaagc aagctgttga acaagagggt aagttcgtaa
    15661 gacaatcagg tggacgtggt caatatggac atgtatggtt gaaaattgaa ccacaagaac
    15721 caggaaaagg ttatgaattt atcaatgcta tcgttggtgg cgtcattcca aaagaatata
    15781 tccctgcagt agataaaggg attcaagagc aaatgcaaaa tggtgtaatt gctggatatc
    15841 cagtggttga tgttaaagtt acactgtttg atggttcatt ccatgaagtt gattcaagcg
    15901 aaatggcatt taaaattgct gggtctcaat gcttcaagca aggtgcacta aaggcgaaac
    15961 cggtgcttct tgagccaatt atgagtgtcg aagttgttac acccgaagat tacatgggcg
    16021 atgttatggg tgatctgaac agacgccgtg gtttagttca aggtatggaa gactcgccag
    16081 caggcaaaat agttagagca gaggtgccac ttgcagagat gtttggttat tcaactgact
    16141 tacgttctgc tacacaagga agagcaacct acactatgga gttttgtaag tacgcagaag
    16201 caccaacaaa tattgctgaa gcaattatca agaaacaata aaagttaacg aggttattga
//
LOCUS       DACVWI010000059        16139 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.059, whole genome shotgun sequence.
ACCESSION   DACVWI010000059 DACVWI010000000
VERSION     DACVWI010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16139
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.059"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            40..231
                     /gene="rpmF"
                     /locus_tag="JBH85_06985"
     CDS             40..231
                     /gene="rpmF"
                     /locus_tag="JBH85_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HAU0945942.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTKPTLSVDPTTGETHLRHHMTP
                     DGYYRGKKIIDAETAYEQE"
     gene            237..1265
                     /gene="plsX"
                     /locus_tag="JBH85_06990"
     CDS             237..1265
                     /gene="plsX"
                     /locus_tag="JBH85_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HAU0945943.1"
                     /translation="MKNITIAIDAMGGDHGLEIVIPACIRAIKNNPDLKLLLVGVQDK
                     ISASLKKHGMLSCQQFTIVHASEVVTMDELPSHALRNKKDSSMRIAINLVKEGRAQAC
                     VSAGNTGALMATARYVLKTLPGIDRPAIVSELPTMGGKTRVIDLGANVDSCAEHLFQF
                     AVMGSALIQAIENKPKPKIGLLNIGVEEIKGNDQVKRTAHMLAECSVMNYVGYVEGDH
                     FYSGDVDLVVCDGFVGNVALKASEGLAKLLLTVLKESFSRNWLTKIAGLIALPALKHL
                     KNRLDPSRYNGASLLGLNGIVVKSHGGANEVGFQHAIEQAVLEVKNNVVDLVRDQIND
                     FINQGLLL"
     gene            1262..2215
                     /locus_tag="JBH85_06995"
     CDS             1262..2215
                     /locus_tag="JBH85_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HAU0945944.1"
                     /translation="MKNAVINGTGSYSPERQMTNAELETMLDTSDEWIVTRTGISSRS
                     VAQEHETTSYMASRAAEQALEASGLDAEEIDLILVATCTPDYFFPSVACHVQHALGIK
                     RPIPAFDIGAACSGFVYAMDVAKQYIATGAAKHVLVVGSESMSRAVDWTDRSICVLFG
                     DGAGAVVLSASDRQGIMGSVLHSAYDSDKLLVLRNSTFEQDRATIGMRGNEVFKIAVN
                     IMGNIVDEVLEASHLKKSDIDWLIPHQANIRIIQAIAKKLSLPMSHVIVTIGNQGNTS
                     AASIPLALDYSIKNNQIKRDEILLIESFGGGMTWGAMVIRY"
     gene            2242..3189
                     /gene="fabD"
                     /locus_tag="JBH85_07000"
     CDS             2242..3189
                     /gene="fabD"
                     /locus_tag="JBH85_07000"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HAU0945945.1"
                     /translation="MVKSAFVFPGQGSQSIGMLSDFMPQYTVVTDAFAEASDALGYDL
                     WDLVQNGPETKLNQTEYTQAAMLTADVAIYRLLMQLGVPQPQVMAGHSLGEYAALVCA
                     NSLSLKDAAQLVARRGQVMQNAIPLGEGAMAAIVGLSDEQVRSLCEQASTANHLVTPA
                     NYNALGQIVVAGHRVAVDKLIQLAEEAGARLAMIIPVSVPCHCPLLKNAAELFAEDLA
                     QIEFQVPSVDVISNVDLSIYHSTQHIRDKLKEQLYSPVRWVETVQLIQQRGIDLVVEC
                     GPGKVLNGLIKRIERNLTTISVYDTISLDQVIERLHIPV"
     gene            3201..3947
                     /gene="fabG"
                     /locus_tag="JBH85_07005"
     CDS             3201..3947
                     /gene="fabG"
                     /locus_tag="JBH85_07005"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HAU0945946.1"
                     /translation="MINLEGKIALVTGASRGIGRAVAEKLARNGAFVFGTATTEQGAA
                     SINSFFEKEKLAGKGIVLDVTSTEQVENLMSTLSDNDQCPSILVNNAGITADNLLLRM
                     DDDEWYKVIETNLNSIYRMTKACLKPMFRARWGRIISIGSVVGASGNSGQVNYTAAKA
                     GVIGFSKSLAQEIGSRGITVNVVAPGFIDTDMTTALPDMVKEEMLKRIPMRKLGQPED
                     VADAVAFLASDSAKYITGETIHVNGGMYMS"
     gene            4032..4280
                     /gene="acpP"
                     /locus_tag="JBH85_07010"
     CDS             4032..4280
                     /gene="acpP"
                     /locus_tag="JBH85_07010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006871648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAU0945947.1"
                     /translation="MSTVEERVRKIVVEQLGVKEEELKNDASFVDDLGADSLDTVELV
                     MALEEEFETEIPDEKAEKITTIQEAIDYIESNLNKEEA"
     gene            4300..5538
                     /gene="fabF"
                     /locus_tag="JBH85_07015"
     CDS             4300..5538
                     /gene="fabF"
                     /locus_tag="JBH85_07015"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HAU0945948.1"
                     /translation="MNSRRVVITGMGMLTPVGLNVEETWRSILAGVSGVGLVEDFDTT
                     EYPTKIWAKVKNFNVENHMPIKDARKMDVFTQYGMAAADEAMLDSGLKIDEVLSRRIG
                     VAVGAGIGGIQTITNNQDKLVAGGPRKVSPFFIPAGIINMVAGQISIKHNLKGPNISV
                     VTACTTGTHNIGLAGRIIAYGDADVMICGGAEMTTTPLCLAGFSAVRSLSKRNDEPEK
                     ASRPWDKDRDGFVMGEGAGVLVLEEYEHAKARGAKIYAELVGFGMSGDAYHITAPDED
                     ADGASRAMEAAIQDAGIDPRQVDYINAHGTSTYLNDLNETKAIKRVFQNHAYDLAVSS
                     TKSMTGHLLGAAGAVEAIISILAIRDQVAPPTINLDNPDEGCDLNYVAHVPQSRTINY
                     VLSNSLGFGGTNGSLLFKRI"
     gene            5539..6537
                     /gene="mltG"
                     /locus_tag="JBH85_07020"
     CDS             5539..6537
                     /gene="mltG"
                     /locus_tag="JBH85_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HAU0945949.1"
                     /translation="MQFSRHKKLVILVLSLFFMSFLFLFWNIYRLLYTPIIPKTASPM
                     ILALDKATSAYQFAYILQDKKLIHSAKFFLLIIRFEGLSHQLKAGVYQITPGETAMKL
                     LHRVVAGDVITQNFTIIEGSTQQKVDYDLRQANYLKYNPEDWAIVKENYPSAEGLLLA
                     DTYQYQGGSSSRALLEQAHRNLLNYLNTSWANRSPNLPYKTPYELLIAASIIEKETAI
                     AQEKKLISGVMVNRLKKKMPLQMDPTVIYGLGNQYKGKLTHNDLLIQSPYNSYLNRGL
                     PPTPIAMVGKEAIDAAAHPQLSNYLYFVAKGDGTHQFSETYEQQRQAINQYRRKDY"
     gene            6537..7175
                     /locus_tag="JBH85_07025"
     CDS             6537..7175
                     /locus_tag="JBH85_07025"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HAU0945950.1"
                     /translation="MSSLTGKLIVIEGLEGAGKSTAVNLVVELLSQKKISTITTREPG
                     GTKIGEILRSIIKNPEYNNVLDDRSELLLLYAARIQLIEQVIKPALNVGQWVIADRFE
                     LSTLAYQGGGRKMDMRVINELSNFCLKGFKPDLTLYLDINPELGMIRAKSRGKFDRIE
                     QESIEFFHRIHDTYHILVKQNPEIIMIDANRSLEEVQSSIQSVIEEFIEHNL"
     gene            7172..8077
                     /locus_tag="JBH85_07030"
     CDS             7172..8077
                     /locus_tag="JBH85_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HAU0945951.1"
                     /translation="MITYQEQWQKMQMALAIRRIPQAMLFSGSLHCGLIEFTNQVIKL
                     LLCKIKQNEPCLTCMDCQMIERFEHPDVEWIKPERSGGIIKIDQIRGLQSTAFLTPQR
                     TNHKLIIIESAESMNIAASNALLKILEEPAQHTIFILLAQQIGNIPPTVLSRCQITQF
                     AVFDELPCNNLLALGEYYTQELNSTMVFKHSESILEGLIAIIERREHPCTLAAQWIQH
                     ELSAFLWFLYLIYSQLQYMHLFRVAYSGTLTKQLNKLSSLLNPVMIFAQVDKINTLLR
                     KLSHNMNINHTLVLEDLLFSLVVDY"
     gene            8204..8545
                     /locus_tag="JBH85_07035"
     CDS             8204..8545
                     /locus_tag="JBH85_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilZ"
                     /protein_id="HAU0945952.1"
                     /translation="MTEKPQIINCSFPNEASLYMAYMPFVKGGGLFIRTQHVYSLGQS
                     LELSVKLLNENEPYLVTGKIVWITPKGAQGNKPPGVGIQFTGENSRYLCNKIETYLAG
                     MLKSCQVTDTI"
     gene            8577..9389
                     /locus_tag="JBH85_07040"
     CDS             8577..9389
                     /locus_tag="JBH85_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family deoxyribonuclease"
                     /protein_id="HAU0945953.1"
                     /translation="MILFWGIKVLVDSHCHLNFIDLTHFNHDLAQVINQARENGVEYF
                     LSVCVELSDYPQLERLAKDYPDISISVGVHPNSEMNYPVTAQMLCELAQNPACIAIGE
                     TGLDYYRNPTEEAQSLQRDRFREHIKAALITSKPLIIHTRQAAEDTLLMMAKEGASQI
                     GGVMHCFAEDFDIAQRAIDLNFYISFSGIVTFKNAVSLQDVARQIPLERILIETDSPY
                     LAPVPHRGKQNHPALVKHVAETIAQLRGMDFQEIAEITTNNFYNCFNIKRQG"
     gene            9501..10601
                     /locus_tag="JBH85_07045"
     CDS             9501..10601
                     /locus_tag="JBH85_07045"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HAU0945954.1"
                     /translation="MSLYIGLMSGTSMDGIDAALLELPSNHLIHGITKQYSDDVRRNL
                     DDLIMGNHLTLASICQLNTLIGREFAEAVRQLLSEIKVHPKEIQAIGSHGQTVCHDTS
                     GNIPYTLQLGCGHTISSLTGITVVADFRTRDLVNGGQGAPFAPLYHQQIFSKVNESVA
                     VVNIGGIANVTFIAKNQMTRGWDIGPGNCLMDAWIYKNKGALFDKSGVWASQGEVIYP
                     LLEYLLQDPFFHLDSPKSIGKEYFSLSWLQKHLKPDYTPADIQATLLALTAHTIAETI
                     LNESGEIKQLYLCGGGAHNTHLKENLARLLPGIAVKSIAELGISPDYLEAMMFAWLAA
                     QTINQIPVNLTSITGAKGIAILGAVYPIIKSY"
     gene            10657..11949
                     /locus_tag="JBH85_07050"
     CDS             10657..11949
                     /locus_tag="JBH85_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945955.1"
                     /translation="MTAHYNVASNSGARNTLATSYFIFFLAASFYLYEFILQVAPSVM
                     AESMMKTFGVTGQGFGVISAFYFYAYAPTQLPAGVLYDRYGPRKLMTFAIVLCAFGSA
                     FFASTDSVFTACIGRFLIGIGSAFSFIGVLVLISRWFPPYYFAILAGVAQLMSSVGAM
                     FGEMPLAALIDLVGWRSASFILAGVGFLLAILFWVFIRDYPHQQNQTIPDHYLRDEWK
                     RLVAVCKHAYTWIIGGYAFAIWTPIAVFAALWGVPFLQEKFQVSVVAASGLCSMIWLG
                     IGVGSPLLGWLSDKLESRRIALIISAVLGLIATLIILYWSELSYNWAYFVLFVLGLGA
                     GGQTVSFAVVKENNTPELVGTASGFNNLSVLIGGAIFQPLVGYILQQTGSWRIVNGAH
                     VYSISSYQTALLVMPVCFLASLLIATFLLKESHPARRD"
     gene            complement(12025..13305)
                     /locus_tag="JBH85_07055"
     CDS             complement(12025..13305)
                     /locus_tag="JBH85_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945956.1"
                     /translation="MSEPLIKISYRQAIIFACFLVLYEFLTYIANDMIMPGMINVVKS
                     FNAHESVVATSLTVYVLGGASLQLILGPLSDAYGRRPMMLIGSCLFFLFTLLIASSHS
                     MNQFLIARFFQGMGLCFIGVIGYATIQEIFEEMDAIRLIAIMANAAILAPLLGPLLGA
                     IIIHYTSWRLIFIIIALGALLAYWGLWRFMPEPIGQVKRDGQLIPKTPFALNAITRNY
                     KTLLSNQAFCYSAIAEGLVGIPCIAWIALAPIILIAEAKLTVIQYGLWQLPIFGATIL
                     GNWCLHHLTYKYKIERIIFIGCIIMVVGLALTALLPYFYGNNYVYLIPGIIIYFFSLS
                     VINAPLNRYCLFVTAVSKGTASALISLSIMIIGAIGIEIANLFYQHHNNLHFAFYCNA
                     VGLLFLIFIGLTFFIGTPKKSEIHDEANSNVANS"
     gene            13527..14702
                     /locus_tag="JBH85_07060"
     CDS             13527..14702
                     /locus_tag="JBH85_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAU0945957.1"
                     /translation="MISMPKEKVVIIIPTYNEEDNISNTIDLILKETYSLADYQVDIL
                     VFDSHSTDSTAHIVRELTYTSQRIHFAQEPQKTGLGSAYLQAMRIAIDELNADVVFEF
                     DADGSHQPCYIAPMLELLKQHDVVVGSRYISGGRIPSNWAFHRKLLSVGGNWVARMLL
                     TGKYKDLTSGLRAIRTNLLKKLLPSNFLSNNYAYKLELYWLLHKAKARIVEFPIQFID
                     REKGKSKLPKNSMIDTLRVLFTLRFRELRQYLTMCCVGSIGALIQFSLYNWLRSSNHS
                     ALVSSQVAISAAIISNFIFHHSITFKQKTDFRITKTTFSRFTQFIIYSTFMVYFQSLW
                     VHIFVHSFGQGVLKENIIVASGLGIGSIINYLFYSNIIWSSKGTHSLNSNSSKETQI"
     gene            complement(14739..16124)
                     /locus_tag="JBH85_07065"
     CDS             complement(14739..16124)
                     /locus_tag="JBH85_07065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HAU0945958.1"
                     /translation="MFLHMNRYISLYFLLILLIAPIHLLGLDSYYYWDWSRHLALSYY
                     DGSPMIAYFIRIATLLFGDTLFALNLVTIVSTALTSFIIYKTARLCLNKEASYVTVLI
                     WLFSPLVTLDLINQTTYDTPLTLFWALTLYFTIRYIQFNRNQDLYYIGLSIGLMLLSK
                     YSGIVLVLALLVFLVATPYRRLFKSRHFYLALTLAIIVFSPVILWNAQHDWVSIRYQL
                     STHQSQNTHHAMGGILHAFFNFFLPAINFLFIPPALYLSKGTPRKSPVFYLCLIICVT
                     FVLFYLFVAGKATIRAYWLSQYIITASLLAGYCYQEWAYRNSTYLLIVFYVLTSGIIL
                     MNNTTLFSFGYSKKLAYYQSIQQINQSNDKLPSIVITPGWFEARMLFFLKNKPTIFTF
                     DCGSMQNQYRYWSPNLNTLGEVLYIDTFDRLSCVKKYFAQCQSLNLPAAFDEKGKPII
                     YAYWCSNKLDT"
BASE COUNT         4998 a         2743 c         3416 g         4982 t
ORIGIN      
        1 ttcccgcttt atgaatgcaa tttgtttagg agtaatacaa tggccgtaca acaaaataaa
       61 aaatcacgct cacgtcgtga tatgaggcgt tctcatgatg cactaaccaa gcctactcta
      121 tcagtagatc caacaactgg tgaaacccat cttcgtcatc acatgacccc agatggatat
      181 tacagaggca aaaaaattat tgacgctgaa accgcttacg aacaagagta actttcttga
      241 agaatatcac cattgcaatt gacgcgatgg gtggggatca cggcttggaa attgtgattc
      301 ctgcctgtat tcgtgctatt aaaaacaacc ctgatttgaa actattgctt gtaggagtcc
      361 aggacaagat cagtgcttct ttgaaaaaac atggcatgtt gtcctgtcag caatttacta
      421 tcgtccacgc atcagaagtg gttacaatgg atgaattgcc atctcatgca ttacgaaata
      481 aaaaagattc ctcaatgcga atagcaatta acctggttaa ggaaggcaga gcgcaggctt
      541 gcgtcagtgc gggcaataca ggtgccttaa tggctaccgc ccgatatgtc ttaaagactt
      601 taccggggat tgatcgccca gcaatagtat ccgagttacc taccatgggt ggaaaaacaa
      661 gagtcattga tttgggagcc aatgttgatt cttgcgcaga gcatttgttt cagtttgctg
      721 tgatggggtc tgcattgata caggcaatag aaaataaacc caaacctaaa attggtttac
      781 ttaatattgg cgttgaagaa attaagggta atgatcaggt taagcgtact gcacatatgc
      841 tggctgagtg ttctgttatg aattatgtgg gatacgttga gggtgatcac ttttacagtg
      901 gtgatgttga tttagtggtc tgtgatggat ttgttggaaa tgtggcatta aaagcaagtg
      961 aaggtttggc aaagctttta ttaactgtcc ttaaagaatc atttagcaga aattggttaa
     1021 caaaaattgc tggtttgatt gctttaccag ccttaaaaca tttaaaaaat cgtttggatc
     1081 catcgcgata caatggtgcc agtctactcg ggttgaatgg tatcgttgtc aaaagtcatg
     1141 gtggagccaa tgaagtgggt tttcaacatg ctattgaaca ggctgttctt gaagtaaaaa
     1201 ataatgttgt cgatttagtg cgtgatcaaa taaatgattt tataaatcaa ggattgttgt
     1261 tatgaaaaat gctgttatta atggcactgg aagttactct ccagagagac aaatgactaa
     1321 tgctgaactg gaaaccatgc ttgatactag cgatgaatgg attgttacca ggactggtat
     1381 tagtagccgt agtgttgctc aagaacatga aacaacatct tatatggctt ccagagcagc
     1441 agagcaagca ctagaggcat caggccttga tgctgaagaa attgatttga tattagtagc
     1501 aacatgtacc ccagattatt tttttcctag cgttgcctgt cacgtacaac atgctttagg
     1561 aatcaaaaga cctattccgg cttttgacat tggagctgca tgcagcggtt ttgtttatgc
     1621 gatggatgta gcgaaacaat acattgctac aggggctgcc aaacacgttc ttgtcgtagg
     1681 cagcgagagc atgtcaagag cggtagattg gactgatcgt tctatttgtg tcttattcgg
     1741 agatggcgca ggcgctgttg ttttaagcgc aagtgatcgc caagggatta tgggtagtgt
     1801 tttacattct gcctatgact ctgataaatt actagtcctt cgtaattcaa cttttgaaca
     1861 agatcgtgca acgattggaa tgcgaggtaa tgaggtattc aaaattgctg ttaatattat
     1921 gggtaatatt gttgatgaag tattagaagc aagtcattta aaaaaatctg atattgattg
     1981 gctgatacct catcaagcca atatacgcat catacaagcc atagctaaaa aattatctct
     2041 tcctatgtca catgttattg ttacaattgg taaccaaggt aacacatcgg ctgcttctat
     2101 tcccttagca cttgattatt ctattaaaaa taatcagatt aaaagggatg aaatattatt
     2161 aattgaatcc tttggtggtg gaatgacctg gggcgctatg gttattcgtt actaaattaa
     2221 ctaataagga ttaattctat tatggtaaaa tcagcatttg tatttcctgg acagggatcg
     2281 cagtctatcg gcatgttgtc tgactttatg ccacagtata ctgttgtcac cgatgctttt
     2341 gcagaggcct cagatgcttt gggctatgat ttgtgggatt tggttcaaaa tgggccagag
     2401 acaaagctaa atcagactga atacacgcag gctgccatgt taactgctga tgttgcaatt
     2461 tatcgtttat taatgcaatt aggcgtacct cagcctcaag taatggctgg tcatagtttg
     2521 ggggaatacg ctgctttggt ttgcgctaat tctttatctt taaaggatgc tgcgcagtta
     2581 gttgctcgta gaggacaggt gatgcaaaac gcgatccctc tgggagaggg ggctatggct
     2641 gccatagtag gcttatctga tgaacaggtt cgttcattgt gtgagcaggc cagcacagcc
     2701 aatcatcttg ttaccccggc gaattataat gctctgggcc aaattgttgt tgctggacat
     2761 cgagtagccg ttgataaact aatacaattg gctgaagagg ctggagccag actggcaatg
     2821 ataattcctg taagtgtgcc ttgtcattgc cccttattaa aaaatgctgc cgaattattt
     2881 gctgaagatc ttgctcaaat tgaatttcaa gttccttcag tcgatgtaat aagcaatgtt
     2941 gatttaagta tttatcattc cactcaacat ataagagata aactcaaaga gcaactatac
     3001 agccctgtgc gctgggttga aacagttcag ttaattcaac agcgcggaat tgatctggtt
     3061 gtggagtgtg ggccaggaaa agttctgaac ggtttgataa aaagaattga gagaaattta
     3121 actacgatta gcgtttatga caccattagt cttgatcaag tcatagagcg tttacatatc
     3181 ccagtttgag aggaaactag atgatcaatt tagaaggtaa aattgcatta gttactggtg
     3241 ccagccgtgg cataggtcgt gctgttgccg agaaattggc aagaaatggt gcctttgttt
     3301 ttggaacagc aaccactgaa cagggtgctg cgtctattaa ttcttttttt gaaaaagaaa
     3361 aattggctgg taaaggcatc gttttggatg taaccagcac tgagcaagta gaaaatttga
     3421 tgtctacctt gtctgataat gatcagtgtc cttctattct tgttaataat gctggcatta
     3481 ccgcagataa cctgttattg cgtatggatg atgatgaatg gtacaaagta atagaaacaa
     3541 atttgaattc tatttacaga atgactaaag cttgcttaaa acctatgttc agagcgcgtt
     3601 ggggaagaat aatttctata ggctctgtgg taggtgccag tggcaattct ggacaggtaa
     3661 actatactgc agccaaggct ggagttattg gtttttccaa gtctttggca caggaaattg
     3721 gtagtagagg aataactgta aacgtggtag cccccgggtt tatcgacaca gatatgacta
     3781 ctgcattgcc tgatatggtg aaagaagaaa tgttaaaaag aattcccatg cgtaagctgg
     3841 gccagccaga agatgttgct gatgctgtag cttttctagc atcagacagc gcaaaatata
     3901 tcacaggtga aacaattcat gtcaatggcg gtatgtatat gagttaaatg cacttgcgtt
     3961 atctgtataa ttgaataaac tagccgtcag tatttaataa tttctatcaa ccgaaagagg
     4021 aaaattacgt tatgagtaca gttgaagagc gtgttcgcaa aattgttgtt gaacaactgg
     4081 gtgttaaaga agaagaatta aagaatgatg catcctttgt tgatgatttg ggtgctgatt
     4141 ccctggatac agtagaattg gttatggctc ttgaagaaga atttgaaaca gaaattcctg
     4201 atgaaaaagc tgagaaaatt actacaattc aagaagcaat tgattatatt gaatctaact
     4261 taaataaaga agaagcttaa tttttttaag gagctctcat tgaatagtcg gcgtgtggtt
     4321 attaccggca tgggtatgct tactcctgtc ggacttaatg tagaagaaac ttggcgaagt
     4381 attttagctg gggttagtgg ggtaggtttg gtggaagatt ttgatactac tgaataccca
     4441 actaagattt gggctaaggt caagaatttt aatgttgaga atcacatgcc aattaaagac
     4501 gcccgcaaaa tggacgtctt tacacaatat ggtatggctg ctgctgatga agcgatgctt
     4561 gactcgggtt taaaaattga tgaagtctta tctcgtcgaa tcggtgtcgc agtgggcgca
     4621 ggtattggtg gtattcaaac aatcacaaat aaccaggata aactggttgc cggtggacca
     4681 cgtaaggttt cgccattttt tattccggca ggtattatca atatggttgc tggacagatt
     4741 tctattaaac ataatttaaa aggacctaat atttcggttg tgactgcatg tactaccgga
     4801 acacataata tcgggctagc cgggcgtata attgcttatg gcgatgccga tgtcatgatt
     4861 tgtggtggag cggaaatgac cacaacgcca ctttgtcttg ctgggttttc agcagtaaga
     4921 tctttatcca aacggaatga tgagcctgag aaagcctcaa ggccttggga taaagacaga
     4981 gacggttttg ttatgggtga gggtgctggt gttttggttt tagaagaata tgaacacgct
     5041 aaagctcgtg gagccaaaat ttatgctgaa ttggttggtt ttggtatgtc aggagatgct
     5101 tatcatatta ccgcacccga tgaagatgcc gatggagctt cacgagctat ggaggcagcc
     5161 atccaggatg ctggtatcga tcccagacaa gttgattata ttaatgctca cggtacgtcg
     5221 acttatttaa acgatttaaa tgaaacaaaa gccattaagc gtgttttcca gaaccatgct
     5281 tatgatctgg cggttagctc aaccaaatcc atgacaggcc atttgctcgg agctgcaggt
     5341 gcagtagagg caattataag tattttagcc ataagagatc aggtggctcc acctacaata
     5401 aatttggata atcctgatga aggttgtgat ttgaattatg tagcacatgt accacaaagc
     5461 agaacaatta attatgttct aagtaattca cttggttttg gtgggacaaa cggtagctta
     5521 ctgttcaagc gaatctaaat gcaattctct agacataaaa aactggttat tcttgtttta
     5581 tccttgtttt ttatgtcttt cttgttttta ttttggaata tatatcgctt attgtataca
     5641 ccaataattc cgaaaactgc ttctccaatg attcttgcct tggataaggc gacgtccgct
     5701 tatcaatttg cttatatttt gcaagataaa aaattaatac attctgccaa attttttcta
     5761 ttgattattc gttttgaagg attatcgcat cagttaaagg caggcgtgta tcaaattact
     5821 cctggcgaaa ctgcaatgaa attactacat cgagtagttg ctggtgatgt aattacgcaa
     5881 aattttacga tcatcgaagg atctacacag cagaaagtag attatgacct aagacaggct
     5941 aattatttga aatacaatcc agaagattgg gcaatagtaa aagaaaatta cccaagtgca
     6001 gaggggttac ttctagcaga cacttatcaa taccaaggtg ggagtagtag tagggcatta
     6061 ttagagcaag cccatcgtaa tttattaaat tatcttaata ccagttgggc aaacagatca
     6121 ccaaatttgc cttataaaac tccttatgag ctattgattg ccgcgtcaat tattgaaaaa
     6181 gaaactgcaa ttgcacaaga gaaaaaattg atttctggtg tgatggtaaa caggttaaag
     6241 aaaaaaatgc cattacaaat ggatcctacg gttatctatg gactgggaaa tcaatataaa
     6301 ggaaaattaa cacataatga tttgctaatt caatcaccat ataattctta tttgaataga
     6361 gggttgcctc ccaccccaat agctatggtt ggcaaagagg ccatagatgc cgctgcacat
     6421 ccgcaattgt ccaattattt atactttgtt gccaaaggag atggtactca tcaattctcc
     6481 gaaacttatg agcaacaaag acaagcaatt aaccaataca gacgcaagga ttattaatgt
     6541 catcgttaac cgggaaattg atagttattg aaggtttgga gggagcagga aaatctacag
     6601 ctgtcaattt agttgttgaa ctgttatccc aaaaaaaaat cagtactata accacgagag
     6661 aacccggagg aacaaaaata ggtgaaattt taagaagtat tattaaaaat ccagagtaca
     6721 ataatgttct ggatgacaga agcgaattac ttctcctgta tgccgcaaga atacaactga
     6781 ttgagcaagt gatcaaaccc gctttaaatg tggggcagtg ggtcatagct gatcgatttg
     6841 agctttccac tttagcttat cagggagggg gccgcaaaat ggatatgcgg gttattaatg
     6901 agctatcgaa tttctgttta aaaggattca aacctgatct tactttatat ttagacatta
     6961 atcccgagct tggcatgata agagccaaat caaggggaaa atttgacaga attgagcagg
     7021 aatctattga gttttttcat agaatacatg atacatatca tattcttgtt aaacaaaacc
     7081 cggaaattat aatgattgat gctaacaggt ctttggaaga ggttcaatct tccattcaat
     7141 cagtaatcga ggagtttata gagcataacc tatgattact tatcaagaac aatggcagaa
     7201 aatgcaaatg gccttggcga taagacgaat tcctcaagcc atgctatttt cgggttcttt
     7261 gcattgtggt cttatagaat ttacaaatca agtgatcaaa ttactcttgt gtaaaataaa
     7321 acagaatgag ccttgtttga cttgcatgga ttgccaaatg atagagcgtt ttgagcatcc
     7381 ggatgtggaa tggattaagc ctgaaagaag cggtggtatt attaaaattg atcaaattag
     7441 gggattgcag agtacggcgt ttctaacacc acagaggact aatcataaac ttataattat
     7501 cgaatcagct gaatcaatga atattgctgc atcaaatgcc ttattgaaaa ttctggaaga
     7561 gccagcgcaa catactatct ttattttgtt agcgcaacaa attggcaata taccccccac
     7621 cgtattgagc cgatgccaaa taacgcaatt tgctgttttt gatgagttgc cttgcaacaa
     7681 tttattggct ttaggagagt actatactca ggaattgaat agcacaatgg tcttcaagca
     7741 ttcagaatct attttagaag gcttgattgc aattattgag cgaagagagc atccatgcac
     7801 tttggctgca caatggattc aacatgaatt aagtgctttt ttgtggtttt tatatttgat
     7861 ctattctcaa ctacagtata tgcatttgtt tcgagtggct tattctggta cgttaacaaa
     7921 acaattgaat aagctatcct cattactcaa tccggttatg atttttgccc aagtagataa
     7981 aatcaatact ttgttaagaa aattaagcca taatatgaat ataaatcata cattggtctt
     8041 ggaagattta ttattttctt tggttgttga ttattaattg agtttaaagg aattaaacca
     8101 ttgagtgtaa accgagtttt ttattaagca actgaagtga gcaatatgat tagttaaaac
     8161 aggactattc aaggaggatg tctattgatt gaacggagga gttatgaccg aaaaaccaca
     8221 gattataaac tgctcatttc ccaatgaagc atctttgtac atggcttaca tgccttttgt
     8281 gaaaggtggc ggtcttttta taagaactca acacgtttat tctctagggc agtcgcttga
     8341 attatctgtt aaattgctca atgaaaatga accatatttg gtcactggta aaatagtctg
     8401 gattactcct aaaggtgcac aaggtaataa gccgccggga gttggtattc aatttaccgg
     8461 tgaaaacagt cgttatctat gtaacaagat agaaacttat ttggcaggaa tgctaaaatc
     8521 atgtcaggtt acagatacta tatagagttt tcatttattc atgaacaata tattcattga
     8581 tattattttg gggtataaag gtgctggtcg actctcattg tcatttaaat tttatcgatt
     8641 tgactcattt taatcatgat cttgctcagg taatcaatca ggctcgcgag aatggggtgg
     8701 agtatttctt gtctgtttgt gttgagttga gcgattatcc tcaattagag cgtttagcta
     8761 aggattatcc tgatattagc atttctgttg gagtgcatcc gaatagtgaa atgaattatc
     8821 ctgttacggc acagatgtta tgtgaattgg ctcaaaatcc tgcctgtatt gccataggag
     8881 aaacagggct tgattattat cgtaatccca ctgaggaagc tcaatctttg caacgagatc
     8941 gcttcaggga acatatcaag gcggcactta taacttccaa gccgttaatt attcatacca
     9001 ggcaagctgc tgaagatact ttgttgatga tggctaagga gggggctagt cagataggcg
     9061 gagtcatgca ctgttttgct gaagactttg atattgcgca aagagcaatt gatttaaatt
     9121 tttatatatc attttccggg atagttactt ttaaaaatgc tgtttcattg caagatgtag
     9181 ccagacagat acctttagag aggatattga tagagacaga ttcaccttat ttggctccgg
     9241 ttccacacag aggaaagcaa aatcatcccg ctttggtgaa acacgttgca gaaactatcg
     9301 cacaactcag agggatggat ttccaagaga tagcagaaat cactacaaac aatttttata
     9361 attgttttaa tatcaaacga caaggataaa tcattggtaa atcgtagttc tcaacttcaa
     9421 agcagaagca gtaatttttt tgcctgtgaa taaaggtttt agtagtattg atatatccta
     9481 ttgcaaattt agagtaatta atgagtttat atatcggttt gatgtccggt accagtatgg
     9541 atggcattga tgctgccttg ttggagcttc cttccaatca tttgattcac gggattacta
     9601 aacaatacag tgatgatgtc aggagaaatc ttgatgattt aattatgggt aatcatttaa
     9661 ccctggcttc gatttgccaa ctgaacacgc taattggcag ggagtttgca gaagcagttc
     9721 gccaactctt gagtgaaata aaagtgcatc caaaagaaat tcaggccatt ggcagtcatg
     9781 gtcaaactgt ctgtcatgat acaagtggaa atatcccgta tactttgcag cttggttgtg
     9841 gccatacgat ttcttcttta actggcatta ccgttgtagc agattttaga acaagagatt
     9901 tggtgaatgg tggtcaaggt gcgccttttg ccccccttta ccatcaacag atattttcta
     9961 aagtgaatga gtctgttgct gttgttaaca ttggtggtat tgctaatgtt acctttattg
    10021 caaagaatca aatgactaga ggttgggata tagggcctgg caattgtctg atggatgcct
    10081 ggatttataa aaataaagga gccctttttg ataaaagtgg ggtttgggcg agccaaggtg
    10141 aagtgattta tcctctgctt gaatatttgt tacaagatcc atttttccat ttggattcac
    10201 ctaaaagcat tggcaaagaa tatttttctt tatcctggct acaaaaacat ttaaaaccgg
    10261 attacacacc agctgatatt caggctactt tgttggcgct tacagcccat acgatagctg
    10321 aaacaatatt aaatgaatca ggagaaatta aacaattata tctctgtgga ggcggggccc
    10381 acaatacgca tttgaaagag aatttagctc gtctactgcc tgggatagca gtaaaaagca
    10441 tagcagagtt agggattagt cctgattatc ttgaggcaat gatgtttgca tggttagcag
    10501 cacagacgat taatcaaata ccagttaatt taacatcaat aactggagct aaaggtattg
    10561 caattttagg tgcagtgtat cctataataa aatcatattg acaaactaaa gaatcataag
    10621 gtttaatttc ataaaaatta acagagtgat tttaaattga ccgcacatta caacgtcgct
    10681 tcaaacagtg gagcaagaaa tacacttgca acgtcttatt ttattttttt tctagccgct
    10741 tcattttact tgtatgaatt catactacaa gtagcaccaa gcgttatggc agagtcgatg
    10801 atgaaaacct ttggggtgac gggtcaaggc tttggtgtca tttcagcttt ttatttttat
    10861 gcttatgccc ctacacaatt gccagcagga gtattatacg atagatatgg accacgcaag
    10921 ttaatgactt ttgcaatcgt tttgtgtgca tttggttctg ccttttttgc ttccactgac
    10981 agtgtattta cagcttgcat aggccgattt ttgatcggaa taggctctgc gttttctttt
    11041 atcggtgttt tggtccttat ttcacgctgg tttccccctt attattttgc aattctagca
    11101 ggggtagcgc agttgatgag ttcagtcggc gctatgtttg gtgaaatgcc gttggcagct
    11161 ttaattgatc tggttggatg gagaagtgcg agttttattt tagcgggtgt tggatttctc
    11221 ttggctattt tattttgggt atttattcga gattatcctc atcagcaaaa tcagacaatc
    11281 cctgatcatt atttaagaga tgaatggaag cgcttagttg ctgtctgtaa acatgcttat
    11341 acatggatta tcggtggtta tgcttttgca atttggactc ctattgcagt atttgctgca
    11401 ctttgggggg ttcctttttt acaggaaaaa tttcaagtaa gcgtagtggc tgcatcaggc
    11461 ttatgcagta tgatttggct aggcattggt gttggtagtc ccttattagg ttggttgagt
    11521 gataaattgg agagtcgccg tattgcattg attatcagtg cggttttagg actgattgca
    11581 actctgatta tcctttattg gtctgagtta tcttataatt gggcttattt tgtcttgttc
    11641 gttttaggat taggtgctgg aggacagacg gtaagttttg cagtagttaa agaaaataat
    11701 acaccggaat tagttggcac agcatctggt tttaataatt tgtctgtatt aattggtggg
    11761 gccattttcc agcccctcgt tggttatatc ttgcaacaga cgggatcatg gcgaattgtc
    11821 aatggtgctc atgtatacag tatatcgagt tatcagactg cgttgcttgt tatgccagta
    11881 tgcttcctgg ccagtttgct tattgccact tttttgctta aggaatcgca tcctgcgcgc
    11941 agagattaat aacagattta tcaattcaat tttgcgttat tgaccaaaaa caaaggaatc
    12001 agattatgta aatgtggcct gttcttatga gttagccaca ttactatttg cttcatcatg
    12061 aatttcagat ttcttgggag tccctataaa aaaagttaaa ccgataaaga ttagaaataa
    12121 taatccaacg gcattacaat agaaggcgaa atgcagatta ttgtgatgtt gataaaacag
    12181 gttagctatt tctattccaa tagccccaat gatcataata cttaggctga ttaatgctga
    12241 ggctgttcct ttgcttacag cggttacaaa taaacaatac ctgttcaagg gggcattaat
    12301 tacactcagt gagaaaaagt aaattatgat tcccgggatc aaatacacat aattattgcc
    12361 ataaaaataa gggagaagag ctgtcagagc aagtcccacg accattatga tacaacctat
    12421 aaaaataatt ctctcgattt tatatttgta agttaaatga tgtaagcacc agtttcctaa
    12481 aattgttgcc ccgaagatgg gtagttgcca aaggccatat tgaattacag ttaattttgc
    12541 ttcagcaatt aatatgattg gcgccagcgc aatccaggcg atgcatggga tccctaccag
    12601 accttcagca attgcactat aacaaaaggc ctgattagat aataacgttt tataatttct
    12661 ggttatagcg ttcagtgcga acggtgtttt aggtataagc tggccgtctc tttttacctg
    12721 gcctatgggt tctggcataa accgccataa tccccaataa gctaaaagag cacccaaagc
    12781 aataataata aaaatcaaac gccaggacgt ataatgaatg attatggctc ctaatagtgg
    12841 ccctagtaat ggggctaata ttgcggcatt agccatgata gcaattaatc ggatagcgtc
    12901 catttcttca aatatttctt gaattgtggc ataacctatc acaccaatga aacacaatcc
    12961 cattccctga aaaaaccggg cgattaaaaa ttgattcatg gagtgtgagc ttgcaatcaa
    13021 aagagtgaat agaaaaaata agcatgatcc tattaacatc attggtcttc tgccataagc
    13081 atctgatagt gggccaagta tgagctgcaa actggcccct ccgaggacat agacagttag
    13141 agaggtggca acaacacttt catgcgcgtt gaatgattta acaacattga tcatacctgg
    13201 catgatcatg tcattggcta tataagtcaa aaactcatat aaaactagga agcaagcaaa
    13261 gataatggcc tgtctgtatg aaattttaat tagtggctca gacatagcat taaccctgaa
    13321 tcaatcgttt ctaaaaggcg gtctatcagt atatacgttt atttcatgat ttggtagaaa
    13381 atctgataaa tgttttggta agcgacataa aatctgccat atactgagaa taaatcttta
    13441 caatagtaac tgccacttaa agtttgttta cggcaagccc accatttgat aagatttgct
    13501 tacttctata atctgcttct tatgatctga tcagtatgcc caaagaaaaa gtcgttatta
    13561 ttatccctac ctataatgaa gaagataata tttctaatac gattgatttg attcttaagg
    13621 agacatactc actcgcagat tatcaggttg acattcttgt atttgatagt cactctacag
    13681 attctacagc ccatatagtt cgagagctaa cttatacctc tcaacgtatt cattttgcac
    13741 aagaaccaca gaaaactgga cttggttccg cttacctgca agctatgaga attgcaatag
    13801 atgagttaaa tgcagatgtt gtatttgagt ttgatgcaga tggttctcat caaccttgtt
    13861 atattgctcc aatgttagag ctacttaaac agcatgatgt agttgtgggg agccgatata
    13921 tttcaggggg aaggattccc tcaaactggg cattccatcg taaattatta tctgtgggag
    13981 gtaattgggt tgctcgtatg ttattaactg gaaaatataa agatcttact tctggcttaa
    14041 gggcaatacg taccaatctg ttaaagaaac tattgccttc aaacttccta tccaataatt
    14101 acgcatataa acttgagtta tattggcttt tacacaaggc aaaagccagg atcgttgaat
    14161 ttcctattca atttattgat agagaaaaag ggaaaagtaa attacctaag aacagtatga
    14221 ttgacacctt gcgtgttctt tttacccttc gcttcagaga attacgccag tacctaacta
    14281 tgtgttgtgt gggctctatc ggtgcattga ttcaattcag cttatacaat tggttgcgca
    14341 gttcgaacca ttccgctctg gtatccagcc aggttgctat cagtgctgct attatatcca
    14401 attttatttt tcaccattcc attacattca aacaaaaaac tgacttccgg ataactaaaa
    14461 caacatttag ccgttttaca caatttatta tttattccac atttatggtt tattttcaaa
    14521 gcctatgggt tcatattttt gtccattcct ttggacaagg tgttttgaaa gaaaatatca
    14581 ttgtagcctc aggcttgggt attggatcta ttatcaatta cctgttttat tcaaatatta
    14641 tttggtcatc aaaaggcact cattccctca attcaaactc ttctaaagaa actcaaattt
    14701 gaaagcaaaa gaaattgggg gcataagtcc tgtttcattt aagtatccag cttattactg
    14761 caccaatagg cgtaaatgat tggcttacct ttttcatcaa aagcagctgg caaattcaat
    14821 gattgacact gggcaaagta ttttttaaca catgataatc tatcaaatgt atcgatatat
    14881 agcacttcgc caagggtatt cagattaggt gaccagtacc tgtattgatt ttgcattgaa
    14941 ccgcagtcga aggtaaaaat tgttggttta tttttaagaa agaacagcat gcgtgcctca
    15001 aaccatccag gagttatgac tatgcttggg agtttatcat tagactgatt aatttgctgt
    15061 atcgattgat aataagccaa tttttttgaa tacccaaaac taaaaagagt agtattgttc
    15121 atcaaaatga ttccactggt aagaacgtag aatacaatta ataaataagt ggaattacga
    15181 taagcccact cttgatagca ataaccagct aataagctgg cagtaattat gtattggctc
    15241 aaccaatatg ctcttatcgt ggctttgccg gcgacaaata aatagaaaag aacaaatgtt
    15301 acgcaaataa tgaggcacaa ataaaataca ggggattttc taggggtgcc tttggataga
    15361 tataacgcag ggggaatgaa caaaaagtta attgcaggga ggaaaaaatt aaaaaaggca
    15421 tgcaagatac cccccatcgc atgatgagta ttttgcgatt ggtgagtact taactggtag
    15481 cgaatggata cccaatcatg ttgagcattc catagaataa ccgggctgaa gacaatgatt
    15541 gccagggtta atgccaaata aaaatgcctg gatttaaaaa gccgcctata gggtgttgca
    15601 accaaaaaaa caagtaaggc cagcacgaga acaattcctg agtatttgga taaaagcata
    15661 aggcctatac tcaaacctat gtaatacaaa tcctggtttc gattaaactg gatatacctt
    15721 attgtaaagt aaagagttaa tgcccaaaaa agggttaaag gcgtgtcata ggtagtttga
    15781 ttgatcaaat ctaaagtgac taatggtgag aataaccaaa tcaaaaccgt aacataactg
    15841 gcttccttat taaggcataa tcttgctgtt ttataaatta taaaactggt caaggcagta
    15901 gaaactatag taaccaggtt taaagcaaag agagtatctc caaataaaag tgtagctatg
    15961 cggataaagt aggcaatcat gggagaacca tcatagtatg atagagccaa atgcctgctc
    16021 caatcccagt aataataact atctaatcca aggaggtgaa ttggtgcaat taatagaatg
    16081 agtagaaaat agaggctaat gtagcgattc atgtgcaaaa acattcagta ttcccagga
//
LOCUS       DACVWI010000060        16132 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.060, whole genome shotgun sequence.
ACCESSION   DACVWI010000060 DACVWI010000000
VERSION     DACVWI010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16132
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.060"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..860
                     /locus_tag="JBH85_07070"
     CDS             <1..860
                     /locus_tag="JBH85_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0945959.1"
                     /translation="ILDKNSKNEFLYNSPNILILEDNLVARRTIESLATQEKCRFVSV
                     AKGKEAIRLAKTNEFDLIITDIGLPDIEGHVVAKLIREWELSQSKPPIPIIGLTAHVK
                     EKSKEICLKSGMDDVFNKPISRQLLQYILSRFIPSKNKNSTSCSSQKTTSSEQIIEAD
                     LPESESNFFNLDSYPLLDIHNAVSIMGSLKLVREILPLMIGEETQKDVESIEKAFHIK
                     DWETVERIAHKMKGGAANCGAVRMKYACQYLERYQKMGYTKLLEPLYQQLIKVVEDTQ
                     KNIHEWLKH"
     gene            1032..1940
                     /locus_tag="JBH85_07075"
     CDS             1032..1940
                     /locus_tag="JBH85_07075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0945960.1"
                     /translation="MSDEISKEYFDETLGIHQEYLGILNCLPDIVYWVDKDCLLKGCN
                     QNFIKLLGLKKIKDLKGTPYEQMAKYTGWPEKNIEAFKLDDMKVLFSGEPQWDVEEGP
                     LFNKDKEVSYYRTRRVPLFDKDNKVYGLVVVLTDITKFKKMEEQLQKVATKEKIKPSP
                     AKRIEEPKILMVEDNFVAQKVEEALLKELQCQVDIADTGDKALNLFDPGKYDMVFMDI
                     GLEDTSGYLVAKKIRQKEQNTNYHVPIIALTSYQADVVKYDVEDYFMDGVLTKPLTSE
                     QADQLIKHFVHKEDIMVSGLKSAREN"
     gene            2204..2983
                     /locus_tag="JBH85_07080"
     CDS             2204..2983
                     /locus_tag="JBH85_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0945961.1"
                     /translation="MILENEVIWDPERYVLGNYIQNKINDVFLKTIHSKLSGNILDIG
                     CGDGHYTSLLAGKVKHGQILGIDSSEQMIMHANQQWARTGLSFEVHNIEEFHQPQSFD
                     LVLSFWCLHWTNIHISFPNIFHLLKREGKLYAVMSSFSDHSILQTWKELAKQNLYRDL
                     TKQYISPINEQYFYGVINLLNRLPFKRIKLDLKTCRVHLPHIDYYKNLLLTMPFIKRV
                     PSEITDTLVEDMLKAFQTICDRKYGGELYYETRPIFLEAIK"
     gene            2990..4042
                     /locus_tag="JBH85_07085"
     CDS             2990..4042
                     /locus_tag="JBH85_07085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945962.1"
                     /translation="MLGGNTVHLNFNTTPGMNIPMVIASQDNLKASPTPLLHFISEYH
                     DEIIQKLNQYGAIVLRGFSCQEENCFSKAIELCALGTRCSTSDYDLPRTVLANEIYTS
                     SDLPADIPLPLHHEKPRSPKPPNHIYFCCIIPPQEGGGTIFANAEEIWIDMPQGIQNK
                     ILEYGVQYKQFFHGQSVKYRVLRKILGNHCARSWIDYFGTEDKTQIEQNLTQKQVVWD
                     WINHGIDLIIINYLPGALKHPLTDKMAWFNSSAYLNYYSNLNYGELKNLRSFKYWASR
                     YLILKDMLPMICHYGNGQAFSAKEISEINQVIQRHTRVFHWQKGDFMIVDNFTFMHGK
                     QAHVGERLLYSCMTAY"
     gene            complement(4143..5549)
                     /locus_tag="JBH85_07090"
     CDS             complement(4143..5549)
                     /locus_tag="JBH85_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010946384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISLpn6 family transposase"
                     /protein_id="HAU0945963.1"
                     /translation="MASCEWIINESKEANFGDKRLDKRYGDILSGLLSSPNASIPTTF
                     QSWNETLAAYRFFNHVNVNPESILLPHSEATLERIKAEKIVLIPQDTTEVDFTGRKSL
                     SGMGYLSNERSRGLYLHPSIAFTPERVCLGVVEMQHWIRKEIGTRNSRKGKSIEEKET
                     YCWLKGYNAANKIALAVPDTMVVSISDREGDIYEVLEKLPSEENKAYWLIRCQHDRAV
                     LNEETNQFELLLKKEVSKACVLGTIEFEIPAGTSYRNCKKRHTRKARSVRQEIRICSV
                     SLRPPRRKSKKLNVIEIQVVHCKEINTPEGEQPVEWFLITSVPIKTLDRAVEIVNWYL
                     CRWLIEMYIKILKSGCKIEELRFETYEATLNCIAFYMIVAWRVFYLTMLGRTCPDIDC
                     TTVFEDNEWQATYAMATKKKPPKKPPKLYEIILMIAKFGGHLGRGSDGFPGTKVMWIG
                     LQRMKDFTLAWETFHTLS"
     gene            complement(5615..5794)
                     /locus_tag="JBH85_07095"
                     /pseudo
     CDS             complement(5615..5794)
                     /locus_tag="JBH85_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101705.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5800..>16132
                     /locus_tag="JBH85_07100"
     CDS             5800..>16132
                     /locus_tag="JBH85_07100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0945964.1"
                     /translation="MVNVTMKNKTKNLLNEPIAIIGMNCQFPGIDSDIEDISAFYDML
                     MKGQTPIKDVPENRWNIEEYYSADRKKADKIISKKGGFLDNTHLFDAAYFKISSAEAK
                     QIDPQQRLFLEVAIRALNDANIPLDSLKDSNSGVYCGISTHEYSQLNYKDHIKFNAYT
                     PIGIANSAAAGRLCHFLNLKGPSMAVDTACSSSFTALYLAATALRNQQCDMAIVGGVH
                     LSLCPESFIGLTKANMLSATGQCSSFDSKADGFVRSEGCGVVIVKRLTDAIRDNNKIY
                     ALIKSMVINQNGDGTGLAAPSTNAQIAMHQAALEHAHLTAGEIDYIETHGTGTTVGDP
                     VEFNAIQSIHQGHHSPQKPLIVGALKSNIGHTISSSGIASLIKVLCSLQNEAIPPNLH
                     YSNPNSLIDPESIPALLPVEAIPFLKLKNKKRYVQVSNFSFTGTNVSVILEEAPELES
                     HESKQDDNEPKCFVASANSELSLKQLMSRYEHYLKNSSSTLGDICHTLINCRDHYKFR
                     CAIIVNDKKELIKKIESKDYEIKKVVLQNNPRTVLNDAKAIYEAYLSGINISTDDKNT
                     AYNKVDLPLYCFDRKPYWHEVRKQVKNDHWLDSLYQQPIEQQVAIIKTELASQIKDLL
                     KKDNIDPHQDLETLGLTTSLLESLDQIFQDMFSPRYKVPSLQSLRYLTLDKLARHLQK
                     MIMPPVVYRQPSINVLNVEPIAIIGMSCRFPKAANVDEFLSLLEKGESGMIDIPLERW
                     DNEKFYDSDVDALGKLYIKQLGFIDHVNHFDAEFFNISPREAKLMSPQLRVFMETSYH
                     ALEDANLSLDAVKDTNTGVFVGVGTNEYPRVLAYQGVTLEDLNIYFATGNVLNALAGR
                     VAYSFDFHGPIQAIDTACSSSMTAIHNACLSLQSGDCNMALAGGVNIILSPDSNITLS
                     KARMLSPDSRCKTFSEDADGYGRSEGCGVVVLKRLSDAVKDNDNILAVIKGTSINSDG
                     KSGGFTVPNGAAQEEVILSALAKANLSPGDIDFVEAHGTGTPLADPIEVNTLTKIFSE
                     HHNKENPLYISSVKTNIGHSESASGVASVIKTVLSLKTKTIFKHLNFKKLNPAIQLIN
                     TVIPLDKTDWTKKQGLRCAGVSSFGFSGANAHAILQEAPEDKKEARTLPEESLLVLSA
                     KSKTSLELLLASYQNYLSNTREEFADICYTAATCRSHFMYRVAIKAQNAAQAANIIKS
                     NGYTICHITKEKEWTQQPDTLAELQTAYLDGFPINWSEFYRSLGHHFAKVKLPLYEFE
                     RIEHWFGDKNKLKDAPLPKDWCFQIQWQNEPCDKSNRKLRGNRWLLIGPRHLADGFKA
                     QGLEIVYEDEEYSRDKLEGIIFAESLHLAPPDIEANIDFQKKTLKKLLNLIKELDNQS
                     IDLQLLILTSNGIAELANDKHPVNISNSPLIGFCKTLALELPQFKTILIDMDKIEEDK
                     YRTQVIEEINYNHGSRYEHIVAYRGGERLASRLKKTPLEDRRRLLHGVKGRYLIAGGC
                     GGLGLVTAQSLLSSGARELILTSRNIDKPRIKEAIYKIKSHYPGANIRVVSLDITDRE
                     SLKNLLSELNADGQLKGIIHAAGAAIKAPLLEHQDEDVDYLFSAKVKGGWYLHELSLD
                     CNLDFFVVYSSVSSVFGSNKESVYSGTNSFLDALIAERQRMGLPGTAVQWGPWGEVGM
                     AQKRSRDEGLKQALISNAQGHVIIKCLINDEFKHATIISPEYLKFMLDFVPKPLPGFY
                     GQLDEELEKIPQQHHQSPAKNLSPWLNQYLEISEEERFKACKAMVSDICTGILELTEN
                     EDLNEDEGFFELGFDSLMITELASELKKKLEPFLKVTVTIGFNYPSISKLAKYIESEL
                     DKNLVKIQSPKSTPKPIDDGIAIIGMSCLLPNAPDIAAFEKLLEEGLSGIKDIPNDRW
                     DNNQYYDPDMEAPGKSYVTKLGLIENIKYFDAAFFGISPREAKLMEPQQRVFLECCYK
                     ALENANYPSESLRGSLTGVFAGVGPNEYYAQLEKSGFSNEELSAYSITGNVLNLIPGR
                     VAYTFDFKGPSISVDTACSSSLVAIHYACQSLKNKEIDYALAGGVNILLMPESNVTLC
                     KAKALSPDGQCKTFDERADGYVRGEGCGVVLLKRLSDALRDNDHILAVIKGSAVNNDG
                     KTAGLTVPNGKSQEEVMKKALGQTELSRTDISYIEAHGTGTPLGDPIEVDAINKVYGH
                     QRNKENPLYLGTVKTNIGHLESASGVAGVIKTVISLQRKTIYKNLNFNKLNPNIKLDG
                     TQLALEKTNWKTNTKLNYAAVNAFGFSGTNAHVILAEFPKEEKPKTSKPSQKHLLVIS
                     AHSKTALDNLTQRYQQYLETTEHHFGDICFTAATCRDHYHYRLALTAENAIEASRMLG
                     AGQFALSYHENITLDLQNDRALNSLLMDYLQGKPVDWKSYYQSLKGEFTKVLLPNYTF
                     DRSEYWLDKKNNDSMATHKGEQHPLLGQMLAMPGNEYLFHQKLDLENLAYIKQHSVFE
                     KVIFPATAYIESGLAAAKSIFQSSAFQIEKFNIERPLHPKQGQEFQLQVKPKMDGQYK
                     INLFAKQENDWQTFCEMEIHAKPTAARESIHIDVLKSSFGDKVELSDIYEQFQKSSLF
                     YGDEFRVLQEGYVRTNSVLAKVTLTKASQGQDYYYHPVLLDGAMQSILLLSVKNDENK
                     NFNAENVTYIPYAFIRMTVFQEAPRSLWVHLTKQNTEDASDLCVNMNLYEQSGLLIAQ
                     IAGLKLRRVTRSHFVSYDAALNHLYYTEWSPVPLKTLPQQKIPDFLAITKNPGKAKEI
                     LDGLNYHLVERIDDCTNIENSNIVFLYEQGQFHDLFHCCQILFRLRPKRFILVTEHAY
                     AIQDHDQVNPYHTMACSFWKSFRNEYEPNKNYTIDLDSNSRLATALMYLFNTDTHDTQ
                     IAVRESLYLPRLKKKQLVSNSASERLIDGNATYLITGGTGGLAKLLMEYLMRRGARHI
                     AITSRAHYPDDIKALIDKAKQNQIDIKHYMVDAGNYQKMEQVIGEIQQSPNPLKGVFH
                     LAGLIQDGLIVNLNDEAMQKVISAKMDGALILHQLTQNIPLEWFVMFSSSASLLGARG
                     QANYAAANGFLDGLAHLRRQQGLPAISINWGPFHTTGMAANLTHTLQHYGFLPLDKDN
                     IDILDVLLPSQLPQISPCPMNWDVYCKHTPKQTELSALVKAKPLPDQSFLNALRQHSK
                     EESISILSQALREIAADVLALDDSEHISNHQDLFSTGLDSLMSMDIRNRIYDKLQCQT
                     LSLPIEYFINTPTINKIARHISDELDHVFDSHSDYHPTENPSEREIALCDFQYVFWVL
                     NKLDYHFNIGTQIQLHGRINKDYVQRAFEFVVNQNSVFWIHFNKDKPTQKLHKVGQFE
                     LIYQDISLNHETKALNHEFQNNILRAIPLTKQPLIRVYLYKINNELHELHIVIPHIIV
                     DDASCEMVFCQFKNNYEKLTLGKELVSNPEKGSYFN"
BASE COUNT         5230 a         3228 c         3088 g         4586 t
ORIGIN      
        1 aaattttaga taaaaactca aaaaatgagt ttttgtataa ctcacctaat attctcatcc
       61 tggaagataa tctggtagcc agacgtacaa tagaaagctt ggcgactcaa gaaaaatgtc
      121 gttttgtttc tgtagcaaaa ggtaaagaag ccatacggct tgctaaaacc aatgaatttg
      181 atctgataat cacagatatt gggttaccag atattgaagg acatgtggta gcaaaattaa
      241 ttagagaatg ggagttatct caatcaaagc caccgatacc aataatagga ttaactgcac
      301 atgtcaaaga aaaatccaaa gaaatatgct tgaaatcagg tatggatgat gtattcaaca
      361 aaccaatcag tcggcagctt ttacagtata tactgagtcg attcattcca tcaaaaaata
      421 aaaactcaac ttcatgctct tctcaaaaga caacatcatc agagcaaata atagaagcag
      481 atttgccaga aagtgaaagt aattttttta acttggactc ttatccttta ctcgatattc
      541 acaatgctgt ttccatcatg ggtagtctca aattggttcg ggagatatta ccacttatga
      601 taggtgaaga aacccaaaaa gatgttgaat ccattgaaaa agcttttcat ataaaagatt
      661 gggaaacggt agagagaatc gctcataaaa tgaagggtgg tgctgcgaat tgcggtgctg
      721 tacgtatgaa atatgcttgc caatatttag agcgctatca aaagatggga tataccaagc
      781 ttcttgagcc tctttaccaa caacttataa aagtcgtgga agatacccaa aagaatattc
      841 atgaatggct aaaacattga ccctcactag aaacatcaat ggtattcact aattaagccc
      901 ccagaaaaaa cttcaaatat aatatttatc aatcaacttg aatattataa atacacatta
      961 attaactttg ctataattaa tttaaataac gccaaattgg attcggtgta acctttggga
     1021 ggaagcagta aatgtctgat gaaataagta aagaatattt tgatgagact ctcggcatcc
     1081 atcaagaata cctgggtatc cttaattgcc taccagatat cgtttactgg gtggacaaag
     1141 attgtttatt aaaaggttgt aatcaaaact tcataaaatt acttggttta aaaaaaataa
     1201 aagatttaaa aggaactcct tatgaacaaa tggcaaaata cactgggtgg ccagaaaaaa
     1261 atattgaagc atttaaactg gatgacatga aagtgctctt ttcaggagaa ccccaatggg
     1321 atgtagaaga ggggccttta tttaacaagg ataaggaagt gagttattac cgaactcgtc
     1381 gcgtaccatt atttgataaa gacaataaag tatatggatt ggtagttgtt ctaactgaca
     1441 tcaccaaatt taaaaaaatg gaagagcaat tacagaaagt agctacaaaa gaaaagataa
     1501 aacctagtcc agccaaacga atagaagaac caaaaatatt aatggtcgaa gacaattttg
     1561 ttgcacaaaa agttgaagag gcattgctta aggaactgca atgccaagtt gatatcgcgg
     1621 acacgggaga taaagcatta aatcttttcg acccggggaa atatgatatg gtctttatgg
     1681 atattggtct cgaagatact tctggctatt tggtagcaaa aaaaattcgc caaaaggaac
     1741 aaaacaccaa ttatcatgta ccaattattg ccttaacatc ttaccaggct gatgtggtga
     1801 aatacgatgt tgaggattat tttatggatg gagtgctcac taaaccctta acaagcgaac
     1861 aagcagacca gttaatcaaa cactttgttc ataaagaaga cattatggtt tcaggcttaa
     1921 aatcagcaag agaaaattaa gatcaacttg cttagctgac aatatctgat ttttagcttg
     1981 ttcgcatgaa acaaaatgaa acattgccaa cacctggtaa atagagaaag tgttaaattg
     2041 gcacatccgt gcactacagc attaaagtac aacctcgtcg gcgaggactg tatcctcata
     2101 aaaacaagac acgtcccgca taatgtgtga gaatagattt cagccatgcc aaagatattt
     2161 gtaatcgctg gtttcttggg tatatcttcc cttacaatga ttattgatac tggagaatga
     2221 agtgatatgg gatcctgaac gttatgtgct tggaaactat attcaaaata aaatcaacga
     2281 tgtatttcta aaaacaattc acagcaagct gtctggaaat attttagata ttggttgcgg
     2341 agatgggcac tataccagct tgttggcggg caaggtaaaa catggccaaa ttctgggaat
     2401 tgatagctct gaacaaatga taatgcacgc caatcaacaa tgggcacgta cggggctatc
     2461 ttttgaagtt cataacattg aggaatttca ccaaccgcaa tcttttgatt tggtgctctc
     2521 attttggtgt ctgcattgga cgaatatcca tatttctttt ccaaatattt ttcatcttct
     2581 aaaaagggaa ggcaaattgt atgctgtcat gtcttccttt tccgatcaca gcattttgca
     2641 aacctggaaa gaattggcca aacaaaacct gtatagggat ttaacaaaac aatacatctc
     2701 tccaatcaat gaacagtatt tttatggtgt gattaatctt ctcaacagat tgccttttaa
     2761 acgaattaaa cttgatttaa aaacttgccg tgttcatttg ccgcatattg attattataa
     2821 gaatttactt ctaaccatgc ctttcataaa aagagttcct tctgaaataa cagatacact
     2881 ggttgaggac atgttaaaag catttcaaac tatctgtgac aggaaatacg gtggtgaatt
     2941 atattatgaa actcgcccca tatttttaga ggctatcaaa taactcaagg tgttaggagg
     3001 caatactgtg catttaaatt ttaatacaac tcctggcatg aacataccta tggtcattgc
     3061 aagccaggat aatttgaaag caagccctac ccctttatta cattttattt ctgagtatca
     3121 tgatgagata atccaaaagc tcaatcagta tggagcaata gtattaagag gattttcctg
     3181 tcaagaagag aactgctttt cgaaagcaat cgaattatgt gccttaggca cgcgatgttc
     3241 gacaagcgat tatgacctgc caagaactgt actggcaaat gaaatttaca catcaagtga
     3301 cctgccggct gatattccct taccgctgca tcacgaaaaa ccccgatcac caaaaccacc
     3361 taatcacatc tatttttgct gcatcattcc gcctcaggaa ggtggtggaa caatctttgc
     3421 caacgctgaa gaaatatgga tagatatgcc ccaaggcatt cagaacaaga ttcttgaata
     3481 cggtgtccaa tacaagcaat tttttcatgg gcaatctgta aaatatcgtg tattaagaaa
     3541 aattctggga aaccattgtg ctcgaagttg gattgattat tttggcacag aagacaaaac
     3601 tcaaatagaa caaaatttaa ctcaaaagca ggtagtatgg gattggataa atcatgggat
     3661 tgatttgata ataataaatt atttgcccgg agcattaaag catcctctaa ctgataaaat
     3721 ggcctggttt aattcatcag cttatttgaa ttattattcc aatttgaatt atggtgaatt
     3781 aaaaaacctg cgttcattca aatattgggc aagccggtat cttatcctga aagatatgct
     3841 tcccatgatc tgtcattatg gtaatggcca ggcgttttct gcaaaagaaa tatctgaaat
     3901 taaccaggtt attcagcgtc atactcgtgt ttttcattgg caaaaaggag atttcatgat
     3961 tgtggataat tttactttca tgcatggcaa acaagctcat gttggagaaa gattattgta
     4021 ttcatgcatg acggcttatt aatgctggat tatttttatc tgctccctga cagtcgcggt
     4081 tcagtgtttg aaccataatc cgagccgcaa ctatcagggc atactcttat acataagtta
     4141 ttctaactca atgtatgaaa ggtttcccaa gccaaagtaa aatctttcat gcgttgtaga
     4201 ccaatccaca tgacttttgt tccagggaag ccatcagagc ctcttcctaa atgtcctcca
     4261 aattttgcga tcattaaaat aatttcataa agtttaggtg gtttttttgg tggttttttc
     4321 tttgttgcca tggcataagt ggcttgccat tcgttatctt caaagactgt tgtacagtct
     4381 atatcagggc aagttcgtcc caacattgtt aaataaaata cccgccatgc cactatcata
     4441 taaaaagcga tgcaattaag agtagcctcg taagtttcaa atcgtaattc ctctatcttg
     4501 catccactct ttaaaatttt tatgtacatt tctattaacc acctacataa ataccaatta
     4561 acaatttcaa ctgcccgatc cagtgttttt atagggacac ttgtgattag aaaccattca
     4621 acgggttgct ccccttctgg tgtatttatt tctttgcagt gtacaacctg aatttcaatg
     4681 acgttcaatt ttttgctttt tcgacgagga ggccttaaag aaacactaca tatacgaatc
     4741 tcctgtctaa cgctacgggc ttttcgagta tgtctttttt tgcaatttct ataggaagtg
     4801 cctgcgggaa tttcaaactc tatggtgcca agaacacaag ctttgctaac ttctttttta
     4861 agaagtaact cgaattgatt tgtttcttca ttcaaaacag ctctatcatg ctgacaacgt
     4921 ataagccaat aggctttatt ttcttcggag ggaagttttt caagaacctc ataaatatct
     4981 ccctctctat cggaaatact gacaaccatt gtatcgggta ctgccagtgc aattttattc
     5041 gctgcattat agcccttaag ccaacaatag gtttcctttt cctcaattga ctttcccttt
     5101 ctactattcc tcgtaccaat ctcttttctt atccaatgct gcatttctac tacgcccaaa
     5161 caaactcgtt ctggcgtaaa tgcaatgctt ggatgtaaat ataatccccg gcttctctcg
     5221 ttggagagat aacccatgcc tgacaatgat tttctacctg taaaatctac ctctgttgtg
     5281 tcttggggaa ttagaactat cttttctgct tttatacgtt ctagtgtcgc ttcagaatgg
     5341 ggtaaaagaa ttgattccgg atttacattc acatggttaa aaaaccggta ggctgccagt
     5401 gtttcattcc aactttgaaa tgtagttgga atgcttgcat ttggtgagct aagtaacccg
     5461 cttaagatat ctccataacg cttatctaac cgcttatcac cgaagttcgc ttccttggat
     5521 tcattaataa tccattcaca actagccatc taagttccat ataaaaaata tgaattttac
     5581 atggattaat acttatgtat aagagtatga ctatcaggga gcggatatgg tattcccata
     5641 caaaatcttg ctgaattctg gctatactta aggtaaatag accttccagg ttaatttgtt
     5701 tatactcaaa ttctctctct gttatggttg tttttattat aactctttgc cagacaaata
     5761 atttttgtgc gtagccaggc actttcagga gcattgtaag tggtaaacgt aactatgaaa
     5821 aacaaaacca aaaacctttt gaatgaaccc attgccatca ttgggatgaa ttgtcaattt
     5881 cctgggattg attctgatat agaagatatt agtgcctttt atgacatgct gatgaaaggg
     5941 caaacaccaa tcaaagatgt gcctgaaaat cgctggaata ttgaagaata ctatagtgct
     6001 gacagaaaaa aagcagataa aattattagc aaaaaaggcg gttttttaga taacacccat
     6061 ttattcgatg ctgcttattt taaaatatct tctgccgaag cgaagcaaat agatccccaa
     6121 caacgccttt ttctcgaagt ggctattcga gctttaaatg atgccaatat cccactagac
     6181 tctttaaaag actctaacag cggagtttat tgcggcattt ccacacacga atacagccaa
     6241 ctgaactata aagaccatat caaatttaat gcctacacac ccattggaat agcgaacagt
     6301 gctgccgctg gcaggctctg ccattttttg aatttaaaag gacccagcat ggctgttgat
     6361 acagcatgct cttcttcgtt cactgcactc tatctagcgg ccaccgcatt gagaaaccag
     6421 caatgtgata tggcaattgt cggaggcgtc catttgagtc tctgtcctga aagttttatc
     6481 ggattaacca aagccaatat gctgtcagcg acaggtcaat gcagcagctt tgacagtaaa
     6541 gcagacggct ttgttcgtag cgaaggttgc ggagtagtta ttgttaaacg cttaactgac
     6601 gccatacgag acaataacaa aatctatgca ctcatcaaaa gcatggttat taatcaaaat
     6661 ggcgatggaa caggccttgc agcccccagt actaatgccc aaattgccat gcaccaagcc
     6721 gcattggaac atgcccattt aactgcaggt gaaattgatt acattgaaac ccacggaaca
     6781 ggcacaacag taggtgatcc cgtcgaattt aatgcgatcc aaagcattca ccaggggcat
     6841 cactctcctc aaaaaccctt gatagtaggg gcactgaaaa gtaatatagg ccatactatt
     6901 tcatcatcag gcattgcttc tttaattaaa gtactttgct ctttgcaaaa tgaagcgatt
     6961 ccccccaatt tacattattc aaacccgaac agcttgattg atcctgaaag tatccctgcg
     7021 cttctacccg ttgaagcaat tccttttctc aaactcaaaa ataaaaaaag atatgtccag
     7081 gtatctaatt tcagctttac aggcacgaat gtaagtgtca ttttggaaga agcgcctgag
     7141 ttggaatcac acgagtcaaa gcaagacgac aatgaaccaa aatgttttgt tgcctcagcc
     7201 aatagtgaac tctcattgaa acaattgatg tcacgctacg aacactattt gaaaaattct
     7261 tcctcaacct tgggcgatat atgccatacc ttgatcaatt gtagagacca ttacaaattt
     7321 cgctgcgcca tcattgtaaa cgataaaaaa gaactcatta aaaaaattga atcgaaagac
     7381 tatgaaataa aaaaggtagt tctgcaaaac aatcccagaa cggtattgaa tgatgccaaa
     7441 gccatttacg aagcttactt atccggcatt aatatcagta ctgatgataa aaatactgcg
     7501 tacaacaaag tggatttacc gctctactgt tttgacagaa aaccctattg gcatgaagtc
     7561 agaaaacaag tcaagaatga tcattggctg gattctttat atcaacaacc aatagaacaa
     7621 caagtcgcaa tcattaaaac agagctcgca tcccaaatca aagatctttt aaagaaagac
     7681 aatatagatc cgcatcagga tttggaaact ttaggtttaa ctacctcctt attggaatcc
     7741 ctggatcaaa tcttccagga tatgttttcc ccccgatata aggtgccttc tctccaatcc
     7801 ttacgctact taaccctgga taaactggca agacatttac aaaaaatgat catgccgcct
     7861 gtcgtttacc gacaaccgtc aattaatgta ctcaatgttg aacctattgc aattataggt
     7921 atgagttgtc gtttccccaa agcagccaat gtggatgaat tcctgtcttt gctggaaaaa
     7981 ggagaaagcg gcatgatcga tatcccctta gagcgctggg ataacgaaaa attctatgac
     8041 tcggacgttg atgccttagg aaaactgtac atcaagcaac tgggcttcat tgatcatgtc
     8101 aaccattttg atgcggagtt tttcaatatc agcccgcgtg aggctaagct catgtcacct
     8161 caattgcgtg tttttatgga aaccagttat cacgcacttg aagatgccaa tctttctctt
     8221 gatgcggtca aagacactaa tacaggagtt tttgtcggag tggggactaa tgaatatccc
     8281 cgagttttag cttatcaagg cgttacctta gaagatttga atatttactt tgcgacgggg
     8341 aatgttttaa atgcgctggc cggccgtgta gcctattcct ttgactttca tggcccaata
     8401 caagcaatag ataccgcatg ctcatcctcc atgacagcca tacacaatgc ctgcctgagt
     8461 ctgcaatccg gtgactgtaa tatggctctt gctggcggtg tgaacatcat ccttagccct
     8521 gattctaaca ttactctttc aaaagccaga atgctctcac ctgacagccg ttgcaaaacc
     8581 ttcagtgaag acgctgatgg ctatggccgc agcgaagggt gtggtgtggt ggttttaaaa
     8641 cgtttaagtg acgccgttaa agacaacgat aatattctgg cagtaatcaa aggcacctcc
     8701 atcaacagcg acggtaaaag tggtggtttc actgtaccta atggtgctgc gcaagaagaa
     8761 gtcatcctaa gcgcattggc aaaagcgaac ctgtcacctg gtgatattga ttttgtcgaa
     8821 gcccatggga ctggcacgcc attagctgat cctatcgaag tgaatacgct gaccaagatt
     8881 tttagtgagc atcacaacaa agaaaacccg ctttatatca gctcagtaaa aaccaatatt
     8941 gggcactcgg aaagcgcatc cggtgtagcc agtgttatca aaaccgtttt aagcctgaaa
     9001 accaaaacaa tatttaagca tctgaacttc aaaaagctta atcctgccat tcaattaatt
     9061 aatacagtaa tccctcttga taaaaccgat tggaccaaga aacaaggctt aaggtgtgcc
     9121 ggggttagtt cttttggttt tagtggggct aatgcccatg ccatcctaca ggaagctcct
     9181 gaagacaaaa aagaagcacg cacccttccc gaagaatctc tgctcgtttt atcagcaaaa
     9241 agcaaaacct ctctggagtt attactggcc agttaccaaa actatttatc caatacccgg
     9301 gaagaatttg ccgatatctg ctacacagca gcaacttgtc gcagtcattt tatgtatcgt
     9361 gtagcaatta aagcgcaaaa tgcagcccag gcggccaata tcataaaaag caatggatac
     9421 actatttgcc atatcaccaa agaaaaagaa tggactcaac aaccggacac acttgcagaa
     9481 ttgcaaacag cctacctgga tggattcccc atcaactggt ctgaatttta tcgctccctt
     9541 ggccatcatt ttgcaaaagt aaaattaccc ttatacgaat ttgaacgtat agaacattgg
     9601 tttggtgaca aaaacaagtt gaaagatgca cctctaccaa aggactggtg ttttcaaatc
     9661 cagtggcaaa atgaaccatg tgataaaagc aatcgaaagc tgagaggaaa tagatggctt
     9721 ttaattggtc ccagacatct ggctgatggt ttcaaagctc aaggcctgga aattgtctac
     9781 gaagatgaag agtattctcg agacaaactg gaaggcatca tttttgctga aagtttgcat
     9841 ctggcaccac ctgacataga agctaatatt gattttcaaa agaaaacctt aaaaaagctg
     9901 ctgaacttaa ttaaagaact tgataaccag tcaattgatt tgcaattgct cattcttacc
     9961 agcaatggaa ttgctgaact ggcgaatgac aaacaccctg tcaatataag caatagccct
    10021 cttattggtt tctgcaagac tctcgcttta gagctgccac aattcaaaac cattctcatc
    10081 gatatggata aaatcgaaga ggacaaatac cggacacaag tgatagaaga aatcaattat
    10141 aaccatggaa gccgctatga acacatagta gcttaccgtg gtggggaaag gctggcttcc
    10201 cgtttaaaaa agactccgct ggaagatagg cgacgactat tgcatggagt gaaaggacgc
    10261 tatcttattg ctggcggctg cggtggtttg ggattggtaa ctgcccaatc cttgctttcc
    10321 tctggagcaa gagaattaat tctcacctca agaaatatcg ataaaccaag gatcaaggaa
    10381 gccatttata aaattaagtc ccattaccct ggcgccaaca tccgggttgt cagtttagat
    10441 attactgata gggaaagttt aaaaaattta ttatcagagc ttaatgccga tggtcagtta
    10501 aaaggcatca tccatgccgc tggtgctgcg attaaagcgc ctttgcttga acatcaggat
    10561 gaagacgttg attatttatt ttcagctaaa gtaaaaggcg gatggtattt acatgaacta
    10621 agtctggatt gcaacctgga tttctttgtt gtctattctt cagtttcctc cgtatttgga
    10681 agcaacaaag aatccgttta tagtggaacg aacagtttcc tcgatgcctt gatcgcagag
    10741 cgtcagcgta tggggttacc tggcaccgct gttcagtggg gaccttgggg tgaagtagga
    10801 atggcccaaa aacgctcgcg tgatgaagga ctaaaacaag cgttaatcag taatgcacaa
    10861 ggccatgtaa tcattaaatg tctcatcaac gacgaattca aacacgccac tatcatatct
    10921 ccagaatacc tcaaatttat gctggatttt gtacccaagc ccctacctgg gttttatgga
    10981 caacttgatg aggagcttga aaaaatacca caacaacatc atcaaagccc ggcaaaaaat
    11041 ctgtctccat ggcttaatca atatctggaa attagtgaag aggagcgatt taaagcctgt
    11101 aaagcaatgg tatctgatat ttgcacagga atccttgaac taacagaaaa tgaagactta
    11161 aacgaagacg aaggtttttt tgagttgggt tttgactcgc tcatgattac tgaattggcc
    11221 agtgaactaa agaaaaagct ggaaccattc cttaaagtta ccgtgaccat tggttttaat
    11281 tatccatcca tcagtaagct tgccaaatac attgaatcag agcttgataa gaacttggtc
    11341 aagatacaaa gtccaaaatc aactcccaag ccgattgatg atggtatagc aattataggc
    11401 atgagttgtt tattgcctaa tgcgccagac atcgctgcct ttgaaaaact gttggaagag
    11461 ggattaagcg gtatcaaaga cattccaaat gaccgctggg ataataacca atattacgat
    11521 cccgatatgg aagcgcctgg taagtcctac gttactaaac tgggattaat cgaaaatatt
    11581 aaatattttg acgctgcatt ttttggtatt agtccccgag aagcaaaatt gatggaacct
    11641 cagcaaagag tatttcttga gtgttgctac aaagcattgg aaaatgccaa ctacccttcg
    11701 gaatctttgc gtggcagctt aacaggcgta tttgcaggcg taggtcccaa tgaatattat
    11761 gcgcaactgg aaaaatcagg gttttcaaac gaagaactca gcgcttactc catcactggt
    11821 aatgtactca atctgattcc aggccgagta gcctacactt ttgattttaa aggcccgtca
    11881 atcagtgttg acacggcatg ctcttcgtcg ctggtcgcaa tccattacgc ctgccaaagt
    11941 ttaaaaaaca aggaaattga ttatgctctt gcgggtgggg tgaatatact gcttatgccg
    12001 gaatctaatg taactttgtg caaggcaaag gcattatcac ctgatggcca atgcaaaacc
    12061 tttgatgaaa gggctgatgg atacgtcaga ggcgagggtt gcggcgtagt attgcttaaa
    12121 agactctccg atgccttgcg ggataacgat cacatcctcg ccgttattaa aggctcagcc
    12181 gtaaataacg atggtaaaac agctggatta accgtaccta atggtaaaag ccaggaagaa
    12241 gtcatgaaaa aagcgcttgg ccagactgaa ttgtcgagaa ccgacatcag ttatattgag
    12301 gctcatggca caggaacccc gttaggggat cccattgaag tggatgcaat caacaaagtc
    12361 tacggtcatc aacgcaacaa agagaacccc ttatacctgg gtactgttaa aaccaatatt
    12421 gggcatcttg aaagtgcatc aggcgtagct ggcgttataa aaaccgttat cagcctgcaa
    12481 aggaaaacca tttataagaa tttgaatttt aataaattaa atcccaacat caaactggat
    12541 ggtactcaac ttgctttaga aaaaacaaat tggaagacga atacaaaact caattacgca
    12601 gcggtcaatg catttggttt tagcggcacg aatgcgcatg ttatccttgc ggagtttcct
    12661 aaagaagaaa aacccaaaac ctcaaaaccc tctcaaaaac atttactggt tatttcagcc
    12721 cactccaaaa cggctttaga taatttaact cagcgatacc aacagtattt agagacgact
    12781 gaacatcatt ttggtgacat atgctttacc gcagcgactt gtcgagatca ttatcattac
    12841 cgtttggctt taaccgctga gaatgcgatt gaagcgagtc gtatgctggg tgcagggcaa
    12901 tttgccttgt cttatcatga aaatattaca ctggacttac aaaacgacag agcgcttaat
    12961 tccctgttaa tggattatct gcaaggaaaa ccagttgatt ggaaatccta ctatcaatcc
    13021 cttaaaggag agtttacaaa agttctgctg cctaattata cctttgaccg cagcgagtat
    13081 tggctggata aaaaaaacaa cgatagcatg gccactcata aaggtgagca acaccctctt
    13141 ttagggcaaa tgcttgccat gccaggaaat gaatatctgt ttcatcagaa actggatttg
    13201 gagaatttgg cttatatcaa acaacacagt gtttttgaaa aagtgatttt tccagcaaca
    13261 gcctatattg aatcgggttt ggcagcagca aaatccatat ttcaatccag cgcttttcaa
    13321 attgaaaaat tcaatatcga acgtcctcta catcctaaac aaggtcagga gtttcaatta
    13381 caagtcaaac ctaaaatgga tggacaatac aaaatcaatc ttttcgcaaa acaagagaac
    13441 gactggcaaa ctttctgtga aatggaaatt catgccaagc cgacagcagc ccgggaatct
    13501 atccatattg acgtgcttaa atcatccttt ggcgataaag tagagctgtc ggacatatat
    13561 gagcaatttc agaaaagctc attattttac ggtgatgaat ttcgtgtcct gcaagagggc
    13621 tatgttcgga cgaacagtgt tttggctaaa gtcacattga caaaggcaag ccagggccag
    13681 gactattatt atcatcctgt tctgcttgat ggtgccatgc aaagtatctt gttattaagt
    13741 gttaaaaatg acgagaataa aaattttaac gccgagaatg ttacctacat accctatgcc
    13801 ttcatccgca tgactgtatt tcaggaagcg ccacgaagcc tatgggtgca tttaactaaa
    13861 caaaatactg aagatgcgag cgatctttgc gttaacatga atttatatga gcaatctggt
    13921 ttattaattg ctcaaattgc aggccttaag ttgcgaagag taacacgaag tcattttgtt
    13981 tcttatgacg ctgctttaaa ccacctttat tacacagaat ggagccccgt cccattaaaa
    14041 accttacccc aacaaaaaat ccctgacttc ttggccatta caaaaaatcc tggcaaagct
    14101 aaagaaatat tggatggcct taattatcac ctggttgaaa ggatcgatga ctgcacaaat
    14161 atcgagaaca gcaacatagt attcctttat gaacaaggac agtttcatga tctttttcat
    14221 tgctgccaga tcttatttcg attgcgtccc aagcgcttta tactggttac ggaacatgct
    14281 tatgccattc aagaccatga tcaggtcaat ccttatcaca caatggcctg ttctttttgg
    14341 aaaagcttta gaaatgaata tgagcccaat aaaaattata ccattgattt agactccaat
    14401 agtcgcttgg ctacggcgtt aatgtattta tttaatacag acacccatga cactcaaata
    14461 gcagtcagag aatctcttta cttacccagg ctaaagaaaa agcaattggt cagtaactct
    14521 gcctcggaga gattaattga cggcaatgcc acttatctta ttacaggcgg tactggagga
    14581 ttagccaaac tcttgatgga atacctcatg aggcgcggtg ccaggcacat tgccattacc
    14641 agccgcgccc actatccgga tgacattaag gcattaatag ataaggccaa acaaaatcag
    14701 attgatatca aacattacat ggttgatgcc ggaaattatc agaaaatgga gcaagtgatt
    14761 ggagaaatac aacagagccc caacccattg aaaggcgtat ttcatttggc aggtttgata
    14821 caagatgggc tcatcgtcaa tttgaatgat gaagcgatgc aaaaagtaat cagtgcaaag
    14881 atggatggcg ctttaatttt acatcaatta acccaaaata tcccattaga atggttcgtc
    14941 atgttttctt catccgcttc cttgttaggt gccaggggtc aggcaaacta tgccgcagct
    15001 aatgggtttt tagatggttt agcccattta aggcgccaac agggcttacc agcaatttct
    15061 atcaactggg gacctttcca taccacagga atggcagcca atttgactca tactctacag
    15121 cattatggtt ttttaccatt ggataaggac aacattgata ttcttgatgt gctcttgcct
    15181 agtcaattgc ctcaaatttc accttgccct atgaattggg atgtttactg caaacataca
    15241 ccgaaacaaa cggaattatc cgcgctggtt aaggcgaaac cactacctga tcagtctttt
    15301 ttgaatgcac ttcgacaaca ttccaaagaa gaaagcatct caatattgtc acaagcatta
    15361 cgagaaattg cagcggatgt cctggctttg gatgacagcg aacacatttc taaccaccaa
    15421 gatttgtttt caacgggtct ggattcactg atgtcaatgg atatcagaaa tcgcatttat
    15481 gacaaattac aatgccaaac actaagctta ccgattgaat attttattaa tactcctacc
    15541 attaataaaa tcgccagaca tatttctgat gaattagacc atgtttttga tagtcactct
    15601 gactaccacc ctactgaaaa tccgtcagaa agggaaattg cattatgtga ttttcaatat
    15661 gtattctggg tgcttaacaa actggattac cattttaata tcggtacaca aatacaatta
    15721 cacggccgaa tcaataaaga ttatgtccaa cgggcttttg aatttgttgt gaatcaaaac
    15781 agtgtcttct ggatccattt taataaggat aaaccaaccc aaaaattgca taaagttgga
    15841 caatttgaat taatttacca ggatatttct ctgaatcatg aaactaaggc gctgaatcac
    15901 gaattccaaa acaatatatt gcgcgctatt ccactcacca aacaaccatt gattagagtg
    15961 tatttgtata agattaataa tgaattgcat gaattacaca tcgtaatacc ccatattatt
    16021 gttgatgacg catcatgcga aatggttttt tgtcaattta aaaacaatta tgaaaaacta
    16081 actcttggga aagaattagt atccaaccca gaaaaaggct cttattttaa tt
//
LOCUS       DACVWI010000061        16058 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.061, whole genome shotgun sequence.
ACCESSION   DACVWI010000061 DACVWI010000000
VERSION     DACVWI010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 16058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16058
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.061"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..179
                     /locus_tag="JBH85_07105"
     CDS             <1..179
                     /locus_tag="JBH85_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DotU family type IV/VI secretion system protein"
                     /protein_id="HAU0945965.1"
                     /translation="FNENPLPKTIKKNYKATWITTIAAVGIVILAFVTSHVLLENKAK
                     TVLFGHTQLAMLEN"
     gene            179..3100
                     /locus_tag="JBH85_07110"
     CDS             179..3100
                     /locus_tag="JBH85_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion protein IcmF"
                     /protein_id="HAU0945966.1"
                     /translation="MDNSLRALCDAIKKILSQLKPQTNQLSFVVITGKNAQGKSALLK
                     QSNMEEMPVFSEEHAKLYFNQKGIIVELGENWLTNSKTLLLTTLKQLNKCNRHLKITG
                     LILCVDVNDLLIAEPAQFTEQKKSHLQLIQRLGVNLGYQAELALIFTKMDTLAGFSEF
                     YQMDHVNDLSKPLGFSLDCVNQLSKKIETFSLQFNQLIEALGQQVINKMHPARSTIKR
                     SLIREFPLQLASLRAPIQSLIQGISPKLFHVHSIFFTSAEQGGVSVDRLNKKIQHEYA
                     LVVQDTFPQATNFRSYFVEGALQTIQEQCIQVPQTTKFSQKPFIAVAVSLAGLSLLTL
                     VYNHYKTSHILDEASKELLAYEALNNQGTSGAQALYHLSQAANKMNHITSNSISLPTV
                     HQLKLNLHNNAQNRLQGEFLPSLANELEQVITSPGNTPITRYKALKIYLMLGNSKYFS
                     SQPILDWFQQQWQGRAPGTTQKQLALLKQTLSNPPQNIPIKSQIISDARNYLNALPTS
                     YLYYSIAKEYFPQEKQKIVIEGFSIPTDEVPTYFTKTGFTKIINELPKITSTLQSENW
                     VLARQDLSQLHNMLIQAYCFDYVTWWQTFMKKSQPLRYQDYQQGRQLTKLIQQSNSFY
                     KFANLIQQETKPDLTEGISTFNQFIANQFTDLNLTTLSSIKELDFRISELERFIATLS
                     VVNDGGKTAFTITRSRFLNENSSDPVSLLYSQARQLPEPLSSWTKQIAGDIWVILIRD
                     SRQYINNQWQKTVYREFQNSIAQRYPFDSSQTAEIDIADFNRFFSTHGLLNTYSEQYI
                     KPFLDTSSPEWKPKAVNDFILPISNEVIDELIRANIITNMFFPDHSDESKIDFSLQKI
                     SLDPVVSNLVLEIGGTKLMDNQTSDSLIRFTWPQNNAKLALDSIEGNHYELAEYGTWA
                     IFKLLEKVNVLVDEQDSSSLQILFEVNSNSGRYLLKTNNQINPFTPGILNGFTLNDHI
                     A"
     gene            3103..4359
                     /locus_tag="JBH85_07115"
     CDS             3103..4359
                     /locus_tag="JBH85_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HAU0945967.1"
                     /translation="MKQNTKHSIIAGLYGNALEWYDFLLYASFAPVFAEIFFPSKIHF
                     VSLIATFSLFAIGFIMRPIGGLLLGHYADHVGRRKALILSMSVMTISTALIAVLPDFN
                     SWGIIAPLLFSVLRLIQGLAVGGELPGSTTYLIEHMFQQSRGLAGSLVLSSAFLGIFI
                     GALTASIFSTLFTGDALLNWGWRYAYLLGGILGILGIYLRIKSFESPTFLKDKHTAEL
                     PAKVVFTRFKQQLFLSVIITSILAMSNYVLIAYVTTFLVKSEYFLLKDALLINLIALA
                     LLTVLIPLMGFLSDVVGRKPIFLIGLFALCLLIFPFFWLLLSGSWWKALCSELLLAIA
                     LAPINATVPTIIAEMFPTSVRASGISISYNIGQALFGGTMPLVAFSLIELSSNKMAPA
                     WYLFLWTLIVIPITISIRESYQKELT"
     gene            complement(4505..7534)
                     /locus_tag="JBH85_07120"
     CDS             complement(4505..7534)
                     /locus_tag="JBH85_07120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmB"
                     /protein_id="HAU0945968.1"
                     /translation="MANWSESFFEGVDTFFAWLSTSLKQTTESYIDLETADSPTVLVN
                     HDGSLLSVLKIEGITGLAGPEEFERLVEGLANSFQAAMGRPGHALQVYFSHDKQNIVK
                     MIKDIYDPAEATASRLELNLRDLFEERVNYLSQYCAEERVYFVLYTRPFNLASDQLKA
                     ANKAKMKMIKDTKAPPFKNTQTIFAAVPEIRDTHDAYVRAILNDLDALNVIAKLLEVH
                     DAVHAIRMTGDPDYTADDWRATLPGDKIPVRELNNFEGDPSDLLWPPLSRQVLPRDAE
                     IIDLRTVRVGDKIYASTYIDLFPKDVRPFISLFSRILPSHVPWKISFLLESEGLSTIK
                     LKGLLAAILSFSSAQNRLISDSVNLLKYIQLNTDEAIVRLRVVATTWAPEGNIPLLRR
                     RSSELVKAIEGWGSTDVSEICGDPFAGFVSSMLATTLNSSAVASVAPLSDVISMLPIT
                     RPASPWKTGALLFRTPDGKPWPFQPGSTEQTTWIDLVYARPGSGKSVLSNALNLALCL
                     SGGLMRLPRIAIIDIGPSSSGLISLLKEALPASKRHLVAYHRLRMTPDYSINPFDTQL
                     GCRYPTALERSFLVNFMTLLTTPLGAAKPYDGMADLAGMVVDELYKSMADEFNPTPYA
                     PGIEEFIDGILEEIGFVRDAKSTWWEVTDALYSAGFVHEAMLAQRYAMPLLADAASIC
                     RTPSIEDLYEKITAPTGESLINAFSRMISSAVREYPILSRVTSFDIGDARVVSLDLDE
                     VAKSGGDAADRQTAVMYMLARYVLARHYYLTEESLNNVPEQYKEYHKQRVLEIREDHK
                     RIVYDEFHRTAKSSAVREQVIIDMREGRKWKVQISLLSQAVDDFDPVMIDFATAIYVM
                     DAGPSQAVEKTSQIFGLSETAKIALRTRVHGPRQGGATFLAQFATKTGINVQLLTLTL
                     GPVELWAFSTTAEDATVRNLLYRHLGPSEARRLLAALFPNGTVTKELEARLASMKQKV
                     GLIEDDEREGMINQLVNDILDAYSKDPNVKSLPAKVG"
     gene            complement(7570..8214)
                     /locus_tag="JBH85_07125"
     CDS             complement(7570..8214)
                     /locus_tag="JBH85_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HAU0945969.1"
                     /translation="MNVNQTMADNQQRCELKLIASPGSWRLYSARKIDERFKSYEQKI
                     FQRDRYTCQFCGFQARLYQDIVNLDGDYTNNRLSNLVTACCFCAQCFFVESVGVGGYG
                     GGTLIYLPELTQAELNSLCHVLFCAITNDTGYKSSAQNIYRSFKFRSQIVEEKFGEGT
                     SDPAIFGQLMIDSGVNSEEIREKLFKNIRLLPSRAKFRKQIEKWAASALEEIAD"
     gene            complement(8394..8792)
                     /locus_tag="JBH85_07130"
     CDS             complement(8394..8792)
                     /locus_tag="JBH85_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmD"
                     /protein_id="HAU0945970.1"
                     /translation="MNIKVIHKSGYKHWLVSAACLALLTLICQDAAAGVSLGKMASQI
                     TGSFTSLTKLITAGSYLAGLGFSIGAIMKFKQHKDNPTQIPIGTPIALIFIAAALLFL
                     PSILGVAGVTMFGGSGGKTAGPTGTIYKTN"
     gene            complement(8818..9402)
                     /locus_tag="JBH85_07135"
     CDS             complement(8818..9402)
                     /locus_tag="JBH85_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmC"
                     /protein_id="HAU0945971.1"
                     /translation="MADPTCTGGTVACWIVSQANILANIANQLEPVQRLITGGAYLIG
                     CAFIFKAIYSLKVYGEARTMMSSNTSIKEPVMYLMVGALLIYFPSLVSSVLQTTFGYS
                     NPLAYSGGVSSGSDTISALFGSGSLVGRPLVMIIRVIGLIAFVRGWVLIARSASQGQP
                     PGGTGKGLIHVFGGILAINIVGTVDMINNTLYGT"
     gene            complement(9410..10219)
                     /locus_tag="JBH85_07140"
     CDS             complement(9410..10219)
                     /locus_tag="JBH85_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmG"
                     /protein_id="HAU0945972.1"
                     /translation="MMAEHDQNNDEYKFAELDSYDMDQAGESDLDSEASYQSGKEGLT
                     KKKDIKRNALIAIGAVVFIMVMYKIIGWMFFSDKSSQVTSKPAIPPVTQVATPQPVQT
                     IPTTTPIQQVQPTTIIEDDPDLKKKVSAIEMTQQSLRSEVNALSEQINAVNNNIKNLN
                     AQIVNLNQIIGNMSNQIARQSEVINVLMARTTPKKVVKVSRPIVQARIIYYIQAVIPG
                     RAWLIGSNGSTLTVREGSKIPGYGMVKLIDSLQGRILTSSGQVIKFSQEDS"
     gene            complement(10234..13380)
                     /gene="dotG"
                     /locus_tag="JBH85_07145"
     CDS             complement(10234..13380)
                     /gene="dotG"
                     /locus_tag="JBH85_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein DotG/IcmE"
                     /protein_id="HAU0945973.1"
                     /translation="MASKKENLKSLFSNTRTRVIIIFTAALLIIAVVIGFFKIRGATT
                     GSIAAAEVSTVPGGIQSIPGVLDPTAQYAKLQEEQNITQAQVAEKTGGSAIPTIIRTQ
                     ALGEGVGVIGSQSGVGFAALAQEELGGPQRSLWIQELQDGSCSKSVITKVVNQGAQLT
                     DLKAACSCVQLKDSGYGLQELEQVCECKELKSAGYNARQLKEAGYSAGRLRNCGFDAC
                     ELRNAGFTAQEMKDGGFSDGELKGAGFSDAEIAKASGLPDGITADDVRKAGCGAAALA
                     KLRQAGVSASAIRKISGCTAEQLKAAGYTAKELKDAGFSAADLRRAGFSAAELKDAGF
                     TARDLLNAGFTPADLAKAGFSDAQIKAAQAELPPGITPQDVKNAGCDVEALKKEREAG
                     VSAALIRQYAGCSAQALKAAGFTDADLANAGFTPAQISAATPLSDAEIKAAGCDPDKL
                     KKLFSAGVSAKRIKELNGCSAEALKAAGYDAQSLLAAGFTPQELLAAGFTPKQLEDAG
                     LNPVSIIADGRVADCSVESLKKARAAGVSALTIKQTLGCSAAALKAAGYTAKELKDAG
                     FTAAELKAAGFSAKELKDAGFTAKELRDAGFSAQELKDVGFSAKDLKDAGFSAAELKA
                     AGFTAAQLKAAGFSAKDLKDAGFSAAELKAAGFSAKELKDAGFSASDLKNAGFSAKEL
                     KDAGFSASDLKSAGFSASELKNAGYSADELKKAGYTSAELRNAGFSPQESAVAGLQGP
                     DLQQLDSSITGIPSIPGATPRPTTSDAASSAEQLQAILQKQNEQLAEQKYQQEIQQRT
                     SDMLTAATQLVQDWKQVETQVYTEGTEETKTSGGESAVPGTGTGTGSNNQPVDQGAVS
                     AQNQAIIKTGDIMFAVLDTSVNSDEPGPILATIVTGKLKGSKLIGSFNLPSNADKMVI
                     TFNTMSIPGAEKTISISAYAIDPNTARTALASRTNHHYLMRYGSLFASSFLQGFGNAF
                     QSANTTITIGGTGGGNNITVANGVGRSTLENAVIGLATVGKAWSQQAQQLFNTPTTVE
                     VYSGTGLGILFTQDVTTI"
     gene            complement(13385..14470)
                     /locus_tag="JBH85_07150"
     CDS             complement(13385..14470)
                     /locus_tag="JBH85_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmK"
                     /protein_id="HAU0945974.1"
                     /translation="MMKKYDQLCKYCLVIGLTFSMSCSIYAADQSDDAQQALQQLRML
                     QQKLSQNPSPDAQSGAGDGGDNAASDSTQQPNQSGQANAPAANQTATAGGDGQIISQD
                     DAEVIDKKAFKDMTRNLYPLNPEQVVKLKQIYETSEYAKAATPGTPPKPTATSQFVNL
                     SPGSTPPVIRLSQGFVSSLVFLDSTGAPWPIAAYDLGDPSSFNIQWDKTSNTLMIQAT
                     KLYNYGNLAVRLRGLNTPVMLTLIPGQKAVDYRVDLRVQGYGPNAKSMPTEEGIPPSA
                     NDLLLHVLEGVPPPGSRRLVVSGGDARAWLSNEKMYVRTNLTILSPGWLASMTSADGT
                     HAYEMQKSPVLLVSWHGKVMQLKVEGL"
     gene            complement(14470..15108)
                     /locus_tag="JBH85_07155"
     CDS             complement(14470..15108)
                     /locus_tag="JBH85_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein DotI"
                     /protein_id="HAU0945975.1"
                     /translation="MAEDALTVVALRNKFYKDSQRKVILALLIAIVVNVVLASLVVYM
                     ITHPPAPKYFATSINGRITPLFPLDEPNQSDSAVLQWANQAAIAAFTYNFVNYRDELQ
                     ASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRV
                     QMPILVTYQSASEFTQQNNVVTMLITRVSTLNSPRGIGISQFVVGPASGGVS"
     gene            complement(15124..15408)
                     /locus_tag="JBH85_07160"
     CDS             complement(15124..15408)
                     /locus_tag="JBH85_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HAU0945976.1"
                     /translation="MSRETWALIKRNKNFNVHIYRRGLTLLILSLGLSCGLSGLIYYV
                     HMHEPERDFYATSGITPPIQLKPMSTPNMSSEALLPPDPPDEDSQRIIPQ"
     gene            complement(15420..15989)
                     /locus_tag="JBH85_07165"
     CDS             complement(15420..15989)
                     /locus_tag="JBH85_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HAU0945977.1"
                     /translation="MRSLRTNYIYVLFKTTGLLFLLLLSACNRSGYIPENEVPKLPCR
                     VDGACDATIIKMMTDLNKKGIKVASVGQNYLISIPASALFADQSPRLNWASYSLLNEI
                     AAFLKQFRKIAITVTSYSSKYVSVKRERALTLARSRVVSEYLWSQGVDSRIIFTQGLG
                     SDKPITSYTLGGDRSPNARVEITFRRAVA"
BASE COUNT         4763 a         3548 c         2809 g         4938 t
ORIGIN      
        1 tgtttaatga gaatcctctt cccaaaacta ttaaaaaaaa ttataaagca acgtggataa
       61 caactattgc tgctgtaggt attgtaattc tagcttttgt tactagccat gttttattag
      121 aaaacaaagc taaaactgtt ttatttggac atacccaact tgctatgctg gaaaactaat
      181 ggacaattca ttacgcgcat tatgtgatgc tataaaaaaa attctctctc aattaaaacc
      241 acaaactaat caattatctt ttgttgtcat caccggaaaa aacgcccaag gcaaatcggc
      301 actgttaaag caaagtaata tggaagaaat gcccgtattc agcgaagagc atgccaaact
      361 gtattttaat caaaagggaa tcatagtaga gcttggtgaa aattggctta ccaatagcaa
      421 aacattattg ctcacaacac ttaaacaatt aaataaatgc aatcgccatc tcaaaattac
      481 aggcttgatt ttatgtgtgg atgtcaatga tttactgatc gccgaaccag cacaattcac
      541 tgaacaaaaa aaatctcatt tgcaacttat tcaacgttta ggtgttaacc tgggatatca
      601 ggctgaatta gctttaatat tcaccaaaat ggataccttg gctggctttt ctgagtttta
      661 tcaaatggat catgtcaatg atctatctaa acctcttggc ttttcccttg attgtgtcaa
      721 ccaattaagt aaaaaaattg aaacgttttc ccttcaattc aatcaattaa ttgaagcttt
      781 aggacagcaa gttatcaata aaatgcaccc ggcacgttct actattaagc gcagtttgat
      841 acgcgaattt cctttgcaat tagccagctt gagagcccca attcagtcgt taattcaggg
      901 gatttcgcca aaattattcc atgttcactc tatttttttc acgagtgccg agcaaggtgg
      961 agtcagtgta gataggctaa acaaaaaaat tcagcatgaa tacgctctgg ttgttcagga
     1021 tactttccct caagcgacca atttcagatc ctattttgta gaaggtgcac tgcaaacaat
     1081 ccaggaacaa tgcatccagg taccacagac tacaaaattt tctcaaaaac cattcattgc
     1141 tgttgcagta agtttggccg ggctcagttt attaacgctg gtctataacc actacaaaac
     1201 ctctcatatt cttgatgagg ctagtaaaga attgcttgcc tatgaagcac tgaataatca
     1261 gggcactagt ggtgcacaag cgctatatca cttatcgcag gctgcaaata aaatgaatca
     1321 cattacatca aactccatat cgctgcctac tgtgcaccaa ttaaaattaa accttcacaa
     1381 caatgctcaa aatcgtttac aaggagaatt tcttccctcc ttagctaatg agttagaaca
     1441 agtcatcaca agtcctggca acacccctat cactcgttat aaggctttaa aaatttattt
     1501 aatgttagga aactcaaaat atttttcatc ccaacccatt ctggattggt ttcaacaaca
     1561 atggcaggga cgtgcaccag gcactacgca aaaacagttg gctcttttaa aacaaactct
     1621 tagcaatcct cctcaaaata tacccatcaa atcacaaata atcagtgatg cgaggaatta
     1681 tcttaatgca cttccaacaa gctatttata ttactctatt gcgaaagaat atttccctca
     1741 ggaaaaacaa aagattgtga ttgaaggttt ttctatacct acggatgaag tgccaaccta
     1801 ttttactaaa accggattta caaaaattat taacgaatta cctaaaatta ccagtacact
     1861 tcaatcagaa aactgggtac ttgcgagaca ggatttgtct caattacaca atatgctgat
     1921 tcaggcttat tgttttgatt acgtcacttg gtggcaaacg ttcatgaaga aatcccaacc
     1981 attacgttat caggattatc agcaaggtcg tcaattaaca aaattaatac aacaatccaa
     2041 ttcgttttat aaattcgcta atcttattca gcaggaaacc aaaccggatt taaccgaagg
     2101 catatccacc tttaatcaat tcattgccaa tcaatttact gatttaaatt taacaacttt
     2161 atccagcatt aaggaattag attttagaat ttctgaatta gaacgattta ttgcaacttt
     2221 atctgttgta aatgatggag gtaaaacagc gtttaccatt acacgctcgc gttttctcaa
     2281 tgaaaattcc tctgaccctg tgagtttgct ctacagccag gcacgacaat tacctgaacc
     2341 attgagttcg tggacaaagc aaatagctgg tgacatttgg gttatactga ttagagatag
     2401 tcgtcaatac attaataatc agtggcaaaa aaccgtctat agagagttcc aaaactctat
     2461 tgcccagcgc tatccttttg actcgtcaca aactgcagaa atagatattg cagattttaa
     2521 tcgctttttc tcaacacatg gcttattgaa cacctactct gaacaataca ttaagccatt
     2581 tcttgacact tcatctccag aatggaagcc taaagctgtg aatgatttca tcttgcctat
     2641 ttcaaatgaa gtaattgatg agttaattcg cgccaatatc attactaata tgttctttcc
     2701 tgatcacagt gatgaaagca aaattgattt tagcttgcaa aagatctctc tggatcctgt
     2761 agtttctaat ctagtccttg aaattggcgg cactaaattg atggataatc aaacaagcga
     2821 ttcactaatt cgcttcacct ggcctcaaaa caacgctaaa ttggctcttg attctattga
     2881 agggaatcat tacgagctcg cagaatatgg aacctgggca atatttaaat tacttgaaaa
     2941 agtcaatgtg cttgtggatg aacaagatag ttcaagcctc caaatacttt ttgaagtgaa
     3001 tagcaactcc ggccgctatt tattaaaaac aaacaaccaa attaatcctt ttactccagg
     3061 aattctaaat gggtttactt taaacgacca tattgcataa ttatgaaaca aaataccaaa
     3121 cacagcatta ttgctggatt atacggaaat gctttggagt ggtatgattt cttgctctat
     3181 gccagttttg ctcctgtctt tgctgaaatt tttttccctt caaaaatcca ttttgtttct
     3241 cttatagcaa catttagctt atttgctata ggattcatta tgcgtccaat tggtgggctt
     3301 ttgctcgggc actatgctga tcatgtagga cggcggaaag cattaatact atctatgtca
     3361 gtaatgacca tttctaccgc attaattgca gtattacctg attttaattc atggggaatt
     3421 atcgccccac ttttattttc tgttttacgg ctcattcagg ggcttgcagt gggaggcgaa
     3481 ctgcccggct cgaccaccta tttgattgag catatgtttc aacaaagccg ggggctcgct
     3541 ggcagcctcg tgttaagtag cgctttttta ggtattttta ttggagcgct taccgcctca
     3601 atattcagca cattatttac aggtgatgct ctattaaatt gggggtggag gtatgcgtat
     3661 ctgttaggag gtattttagg aattttgggc atttatttgc gtattaaaag ctttgaatca
     3721 cccacatttc taaaggataa gcatactgct gaacttcctg caaaagtggt attcacgcga
     3781 tttaaacagc aactgttttt atctgtgata attactagca ttcttgccat gtctaattat
     3841 gtacttatcg cctatgtcac aactttttta gtcaaatcag agtattttct cttgaaagat
     3901 gcgttattaa tcaatttaat tgcccttgct cttttgacag ttttaatacc gctgatggga
     3961 tttctttctg atgttgtggg acgtaagcct attttcttaa tcggtttatt tgctctttgc
     4021 ctactaatct tcccattttt ttggctctta ttaagtggta gttggtggaa agcattatgc
     4081 agcgaattat tactagcgat agctttagcc ccaatcaatg cgacagtacc cactattatt
     4141 gcagaaatgt ttccaaccag tgtacgggcg agtgggattt ccatatccta taacattggc
     4201 caggctttat ttggcggtac catgcctttg gttgcgttta gcctgattga attaagcagc
     4261 aataaaatgg ctccggcttg gtaccttttc ctatggaccc ttatcgtgat accaataact
     4321 atttccattc gtgaaagcta tcaaaaagag cttacttaag gcattagatt gagatgaacc
     4381 gacataattt ctatcgattg aataaacaac aatagattta aatcagtttt ttagtagaaa
     4441 aaacccagca ttaatagcca gaaaataagt gcattgagcc atactaataa aaatcttacc
     4501 tgcttcaacc tacttttgca ggcaagcttt tcacgttggg atcttttgaa taagcatcaa
     4561 gaatatcatt caccaattgg ttaatcattc cctctctctc atcgtcttca attaacccaa
     4621 ctttttgctt catgcttgct aatcgagcct ccaattcttt agtcactgta ccatttggga
     4681 acagtgcagc taaaagccgt cgagcttcac ttggtcccag atgcctatac aaaagatttc
     4741 gtactgtggc atcttctgca gtagtactaa atgcccataa ttcgaccggg cccaatgtta
     4801 aggttaataa ttgtacgttg atacctgttt tagtagcaaa ctgagcaagg aaagtagcgc
     4861 caccttgtct aggaccatga actcgagtac gtaacgcaat cttggctgtt tcagaaagtc
     4921 caaaaatttg actggtcttc tcgacagctt gagatggtcc tgcatccata acataaatag
     4981 cggtagcaaa atcaatcatt accggatcaa agtcatctac tgcttgtgat aataaggaaa
     5041 tttgcacttt ccattttcgg ccttcacgca tatcaataat aacttgctca cgaacagcag
     5101 acgattttgc cgtgcgatgg aattcatcat aaacaatacg cttatgatct tctcgaatct
     5161 ctaatactct ctgtttgtga tactctttat attgttccgg tacattattc aaactttctt
     5221 ctgttaaata atagtgcctt gccaatacat atctggctag catatacata accgctgttt
     5281 gtctatctgc cgcatcacca ccacttttcg ctacttcatc caaatcaaga gacactactc
     5341 ttgcgtcacc aatatcaaaa ctagtgaccc gtgataaaat aggatattcg cgaacagctg
     5401 atgaaatcat tcttgaaaaa gcattaatta gtgattcacc agttggcgcc gtaatctttt
     5461 catataaatc ctcaattgat ggtgttctac agatagaagc agcatccgct aataacggca
     5521 ttgcatatct ttgcgctaac atcgcctcat gaacaaaacc tgctgaatag agcgcgtccg
     5581 tcacttccca ccaggttgat ttggcatctc ggacaaagcc tatttcctcc aggatgccat
     5641 cgataaattc ctctattcct ggagcatagg gtgtcggatt gaattcatca gccatgcttt
     5701 tatataattc atctaccacc atacccgcca aatctgccat accgtcatat ggctttgcag
     5761 cacctaatgg cgtagttagc aaggtcatga agttgactaa gaatgatcgt tccaaagcag
     5821 ttggataacg acatcccaat tgggtatcaa agggattaat cgaataatct ggggtcatcc
     5881 ttaatctatg ataagcaacc aaatgacgct tagatgcagg gagagcctct tttaacaatg
     5941 aaatcaaacc gctacttgag gggcctatat caataattgc tatgcgcggc aaacgcatta
     6001 aaccacctga aagacaaaga gctaaattca gtgcatttga caacacagat ttaccagaac
     6061 caggacgagc gtaaaccaga tcaatccaag tagtttgttc agttgagcct ggttgaaacg
     6121 gccacggttt accatctggt gttctaaaaa gcaaggctcc tgttttccag ggagatgctg
     6181 gtcttgtaat aggcagcatt gagataacgt ctgacaaagg agctactgat gctactgctg
     6241 agctgttcaa agtagtagct agcatacttg acacaaagcc tgcaaacgga tccccacaaa
     6301 tctctgatac atcagtagaa ccccaacctt caatagcctt tactaactca gaacttctcc
     6361 gccgcaacaa gggaatattg ccttcaggag cccaggttgt tgcaacgacg cgtagtctta
     6421 caatcgcctc atcagtattg agttgtatat atttcagcag attaaccgaa tcactaatta
     6481 aacgattctg tgcagagcta aagctcaata tcgctgccaa gagccccttc aatttaattg
     6541 tgcttaatcc ttcgctttct agcaaaaaag aaattttcca gggcacatgt gaaggaagaa
     6601 tacgagaaaa taaactaata aatggtctta catcctttgg aaacaaatca atataggttg
     6661 aagcataaat tttatcgccc actcggacag tgcgtaaatc aataatctct gcatctcttg
     6721 gcaaaacctg cctggacaac ggcggccata ataaatcaga aggatccccc tcaaaattat
     6781 tcagctcgcg aacaggtatt ttatctccag gtaaagttgc gcgccaatca tctgcagtat
     6841 aatcaggatc acctgtcatg cgaatggcat gtactgcatc gtgcacctca agcaacttag
     6901 ctatcacatt aagggcatcc aaatcattta gaattgcacg cacataagca tcatgtgtat
     6961 ctcttatttc cggaacagcc gcaaaaatcg tttgtgtgtt tttaaatgga ggagcttttg
     7021 tatccttgat catcttcatt tttgctttgt tcgcagcttt taactgatcg ctcgccaagt
     7081 taaatggtct tgtatacaaa acaaaataaa cacgctcctc tgcacaatat tgtgataaat
     7141 aattgacccg ctcctcaaat aaatctctta aattaagttc aagacgactt gctgttgctt
     7201 ccgcagggtc ataaatatcc ttgatcattt ttactatgtt ttgcttatca tggctaaaat
     7261 aaacttgtag cgcatgacca ggtctaccca tagcagcttg aaatgagttg gctaaacctt
     7321 caacgagtcg ttcaaactct tcagggcctg ccaatccagt aatcccttca atttttaata
     7381 ccgacagtaa tgatccatca tgattaacta atacggtagg gctatccgcc gtttccaaat
     7441 ctatataaga ctctgtagtt tgcttcaagg aagtacttaa ccaggcaaag aaagtatcga
     7501 cgccttcaaa aaacgattct gaccaatttg ccatcctttg tcctcaatta ttaatagtac
     7561 ttttactgtt taatctgcaa tttcttctaa agcactggca gcccatttct ctatttgctt
     7621 cctgaatttt gccctagagg gtaatagcct tatattttta aaaagtttct ctcttatttc
     7681 ttcactattc acaccagaat caatcattaa ttgcccaaat attgcagggt cacttgtgcc
     7741 ctcaccaaat ttttcttcaa caatttgcga gcgaaattta aagcttctat aaatattctg
     7801 tgcactggat ttgtatccgg tatcattggt aatagcacaa aaaagaacat ggcataagct
     7861 atttagttca gcttgggtta attctggcag gtagatcaaa gtacctccac cataaccacc
     7921 aactccaact gactcaacaa aaaagcattg cgcacaaaaa caacaagctg taactaaatt
     7981 tgataaccta ttgtttgtat aatcaccatc cagattcacg atgtcttggt ataatcgggc
     8041 ttgaaacccg caaaattgac aagtatacct atctcgctga aagatttttt gctcatagga
     8101 tttgaatcgc tcatcaattt ttctggcaga atataaacgc caggaacctg gtgaagcaat
     8161 tagttttagc tcacatcgtt gttgattatc cgccatagtt tggttcacat tcagtcaatt
     8221 ttcaaaaaat tatgtgttct atccttaact actgactaag ccagcttaaa gatatttgac
     8281 catattaata gagacaatca tttaaattta ctatttaaca caataaaaag cctataaatt
     8341 aaattgggta aagcggtatt ctctttaccc aaataatata aataatctct ctattaatta
     8401 gtcttatata ttgttccagt aggtccagca gttttaccgc cactaccacc gaacatagtt
     8461 actccggcca ctcctaaaat agaaggaagg aataataatg ccgcagcgat aaatatcaaa
     8521 gctattggtg ttccaattgg aatttgagta gggttatcct tgtgctgctt aaatttcata
     8581 atagcaccaa tagaaaaacc caatccagcc aagtaagagc ccgctgtaat caatttagta
     8641 agacttgtaa atgaacccgt aatttgtgat gccattttac ctaacgatac acctgctgca
     8701 gcatcctgac aaattagagt caataaagcc aaacaagctg cgcttactag ccagtgttta
     8761 taacctgatt tatggataac cttaatgttc acaattctct cctgttttta aattagctta
     8821 agtaccatat aaagtattgt taatcatatc aactgtacca acaatattga ttgccaatat
     8881 tcccccaaat acatgaatca aacctttacc tgtacctcct ggaggttgcc cctgcgacgc
     8941 ggaacgcgca attaataccc accctcttac aaatgcaatt agaccaataa cccggataat
     9001 catcaccaaa ggtctgccta ctagactgcc actaccaaat aaggctgaaa tagtatcgct
     9061 tccactactc acacctcctg agtaggctaa tggattgcta taaccaaaag tcgtttgcag
     9121 tacggaggaa accaatgacg ggaaatagat aagtaatgca cctaccatca aatacatcac
     9181 cggctctttg atactcgtat tactcgacat cattgtcctg gcttctccat aaacctttaa
     9241 gctataaatt gccttaaata taaaagcgca cccaatcaaa taagcgcctc cagtaatcag
     9301 cctttgaaca ggctccaact gattagcaat attagctaat atgttagctt gactcactat
     9361 ccagcatgct actgtgccgc cagtacaagt cggatcagcc atatacgcct caactatctt
     9421 cttgactaaa cttaatcact tgtccagaac ttgttaaaat acgaccttgc aaagaatcaa
     9481 ttaatttaac cattccatat cctggaattt ttgatccctc tctaactgta agtgtagaac
     9541 catttgagcc aattagccaa gcccgacctg gaattactgc ttgtatgtaa taaataattc
     9601 ttgcttgaac tattggccga gacactttta caactttctt aggtgttgta cgtgccatta
     9661 agacattaat cacttctgat tgtctagcaa tttgatttga catattacca ataatttgat
     9721 tcagatttac aatttgagca tttaaatttt tgatattatt atttactgca ttaatttgct
     9781 cactaagggc attgacttca gaacgaagac tctgctgtgt catttctatt gctgaaactt
     9841 tcttctttag atcggggtca tcttcaataa tagtcgtagg ctgaacttgt tgtatgggag
     9901 tggtggttgg tattgtctgt acaggttgtg gtgttgctac ctgtgtcacc ggaggaatag
     9961 cgggctttga ggttacttgg ctggatttgt ctgagaaaaa catccaacca attattttat
    10021 acatcaccat tataaataca actgccccaa tagcaataag agcatttcgc ttaatatctt
    10081 ttttctttgt taatccctct ttcccagatt gatacgaggc ttctgaatcg agatccgatt
    10141 caccagcctg atccatatcg tatgagtcaa gttctgcaaa tttatattca tcattatttt
    10201 gatcgtgctc tgccatcatt atccgccatc aaattaaatt gttgtaacat cctgggtaaa
    10261 taaaataccc aaacctgtac cagaataaac ttccacagtt gttggtgtat taaacaattg
    10321 ttgcgcctgt tgactccatg cctttccaac ggtagccaat cctataaccg cattttccaa
    10381 agttgagcga ccaacaccat tagctacagt aatattatta ccaccgccag tacccccaat
    10441 ggtgattgtt gtatttgccg actggaatgc atttccaaat ccttgtaaga aagaagaagc
    10501 aaacagggaa ccatatcgca ttaaatagtg atgattagtt ctactggcta gggctgttct
    10561 tgccgtgttt ggatcaattg cataagctga gatggatata gttttttctg ctcctggaat
    10621 tgacattgta ttaaaggtaa tcaccatctt gtccgcattg gacggtaagt tgaagcttcc
    10681 tattaatttt gagcctttta gcttaccagt aacaatagtc gccaatattg gaccaggttc
    10741 atcactattc acagaagtat ccagaaccgc aaacataata tcacccgttt tgataatagc
    10801 ctgattctga gcactaactg cgccttgatc tactggttga ttattagagc ctgtgcctgt
    10861 acctgtgcct ggaacagcac tttcaccacc agatgtttta gtttcctctg taccttctgt
    10921 atacacctgg gtttcaactt gcttccaatc ttgaaccagc tgagtcgctg ccgtgagcat
    10981 gtcagaagtt ctttgctgaa tttcttgctg atatttttgc tcagccaatt gctcattttg
    11041 cttttgtaaa atagcctgaa gttgctcagc acttgaggca gcatcactgg ttgttggtct
    11101 tggagtagcg ccaggaattg agggaattcc tgtgatactt gagtcgagtt gttgcaaatc
    11161 aggcccttgt aaccctgcaa cggctgattc ttgtggagaa aatccagcat ttctcagctc
    11221 agctgaggta tatccggctt tttttagctc atcagccgaa tatccagcat tctttaattc
    11281 tgatgcacta aatcctgcgc ttttcaaatc tgaggcgcta aaaccagcat ctttcaattc
    11341 ttttgcgcta aatccggcat ttttcaaatc cgaggcgcta aaaccagcat ctttcaattc
    11401 ttttgcgcta aatccggctg cttttaattc cgctgcagaa aaaccagcat cttttagatc
    11461 ttttgcagaa aacccagcag cctttaactg agcagcagtg aatccagccg cttttaattc
    11521 agcagcagaa aaaccggcgt cttttagatc ttttgcacta aaacccacat ctttcaattc
    11581 ctgggctgag aaacctgcat cacgcaattc ctttgctgta aaaccggcat cttttaattc
    11641 tttcgcacta aaacccgctg cctttaattc agctgcagta aacccagcgt ctttcagttc
    11701 ttttgcagta taaccagctg ctttcaatgc tgcagcggaa catcctaatg tttgctttat
    11761 tgtcaaagcg ctaacaccag ctgctctcgc tttttttaat gactctacgc tgcaatctgc
    11821 aacacgcccg tctgcaataa tggatacagg atttaatcca gcatcttcca actgctttgg
    11881 agtaaatcct gccgcaagca attcttgagg ggtaaatcct gcagcaagta aggactgtgc
    11941 gtcataaccc gcagctttta aagcttctgc actacaacca ttgagttctt tgatacgttt
    12001 cgcagatacg cctgctgaaa ataatttttt cagtttatct ggatcacagc cagccgcctt
    12061 tatttccgca tcactcaaag gagttgctgc actgatttga gctggagtaa atcctgcgtt
    12121 tgctaaatcc gcatcagtga atccggcagc tttgagagcc tgtgcgctac atcctgcata
    12181 ttgtctaatt aaagcggcac taactcctgc ttccctttcc tttttcagcg cctccacatc
    12241 acaaccagca tttttcacat cttgcggagt aatcccaggc ggaagctctg cctgagcagc
    12301 tttgatttga gcatcagaaa atcctgcttt tgcaagatca gccggtgtaa atccagcgtt
    12361 taacaaatct cttgcagtaa atccagcatc ttttaattct gcagcagaaa agcccgctcg
    12421 tcttaagtcc gcagcgctga aacctgcatc ttttaattct ttagcggtat aacctgctgc
    12481 ttttaactgc tcagcggtac aaccgcttat ttttctaatc gcagacgcgc taacccctgc
    12541 ctgacgcaat ttggccaatg cagcagctcc acatcctgct ttgcgcacat catctgcagt
    12601 tataccatct ggtaaaccac ttgcttttgc aatttcagca tcagagaacc cggctccttt
    12661 taattctcca tcagaaaaac ctccatcctt catttcttgt gctgtaaagc ctgcattacg
    12721 taattcacaa gcatcaaatc cacaatttct tagtcgaccg gcactataac ctgcctcctt
    12781 caactgcctt gcattataac cagcagattt taattcttta cactcacaga cttgctctag
    12841 ttcctgcaaa ccgtacccac tatcttttaa ctggacacag ctacaagcag ctttcaaatc
    12901 agttaattgg gctccctgat tcacaacttt tgtaatcaca gatttgctac aactgccatc
    12961 ttgtaattct tgtatccata aacttcgttg aggaccacct aactcttctt gtgctaaagc
    13021 agcgaaacct actccacttt gagagccaat aacaccaact ccttccccca atgcttgagt
    13081 acggataatc gttggaatag cactcccacc tgttttttca gcgacttgtg cctgggttat
    13141 attttgttct tcttgcaatt tggcatattg agcggttgga tctaaaactc ctggaataga
    13201 ttgaattcct cccggcactg tagaaacttc agctgcagca atcgaaccgg tagtagcacc
    13261 ccttatttta aaaaaaccta ttactactgc aatgattaat aaagctgctg taaaaatgat
    13321 aattactcga gtccgagtat tggaaaacag tgactttaga ttttcttttt tgctcgccat
    13381 ttgcttataa cccttctacc ttgagttgca tgacttttcc atgccaagac actaataaaa
    13441 ccggagactt ttgcatttcg taagcatgcg ttccatctgc gctagtcatg ctggctaacc
    13501 agcccggcga caatatagtg agattcgttc taacatacat tttttcatta gataaccaag
    13561 ctcgagcatc tcctccacta accaccagac gcctacttcc aggtggagga actccttcta
    13621 acacatgaag aagcaaatca ttggctgatg gaggaatgcc ttcttcggtt ggcatacttt
    13681 tagcgttagg gccataacct tgaactcgca aatccactcg ataatccacg gctttctgcc
    13741 cgggaataag ggtaagcatt acaggagtat ttaatcctct taaccttact gctagattgc
    13801 catagttata tagcttcgta gcttgaatca ttaaagtatt actggtttta tcccattgaa
    13861 tattaaatga agaggggtcg cccaaatcat atgcagcaat aggccaagga gctcctgttg
    13921 agtccaggaa tactaaagaa gacacaaaac cttgtgataa tcttattact ggtggtgttg
    13981 atcctggaga caaattaaca aattgtgatg tcgctgtagg cttaggtgga gtgcctggcg
    14041 ttgcagcttt ggcatactca gaagtttcat agatttgttt taatttgact acttgctcag
    14101 gatttaaggg atataagttg cgtgtcatat ccttaaatgc tttcttatca ataacttcgg
    14161 catcatcttg actaattatc tgcccatcac cgcccgcagt tgctgtttga tttgcagccg
    14221 gagcattggc ctgaccggat tgattaggtt gttgtgttga atcagaagct gcattatcac
    14281 cgccatcacc ggctcctgac tgtgcatcag gggaagggtt ttgtgataat ttttgttgta
    14341 gcattcgcag ttgctgcaac gcttgctgag catcatctga ttgatcagcc gcatagatac
    14401 tgcatgacat actgaatgtc aagcctatca ccaaacaata tttacataat tgatcatatt
    14461 tcttcatcac taggataccc caccgctggc aggtccaaca acaaattgtg aaatacctat
    14521 ccctctaggc gaattcaacg ttgaaactct agttattaac attgttacta cgttattttg
    14581 ttgtgtaaat tcactggcac tttgataggt gactaatatt ggcatttgta ccctccagga
    14641 atacctacca ttgagcacac ctttttgcaa aatgattggg gctcgggttg ctactgctga
    14701 cacaactaat tttttcgctt taaccgcatc aaggttattg gattgctcta atgcacctaa
    14761 aaattggtcc cagccttccg cagtaaaaaa gccggaagaa gcctgtagct catcgcgata
    14821 atttacgaaa ttataggtaa atgcggcaat tgctgcctga ttagcccatt gtagtacagc
    14881 ggagtccgat tggtttggtt catccaaagg aaataaaggg gtaatacgac cgttaatact
    14941 tgttgcaaag tactttggag caggtggatg agtaatcata tagacaacaa gcgatgccaa
    15001 gaccacattt accacaatag caatcaataa cgccaaaatg actttgcgtt gactgtcttt
    15061 ataaaactta tttcttaatg caactacagt taaggcatct tcagccataa tatcctctaa
    15121 aaattattgc ggtataatcc tttgtgaatc ttcatctggt ggatccggcg gaagcaatgc
    15181 ttcagatgac atgttaggag tcgacatagg cttaagctgg ataggaggag ttatgccgct
    15241 ggttgcataa aaatctcgct caggttcatg catatgaaca taataaatca acccagacaa
    15301 accacaactc aatccaagag aaagaattag cagtgttaag ccacgtctgt aaatatggac
    15361 attaaaattc ttatttcgtt ttattaaagc ccatgtttct cgactcattt ttacctcaat
    15421 tatgccacag cccgcctaaa tgtgatctcc accctggcat taggtgatct atcaccacca
    15481 agagtataac tagttatagg tttatcacta cctaagcctt gtgtaaagat gattctgcta
    15541 tcaaccccct gagaccatag gtattcactt actactcttg atctcgccaa tgtcaatgct
    15601 cgttctcttt ttaccgacac atatttacta ctgtaactgg ttaccgttat agcaatttta
    15661 cgaaattgtt taagaaacgc cgcgatctca tttaaaaggc tataggaagc ccaatttaac
    15721 cgaggagatt gatcagcaaa cagagcgcta gcaggaatac taattaaata attttggcct
    15781 actgatgcaa ctttaatccc ttttttattt aaatcagtca tcatttttat tattgttgca
    15841 tcgcatgcac catcaacacg gcatggtaat ttgggcactt cattctcagg gatataacca
    15901 gaacgattac aagcactcag caacaataag aataataatc cagttgtttt aaacaataca
    15961 tagatgtagt tagtacgaag tgatctcacc tgttatcccc atctttgaaa atagactaat
    16021 tgtgttatct atgtctaact atctcaaaca ttccattt
//
LOCUS       DACVWI010000062        15847 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.062, whole genome shotgun sequence.
ACCESSION   DACVWI010000062 DACVWI010000000
VERSION     DACVWI010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 15847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15847
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.062"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            159..1709
                     /locus_tag="JBH85_07170"
     CDS             159..1709
                     /locus_tag="JBH85_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAU0945978.1"
                     /translation="MSPRICCYNQYPGLYQDFDAMREDLQRIQKMGFKQVWVNPFYTP
                     CQYNPVPNMANRIHSPYAMQDESIYPRYAKNDKSVQQYTAKANELGLMPVFDLVARHL
                     AVDHRFVNGDKFFLEKYNIDTKKWFKRHPNGNLVMHNMDENYNPLTNNPWSDVATFNY
                     DDPVICEQIIEYYWKPFIERNIEYLGFQGIRIDAPAMVNNKVLSRLTEIAKEACQRKF
                     QHAPLIIAETIGRGYMEENLALKGIVTHTMNSVFWMPGPEGGYGYSYNLWQQDDNWFT
                     QNKGLLQQVGPTIGFPGSHDEPRYIQQLVEKGIQDDELLAKRMREKLAVSAFCSDGGW
                     ILQYGDEYGATKPVNVFDPTPVEYHKQSHLRRFDLSDYISEINTTLAQLPNPHFPEWA
                     QRVFLPNHPDLVTFIVHQGWGYTGTSFVIATNTDPSQQIQLTEKELGEIMLANGRNNT
                     TEKQMKPQVLYLCGTVRASPELKKEIQIVTSRPATSEKSIHFFQSHPEEKQMSEKLPL
                     EKTPPKFK"
     gene            complement(1863..3581)
                     /gene="lem27"
                     /locus_tag="JBH85_07175"
     CDS             complement(1863..3581)
                     /gene="lem27"
                     /locus_tag="JBH85_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem27"
                     /protein_id="HAU0945979.1"
                     /translation="MVRVLNLQKGVNMFNVDNSGKGNCLYYAYSISLMYYLRAKNNVK
                     ITEDIFNKLGLKEEDRARLRKLLSKDPDRAFTRDEIKTIIEPILGRATRDLAAEHTKV
                     EFKSSPHDTPLFSSLHYAVEFGFKRSLQINESELTLLIDNDFSNPDYTEAEIYKVSGL
                     LDALQEYILTRTPSVIEEFNRQWENKKQELKEQSLTEKEIQVHQATILDNILRKETID
                     FLLAENEKHLDEYREHLRREFVWGSEETLMVLHRAIQGERMVRNHEGRIEPVYDHEII
                     LHVHRNGASPSYQAGSPEMILNNEGNVHWTSIIPDAIFTSKLTDKEEKLLDMLERMQS
                     EYGSKELGVEKYSSISDWLSDLMKQIELIKTSPTAVTKQKEIELFFQLLAKATPKLAS
                     EPALRMSLGTLFSNFLECIPALMVENKLSTGLAKFGLYSPVISQKKEDLSLTKSSEEK
                     VNSEQPQKGVLSQFSKHTLLKVSEDVSPKPYPTELNPYVRKNKQSGPRVARALTQMYQ
                     KGLEGDERYTPEKCKDIAQRYIEYSKSHKRNFILDDVILFVQEMDKIIKQQESISENS
                     SKRAAM"
     gene            complement(3575..3826)
                     /locus_tag="JBH85_07180"
     CDS             complement(3575..3826)
                     /locus_tag="JBH85_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945980.1"
                     /translation="MSICWDLIINHNTLLQTNFTGHRVQMNDSESTPKGILFVSNKLF
                     IDLLTYITEYQSITRKELMNLSNNEIKPRRKSNKRLLMW"
     gene            4348..5391
                     /locus_tag="JBH85_07185"
     CDS             4348..5391
                     /locus_tag="JBH85_07185"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HAU0945981.1"
                     /translation="MSYSILKKLPPIEKIIRELPLSHPAYLQIAQDRQEVKAILEGRD
                     KRLLMIVGPCSAWPKKAVLEYAERLVQLNSKVKHALKLIMRVYIQKPRTTKGWTGPVN
                     QPDLFSTPDIEAGIKYTRDMMIKVIQMGLPIADEALFTHNAKGFLELLSWVAIGARSS
                     EDQEHRIFASALDCAVGLKNPTHGSLAVGVNSLVASQHPHVAVFDGYEVQTHGNHHAH
                     LVLRGSNQAPNYSVSHLEEVMYYMGMHQIVNPSVIIDVSHDNCLVNGKKNHQLQPEIA
                     FNILESIKNRPDLKQLVKGFMVESFIKEGNQKLDSINPDNIDLSGLSVTDPCLSWEKT
                     ESFLLELAEREAL"
     gene            5388..5972
                     /locus_tag="JBH85_07190"
     CDS             5388..5972
                     /locus_tag="JBH85_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HAU0945982.1"
                     /translation="MKNLVEEKEAFRFGVSGDIGSFSEEAALLYARKKGLNAHLVHLL
                     DMEGVLNAIENETIDLGILPVVNLLGGLVKPAFQAMGKYSFTPIDEIWHDINQCLLVK
                     TNTQNHKITHIVSHPQGFAQCKKFLRNKFKNAKKIEWIDTAKAAKDLAEGILPPHAAV
                     IASARCAPLYDLKISARNIQDSHLNRTAFILVKK"
     gene            6006..6266
                     /locus_tag="JBH85_07195"
     CDS             6006..6266
                     /locus_tag="JBH85_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HAU0945983.1"
                     /translation="MSTIEELRKQIEQTDAYIIEKLAQRQELSKKIGALKAKEGKKIL
                     DRLREKKLFEYYDFLSRQYHLQQDFVNQLFKIIISNSKKVQK"
     gene            6266..7432
                     /locus_tag="JBH85_07200"
     CDS             6266..7432
                     /locus_tag="JBH85_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAU0945984.1"
                     /translation="MNHYEKMSLLKDSATVAINSLAQQKINAGIKIHNLSAGEPKLPP
                     HPSIINAVTQAMEQGHTLYPPIMGIPELRHMGCEWMYRSYDCSFQNEQCLVVNGGKLG
                     IYLLMQLLLQPNDEVIIPSPYWVSYPAMVSLFGGTPVPVETTEAEEWKLTPQALQKAC
                     TTKSKILILNNATNPTGALYTQSELIHLLQTAKKHNLLVISDEVYSELTYDGHHYVSC
                     GSLPQFRERVIIIQSCSKNFSMTGWRVGFIFAPEIFIKPLSALVSQSTSGVTTLSQWA
                     AVAALQEVNQVNIWVQQNMEKRRNCLLRTLHDYLGLTITPPISSLYVFLSLKDIGCKN
                     QNSEEFCKQALDKANVAMVPGIAFGKEGYVRLSFGGNEDDLKSGIYALAQWLHR"
     gene            7734..8630
                     /gene="tehB"
                     /locus_tag="JBH85_07205"
     CDS             7734..8630
                     /gene="tehB"
                     /locus_tag="JBH85_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HAU0945985.1"
                     /translation="MPREYDNLICYKQLSIDDHGKLKFFLEKHSTKEGTWGKLSLSEG
                     EIDFIFQNGLGQELSRIRLDKNNRQLSIPPASWHKIIPISASFNAQLGFYCKPHRYFN
                     KKYGLTEVHRDLLYVYHTYLSHLGSLTTLDVGCGSGRNLLYLTQLGHIVTGIDINQTA
                     LENIQIIAQKENLSLLNILSQDLNQPQALAPDHYDFVCSTVTLQFLNASRIPSLLIEL
                     QEATKKNGYHFLVFPVQSELYSLPSSFTFLPKQEELYHFYQDSGWSILEYKESVGHLH
                     KQDEMGRPVQGLFALLLAQKVL"
     gene            complement(8663..9094)
                     /locus_tag="JBH85_07210"
     CDS             complement(8663..9094)
                     /locus_tag="JBH85_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HAU0945986.1"
                     /translation="MQLTQFTDYSLRALIYIALKKGSCTIKDITDAYSISNNHLIKII
                     HNLSKMGLIKTIRGKNGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAP
                     ACKLKSVLYEAQRAFLQILEQYTLADVLHNPSELSALLRIS"
     gene            9141..9548
                     /locus_tag="JBH85_07215"
     CDS             9141..9548
                     /locus_tag="JBH85_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 truncated hemoglobin"
                     /protein_id="HAU0945987.1"
                     /translation="MYFKYIFKEYIMTESLFERLGGQNAVNTAVDIFYRKMLMDDRVN
                     YFFDDVDMEQQILKQKGFLTMVFGGPNQYTGKSMREGHQHLLARGLNDSHVDIVIEHL
                     GETLKELGANEEDIQKVAAIANSVRGDVLGRSS"
     gene            9545..10501
                     /locus_tag="JBH85_07220"
     CDS             9545..10501
                     /locus_tag="JBH85_07220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster binding
                     domain-containing protein"
                     /protein_id="HAU0945988.1"
                     /translation="MSTVRFNNQSFALTPDESLLQCFLRHGVEYPNSCQAGICQSCLI
                     KAKDGKINPDWQEGLPETLKSQGYFLACLAKPSTSLYVTSPDNAECETQAQIMSLQRL
                     NHNVIQVKLNVEHPAPWLPGQYLSLINPEGTMRNYSIANIPADDGYIELHIKIYPQGK
                     MGQWLLQRAAINTFITIRGPFGQCYYHNPHNLAFDILLAGTGTGLAPLIGIIRSALTQ
                     KHEGTITLVHGGVTDEDIYYKEELEMLSLLFSNFRYDPCVLQSQGLYPEGSIEKRVLT
                     HLHSPNNTKVYVCGPKETTNKLKTRIFLAGVPSTNIYSDVFL"
     gene            10726..11745
                     /locus_tag="JBH85_07225"
     CDS             10726..11745
                     /locus_tag="JBH85_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAU0945989.1"
                     /translation="MIVDFETHFITEACIDYLTQRQEVPKLVPDLNGAYTMCFTPDVS
                     LFHTSALMEELLSLNEQRLAIMDQAGVTIQVLSLTTINGIDSCPGDENKSTALAREVN
                     DQLYSAIQRHPERFKGFASISPYDVKEGVKELERAISQLGFVGWLTHSNFGQDNYLDD
                     KTYWPLLEAAEGLNIPIYLHPNVPIMREFGKYGFALGGSALGFEFDTALCLMRMILGG
                     VFDAFPKLKIMLGHLGETMPFLMERLDHLYRIPDLKAYRPSIQRIPSEVLRQNVYITT
                     SGRFFVPALRYVLEVMGEDRVLFASDYPMESLLDATRFIQDSDLSNQTKQKIFSINAK
                     NLNLI"
     gene            complement(11869..13284)
                     /locus_tag="JBH85_07230"
     CDS             complement(11869..13284)
                     /locus_tag="JBH85_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2538 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945990.1"
                     /translation="MIPVPVMRKTHELVMIQAAAGFFMKTKYEMSQDKTEFLAKEQDS
                     SYPGYQVSVLDLEKIVKHYQEKYGIRLIINGTTPKYQSLIKERQVNFEQQKQQFLELK
                     YAKFLQIFFQPPNLNGANSPFSINKHMGAFIGFYEEIYNKVLPFLDAKGKIISGLSLE
                     ELRQLNEACQELSCKGILDAKINEFIERNFDYMGLTARESASEIKDICDELQEGEVLG
                     YFFTGQRTSGRCHFDLYICLPGKAIRPIFYNTALIRYHDLGGMFHLNFPFVEGNFFTP
                     DLLKLYSAMDLQQLIPQADRTSCGTLTMMYAKELLKDDARGLKEFTLSFTYYNDKGEK
                     EYFFLPSPQVLRYSQISLYNEALKAILSHENDGQAGLVRKGAKKYMFHTVEKILIQSF
                     KIALEKEDADVLEENQKIWDILPSFQEKWQEAYKEMVAKRDVMHQGVNKYLLYSTHRM
                     SHIASDQSINNEADADRLILR"
     gene            complement(13866..14273)
                     /locus_tag="JBH85_07235"
     CDS             complement(13866..14273)
                     /locus_tag="JBH85_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2539 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945991.1"
                     /translation="MKLIINKKNRAESMTLDVEATTTVNELLLILYTHRSKRYEPLSF
                     SEYQKFISVYQCLLYGDQFINKLLPGTNLADYQLEDPCHLTWEEFTEKQCLLADAEAS
                     RILLWQANKKASKPEIEKDLMSVASSDAMNPDM"
     gene            complement(14485..14868)
                     /gene="mscL"
                     /locus_tag="JBH85_07240"
     CDS             complement(14485..14868)
                     /gene="mscL"
                     /locus_tag="JBH85_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HAU0945992.1"
                     /translation="MSLLKEFKEFAMRGNVMDLAVAVVMGVAFNKIVTALVDGIIMPC
                     VGLLLGGINIAGLSFTVGDVQIKWGNFLQNVIDFIIVAFAIFVLIKLINLLQRKKANE
                     PEPVTPEIQLLTEIRDLLARNSSKI"
     gene            complement(14983..15816)
                     /locus_tag="JBH85_07245"
     CDS             complement(14983..15816)
                     /locus_tag="JBH85_07245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2541 family Dot/Icm T4SS effector"
                     /protein_id="HAU0945993.1"
                     /translation="MLMEFEDWFLEQISNGKKCILIGENHYSYASEDCLDCILKLQRQ
                     GKINKKIVFFDENLAALDNLEPYTLESLSKLNTVEPSLIALIKNNVEVYGLEDNFSNP
                     FKNLKSIKKVTARIKDLGLQIGNRIFNDFDDCLYWAYHLYGKSLVRVQRGNEGFCNQI
                     LHKMDEDTIVIARVGAKHIPTVRKDGVVIEEGMLQRLGKDMASACFITHFPKNRTYSE
                     QKTYQPESDMFGSYDSIECCMVEKKMIHQPDLTLWAEQDKQRKDTNNYKDTKKHRCTI
                     M"
BASE COUNT         4901 a         3191 c         2877 g         4878 t
ORIGIN      
        1 ataaaagtaa atatgatacc cataaagagc aaacaacaca ctttggttaa ttttctatgc
       61 atgcatagga attaaatgat ttgaaacaat acaataagat cgaatttaat acttctacta
      121 tacttcatag acatagaaac agaaattgag aagtcaacat gtctccacgg atttgttgct
      181 ataaccaata ccctggctta tatcaagatt ttgatgcgat gcgggaagat ttgcagcgaa
      241 ttcagaagat gggttttaag caagtttggg tcaatccatt ttatacacct tgtcaatata
      301 atcctgtccc taacatggct aatcgtattc atagccctta tgccatgcag gatgaatcaa
      361 tttatccacg ctatgccaag aatgataaaa gcgttcagca atacactgca aaagcaaatg
      421 agcttggttt aatgcctgta tttgatttgg tcgcaagaca cctggcggta gatcatcgtt
      481 ttgtgaatgg cgataaattt tttcttgaaa aatacaatat tgatacgaaa aaatggttta
      541 aacgtcaccc caatggaaat ttggtgatgc ataacatgga cgaaaattat aatccgttga
      601 ccaataatcc ctggagtgat gtggcaacgt ttaactatga tgatcctgtc atttgcgaac
      661 aaatcatcga atattattgg aaaccattta tcgagcgaaa tattgagtat cttggttttc
      721 agggaatacg tattgatgcc ccagccatgg taaataacaa ggtattgtct cgactaacag
      781 aaatcgcaaa ggaggcttgc caacgcaaat ttcaacatgc cccgcttatt attgcagaaa
      841 cgataggcag aggttatatg gaagaaaatc ttgctttgaa aggtattgta acccacacga
      901 tgaatagtgt gttctggatg ccgggccccg aaggtggcta tggttattca tataacttat
      961 ggcaacagga tgacaattgg tttactcaaa ataaaggatt attacagcag gttggtccta
     1021 caattggttt tcctggctct catgatgagc cacgctatat tcagcaactg gtggaaaaag
     1081 gcatccagga tgatgaattg cttgcaaaac gcatgcgcga aaaactggct gtcagcgcat
     1141 tttgttctga tggcggttgg attttacaat acggtgatga atatggtgct accaagccag
     1201 taaacgtttt tgatccaacc cctgttgaat atcataaaca aagccatctg agacgatttg
     1261 atctgtcaga ctatatctct gaaattaata caacactggc ccagctaccc aatcctcact
     1321 tccccgaatg ggcgcagcgg gtctttcttc cgaatcatcc agatttggta acctttattg
     1381 ttcaccaggg ttggggttat actggaacct cattcgttat tgcgaccaac accgatccct
     1441 ctcagcaaat ccaattaaca gaaaaagaac ttggagaaat aatgctggca aatggccgaa
     1501 ataatacgac tgaaaaacag atgaaaccac aagtgcttta tttatgtggc acagttcgcg
     1561 catcacctga attgaaaaaa gagatccaaa ttgttacatc cagaccagct acaagtgaaa
     1621 agtccatcca ttttttccag agtcatcctg aagaaaagca aatgagcgaa aaactgcctt
     1681 tagagaaaac accacctaaa tttaaataat atttaccgga gatatgcatt gatattaatt
     1741 acagcctaga aaatcattgc ggttgctatt ttgcttcctc accaattaag tcaccacttg
     1801 ataagaaagc aaaatcaatc tgacgatgtt gtttttccca cacttcagca aaaacagcac
     1861 ccttacattg cagcacgctt agaggagttt tcactaattg attcttgttg cttaatgatt
     1921 ttatccattt cctgcacaaa gaggatgaca tcatcaagaa tgaaattgcg tttatgagat
     1981 ttcgaatact ctatatacct ctgcgcaatg tctttgcact tttctggcgt atatctttca
     2041 tcaccttcaa gtcctttttg gtacatttgg gtgagtgctc tcgctactcg tggaccagac
     2101 tgcttgtttt ttcgaacata cgggtttagt tctgtagggt atggttttgg gcttacatcc
     2161 tcagatacct taagcagagt atgtttcgag aattgactta atacgccctt ttgaggctgt
     2221 tcagaattaa ctttctcctc agatgatttg gtcaaggaca aatcttcttt tttctgagat
     2281 attacaggac tatacaatcc aaatttagct aagcctgtgc tgagtttatt ttcaaccata
     2341 agggctggaa tgcattcgag aaaattggaa aaaagagtac caagcgacat cctcaaggca
     2401 ggttccgatg ctaatttagg tgttgcttta gccagaagct gaaaaaacaa ttcaatttct
     2461 ttttgttttg tcacagcagt tgggctggtt ttaataagct ctatctgctt catcaaatca
     2521 ctaagccaat cacttatcga agagtatttt tctaccccaa gctctttgct gccatactct
     2581 gactgcatcc gctccagcat gtcgagtagt ttttcttctt tgtctgttag ttttgaggta
     2641 aatatcgcat caggaatgat agaagtccaa tgaacattgc cttcattatt taatatcatt
     2701 tccggactgc ctgcctgata ggacggactt gctccatttc tatgaacatg caaaataatt
     2761 tcatgatcat agacaggctc aattcttccc tcatggttac gtaccatgcg ttcaccttgt
     2821 atggcgcgat gtaaaaccat cagtgtttct tcactacccc atacgaactc tcttcgaaga
     2881 tgctctctgt attcatcaag atgtttttca ttctcagcta ataaaaaatc tatcgtttct
     2941 tttcttagga tattatctaa aatagtcgcc tgatgaacct ggatctcttt ttcagttaag
     3001 ctttgctctt tgagttcctg ttttttattt tcccattggc gattgaattc ttctatgaca
     3061 gaaggtgttc ttgttaaaat atactcctga agagcatcca acaaaccact taccttgtat
     3121 atctcggcct cagtataatc aggattcgaa aaatcattgt ctattaacag cgtcaactcg
     3181 gattcattga tttgtagtga gcgtttaaaa ccaaattcca cagcataatg gagagatgaa
     3241 aataaaggcg tatcatgagg tgaagatttg aattcgactt tggtatgttc cgctgccaaa
     3301 tctctcgttg ccctgccaag aatgggttct atgattgttt tgatttcatc acgggtaaac
     3361 gccctgtcag ggtctttgga taatagtttt cgtaaacggg ccctatcttc ttcctttaat
     3421 cctaatttgt taaaaatatc ttcagtaatc ttgacattat tttttgcccg caaataatac
     3481 attaatgaaa tactgtaagc ataatacaag caattgcctt taccactatt atccacatta
     3541 aacatattga ctcctttttg taaattcaaa accctcacca cattaatagt ctcttattgc
     3601 ttttcctcct tggtttgatt tcattatttg aaagattcat gagttctttt ctggtaatgg
     3661 actgatactc agtgatataa gtgagtaaat cgataaatag tttatttgat acgaaaagaa
     3721 ttcctttagg ggtggattcg gagtcattca tttgaacccg gtgaccagtg aaattggttt
     3781 gcagcagggt attatgattt atgattaaat cccaacatat tgacacaaca ttaatccctt
     3841 agtttttatt tgatataaaa tgcaatgtat acgatcaaaa tgattcgcgc aatactttga
     3901 tctcattttc cgatcagtga gttcgattaa tgccaaagtg atttttatat gtaaatcatc
     3961 gggttaattc ccaggggaaa attggctata aaattaacta tcgctaacag gtgttgacag
     4021 gtttaccata gtcctgtata cataatatac aaattaaatt ttttgtgatt attcatgttc
     4081 tacactacta caccaaatca attaaataaa aaagcaagcc ttgtacaggc ttttgcttgc
     4141 tttttttatt ttagcttttt cagccctgag ctgggtggta ggtaggcaat actaacactc
     4201 caacccccag ctgagtctgg gggtttttga tacccaagat ccccagtcta ataagggggt
     4261 tgggtacaaa agaggagtgt gaacgatgaa ccatcaatgt caaattcatc atccatctaa
     4321 agcgctttct ggcttgagga ggatacgatg agttattcca tcttaaaaaa actgccacca
     4381 atagaaaaaa ttatccggga attgccacta tcccaccccg cctatctaca aattgcccaa
     4441 gaccgacaag aggtcaaagc tattttggaa gggcgagata aacgtctttt gatgatagtt
     4501 ggtccttgtt cagcatggcc taaaaaagcg gtattggaat acgctgagcg tttggtacaa
     4561 ctcaacagca aagtaaaaca cgctttaaaa ttaatcatgc gcgtttacat tcaaaagcca
     4621 agaaccacca aaggctggac tggaccggtg aatcaacccg atttattttc aactcctgat
     4681 attgaggcag gtataaaata tacccgggac atgatgataa aagtcattca aatggggctc
     4741 cctatcgctg atgaggctct tttcacccat aatgccaaag gatttcttga acttctgtcc
     4801 tgggttgcaa taggcgcccg tagttcagag gatcaagagc atcgaatttt tgcctccgcc
     4861 cttgactgtg ccgtaggatt aaaaaaccct acacatggtt cactcgctgt cggagtaaac
     4921 agcctggttg catcacagca tcctcatgtc gctgtcttcg atggctatga agtacaaacc
     4981 catggtaatc atcatgctca tctcgttctg cgtggttcaa accaagctcc caattactct
     5041 gtttctcatc tggaggaagt catgtactac atgggcatgc atcagatagt gaacccttct
     5101 gtcattattg atgttagcca tgacaactgt ctggtgaatg ggaaaaaaaa tcatcagcta
     5161 caaccagaga ttgcatttaa tattctggaa agcatcaaaa acagacctga tttaaaacaa
     5221 ctggtcaagg gattcatggt agaaagtttc atcaaagaag gtaatcaaaa attagattct
     5281 atcaatcccg ataacattga tttaagcggg ttatccgtta ccgatccttg cctcagttgg
     5341 gagaagacag aatcgttcct gttggaactg gcagagaggg aagcgttatg aagaatctcg
     5401 ttgaagaaaa agaagccttt cgcttcggtg tttctggaga tatcggatca ttttctgagg
     5461 aagcggcttt gctttatgcc aggaaaaaag gccttaatgc ccatctcgtt catttgctgg
     5521 atatggaagg cgttttaaat gctattgaga atgaaactat agatttgggc atcttacccg
     5581 ttgttaacct tttaggagga ttggtaaaac cagcatttca ggctatgggc aaatattcat
     5641 ttactcccat cgatgagatt tggcatgaca taaaccaatg cctgctagtt aagacaaata
     5701 ctcaaaatca taaaatcaca catattgtgt cacatcctca aggctttgcc caatgcaaaa
     5761 aattcctaag aaacaaattt aagaatgcga aaaaaataga atggatcgat acagcaaaag
     5821 cagcaaagga tttggcagaa ggaatattgc caccccatgc cgcagtcatt gcatcggcac
     5881 gttgtgcacc actttatgat ttgaaaatca gtgcgagaaa tattcaggac agtcatctga
     5941 acagaacagc ttttatatta gttaaaaaat aagtgataag gtctctatcc gctaaggagt
     6001 tcatcatgag tacgattgaa gaactaagaa aacaaattga acaaactgat gcatacatca
     6061 ttgaaaagtt ggctcaacgc caagaattgt ctaaaaaaat cggagcttta aaggctaaag
     6121 aaggaaaaaa aatattagat cgcctgcgcg aaaaaaaatt gtttgaatat tatgactttt
     6181 tatccaggca atatcacttg cagcaggatt tcgtgaatca attattcaag ataattatct
     6241 caaactcaaa aaaggtccaa aaataatgaa ccattatgaa aaaatgagct tgctaaaaga
     6301 ttccgcaaca gttgccatca attctctagc ccaacaaaaa ataaacgcgg gaatcaaaat
     6361 tcataatctc agtgctggag aacccaaact gccaccccat ccctccataa taaatgccgt
     6421 cacacaagct atggaacaag gacataccct ttatcctcca ataatgggaa ttcctgaact
     6481 acgtcatatg ggctgtgaat ggatgtatag atcctatgat tgctcattcc aaaatgagca
     6541 atgcctggtt gtgaatggtg gaaaacttgg catttattta ctcatgcaat tattactgca
     6601 gcctaacgac gaagtcatta ttccttctcc ctactgggtt tcctatccag ccatggttag
     6661 cctgtttggc ggcacccccg tgccagttga aacgacagaa gccgaagaat ggaaactaac
     6721 gccacaggca ctgcaaaaag cgtgtaccac aaaaagtaaa atactcattc tgaataatgc
     6781 caccaatccc accggagctc tgtataccca gtccgagctg attcacttat tgcaaactgc
     6841 caagaagcat aatcttttag tgatctctga tgaagtttac agcgaactaa cctatgatgg
     6901 gcatcattac gtatcctgtg gttctttacc ccagtttcga gagcgtgtca tcatcattca
     6961 aagctgttca aaaaactttt ccatgaccgg gtggcgagtg ggttttattt ttgccccgga
     7021 aatattcatc aaacctttaa gcgccctggt cagtcaaagc accagtggag taaccaccct
     7081 tagccaatgg gccgctgtgg ctgcgctgca agaagtaaat caagtcaata tctgggttca
     7141 gcaaaacatg gaaaaaagaa gaaattgcct cctccgcacc ttgcatgact atctgggatt
     7201 gaccataaca cctccaattt cctcacttta tgtttttctt tccctaaagg atattggctg
     7261 caaaaatcaa aattccgagg agttttgtaa acaagctttg gataaggcaa atgttgcgat
     7321 ggtaccggga atcgcctttg gtaaagaggg ttacgtccgc ttgtcttttg gaggcaatga
     7381 agacgattta aaatcaggta tttatgctct ggcgcaatgg ctgcatcgct aattaaagta
     7441 attcattact ttgcaagaag catgaccaga cctcttacat aactagtctc ttttatttta
     7501 aacgtttctg tggtgcctca tttaacgact ctaaaatagg acttacgaaa aaccccaagg
     7561 tcgagacaaa aaatgttttt aatgaggaag tttagataca ctaaatgacc gaattaaaaa
     7621 cattttttaa caaagagatt gggatttttc gtaagtccta tataaaattg atgcattcga
     7681 caataggcta aaaaactatt atgttattta tcgatacctc aggataaaaa accatgccaa
     7741 gagaatacga taatttaatc tgctacaaac aactatcaat tgatgaccat ggaaaactta
     7801 aattttttct tgaaaagcac agcactaaag aaggaacatg gggcaaactt tccctaagcg
     7861 aaggtgaaat tgattttatt ttccagaatg gcttggggca ggaactgtcg cgtattcgtc
     7921 ttgataaaaa taataggcaa ctatctattc ctccggcctc ctggcataaa atcattccga
     7981 tcagcgcatc gttcaatgct cagcttggtt tttattgcaa acctcatcgc tactttaaca
     8041 aaaaatacgg cttaactgag gtgcaccgtg acttattgta tgtgtatcat acctacttgt
     8101 cgcatttagg ctcactaacc actctggatg tcggttgtgg ttccggtaga aatctgttgt
     8161 atttgaccca acttggccat atagtgactg gaattgatat caatcaaacg gcactggaaa
     8221 atattcaaat aatcgctcaa aaagaaaacc tgagtctgct taatattttg tcgcaggatt
     8281 taaatcaacc tcaagccctt gcaccagatc attacgattt tgtctgctct acagtgactc
     8341 tccaattttt aaatgcctca cgtatcccct ctttattgat tgagttgcag gaggcaacga
     8401 agaaaaatgg ctatcatttt ctggtttttc ccgtccaatc tgaactttat tcactcccaa
     8461 gctcattcac gtttttacca aaacaagaag agctgtatca tttttaccag gacagcggct
     8521 ggtctatcct cgaatacaaa gaatcagtag gacatcttca taaacaggat gaaatgggaa
     8581 gaccagtgca aggattattt gctctgttgc ttgcccagaa agttctataa agatcacttt
     8641 cataaaatat taccctggat tgctaactga tcctcaataa agcagacaat tcacttggat
     8701 tatgtaaaac atcagccaga gtatactgct ctaaaatctg caggaaagca cgttgcgctt
     8761 catacaaaac gctcttgagt ttacatgctg gggcaataca acagtttgcc ttttctttgt
     8821 taaaacaggg aaccaaatca aaattgggct caagctccat aatcaattgg cctaaattaa
     8881 tggtttcagg tgaggccgcc atcaaaatac cgccgttttt cccccgtatt gtcttaatta
     8941 aacccatctt cgataaatta tgaatgattt tgatgagatg attgtttgat atggaatagg
     9001 catctgtaat gtccttaatg gtacatgaac ctttctttaa ggcaatgtag atcaaagcac
     9061 gcagggaata atcagtaaat tgagtcaatt gcataaaaaa tccttctggt ttgttgacgt
     9121 ctattatttc tttttataag atgtatttca aatacatctt taaggagtat atcatgactg
     9181 aatcattgtt tgagcgatta ggcggccaaa atgccgtcaa cacagctgtg gatattttct
     9241 accgcaaaat gctcatggat gacagagtga attatttttt tgatgacgtg gatatggagc
     9301 aacaaatcct taagcaaaaa ggatttttaa ccatggtgtt tggcggacca aatcaataca
     9361 ctggaaaaag tatgcgggaa ggacatcagc atctacttgc cagaggctta aatgactcac
     9421 atgtggatat tgtaatcgag catttagggg aaacccttaa ggaattgggc gccaatgaag
     9481 aggacattca gaaagtagct gcaatcgcca atagtgttcg tggcgatgta ttggggcgct
     9541 catcatgagt accgtacgat ttaacaatca atcttttgca ttaactccgg atgaaagcct
     9601 cttgcaatgt tttttgcgcc acggggtaga ataccctaac tcctgccagg caggcatttg
     9661 ccagtcatgc ctgattaaag ccaaagacgg gaagattaat ccagactggc aagaaggatt
     9721 acccgaaaca ctcaaatctc aagggtattt cctggcttgt cttgccaaac caagcacttc
     9781 gctttatgtc acatctcctg acaatgccga atgcgagaca caagctcaaa taatgagcct
     9841 gcaacgctta aatcacaatg ttattcaagt caaactgaac gtggaacatc ctgccccatg
     9901 gctacccgga caatacctgt cgctcattaa tcctgaagga acaatgcgca attattccat
     9961 agccaatatc cctgctgatg atggatacat tgaactgcac ataaaaattt acccgcaagg
    10021 caagatggga caatggcttt tgcaacgcgc agccattaat acattcatca ccatccgagg
    10081 cccttttggt caatgttatt atcataatcc acataatctg gcttttgata tattgctggc
    10141 agggacaggg actggcctcg ctccgctgat aggtatcatc agaagcgcat taacacaaaa
    10201 gcatgaagga acaattacgc tggtgcatgg cggggttact gatgaggata tctattacaa
    10261 ggaagaactg gaaatgttgt ctttattgtt cagcaacttc cgctatgatc cctgtgtgct
    10321 gcaaagtcaa gggctttatc cagaaggctc aattgaaaaa cgggtgctaa ctcacttgca
    10381 ctctcccaac aatacgaaag tgtatgtgtg tggtccaaag gaaacaacca ataaattgaa
    10441 aacacgaatt tttcttgcgg gtgttccttc aacaaatatt tatagtgatg tttttttata
    10501 atatttaaat agccctgttg atttataatc tggtgcaaac cagattatgt ttctcgctca
    10561 tcaaaataat ctcttctttc cgctggtagc atttcttttc tttaagacgt tttccggcaa
    10621 tttgccatca gaacttttat agccatgtgg cggtatctaa tcttccggct atacttaagc
    10681 atataatttt caatcatttt tctcacgtct aaaaggatta cgttcatgat cgtcgatttt
    10741 gaaacgcact tcatcactga agcttgtatt gattatctga ctcaacgcca ggaagttccc
    10801 aaattggttc cagatctcaa tggagcttat acaatgtgtt ttacacctga tgtttcctta
    10861 tttcacacaa gtgcattaat ggaagaatta ttaagtttaa acgagcaacg actggcaatt
    10921 atggaccaag caggggtgac aatccaggta ttaagtttga ctactatcaa tgggattgac
    10981 tcctgccctg gagatgaaaa caaaagcacc gctttagcaa gagaagtcaa tgaccagctt
    11041 tactctgcca ttcaaagaca tcctgaacga tttaaaggtt ttgcttctat atcgccttat
    11101 gacgtcaaag aaggtgtaaa agaattggaa agagcgatat ctcaattagg ttttgtaggt
    11161 tggcttacac actccaattt tggccaggat aattacctgg acgataaaac ctattggcca
    11221 ttgctggaag ccgcggaagg tttaaacatt cctatctacc tgcatccgaa tgtacccatc
    11281 atgcgcgaat tcggtaaata tggttttgcc ttggggggaa gtgctttagg gtttgaattt
    11341 gacacggctt tatgtttgat gcgaatgatt cttggaggtg tattcgatgc gtttcccaaa
    11401 ttaaaaatta tgctgggaca cttgggtgaa accatgccgt ttttaatgga gcgtctcgat
    11461 catttatacc gtataccaga cttaaaagct tatcgacctt ctattcagcg tattccctca
    11521 gaggtattac gtcaaaatgt ttacataacc actagcggac gtttcttcgt tcccgcctta
    11581 cgttatgttc tagaggtcat gggggaggac agggtattgt ttgcctccga ttacccaatg
    11641 gaatccttac ttgacgctac tcgatttatt caagattccg atttatcaaa ccaaacgaag
    11701 caaaaaattt tctctataaa tgccaagaat ttgaacttaa tatgaagcat ctctcttgca
    11761 tcatatcagt aaagagctga ttttcttgca gacattaatt gagccaggct caattaatgt
    11821 cttgctttat agaaataaaa tacgaatagt ttcattctgc aatatttttt aacgaagaat
    11881 taatctatca gcatccgcct cattgtttat ggattgatca cttgcaatat ggctcatccg
    11941 atgggtggag taaagcaaat atttatttac cccttggtgc atcacatcgc gtttggcgac
    12001 catttcctta taggcctcct gccatttttc ctggaagctg ggtaatatat cccaaatttt
    12061 ttgattttcc tccagaacat cggcatcttc tttctcaagt gcaatcttaa aagattggat
    12121 gagaattttt tcgacagtat gaaacatata ttttttagcg cctttcctga ccaaaccagc
    12181 ctgtccatca ttttcatgag ataaaatggc tttcagcgct tcattatata aacttatttg
    12241 agaatatcgt aatacttgtg gtgatgggag aaaaaaatat tccttttcac ctttatcatt
    12301 ataataagta aaactcagcg taaactcttt cagccctctc gcatcatctt ttaataactc
    12361 cttggcatac atcattgtta aagtaccaca tgaagtcctg tcagcttgag ggattagctg
    12421 ttgcaagtcc attgcagaat ataattttaa caaatcaggt gtaaaaaaat tgccttcgac
    12481 aaaaggaaaa ttcaaatgaa acatccctcc aagatcatga tatctgataa gcgctgtgtt
    12541 ataaaatatc ggtcttatgg ccttaccagg taaacagata tagagatcga aatgacatct
    12601 cccactggta cgttgaccag taaagaaata acccaaaacc tctccttctt gcagttcatc
    12661 acagatgtct tttatttcac ttgcgctttc cctggcagtt aaccccatat aatcaaaatt
    12721 tcgctctata aattcattaa tttttgcatc aagtattcct ttgcatgaca gctcttggca
    12781 tgcctcattg agttgtctta actcttccag ggataatcca gaaatgattt ttccttttgc
    12841 atccagaaat ggaagaactt tattgtatat ttcttcgtaa aaacctataa atgcacccat
    12901 atgtttattg atagaaaaag gagagtttgc gccattcaga ttaggtggtt gaaaaaatat
    12961 ttgtaaaaat ttggcgtatt tgagttccag gaattgctgt ttttgttgtt caaaattaac
    13021 ctgacgctct tttatcagag actgatattt gggtgtagtg ccattaataa tcaagcgaat
    13081 accgtatttt tcctgataat gcttaactat tttttcgaga tccagaacgc tgacttgata
    13141 ccctggataa gaactatctt gttctttagc caaaaactca gttttatctt gactcatttc
    13201 atattttgtt ttcataaaaa acccggctgc agcttgtatc attactaatt catgagtttt
    13261 tctcatcacc ggaactggaa tcaattaatt gcccaccagg atgattttca ttgatttcat
    13321 aatgacaact ccttgctcta tctcaatgaa acaactgatt ataaaaatca ttattttttc
    13381 attatgaatc ccttataaat taacaaaccc tctgcctaat aaagactgac agagaccatg
    13441 gatatttcaa tttagagaca aaaagaaagg aaacgacgat ttgttaagta acgcttcgct
    13501 gaattaaagt taataaacta ctctcaatca ccaaatccga gagtaaatcg ctcatcttct
    13561 ttgcctcagc gacgaacccg tttacttaat taaagctaag tgttaccact agtcctccgt
    13621 atatccttgt ggagaagata ggccgcagca aaaagatcat ttttatgatc ttttagtgag
    13681 caaaatttta acaataaaag cttaagaatt tattaaatgg gcaacacctt atattgagac
    13741 cataggggac tcaagacctt tcactggtta actgattgaa tgtatttaat ttttttcatt
    13801 gcatgactca agtaatgaat tacaaaacga acactcacta tgttatacag gatgttttat
    13861 tcttgttaca tatcaggatt catagcatca ctgcttgcaa cagacataag atctttttca
    13921 atttcaggtt tacttgcttt cttattagct tgccaaagaa ggattctact ggcctctgca
    13981 tccgctaaaa gacactgttt ctcagtaaac tcctcccagg tcaaatgaca tggatcttca
    14041 agttgataat cagctaaatt ggttcccgga agtaatttat ttataaattg atccccatac
    14101 aataaacatt gataaacgga aataaatttt tgatactcac taaaagacaa aggctcgtac
    14161 cttttactgc gatgagtata aagaattaaa agcaactcat tcactgtcgt tgttgcttca
    14221 acatccaacg tcatcgactc cgccctattt tttttattaa ttataagttt catttgcgat
    14281 tattaagtaa aaattagcct tgtctgctag tatagtttaa atagcagtaa atcaatatat
    14341 ggctttgtga gatttaagtg gccgattgaa acaccagaat tctgtataca tcttaccgaa
    14401 ataaaacata agctgtttaa caaaccattt tgaacggggg tatccgactg caaatatata
    14461 gagatttatt tttgccagcc aatttcagat tttactgcta tttcttgcaa gcagatcccg
    14521 tatttcagta agtaattgaa tttctggagt gactggttct ggttcatttg ctttttttct
    14581 ctgcagcaga ttgattaatt tgatgagtac aaaaatagca aaagcaacga taataaaatc
    14641 aatgacgttt tgtaaaaaat ttccccactt gatttgaacg tctcctacag taaaactcaa
    14701 tcctgcaata ttgatgcctc ccaataacaa accaacgcaa ggcatgataa ttccatcgac
    14761 caaagcagtg acaattttat taaaagcaac acccattaca acagcaactg ccaaatccat
    14821 cacattgcct cgcatggcaa attctttgaa ttcctttagt aaactcatca gacatcccta
    14881 tcatgattaa gttatgcgat gaaatgtata ttcgcaaaat ttttccaatc tttcaattac
    14941 agactgttct gagcctgtta gcttgtagaa aggaacttaa atttacatta ttgtacaacg
    15001 gtgtttttta gtatctttgt agttattggt atcttttctt tgtttatctt gttccgccca
    15061 tagagtcaaa tccggttgat gaatcatctt cttttcaacc atgcaacatt ctatagaatc
    15121 ataacttcca aacatatcgg actctggctg atacgttttt tgttctgaat aagtcctgtt
    15181 tttagggaaa tgtgtaataa aacaggctga agccatgtct ttgcctaagc gttggagcat
    15241 cccctcttca ataactactc catcttttcg taccgtaggg atatgcttgg cccctactct
    15301 ggcaatgact atagtatcct catccatctt atgcaaaatt tgattacaaa agccttcatt
    15361 accccgttgt actctgacca aagattttcc atagagatgg taggcccagt acaaacaatc
    15421 atcaaaatca ttaaatattc gattcccaat ttgcaaaccc aaatctttta tacgtgccgt
    15481 cactttttta atagatttaa ggtttttaaa tggattgctg aaattatctt ctaacccata
    15541 aacttcaaca ttatttttaa ttaatgcaat taaagaaggt tcaactgtat ttaatttgct
    15601 taaagattcc agagtgtaag gttccaaatt gtctaatgca gctaaatttt catcgaaaaa
    15661 tactattttc ttgtttatct taccttgcct ttgcaatttt aaaatacaat ccagacaatc
    15721 ctcgcttgca taggaataat ggttttcccc tatcaagatg cattttttac cattgcttat
    15781 ttgttccaga aaccaatctt cgaattccat tagcacatct cactaaaaag acaatagagc
    15841 cataact
//
LOCUS       DACVWI010000063        15826 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.063, whole genome shotgun sequence.
ACCESSION   DACVWI010000063 DACVWI010000000
VERSION     DACVWI010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 15826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15826
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.063"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(14..211)
                     /locus_tag="JBH85_07250"
     CDS             complement(14..211)
                     /locus_tag="JBH85_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945994.1"
                     /translation="MFRDIVLFFAGFEFFHTMAHVFFAFLVPLDLKFIILTPTLNTWS
                     IVINALITLALLWWAKRLRSK"
     gene            complement(337..576)
                     /locus_tag="JBH85_07255"
     CDS             complement(337..576)
                     /locus_tag="JBH85_07255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0945995.1"
                     /translation="MGCIIEFNNGLRFDFIQNKCKQKLWIDVLLRSSKANIEHLAHIL
                     DLPIETVIKVHQGNLYLEEESAERLGQLFLVTFGT"
     gene            complement(660..1463)
                     /locus_tag="JBH85_07260"
     CDS             complement(660..1463)
                     /locus_tag="JBH85_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0945996.1"
                     /translation="MHSVNEDGTICVNLNDYNELSDSIRFRAKIDYLIEKLNCPKEIP
                     NFSISIFFHGGQRYYISNLYLWAIPYRTEGLYRGDVDHDRTLYNGKEFFIQRDIKYDA
                     MQIPIIQILESRYSLSTTFAMVRQCEECDFIIEAYHSEKVEDPKKLYYQVRDNFEQFI
                     CLFFDAMLPEIVTAIPNQKWLAIFNDSEFRKNVIMRKAVKKTLAQLTPRELQCLSLIS
                     KGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLGLLS"
     gene            complement(1490..2173)
                     /locus_tag="JBH85_07265"
     CDS             complement(1490..2173)
                     /locus_tag="JBH85_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0945997.1"
                     /translation="MKDIVLIPGALATPKLWYQQEIFFQRSRRLHYVDVLNSDSIVEM
                     AHRFTSIAPKKFTLIGFSMGGYVALELYRHIPNKIEKLILINSAAKLVSEKGQLERER
                     SLDLMNKGKFDFLIKLIFKNSIYDKEKHNVLLPVAQEMAQEVGVENYKNQLNAILNKP
                     DHSSLLSSIECPTLLIASEQDHVMPIERSEHMAKNIKRSELIYIEECGHMAMLEQPDK
                     INKILVDWL"
     gene            2215..2727
                     /locus_tag="JBH85_07270"
     CDS             2215..2727
                     /locus_tag="JBH85_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006869212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0945998.1"
                     /translation="MVAIIQAKSEYLSQIYTIILELAKYENILDKIKITESQLGELLF
                     CNQPNHFIGVALVEEKICGLVMFNYTQNNICVNVTQGIYIENLYVSPPYRRQGIGCAL
                     FKYVACKAAAHNCSRIEWWVSRNNREARHFYKKIGGVALLDWQIFKCDQIGINNLMSI
                     GVANEHILFE"
     gene            2705..3979
                     /locus_tag="JBH85_07275"
     CDS             2705..3979
                     /locus_tag="JBH85_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006869213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0945999.1"
                     /translation="MNISSSSKALFAGVSGTALQWYDFALFGYFAPIIAATYFPNDNQ
                     FASLLSAFGVFAVGYLLAPIGSLFFGYIGDQFGRKRALTLSILAMAIPTAMISIVPSY
                     QYIGITAPLLITLLRIIQGFVASSEFTGSAIFLVEHAKTEKKALYGCLTSSAYSTGLI
                     LAGLAASFFTASFMPDWGWRIGFGLALIAGILIFYLRTHVAETPEYENIVQHDKRRLP
                     FLAALKEAPLAVVGIIGIAWLVSIMTFGTYVFTATYLHSYFHISLGLATLIITIALAV
                     DATLEPFIALLAGRIGLLKVIRLGMVAMLLLSIPIFFLLATGNVVLIALGLVFMSILI
                     AITYAPLNAYMVSLFPHQYRYSGFGVAFNVGISLFGGTTPVVMMWLVNTTSNFISPAW
                     YYMFGAIVGLGSIMICEQGRRKLMRLESALAY"
     gene            3993..4478
                     /locus_tag="JBH85_07280"
     CDS             3993..4478
                     /locus_tag="JBH85_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946000.1"
                     /translation="MMLFSSALSKHRLTFTRLSDCMEYIPLAAKWAEDEWGYIRNKGV
                     EYREGVMHTLRRDLYIGTYAGQPVAMFALLEHEFPNSRGLSARELMYVYVDKNYRGLG
                     FGKQIIEEAKRLATAVGSDLILLDTLKPSLNRLYEKHGAKVVCEGSLFSHPTDVLSIS
                     I"
     gene            4499..5503
                     /locus_tag="JBH85_07285"
     CDS             4499..5503
                     /locus_tag="JBH85_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 domain-containing protein"
                     /protein_id="HAU0946001.1"
                     /translation="MAKELKGNNQSDFAKVHQMITEAKSRVWQQVNKTLIQLYWSIGQ
                     YVSNKITHDGWGKGIVEELADYISIELPTIKGFSARNIWRMKQFYETYHENTELSAVL
                     TEITWTNHLHILSKTKSMEEKEFYLRLAAKHHYSERDFSRLINVGTFERTVLADQKLS
                     AVLTELPDSKGRFKDSYVFEFLNLPDDHKEKDLRRALVANLKKFLLELGPDFSLMGEE
                     YPLQVGMKDFRVDLLLFHRALNCMIAIELKCIEFSPSHLGQLQFYLEVLDKNIKKAHE
                     NPTIGILICKTKDEEVVQYAMNRHASPTLIAEYETKLISKAVLQNKLHEFALQWDNDE
                     "
     gene            5611..5952
                     /locus_tag="JBH85_07290"
                     /pseudo
     CDS             5611..5952
                     /locus_tag="JBH85_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235678.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5838..6998
                     /locus_tag="JBH85_07295"
     CDS             5838..6998
                     /locus_tag="JBH85_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAU0946002.1"
                     /translation="MGRKQTTGLFKRGQVWHIEKQVLGHRIRESTGTKSLQEAEQYLA
                     RRIEEIRQATIYGVRPKRSFKEAAVRFLNENQHKASIDTDAILLKSICPFIGDLTLEQ
                     VHIGTLQSFIKAKQEAKLKTKSINNTLELVRHILNVAATEWIDENSLTWLLVAPKIKL
                     LPVKDARAPFPLSWSEQSRFLEALPVHLNQMARFKVNTGCREQEVCQLRWEWEKRVPS
                     LNTSVFIIPSHINRDGELRQLVKNGEDRLVILNDEAKAVIEEVRGIHSEFVFSYNGKP
                     ITRMNNTAWRNARKKANLSDLRVHDLKHTFGRRLRAAGVSYEDRQDLLGHRSGRITTH
                     YSQAELSNLLEAANLIIQSRRESKELTILRVKQGGSHTIPTKSPQCEIRAVG"
     gene            7428..8381
                     /locus_tag="JBH85_07300"
     CDS             7428..8381
                     /locus_tag="JBH85_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HAU0946003.1"
                     /translation="MMRTTTGYFFMAEKSYTKPALTVSQQLEFLFSQGLQIEDQKLAI
                     RALETVSYYRLSSYLLPFKQSHNAKNPRQFKENATFEQVWQLYQFDRELRLLVADAIE
                     KIEVAFRAALTNVTSIRFNPFWYVERNYFKAKAGANRERDFFDDYLKTIKTISTNKQE
                     LFIQHYHKNYDKPYFPPIWMMVEALSFGVCSKMFNNIQSKDVRNEIASFLGQHTTVIE
                     SWIKSLTYTRNLCAHHSRLWNRWLVIPPLIPKNAPIKTHIDGNYRFQLIAFIIDQLLE
                     TIAPESNWKIKLFELFERNEQFSGIEMGFINNWRDDPIWHC"
     gene            complement(8435..8818)
                     /locus_tag="JBH85_07305"
     CDS             complement(8435..8818)
                     /locus_tag="JBH85_07305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946004.1"
                     /translation="MLNFIILLEKQLKKQALLLISFAFNKAILTKQPDAKIVIPPPSV
                     AVISWKANTQRDDHIRLLQDEGDMVWQKKNNYGLRSHIELAILRYKKVMGTAMKAREL
                     PQQKTECGIATRALNESLHWVCQSL"
     gene            complement(8912..9112)
                     /locus_tag="JBH85_07310"
     CDS             complement(8912..9112)
                     /locus_tag="JBH85_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HAU0946005.1"
                     /translation="MIKELNRIVSNQTFDEQPLTALNSEAIDFRAALEQFEKIRKIDK
                     KDLETVVILMDYQGKKVPTVQG"
     gene            complement(9546..10100)
                     /locus_tag="JBH85_07315"
     CDS             complement(9546..10100)
                     /locus_tag="JBH85_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HAU0946006.1"
                     /translation="MQRIKKISIANAQGKAKELLEGTKKAMGTELNLFSTLANSPAAL
                     EAYIGIMTSLSKGALNPKLREQIALVSAGYNGCNYCASAHTYLGEKAGINKDELKENL
                     SGKSSDKKTQVALNFATQLIERRGGVSEFDIKTVREAGFSDEEMVEILAHVAMNTFTN
                     YFNEAFKTDIDFPVVDTHKGRTAS"
     gene            10272..10793
                     /gene="msrB"
                     /locus_tag="JBH85_07320"
     CDS             10272..10793
                     /gene="msrB"
                     /locus_tag="JBH85_07320"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HAU0946007.1"
                     /translation="MKSIIKGLLFFFMSVASLTAYAEQAYKRPSDAVIKQKLSTIQYN
                     VTQQQGTESPFNNAYWNNEEQGIYVDVVTGEPLFISLDKYDSKTGWPSFTKPLEPGNI
                     IYKDDSSMFTSRTEVISKHGKSHLGHVFGDGPPPTNKRFCMNSAALEFIPVKDLQKRG
                     YGKYLPLFKNAGK"
     gene            10951..11178
                     /locus_tag="JBH85_07325"
     CDS             10951..11178
                     /locus_tag="JBH85_07325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946008.1"
                     /translation="MKFYLHPSCHLLSMHWNSFDLIKASRDGYKHPPRPKKMAHSQSL
                     VIWRRQLQIRYYLMDKLEQNMLSQSKTRLLS"
     gene            11722..12210
                     /locus_tag="JBH85_07330"
     CDS             11722..12210
                     /locus_tag="JBH85_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain protein"
                     /protein_id="HAU0946009.1"
                     /translation="MVNNFIRIAAMKKIKSLYIPQLIFIFMMPVLAWASDISYSLVGI
                     QGYDPVSYFQQGGPVRGSGNYTGYYEGVSYIFSNQENKKTFLANPEKYLPAYGGYCAY
                     GVSVGSKIVSDPLAWRIVDGTLYLNLNSKTQDVWAKNIPGNIKKANINWPKIKGIDPK
                     DL"
     gene            12515..13036
                     /locus_tag="JBH85_07335"
     CDS             12515..13036
                     /locus_tag="JBH85_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946010.1"
                     /translation="MKEKKRSKTSKYLSNLVLILALSMMVSSAVISYFFIRQNELLIS
                     SLKMQAQNKQILIKDVWNNIVKKETRADIAILLSVLPVKDEVEVQAIKKDYLRDFSEL
                     TGTSSTADIVKEVKKEIERYGEYIDNLYLDQVTIQNKATAIEGSNKLYSEIAFFLQIF
                     SVVLIILRKDFTE"
     gene            13226..13519
                     /locus_tag="JBH85_07340"
     CDS             13226..13519
                     /locus_tag="JBH85_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2282 domain-containing protein"
                     /protein_id="HAU0946011.1"
                     /translation="MIKNGIFTAVAAAITLTTSVAFAEGEMEKCSVVKDGKGLIKENK
                     ADCKGSSHSCAGQNKAGDSESWILVPKGQCDKINAGDFSAVGQDIKDKIEVSN"
     gene            13534..14388
                     /locus_tag="JBH85_07345"
     CDS             13534..14388
                     /locus_tag="JBH85_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HAU0946012.1"
                     /translation="MTLNPLIGIGLRYPHYTQVLEERPSIGWFEVHSENFFSNGGNEI
                     KALLNISEYYPISLHGVGLSLGSSDGISKVHLDRLSNLVHQVQPKFVSEHLSWGHVGG
                     IHMPDLLPVPYTEESFNTFKRSISIAQDFLKREILIENPSSYIEYKSSRLHESYFLVE
                     LCNQTGAKILLDVNNLFISSWNHGWNTKEYIDSIPFNLVKEIHIAGHSIKELSNDSTL
                     RIDTHNNYVCDEVWALYDYTVQRFGPIPTLLEWDADIPSLNVLIEEASKCESYLSSYK
                     VNRGVANA"
     gene            14381..15160
                     /locus_tag="JBH85_07350"
     CDS             14381..15160
                     /locus_tag="JBH85_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HAU0946013.1"
                     /translation="MHELLKLQESFYRNIFKKDVDLSFISSDFSQERLDVYRQTIFEN
                     MINALRITYPGVWKLIGNECANSVAYTYCKKDKYLPKTGWLDDFGGDFPDFLSTLQQL
                     SELPYLSDYAHYEWLKHLAYGAVDSKSISPQDLMTIPEEEIDHIKLNFCPSVCIFQSK
                     YPLFDIHDTIENCSSKAITLKTEAAYGVIGCKENEIHTYWIAEDQWHFIKKLFEGAKL
                     LESVQYAQTINQNFDLTSAVAFVLQEQLVDNIIKTGGNNAQ"
     gene            15150..15647
                     /locus_tag="JBH85_07355"
     CDS             15150..15647
                     /locus_tag="JBH85_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HAU0946014.1"
                     /translation="MLNNSVETSINKPFISKIIQIYLSVTKVLEKIALPVLVLFMRLW
                     MAKIFWYSGMTKISNWQSTVFLFREEYKVPFVPPEITACLATSFELACPVLLIFGFAT
                     RLATLPLLAMTAVIQFTYLDLIDHRYWAMLLALILFYGPGSLSLDHLISKKFGLLASS
                     RGDVA"
BASE COUNT         4919 a         2698 c         3091 g         5118 t
ORIGIN      
        1 ttttgataga taactactta cttcgtaatc gttttgccca ccaaagtaga gctagagtaa
       61 tcagggcatt gataacaatt gaccaagtat ttaaagtggg agtcagaatt ataaatttga
      121 ggtctaacgg aactaaaaat gcaaaaaaga cgtgtgccat cgtatgaaaa aattcaaatc
      181 ccgcaaaaaa tagaacgata tctctaaaca tggcattact cctttcgttt agtctccatt
      241 tacttgttaa ttatagagta cttttctgta tatgtattat tgaaaaatag acgttgatta
      301 ttcttaaaga gctgttatta tagctcggtc tgcttcttaa gttccaaatg ttaccaggaa
      361 taattgtccc aaacgttcgg cggattcttc ctcaagataa aggtttcctt gatgtacctt
      421 gattaccgtt tcaattggta aatcaaggat atgtgctaaa tgctcaatat tagctttact
      481 agatcgcaat aaaacgtcaa tccatagttt ttgtttacat ttattttgaa taaaatcaaa
      541 tcgaaggccg ttgttaaatt ctataataca tcccatgtta caactccgtg taaatattat
      601 gacaacatgg tggagtataa aatgtttggc aaaatatcct atccccaaat ttgggtattt
      661 taagataata ggcctaaacg aaatgctttt gataccgctt cggtaatatt aacgcagctc
      721 attttagttc ggatggattt ggcatgggta ttcactgttt cgcttgatag atgaagatat
      781 tcggatattt ttttaatcgt cattcctttg gaaattaagc ttaaacattg taattctctt
      841 ggagtgagct gtgccagggt ttttttgact gctttgcgca tgattacatt ttttctaaac
      901 tcactatcgt tgaatatagc taaccatttt tggttgggta tggctgttac tatttctggc
      961 agcatcgcat caaaaaaaag gcatataaac tgttcaaaat tatcgcgtac ttgatagtag
     1021 agttttttgg gatcctctac tttttcagaa tggtaggctt cgataataaa atcacattct
     1081 tcacattgcc tcaccatagc aaaagtggtg cttagactgt aacgtgattc gagtatttga
     1141 ataataggaa tttgcatcgc atcatatttt atatcgcgct ggataaaaaa ttctttccca
     1201 ttataaagag tgcgatcatg atcaacgtct ccacgatata aaccttcggt tcgataaggg
     1261 attgcccata ggtaaagatt agaaatataa tatcgttgac caccatgaaa aaatattgaa
     1321 atagaaaaat taggaatttc tttggggcag ttaagctttt caattaggta atcaattttt
     1381 gcacggaatc gaatagaatc agacagttca ttgtagtcat ttaagttaac acaaatagtt
     1441 ccatcttcat tgacgctatg cattgataca tccctaacat cgatactact tacaaccaat
     1501 caaccaatat tttgttaatt ttgtctggtt gttctaacat ggccatatga ccacattctt
     1561 caatataaat taattccgaa cgcttgatgt ttttcgccat atgctccgat cgttcaatag
     1621 gcataacgtg atcttgctcg ctcgcaatta atagtgttgg gcattcaatt gatgataata
     1681 atgatgaatg atctggttta ttgagaatag cattcaattg atttttataa ttctcaaccc
     1741 ctacttcctg agccatttct tgtgccacgg gtaatagaac gttgtgcttt tctttatcat
     1801 aaattgagtt tttaaagata agcttgatta agaaatcaaa cttccctttg ttcattaaat
     1861 cgagagaacg ctcgcgttct aattgtccct tttctgacac taattttgca gcggaattaa
     1921 ttaggatgag tttttcaatt ttattgggga tatgacgata taactcgagg gcaacatagc
     1981 cccccatcga aaaaccaatt aaagtaaatt ttttaggggc gattgaggta aagcgatgag
     2041 ccatttccac aatagaatcg ctattgagca catcaacata atgaagtcgc ctgcttctct
     2101 gaaaaaatat ctcttgctga taccaaagct taggggttgc caatgctccg ggaatgagta
     2161 ctatatcctt catagttatg atcacattat ttacaaccgt tattaagata tcctatggtg
     2221 gcaataattc aagcaaaatc tgagtatttg agtcaaattt atacaataat tctggagctg
     2281 gcaaaatatg agaacattct ggataaaatt aaaataaccg aatcacagct tggtgaactt
     2341 cttttttgta atcagcctaa ccatttcatt ggtgttgctt tggtggaaga aaaaatttgt
     2401 ggtttagtga tgttcaatta cactcaaaat aatatttgtg tcaatgtaac gcaggggatt
     2461 tatattgaga atttatatgt ttctcctcca tatcggcgtc aagggattgg gtgtgcttta
     2521 ttcaagtatg ttgcgtgtaa agcagcagct cataactgtt caagaataga gtggtgggta
     2581 tctcgaaata atcgagaagc caggcatttt tataaaaaaa ttggtggggt cgctttatta
     2641 gactggcaaa tttttaaatg tgaccaaatt ggtattaata acttgatgag cataggagtt
     2701 gctaatgaac atatcctctt cgagtaaagc attattcgct ggagtttctg gcacggcatt
     2761 acaatggtat gactttgcac tttttggata tttcgctcca attattgcag caacttattt
     2821 tcctaatgac aatcaatttg cttcgctttt aagtgctttt ggagtatttg ctgttggtta
     2881 tttattagcg ccaataggtt cacttttttt tggctatatt ggtgatcagt tcggcaggaa
     2941 gcgtgcttta actcttagta ttttagcaat ggcgatccct acagctatga tcagtattgt
     3001 tccttcttac caatatattg gaattacagc gcctcttctt attactttgt tgaggataat
     3061 tcaaggtttt gtcgcaagta gcgaatttac tggatccgct atttttcttg ttgagcatgc
     3121 taagactgag aaaaaagcat tgtatggttg tttaaccagt tcggcttaca gcactggttt
     3181 gatactagca ggcttagctg cttcattctt tacggcctca tttatgccag actggggatg
     3241 gcgaatcggt tttggattgg ctttgattgc tggcattttg attttttatt tacgaaccca
     3301 tgttgctgaa acacctgaat atgaaaatat tgttcaacat gataaacgac gcctgccatt
     3361 tctagctgcg ctaaaagaag cgcctttggc agtagttggt attataggga tagcatggtt
     3421 agtcagtata atgacttttg gaacctatgt atttacagcc acatacctgc atagctattt
     3481 tcatatttca cttggtttag ctacattaat tatcaccata gctttagcag ttgatgccac
     3541 acttgaacca tttattgctt tgttagcagg cagaataggg ttattaaaag taattcgatt
     3601 gggtatggtt gctatgttac ttttaagtat tcccattttt ttcctacttg ccactgggaa
     3661 tgttgttttg attgcactag gattagtttt catgtctatt ttgattgcca ttacttatgc
     3721 gccactcaac gcatatatgg tttctctatt tcctcatcaa tatcgttata gtgggtttgg
     3781 ggtcgctttt aatgtaggta tttcattgtt tggtggtaca acacctgtag tgatgatgtg
     3841 gttggtgaat acaacaagta attttatttc gccagcctgg tattatatgt ttggggcaat
     3901 cgtaggatta ggttccataa tgatttgtga acaaggtcga agaaaattga tgcgtttgga
     3961 atctgcttta gcttattaaa aatgaggtgt ttgtgatgtt gtttagttcc gctttatcaa
     4021 aacatagact tacttttaca cgattaagtg attgtatgga gtatattccc ctcgcagcca
     4081 aatgggctga agatgaatgg ggatatatac gaaacaaagg agttgaatat cgcgagggcg
     4141 tgatgcatac gctgaggcgt gatctctaca ttggtactta tgcaggacag cctgtagcga
     4201 tgtttgctct attagagcat gaatttccta actcgcgtgg attaagtgca cgtgaactaa
     4261 tgtatgttta tgtagataaa aattatcgag gactaggatt tggtaaacag attattgaag
     4321 aagcaaaacg attagccaca gcggtaggtt cggatttgat tttgctagat acgctaaagc
     4381 ctagtttaaa tcgattatat gaaaaacatg gtgcgaaagt ggtttgtgag ggtagtttgt
     4441 tctctcatcc aaccgacgtg ttaagtatat caatttaata atttttagga atttataagt
     4501 ggccaaagaa ttaaaaggaa ataatcagtc agattttgct aaagtgcatc aaatgattac
     4561 tgaggctaaa tccagggttt ggcaacaagt caataagact cttattcagt tgtattggtc
     4621 tatcggacag tatgtatcta ataagataac acatgatggt tggggcaagg gtattgtaga
     4681 agagctagcg gactatatat caatagagct accaacaatt aaggggtttt cagcgcgtaa
     4741 tatatggaga atgaagcaat tttatgagac ttatcatgag aatacagaac tgtcggcagt
     4801 gctgacagaa attacgtgga caaatcattt gcacattttg tctaaaacaa agtctatgga
     4861 agaaaaagag ttttatctgc gtttagctgc caaacatcat tactctgagc gcgatttctc
     4921 aaggttaata aacgtcggaa catttgaaag aacagtgctt gccgatcaaa aactgtcagc
     4981 agtgctgaca gaattacctg atagcaaggg gaggtttaaa gacagttatg tttttgagtt
     5041 tttaaattta cctgatgatc acaaagaaaa agatttaaga cgagccttgg tcgcaaacct
     5101 aaaaaaattt ctacttgaac ttggtccaga ttttagtttg atgggagagg aatacccttt
     5161 gcaagtagga atgaaagatt ttcgtgtgga tttattgctt tttcatcgcg cgcttaactg
     5221 tatgattgca atagaattaa agtgcatcga atttagtcct tcgcatttag gacaattaca
     5281 attttattta gaagtattgg ataaaaacat aaaaaaagca catgaaaatc caacgattgg
     5341 tatattaatt tgcaaaacga aggatgagga ggttgttcaa tatgcgatga atagacatgc
     5401 ttctccaacg ttaattgcag agtatgaaac caaattaatt agtaaagctg tattgcaaaa
     5461 taagttacac gagtttgcat tacagtggga caatgatgaa tagcaggtgt tctaaataaa
     5521 ttatttttca aaaaattaaa gaaaaacaat tgaaccaaaa aacacgatat gtttaaataa
     5581 aacaacaaat cgtgtttttt ggtttttaat atgtctacta tcgctttact acctcgactt
     5641 attcgtttga aagatgtccc caagtatatt ggcatggaca gaaatcgatt taatactttc
     5701 gtaagaccta atcttataga aattcctata ggcaaacaag gcgtagcgtt tgatcgactt
     5761 gacctggatg cttgggtaga tcaatataag cagtgtagtg ggcgtccagg cggcaaagag
     5821 caaaggagta caaagccatg ggacgtaaac aaacaacagg actatttaaa agaggccaag
     5881 tttggcatat cgaaaagcaa gtccttggac atcgcattcg agaaagcact ggcacaaagt
     5941 cgctccagga agcggagcaa tacttagcca ggcggatcga agagattaga caggcaacga
     6001 tttatggagt aaggccaaaa cgcagtttta aagaagctgc ggtgcgattt ttaaatgaaa
     6061 atcaacataa ggccagcatt gataccgatg caatactcct aaagtctatt tgcccgttta
     6121 ttggtgattt gaccttggag caagtacata taggaacgtt gcaatcattt ataaaagcaa
     6181 aacaggaagc gaaacttaaa acgaaatcaa ttaataatac actagagtta gttcggcata
     6241 ttttaaacgt tgcagcaact gagtggattg atgagaatag tttaacgtgg cttctggttg
     6301 ctcctaagat taaattattg ccagttaaag atgcacgagc accatttcct ttatcttggt
     6361 cagagcaatc aaggttctta gaagcgttgc cagttcattt aaatcaaatg gcacgtttta
     6421 aagttaatac aggatgccga gagcaagaag tatgtcaatt acgttgggaa tgggaaaaac
     6481 gtgttccaag tttaaatacg agcgttttca ttatccctag ccatattaat agggatggtg
     6541 aattaagaca actggtaaaa aatggggaag atcgactggt tatccttaat gatgaagcta
     6601 aagcagtcat tgaggaggtt agaggtattc attctgagtt tgtgttttct tacaatggaa
     6661 agccaattac acgcatgaac aacactgctt ggcgaaatgc gcgtaaaaaa gcaaatctca
     6721 gtgatctgag agttcatgat ttaaaacata cttttggaag aagacttcga gcagccggtg
     6781 taagttatga ggatagacag gatctgttgg ggcatcgttc tggcaggatt actactcatt
     6841 attctcaggc tgagttgagc aatttattgg aggctgcaaa tttaattatt caaagccgac
     6901 gagaaagtaa agagcttact attttgagag taaaacaagg cggatcccac actatcccca
     6961 caaaatcccc acagtgtgaa attagggcag taggttaatt taaaaatgat gagctaacta
     7021 tttgatttta aaaggattaa atggcgcgct cggagggact cgaacccccg acaccttggt
     7081 tcgaagcctg atactcaata atagaaaaca ttataaatca acaacttacg atgcatcaaa
     7141 tcatcgaatt actgcctaga actgccacaa atacactaca aacggtcact gttacggcac
     7201 gatttcgtca ctgttgtgtc aggcagcgct aggcagtccc aatcaatatt tccctgtgcg
     7261 acatacagcc acattagagt cctattgttg attattagta ttttgattag actgactctg
     7321 aatggtataa tctcttatta cctgagttaa taaaaataca aaacgcgtat ttgaatttga
     7381 gagtggttgc gctataatat aattaaccat gcccgtcacg cctctcaatg atgcgcacca
     7441 cgacgggtta tttttttatg gctgaaaaga gttatacgaa acctgcactt actgttagtc
     7501 aacagctgga gtttttattt tctcagggtt tgcagattga ggatcaaaaa ctagctattc
     7561 gtgcattgga aacagtaagt tattatcgct tatcatccta tcttttgcct tttaagcaat
     7621 cccacaatgc aaagaaccct cgccagttta aagaaaacgc tacatttgaa caagtttggc
     7681 agctttatca atttgacaga gagctaaggt tacttgttgc tgatgcaatt gaaaaaatag
     7741 aggtggcatt tcgagcggca ttaaccaatg tgacaagtat ccgatttaat cctttttggt
     7801 atgtagaacg aaattatttt aaggctaaag ctggtgcaaa tagagaaaga gatttttttg
     7861 atgattatct aaaaacaatt aaaacgatta gtaccaataa gcaggaacta tttattcaac
     7921 attatcataa gaattatgat aaaccatatt ttccaccaat ttggatgatg gttgaggcac
     7981 tctcctttgg tgtctgttct aagatgttta ataatatcca gtcgaaagat gtgcgtaatg
     8041 agattgcttc ttttttaggt cagcatacaa ctgtaattga atcttggata aaaagtttaa
     8101 cctatacaag gaacctctgt gctcatcatt caagattatg gaatagatgg cttgttattc
     8161 ctccgctaat acctaagaat gcgcctatta aaacccatat tgatggtaac tatcgttttc
     8221 aattaatcgc ttttatcata gatcaattat tagaaacaat tgcacctgaa tctaattgga
     8281 aaataaagct ctttgagcta tttgaaagaa atgagcagtt ttcaggaatt gaaatgggat
     8341 ttataaataa ttggcgggat gatccaatat ggcattgttg aataaatcaa aattaggcaa
     8401 catttcacct aaccgaattg gttttacttc actttcacag agactggcat acccagtgaa
     8461 gtgattcgtt taaagcacgc gtagcaatcc cacattctgt tttttgctga ggtaattccc
     8521 ttgctttcat ggctgtcccc atgacttttt tgtaacgcaa aatagctaac tctatatggc
     8581 tgcgcaaacc ataattgttt ttcttttgcc ataccatatc cccctcgtcc tgcaaaaggc
     8641 gaatatgatc gtcgcgctga gtgttcgctt tccagctaat cactgcaact gatggaggag
     8701 gaatgacgat ctttgcatca ggctgtttcg tcagtatagc cttattaaaa gcaaagctta
     8761 ttaaaagcaa agcttgcttc tttaattgct tttccaggag aattatgaaa ttcagcatta
     8821 tctacaataa agctctcgtc tgttccttga aatcgacccg cttgaatcca tgcatctgga
     8881 aatattttgg ctctgtcctt accaaataat attaaccctg aactgtaggt acttttttgc
     8941 cttgataatc cattaagata acgaccgttt ctagatcttt cttatcgatc ttcctaattt
     9001 tttcgaattg ctctaaagca gctctgaagt ctatcgcttc ggagttcaat gcagttaagg
     9061 gttgctcatc aaaagtttga ttgctgacta tgcgatttaa ctctttaatc atttctgtgt
     9121 cagcttttct atttgtggtt ccagcacgaa tatatactcc ttcttctggt cctgattttt
     9181 ttataataat gatgtctagt ctagcttgga aagacacgaa caattaaaag ataaatatcc
     9241 cgccatagaa tagtatctat ttcgggaaaa atgtgtgggg caattgatcg ctaataagaa
     9301 tggcaacttt ttctctgatg ttttttgttc taaaataaaa acgtagatac caaaaagctt
     9361 gtccattgag tcaattggta tttcgagatc tctggatctt ccagttcaac cgctgtaaat
     9421 cgacgttcta taaagtcaag aataaaaact tgaggattga atcttagggt ggtttgtatt
     9481 tggggcaaaa tataatttgg attttctatt aaggaggtgg tttttaagcc accccttaga
     9541 ataatttatg atgcagtacg tcctttatgg gtatcaacga cagggaagtc gatgtccgtc
     9601 ttgaatgctt cgttgaagta gttagtgaaa gtgttcatcg ctacatgcgc taaaatttca
     9661 accatttctt catcactaaa tccagcttca cggacagtct tgatgtcgaa ctcactcacc
     9721 ccaccacgac gttcaatcag ttgagtagca aaattgagag ccacttgtgt tttcttatca
     9781 gacgattttc ctgagaggtt ttctttaagt tcatctttat taatccctgc tttttctcca
     9841 agataggtat gagcggatgc gcagtagtta cagccattat aacctgctga gaccaatgcg
     9901 atttgttcgc gtagtttagg gttaagagca cctttgctaa gagaggtcat aatcccaatg
     9961 taggcttcca gtgccgctgg tgagttggca agtgtgctga atagatttaa ttcagtgccc
    10021 atagcttttt ttgtgccttc gagtagctct ttagctttgc cttgtgcgtt agcgatagag
    10081 atttttttaa tacgttgcat gatacctctc cttatttttg gatagattgg aatacgacag
    10141 tatcctcttg ccctttatat ttgtagcaga ccatataact tacgtcaagg aaattgacag
    10201 ttgttcggaa ttctgttgtt cggaattctg actatactta agaatagagc attaatcagt
    10261 gagaaaccac catgaagagt attatcaaag gtttgttatt ttttttcatg agtgttgcct
    10321 ctttgacagc ctatgcagaa caagcctata aacgaccttc agatgctgtc atcaaacaaa
    10381 aattatcaac aattcaatat aatgttactc aacaacaggg tacagaatcc ccgtttaata
    10441 atgcttattg gaataatgaa gagcaaggta tttatgttga tgttgttacc ggtgaaccat
    10501 tatttatttc gctcgataaa tatgactcta agactggctg gccgagtttt accaaaccgc
    10561 tagaacctgg aaacataata tataaagatg atagcagcat gtttactagt cggactgaag
    10621 tgatttccaa acatggaaaa tcacatttgg ggcatgtttt tggtgacggc cctccgccca
    10681 ccaataaacg tttttgcatg aattctgcgg cgctggaatt tattccagtc aaggatctgc
    10741 agaaaagagg ttatggtaag tatttgccac tattcaaaaa tgcaggaaaa taacgtgaag
    10801 taatatgcca tgtttatggc tcacaacaag atttgccttt gataaacaga gcttaggcag
    10861 ttgagtggtt ttgcctggtt tttgcaattt atcaattaat cagctacctt taagctggat
    10921 aatattatca acagggagct taaacctgac atgaagtttt atcttcatcc atcttgtcat
    10981 ttattatcaa tgcattggaa cagttttgac ctcattaaag catcaagaga tggttacaag
    11041 catcctcctc gtcctaaaaa aatggctcat tcacaatctt tagtcatttg gcgccgccaa
    11101 cttcaaataa gatattatct aatggataag ttagagcaaa atatgttaag ccaatccaaa
    11161 acaaggcttc tttcatagaa atttgtgaac aattaagcta tgaaatgaag gatgagaaag
    11221 cggcaagcta tttggtaaaa aaattgtatg tttggcttga ggaacaattg tttgtccatc
    11281 aattgaatcc ttttgtctaa aacactatta tgcctcgttt ctagtcattc attaaaatca
    11341 ttggtttttt ctatctgtat ttctttttct taatggaggt aataagtaaa ttatttgctc
    11401 taaaagtaaa aaaggaccat actcaatcgg acagcacaga gaatttattt cgtgctccta
    11461 caaggaagga tacatggaca actcctcaaa accaccaggc aagcgctcca taaaagctga
    11521 aatgatttaa ttcaactatt gatgcttttc taataatggt cgccaggctg cctaaatgtg
    11581 tgtaattaaa agtagcattg gatggtttat tataaacaag agccgcaatt tttttggcaa
    11641 caaaagcgcc gctttgttat gcggcaggtg caagtccagg gaaagatttt ccgtaccact
    11701 tcaatgtaaa aagatttaaa tatggttaac aattttataa ggatagcagc gatgaaaaaa
    11761 attaaatcat tgtatatacc gcaattaata tttattttta tgatgccagt tcttgcctgg
    11821 gcttcagata tttcctacag tttggtgggt attcaggggt atgatcctgt gtcttatttt
    11881 caacaaggtg ggcctgtacg tggtagcgga aactacacgg gatattatga aggtgtgagt
    11941 tatatttttt ctaatcaaga gaacaaaaaa acatttcttg caaatcctga aaaatatctt
    12001 cccgcttatg gaggatattg cgcgtatggc gtatccgttg ggagcaaaat agtgagtgat
    12061 cctttagctt ggagaattgt ggatggaaca ctctatctaa atttaaacag caaaacacaa
    12121 gatgtttggg caaaaaatat acctggcaac ataaagaagg caaatattaa ttggccaaaa
    12181 attaaaggca tcgaccctaa agacttataa taagttgcac tgttttaata taattctcct
    12241 tcccacttag tttgcatccg gatttgtttt gcggttcgaa ttaagaagtt tggaagggga
    12301 aatgatgtaa tgagtatgta ttcattaagt aaagattcgg gaaattgtgg tgattaatac
    12361 agactctata gcctttaaac agactaccgt cagcggtaag ccagtaatcg tggctgggaa
    12421 agccttgaca tcttttaata ttcacctaaa cttttcatta aaacgttgag cttaatatat
    12481 cgataatatc atgttcatta gctgaagaag gaatatgaaa gaaaaaaaaa ggagtaaaac
    12541 aagtaaatac ctaagtaatt tagttttaat tcttgctctc tccatgatgg ttagctcagc
    12601 tgtgatttca tatttcttta tcagacaaaa tgagctgctt atatcttctt tgaaaatgca
    12661 agcgcagaac aaacaaattc tcattaaaga tgtatggaac aatatagtaa aaaaagaaac
    12721 cagagctgat atcgcgatac ttctgtctgt tttacctgta aaagatgagg tcgaagttca
    12781 ggccattaaa aaagactatt tgagagactt ttctgagtta acaggaacat caagtacagc
    12841 ggatattgtc aaagaggtta aaaaggaaat tgagcgttat ggtgaatata ttgataattt
    12901 atatcttgat caagtgacta ttcaaaataa agcaactgca atcgaaggta gtaataaatt
    12961 gtattctgaa atagcgtttt ttctacaaat atttagcgtt gtattgatta ttttaaggaa
    13021 ggattttaca gaataataat agtctcaacg atggatctta atcccaagtt actccttaac
    13081 acgaaagttt ataaacttgt ttaaccttga cagcgaattg atcggtgcta tatttaaaag
    13141 ataacatatc ggatagtcct gaaataatat gattgttttc caataccatg ttatgtaact
    13201 gttatattaa tcaaggggca ttaaaatgat aaaaaacgga atttttacag cagttgcagc
    13261 agcgataact ttaacaacta gtgttgcatt tgctgaaggt gaaatggaga aatgtagcgt
    13321 tgttaaagat ggcaagggat taattaagga aaacaaagca gattgcaaag gttcttccca
    13381 ctcctgtgct ggacaaaata aagcaggtga ttctgaatcg tggatcttag taccaaaagg
    13441 tcaatgtgat aaaataaatg cgggtgattt tagcgctgtt gggcaagaca ttaaagataa
    13501 aatcgaagtt tcaaattaat cgattcgtat attatgactt tgaacccgct aataggtatt
    13561 ggacttcggt accctcatta cacacaagtt ctagaggagc gaccttcgat tggctggttt
    13621 gaagttcata gcgaaaattt cttctccaac ggcggaaatg agataaaagc tcttttaaat
    13681 atttccgaat attatccgat aagccttcat ggtgttgggc tatctttggg ttcatccgat
    13741 ggtatctcca aagtccattt ggatcgccta tcgaatcttg ttcatcaggt gcagcctaaa
    13801 tttgtttctg agcatctttc atggggacat gttggtggca tacacatgcc tgatttactt
    13861 ccagtgcctt atacagaaga aagttttaac acctttaagc gcagtatatc gatagcacag
    13921 gattttttaa aacgagaaat tcttattgag aacccatctt cctatataga atataagtca
    13981 tccaggctcc atgaatccta ttttttggtg gagctttgca atcaaacagg tgccaagatt
    14041 ctgctcgatg tgaataacct attcatctca tcctggaatc acggatggaa taccaaagag
    14101 tacattgatt ctattccatt taatttagta aaagaaattc atattgctgg tcattccata
    14161 aaagaattgt caaacgatag tactctgcgt atagatactc acaataatta tgtgtgtgat
    14221 gaggtgtggg ctctatacga ttatactgtt caaagatttg gccctatacc aactttactt
    14281 gaatgggatg cagacatccc ttctctcaat gttttaattg aggaagcttc aaaatgcgag
    14341 tcatacctct cgtcttacaa agtcaatagg ggggtagcaa atgcatgaat tacttaaatt
    14401 acaagagtcc ttttatcgaa atatctttaa aaaagacgtt gatttaagtt ttataagctc
    14461 ggatttctcc caagaacggc tagatgttta tcgtcagact atttttgaaa atatgatcaa
    14521 tgctttgagg attacttatc caggcgtttg gaaattaatc ggcaatgagt gtgccaatag
    14581 tgttgcctat acttattgca aaaaggataa gtacttacca aagacaggct ggcttgatga
    14641 ttttggtgga gatttccctg actttctttc cacattacag caactgtctg agttgcccta
    14701 tttaagtgat tatgcccact atgaatggct caaacatttg gcgtatgggg ctgtagactc
    14761 taagtccatt tcccctcaag atttaatgac catccccgaa gaggaaatag atcatatcaa
    14821 actgaatttt tgtccttcag tttgtatttt tcagtccaaa tacccgttgt ttgatattca
    14881 tgataccatt gagaattgta gttcaaaagc aattaccctt aagacagaag cagcttatgg
    14941 tgttattggc tgtaaggaaa acgaaataca tacctattgg attgccgaag atcagtggca
    15001 tttcataaag aaattatttg aaggtgcaaa gcttttagag agcgtccagt atgcacaaac
    15061 aatcaatcaa aattttgact taacttcagc agttgctttt gtgttacagg agcagctggt
    15121 cgacaatatc attaaaaccg gaggcaataa tgctcaataa ttcggtagaa acttctataa
    15181 ataagccgtt catttctaaa attattcaaa tttatctatc agttacaaag gttttggaga
    15241 aaattgccct tcctgtgctt gttttattca tgcgcttatg gatggctaaa atcttctggt
    15301 attctggcat gactaaaata tcaaactggc agtcgaccgt cttcttgttt agggaagaat
    15361 ataaagttcc ttttgtgcct ccagaaatta ctgcttgtct tgcaacctct tttgagctcg
    15421 cttgccctgt acttcttatc tttgggtttg caacaagact tgcaacattg cctttactgg
    15481 ctatgaccgc tgtcattcag tttacctatc tcgatttaat agaccatcgt tactgggcta
    15541 tgctgcttgc tttgatttta ttttatggcc cgggttcact atctcttgac cacttaattt
    15601 ctaagaaatt tggattattg gcatcttcgc gtggcgatgt tgcctaaatc aaatttggtg
    15661 tgcataatgc ttctgagtat aataagtcca gcgatctcaa taattctttt tctaatagat
    15721 tgcccgctca gaaaaagtaa atactttgaa cagatttatg cagggtaaaa aaataattgt
    15781 tttatcaccc gagtttaaaa agtattaaac taatgttcaa caccgc
//
LOCUS       DACVWI010000064        15700 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.064, whole genome shotgun sequence.
ACCESSION   DACVWI010000064 DACVWI010000000
VERSION     DACVWI010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 15700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15700
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.064"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            24..1256
                     /locus_tag="JBH85_07360"
     CDS             24..1256
                     /locus_tag="JBH85_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016357023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946015.1"
                     /translation="MSVSRVTAWFVWVIVSIFYAYQYVLRVMPNIMLDDITQQFHIDA
                     IIFGQFSGIYYIGYSLMHLPIGIMLDRFGPRKVMTGCIMLTVIGLLPILFAENWVYPV
                     IGRALIGIGSSAAILGTFKIIRMTFKEKHFPRMLSFSVMIGLVGAVYGGGPVSYMCQL
                     MGYKMVVEIFVGIGIVLAGITYLIVPDAQPSRQDSVISNIRMVFGNSKVILLCCFAGL
                     MLGPLEGFSDVWGSGFLKMAYSLNANAANYLPSMIYIGMCFGAPILSLIAEKTGYYLG
                     TIIASGVVMFLVFAMLVGGVLTIPSITISFILVGICCSYQILAIYKVSTYVPDNLAGL
                     TTAIANMIIMIFGYGFHSVIGYVVNMYGGTHVARAFVYGVGVIPLTLAVGVVGFLFLA
                     YQEKNFTPDASFASPELR"
     gene            1260..1625
                     /locus_tag="JBH85_07365"
     CDS             1260..1625
                     /locus_tag="JBH85_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGG1p interacting factor NIF3"
                     /protein_id="HAU0946016.1"
                     /translation="MAFLSCVVINIKGGIAIMYMLYFHVPETHLDEVKNAVFAAGAGY
                     VDNYNHCAWQTLGEGQFMPLPGSQAFIGEINQLEKVPEYKVETICARERIKEVVAALK
                     KAHPYESPSYQVVRIETEF"
     gene            1807..3369
                     /locus_tag="JBH85_07370"
     CDS             1807..3369
                     /locus_tag="JBH85_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HAU0946017.1"
                     /translation="MVYMLKILALLSCLILSSCLVGPNFKEPKKDAANYWLTSSPAIK
                     QSAFQNANWWKVFNDPTLTSLIDNGYHNNLSLQMAGVRVLQARAQLAQSVGELYPQQQ
                     AMVGDYNYNRIGGNQLQGLLPPDFLTASLGFSASWELDFWGKYRRAIQSNDALFLASL
                     AAYDSALVTLTSDIASTFIKIRTSEELIKVTKTNIQVQAMSLKIAKDRYYGGQTSLLD
                     VEQAATELAETQSKLPQYVSDLQHQKDILAVLLGTTPDKVDDLLKKNKGIPKALAVVE
                     VGIPKEVIARRPDVYQARMEAIAQSAAIGAVKANLYPSLSLVGTFVFASNNIGNSTIS
                     DIFNWSNRNIVAGPSLAWSLLNYGQITNAVRAQDAAFQQALLNYLNLVLKVQQEVQDN
                     ITRYVEGQKTVSSLKTANAAAIESTRLALVRYKEGEANYTTVLNAEQQQLRVQTSLVN
                     ATGELALSLVGLYRSLGGGWQIRGKNDIVSNQIKSEMAARTNWGSLLKQENHLPPDSN
                     GQRMKQLYLPTW"
     gene            3363..4529
                     /locus_tag="JBH85_07375"
     CDS             3363..4529
                     /locus_tag="JBH85_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0946018.1"
                     /translation="MVMRMNSQNKQNLVKTVAIVFFGIVFVYLVYDHFTRAQVATPAP
                     PDVIVQKPKLMKMGQYVTQTGNTVAFQSVDLVARIEGYLDAIKFTDGAFVKKNQELFI
                     IEPEPYLEQLRAAEAKVAAQKANYAYAKSEYARQQRMYKQNATSLNSVEKWKAKVEEA
                     QAEVDKSEADATNAAITYGYTHVSAPFDGRMGRHLVDVGNLVGHGAATDLATIEQIDP
                     IYVYFNLNELDLIRIRNAARKRGYKPMELVKIPVEVALQDEKGFPHKGTLDFVNTGLN
                     ASTGTMEFRALLPNKGYPLVPGLFVQVRVPISEPSPKLTIPDTSVQYDQIGPYVLVVD
                     KDNYVLTKRVTLGGLENGVRAITKGLDAQDSVIVSGLQNATPNHRVTPKTEQPE"
     gene            4589..7741
                     /locus_tag="JBH85_07380"
     CDS             4589..7741
                     /locus_tag="JBH85_07380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HAU0946019.1"
                     /translation="MISKFFIERPVLANVIALFIVFIGIIAIAVLPVSQYPAIVPPTI
                     QVTTTYPGADAKTLINTVALPIEQQVNGVEDMLYMQSTSTSGGTYTLIVTFAIGTDLN
                     YAQVLVQNRVQAAMAQLPESVQKQGVIVQQKSTAILQFITLTSKNNEYDGVFLDSYAT
                     INMQDELSRLPGVGNVVVFGSGSYAMRVWLDPKKMLAFSLNPSDVLNAISYQNKEVSA
                     GQLGAPPTVGKQAYQFTVNVPGQLSDPKEFENIIIKTIDTPPDQNSSASSSAQVVRIR
                     DVGRVELGSESYNQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQFPPGL
                     EYSIPFDTTVFVKASIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTIIGT
                     FFAMLLLGYSINLLTLFALVLAIGIVVDDAIVIVEGVTQHIEKGLSPKESAILAMKEL
                     FGPIIGITLVLMAVFVPAGFMPGLTGSMYAQFALVIAATAFISAINAMTLKPTQCALW
                     LKAPDTSKPKNIFFQAFDRIYNPIESAYVKFIDRLVHRSGKVCLIGIILVACAIYGLT
                     RIPTGFIPMEDQGYLMLSIQLPDGASLGRTDEVVSRLAKKASEVGGVDNVIAIDGISL
                     LDNNSLLSNAGVIYVIFKDWSVRGKSENLRALYTKFNAIAKETLDAKVLVVVPPPIQG
                     LGMSGGFQMQVELQDGTFDYRKLQQATDQMINTGRQYPQLQNLMTTFRASVPQVAAPI
                     NRTKAESLGVRVADAFDTLQTYLGSSYVNLFTKFGQVFPVYVQADASSRVSSEDLRNY
                     YVRNQSGSMVPLGTLTDVGPAVGPSIISLYNLYPSSNINGVAARGYSSGQGIQVMEKL
                     AKEQLPPGISYEWTSTAYQEKVAGNLSYFIFALSLVLVYLILSGQYENWLIPSAIILS
                     VPLTLVGTVLALGSLGMDNNMYTQIGLLLLIALATKNAILIVEVAREQREIHNKSVLE
                     AAVIGAKTRFRPILMTSFAFIMGVMPLVFATGAGANSRRSIGIAVSSGMLASTCLAVV
                     FVPVFYVLLQTWQDKRKAKH"
     gene            complement(8107..10860)
                     /gene="sidC"
                     /locus_tag="JBH85_07385"
     CDS             complement(8107..10860)
                     /gene="sidC"
                     /locus_tag="JBH85_07385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SidC"
                     /protein_id="HAU0946020.1"
                     /translation="MVINMVDVIKFKEPERCDYLYVDENNKVHILLPIVGGDEIGLDN
                     TCQTAVELITFFYGSAHSGVTKYSAEHQLSEYKRQLEEDIKAINSQKKISPHAYDDLL
                     KEKIERLQQIEKYIELIQVLKKQYDEQNDIRQLRTGGIPQLPSGVKEIIKSSENAFAV
                     RLSPYDNDKFTRFDDPLFNVKRNISKYDTPSRQAPIPIYEGLGYRLRSTLFPEDKTPT
                     PINKKSLRDKVKSTVLSHYKDEDRIDGEKKDEKLNELITNLQNELVKELVKSDPQYSK
                     LSLSKDPRGKEINYDYLVNSLMLVDNDSEIGDWIDTILDATVDSTVWVAQASSPFYDG
                     AKEISSDRDADKISIRVQYLLAEANIYCKTNKLSDANFGEFFDKEPHATEIAKRVKEG
                     FTQGADIEPIIYDYINSNHAELGLKSPLTGKQQQEITDKFTKHYNTIKESPHFDEFFV
                     ADPDKKGNIFSHQGRISCHFLDFFTRQTKGKHPLGDLASHQEALQEGTSNRLHHKNEV
                     VAQGYEKLDQFKKEVVKLLAENKPKELLDYLVATSPTGVPNYSMLSKETQNYIAYNRN
                     WPAIQKELEKATSIPESQKQDLSRLLSRDNLQHDNLSAITWSKYSSKPLLDVELNKIA
                     EGLELTAKIYNEKRGREWWFKGSRNEARKTQCEELQRVSKEINTLLQSESLTKSQVLE
                     KVLNSIETLDKIDRDISAESNWFQSTLQKEVRLFRDQLKDICQLDKYAFKSTKLDEII
                     SLEMEEQFQKIQDPAVQQIVRDLPSHCHNDEAIEFFKTLNPEEAAKVASYLSLEYREI
                     NKSTDKKTLLEQDIPRLFKEVNTQLLSKLKEEKAIDEQVHEKLSQLADKIAPEHFTRN
                     NIIKWSTNPEKLEESNLNEPIKSVQSPTTKQTSKQFREAMGEITGRNEPPTDTLYTGI
                     IKK"
     gene            complement(11011..13737)
                     /gene="sdcA"
                     /locus_tag="JBH85_07390"
     CDS             complement(11011..13737)
                     /gene="sdcA"
                     /locus_tag="JBH85_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdcA"
                     /protein_id="HAU0946021.1"
                     /translation="MMNMVDKIKFKEPERCEYLHIAKDNKVHILLPIVGGDEIGLDNT
                     CETTGELLTFFYGKTHGGTKYSAEHHLNEYKKNLEDDIKAIGVQRKISPNAYEDLLKE
                     KKERLEQIEKYIDLIKVLKEKFDEQREIDKLRTEGIPQLPSGVKEVIKSSENAFALRL
                     SPDRPDSFTRFDDPLFSLKRNRSQYEAGGYQRATDGLGARLRSELLPPDKDTPIVFNK
                     KSLKDKIVDSVLVQLDKDFNTKDGDRGQKFEDIKKLVLEEYKKIDSELQVDEDTYHQP
                     LNLDYLENIACTLDDNSTAKDWVYGIIGATTEADYWPKKESESGTEKVSVFYEKQKEI
                     KFESDTNTMSIKVQYLLAEINFYCKTNKLSDANFGEFFDKEPHATEVAKRVKEGLVQG
                     AEIEPIIYNYINSHHAELGLTSELSSKQQEEITEKFTQRYHIIENSPHFDEFFVADPD
                     KKGNIFSHQGRMSCHFLDFFARQTKGKYPLGDLAGHQEALQAGTSNRLHHKNEVVAQG
                     YEKFDQFKKEVVKLLAESKPKELLDYLVATSPTGVPNYSMLSKETQNYIAYNRNWPAI
                     QKELEKTTDIPENQKQDLLRLLSRNNLQHENLSAITWSKYSSKPLLDVELNKIAEGLD
                     LTAKIYNEKRKSEWFKGSRNEARKTQCEELQRVSQEINALLQSESLTKSQVLEKVLNS
                     IEALDKIDRDISAEYNLFKSTLQKEVQSFRDQLKDICQLDNYAFKSTKLDEIISLEME
                     EQFQMIKDPAVQQIVRDLPSHCHNNEVIEFFMTLNPEEAAKVASYLSLEYRELNKSTD
                     KKTLLEQDIPKLFKEVNMELLSQLKQDSAVKEDVYEKFCQLADKIPPEHFTRNNIRKW
                     SANPEKLEESNLGELLKSSEGSITEMARKYRETINEMTGRNESLRETVRNTI"
     gene            13988..15181
                     /gene="sdeD"
                     /locus_tag="JBH85_07395"
     CDS             13988..15181
                     /gene="sdeD"
                     /locus_tag="JBH85_07395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdeD/laiF"
                     /protein_id="HAU0946022.1"
                     /translation="MLYNKSSFCLWKETIVPIILDSDVLEVAEYVYKTRLSQPYTEVG
                     SEWEYNYKNPTATFAKGDGHNLQRYITIDGKQLHRPIHGLAHTMRTLMYSQLMYCSSK
                     KQPSPHVCQDGRTIADLSELDLKKINIAQLFFVAGRESEASYGDAYHRYHLYGAKQFE
                     EYARKHLTHLFSEEEIRLYSRCIEDRVGDSFDGTPEGYIIHLSHMIDLMRCKSPVEVF
                     LGHSKGVSGIVPTLIHLFGKQDGLDIMHYARGLFAATGEAVPYIDSSEWPHLGVDLSR
                     VQRALSIVGDINVPGQEADSKKTAQAGFSVDGCYSALTSVPTPSWYEKELKEIDDEKI
                     DVKEVDDREIEKEHEIVVPSQATTPLSTVKTDSFVEKLLKPFMIWKKPEVQTTQPTTE
                     KTNKP"
     gene            15252..>15700
                     /locus_tag="JBH85_07400"
     CDS             15252..>15700
                     /locus_tag="JBH85_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SidJ"
                     /protein_id="HAU0946023.1"
                     /translation="MFSYLDKLLDGIFGYQKSDTSQLSTSTPPTLTTVPLKQEYFVKI
                     GESETQDLGLLPVVSKRHNQSVPLEEIPFEDTRLELIELYIALLKQCVLDEKLKSIPA
                     QYLISHYLFIKTLAANEGNKGRKDLYLNLSQKVADYLEKNESKIWSMA"
BASE COUNT         4420 a         2860 c         3176 g         5244 t
ORIGIN      
        1 tattttcttt tccgagggtg attatgtctg tttcacgagt tacagcgtgg tttgtgtggg
       61 tcatagtatc catattttac gcatatcaat atgttctgag agttatgccc aatattatgc
      121 tggatgatat tactcagcaa tttcacattg atgccataat ttttgggcaa ttttccggta
      181 tttattacat tggttattct ttgatgcact tgcctattgg gattatgctc gatcgttttg
      241 gcccaagaaa agtgatgaca ggatgcatca tgttgaccgt gataggttta cttcccattt
      301 tgtttgctga aaattgggtt tatccagtga taggaagagc cctgattggt ataggttcat
      361 cggctgccat tttaggaaca tttaaaataa tccgcatgac ttttaaggag aaacattttc
      421 caaggatgct gagcttttca gtcatgatag gacttgttgg cgcggtatat ggcggcggtc
      481 ctgtcagtta catgtgtcaa cttatgggtt ataaaatggt ggtggaaata tttgtaggca
      541 taggaatagt gctggctggt attacctatc taattgttcc cgatgcacag ccttctcgcc
      601 aggatagtgt gatttctaat atcagaatgg tttttggtaa tagtaaagtg atcctattgt
      661 gttgttttgc gggattgatg ttgggaccac tggaaggttt ttctgatgta tggggctctg
      721 gctttttaaa aatggcatac agtttgaatg ccaacgcggc aaattatctt ccatcaatga
      781 tttatattgg catgtgtttt ggcgcaccta tcttaagtct gattgcagaa aaaacagggt
      841 attatcttgg aactatcatc gcatcaggcg tggttatgtt tctggtattt gctatgcttg
      901 tcggaggtgt tctgactatt cccagtataa caataagttt tatcctggtt ggcatttgtt
      961 gctcttatca aattttggct atttataaag tatccactta tgtccccgat aatcttgcag
     1021 ggttaactac tgcaattgcg aatatgatta ttatgatttt tgggtatggt tttcattctg
     1081 taattggtta tgtcgtcaat atgtatgggg ggacacatgt agctcgcgct tttgtttatg
     1141 gagttggggt gattcctttg acattggctg ttggcgtggt gggttttttg tttctggcct
     1201 atcaagagaa aaattttacc ccggatgctt cctttgcctc tcctgaatta cgataattac
     1261 tggcatttct atcttgtgtg gtaataaata tcaagggagg tatagctatc atgtatatgt
     1321 tgtattttca tgttccagaa actcatcttg acgaagtaaa aaatgcagtt tttgcggcag
     1381 gggctggtta tgttgataat tataaccatt gcgcctggca aactttaggt gaaggccagt
     1441 ttatgccttt accaggtagc caggcgttta ttggagaaat taatcaattg gaaaaagtgc
     1501 ctgaatacaa ggtggaaacg atttgcgcca gagagagaat caaagaggtg gttgcagctt
     1561 taaaaaaagc tcatccctat gaaagccctt cttatcaagt ggtacgtatt gagacagagt
     1621 tctaaatatt agagcgagaa attcaggcag gtcgaatcac cagatggttg gtcatttagt
     1681 aagaatttgt ttcttcagga tacttgttca attgagtatt catagataat atctaatgat
     1741 tgatgaacca atagttcaaa tccatcttca atctacataa gctgcttttg aacagatagg
     1801 gaaatactgg tatacatgtt gaaaatcctt gctctcttaa gttgtttgat tctaagctcc
     1861 tgtctggtcg ggccaaattt taaagagcct aaaaaagatg cggccaatta ttggcttact
     1921 tcaagccctg caataaaaca atccgctttt caaaatgcga attggtggaa agtctttaat
     1981 gatcccactt taacctcatt aatcgataac ggttatcaca acaatctttc cttgcaaatg
     2041 gcaggagtac gagttttgca agcaagagct caacttgctc aatcagttgg ggagctttat
     2101 ccccagcaac aagctatggt aggagattat aattacaatc gaattggggg caatcaatta
     2161 caagggcttc taccgcccga ttttttaaca gccagcctcg gattttccgc aagctgggaa
     2221 cttgattttt ggggaaaata ccgaagagcg attcaatcta atgatgccct gttccttgcc
     2281 tctctggcag cttatgattc cgcattggtt actctcacct cagatattgc cagtactttt
     2341 attaaaatcc gcaccagcga agaattaatc aaagtaacaa aaactaatat ccaggtgcag
     2401 gcgatgagtc ttaaaatcgc aaaggatcgt tattatggtg gtcaaaccag tttactggat
     2461 gtggaacaag cggcaacaga acttgcggaa actcaatcaa aactgcccca atacgtgagt
     2521 gacctccagc accaaaaaga tattttggct gtattacttg gtaccactcc tgataaggtg
     2581 gatgacttgc ttaaaaaaaa taaaggaata ccaaaagctt tagcggtagt ggaagttgga
     2641 attcctaaag aagtgatagc gcgaaggcca gatgtttatc aagccagaat ggaggctata
     2701 gcccaatcag ctgcaattgg cgctgtgaag gctaatcttt atccttcact ttcattagtg
     2761 gggacttttg tttttgcctc aaataatatt ggcaattcta ctattagtga tatatttaac
     2821 tggtctaatc gcaatatagt cgcaggcccg tcactggcat ggtctttatt aaattatggt
     2881 caaatcacga acgcggtacg agctcaagac gctgctttcc agcaagcatt gctgaactat
     2941 cttaatttgg tgctcaaagt gcagcaggaa gttcaagata acattacgcg ctatgtagag
     3001 gggcaaaaaa ccgtctcttc acttaaaaca gccaatgctg ctgccataga atcgacaaga
     3061 cttgctttag tacgatacaa ggaaggagag gctaattaca ccactgtatt gaatgcagaa
     3121 cagcaacaat tacgagtaca aacttcactg gttaatgcca caggagaatt ggctttgtct
     3181 ctggttggct tataccgctc gcttggaggc ggttggcaaa tacgcggcaa gaatgatatt
     3241 gtttcaaatc aaataaaaag tgaaatggct gcccgtacta attggggtag tttattgaag
     3301 caagaaaatc atttgcctcc agactctaac ggacaacgaa tgaaacaact atatttacca
     3361 acctggtgat gagaatgaac tctcaaaata aacaaaattt agttaaaacc gtagcaattg
     3421 tattttttgg tattgtgttt gtttatttag tatatgacca ttttacaagg gcccaggtag
     3481 caaccccagc accgccagat gtgatcgttc aaaagcccaa attaatgaaa atgggacagt
     3541 atgttaccca gacaggtaat acagtagcat ttcaatcggt agatttggtg gcacggattg
     3601 aaggttattt ggatgccata aaatttactg acggcgcttt tgtcaaaaaa aatcaggaat
     3661 tatttattat tgaacccgag ccctatcttg agcaactgcg tgctgctgaa gccaaggtag
     3721 ccgctcaaaa agcaaattat gcctatgcca aatcagagta tgccagacag caacgcatgt
     3781 ataaacaaaa tgccacgtct cttaacagtg ttgaaaaatg gaaagcaaaa gttgaagaag
     3841 cacaggcaga agtagataaa tcggaagctg atgctacaaa cgccgcaatt acatatggtt
     3901 atacccacgt ttcagctcct ttcgatgggc ggatgggaag acatttagtc gatgtgggta
     3961 atttggttgg gcacggtgcc gcaacggatt tggctaccat agaacaaatc gaccctattt
     4021 acgtttattt taatttaaat gaactggatt taatcaggat tagaaatgca gcgcgcaaga
     4081 gaggatataa accaatggaa ttggtcaaaa tccctgttga agtggctttg caagatgaaa
     4141 aaggatttcc tcataagggg acattggatt ttgtaaatac tggtttaaac gcttcaactg
     4201 gaaccatgga gtttcgcgcc ttgttaccta acaagggata tcccctggta cctggtttat
     4261 ttgtgcaagt ccgggtaccg atatctgaac cttctccaaa attaacaata cctgacacct
     4321 ctgttcaata cgatcaaatt ggcccctatg tccttgtggt tgataaagac aattatgtgc
     4381 ttaccaaacg cgtgacactt ggcgggctag aaaatggggt aagggctatt actaaaggcc
     4441 ttgatgctca agacagtgtg attgtttccg ggttgcaaaa tgcgacgccc aatcatcggg
     4501 ttacgcctaa aactgagcaa cctgagtaag tatggccaaa aaattgtaag aatttaagac
     4561 cctttattca gggagcgaaa caactgaaat gatttccaaa ttttttattg aaagacccgt
     4621 tctggccaat gtcattgcct tgtttattgt atttataggg ataatagcga ttgctgtttt
     4681 gcctgtgtct caataccctg ccattgttcc tcctactatc caggttacta cgacctatcc
     4741 tggcgctgat gcaaaaactt tgattaatac cgtcgctttg ccaattgagc aacaagtcaa
     4801 tggggttgag gacatgctgt acatgcaatc gacaagtact agtggaggca cctatacttt
     4861 aattgtcacg tttgctatag gcacggatct gaactatgcg caggttctgg tgcaaaatcg
     4921 agtacaagcg gcgatggctc aactccccga atcagtacaa aagcaaggtg ttatcgttca
     4981 acaaaaatcg actgctattc ttcaatttat tactttgact tcaaaaaata atgaatacga
     5041 cggcgtattt cttgacagct atgcgaccat caatatgcaa gatgaattat cccgtttacc
     5101 cggagtaggg aatgtggtgg tttttggttc aggaagttat gcgatgcgtg tttggctcga
     5161 tcctaaaaag atgcttgctt tttctttgaa cccaagtgat gttttaaatg ccatcagcta
     5221 ccaaaacaaa gaggtatcag ctggacaact gggtgctcct cctactgttg gcaaacaagc
     5281 ctatcaattt acagtgaatg tgcctggaca actctctgat cccaaagagt ttgaaaacat
     5341 tattattaaa acgattgata ccccacccga tcaaaattcc tctgccagta gctctgctca
     5401 ggtagtacgt attcgtgatg tagggcgagt tgagttggga tccgagagct ataatcagct
     5461 cgctaatctt aatggtaaac ctacagcagc aataggtatc tttcaacttc ctggtgccaa
     5521 tgcgttggat gttgcgcaag aagttcggaa agccgtggcg aaaatggcaa aacagtttcc
     5581 tccgggtctt gaatattcta ttccatttga taccaccgtt ttcgtcaaag cttcaattga
     5641 agaagtatat aaaacacttt ttgaagcagg aattttggtt ttaatagtga ttgttgtatt
     5701 tttacaaaat tttcgcgctt cattagtacc cgcgacaacg gttcctgtga ctatcattgg
     5761 gacatttttt gccatgcttt tattgggcta tagcattaat ttgctgactt tatttgcttt
     5821 ggtattagca attggaattg tggttgatga tgccattgtt attgttgagg gtgtgactca
     5881 acatattgaa aaaggcttgt cacctaaaga atcagccata cttgcaatga aagaattatt
     5941 tggcccgatt attggtatca ctttggtatt aatggctgtt tttgtaccgg ccggttttat
     6001 gcctgggtta acggggtcaa tgtatgcaca gtttgcttta gttattgctg caactgcctt
     6061 tataagcgca attaatgcca tgacgttaaa gccgactcaa tgtgctttat ggttaaaggc
     6121 tcccgatacg agtaaaccaa agaatatatt ctttcaggcc tttgatcgaa tttataatcc
     6181 cattgaatcg gcttacgtaa agtttattga tcggcttgta catcgtagtg gtaaagtttg
     6241 tttgattgga atcattttag tggcttgtgc catttatggc ctgacgcgta ttccaactgg
     6301 ctttattccc atggaagatc aaggctattt gatgttaagt attcagctgc cggatggcgc
     6361 cagtttagga cgtactgatg aagtagtgag tagattagct aaaaaagcat ctgaagttgg
     6421 gggtgtagat aatgtgattg ctattgatgg tatttcatta ttggataaca attctctgct
     6481 ttctaatgcc ggtgtcatct atgttatatt caaagattgg agtgtcagag gaaaatctga
     6541 aaatttacga gctctttata ccaaattcaa tgcaatagcc aaagaaaccc ttgatgcaaa
     6601 agtgttggtg gttgtgcccc ctcccattca aggtttaggg atgtcggggg gatttcaaat
     6661 gcaagttgaa ttacaagacg gtacttttga ttacaggaaa ttacagcaag ctactgatca
     6721 aatgatcaat acagggcgtc aatacccaca gttgcaaaac cttatgacga catttcgtgc
     6781 gagtgttcct caagttgcag cacctattaa cagaaccaaa gccgaatctt taggagtgcg
     6841 cgttgctgat gcctttgata ctttacaaac ttatttaggt tcttcttatg tcaatctgtt
     6901 cacgaaattt ggtcaagtat ttccagtcta tgttcaggcg gatgcatcct cgagggttag
     6961 cagcgaagat ttaaggaatt actatgtaag aaatcaatcc ggctccatgg tgcccttagg
     7021 tactcttaca gacgtggggc ctgcggtagg accctcaatt atttctttat ataaccttta
     7081 tccatcaagt aacataaatg gggttgccgc aagaggctat agctcggggc agggaatcca
     7141 ggttatggag aaattggcaa aggaacaatt acccccaggg atatcttatg aatggacaag
     7201 tacagcttac caggaaaagg tggctggtaa cctcagttac tttatttttg ccttgtcttt
     7261 ggttttggtt tatttaattt tatctggcca gtatgaaaat tggcttattc catctgcgat
     7321 tatcctgagt gttcctttga ctttggttgg aacagtatta gctctcggca gtttgggtat
     7381 ggataataat atgtacactc aaattggctt gttacttctt attgcattgg ctacaaaaaa
     7441 tgctattttg attgttgagg tagcgcgtga acaacgtgaa attcataata aatcagttct
     7501 tgaggcagcg gtcattggcg ccaaaacacg ttttcgtcct attctgatga catcttttgc
     7561 atttatcatg ggggttatgc ccttggtttt tgcaacggga gcaggtgcca attctcgtcg
     7621 ctcaattggt atagcggtga gcagtggtat gcttgcctca acttgccttg cagttgtttt
     7681 tgtgcctgtt ttttatgtat tgttgcaaac ctggcaggac aagaggaagg caaaacatta
     7741 attaatttaa cgtaagttat ggataaagat tacataagaa ccagttgata tccagaggac
     7801 gtttgggctg aggagatgcg taagcattgt cttgaagcct tggcatgaaa cattaaatca
     7861 aatacgagat ttcgagacgg cataaatacc tccgcaacct gagtggttcg agataataac
     7921 tgattttatc catgactcat gctaatttac agctatagag aatgctgtga gaataattct
     7981 aatcctctca cagccaaata gtgtatttat cttcctgaac attcaaacag ttgatgctat
     8041 caagttatat tgtatgccca agggtgtctg taggaggctc atttcttcca gtgatttcac
     8101 tcttacctat ttctttataa ttcccgtgta caaagtgtct gtaggaggct catttcttcc
     8161 agtgatttca cccatcgctt ccctgaattg ttttgatgtt tgtttagtag tagggctttg
     8221 gactgatttg attggctcat taagatttga ttcctcaagc ttttcagggt tggtagacca
     8281 ttttataatg ttatttcttg taaaatgctc aggggcaatt ttgtcagcca gttgactgag
     8341 tttttcatga acttgctcat caatagcttt ttcttctttg agtttggaga gtaactgcgt
     8401 attgacttct ttaaacagtc tgggaatatc ttgttctagg agagttttct tatcggttga
     8461 tttattaatt tccctgtatt ccaggcttaa atagctagct acttttgctg cctcttcagg
     8521 gttcaatgtc ttaaagaatt caattgcttc atcattgtgg caatgagaag gcaagtccct
     8581 gacaatttgt tgaacagcag gatcttgtat cttttgaaat tgttcttcca tttccagaga
     8641 gatgatttca tcaagttttg ttgatttaaa ggcatacttg tccaattggc aaatatcttt
     8701 caattgatct cgaaataacc tgacttcctt ttgcagagta ctttgaaacc aattggattc
     8761 ggcagaaatg tctctgtcaa ttttatctaa tgtttctata gaatttaaaa ccttttcaag
     8821 tacctggctt ttcgttaaag attcactttg cagaagagta ttgatttctt tggatactct
     8881 ttgcaattct tcacattggg tcttacgagc ttcatttctt gaacctttaa accaccattc
     8941 gcgtcctctc ttttcattgt aaatttttgc agtgagttct aatccttcag cgattttatt
     9001 taattccaca tccaataatg gcttggagga atattttgac caggtaattg cgcttagatt
     9061 atcgtgttgt aaattatcac gagaaagcaa tcttgaaaga tcttgttttt gactctccgg
     9121 gatgctggta gccttttcca gctctttttg aatggctggc cagttacgat tataagcaat
     9181 gtaattttga gtttccttcg aaagcatgga gtaatttgga acacctgtag gtgaggtagc
     9241 aaccaaataa tccaataatt cttttggttt attctcagcc agcagtttga caacctcttt
     9301 cttgaattga tccagttttt cgtacccctg ggctactacc tcattcttgt gatgtaagcg
     9361 attggaggtt ccttcctgga gagcttcctg atgacttgca agatcaccaa gaggatgttt
     9421 gcctttggtt tgtcgagtaa agaaatccag aaaatgacaa ctgattctgc cttgatgaga
     9481 aaagatattg ccttttttat ccggatcagc gacaaaaaac tcatcaaaat gtggagattc
     9541 tttaatcgta ttataatgtt ttgtaaattt atcagtgatt tcttgttgtt gtttgccggt
     9601 taacggagat tttaatccca gctcggcatg gttgctgtta atatagtcgt atataattgg
     9661 ttctatatct gcaccttgcg taaatccttc ctttactctt ttcgcaattt cagtagcatg
     9721 aggctctttg tcgaaaaatt ctccaaagtt agcatccgat aatttgtttg ttttacagta
     9781 aatattggct tcggccaaca ggtactgaac tctgatggat atcttgtccg catcgcggtc
     9841 tgatgatatt tctttagcac catcatagaa agggctggat gcctgagcta cccagacagt
     9901 ggaatctact gtagcgtcga gaatagtatc aatccaatca ccaatttcag agtcgttatc
     9961 tacaagcatc aaactattta ctaaataatc gtaatttatt tcttttcctc ttggatcttt
    10021 agataaagat agtttcgaat attgaggatc actttttact aactctttta caagttcgtt
    10081 ttgaagatta gtaattagtt cgtttaattt ttcatctttt ttttctccat caattctatc
    10141 ttcatcttta taatgactaa gaacagtgct tttaacttta tccctaagtg attttttatt
    10201 aattggagtt ggtgttttat cttccgggaa cagtgttgaa cgcaggcgat aacctaatcc
    10261 ctcgtatatt ggaataggag cttgtcttga gggcgtgtca tattttgaga tgtttctttt
    10321 gacattgaat aaagggtcat caaagcgagt gaatttatcg ttgtcatatg gagaaagtct
    10381 cacagcgaaa gcattttcag aggatttaat gatttccttt accccagagg gtaattgcgg
    10441 aatccctcca gtacgaagtt gcctgatatc attttgttca tcatattgtt tttttagtac
    10501 ttgaattaat tcaatgtatt tttcaatttg ctgtaagcgt tctattttct cttttaataa
    10561 atcgtcataa gcatgaggtg aaattttctt ttgactattg atggctttga tgtcttcttc
    10621 caattgcctt ttgtattcac tgagttggtg ttcagcagaa tatttagtca caccactgtg
    10681 cgcactacca tagaaaaatg tgatcaactc aactgctgtt tgacaggtat tatccaggcc
    10741 tatttcatct cctcctacaa tcggtaaaag gatatgaact ttgttgtttt catcaacata
    10801 tagataatca caacgttccg gctctttgaa tttgattacg tcaaccatgt ttatcaccat
    10861 tttctagtgt cttgtttata agtatattat aaagacaatt tgtttgtaaa acaacaaaaa
    10921 gagttgtaat taaacttttt gcttgattac acatacgcct caacacaacc gtgtttttat
    10981 attctcaatc gcttgattca tactactaag ctatattgta ttcctaacag tttctctgag
    11041 tgactcattt cttcctgtca tttcatttat ggtttctctg tattttcttg ccatttcagt
    11101 aattgagcct tcagaggatt ttagtaattc accgagattg gactcctcaa gtttttcagg
    11161 attggcagac catttcctga tattattcct tgtaaaatgc tcaggaggaa ttttatcagc
    11221 taattgacag aatttttcat agacgtcttc cttaactgca ctatcttgtt ttaattggga
    11281 taatagttcc atattcactt ctttaaataa tttaggaata tcttgttcaa ggagagtttt
    11341 cttatctgtt gatttattga gttcccggta ctcgaggctt aaatagctag ctactttagc
    11401 tgcttcttca ggatttaatg tcataaagaa ttcaatcact tcattattat gacaatgaga
    11461 aggcaagtct cggacaattt gttggacagc aggatcttta atcatttgaa attgttcttc
    11521 catttccaga gagataattt catcaagttt tgttgattta aaggcatagt tatctaattg
    11581 acagatatcc ttcaattgat ctcgaaatga ttgtacttct ttttgcagag tactcttaaa
    11641 taaattatat tcagcagaaa tgtctctatc aattttatcc aatgcttcta tggagtttaa
    11701 aactttttca agaacttggc tttttgttaa agattcactt tgcagaagag cattgatttc
    11761 ttgggatact ctttgcaatt cttcacattg ggtcttacga gcctcatttc ttgaaccttt
    11821 aaaccattca ctttttcttt tttcattgta aattttagca gttagatcta aaccttcggc
    11881 gattttattt aactccacat ccaataatgg cttggaagag tattttgacc aggtaattgc
    11941 actgaggttc tcgtgttgca gattattacg agaaagcaat cttaaaagat cttgtttttg
    12001 gttctctggt atgtcagtag ttttttcgag ctctttttga atggctggcc agttacggtt
    12061 gtaagcaata taattttgag tttcctttga gagcatggaa taattaggaa cacctgtggg
    12121 ggaggtagca accaaataat ccaataattc ttttggttta ctctctgcca gcagtttgac
    12181 gacttctttc ttgaattgat caaatttttc atatccttga gcgactacct cattcttgtg
    12241 atgtaaccga ttggaagttc ctgcctggag tgcttcttga tgacctgcaa gatcaccaag
    12301 gggatatttg cctttggttt gtcgagcgaa gaaatccagg aaatggcaac tcattctgcc
    12361 ttgatgggag aatatattcc cttttttatc aggatcagcg acaaaaaatt catcaaagtg
    12421 aggagagttc tcaataatgt gataacgttg agtaaatttt tcagtaattt cctcttgttg
    12481 cttgctgctt aactcagatg ttaatcccag ttcggcatgg tggctgttaa tgtaattgta
    12541 aataataggc tcaatctctg ctccttgaac aagtccttct ttcactcttt tagcaacttc
    12601 agtagcatgg ggctctttat caaaaaattc accgaagtta gcatctgata acttgttggt
    12661 tttacaataa aaattaatct cagctaatag atattggact ttaattgaca ttgtatttgt
    12721 atcagattca aattttattt ccttttgctt ctcatagaat acactaactt tttcagtacc
    12781 actttcactt tccttttttg gccaataatc agcttctgtt gtagcaccaa taattccata
    12841 aacccaatct ttcgcggtgg agttgtcatc taacgtacat gctatgtttt ccaaataatc
    12901 caagttaagt ggttggtgat aggtatcctc atccacttga agttcggaat caattttctt
    12961 gtactcttct agaacgagtt tttttatatc ctcaaatttt tgaccacgat cgccatcttt
    13021 tgtattaaaa tctttgtcaa gttgcactaa aacagaatct acgattttgt ccttcagtga
    13081 ttttttatta aaaacaatag gagtgtcttt atctggtggt agaagctcag aacgcaaacg
    13141 agcccctaat ccatcagttg cccgttggta tcccccagct tcatattgag atctgtttct
    13201 tttgagacta aacagaggat catcaaagcg ggtaaatgag tctggtctat ccggggaaag
    13261 ccttaaagca aaggcatttt cagaagattt aatgacttcc tttactccag aaggtaattg
    13321 cgggattcct tctgtgcgta gtttgtctat ttctctttgc tcatcaaatt tctctttgag
    13381 tactttgatt aaatcaatat atttttcgat ttgttccagg cgctcttttt tctcttttaa
    13441 tagatcttca taggcatttg gtgaaatttt tctttgaaca ccgattgcct ttatatcatc
    13501 ttccagattc tttttatatt catttaggtg atgttcagca gaatactttg tcccaccatg
    13561 cgtttttcca tagaaaaagg ttaataactc acctgttgtt tcacaggtat tatccagtcc
    13621 tatttcatcc ccacctacaa taggtaaaag aatatggact ttattatcct tagcgatatg
    13681 taaatattcg catcgctccg gctctttgaa ttttattttg tcaaccatgt tcatcaccct
    13741 atgctagtgt tctgactata agtatattat aaaatgatta taagtattta aaaataagtc
    13801 tgattgttaa aaagatgata atatttgtgt tttttctttc agtataaaaa actaatcatt
    13861 gttcctcata tacaagaatt gagctcacaa tttgagttat ctaaaacaat cgaatatgag
    13921 attttcgatt aaatcattgc gattttttga gttatgccta ccgcaatgaa ttgataaata
    13981 attacacttg ttatataata aatcctcatt ttgtttatgg aaggagacca ttgtgcctat
    14041 tattctagat tctgatgtgt tggaagtggc ggaatatgtg tataaaacac gcttatctca
    14101 gccttacact gaagtgggtt ctgaatggga gtataattac aagaatccaa cagccacttt
    14161 tgcaaaaggc gatggccata acttgcaaag gtatattaca attgatggca agcagcttca
    14221 tcgccctatc catgggttag ctcatacgat gcgcacattg atgtatagcc aattgatgta
    14281 ttgctcctca aaaaaacaac cttccccaca cgtatgtcaa gacggacgaa caatagccga
    14341 tctcagtgaa cttgatctta aaaagataaa cattgcgcag ctattttttg tagccgggcg
    14401 cgaaagcgag gcttcttatg gtgatgctta tcatcgttat catctgtatg gggctaaaca
    14461 gttcgaagaa tatgcccgca agcatttgac tcatcttttt tcagaagaag aaatccgatt
    14521 gtactcacga tgtatagaag acagggtagg tgacagtttt gatggtaccc ctgaaggtta
    14581 tataattcac ttgtcacaca tgatcgattt gatgcgttgc aaaagcccgg ttgaagtatt
    14641 tttgggccac tcaaaagggg tttctggtat tgtacctaca ttgattcact tgtttggcaa
    14701 acaagatggc ttggatatta tgcattacgc ccgaggcttg tttgcggcta caggtgaggc
    14761 ggtgccctat attgattcat ctgaatggcc tcatttggga gttgacttga gtcgggtaca
    14821 acgcgcactc tctatcgttg gtgatatcaa tgtccctggg caagaggctg attctaaaaa
    14881 aacagcgcaa gccggttttt ctgtggatgg ttgttattct gcgttaacca gtgtgcctac
    14941 accttcctgg tatgagaaag agttaaaaga aatcgatgat gaaaaaatcg atgttaagga
    15001 agttgatgat agggagatag aaaaagaaca tgagatagtt gttccttcgc aggcaacaac
    15061 acctttaagt acagtaaaaa ctgactcctt tgtcgaaaaa cttctgaagc catttatgat
    15121 ttggaaaaag ccagaggtac aaacgactca accaacaacg gagaagacta ataaacctta
    15181 gcctgtttta tttaaagtaa tagagaaacg gattcactta gggaattaaa acgcaatgag
    15241 gtgttgtaac tatgtttagt tatctggata aattattaga tggaatattt ggataccaaa
    15301 agtcagatac tagtcagtta agcacctcaa cgccacctac tctaactact gttcctttga
    15361 aacaagaata ttttgtaaaa attggggaaa gtgaaacaca ggatctaggc ttactgccag
    15421 tggttagcaa gcgacataat caatcagttc ccttggagga aattcctttt gaggatacca
    15481 gacttgagtt gattgagctt tatattgcat tgttaaaaca atgtgtttta gatgaaaaac
    15541 tgaagagtat ccctgcgcag tatcttatat ctcattatct ttttataaaa accttagccg
    15601 caaacgaggg aaataaaggt cgaaaagatc tgtatcttaa tttatctcaa aaagtggctg
    15661 attatcttga aaaaaatgaa tctaaaatat ggagtatggc
//
LOCUS       DACVWI010000065        15302 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.065, whole genome shotgun sequence.
ACCESSION   DACVWI010000065 DACVWI010000000
VERSION     DACVWI010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 15302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15302
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.065"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            60..710
                     /locus_tag="JBH85_07405"
     CDS             60..710
                     /locus_tag="JBH85_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2271 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946024.1"
                     /translation="MPSYNNARLLEKRLQNCDTQLNQFFNGQELSIKFLQQLNQIKYF
                     YNSAFNKTENEDDGLEVVEEYENFISLVSQVKSGQINADKAFETIKDTTESRQADVII
                     ANFFKVCELMFWATAAFFSYVACVSVGIPLTFCDPLLGIAVSLSTFLMAISTASKFLD
                     CFDEFQSLDKINEHDQNQKDTVRFFSKTSNSTSSVRNKEAEVEESSQRLYPNLQTV"
     gene            complement(885..1376)
                     /locus_tag="JBH85_07410"
     CDS             complement(885..1376)
                     /locus_tag="JBH85_07410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 domain-containing protein"
                     /protein_id="HAU0946025.1"
                     /translation="MMIIRFSKVLLVVAVSFFCLLTAFGNITDYSANFPAVVKVLTMS
                     DIFPDSTITYRAITSPVLHYVAFIIIVILELLTAIFCGIGAWKLFKARNESASVFNHS
                     KNWAIGGLTLGFVTWQVIFMSIGGEWFGMWMSPTLNSALTTAFHIFITILAVMIYLVI
                     KDE"
     gene            complement(1518..2831)
                     /locus_tag="JBH85_07415"
     CDS             complement(1518..2831)
                     /locus_tag="JBH85_07415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HAU0946026.1"
                     /translation="MKILFLLLLIFLSVIPAQAKPVELVFWHAMAGHLGDEVRLLADD
                     FNKSQNQYRVKPIYKGNYTETLTNFAAAFRARQAPSIVQIFEVGTSIMLAPPGVIKPV
                     DLLMSEQGISLPKDDFIQSVREFYSRDGQLMAMPFNLSAPVLYYNADILAKVGYGKHN
                     FPQTWSAMEIMAEKIKKAGYDCTYTTAYPGWVLFESFLAIHGLPITQGNPARAVFHTP
                     QLMAHFQRLKRWHDLHYFRYGGRVDDATILFTSSVCPLFSQSSGAYNSLSALVPFHLG
                     VATMPLDTGASPIRHANVAGGAALWAVGGQTEEQYRGIARFFAFIAKPEVQKRWHEHT
                     GYLPLGLKGIYASIVQSSQHPALLLARTDLEDNLPEKPYKHMGPQNQIRGINDEVLEA
                     MFADLMSPEEALNEATIRANHLLLRFARNTQRERVVDDKVGKGLG"
     gene            complement(2828..3547)
                     /gene="ugpQ"
                     /locus_tag="JBH85_07420"
     CDS             complement(2828..3547)
                     /gene="ugpQ"
                     /locus_tag="JBH85_07420"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HAU0946027.1"
                     /translation="MILEKIIGHRGASGYAPENTMASFNKALSLGCRFIEFDVMCSLD
                     GEPFIIHDDNLKRTTNGKGEVGLMEADYLRGLDAGSWYSKQYKGEKIPHFTDVLKWLS
                     FSDVQANIEIKPYPGTVEQTTVSVLSHIHRHWPQNKELPLVSCFEWDALVLCRSIAPE
                     MPLGLLLHEWDKDWLQKAKQLECYSIHFNRKILTADRVKAVKDQGYVVCAYTVNRKRL
                     AKKLFDWGVDALFSDYPDLLK"
     gene            complement(3552..4259)
                     /locus_tag="JBH85_07425"
     CDS             complement(3552..4259)
                     /locus_tag="JBH85_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946028.1"
                     /translation="MEHIMRKIAWILGLMVLTPFVWADNETPDLVLDKIFFQVSAKKW
                     VTTQTALLNVSINATLSNADLVKARADIMDSLNKIAKGEWHLVQFDRSQDSSGLEKLY
                     VQAQARVDQSALTNIYQNAKSVSKPGAKYEISGVEFKPSLEETQVVRAKIREQLYQQV
                     NDEIDRMNKAYPKQNYSVSNLVFFEGDNIPQQPRAYQAKEMNALAMAAAPAPLTVSNE
                     LILTAMVEAASNRKQGD"
     gene            4560..5633
                     /locus_tag="JBH85_07430"
     CDS             4560..5633
                     /locus_tag="JBH85_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid dehydrogenase"
                     /protein_id="HAU0946029.1"
                     /translation="MMSVDNIKNDNQVLAEEDFLEYALSHGFGDLHFKVDPQTGMKAM
                     IAIHSTKLGPALGGCRFIEYPNTAAALKDAMRLARGMSFKAASVNLPLGGGKSVIIKP
                     KGFFNRAEYMHRFGEFVNELNGRYITALDSGTELSDMDIIAEHTDYVASLSRYNGDPS
                     PSTSKGVLRGIQAAVAFKLGKDSLKGLHIAIQGLGHVGYALAKQLHELGATLTVADIS
                     PAAVNMAVQELGAKAVGTDIIHKVPCDVFAPCALGAIINDLTIPQLQTSIIAGAANNQ
                     LAHTYHGKILHEKGILFAVDYVINAGGLIFAASKYLQTPEDKVSEQIDSIYTSLTEIF
                     TRSAKDNLPTSEIADTLAKEKLA"
     gene            5648..6304
                     /locus_tag="JBH85_07435"
     CDS             5648..6304
                     /locus_tag="JBH85_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HAU0946030.1"
                     /translation="MKHLSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAP
                     EQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPY
                     WREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTP
                     KGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI
                     "
     gene            6332..7417
                     /gene="hppD"
                     /locus_tag="JBH85_07440"
     CDS             6332..7417
                     /gene="hppD"
                     /locus_tag="JBH85_07440"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HAU0946031.1"
                     /translation="MHCYVNKYKENLIMQNNNPCGLDGFAFLEFSGPDRNKLHQQFSE
                     MGFQAVAHHKNQDITLFKQGEIQFIVNAASHCQAEAHASTHGPGACAMGFKVKDAKAA
                     FQHAIAHGGIAFQDAPHANHGLPAIQAIGGSVIYFVDEEHQPFSHEWNITSPEPVVGN
                     GLTAIDHLTHNVYRGNMDKWASFYASIFNFQEIRFFNIKGKMTGLVSRALGSPCGKIK
                     IPLNESKDDLSQIEEFLHEYHGEGIQHIALNTNDIYKTVNGLRKQGVKFLDVPDTYYE
                     MINDRLPWHKEPLNQLHAEKILIDGEADPKDGLLLQIFTENIFGPVFFEIIQRKGNQG
                     FGEGNFQALFEAIERDQVRRGTLKELS"
     gene            7473..8471
                     /locus_tag="JBH85_07445"
     CDS             7473..8471
                     /locus_tag="JBH85_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HAU0946032.1"
                     /translation="MKLASLKSTRSRDGELCIVNRLLTAAIRVPHIASTLQYALDHWD
                     VVEPKLQLVYQQLNDNQIEDAFAFAPELCASPLPRAYQWADGSAYVNHVELVRKARGA
                     EMPADFWTNPLMYQGGSDAFLGPRDPILVSSEAYGIDFESEVAVITDDVPMGIDHTNA
                     AHHIKLLMLVNDVSLRNLIPEELAKGFGFFQSKPASSFSPVAITPDELGSYWDGQRVN
                     LPLISHLNEQLFGQPNAGVDMTFSFPELIQHAAKTRFLTAGTIIGSGTVSNLDRSKGS
                     SCIAEKRMLEMIEFGQAKTPFMRFGDRIRIEMLDGQGYSLFGSIDQIVTKYDKDSL"
     gene            8468..9106
                     /gene="maiA"
                     /locus_tag="JBH85_07450"
     CDS             8468..9106
                     /gene="maiA"
                     /locus_tag="JBH85_07450"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HAU0946033.1"
                     /translation="MILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQ
                     YHQINPQELVPSLDINGQILSQSMAIIDYLEEIHPEMPLLPKDPFMKATLKSMALIVA
                     CDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGS
                     EVGLADVCLIPQVYNAHRFHFDMASYPIINEINEYCLTLPAFHDAAPEAISS"
     gene            complement(9103..9663)
                     /locus_tag="JBH85_07455"
     CDS             complement(9103..9663)
                     /locus_tag="JBH85_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946034.1"
                     /translation="MLQRVLLVLLCFFSFLASASDTVLKLYRPFGDVFEQAPPVIKKI
                     MSGQCYEQSHIIIREDAWRCQAEGQLFDPCFVKAGSKKMEAVCPQSPWVGDSVQINVE
                     VPLNNEYHKTLDMSRAFPWAIELVNGEYCLAINSNEQYDSMPVRYRCSNQNVLIGYLQ
                     RCKTAWSMLEKTPKGVITVELRRAWF"
     gene            9811..11214
                     /gene="asnS"
                     /locus_tag="JBH85_07460"
     CDS             9811..11214
                     /gene="asnS"
                     /locus_tag="JBH85_07460"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096294.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HAU0946035.1"
                     /translation="MTEVFTIKQCLDGEISIDETVTVRGWVKTRRDSKAGLSFISLHD
                     GSCFSPIQIVATDQLSNYHKEVTKLTAGCSMIATGKLVASQGKGQFFEIQAESIEVVG
                     WVENPDTYPIQAKRHTLEFLREVAHLRPRTNTISAVTRVRHSLAQAIHRFYHEQGFFW
                     VHTPIITASDCEGAGEMFRVSTLDLLNIPKNDKGQIDFSKDFFGRETFLTVSGQLNVE
                     AYCMAMSKVYTFGPTFRAENSNTSRHLAEFWMIEPEIAFANLEDICKLSQNMLRYLCK
                     TVLEERADDMDFFNQFVAPGCIERMEHIADSEFEIMTYTDAIKALEASDQKFEFPVSW
                     GLDLQSEHERYLAEVLCKKPVIVTNYPQEIKGFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEILDRRMDECNLNKEHYQWYRDLRRYGTVPHAGFGLGFERLISYVTGVS
                     NVRDVIPFPRTPGHADY"
     gene            complement(11211..11609)
                     /locus_tag="JBH85_07465"
     CDS             complement(11211..11609)
                     /locus_tag="JBH85_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946036.1"
                     /translation="MDEKKDKTIQINEMTSTVEDEKKAQPLRKSERSLPVKSHRRSFS
                     IFYPYSTENSKVLSSEQASNKGFLPGPDFNREQYDTVDTGGPLASIPEDEILEKIFSP
                     RNRRRLLSEGNQPQQQTAEVEEDSLSALSI"
     gene            complement(11633..12316)
                     /gene="lolD"
                     /locus_tag="JBH85_07470"
     CDS             complement(11633..12316)
                     /gene="lolD"
                     /locus_tag="JBH85_07470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HAU0946037.1"
                     /translation="MNDIILTSQKLYKSYHDGTSTVEVLKGVDLAITKGDRIAIIGPS
                     GSGKSTLLHLLGGLDKPTSGLITLGNVNWQKINEKQRCQLRNQQLGFVYQFHHLLPEF
                     TALENVMMPLLLAGMAVKDAEEKAINMLEHVGLKPRLAHKPAQLSGGERQRVAIARAL
                     VHQPHCVLADEPTGNLDEATASKVFDLMLELNKKMNTALVIVTHDQRIAERMDRVLVL
                     HEGSLYARE"
     gene            complement(12309..13664)
                     /locus_tag="JBH85_07475"
     CDS             complement(12309..13664)
                     /locus_tag="JBH85_07475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HAU0946038.1"
                     /translation="MSDDELLISSLKSLGFNLGLFYKYCTILTLIQLNTIMYKPLALF
                     IGLRYTRSRKKNHFVSFISLSSMLGIGMGVMVLITVLSVMNGFDQEIHRRFFGMAPEI
                     TITGPDERLSDWPEVVKKVETIPGIKAIAPYVGSQGLLTHEGQVLPIVLTGILPEKEQ
                     SVTHLNKKLLAGNMSNLKHFGIILGKGLADSLGVMIGDKVTIMIPQATVTPAGMIPRF
                     KRFTVVGVFSAGTGFNFDTKLAFINIEDAQKLMQMDKNDVSGIKMKINNVYKAPELSY
                     ELSDLLGEGYQVGNWTQQFGAFFEAVKMEKTMMFMILLLIIAVAAFNLVSSLVMVVND
                     KQAEIAILRTIGATPSTILWVFIVQGMMVGLVGTILGLLGGLVLANNATEIVNALQSF
                     FQVKVLSSSIYFVDYLPSKIMFRDLWQVCAMALLMSFAATIYPAWRASKTVIAEALHY
                     E"
     gene            complement(13795..14769)
                     /locus_tag="JBH85_07480"
     CDS             complement(13795..14769)
                     /locus_tag="JBH85_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HAU0946039.1"
                     /translation="MLEKRFALNPYIKQKQRYNSYYSFKWHNQESAMSLYRELENIYK
                     AGPTHMVGDGFRVINFIPGDSDLAKRLNPFVLLDYNPSFYFPPTDSPLGVGPHPHRGF
                     ETVTIAYKGAVAHHDSDGNHGIIEAGDVQWMTAGAGILHKEYHATHFAKQGGLLQMVQ
                     LWVNLPALYKNTPPAYQALTKQQMGLYHFSNQQGLLNIIAGNYDGVHGPAKTFTPINL
                     FDIRLLAQSEAILELPSDHNVAILVLEGKITINQNQSAHENQLLVFSLSAGKIKINSE
                     GKNAILLVLSAEPLLEPIAHHGPFVMNTREELQQAFIDFYEGKFGNLE"
     gene            complement(14687..>15302)
                     /locus_tag="JBH85_07485"
     CDS             complement(14687..>15302)
                     /locus_tag="JBH85_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HAU0946040.1"
                     /translation="LLAIDSSILTNTSVSRQLTRSFVSRWQKIYPETEVVYRDLHAQP
                     INHLSQKILAANSVPSTQISAEIREEMNLSMQLISELLSASVLVIGAPMYNFSIPSQL
                     KSWIDRIVIAGKTFKYVDGKVQGLATGKRAYILSSRGGFYNAEPALNLDHQERYLTSI
                     LNFIGISDITFIRAEGVNVGEEIRTQSLHQAEAKIQQLLQFQMA"
BASE COUNT         4709 a         3185 c         2881 g         4527 t
ORIGIN      
        1 ccaataattc gttataaatc aataggattt taaatttata attacaatcg aggtaaacta
       61 tgccttctta caacaatgcc cggctcttgg aaaaacgttt gcaaaactgt gatacacaat
      121 taaatcaatt ttttaatggc caggaattat caataaagtt tctccaacaa ttaaatcaaa
      181 tcaagtattt ttataattca gctttcaaca aaaccgaaaa tgaagacgat ggcctcgaag
      241 tcgttgagga gtacgaaaat ttcatttcgt tggtctcaca ggtaaaatct gggcaaatta
      301 atgctgacaa agcgtttgaa acaataaaag atacgacaga atccaggcaa gcagacgtta
      361 ttattgctaa tttctttaaa gtttgtgaac tcatgttctg ggctactgca gcatttttta
      421 gttatgtagc ctgtgtatca gtaggtatcc ccttaacttt ttgtgatcct ctcttgggta
      481 tcgcagtctc cttatctacc tttttgatgg caattagcac agcaagcaaa tttttagact
      541 gtttcgatga gttccaatca ttagataaga ttaacgagca tgatcaaaat caaaaggata
      601 ccgtacggtt tttcagtaaa acgtcaaact ccacttcatc agtacgtaat aaagaagctg
      661 aagtagaaga aagctctcag agattatatc cgaatttaca aaccgtctaa attaataaac
      721 aatgacacat cagaccaaag attattttgg tctgatgttt tggtttgctt taaagagcat
      781 aatcaaaatt aaggcaatac ataagtcacc tcatgtttaa atactttcta aacagccgct
      841 ccgataggag gctactctgt tacaaattaa tctctggaat ttctctattc atccttaatc
      901 accaaataaa tcataacggc taaaatagta atgaagatat gaaaagctgt ggtaagggct
      961 gagttgagcg tgggagacat ccacatacca aaccactctc ctcctatgga cataaaaatc
     1021 acttgccagg ttacaaaacc caacgtaaga cctccaatag cccagttctt ggaatgatta
     1081 aaaacagaag cactttcatt tcttgcctta aacaatttcc acgcaccaat tccacaaaat
     1141 atggcggtta ataattccag gataacaatg ataataaatg caacataatg cagaactgga
     1201 ctagtaattg ctcgataggt gatggtggaa tcaggaaata tatcgctcat ggttaatact
     1261 tttaccacag caggaaaatt ggcggaataa tcagtgatgt ttccaaatgc agtaagtaag
     1321 caaaaaaagg aaacagcaac aacaagcaac acttttgaga atctgataat catcatttca
     1381 tcctttgaaa caagttaaaa aatatgtatc acctaattga taagaacgtt cgtggagagg
     1441 atgcttatgc tcgtttctca ccaagccagg ttcgctttct tcaagcttcg ctaaccaaac
     1501 cgatgaatca aaaaatctta gcccaaaccc ttgcccactt tatcatcaac taccctttct
     1561 ctttgagtat ttctggcaaa acgtaacaat aaatgattcg ctctgatcgt cgcctcgttc
     1621 agagcttcct ccggactcat caaatctgca aacattgcct ctaaaacctc atcattaatt
     1681 ccacgaattt gattttgcgg gcccatgtgt ttataaggtt tctcaggtaa attgtcctcg
     1741 agatctgttc tggctaataa taaagcggga tgttgacttg attgcacaat gctagcgtaa
     1801 attcctttta accccaacgg caaataaccc gtatgctcat gccagcgctt ttgcacttca
     1861 ggttttgcaa taaatgcaaa aaatctggca attcctcgat attgctcttc tgtttgtcct
     1921 cctacagccc atagagcagc accccctgcc acattcgcat gtcttatcgg actggccccc
     1981 gtatccaaag gcattgttgc aacacccaaa tgaaaaggaa caagggcaga caaactatta
     2041 taagcccccg atgattgact aaataaagga caaacactac tggtaaataa aatggtagca
     2101 tcatcaacac gaccaccata acgaaaataa tgcaaatcat gccagcgctt tagacgttga
     2161 aaatgagcca ttaattgggg agtatggaaa acagcacgag caggattacc ttgagttatg
     2221 ggcaacccat ggatagcaag aaaagattca aataacaccc atccaggata agccgtagta
     2281 taagtacagt cataaccggc ttttttaatt ttttctgcca ttatttccat tgctgaccag
     2341 gtttgaggga agttatgctt gccatatccc accttggcta aaatgtcagc attatagtac
     2401 agaactggtg ccgagagatt gaaaggcatc gccattaatt gcccatccct gctataaaac
     2461 tcacgcactg attgaataaa atcatcttta ggcaaactga tcccctgctc actcatcaac
     2521 aaatcaacgg gtttgatcac accaggggga gctaacataa ttgaagtgcc tacttcaaaa
     2581 atttgaacta ttgatggtgc ttgacgagct ctgaatgcag cagcaaaatt ggtaagagtt
     2641 tccgtataat ttcctttgta aatcggtttg actcgatatt gattctgact tttattaaaa
     2701 tcatcagcaa gcaaacggac ttcatcaccc aaatgccctg ccatcgcatg ccaaaaaacc
     2761 agctcaactg gtttggcctg agcaggaatg acactcagaa aaattaacaa aagcaaaaag
     2821 agtattttca ttttaacaag tctggataat cactaaagag agcatcaaca ccccaatcaa
     2881 ataacttttt ggccaaacgt ttacggttta cagtataggc gcatactaca tagccttgat
     2941 ccttaactgc cttcactcga tcagcggtta atatctttct attgaaatgt attgaataac
     3001 attccaattg cttcgccttc tgtaaccaat ctttatccca ctcatgcagc aagagcccta
     3061 aaggcatttc tggagcaata ctgcggcata ataccaaagc atcccattca aaacaggaaa
     3121 cgagaggtaa ttctttattt tggggccaat gccgatggat atgacttagc actgatacag
     3181 tagtttgctc aaccgttcca ggataaggtt ttatttctat gttcgcctga acatcggaaa
     3241 aagacaacca ctttaatacg tcagtaaagt gtggaatttt ttctccctta tactgcttcg
     3301 aataccaaga gccagcatca agaccacgga gataatctgc ctccatcagt cccacctctc
     3361 cttttccatt cgtggttcgt ttcaaattgt catcgtgaat gataaaaggt tcaccatcaa
     3421 gactgcacat cacatcaaac tcaatgaaac gacaacctaa agacaatgct ttattaaaag
     3481 acgccatcgt attttctgga gcataacccg atgctccccg gtgaccgata attttttcaa
     3541 ggatcaacta attaatctcc ctgtttgcga ttggatgctg cttctaccat agcggtcaat
     3601 attaattcat tactcactgt caatggtgcc ggagcagcag ccatcgctaa agcattcatt
     3661 tctttcgctt gataggctct tggttgctgg ggaatgttgt caccctcgaa aaaaaccagg
     3721 ttacttacag agtaattttg cttgggatag gctttattca tacgatcaat ttcatcattc
     3781 acttgctgat aaagctgttc acgaatcttg gcacgtacga cttgagtctc ttccaaactg
     3841 ggtttgaact ccacaccact gatctcgtac ttggctccag gcttactgac cgatttggca
     3901 ttctgataaa tattagtcag agcagattga tcgactcttg cctgagcttg tacataaagt
     3961 ttctcaaggc cagaactatc ctgagaacgg tcaaactgca ccaaatgcca ctccccttta
     4021 gcaattttgt ttaagctatc cattatgtca gcacgtgctt tcaccaaatc agcattactt
     4081 agagtggcat tgatactgac attgagtaac gctgtttggg tagtaaccca ttttttagca
     4141 gaaacttgaa aaaaaatctt atcaagcacc aaatctggtg tctcattatc agcccaaaca
     4201 aaaggagtta agaccattaa acccagtatc caggcaattt ttctcataat atgctccatt
     4261 cataatgttt ctattggaat tagtgtatac cagcaagcta gaagacacca cagcagtttg
     4321 aacataatca ctctaaaaca aatcctatac ggcattgcct gcaaacagtc ggatttgagt
     4381 acaggttgag aaaataaaca gagtaaaaaa gcggcgtgta cattaaagta catgagcatt
     4441 ttttagaatg tttttttctc aagatgcgcc aaatacggcc gtttgctaag aattacattg
     4501 atttaattga cgaatagatc tataacttct tccaaaatta ttgcaagagg agcttaaaaa
     4561 tgatgtctgt tgacaatatt aaaaatgata accaggtttt ggctgaagaa gatttcctcg
     4621 aatacgcatt gtctcatgga tttggtgatt tacattttaa ggtggatccg caaacgggga
     4681 tgaaggctat gattgcaatt catagcacca agttgggacc tgctttgggt ggttgtcgat
     4741 ttattgaata tcctaatact gctgctgctt tgaaggatgc tatgcgcctt gccagaggca
     4801 tgagctttaa ggctgcttca gtcaatttac ctttgggcgg tggaaaatca gttattatta
     4861 agcctaaggg gttttttaat cgagcagaat acatgcatcg gtttggtgaa ttcgttaatg
     4921 aattgaatgg caggtacatc actgctttgg atagcggtac tgaattaagt gacatggata
     4981 ttattgctga gcatactgac tatgttgcca gtttatccag atacaatgga gatccttcac
     5041 cttctacttc caagggtgtg ttaagaggga ttcaggctgc tgttgccttt aaattaggta
     5101 aagactctct caaaggtttg catattgcta ttcagggtct tggccacgtc ggttatgctc
     5161 tggcaaaaca attacacgaa ttgggcgcga cattaactgt tgctgatatt tcacctgctg
     5221 ctgtgaacat ggcggttcaa gagttgggag ctaaagcggt cggcactgac attatccata
     5281 aagtaccgtg tgatgtattt gctccttgtg ctttaggtgc gattatcaat gatcttacta
     5341 ttccccagtt acaaaccagt attattgctg gcgctgccaa taatcagctc gcacacacat
     5401 accatggcaa gattttacac gaaaaaggca ttctgtttgc tgtggattat gtgattaatg
     5461 caggtggttt gatatttgct gcctctaaat acttacaaac gcctgaagac aaggtaagtg
     5521 agcaaattga tagtatctat acctctctga ctgaaatttt tactcgctct gctaaagata
     5581 atttacctac tagcgagatt gctgatactt tggctaagga aaaattggct taatttggat
     5641 accgtttatg aaacatttat cccttactcc tgagttgtac aaatacctgc ttgatatttc
     5701 cttgcgtgaa catcctgctc ttgcggcatt acgcaaagaa acatccacta tggaactcgc
     5761 caatatgcag gtagctccag agcaagccca atttatgcag atgctgatac gtttgactcg
     5821 tgcaaagaag gtattggaac ttgggacatt cacaggttat agtgccttgg ccatgtccct
     5881 tgctttgcct gatgatgggc aagttatcac ctgtgatatt aatgagggat ggacaaaaca
     5941 tgctcatcct tattggcgtg aagccaaaca ggaacataaa attaaattac gccttggacc
     6001 tgctcttgac actttacact cattacttaa tgaaggtgga gagcatcaat ttgatttcat
     6061 ttttattgat gctgacaaaa ctaattatct gaattactat gaactggctt taaaattagt
     6121 tacacctaaa ggattaattg ccatagataa tattttttgg gatggaaaag taattgatcc
     6181 gaatgatacg agtggacaaa ccagagaaat taaaaaatta aatcaagtga ttaaaaacga
     6241 ttcaagggtc tttgtcagtt tgttagctat agctgatggg atgtttctgg tgcaacccat
     6301 ttaatcttta aaatccccgg caagcaatac actgcattgc tatgtaaata agtacaagga
     6361 gaatctgata atgcaaaata acaacccctg cggattagat ggctttgcct ttttagagtt
     6421 ttcaggccct gataggaata aattacatca gcaattttct gagatggggt ttcaggctgt
     6481 tgcccaccat aaaaatcaag acattactct tttcaaacaa ggggaaatac aatttatagt
     6541 gaatgcggcc tcccattgtc aggcagaagc gcatgcttca actcatggtc caggcgcttg
     6601 tgcaatgggc tttaaagtaa aagatgccaa agccgctttt caacacgcta tcgcgcatgg
     6661 cggtatagca tttcaggatg cacctcatgc caatcacggc ttgccagcca tccaggctat
     6721 tggtggtagt gttatttatt ttgtcgatga agaacaccaa cccttctctc atgaatggaa
     6781 tattacctca ccagaacccg tagttggaaa tggtctgaca gcaatcgacc atctcaccca
     6841 taacgtttat cgcggtaata tggataaatg ggccagtttc tatgcttcca tttttaactt
     6901 ccaggaaatt cgttttttca atatcaaagg aaaaatgaca ggtttggtta gtcgagcatt
     6961 aggtagccct tgtggcaaaa tcaaaattcc tttaaacgaa tccaaagatg atttatcaca
     7021 aattgaagag tttcttcatg aatatcatgg cgagggcatt caacacatcg ctctcaatac
     7081 caatgatatt tataaaacag tcaacggctt aagaaaacaa ggggtcaaat tcctggatgt
     7141 gccagatact tactatgaga tgattaatga ccgcctccca tggcacaagg agccactgaa
     7201 tcaactccat gctgagaaaa ttttaattga tggagaagca gatcccaaag acggcttgtt
     7261 actgcaaata tttactgaaa acatatttgg accagtcttt tttgaaatta ttcaacgcaa
     7321 aggcaatcag gggtttggtg aagggaattt ccaggctcta ttcgaagcta ttgaaagaga
     7381 tcaagttcga cgtggtactt taaaagaatt aagctagaca aacagttgaa atgtaatgat
     7441 gctgtttttc aggcataagc caggagatct atatgaaact cgccagtttg aaatcaactc
     7501 gttcccggga tggagagctt tgcattgtca acagattgct gaccgctgca atacgcgttc
     7561 ctcatatcgc atcaacactt caatatgccc tggatcattg ggatgttgtt gaacccaaat
     7621 tacaactggt ttatcaacag ttaaatgata atcaaatcga agacgccttt gcgtttgctc
     7681 ccgagctatg tgcctcgcca ttaccccgtg cttatcaatg ggccgatggc agtgcctatg
     7741 taaaccatgt cgaattggtt cgtaaagcca gaggagcaga aatgcctgct gatttttgga
     7801 ccaatccact catgtatcaa ggcggatctg atgcttttct ggggcctcgt gatcctattt
     7861 tggtaagctc agaagcctat ggaattgact ttgaatccga ggtggctgtt atcactgatg
     7921 atgttcccat ggggattgat catacaaacg ctgcccatca tatcaaactg ttgatgttgg
     7981 ttaatgatgt ctctctacgc aatcttatac ccgaggaact ggcaaaaggg tttgggttct
     8041 tccaatcaaa acctgccagc agcttctccc cggtagcgat aaccccggat gagctaggtt
     8101 cttactggga tggacagcgt gtgaatttgc cattaattag ccatttgaat gaacagttat
     8161 ttggtcaacc caatgccgga gttgatatga ccttttcttt tccagaactg atacagcatg
     8221 cggcaaaaac aaggttttta actgcaggca ctattatagg ttctggaaca gtatccaacc
     8281 tcgaccgcag caaaggctct tcttgtatcg ctgaaaagcg aatgctggaa atgatcgaat
     8341 tcggacaggc aaaaacaccg tttatgcgat ttggtgaccg aattcgcata gaaatgctcg
     8401 atggtcaagg gtattcccta tttggctcca ttgaccaaat agtgacgaaa tacgataagg
     8461 actccttatg attttgtatg attatttccg ctctaccgca tgctatcgag taagaatcgc
     8521 tcttaattta aaaaaaattg cttacgaaaa aattgaagtg catctggtta ataatggtgg
     8581 cgagcagcat agccttcagt atcatcaaat taaccctcaa gaacttgttc ctagccttga
     8641 catcaatgga caaatcctga gccaatcaat ggcaatcatt gattatttgg aagaaatcca
     8701 tccggaaatg cctttgcttc ctaaagatcc ttttatgaaa gcaaccctaa aatcaatggc
     8761 tttaattgtt gcttgtgata tgcaccctct taataattta agagtactaa atcgcttaaa
     8821 agagcaattt aatgccaatg aagaacaggt actggaatgg tatcaccatt ggctaaaaac
     8881 aggatttgat gcttttgagg aaaaacttgg agctttggag cgcgacaagc cagtctgctt
     8941 tggaagtgag gttggtctgg ccgatgtctg tttgatcccc caagtttata atgctcaccg
     9001 atttcatttt gatatggcga gttacccaat aatcaatgaa attaatgagt attgtttaac
     9061 cctaccggca ttccatgatg cagcaccaga agccatttca tcttaaaacc atgctcttct
     9121 caactctacc gtgattacgc ctttaggggt tttctccaac atactccagg ctgttttaca
     9181 tcgttgcagg taaccaatta aaacattttg attgctgcaa cggtacctta caggcattga
     9241 atcatattgt tcgttagaat ttatagccaa acaatactca ccattaacca attcaatagc
     9301 ccagggaaaa gcgcgagaca tatctaaggt cttatgatat tcgttattca aaggtacctc
     9361 tacgttaatt tgtacactat caccaaccca tggcgattga ggacaaacag cctccatttt
     9421 tttactacct gcttttacaa aacagggatc gaataattga ccttccgcct gacaacgcca
     9481 cgcatcttcg cgtataatga tgtgggattg ttcataacat tggccagaca ttattttttt
     9541 aatgacaggt ggtgcttgtt caaaaacatc accaaaaggt ctgtataatt ttagaacagt
     9601 atcgctggcg ctggctaaaa aagaaaaaaa acatagcaat acgagtaaaa ctctttgcag
     9661 catggtgttc ccccacggat tttatttagt gtatcatcac attttaattc agggtttagg
     9721 aaatactaca aacgggagaa aatcaatccc tcgaaggatt ggaatatttc ctaagccctg
     9781 aatcaatcgt tttcgatttt ggagtatata atgacagaag tctttactat aaaacaatgt
     9841 ctcgacggcg aaatcagtat tgatgaaacc gttacggtaa gaggatgggt gaaaactcga
     9901 agagattcaa aagctggctt gtctttcatc agccttcatg atggctcttg cttttctccc
     9961 atacaaatcg tcgctaccga tcagttatcc aactaccaca aagaagtaac aaaattaact
    10021 gctggctgtt caatgatagc gactggaaaa ttggtagcat cacaaggaaa agggcaattt
    10081 tttgaaatcc aggccgaatc tattgaagtg gtgggatggg ttgaaaaccc agacacatac
    10141 cctattcaag ccaaacgcca tactcttgag tttttaagag aagtggctca tctgcgcccc
    10201 agaaccaata ccataagcgc tgtcaccaga gtacgtcatt ctttggcgca agccattcat
    10261 cgtttttatc acgaacaagg ctttttttgg gtgcatacac cgatcattac tgccagcgac
    10321 tgtgaaggag caggagaaat gttcagagta tctactctgg atttattaaa tatccctaag
    10381 aatgataaag gacaaatcga tttcagtaag gatttttttg gcagagaaac gttcttaact
    10441 gtttctggcc aactaaatgt cgaagcttat tgtatggcca tgtctaaggt ctacactttt
    10501 ggaccaacat ttcgggctga aaattcgaat acaagccgac atttggctga attctggatg
    10561 atcgaaccag aaatcgcttt tgcaaatctg gaagacattt gtaaactcag ccaaaatatg
    10621 ctgcgttatc tctgtaaaac ggttcttgaa gagcgtgccg atgatatgga ctttttcaat
    10681 caatttgtcg ccccaggttg tatagaacgt atggaacata ttgcggattc tgaatttgaa
    10741 attatgacct atactgatgc gataaaagca cttgaggcga gtgaccaaaa atttgaattt
    10801 ccagttagct gggggctgga tctgcaatca gagcatgaac gttacctggc tgaagtgctt
    10861 tgcaaaaagc ctgtcattgt gacaaattac ccgcaagaaa ttaaggggtt ttacatgcgt
    10921 cttaatgacg atgggaaaac ggtagccgcc atggacgttt tagctccagg catcggagag
    10981 attatcggcg gcagccaacg cgaagagcgc ttggaaatac tggatagacg catggacgaa
    11041 tgcaacctga ataaagaaca ttaccaatgg tatagagact tgcgtcgtta tggcactgtt
    11101 cctcatgccg ggtttggctt gggctttgaa cgccttatca gctatgttac aggagtatcc
    11161 aatgtgcgag atgtgatacc tttccctcgc acaccaggcc atgccgatta ttaaatcgat
    11221 aaggcgctta aagaatcttc ctcaacttca gctgtttgtt gttgaggttg attcccctca
    11281 gacagcaatc gacgtctatt tcttggcgaa aaaatttttt ctaatatttc atcctctggg
    11341 atacttgcaa gcggccctcc tgtatccact gtatcatact gttccctatt gaaatcaggt
    11401 ccaggtagaa atcctttgtt acttgcctgt tctgaagaaa gcacttttga attttcggtt
    11461 gagtaaggat aaaaaataga aaaacttctt ctatgtgact ttacaggtag actacgctcg
    11521 gattttctca atggttgggc ttttttttcg tcctcaacag tgcttgtcat ttcattgatc
    11581 tgaattgttt tatctttttt ttcatccatt gttaacactc cttatcttat ttttattctc
    11641 tcgcatacaa actgccttca tgcaaaacaa gtactctatc catacgttct gcaatccgtt
    11701 gatcatgagt tactataacc agggctgtat tcattttttt attaagttcc aacatcaaat
    11761 caaaaacttt actggccgtt gcctcatcca aatttccagt cggctcatca gccagaacac
    11821 aatgtggctg atgcaccaag gctctcgcta tggcaaccct ttgcctttct cctccagaca
    11881 actgagcagg cttatgcgct aatcgtggtt taagccctac atgttccagc atattaatgg
    11941 ctttttcttc cgcatctttc acagccatac ccgccagtaa taacggcatc atcacatttt
    12001 caagtgccgt aaactcgggt aacaaatggt ggaattgata aacaaatcct aattgttgat
    12061 tgcgcaattg acaacgttgt ttttcattta ttttttgcca attgacattg ccaagagtaa
    12121 tcaggccgct ggttggttta tccagccccc ccaacaaatg caaaagggta ctttttccag
    12181 aacctgatgg cccgataata gcgatcctgt ccccttttgt tatggccaag tccactcctt
    12241 ttaacacctc aactgttgaa gtgccatcat ggtaggactt atacagtttt tgactggtta
    12301 aaatgatgtc attcataatg caaagcctcc gcgatgactg tctttgatgc tcgccaggca
    12361 ggataaatag ttgcagcaaa actcattaat aatgccatag cacaaacttg ccacagatca
    12421 cgaaacataa ttttagaagg caagtaatca acaaaataga tgcttgaaga caacaccttc
    12481 acctggaaaa aggactgcaa tgcattaact atctccgttg cattattggc caacactaaa
    12541 cctcctaaca gcccgagaat tgtaccaacc agaccaacca tcattccctg tacaataaaa
    12601 acccataaaa tggtagaagg agtagcgcca atagttctta aaatggcaat ttcagcttgt
    12661 ttgtcattga ctaccattac cagagaggac accaaattaa aagcagccac agcaataata
    12721 agcaataaaa tcataaacat catcgttttt tccattttaa ctgcttcaaa aaaagctcca
    12781 aattgttggg tccaattgcc tacttgatat ccttctccca aaagatcgga taattcataa
    12841 gacaattcag gtgctttgta tacattatta attttcattt ttatacctga aacgtcattc
    12901 ttatccattt gcattaattt ttgagcatct tcgatattaa taaatgccaa tttagtatcg
    12961 aaattaaatc ctgtaccagc agaaaaaaca cctacaacgg taaagcgctt gaatcgaggg
    13021 atcataccgg caggagttac tgttgcttgc gggatcatta tcgtaacctt atccccaatc
    13081 atcactccaa ggctgtccgc aagacctttt ccgagaataa tcccaaaatg tttcagatta
    13141 ctcatattac ctgccagtag tttcttattg agatgagtta ctgattgttc tttctctggc
    13201 aaaataccgg ttagaacgat aggcaaaacc tggccttcat gagttaataa tccttgactt
    13261 ccaacataag gcgcaattgc ctttattcca ggaattgttt caaccttttt aaccacttca
    13321 ggccaatcac ttaatcgctc atcaggacct gttatggtga tttcaggcgc catcccaaaa
    13381 aaacgacgat gaatttcctg atcaaaacca ttcatcactg ataaaacagt gattaaaacc
    13441 atcactccca tgcctatacc caacatggaa cttaaggaaa taaaggaaac aaagtgattt
    13501 ttcttacgtg aacgcgtata acgtaatccg ataaacagag ccaatggttt atacataatc
    13561 gtattcagct ggattaaagt tagtattgta cagtacttat agaaaaggcc aagattgaag
    13621 cctaaagatt ttaaagaact tattaataat tcatcatcag acaacccaca tagttatcca
    13681 cagaatctgt ggataactaa tagctaggat ttcataatca tgtgttttgg ggaaatcctt
    13741 tttaaatagt catctagtag actttgtttt ctcagcaaac gtatctcaat ttttttattc
    13801 aagattacca aactttcctt cataaaaatc gataaaagct tgctgaagct cttcacgagt
    13861 attcataaca aaaggtccat gatgagctat aggttctaac aaaggttctg cactcagaac
    13921 caaaagaata gcatttttcc cttcactatt tattttgatt tttcctgcac tcagtgaaaa
    13981 aacgagtaat tgattctcat gtgcgctctg gttttggtta atagtaattt tgccttcaag
    14041 caccaagata gctacattat gatcacttgg tagttctaaa atagcctcac tctgagcaag
    14101 taaacgtata tcaaataaat taattggtgt aaaagttttg gcagggccat gaactccgtc
    14161 ataatttcca gcaataatat ttaataaacc ttgttgattt gaaaaatgat acagccccat
    14221 ttgttgcttg gttaatgctt gataagctgg aggagtgttt ttatagagcg ctggtaaatt
    14281 gacccataat tgtaccattt gtaataaacc accttgtttc gcaaaatgtg ttgcatgata
    14341 ttctttatgt aggattccag cccctgctgt catccattga acatctccag cttctatgat
    14401 tccgtgattt ccatcactat catgatgagc taccgcacct ttataggcaa tagtaaccgt
    14461 ttcaaaacca cgatgtggat gtgggcctac accaagagga ctatctgttg ggggaaaata
    14521 aaatgacgga ttataatcca acaaaacaaa aggatttaat cgtttagcca aatcactatc
    14581 accgggaata aaattaatga ctcgaaaacc atcccctacc atatgagtag ggcctgcctt
    14641 ataaatattt tcgagttctc gatataaact catcgccgac tcctgattat gccatttgaa
    14701 actgtaataa ctgttgtatc tttgcttctg cttgatgtaa ggattgagtg cgaatctctt
    14761 ctccaacatt cactccttct gctcggataa aggtaatatc agatatgcca ataaaattta
    14821 aaattgaagt taaataacgc tcctgatgat caagatttag cgcaggttcc gcattataaa
    14881 aaccaccacg gcttgataat atataagccc tttttcctgt tgctaatcct tgtaccttac
    14941 catccacata tttaaaagtt tttcccgcaa taacaatgcg atcaatccag gattttaatt
    15001 gagagggtat tgaaaaatta tacatagggg ctccgataac tagtacagaa gcacttaata
    15061 attctgagat taattgcatt gataaattca tttcctccct aatttcagca gatatttgtg
    15121 tagatggtac cgaattggca gctaaaattt tttgcgataa atggttaata ggttgggcgt
    15181 gtaaatcacg ataaactact tccgtttcag gataaatctt ttgccatcga ctaacaaaac
    15241 ttcgggttag ctgccgtgaa acagaggtat tagttaatat acttgagtca atagctaata
    15301 at
//
LOCUS       DACVWI010000066        15301 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.066, whole genome shotgun sequence.
ACCESSION   DACVWI010000066 DACVWI010000000
VERSION     DACVWI010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 15301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15301
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.066"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            70..759
                     /gene="def"
                     /locus_tag="JBH85_07490"
     CDS             70..759
                     /gene="def"
                     /locus_tag="JBH85_07490"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HAU0946041.1"
                     /translation="MLLTTLTRTKKKSQQLLILIGFLLGMSPVMALEIITIEKKENYH
                     MLKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQL
                     LRDNAKIFPMHILINPNYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEG
                     NVHQQIENGFYARVLQHEIDHLNGVLITDRLTPDCVQGTIEEMMTIRRAELPVEKRKL
                     FDQIMAKKLKK"
     gene            complement(795..1199)
                     /locus_tag="JBH85_07495"
     CDS             complement(795..1199)
                     /locus_tag="JBH85_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4332 domain-containing protein"
                     /protein_id="HAU0946042.1"
                     /translation="MHKLIELQGVGPKYAEMLKRVGIESQDDLLRVCSGRRGRFRVAE
                     QTGISHKLILKWTNQADLARVNGINEEYAELLEQAGIDSIPELAHCNPEQLYSSLKEK
                     NEQCHLAQHVPGLSQVVTWVEQAKKLPRAVYH"
     gene            1408..1731
                     /locus_tag="JBH85_07500"
     CDS             1408..1731
                     /locus_tag="JBH85_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946043.1"
                     /translation="MVRIFLLTLGLFSSTTINAWYGSGITIGVARANVHYYGDDIRVY
                     DPWGYGYYDRNYYYNGVRNIIVPNVIVPNVVINVPVQRYYVPSCEEMEVCDPYGQCWL
                     EQFCR"
     gene            1934..2980
                     /locus_tag="JBH85_07505"
     CDS             1934..2980
                     /locus_tag="JBH85_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HAU0946044.1"
                     /translation="MSETIGYAAHKAGAPLKPFTFERRPVGAHDVAIDILFCGICHSD
                     LHQVNNDWAGAFYPMVPGHEIIGRVKEVGHQVHRFKAGDLVGVGCMVDSCRQCTYCHQ
                     NEEQYCKSGATYTYNSQDNHLGGVTYGGYSKHIVVTEDFVLKIDESLDPAAAAPLLCA
                     GITTYSPLKRAKVGKMSKVGIVGLGGLGHMAVKLARAMGAYVTVFTTSINKIKAGKDL
                     GAHDVVLSTDSNVMQTLANQYDFILDTVSAKHDLGQYLNLLKVDGQLTQVGLPSDPLE
                     VTMFPVILKRLSINGSLIGGIKETQEVLDFCARHEITADIELIKMHEVNSAYERLLKG
                     DVKYRFVIDMSTLD"
     gene            complement(3034..4353)
                     /locus_tag="JBH85_07510"
     CDS             complement(3034..4353)
                     /locus_tag="JBH85_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAU0946045.1"
                     /translation="MYNILLIFIAFLLVLLNAFFVSAEFGMVKLRATRIQAIKENYGL
                     RGRILEQVHQNLDAYLSACQLGITLASLGLGWIGEPAFAELLGPLFVALGISSVHIVT
                     ISSFFIAFFLISFLHIVIGELMPKSIAIRQSELISVWTAVPLYWFYWIMYPAIWFLNT
                     CSNFFLKLSGMDIKNEYEGFYSSEELKLILSGQHLQSELKEDEREILEHTLDLAELNV
                     TEVMRPEDEMIIIDINEPFETIKDKILKYRYSRYPVYDSGTKEMIGVIHVKDLFADLL
                     LQKNINTLKPYVRPVLKVSHKLPAMDLLRKFRAGMPHFALVYKHKSSLLGFVTLDNLL
                     HILIGRIKDEFHKTHEDWVKNLDGTITTKGDCSLYSLERALDCDITLSPDEEELNTLY
                     GLIITRHGKLPNEGEIIQFVEFDALIEKVQDSFITKIKVFPKIKNQE"
     gene            5007..6302
                     /locus_tag="JBH85_07515"
     CDS             5007..6302
                     /locus_tag="JBH85_07515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946046.1"
                     /translation="MNQNCFKPKNNFVSLAMWTLPLSFFTFQFLLRLWPGLTMQDIMA
                     QFSIDAASFGLIAAFYYYGYAGMQIPVALLLDKFGARFVVFAFAMLCGIGTLVFIGTN
                     NFYLALSGRFLIGVGSAAGFLGVSKVVSEWFSHSQYSRMIGFSFSVGLLGAIYGGKPL
                     AHLIQNFSGQQVGLALAVFSILLGCCALFILRSPPNNTHSVTKTMNLSHCSFLFSSWI
                     IWALALANLLMVGALEGFADVWGVPYLIAKYALNKTDAAFLISFIFMGMIFGGPLLAF
                     LSQKLGNYFVIALCGAGLAFLFLILLYTSTLHWWQLGTLFFAIGLLCCYQVIVFAAGS
                     TLVPYEGLGVTIAFLNCINMLGGSFFHTLIGKLMNGSWSGQMSANGLKLYEIESYQWA
                     LSLIPFCALCGSLLIVLIHIKTRAYAAPGFMKKTSLTGV"
     gene            6305..6949
                     /locus_tag="JBH85_07520"
     CDS             6305..6949
                     /locus_tag="JBH85_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanyl-tRNA editing protein"
                     /protein_id="HAU0946047.1"
                     /translation="MEKIFWSNPYQHTLDTKIISINGNEILLEKTIAFSFSGGQESDR
                     AFINGLEVLSSRIDGNLIYYTLPDDHNLAPNDVITMTIDWPRRYRLMRLHFAAELILE
                     LVTRTSMLEKVGAHISESKARIDFKANFNISTIFSQLLDEYNAIIRQDLVIHKGYHDV
                     TNQRRFWKIDGFAEVPCGGTHVHSTSEVGFIRLKRSHPGKAIERIEITLMDDSR"
     gene            7196..8110
                     /locus_tag="JBH85_07525"
     CDS             7196..8110
                     /locus_tag="JBH85_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HAU0946048.1"
                     /translation="MELPNHFSTVYVSKPEFIETLSEELGEVSNKIGSLVFSPHQKLD
                     VCFALDVWLEPEIVTFQSISEAAKILRQAGKFWYLHPVTEIRRSRLIEEQLRKCPSLM
                     SHFPVTNDIPSIGVFSLLDRNTLLFSAKRLKKWPDGQCYFIEDKANPPNRAYLKLWEA
                     LFLLNKYPCPGETVLDLGASPGGWTYVMQSLGTQVTSVDKAELDTKIMALPRVSFLKQ
                     SAFALDPEQFTESYDWVLSDVACYPDRAYTLIKKWIASKKARQLIFTIKLQGQTDLNT
                     IKRFQSIPNSKVINLFYNKHEVTFFYPV"
     gene            complement(8183..9136)
                     /gene="epmA"
                     /locus_tag="JBH85_07530"
     CDS             complement(8183..9136)
                     /gene="epmA"
                     /locus_tag="JBH85_07530"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HAU0946049.1"
                     /translation="MSDNSWLPSASIQLLRARAELIGKIRQFFTERQYLEVETPVMAR
                     HGVTDVYLSNIKAIFRGETCYLQTSPEYHMKRLLAAGSGPIFQLARVFRDDELGRWHN
                     PEFTLLEWYQLDINHHILMDEVDLLLQIILKSRPMIRKTYQQAFEEACGIDPFSTSIE
                     QFTKILAQHGLDGVLSSHEQDRDQYLFLLMSHVVEPFLAEESTPVAVYHFPASQAALA
                     QVKEGVAERFEVYYQGVELANGFHELTDVEAQKKRFMLDQQHRKQKGLTAMEADAYLL
                     EALEHGLPPCSGVALGVDRLLALALKQPSIEKILSFDFSRS"
     gene            complement(9139..9474)
                     /locus_tag="JBH85_07535"
     CDS             complement(9139..9474)
                     /locus_tag="JBH85_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003634662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly protein"
                     /protein_id="HAU0946050.1"
                     /translation="MFGFKKKQSNESIKEGVITALRGVFDPEIPVNIYDLGLIYDIAV
                     NDEGHVHIQMTLTTPGCPVAQTFPGTVEQAVNQVEGVSDCTVELVWEPPWSQDRMTEA
                     ARLELGIFY"
     gene            complement(9546..9995)
                     /locus_tag="JBH85_07540"
     CDS             complement(9546..9995)
                     /locus_tag="JBH85_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HAU0946051.1"
                     /translation="MSMELRELYQEIIIDHNRNPRNHHVMEDATTEAKGFNPLCGDKL
                     TVYLKLQGDLIRDVSFVGCGCAISQASASLMTDALKGKSIKEAHELFHRVHRMLTQEE
                     EDSLVSMDKLTVLAGVKAFPARVKCATLAWHTLEAALNKETEVVKTE"
     gene            complement(9992..11236)
                     /gene="sufS"
                     /locus_tag="JBH85_07545"
     CDS             complement(9992..11236)
                     /gene="sufS"
                     /locus_tag="JBH85_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufS family cysteine desulfurase"
                     /protein_id="HAU0946052.1"
                     /translation="MSTNPSLMTSFDVNKIRKDFPVLHQKINEYDLVYFDNAATTQKP
                     KAVIDAIAQFYEKDNSNVHRGVHALSVRATEMYEAARAKVKRFINARSPRECIFVRGT
                     TEAINLVAQSLVAPRILPDEEILITHMEHHSNIVPWQMVCKKMGCKLQVAPISLNGEV
                     ILEEFERKLNENTKMVAINYASNSLGTINPVKTMIKMAHEVGAKVLLDGAQATAHLIV
                     DVQDLDCDFYAFSGHKMYGPTGIGVLWGKEELLNSMTPYQGGGEMINSVSFEATEYAA
                     IPHKFEAGTPNIAGAIGLAAAIDYIWSLDLDAIAEYETQLLNYATKAIEAVKGYNIIG
                     TAANKVPIISFVHGKIHAHDIGTILDSEGIAIRSGHHCTMPLMDFYDVAATSRISMSF
                     YNTFKEIDYCMEALQRVKEVFA"
     gene            complement(11226..12512)
                     /gene="sufD"
                     /locus_tag="JBH85_07550"
     CDS             complement(11226..12512)
                     /gene="sufD"
                     /locus_tag="JBH85_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HAU0946053.1"
                     /translation="MSDILDYYQQQAQSGVSQIPWLAQLQSKALTDLKRRGFPTRYDE
                     EWKYTLVDSLLQQHFVLPDPTVKPALKAVFYDSPVKNLFLIQNGFISQEQEWIKNLPE
                     GVLILPLSLALIHYADLVKPYLGKIVEQEHGFHYLNTAMLQCGVFIYIPAGICLEEPI
                     VLKHIQDQTNQAMYLRHLILMEKESQATLIEEYQGEENICYFTNSITEVFLGAGAKLN
                     HYKIQKESKSAYHLGHLSIRQSAASQFSSHSLSLGGKLVRSDISVFMQEEQAQCLMNG
                     IYAPGDGQHIDHHTVVHHLVPNCRSDQDYKGILTGHSRAVFNGKVIVAKNAQHTDAKQ
                     QNKNLLLSANAEVDTKPQLEIFADDVLCSHGATVGQLDEEAIFYLATRGISRDEASHY
                     LIQAFANDNLRLIPNRDLADWMGNLLTQQLGYANEY"
     gene            complement(12509..13261)
                     /gene="sufC"
                     /locus_tag="JBH85_07555"
     CDS             complement(12509..13261)
                     /gene="sufC"
                     /locus_tag="JBH85_07555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HAU0946054.1"
                     /translation="MLNIKELNVAVNGQSILKGINLEVKPGEVHAIMGPNGSGKSTLS
                     KVLAGHPSYEITRGDISYLGQDLLPMSPEERARAGIFMSFQYPVEIPGVTNINFLKAS
                     VNAVRKGQGRNTLDAIEFLSFIREKCQLLDMDESFLYRSINEGFSGGEKKRNEILQMA
                     ALEPRLAILDETDSGLDIDALRIISQGVNAMRSPERSIILVTHYQRLLDYIEPDFIHV
                     LANGRIITSGDKSLALELEKKGYSWLEEVEQL"
     gene            complement(13263..14711)
                     /gene="sufB"
                     /locus_tag="JBH85_07560"
     CDS             complement(13263..14711)
                     /gene="sufB"
                     /locus_tag="JBH85_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HAU0946055.1"
                     /translation="MAKSSEQLNSLLDREYQHGFITDIEVETFPPGLDEDVIRRLSAI
                     KGEPEFLLEWRLKAFRHWLTMPHPEWSSVHYLPIDYQSISYYSAPKSKKDAPKSLDEV
                     DPELLKTYEKLGIPLREQEMLAGVAVDAVFDSVSVATTFKAKLAEKGVIFCPLSEAVH
                     QYPDLVKKYLGSVVPYRDNFYAALNSAVFSDGSFVYVPKGVRCPMELSTYFRINAAST
                     GQFERTLIVADVDSYVSYLEGCTAPMRDENQLHAAVVELIALDGAQIKYSTVQNWYPG
                     DKEGKGGIYNFVTKRGACRGKKSKISWTQIETGSAITWKYPSVILQGDDSVGEFYSVA
                     LTNNFQQADTGTKMIHLGKNTRSTIISKGISAGCAHNAYRGLVRIAPTATNARNYTQC
                     DSMLMGSQCSAHTFPYIEVKNPTAQVEHEATTSKISEEQLFYCQQRGIDTEDAVSMIV
                     NGFCKQVLKELPMEFAVEATKLLGISLEGAVG"
     gene            complement(14704..15165)
                     /locus_tag="JBH85_07565"
     CDS             complement(14704..15165)
                     /locus_tag="JBH85_07565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly regulator"
                     /protein_id="HAU0946056.1"
                     /translation="MLRVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSK
                     ILKRLTSAGLLTSVRGVSGGYRLQRPAAEISVSQIIFALEEHRGFTECSMQPNDCFLQ
                     GVCTIQGNWRLISHAIETALDSVSLEALAKPTLPTRDVERVRQLASGVNRG"
BASE COUNT         4618 a         3268 c         2830 g         4585 t
ORIGIN      
        1 aactttttta acaaagagat tgaggttttt cgtgagcact gatagttttt tgtccaatta
       61 ggaaaatcat tgctactaac cacattaacg agaaccaaaa agaaatctca acaacttctt
      121 attttaatag gcttcttatt agggatgtca ccagtcatgg ctttagaaat tattacaata
      181 gaaaaaaaag aaaactacca tatgctaaaa actcgggctg aaaatattca atttcccttg
      241 aatcgagaag ataaagattt aatagaagcg atgaaaaaaa aattatacgc attgggaggg
      301 gttggtttgg cagcaccaca agtcaattcc gccaaacaaa ttatcgcagt ttacatccct
      361 gaagaagctc agcttttacg tgataatgcg aaaatctttc caatgcacat cctaatcaat
      421 ccaaattacg agcccctgcc ccacactcgt attattagcg actttgaagg ttgttattct
      481 gtatccagta aagcagggaa agtgccaaga tatgatgaaa ttcagctaaa gtactatgat
      541 gaagaaggga atgttcacca acaaatcgaa aatggctttt acgcccgtgt tttgcaacat
      601 gaaattgatc atctgaatgg cgtattaatc accgatcgtt taactcccga ttgtgtacaa
      661 gggactattg aagaaatgat gactattcgc cgtgctgaat tgcctgtaga aaaacgaaaa
      721 ttatttgatc aaatcatggc aaaaaaactt aaaaaataag gtcgagttcc caaattatct
      781 tttatgaatt gacttcaatg ataaactgcc ctgggtaatt tttttgcttg ttcaacccag
      841 gtaacaactt gagataatcc aggtacatgt tgcgccaaat gacattgctc atttttctct
      901 tttaatgagc tataaagttg ttcaggattg caatgtgcta attctgggat tgagtcaata
      961 ccagcctgtt ccagaagctc agcatattct tcattaatgc catttactcg cgcaagatca
     1021 gcttgattgg tccatttcaa aatcaattta tgactgattc ccgtttgctc ggctactcta
     1081 aaacgcccac ggcgaccact acaaactctt aataaatcgt cctggctttc aatccctact
     1141 cgctttaaca tttcagcata ttttgggcct acgccttgca gctcaattaa cttgtgcatt
     1201 ttatttccag tcttctacta cgatattaca tatataaaat tatagaatat aatgattaat
     1261 tattaaccaa aaacaaatgt tgaaaaaatt taggcctcac gtattaaaaa aaatcaattc
     1321 atttggcaaa atgaaacaat ttcattatga taattacttt cctttcagtc cctggtgagg
     1381 tagaaaatgc gcaagcacaa gaacaaaatg gtcaggatat ttttattgac tttaggacta
     1441 ttttccagca ccaccattaa tgcttggtat ggctcaggga taaccattgg tgttgccaga
     1501 gcgaatgttc actattacgg agatgatatc cgagtatatg acccgtgggg ctatggatac
     1561 tacgatagaa attattacta taatggagta agaaacatta tcgttcctaa tgtaattgtg
     1621 ccgaatgtag tgatcaatgt accagttcaa aggtattatg taccctcatg tgaggaaatg
     1681 gaagtttgtg atccttatgg acaatgttgg ttagagcaat tttgcagata aattaataac
     1741 tcaatcaact aatgttttgg gactcagccc attatgggat gagatattag caggacttac
     1801 aaaaatccca agttcaagac aaacaatgct tttaatgagg gagtttagat aaactaaaca
     1861 accgaattaa aaacattttc taacaaagag attgggaggg tatgtcctga ttataatttt
     1921 ttaaggacaa aaaatgtcag aaactattgg ttatgccgcc cacaaagcgg gagccccttt
     1981 aaaacctttc acttttgaac gccgccctgt tggtgcacac gacgtagcaa ttgatattct
     2041 attttgtggt atctgtcatt ccgatttgca tcaagtcaat aatgattggg caggagcgtt
     2101 ctatcctatg gttcctggac atgaaatcat tggacgagtc aaggaggtag gacatcaagt
     2161 ccaccggttc aaagcaggag atttagtggg cgttggctgt atggttgact cctgccgtca
     2221 atgcacctat tgccatcaga atgaagaaca atattgtaaa tccggggcaa cctacaccta
     2281 taatagtcaa gacaatcatc tgggaggggt gacctacggg ggatattcca agcatattgt
     2341 cgtcacggaa gattttgtat taaaaattga tgaatcactt gatcctgccg ccgctgcacc
     2401 attgctctgt gccggaataa ccacttactc cccattgaaa agggctaaag taggtaaaat
     2461 gagtaaagta ggaatcgttg gcctgggtgg cttaggacat atggctgtca aattagcccg
     2521 tgccatgggg gcttatgtga ctgtatttac cacttctata aacaagataa aagcaggtaa
     2581 agatttggga gctcatgatg ttgtcttgtc tactgacagc aatgtcatgc aaacactagc
     2641 caatcaatat gattttattc ttgatactgt ttctgccaaa catgatcttg gccaatattt
     2701 aaaccttctt aaagtggatg gacaactaac ccaggttggg cttccatcag atccacttga
     2761 agttaccatg tttcctgtta ttttaaaaag actgagcatt aacggctcat tgattggcgg
     2821 cattaaagag acacaagaag ttttggattt ttgcgccagg catgagatca ccgcagacat
     2881 tgaattaata aaaatgcatg aagtaaattc tgcctatgaa agactgctaa aaggagatgt
     2941 gaaatatcga tttgttatcg atatgtcaac cttggattaa atgaaccagg tataaaaggc
     3001 ttccagttgg ccttttatac cacggagcaa atattattcc tggtttttga tcttggggaa
     3061 aactttaatt ttggttataa aagaatcctg taccttttca atcaaggcat caaattcaac
     3121 aaattgaatt atttcacctt cattgggcaa ttttccgtgg cgcgtgataa taagtccata
     3181 tagtgtattc agttcttctt catctggcga taaagtaata tcgcaatcaa gagccctttc
     3241 taaagaataa agggagcaat ctccttttgt cgttatagtt ccgtccaaat tttttaccca
     3301 atcttcatgt gttttatgaa actcgtcttt aatccgccca atcaggatat ggagcaaatt
     3361 atccagagtt acaaatccaa gtaaactcga tttgtgtttg tataccaaag caaaatgagg
     3421 catacctgct cgaaatttac gcagtaaatc catagcaggt aatttatgac tgactttaag
     3481 tactggccgt acataaggct ttaatgtatt gatatttttc tggagcaaca aatcggcaaa
     3541 taaatcctta acatggatga caccaatcat ttccttagtc ccggaatcat agacaggata
     3601 acgactataa cgatatttta aaattttatc tttaatcgtt tcgaatggct cattgatatc
     3661 tattatgatc atttcatctt cagggcgcat tacctcagtg acatttaact cagccaaatc
     3721 gagagtatgc tcgagaattt cacgttcatc ctcttttaat tccgattgca gatgctgccc
     3781 gcttaaaatt aatttaagtt cctcacttga ataaaaacct tcgtattcgt tttttatatc
     3841 catgccggac agtttgagaa aaaaattgga acaggtattt aaaaaccaaa tagcaggata
     3901 cattatccag taaaaccaat acaacgggac tgcagtccat actgaaatca attcagattg
     3961 ccgaatagca atggacttgg gcatgagctc accgattaca atatgtagaa aagaaataag
     4021 aaaaaatgca ataaaaaaag aagatatagt aacaatatga accgatgaaa tacccaaagc
     4081 aacaaataat ggtcccaata actccgcaaa agcaggctct ccaatccaac ccaatcctaa
     4141 cgaagcaaga gtaatgccta actgacatgc tgataaatac gcatccagat tttgatggac
     4201 ttgctcaaga atgcgacctc ttagcccgta attttctttg atggcttgaa ttctcgtagc
     4261 cctgagttta accatcccaa attcggcgga tacaaaaaat gcgttgagaa gcaccagcag
     4321 gaatgctata aaaattaaca gaatgttata cattaaaaat agtccggttt atgatttaat
     4381 ttcacagaac ttacgaaaaa ccccaatctc ttcgttaaaa atatttataa ttcggtcatt
     4441 tggtttatat aaaatccctc attaaaaata ttttttgcct tgaccttgtg gtttttcgta
     4501 agtcctgttt tctattcagt cgtaccttca ctaaaaacat tcactctcta caaatgtgat
     4561 cgaatccttt atgttaatag aatatcgccg tcctggcgag tttaaaataa ctaagccaga
     4621 actcaaagat acaataatta ttatccggtt taatgacaaa ttatttaatc aaagcaaccg
     4681 tatataaatg acaccaaata cccgtaaatg gcggccccct attgacaaat agaagcacaa
     4741 tttgttaatt tgattcatta aaagacaaaa ttaactcaac ctgaaaagat tatgaatcgt
     4801 ccaaacagca aaacatgcca agacttttgt gcaaattctt atgccaatgt tttgctttgc
     4861 ggcgcttccc agtctataga taatctttca atcattatta ttatcttgcc ctctttcccc
     4921 tagagcggtc agctgttgct aattctctgc ctctctaggg aggcatccaa agagttagca
     4981 ccaactgatt tcaactcgag ggcatcatga atcaaaattg tttcaaacca aagaataatt
     5041 tcgtctcatt ggcgatgtgg acattacctt tatctttttt tacttttcaa ttcttattac
     5101 gtctttggcc tggattaacc atgcaagaca ttatggcgca attttcaatt gatgccgcaa
     5161 gctttggcct tatcgctgca ttctattatt atggatacgc aggaatgcaa atccctgtag
     5221 ccttactgct ggataaattt ggagcccgct tcgttgtatt tgcctttgca atgttgtgtg
     5281 gtattggaac tttagttttc ataggtacca ataattttta cttggctctg tcaggcaggt
     5341 ttttgatagg tgtaggctcc gcagctggtt ttcttggcgt atccaaagtc gtatcagagt
     5401 ggttcagcca ttcacagtac tccagaatga tcggtttctc ctttagcgta ggcttgttgg
     5461 gggcgatcta tggaggaaag ccgcttgccc acttgataca gaattttagt ggacaacaag
     5521 ttggtttggc tttggcggtt ttctccatcc tcttaggatg ttgcgcgctt tttatcttgc
     5581 gctctccccc aaataatact cactcagtaa caaaaacaat gaatttgtct cactgttcct
     5641 ttttattttc atcgtggatt atctgggctc ttgctcttgc taatttatta atggtcggtg
     5701 ccctggaggg attcgcggac gtatggggag taccttatct tatcgccaaa tacgcgctga
     5761 acaaaactga tgctgccttt ctcatctcgt ttatctttat gggaatgata tttggcggtc
     5821 ctttactcgc tttcctcagt caaaaattag gaaactattt tgtaatagcc ctctgtggtg
     5881 ctggtttggc cttcttgttc ctaatccttc tttacacctc tacccttcac tggtggcagc
     5941 tgggcaccct cttctttgca atcggcctgc tgtgttgcta tcaagttatt gtattcgccg
     6001 caggttctac tttggttcct tatgaaggtt taggcgtcac aatcgccttc ttgaattgca
     6061 tcaatatgtt aggcgggtct ttttttcata ctttgattgg taaattaatg aatggcagtt
     6121 ggagcgggca aatgagcgct aatggactta aattatatga aatcgaatcg tatcaatggg
     6181 ctttgtcact cattccattc tgtgccttat gtggcagttt gcttattgta ttaattcata
     6241 tcaaaacaag agcttatgca gctccaggat ttatgaaaaa gacttcattg acaggagtgt
     6301 agctatggaa aaaatttttt ggtctaatcc ctaccagcat acactcgata ccaagataat
     6361 ctcgattaat ggcaacgaga ttctattaga aaaaaccatc gcgttttcat tttcaggagg
     6421 acaggaaagc gatagagcat tcatcaatgg ccttgaagta ctcagttcac gaatagatgg
     6481 aaatcttatt tattataccc tgcctgatga ccataatctt gcgcccaatg atgtaatcac
     6541 catgactata gattggcctc gaagataccg gctgatgcgt cttcattttg cagcagaact
     6601 gattctggaa cttgtaacca gaaccagtat gcttgaaaaa gtaggagctc acatctcgga
     6661 atccaaggct cgaatagact ttaaggcgaa ttttaatatc tctactattt ttagccagct
     6721 gcttgatgaa tataatgcca tcattagaca agatcttgtt atccataaag gctaccatga
     6781 tgtgacaaat caacgtcggt tttggaaaat tgacggtttt gctgaagtcc cttgtggggg
     6841 aacacatgtt cattccactt cagaagtggg ttttattcgt ctcaaacgct cgcatcctgg
     6901 caaagctatt gaacgcattg aaataaccct gatggatgat agtagataat gcacctcaca
     6961 gataagctga ttgttttgct ttggggcaag gtgagaatgt tatggggcac ggagtttata
     7021 tacattgaat gagcgttgct gaaacgttct gatcgtgaca gtaaaataaa taaagcgggt
     7081 tattcaggaa gccaggtcaa acgctaatcg agacaaaaat atagaaaaag aatacaaaat
     7141 cgcctaaatt acagcatttg actttgtcgc cattaacctg cgagcgttat ttatcatgga
     7201 actgcccaat catttctcta ctgtctatgt gtcaaaacca gaatttatag aaacactttc
     7261 tgaggagtta ggcgaggtat ccaataaaat aggctctctc gttttttctc ctcatcagaa
     7321 gcttgatgtt tgttttgcac tggatgtatg gcttgaacct gagatagtaa cctttcaatc
     7381 gatttcagaa gcagcaaaaa tattgaggca agccggaaaa ttctggtatt tacaccctgt
     7441 tactgaaatt cgccggtcgc gcttgattga ggaacaactt cgcaagtgcc catcactaat
     7501 gtcccatttt ccagttacaa atgacattcc atcaataggt gtatttagtc ttcttgatag
     7561 aaacactcta ctctttagcg ccaaacgact aaaaaaatgg ccggatggac aatgttattt
     7621 tattgaagac aaagccaatc ccccaaaccg ggcgtattta aaattatggg aagccttgtt
     7681 cttgttaaat aaataccctt gccccggtga aacagtttta gatttaggcg catccccggg
     7741 aggttggaca tatgtgatgc aatcactcgg aacccaagtc acttcggtcg acaaagcaga
     7801 actggataca aaaatcatgg cgcttcccag agtcagtttt ttaaagcaaa gcgcctttgc
     7861 cctagatccc gaacaattca cagagtctta tgactgggta ctttccgatg ttgcctgcta
     7921 tcctgacaga gcctacaccc tcatcaaaaa atggatagca tcaaaaaaag caagacagtt
     7981 gatttttacc atcaaactac agggacaaac tgacttaaac acaatcaaac gatttcaatc
     8041 catacctaat tccaaagtaa tcaatctgtt ttataacaaa catgaagtca cgttttttta
     8101 tccagtataa acataaccag gatttagtga ttatgtctgc aaaaatatca taatgacaag
     8161 ctaatactta attttctatg acttaagacc ttgaaaaatc aaatgaaaga attttttcta
     8221 tgcttggttg ttttaaggcg agcgccaaca atcgatcaac cccaagagcc accccgctgc
     8281 aaggtggtaa cccatgttcc agggcttcca aaaggtaggc atcggcttcc attgccgtca
     8341 atcccttttg ctttctatgt tgctgatcca gcataaaacg ctttttttgc gcctcgacat
     8401 cagtcaactc atgaaaacca ttagccaatt caactccctg atagtacact tcaaagcgct
     8461 cagccacgcc ctcttttact tgtgccaagg cagcctggga ggcagggaag tgatacacag
     8521 caacgggggt tgattcttct gccaaaaaag gctccacgac atgactcatt aataaaaaca
     8581 gatattgatc cctgtcttgt tcgtgagaag ataagacacc atccaaacca tgctgtgcta
     8641 atatcttggt gaattgttct atggatgtag aaaaagggtc aataccgcaa gcctcttcaa
     8701 aagcctgttg ataggttttt ctgatcatag gccgggattt aagaataatt tgtaataata
     8761 aatccacttc atccatcaaa atatggtgat tgatatctaa ttgataccat tcaagtaaag
     8821 taaattccgg attatgccaa cgccctaact cgtcatcgcg aaaaactcgc gctaattgaa
     8881 aaataggccc gctgccagca gctaacagcc gtttcatatg gtattccggg gaagtttgta
     8941 aatagcatgt ttcacctctg aaaatcgctt tgatattgct caggtaaaca tctgtaaccc
     9001 catgccgcgc catcacaggg gtttccactt ccagatattg gcgctcagta aaaaattgac
     9061 ggattttacc tattagctcg gctcgcgcac gtaataattg aattgaagca gagggcaacc
     9121 aggagttatc agacatgatc aataaaatat tcccaactcc aagcgggcag cctctgtcat
     9181 gcggtcctga gaccagggcg gctcccacac cagctcaaca gtgcaatcac tgactccttc
     9241 aacctgattg actgcctgct ccaccgtacc aggaaaggtt tgcgccacag ggcaccccgg
     9301 ggtcgttagc gtcatctgaa tatgaacatg gccttcgtca ttaacagcaa tgtcataaat
     9361 caagcccaga tcataaatat tgaccggaat ttcgggatca aaaactcccc tcaacgcagt
     9421 aataacgcct tcctttattg attcgttact ctgttttttc ttaaaaccaa acatgagctg
     9481 cctctggtct attttccaat atacagacaa actctttcac gagccctgcc actattgcca
     9541 taacattatt ctgttttcac tacttctgtt tctttgttta aagccgcttc caaagtatgc
     9601 cacgccaaag tggcgcattt tacacgcgca gggaatgctt taactccagc aagaactgtt
     9661 aatttatcca tggaaaccaa agaatcttct tcctcttgtg ttagcattcg atgaacacga
     9721 tgaaatagct catgagcttc tttaattgat ttacccttta acgcatcagt cattaacgat
     9781 gcagaagctt gtgagatagc acagccacat ccaacaaaac tcacatcacg aatcaaatca
     9841 ccctgcaatt taaggtaaac agtcagttta tccccgcata aagggttaaa ccctttcgcc
     9901 tcggtagtcg catcctccat cacatgatgg ttacgaggat tacgattgtg atcgatgatg
     9961 atttcctggt aaagttcccg caactccata ctcatgcgaa tacctcttta actcgttgta
    10021 aggcttccat acaataatca atttctttaa acgtattata aaaggacatg gaaatacgag
    10081 aggtcgcagc aacatcgtag aaatccatca aaggcatagt gcagtgatgt ccgctgcgta
    10141 ttgctatacc ttcactatcc agaatagttc caatgtcatg ggcatgaatt tttccgtgga
    10201 caaaagagat aatgggtact ttgttggcag ccgttccaat aatattgtac ccttttactg
    10261 cttcaatagc cttggtagca tagtttaaca attgtgtttc gtattcagct atcgcatcca
    10321 aatccaatga ccaaatataa tcaattgcag cagccaaacc aatagcccct gcaatattcg
    10381 gggtgcctgc ttcaaattta tgggggatag ccgcatattc tgttgcctca aaactcacgg
    10441 agttgatcat ttcgcccccg ccctgataag gagtcatgct atttaataat tcttcttttc
    10501 cccataaaac acctattcca gtggggccat acattttatg tccggaaaaa gcatagaaat
    10561 cgcaatccag atcctgaacg tccacaatca ggtgagccgt tgcctgtgcc ccatccagta
    10621 acactttagc ccctacttca tgtgccatct taatcattgt tttaacagga ttaatagttc
    10681 ctaaagaatt ggaggcgtaa ttaatcgcaa ccattttagt gttttcattt aactttcttt
    10741 caaactcttc aagtattacc tcgccattta aagaaatagg ggcaacttgc agcttgcaac
    10801 ccattttctt acagaccatt tgccagggaa ctatattgga atgatgttcc atatgcgtta
    10861 tcaaaatttc ttcatccggt aatatgcgag gagctacgag actctgggct actaagttaa
    10921 tggcttctgt cgtaccgcgc acaaaaatac attctctcgg tgatctggca ttaataaatc
    10981 gttttacttt cgctcttgct gcctcataca tttccgtagc cctgacactc aaggcatgaa
    11041 ctccacgatg tacgttggaa ttatcctttt cataaaattg agcaatagca tcaatcacag
    11101 ccttgggttt ttgagtagta gccgcgttat caaaatacac caaatcatac tcattgattt
    11161 tctgatgcaa tacagggaaa tctttcctga ttttgttgac atcaaaggat gtcattaatg
    11221 aaggattagt actcatttgc gtaccccaac tgttgagtta ataaattacc catccaatca
    11281 gccaaatcac gatttggaat aaggcgcaaa ttatcattgg caaatgcctg gatcaaataa
    11341 tgagaagctt catcccggct aataccacgt gttgccaggt aaaatattgc ctcttcatcc
    11401 agttgcccaa ccgtagcgcc atgtgaacat aacacgtcat cggcgaaaat ctctaattgc
    11461 ggtttggtat caacttcagc atttgcggag agaagtaaat ttttattttg ttgcttggca
    11521 tcagtatgtt gcgcattctt ggctacaata accttgccat taaataccgc tctggaatgt
    11581 cctgttaaaa ttcctttgta atcttgatcg cttcggcagt taggcactaa atgatgaact
    11641 acagtatgat gatctatgtg ttgcccatcc cccggcgcat aaattccatt cataaggcat
    11701 tgagcctgtt cttcctgcat gaacacgcta atatcactgc gtaccaactt cccacccaaa
    11761 cttaaagagt ggctggaaaa ttgactggcg gcagattgcc taattgataa atgacctaaa
    11821 tggtaagctg atttactttc tttttgaatt ttataatgat taagttttgc tcctgctcca
    11881 agaaacactt cagtaatact gttagtgaaa tagcaaatgt tttcttcgcc ttgatattct
    11941 tcaatcagag tagcctgaga ttctttttcc ataaggatca gatgccttaa atacatagcc
    12001 tggttcgttt gatcctggat atgctttaaa acaatgggtt cttccaaaca aattcccgca
    12061 ggaatataaa taaagactcc gcattggagc atggctgtat ttagataatg aaacccatgc
    12121 tcctgctcta caatttttcc aaggtaaggc ttaaccaaat cagcataatg tattaaagca
    12181 agagataaag gcagaattaa cacgccttca ggcagattct taatccattc ttgctcttgg
    12241 gaaataaatc cattctgtat taaaaacagg tttttgactg gtgaatcgta aaagacggct
    12301 ttaagagcag gctttactgt aggatcaggt agtacaaaat gttgctgtaa tagtgagtca
    12361 acgagagtgt acttccattc ctcatcatat cgggtgggaa aaccacggcg cttcaaatca
    12421 gttaatgctt tagactgcaa ctgcgcaagc cagggtattt gcgatacacc tgattgggct
    12481 tgctgttgat aataatccaa aatatcactc ataactgctc cacttcttca agccagctat
    12541 aacctttttt ctccagttcc agcgccaaag atttatcccc tgacgtaata atacgaccat
    12601 ttgccaagac atgaataaaa tcaggctcaa tataatccag taagcgctga taatgggtaa
    12661 ctaaaataat agaacgctcg ggagagcgca tcgcattaac tccttgagaa ataattcgta
    12721 atgcgtcgat atccagaccc gagtcggttt catcaagaat agctagcctg ggctccaaag
    12781 cagccatttg caatatttca ttacgtttct tttccccacc tgaaaatcct tcattaatac
    12841 ttcggtataa aaagctttca tccatatcca gaagctgaca tttttcccga ataaaactta
    12901 aaaactctat ggcatcaagg gtgtttcttc cttgtccttt gcgaaccgca ttcactgagg
    12961 ctttaagaaa attgatattg gttacaccag gaatttctac cggatattga aaagacataa
    13021 aaataccggc ccgcgctctc tcttccgggg acataggcaa caaatcttgt cccaaatagg
    13081 atatatcacc acgagttatt tcataagaag gatgcccagc caataccttg gagagagtac
    13141 tttttcctga accattaggt cccataatcg catgaacctc tcctggttta acctcaagat
    13201 taataccttt taaaatagac tgtccattga cagcaacatt gagttcttta atgtttaaca
    13261 tattagccga ctgccccttc taagcttata cctaataatt tagtggcttc caccgcaaat
    13321 tccataggta attcttttaa aacttgctta caaaatccat tcacgatcat agaaacggca
    13381 tcttctgtat cgataccgcg ttgctggcaa taaaacaatt gctcttcact aatttttgaa
    13441 gtagtggcct catgctctac ttgtgccgtt ggatttttga cttctatata aggaaaagta
    13501 tgtgctgaac attgactacc cattaacatg gagtcgcatt gggtataatt acgcgcgtta
    13561 gtggctgttg gtgcgatgcg taccaatcct cgataagcat tatgcgcaca cccggcactg
    13621 atccctttcg aaataattgt tgatcgagta tttttcccta aatgaatcat tttcgtacct
    13681 gtgtcggctt gctgaaaatt attggttaag gcaacagaat aaaactcgcc aacagaatca
    13741 tcaccttgta aaatcacact ggggtatttc cacgtaatgg ctgaacctgt ttcaatttgt
    13801 gtccaggaaa ttttcgattt cttaccccga caagctcccc gtttggtcac aaaattgtat
    13861 atccctcctt taccttcttt atcaccagga taccagtttt gtaccgttga atattttatt
    13921 tgagccccat ctaacgcaat caattcaacg actgcggcat gcaactgatt ttcatctctc
    13981 attggggcag tacacccttc caggtaggac acatagctgt caacatcagc aacaataagt
    14041 gttctctcaa attgcccggt agaagcagca ttgatcctga aataggtcga tagctccatg
    14101 ggacatcgga cacctttggg gacataaaca aatgatccat cactaaacac agcagagttc
    14161 aaagcagcat aaaaattatc cctgtaagga acaactgacc ccagatattt cttaaccaag
    14221 tccggatatt gatgtaccgc ttccgataat ggacaaaaaa ttactccttt ttcagctaat
    14281 ttcgctttaa aagtagtcgc aactgaaaca ctgtcaaaca ccgcatcaac cgcaacacct
    14341 gccagcattt cctgttcgcg taaagggata cctaatttct cataagtttt taacaactcc
    14401 ggatcaactt catccagact tttgggagcg tcttttttac ttttaggcgc ggaataatag
    14461 gaaatggact gataatcaat tggaagatag tgcacactcg accattcggg gtgaggcata
    14521 gtgagccagt gccgaaatgc tttcaaccgc cactcaagca aaaattcagg ttcgcctttt
    14581 attgcagaca aacgacgaat gacatcctca tccaatccgg gaggaaaagt ttcaacttct
    14641 atgtcggtta taaaaccatg ttgatattct ctatcgagca gagaatttag ttgctcactg
    14701 cttttagcca cgatttactc cacttgctaa ttgccgaact cgctcaacat cccttgttgg
    14761 aagagttggt tttgccaatg cctccaaact gacactatca agagcagttt cgatcgcatg
    14821 gcttattaat cgccaatttc cttgaatggt acatactccc tgtaaaaaac aatcattggg
    14881 ttgcatactg cattctgtga aacccctgtg ctcttccaaa gcaaatatga tttgagacac
    14941 cgaaatttca gctgctggtc tttgcagtct atatcctccg gatacacctc gtaccgaagt
    15001 taacaaaccc gcgctagtca ggcgttttag tattttacta acagtaggta ctgttaaatg
    15061 cgtatgtaag gcaatatctc gagcattgca taattcctgc gaatgcttgg ctagataaac
    15121 cattacaact gttccataat cggccaattt actgacgcgc agcataacac cccctactcg
    15181 aataatctag taccaaataa gtcttatttt cagatagagg aaaagaatat cttattaaga
    15241 acaaggatta gacaattgct tactgatcca atatcacctg atcctctatg tgagtttttc
    15301 t
//
LOCUS       DACVWI010000067        15058 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.067, whole genome shotgun sequence.
ACCESSION   DACVWI010000067 DACVWI010000000
VERSION     DACVWI010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 15058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15058
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.067"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            381..908
                     /gene="aroK"
                     /locus_tag="JBH85_07570"
     CDS             381..908
                     /gene="aroK"
                     /locus_tag="JBH85_07570"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HAU0946057.1"
                     /translation="MSIVKVRNIFLIGPMGAGKSTIGRALAKELKLEFYDSDEVIEER
                     AGADISWIFDIEGEEGFRRREQKVIDELTQKTNIVLATGGGVVITPENRNALAGRGTV
                     IYLKTSLQQQFERTKRDTKRPLLQTEDLEGRLESLRDEREPFYDELADVSFETDKLTV
                     KAVANNIIKYLYGEV"
     gene            895..2004
                     /locus_tag="JBH85_07575"
     CDS             895..2004
                     /locus_tag="JBH85_07575"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HAU0946058.1"
                     /translation="MAKFELYAEVDVSISGHQYPIIICRNGLIDPELINRFITSKQVL
                     IVTNRTVAPLYLGHLQSVLPSKQCDVVILEDGEEHKNQRSLFTIYDSLIQNKHHRDTS
                     IIALGGGVIGDMAGFAASTYQRGVRFIQLPTTLLAQVDASVGGKTAINHPAGKNMIGS
                     FYQPQAVIIDLNTLKTLPEREFRAGIAEMIKYALLVGGSFFERIQEALQQGLTVHSPE
                     LPLLIAECCQVKAKIVEQDERESGLRALLNLGHTFAHALETYTDYKKWLHGEAVAIGL
                     YCAAVLSEKKGLLDKPIVDQVEKMLIHAGLPHKIPNSIDLIQLRELMSLDKKIKNNCL
                     RFVMIKKPGACYIDDSVTEDCLHNALINVVEGERK"
     gene            2001..3452
                     /locus_tag="JBH85_07580"
     CDS             2001..3452
                     /locus_tag="JBH85_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946059.1"
                     /translation="MIDGKEPLDEGVANQPRTLFKPGAWLAKVDFINHLILFNNVLIT
                     ILSEKEGGKTCFNSLLKSHLNQQIKSVSFKAKPPFDSQDIINEFARQLHLNNKDNNIG
                     SLAAQINERKTHVLLIIDDAHHLPESFIKEVMIIIKNQEDFGFFHLCLISDYSIVATL
                     NNLAVEPFNNLIHTIELGALSETETRTYVLQRAMASHLINRPLTDTQFKQFYHLTKGN
                     LSKINSSLELFLSKCANEKQNNKKAILKRISLVASFAIVAGLSYFYFDNVYKAPDNTP
                     KLPDLASVTTLPPIKDLIKTPTQQAVPKQEAVSYIASWEDSSTRQLVHYGLPKKQILD
                     DFMDEEDTLNTVAIVDKVVVIPKLKAKNISEQVGQAVVSQSKLPPVPDSSQTKLASEQ
                     PDIKKINSKLFTIQLAASHKVEDINRFKNQNKWLAQAKIRHFTNAKGSWYILTIGEYE
                     SRNQALLNIKKLPGELAKLSPWIRSVEGLSNIG"
     gene            3561..3992
                     /locus_tag="JBH85_07585"
     CDS             3561..3992
                     /locus_tag="JBH85_07585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HAU0946060.1"
                     /translation="MYKRVLFATDFDEVGVRAAEKAKKIADENGADLILVHVVEPIPA
                     YAYPGFAGFAEVEMSIREQAEKELNELAEKLGVDEKHRFIEYGSTKNEILRVAKEHKI
                     DLIVTGSHGKHGLSLLLGSTANAILHGAECDVLIVRPKISH"
     gene            4116..5102
                     /gene="ribF"
                     /locus_tag="JBH85_07590"
     CDS             4116..5102
                     /gene="ribF"
                     /locus_tag="JBH85_07590"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HAU0946061.1"
                     /translation="MKLLRGSTHFAIFDKGAVATIGNFDGVHLGHQHLIKTLRAKADE
                     MNLPLVILLFEPQPKEYFHREKAPARLSTLREKIDVLNLCQVDYIYCIKFDARLAQTP
                     ALYFAQFYLFEALKIRYLLVGQDFRFGKSREGDVNLLKTLGANYSCEVTVQSDFLIEN
                     EKISSTRIREALQQGNLRFAAKLLGRPYSMCGRVIKGDGRGRQWGIPTANLGMHRLSI
                     PLQGVYAVQVHINSNVFYGVANIGKRPTVAGTKNILEVHLFDFHGSLYGQLVQVIFLH
                     KLRDEVKFSSVEALITQINSDIILAKAYLKQNWLDSVIDSSNDVANGINNTV"
     gene            5215..8010
                     /gene="ileS"
                     /locus_tag="JBH85_07595"
     CDS             5215..8010
                     /gene="ileS"
                     /locus_tag="JBH85_07595"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HAU0946062.1"
                     /translation="MAEYKDTLNLPNTSFPMKASLSVREPEMLADWQAKGIYQKIRKA
                     RVGSKRFILHDGPPYANGHLHCGHALNKILKDIIIKSKTFSGFDAPFVPGWDCHGLPI
                     ELNVEKKVGKAGSKISPREFRAKCREYAASQIDIQRDEFQRLGVLGDWYNPYVTMDYH
                     YEANIVRALGLMIKNGHLQQGFKPVHWCIDCGSALAEAEVDYEDKTSPSIDVAFSAVN
                     PSEFLNCFGTQPAVKPLILPIWTTTPWTLPANEAVCLHPEIDYALIDAGNSYYIVATD
                     LVESVMARYGISHYKTSGSAKGRVFEHFKLQHPFYKRQVPVVLAEHVTTESGTGCVHT
                     APAHGPDDYLVGQSYQLPLINPVMANGCFAENVELFAGISVLKANETILTVLSERNVL
                     LASESIRHSYPHCWRHKSPMIFLATPQWFVSMDKSNLRQAIINEIDKVNWVPDWGKAR
                     ISNMVENRPDWCISRQRSWGTPMPLFVHKTTRELHPDTLELIEKVAVMIEKSGIDAWF
                     DLDSSELLGDDAKHYDKITDTMDVWLDSGISHYSVLKHNNDLDFPADVYFEGSDQHRG
                     WFNSSLTTAVAMYGVAAYKTVLTHGYTVDAEGKKLSKSKGNYVALDKLVNQHGADILR
                     LWVASTDYRHEVSISEEIIKRNADAYRRIRNTARFLLANLFDFNPASDCIDAKELLEL
                     DRWALKRCQLLQEEIITAYENYHFHLIYQKIHNFCAVDMGSFYLDLIKDRQYTTAKDS
                     IARRSCQTAMYHMVKAFTIWLAPILSFTAEEIWQTIPGNNSESIFIEHWYDAWPTIDA
                     VNMEDWEQLHIVRDEVNKALEETRQRGEIGSALAAEVTVYADAKALPKLTRLGEELRF
                     LFITSEAKACPISQSPKGLAVTDCGVSIQVTASVHEKCARCWHRREDVGQNQEHPELC
                     LRCVGNISGYHEERLYI"
     gene            8007..8471
                     /locus_tag="JBH85_07600"
     CDS             8007..8471
                     /locus_tag="JBH85_07600"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HAU0946063.1"
                     /translation="MKKWPWLVLSFLVIICDQLSKYWVGVLLTPYKPMPVMPMLNFTL
                     AFNTGAAFSFLSGAGDWHRWFFAGFSFLMSIILLIWLVRTPEQARFQSVGISLILGGA
                     IGNLIDRGLHGYVIDFIDVYYKHHHFATFNLADSAICIGAAILVLDLLIRRE"
     gene            complement(8770..9333)
                     /locus_tag="JBH85_07605"
     CDS             complement(8770..9333)
                     /locus_tag="JBH85_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyphosphooctonate aldolase"
                     /protein_id="HAU0946064.1"
                     /translation="MIIEKILGNQSVIISLDIDNFLFDRLDQIANSDLDLVEINSTDT
                     NLLVKIKTQYPSLKIGAGGIIDTQQLEQCYQAGVHFASSPGFLASIAQTASVYSMCYF
                     PSVATISEAMAAANIGFKQVRPYPANLTFCNALSKYLPGLNLFPAEIDWNEAELFLNL
                     PAVAAVIIHNPDHKQLNGLVRLAQSII"
     gene            complement(9513..11702)
                     /gene="lidA"
                     /locus_tag="JBH85_07610"
     CDS             complement(9513..11702)
                     /gene="lidA"
                     /locus_tag="JBH85_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LidA"
                     /protein_id="HAU0946065.1"
                     /translation="MAKDNKSHQVKTSEGSLESVKTKEKEPVLEKMRVEDSKKEDKLS
                     MPTTKKESQPNEPVKPFKTSFEKWIESSLLDPQAKEDRGSTINLGREGLKNASQVKKF
                     LLSPAGKDVIAELGAQMALQRNINLQNQQDRMEHELFKRRLMAALFLWYLSKKSHAAE
                     KVKEIIREYNEKAIKNAEKASKPSQQSTSSTSQADKEIQKMLDEYEQAIKRAQENIKK
                     GEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDS
                     EKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSL
                     KDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKME
                     ALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRK
                     EKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGE
                     DWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLED
                     NGKEKIEIANNISKLQSTVGVALNQLNQPTLDTESPVLTPSGGSTTSSPKPTPSLASV
                     TTFFKTKIDEMKKNENVKVTFDDLLALSIKIADPKARTYFTGELLKEVPRSGAIPFQT
                     MQRMLQTLEQYGVDTTKPSVTSIRSKTDEVLEQRFNPTPSLSPFKTS"
     gene            complement(11944..>15058)
                     /locus_tag="JBH85_07615"
     CDS             complement(11944..>15058)
                     /locus_tag="JBH85_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946066.1"
                     /translation="ETTDGQTQVIIPLRVTPHTHKAMPTITGSIFSHEAGTVFYGNYN
                     MEYLLPGGDRLRLIANHNKKTVQLMLFTHNPELLKILPGDRPSSLVADVINHINRYKV
                     QAESYKKPLSHEQEEKINLANACIRSLNHLLKKERQLKPHDHAGQEELRRKIISIIEH
                     CQNDNRMIANNPVVSEGSFGYMLYDAHKTAQHYRFNRVFSVSRQDQMDFTKVTKTQLG
                     KPITPCFVWDSEIHIGHSSSELDDALRVICQQYQLCPAPALNNIPANRFAKLERFISK
                     LWHDGHDWINYLAITTKPSHKTEIQKRSDGVSITKITPYYKLKGLPQRGYNSLAAMVN
                     HLVENSAQQTEVSSIKEAKRLLSHLPNGNWVIVPQKNAVLLRLENKLIHLKYFIHDQL
                     FYPLPDGEDLYILSQISKRHLYLPERISLRFKAFISRIPDFFKGFYKSMSQFIIHDLH
                     EEFFNHVHATHAPKQHLSERDQRPKSKKIKRTSLHEALQNHGLLANGQTLEEFISDQI
                     NNSPYVIARANHPPTVHTYENPLHRALGVVRHLAGFFIDTSERNPMIGTLAMAAYVYG
                     AGAVLAPNVLADILKKLHLSGLIYGIEPVQKLAHLMNHGKTSEAISASVTLWQGMVVS
                     GNLDKFFVDAVSVLKEDPAEIAIIVSLALSLGYGLTKAIPSLQHEMGDFPYTNYAALG
                     GKGGAAIYDTIMHPGDDWFLGTCKWFCKNIINIGKLLVAPFFEGFYYGFFDGFINGWK
                     KSGKLIKQLGKQTLAASVDLILAILTIPLLEASSLLIHVPFRGITNFFRKLLSVLGNF
                     SAIGKLLIDIAERPSTNNFISEFTLSPLYGFTSPFGHFSDNPVTNIGINGIRLLFLPL
                     LQLIKNILILPMIDILSLTIRINLSIINPISRLLAYSTGTILYHFGQIWDHSAGVLFS
                     TSAYGLTTLCNHIDSKAGELKQYLLSLIEINRGKVYQWAFHDEDILTHKMVQDNQYYF
                     DDPRRCELIPHSDSHCLLRNLLLDERSSTNKVKDNPKSQQLHFPGLFHGTTQTPDTMP
                     QEHTLTI"
BASE COUNT         4464 a         2567 c         3163 g         4864 t
ORIGIN      
        1 aacacggtga acatgttata attaaaatgt agcccgttat gatgtaatgg cattttgaaa
       61 aaaattgctc atcagcgatg gattgggtaa agttgaagta tcaacttcag cgatggcaga
      121 aaaatgtaat aaataattat tttatatggg taattaatgg ttatccgttg tagaatgtca
      181 gaagtatttt agatagtaat tggatgtatt cctaatttgt gttatttact ttaaatgctt
      241 caaatataag gtcttgtgtt attctatcga ggctgttgga gcagtaaata tcatgaaatc
      301 aactaagacg tgtatctaat ttgttgttat aatagcatgg ctaattatga caattcagta
      361 gaagaggtaa gtaaaaaaaa atgagcatag ttaaagtacg aaatattttt ctcattggtc
      421 cgatgggtgc tggtaaaagt actataggac gtgctttggc aaaggagctc aaactagaat
      481 tctatgactc agatgaagta attgaagagc gtgctggcgc agatatatcg tggatctttg
      541 atatagaagg tgaggaagga tttaggcgcc gagagcaaaa ggtcattgat gaattgactc
      601 aaaaaaccaa tatagtattg gcaacgggtg gcggagtcgt gattactcct gaaaacagga
      661 atgccctggc aggccgtggc acagtgattt atctcaaaac atctttgcaa cagcaatttg
      721 aaagaacaaa gcgcgatacc aaacgtcctt tattacaaac agaagatctt gagggacgcc
      781 tggagtcact cagagatgag cgagaacctt tttatgacga attggcagat gtcagttttg
      841 aaacagataa actgactgta aaagctgtag caaacaatat aataaaatac ttatatggcg
      901 aagtttgaac tttatgccga ggttgatgtt tcgatttcag ggcatcaata tccaataatt
      961 atttgccgca atggtttaat tgatcctgaa ttaattaatc gttttatcac ttcaaaacag
     1021 gtgcttattg ttactaatcg aacagtggca cctttgtatc taggccattt gcaatctgtt
     1081 ttaccctcaa aacaatgcga tgttgttatt ctggaagacg gtgaagagca taaaaatcag
     1141 cgcagtttat ttactattta tgattctttg attcaaaaca aacatcatag agatacctca
     1201 atcatcgctt tgggtggggg agtgattggt gatatggctg gttttgcagc ttctacgtac
     1261 caacgaggag tgcgatttat tcagctgcct actacgttat tggcccaggt tgatgcttca
     1321 gttggtggta aaacagcgat taatcatcct gccggtaaaa atatgattgg cagtttttac
     1381 caacctcaag cggtcataat tgatttaaat accttaaaaa cattacctga gcgtgagttt
     1441 cgtgcaggta ttgccgagat gataaaatac gctttgttgg ttggcggctc tttttttgaa
     1501 cgaattcaag aggctctgca acaaggatta acggtacata gtccggagtt accactactg
     1561 atagcagaat gttgtcaagt taaagctaaa attgtagagc aagatgaaag ggaatccggg
     1621 ttgcgtgctt tgcttaatct ggggcatact tttgctcatg cgttggaaac gtataccgat
     1681 tataaaaagt ggttacatgg agaagccgtt gccataggtt tatattgtgc ggctgtatta
     1741 tcagagaaga agggcttgct ggataaacca attgtagacc aggtagaaaa gatgcttata
     1801 catgctggtt tgcctcataa aattccaaac tccatagatt taattcaatt aagagagttg
     1861 atgagtttgg ataagaaaat taaaaataat tgtttacgtt tcgtaatgat taaaaaacca
     1921 ggtgcttgtt atattgatga ttcagttaca gaagattgtt tgcataatgc actgattaat
     1981 gtggtagaag gagaacgaaa atgatagatg gaaaggagcc tcttgatgag ggagttgcca
     2041 atcagcccag aactctattc aaaccaggag cctggcttgc gaaagttgat ttcattaatc
     2101 atttaattct ctttaataat gtactaataa ccattttgtc agagaaagag ggtggaaaaa
     2161 cttgttttaa ctctttgttg aaaagccatt tgaaccaaca aattaaatca gtatcattta
     2221 aggcaaaacc gccatttgac agtcaagata ttatcaatga gtttgccagg cagttgcatc
     2281 ttaataataa ggataacaat attggttctc ttgcagcaca aattaatgaa agaaaaacgc
     2341 atgttttgct gattattgat gatgcacatc acttgcctga aagttttatc aaggaagtga
     2401 tgattattat aaaaaatcag gaagattttg gatttttcca tctttgttta atttctgatt
     2461 attctatcgt tgccacattg aataatcttg ctgttgagcc gtttaataat ttaatacaca
     2521 caatagaact cggagcatta agcgagactg aaaccagaac ctatgtatta caaagagcaa
     2581 tggcttctca tttaatcaac aggccactta ctgacacgca atttaaacag ttttatcact
     2641 taaccaaagg gaacttatca aaaatcaatt caagcctgga attattttta tccaagtgcg
     2701 ctaatgaaaa gcaaaataat aaaaaggcaa ttttaaaaag aataagttta gtcgcgagct
     2761 tcgctattgt tgcaggattg tcctattttt attttgataa tgtctataaa gcacctgata
     2821 atactcccaa actgccagat ttagcttctg taactacact tccacccata aaggacctta
     2881 taaaaactcc cacacagcaa gctgtcccta aacaagaagc tgtaagctat attgcctcat
     2941 gggaagattc ttcaacgagg cagttagtgc attatgggtt acccaaaaaa caaattttag
     3001 atgattttat ggatgaagag gatactctta atacagtggc tattgtagat aaggtcgttg
     3061 tcattccaaa actgaaagct aaaaacattt cagaacaggt cgggcaagcg gtagttagtc
     3121 aatcaaaatt acctcctgtt cctgattcat cacaaacaaa attagccagt gagcaaccag
     3181 acatcaagaa aattaatagt aagctgttta ctatacaatt ggctgccagt cataaagtag
     3241 aggatatcaa caggtttaag aaccaaaaca aatggttagc tcaggcaaaa ataagacatt
     3301 ttactaatgc gaaaggtagt tggtacatat taactatcgg tgaatatgag agcaggaatc
     3361 aagctctgtt gaatataaaa aaactaccag gtgagttagc caaactaagt ccatggatac
     3421 gatctgtgga gggactttca aacattggtt agactaagat aatcaacttg gatatagccg
     3481 ttagttattg attgattctg ggaaaatagg cttaaatctg ctaatcttaa cttagctatc
     3541 agaattttaa ggagaaaaag atgtataaaa gggtattgtt tgctactgac tttgatgagg
     3601 ttggggtgcg agcagctgag aaagctaaaa aaattgctga cgagaatggt gctgatttaa
     3661 ttttagttca tgttgtagag cctattccag cttatgctta cccaggtttt gctggatttg
     3721 cagaagtaga aatgtctatt cgtgagcaag ctgaaaaaga acttaatgaa ttggcagaaa
     3781 aactgggtgt agatgaaaag catcgtttta tagagtatgg ttcaactaaa aatgaaatcc
     3841 taagggtagc aaaagaacat aaaattgatt taattgtgac aggaagtcat ggaaaacatg
     3901 gcctttcttt attattaggt tcaaccgcta atgcaatctt gcacggtgct gaatgcgacg
     3961 tcttgattgt aagacccaaa ataagccact aagaacgccc tctaactaaa gaaattccgt
     4021 actacttggt agtacggata atgctttata gatttctcaa tatctcagaa aaccagtata
     4081 ctatgtgttt tttattctgc tgattaaaac gattcatgaa attgttacgc ggttctactc
     4141 attttgctat atttgataag ggtgcagttg ccactattgg caattttgat ggcgtgcatt
     4201 tagggcatca gcatttgatt aagaccctaa gagcaaaggc tgatgaaatg aacttgcctt
     4261 tagttatttt attgtttgag cctcagccta aagagtattt tcacagagag aaagcaccag
     4321 cacgactttc taccttgaga gaaaaaatag atgtcttaaa cttatgtcag gtggattaca
     4381 tctattgcat caagtttgat gcaaggctgg ctcaaactcc cgctttgtat tttgctcagt
     4441 tttatttatt tgaagcattg aaaatacgct accttctggt tggccaggat tttcgttttg
     4501 gcaaaagcag agaaggtgat gttaatttac tcaaaacact aggtgctaat tattcctgtg
     4561 aagtgacagt gcaatctgat tttcttatag aaaatgaaaa aatcagttcg acgagaatca
     4621 gagaagcctt gcaacaggga aatttacgtt tcgcagccaa gttgttggga agaccataca
     4681 gcatgtgtgg acgtgttatc aaaggggatg gtcgtggtcg tcaatggggg ataccgacag
     4741 ccaatttagg catgcatcgt ttatcgatcc ctttgcaagg tgtatatgct gtacaagtcc
     4801 atattaattc gaatgttttt tatggggttg caaatattgg aaagcggcca actgtagctg
     4861 gaaccaaaaa tattttggag gtccatttat ttgattttca cggatctctg tatggtcagc
     4921 tagtgcaggt aattttcttg cacaaacttc gagatgaagt taaattctca agtgtggaag
     4981 cgttaattac gcagattaat agtgacatca tattggcaaa ggcctattta aaacagaatt
     5041 ggcttgatag tgtgattgat tcatcgaatg atgttgcgaa tggaatcaat aataccgttt
     5101 aatttaccct taatccgggt attttttgta agctcccttt gggctgtgca gacgaaacag
     5161 aacaagggca tttaaaatta tcaaaaactt aatgatttgg cagagtaggc acctatggca
     5221 gaatataaag atactttaaa ccttccaaac acttcatttc caatgaaagc aagtttgtca
     5281 gtgcgagaac ctgaaatgtt ggcggattgg caagcaaagg gaatttatca gaaaattcgt
     5341 aaagctcgtg ttggaagtaa gcgatttatt ttgcatgatg gtccgcccta tgccaacggg
     5401 catctccact gtgggcatgc gctcaataaa attctcaaag atattattat taaatcaaaa
     5461 acctttagtg gttttgatgc cccctttgtc cccggttggg attgtcatgg cttgcctata
     5521 gaattgaatg tagaaaaaaa agtaggtaaa gcagggagca agattagtcc aagagaattt
     5581 cgtgccaaat gtcgagaata cgcagcaagc caaattgata tacaaagaga tgagtttcaa
     5641 cgattgggag tcttgggaga ctggtataac ccttatgtga ctatggatta tcattatgaa
     5701 gccaatatag taagagcttt aggtttaatg attaaaaatg gccatttaca acaaggcttt
     5761 aaacccgttc attggtgtat agattgcgga tccgcgttgg ctgaagcaga ggtggattat
     5821 gaggataaaa cttctccatc cattgatgtg gcgttctcag cagtaaatcc atccgagttc
     5881 cttaattgct ttggaactca gccagcggtg aaaccattaa ttctgcctat ttggactaca
     5941 acgccatgga cattgccagc taacgaagcg gtttgtttgc atcctgaaat tgattatgca
     6001 ttgattgatg caggtaattc ttattatatc gtggctactg atttggttga gtcggttatg
     6061 gcacgttatg gaatcagcca ttacaaaaca tcgggctccg ctaaggggcg agtctttgag
     6121 cattttaaac tgcagcaccc attttataag cgtcaggttc ccgtagttct tgctgagcat
     6181 gtgacaacag aatctggtac gggttgtgta catactgcac ctgctcatgg ccctgatgac
     6241 tatttggtag gccagtccta tcagttgccg ttaataaatc ctgttatggc caatggatgt
     6301 tttgctgaga atgtggagtt atttgcaggc atttctgtat tgaaagcgaa tgagactatt
     6361 ctgacagttt tgtcggaacg gaatgttttg ttagctagtg aatctatcag gcacagttat
     6421 ccgcattgtt ggcgtcataa atcgccaatg atatttctgg ctacgcccca gtggtttgtc
     6481 tcaatggata aatccaattt gcggcaagca ataattaacg agatagataa ggttaactgg
     6541 gttcctgact ggggtaaggc gcgcatcagt aatatggttg aaaataggcc tgactggtgt
     6601 atatcaaggc agagatcttg gggaacaccc atgccattgt ttgtgcataa aaccaccaga
     6661 gaattacatc ctgatacttt ggagttaata gagaaggttg ctgtgatgat tgagaaatca
     6721 ggcatagacg cctggtttga tctggatagc tctgagttgc ttggcgatga tgccaaacac
     6781 tatgataaaa tcacagacac catggatgtt tggctagatt ccggaatatc acattatagc
     6841 gttttaaaac ataataatga tttagatttt ccggctgatg tctattttga aggatccgac
     6901 cagcatagag gttggtttaa ttcctcatta acaactgcag ttgcaatgta tggagttgct
     6961 gcttacaaaa ccgtattaac tcatgggtat actgttgatg ctgagggaaa aaaactatca
     7021 aagtctaaag gaaattatgt tgctctagat aaattagtga atcagcatgg tgcggatatt
     7081 ttaagattat gggtagcgtc aactgattat cgtcatgaag taagtatttc tgaggaaatc
     7141 attaagcgta acgcggatgc ttatcgaaga attcgtaata cagcgcgatt tttattagct
     7201 aatttatttg actttaatcc agccagtgat tgcattgatg ccaaggagtt attagagctg
     7261 gacaggtggg ctctaaagcg ttgccaactt ttacaagaag aaataattac tgcctatgaa
     7321 aattaccact tccatttgat ttaccagaaa atacacaact tctgcgcagt ggatatgggt
     7381 agtttttatt tggatttgat aaaggacagg caatacacca cagcaaaaga cagtatagcg
     7441 agacgatctt gccaaacagc gatgtatcat atggtcaaag cattcactat ctggttagcg
     7501 cctatcttat cttttacagc tgaggaaata tggcaaacaa tacctgggaa taatagcgaa
     7561 tctattttta ttgagcattg gtatgatgcc tggccaacta ttgacgcagt gaacatggag
     7621 gattgggaac agctgcatat cgttcgtgat gaagtaaaca aggctttaga agaaaccagg
     7681 caaagaggtg aaattggttc tgcattggcg gctgaggtaa ctgtttatgc tgatgccaag
     7741 gcattaccaa aattaacgcg tttaggcgaa gagttacgct ttttattcat tacatcagaa
     7801 gccaaagctt gcccaattag tcaatccccc aaaggattag ctgttactga ttgtggggta
     7861 tcaatacagg ttacagccag cgttcacgaa aagtgtgctc gatgttggca tagacgggaa
     7921 gatgttggtc aaaatcaaga gcatcctgaa ctgtgcttgc gctgtgtagg aaacatcagc
     7981 ggatatcatg aagagaggct ttacatatga aaaaatggcc ttggcttgta cttagttttt
     8041 tagtaattat ctgtgatcag ttaagtaagt attgggttgg ggtgttgtta actccatata
     8101 aacccatgcc agttatgcct atgttgaatt tcactttagc ttttaacaca ggcgctgctt
     8161 ttagtttttt aagcggcgca ggcgattggc ataggtggtt ttttgcaggg tttagttttt
     8221 taatgagtat tattttgctg atttggttag tacgtactcc agaacaggca cgatttcaat
     8281 ctgttgggat aagtcttatt ctaggaggcg ctattggcaa cttgattgac agaggtcttc
     8341 atggttatgt gattgatttt attgacgttt attataaaca ccaccatttt gccacgttca
     8401 acttggccga tagcgctata tgtataggag ccgcaatttt agttctggat ttattgattc
     8461 gtagggaata gactcaaact gcctaggaaa taatgtcata agttagtgtc ctcatgtttg
     8521 actatcctct aacagtcggg tttgtgttct ggttagatgc aaataatcct gaaagcacag
     8581 aatagatggc tattttcatt caagatgagc aaaacaagga ctttgttggt aggaggctga
     8641 tctcttacag aaataatagt gccgaagtgg tttagtatct tagccatttt ctaagtcaaa
     8701 atactatacc aaagcttgtc atgcattatt aatggaaaac aatgcttacc aattagaatc
     8761 gatttatttt cagataattg attgtgccaa cctaactaat ccattcagtt gcttatggtc
     8821 agggttatga ataattactg ctgctacagc tggcaagttt aggaaaagct cagcttcatt
     8881 ccagtcaatt tcagctggga acagatttaa tcctggtaaa tatttgctta gagcattaca
     8941 aaatgtcaga ttggcagggt agggtcgcac ttgtttaaat ccaatattcg ctgcggccat
     9001 agcttctgat atggtagcta cacttggaaa atagcacatc gaataaacac ttgcagtttg
     9061 ggctatagaa gctaaaaagc cggggctaga ggcaaaatgt acacccgcct ggtagcattg
     9121 ctctaattgt tgagtatcaa ttatgccgcc ggctccaatt tttagagatg ggtattgtgt
     9181 tttaatcttt accaataaat tggtatcggt cgagttgatc tctactaaat ccaaatcgga
     9241 atttgcaatt tgatcgagtc tgtcaaataa aaaattatcg atatccagtg atatgatcac
     9301 agattgatta cctaagattt tttcaataat catgttttat tccgaaaatt ctgcaataat
     9361 ctttcaatgt tagaagactt gctgattgtt ggcaagggta ttgataagaa aaacaacaat
     9421 ttgtttgatg atgaggtggg gaggggtaga gcaccctgaa ttatgattct cagataataa
     9481 tccagggtag ggagatgaaa gataattcta tcttatgatg tcttgaatgg agataaagac
     9541 ggggtagggt taaatcgttg ctcaaggact tcatctgttt tgcttcttat agaagtaaca
     9601 ctgggttttg tagtatctac cccatattgc tcaagagttt gcagcatacg ttgcatagtt
     9661 tgaaacggta ttgctccaga gcgcggcact tccttaagta gttcaccagt aaaataagta
     9721 cgcgcttttg gatcggcaat tttaatactg agcgccagca gatcatcaaa ggtaacttta
     9781 acattttcat tttttttcat ttcatctatc ttcgtcttga aaaaagtagt cactgacgcc
     9841 aagctcgggg ttggtttcgg tgaactggtt gtacttcctc cagaaggtgt taagacaggt
     9901 gattcagtat ctaaagttgg ttggttgagt tgatttaaag ccacaccaac tgtagattga
     9961 agtttactta tgttattggc tatttctatt ttttcttttc cattgtcttc taattgttgt
    10021 ttcgtctctt caactctttc tttatgaatg gttgtttcta aacctttatt atgatgtact
    10081 aatttcttga cggtcattgg tgtttcatac tgaagtttat gaaaatcatg ctcagctttt
    10141 ttttgttttt ccggactgtc tttgatagat tcccagtctt caccttgttt taaaagataa
    10201 aatttgccgt ctttttcaag tattttttgt tctttatgga taggatagaa tttaccgcct
    10261 aaattaaaca gttgttgatc tttacctatc acgtaatgcg catcatttaa tgatgtcact
    10321 tcctctcctt tctcattaaa aaaggatttt tcttttctat gtactgcaag catatcttgt
    10381 agatttgcca attttaaatt taatccatta tgtttatgca gcaatttggt ggcttcctcg
    10441 ttttctttgg gatctgtgct cataataaga ttatttattg tttccaattg tttttccatt
    10501 tccaaactaa gcttatgaat tagagcttcc atcttgatgg ttgcaagatc atgtttagat
    10561 tggctatagt ctttttgggc tttttctaat gctgcaggat tattcttaat ggcatcccat
    10621 tgaccttttt gcaggagata gaattgtcct tcatgttcta ctacttcctg gtctttatta
    10681 atggccaggt gcgcgtcttt taatgagctg accgggtttc ctttttcgtt aacataggat
    10741 tttttacctg tatgagcgtc atgcaaaact tgcaggttag ccagttttgc ttttatgtca
    10801 tgatgctcac gctgtaagga ttgaacggtt ttctcatcgc ctttatgctt ttccatcagt
    10861 tgagtgagtt tctcactgtc tttgctgaag gcttccattt tttcattaat ttcggatagt
    10921 gataactctt cagaatcagt gagaagtttt tcaaaccctt ccaaattttc ttcataggtt
    10981 ttgtacttgt cttcaagatc tttgccttga cgttccagct tatccagttt tttttctaat
    11041 tcttcgcctt tcttaatatt ctcttgagca cgtttaatag cttgttcata ttcatccagc
    11101 attttttgaa tttctttatc agcttgcgaa gtggatgaag tggactgttg gcttggcttg
    11161 cttgcttttt cagcattttt tatggctttt tcattgtatt cccgaataat ttctttgact
    11221 ttttccgcag catgggattt tttggataaa taccacaaaa acaatgcggc cattaatcgg
    11281 cgtttaaaga gctcatgctc cattctgtct tgttgatttt gtagattgat gtttctttgc
    11341 agagccattt gggcgcctaa ttcagctatt acgtctttac ccgccggaga taaaagaaat
    11401 tttttgacct gggatgcgtt ttttaaccct tctcggccca gattaatggt ggagcctctg
    11461 tcttccttag cctgtggatc aagcaagctg gattctatcc atttctcaaa agaagtttta
    11521 aagggcttga ctggctcatt gggttgagat tcttttttag tggtgggcat tgatagctta
    11581 tcttcttttt tactatcctc aacacgcatt ttttctaaaa caggttcctt ttccttggtt
    11641 tttacggatt caagactccc ttctgatgtt ttaacttgat gtgatttgtt atcttttgcc
    11701 ataagtagga tccttaatca atcgccccca gttatcttat attatacaca atgttgacca
    11761 ataaagcatc agtttattca tgttttaaca ggatcatatc atttactatc gtgcgatctt
    11821 gagtttgcaa ctcatgcatg attggagccg ttttttgctg aatattagta tttcatctta
    11881 gaagcaagta gaataatttg caaataaaaa ccatgaaatc aatgcaatta gatttggaag
    11941 tgtttagata gtcagtgtat gttcttgagg cattgtgtct ggtgtttgtg tggtaccatg
    12001 aaacagacct ggaaaatgca gttgttggga tttcggatta tctttgactt tattggtgga
    12061 gctcctttcg tccaataata aattgcgtaa caagcagtga ctgtctgagt gaggaattaa
    12121 ttcgcaacgt ctgggatcat cgaaatagta ttgattatcc tgcaccattt tatgtgtcag
    12181 tatatcctca tcatggaatg cccattgata tacttttcca cgatttattt ctattaagga
    12241 aagcaaatat tgctttaatt cacccgcttt gctatctatg tggttacata aggtagtcag
    12301 cccatatgcg cttgttgaga acaaaactcc tgctgaatga tcccaaatct gtccgaagtg
    12361 ataaaggata gtaccggtag aataagcaag aagtcgggaa atagggttaa taatagataa
    12421 atttattctt attgttagtg aaagtatgtc tatcataggg agaatcaaaa tatttttaat
    12481 cagctgcagg aggggtaaaa aaagcagcct tatgccatta atgcctatgt ttgtgactgg
    12541 attatctgaa aaatggccaa aaggggaagt aaatccataa agaggggaaa gcgtaaattc
    12601 agatatgaag ttatttgtgg atggacgctc tgctatatcg atgagtaatt tcccaatcgc
    12661 actgaagtta cctaatacag acagtaattt gcggaaaaaa ttggtaattc ctctaaaagg
    12721 gacgtgtatt aaaagcgaac tagcctcaag taaggggatg gttaaaatag ctaaaataag
    12781 atcaacactt gcggctaaag tttgtttacc cagttgtttt atcaatttgc cacttttttt
    12841 ccagccattt ataaatccat caaaaaaacc atagtaaaaa ccttcaaaaa aaggtgcaac
    12901 caataatttt ccaatattta taatattctt gcaaaaccac ttgcaagtcc caaggaacca
    12961 gtcatcaccc gggtgcataa tggtatcata gatagcggca cctcctttac ctccaagagc
    13021 agcataattg gtataaggaa agtcacccat ttcatgttgt agtgaaggaa tcgcttttgt
    13081 taaaccataa ccaaggctaa gcgctaaaga tacaataata gcaatttctg ccgggtcttc
    13141 tttcaggaca gagacagcat cgacaaagaa cttatccaaa ttgccgctca ctaccatacc
    13201 ttgccagaga gttacagagg cagaaatagc ttctgaagtc ttgccatgat tcatcaagtg
    13261 agccaatttt tgcacaggct caattccata aatcaagcca cttaagtgca gcttttttaa
    13321 aatgtcagcg agaacattgg gtgcgagtac agctcctgcg ccatagacat aagctgccat
    13381 ggcaagagtt ccaatcatag ggttacgttc gctagtgtct ataaaaaatc cggctaaatg
    13441 gcgtactacg cccaaagctc tgtgcaaagg attttcatag gtgtgcacag tagggggatg
    13501 gttcgctctt gcaatgacat aggggctgtt gttgatctga tcactaatga actcttcaag
    13561 agtttgacca ttcgcgagaa gtccatgatt ttggagcgct tcatgcagag aggttctttt
    13621 aatttttttg gattttggac gctgatctct ttctgaaaga tgttgtttag gggcatgagt
    13681 tgcatgcaca tgattaaaaa attcttcatg caggtcatgt atgatgaatt ggctcatgct
    13741 tttgtaaaaa cctttaaaaa aatcaggtat acgggaaata aaagctttga aacggaggct
    13801 gattctttca ggcaagtaaa gatgtctttt gctgatttgg cttaaaatat ataaatcctc
    13861 tccatccggc aaaggataaa agagttgatc atgaataaaa tatttgagat gaatcagctt
    13921 attttcgagt cttaacagaa cggcattttt ttgaggcaca ataacccaat taccattagg
    13981 taagtggctt agtaatcttt tcgcctcttt tatactgctt acctctgtct gttgtgctga
    14041 gttttccact agatgattta ccatcgcagc cagactatta taacctcttt gaggcagtcc
    14101 tttgagtttg tagtaaggcg ttattttggt aatagatact ccatcagagc gtttttgtat
    14161 ttcagtttta tgacttggtt ttgttgtgat tgccagataa ttaatccaat cgtgaccgtc
    14221 atgccaaagt ttacttatga atcgttccag ttttgcaaag cgattggccg ggatgttgtt
    14281 taatgctggc gcagggcaga gttggtattg ctgacaaatt accctgagcg catcgtcaag
    14341 ctcactgcta ctgtgcccaa tatggatttc actatcccaa acaaaacaag gagtaattgg
    14401 ttttccaagt tgtgttttag tcactttggt aaagtccatt tgatcctggc gagaaacaga
    14461 aaaaactcgg ttaaaccgat aatgctgtgc tgttttgtgc gcatcatata gcatataacc
    14521 aaaacttcct tctgaaacca caggattatt ggctatcatt cgattgtcgt tctggcaatg
    14581 ttcaataatg gaaatgattt ttcttcttaa ctcctcctgt ccagcatgat catgaggttt
    14641 taattgtctt tcttttttca atagatggtt taaggaacgg atgcaagcat tagccaggtt
    14701 aattttttct tcctgctcat ggcttagggg ttttttatag ctttcagctt gaactttata
    14761 gcgattgatg tgatttataa catcagcaac tagcgaagat ggtctgtctc ccggaagaat
    14821 ttttaacagt tcagggttat gagtgaatag catcagctga actgttttct tgttgtgatt
    14881 ggctattaag cgtagtctgt ctcctccagg aaggagatat tccatattat aattaccata
    14941 aaatactgta ccggcttcgt gactgaaaat acttccagtg atagttggca tcgctttgtg
    15001 tgtgtgcgga gtaactctga gtggaataat aacttgagtt tggccatcag tagtttca
//
LOCUS       DACVWI010000068        14991 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.068, whole genome shotgun sequence.
ACCESSION   DACVWI010000068 DACVWI010000000
VERSION     DACVWI010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14991
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.068"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            141..575
                     /locus_tag="JBH85_07620"
     CDS             141..575
                     /locus_tag="JBH85_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946067.1"
                     /translation="MKRIFLISIIGIVLNSAYAFEHLGECGAHTWHEVTSKSGSWKIT
                     LKMISQNGQFVDPSCAEIIETGLAQNNPLSYGLKFSKDADFNLAYTLTAVSEEQGFQS
                     KACVFVITANGPAQPDIQALSYHGAECLWRVVKGVGENFSVG"
     gene            complement(590..1642)
                     /locus_tag="JBH85_07625"
     CDS             complement(590..1642)
                     /locus_tag="JBH85_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HAU0946068.1"
                     /translation="MSISFKSPILKLYEEINRIRMSIEMHSFDSIAVEFDLKNHSMQK
                     IAIEDLNIDYQDKDKIYWIHSDLNQKNIFKKLREKLRLPEEVIQLCGEKDNRSTTIEI
                     DEALTLQIQGLCSMKLNDNYDADFGNLIIHLTPNYCFTASKTLSSVLFDLLKSCPKSL
                     PYAKTSCFLLFLLLEGVINDYAKIHLAYEELADQLDAQARTTNKNTYSQVLELKHGVM
                     KIKRYTIAIREILMRLTSRNILVISEQCRNSLYNLSNHCHLIVNEIDSLRDILNGLLG
                     QIDNQLMQNMNETMRVLTAFAAIFLPLSLITGIYGMNFYWMPELGWKYGYFWALGLIV
                     LCALLLFLIFRKKKWF"
     gene            1825..2421
                     /locus_tag="JBH85_07630"
     CDS             1825..2421
                     /locus_tag="JBH85_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HAU0946069.1"
                     /translation="MNQDMEKIEKMYQLIMEINKLKLVFRNTVTNPQRNESTAEHSWS
                     ASMITLILMNQLKREFTEVDELKTIKLVLIHDVVEIYAGDVLAFDLAARKDKEKVELE
                     ALEKLSAVYPSFGIELDSLWHEFEERKSLEAKIAKAADAICPIFQRLQAKQSYIPFNI
                     SMAQLEKTKYPYFQFSKTFSNLFEKLKADLLKEQLIFL"
     gene            2499..4061
                     /locus_tag="JBH85_07635"
     CDS             2499..4061
                     /locus_tag="JBH85_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 family protein"
                     /protein_id="HAU0946070.1"
                     /translation="MVNQNESSILLKTLIIKKISIMYDDLWKPYASIQLPSLKLGGIV
                     LNGQLLSETPIHLVLKAFNRHGLIAGATGTGKTKTMQVLAEQLSLNGVPSLVMDIKGD
                     ISGLAMPGQTSTKLVERGQQLHIDFTPRGFPVELLTLTPQDLGVPLRARIDDFGPLLF
                     SLMLDLNDTQAGVVTVLFEYAKANQLNLVNLDDFKSLLQFAQTDRGNQLIAAQYGGVA
                     STSIGTIVRKIIELESQGGKQFFGEPSFVIQDLLRTDANGHGVISILRLLNMQDKPKL
                     FSSFMLKLLSDVYRQMPELGDPDKPRLVLFIDEAHLIFNYSSKALLNLIETIVKLIRS
                     KGIGLIFCTQTPNDIPEAVLSQLGLKIQHSLRAFTAKDRKALKLVSQNFPVSSYYNTE
                     QLLTTLSIGEALVSALDAKGQPTPLVQAMIRAPESRMGTLSNEELKVLVNQSPLFAKY
                     YQMIDVPSAKEKLSELISEQQVAKQQTSQKENDSSVLNNLSKNTLFRQVVRQVFRELT
                     RAILSLFKIKRN"
     gene            4128..5546
                     /locus_tag="JBH85_07640"
     CDS             4128..5546
                     /locus_tag="JBH85_07640"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HAU0946071.1"
                     /translation="MTRIYMINITGTYTDQYQLAMAQVCFLKGQHERIATFDYFFRAL
                     PFKGGYAIFAGLEDLLDVLEQLRFEQQDIEFLQHQNMHPDFIRYLQQFKFNGTVYTSL
                     EGDVVFPTRPVVIIEANLIEAQIIETLLLNIINFQTLIATKARRIRQVAGERILIDFG
                     LRRAQGAGGYFASRAAIVGGFDSTSNVRAGRDYSIPVSGTMAHSFIQSYDSEIQAFSD
                     YAEAWPENCILLVDTYNTLQSGIPNAIKIAKEMEKRGHRLKGIRLDSGDLAWLAKRAR
                     HMLDEAGLNYVAITASNQLDEYVIKNLLEQDAPIDAFGVGTNLAIGAPDAALDGVYKL
                     AFINGQPRIKLSDTPAKITIPYQKQVYRVFERDGTYRGADVVCLKTEKKIDMMHHPFE
                     ILKSLSIKHYKKEALLHKVMENGKRLLPKKSLGEIARFSQQCFDRLPLEYKRFINPHI
                     YKVGLSTELKMKRDQLIAEHSR"
     gene            5530..6171
                     /gene="pncA"
                     /locus_tag="JBH85_07645"
     CDS             5530..6171
                     /gene="pncA"
                     /locus_tag="JBH85_07645"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HAU0946072.1"
                     /translation="MNTQDNFMKTLIILDVQNDFMPGGSLGVPNGDAIVPVINSILHC
                     FDLIVASQDWHPSNHISFASNHTGRKPFEKIKLGNLEQTLWPDHCVQGSVGAQFHPKL
                     NTNSIEAIFRKGTDPNIDSYSGFYDNLHKKTTGLAGYLREKGARELYFCGLCADICVY
                     FTIKDALSQGFDCYLVEDATQALVKDDFIKIKKELIKQGSHIINSSNLLNNLQ"
     gene            complement(6254..6637)
                     /locus_tag="JBH85_07650"
     CDS             complement(6254..6637)
                     /locus_tag="JBH85_07650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAU0946073.1"
                     /translation="MSIQLNHTIVWVKDRDKSAHFLTEILGLPEAIPYGPFMVVEMSN
                     HVSLDFCKTDKEITPQHYAFLVTETEFDDIFKRICERKMDYWADPGQTRLGQMNYNDG
                     GRGLYFNDPNGHLLEIITKPYGSGS"
     gene            complement(6637..7878)
                     /locus_tag="JBH85_07655"
     CDS             complement(6637..7878)
                     /locus_tag="JBH85_07655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HAU0946074.1"
                     /translation="MLIVKTILIMYPKTKLSFMTLLLLISFASVNAVLFTPALPSITA
                     FFRITEHAAQQTITCFLVGYAIGQLVYGPTANRYGRKKTLYIGIGLQIISSLLCVLAG
                     MISMYPLLVLGRFLLALGSGVGLKMTFTLVNECYEPQLAAQKTSYLMLAFAIAPGLSV
                     ALGGILNSHYGWESCFYAGTVYGAILLAMVRQLPETQKNLQLEAFQMKHLLQGYVSQF
                     KNKPLISGGALMGGASCFVYIFAATAPFIAINLLGMSTAEYGAANILPSLGLTLGSIW
                     SAQFAKKYSQRAGIQLGILISGFAALAMMMAALTHHSALIKLFFPMIFIYLGLSFIFA
                     NASTFAMSHTSDKAHGSAVMNFINMGLVTVVILGLSLLPMSQYLLPAIYIILCIFMMW
                     LFFSFIKSNEIISSIDRNKES"
     gene            7969..8832
                     /locus_tag="JBH85_07660"
     CDS             7969..8832
                     /locus_tag="JBH85_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0946075.1"
                     /translation="MGKFDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAEL
                     KAELLVRTTRKLSLTDIGARYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYF
                     AMRFLLPYLPEFMELNPKLQIKIELAERFPDLAQENVDVLFGVSMEGPPELVRKRVST
                     TRYVLCASPDYLAKNGIPKTPSELGKHRYITHSMRNPDNLVTFKDNEQIYVEPVLWLN
                     DSRALCECALLGMGIIKLHEYIVTEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQP
                     KIRRFIDFFTK"
     gene            9038..9787
                     /gene="lem16"
                     /locus_tag="JBH85_07665"
     CDS             9038..9787
                     /gene="lem16"
                     /locus_tag="JBH85_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem16"
                     /protein_id="HAU0946076.1"
                     /translation="MFFKREKNTPISFIAILEKYDINPVNLNIASSYDEELHTPAVLT
                     KYLGRDIKFLVAILEANKGHLAKDGELYKNITDALRFAEYDLERAKNNLNSVHSKRKK
                     IKNKNDMNIESEWNAANHALKKCQTHFDRMESFKNWLDETEEEYLDKDTCKLLKSNIK
                     TLQNLADEITHLTKKANLIYQKYKDFWGENQENIEEKLDSKDQKIDKKEIEKFEKITS
                     SLAKLYQILPEQHQFLDEFLQNVCLITHRLS"
     gene            complement(9799..10806)
                     /gene="legLC4"
                     /locus_tag="JBH85_07670"
     CDS             complement(9799..10806)
                     /gene="legLC4"
                     /locus_tag="JBH85_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegLC4"
                     /protein_id="HAU0946077.1"
                     /translation="MGNLAMKLELNFLQKQTKEIIAELQKLKDSGVTHLDLSGNEFDK
                     RTGIELAAILSALKNSGVTHLDLSLNNFDKMPATDLVVMLSALKGSGITHLDLSGNDF
                     GEKSGAELVEILNAIKGSGITSLSLAENDLGTKTESELFDILSTLKDSGVTHLDLYGN
                     KLGERKGPELSTMLGALKDSGITHLDLSWNNFGKMAKTDLFVMLKAVNHTGITHLNLS
                     DNFLGTKSGKELSELFRQIEGKLTITIAKNKLEKCGCSAKEFARLLFDTSHHYVLGSS
                     EYDKAVSEEFHRLKKQHLVALLFTGKKLAEKKESFFYYEGGRRDVMSLISAKMPSIQI
                     I"
     gene            complement(11115..12455)
                     /gene="lem17"
                     /locus_tag="JBH85_07675"
     CDS             complement(11115..12455)
                     /gene="lem17"
                     /locus_tag="JBH85_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem17"
                     /protein_id="HAU0946078.1"
                     /translation="MAMEDESKVKKGLKEEKEQLNQKWLEQLLNNPRWGPSVVKLAMA
                     RKKENRNKRGEAFNCFVLSRPQNAFEEDEYRKFLDKLKNNINDFSGTTRFQIALFTAD
                     NHHWTAFDFFIVDGKLHVFCLDAANDSAGDAALDEIMSRFPDCDAYRLEPDRDPKAKD
                     SKHFRLIQTDRENCSRMTIEHILLLSKKKFLFNENFANYKVVNGVKLINPDALFRQSP
                     DLYRMTQIDSILDSLMIASPKEAQQLVSKKGLNPEQYRDLLGHTSGKQSKSSKNTTID
                     YKRQRVEKNLLAFLAESEQKHLEDIIDNSEKQWSEFLEMSKSERTQFLLGNIREKPFK
                     EIVGNILGKGIKDRLDHKKYIENDVIKKSSFTLFRGIDKHFEIKKIKAEINELEKALK
                     IVNQLSNDTSADEVLLHLQKQKLPLAVKGEMESAREIYTTVDREKSNLQSHKIN"
     gene            12748..13872
                     /locus_tag="JBH85_07680"
     CDS             12748..13872
                     /locus_tag="JBH85_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RalF"
                     /protein_id="HAU0946079.1"
                     /translation="MHPEIEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAE
                     FFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPG
                     EAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVD
                     GLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSPGYELTSTTLNKDSTFKK
                     LDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQ
                     VYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGDLI
                     KAYDNQKKLITIERNLALKEGVPKDPDAEMQKEKGRQLKF"
     gene            14204..>14991
                     /locus_tag="JBH85_07685"
     CDS             14204..>14991
                     /locus_tag="JBH85_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HAU0946080.1"
                     /translation="MGSFMTDIAVIINNRAKNAHRMEDYLSELRAHDIDYQLYKADPQ
                     QLEKNIQHCCSKYPLLLIGGGDGTVRSAAQWCSNTSVILGVLPLGTMNHFSKELNLPS
                     TTEELIAAIVEKTTTTIDVAEVNGHIFINNSSIGFYSRLAKNRDYYTNFYNKWLTYIP
                     SFIRALSYHPSYALLIKNKELDISIRTSFFMVSNNCYTYEFPLKFTRESFQNEQLGIY
                     YYKRSKLRLFKFLIDFLTDKEHFEIIQTRLPLEVDVVHKNKITIS"
BASE COUNT         4797 a         2691 c         2822 g         4681 t
ORIGIN      
        1 aattagtttt aagcatgagg tatgcgattg caaataattc ttgtttgtat tattgttctc
       61 atttaattaa atgacgctgt attttcaagt tgaaataatt cataaaggac aagtgacttg
      121 atgtttttac aaggaaaata atgaaaagga tttttttaat atcgataatt gggatagttt
      181 tgaattctgc gtacgctttt gagcatcttg gagaatgtgg ggctcatacc tggcatgaag
      241 tgacatccaa atcaggttcc tggaaaatca ctttgaaaat gatcagtcag aatggccagt
      301 ttgttgatcc ttcgtgtgca gaaattattg aaacaggatt ggctcagaat aaccctttga
      361 gttatggcct taaattcagc aaagacgctg attttaatct ggcgtatact ttaacggctg
      421 tgagtgaaga acagggtttt caatcaaaag cctgtgtgtt tgttatcact gctaatgggc
      481 ctgcgcaacc ggatattcag gcgcttagct atcatggggc tgaatgctta tggcgggtag
      541 ttaaaggagt aggggaaaat tttagtgtcg gttagctcta tgaagtagcc taaaaccact
      601 tcttttttct gaaaattaaa aacagtagca gagcacacag cacgattaat ccaagtgccc
      661 aaaagtagcc atatttccaa cctaattccg gcatccagta gaaattcatc ccataaattc
      721 cggtaattaa acttaaaggt aagaatatgg ctgcgaaggc agttaatact ctcatagtct
      781 cattcatgtt ttgcatcaac tgattgtcga tttgtcctaa taagccattt aatatatcgc
      841 gaagagagtc tatttcattg acaataagat ggcagtgatt cgataaatta tataaggagt
      901 ttcgacactg ctctgagatg actaaaatat ttcggctagt gagacgcatt aatatttctc
      961 ttattgctat ggtataacgc ttaattttca ttacaccatg ttttaattcc aaaacttgcg
     1021 aataggtatt tttattggtg gtacgagctt gcgcgtccaa ttgatcggcc aattcttcat
     1081 aagctaaatg aatcttggca taatcattaa ttactccttc cagaagcaaa aataacaaaa
     1141 aacaagatgt tttggcatag ggtaaggatt ttgggcagct ttttaacagg tcaaacaaaa
     1201 ctgaagaaag tgttttagaa gctgtaaagc aataatttgg tgtgagatga ataatcaaat
     1261 tgccaaaatc agcatcataa ttgtcattca acttcattga gcacaagcct tgaatttgca
     1321 aagtgagcgc ttcatcgatc tctatggttg tggatctatt gtctttttct ccacacaatt
     1381 gaatcacttc ttcaggtaat cgtaattttt ctcgcaattt tttaaagatg tttttctggt
     1441 ttaaatcgct atgtatccaa taaattttat ctttatcctg gtaatcgatg tttaaatcct
     1501 caatcgcaat tttttgcata ctatgatttt ttaaatcaaa ttcaacagcg attgaatcaa
     1561 acgaatgcat ttcaatgctc atccttattc gattaatttc ctcatatagt ttaagaatag
     1621 gagacttaaa tgatattgac aaactatttt taaatagtcc gggttttcca atagactgtg
     1681 agtgtatcgt ggagagttaa tctccagttt ggctttcgtc ttgtttatat aattcagact
     1741 ctgctttggg caaggaaaag tgaatttaag cctaaatgag tataaaatca aaatccatta
     1801 atataggtta tttttgagtg cttaatgaat caagatatgg aaaaaattga aaagatgtat
     1861 caactgatta tggaaataaa taagttgaag cttgttttcc gtaataccgt aactaatcct
     1921 caacggaatg aaagcacagc ggagcattcc tggtcagcct ctatgataac ccttattctc
     1981 atgaatcaat taaaaagaga atttacagag gtcgatgaat taaaaactat caaattggtt
     2041 cttatccatg atgtcgttga aatttatgct ggagatgttc tggcttttga tttagcggca
     2101 aggaaggata aggaaaaagt tgaattagaa gcgcttgaaa aactaagtgc tgtctatcct
     2161 tcatttggga tagaattgga tagtttatgg catgagtttg aggaaagaaa aagtcttgag
     2221 gcaaaaatag ccaaagcagc cgatgcgatt tgtccaattt tccaacgtct ccaggcaaaa
     2281 caatcttata tcccttttaa tatttcaatg gctcaacttg agaaaacaaa atacccttat
     2341 tttcaattta gtaaaacgtt cagtaacttg tttgaaaaat taaaagcgga tttactcaaa
     2401 gagcaactta tttttttata gcgccatttg catttgcatt tgctttcaac acatcctgcc
     2461 cgatgtcatg ttaaagctcc ttcaagacag attaaaagtt ggtgaatcaa aacgaatcct
     2521 ctatactttt aaaaactctt attatcaaga agataagcat tatgtatgat gatctatgga
     2581 agccttatgc gtctattcaa ctaccctctt taaaattggg cggcattgtt ttaaatggtc
     2641 agttactctc tgaaacgcct attcacttag tgttaaaggc tttcaatcgg catggtttaa
     2701 ttgcgggagc aaccggaaca ggtaaaacga aaaccatgca ggtattggca gagcaattat
     2761 ctctaaatgg agtacccagt ttagtgatgg acattaaggg ggatatttct ggtttggcta
     2821 tgccaggtca aacttctact aaactagtgg agagaggcca gcagttacat atcgatttta
     2881 ctccccgagg tttcccggta gagctattga cgcttactcc acaagacctc ggggttccat
     2941 tacgtgcgag aattgatgat tttggtcccc tgcttttttc gctgatgctg gatctgaacg
     3001 acactcaagc aggagttgtc actgtattat ttgagtatgc caaggcgaat caactgaatt
     3061 tggttaattt ggatgatttt aaatctttgc tccaatttgc tcaaacggat agaggcaacc
     3121 agctgattgc cgcccaatat ggcggagtcg cttccacatc cattgggact attgtccgta
     3181 aaatcatcga gctcgagtct cagggtggga aacagttttt tggtgaacct tcctttgtca
     3241 ttcaggattt gctgagaacg gatgcaaatg gtcatggtgt tatctcgata ttaagattat
     3301 taaacatgca agacaagccg aagttatttt ccagttttat gctgaaattg ctgtctgatg
     3361 tttatcgcca aatgccggaa ttaggtgatc cggacaaacc acggttggtt ctctttatcg
     3421 atgaggcgca tttaattttt aattattcca gcaaagcatt acttaattta atagaaacaa
     3481 tagttaagct aatccgatct aaaggaattg ggttgatatt ttgcactcaa acgcctaacg
     3541 atatccctga ggctgtttta agccaattgg ggttaaaaat ccaacactca ttacgtgctt
     3601 ttactgcaaa agatcgaaaa gccttaaagt tggtatcgca gaattttcca gtatccagtt
     3661 attataatac tgagcaacta ctcactactt taagtatagg ggaagcttta gtgagtgcct
     3721 tggatgccaa gggtcaaccg acacctttag tccaagcgat gattagagct cccgaatcgc
     3781 gtatggggac tttaagcaat gaggaattaa aagttttagt gaatcaatct cctctttttg
     3841 ctaaatatta tcaaatgata gatgtgccct ctgcgaaaga gaaattgtct gaactaatct
     3901 ctgagcaaca agttgcaaaa caacagacca gtcagaaaga aaacgattcc tccgtgttga
     3961 ataatttaag taaaaacacc ttattccgac aagtggtacg tcaagttttt agggaactca
     4021 ccagagcgat tttgtcttta tttaagatta aaaggaacta gatgtgggtt accttccatt
     4081 aaattgttta atttatacca cgcatagtca aagtaaatgc aattcaattg acaaggatat
     4141 acatgataaa catcacagga acctacactg atcaatatca attggctatg gctcaagtgt
     4201 gttttttaaa agggcagcat gagcgcatag cgacattcga ttattttttt cgtgctcttc
     4261 cttttaaagg aggctatgcg atttttgcgg gtttggagga tttactggat gttctcgaac
     4321 aacttcgctt tgaacaacaa gatatagagt ttttacaaca tcagaatatg catcctgact
     4381 ttattcgcta tttgcagcag tttaagttca atggtacggt gtatacgtcg ctcgagggag
     4441 atgttgtatt tcctacgcgg ccagtggtta ttatcgaagc caatttgatt gaagcacaaa
     4501 tcatagaaac gttattatta aatattatta attttcagac acttattgcg acaaaagcca
     4561 gacgcatcag gcaggttgcg ggagaacgga ttttaattga ttttggacta aggagagcac
     4621 agggtgctgg agggtatttt gcaagccgtg cagccatagt cggtggcttt gattcgacaa
     4681 gcaatgtcag agcagggcgt gattattcaa ttcctgtatc gggtactatg gctcattcct
     4741 ttatccaaag ttacgatagc gagatacaag ctttttctga ttatgctgaa gcttggccgg
     4801 agaattgcat cttgttagta gatacttata atacgttgca aagtggtatt cctaatgcaa
     4861 tcaaaatagc taaggaaatg gagaagagag gacatagact caaaggcatt cgcctggata
     4921 gtggcgattt ggcatggtta gccaagaggg ctcgccacat gttagacgag gccggtttaa
     4981 actatgtggc tattaccgct tccaatcaac tcgatgaata tgtcatcaag aatttgttag
     5041 agcaggatgc gcctattgat gcttttggtg tggggaccaa tctcgcgatt ggtgccccgg
     5101 atgcggctct tgatggggtt tataaattag cgtttataaa tggtcaacct aggattaaat
     5161 tatcggatac ccctgcaaag atcactattc cttatcaaaa gcaagtctac agggtgttcg
     5221 aaagagatgg gacatatcga ggtgcggatg ttgtctgtct caaaacggaa aaaaaaattg
     5281 atatgatgca tcatcctttt gaaattctaa aatcgctttc gataaagcac tataaaaaag
     5341 aagcattact gcataaagtg atggaaaacg gcaaacggtt actacctaaa aaatcacttg
     5401 gagaaatagc caggtttagc cagcaatgtt ttgatcgatt gcctttggaa tacaagcgtt
     5461 ttattaatcc tcatatctat aaagtgggtt taagtaccga gcttaaaatg aagagagatc
     5521 aactgatagc tgaacactca agataatttt atgaagactt taatcatcct cgatgttcaa
     5581 aatgatttca tgccaggcgg ctcactgggg gtaccgaatg gtgatgcgat tgttcccgtt
     5641 attaacagca ttttgcattg ttttgatctg attgttgctt cacaggattg gcatccctct
     5701 aatcatatca gtttcgcctc caatcatact ggcaggaaac cttttgaaaa aatcaagctg
     5761 gggaatttag aacaaacttt atggccagat cattgtgttc agggtagtgt tggagcgcaa
     5821 tttcatccga aattaaatac taattctatt gaagctattt ttcgaaaagg aactgacccc
     5881 aatatagata gctacagtgg tttttatgat aatctgcata aaaaaactac agggcttgcc
     5941 ggttatctgc gcgaaaaagg cgctagagaa ctttattttt gtggtttgtg cgctgatatt
     6001 tgtgtttatt ttacaattaa ggatgctctc agtcagggat ttgattgcta tttggttgag
     6061 gatgcaactc aagcgcttgt gaaagatgat ttcataaaaa taaaaaaaga attgataaaa
     6121 caaggctctc acataattaa cagttcaaat ttgcttaata atttacaata agaaggtctg
     6181 attttttaaa tttgcagctt tgagctcacc aattgatgat ggaactcgct gtcgaaggaa
     6241 ccccgtcgta tttttaagac ccgctaccat aaggtttcgt aatgatttca agaaggtggc
     6301 cattgggatc attaaaatat aatcctcgac ccccatcatt ataattcatt tgacctaatc
     6361 gggtttgtcc cggatcagcc caataatcca ttttacgttc gcaaattcgt ttaaaaatat
     6421 catcaaattc agtttctgtt actaaaaagg cataatgttg gggggtaatt tctttatctg
     6481 ttttacagaa atcaaggctc acatggttgc tcatttcaac gaccataaat gggccatatg
     6541 gaattgcttc aggcaacccc aaaatttctg taaggaagtg agctgatttg tcccgatctt
     6601 ttacccatac gatagtatga ttcaattgta tactcatcat gattccttgt tcctgtcgat
     6661 agaagaaatt atttcattac tttttatgaa agaaaagaat agccacatca tgaaaatgca
     6721 tagaatgatg tagatggctg gtaataaata ttgtgacatt ggaagtaagc ttaatcccaa
     6781 aataaccact gtaaccaatc ccatattgat gaagttcata accgcggagc catgggcttt
     6841 atcggaggta tggctcatgg caaatgtcga agcatttgca aaaataaaag atagtcccaa
     6901 atagatgaat atcatgggaa aaaatagctt gataagcgct gaatgatggg ttaacgcggc
     6961 catcatcatt gccagtgcgg caaaccctga gattaaaatg cctaattgga ttcccgcgcg
     7021 ttgcgagtat ttttttgcaa attgagcaga ccagattgag ccgagggtca gacccaagga
     7081 aggtaaaata ttggcagcgc catactctgc tgtactcatt cctagcaaat tgatggcaat
     7141 aaatggtgcc gttgctgcga aaatgtagac aaagcaggat gcgccaccca ttaatgctcc
     7201 accagagatt aatggcttgt ttttaaattg acttacatat ccctggagca gatgtttcat
     7261 ttgaaacgct tcgagttgaa gatttttttg tgtttcggga agttgcctga ccatggcaag
     7321 cagaatagca ccataaacag ttcctgcata aaagcaactt tcccagccgt aatgggagtt
     7381 taaaatgccg ccaagtgcaa cactcaaacc gggtgctatc gcaaaagcca gcatcagata
     7441 ggaggttttt tgcgcggcta attgaggctc atagcattca ttaaccaaag taaaagtcat
     7501 cttcagtcct acaccggatc ctaaggctaa tagaaatcgt cctaaaacaa gcaacgggta
     7561 catggaaatc attccggcca atacacatag aagactgctg ataatttgca agccaatacc
     7621 tatataaagt gtttttttcc ttccatagcg attcgctgta gggccataaa caagttgccc
     7681 tatggcataa ccaaccaaaa aacaggtaat tgtctgctgt gcggcatgtt ctgtgatcct
     7741 gaaaaatgca gtaatgctgg gcaatgccgg tgtaaatagg acagcattca cggaagcaaa
     7801 agaaattaac aataataaag tcatgaaaga aagtttggtt tttggataca tgatgagaat
     7861 agttttaacg attaacagtt aagatcagta taattattga caaaataatt aacaatatca
     7921 taattaatta acttttatta actatattgc aataataaaa tcgaaatcat gggtaaattt
     7981 gatcaaatca cttactttat tgctgttgtt gaagagcatg gttttgcagc agccgcaaga
     8041 aaatttggcg tatctacagc cgctgttagc aggcagattg cacgtcttga agccgagcta
     8101 aaagcagagc tgttggtgag aacaactaga aaattatcat taactgacat cggggctcgc
     8161 tattatcagc aatgcaaaaa gactcttttg gagttgaatg aggcagaaat agcgattgct
     8221 aatagtcgga atgaagcggt gggcatatta aatgttacta gcagccgtta ttttgctatg
     8281 agatttcttc tcccttattt accagaattc atggagttaa atccaaaatt gcagattaaa
     8341 attgaattgg cggaaagatt tcctgattta gctcaggaaa acgttgatgt gctttttggt
     8401 gtttctatgg agggtccccc tgaactggtg cgcaagcgag tttctacaac acggtatgtg
     8461 ctttgcgcat cgccggatta tctggcaaaa aatggtattc ccaaaacacc ttccgaactt
     8521 gggaagcacc gttatatcac tcacagcatg cgaaatcctg ataatttggt tacatttaaa
     8581 gacaatgagc agatttatgt tgaacctgtg ttatggctca atgatagtcg tgctttgtgt
     8641 gagtgcgcct tacttgggat gggaattatc aaattacatg aatacatagt gactgaagca
     8701 ttgcaagatg ggcgcctcat tgaggttttg cctgaattcc aagagtccag tttatcggtg
     8761 tacctttatt atcaggcaag ccgatattta cagcctaaga tacgaagatt tattgatttt
     8821 tttacaaaat aacaataaaa gcaagtattt tgtttcattc tagcaagtct gagttcaaag
     8881 caaaaaagtt cgggggcacg tgcttttttt agagagagat gtcaggttat gcaaggcctc
     8941 attgtgtcgc aaattagggg tatctgttaa taaatgcttc aggttgcttt gttagaatag
     9001 cagcagtcag aaacattatt aactagagaa tcttgaaatg ttttttaaac gtgaaaaaaa
     9061 tacacctata tctttcatag caattttaga aaaatacgac attaaccctg tcaacctgaa
     9121 tattgcttct tcgtatgatg aagagcttca tacaccagct gttctaacaa agtacctagg
     9181 gcgggatatc aaatttcttg tagcaatttt agaagcgaat aaaggccact tggcaaaaga
     9241 cggtgaattg tataaaaaca tcactgacgc tctgcgattt gctgaatatg acctggaaag
     9301 agctaaaaat aatttgaata gcgtacattc aaaacgaaaa aaaattaaaa acaagaacga
     9361 tatgaatatt gaatcagaat ggaatgcggc aaatcatgcg ttaaagaaat gtcagaccca
     9421 ttttgacaga atggaatcat tcaaaaactg gcttgacgaa acagaggaag agtatttgga
     9481 caaagacaca tgtaaacttt taaagtcaaa tataaaaact ctccaaaatc tggctgatga
     9541 gatcactcat ttaacaaaaa aggcaaactt gatatatcaa aaatataaag atttttgggg
     9601 agaaaaccaa gaaaacatag aagaaaaatt agactccaaa gatcagaaaa ttgataaaaa
     9661 agaaatcgag aaatttgaaa aaataacatc aagcctggcc aaattatatc agatcttacc
     9721 cgaacagcat caatttttgg atgaatttct acaaaacgtc tgtttaatta ctcatagact
     9781 ttcttaataa taactgattc aaattatttg aattgatggc atcttggcag agattaatga
     9841 cattacatca cgccttcccc cctcgtaata aaaaaagctt tcttttttct ctgccagttt
     9901 tttgcctgta aataacaaag ctaccaagtg ctgcttctta agtcgatgaa actcttctga
     9961 taccgctttg tcatattcac tgcttcccaa aacataatga tgactggtat caaatagcag
    10021 tctagcaaac tccttggcac tgcaaccgca cttttccaac ttatttttcg caattgtaat
    10081 ggttaattta ccttcgattt gcctaaataa ctcagataac tctttcccgc ttttcgtgcc
    10141 aaggaaatta tcgcttaaat taagatgggt aattcctgta tgattcactg ctttcaacat
    10201 aacaaacaga tcggtttttg ccatttttcc aaagttattc caactcaaat caagatgagt
    10261 gatcccagag tctttaagag cacccaacat agttgataac tcaggtccct tcctttcacc
    10321 aagtttatta ccatacaaat caagatgagt tactccagaa tccttaagag tactcaatat
    10381 atcgaataac tctgattctg tctttgtccc aaggtcattc tcagccaaac taagtgatgt
    10441 gattccagaa cctttgattg cattcagaat ttcaaccaat tcagccccag atttttctcc
    10501 aaagtcattc ccgcttagat caagatgagt gattccagaa cctttaagag cgctcagcat
    10561 aacaaccaaa tctgttgctg gcattttatc gaaattattt aaacttaaat caagatgagt
    10621 aactccagaa tttttgaggg cactcaatat tgcggccaat tcgatgcctg tccttttatc
    10681 aaactcattc ccactcaaat caagatgggt aactccggag tcttttagtt tttgtagttc
    10741 agcgattatt tcttttgttt gtttttgcaa aaagtttagt tctagtttca tggctagatt
    10801 tcccataatt aagtggatga accatattaa tggaatttaa ttccaattat ggtcttattt
    10861 tgcccaaatt taacaattaa aatcttatgt gtcaaatgtt aattctattc atttacttgt
    10921 catgcgccga tggagacata tgaaagaacg agtcagccta gattcgcgca tagctccatg
    10981 gaatgattat atgtgtcaat ttcgacttaa tctgatacat atttttgtct aaccaagaac
    11041 atctcactga atatatttct acaccatatc aataccttaa tcggttttta agaatcaaaa
    11101 cacataatct gaaactaatt tattttatga gactggagat tggatttttc cctgtctact
    11161 gtcgtataaa tttctcttgc actctccatt tctcctttta ccgcaagagg taatttttgt
    11221 ttttgtaaat gtaacaatac ttcatccgca cttgtgtcat tagataattg atttactatt
    11281 ttcaaggcct tttccagttc attaatttct gctttaattt tcttgatttc aaaatgctta
    11341 tcaattcctc taaaaagagt aaaagaactt tttttgatca catcgttttc aatgtatttt
    11401 ttatgatcga gcctgtcttt tatgcctttg cctagaatat tcccgacaat ttctttaaaa
    11461 ggcttctctc tgatgttacc caataaaaat tgggtgcgtt ctgacttaga catttctaaa
    11521 aactcagacc attgtttttc agagttatca ataatatctt ccagatgctt ctgctcactc
    11581 tcggccaaaa atgctaaaag gtttttctcc accctctgtc tcttgtaatc gatggttgta
    11641 ttttttgatg atttggattg tttacctgat gtatgtccaa gcaaatccct atactgctct
    11701 ggattcaaac ctttcttact gactagttgc tgcgcctctt ttggtgaagc aatcataaga
    11761 ctatccagaa tagaatcgat ttgagtcata cgatacagat ctggagattg cctgaatagt
    11821 gcgtcaggat taatcagctt caccccatta accactttgt agttggcgaa attttcatta
    11881 aataaaaatt tcttttttga caacagcaaa atatgctcaa tagtcattcg tgaacaattt
    11941 tctcggtctg tttgaatcaa acgaaaatgt tttgaatcct tcgcctttgg atctctatcc
    12001 ggctctaacc ggtaagcatc gcaatcagga aatcggctca taatttcatc aagcgcagca
    12061 tctcctgcac tatcattagc cgcatctaaa caaaaaacat gaagctttcc atcaacgata
    12121 aaaaaatcaa atgctgtcca gtggtggtta tctgcagtaa aaagagcgat ttgaaatcgg
    12181 gtcgttccac taaaatcgtt aatgttattt tttaacttat ccaggaattt tcggtattca
    12241 tcttcctcaa acgcattttg tggtctgctc aacacaaaac agttaaatgc ctcaccacgt
    12301 ttgttccgat tttctttttt tcttgccata gctaacttaa ccacggaagg accccagcgt
    12361 gggttattta ataattgctc aagccacttt tgattaagtt gttctttttc ttcttttaac
    12421 ccttttttga ctttggattc gtcttccata gccatttatc ttcaatctga ttctatatta
    12481 actagtatag aacttataca gcacactgcg acgtttttct aatgagtggg attttcagtg
    12541 gggctgttaa aactggtatt tggcatctta atacatgcag aatgaaatag aaggaaaata
    12601 cacctcaaaa ttgcggatta tcctttcttg caagcaggta gtattttttg atcattaagt
    12661 tgtttttact caattagact ataataagat cattgttggc cgctattaaa aggaatccag
    12721 cggttcctca gactaaagga gcagattatg catccagaaa ttgaaaaagc ccaaagagag
    12781 attattgagg cattcaatgc caagccaaaa aatgggataa ataaaataaa agaaatatgt
    12841 gaacaatata aaatttctcc caatgaagag atagctgagt tctttcatca acaaagaaaa
    12901 aatttggatt tagaagcggt tggcgattat ttaagcagcc cagaggcaga aaaccagcaa
    12961 gtattaaaag cttttaccag tcaaatgaat ttcaatgggc aaagttttgt tgagggttta
    13021 aggacctttt tgaaaacatt taaattacca ggcgaagctc aaaaaattga ccggttagtg
    13081 caaagcttta gtggtgccta tttccagcaa aatcctgatg tggtttccaa tgcggatgct
    13141 gcctatcttt tagcatttca aaccattatg cttaatactg atttacataa cccaagtatc
    13201 cctgagaaaa ataaaatgac cgtggatgga ctcaaaagaa atctcagagg aggtaataat
    13261 ggtggagatt ttgatgccaa atttttagag gaactataca gtgagattaa agccaaacct
    13321 tttgagttga atttcgttaa aaccagccca ggatatgaac ttacttcaac cactcttaat
    13381 aaagattcta cctttaaaaa gctggattca ttcttgcatt caacggatgt aaacatcaat
    13441 acagtttttc caggaatagg tgataatgtt aaaacaactg tagatcaacc aaaatcatgg
    13501 ttaagttttt ttaccggata taagggaaca ataacgttga cagataacaa aacatccgca
    13561 caagctacta tccaggttta tactcccaat atattttcaa aatggctatt tggagaacaa
    13621 ccgagagtaa taatacaacc tggacaaacc aaagagtcaa tcgatttggc agcaaaagca
    13681 gcagctgact tttcatcgcc agtaaaaaat tttaaagcga cgtatgatta tgaggtaggt
    13741 gatttaataa aagcatatga taaccagaaa aaactcatta cgattgagag aaacctggca
    13801 cttaaggagg gcgttcccaa agatccagac gctgaaatgc aaaaagaaaa aggtagacaa
    13861 ttaaaatttt aatccaatta gactaagaat aaatcattcg gtctcatagt gtttggactc
    13921 cacaaatctg ggtgaaatgg cctcgatagt ttgaagaatg agattgtttt ttatagggca
    13981 aattgattta tttaatttat caaaattcac attattatcc ttaattaact ttaatgtccc
    14041 tataaaataa tagaagtgta gactttttat ttaactaatt gaactctcaa aaaaatctgt
    14101 ctttcatgcc tacacaagtt aataaaatta aaatgcccga cggcatccca tgttgtctta
    14161 ctataatttt tgaatgtaac ctaaacttta agtaagcagg acattgggga gcttcatgac
    14221 agacattgcg gttattatca ataatcgagc taaaaatgca caccgaatgg aagattattt
    14281 atccgaactc agagcgcatg acattgatta tcaattatac aaagcagacc ctcaacaatt
    14341 ggaaaagaat attcagcatt gttgctcaaa atacccttta ctattaatcg ggggtggaga
    14401 cggcactgtt cggagtgctg ctcaatggtg cagcaatacg tctgttattc ttggtgtgct
    14461 tcctttagga actatgaacc atttttccaa agagttaaat ttaccttcaa ctactgagga
    14521 attaatagca gcaatcgtgg aaaaaacaac gactacaatt gacgtagcag aagtaaatgg
    14581 ccatatattt attaacaact cgtctatcgg cttctactca agactggcaa aaaaccgtga
    14641 ttattataca aatttttata ataaatggct tacttacatt cccagtttta ttcgggcttt
    14701 gtcataccac ccctcttatg ccttattaat aaaaaataag gaacttgata tatcaatacg
    14761 cacttccttt tttatggtaa gcaacaattg ctatacctat gaatttcctc tcaaatttac
    14821 ccgggaaagt tttcaaaatg agcagctggg catttattat tacaaacgta gtaaattgcg
    14881 tttattcaaa tttttaattg atttcttaac ggataaggag cattttgaaa taatacagac
    14941 aagattacct ctggaggttg atgttgttca taaaaataaa attaccatct c
//
LOCUS       DACVWI010000069        14802 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.069, whole genome shotgun sequence.
ACCESSION   DACVWI010000069 DACVWI010000000
VERSION     DACVWI010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14802
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.069"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(45..368)
                     /locus_tag="JBH85_07690"
     CDS             complement(45..368)
                     /locus_tag="JBH85_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946081.1"
                     /translation="MVPIQTGYMEVLAKVSFHKIRFSYTGTEMEKTVILLNVQIDYLK
                     RNLKCCINCSWIINTLWKRYSRHPIIDFSLFRHAIPKHYFTKERHKIRNKLSACLTQA
                     QNIHI"
     gene            367..474
                     /locus_tag="JBH85_07695"
     CDS             367..474
                     /locus_tag="JBH85_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946082.1"
                     /translation="MQISSGGIKAIIYLVAIMALLDLLNEPAVRSQFSC"
     gene            649..1326
                     /locus_tag="JBH85_07700"
     CDS             649..1326
                     /locus_tag="JBH85_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HAU0946083.1"
                     /translation="MRGEFVLSVYMKEPLEKAQACVIWMHGLGADASDMMGLADQLTI
                     EDTALRHVFLDAPRRPVTLNGGMVMPAWYDIYGLGFVDEEDKFGIEQSELLIRKVVDA
                     QYNCGFKPHQIFLAGFSQGGAMALHTALHMTERLCGVIALSAYLPLAKHNKPQLDKNT
                     PIFMGAGQFDPLVLPKWTLQSKDWLLANGYNEVSFHQYPMEHSICFEEIKDLSLWLNK
                     QVQGVLQ"
     gene            1323..1757
                     /locus_tag="JBH85_07705"
     CDS             1323..1757
                     /locus_tag="JBH85_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HAU0946084.1"
                     /translation="MTIVKRSRTVPYSCEQMYGLVNDVEHYSEFLPYCAESKILHRDN
                     DEVQATLVIAAAGMSKSFTTRNRLQTNKMIEIRLVDGPFSHLEGFWRFDQEEKGCRIS
                     FDLEFEFAGKIFSMLLGPIFDQITDKMVDAFCERAEVIYGKS"
     gene            1744..2016
                     /locus_tag="JBH85_07710"
     CDS             1744..2016
                     /locus_tag="JBH85_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HAU0946085.1"
                     /translation="MVKVELVYIANSKNCLHYKMDLKQGATVEEALIESNIYSTCPET
                     RELPVGVYGKRVSVDQVLKEGDRIEIYRPLILDPKEKRRKLAQFKK"
     gene            complement(2105..2449)
                     /locus_tag="JBH85_07715"
     CDS             complement(2105..2449)
                     /locus_tag="JBH85_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HAU0946086.1"
                     /translation="MAKFFMVGKKMRIMTFFICFILTLTLTQCASYDFSRRITQQGNL
                     LPQSKIARLKTGMSKNDVAILMGTSIMSPTFNNDRWDYAYTWRRGKGNLEIRNVVLYF
                     SRGSLVKIEHKP"
     gene            2647..3057
                     /gene="fur"
                     /locus_tag="JBH85_07720"
     CDS             2647..3057
                     /gene="fur"
                     /locus_tag="JBH85_07720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HAU0946087.1"
                     /translation="MEESQQLKDAGLKITLPRIKVLQILEQSRNHHLSAEAVYKALLE
                     SGEDVGLATVYRVLTQFEAAGLVSRHNFEGGHSVFELSQGEHHDHLVCVKCGRVEEFV
                     DEIIEQRQKAIAERAHFKMTDHALNIYGICPQCQ"
     gene            3882..4520
                     /locus_tag="JBH85_07725"
     CDS             3882..4520
                     /locus_tag="JBH85_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAU0946088.1"
                     /translation="MPMNFPIIAYNLYLFQFDKIIFAVMYSLFLIIVLLTVRLNSKLL
                     SKVRALSITDSLTGLFNRRHFDMVFSNELSRAKRNKYPISLVFIDIDNFKYINDTFGH
                     SAGDRFLIHVSNILKQTLRRSSDSMFRIGGDEYAAILINMPPNEVTTVCVSMQEQFNK
                     KNQYKNVSLSMGVISIDSMRVVDQQSAITAADKTLYQAKKAGKNQIKSKSLG"
     gene            complement(4833..5219)
                     /locus_tag="JBH85_07730"
     CDS             complement(4833..5219)
                     /locus_tag="JBH85_07730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946089.1"
                     /translation="MKKWTVLAASSLLMVNAYANESFCGYKDFFHLGDKTHPGIYVVS
                     GYNDSDVVLQIVGPRSFVIRDGFDCRAGYAHVTVAYDNANWCVLDINDGPFMNHPVVS
                     ASCNGLRYINTTYDGFGSYSYSINIE"
     gene            5475..6074
                     /locus_tag="JBH85_07735"
     CDS             5475..6074
                     /locus_tag="JBH85_07735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0375 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946090.1"
                     /translation="MYSSLFLKKDLGHLPEKVIFLDFDGTVALPARKENGEYDVQPDG
                     SIGATHLNKEKFRRLVQFSIHTDIPLYFLSGRPDLQSCVDLMTDFIASVDGFHSGIGG
                     FKKDSLFFISKMIIEEGKLIRKEITTKAQVIQSVHHEKYSYLPKESILLVDDIQEYLD
                     PVRELGYNTLLANPESLEHFNEVEEFIGVTLQKTIAFNT"
     gene            complement(6114..10403)
                     /gene="sdhA"
                     /locus_tag="JBH85_07740"
     CDS             complement(6114..10403)
                     /gene="sdhA"
                     /locus_tag="JBH85_07740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdhA"
                     /protein_id="HAU0946091.1"
                     /translation="MISEKIKLLESFKQNQFSKLIEKINSKILATLKSGHFNPRLAPY
                     LEKMNKDGVPFTNFDLDPENISQIKKLINALYHARLAFLDLENIDIGNIKRTIPDLKL
                     LYSNTIHQAYQAGYLITNLDVDLQEMFKEEIDLILPVIGKLQAFAGEHQECTKRLAES
                     WKDFPISYKAGEVTGIALEQMQPRTGDWDYQFLTQFSAVLPGYIEKLTQYIQQYSSQI
                     KEKEPTLNNEKLEELQNASLKLLNDLEHLKGNDFFISLKVLKYIHIIRNIITLATSSV
                     EQMGHFSDSSQDVIRDNLAQLKYVVLPTLFGLVDKIEDNAMLKPGTLSIPLMEKIKPL
                     YQLLIYYASKPVNFKEKGEELLSIEDSRFLALRLERTYQRIDEANKALFKIQKAQEAL
                     DNFYKILDTPPYNKQPIHQLPKEIKNQLITYYKIISPYMMDVDPDLNILLIDSFQGPE
                     SWSSYLKKPWRWLRGTLPADHASFVLAQKEALQTLISKKKATQQFHIELNRDLIESVH
                     KQTNLVLFPYSEKTNVFLLDETKALNPANGATDKLKFRPEKGHNILVNPEDLTSEQAL
                     DLYQWYRNKREKFRVASKAYNEFITLLKKQTKTIAETEGRILHLNNLDKETKTRCRNL
                     YNIFQPYFIDGIPPELRASAISFDKFLVHSFSNESSTYDAPAVDLFEKLDEHFQIYFT
                     EIDLQWGKKSNQYLKWAQEKFASENNSTELEHDEKLESRAHHLIKHTNFSKCIHEFRT
                     ELNQVISFFNNAMRAQLKQQPNGIPYPELQDHNKELAQSEQVVAIKRIFNSLYHVEKI
                     VVELEKLDTRSYESIYVYHLIQAYDHINEIKKLALKLAVDPHFKLIASELLEKAQTLI
                     ATIQEHSDAYQVSPLEVPYNQDIKYNALWYTLNAFYISPKHIRSLRNTNYLTTEELND
                     LHLKAKKATVTVENIIKSSNSYFKLFLQTPAMYSLYREMTNKLNEFISTSHDAVMNNL
                     DQFRSKIFTPMLMEADAWEDKLGLVPGTISGPLKTITDEYYKGLLHPLALHSKAHIRM
                     ICDKTPIDQRIKTTNKKLENATQHLDKIEKNYKHIIKLYEIIKTKGGKTTDDELIETY
                     KKALYKLVKLQKRLPQNTDPDPKDYELDTLLNSELKEYEPKLTLIKPLIISSYHHYEG
                     LKATYLMKANTAREKLTYLKELRSTQEQEDLLYIEEYTTESFNKQLDAFCNRHIGLQY
                     TDKEYRTKLREYLLTFKESIIQRSKSAEDINLTIKNLLKEKIKNFERDNFEKYYHLDA
                     VRVALAQFKNYFSLSTAAIEQNNSTFESEETLAKKTELINKLVDISEDGTLTPKERVD
                     QISFHVKNPNFERIIMDYKQESYFSFTYLKQCILSLLEALCLYTPERRKLFNNLESSV
                     KTQPKINELTKRFGLFAGNESAISSESRAITPVSSVENNGTIELNQLAPSA"
     gene            complement(10566..11309)
                     /locus_tag="JBH85_07745"
     CDS             complement(10566..11309)
                     /locus_tag="JBH85_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HAU0946092.1"
                     /translation="MNNLPPDIMKNIALLISCEHAVNTVPYEYQTLFEPHKDILESHR
                     GIDFGALEIAQSIHKNNPCSLFQATCTRLLVDCNRSINHPHCFSEITKNLSSDKKKKI
                     LDEFYLPFRNRVMDHIHQLISQGLQVWHLSTHSFTPVMNNIIRMTDIGLLYDPRSNSE
                     KILARQWQKEIKILHPQLKVRMNYPYKGISDGFTTSLRKKYSHHEYIGIELEVNQKLV
                     FHNHSLDALKNTLPLSVSNTIKAYQKSER"
     gene            complement(11290..12546)
                     /locus_tag="JBH85_07750"
     CDS             complement(11290..12546)
                     /locus_tag="JBH85_07750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAU0946093.1"
                     /translation="MSSYNEFAGNMVMSDFPIFSVLGIEIEYMLVDKESLNVQPKSDL
                     ILRALAGHQVNEIELGDIAISNELVLHVLELKNNGPKPLHVPVAEHFQKTIRELQPLL
                     AQHNLLLLPTGAHPWMDPNTETIRWPHGNHDIYNQFNSIFNCQGHGWANLQSMHVNLP
                     YSNEEEFCQLHNATRLILPLLPAIAASTPFLDGQATGLLDSRLYFYSRNQQRIPSISG
                     DIIPEFIRTEREYQEQILEPMYRDISPYDPEGILQYQWLNSRAAIPKFDMKAIEIRIL
                     DSQECVEADIAIAKAINAILKYWQSTSNFYLDNPCDTKSLKYVFDETIKNGLSCHIDN
                     KRLLEQWQLPLQGMSVNTIWSLLIERISHELDRKQQLALELILKQGNLSERILKACSS
                     CVNHDSLKQVYTQLAHCLLRNEQFTP"
     gene            complement(12503..13957)
                     /locus_tag="JBH85_07755"
     CDS             complement(12503..13957)
                     /locus_tag="JBH85_07755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family protein"
                     /protein_id="HAU0946094.1"
                     /translation="MQTVIVTDDLDSWSFLSELAPIVHALEYLSGDEYHQNKSFRVIN
                     LCRSYNYQSIGYYVSLLAQARDHKALPSVHSIQDVLNVSLSKLISQDTHEEIQHSLHD
                     IKGNEFVLSLYFGQNLAKRYATLAKQLHGLFPLPLIRFYLEKKKQWRIKTVVPLSLSD
                     VPEHHLEFMRQSAENYLSKKRVHQWRKKQRFHDLAILVDPSEPNAPSNKKALELFVSC
                     GEELGLNVDIIDKNEAKAIAEYDALFIRATTSVNHYTYRVSRRAAQENLVVIDDPQSI
                     IKCSNKVYLAELLSSHQIMTPDTLFISKYDKELPKIEFPCVLKKPDSAFSHGVVKIDD
                     EKSLQKSLNQFFKNSDLVVVQPFIPTEFDWRIGILDNKALFACRYFMAKGHWQIYDWH
                     CQEENKEGDSETLPLHEVPEQIIKIALKSTRLIGDGLYGVDIKSHGNKYYVIEVNDNP
                     NIDHGLEDKILGQNLYEQIMSVFLQRIRRKHGYV"
     gene            complement(13961..14680)
                     /locus_tag="JBH85_07760"
     CDS             complement(13961..14680)
                     /locus_tag="JBH85_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase-C39 like family protein"
                     /protein_id="HAU0946095.1"
                     /translation="MPMIDLIIQTQPDDETCGPTSLHAIYLYYGLDLPLNEIIQGVDK
                     SLSGGTLTPMLGKHALLHGFRTTVYIYNLNIFDLTWFHNGEVNNSFLMDKLEAQMKYK
                     NDPYITKASLAYLDYLKLGGTIRSKSLNVDLLKNYFNKKIPILTGLSATYLYRSAREY
                     FTPEGKSVYDDIRGEPCGHFVVLCGYDVKKRLVIIADPHAENPLSHNNYYKVSINRLI
                     NSIMLGVLTYDANLLIIEPKE"
BASE COUNT         4376 a         2428 c         2941 g         5057 t
ORIGIN      
        1 atgagatttg ctttgaaact caatgattca ttcttcttgt tattttatat gtgaatattt
       61 tgagcttgag taagacaggc agatagctta ttccgtattt tgtgtctttc tttagtgaag
      121 tagtgcttag gtatggcgtg tctgaaaaga gagaaatcta ttattggatg cctcgagtat
      181 ctcttccaaa gagtgttgat tatccatgag caattgatgc aacacttcaa gttccttttt
      241 aggtagtcta tttgaacatt caataaaata actgtttttt ccatctctgt accagtatat
      301 gaaaatcgta ttttgtgaaa tgacaccttt gccaggactt ccatataacc tgtttgtatt
      361 ggaaccatgc agatcagttc ggggggaata aaagcgataa tttatttggt tgcgattatg
      421 gctttgctgg atttgctcaa tgaacccgca gtcagaagcc agttttcttg ctaaaaacaa
      481 aatactcata aaacaggaca acatacaaaa taaacataat gataaagatt tatacaataa
      541 agtcaatagg tattagaatt accagcgtca atatgcctat aaattgttca atatattttt
      601 aaatgttaaa cttgcgctgc tctattgcat tggcgataat ttacgttttt gcgtggagaa
      661 tttgttttga gcgtttatat gaaggaacct ttagagaaag cacaagcttg tgtcatatgg
      721 atgcatgggt tgggggctga tgcctctgat atgatgggtt tagctgatca gctaacaata
      781 gaagataccg ctttaaggca tgtatttctt gatgctcctc gaagaccagt gactctgaat
      841 ggaggaatgg ttatgcctgc gtggtatgat atttatggat taggctttgt cgatgaagaa
      901 gataagtttg gcattgagca atctgaattg ttaatacgca aggtggttga cgctcaatat
      961 aattgtggct ttaaaccgca tcaaatcttt ttagctggct tttctcaagg gggagctatg
     1021 gcattgcaca cggctcttca tatgaccgag cgattatgcg gcgttattgc attgtccgct
     1081 tatttgccct tggctaagca taataagccg caacttgata agaatactcc catctttatg
     1141 ggagcaggac aatttgatcc tttagttctg ccaaaatgga ctctacagag taaggattgg
     1201 ctcttggcta atgggtataa tgaagtctct tttcatcaat accctatgga acattccata
     1261 tgttttgaag aaattaaaga tcttagcctt tggcttaata agcaggttca aggagtttta
     1321 caatgacaat agtaaaaagg tcaagaacag taccttattc ttgtgagcaa atgtatggac
     1381 tggttaatga tgttgaacat tattccgagt ttctacctta ttgtgcggaa agcaaaatac
     1441 ttcatcgtga caatgatgaa gtccaggcga ctttagtgat agcagctgct ggaatgagta
     1501 agtcattcac tactcgtaat cgattgcaaa ctaacaaaat gattgaaatt cgtctggttg
     1561 atggtccttt tagtcattta gagggatttt ggcgttttga tcaggaagaa aaagggtgca
     1621 gaatttcttt tgatttggag tttgagtttg ccgggaaaat attttccatg cttcttggtc
     1681 ctatatttga tcagataacc gataaaatgg ttgacgcatt ttgcgaaaga gccgaggtca
     1741 tttatggtaa aagttgaatt agtctatata gcgaattcta aaaattgcct gcattacaaa
     1801 atggatttaa aacagggagc tacagttgaa gaggcactca ttgaatcaaa tatttattca
     1861 acttgtcctg aaacgagaga attacccgta ggagtatacg ggaagcgggt ttctgtggac
     1921 caggtattga aagaaggaga tcgaattgag atttataggc cattgatact cgaccccaaa
     1981 gaaaaacgcc gtaaattagc acagtttaaa aaatagaggc aaattaggca ttttaatcta
     2041 cactgaactc ttaaaaaaca attttcccct tgtctaatca cttaggcaag ggggagatat
     2101 taaattacgg cttatgttct atttttacta aagaacctct ggaaaaatat aacacaacat
     2161 tacgaatttc caggttacct ttgcctcgtc gccaggtata agcataatcc cacctatcat
     2221 tgttgaatgt tggactcatt atgctggtac ccattaagat tgcaacgtca ttcttactca
     2281 tgcctgtttt taaccgggca attttggatt gaggcaacaa attaccttgc tgagtaatgc
     2341 gtcttgagaa gtcatatgat gcacattggg ttaaggttaa tgttaaaatg aaacaaataa
     2401 aaaaagtcat tattcgcatt tttttgccta ccatgaaaaa tttcgccata ataacatgtc
     2461 atttattgaa aggcacctgt catcatgtgg aatttggtat ttgccattat tcggccagac
     2521 taagttttaa ggccgctaat ggtttttaga gcatgaaaat tattttaggc cttgatgcta
     2581 attattaatc caattttgct ggaataatga tcaaagctcg aaattcgtta cagttaagga
     2641 gcacaagtgg aagagagtca acagttaaaa gacgctggat taaaaatcac attacctcgt
     2701 atcaaggtat tgcaaatatt ggagcaatca agaaaccatc atttgagtgc agaagcagtc
     2761 tataaagcct tattggaatc gggtgaggat gttggtttag ctactgtgta tagagttctt
     2821 actcaatttg aagcagcggg attagtatcg agacataatt ttgaaggagg acactcggtg
     2881 tttgagttgt ctcagggcga acatcatgac catcttgttt gtgttaagtg tgggcgggta
     2941 gaggaatttg tagatgaaat aatagaacaa agacaaaaag caattgccga acgtgctcat
     3001 tttaaaatga cagatcatgc gctaaacata tatggtatat gtccgcagtg tcaatgactt
     3061 tgatatttta actggattgg cctgtcacct cacggaatat tataagcgta tttactatat
     3121 tcttttgcag tgctttatca ttacaataat cagagtgttt tggtaaaacg ttattttctt
     3181 taaggattca tcacatggag tttgattata ttattgttag tgatggtagc ccaggatagg
     3241 cttttgcttc caggttaagt gccgatccca tcaataaatt attgttgctg gaagcggaag
     3301 atagcctatt tctggaaatg ccaatccgct tgcaatgaga atcgcagaac aattatcaca
     3361 ctatattcta attcttcgtg agagcctcct attctaaatg gaatttgggc ggtaaagagt
     3421 aacactgtaa actagtctat acttgaaatt ataatgaagt tgcttgggtt ttgaattaat
     3481 tatgcatcaa aagaagcggt cttcattgga acttgaagac ttgttgtagt tatttgaggg
     3541 atccttaaga actattccat tcaatatcct ggcggtgatg tgcttgcttt gggttttatc
     3601 tatacgaacg agattccaat caaactggtt attatctggt ttttctcatt ttaattttaa
     3661 gtgtgattcg gtgggtaact agtcgaatta taatcagtaa agagttttac atcacaaaag
     3721 gaaagcagtc tttaattggt tttttactgc tggatttttt tatgggattg gcttggagtt
     3781 tgagctactt tattttttcc ccttatttaa atgacaccag tgagtttatt tttgtattca
     3841 tttcttaatc aatttatctt cccgcctatt atgcttacgt attgccaatg aatttcccaa
     3901 ttattgccta caatttgtat ttatttcagt ttgataaaat aatttttgct gtcatgtatt
     3961 cgcttttttt gatcatagta ttgttgacag taagattaaa ctcaaaatta ctttccaaag
     4021 tgagggcatt atctataacc gattcattga ctggattatt taaccgtcgt cattttgata
     4081 tggtgttcag caatgaacta agcagagcga aacgtaataa atatcctatc agcctggttt
     4141 tcattgatat agataatttc aagtatatta atgatacttt tggtcattct gcaggtgaca
     4201 ggtttttaat tcatgtgtca aatatcctga aacaaacgtt acggcgctca agcgatagca
     4261 tgtttcggat tggtggcgat gaatatgctg ccattcttat taatatgcca ccaaatgaag
     4321 taacaacagt ttgtgtttca atgcaagagc agtttaataa aaaaaatcaa tataaaaatg
     4381 tgtcgttaag tatgggggtc ataagcatcg actctatgag ggtagttgat caacaaagtg
     4441 ccattactgc agcggataaa actctttatc aagcaaaaaa agcagggaaa aatcaaatta
     4501 aatctaaatc gttaggctag caagaattga gagtcaatta aaattgttgg atttgattac
     4561 agcaagtata agataagaga atacaatttt atttctctta tgtcagagat ggcctctgga
     4621 ttaattactt ttaacgtgag ttatggataa gatgctcgtt atcttggatt gtttgagccg
     4681 agggggcatt tatgatgcct cgcgaagcct tgtatgaaat ttaatgattc ttgccggggc
     4741 ttcgagaaga tgctcatgta tcttctcagc ccaaacggtc cctggatatc gattgctttt
     4801 tatataatcg ctatccataa ctcacgttac ttttattcaa tgttgataga ataggagtaa
     4861 cttccaaagc catcataggt ggtattgatg taacgaagac cattgcagga agcactgaca
     4921 acaggatgat tcataaatgg accgtcatta atatcaagta cgcaccaatt ggcattgtca
     4981 taagctacag tgacatgagc atagcctgct cgacaatcaa aaccatctct gattacaaag
     5041 ctacgtggtc caacgatttg taatacgaca tctgagtcat tataaccact gaccacataa
     5101 attccagggt gagttttgtc acctaaatga aaaaaatcct tgtacccaca gaatgattca
     5161 ttggcgtagg cgttgaccat taaaaggcta cttgctgcca gtactgtcca ttttttcata
     5221 cgaaaatacc ttcttattgt tattcaggaa atcgaattat agggaatcga tggctattaa
     5281 acaatcatct tgttcttttg tttttgaaaa acctgttctg caagtgattt ctggaaaggg
     5341 taggaaatat ttcctgttaa agagatgttc agttaccttg tttcgattga tctaatcgga
     5401 tacgctgacc tgtagagatt gagaatctcc acaatatttt gaagggatag aaacattaag
     5461 tatcaggagg aaaaatgtat tcatcattat ttctaaagaa ggacttgggg catttgcctg
     5521 aaaaagttat ttttcttgat tttgacggca ccgttgctct tcctgcaagg aaggaaaatg
     5581 gagaatatga tgttcagcct gatgggtcaa ttggagctac ccacctaaat aaagaaaaat
     5641 ttagacgttt agtacagttt tctattcaca ctgatattcc tttgtacttt ttgagcggac
     5701 gtcctgatct tcaatcttgt gtcgatttaa tgactgattt tattgcaagc gttgatggct
     5761 tccattctgg tattggcggg tttaaaaagg attctctgtt ttttatcagt aaaatgataa
     5821 ttgaagaggg gaaacttatt cgaaaggaaa taacgacaaa ggctcaggtg attcaatccg
     5881 tgcatcatga aaaatacagt tatttaccta aggaatcgat tttactggtc gatgacattc
     5941 aagaatacct cgacccagtg cgggaactgg gttataacac tttgttggca aatccggaga
     6001 gtttggagca ttttaatgaa gtagaggaat ttattggggt aacattacaa aaaactatcg
     6061 cattcaacac ctagacaagg ttatggtaaa ttaaaagatt aaatcaaata tttttatgcg
     6121 gatggcgcta attggtttaa ctcaattgtt ccattatttt caacagaaga aactggggta
     6181 attgccctgg attcactaga gatagctgac tcattgccag caaataatcc aaatcgtttg
     6241 gtcaattcat tgattttagg ctgggttttt acagagcttt ccaaattatt aaatagtttt
     6301 cttctctccg gagtgtacag gcaaagcgct tccaataagg ataagatgca ttgttttaaa
     6361 taggtaaagc taaaatagct ttcctgtttg taatccatga tgattctttc aaaattagga
     6421 tttttaacat ggaatgatat ttggtctaca cgctcttttg gcgtaagggt tccatcttca
     6481 ctgatatcaa ccagtttatt aatgagctct gtctttttcg ccagtgtctc ttcgctttca
     6541 aatgtcgaat tattttgctc gatggcagcg gtagaaagac taaagtagtt tttaaattga
     6601 gctaaagcga ctcttactgc atcaagatga taatatttct caaaattatc tctttcaaaa
     6661 tttttaattt tttcctttag caaatttttt atagttaaat taatatcttc tgcggatttt
     6721 gagcgttgaa taatactttc tttgaaagtc agtaaatatt ctctaagttt tgtgcgatat
     6781 tccttgtcag tgtattgtaa acctatatga cggttgcaga aagcatctaa ttgtttatta
     6841 aatgattctg tagtgtattc ttctatataa aggagatctt cttgttcctg agtcgatcgt
     6901 aactctttaa gataagtcaa cttttctctg gcagtatttg ctttcataag ataagtggct
     6961 tttaagcctt cataatgatg gtagcttgag ataatgagag gcttaatgag cgttaattta
     7021 ggttcatact ctttcagctc tgaatttaaa agagtgtcta attcataatc tttaggatca
     7081 ggatctgtat tctggggtaa tctcttttgt agttttacca atttgtacag agctttttta
     7141 taagtttcga ttaattcatc atcagtggtt ttgccacctt ttgttttgat aatttcatat
     7201 agcttgatga tatgtttata atttttttct attttatcca aatgttgtgt tgcattttcg
     7261 agttttttat tcgttgtttt tattctttga tctattggtg ttttatcaca tatcattcga
     7321 atatgtgctt tggaatgcag cgctaaagga tgtaacaggc ctttataata ttcatccgtt
     7381 attgttttta atggtcctga gatagtgcct ggtaccaatc ctaatttatc ttcccatgcg
     7441 tccgcttcca tcagcatggg tgtaaaaatc ttggagcgga attgatccag attattcatt
     7501 acggcgtcat gtgatgtgct aataaactca ttcagtttgt tcgtcatttc tctatagaga
     7561 gaatacatgg caggcgtttg taagaataat ttgaaatagg agtttgaact tttaatgata
     7621 ttttctacag taacggttgc tttttttgcc tttaagtgta agtcgttgag ttcttctgtc
     7681 gtgagatagt tggtatttct taaacttcta atgtgttttg gcgaaatata aaaagcattg
     7741 agtgtatacc agagagcatt gtatttaata tcctggttat aaggtacttc taagggggat
     7801 acctgatacg catcactgtg ttcttgtatt gttgcaataa gagtttgcgc tttttccagt
     7861 aactcgcttg ctatgagctt aaaatgagga tcaacagcga gttttagcgc taatttctta
     7921 atttcattaa tgtgatcata tgcttgtatt aaatgataga cataaatgct ttcgtaactt
     7981 ctggtgtcga gtttttccag ttcaacaaca atcttttcaa catgatagag gctattgaat
     8041 atgcgtttta tcgcaacaac ctgttcactc tgggcaagtt ctttgttgtg atcttgcaat
     8101 tcagggtaag gtattccatt gggttgttgt tttaattgtg ccctcatcgc attattaaaa
     8161 aacgaaatga cttgattaag ctccgttctg aactcatgta tgcatttaga gaaattggta
     8221 tgtttaatta aatgatgggc tctgctttcc agtttttcat catgttcaag ttcggttgag
     8281 ttattttcac tggcaaattt ttcctgggcc cattttaaat attgattact ctttttaccc
     8341 cattgtaaat caatttctgt aaaataaatt tgaaaatgtt catccagttt ttcaaacagg
     8401 tcaactgccg gagcatcata ggtggatgac tcattagaaa aggaatggac caaaaatttg
     8461 tcaaaactta ttgcggaagc tctgagttca ggaggtatcc catcgataaa ataaggttga
     8521 aatatattat ataaattacg gcagcgagtt ttggtctctt tatcaagatt atttaaatgg
     8581 agaatcctgc cttccgtttc agcgattgtc ttggtttgct tttttaataa ggtaataaat
     8641 tcgttatatg ctttgctggc aactctgaat ttttcacgtt tgtttctata ccattgatag
     8701 aggtcaagag cctgttcaga tgttaaatcc tcaggattaa ccagtatatt atgtcctttc
     8761 tctggcctga attttagttt gtccgtagcg ccattagcag ggtttagtgc ttttgtctca
     8821 tctagaagaa agacattcgt tttttcacta taaggaaata aaaccagatt tgtttgtttg
     8881 tgaacagatt cgataaggtc tctattcaat tcgatatgaa attgttgagt ggctttcttt
     8941 ttgctaatta aagtttgtaa tgcttccttt tgcgctaaaa caaaactggc gtgatcggca
     9001 ggaagagtgc ctcttaacca acgccacggc ttctttaaat aagaagacca ggattccggg
     9061 ccctgaaaac tatcgatcaa caaaatattg agatcaggat ccacatccat catataagga
     9121 ctgattattt tgtaatatgt aatcagttgg tttttaattt ctttcggtaa ttgatgtatg
     9181 ggttgcttat tatagggggg ggtgtccaat attttgtaaa aattatccag agcttcttgc
     9241 gctttttgaa ttttaaaaag ggctttgtta gcttcatcaa ttcgttgata tgttctttcc
     9301 agtcttaaag cgagaaaacg ggagtcctct atactgagta actcttctcc tttttctttg
     9361 aaattgacgg gtttggatgc gtaataaatt aaaagttggt atagaggttt gattttttcc
     9421 attaacggaa tggacagtgt gccaggcttc agcatggcat tgtcttcaat tttatctact
     9481 aatccaaata aagtaggtaa tacaacgtat tttaattgag ccaaattatc acgaatgaca
     9541 tcctgggatg aatcgctgaa atgtcccatt tgttcaacag agcttgtcgc caatgtgatg
     9601 atattacgga taatgtgaat gtattttaaa actttaaggg atataaaaaa gtcattccct
     9661 ttcagatgtt ccaggtcatt tagtaatttt aatgatgcgt tttgtaattc ttccagcttt
     9721 tcattattta gggtaggctc tttttctttg atttgcgaag agtattgttg aatgtattga
     9781 gttaattttt ctatataacc aggtaatacg gcactgaatt gagtgaggaa ttggtaatcc
     9841 caatctcctg ttctcggttg catttgctct aaggcaatgc ctgtaacttc tcctgcttta
     9901 tagcttatag gaaaatcctt ccaagactct gccaaacgct tggtgcattc ctggtgttca
     9961 ccagcaaaag cttgtaattt tccaatgaca gggagaataa gatcaatctc ttccttgaac
    10021 atttcctgca aatcaacatc gaggttagtg attagataac cggcttgata ggcctggtga
    10081 atcgtgttgc tataaagtaa tttgagatcg gggatagttc gtttgatgtt ccctatgtca
    10141 atattctcta aatccagaaa agctaaacgg gcatggtaaa gggcgttaat gagtttcttg
    10201 atttgagaaa tattttccgg atcaagatca aaattggtga atggaacccc gtctttattc
    10261 attttttcca agtagggggc cagtctgggg ttgaaatgtc cactttttaa agtcgcaagg
    10321 atttttgaat taattttttc aattaattta gagaattggt tttgcttaaa ggattctaaa
    10381 agcttgatct tttctgaaat catttcaata ttaaaaaaat taacttgtga tattataaag
    10441 aaaaatactt aagcaaatat taacacatga tcagtgcttg taaaaactca atcttttttg
    10501 taaaaaaatt ttttaattca gccacttggt ttttttaaat tgcaacttga aaaaaatgtt
    10561 gtcgcttacc tctctgattt ttgataagcc ttaatcgtgt ttgatacgct caatggcagt
    10621 gtatttttga gtgcgtccag gctgtggttg tgaaagacaa gtttttgatt gacctccagt
    10681 tcaatgccta tgtattcatg atgactgtat tttttacgca aggatgtagt aaagccatca
    10741 ctgattcctt tataaggata attcatacgt acttttaatt gggggtggag tattttgatt
    10801 tctttttgcc attgtctggc caagattttt tctgaattac tccgagggtc atatagaagg
    10861 ccaatgtcag tcatgcgaat gatgttgttc attacaggag taaaactgtg tgtggacaga
    10921 tgccaaactt gcagtccttg gctaatcagt tggtgaatgt ggtccatgac gcgattgcga
    10981 aacggcaaat agaattcatc cagtattttt ttctttttgt ccgatgataa attttttgta
    11041 atctcagaaa aacaatgggg atgattgata ctcctattgc aatcaaccaa gagccttgta
    11101 caggtggctt gaaacaaact gcaagggttg tttttatgaa tcgattgtgc aatttctagc
    11161 gcaccaaaat caatgcctct atgagattct aatatgtctt tatgaggttc aaacagggtt
    11221 tgatattcat agggaactgt attgacagca tgttcacaac tgattagaag ggctatattt
    11281 ttcattatat cagggggtaa attgttcatt acgaagcaaa caatgggcta attgcgtata
    11341 cacttgtttt aaagaatcat gattgacaca ggagctacaa gccttgagga ttctttcact
    11401 caaatttccc tgttttaaaa taagttcaag agccagttgc tgtttcctat ccagttcatg
    11461 actaattctt tcgatcaata gtgaccagat ggtattgact gacatccctt gaaggggtaa
    11521 ttgccattgc tccagtaatc gtttgttatc gatatgacaa cttaatccgt tttttatggt
    11581 ttcatcaaaa acgtatttta aactcttggt gtcgcatgga ttatcaagat aaaaattcga
    11641 ggtgctttgc cagtatttta aaatggcatt gattgctttt gctatggcaa tgtctgcttc
    11701 tacacattcc tggctgtcaa gaatgcgaat ttcaatagcc ttcatgtcaa acttgggaat
    11761 tgcagcacga gaatttagcc attgatattg taatatacct tcgggatcat aagggctaat
    11821 gtctcgatac atgggttcga gaatttgttc ctggtattcc ctttctgttc taataaactc
    11881 aggaataata tcgccgctga tggagggaat gcgttgctga ttgcgactat aaaagtacaa
    11941 gcgagaatcc agtaatcctg tagcttggcc atcaaggaat ggagtacttg ccgcaatggc
    12001 gggtaataaa ggtaaaatca agcgtgtggc gttatgcaat tgacaaaatt cttcttcatt
    12061 ggaataaggc aggttgacat gcatactttg caagtttgcc cagccatgtc cctggcaatt
    12121 gaaaattgaa ttaaattgat tatagatatc atggttacca tgaggccagc gaattgtttc
    12181 agtatttggg tccatccagg gatgagcgcc agtaggtaat agcaataaat tgtgttgagc
    12241 aagaaggggc tggagctctc taatggtttt ctggaaatgt tcagctactg gaacatgtag
    12301 tggtttggga ccattatttt ttaactcaag gacatgcaat actaattcat tgcttatcgc
    12361 aatgtctcct aattctattt cattaacctg atgacctgcc aaagccctta gaataagatc
    12421 gcttttaggt tggacattta aactctcttt atccaccagc atatattcta tttcaatccc
    12481 caagacagaa aaaataggaa aatcagacat aaccatgttt cctgcgaatt cgttgtaaga
    12541 agacactcat gatctgctca tacagatttt ggcctagtat tttatcttca aggccatgat
    12601 caatattggg attatcgttc acttctataa cgtagtattt attgccatga ctttttatat
    12661 cgacaccata taatccgtca ccaatcaaac gtgtactttt cagagctatt ttaataatct
    12721 gctctggcac ttcatgaagg ggtagtgttt cactatcccc ctctttattt tcttcctggc
    12781 aatgccaatc atagatttgc cagtgacctt ttgccataaa atagcggcag gcaaaaagtg
    12841 ctttattatc aaggatgccg atgcgccaat caaattcagt cggtataaac ggttgaacca
    12901 ctaccaaatc agaattttta aaaaactggt taagagattt ttgtaaagat ttttcatcat
    12961 ctattttaac cacgccatga gaaaaggcgc tgtcaggttt ttttaaaaca caggggaatt
    13021 caatcttggg taattcctta tcatatttgc tgatgaataa ggtgtctggc gtcatgattt
    13081 gatgactgct taagagctct gcaagataaa ctttgttgga gcatttaatt atagattgtg
    13141 ggtcatcaat aacgaccaaa ttctcctggg ctgcgcgtcg tgacacgcga taagtataat
    13201 gattaacgga agtagttgct ctgataaaaa gagcgtcgta ttcagcgatt gcttttgctt
    13261 catttttatc tatgatgtca acgtttaatc ccagttcctc accacaagaa acaaaaagtt
    13321 caagggcttt tttattggat ggggcattgg gttcggaggg gtcgacaaga atggccaaat
    13381 catgaaatcg ttgtttttta cgccattgat gaactctctt ttttgataaa taattttcag
    13441 ctgattggcg cataaactcc agatgatgct ctggtacatc cgacaaagac aaaggaacta
    13501 ccgttttaat tcgccattgc tttttctttt ccagataaaa gcgaatgagt ggtaaaggaa
    13561 aaagaccatg gagttgtttt gccaatgttg catatcgctt tgccagattt tggccaaaat
    13621 agaggcttaa aacaaattca ttgcctttga tatcgtggag actgtgttgt atttcttcat
    13681 gagtatcctg agagatcagt ttggataaac tgacgtttaa aacatcctga atactgtgta
    13741 cagagggtaa tgctttgtga tcacgggctt gtgcaagtaa agatacataa tagccaatcg
    13801 attggtaatt ataagatcgg cataagttaa tgacccgaaa tgatttattt tgatgatact
    13861 catccccact aagatattcc aaggcatgta ctatcggggc aagctcactt aaaaaagacc
    13921 agctatccag atcatcagta acaataactg tttgcattta tcactcttta ggttcaatta
    13981 tgagtagatt cgcatcataa gttagtacac caagcattat agagttaatc aagcgattga
    14041 tacttacttt ataataattg ttatgagaca gtgggttttc tgcatgaggg tcagcaataa
    14101 ttacaaggcg tttttttacg tcataaccgc acagtacaac aaaatgccca caaggctcac
    14161 cacgaatatc atcgtaaact gatttgcctt ccggagtaaa gtattctctt gcactgcgat
    14221 agagataagt agcacttaag ccagttaaaa tggggatttt cttattaaaa taatttttta
    14281 acaagtccac gttcagtgat ttggagcgaa ttgttcctcc cagttttaag tagtctaaat
    14341 aggccagaga agctttggtg atataagggt catttttgta tttcatttga gcttcaagtt
    14401 tatccatcaa aaaggagtta ttgacttcac cattatgaaa ccaggtgagg tcaaatatat
    14461 tcaggttata gatgtaaaca gttgttctaa atccatgaag aagggcatgt tttcccaaca
    14521 taggtgttaa ggtgcctcct gaaagagatt tgtccactcc ttgaatgatt tcgtttaatg
    14581 gcaaatccaa accgtagtat aaataaatgg cgtgtaagct ggttggtccg caagtttcgt
    14641 catcaggttg agtttgtatt attaggtcaa tcataggcaa atccttgcgg taaaaatagc
    14701 gccatcatga tttaaaatta gacatgagtg gcttctttgt caaatggtgt aatcaattca
    14761 ataataagtg attttagaag actgataatc atgtgatatt ta
//
LOCUS       DACVWI010000070        14733 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.070, whole genome shotgun sequence.
ACCESSION   DACVWI010000070 DACVWI010000000
VERSION     DACVWI010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14733
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.070"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..792
                     /locus_tag="JBH85_07765"
     CDS             <1..792
                     /locus_tag="JBH85_07765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChbG/HpnK family deacetylase"
                     /protein_id="HAU0946096.1"
                     /translation="FLCADDFGLNHGITQGILKMARLQRLSAVSCIVNASSFDVDAPD
                     LLALKNGVRTGLHFNLTEGYFLSHPDKLCFGLRELLIRSHLGILNSRLISDELNTQLD
                     HFIKVMGKLPDFIDGHQHIHQFPGIRRIIIDMYEQRLKGKSIFIRSTYPSVNMSGYQA
                     KTKILGITGGKILSSQLKKTNIPHNPYFAGIYDFSARTNYRSLFRQWLNNVPTNTLIM
                     CHPGEGDNSDIIAAARARELNYFLSDEFMQDCEEYQVNLTTGPKS"
     gene            complement(769..1176)
                     /locus_tag="JBH85_07770"
     CDS             complement(769..1176)
                     /locus_tag="JBH85_07770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HAU0946097.1"
                     /translation="MRSPVLMTTALKLSHRLIYFTGVGICAAIVHLLIVFNLVNFLNL
                     QPLLSNAIAFLIAFNVSYLGHKYFTFNQLQDKKQLSLPHFFLVAASAGLLNETLYYLL
                     LRFTTLYYIAALVFVLSIVAVYNYLFSRFWACR"
     gene            complement(1142..2173)
                     /locus_tag="JBH85_07775"
     CDS             complement(1142..2173)
                     /locus_tag="JBH85_07775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HAU0946098.1"
                     /translation="MDSTSKSRLTYEAIYLLYGTLILIMSKTAKHKKLISCVVPVFNE
                     EVLIAEFIAALDKTLKSITYPYEILLIDDGSQDNTFAIIQTLRKEYSLRCIRFSRNFG
                     KEKALSAGLDHARGDAVILLDSDFQHPLELLSEFIAKWEDGYDMVYAVRQNRSDESWL
                     KRVCAKIFYHLTSKINRINIPANAGDFRLLDRKIVNALQTLPERNRFMKGLYSWVGFK
                     QIAVPFNVHPRKSGSSQWSFYSLLDLAITGITSFTAFPLRMISLGGMVVAALALIYAA
                     WIVLSTLIFGIETPGWATIVTAISFFGGLQLFAIGVVGEYIGRVFDEVKHRPHYIIDE
                     ESSFDDHCS"
     gene            2157..2924
                     /locus_tag="JBH85_07780"
     CDS             2157..2924
                     /locus_tag="JBH85_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HAU0946099.1"
                     /translation="MEVESIEGYKNSESIGILSIVFNINNGPILMNDSGWFLISTALL
                     LGMRHGFDLDHLATIDAITRTVRYKPSLSRMVGFLFSLGHGLVVIIVSLIIGGGIISA
                     STPEWLNEVGNIVSVTCLLLFGFLTLWNTVHYSSSAIIPTNLRSYLFRKLADNNVHPL
                     MILFIGALFALSFDTMSQIVLFSLAASALSGFLFSGLLGFVFMLGMMMSDGLNGFFVA
                     SLIRRADGFSLLFSRLVGFGIAFFSIGIAIINCCKLL"
     gene            2936..3277
                     /gene="hypA"
                     /locus_tag="JBH85_07785"
     CDS             2936..3277
                     /gene="hypA"
                     /locus_tag="JBH85_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HAU0946100.1"
                     /translation="MHELWLCKRIVEIIKQQATGNKCRKVKKIVLEIGQLVAVDKHAL
                     NFSFKVITQGTIAQNAELSIVEIPGEAICNSCQQIVPMKQYYDECLVCGNHSLTLTKG
                     EELKVKSMVVE"
     gene            3277..4035
                     /gene="hypB"
                     /locus_tag="JBH85_07790"
     CDS             3277..4035
                     /gene="hypB"
                     /locus_tag="JBH85_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HAU0946101.1"
                     /translation="MCGICGCSVEKGQTMDNGHHAAHHEHSVPHEHSVDIEQNILAQN
                     NEFAAHNRDYFLRHKILALNLMSSPGSGKTTLLSKTISELGKEMDIAVIVGDQQTNCD
                     AQMLKSHGGDAWQINTGKVCHLDAHMISHAIQDISLKKQSLLFIENVGNLVCPASFHL
                     GEQFRIVVLSVTEGENKPLKYPDMFHSADLLLITKADLLPHVNFDLDLCKEYVRRTNP
                     SIDIITLSAVNGVGLKDWHDWLLHSFRLNVQSSS"
     gene            4051..6276
                     /gene="hypF"
                     /locus_tag="JBH85_07795"
     CDS             4051..6276
                     /gene="hypF"
                     /locus_tag="JBH85_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HAU0946102.1"
                     /translation="MELERVQISIQGLVQGVGFRPCVYKLAKQMELTGFVQNNASGVL
                     IEIQGNYLSQFIPKLREQLPPLAAIHNLEFTSLPIVPNERAFEILDSQQGKINTVITP
                     DVCICSECLGELFDPQSRYYRYPFLNCTHCGPRFTITRNLPYDRCQTSMSQFPLCQSC
                     QSDYLNPDNRRYHAQPTACSECGPQLALSVDKVAQRIRDGEIIALKGLGGYQLICDAR
                     NEDAISQLRLRKSREAKPFALMVVNAKSAERIAEVSPQARVVLESRERPIVLLRKKKA
                     LLPDEIAPGLNHFGIMLPSTPLHYLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGGE
                     PLIIDDKKAEQGLISIADKIVSHDREIITRTDDSVVRMINDTSVLIRRARGYVPAPLR
                     LPYEIPPTVALGGHLKNTFCITRGEEAFVSQHIGSLNNKATIEYFHESLNHLLKFLAV
                     KPERIAHDWHPDFYTSRLAQKYDISAYGVQHHHAHLASVVAEHGIQEPVLGLVLDGYG
                     FGSDGEAWGGELLLLEKAEFKRVGHFFPIPQPGGELAAREPWRMAAGILHTLGRGDEI
                     SQRFKEQPQSPFLLQLLEKKIHCPLTTSCGRLFDAVSALLGVESLSLFEGHAAMRLES
                     MVTHPQVLNKGWTINGNVFDMRPTLQFIANTTEQQLGANLFHGTLIAGLSEWVTGICR
                     EKGIHMLLLSGGCFLNQVLAEGLINSLIKSGIKPLLPKLLPPNDGGIALGQAWIVGIK
                     E"
     gene            6286..6513
                     /locus_tag="JBH85_07800"
     CDS             6286..6513
                     /locus_tag="JBH85_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HAU0946103.1"
                     /translation="MCLALPAQIDQVLEDNKAIVNLGGITKEISTVLLEQVSEGEYVI
                     IHAGFALTKLDEREANKTLSLFAHMLKDGLK"
     gene            6510..7616
                     /gene="hypD"
                     /locus_tag="JBH85_07805"
     CDS             6510..7616
                     /gene="hypD"
                     /locus_tag="JBH85_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HAU0946104.1"
                     /translation="MKYIEEFRNGAYAQAIINEIIATAEPQRHYQFMEFCGGHTHAIH
                     RYGIPSLLPNNVEMIHGPGCPVCVLPIARIDKAIALASMPQVILCSYADMLRVPGSGQ
                     KSLLTAKACGADVRMIYSANDALKIAQENPDKDVVFFAIGFETTTPPTAFVIKQAKKL
                     NITNFSVFCNHVLTPIAMDSLLQANEVALDGFVGPAHVSIVIGSFPYEQVCKKYQKPI
                     VISGFEPLDVLHSILMLIQQLNEGRCDVEIQYTRAVNRKGNLLSQRIMAEVLEIRDRF
                     EWRGLGFIPSSALKIKESFSEFDAEQRFELPESAAQEHKQCLCGEVLRGVKKPTDCKL
                     FAKACLPENPLGSCMVSSEGACAAVYAYGRVNAL"
     gene            7613..8671
                     /gene="hypE"
                     /locus_tag="JBH85_07810"
     CDS             7613..8671
                     /gene="hypE"
                     /locus_tag="JBH85_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HAU0946105.1"
                     /translation="MNEILITKKLTGPKLNFKEGTINLTHGSGGRAMAQLIEQLFLTA
                     FDNEWLAQKNDQACFIVPSGRMVMATDAHVISPLFFPGGDIGSLSVHGTVNDVAMSGA
                     KPLYLTASFILEEGFPLKDLRKIVYSMADAARQAGVAIIAGDTKVVERGKGDGIFITT
                     TGVGIVPAGIHISGDAAKPGDKIIVSGFIGDHGVAIMAHRNNLEFQTKVQSDTASLHG
                     LVGEMVKAVPELHCLRDPTRGGLATTLNELALQSKVGFVIDESKIPIRTEVASACELL
                     GLDPLYVANEGKLIAVCPSEKAERLLTAMKAHPLGLHAEIIGEVIEDHRYFVQLKTKL
                     GGLRIVDWLAGEQLPRIC"
     gene            8635..9846
                     /locus_tag="JBH85_07815"
     CDS             8635..9846
                     /locus_tag="JBH85_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase subunit A"
                     /protein_id="HAU0946106.1"
                     /translation="MAGRRAIAQNLLISNNDRQERTTRMNDKRNCFLPHDKLQHLIDS
                     LQNAGYSCVGPQVRDGAIVYDVLTRAEQLPWGMRDHQEPGGYRLEQIPERKAFAFANG
                     PQGIKPLLFKPQETVWRVERDEQGKLCFKPHQPDETPVAIIGSRACDLAAMSIQDKVF
                     IENNKPDPRYKRRREQLFVVAVNCTYSSANCFCVSAGTGPAVNNSFDILMTEIEDGFV
                     VEAGSDKGKKIMNQLDLHDAKSAQCTDAQNNVKQAAALQTKRIPLDNKRDLRDLLFSN
                     LNHTRWDDVAERCLSCGNCTLVCPTCFCHSEVEKPGLDGCTSEHHREWDSCFTTGHTY
                     LNGKIIRDDTKKQYRQWLTHKVGSWFDQFDTSGCVGCGRCVTWCPVGIDITEELAAIS
                     GESNARKIENE"
     gene            9839..10684
                     /locus_tag="JBH85_07820"
     CDS             9839..10684
                     /locus_tag="JBH85_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe hydrogenase subunit gamma"
                     /protein_id="HAU0946107.1"
                     /translation="MNEVVYDPYLPKEVEIIQRTQESSSIFTLHFRFTDEEHHKQFQF
                     YPGQFNMLYLYGVGEVAISIVSDPRKKTFLSHTIRAVGRVTKAMQKLQVGDRLGIRGP
                     FGVGWPLQKTIGKDIIVLTGGLGCAPSVSIINYILGRRRHYGKLSILQGVKHSEDFIF
                     RKQYAKWQKSDHTEVYIAADQAGPKWPWGVGYVTDLIDHIIIQPDNSVVMMCGPEMMM
                     NTAVKVFTQKGILENDIYLSMERNMECGIGHCGHCQYGGLFVCKDGPVFAYSQVKELF
                     KESGF"
     gene            10702..11487
                     /locus_tag="JBH85_07825"
     CDS             10702..11487
                     /locus_tag="JBH85_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfhydrogenase subunit delta"
                     /protein_id="HAU0946108.1"
                     /translation="MKPRIAVYKFTSCDGCQLAFLNAGESLLTLSDLVEIVHFAEAGM
                     VDVDMKVDIAFVEGSISTPDEEHRIRKIRENSQYLITIGACATAGGIQALRNFADSRE
                     WMASVYASPDYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR
                     DSECMECKRKGNVCVLVTKKQPCMGPVTQTGCGSLCPTLGRACYACYGPKENANPNSL
                     GEWFLSIGLTKEAIARQFLHINNQAPAFNQAGNYFKGIKISNG"
     gene            11480..12772
                     /locus_tag="JBH85_07830"
     CDS             11480..12772
                     /locus_tag="JBH85_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe hydrogenase subunit alpha"
                     /protein_id="HAU0946109.1"
                     /translation="MGKDISINVPILARVEGEGALELCIRDSKIETLKLKIYEPPRLF
                     EKFLEGRSYNEVLDFVARICGICPVAYQMSATQAIEQCFNLSPTPWVRDMRRLFYCGE
                     WLESHSLHVYFLALPDFLGFQSAPEMARKYPEEVKCGLRIQAFGNDLIKLLGGRSVHP
                     VGACVGGFYKAPSHPQIKLILDKAKERISDCEALIHWLASLSLPDNSHDFTSVSLYHP
                     TEYPMNEGRIVSDRGLNITKEEFDAYFKEHHVDYSNALHCLLQNKPYLVGPLARINNC
                     FGHLPAPIHLLLQSLNIQFPSRNMCHSIIARAVEMYYCVLEAIRILEQYDLPEQSRPE
                     IKPQAGEGAGCTEAPRGMLWQHYVFDETGQVLQARIVPPTSQNQARIEEDLKHSLIQF
                     GLNQEEEAIRYFSEMIIRNYDPCISCSTHFLNLKIDRI"
     gene            12769..13248
                     /locus_tag="JBH85_07835"
     CDS             12769..13248
                     /locus_tag="JBH85_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protease"
                     /protein_id="HAU0946110.1"
                     /translation="MNLIKILGIGSPFGDDQVGYLLADCLKTELSKDQYISKLVSIES
                     HDRPGLRLIEVMNPAKVVFLIDAVKSGCAIGTIHRLKNNEIFAFQNRLSTHEIGVVEA
                     LQIGQSLNALPEDIILYGIEIDSIAFNATLSKSVEKAMKVVVIQIKKELKDMLNHIV"
     gene            complement(13277..14692)
                     /gene="sidD"
                     /locus_tag="JBH85_07840"
     CDS             complement(13277..14692)
                     /gene="sidD"
                     /locus_tag="JBH85_07840"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T4SS effector deAMPylase SidD"
                     /protein_id="HAU0946111.1"
                     /translation="MRSIITQICNGVLHGQSYQSGSNDLDKGNSEIFASSLFVHLNEQ
                     GKEIIKHKDSDDKIVIGYTKDGMAFQIVVDGFYGCERQAVFSFIDNYVLPLIDNFSLD
                     LTRYPDSKKVTESLIHTIYSLRSKHAPLAEFTMSLCVTYQKDEQLFCAGFGIGDTGIA
                     IKRNEGTIEQLVCHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMPGDELVGYTYV
                     PPMLEMTEKEFEVETVDGKKINKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLV
                     EQAKETGQIQRFGDDFTVGRLVIPDQLLINQLRIHALSIGVSDGLLSYIKNENENKGF
                     LGIYGFFTGADKNIEKATLYKNLIAKYQNNHFISLIILSALVSDSKTPLMTQYLVGYL
                     DFPSKALLANKITELLLKELENPDMREILGSRLATDVIEELETKIIRYIHNPAGSDIH
                     STLNLWTADKIKAATNSSLTI"
BASE COUNT         4321 a         2622 c         3260 g         4530 t
ORIGIN      
        1 ttcttgtgcg ctgatgattt tggccttaat catggtatta cccagggtat tttaaaaatg
       61 gctcgtttac agcgcttatc cgcagtaagc tgtattgtga atgccagttc ttttgatgtc
      121 gatgccccag acttattggc tttgaaaaat ggggttcgca ctggcttgca ttttaatctc
      181 acagaaggtt attttctatc tcatcctgac aagctttgtt ttggtttaag agaattactt
      241 atcagatcgc atttgggtat cttgaattca agattaatct cagatgaatt gaatactcaa
      301 ttggatcatt tcataaaagt catgggaaag ttgccggatt ttattgatgg tcatcaacat
      361 atccatcagt ttcctggtat taggcgaatt attattgata tgtatgaaca gcgattaaag
      421 ggaaagagta tttttattcg ttccacgtac ccttcggtta acatgtcagg gtatcaagca
      481 aaaacaaaaa ttctgggaat aactggcggt aaaattttaa gtagccagtt aaagaaaaca
      541 aatattcctc acaatcctta ttttgcaggg atttacgatt tttctgccag aacgaactac
      601 agatctttat tcaggcaatg gttaaacaat gttccgacaa ataccttaat catgtgccat
      661 cctggtgaag gtgacaatag tgatattatt gcagcggcaa gagccaggga actaaattat
      721 tttttgagtg atgaatttat gcaagattgt gaggaatacc aagtcaattt aacgacaggc
      781 ccaaaatctt gaaaaaagat agttgtaaac tgcaacgata cttaaaacaa aaaccagggc
      841 agcaatataa tataacgttg tgaagcgtaa tagcagataa tatagtgttt cattaagtag
      901 gccggcagaa gctgccacta gaaaaaaatg aggcaaactt aattgttttt tatcttgtag
      961 ctgattaaaa gtgaaatatt tatgacctaa atagctgaca ttgaatgcaa ttaaaaaagc
     1021 aatagcatta gacagcagag gttgaagatt tagaaaattg actaaattga acacgatcaa
     1081 aagatgtacg atagcagcgc agatccctac tccagtaaaa taaattaatc gatgggataa
     1141 tttaagagca gtggtcatca aaactggact cctcatcgat aatgtagtgg ggtctgtgtt
     1201 tcacttcatc aaaaacacgg cctatgtatt cgccaactac accgatagca aataattgca
     1261 atccgccaaa aaaactgatt gcagtgacta tggttgccca gccaggggtt tcaatgccaa
     1321 agattagcgt gcttaataca atccaggcgg cataaataag cgccagggct gccaccacca
     1381 ttcctcccag ggaaatcatt cttagaggaa aagcagtaaa cgatgttatg ccagtaattg
     1441 ccaaatccag taaagaataa aaactccatt gtgaactacc cgatttacgg gggtgtacat
     1501 taaatggcac ggctatttgt ttaaaaccga cccagctgta taaacccttc ataaagcgat
     1561 tacgttcggg aagggtttgt agtgcattaa caatttttct atcgagcaat ctaaagtcac
     1621 ctgcatttgc cgggatatta atacggttta ttttggaagt gagatgataa aaaattttag
     1681 cgcaaactcg ttttagccat gattcgtcag aacgattttg cctcacggca taaaccatgt
     1741 cataaccgtc ttcccatttg gcgataaatt cgcttaataa ttcaagcggg tgttggaaat
     1801 cactatccaa taagatcaca gcatctccgc gcgcatgatc caatcctgca ctgagcgctt
     1861 tttccttgcc gaaatttcta ctgaaacgaa tgcaacgaag agaatactct tttcttaatg
     1921 tttgaatgat tgcgaaagta ttatcctggc ttccatcatc tatcagtaga atttcataag
     1981 gataagtgat gctcttaaga gttttatcca atgcggcgat gaattcagca ataagtactt
     2041 cctcattaaa aacaggaaca acgcaagaga tgagtttttt atgttttgca gttttagaca
     2101 taatgagtat taatgtacca tacaaaagat agatagcttc atatgttaac ctactcttgg
     2161 aagttgagtc cattgagggt tataaaaaca gtgaaagtat tggtatattg tccatagtct
     2221 ttaacattaa taatggcccc atactaatga acgattcagg ttggtttttg atttcaactg
     2281 ctctcttgct tgggatgcgt catggttttg atttggatca tctggcaacg atcgatgcga
     2341 taactcgcac agttcgttat aaaccttctt tatcgcgcat ggttggcttt ttgttttcac
     2401 taggccatgg tttggtagtt attattgtga gtttgatcat tggcgggggt attatttcag
     2461 cgagtactcc tgaatggtta aatgaagtgg gaaatattgt atcagttacc tgtttattgt
     2521 tatttgggtt tttaactttg tggaatacgg ttcattattc atcttctgcc atcataccaa
     2581 ccaacttaag gagttattta ttcaggaagc ttgctgataa caatgtacat cctcttatga
     2641 ttcttttcat tggtgcgttg tttgccttat cttttgatac gatgagtcaa attgtattgt
     2701 tttcacttgc agccagtgct ttatcaggtt ttctattttc cgggttatta ggttttgttt
     2761 ttatgctggg aatgatgatg tcggatggat taaatggatt ttttgtagca agcttgattc
     2821 ggcgtgctga tgggttctca ttacttttct caagattagt aggatttggc attgcttttt
     2881 ttagcatagg tattgctata atcaattgct gcaaattgct ttaaacaggc taaaaatgca
     2941 tgaattatgg ttatgtaagc gtattgtcga gattatcaag caacaagcca ctggcaataa
     3001 atgccgaaag gtaaagaaaa tagtgctgga aatagggcag ctagtagcag tcgataagca
     3061 cgcattgaat tttagcttta aagtgataac tcaagggacg attgcacaaa atgcagaatt
     3121 atcgattgta gaaatcccag gtgaagcaat atgcaattct tgtcaacaaa ttgtaccgat
     3181 gaaacagtat tatgatgaat gcctggtttg cggcaatcat tccttaacac tgacaaaagg
     3241 tgaagaatta aaagtgaaat caatggtggt ggaataatgt gcgggatatg cggatgttca
     3301 gtagaaaaag gtcaaaccat ggataatggg catcatgctg ctcaccatga gcattctgtg
     3361 cctcatgaac attcagttga tatcgagcag aatattttag cgcaaaacaa tgaatttgct
     3421 gctcataacc gggattattt tctcaggcat aaaattttgg ctttgaattt gatgtcaagc
     3481 cctggatccg ggaagacaac attgctttcc aaaaccattt ccgaacttgg caaggaaatg
     3541 gatattgcag tcatagtagg tgatcaacaa acaaattgtg atgcccaaat gctaaaatct
     3601 catggagggg atgcctggca aattaatact ggaaaagtat gccatttgga tgcccatatg
     3661 atcagtcacg ccatacaaga tatttcccta aaaaagcaat cgcttttatt tatcgaaaat
     3721 gtgggtaatc tcgtttgccc ggcttcattt catctgggcg agcaattcag aatagtagtt
     3781 ctttctgtga cggaaggaga gaataaaccg ctcaaatacc ctgatatgtt tcattcagca
     3841 gatttgcttc tgataaccaa agcagattta ttaccccatg tgaattttga tttggattta
     3901 tgtaaggaat atgtacgccg cacgaatcca tccatagaca ttattaccct gtcagcggtt
     3961 aatggtgttg gattgaagga ttggcacgat tggttgttgc attcttttag gttgaatgtc
     4021 cagtcttctt catagaaaaa gtggtagccc atggaattgg aacgggtaca aattagcatt
     4081 caaggactag tgcaaggggt tggttttaga ccgtgcgttt ataagcttgc caaacaaatg
     4141 gaattaactg gctttgtaca aaataatgca tcaggtgttt tgatagaaat tcaaggcaac
     4201 tatttatcac aatttattcc gaaattaaga gagcaattac ctcctctcgc agcaattcat
     4261 aacctggagt tcacttcact gccaattgtt ccgaacgaaa gagcttttga aattcttgat
     4321 agccagcagg gtaaaataaa tactgtcatt actccggatg tttgcatttg ttctgaatgc
     4381 ctcggtgaat tatttgaccc tcaaagcaga tactatcgtt atcctttctt aaattgtact
     4441 cactgtggtc caaggttcac aattaccaga aatctgccct atgatcgttg tcaaacatca
     4501 atgagtcagt ttcccctttg tcaatcgtgt caatccgact atttaaatcc tgataaccgt
     4561 cgctatcacg cgcaacctac agcctgtagt gaatgtggcc cgcaactcgc gctatcagtc
     4621 gacaaggtag ctcaaagaat tcgggatgga gaaattattg ctttaaaggg tttgggagga
     4681 tatcaattaa tttgtgatgc tcgaaatgag gatgctattt cacaattgcg gttaagaaaa
     4741 agtcgtgagg ccaaaccatt cgctttgatg gtagttaatg cgaaaagtgc agaaagaatt
     4801 gccgaagtaa gcccccaggc cagagtggta ttagaaagca gagaaaggcc gattgtcttg
     4861 ttaagaaaaa agaaagcgct tttaccggat gagattgctc cgggcttaaa tcatttcggt
     4921 atcatgctac cttctactcc attacattat ttgcttttta attcgttcct tggcaacccg
     4981 gattattgcc aatggctgga tgagtatcat tccatggtat tagtggtgac cagtgcgaac
     5041 ataggcggtg aaccgctcat tattgatgat aagaaggccg agcaaggttt aatttcaata
     5101 gccgataaaa ttgtctctca tgatcgggaa atcattactc gcacagatga ctctgttgtt
     5161 cgcatgatta atgacacttc agtattgatt cgtcgggcac gcggctatgt gcctgctcct
     5221 ttaagattgc cttatgaaat tccccctacc gtggccttgg gaggacatct taaaaatacc
     5281 ttctgtatta ctcgtggcga agaagctttc gtttcacaac atattggcag tttaaacaat
     5341 aaagcgacga ttgagtattt tcatgagtca ttgaatcatt tattaaaatt tcttgcggtc
     5401 aaaccagaac gaatcgctca tgattggcat cctgattttt ataccagcag attggcgcaa
     5461 aagtatgata tatctgctta cggggtgcag catcatcatg cccacttggc ttctgttgta
     5521 gcagaacatg gaattcagga gcctgtatta ggattggttc tggatggcta tgggtttggt
     5581 tctgatggcg aagcttgggg gggcgaatta ttattactgg agaaagcgga atttaagcgc
     5641 gttggacatt ttttccctat tcctcagccc ggaggcgaac ttgctgcaag agaaccctgg
     5701 cgtatggctg ctggaatttt gcatactttg ggaagggggg atgagatttc gcaacggttt
     5761 aaagagcagc cccaatcgcc atttttactg caattattag aaaaaaagat tcattgtccg
     5821 ctgactacca gttgtgggcg actgtttgat gcggtcagcg ctcttttagg ggttgaatcg
     5881 ctctccttgt ttgaaggtca tgcggccatg agattggaaa gcatggtgac tcatccacaa
     5941 gtcttaaaca aaggctggac gataaacggc aatgtttttg acatgcggcc tactttacag
     6001 tttatagcaa acacgacaga gcaacagtta ggggccaatc tgtttcatgg tactttaata
     6061 gcaggtctta gcgagtgggt tacaggaatt tgtcgagaaa aagggattca catgctacta
     6121 ttgagtggcg gctgtttttt aaaccaggtt cttgcggaag gcttaattaa ttcattaatt
     6181 aaatcaggta ttaaacccct gttgcccaaa ttgcttccac caaatgatgg tggaattgcg
     6241 ctaggtcaag catggattgt tggaataaaa gaataagggt ggcttatgtg cttagcgttg
     6301 ccagcgcaaa ttgatcaggt tttggaagat aacaaggcaa tcgttaattt gggtgggatc
     6361 accaaggaaa tttccactgt tcttttggag caggtttctg aaggagagta cgtcattatt
     6421 catgcaggat tcgccttaac aaaactggat gaaagagagg caaacaaaac attgagtttg
     6481 tttgcccata tgctaaagga tggcttgaag tgaaatacat agaagagttt cgtaacggtg
     6541 cttacgcaca agccattatc aatgaaatta tcgcaacagc agagccgcaa agacattatc
     6601 agtttatgga gttttgtgga ggccatactc atgctattca tcgttatggg attccaagtt
     6661 tgcttcccaa caatgttgaa atgattcatg gccccggttg tcctgtttgc gttttgccta
     6721 tagcgagaat tgataaggct attgcgcttg cctcaatgcc gcaagtgatt ctgtgcagct
     6781 atgctgacat gctgcgagtc ccgggaagtg gacaaaaaag tttgttaacc gccaaagcat
     6841 gcggcgctga tgtcaggatg atctattctg cgaatgatgc attaaaaatc gctcaggaaa
     6901 accccgataa agacgttgtg ttttttgcta taggctttga aacaacaaca cctcccactg
     6961 cttttgtcat taagcaagct aaaaaattaa acatcactaa tttcagtgta ttttgtaacc
     7021 atgtgttaac tcccattgct atggatagtt tgctgcaggc caatgaagtt gccctggacg
     7081 gctttgttgg cccagcccat gtcagtatcg tgattgggag ttttccttat gagcaagttt
     7141 gtaaaaaata ccaaaaacct atcgtgatat cagggtttga gccgttggat gtgttgcatt
     7201 ctattctgat gttaattcaa caattgaatg aggggcgttg tgatgtggaa attcaataca
     7261 ctcgtgcagt gaatcgtaag ggtaatcttt tgtcacaacg catcatggcc gaagtcctgg
     7321 aaatacgcga tcgttttgaa tggcgtggtt tgggttttat tccatccagc gcattaaaga
     7381 tcaaagagtc tttttctgag tttgatgctg aacagcgttt cgaattaccg gagagtgcag
     7441 cgcaggaaca taagcaatgt ctttgtggtg aggtattaag aggagtaaaa aaaccaactg
     7501 attgcaaatt atttgccaag gcttgcttgc cagaaaatcc tttaggatcc tgtatggttt
     7561 catcggaggg agcttgtgca gcagtttatg cttatggacg ggttaatgct ttatgaatga
     7621 aatcctgata actaaaaaat taacggggcc aaagctgaat tttaaagaag gcactatcaa
     7681 tttgacccat ggcagtggtg gacgtgctat ggctcagcta attgaacaat tatttttaac
     7741 cgcatttgat aatgaatggt tggcacagaa aaatgatcag gcttgcttta ttgttccttc
     7801 aggacgtatg gtcatggcaa ccgatgctca tgttatttcc ccactttttt tccctggcgg
     7861 ggacattggt tctttgtcag tgcatggaac tgttaatgat gtggctatgt caggggcaaa
     7921 acctttgtat ttgacagcca gctttattct tgaagagggg tttcctctta aggatttgcg
     7981 aaaaatcgtt tattccatgg ctgatgcagc caggcaagca ggtgttgcca tcattgccgg
     8041 cgatacaaaa gttgtcgaac gaggaaaagg cgatggtatt tttattacga caaccggagt
     8101 agggattgtc cctgcgggaa ttcatatttc gggtgatgca gcaaaacccg gtgacaaaat
     8161 cattgtgagc ggttttatag gggaccatgg ggtagctatt atggcgcacc gcaataacct
     8221 ggaatttcag accaaagtgc agtctgacac agcctctttg catgggcttg tcggcgagat
     8281 ggtgaaagca gttccagaac ttcattgctt gcgtgatcca acgcgtggag ggcttgcaac
     8341 gacactgaat gaattggcct tacaatccaa agtcgggttt gttattgatg aaagtaaaat
     8401 tccgattcgt accgaggttg ctagcgcgtg cgaattatta ggtcttgatc ctctttatgt
     8461 tgctaatgaa ggaaaattaa tagcagtttg cccttctgaa aaggcagaga ggctattaac
     8521 tgctatgaaa gcgcacccct tgggtttaca tgctgaaatc attggtgagg tgattgaaga
     8581 tcatcgctat tttgttcagc tgaaaacaaa attgggcggg ttgcgaattg tggattggct
     8641 ggccggagag caattgccca gaatctgtta ataagtaata acgatcgaca agaaaggacg
     8701 accaggatga acgacaagag gaactgtttt ttgcctcatg ataaattgca acatttaatt
     8761 gactctttgc aaaatgctgg atactcctgt gtggggcctc aagtgcgtga tggtgcgatt
     8821 gtttatgatg tcctgaccag ggctgagcaa ttaccatggg gtatgcgtga tcatcaagaa
     8881 ccaggtggct atcgattgga acaaattccc gaacgcaaag cttttgcatt tgccaatggc
     8941 cctcaaggaa taaagcctct attgtttaag ccacaggaaa ctgtttggag ggttgagcgt
     9001 gatgaacaag gaaaattgtg ctttaaacca catcagccag atgaaacacc tgttgccatt
     9061 atcggttctc gcgcttgtga tttagcggcg atgagcattc aagataaagt ttttatagaa
     9121 aataataagc cggatcctcg ttacaaaaga aggcgcgagc aattatttgt tgttgcagtg
     9181 aattgcacct attcctctgc gaattgtttt tgtgtttctg ctggaactgg ccctgcagtg
     9241 aacaattcgt ttgatattct tatgacggaa attgaagatg gatttgttgt ggaagcaggt
     9301 agtgataaag gcaaaaagat tatgaatcaa ctggatttac atgatgcaaa aagtgctcaa
     9361 tgtactgatg cccaaaataa tgtgaaacaa gccgctgcct tgcaaaccaa gaggattcct
     9421 ctggacaata aaagggattt acgagatttg ctgttttcga atttaaatca cacccgttgg
     9481 gatgacgtgg ccgaacgatg tttatcctgt ggtaattgta ctttggtatg cccaacctgt
     9541 ttttgtcata gtgaagttga aaagccaggc ctggatggtt gtaccagtga acaccataga
     9601 gagtgggact cctgttttac gacgggtcat acttatctca atgggaaaat tattcgtgat
     9661 gacacaaaaa agcaatacag gcaatggtta actcacaagg taggaagctg gtttgatcaa
     9721 tttgatacaa gcggctgtgt tggatgtgga cgttgtgtga cctggtgtcc tgtgggaatt
     9781 gatataaccg aagagttggc agcaatttca ggcgagtcca atgcaaggaa aatagaaaat
     9841 gaatgaagta gtctatgatc cttatttacc aaaagaagtt gaaattattc aacgtacaca
     9901 ggagtcgtct tcaattttta ctctgcactt ccgctttact gatgaagaac atcataagca
     9961 atttcaattt tatcctggtc aattcaatat gctatacctt tatggggtcg gtgaagtggc
    10021 tatttctatt gtttcagatc ccagaaagaa aacttttcta agtcacacta ttcgagcggt
    10081 agggcgggta accaaagcca tgcaaaaact gcaggttggt gatcgtcttg gaatacgagg
    10141 tccttttgga gtaggctggc cactacaaaa aacgataggt aaagacatta ttgttctaac
    10201 cgggggattg ggttgtgctc catctgtttc cattatcaat tatattttag gaagacgacg
    10261 tcattacggt aagctcagta ttttgcaggg agtaaaacac agcgaggatt ttatttttag
    10321 aaagcagtat gccaaatggc aaaaatcaga tcatactgaa gtttatatag ccgcagatca
    10381 agctggtcct aaatggcctt ggggtgttgg ttatgtgact gacttgattg accacatcat
    10441 tatacaacca gataactctg tggtgatgat gtgtgggcct gaaatgatga tgaatacagc
    10501 cgttaaagtg tttacccaaa aagggattct tgaaaacgac atctacctca gtatggagag
    10561 aaacatggaa tgtggaattg gtcattgtgg tcattgtcaa tacggtggtt tattcgtgtg
    10621 taaagatggt cctgtatttg cttattctca agttaaagag ttattcaaag aatctggatt
    10681 ttaaagtgtc tgaggaacgc tatgaaaccg cgtatcgctg tatataaatt tacttcttgt
    10741 gatggatgtc aattggcatt tttaaatgcg ggtgaatcgt tgttaacttt atcagacttg
    10801 gttgaaattg tgcattttgc agaggcaggt atggtggatg tggatatgaa agtggatatc
    10861 gcatttgtgg aaggcagtat ttcaactcct gatgaagagc atcgaatacg taaaattcgt
    10921 gaaaacagtc aataccttat taccataggt gcttgcgcta cagcgggcgg tatacaagcc
    10981 ttacgtaatt ttgcagactc cagggaatgg atggccagtg tttatgcgtc accggattat
    11041 atcaagactt taactacatc cacggctatt gcgcatcacg ttaaagtgga ttgggagtta
    11101 tgggggtgtc ctgtaaatag cgggcagata ttggaggcga ttcgtttttt attatctaat
    11161 gcgactccca aaataaaaag agattctgaa tgtatggagt gcaaacgaaa agggaatgtg
    11221 tgtgtgctgg tgaccaaaaa acaaccttgt atggggccag taactcaaac aggctgtggg
    11281 tcgctttgcc ccactttagg cagagcatgc tatgcttgtt atgggccaaa agaaaatgct
    11341 aatcccaatt ctttgggaga gtggttttta tctatcggat taaccaaaga agcgattgcc
    11401 aggcagtttt tacatattaa taatcaggca cctgcattta atcaagccgg aaattacttt
    11461 aagggaatta aaattagcaa tgggtaaaga catttcaatt aatgttccaa ttttggcgcg
    11521 ggtggaagga gagggggctc ttgaactttg cattcgggat agcaaaattg aaacattaaa
    11581 attaaaaatt tatgaacccc caagattatt tgagaaattt ctggagggtc gaagttacaa
    11641 tgaagtgttg gattttgtag cccgtatttg tggtatatgc cctgttgctt atcaaatgag
    11701 tgctacccag gctatagaac aatgttttaa cctaagtccc actccttggg ttcgcgatat
    11761 gcgtcgcctg ttttattgtg gcgaatggct ggaaagtcat agtttgcacg tctatttttt
    11821 ggctttacct gattttttag gatttcaatc agcacctgaa atggcaagga aatatccaga
    11881 ggaggtgaaa tgcgggttgc ggattcaggc ttttggtaat gatttgatta aattgttagg
    11941 ggggcgttcc gttcatccag taggagcttg cgtaggtggt ttttataaag cgccttccca
    12001 tccgcaaatc aaattaatat tagacaaggc aaaagaacgg atctcggatt gcgaagcgtt
    12061 aattcattgg cttgcgagct tatccttacc cgataattct catgatttta ccagtgtttc
    12121 gctttatcac cctactgaat atcctatgaa tgagggaagg attgtttcag atcgtggatt
    12181 aaatataacc aaagaagaat ttgatgctta tttcaaagag catcatgtgg attactccaa
    12241 tgcattgcac tgtttattgc aaaataaacc ttatttagta ggtcctctgg cccgtattaa
    12301 taattgtttt gggcatttgc cagcacccat tcatcttctt ttacaaagct tgaatattca
    12361 atttccttcg cggaatatgt gccatagtat tattgctcga gcagtggaga tgtactactg
    12421 tgttttggaa gctatccgca ttctggaaca atatgacttg ccagagcaat ctcgtcctga
    12481 aatcaaacct caggcaggag aaggagcagg ttgtaccgag gctcccagag gtatgctgtg
    12541 gcagcattat gtttttgatg aaaccggcca ggttttacaa gcgcgtattg ttcctcccac
    12601 cagccaaaat caggcgcgta ttgaggaaga tttaaagcat tctttaatac aatttggcct
    12661 taatcaggag gaagaagcga tcaggtattt tagtgagatg atcattcgta attatgatcc
    12721 gtgtatttca tgctctacac attttctgaa tttaaaaatc gatagaatat gaatcttata
    12781 aaaatattag gcataggctc accttttggt gatgatcaag taggatattt gcttgccgat
    12841 tgtcttaaga cagaattgtc caaagatcaa tacattagta aactggtgag catagagtct
    12901 cacgatcggc ctggtcttcg tttgattgaa gtgatgaatc cagccaaagt cgttttttta
    12961 attgatgctg taaagtccgg atgcgccata ggtacaatcc atcgcttaaa aaataacgag
    13021 atttttgcat ttcaaaatag attatcgacc catgaaatag gggttgtaga agcactacaa
    13081 ataggtcaaa gtcttaatgc tttgccagag gatatcattt tatacgggat tgaaattgat
    13141 agcattgctt ttaatgcgac gctgtccaaa tcagttgaaa aagcaatgaa ggtcgttgtt
    13201 atccaaataa aaaaggaact caaggatatg ttaaatcata tcgtatgagt ttcttttcat
    13261 aatgaactta taatacttaa atagtaagac tcgagttagt tgcagcctta attttatctg
    13321 cagtccaaag gtttagcgtt gaatgaatat ccgagcctgc tgggttgtga atataacgaa
    13381 taattttagt ttctaattcc tctataacat cagttgctaa tctggaaccc agtatttctc
    13441 tcatatccgg attttctaat tcttttaaaa gcaattctgt aattttatta gcaagtaatg
    13501 ctttcgacgg gaaatccaga tagccaacta agtactgagt cattaggggt gttttactat
    13561 cagagactag agcagaaaga ataattagag agataaaatg attattttgg tattttgcga
    13621 tgagattttt ataaagagtc gctttttcta tatttttatc agctcctgtg aagaaaccat
    13681 atataccaag aaaacctttg ttttcatttt cattcttgat gtatgaaagt aatccatcac
    13741 ttactccgat tgataaagca tgaattctta attgatttat tagtaactga tcaggaatga
    13801 ctaatcttcc tactgtaaaa tcatcaccaa aacgttggat ttgtcctgtt tcttttgctt
    13861 gttcaaccag ctgtttttgt ttggatttta caacttgtag caattgagaa aataaggggt
    13921 ctttgtcatc aaaatttcca ggatcgagat ttagatgtct tacaattctt ttatttattt
    13981 tcttgccatc aacagtttct acttcaaact ctttttcagt catttctaac atcggtggaa
    14041 cataagtgta tcctactagt tcatcaccgg gcatgacttt agtattaaag acagaatttc
    14101 tttcaatgac caagtcgata ttggcggatg aatagttgtc aaatgcgtct ttgaatccat
    14161 caacttccgt atgacaaact aattgttcaa ttgttccttc gtttcgtttg atagctattc
    14221 cggtgtcacc aatgccgaat ccagcacaaa acagttgttc atccttttga taagttacgc
    14281 ataaagacat agtgaactct gccaatggag catgtttgct gcgcaaagag taaatagtat
    14341 gaatgagtga ttcggtaact ttttttgaat ccgggtatct ggtgagatct aaggagaagt
    14401 tatcaattaa agggagtaca tagttatcaa taaatgaaaa aacagcctga cgttcgcatc
    14461 cataaaagcc atccaccact atttgaaaag ccattccatc tttggtatat ccaatgacta
    14521 ttttatcgtc agaatccttg tgctttataa tttctttgcc ctgttcattc aaatgtacaa
    14581 agaggctgga tgcaaagatt tcactattac ccttatctaa atcattggaa ccagattgat
    14641 agctttgtcc atgaagaaca ccattacaga tttgtgtaat aatcgaacgc atcgttactc
    14701 ctcctaaatt tacttcagat atcctgtcat tgt
//
LOCUS       DACVWI010000071        14658 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.071, whole genome shotgun sequence.
ACCESSION   DACVWI010000071 DACVWI010000000
VERSION     DACVWI010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14658
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.071"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            82..1143
                     /locus_tag="JBH85_07845"
     CDS             82..1143
                     /locus_tag="JBH85_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HAU0946112.1"
                     /translation="MNILKPNIQFEITGASRILPASGPITNLEILKNFPRTADKSQGF
                     LEKFAEKIGEEFGFHTRYWCHKPWESLDNSRELSSESLAMQAVDKLITHSMSKDVDAF
                     LLGSTTNKRFTGSQAAAVLGNLKLNAPAYDLKTGCSTSLSTLHFAYALMALGYQKILV
                     CCSETLSKVIDPENEKTWIGLADGAASLLLEKSKEGSFTIEKSFFSTDGQYVNAFTTQ
                     GVFPPTHEQIDSVGYHLVGDETLMKELAYSRYMQMLDHLLPTEKEKNEITWVIPHQVN
                     RKLIDQVLHENNLNNKIIIWDADTIGNIGGASVLYTLARAVEEKLFDRSGKILLMSVG
                     GGLSYAGQVLNYQKASYSN"
     gene            1155..2900
                     /locus_tag="JBH85_07850"
     CDS             1155..2900
                     /locus_tag="JBH85_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acyl-AMP ligase"
                     /protein_id="HAU0946113.1"
                     /translation="MKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQL
                     DQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLL
                     DKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPT
                     SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHD
                     MGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRI
                     REEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV
                     TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPC
                     DFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY
                     VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKN
                     RFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK
                     TLPIVATWQLNKIEE"
     gene            2890..4284
                     /locus_tag="JBH85_07855"
     CDS             2890..4284
                     /locus_tag="JBH85_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HAU0946114.1"
                     /translation="MRNKTMLFLAPDVPNKVAITQGNRVITFDELRHEVLANSKQLMK
                     LPKTIIVLHATPEIGFIIQLLACLETNRPIALFPNSISEEEKQRRLSLLGNAVMINEE
                     GELQEICENKTIQPHPQTALILFTSGSTGAVKAVQLSSINIKANCHAVIKALEFKKVQ
                     DQLLFLPLSYSFGLLGQLLPGLMFGLTTRLITHFTDIKMLMEQGTVPQMWSGVPSHWV
                     AINAIAKRYPDSAAKINAIVSAGAPLSTTLRADLKQIFPNAIIYNNYGLTEASPRVLT
                     YSSKDPLFTENYAGYPVGDWKVKLSAEHELLISGTQMMLGYLGEKDSTKIQNGWLSTG
                     DIAEILPNGLVAIKGRRDSLVNIGGEKVNLSEIEQAICQIDVIKEAIVIPQEDKIYGT
                     RLIVCIEKKSLPSSISEQNLIEKIQTHLLPRKLPIQLQLMSSLPRNQHGKLDRKALVL
                     NIDGLDNKEKNNAK"
     gene            4274..4507
                     /locus_tag="JBH85_07860"
     CDS             4274..4507
                     /locus_tag="JBH85_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAU0946115.1"
                     /translation="MLSNRIEQVLERIGLTNLPKNKQAKLEQGGLDSLMLALLIIELE
                     REFEIKIPVIPLEKEHYESINTIEQYLIELGAK"
     gene            4504..5256
                     /locus_tag="JBH85_07865"
     CDS             4504..5256
                     /locus_tag="JBH85_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAU0946116.1"
                     /translation="MNILITGGSSDIAQAIAKRRSESGDKIIITCSNDISLNQTLAIY
                     RQQNIDVTGFIYNFSDPQACEADLELILKEPLDGIILNAFTRVTQLRKLHALPYHAVR
                     TYLDNNLNGNIWLIHRLLPALLKNKFGRLVLISSLSATAGTSRYPVYCTAKAALEGLF
                     FNLAVDYSANNILSNIVRVGLIKTSRTEQFWKNPAYQEKVIQIIPQGTMGEPTQVAEA
                     IDPLLSKTSFMTGSVVTVSGGLPLMRSEGLLS"
     gene            5253..6263
                     /locus_tag="JBH85_07870"
     CDS             5253..6263
                     /locus_tag="JBH85_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HAU0946117.1"
                     /translation="MNFFRCEKPIYIKGPFVALPERIMSNQDVLNWMNSTQNPTVIGF
                     STGIKNRHWVNEDQACSDLAVRAAEHLFMEKTREKHKVNQVILATISGDYPSPPSSPL
                     VQYRLGLQNAGAFDIGAACAGFVVGLHTSAALAQTNDGSVLLIASEIRSKFLNKNNFA
                     TSVLFGDGAAACCVSQDKEEADFRFIASALFADGEVYDAVSTPAGGSRLPAAVCNDHE
                     QFYITIKESTALFVKAVHGMADSAKDFLKELNLTISDIQWLVPHQGNKNLVLSVAKQL
                     GFPEEKTIKTVEETGNTSGSSVGIALDRLRSDGKIKSGEKVLLVAAGGGGIAACSLLE
                     VV"
     gene            complement(6606..6833)
                     /locus_tag="JBH85_07875"
     CDS             complement(6606..6833)
                     /locus_tag="JBH85_07875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAU0946118.1"
                     /translation="MKITDEELKKIISKLSGSKADEIQDDTALIEDLHLDSLKIVELL
                     AILSEEYQLEVSEEDAMNFHTYKDLYDFTQA"
     gene            complement(6843..8210)
                     /locus_tag="JBH85_07880"
     CDS             complement(6843..8210)
                     /locus_tag="JBH85_07880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HAU0946119.1"
                     /translation="MNSDRRFAIGIFYFADVEANALFSNTFVLLVNNDIVISLVRNHS
                     KGYLMHQEHPGQTDTPKIDPWLIFVILMLMALMQTTTDQYIPSLPAITTALNSTEASI
                     QLTISMFMLGLSLSHIFYGPLSDKIGRKPPLMFGVGLSILGSLVCFVAPNVSVLILGR
                     FLQGFGIGCCNSVGRSLVRDLFTDRLLAKIGSYVGVVSIFIMAASPTLGGFIQEMAGW
                     KANFMFLFVFGILVWLLAFCILPETNKHLNPEATKIKVMAKNYFTLLRSKIFVGYTMC
                     ACFAFAGMVSYLTIAPFLFQNTMGLSPLEFGRLTFFIAGAICFSGIVNSQLVMRKGIS
                     FMVCTGVLFMIVGGLSLLLITILGWSQIYFIMISMTLFSAGAGFTFINAFAGAFHPFP
                     QMAGTVGALYASMQDLSAALTSGFIAGIKGYGQYSLAIILLILGLSSLVAWYYLGLQD
                     DAISN"
     gene            8220..9422
                     /locus_tag="JBH85_07885"
     CDS             8220..9422
                     /locus_tag="JBH85_07885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HAU0946120.1"
                     /translation="MDINLMVFASPLFLILIGIETWVAYYKKSGVYQLNDSVNNFSSG
                     ILEEIGALPIKGLIIYSYYYLYEHYAIFNVNTQSIFSWLLLWIGVDFFYYWYHRVSHR
                     NSFFWIGHSVHHQSEHFNLSVALRQGYFQTLTSWVFYLPLALIGFPTWMFVIVASVNT
                     IYQFWIHTESIRKMGWFEKIFNTPSHHRVHHGKNPQYIDKNYAGSLIIWDKLFGTFEP
                     EEAPADYGVTEPLDSWNPFYANIKVVKDILYYGKGLKSKWDVLRAFFMPPEWIIHRLQ
                     QEKSPLSKKTTIKKNTTSPGIYMLTNTAFAVLLYTYLSLVFDPAMVTSWLIGALILLT
                     LYTLGRIADGHSNTLYLEISRATLVLLILLLFKNTLLLSLGCSVLFYVINYALCTTFP
                     YKRTASSF"
     gene            9509..11917
                     /locus_tag="JBH85_07890"
     CDS             9509..11917
                     /locus_tag="JBH85_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase subunit B"
                     /protein_id="HAU0946121.1"
                     /translation="MFLVKILFIINAELNHSAKDSLMHTIANETPVQKDHSFDPITNV
                     LKWVLLVTAILCFLILIWGTVKTYQLVPPLPDRFVTSTGETVMTSQDIVEGKAGFQRA
                     DLMDYGSLYGMGSYFGEDYTAKYLVRLGELVQEELAKIRFNKAYSELTESEQFVINKE
                     MQNSLQRLNLNKKTSILTPAIATSIRQLQAEISQSLLNHNFMAGYTQAYSLNPDTALQ
                     TANFLIYSSLTTIARRPNQNISYTNNWPYEPSVGNTPSSGTFYWTWISFCFVFMGFGA
                     VLYIYHRYLSDVDHGPMEPIFSGFKPLTQSQRKVGQYFLVAALFLLLQIAVGAIMAHY
                     YAERESFYSINVNTWLPFNFLRDVHIQTPIIWIGLSWISAGIFMAPIISGKEAKGQGF
                     LVDFLFYVTLLVVGGAILGNYLGIMGYIDKTWFWLGNQGLSYIQLGRLWQIGFCIGLF
                     LWSFIVFRGMWPTWEGLKNATIEFWTGRIKLENLFWASTINVAVLYCFGMIPLTGIEK
                     SFTITDFWRWWVVHLWVEQSFEFFAACATAYVLMGTGLVSRKAAERTVFFESILIFLG
                     GVIGTGHHWYWTGTPEIWIPLGSMFSFIEVLPLVLLIIDAIQHRQLIKRQGMFTYNLA
                     YLYILGAAFWNFVGAGVFGGGTLNAPLINYYEHGTFLTLNHAHTALFGAFGLLALGLI
                     YFCLRYAAGESKAWSDRLGVYAFWLYNAGLFLWIVLNFFPIGWSQLMAVYEHGLSYAR
                     SLEFYNTTLLWQWLRFPGDVVFALGALLMAYDFIVKIGPFFPKFARNRRFIAGPPKAT
                     DPSL"
     gene            complement(12106..13944)
                     /locus_tag="JBH85_07895"
     CDS             complement(12106..13944)
                     /locus_tag="JBH85_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0946122.1"
                     /translation="MNMSDLQQLPKTILRFSWHFIKKSPWLYALFFIAPVVMVLETNV
                     IPYALKMIIDGITNHKGGKDSIFQDIAPALYLGGVAWFGVILVLRLHNWWQAYLVPQF
                     QANIRMTLFGYLIQHSHHFFSNQLAGNLANKISDIPRSLEAIRKIVSCNVNTTFAAIV
                     VSIVLMLTINPWFAFILLSWIIIQLFISFYSAKEINKLARVNAEDKSILKGKIVDSLN
                     NINTVKLFVQNEYEKKYVWKTQNREVQSNKRLVLFINFFRLLVDVPVSIMLIAMIYSV
                     ISFWQRNLISTGDVVFIFATSFAIMNQMWSLSNSLCDLFVEIGIVKQALAILSQPIEV
                     QDIANAKELKVTHGEIRFENVTFRHRDGQVLFTNKSLVIPAKQKVGLVGYSGGGKTTF
                     INLILRYFDVDSGRILIDNQDISEITQYSLRKSISMIPQDTNLFHRTLLENIQYGKED
                     ADRDEVVTAASLANCMDFIQNLPQGFNTIVGERGTKLSGGQRQRIAIARAFLHHTPIL
                     ILDEATSQLDSLTEECIQESLQPLCEGKTTIVVAHRLSTLLNMDRILVFDKGAIVEDG
                     THQELIENNGLYKSMWDAQTSGFLPVEQEDETELAKEFDRPYLAQV"
     gene            complement(14103..14489)
                     /locus_tag="JBH85_07900"
     CDS             complement(14103..14489)
                     /locus_tag="JBH85_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HAU0946123.1"
                     /translation="MYTIIVCLFIAILLPYLAKVPVAYAMHKAGGYNNRYPREQQARL
                     QGFGARALAAHQNAFESLLIFATASLTALATNSVTLMTQYFAIAYIISRLFYHLFYLL
                     NWSSLRSTVWFLGVICCLSILWLSIP"
BASE COUNT         4571 a         2943 c         2836 g         4308 t
ORIGIN      
        1 attcttgatc tggcaggata gaaagagtgt aatttcaata attgtaacct ctatgcgctc
       61 cagacaagat aaggccactt tatgaatatc ttaaaaccta acatacaatt tgaaattact
      121 ggcgcatcaa ggattctgcc tgcatcaggc cctatcacaa acctggaaat tttaaagaat
      181 tttccgagaa ctgcagataa gtctcaaggt tttctcgaaa aattcgcaga aaaaataggc
      241 gaagaatttg gctttcatac tcgatactgg tgccacaaac cttgggaatc actcgataat
      301 tcaagagaac tgtcttccga atcactagct atgcaagcag tagataaact gataacccac
      361 agtatgtcaa aagatgtcga cgcatttctc ttaggctcga caactaataa acgctttacg
      421 ggatctcaag cggctgctgt acttggaaac ctgaagttga atgcgcccgc ttacgattta
      481 aaaaccggtt gctccacttc tttatcgacc ttgcattttg cctacgcatt gatggctttg
      541 ggttatcaaa aaatattggt ttgttgctct gaaacacttt ccaaagtgat tgaccctgag
      601 aatgaaaaaa cctggatagg tttggctgat ggagctgcct ccttactttt agaaaaaagc
      661 aaggaggggt cttttaccat tgaaaagagt tttttttcta ctgatggtca atacgtcaac
      721 gcatttacga ctcaaggggt attcccgcca actcatgagc aaatcgattc ggttggttat
      781 catctggtgg gtgatgaaac cctaatgaaa gaattagcct attccagata catgcaaatg
      841 cttgatcatt tattgccaac agaaaaggaa aaaaacgaga taacatgggt aatcccccat
      901 caggtcaatc gaaaattaat agaccaagta cttcatgaaa ataatttaaa caacaaaata
      961 ataatctggg atgctgatac gataggcaat ataggtggcg catcagttct ctacacatta
     1021 gcaagggcag ttgaggaaaa attgtttgac agatcaggga aaattctcct gatgagtgtt
     1081 ggtggtggtc tatcctatgc gggacaagtc ctaaactatc aaaaagcatc atatagcaat
     1141 taaggtgttt tatagtgaaa aaagaatatt tgcagtgcca gtctctggtt gacgtcgtca
     1201 ggttacgtgc tttacacagc cctaacaaga aaagctgtac ttttctgaac aaagagttgg
     1261 aagagacgat gacttatgag caactggatc aacacgccaa agcaattgcg gcaactttgc
     1321 aagcagaagg agcaaaacct ggggataggg tcttgttatt gtttgcacct ggattacccc
     1381 ttatccaggc atttttgggc tgcctttatg caggctgcat tgctgtaccc atttacccac
     1441 cagcccaaga aaaattattg gacaaggcac aacgcatagt taccaactca aaaccggtca
     1501 tagtactgat gattgcggat cacatcaaaa aattcaccgc agacgaatta aatacaaatc
     1561 ccaaattcct gaaaattcct gctattgcgc ttgagagcat tgagttaaac agaagtagta
     1621 gttggcaacc aacctccatt aagagcaatg acattgcgtt tctgcaatac acttccggct
     1681 caaccatgca ccctaaagga gtgatggtaa gccaccataa tttactggat aatctgaata
     1741 aaatttttac ctcttttcat atgaatgatg aaaccattat tttcagctgg ctgcccccac
     1801 atcatgatat gggtttgatt ggctgcattc tgacccccat ctatggtgga attcaggcaa
     1861 tcatgatgtc ccctttctca tttttacaaa acccgctttc ctggttaaaa catattacca
     1921 aatacaaagc aactatcagt ggaagcccta acttcgctta cgattattgt gtcaaacgaa
     1981 tcagggaaga aaaaaaagaa gggctggatt taagttcatg ggtgactgct ttcaacggtg
     2041 ctgagccagt acgagaagaa accatggaac atttttatca ggcatttaaa gagtttggat
     2101 ttcgtaaaga agccttctat ccatgctatg gcctggctga ggccactttg ttagtgacgg
     2161 gaggaacacc aggaagttca tacaaaacat taactctggc caaagaacaa tttcaagatc
     2221 atcgcgtgca ttttgcagac gataacagtc caggcagtta caagttagtc agcagtggta
     2281 atcccattca agaagttaaa attatagatc ctgatacctt gatcccatgt gattttgacc
     2341 aggttggtga aatttgggta caaagtaaca gtgtcgccaa aggatattgg aatcaacccg
     2401 aagaaacaag gcatgcgttc gcaggaaaaa ttaaagacga tgagcgtagc gcaatctatt
     2461 taagaaccgg ggacttgggc tttctccatg aaaatgagtt atacgttact ggacgcatta
     2521 aagacttaat tattatttat ggtaaaaatc attatcctca ggacatagag ttcagcctga
     2581 tgcattctcc gctccatcac gtattgggca aatgcgctgc ttttgtgatt caggaggagc
     2641 atgaatataa actgactgtg atgtgtgaag taaaaaatcg attcatggat gacgtagctc
     2701 aagacaattt attcaatgag atttttgagc ttgtttacga aaaccaccaa ttggaggtac
     2761 atactatagt cctgattcct cttaaagcaa tgccacatac taccagcgga aaaattcgca
     2821 ggaatttttg tcgaaaacat cttttggata aaactctgcc aatagtggct acctggcaac
     2881 tcaataaaat tgaggaataa aaccatgctg tttttggcac cagatgttcc aaataaagta
     2941 gcaatcactc agggcaatcg agtaataacc tttgatgaat taaggcatga agttttagca
     3001 aattcaaagc aactcatgaa acttccaaaa accatcattg tcctccatgc aacacctgag
     3061 attggattta ttattcaact attggcctgt ttggaaacaa atcgccccat tgcccttttc
     3121 cccaattcca tttcagagga agaaaagcaa agacggcttt ctcttttagg taatgccgta
     3181 atgataaatg aagaagggga attgcaggaa atatgtgaaa ataagacgat ccagccccat
     3241 ccccagacag cacttattct cttcacctca ggaagcacag gagcagtcaa agcagttcaa
     3301 ctatcaagca tcaacataaa agccaactgc catgcggtca taaaggcgct ggaatttaaa
     3361 aaagttcaag atcaattgct ctttttacct ttatcctatt cttttggcct tctgggccaa
     3421 ttgctccctg gtttaatgtt tggcctgacc actcgactaa tcactcattt tacagacatt
     3481 aaaatgctaa tggagcaagg taccgttcct caaatgtgga gtggcgtacc ttctcactgg
     3541 gtagctatca atgccatagc aaaacgatac cctgatagcg cagccaaaat taacgcgatt
     3601 gtttctgctg gcgctccttt atccactaca ctcagagcgg atttgaaaca aatatttcct
     3661 aacgctatca tctataacaa ttacggttta actgaagcat ctccgagagt gctgacttat
     3721 tccagtaagg atcctttatt cacagaaaat tatgcaggtt atcctgttgg cgattggaag
     3781 gtcaaacttt ctgctgaaca tgaattatta attagcggca ctcaaatgat gctgggttat
     3841 cttggtgaaa aagacagtac taaaatacaa aatggctggt tatcaacagg agatattgcg
     3901 gaaatattac ccaatgggtt agttgcaatc aaaggacgtc gagacagtct tgttaatatt
     3961 gggggagaaa aagttaacct ctctgagatc gagcaagcaa tttgccaaat tgatgtaata
     4021 aaagaggcca ttgttatccc tcaggaagac aagatatatg ggacacgatt aattgtctgt
     4081 atcgaaaaaa aatcgctgcc ttcttccatt tctgaacaaa atttaataga aaaaatacaa
     4141 acgcatctac tacccaggaa attgcctatt caattacagc tcatgtcatc cctacccaga
     4201 aatcaacatg ggaagcttga tagaaaagcg ttggttttga atattgatgg tttagataat
     4261 aaggaaaaaa ataatgctaa gtaatcgaat tgaacaagta ctggaacgaa ttggtcttac
     4321 caatcttcct aaaaacaaac aggcaaaact tgagcaaggg ggcttggata gtttgatgct
     4381 ggccttgtta atcattgagt tggaacgtga atttgaaatt aaaatccctg tcattccact
     4441 cgagaaagaa cattacgaat cgatcaatac tattgaacaa tacctcattg agctgggggc
     4501 aaaatgaata tccttattac tggcggctcc tctgatattg cccaagccat agcgaaacga
     4561 cgcagtgaat caggcgataa gatcatcatt acctgctcta atgacatcag tcttaatcaa
     4621 actctcgcaa tataccgcca acagaacatt gacgtgacgg gtttcattta taacttttca
     4681 gatcctcaag cttgtgaggc cgatttggaa ttgattttaa aagaaccact cgatggcatc
     4741 atattaaatg cgttcactcg ggtcacccaa ctgcgtaaat tacatgcatt gccctatcac
     4801 gctgttcgta cttacctgga taacaatctc aatggcaaca tttggcttat tcatcgttta
     4861 ttacctgcct tgctaaaaaa taaatttggg cgactagtcc tcatttcaag tctttcagca
     4921 acagctggca ccagtcgata tccggtttat tgtacggcaa aggctgctct agaaggatta
     4981 ttttttaatt tggctgttga ttatagtgct aacaatatct tgtctaatat agtacgcgta
     5041 ggcttaatta aaacctccag aacagagcaa ttttggaaaa atccagccta tcaagaaaaa
     5101 gtaatacaaa ttattccaca gggcactatg ggtgaaccaa ctcaagttgc ggaagccatt
     5161 gatccacttt tgtcaaaaac ctcgtttatg acgggatcag ttgtaacagt cagtggtggt
     5221 ctgcctttaa tgcgttcaga aggattgttg tcatgaattt tttccgttgt gaaaaaccca
     5281 tctatataaa aggccctttt gttgcgcttc ccgagagaat catgagcaac caagatgttc
     5341 tcaattggat gaacagtacc caaaatccaa ccgtgattgg attttcaact ggaattaaaa
     5401 accggcattg ggtaaatgag gatcaagcct gtagcgatct ggctgtgcga gcggcagaac
     5461 atttgtttat ggaaaaaacg agggaaaaac ataaagtgaa ccaagtgatc ctggccacta
     5521 tctcagggga ttacccctcc ccgccaagca gtcctctcgt acaatacaga cttggcctac
     5581 aaaacgcagg ggcttttgat ataggggctg cctgtgccgg atttgttgtc ggtttgcata
     5641 ccagtgctgc tttagcacag accaatgatg gttcggtatt gctcatagct agcgaaattc
     5701 gctccaaatt cttaaataaa aacaattttg caaccagtgt cttattcggt gatggagcag
     5761 cagcatgttg tgtttctcaa gataaagaag aagctgattt tcgctttata gcgtctgcgt
     5821 tgtttgctga cggtgaagta tacgatgccg tctcaactcc ggcaggaggt tcccgcttgc
     5881 ccgccgcggt ttgcaatgat catgagcaat tttacattac cataaaagaa agtactgctt
     5941 tatttgtaaa agcagtgcat ggaatggcag atagcgccaa agattttcta aaagaattaa
     6001 atctgacaat ctctgatatc caatggcttg ttcctcatca gggaaataaa aatctggttt
     6061 tgtcggtagc aaaacaatta ggttttcctg aagaaaaaac gataaaaact gttgaagaaa
     6121 caggaaatac ttcaggatcc agtgtaggca ttgctttgga tcgactgagg tcggatggca
     6181 aaataaaatc tggagaaaag gtacttttgg tggcagcagg tggaggagga attgcagcct
     6241 gttctttatt ggaagttgtc tgatttggct tcaggaattg tttgggtcga gacttgcgaa
     6301 aaaccccatg gtcaagggaa acgattagca aattctaatt taacaaattc aattttatat
     6361 aaaaataaat aagataatct ttgaaatttt ttcgataatc ccttgtcctt gttcgtttgg
     6421 gctgaggagg cgtttacgcc gtctcgaagc ctttacgaaa aaaataacaa ggcttcgaga
     6481 cagcgcttaa gcgcttcctc agcccgaacg gatagttgat ctatacgaat aagcaatttt
     6541 agattggcgg ccctggatca aaatgcccca actcttacta caaaaaatgg aataactggc
     6601 aacaatcaag cttgcgtaaa atcatacaaa tctttataag tatgaaaatt catcgcgtct
     6661 tcttcactga cctctaattg atattcttca ctgaggatag ccaaaagctc aacaattttt
     6721 aaagaatcca aatgcaaatc ttctattagg gccgtatcat cttgaatttc atcggcttta
     6781 gagccagata atttgctgat aatttttttc aattcttcat cggtaatttt cattaatacc
     6841 ccttaatttg aaatagcgtc atcttgcaat ccaagataat accatgccac taaagaactt
     6901 aaacctaaaa tcagtaatat tatagctaaa gaatattgac catacccctt aattcccgca
     6961 ataaaaccac tggtcaatgc tgcacttaaa tcctgcatgc tggcatataa agccccaacc
     7021 gttccagcca tttgcggaaa aggatgaaac gcaccggcaa aggcattaat aaatgtaaat
     7081 ccggcgccag cactaaataa tgtcattgaa atcataataa aatagatttg tgaccaaccc
     7141 agtatcgtaa ttaataacag gcttaaacca ccgacaatca taaaaagaac accggtacaa
     7201 accataaagg atattccttt acgcatgacc aactgactgt tgacaatccc gctaaaacag
     7261 atggcgcccg caataaaaaa agttaaacgt ccaaattcca agggactcaa tcccatggta
     7321 ttttgaaata aaaatggcgc aatcgtaaga taagaaacca ttcccgcaaa agcaaagcaa
     7381 gcacacattg tatatcccac aaagatcttg ctacgtaata aggtgaaata attcttcgcc
     7441 atcactttga tttttgtagc ttcaggattt aagtgtttat tcgtttcagg aagaatacaa
     7501 aatgctaaaa gccaaacaag gattccaaaa acaaataaga acataaaatt ggctttccac
     7561 ccagccatct cctgaataaa tcctcctaaa gtgggtgagg ctgccataat aaaaatactg
     7621 acaacaccga cataagaacc aattttagcc agcaaacgat cggtgaataa atctctcact
     7681 aaagatcgcc ccactgaatt gcaacaccca attccaaacc cctgaagaaa tcgacccaag
     7741 attaacacac tgacattggg cgcaacaaaa caaaccaaac tacctaatat acttagccca
     7801 acaccgaaca ttaacggagg tttgcgtcct attttatctg acaaggggcc ataaaagata
     7861 tgagataggc ttaaacccaa cataaacata gaaatggtta actgaataga cgcctcagtg
     7921 ctgttcaatg ctgtggtaat cgctggaaga gaaggaatgt attgatcggt tgttgtttgc
     7981 atcaaagcca tcaacattaa tatgacaaat attaaccaag gatctatttt tggggtatcg
     8041 gtttggcctg gatgttcctg atgcatcaaa tatcctttag aatgatttct aacaaggctg
     8101 ataacaatat cattatttac aagcaaaaca aaagtattag aaaataaggc attggcctca
     8161 acgtctgcaa aatagaaaat acctattgca aagcgtctat cactgttcaa aggatattta
     8221 tggatataaa tttaatggtt tttgcctcac ctcttttttt gatcctcata ggaattgaaa
     8281 cttgggtagc ctattataaa aaatccggtg tctatcaact gaatgattcg gtcaacaatt
     8341 tcagcagcgg tatccttgaa gaaattggcg cactccccat caagggcctg attatttata
     8401 gttactatta tttatatgag cattacgcta tttttaatgt gaatactcaa tcgatttttt
     8461 cctggttact tttatggatc ggggttgatt ttttctatta ctggtaccac agagtaagcc
     8521 acagaaacag tttcttctgg ataggtcatt cggtccatca ccaaagtgag cactttaact
     8581 tatctgttgc cttaagacag ggctatttcc agacattaac ttcctgggtg ttttatttgc
     8641 ccttggctct gattggtttt ccaacctgga tgtttgtcat tgtcgcctct gtcaatacca
     8701 tctatcaatt ctggattcat actgaatcca ttcggaaaat gggttggttt gaaaaaatat
     8761 ttaatactcc gtctcatcac agagttcatc atggcaaaaa ccctcaatac atagataaaa
     8821 attatgcggg aagcctgatt atctgggata aactgttcgg cacttttgaa ccagaagaag
     8881 cgccggctga ttatggagtc accgaacccc tggattcatg gaaccctttt tacgccaaca
     8941 tcaaagtggt taaagatatc ctgtattatg gtaaagggct aaaaagtaaa tgggatgtgt
     9001 tacgcgcgtt ctttatgccg ccagaatgga tcattcatcg cttgcaacaa gaaaaatccc
     9061 ctctctcaaa aaaaacaacg attaaaaaaa atacgacctc acctgggatt tatatgttaa
     9121 ccaatactgc atttgcagtg ttattatata cttatctctc tcttgttttt gatcccgcca
     9181 tggtcacatc ctggctgatt ggcgcattaa ttttattgac actttatacc cttggccgaa
     9241 ttgcagatgg ccatagcaat actctttacc tggaaatatc gcgcgcaaca ttggtacttt
     9301 taatattatt gctatttaaa aatactctgt tattgtcgct cggttgcagt gttttgtttt
     9361 atgtcatcaa ttatgcctta tgcactactt ttccttataa aagaaccgca tcttctttct
     9421 gagaagcaga cactattcaa caaggattaa ccctgtgggt actggagatg tatggttttc
     9481 taagagtcag ttttgtagct aacatgaatt gtttcttgta aagatcctct ttataatcaa
     9541 tgccgaattg aaccattccg ctaaggatag cctgatgcat actattgcaa atgaaacacc
     9601 tgttcaaaag gatcactcat ttgacccaat aactaatgtt ttaaaatggg ttttactagt
     9661 cactgccatt ctttgttttc taatcctcat ctggggcact gttaaaacct atcaattggt
     9721 acctccttta ccagaccgtt ttgtgacctc tacaggcgaa acggtgatga catcacaaga
     9781 catcgtggaa ggaaaagcag gttttcaacg cgctgactta atggactatg gcagtttata
     9841 cggtatggga tcctattttg gtgaggacta cacggcaaaa tatctggtgc gtttgggaga
     9901 attggttcag gaagaattgg caaaaattcg ttttaataaa gcctattctg aattaacaga
     9961 aagtgaacaa ttcgttatta ataaagaaat gcagaactca ctgcagcgcc ttaatctcaa
    10021 taaaaaaacg agcatcctga caccggcaat tgccacctca atacggcaat tacaggctga
    10081 aatcagtcaa tcgttattga atcataattt tatggcgggt tatacccagg cctatagctt
    10141 aaatcctgat accgcgcttc aaaccgcaaa ctttcttatt tattcctctt taacaacgat
    10201 agctcgccgc ccaaatcaaa acatatctta caccaataat tggccatacg agccaagcgt
    10261 tggcaatacc ccttcatcag ggacgtttta ttggacctgg atttcatttt gctttgtgtt
    10321 tatgggattt ggtgcggttc tctacattta tcatcgctat ttaagtgatg ttgatcatgg
    10381 acccatggaa cctatttttt caggtttcaa acccctaact caaagccagc gtaaagtagg
    10441 tcaatatttc cttgtagccg cgttgtttct tttgctgcaa atcgcggtcg gagccatcat
    10501 ggctcattat tatgctgagc gcgaaagctt ctatagtatt aatgtcaata cttggctgcc
    10561 ttttaatttc cttcgagacg tccatatcca gactcccatt atctggattg ggctttcatg
    10621 gataagtgca ggcatattta tggcacccat cattagcggt aaggaagcca aaggacaggg
    10681 atttttagtt gacttcctgt tttatgtcac cttgctcgta gtgggtggag ccatccttgg
    10741 caattacctg gggattatgg ggtatattga taaaacctgg ttttggttgg gcaatcaagg
    10801 tttgtcttac atacaattag gaagactgtg gcaaatcggg ttttgcattg gattgtttct
    10861 ttggagcttc attgttttcc gcggcatgtg gcctacgtgg gaaggattaa aaaatgccac
    10921 cattgagttc tggacaggtc gaatcaaact tgaaaacctg ttctgggcca gcactatcaa
    10981 tgtcgctgtt ttatattgct ttgggatgat ccccttaaca ggaattgaaa aatcattcac
    11041 cataacggat ttctggcgtt ggtgggttgt gcatctatgg gttgaacaat cctttgagtt
    11101 ttttgctgct tgtgccaccg cctacgtact tatgggaact ggtttggttt ccagaaaagc
    11161 cgcagagaga acagtattct ttgaatccat tttaatcttc ctaggtgggg taataggtac
    11221 tggtcatcat tggtactgga caggtactcc cgaaatttgg attccgctag gttccatgtt
    11281 ttcttttatc gaagtcttgc cactggttct tcttattatt gatgcgattc agcatcgaca
    11341 attaattaaa aggcagggga tgtttaccta caatcttgct tatctttaca tattgggagc
    11401 tgcgttctgg aattttgttg gtgccggtgt gttcggtgga ggtacactta atgcgccact
    11461 gattaattac tacgagcatg gaacattctt gactttaaat catgcccaca ctgctttatt
    11521 tggcgcattt gggcttcttg ctctcgggtt aatctatttt tgcctgagat atgctgctgg
    11581 tgaaagcaag gcatggagtg atagattggg tgtttatgcc ttttggttat ataatgcagg
    11641 tctcttttta tggattgtcc tgaatttttt cccgatcggc tggtcacaat taatggcagt
    11701 atatgaacat ggactatcct atgccagaag tcttgagttc tataacacca cattattatg
    11761 gcaatggctt cgttttccgg gagatgtcgt atttgccttg ggagcccttc ttatggctta
    11821 tgattttatt gttaagattg gacctttttt cccgaaattt gcccgtaatc gtcgctttat
    11881 agctggccct ccaaaagcaa cagatccaag cttatgacca atgatagcaa agacaaagcc
    11941 agtgtatttt tttgaaaaat tattttgaga aaccgtgttt agaagtgaat gtcgacaccc
    12001 agatgatggg tgtcggcttg caatcaaatt caaggtaaga gatcagcctc tacctggaac
    12061 gggcgtattt ggttcatctt gaacgacaat tgttttttgg ttaaattaca cttgcgccaa
    12121 ataaggccgg tcaaattctt tagctagctc agtctcatct tcttgttcca caggcaagaa
    12181 acctgaggtt tgcgcatccc acatggattt atataatcca ttgttttcta tcaactcttg
    12241 atgtgtgcca tcttctacta ttgctccttt atcaaaaacc aggattctat ccatgttaag
    12301 gagggttgaa agccgatgtg ctacaacgat agttgttttt ccctcgcata atggttgcaa
    12361 ggattcttga atgcattctt cagttaaaga atccagttgt gaagtggctt catctaaaat
    12421 caatatagga gtatgatgca aaaacgctct tgctatagcg attctttgtc tttgcccccc
    12481 tgacaactta gtaccccttt cccctactat agtattaaaa ccctgaggca aattctgaat
    12541 aaagtccatg caatttgcta aagaagctgc tgttactact tcatccctgt cagcatcctc
    12601 tttaccatat tgaatgtttt ctaataaggt acgatggaat agattggtat cctgaggaat
    12661 catactgatt gattttctta aagaatattg cgtgatctcg ctaatgtctt gattatcaat
    12721 caatatcctt ccgctatcca catcaaaata acggagaatt agattgataa atgttgtttt
    12781 gcctcccccg gaatagccta caagcccaac tttttgttta gccgggatga ccaacgattt
    12841 attggtaaat aatacctgac catctctatg acgaaaggtc acattttcaa acctgatttc
    12901 accatgcgtg actttcaact cctttgcatt ggctatatct tgaacttcga taggttggga
    12961 taatatggca agtgcttgct tgactattcc tatttcgaca aacaaatcac aaagcgaatt
    13021 actgagactc cacatttgat tcataatggc aaatgaagta gcaaatataa aaaccacgtc
    13081 accagtgctg attaaatttc tttgccagaa gctgatgact gaataaatca tggcgattaa
    13141 cataatactg acaggaacat cgactaaaag acgaaaaaaa ttgataaaaa gaaccaggcg
    13201 cttattactt tgaacctctc tattttgtgt tttccaaacg tatttttttt catactcatt
    13261 ttggacaaat aatttcacgg tattgatatt gttcaaagaa tcaacgatct ttccctttaa
    13321 aatactttta tcttccgcat tcaccctagc aagcttattg atctctttag ctgaataaaa
    13381 gctgataaat aattgaatta tgatccagct taacaaaatg aatgcaaacc agggattaat
    13441 ggttaacatt aaaacgattg aaactacaat tgccgcaaaa gtagtgttta cattacaaga
    13501 tacgatttta cgaatggctt ccaatgatcg aggtatatca cttatcttat tagccaggtt
    13561 tcccgctaat tgattagaaa aaaaatgatg ggaatgctgt attaaataac cgaatagggt
    13621 catacggata ttggcttgaa attgaggaac aaggtaggct tgccaccaat tatgcaagcg
    13681 caacaccaga atcacaccaa accaggcaac tccacccaaa tacaaagccg gtgcgatgtc
    13741 ttgaaatatg ctgtcttttc cccctttatg gtttgttatc ccatcaataa tcatttttaa
    13801 agcataggga atcacattcg tttcaagcac catcaccact ggtgctatga aaaacaaagc
    13861 ataaagccag ggactttttt ttataaaatg ccaggaaaat ctcaggatag tcttaggcaa
    13921 ttgttgtaag tcagacatat tcacatcctt gtaaaaaatc tgtaacttct tatttaagat
    13981 aacaaagtca aagacaaaga gtaagtgtct ataaccaatt agatgctaaa ttgatggatt
    14041 tttgcgcctt aaatcatcac tcggtgaatt tttttgaata aagacatacc ttgccaaaat
    14101 ttttaaggaa tactaagcca taaaatagag agacagcata ttacacccaa aaaccataca
    14161 gtggagcgca gggaagacca attcagcaaa taaaacaaat gataaaaaag ccgggaaata
    14221 atataggcga tagcgaaata ttgggtcatt aaagtgactg aattagtggc caatgcagtt
    14281 aatgaagctg ttgcaaatat cagtaaagac tcaaaagcat tttgatgcgc tgccagagct
    14341 cttgcgccaa acccttgcaa gcgagcttgt tgctctctgg gataacgatt attatagcca
    14401 cccgccttat gcatggcata agctacagga acttttgcca gataaggtag caatatagcg
    14461 ataaacaagc aaacaattat agtatacatg gttatagagt atctcaggca tatattaaaa
    14521 ataactaaat gacatattaa ccaagatgtt ctctcaactc aatcgggcaa atttaattgt
    14581 agtccacttt agttagcagg aatactcctt aaatagcttt taaattactt cacggccagt
    14641 ttttggtcaa taattaat
//
LOCUS       DACVWI010000072        14503 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.072, whole genome shotgun sequence.
ACCESSION   DACVWI010000072 DACVWI010000000
VERSION     DACVWI010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14503
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.072"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1208
                     /gene="nuoN"
                     /locus_tag="JBH85_07905"
     CDS             <1..1208
                     /gene="nuoN"
                     /locus_tag="JBH85_07905"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HAU0946124.1"
                     /translation="KLFIDITVLLSFVYSQNYLDERQMPTGDYYVLGLFSTLGMMILV
                     SAHSLLSLYLGLELMSLPLYAMTAIRRTDSDASEAAMKYFVMGAIASGMLLYGISLVY
                     GATGKLDLLDVANAVAVNWQQQNTLFAFAMVFILAGVGFKLAAVPFHMWAPDVYQGAP
                     SSVTLFISTAPKIAALGMALRFLTIGLVDITMQWQQIILVMALLSTGIGNLLAVIQTR
                     IKRLLAYSAISHIGYALFGVLAASSAGYAAALYYILVYAVMSAAAFGLIVLMSNHGME
                     IDSIDDLKGLNKRNPWLAFMMLLVMFSMAGVPPTVGFFTKLLVLKALVDVHMTWLAVV
                     GLLFTVIGAYYYLRIVKIMYFDQPENEEIVRIGTGNTIVYSLNCLSLLYLGIFPGALI
                     AACINAFAN"
     gene            1274..1350
                     /locus_tag="JBH85_07910"
     tRNA            1274..1350
                     /locus_tag="JBH85_07910"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1308..1310,aa:Met,seq:cat)
     gene            1464..1907
                     /gene="rimP"
                     /locus_tag="JBH85_07915"
     CDS             1464..1907
                     /gene="rimP"
                     /locus_tag="JBH85_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HAU0946125.1"
                     /translation="MINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDG
                     IGIDDCQEVSKQVSAMLDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKT
                     FKPVNGKRKLSGIIVSASEDTIVLDINNEHQEILLSNIVKANLTV"
     gene            1919..3397
                     /gene="nusA"
                     /locus_tag="JBH85_07920"
     CDS             1919..3397
                     /gene="nusA"
                     /locus_tag="JBH85_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HAU0946126.1"
                     /translation="MSKELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIG
                     VRIKIDSKTGDYETFRYWDVVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSI
                     EFGRIEAQTARQVIMQKVREAERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKA
                     EAFLPRSEMLPHEMFRPNDRVRAYLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEI
                     GENIIDIKAAARDPGNRAKIAVKTNDGRIDPIGACVGMRGARVQAVSSELGGERVDII
                     LWDDNPAQLVINAMAPADITSIVVDEDTHTMDLAVAKEQLSQAIGRNGQNVRLASQLT
                     GWTLNVMTTEEFESKNQEESSKIVNLFTSALEIDEEIATLLVAHGFSSLEEVAYVPKE
                     ELLAIEEFDEEIVEELRNRANDKLLEMALSSGKGLSGTPDDSLINMEGMTEDLANKLA
                     SKGITTMEDLAEQSVDELMEIEGISEEKAGALIMKAREPWFQ"
     gene            3486..6092
                     /gene="infB"
                     /locus_tag="JBH85_07925"
     CDS             3486..6092
                     /gene="infB"
                     /locus_tag="JBH85_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HAU0946127.1"
                     /translation="MADVTVKQLAQVVGIPVERLLNQLQEAGLSFTDDQQTVNEEQKR
                     ILLNHLKGSSNRDISAAPERITLRRKSMSQVTVGHDMHSGKTVNIEVRKKKTFIKRSA
                     IPEQAEVEEPVVPPVVEEPVHEEITVVSEVSAETPELKETEEHPVIEPVAELDETVKE
                     EEKINSEENTAESQDELTHANTDVIENLVDVVEETIPVSKKEEVKPEKVSKKKHLEQT
                     DSDISEFKKGKKKPKYHTFEHDEEEQELHRRGGRSKFKKKKGTEKSDKYREAEETLTH
                     GFALPTAPIVREVLIPETITVAELAKRMSVKAAEVIKVMMSLGAMATINQVIDQETSV
                     IVVEEMGHKPIIIKEDAVETGLGEAISKGTKTEGRAPVVTIMGHVDHGKTSLLDYIRR
                     TKVAAGEAGGITQHIGAYHVSTPKGNITFLDTPGHAAFTAMRARGAQATDIVILIVAA
                     DDGVKPQTIEAIQHAKAAKVPIIVAINKMDKPDADPERVMNELSVQEVIPEAWGGDTM
                     FVNISAKSGMGIDDLLDAILLQSEVLELKAVTDGAAKGVVIESRLDKGRGPVATVLVQ
                     SGTLHKGDILLAGFQYGRVRALVSDNGDLVDSAGPSIPVEVLGLSAIPHAGDEAVVVP
                     DEKKAREVALFRQGRFRDVKLARRQKTTIEGIMENMTATESKVLNIVLKADVQGSLEA
                     ISDALTKLSTDEVKVDVISSGVGGITESDVHLAIASNAILIGFNVRADGTAKRLAEQE
                     SVSIHYYSVIYDIVDQIKGALTGMLAPQFKEEIVGIAEVRDVFKSPKIGAIAGCMVIE
                     GVVKRNNPIRVLRSNVVIYEGTLESLRRFKDDVLEVRQGFECGIGVKNYNDVKPGDLI
                     EVFETVEIKRDL"
     gene            6096..6467
                     /gene="rbfA"
                     /locus_tag="JBH85_07930"
     CDS             6096..6467
                     /gene="rbfA"
                     /locus_tag="JBH85_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HAU0946128.1"
                     /translation="MSNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVA
                     ADLGHAKIYFTVLNEDKSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYG
                     QRLSRLIDEVNPPDSSSDDNN"
     gene            6439..7365
                     /gene="truB"
                     /locus_tag="JBH85_07935"
     CDS             6439..7365
                     /gene="truB"
                     /locus_tag="JBH85_07935"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HAU0946129.1"
                     /translation="MIQVVMTTIESQCSIDGILLLNKPQGMTSNAALQKTKHLFGAKK
                     AGHTGSLDPLATGMLPLCFGEATKICQYLLNADKSYETIGRLGIKTNTADCTGEVIFC
                     IENYTVSHEEMIATLEKYKGKIKQIPSMFSALKHKGTPLYRLAREGIEIERKARDIVI
                     SQLNLEQFDGECFTLTVSCSKGTYIRNLVEDIGDTLKAGAHMTKLHRLYTAGFENNRM
                     YTLDELQDMPLSQRLACLIPIDQAVQHLTPVILSDSEVTAIRQGKVISNKTGAVEGED
                     LRLYGEQSQFIGIGQALIHGDIKAKRLVSFAL"
     gene            7513..7788
                     /gene="rpsO"
                     /locus_tag="JBH85_07940"
     CDS             7513..7788
                     /gene="rpsO"
                     /locus_tag="JBH85_07940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HAU0946130.1"
                     /translation="MSLNSAEKAEIINEYKRGDKDTGSPEVQVSLITSRIKYLTDHFK
                     ENKKDFHSRRGLQELVNKRRKLLKYLKRNDQDRYQTLIQNLGLRDSY"
     gene            7903..10092
                     /gene="pnp"
                     /locus_tag="JBH85_07945"
     CDS             7903..10092
                     /gene="pnp"
                     /locus_tag="JBH85_07945"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HAU0946131.1"
                     /translation="MAKITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVV
                     WKKDGGESNDFFPLTVNYQEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLF
                     PDNFFNEVQIIATVLSLNPEVSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVY
                     LLNPSRKEQEESKLDLVIAGTKDAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSI
                     EELARDVGKSKPEWKAPEIDTVLKARINDVARNEVEAAYLIKDKQQRYQRLDELREQT
                     ISALLAENDELNADVIANMFGELERSIVRNRILDGEPRIDGRDHRTVRPISIRTKFLE
                     RTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRDRFMLHYNFPPYSVGETGQV
                     GSPKRREIGHGRLAKRALMAVLPDANEFPYVLRIVSEITESNGSSSMATVCGTSLALM
                     DAGVPLKAPVAGVAMGLIKEGDRYAVLTDILGDEDHLGDMDFKVAGTEKGITALQMDI
                     KISGITNEIMEQALEQALEGRTHILGVMNNALAEHRTELSQHAPRITTMKVAEDKIRT
                     IIGKGGATIKGLIESTGVSIDIDDSGVVQLFSPDKMALEEAQKQIKALIAEIEVGQTY
                     QGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQKVEEVLQEGQEIEVFVAGIDKQG
                     RVKLEWKDKPQAEAKEVEDAPVSATFLTMEEQSEEINSGNKISEEEE"
     gene            10227..11318
                     /locus_tag="JBH85_07950"
     CDS             10227..11318
                     /locus_tag="JBH85_07950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HAU0946132.1"
                     /translation="MKLFSFFLVLISSASLGQSLPLHLLKYPSKFSINIYAAPVSDAR
                     EMALGSKDIVFVGSRSAGKVYAVIPDKKNSHGTRVLTIASGLNMPNGVAFHKGALYVA
                     EIGRILRFDNIESNLNNPPEPVVVTTKLPKEKAHGWRFISFGPDDKLYIGIGAPCNVC
                     LMEDPRYATIMRMNTYGQDLEIYARGIRNTVGFDWDPLHHNLWFTDNGRDWLGDNLPP
                     DELNVAPRKGMDFGFPYCYGKSTVDPVYGKIHSCSEFTPAVFEFPAHVAPLGMSFYTG
                     KLFPSNYWGQIFISEHGSWNRSHKIGYQVTTVKIKNNHVTEVKPFISGWLQGEKAWGR
                     PVDTLVMPDGSLLISDDYANVIYRVSYQQ"
     gene            complement(11377..11943)
                     /gene="folE"
                     /locus_tag="JBH85_07955"
     CDS             complement(11377..11943)
                     /gene="folE"
                     /locus_tag="JBH85_07955"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HAU0946133.1"
                     /translation="MAARLGILAMEKLYSNLLKELGEDINREGLKDTPGRAANALRYL
                     TKGYNENLDEIINGALFDSDMSEMVIVKDIELYSLCEHHLLPFLGKCHVGYLPDGKVI
                     GLSKIARIVDFYARRLQIQERLTGEIAHCIESTTGARGVAVVIEAKHLCMMMRGVEKQ
                     NSVMTTSVMLGEMRNNSSCRLEFLNLIR"
     gene            complement(11928..12269)
                     /locus_tag="JBH85_07960"
     CDS             complement(11928..12269)
                     /locus_tag="JBH85_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HAU0946134.1"
                     /translation="MNCLFCKIAQGEIPATVVFEDKNILAFRDIRPQAPTHLLIIPKK
                     HIATINDVNDDDSELLANILIRAKKLAQAEGLSEMGYRLVFNVNSGGGQEVYHIHLHL
                     LGGRQMTWPPG"
     gene            12399..12935
                     /locus_tag="JBH85_07965"
     CDS             12399..12935
                     /locus_tag="JBH85_07965"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HAU0946135.1"
                     /translation="MSLMEIQSGRDVPNEVNVIIEIPMHGEPVKYEVDKKTGALFVDR
                     FMTTAMFYPTNYGYIPNTLSEDGDPVDVLVITPVPLISGAVISCRAVGMLKMTDESGV
                     DAKILAVPTTKLSKMYQSMQTYQDIPQHLLLSIEHFFKHYKDLEEGKWVKVEGWVGPD
                     AAREEITSSINRYNHTKK"
     gene            13085..14350
                     /locus_tag="JBH85_07970"
     CDS             13085..14350
                     /locus_tag="JBH85_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAU0946136.1"
                     /translation="MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSN
                     DKQAMRVNSMLARPDKLLSVVLIGNTLANIVASTLATLIGQRFYGDAGVAIATALLTI
                     LILVFAEMTPKTLAAIYPQQVAFASSLPLSILQWIFSPLVHLISLITNGILRLFNISV
                     KRMQKETLTGEELRSVVHEAGGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDL
                     DLPWIELLEQLETAQHTRLPIYHGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEV
                     PYFIPEATPLNIQILNFRKMKRRSCFVVDEYGDILGLVTMEDILEEIVGEFTTDIAAL
                     SRDITPQQDGSVIVDASITIRHLNRMMGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLV
                     IDHYHIEILRVSDNMIRGVKMIKTNKKRK"
BASE COUNT         4492 a         2485 c         3231 g         4295 t
ORIGIN      
        1 tgaaactgtt tattgatatc acggttttat taagttttgt ctattcccaa aactatctgg
       61 atgaacggca aatgcctaca ggtgattact atgttctggg gctgttttca acactaggta
      121 tgatgattct tgtttcagca cactcgctgt tgtctcttta tctaggtttg gagttaatgt
      181 cattgccgct ctatgcaatg accgccatcc gccgaactga tagtgatgca tccgaagcgg
      241 caatgaaata ttttgttatg ggtgctattg cttctggtat gctgttgtat ggaatatccc
      301 tggtgtatgg tgcaacagga aaacttgatt tgttagatgt tgctaatgca gtggcagtca
      361 attggcagca acaaaatact ctttttgcgt ttgcaatggt atttatactt gccggtgtag
      421 gatttaaact ggctgctgtc cctttccata tgtgggctcc agacgtatat caaggggcac
      481 caagctctgt aacacttttt attagtacag cacccaagat tgctgcactg gggatggcac
      541 tgcgattttt aactattggc ttagtcgaca tcaccatgca atggcagcaa attattttag
      601 taatggctct cctttctacc ggcataggta atttgttagc agtgattcaa accagaatca
      661 aacgcttgtt agcttattct gcaatttctc atataggata tgccttattt ggagttttag
      721 ccgccagctc tgctggttat gccgcagcac tgtattatat tttagtctat gctgtaatgt
      781 cagcggctgc ttttggttta attgtattga tgtcaaatca tggaatggaa attgatagta
      841 ttgatgactt aaaaggcttg aataaaagaa acccgtggct ggcgtttatg atgctattag
      901 tcatgttctc aatggctggc gtgccaccaa cggttggctt ctttacaaaa ttattggtat
      961 tgaaggcatt agtagatgtt catatgactt ggttagctgt tgtaggtttg ctatttacgg
     1021 ttataggtgc ctattattat ttgcgaattg ttaaaatcat gtattttgat caacctgaaa
     1081 atgaagagat agtaagaatt ggtacaggca ataccatagt ttattcactt aattgtctct
     1141 ccttactata tttaggtatt ttcccaggcg ctttaattgc agcctgtatt aatgcatttg
     1201 caaattaatt aataaacttt aacaaaagta cttgcttagg gacccaagta tcagtatact
     1261 tgccctcagt tgacgcgggg tggagcagcc tggtagctcg tcgggctcat aacccgaagg
     1321 tcgtaggttc aaatcctgcc cccgctacca attttataaa accccatttt tggggttttt
     1381 tattatgttg actaggatac tgtctaaatc taagtcagtt accaggcttg ggcgagtgcg
     1441 cccttttttt gtttatacat actatgataa atgatgactt gatagtgcta ttagagccta
     1501 taatcaaaaa tatgggttat gaactttggg gctgtgaata tctttcccaa gggaaacact
     1561 cgttattaag aatttatata gacaagccag atggaatagg aatcgatgac tgtcaggaag
     1621 tgagtaagca agtcagtgca atgcttgatg ttgaagaccc tattccaggg cattatagtt
     1681 tggaaatatc atctcctggg ataccccggc ctttgtttag tatctggcaa tatcagcgtt
     1741 accttggtta tgaaattcat gtaaaaactt ttaagccagt caatgggaag cgaaaattat
     1801 caggtattat tgtttcagca tcagaagata caatagtatt ggatattaat aatgaacatc
     1861 aagaaatact tttatcaaat attgtgaaag caaatttgac agtctagaga ggcgaacaat
     1921 gagcaaagaa ttgttattag ttgctgaggc attatcaaac gaaagaggcg ttagtaaaga
     1981 cgtcattata cttgccattc aggctgcact ggaatctgca actcgaaaga ttcttggttt
     2041 agatataggt gtacgtatca aaatagattc taaaaccggt gactatgaaa cctttagata
     2101 ctgggatgta gtgaatgaag aagaattaga gtttccggac cgccaactgt ccttggaaca
     2161 agcaaaggag cgaaagccct cggctgctgt tggtgaccga attgaagaaa ttattccttc
     2221 catagaattt ggaagaattg aagcgcaaac agcgcgacaa gttattatgc aaaaagtcag
     2281 ggaagcggaa cgcgaattga tcatagacca attccgtagc aaacttggac agctaatcta
     2341 tggaactgtt aaaaaagtaa ctcgtgacaa tataattatt gatttaggtg gtaaagcaga
     2401 ggctttcttg ccacgctctg aaatgttgcc tcatgaaatg tttcgtccca atgacagagt
     2461 tcgagcatat ctgtacgaaa tcacgccgca ggcgagagga ccacaattgt tcgtaagcag
     2521 aactcgaaat gaaatgctca ttgaattatt ccgtattgaa gttccggaaa ttggtgaaaa
     2581 tataatagat atcaaagctg cagcgcgcga tccgggaaat agagccaaaa ttgctgttaa
     2641 aaccaatgat gggcgtattg accccatcgg cgcttgcgtt ggtatgcgtg gagcaagggt
     2701 acaagcggtt tccagcgaat taggcggtga gcgagttgat atcattctat gggatgataa
     2761 ccctgcccaa ttagtcataa atgcgatggc tccagctgat attacatcta tcgttgtaga
     2821 tgaagatacc catactatgg atttagctgt tgcgaaagaa caattatcgc aggcaattgg
     2881 tcgaaacgga caaaatgttc gtttggctag ccaattaact ggttggacat tgaatgtcat
     2941 gacaacagaa gagtttgaaa gcaagaatca agaggaatca agtaaaatag ttaatctgtt
     3001 taccagcgcg ctagaaatcg atgaggaaat agcgacatta ttggtagctc atgggttttc
     3061 ttctctcgaa gaagtggctt atgttccgaa ggaggagctg ctggctattg aagaatttga
     3121 tgaagagata gttgaagaat taagaaacag agcaaatgac aagttattgg agatggcact
     3181 gtcatcaggc aaaggattat ctggtactcc agatgattcc cttatcaata tggaaggcat
     3241 gacagaggat ttggcaaata aattagcaag taaaggaatt acaacaatgg aagatcttgc
     3301 agagcaatct gtagatgaat taatggaaat agaaggcatt agtgaagaaa aagcaggtgc
     3361 tttaattatg aaagcaagag aaccatggtt tcaataaact atggttatcg aaattgaaca
     3421 atacgatgct agatgcattt taaatatatt cagctttata aaaagttgct gagaggggat
     3481 taaatatggc ggatgtgacg gttaaacaat tagctcaagt cgttggtatc ccggttgagc
     3541 gcttattgaa ccagttacag gaagcagggt tatcttttac tgatgatcaa cagactgtga
     3601 atgaagaaca aaagaggatc ttgcttaatc atttaaaagg tagctctaat cgtgatatta
     3661 gtgctgcgcc tgaaagaata actttaagac gtaaaagcat gtctcaagtc actgttgggc
     3721 atgatatgca tagtggcaaa acagttaata ttgaggttag aaagaaaaaa actttcatca
     3781 agagaagtgc aattcccgaa caagcagagg tagaagagcc cgtagttccg cctgttgttg
     3841 aagaacccgt ccatgaagaa atcactgtgg ttagtgaagt gtctgcagaa actcccgaat
     3901 tgaaagagac cgaggagcat ccggttattg aacctgtagc agagctcgat gaaacagtaa
     3961 aagaagaaga aaaaatcaat tcagaggaaa acacagcaga gagtcaggat gagttaaccc
     4021 atgcaaacac tgatgtaata gagaatcttg tggatgttgt cgaggagacc atccctgttt
     4081 ccaagaagga agaagttaaa ccagagaaag taagtaaaaa gaaacatctg gagcaaactg
     4141 attctgatat ttctgaattt aaaaagggta agaaaaagcc taaatatcat acttttgaac
     4201 atgatgaaga ggaacaagaa cttcatcgtc gtggtggtcg aagtaaattt aaaaagaaaa
     4261 aaggaactga aaaatcggat aaatacagag aagctgaaga aacattaacg catggttttg
     4321 cgttacctac tgctccaata gtcagagaag tattgatacc agagacaatt acagttgccg
     4381 aactggcaaa acggatgtca gtaaaagccg ctgaagtgat taaagttatg atgtctttag
     4441 gagcgatggc aacaattaat caggtcattg atcaagaaac gtctgtaatc gttgtagagg
     4501 aaatgggaca taaaccgata attatcaaag aggatgctgt tgaaaccggt ttaggcgaag
     4561 caatttccaa aggcacaaaa acagaaggaa gagccccggt tgttacgatt atgggacatg
     4621 ttgaccatgg taaaacctcc ttactggatt acattcgtcg aaccaaggtt gcagcaggtg
     4681 aagcaggagg cattacgcaa cacataggtg cttaccatgt cagtacgcca aaaggtaaca
     4741 ttactttttt agatacgcct ggacatgccg catttaccgc gatgagagct cgtggtgccc
     4801 aagcaactga tatagtcatt ctgatcgtgg cagctgatga tggagttaag ccccagacaa
     4861 ttgaagcgat acagcatgcc aaggccgcta aggtaccaat tattgttgca attaataaaa
     4921 tggataaacc ggacgctgat cctgagcgag ttatgaatga actatccgtt caggaagtta
     4981 ttcctgaggc atggggtgga gataccatgt ttgttaatat ttcggccaaa tcgggtatgg
     5041 gtatagatga tttgctggat gcaattttat tgcaatcaga agtattagag ttaaaagcag
     5101 tgactgatgg cgctgcaaaa ggagttgtca ttgaatcacg tctggataaa gggcgaggtc
     5161 ccgttgcaac ggttttagtt caaagcggaa ccttgcataa aggcgatatt ttacttgctg
     5221 gctttcagta tgggcgtgtg cgtgctttgg ttagcgataa tggagatttg gttgatagcg
     5281 ctggcccatc cattccagtc gaagtacttg ggttatcggc tattcctcat gcaggagatg
     5341 aagcggtcgt tgtccccgat gagaaaaagg ccagagaagt tgctttgttt aggcagggta
     5401 gattccgtga tgtgaaattg gccagacgtc aaaaaaccac aatagaaggt attatggaaa
     5461 atatgacggc taccgaatcc aaagtcttga acattgtctt gaaagcggac gttcaaggat
     5521 cactggaagc aatttctgat gcattgacaa aattatcaac agatgaagtc aaggttgatg
     5581 tgatatctag tggtgtaggt ggaataacag agtctgatgt ccatttggct atcgcttcca
     5641 atgccatttt aatcggattt aatgtaagag cggatggcac agcaaagcgt cttgctgaac
     5701 aagaatctgt atcgattcat tactatagtg ttatttatga tatagtcgac cagatcaagg
     5761 gtgctttgac aggcatgctt gcgccacaat ttaaagaaga aattgttggt attgctgaag
     5821 ttcgagacgt attcaagtcg ccgaaaattg gtgctattgc tggatgcatg gtcattgaag
     5881 gcgttgtcaa acgtaataat ccaatacgtg tattgcgttc aaatgtagtg atttatgaag
     5941 gtactttaga gtcattaagg cgatttaaag atgacgtatt agaagtaaga caaggctttg
     6001 aatgcggtat cggcgtaaaa aactacaacg atgtgaagcc tggggattta atcgaggttt
     6061 ttgagacagt cgaaattaag cgtgacttat agaaaatgag taataatttt aagcgaactg
     6121 acagaattgc tgagatgatt cagcgcaaat tagctttgat cattccccag gaaataaaag
     6181 atcctcgctt gaagggtttt gttaccattt ctgcagttaa agtggctgcg gatttaggtc
     6241 acgccaaaat ttattttact gttcttaatg aagataaatc ggtggtgacc aatatattaa
     6301 atggtgcagc cagttattta aggagcgctc tggcaagaag tattactcta cgcactgtgc
     6361 cgcaacttca ttttatttat gatgaatcga ttgagtatgg acagcgatta agccgattaa
     6421 ttgatgaagt aaatccccct gattcaagta gtgatgacaa caattgaatc tcagtgttcc
     6481 atagatggaa tcctgctatt aaataaacca caaggaatga cctctaacgc tgctcttcag
     6541 aaaaccaaac atttgtttgg tgctaaaaaa gctggtcaca caggcagctt ggatccttta
     6601 gcaaccggca tgctacctct atgcttcgga gaagcgacta aaatatgcca gtatctcctt
     6661 aatgcggata aaagctatga aacaattggg aggctaggca ttaagacaaa tactgctgat
     6721 tgtactggcg aagtgatatt ttgcattgaa aattatactg ttagccatga ggaaatgatt
     6781 gcaaccctag aaaaatataa gggtaaaatc aagcaaattc catccatgtt ttctgcttta
     6841 aagcacaagg ggaccccttt gtatcgactt gccagagaag gtatagagat agaacgtaag
     6901 gccagggata tagtaatcag ccaattgaat ttggaacaat ttgatggtga atgttttaca
     6961 ttaacggtat catgcagcaa aggaacctat atacgtaatt tagtggaaga tattggtgat
     7021 acgttgaagg caggagctca tatgacaaaa ttgcataggc tctacactgc agggtttgaa
     7081 aataatcgaa tgtacactct cgatgagtta caggatatgc ctttatcaca aagacttgct
     7141 tgcttaatcc ctattgatca ggccgttcaa catttaacac cagtaattct ttcagattct
     7201 gaggtaacag caattcgcca gggcaaggtg atttcaaata aaactggtgc tgttgaagga
     7261 gaagatttgc gcctttatgg cgagcaatcc caatttattg gcattggcca agctttaatt
     7321 catggtgata ttaaagcaaa aaggttagtt tcttttgcgt tgtaattaca atttttgtaa
     7381 gaattgctgc ctactttgta ataagtatga aattttttac acaaatttat atccactact
     7441 tgtttcattt gacatgcctt ggtagaatgt tcgcctttaa aagaatactt agctgagttc
     7501 caggagtaaa taatgtcgct aaatagcgcg gaaaaagcag aaattattaa tgaatacaaa
     7561 cgcggtgata aagatactgg ttcacctgaa gtgcaagttt ctttaattac cagtcgtatt
     7621 aaatatttaa ctgatcattt taaagaaaat aaaaaagatt tccattcgag acgtggcttg
     7681 caagagttgg ttaacaagcg ccgcaagtta ctaaaatatt tgaagcgtaa cgatcaagat
     7741 cgctatcaaa cattaatcca aaatctggga ttgagagatt cctattgatt gataggatta
     7801 ttgtctctat ggggacgcat caaataataa atcagtttta gaataaaagg cgcagcgttc
     7861 tgcgcctttt ttttcttata tttacttaat ggggaacatt acgtggcaaa aattacaaaa
     7921 gaaatagtat tcggtaacca taaattaatc ttggaaacag gtgaagtagc acgacaggct
     7981 gatggtgccg taatggcaag tatgaatggt acacaagtgc tagtgactgt agtttggaaa
     8041 aaggatggtg gtgaaagtaa tgattttttc ccattaacag tgaattatca agaaaagttc
     8101 tatgccatag gtaaaatccc tggtggcttt aacaaacgtg aaggacggcc atctgataat
     8161 gaaacattaa tttctcggtt aatagataga ccgatccggc cattattccc ggataatttt
     8221 tttaacgaag tacagataat tgctactgta ctgtccttaa atcccgaggt atctcctgat
     8281 attatcgcta tgattggagc ctccgcagcg ctttcaattt ctggcgtgcc atttaatggc
     8341 cctataggtg ccgctcgagt aggctataaa gatggcgttt atctgctcaa tccaagtaga
     8401 aaagaacaag aagagtctaa gcttgatttg gttattgcgg gaacaaaaga tgccattttg
     8461 atggtggaat cagaagcgca ggaattaagt gaagacatca tgcgtggtgc tatgttatat
     8521 ggccatgaaa tgatgaaaaa tgtcataaaa tcaatagaag aacttgctag agacgtgggt
     8581 aagagtaaac ctgagtggaa agcaccagaa attgatacag tactaaaagc tagaatcaat
     8641 gacgtagcta ggaatgaagt tgaagccgct tatcttatta aggacaagca acaacggtat
     8701 cagcgattag acgagttaag agagcaaact atttctgctt tactggctga aaatgatgag
     8761 ttaaatgcag atgttattgc caatatgttt ggtgagctag aacgttctat agtacgtaat
     8821 cgtattcttg acggcgagcc tcgcatcgat ggtcgtgatc acagaacagt taggcctatt
     8881 tctattcgta ccaaattctt ggaaagaact catggttcct gtttgtttac cagaggagaa
     8941 actcaagcta ttgttgttgc cactttgggt aatgaacgtg atgcacagat attagacgga
     9001 attagtggcg aaagcagaga tcgatttatg cttcattata atttccctcc ttattctgtc
     9061 ggcgaaacag ggcaagtggg cagtcctaaa cggcgtgaaa ttgggcatgg ccgtttagcc
     9121 aagcgtgctt taatggctgt actgcctgat gctaatgagt ttccttatgt gctacgtatt
     9181 gtatctgaga ttacggaatc caatggctcc agttctatgg ctactgtttg tggaacaagt
     9241 ctggcattga tggatgccgg ggtaccttta aaagcaccag tcgctggtgt ggccatgggc
     9301 ttaatcaagg aaggtgatcg ttatgctgta ttaacagaca tattgggtga tgaggatcat
     9361 ttaggtgata tggactttaa agtggccggt acggaaaaag ggattactgc tttgcagatg
     9421 gatatcaaaa tttccgggat taccaatgaa attatggaac aggctttgga gcaagcattg
     9481 gaaggtcgta cccatattct tggtgtcatg aataatgctc ttgccgagca tagaaccgag
     9541 ttatctcagc acgctccaag aatcacaacc atgaaagtcg ctgaagataa aatccgcaca
     9601 attattggca aaggtggggc aacgattaaa gggcttattg aaagtaccgg cgtatctata
     9661 gatattgatg actcaggggt tgtccaatta ttttctccgg ataagatggc tttggaagag
     9721 gcgcaaaaac aaattaaagc tttaattgct gaaattgaag tgggtcagac ttatcaaggg
     9781 aaagtaagca agatagttga ctttggagct tttatcaatt tactgcctgg taaagatggc
     9841 ttactgcata tttcacaaat atgtgccgac agaacacaaa aggtagaaga ggtattgcag
     9901 gaaggtcagg aaattgaggt ctttgttgct gggatagata agcaagggcg agtcaaactg
     9961 gagtggaagg ataagccgca agctgaagcc aaagaggtcg aagacgcccc ggtatctgct
    10021 acgtttctta caatggaaga gcaatctgaa gaaattaatt caggcaacaa aatctctgaa
    10081 gaagaggaat aataagatag tagcatttca agttctattt attataaact cgtggaaggc
    10141 atgagctttt cgcgagtttt aactgagtgc ttgcaattgg tatatatgac cgcataaatt
    10201 ataagctact aaagtagagt ttaagcatga agctattctc tttttttctt gtattgataa
    10261 gttctgctag cttaggccag agtttaccat tacatctcct aaagtatccg tccaaatttt
    10321 cgataaatat ttatgcagct cccgtttctg atgcgcgaga aatggcactg ggcagtaaag
    10381 atatagtttt tgtaggctca agaagtgccg ggaaagtgta tgctgttatt ccagataaaa
    10441 aaaactctca tggtactcga gttttaacca tagcttctgg attgaatatg ccaaatggtg
    10501 ttgcctttca taaaggcgca ctttatgtcg ccgagattgg gcggatttta cgctttgata
    10561 atattgaatc aaatctgaat aatcctcctg aaccagttgt ggttactaca aaattaccga
    10621 aagaaaaagc tcatggctgg cgttttatta gttttggacc agatgataag ctttatatag
    10681 gaattggcgc cccttgcaat gtttgtttaa tggaagatcc gcgttatgct actattatga
    10741 gaatgaatac ctatgggcaa gatctcgaga tctatgctag aggaatacgt aatacagtgg
    10801 ggtttgattg ggatcccctt catcataatc tttggtttac agacaatggg cgtgactggc
    10861 taggtgataa cttaccccca gatgagctca atgtagctcc gagaaagggc atggattttg
    10921 gttttcctta ttgctatggt aaaagcacag tagatcctgt ttatggcaaa atacattctt
    10981 gttccgagtt tactcctgct gtttttgaat tcccagcgca tgttgctcca cttggtatgt
    11041 cattttatac aggcaaattg ttcccttcca attattgggg acaaattttt attagtgagc
    11101 acggttcctg gaatcgtagt cataagatcg ggtatcaagt tactacagta aaaattaaga
    11161 ataatcacgt aactgaggtt aagccattta tcagcgggtg gttacagggg gaaaaagcat
    11221 ggggaagacc tgttgatacg ctcgttatgc cagatgggtc actattaatc tctgacgatt
    11281 atgctaatgt aatatatcgg gttagctatc agcagtaaat ggagcagtta ttttattata
    11341 ggcggggata aagcccctac ctatttctta tcagtattaa cgaattaaat ttaagaattc
    11401 caaacggcag ctcgaattgt tacgcatttc accgagcata actgaagttg tcatgacaga
    11461 attttgtttt tcaactccac gcatcatcat gcaaagatgt tttgcttcaa tcactacggc
    11521 gacaccgcga gctccggtag tggattcaat acagtgagca atttcgcccg tcagccgttc
    11581 ttgaatttgt agtctcctcg cataaaaatc aacaatacga gcaattttag ataagcctat
    11641 tactttacca tcaggtagat atccaacatg gcatttaccc aaaaaaggca ataagtgatg
    11701 ttcgcataat gagtacagtt ctatgtcctt gacgataacc atttcactca tgtctgaatc
    11761 aaacagagca ccgttaatga tttcatcaag gttctcattg taacctttag ttaaataacg
    11821 taaggcatta gctgctcgtc caggagtatc ctttaatcct tcccgattta tatcttcgcc
    11881 taattcttta agcaaatttg agtataattt ttccatagca agaattccta acctggcggc
    11941 caagtcattt gacgcccgcc aagtaaatgt aaatgaatgt ggtaaacttc ctgcccgcca
    12001 ccagaattaa cattaaaaac caatcgataa cccatttcac ttagtccttc ggcctgtgct
    12061 aatttttttg ctcttattag aatattagca agaagttcgc tatcatcatc gttcacatca
    12121 ttgatagttg caatatgctt tttgggtata atcaataaat gtgttggtgc ttgaggtcta
    12181 atatcgcgaa atgccaaaat atttttgtct tcaaaaacta ctgttgcagg aatttcaccc
    12241 tgtgcaattt tgcaaaacaa acaattcata ggtcatccga tgttttagat tcaaaatgct
    12301 attatacatt tcatttatta tattgcgaac gcttgtcttt gccttttgat gcgatttttc
    12361 gcataatatt acttttattt attattaagg gtgcgtaaat gagtttaatg gaaattcaga
    12421 gcggtcgtga tgttccaaat gaagtgaatg tgatcataga aatccctatg cacggagaac
    12481 ctgtaaaata tgaagttgat aaaaaaactg gtgctttatt tgtagatcgt tttatgacga
    12541 cagcaatgtt ttatccaacg aattacggtt atatcccgaa tactctttca gaagatgggg
    12601 atcctgtgga tgtgttggta ataactcctg tccctttgat cagtggggct gttatttcat
    12661 gtcgagctgt tggcatgtta aagatgacag atgaatccgg agttgatgca aagattttgg
    12721 ctgttccaac aaccaaacta agtaaaatgt atcaatccat gcaaacttat caagatattc
    12781 ctcagcattt attgttgtct atcgaacatt tttttaagca ctataaagac ctggaagaag
    12841 gtaaatgggt taaggttgag ggctgggtag gcccagatgc agctcgtgag gaaataacat
    12901 ccagtattaa ccgttataat cacacaaaaa agtaaaacgg tagcttaaac tgtgccaggt
    12961 gttgggcatt gctcagcacc aaccttatat ctttagctat aatagcggca tcatttcagc
    13021 ccctactaca aaacaccaag ttctattgta taatttgtca ttcttaaaag tataaggata
    13081 ttcagtgcaa cttcctcttt ccactttatt ggttttattg tttttcctaa tttgcctgtc
    13141 tgcttttttt tcaggttccg aaattggcat gatgtctatc aatagatata aattacgaca
    13201 cctggtaaaa agcaatgata agcaagccat gcgggttaat tccatgctgg ctcggcctga
    13261 taaactacta agtgtggttt taattgggaa tactttggca aatatagtgg catcaactct
    13321 cgccacttta atcgggcagc ggttttatgg ggatgcaggg gtggctatag caactgcttt
    13381 gttgactata ctgatcctgg tttttgcaga aatgactccg aaaactctgg ctgctattta
    13441 ccctcagcaa gtagcttttg catcctcatt gccgttgagc attttacaat ggattttttc
    13501 tcctttggtc cacttaatca gtttgattac caatggtatc ctaagattat ttaacatatc
    13561 ggtaaaacgc atgcaaaagg agacgctaac tggtgaagag ttgcgatcag tggtgcatga
    13621 agcgggagga ttaatgcctg tagagcataa aagtatgttg attagtttat tggatctgga
    13681 acaagcaact gttgaagaca tcatggttcc caaagccgat attgttggga ttgatttgga
    13741 tttaccctgg atagaacttt tagagcaact ggaaacagca caacacacaa gattaccaat
    13801 ttatcatggt tctattgatc atttggcagg gatgatccac gtaagaaata ttttaaattt
    13861 agcattagaa aataagttgg atatggagaa tttgttaaat agtgcagaag tcccctactt
    13921 tattccagaa gctaccccat taaatataca aatccttaat ttcaggaaaa tgaaaagaag
    13981 aagttgcttt gttgtggatg aatatggcga tattcttggg cttgtgacta tggaagatat
    14041 tcttgaagaa atagtaggtg aattcacaac agatatcgct gctttaagcc gtgatataac
    14101 tcctcagcaa gatgggtcgg tcatagttga tgccagcata actattcgcc atttaaatcg
    14161 catgatgggc tggagcctgc ctttaatcgg tccaagaacc ctaagtggcc tgattatcga
    14221 gcatttaggg tatattccac cccctgactc ttgcctggtt attgatcatt atcatattga
    14281 aatattaagg gtcagcgata atatgataag aggtgtaaag atgattaaga ctaataaaaa
    14341 aagaaaatag ttcttataga ctctgactat caatttgctt ccagcttgtc cctattttag
    14401 cttacttaaa tatttatgca ttgataaagc gatataattt attcatttta tcgcaatata
    14461 tttcttcaat gcagatatta agatctcatt ttgaggggtg agg
//
LOCUS       DACVWI010000073        14266 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.073, whole genome shotgun sequence.
ACCESSION   DACVWI010000073 DACVWI010000000
VERSION     DACVWI010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14266
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.073"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            128..2146
                     /gene="legC6"
                     /locus_tag="JBH85_07975"
     CDS             128..2146
                     /gene="legC6"
                     /locus_tag="JBH85_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegC6"
                     /protein_id="HAU0946137.1"
                     /translation="MSHSKREQNPIARNLSDFRQVATLLNNEGLVVTEHNYKKVQALL
                     NRYKELATFIDQNQSKLNGKQIGELNQIRLIISPEERREIRKSVTRIENGIKNREERI
                     KEEYTRIEKQQAKAREVVQVLWPQLQKAAKKFINSGIANMEELLKEYKDLRNELYNHA
                     LNLPTQERKQKNQEMAELSRLVNIHESKLYEEINRARNVIEAAVTQAQKNVDSMSLLQ
                     MVRLMLPKLKDADILKIAQKAGVLSLQDTTTSEHGANLDKLVVREQPLEKQSALISIM
                     FKELALNGAQAGPLAKYLQAVQENAKDLISGKKTHFTLLYQTNEGEIGGFYFNIHELL
                     QNQHQAISKLVHEMYKRGVDQNSRVVMAFASPEQTASLMLANGENIKALTEAGNLQEL
                     TEQLLENAGDSKALARIVGHDVVIGQKTSEIIRDLNRSKEQNGIEPAEVMKLFQIIAV
                     IFETRNILINWITAPVHLKEQTEEALLGAGKTPAIVEGKGTQPKRVRFLPDLVEKPKA
                     TSPDTEQPVTKRKDDELLDKKIQVALEKVDQALEELKGKIGDINQHKYDKAYEAAKIL
                     LRQLQETRDQYAIDLANPQINFKEAGLKFKEASNLVIQQAKPILEKDLGWGEYLKNLF
                     KVIVNAIVFCVTFGASQGFFATTRAKSAEAVEKAESELELNQLGSLPK"
     gene            complement(2254..2811)
                     /locus_tag="JBH85_07980"
     CDS             complement(2254..2811)
                     /locus_tag="JBH85_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HAU0946138.1"
                     /translation="MARTLSNMLPLGTVAPHFELLDVVSGSKVKLRETPRYVATVIMF
                     ICNHCPFVKHINNELTQLANDYIPQGIRFLAINSNDVESYPDDSPENMIQTAKVHQYP
                     FPYLFDETQEVAKAYNAACTPDFFVFDSDLSLVYRGQLDDSRPGNGIPVTGNSIRQAL
                     DCLLNNKPFDFEQKPSIGCNIKWKI"
     gene            complement(2835..3212)
                     /locus_tag="JBH85_07985"
     CDS             complement(2835..3212)
                     /locus_tag="JBH85_07985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946139.1"
                     /translation="MITAIHYKLIYFIALELILGAGHTSLLLGMGRYIGLALPSLLCL
                     QLLIFYLMFGKGNSIFLLTGIIGIALLSMGLAYHNQIIFFSGSSGVAAYSYYSAYRGQ
                     YICYIWGILNTIFASYALYQLVF"
     gene            complement(3339..3827)
                     /locus_tag="JBH85_07990"
     CDS             complement(3339..3827)
                     /locus_tag="JBH85_07990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced entry protein EnhB"
                     /protein_id="HAU0946140.1"
                     /translation="MSLINYFTKTLLITAFATNAVQAASIFPRGCEVTGFGYSENYLI
                     LNETGNQTYYLIQNRSDSKIELERFDNSDAFMIPPLQASLDPMSWAAFASDVKNLNFK
                     CYKHVDENTALVDCRDVLEVCQYPRVKFALSNMGNYWISTNKSQNEVIQESVAKGIYL
                     KW"
     gene            complement(4150..4917)
                     /locus_tag="JBH85_07995"
     CDS             complement(4150..4917)
                     /locus_tag="JBH85_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine synthase"
                     /protein_id="HAU0946141.1"
                     /translation="MNPIKPPFTLNQYFAAWFVHVFTASAACIGVFSLYKIYQHDYVF
                     ALWLMAITVFIDAVDGSLARLVHVKSVLPKIDGALLDNIVDYLNYVITPCFFLLVKPG
                     MLPADYVVPITAAITITSAYQFCQDDAKTPDHFFKGFPCYWNITVFYMYIFNTSMIVN
                     TVLLSLFCVLIFIPVKYVYPSRLDYLTESRVLKILMHCCSALYGISSFCLLVNYPETN
                     KLWVSLSLGYVGMYLFLSFYRTYYPMFKAKITANNKD"
     gene            5248..6636
                     /locus_tag="JBH85_08000"
     CDS             5248..6636
                     /locus_tag="JBH85_08000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HAU0946142.1"
                     /translation="MNIQTVNPTTEEVLNIYTCLDFDSIDKKIACGYEAYLNWKNSKF
                     DIRRSLMLNLAQILKDKKQELAHLMALEMGKPIAAGRAEIEKCAWVCEHYAENAEQYL
                     MPRTVQTEMKTAKVCYRPLGIVFAIMPWNFPFWQVFRFSAPTIMAGNGAILKHAPISS
                     GTGNKIEELFRDAGFPSSLFQHLIVDNDGASHIIENQFVTAVTLTGSERAGQSVAANA
                     GKNLKKSVLELGGSDPYLILEDADLDLAAQCIVASRLNNTGQVCIAAKRVIALQSIEK
                     ELISKIKELISKYKMGDPLDPNINLGPMARKDLRENLHSQVEKSVKQGAKLLLGGIIP
                     EGKGYFYPPTLLTDVKPGMTAFDEELFGPVIVIITAKNESEAILLANMSQYGLGAAVF
                     TKDLNKGEHIATYEIEAGTCFVNAFVASDPRLPFGGIKRSGYGRELSREGILEFVNTK
                     TIAISDPKHGKK"
     gene            6623..7111
                     /locus_tag="JBH85_08005"
     CDS             6623..7111
                     /locus_tag="JBH85_08005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAU0946143.1"
                     /translation="MVKNSKFIFISIKKQEMSCFEKDHLIANYAISSGKNGVGEKINS
                     GCTPRGWHKIYSILGIDLPINSVMVAREWTGEIYSESLATQFPERDWILTRVLQLDGL
                     EPGRNKGGDVDTLHRYIYIHGTPDTTQLGIPGSHGCIRLNNDAIIELAAWATKNTLVY
                     IQ"
     gene            7163..12040
                     /locus_tag="JBH85_08010"
     CDS             7163..12040
                     /locus_tag="JBH85_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase"
                     /protein_id="HAU0946144.1"
                     /translation="MSYKFEEGKDAIVKSVVEKIKQTMTGEQTEFCAEFAKQFYGTVA
                     LEDLLEWEIDDLYGAAVNFWSLICERAPHETKIRIYNPDYERHGWQTTHTVVEVICED
                     MPFIVDSLRIVINRMGLTSHLTIHMGGIRVKRDSHNRVTEILPRNGGAARDDVLHEAP
                     IFIEIDRQTDPATLTELHKNFERALEDNRAVFEDWDKMRTKVREIIKELDTVPKTIDI
                     SEIEETKAFLNWMEDHHFTFLGLRDYDLVKKGKETILQPIPETGLGVLRQSLSKSNAR
                     SITAMGPEAQGLISSPRILVMSKTNTLASVHRDAYTDYIGVKRFNKKGEVIGERRIIG
                     LYTSAAYHTNPKHIPFLRHKVALIMKNSNLNPYSHAGKVLLNILETLPRDDLIQGTED
                     ELLEIAMGIFYMQDRKRIRLFARADVYKRFISCLVYVPKDRFNTELRYAMQKILADSF
                     NAEEITFSTQFSESVLARIHFIVRVNPKNLPDFDLKEIEQKLIEVGRSWIDDLQHHLH
                     EVYGEEQANSLYSRYKNAFPISYSDTFSPRTAVYDIKHIEMLSPENSLGINFYKPLDE
                     SEKSFRLKVYQHDTTIPLSDVLPILEKLGLRAISERPYVLKFEDGKVAWINDFAMQYN
                     KESEFNIDEIKELFQNAFARVWFGDAENDGFNLLVLAAGLNWREVAVLRTYAKYFRQI
                     GFTFSQDYMETALNNNVSIAKKLVRLFEIRCNPHDSKKREDRYVALVAEILSDLDNVA
                     NLDEDRIIRQYVHAIGATLRTNFYQVDAQGNPKNYISIKLSSKLIPGVPKPYPMFEIF
                     VYSPRFEGVHLRCGKVARGGLRWSDRREDFRTEILGLMKAQQVKNSVIVPSGAKGGFV
                     PKQIPANATREEIMEEGISCYKLFIRGLLDITDNYKEGLIVKPQNVVFYDEDDPYLVV
                     AADKGTATFSDIANSISQEYDFWLGDAFASGGSVGYDHKKMGITAKGAWESVKRHFYE
                     LNRDIQNNDFTVVGIGDMAGDVFGNGMLLSRHIKLVGAFNHIHIFIDPNPEAEASFKE
                     RERLFNLPRSNWTDYDKKLISKGGGVFSRSAKSIPVSPEMQKVFGIKQTSIEPNDLIK
                     AILKADVDLLWSAGIGTYVKSSTESNTSVGDRTNDATRVNANQLRCKVIGEGGNLGLT
                     QLARVEYSLHGGKVYTDFIDNSGGVNCSDKEVNIKILLNNVVSAGDLTPKQRNELLSN
                     MTDEVAKLVLRDNFLQTRAISLTASQALRAIELHARYINELEKTGKIDRTLEFLPDEK
                     VLMEHKLMGKGLTQPGIAVLMCYSKTILKEQVLASEVPEEDYMNQILIGSFPKPLQER
                     FSKQMQDHPLRREIIATRLSNIIVNEMGFTYVYRLQDETGASVAAIVRAYMIARSVLN
                     LEAIWKQIEELGTKVSAQAQVDMMMLYVRLSRRVTRWFLRTHRRSMSITQAIELYAKG
                     VDELKKSMPAVFGETGRIQYEEHYQERIKEGIPPQLAHELTVTRGLFAATDIIEIAYE
                     ENIKISKVAEIYFGIGEFLDIAWLRTQIIVHTTENHWESLSREALRDDLDWQQRQLTA
                     AIMGFEPNNKDLQERLTRWGETHVSLIDRWNYILTALKSSTALNYTMFLVATRELLDL
                     TQTTLQSNLKMEESF"
     gene            12061..12609
                     /locus_tag="JBH85_08015"
     CDS             12061..12609
                     /locus_tag="JBH85_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HAU0946145.1"
                     /translation="MEAKTASEYSTLSKLFHWIIALAVIIMLIAGFFLDEIPEQFQGV
                     AYMLHKSTGITILFLMILRFIWIHAKGKPALPASVKSWEKILSRSVQYGFYVLLIVMP
                     LSGWIMSVAADRIPNYFGLFKAPLPWIEPNKSLAKLMAESHEIIAWILIAFITLHVLG
                     ALKHHFIDKDNVLKRMLPGKSK"
     gene            complement(12640..13698)
                     /locus_tag="JBH85_08020"
     CDS             complement(12640..13698)
                     /locus_tag="JBH85_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HAU0946146.1"
                     /translation="MISDFERPNDTLLCIINNITDLDMKTMLEHLVNNRSLITFRPIE
                     SELLLNKQKNYLFDLSYLGVIDLFGEKSIDFLQGQLTCDLRLVSDVSMVQGAQCNLKG
                     RILSLLDIINWQGVKLVLPQDLIEVTQNSLNKVALLSRVKITSNNNYKILGFYLQHDN
                     DQIPQLLPLPSELYALSCTAHGCVYHLGKGFYIYLIHSDYYDSLCKPFIENNQLLGSL
                     TWHTLRLFNNQIDIYPNSRGLFLPHRIGLHQTTYVSFDKGCYKGQEIIARTHYRATLK
                     HELKKFVIQSDNQLYSGQKLFKSDENTEVGELIDYSMLGENRYLVAASILKENFSSVC
                     LEGNKFPIQLEGKIELEL"
     gene            13755..13994
                     /locus_tag="JBH85_08025"
     CDS             13755..13994
                     /locus_tag="JBH85_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HAU0946147.1"
                     /translation="MDNREKSRLLWKCRRGMLELDLVLQKFIANEIDRLTENQLKAFD
                     NLLTHNDPNLYAWLMGHEEPEKELLEIVSFIRNCD"
     gene            13936..>14266
                     /locus_tag="JBH85_08030"
     CDS             13936..>14266
                     /locus_tag="JBH85_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1578 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946148.1"
                     /translation="MRNPKKSCLKLYHSSETVIKPGKSKVYLRLITILYLCTIGLVLY
                     SSLPVLIEGVLIFLIVIQFKNDVTYQSACQKVKEIKCLKDLTWSLETIDGTTHHYDKL
                     KILIHNML"
BASE COUNT         4953 a         2316 c         2772 g         4225 t
ORIGIN      
        1 aacttgttat ctattagtca acatgcatta agatgttgta gttttgtaaa aaattgccca
       61 attaaatgtg acaaaatagc attccttgat tataatgcga gcacactaac catcaaggaa
      121 tcattctatg tctcattcca aaagagaaca aaatcctatt gctcggaatt taagtgactt
      181 taggcaagtt gcaacactat taaataacga gggtcttgtt gttactgaac ataactataa
      241 aaaagtccaa gccttattaa atagatataa agagctagca accttcattg atcaaaacca
      301 aagcaaatta aatggaaaac aaataggtga attaaatcaa attagattaa ttatttctcc
      361 ggaagagcgg cgagaaatca gaaaaagtgt tacacgtatc gaaaatggaa taaaaaatag
      421 agaagaaaga ataaaagaag aatataccag aatagaaaaa caacaggcta aggcaagaga
      481 agtagttcaa gttttatggc cacagttgca aaaagcagcc aaaaaattta taaattctgg
      541 aatagcaaac atggaagagc tattgaaaga atataaagac ttaagaaacg agttatataa
      601 tcatgcgctt aatcttccta ctcaggaaag aaagcaaaaa aatcaagaga tggctgagtt
      661 atcgcgtctt gttaatatac atgaaagcaa attatacgaa gaaattaatc gagccaggaa
      721 tgtaattgaa gctgcagtga ctcaagcaca aaagaatgta gacagtatgt cattgctgca
      781 aatggttcga ctcatgctgc ctaaattgaa agacgcagat atattaaaaa ttgctcaaaa
      841 agctggagta ctttccttac aggatacaac aacctctgaa catggggcaa atttagataa
      901 attggtcgta agagaacagc cattagaaaa acaatctgct ctaatttcta taatgttcaa
      961 ggaattggct ctcaatggtg ctcaggctgg tcctctggca aaatacctcc aggcagttca
     1021 agaaaatgca aaggatctaa taagtggtaa aaaaactcac tttactttgc tttatcaaac
     1081 aaatgagggt gaaattggag ggttttattt taacattcat gaattgttgc agaatcagca
     1141 tcaagcaatt tccaagcttg tacatgaaat gtataagaga ggagtagatc aaaacagtcg
     1201 agttgtaatg gcttttgcta gtccagaaca aactgcgtct ttgatgttag ctaatggaga
     1261 aaatattaaa gcattaactg aagccggtaa tttacaagag ttaactgagc aattattaga
     1321 aaatgctggt gattcaaaag cattggctcg catagtagga catgatgttg taattggcca
     1381 gaaaacttca gaaataatta gagatcttaa tcgttcaaaa gagcaaaatg gtatagagcc
     1441 agctgaagta atgaaattat ttcaaataat tgcagtaata tttgaaactc gaaatatttt
     1501 aatcaattgg ataactgctc ctgtgcattt gaaggagcaa acggaggaag ctttattggg
     1561 cgcaggtaaa actcctgcca tcgttgaggg taaaggaacc caacccaaac gcgtaagatt
     1621 tctacctgat ttagtggaaa agccaaaagc tacatcgcca gatactgaac aacctgttac
     1681 caaaagaaaa gatgatgaac tacttgataa aaaaatacaa gttgcattag aaaaggttga
     1741 tcaagcatta gaagaactga aaggtaaaat aggggatatc aatcaacata aatatgacaa
     1801 agcctatgaa gcagcaaaaa ttcttctaag acaattgcaa gaaacacgtg atcaatatgc
     1861 tattgattta gctaatcccc aaatcaattt caaagaggca gggcttaaat ttaaagaagc
     1921 tagtaacctg gtgattcaac aggccaaacc tatcctggaa aaggatttag gttggggaga
     1981 atacctcaag aacttgttta aagtgatagt aaacgctatt gtattttgtg tgacttttgg
     2041 agcaagtcaa ggcttctttg ctacgacacg tgcgaaatct gctgaagcag tggagaaagc
     2101 ggagagcgag ctggaactaa atcaactcgg ttcattacca aaataataca tatggttaac
     2161 tagtttgtta tgagagcaac attcgatttt tattatacat ataatgagta atggaaatcg
     2221 atgttgcttt tttgaattaa agatagattc agcctatatt ttccacttga tgttgcatcc
     2281 aatacttggt ttttgttcaa aatcaaaagg tttattattt aataagcaat ccaaagcctg
     2341 gcgtattgag ttgccagtta caggaatacc atttcctggt cttgaatcat ctaattgccc
     2401 tcgataaact aaagacaaat cagaatcaaa aacaaagaaa tctggtgtgc aagctgcatt
     2461 atatgctttt gctacttcct gggtttcatc aaaaagatat ggaaatggat actgatgaac
     2521 tttagcagtt tgaatcatat tttcaggtga gtcatcaggg taactctcta catcattgga
     2581 gttaatagct aaaaaacgaa ttccttgggg aatatagtca ttagcaagtt gtgttaattc
     2641 attattgata tgtttcacaa agggacaatg gttgcatata aacataatca cagtagccac
     2701 atagcgtgga gtctctctta atttaacttt gcttccacta actacatcca ataattcaaa
     2761 atgaggagct actgtaccta atggaagcat gtttgataga gttctagcca ttttattaaa
     2821 tccctcaaat aatcttaaaa taccaattga taaagagcat atgacgcaaa tattgtatta
     2881 agaatgcccc atatgtaaca gatgtattga cctctatacg cactataata agaatatgca
     2941 gctacgcctg aacttccaga aaaaaatatg atttgattat ggtaggcaag ccccatcgaa
     3001 agcagtgcta ttcctataat gccggttaat aaaaaaatac tgtttccctt gccaaacatt
     3061 aaataaaaaa tcagtagctg taaacacagt aaagaaggta aagctaatcc aatatatctc
     3121 cccataccaa ggagtaggga ggtatggcct gcccccaaaa ttaattccag agcaataaaa
     3181 taaatcaatt tataatgaat tgctgtaatc atgagagcaa gtgagccagt aatgtaatag
     3241 acttggggat tattctggct cagcccataa ataagtaaca aagcaccaac aatacctagt
     3301 accagatata gcgtgtcatg ctttgtttta ctcacggatc accattttag gtaaattcct
     3361 ttagcaaccg attcctgtat aacttcattt tgtgatttat tagtagaaat ccaatagttt
     3421 cccatattac taagtgcaaa tttaacacga ggatattggc agacttcgag aacatctcga
     3481 caatcaacta aagcagtatt ttcatcaaca tgcttataac acttaaagtt taaatttttt
     3541 acatctgagg cgaatgctgc ccaactcatt ggatctagcg atgcttgtaa gggaggaatc
     3601 ataaacgcat ctgagttatc aaaacgttca agctcaattt tcgaatctga acggttttga
     3661 atgagataat aggtttgatt acctgtttca tttaaaatta aataattttc actataacca
     3721 aaaccagtga cttcacagcc acggggaaaa atcgaagcag cctggactgc attggtcgca
     3781 aaagctgtga ttaacagcgt tttagtaaaa taattaatta atgacataat ttcctcagaa
     3841 aacaaaatta agatgctatt ttaatcatta aatagacaaa gtctatcatg gaataaaaaa
     3901 atcaaacgca tagaagctat taattcgtct ttattatatc tttgttatca ggtattcata
     3961 agttattggc ataatttaac ttctatagag gcgtagattt tatatcaatt gcttgcatta
     4021 cctctctatt ttttcagtaa acagatacta tttaaagcaa taagaacaga aaaattccta
     4081 aaagagtaag ataaaacagt gccgccagaa atgtaatatc tgcatggaaa acataaatta
     4141 catttaaact caatctttat tatttgccgt aatcttagct ttgaacatcg gataataagt
     4201 cctgtagaaa cttaaaaata aatacatgcc cacatagcct aaagataggc ttacccataa
     4261 tttatttgtt tcggggtaat taactagcag gcaaaatgaa ctgatgccat aaagagcaga
     4321 acaacaatgc attaatattt tcaagactct cgactcagtc aagtaatcta accttgatgg
     4381 gtaaacatat tttactggaa taaaaatcag tacacaaaaa agggacaaga ggacagtgtt
     4441 cacaatcata gaagtgttaa aaatatacat atagaagaca gtaatattcc aatagcaggg
     4501 gaacccttta aaaaagtgat caggagtttt ggcgtcatcc tggcagaatt gataggctga
     4561 tgtaattgta attgcggctg taattggtac gacataatca gctggcagca tacccggttt
     4621 aactagcaag aaaaaacatg gagtaatgac ataattcaaa tagtcaacta tattgtctaa
     4681 taaagcgcca tcaattttag gcaatacgct ttttacatga accaatcgag caaggctacc
     4741 atctactgcg tcaataaata cagtaattgc cattagccat aaagcaaata cataatcatg
     4801 ctggtaaatt ttatataagc taaagacacc aatacaggca gcgctggcag taaatacatg
     4861 gacaaaccag gcggcaaaat attgattaag ggtaaaggga ggctttattg gattcattac
     4921 ttatcctaga gttaatcaat gtaattaggg cttcagtctt ttttgtaaaa gcaaaaaaca
     4981 agttaccttt aaaaatatcc agcgcaatga ttaaatctgg attgttttgt tcattaagac
     5041 gatgtgtttt tgctttttac taaaacagta caagtccttt ttacttaaca ggttgatttt
     5101 tattactgtt ctttaagaca atgtcgttta aaataaaaat agtatcaata ttcaaaagca
     5161 aagtgcaagt taggttaatt atttaaaata aaaaaagctt tgatttggtc taaactatag
     5221 gcaacgttaa tcatatcgag taattaaatg aatattcaaa ctgtcaaccc gacaactgaa
     5281 gaagttctaa atatctacac atgcttggat tttgattcaa tagataaaaa aatagcgtgc
     5341 ggatatgagg cttatttaaa ttggaaaaat tctaaattcg acataaggcg ctctttaatg
     5401 ctcaatcttg ctcagatatt aaaagataaa aagcaagagt tagcgcattt aatggcttta
     5461 gaaatgggta aacctattgc agcaggtcgt gctgaaattg agaagtgtgc ttgggtatgt
     5521 gaacattatg ctgaaaatgc agaacaatac ctaatgccaa gaactgttca aactgaaatg
     5581 aaaacagcaa aagtttgtta cagaccacta ggaattgtat ttgccataat gccttggaat
     5641 ttcccatttt ggcaggtttt tagattttca gcaccaacta tcatggcggg taatggggct
     5701 attttaaaac atgctccaat atcgagtgga acagggaata aaatcgaaga attattcaga
     5761 gacgctggat ttccttcttc attatttcaa cacttaattg tagataatga tggggcatct
     5821 catatcattg aaaatcaatt tgttaccgca gttactttaa ctggaagtga acgtgccggt
     5881 caaagtgttg cagcgaatgc aggtaaaaat ttgaaaaaat cggttctaga attaggcggt
     5941 tcagatccct atttgattct tgaagatgcg gatttagatc ttgctgctca atgcattgtg
     6001 gcttcacgat taaataatac cgggcaggtc tgcattgcgg ccaagcgagt tatagcactt
     6061 caatcgattg aaaaagaatt aatttctaaa atcaaagaac tcatcagcaa atacaaaatg
     6121 ggagatccat tagaccccaa tattaatttg ggacccatgg caagaaaaga tttacgagaa
     6181 aatttgcatt cacaagtaga aaaatctgtt aaacaaggtg ctaaattatt gcttggtggt
     6241 ataattccgg agggtaaagg gtacttctac ccgccgacat tattaactga tgttaaacct
     6301 ggaatgacag cttttgatga ggaactattt gggcctgtta ttgttattat tactgctaaa
     6361 aatgagagtg aggcaatttt actggccaat atgagccagt atggtttagg tgctgctgta
     6421 tttacaaaag atcttaataa gggagagcat attgctactt atgaaattga agcgggaacc
     6481 tgttttgtta atgcttttgt agcctctgat ccaagacttc cttttggggg aataaagcga
     6541 tcaggatatg gtagagagtt atcaagagaa ggtatattag agtttgtaaa taccaaaaca
     6601 attgcgatta gtgacccaaa acatggtaaa aaatagtaaa ttcattttta tttcaataaa
     6661 aaaacaggag atgagttgtt ttgaaaagga tcatttaatt gcaaactatg ctatttcatc
     6721 cgggaaaaat ggcgtgggtg aaaaaattaa tagtggatgc accccgagag gttggcataa
     6781 gatctattct atacttggca ttgatctgcc aattaatagt gtgatggttg ccagagaatg
     6841 gactggtgag atttattcag aatcattggc aactcaattt ccagaaaggg attggatatt
     6901 aacccgagtt ttacaattgg atggattaga gcctggtcga aacaagggcg gagatgtaga
     6961 tactttacat cgttacattt atattcacgg cacaccagat acaactcaac taggtatacc
     7021 tggctcacat ggatgcattc gcctgaataa tgatgcaatt attgagctgg cagcttgggc
     7081 aacaaagaat actttagtat acatacaatg attaataaca attaatgctt cggagcataa
     7141 gtgaacctga aggggtaaat gaatgtccta taaatttgaa gaaggtaaag acgcaatagt
     7201 aaaaagcgtt gttgaaaaaa ttaagcaaac aatgactggc gaacaaacag agttttgcgc
     7261 tgaattcgcg aagcaatttt atgggactgt cgcccttgaa gatcttttag agtgggagat
     7321 tgatgatctt tatggagcag cagtcaattt ctggtctttg atttgtgaac gcgctccaca
     7381 cgaaacaaaa atcaggattt ataatcctga ttatgaacgt catggatggc aaactacaca
     7441 tactgttgta gaagttatct gcgaagatat gccttttatt gtagattctc tgaggatagt
     7501 aattaatcga atgggattaa catctcatct tactatccat atgggaggaa ttagggtgaa
     7561 aagagacagc cataacaggg ttactgaaat tcttccaaga aatggtggag ctgctagaga
     7621 tgatgtttta catgaggctc ccatttttat agaaattgat cgacaaacag acccggctac
     7681 cttaacggag ctgcacaaaa attttgaacg cgctcttgag gacaatcgag cggtatttga
     7741 agattgggat aaaatgcgta ctaaagtacg agaaattatt aaggagcttg atactgtacc
     7801 aaagacaatt gatatcagtg aaattgaaga gacgaaagcc tttttaaatt ggatggaaga
     7861 tcaccatttt acttttttag gattacgaga ttatgatttg gttaaaaaag gaaaagaaac
     7921 cattttacaa cctattcctg aaacaggatt gggcgttttg cgccaaagtc tgagcaaatc
     7981 aaatgcaaga agtattacgg caatgggacc agaggcacaa ggattaattt catcaccccg
     8041 tattcttgta atgtccaaaa caaatacttt agcctctgtt catagagatg cttataccga
     8101 ttatattggt gttaagcgct tcaataaaaa aggagaggtg attggcgaaa ggcgcattat
     8161 aggactgtat acttctgcag cttatcatac aaatcccaag catattccgt ttttgcgaca
     8221 taaagtcgca ttaattatga aaaattctaa tttaaatccc tatagccatg caggtaaagt
     8281 attattgaat atacttgaaa ctcttccaag agatgattta attcaaggca ctgaggatga
     8341 gttactggaa atagctatgg gtattttcta tatgcaagat agaaaacgta tccgcctgtt
     8401 tgccagagcc gatgtttaca agcgatttat ttcatgcttg gtatatgttc ccaaggatcg
     8461 gtttaatact gaattaagat atgccatgca aaaaattttg gcagacagtt ttaacgctga
     8521 agagattacc ttttctactc agttttcgga atcggtattg gcaagaattc attttatagt
     8581 aagggttaat cccaaaaatt tacccgattt tgatttaaaa gaaatagagc aaaaattgat
     8641 tgaagtgggg cggtcgtgga ttgatgattt gcaacatcat ttacatgaag tctatggcga
     8701 agaacaagcc aattcacttt actctcggta taaaaatgcg tttccaatat cttattctga
     8761 taccttttca cctagaacgg ctgtctatga tattaagcat attgaaatgc taagccctga
     8821 aaattcgctc ggtattaatt tctataagcc attggatgaa tctgagaaga gctttaggtt
     8881 aaaggtttat cagcatgaca ccactattcc tttgtctgat gtattaccta tcctggaaaa
     8941 acttggttta agagcaatta gtgaacgtcc ttatgtttta aaatttgaag atggtaaagt
     9001 agcatggatt aacgattttg ccatgcaata caacaaagaa agcgagttta atatcgacga
     9061 aataaaagag ttatttcaaa atgcatttgc cagagtatgg tttggtgatg cagaaaatga
     9121 tggctttaat ttattggtat tagcggccgg actaaattgg agggaagttg ctgtattaag
     9181 aacctatgca aaatatttca ggcaaatagg gtttacattt agccaggatt atatggaaac
     9241 agcactaaat aataatgtaa gcattgccaa gaaattagtt aggttatttg aaattcggtg
     9301 caatccccat gactccaaaa agagagagga tagatacgtt gcacttgtcg ctgaaatctt
     9361 atctgatctt gataatgtag ccaatctgga tgaagacaga attataagac aatacgtgca
     9421 tgccatcggt gccactcttc gtaccaattt ttatcaagta gacgctcaag gtaatcctaa
     9481 gaattatatt tctataaaat tgtccagcaa actcattcct ggtgtaccaa aaccataccc
     9541 catgtttgaa atttttgttt actcgccacg atttgaaggg gtgcatttgc gctgtggtaa
     9601 agtggctcgc ggaggtttac gctggtcgga cagacgtgaa gatttccgaa ccgaaattct
     9661 tggcttaatg aaggctcaac aagtaaagaa ctctgtaatt gtccccagtg gcgccaaagg
     9721 tggttttgta cccaaacaga taccagctaa tgctactcgt gaagaaatta tggaggaggg
     9781 aatcagctgt tataaactct ttataagagg tttgctggat ataacagaca attacaaaga
     9841 aggactcatt gtaaaacccc aaaatgttgt tttttatgat gaagatgacc cttatcttgt
     9901 ggtcgctgca gacaaaggca cagcgacatt ttctgatatt gccaattcaa tttcccagga
     9961 atatgatttt tggcttggag atgcttttgc ctcaggtggc tctgttggtt atgatcataa
    10021 aaaaatgggg attactgcta aaggggcatg ggaatctgtt aaacgccatt tctatgaatt
    10081 gaacagagat atccaaaaca atgatttcac tgtggttggc ataggagata tggccgggga
    10141 tgtctttgga aatggcatgt tgttgtccag gcatatcaag cttgtaggcg cttttaatca
    10201 tattcatata tttatagacc ctaatcctga agctgaagct agctttaaag agcgtgagcg
    10261 attattcaac cttcccagat ctaactggac agactatgat aaaaaactca tttccaaagg
    10321 aggaggggtt ttttctcgta gtgcaaaatc tatcccggtt agccctgaaa tgcagaaagt
    10381 atttggaata aaacaaactt cgattgaacc taatgatcta attaaagcaa tattaaaagc
    10441 cgatgtggat ttactttgga gtgctggaat tggaacctat gtcaaatcga gtactgaaag
    10501 taataccagc gtaggagatc gaacaaacga tgcaactcgt gttaatgcca atcagttgag
    10561 atgcaaagtt ataggcgaag gtgggaattt gggattaacc cagttagcac gagtggagta
    10621 tagtttacac ggcggcaaag tctatacaga tttcatagat aattctggtg gggttaattg
    10681 ctcagacaaa gaagttaata ttaagatttt attgaataat gttgtatcag ctggggatct
    10741 gactccaaaa caaagaaatg agcttttaag taatatgacc gatgaagtag ccaaattagt
    10801 gctcagagat aatttcctac aaacccgagc cattagctta actgcttctc aagccttaag
    10861 agccattgaa ttacatgcaa gatatattaa cgaactagaa aaaacaggaa aaattgacag
    10921 aactttagag tttttacctg atgaaaaagt cctaatggaa cacaaactaa tggggaaagg
    10981 attaactcaa cctggaattg ctgttttaat gtgctacagc aaaaccatac taaaagagca
    11041 agttcttgct tctgaagttc ctgaagaaga ttatatgaat caaatactta ttggttcatt
    11101 tcccaaacct ctgcaagagc gttttagtaa acaaatgcaa gatcatccct taagaaggga
    11161 gataattgct acccgtttaa gtaacattat tgttaatgaa atgggcttca cgtatgttta
    11221 caggttacaa gatgaaactg gggcctctgt tgcggcaatt gtcagggcct atatgattgc
    11281 cagaagtgtc ttgaatctgg aagcaatatg gaaacaaatt gaggaacttg gtacaaaagt
    11341 cagcgcgcaa gctcaagttg atatgatgat gctgtatgtt cgactatcca ggagagtgac
    11401 taggtggttt ttacggacac atagaaggtc gatgagtata acgcaggcga tagagttata
    11461 tgcaaaaggg gttgatgaac tgaaaaaatc catgcctgcc gtttttggtg aaacaggccg
    11521 gattcaatat gaagagcatt accaagagcg gataaaagaa gggataccgc ctcaacttgc
    11581 ccatgaatta acagtgactc gaggcttgtt tgccgcaaca gacattatag aaattgccta
    11641 cgaggaaaac ataaaaatat caaaagtagc tgaaatatat tttggtattg gcgaatttct
    11701 tgacatagct tggcttagaa cccaaattat tgttcacaca actgaaaatc attgggaatc
    11761 tttatctcga gaggcattac gcgatgattt ggattggcaa caacgccagt taacagctgc
    11821 cataatgggc tttgagccta ataataagga tttgcaagaa cgattaacaa gatggggaga
    11881 gacacacgtt tctttaattg acaggtggaa ctatattctg acagctctga aatcaagtac
    11941 agctttgaac tatactatgt ttttagttgc tacccgagag ttgctggatt taacccaaac
    12001 gacattacaa tccaatttaa aaatggaaga gtcattttga catgaaagga gttaaatgaa
    12061 atggaggcta aaactgcttc agaatattca acactgagca aattatttca ttggatcatt
    12121 gcattggcag ttataatcat gctaatagca ggtttttttc ttgatgaaat acctgagcaa
    12181 tttcaggggg ttgcttatat gcttcataaa tcaacaggaa ttactatcct tttcttgatg
    12241 attttgaggt ttatttggat ccatgctaaa ggaaagcctg ctttacctgc gtctgttaaa
    12301 tcttgggaga aaatattgtc aaggtctgtg caatatggtt tttatgtact cttgattgtt
    12361 atgccattga gtggttggat catgtcagtt gcagcagaca gaataccaaa ttactttggc
    12421 ttgtttaaag cgccacttcc atggattgaa cctaataaat ctctagcaaa attaatggct
    12481 gaatcccatg aaattattgc gtggatttta atcgccttca tcacactgca tgttttgggt
    12541 gctcttaagc atcattttat tgataaagac aatgtattga agcgtatgct gcctggaaaa
    12601 agcaaatagc cctctgtttt tgaaaattga gcctgaactt caaagttcaa gctcaatttt
    12661 tccttctaat tggattggaa atttattgcc ttccaaacag acagatgaaa agttctcttt
    12721 taatatactt gcagcaacca aatatcgatt ttcaccaagc atggagtaat caattaactc
    12781 tccaacctct gtgttttcat ccgatttaaa taatttttga ccagaatata attgattatc
    12841 tgactgaatc acaaatttct ttaattcatg cttaagagtg gctctatagt gagttcttgc
    12901 gatgatttcc tgacctttat aacacccttt atcaaaactg acgtacgtgg tttgatgtaa
    12961 gccaattcta tgtggtaaaa agagccccct agaattagga taaatatcaa tttgattgtt
    13021 aaataatcta agggtatgcc aggttaatga accaagtaat tgattatttt caataaaagg
    13081 cttgcacaaa ctatcataat agtctgaatg gattaaatag atatagaatc ctttgcctaa
    13141 gtgataaaca caaccatgag ccgtacaaga taaagcatac aattcgctgg gcaaaggtag
    13201 tagctgtggt atttgatcat tatcatgctg taaataaaag cctaaaattt tatagttgtt
    13261 atttgatgtg attttaacac gagaaagcag tgcaactttg tttaatgaat tctgagttac
    13321 ttcaattaaa tcttggggca gaactaattt tacaccttgc cagttgataa tatccaataa
    13381 ggaaagaatt ctccctttaa ggttacattg ggccccttga accattgaaa catccgatac
    13441 caatcgtaaa tcacaagtta actgcccttg cagaaaatct attgatttct ctccaaacaa
    13501 atcgatgaca cctagatagg ataagtcaaa aagatagttt ttctgcttat ttaataataa
    13561 ttcagactct atagggcgga atgttattaa agacctatta ttcactaaat gttctaacat
    13621 agttttcata tcaagatcag tgatgttgtt tataatacag agtagtgtat catttggcct
    13681 ctcaaaatca gatatcatta ttgaataatt agggttatgt tgtatttatc gtgaagtaac
    13741 agaggaaatc cattgtggac aatagagaaa aatcaaggtt attatggaaa tgcaggcgag
    13801 gaatgctaga gcttgatctt gttttacaga aattcatagc caatgagatt gatcgactta
    13861 cagaaaatca attgaaagca tttgataatc tattaaccca caatgaccct aatttatatg
    13921 cctggttaat ggggcatgag gaacccgaaa aagagttgct tgaaattgta tcattcatca
    13981 gaaactgtga ttaaaccagg taaatccaaa gtatatcttc gattaattac gattctttat
    14041 ttgtgcacca ttggattagt tttatattct tctttacctg tgttgataga aggcgtctta
    14101 atttttctta tcgttattca atttaaaaat gacgtaactt accaaagtgc ttgccaaaaa
    14161 gttaaagaaa tcaaatgctt gaaagatctt acgtggtcac tggaaacaat agatggtact
    14221 actcatcatt atgacaaact aaaaattctt attcataata tgctat
//
LOCUS       DACVWI010000074        14130 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.074, whole genome shotgun sequence.
ACCESSION   DACVWI010000074 DACVWI010000000
VERSION     DACVWI010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14130
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.074"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(34..882)
                     /locus_tag="JBH85_08035"
     CDS             complement(34..882)
                     /locus_tag="JBH85_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946149.1"
                     /translation="MIKDYLIETMNQDEVNLAITWAAQEGWNPGIHDATCFYQTDPHG
                     FFAGKLNGKTIAIGSAVIYDDFFAFCGFYIVDKSYRDQGYGLELTKARLAYIGNRNAG
                     IDGVINMLDKYARIGYQLAHNNARYCLNKTIKPISSEPHIVPLNQIDFSQLSSYDRLH
                     FPAPRPQFLKCWINQPQSLALAYLIDGQIKGYGVIRTCHKGFKIGPLFAGTPEIAHQL
                     FSNLVPYAKGQLIFLDIPENNPLAIELVSQYQMKKVFATARMYLKGEPPVKKESIYGI
                     TTFELG"
     gene            complement(936..1475)
                     /locus_tag="JBH85_08040"
     CDS             complement(936..1475)
                     /locus_tag="JBH85_08040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HAU0946150.1"
                     /translation="MNTITEDSLTEEQKYMVQVWENHTHYEFDTKNVADTMKTMEDNP
                     YVNNIPTMIGGFGQEEVKQFYSQLFIPQKPDDTEVELISRTVGTHQIVDELIFKFTHN
                     IRMDWILNGIEPTGKRVEIPLIAIVRFHNRKIISEHIYWDQASVLVQLGLLNSDKLPI
                     HGVEATNKIRELISRSLTK"
     gene            1630..4632
                     /locus_tag="JBH85_08045"
     CDS             1630..4632
                     /locus_tag="JBH85_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAU0946151.1"
                     /translation="MIPRLTSSTATPRKIRLFLQQLEKIPDFHGEIDEALSSRIVLST
                     DNSVYQIIPEAIIFPKSENDISHIFKLASSGQFRDLTFTPRGGGTGTNGQSLNAGIII
                     DCSRFMNHIVEINSDEDWVLVEAGVVLDQLNEYLKPYNKFFAPALSPSNRATIGGMVN
                     TDASGKGSRLYGKTSQYILALTAVYLGGEVHTSEEIDVSLLDNMKKLPGQVGQFYKQL
                     DKTVQEHRETIDRQLPKLHRFVSGYNLAKIYSNDGKRFNANYILAGSEGTLAYVTKIK
                     LKLTNIPKYKCLFVVLYPTFSDALEHAKHLVAFDPEAIETMDSTILKLAKTDIIYHSL
                     KSFLSSGNNIQVDAINLIEFVANDEKVLLHHAQLLKKSLKGTDFHFVTNNEDIINLWE
                     LRKRSVGLLGKVKGVRKPISGVEDTVVPPEYLADYVKEFRELLDSHGVSYGMFGHVDV
                     GCLHVRPELNLMDAKDREIYYEIIEKVAQLAHKYGGVLWGEHGKGFRSEFVPVFFGEE
                     LYNELRKIKSSCDPFNQLNPGKIAVPLGSHDSLASIRSEKTRADVDSQINYQYRDSYQ
                     LPLNCNGNGACFDYKLQDVMCPSYKISRDRIHSPKGRASLVREWLRQLSALTGKRELT
                     WPLKKRLNTYKRNHGQYDFSHEVYTALEGCLGCHACRSQCPVNINVPSFKAKFLQTYH
                     TRYSRSIKDYLIAYSERVGYFQSLFPELANFCLSNKLVKYCLHKYTGLVDLPLFSSPN
                     LKSLLKANNIPWLDLNHLPVSEKTVIYIQDWVTSFYEAELVLKACQLIKKLGFQVYVL
                     PWFENGKTLHDNGMLQSFAKITRKNDLMLQKLSDHRLTMIGLDPAMVLTYRYEYSEYL
                     HENYTSKILLIQEWLSQILGSEKVNELPIKANEKLNQYLLLSHCTEQANCSEALMQWQ
                     KVFQFFGLTLVAEKTGCCGMAGAYGHESIHQFNSHGLFDLSWKNYFEDSTGLANTLVD
                     GYSCRAQVKRLTGLKASHPVEILLGLFE"
     gene            complement(4720..5376)
                     /locus_tag="JBH85_08050"
     CDS             complement(4720..5376)
                     /locus_tag="JBH85_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946152.1"
                     /translation="MKAVANRYYVLCQEKVFIRSLLSGFFLLFISFLIMNFAGKYASL
                     MAGNPVNDLILDNLPLRDVTLFHVNAAIIFWTIFTIYTLLNPAFIPFITKSAALFILI
                     RCAFISMTHLGAPPNQLSIPDNFSSLVLFDGDLFFSGHVGGPFLMMLIFWNKTTLRYI
                     CLAAAVFFAYTVLIGHIHYSIDVFAAPFITYGIFHIGQFLFASDYQRLKSELTSSTGN
                     "
     gene            complement(5376..6557)
                     /locus_tag="JBH85_08055"
     CDS             complement(5376..6557)
                     /locus_tag="JBH85_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAU0946153.1"
                     /translation="MLSKICMKILTVLDSYPPDLNGGAYFTHRLAKFLQAKGHEVLVI
                     CPSRSLKQGYTSYEGVNLYGVRSWPALGYKNFRVCWPFFIKKGILKAITDFNPDVVHL
                     QGKFFLGGICYRACRKKGIPLMATNHFMPENFFHYTHLPKYFEKWFHRTTWNIVIDML
                     NHVKIVTTPTHTAANLLKEVHIQKEIHVVSCGVDLQKFQPKQNANLIRQRYKIPDKPI
                     LLYAGRLDKEKNLSIAIKAFYKARQSIDAHFVLTGRGAELQRLKKLVQTLNLTEHVTF
                     TGYLSDAEYPLVYSLANCFVNPGTAELQSIVALEAIASGLPLLAAKAMALPELVKEGV
                     NGYLFDPNDVETLSCYMVKILSDRTFSEQMGRESRKLSQEHDIKRTIEQYETLYQSMV
                     S"
     gene            6689..7672
                     /locus_tag="JBH85_08060"
     CDS             6689..7672
                     /locus_tag="JBH85_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HAU0946154.1"
                     /translation="MSSAKIIGMGKYLPANIVFSSDLDKKLNLPEGSVQKKSGLVSRH
                     FARVSETTSYMASQAALHAVEQAGITLAEIDAIIGACGAGEQPIPCTAVLVQKQLGLD
                     NSGIACFDINSTCLSFLTALDAASYMLSGGRFNRILIVSSDIPSFGLDWSDLETCTIF
                     GDGAAACVVERSNDYSRILAAHMKTYSFGADFCQVQAGGTFMPPASEYDKKYGLFKMD
                     GKRVFKLASQMIGPMQEELFAKASITLNDVDWVVPHQASLLAMHHIRKKLGIPGEKFV
                     DIYTTHGNQMAASLPSALCHLIHNHNLERGQLVYLLGTGAGLSAAGMILEY"
     gene            7674..8660
                     /locus_tag="JBH85_08065"
     CDS             7674..8660
                     /locus_tag="JBH85_08065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HAU0946155.1"
                     /translation="MISVVTGATGCLGLNLTRRLIKEGHAVIALGRNLQLGEIISQIG
                     ATFVPLDLKDLESLSLISQNADFIFHCAALSSPWGKYKDFYQANVIGTHNVVQATPSQ
                     ARLVYVSTPSIYFDFTEKHNIKENALLPAKPVNYYVQTKLIAESIVDKAQLQHDLDVI
                     TIRPRGIFGPYDRAIFPRLLKAERQGVLPIIGSGNHLIDITFVENVVESLILAALADK
                     CYSGKKYNITNDEPRTFIDIISRMFSALNKPLKTRSIPYNHARFVAKFLEFLHRLLYL
                     KTEPKITEYGVGVLAFGQTLNIEEAKKDLKYKPIYSIDEGIMKFAEWYCSCI"
     gene            8639..9475
                     /locus_tag="JBH85_08070"
     CDS             8639..9475
                     /locus_tag="JBH85_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAU0946156.1"
                     /translation="MVLFMHIEYQLFEAGYCKHCERMTLKNGKIRQREYPSFCALIKH
                     PSHGYILFDTGYSDRFTCLTQKFPASIYRHLTPMTLVKSLKEQLLEIHIKPEDINYIV
                     ISHFHADHIGGLCDFPNAHFICHSDAIDDIQHTKGLKALLKGFLPGLIPEDFFERLLP
                     LQKTIQLDEHLLPFSDGFDVLGDNSLIAIPLPGHAKGQIGLYFKAPGDIFLVADSCWH
                     QETFKELIYPSALTYLIHHDKRAYLKTIQKLHELHQRNKTIEIIPSHCQQLRSRIGNP
                     LC"
     gene            9433..10743
                     /locus_tag="JBH85_08075"
     CDS             9433..10743
                     /locus_tag="JBH85_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoF synthetase"
                     /protein_id="HAU0946157.1"
                     /translation="MPTIALENWEPIMLARILFHYFNTLYLNKTITTPAKLKLHQAKQ
                     FKKLIKNCLHQSAFYRDYLKTPLEQWPIVNKKIMMEHFDDVNTVNVKKTEALEIALRA
                     EHTRDFSPMINNIAVGLSSGTSGSRGLFLVSEQERDAWAGIILAKAMPNGLRSRERIA
                     FFLRANNQLYTTLNKSRTIQFHFFDLFADFDTHIQRLNAIQPTIISAPASVLLMLASQ
                     QDILKITPKKIFSVAEVLEPNEEEILTRAFGCTISQIYQCTEGFLAISERKTNRLLMN
                     EEFLIIEKEWLDEERFVPIITDLYRSTQPIIRYRLDDVLVTERSNGVFTELKNIEGRL
                     GDVCYGKRGQEIVPIFADVIRQHMISSGVSFEDYLICQQTLTQFTIQISPEISNKNQF
                     IEHLNQLFIYKNCELPQWNWELYDKSQPGVKRRRVRSLYCPKTE"
     gene            complement(10837..11751)
                     /locus_tag="JBH85_08080"
     CDS             complement(10837..11751)
                     /locus_tag="JBH85_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946158.1"
                     /translation="MTEEKFSLAIKNYGDHCIVKKILITLIGFLFMNTCHHLLYADNS
                     HHHTVKDLSTPSSKLENTPTIQLEVQKIIDKKDKKLVFVKLTDIKSNKPITFNDLTEI
                     HTKKFHLLIIDNHLIDYSHVHPAETATPGIYQFEWQPNFKNATYRAWADLLPTNTNKQ
                     EYATADLTSPQTVTRTMNPIHHRTVLESTVNGYQFKLTFNKMPLLAGKPAMGEIDVTD
                     SKGHPVRTLEPIMGAYAHIVGFNEDFKTVIHVHPMGKEPANSTERGGPQLQFHIEPNK
                     AGFIKMFAQVQIDGKVLYAPFAFTVKKA"
     gene            11906..14113
                     /locus_tag="JBH85_08085"
     CDS             11906..14113
                     /locus_tag="JBH85_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HAU0946159.1"
                     /translation="MAHNHHEGHSHVHNEHLCCHKKDNAHKPQIISDGTIFYTCPMHP
                     EVRQATPGICPLCGMALEPEAISIGEATNPEYLDMKHRFWVALILTLPVVILEMAGHG
                     FQHFVSTGISNWIQLLFATPVVLWCGWPFFLRGWQSLKTRRLNMFTLIAMGIGVAWIY
                     SVVAVFFPGLFPAAFRSQEGVVSVYFEAAAVIATLVLLGQVLELKAREQTGSAIRALL
                     KLAPENAHRIKEDGSEEEIALNQVEVGDSLRVRPGEKIPVDGEIQEGRSFIDESMVTG
                     EPMPVAKGIGDKVIGATINQTGSFIMKALHVGADTMLARIVQMVSDAQRSRAPIQRVA
                     DTVSAWFVPAVILVAVLSFITWGLLGPQPSLGYGLIAAVSVLIIACPCALGLATPMSI
                     MVGVGKGAQNGVLIKNAEALERMEKVNTLIVDKTGTLTEGHPKLTHIETSEDWDERQA
                     LLLAASLEYHSEHPLASAIVKAAQEMQIAFISVQNFEAPTGRGVVGRVNSHHVAIGNA
                     KLMHEYGSDDTSLFEKADKFRAKGSSVMFMAVDGKTVAFLVVEDPIKSTTAETIHALQ
                     KKGIEIYMLTGDSKKTAEAVAATLGIKNVIAEIMPEDKGRIVSELKGNGLIVAMAGDG
                     VNDAPALAKADVGIAMGTGTDVAIESAGVTLLHGDLSGIAKARYLSESTMNNIRQNLF
                     FAFIYNMLGVPLAAGIFYPLTGLLLNPVIAAGAMALSSVSVIVNALRLRRVTL"
BASE COUNT         4375 a         2501 c         2855 g         4399 t
ORIGIN      
        1 tgatccatat ccagtgagat ctcgggtcat ggtttatcct aattcaaaag tagtaattcc
       61 ataaatactt tcttttttaa ccgggggttc tccttttaaa tacatacgtg ctgtagcgaa
      121 taccttcttc atttgatatt gactgaccag ctcaattgct aaagggttat tctctggaat
      181 atccagaaat atcaattgac ccttagcata tgggaccaaa ttactgaaaa gttggtgtgc
      241 aatttccgga gtacccgcaa atagtggccc aatcttaaat cctttatgac aggtcctgat
      301 aacaccataa cccttaattt ggccatcaat taaataagcc agagccaagc tttgtggctg
      361 atttatccag cattttaaaa attgaggacg aggtgctgga aaatgtaagc ggtcatagga
      421 tgataactgc gaaaaatcga tttgatttaa tggaacaata tgaggttcag atgatattgg
      481 ttttattgtc ttattaagac aatatctggc gttattatgt gctaattgat aaccaatgcg
      541 ggcatattta tccagcatgt tgatcacacc atcaattccc gcgtttctgt taccaatata
      601 agctagcctt gctttggtta attccaagcc ataaccttga tccctatagg acttatcaac
      661 aatatagaaa ccgcaaaaag caaaaaaatc atcatagata acagcagaac caatggctat
      721 cgtttttcca ttcagcttac ctgcaaaaaa accatgagga tcagtttgat aaaagcatgt
      781 tgcatcatga attcctggat tccaaccttc ctgggcagcc cacgttatag caagattcac
      841 ctcatcctga ttcatggttt ctataagata atcttttatc atgacgatcc ctgtattctt
      901 taaaaataat tatagttata agtaagcgtt ttttcttact tagtcagact tcgtgatatc
      961 agttccctta tcttattggt ggcttctact ccatgaatgg gtagtttatc tgaattgagt
     1021 aaaccgagtt gtacaagaac ggatgcctga tcccaataaa tatgttcgct tatgattttt
     1081 ctattatgaa atctgacaat cgcaattaga ggaatttcta cacgttttcc agtaggctcg
     1141 atgccattta atatccaatc catcctgata ttatgagtaa atttaaaaat gagttcatct
     1201 acaatttgat gagtccctac tgttcttgaa atcagttcaa cctcagtatc atctggtttt
     1261 tggggtataa acaattggct gtaaaattgt ttgacttctt cttgtccaaa tccgcctatc
     1321 atggtaggta tgttattgac atagggattg tcttccatgg ttttcatagt atctgcaaca
     1381 tttttagtgt caaattcata atgggtatga ttttcccata cttgaaccat gtatttttgt
     1441 tcttcagtca gagaatcttc tgttattgtg ttcatatcat tttaatcctt taaaaagatg
     1501 tctgtatcct taatttagac taaaaagact attttttctg attgaatagt agtcgtcttt
     1561 atgatttagc cctaattatc tggtagtcta taatgagaag attaatggag gaaaagctag
     1621 gaaaaaatta tgatcccgcg tttgacctct tccaccgcaa cacccagaaa aatcaggtta
     1681 tttttacagc aacttgagaa aatacccgat tttcatggtg agattgatga agctttaagt
     1741 agccgaattg ttttatcaac ggataatagt gtttatcaaa ttattcctga agccatcatt
     1801 ttccctaaaa gtgaaaatga tatatctcat atttttaaat tagccagtag tgggcaattt
     1861 cgtgatttaa ctttcacccc caggggtggc ggcactggaa ctaatggcca atcactaaat
     1921 gctggaataa tcatcgattg ttctcgtttc atgaatcata ttgtggagat aaactctgat
     1981 gaagactggg ttttggttga agctggagta gttcttgatc aattaaatga atacctgaag
     2041 ccttataaca aattctttgc acctgcttta tccccaagta atcgcgctac cattggaggt
     2101 atggttaata cagatgccag tggcaaaggc tcaagattgt atggaaaaac cagtcaatac
     2161 atacttgcat tgacagctgt ctatcttgga ggagaggtcc ataccagtga agagatagat
     2221 gtcagtcttc ttgataatat gaaaaaattg cctgggcagg tagggcagtt ttataagcaa
     2281 ttggataaaa ctgtccagga acatcgagag acaattgata ggcaattacc taaattgcat
     2341 cgatttgtct ccggttacaa tttggcaaaa atttactcaa atgatggcaa gagattcaat
     2401 gccaattata ttctcgcagg ttctgaagga actttggcct atgtcactaa aatcaagtta
     2461 aaattaacga atatacccaa atacaaatgc ctgtttgttg ttttgtatcc tacatttagt
     2521 gatgctcttg agcatgcaaa gcatttggtg gcatttgatc cagaagccat tgaaacaatg
     2581 gatagcacta ttttgaaatt ggccaagaca gatattattt atcattctct gaaatctttt
     2641 ctgagctctg gaaacaacat ccaagttgat gcaattaatt tgattgaatt tgtggcaaac
     2701 gatgaaaaag tgttactaca ccatgcgcaa ttattgaaga aaagtttaaa aggtacggat
     2761 tttcattttg ttactaataa tgaggatatt atcaatcttt gggagttaag aaagcgcagt
     2821 gttgggcttt taggtaaagt aaagggtgta agaaaaccca tatcgggtgt tgaggatact
     2881 gttgttcctc cagagtattt ggctgactat gtcaaggaat ttcgtgagtt acttgattct
     2941 catggggtta gttatgggat gtttggtcat gttgatgtag ggtgtttaca tgttcgccct
     3001 gaattgaact tgatggatgc aaaagatagg gaaatctatt acgaaataat agaaaaggtg
     3061 gcgcaacttg cccataaata cggtggggta ttgtggggcg agcacggtaa aggatttcga
     3121 agtgaattcg tgcctgtatt ttttggagag gaactctaca atgagctcag gaaaattaaa
     3181 tcaagctgtg atcctttcaa ccaattaaat cctggaaaaa ttgctgtccc cttaggtagc
     3241 catgattcac ttgccagcat ccgttcggaa aaaaccagag cagatgtaga cagtcaaatt
     3301 aactaccagt atagagattc ttatcaatta cctttaaact gcaatggaaa tggagcgtgt
     3361 ttcgattata aattacaaga tgtgatgtgc ccttcttata aaataagcag ggatagaatt
     3421 cattctccta aaggaagagc cagcttggtt agggaatggt taaggcaatt aagtgctttg
     3481 acaggaaagc gagaattaac atggccgttg aaaaagcgat taaatactta caaaaggaat
     3541 cacggccaat atgatttttc ccatgaagtt tatactgcgc tagaaggatg tctgggatgc
     3601 catgcatgtc gttctcaatg tccggttaat atcaatgttc cttcgtttaa agcaaaattt
     3661 ttgcaaacct atcacacacg atattctcgc tcaataaaag attatcttat tgcttacagt
     3721 gaacgtgttg gatattttca aagcctgttt ccagaattag ctaatttctg tctctcaaat
     3781 aaattagtaa aatattgttt acataaatac acagggttgg ttgatctccc tttgtttagt
     3841 agtccaaatc tgaagtcact cttaaaggca aataatattc catggcttga tttaaaccat
     3901 ttacctgtca gtgagaaaac tgtaatttat atacaggatt gggtgaccag tttttatgaa
     3961 gctgaacttg tgctgaaagc ttgtcagtta ataaaaaaac tggggttcca ggtttatgta
     4021 ttaccttggt ttgaaaatgg taaaactctg cacgacaatg gaatgcttca gtcatttgca
     4081 aaaattacca gaaaaaatga tttaatgctt caaaagctat cagatcatcg attaaccatg
     4141 ataggactag atccagctat ggtattaacc tatcgatatg aatattctga atatttacac
     4201 gaaaattaca ctagtaaaat cctgttgatt caagagtggc tctcgcaaat actgggtagt
     4261 gaaaaagtca acgagttacc aataaaagct aatgaaaaac ttaatcagta tttattgcta
     4321 agtcattgca cagaacaggc aaattgcagt gaagctttaa tgcagtggca gaaagtcttt
     4381 caattttttg gtttgactct agttgctgaa aaaacagggt gttgtggtat ggctggagct
     4441 tatggacatg agtcaatcca tcaatttaat tcccatggct tgtttgattt atcatggaag
     4501 aattattttg aagacagtac tggtttagct aatactttag tcgatggcta ttcatgtcga
     4561 gcacaagtca aacgattaac tggtttaaaa gcttctcacc ctgttgaaat attactggga
     4621 ttatttgagt aggtataagc tggaattgat tatctcagcc aaatatttac cgaattactt
     4681 tctcatgcgg gttaatcctg cagcatggtg caactgttat caatttccag ttgatgatgt
     4741 cagttctgat tttagtcgtt gataatctga tgcaaacagg aattggccta tatgaaatat
     4801 tccataagta ataaatgggg ctgcaaaaac atcaatacta taatgaatat gaccaatcag
     4861 caccgtataa gcgaaaaaaa ctgcagcagc aaggcaaata taacgtaatg ttgtcttatt
     4921 ccaaaagata agcatcatta aaaaagggcc tccgacatgt ccagaaaaaa ataaatctcc
     4981 atcaaataaa acaagagatg aaaaattatc tggaatagac agttgattag gaggtgcacc
     5041 gagatgggtc atactaataa aggcacaacg tatcaatata aacagcgcgg cacttttagt
     5101 gataaaagga atgaaggctg gatttaacag ggtataaata gtaaaaattg tccaaaagat
     5161 aatagccgca ttaacatgaa aaagagttac atcacgcaga ggtaaattat caagaattaa
     5221 atcatttacc ggattaccgg ccataagtga agcatatttt cctgcaaaat tcataatgag
     5281 aaaacttata aaaagcaaaa aaaagccact aagcagactt cttatgaata ctttttcctg
     5341 acaaagaaca tagtagcgat ttgcgactgc tttcattaac tcaccatcga ttgatagagt
     5401 gtttcatatt gttcgatagt tcgtttgata tcatgctctt gagataattt tctgctctcc
     5461 cttcccattt gttcactgaa agtcctatca ctaagaatct tgaccatata acaagacaat
     5521 gtctcaacgt cattagggtc aaagagataa ccatttactc cttctttaac aagttcaggt
     5581 aaagccatcg cttttgcagc caaaagaggc aatccagaag caattgcttc caaggcaaca
     5641 atactttgta attcagcagt tcccgggttt acaaaacaat ttgctaaact atataccagc
     5701 ggatattccg cgtctgatag atatcctgta aaagtgacat gctcagtgag attcagtgtc
     5761 tgaaccagtt tttttaatct ttgtaattcc gcaccacgac cggttaaaac aaaatgagca
     5821 tcaatggatt gtcttgcttt ataaaatgct tttatggcta ttgataaatt tttttcttta
     5881 tccaaacgac cagcatacaa tagaattggc ttatcaggga ttttataacg ttgtctaatg
     5941 agattggcat tttgttttgg ttgaaatttt tgtagatcca ctccacaaga aacaacatga
     6001 atttcttttt gtatgtgtac ttctttaagt aagttagctg cagtgtgggt aggagtagtg
     6061 actatcttta catgatttag catgtcaatc acaatattcc atgtggtgcg atgaaaccat
     6121 ttttcaaaat acttgggaag gtgagtataa tgaaaaaaat tttctggcat aaaatgatta
     6181 gtagccatta acgggatacc ctttttacga caggctcgat agcaaattcc acctaagaaa
     6241 aattttccct gcaaatgaac gacatcagga ttaaagtctg ttattgcttt taaaataccc
     6301 ttcttgatga agaaaggcca gcaaacacga aagtttttgt aaccaagggc tggccatgat
     6361 cgtactccat agagattgac tccttcatag cttgtataac cttgcttcag gcttcgagag
     6421 gggcatatca caagaacttc atgccctttg gcttgtaaga attttgccaa acggtgagta
     6481 aaataagcac caccatttaa gtcgggagga tagctgtcca gtacagtcag gattttcatg
     6541 catattttag ataacatata agattagata gattatcatt tatacaaatg cacggcaatt
     6601 atttaccaac caacctttaa aaagttctct ttgactataa taggccttat agtacaataa
     6661 ttgctccatc ctttaacaag tcagttctat gtcgtcagca aaaatcatcg gaatgggaaa
     6721 atatttaccc gcaaacatag tgttttcatc tgatctggat aaaaaactca atcttcctga
     6781 aggcagtgtt cagaagaagt ccggattagt ttccaggcat tttgccagag tcagtgaaac
     6841 aacctcctat atggcaagtc aagctgcatt acacgctgtg gaacaagcag gaattacttt
     6901 agctgaaatt gatgccatta ttggggcgtg tggagccgga gagcaaccta taccatgtac
     6961 ggcggttctg gttcaaaaac aattgggatt agataattca ggaatcgcct gttttgatat
     7021 taacagtacc tgtcttagtt ttctcactgc actcgatgcg gcatcatata tgctctcagg
     7081 gggcagattt aatcgtatac ttattgtatc aagtgatatc ccttcatttg gcctggattg
     7141 gagcgacttg gaaacctgta cgatttttgg tgacggggca gctgcttgtg ttgttgaaag
     7201 aagcaatgac tatagtcgaa ttcttgctgc tcatatgaaa acatacagtt ttggtgctga
     7261 cttttgccag gtccaggctg gaggaacatt catgccgcct gcaagtgagt acgataagaa
     7321 atacggttta tttaaaatgg atggaaagcg tgtattcaaa ctggccagcc aaatgattgg
     7381 acccatgcaa gaggagttat ttgctaaagc tagtataact ctaaatgatg ttgattgggt
     7441 tgtcccacat caagccagct tgcttgctat gcatcatata cgtaaaaagc ttggcatccc
     7501 tggtgaaaaa tttgttgata tttacacgac gcatggcaat caaatggctg cttctctgcc
     7561 ttccgcattg tgtcatttga tccataatca taatttagaa cgcgggcagt tggtttattt
     7621 attaggtact ggcgctggat tgtcagctgc tggaatgata ctggagtatt agtatgattt
     7681 cagttgtaac cggcgctaca ggatgtttag gtttaaatct tacaagacgc ttgattaagg
     7741 aaggccatgc agtcattgca ttaggacgca atttgcagtt gggtgaaata ataagccaaa
     7801 taggagcaac atttgttcca ctcgatttaa aggatctgga gtctttgtct ttgataagtc
     7861 aaaatgcgga tttcatattt cattgcgcag ctttatcaag cccctgggga aaatataaag
     7921 atttttatca ggctaatgtc atagggactc acaatgtcgt tcaggcaact cccagtcagg
     7981 ctcgacttgt ttatgtctcc actcctagta tttattttga ttttaccgag aagcacaata
     8041 ttaaagaaaa tgcactttta ccagcaaaac cggtcaatta ttatgtgcaa accaaattaa
     8101 ttgctgaatc catcgtagat aaagctcaac tacagcatga tctggatgtg attaccatac
     8161 gtcccagagg aatttttgga ccatatgatc gcgctatttt cccccgttta ttgaaagcag
     8221 agcgccaagg ggtgcttcca atcattggtt caggtaatca tttgattgat attacttttg
     8281 tagagaatgt agtggaaagc ctgattttgg ctgctttggc agataaatgc tattcaggga
     8341 aaaaatataa tatcactaat gatgaacctc ggacttttat tgatatcatt tcaaggatgt
     8401 tttctgctct taataaacca ttaaaaacca gaagcattcc ttataatcac gcaagatttg
     8461 tcgcaaagtt tcttgagttt ttgcatcggt tgctttatct gaaaacagaa ccaaagatta
     8521 cagagtatgg tgtcggagtg ttggcttttg gacaaacatt aaatattgaa gaggcaaaaa
     8581 aagatttaaa gtataagcca atttatagca ttgatgaggg tataatgaaa tttgctgaat
     8641 ggtattgttc atgcatatag agtatcagtt atttgaagct ggctattgca aacattgcga
     8701 acgcatgact ttaaaaaatg ggaaaatcag acagcgtgaa tatccatcct tctgtgctct
     8761 tataaaacac ccaagtcacg gatatatttt atttgacaca ggatattctg accgttttac
     8821 ctgcttaacc caaaaatttc cagcctctat atatcgtcat ttaactccta tgacacttgt
     8881 aaaatcctta aaagaacagt tgctagaaat tcatataaaa cccgaagata tcaattatat
     8941 tgtgatttcg cattttcatg ctgatcacat tggaggatta tgcgattttc ctaatgctca
     9001 ttttatatgt cattctgatg cgatagacga tattcagcat acaaaggggt tgaaagcgtt
     9061 attgaaaggt tttttacctg gactgatacc tgaagatttc tttgagcgtt tattaccact
     9121 tcaaaaaaca atccaacttg acgagcatct tttacctttt tctgatggtt ttgatgtatt
     9181 gggtgacaac tcattgattg ctattccttt accgggacac gctaaaggac aaatcggctt
     9241 atattttaaa gcgcctggcg acattttcct ggttgcggac agttgctggc accaggaaac
     9301 ttttaaagaa ctcatttatc cgagcgcttt gacctatttg attcatcatg acaagcgtgc
     9361 ctatttaaag acaattcaaa aattgcacga actacatcag agaaacaaga ctattgaaat
     9421 tattccttct cactgccaac aattgcgctc gagaattggg aacccattat gttagcacgt
     9481 attctatttc actatttcaa tacactttat cttaataaaa ctattactac cccggcaaaa
     9541 ttaaagcttc atcaagcaaa acaatttaaa aaacttataa aaaattgttt gcatcaatcc
     9601 gcattctata gagattatct aaaaactcct ttggaacaat ggccaattgt taataaaaaa
     9661 atcatgatgg aacactttga tgatgttaat acagtaaatg tcaaaaaaac tgaggcattg
     9721 gaaattgctt tacgtgctga gcatacacgt gatttttccc caatgataaa taatattgct
     9781 gttggtttat cttcagggac ttcagggagc agaggcttgt ttttagtaag tgaacaggaa
     9841 cgtgatgcct gggccggaat aatccttgcc aaggctatgc caaacggttt gcgttcgcga
     9901 gaacgaattg ctttttttct aagagcaaat aaccagttgt ataccacttt aaataaaagc
     9961 agaacaatac aattccattt ttttgatctt tttgctgatt ttgatactca tatccagaga
    10021 ttaaatgcca ttcaaccgac tattatttca gctccagcca gtgtgctttt aatgcttgct
    10081 agtcaacaag atattttaaa aattacacca aaaaaaatat tttctgtagc cgaagtactc
    10141 gaaccaaatg aagaagagat tttaaccaga gcatttggtt gtaccatatc acaaatttat
    10201 caatgtacag aaggttttct ggctattagt gaacgtaaga ccaatcgctt attgatgaat
    10261 gaagagtttc ttattattga aaaggaatgg ttggatgaag agcgattcgt gccaattatt
    10321 actgacttgt acaggtctac tcaaccaatt attcgttacc gtcttgatga cgttttggtg
    10381 actgaaagat cgaatggtgt atttactgag ttaaagaata ttgaaggtcg tttaggtgat
    10441 gtttgttatg ggaaaagagg gcaagaaata gttcccattt ttgcagatgt tattcgacag
    10501 catatgatta gcagtggtgt aagttttgaa gattatttaa tttgccagca gacattaacc
    10561 caatttacaa ttcagatatc acccgaaata agcaataaaa atcaattcat tgaacatttg
    10621 aatcaacttt ttatctataa aaattgcgaa ttaccccaat ggaactggga gctctacgat
    10681 aaaagtcaac ctggtgtgaa acgcagaagg gtccgctcac tatactgccc taaaacagaa
    10741 taagcgggta caaagaactg gtttgctttg cacaacacaa gccaggagct tacaataata
    10801 tttgcgtctg taaaagacag gctcttaatt tagtcgttaa gcctttttta ctgtgaatgc
    10861 aaatggcgcg tagagtactt tcccatcaat ttgcacctgg gcaaacattt taatgaaacc
    10921 tgctttatta ggctcaatat ggaactgtaa ttgaggtcct ccacgttcag tgctatttgc
    10981 aggctctttg cccatggggt ggacatggat aacggtttta aaatcttcat taaagccgac
    11041 aatgtgtgca taggccccca taattggttc tagtgtacgg actggatgcc ctttagaatc
    11101 agtcacatcg atttcaccca tcgcaggttt acctgctagt agaggcattt tattgaaagt
    11161 taatttgaat tgatatccat tcactgtact ctctaatact gttcgatgat gtataggatt
    11221 cattgttctt gttactgtct ggggagatgt tagatcagca gtggcatact cctgtttatt
    11281 ggtattggtt ggtaacagat cagcccatgc ccgataggtg gcattcttga aattgggttg
    11341 ccattcaaat tgataaatcc ccggagtagc agtttctgcg ggatgaacat gactatagtc
    11401 aataagatga ttatcaatga tcagtaaatg aaattttttt gtatgtatct cagtaagatc
    11461 attgaaagta attggtttat tcgattttat atcagtgagt ttgacaaata ccagtttctt
    11521 atccttttta tcaattatct tctggacttc caattgtatt gtgggtgtat tctccaattt
    11581 agaggaaggc gttgaaagat ctttcaccgt gtgatgatgg gaattatcgg catagagcaa
    11641 atgatgacag gtgttcatga ataaaaagcc aattagcgtg atgagaattt ttttcacaat
    11701 acaatgatct ccgtaatttt ttattgccaa gctaaatttt tcttctgtca acgatgaatt
    11761 ataactgaaa gtagctgatt cttacagggt aagaaatgca ttatttatta tgaccttgta
    11821 gatataaacc agtataacag ggtatcatga gctaatttaa atggttataa attccaggca
    11881 gaataaaact acggataggt gaataatggc acacaaccac catgaaggtc attcccatgt
    11941 tcataatgaa cacctttgtt gccacaagaa agataatgca cataaaccgc aaattatttc
    12001 agatggaaca attttctata cttgccccat gcatcccgaa gttcgccagg ctaccccggg
    12061 gatttgtcca ctttgtggaa tggcattaga accagaagca atttccattg gtgaagcaac
    12121 aaatccggaa taccttgata tgaagcaccg attttgggtg gcgttgatat tgactttgcc
    12181 tgtagtaatc ttggaaatgg ctgggcatgg attccagcat tttgtttcga caggtatttc
    12241 aaattggatt caattgttgt tcgcaacacc cgtggtgcta tggtgcggtt ggcctttttt
    12301 cctgcgtggt tggcagtcac tcaaaacacg ccgattaaat atgtttactt tgatagcgat
    12361 gggtattggt gtcgcatgga tttatagtgt ggtggcggtt tttttccccg gattattccc
    12421 cgctgcgttt cgaagtcagg aaggggtggt ctctgtgtat tttgaagcag ccgctgtgat
    12481 agccacactt gtactgctgg ggcaagtact tgaattaaag gctcgagagc aaacaggtag
    12541 tgccattcgt gctttactga aattagcacc agaaaatgcg catcgcatca aggaagacgg
    12601 tagtgaagag gaaatagcac tcaatcaagt agaggtcggt gattcgctgc gtgtacggcc
    12661 aggtgaaaaa atacctgtgg acggtgaaat acaagaagga cgtagtttta tagatgaatc
    12721 tatggtaacg ggtgaaccta tgcctgttgc taaaggaatt ggagacaagg ttattggcgc
    12781 tacaattaac caaacaggta gcttcattat gaaagcattg catgttggtg cagataccat
    12841 gctggcacgt attgttcaaa tggtgagtga cgctcaacga agccgtgctc caattcagcg
    12901 tgtggcggat actgtctcgg cctggtttgt tcccgcagtg attttggtag cggtactgtc
    12961 ttttattaca tgggggctat taggtcccca gccatctctt ggttatggct taattgctgc
    13021 tgtatcagtt ctcattattg cttgcccatg tgcgttgggt ttggcaacac caatgtctat
    13081 catggtaggt gtgggaaaag gcgcgcaaaa tggagtatta atcaaaaacg ctgaagcact
    13141 tgaacgaatg gaaaaggtaa atacgctcat cgtagataaa acgggcacac ttacggaagg
    13201 gcacccgaaa cttacccata ttgaaaccag cgaagattgg gatgagagac aagcattgct
    13261 attagctgct tctctggaat atcacagtga acatcccctg gctagcgcga ttgtgaaagc
    13321 agcacaagaa atgcaaatag cttttatctc agttcaaaat tttgaagcgc caaccgggag
    13381 gggggtagta ggtagagtaa atagccatca tgtagctatc ggtaatgcaa aattaatgca
    13441 tgagtatgga agcgacgata cttctctttt tgaaaaagct gataaatttc gggcaaaagg
    13501 ttcttctgtt atgtttatgg cagtcgacgg taaaacagta gcgtttttag ttgtagaaga
    13561 tcctattaaa tctactaccg cagaaaccat tcatgcactt cagaaaaagg gtattgagat
    13621 ttacatgctg actggtgata gcaagaaaac cgcagaagct gtggcagcta ctctgggcat
    13681 aaaaaatgtc atagcagaaa taatgcctga agataagggt cgtattgtca gcgaattaaa
    13741 aggaaatggt ttaattgtcg cgatggctgg cgatggagta aatgatgctc ctgcactggc
    13801 aaaagcagac gttggtattg ctatgggtac agggactgat gttgctattg agagtgctgg
    13861 tgttaccttg ctacatggag atttgagtgg tattgccaag gccagatatt tatcagaaag
    13921 cacaatgaat aacatacgtc aaaatctctt ctttgctttt atttataata tgctgggtgt
    13981 tccgctagca gcaggtattt tctacccact aacaggcctg cttttaaatc cagtgattgc
    14041 tgcgggagct atggcacttt cttccgtgtc agtcatcgtt aatgccctaa ggttgcgacg
    14101 agttacattg taaatctgta aataaaatat
//
LOCUS       DACVWI010000075        14074 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.075, whole genome shotgun sequence.
ACCESSION   DACVWI010000075 DACVWI010000000
VERSION     DACVWI010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 14074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14074
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.075"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            167..2725
                     /locus_tag="JBH85_08090"
     CDS             167..2725
                     /locus_tag="JBH85_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HAU0946160.1"
                     /translation="MLYSNYRFYLAKDAQLLNPEESREAIEQILAKTKELELIRVAVD
                     LTSSNKSISLLSASKENHVIKTKVTQILKEQGLSVIDMMEVEVLQDIEKIEHHHPTHK
                     SKNTHLHPVKKHQKKAKHDHSHGHGHHHGHHHENHWIKAALGLIWGIGLLVLSIGTFN
                     IPLVAYYVITGLTSLMTLYLGHTVYQSAWQALKEKKWDTTTLYSISTLTILAVSIASV
                     FVPGLPMMFEAAPLVLGFWHLGEGIEHTLVGKINKKLDVRDCVPPLVLLKGNPDKEIS
                     VKTLIPNDMIIVKKGQVIPVDGVLTQKALLYTTRIDGSPKLKEFHPGDVVKAGMQLAD
                     HIPSLEMQVTKTYQNSYLSLIAENINKANDEKAPIEMFADKVLKYFIPGLIAVALLSG
                     IVIGSLFNPALAIQCVVSVLVSACPCALSLITPMAVKIGMKKASENGIHFNNGKALQA
                     AADIDTVVFDLNGTLTQGKMVVKSLHITDKKYLRPIALLESQSDHPVAKIIKSYMEQQ
                     DTASTEPLEITSIDKSHHSGMKGIINGEVFIIGNKDMLAANGITSIDKPYDNPEKGSV
                     YIVRGTTVIGQIALIDPLREDAIATVKQLKRLGKSVHICTGADQATAEKYAALLGIPK
                     DNICANTVGAVTKKGEVSKTSYIQQLKQKGFKVAMVGDAANDATAIAYSDIGIAVKSS
                     IGDSITEQHAGIVVQQGLLFPIATAFDVAQKTKQNIFQNLFVSLSYNSIITLVAAGLF
                     VALGFALNPVLGVALMVLESTIVLTNLYLFKQQDIVSSTSSNANNAVEIEPAANTTSK
                     VLHALGHRSQPQENLAVVTESKPVNPKVINLFAPKEHSSYRPDATQQKLGCGIC"
     gene            2872..5001
                     /locus_tag="JBH85_08095"
     CDS             2872..5001
                     /locus_tag="JBH85_08095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAU0946161.1"
                     /translation="MNKTWHQTATGNRSILSNLRLSRTLLNIIFIIALSLLLIINIIS
                     YNQVKNLIFASNWVSHTHEVIQTIDTCLYDIVEIESRQRFYLIRGSSSQLMADIDDMK
                     STLQLNLDKLEQLTRDNPEQNKRIHRFIDLVKQRLNLLNQLVQLKGSGKLDTQEGYDL
                     LNQSQDMSHQVKSLGQEIKSVELVLLSERNTGVVRWAVTSSFILISGGIASILFLTLA
                     FILANIELSTRRKTELQNQNTQIRLKKIIESASDMIAAFGKDQRFITFNEAYQREFKR
                     LFDKSISINMSLEEAFNNAPENKKKLVQSWKESLQRDEETKNIEVNTEQEKTIYEMTS
                     KLIQNGDNEIKGVVHSVRNITKRVQEHTELQESYEKLANGMKELQEKNEQITLLVEMS
                     DIMLACGSQEELSEVMAKYSQRLLQFSSGYLFIMHPSKNYLEKAASWGNPHPHDLTFT
                     PEQCWAIRLGRIHYAGSSRIELMCSHMMFDEQPELSLLCVPLMAQNDIYGLLYLEVGL
                     KFDENQQLLITAFAELTALALANVRLRENLRYQSIRDPLTGLYNRRYLEDFLFKQLHQ
                     AERTKASFAILMLDLDHFKKINDTFGHDAGDLVLKELGQILNNDIRLGDIAARYGGEE
                     FVLLLYDINAQAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSPAEV
                     IEAADKALYQAKNKGRNKVILFSEISP"
     gene            5213..6046
                     /locus_tag="JBH85_08100"
     CDS             5213..6046
                     /locus_tag="JBH85_08100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biliverdin-producing heme oxygenase"
                     /protein_id="HAU0946162.1"
                     /translation="MFSKALISATYKNGKPGQLTEEHEKAEHHRFKTDYLFKNAEISK
                     DLYASRLIQHFLIIKAIETKLQNLSKTEQSEISAFFALSYLEQLWRTTAIENDLRQLN
                     INPDEIHKDEMTKTTENYLENIEKFTPKILLAHFLLHIAGFMHGGNIIRSKYIEPSNR
                     LTTYQITADQYDFSAAISFLSSGKHSPLALYQDMMKQIDNIVLTGDEYQELLEQCKGI
                     YETMSNIYDDLCDMHTHHLKLPTYSLAAISVSLVALGLILKLLMDFLNPMTNPIANAP
                     R"
     gene            6194..7759
                     /locus_tag="JBH85_08105"
     CDS             6194..7759
                     /locus_tag="JBH85_08105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HAU0946163.1"
                     /translation="MLKRDISTLNILVASAGGMIGSGWLFSPFISAQMAGSNSLISWV
                     IAAIFMLFIALPLCELGTMFPVSGGMSNYPTYTHGREVGFLFAWTSWLSYVVMTPIEI
                     QAILQYSSHFFPILIDNHSESLTLSNYGYLAAVGIMFFVVILNSYGIKFLAECNKYAS
                     VIKFVLPSIAIISLLKQSPSLANVNINLSSKEHWVEIFTALSAGGVAFAFTGFQNGLI
                     LAGEVKNPQRNIPIAILGAVLVGFILYFMLQFSFIAAVPQKYLAQGWHALSYPGDEGP
                     LVGLTLLLGLGIVATLLLFDAAFSPFGTTLVYTAATSRILYGMALNQHLPKFFLKVNR
                     HNIPYVTLYANLLVGSFAFLPFPGWQKLVAFLSSASILSYGIGPICLLAMRKMHPHMN
                     RPFKLANSIFLSHIAFYICNLMLYWCGFSIIWKLNLALLMGLGIYFFYHRYISLRNGS
                     PLVWFIMYMGSFSIISYLGSFGGIGLLKFPFDLICFLPYSILILYMSQVLATPRHDND
                     MIGNVTELPVYNS"
     gene            complement(7930..9036)
                     /gene="ceg7"
                     /locus_tag="JBH85_08110"
     CDS             complement(7930..9036)
                     /gene="ceg7"
                     /locus_tag="JBH85_08110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg7"
                     /protein_id="HAU0946164.1"
                     /translation="MSYSIDNPGGGDCGFYALAIGLISIIQNEYKLHGKSKTYDRWKQ
                     VENIYGVRLQDILNIDLTKLHYSPYTYKSELLFLLQMSLRNIAVIVNKEDLVKRIIEE
                     GRSKDQTKIEGSNAYCKFMELVQLYLYRRGSLERISQFNELALSPEIVQTARDIARML
                     RPILRNQPFHQAQKIENAFVKEVLLNDVLSGNTINSNSIILKSLEKIKEQGRWATHDD
                     LKEIAELLKINLNVVGQPNGKPIPEYPTVTLKNLSNTHWITQVESLQGPRQYSTPSKR
                     AFGYETLSDRAVPLKEEQTLDRAFRTETQSERTRRYNQHFETLFDTLSPYGFFPHVQS
                     KRNVHVFGKAQTGLESDEALAAQLQEAELRRILY"
     gene            complement(9219..10616)
                     /locus_tag="JBH85_08115"
     CDS             complement(9219..10616)
                     /locus_tag="JBH85_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0946165.1"
                     /translation="MSCFPSGKNKLVVLCLLLMLSFKCFPIPGKPLLLDAVLKSVDRS
                     YPQIVIARLEIRKAEGDYVNALGKFDPSFDVNPRFQPVGGYINNYADNLFNVPTLYNG
                     LKLFGGYRIGRGDWPIYYQNYLTNSGGEYRAGLSLPLLRDRRIDKERTELFTREETIR
                     MKQQDAAATKIKIYQETIKAYWQWVEAGFQLRTFRHLLNLAKERQNAIIQQAQQGDLP
                     RLAIAENLQLIVQREQLVNQGEMLLAQAGINLSLYYRDAKGKPQKPDESQLPATFPAQ
                     PIRVSNSIAQLQRHPVLRKLENYSKIVKLKQNLARNELLPNLDATAYTFKQYGTGGYP
                     LLIPQAAMIGVNFKFPIFQREARGKLISTTSELQQVQTEMKFTYEQLNNELSNLLVAI
                     RIYQQQVVLLNKELNLARQVEKGETKRFYEGDSTLFLVNQREQTTAQVKLNWINAEIN
                     LQEATALARFFSSTQ"
     gene            complement(10613..11599)
                     /locus_tag="JBH85_08120"
     CDS             complement(10613..11599)
                     /locus_tag="JBH85_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HAU0946166.1"
                     /translation="MKLHAYSMISKLPKPQKIAKIIFIVFIAIILFLSFTPWQQFALG
                     NGKVIAFSPTERQHTVNSPVSGRIKKWYVDEGMRVKPGDPIVDITDNDPELLSRLEVE
                     KKAILLRIEAAKQAIAAGKANVDRQKKLYEQGINSRRQYELAQIEYAKYQNDLAQANI
                     DKVNVDVRIARQKTQIIKAHVAGIIFRRLTGQESVVVNAGDVLAQILPETESRAVELW
                     VDGNDIPFVRLNQKARLQFEGWPAIQFRGWPEIAVGTFGGTVSFIDPTDNGFGLFRVV
                     IVPNEPWPSVRFLRQGVRVHGWVQLGQVPLWYELWRQYNGFPPESDRENKAS"
     gene            complement(11596..13185)
                     /locus_tag="JBH85_08125"
     CDS             complement(11596..13185)
                     /locus_tag="JBH85_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0946167.1"
                     /translation="MNAKPINSIIDVLDRQTISSIAMISVIISLLSLSIPIAAQTLVN
                     LIAFGKLLQPVITLSLMVLILMMALGALHIWQIVIIEVIQQKLMVKVSLSLTRHFTHM
                     SLDNFSTHHGPELVNRFFEIVTIKKSLASLLLYGINLGLQLFFGLLLILIYHPLFLLF
                     DIFIILGILLIIFIPYKKALDSAKKECSEKHVVGAWLEEILINRYLFRFSLYHRYVTQ
                     QTDKKLVAFLKARNTHFKQLIKHQIGFYTLSALASSLLLGLGGYLVINNQLSLGQLVA
                     AEIVLGALIYSFRRFGALLENYYDLVASENKIDAVLNLSLEQVKEDEHGELLTPINSI
                     QLEMDSKNKALIAVDKPLLVFSEKSDLCQLFVEQLFGFQDPASLHVLINEIPCARKNL
                     ISLRRFSLLIAEPQWFTGSIYDNLVLNHRNVPNKIIIEQLKNVGLADKIIQLPEGLRT
                     ILYEWQDVFTLVELTKLMLVRALLLQPELIVIDRAFDILNHQEVNEMMELVLSLKNTL
                     LAIVSQRSDFNYLNNRLVISS"
     gene            complement(13227..>14074)
                     /locus_tag="JBH85_08130"
     CDS             complement(13227..>14074)
                     /locus_tag="JBH85_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0946168.1"
                     /translation="IDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIE
                     KPLINRGRELSLTTDGEIFLGYAKRIYELHRESLDRFKAPELQGEIRFGLPEDFASII
                     LSDVLVEFSRLHPRVLLNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSESIYVCTE
                     PVEWIGKKELLPLLDKPGPIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGK
                     MAAVRAGLGITAIQRSMIPNYLERLDYDFLPILNDVHVSLLKKSGSNKAIESLEFFIL
                     QKLKY"
BASE COUNT         4277 a         2811 c         2653 g         4333 t
ORIGIN      
        1 cattttttga gaaaggcagt atgtgcttgt aacgcctggc ttaggaagaa atcttattag
       61 ggacaaaccg ctggctctat tgtgcagacc cagtttcaaa ataggcattt gcagaaaatt
      121 aacctttctc tatagcaacc agaacccctt taaatagagg aaagccatgc tgtatagtaa
      181 ttatcgattc taccttgcaa aagatgccca acttctcaac ccggaagaat ccagagaagc
      241 aattgagcag attttagcta aaactaaaga gttggagtta ataagagtag ctgtcgattt
      301 gactagttca aataaaagca tcagcttatt gagcgcatcc aaagagaatc atgtcataaa
      361 aaccaaagtg acccagattt taaaggagca gggcctttct gtaatagaca tgatggaagt
      421 ggaagtgctc caggatattg aaaaaataga gcatcaccat cctactcata agtctaagaa
      481 cacacatctt catcccgtta aaaagcacca aaaaaaagca aaacatgacc attctcatgg
      541 gcatgggcac caccatggac atcatcatga aaatcattgg atcaaagcag cattaggttt
      601 gatttgggga attggattac ttgttctttc tattgggact tttaatattc ccttggttgc
      661 ttactatgtc attacaggac ttacctcttt gatgactttg tatttgggcc acacagttta
      721 tcaatcagcc tggcaagcat tgaaagaaaa aaaatgggac accactactt tatactcaat
      781 tagcactcta actattcttg ctgtttctat tgcgagcgtt tttgtccctg gcctacccat
      841 gatgtttgag gcagcccctc tggttttagg cttttggcat ttaggtgaag gaattgaaca
      901 tactctggtc ggtaaaatca ataaaaaatt ggatgtccgg gattgtgtac caccattagt
      961 cctgttaaaa ggtaatccgg ataaagagat ttcagtcaag acattaattc ctaacgacat
     1021 gattatcgtt aaaaaaggac aggtcattcc tgttgatggt gtcttaacgc aaaaagcgct
     1081 cctttatacc acaagaattg atggctcgcc caaactcaaa gaatttcacc ctggggatgt
     1141 tgtaaaagct ggcatgcaat tggcagatca tattccttct ctggaaatgc aggttaccaa
     1201 aacttatcaa aattcttatt tgtcattgat tgccgaaaac attaataaag cgaatgatga
     1261 gaaagcgcct atcgaaatgt ttgcagacaa ggtattgaaa tattttattc ctggtttgat
     1321 tgcggtagcg ctcctatcgg ggattgtgat cggttcgttg tttaatccag cactggctat
     1381 tcaatgcgtc gtgtctgttc tggtaagtgc ctgcccgtgc gctttgagtt taattacccc
     1441 aatggcagtt aaaatcggta tgaaaaaagc ctctgaaaac ggcatccact ttaacaacgg
     1501 taaagccttg caagcagcag ccgacatcga taccgttgtt tttgatttga atggcactct
     1561 gactcagggc aaaatggtgg tgaaatcatt gcatattact gataaaaagt atttgcgccc
     1621 tattgcatta ctggaaagcc agtcggatca tccagtagcg aaaattatta aatcttacat
     1681 ggaacagcaa gatacggctt caaccgaacc attagaaata acgtcaattg ataagagtca
     1741 tcattccggc atgaaaggta ttattaatgg tgaggtcttt attataggga ataaagacat
     1801 gcttgccgcc aatggaatta cctctatcga caaaccctat gataatcctg aaaaaggttc
     1861 tgtttatatt gtgcgtggga caacggtgat aggtcaaatt gccttaattg atccattgcg
     1921 agaggatgcc attgctacag tgaaacaatt gaaacgtctt ggaaaatccg tacatatttg
     1981 caccggggca gatcaagcta ctgcagaaaa atatgcggca ttattaggca ttcccaagga
     2041 taatatctgt gcgaacactg tgggggctgt cacgaaaaag ggggaagtat ccaaaaccag
     2101 ttatattcaa caattaaagc aaaaaggctt taaagtagct atggttggtg atgccgctaa
     2161 tgacgctacg gcaattgcct attccgatat aggcattgct gttaaatcaa gtatcggtga
     2221 ctccataacc gaacaacatg ccggcatagt cgtacaacaa ggcttattat ttcctatagc
     2281 aacagcattt gatgtagccc aaaaaaccaa acaaaatatt ttccaaaacc tgttcgtgag
     2341 cctaagctat aactcaataa ttacgcttgt ggcggcgggg ttgtttgtgg cattaggttt
     2401 tgcactaaat cctgtgctgg gtgtcgcatt gatggtgctt gaatccacta ttgttttgac
     2461 gaacttatat cttttcaagc aacaagatat tgtgtcctca acatcatcca atgccaataa
     2521 tgctgtagag atcgagcccg ctgcaaatac aacctcaaag gtcttgcatg ctttagggca
     2581 tcgttcccag cctcaagaaa atttagcagt tgtgacagag tctaaaccag tcaatcccaa
     2641 agtaataaat ttgtttgcac ctaaagaaca ttcttcgtat aggcctgatg ccactcaaca
     2701 aaaattgggg tgcggcatct gttgatcaag cagtactgga aattgccttg attttctact
     2761 tcaaggcagt tgttacgata gccatcattt cgttaataac tgttttttgg actatactct
     2821 tatcaaggcc atgcaaagca tcaagccata aaattaggat gattcaatgc catgaataaa
     2881 acttggcatc aaaccgccac tggaaaccgc tccattttaa gtaatttgcg attaagcaga
     2941 actctactta atatcatctt tattattgcc ctttctctgc ttttaatcat caatattatt
     3001 tcttataacc aggtcaaaaa tttaatcttc gccagtaact gggtttctca tactcatgaa
     3061 gtcatccaaa ccatagatac atgcctttat gatatagtag aaattgaatc tcgccagaga
     3121 ttttacttga ttcgaggttc aagctctcag cttatggctg atatagatga tatgaaatca
     3181 acattacaac tgaatttaga caaacttgag caattaacca gggacaaccc cgaacaaaac
     3241 aaacgaatcc atcgttttat tgatttggtt aaacaaagat taaatttgtt aaaccaactt
     3301 gtacagttaa agggaagcgg caaactcgat acacaagaag gttatgattt acttaaccaa
     3361 agtcaagaca tgtcacatca agttaaaagt cttggacaag aaatcaaatc cgttgaattg
     3421 gtgttgctat cagaaaggaa tactggtgtg gttcgctggg cagttaccag tagttttatt
     3481 ttaatatccg gaggtattgc aagcatcctg tttttaacgc tcgcttttat tctggcaaat
     3541 attgaattgt caacacgcag aaaaactgaa ctacagaatc aaaatacgca aatacggctg
     3601 aagaaaatta tagaaagtgc cagtgatatg atagcagctt ttggcaaaga ccagcgattt
     3661 attactttta atgaagctta tcagcgtgag tttaaacgtc tttttgataa atccataagc
     3721 atcaatatgt ctctggaaga agctttcaat aatgctcctg aaaacaaaaa aaaattagtg
     3781 caatcctgga aagaatctct acaaagagat gaagaaacca aaaatatcga agtgaataca
     3841 gaacaggaaa agactattta tgaaatgacc tccaaactca tccaaaacgg cgacaatgaa
     3901 attaaaggtg tggtacacag cgttcgcaac attaccaaac gggtgcaaga acatactgaa
     3961 ctacaagagt cgtatgaaaa actggctaat ggaatgaaag aactgcaaga gaaaaatgaa
     4021 caaattactc tgctggttga gatgagtgac atcatgctgg cttgcggctc ccaggaagag
     4081 ctaagtgagg taatggcgaa atactcccaa cgactactgc aattttcaag cggctacctg
     4141 tttatcatgc atccttccaa aaattatttg gaaaaagcag ccagttgggg taatcctcac
     4201 ccgcacgatc tgacttttac cccagagcaa tgttgggcta tccggcttgg tcgaattcat
     4261 tatgcaggtt catctcgtat cgaattgatg tgtagtcata tgatgtttga cgagcaaccc
     4321 gagttgtctc tgctttgtgt acccctaatg gcccaaaatg acatttacgg cttgttatac
     4381 cttgaagttg gcctaaagtt tgatgaaaac cagcaattac taataaccgc attcgcagag
     4441 cttaccgcct tggctttggc aaatgtccgc cttagagaaa atttacgcta tcaatctatc
     4501 cgtgatccac tcactggatt atacaatcgc cgttatctgg aagattttct atttaaacaa
     4561 ttacatcagg ctgaacgaac aaaagcctca tttgccattt taatgctgga tttggatcat
     4621 tttaaaaaga tcaacgatac ctttggtcat gacgcaggag atcttgtatt aaaagagctg
     4681 gggcaaattt taaacaatga tattcgcctc ggtgatattg cagcccgata tgggggagaa
     4741 gaatttgtcc tgctgctcta tgatattaat gctcaagccg ctaaaatgaa agccgaaaat
     4801 ttgcgttcgg ccatttccaa tttacaggtt aaatacggag cacaacctgt tgggcagata
     4861 acggcctcaa tcggaatatc cgtctatcct gacgatgcca aatcacctgc tgaagtgatt
     4921 gaagcagctg ataaggcttt ataccaagcc aaaaacaaag gcaggaataa ggtaatttta
     4981 ttctcggaaa tatcaccctg attttgattg cgactcctga cctaaatgtt gtggtgtttc
     5041 ttatgtccga tagagtgttt catgttttat atgagttttg agagcaaaac aatagatact
     5101 atactgcata gcatccggta tttttaatag caacccggcc tacgataata tataatgcgc
     5161 agccatcagg cataattact cgtatccatg ctctataaag gaattatctc gaatgtttag
     5221 caaagcccta atcagtgcaa cctataaaaa tggaaaaccc ggccaactta cagaagaaca
     5281 tgaaaaagca gagcatcacc gctttaagac agactatctg tttaaaaatg cagagatctc
     5341 taaagactta tatgcttcac gcttgatcca gcattttttg atcattaaag ccatagaaac
     5401 aaaattacaa aatttgtcaa aaacagaaca gtcagaaatc agcgcatttt ttgctttatc
     5461 ttatcttgag caattatggc gtactaccgc tatagaaaat gatttacgac aactaaacat
     5521 taatcctgat gaaattcata aggatgagat gacaaaaaca accgaaaatt accttgaaaa
     5581 catagaaaaa tttacaccca aaatacttct cgctcatttt ttattacata ttgccgggtt
     5641 tatgcatggc gggaatatta tccgctcgaa atacattgaa ccaagcaatc gcttgaccac
     5701 ctaccaaata acagccgatc aatatgattt ttctgctgcc atctcctttt tatcctcggg
     5761 aaaacattca ccgctcgctc tttatcagga tatgatgaaa caaatcgata acattgttct
     5821 aactggtgat gagtatcaag agcttcttga gcaatgcaaa ggcatctatg aaaccatgag
     5881 caatatctac gatgatttat gtgatatgca cactcatcac ctgaagctgc ccacttactc
     5941 acttgcggct atcagcgtca gtctggttgc acttggatta attctaaaac tattgatgga
     6001 tttcttaaat ccaatgacga atcctatagc aaacgcccct cgttaaggct catcgtcaga
     6061 atgttattgt ggtctagata ttaagattta caatgattta tttctttata tataatcatt
     6121 acccactttt atagaaattt gaacaatatc gaacagatag tgttgttttg ataaacaaat
     6181 ggaacagtaa cagatgttaa aacgggatat ttcaaccctg aatatattag ttgcatcagc
     6241 tggtggaatg attggttcag gttggctgtt cagcccattt attagtgccc aaatggcagg
     6301 cagtaattct ctgataagct gggttattgc agcaatattt atgttgttta ttgccctacc
     6361 gctttgtgaa ctgggaacga tgtttccagt ttccgggggt atgtctaatt atcctactta
     6421 cacacacggt cgagaagtgg gttttttatt cgcatggaca tcctggttat cttatgttgt
     6481 tatgacacct attgagatac aagcaatttt gcaatattca agtcattttt ttccaatatt
     6541 aatcgacaat catagcgaat cactcacact gtccaattat ggttatcttg ctgcagttgg
     6601 gattatgttt ttcgtagtta ttttgaattc ttatgggatt aagtttttag ccgagtgtaa
     6661 caagtatgcc agcgtcatta aatttgtttt gccgagtatc gctattatct cactgttaaa
     6721 gcaatcaccc tctcttgcta atgttaatat taatctgtca agcaaagaac actgggtaga
     6781 gatatttacc gctctttctg caggcggggt agcttttgct tttacagggt ttcaaaatgg
     6841 tttaatcctg gcaggagaag ttaaaaatcc acaacgaaat attcctattg ccatacttgg
     6901 cgcggtattg gttggcttta ttctttattt tatgttgcag ttcagtttta tagcggcggt
     6961 accacaaaag tatttggctc aaggttggca cgcattgagt taccccggtg atgaaggtcc
     7021 attggttgga ttaactcttt tgttaggact tggcattgtt gctactctgt tattgtttga
     7081 cgccgctttt tctccttttg gcacgacttt agtttatacc gcagctacat ctcgtatttt
     7141 gtatggcatg gcattaaacc aacatttgcc caagtttttc ttaaaggtca accgccataa
     7201 cataccttac gtaacacttt atgcaaatct tttggttggt tcttttgcat tcttaccctt
     7261 tccgggatgg caaaaactag tggcattcct ttcatcagca agtattttat cctacggaat
     7321 tggcccgatt tgtctcttgg ccatgcgtaa aatgcacccc catatgaata gacccttcaa
     7381 gctcgcaaat agtattttct tgtcacatat cgccttttat atatgtaatc tcatgttgta
     7441 ctggtgtggt ttttctatta tttggaagct aaacttagca ttgcttatgg ggcttggtat
     7501 ttactttttt taccatcgct atatttcttt gagaaatggc tcgcctctgg tgtggtttat
     7561 catgtacatg ggatcatttt ctattatttc ttatttagga tcttttggcg gcattggttt
     7621 actgaaattc cctttcgatt taatctgctt cttgccttat agtattttaa tactttacat
     7681 gtctcaagtt ttagcgacac cccgtcatga caatgacatg attggtaatg ttacagaatt
     7741 gccagtatac aattcttgag gtagcaaagc gacaaagtaa aaacgcttcc tgattatcct
     7801 tgtctgtttt gtagttcact gtcatgactt cttatgggta aaatgcatca agggtaactt
     7861 gcctgcttcc tgccaaggta ccctgatgca tattgagttc ccaacatttt ttacgataaa
     7921 gcgatcgcat cagtataaga ttcgtctaag ttccgcttct tgtaattgag ctgccaaagc
     7981 ctcatcagac tccaaacccg tttgcgcttt accaaaaacg tgaacatttc ttttactttg
     8041 aacatgcgga aagaaaccgt aaggtgataa agtatcaaac agtgtttcaa agtgttggtt
     8101 gtaacgtctt gttctctcgg attgagtttc ggttctgaag gccctgtcaa gagtttgctc
     8161 ttcttttaaa ggaacggctc tgtcagatag agtttcataa ccaaaagctc gcttactggg
     8221 tgtgctgtat tgtctgggtc cctggagaga ttctacttgt gttatccaat gtgtattact
     8281 caggttcttt agagtgaccg taggatattc cggaataggt ttgccattcg gttgtccaac
     8341 aacgttgagg tttattttaa gtagctcggc aatttctttc aaatcatcat gcgttgccca
     8401 tcttccctgc tctttaattt tttcaaggct ctttaaaata attgaatttg aattgattgt
     8461 attgcctgat agaacatcgt ttagcaagac ttccttaaca aacgcatttt ctattttctg
     8521 tgcctgatga aaaggttgat tcctgaggat tggtctcagc attctagcga tatctcgcgc
     8581 tgtttgaacg atttccgggg agagggctag ttcattgaat tgacttattc tttccagaga
     8641 accccttcga tacaaataaa gttgaaccaa ttccatgaat ttgcaataag catttgatcc
     8701 ttcgattttg gtttgatctt tacttcgccc ttcttcgatt attctcttga ccaaatcttc
     8761 tttattcaca atcacggcaa tatttcgtaa agacatctgc aatagaaata ataattcact
     8821 tttataagtg tagggtgaat aatgcagttt tgttaaatcg atgttaagga tgtcttgcag
     8881 tcgtacgcca taaatatttt cgacttgttt ccatcgatca taagttttac tttttccgtg
     8941 aagtttgtat tcattttgta tgatgcttat taaaccaata gcaagagcat aaaatccaca
     9001 atccccgcca ccaggattat ctattgaata tgacatctgt atactccctt ttaggattaa
     9061 tgatttaatg tttcagtcaa gcattataaa atatgaacat taagtaaaca ttatgtaaca
     9121 tatgccaagg gggagtgcaa gtatacaata attatctttt gcctcgcctg tgggtaagca
     9181 agctatttat caattgggtc tccaattgat atccgttatt attgcgtgga agaaaaaaat
     9241 ctcgctaaag ccgtagcctc ttgtaaattg atttctgcat taatccaatt taacttgact
     9301 tgcgctgttg tttgttcacg ttgattcact aaaaaaagcg tgctatcacc ttcataaaat
     9361 ctcttggttt cccccttctc tacttgccgt gcaagattta actctttatt aagcaaaacc
     9421 acttgctgct gatatattct tattgcaacc aagagattgg acagctcgtt atttaactgt
     9481 tcgtaggtaa acttcatttc cgtttgtact tgctgtaatt cgctcgtggt gctgataagc
     9541 tttcctcttg cttcacgttg aaaaatagga aatttaaaat tcacgcctat catagcagcc
     9601 tgagggatca ataaaggata accgcctgtt ccatattgtt taaaggtata agctgtcgca
     9661 tcaagattag gaagaagctc atttcttgct aaattttgtt ttaatttaac aatttttgaa
     9721 taattctcca atttacgcaa cactggatgc cgttgtaact gtgcaatact attggatact
     9781 cgaattggtt gggcaggaaa tgttgccggt aattgacttt catccggttt ttgcggtttg
     9841 ccctttgcgt cacgatagta aagtgaaaga ttgatgccag cctgtgccaa taacatttct
     9901 ccttgattga ccagttgttc acgttgaacg ataagttgta aattttctgc aatggcaagt
     9961 ctaggcaaat caccttgttg agcttgttga ataatcgcat tttgccgctc tttcgctaaa
    10021 tttagcaaat gcctgaaagt tcttaattga aaacccgcct caacccattg ccaataggct
    10081 ttaatagttt cctgataaat tttaattttt gtagcagcag catcctgctg tttcatgcga
    10141 attgtttctt ctcttgtaaa aagctcggta cgctctttat caattcgcct gtctctcaac
    10201 aaaggtaaag aaaggcccgc acgatactca ccaccagagt tagtcaggta attttgatag
    10261 taaatgggcc aatcacctct accaatacga tagcctccaa acaatttaag tccattatag
    10321 agggttggca cattaaaaag attatctgcg taattattaa tatacccccc gaccggctgg
    10381 aagcggggat tcacatcgaa agaggggtca aattttccta atgcattaac ataatcacct
    10441 tccgcttttc tgatttcaag acgcgctatg actatctgag ggtaacttcg atcaacactt
    10501 ttaagtacgg catcaagcag caaaggtttg cctggtattg gaaaacactt gaatgacaac
    10561 atcaagagca aacataagac aaccaatttg tttttgcctg aaggaaaaca actcatgatg
    10621 ctttattctc gcgatcactt tccggtggga aaccattata ctgacgccaa agctcatacc
    10681 ataaaggaac ttgacccaat tggacccacc catgcacccg cactccttgc cgtaaaaaac
    10741 gcacactagg ccatggctca ttaggaacaa tcactacgcg gaataaacca aacccattat
    10801 ctgtaggatc aataaaggag actgtacctc caaatgttcc gactgcaatt tctggccatc
    10861 cgcgaaattg aatagcaggc catccttcaa attgcaaacg ggctttttga ttaaggcgta
    10921 cgaaaggtat atcattgccg tcaacccata attcaacagc gcgagactct gtttcaggca
    10981 gaatttgagc caatacatcg cctgcgttga caacgacact ttcctgacct gtcaaacgtc
    11041 taaagatgat acctgcgaca tgggccttaa tgatttgtgt tttttgacga gcaattcgga
    11101 catcgacatt cactttgtca atattcgcct gcgcaaggtc attttggtat tttgcatatt
    11161 caatttgtgc caattcatat tgccttctcg agttaattcc ctgttcgtac aatttctttt
    11221 gtctgtcaac attggcttta cctgcagcaa tagcttgttt ggctgcttct atacgaagta
    11281 aaatcgcctt tttctcgact tcaagacgtg acaaaagctc cggatcatta tcggtaatat
    11341 cgactattgg atcccctggt ttcacacgca tgccttcgtc gacataccat ttctttattc
    11401 gcccgctaac aggtgaatta accgtatgtt gcctctctgt tggtgaaaag gcgatgactt
    11461 ttccgttgcc taatgcaaac tgttgccacg gagtaaaact taagaaaaga ataatggcaa
    11521 taaaaacaat gaaaattatt ttcgctattt tttgaggctt gggaagttta ctaatcatag
    11581 aataagcatg caatttcatg aggaaatcac caggcgatta tttaaatagt taaaatcgga
    11641 gcgttggctc acgatcgcta acagcgtatt ttttaaagac aataccaatt ccatcatctc
    11701 attcacttct tgatgattga ggatgtcaaa agcgcgatca ataacgatta attcaggttg
    11761 taatagaaga gccctgacta acatcaattt ggtgagctca actaaggtaa acacatcctg
    11821 ccattcatag agaatagtgc gtagaccttc aggtagttgt atgattttat cagcaagtcc
    11881 aacattcttt aattgttcaa taatgatttt attaggcacg ttgcgatgat tgagtactaa
    11941 gttgtcataa atgcttccgg taaaccactg gggctctgca atcaacaaac taaaacgacg
    12001 aagagaaata aggttttttc tcgcacaagg aatctcatta ataagaacat gaagcgaggc
    12061 aggatcttgg aatccaaata gttgctcaac aaacaattgg cataaatcag atttttccga
    12121 aaacaccaat aaaggcttat caactgctat caatgcttta ttcttgctat ccatctctaa
    12181 ctggatgcta ttaattgggg tcaataactc gccgtgctca tcttctttca cctgttcaag
    12241 tgacaggtta agtactgcat cgattttatt ttctgaggcg accagatcat aataattttc
    12301 taaaagggca ccaaaacgtc taaacgagta aatcagagca cctaaaacga tttctgcggc
    12361 aaccaattgt ccaagactta actgattatt aataacaaga tagcccccca atcctaataa
    12421 aagactactc gccaaagcag acagcgtgta aaaaccaatt tgatgtttga taagctgctt
    12481 aaaatgggta tttcttgctt ttaagaaagc aaccaatttt ttatccgttt gttgtgtcac
    12541 atagcgatga tataaactaa aacggaacag ataccggtta atcaaaattt cttctaacca
    12601 tgcacctaca acgtgttttt cagaacattc ttttttggcg ctgtctaatg cttttttgta
    12661 ggggataaaa atgatcagca gaatgccaag aatgataaaa atatcaaaca aaaggaaaag
    12721 aggatgataa attagaatca gcaatagtcc aaaaaaaagt tgtaacccca aattaatacc
    12781 atacaacaat aaactcgcga gtgatttttt gatagtgact atttcaaaaa agcgattgac
    12841 caactccggt ccatgatgtg tcgaaaaatt atcaagggac atgtgggtga aatgtcgtgt
    12901 cagacttaaa ctaactttaa ccatcagttt ttgctgaatt acttcaataa tgacaatttg
    12961 ccatatgtgg agagcgccta gagccatcat taaaatcaat accatcaaac ttaacgtaat
    13021 caccggttgc aatagcttgc caaaagcaat taaattcacg agtgtttggg cagcaatggg
    13081 gatactcaat gacagtaagc tgataattac actaatcatc gcgatggatg agattgtttg
    13141 gcgatctaat acatcaataa ttgaattaat tggttttgca ttcattccct aaacatccct
    13201 tttacccttg attcttgtta atgctattaa tattttaatt tttgcaatat aaaaaattcc
    13261 agcgattcaa tcgctttatt gcttccactc ttttttaata aagaaacatg gacatcattc
    13321 aatataggga gaaaatcgta atcgagccgt tccagatagt ttgggatcat gctgcgctga
    13381 atagcagtaa tccctaaccc agcgcgcaca gctgccattt ttcccgcata acttgcgcta
    13441 ctgtaaacaa ggcgccaatc aatatggttt ttatccagtg tatcaatcac attgcctcga
    13501 taaacgcagg gtgttggtga aagcactaag ggaattggcc ccggtttgtc taaaagaggt
    13561 aataattctt ttttccctat ccactcaacg ggttctgtac aaacatagat agactcagaa
    13621 ccaacctgtt gctgagtcgt tttaatgaga attaagtcaa atttaccttc attaaaacgc
    13681 tcgatcagat tcagagtcag atcacattca acattcaata agactcgtgg atgcaatctt
    13741 gaaaattcaa cgagaacatc ggataaaata atactggcaa aatcctctgg taatccgaag
    13801 cggatttcac cttgtaactc aggcgcttta aaacgatcca aagattctcg atgcaactca
    13861 taaattcgtt tggcataccc taaaaatatt tcaccatccg tagtcagaga aagttcccgg
    13921 ccacgattaa ttagaggttt ttcaatcagg ttttccaatt tagctatttg ctgactgata
    13981 gccgattggg tgcgtccaac ccgttgtgcc gccttggtaa aactttgcgt ttcagccacg
    14041 gcgagaaagc attgtagtgt gattgtatca attg
//
LOCUS       DACVWI010000076        13946 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.076, whole genome shotgun sequence.
ACCESSION   DACVWI010000076 DACVWI010000000
VERSION     DACVWI010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13946
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.076"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            90..1271
                     /locus_tag="JBH85_08135"
     CDS             90..1271
                     /locus_tag="JBH85_08135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug DMT transporter permease"
                     /protein_id="HAU0946169.1"
                     /translation="MYHSKTSILALYQLMFRVLIFLSCLVILTPNTIADTNPCEKHSC
                     IAVIDAGSTGSRLHIYSYDTDDTNTPIHIEEIWNKKIKPGFASIQPNSVTIDAYLTML
                     LADAPIHNIPVYFYATAGMRLLPQSQQKKYYDELEYWFRQQSQWQLAEAKTITGNDEA
                     LFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQN
                     INLYVHSFLGLGQTEMSHQFLNSPSCFANDYPLPDGESGQGNAPSCKEEVTSLMNSVH
                     KVNQQIQPLLALNPVNEWYSIGGISNLASSQLFHFENSELTNQSLLQQGDNQICHQQW
                     DILNGQYPDDEYLYQYCLLSSYYYALMVDGYGINPNQTIHYIPPEQNLDWTIGVVLHR
                     A"
     gene            complement(1276..1809)
                     /locus_tag="JBH85_08140"
     CDS             complement(1276..1809)
                     /locus_tag="JBH85_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HAU0946170.1"
                     /translation="MHHVEDLISIFNSCFEKDYNTRLVRGRDEPIYLPADDKRPYHAL
                     FFAHGFFSSALHECAHWLIAGEERRKLVDFGYWYAPDGRNEEQQTLFQRVEVKPQALE
                     WILSMAAGHKFRVSIDNLNGTEVDTEAFKQSIYNQVFHYCTQGLPQRALHFRNALCAF
                     YRQPSPLRIDDFSIDEL"
     gene            complement(1820..3625)
                     /locus_tag="JBH85_08145"
     CDS             complement(1820..3625)
                     /locus_tag="JBH85_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1907 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946171.1"
                     /translation="MVRECTSFKGGLNLNFIENAEFESRKNIPPEEQRAVLIRNTLRL
                     LMMGWNTSWTELFSWETFKAIYLQRDPLLLKEFRLAFQKGFDALFTQLSGRQFNSQQN
                     EQIQLYLSNCLGYLPLFDLNPYESIKVPQRINDQWVMVDYYIKPIELTNHRGKNDLIL
                     RDDDRVFAYGLEPIDNPNAQSHLIFMGTTYPAGQGFISQLNTDLKGFETVGYSLYKNG
                     RDRIKDWILKQNSKIHVCGISLGGSLSLLLAIDMGKYLSRVDALNPAGLHDTDNKVKY
                     DKWYKIKKKPLVVVQQQGNDPVSFFGVWKKEWNILHVKPPKDKQGPNLFCDHFLNYAG
                     FAETEFTYVSAEQQNAKRKARNFWLYSLGRGVLYYFGLAPYTYLIRPVIHYIAEKWPL
                     IVFGIIPLLTIGTLIGLSTAGIIPAIVSIGTLAVFAISSGIFYLSFGLSNNEEDKNTW
                     AGMFDFILKGKEKVPDENELKLAKLHHPSTPRNPEMDIYKNETAIDLTYKQINTYYQV
                     TRCLLKQKEFLPLKDKPEKRFGGLSKKEALLASMNSASHDEVISLQIPKAKAVHIKHS
                     LTLAAKIGMENEIELKSALKKEYNQYQIGKHQRLC"
     gene            complement(3942..4553)
                     /gene="gstA"
                     /locus_tag="JBH85_08150"
     CDS             complement(3942..4553)
                     /gene="gstA"
                     /locus_tag="JBH85_08150"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HAU0946172.1"
                     /translation="MNMKLYYCRGACSLVVRIILNDLGLNFQDEEVDLKVKKTAGGDD
                     FFKINPKGAVPTLVLDNGDILTENQVILQYLADTTPGQKLLAAVGESKRYHTLEWLNY
                     ISTELHKSLGMFFNPTVSEEIKSKILTPLVMTRFAYTNTRLEKGSYLMGNEFSLPDAY
                     LFVMVSWAKYFKLDLSQFEHLTKFMDLMLARSSVAKSLQQEKL"
     gene            complement(4743..5747)
                     /locus_tag="JBH85_08155"
     CDS             complement(4743..5747)
                     /locus_tag="JBH85_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946173.1"
                     /translation="MNHMAICINKETDHFFISIGKINQHSFIMLGVYDDFQVSHLLCR
                     VGKIFDLPNQTKGIKRCLSIYSALSGAIFASSKAKIEDEGITRKRKGSAPISYQAYDI
                     SYEQYCEFVHYLESIQTESNQFECFKPLVQNGNAVYFSQTSSRVFATGSHWKELNEEI
                     HEINTGNTCRHSAIKLIEAVTKTSVPSSISSCFFINLPYKTQLDYGKPSQNIPFYVLP
                     PPPPSIHPGFNKEKRLIAKKLYHRIEQLPVLEPNSPMTKRKFNSLKNLYLQIIGSQKN
                     QSIDELLFGIQQWKEKNRVDLQTLRRTYFWDSFIVRESATMKLINEIEKDLKCAKCPY
                     "
     gene            complement(5779..7041)
                     /locus_tag="JBH85_08160"
     CDS             complement(5779..7041)
                     /locus_tag="JBH85_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HAU0946174.1"
                     /translation="MKINNLVGFLLAFCLTSLSYNISAAESPVVSHPKIQKEMSKYFK
                     VYHNKEKFTAIAVSVFIPQEKNKDALDVATFVKGTMGYPPLSQEITPLNLFDIGSITK
                     SFTSLILLQLQTEGKLSLDDPLGKWLPQYKEWKDVKLRQLLNMTSGIPNYSEDPEFAK
                     KMEDNFAAIWGDEELLGYAHPEKPIETDRANRYEYSNSNYILAGMVIEKVTQDTFENQ
                     LKQRIINTNNGLNNSFYPAGPHGPEVEKSIRDRRVHGYFYDENNKKLIDTISNDLSWA
                     GTAGAVIANTEDVGRWVQLLYHGLLIEPAFRDEALSELESVVSIKTGLPIPSVTEDEP
                     YGFGLGVGFYYDKNSRQRFWTYQGSTLGYRVMYLWNPCNNVTVVVALNGKGGSGNEKS
                     KIGNHIHELCLNIHKVIVKNHPHLQCAS"
     gene            complement(7288..8700)
                     /gene="gltX"
                     /locus_tag="JBH85_08165"
     CDS             complement(7288..8700)
                     /gene="gltX"
                     /locus_tag="JBH85_08165"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014841966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HAU0946175.1"
                     /translation="MTVRTRFAPSPTGFLHVGGVRTALFSWLYAKHHNGQFILRIEDT
                     DRERSTQESVQAILDGMAWLGLNFDEGPYYQTERYARYQQVAQQLLEEGKAYRCQCSK
                     ERLEALREAQLAAKEKPRYDGHCRNQSLPDSGIPYVIRFRNPDAGIVSFHDEVYGDIH
                     VDNSELDDLILVRSDGHPTYNFAVVIDDWDMKITHVIRGDDHINNTPRQINLFKALDA
                     PVPVFAHLPMILGEDGKRLSKRHGAVSVLQFKELGVLPHALLNYLVRLGWSHGDQEIF
                     SVQEMITSFDLKNVSRGVSSFNYDKLYWLNQHYQKSDSPESVANALQWHFEQAGIDLN
                     QGPDLKDLVAVQAERCKSLAEMCQISQYFYTDIIEYNEDAVKKHLRPVVLEPLMVLHE
                     RLKALDEWKNDKIQECINDVSLQFDLNLGKIAQPLRVAVTGSGTSPSIDMTLALLGKN
                     KSIKRLEDALEKIRARASVV"
     gene            8799..11531
                     /locus_tag="JBH85_08170"
     CDS             8799..11531
                     /locus_tag="JBH85_08170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HAU0946176.1"
                     /translation="MLKSIGIKYQLRITTLIPAFLVALLFAFFYNGLFGKDLKQHMSR
                     LGEAYIRQLLPAAQYAMLRNDYRTLQGLINASTINPEVKALAFYNADGRLIAYRGGKH
                     SIHKPFNPPDYTGDYIESKQINPFTINFIAPITIPKFNLYSSTEFKELSTPKIFQADD
                     ILGWLSIDIDTQSLLIKRYQMLIVTIFITLFGLLMGLTIHYFLSKRIYMPIARLRRSM
                     KQILSNEFETEIRVSSPGELGIIEKGCAHLQRQYLNTVRDLNHHIEIATADLQQSLEL
                     LEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPLQLD
                     YVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKG
                     IDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTL
                     LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLT
                     SEINKGSTFSARIKVEKLVAYEIEKNQTHRFAHLKIICFDDNPLHLEAIGNGLGFWGI
                     EAIRVDSFNKLSRTLTKHKDCKIAFINVNQGCERQAAELIAKHKQIPFVLISKWPIND
                     FAALGARGFLYKPISIQKLQDLIESIANENQTEKNTNQELDTLREQLRFLHPEILIAE
                     DNPVNKMLLTSLLNNNANITTVDDGEMAVTACEDKKFDMILLDLHMPKLNGLEAAKMI
                     RQKSLMNKHSPIVLITASSSDLSSIDMKKYGVDFCFQKPIDEKQLLIQILRIVDKTKH
                     AAIDWQLCVQKVSGNQALAEEFLAKFIEELYKNREEFIGLMHQKNVKGLADLAHKLHG
                     ACCFCGVPILQKRVAQLERLARRTANADNLTEAFTDLIQSIDAVISEYENQYSQ"
     gene            11628..12872
                     /locus_tag="JBH85_08175"
     CDS             11628..12872
                     /locus_tag="JBH85_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HAU0946177.1"
                     /translation="MSVKNAIYAQSGGVTAVINASACGVIQTAKLFPEQIGKVYAAKN
                     GIIGALNEELIDTSLESEEDIAKLMQTPSGAFGSCRYKLKDNGEEYQRLIAVFKAHNI
                     GYFFYNGGGDSQDTAHKVSQLGKTMGYPITCIGIPKTVDNDLPFTDNCPGFGSVAKYI
                     AISTKEAGFDVASMAASSTKVFILEVMGRHAGWIAAASGLAEQNPGEPPHIILLPEVP
                     FEPTRFLKKVKDCVNSYGYCVIVVSEGIRNKEGKFLSEAGLRDAFGHAQLGGVAPVIA
                     QLIKSELGFKYHWAVADYLQRAARHIASQTDLDQAYALGKAAVEYAVKGYNAIMPVVI
                     REQDEPYQWSIGQVPLAEVANQEKAMPPEYIAEDGMGITDACKRYLSPLIQGEAYPNY
                     KNGLPDYVRLKNQLVAKKINQD"
     gene            complement(12869..13297)
                     /locus_tag="JBH85_08180"
     CDS             complement(12869..13297)
                     /locus_tag="JBH85_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAU0946178.1"
                     /translation="MPGDVMRMKGFTLIELMIVAAILGILVAIAIPAYQDYTIRARVV
                     EGLEMASAAKLAVVETSLIDNTLPANQADTGYTSPAPTINVASIAIGNQGIITITYTA
                     NAGNGTITMVPTIDATNRILTWDCTGGTLISKYRPAYCRP"
     gene            complement(13479..13901)
                     /locus_tag="JBH85_08185"
     CDS             complement(13479..13901)
                     /locus_tag="JBH85_08185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAU0946179.1"
                     /translation="MEMVMRQKGFTLIELMIVVAIIGILAAIAIPAYQDYTIRARVTE
                     GLTLADSAKLAVSETAITNNALPPTQAATGYVSPAATPNVQSIAIGANGVITITYTAS
                     AGGGTIVMTPTLQANGDVTWTCTGGTLLAKYRPASCRP"
BASE COUNT         4434 a         2832 c         2507 g         4173 t
ORIGIN      
        1 aaaggctatt catcactcga caaaccgata tctcacaatg ttttgtccag tttatttaaa
       61 cacactctat tgacaacaaa atatacacaa tgtaccattc gaaaacttca attttggctc
      121 tatatcaact aatgtttcga gttttaattt ttctttcttg cctagtaatt ttgacgccaa
      181 acactattgc tgacactaac ccctgtgaaa aacactcttg tatagctgtc attgatgccg
      241 gaagtactgg ttccaggcta catatctact cctatgatac ggatgacacc aatactccaa
      301 ttcatattga ggaaatttgg aataaaaaaa tcaaacctgg attcgcaagc atacagccta
      361 attccgtaac aattgatgcc tacctgacaa tgctattggc tgatgcacca attcataata
      421 tacctgttta cttttacgca acagcaggta tgcgactact accccaatca caacaaaaaa
      481 aatactatga tgaattggag tactggttta gacaacaatc gcaatggcag ttggccgagg
      541 caaaaactat cactgggaac gacgaagcat tgtttgactg gcttgctgta aattataaac
      601 ttgatacatt aaaatcagtc caaaataaat cagttggcgt catggatatg ggcggcgctt
      661 ccgttcaaat tgtctttcca atgcctaaaa atgcggagat tagcaaacat aaccaggtag
      721 agctcaatat ctatggacag aatatcaatc tgtatgttca cagtttcctg gggttaggcc
      781 aaacagaaat gtcacatcaa ttccttaact ccccctcttg ctttgcaaac gactatcctt
      841 tgccggacgg ggagtcagga cagggcaatg ctccatcgtg caaggaagaa gtaacctcat
      901 taatgaatag tgtccataag gtaaatcaac aaatacaacc tttgcttgct ttaaatcccg
      961 tgaatgaatg gtacagtatt ggtggtattt ccaatcttgc cagcagccaa ttatttcatt
     1021 ttgaaaacag cgaactcact aatcaaagtt tgctgcaaca aggggacaac caaatttgcc
     1081 atcagcaatg ggatatactt aatggccagt atcctgacga tgagtacctc taccaatatt
     1141 gtcttttatc ctcttattac tacgcattaa tggtggatgg ttatggcatt aaccccaatc
     1201 aaaccatcca ttatattccg ccagaacaaa atctcgattg gacaattgga gtcgtgcttc
     1261 accgcgcttg aagcattaca attcatcaat tgaaaaatca tcaattctca ggggagaagg
     1321 ttgacggtaa aaagcacata aagcattacg aaaatgcagt gcacgctgtg gtaacccctg
     1381 ggtacaataa tgaaacacct gattatagat tgactgttta aaggcctcag tgtctacttc
     1441 agtcccattt aaattatcaa tacttaccct aaatttatgt cccgcggcca tagaaagaat
     1501 ccactctaaa gcctgtggct tcacttccac cctctgaaac agagtttgtt gttcctcatt
     1561 gcgtccatca ggagcatacc aatagccaaa atcgaccagc tttcttcttt cttctccagc
     1621 aataagccaa tgagcgcatt catgcaaagc actgctaaaa aatccatgtg cgaaaaatag
     1681 cgcatgataa ggcctcttat catctgcagg aagataaata ggctcatctc tccctctaac
     1741 cagacgggta ttgtagtcct tctcaaagca agaattaaaa atactaatta gatcttctac
     1801 gtgatgcacg aatcgttacc tagcaaagcc tttgatgctt acctatctga tactgattat
     1861 actctttttt caaagcagat tttaattcta tttcattttc catacctatt ttggctgcca
     1921 aagttaaaga atgcttgata tgcacagcct ttgccttggg tatctgaaga gaaatgactt
     1981 cgtcatgcga ggcagaattc atgcttgcta ataaggcttc ttttttagat aaccctccaa
     2041 aacgtttctc gggtttatct ttaagaggaa gaaactcttt ttgtttcaga agacaacgag
     2101 ttacctgata ataggtatta atttgcttat aagttaaatc gatcgcagtt tcgttcttat
     2161 agatgtccat ttcaggattt ctgggtgtag atggatgatg aagtttggcc agttttagct
     2221 cattctcatc cggtaccttt tctttacctt ttaaaatgaa atcaaacatc cctgcccaag
     2281 tgtttttgtc ttcttcatta ttacttaagc caaaagacaa ataaaaaatt ccactggata
     2341 ttgcaaaaac agcaagagta cctattgaaa caatagcggg aataattcct gcggtactta
     2401 accctataag agtaccaata gtcagtaaag gaataatacc gaatacgatt aacggccatt
     2461 tctctgcaat atagtgtatt actggtctga ttaagtaggt ataaggagcc aggccaaaat
     2521 aataaagaac tcctctccct aaagagtaaa gccagaaatt ccttgctttc cttttggcat
     2581 tttgttgctc agcagaaaca taagtaaatt ctgtttcagc aaatccggca taattcagaa
     2641 aatgatcaca aaaaagattg gggccttgtt tatcttttgg aggcttgaca tgtaaaatgt
     2701 tccactcttt tttccaaacc ccaaaaaaag acaccggatc gttaccttgc tgttggacaa
     2761 caaccaaagg tttctttttg attttatacc atttatcgta cttcacttta ttatcagtat
     2821 catgaagtcc tgcggggttt aaggcatcca ctctggaaag gtattttccc atatcaatag
     2881 ccaaaagcag acttaaagag cctccaagac ttataccaca tacatgaatt ttactgtttt
     2941 gttttaaaat ccagtcctta attctatccc ttccattttt atataaagaa tagccaaccg
     3001 tttcaaatcc tttcaaatca gtatttaatt gggaaataaa gccttgacct gcaggataag
     3061 tggttcccat aaaaattaaa tgagactggg catttggatt atctattggc tcaagtccat
     3121 aagcaaaaac cctatcatca tctcgcaaaa tcagatcatt ttttccacga tgatttgtaa
     3181 gttctatggg cttgatgtaa tagtcaacca taacccattg atcattgatt ctctggggaa
     3241 ctttaatcga ctcgtaagga tttaaatcaa ataaaggcaa ataaccaaga cagttactaa
     3301 ggtaaagttg tatttgttca ttttgttgcg aattaaattg cctgccactt aattgggtaa
     3361 atagtgcatc aaaacctttc tgaaaggcta atcgaaactc tttcagcaac agaggatctc
     3421 tttgaaggta aatagcctta aaggtttccc aggaaaataa ttctgtccat gaggtattcc
     3481 aacccatcat taacaatcgc aaagtattac gaataagaac agccctttgc tcttcaggag
     3541 gtatgttttt tctagattcg aactcagcat tctcaataaa atttaaattc aaaccgcctt
     3601 taaaacttgt acactcccta accataaaaa acctctgaat agcttgtttc taaccatgag
     3661 ttcaagataa ttacaatcac tggctcgcag actgctaagc gagtcattta aaaaccaagt
     3721 aactatatat tactatcaat taaaagttga aattttagca caataacaaa gattattgct
     3781 aataacttaa acctaaaggg tttattttgc ccaaaaggat gggctatcta acaagaaagt
     3841 taaaccccca tacttcaagg cattggatat aatgaatctt actcccagta ctatatagaa
     3901 gaagcaaatt gggttgtaat gaattaataa cgcaactcgc gctatagttt ttcttgctgc
     3961 agtgacttgg caactgaaga gcgagccagc ataagatcca taaattttgt caaatgctca
     4021 aactgagaca aatccaattt gaaatatttt gcccagctta ccataacaaa caggtaggca
     4081 tcaggtaaac taaattcatt tcccatcaag taagatcctt tttccaaacg ggtattggta
     4141 taagcaaaac gggtcatgac caaaggtgtc aaaattttgg attttatttc ctctgaaaca
     4201 gtaggattaa aaaacatacc aagcgactta tgaagctctg tagaaatata atttaaccat
     4261 tccagagtat gatatctttt actctctcca acagcagcca acaatttttg tcccggagta
     4321 gtatctgcta gatactgtag aataacctga ttttcagtca ggatatcgcc gttatcaaga
     4381 acaagggttg ggaccgctcc tttaggatta attttaaaga aatcatcgcc acctgctgtt
     4441 tttttgactt ttaaatcgac ctcttcatcc tggaagttta accctaaatc attgagtata
     4501 atacgaacta ctaatgaaca agcacctctg caataatata atttcatgtt cactcctttg
     4561 atgatgttta aataataata gctaagttag cataaaatgc agcaaaaaac ttgaaatgta
     4621 aaaaaccata cagtgaaaag gatgagcttg catatggttt atttaatcag accacgttta
     4681 atcaggctct ataagaagca aagattcgat atgctctaac cctgatatta tcataacaat
     4741 atttaatatg ggcacttggc gcatttgaga tctttctcaa tttcattgat taatttcata
     4801 gtagctgatt ccctgacaat gaaagaatcc caaaaataag ttcttcttaa tgtttgcaaa
     4861 tcaactcgat ttttttcctt ccattgctgt ataccaaaca gcaattcatc aatagattgg
     4921 tttttctgtg aaccaatgat ttgcaaatat aaatttttta agctattaaa ttttcgtttt
     4981 gtcattggtg aattaggctc gagcacaggc aactgctcta ttctatgata gagtttcttg
     5041 gctattaagc gtttttcttt attaaatcct ggatggatag aaggtggagg tgggggtaaa
     5101 acataaaagg gaatattttg actcggtttg ccatagtcca attgagtttt atacggcaga
     5161 tttataaaga aacaagagga tatcgatgag gggacagatg tttttgtaac cgcctcaatt
     5221 aattttattg ctgaatgtcg acaagtattc cctgtattga tttcatgaat ttcctcatta
     5281 agctccttcc aatgggaacc agttgcgaaa acacgagaac tggtttgcga aaaatagact
     5341 gcatttccat tttgaacaag cggtttaaaa cactcaaatt gattgctctc agtttgaata
     5401 gactcaagat aatgaacaaa ttcacaatac tgctcataac taatatcata ggcttgataa
     5461 gaaataggtg cagatccttt tcgttttctt gtaattcctt catcctctat ctttgctttg
     5521 ctactcgcaa aaattgcccc acttaaagca ctataaatgc taagacacct tttaataccc
     5581 ttggtttgat taggcagatc aaagattttc cctactctgc acagtagatg agatacctga
     5641 aagtcatcat acacacctag cataataaat gagtgctgat tgattttacc tatcgaaata
     5701 aaaaagtgat ctgtttcttt attaatacag attgccatgt gattcagtcc ttaacaacca
     5761 ataatgataa ataataaatt agcttgcaca ttgtaggtgt ggatggtttt taacgataac
     5821 tttatgtata ttcaaacaaa gctcatggat atggttgccg atttttgatt tctcattgcc
     5881 tgagccacct ttcccattca aagccacaac aaccgttaca ttattacaag gattccacaa
     5941 atacatcacc ctgtaaccta aagtactgcc ctggtaagtc caaaagcgct gcctggaatt
     6001 tttatcataa taaaaaccaa ctcccaatcc aaaaccgtag ggctcatctt ctgtgactga
     6061 agggataggt aaccctgttt ttattgaaac cactgactcc aattcggata aagcctcgtc
     6121 tctaaaagca ggttctatca gtaacccatg gtatagcagc tgcacccaac gaccgacgtc
     6181 ttcagtattt gcgataacag cacctgctgt gccagcccag gataaatcat tgcttatagt
     6241 atcaattagt tttttgttgt tctcatcata aaagtaacca tggactcgtc tatcccggat
     6301 tgatttttcg acttctgggc catgtggccc tgcaggataa aatgaattgt ttaatccatt
     6361 gtttgtatta ataatccttt gttttaactg attttcaaaa gtatcttgag tcactttttc
     6421 aataaccatt ccagcaagaa tatagttaga attggaatac tcatacctgt ttgctctgtc
     6481 ggtttctatt ggcttttctg gatgagcata acctaacaac tcctcatcgc cccagattgc
     6541 cgcaaaatta tcctccatct tttttgcaaa ttcaggatct tcggaataat tggggatgcc
     6601 actggtcata ttcaataatt gtcttaattt tacatctttc cactctttgt attgaggcag
     6661 ccatttaccc aaaggatcat ctagtgacaa tttgccctca gtctgcaatt gaagcaaaat
     6721 caatgaagtg aatgatttgg taatgcttcc aatatcaaac aaattcaatg gggtaatttc
     6781 ctgggacagt ggaggatatc ccatagttcc tttgacaaaa gtcgcaacat ctaatgcatc
     6841 cttatttttc tcttgaggaa taaatactga gacagcaatg gctgtaaatt tttctttgtt
     6901 atgataaacc ttgaagtact tgctcatttc cttttgaatt ttaggatgag atacaacagg
     6961 agattcagct gcactgatat tataagataa agaagtcagg cagaaggcaa gcagaaaacc
     7021 aactaagtta tttattttca tggcgaaaaa tacatcaagt taagtagaaa attggccatt
     7081 ttaacctgat agactcaaat agatccataa aataaaaaaa acaagagatg ttctgttgaa
     7141 tatacggaca cgcctattcg cattctcttc ggccaggagc aatgaaatcc agcgaaattg
     7201 tagttttcat tgcccacttg aaatatgaat acttctccaa atccagattt ttttgcattc
     7261 agcttaaaat caataaatat ttagattcta aacaacactg gctctggctc gtattttctc
     7321 caaagcgtct tcaagacgtt tgattgattt gtttttacct aacaaagcca atgtcatgtc
     7381 aatggaagga gatgttccgg atccggtcac ggcgacacgc aacggttgag cgattttacc
     7441 taaattcaaa tcaaattgca ggctcacatc attaatgcat tcttgaattt tatcattttt
     7501 ccattcgtca agcgctttta ggcgctcatg caataccatt aaaggctcca gaacaactgg
     7561 ccgcaagtgt tttttaacag catcttcatt atattcaatg atatctgtat aaaaatactg
     7621 actaatttga cacatttctg ctaatgactt acatctctct gcctgaactg cgaccaaatc
     7681 cttcaaatcg ggaccttgat tcaaatcaat tcctgcctgc tcaaaatgcc attgcaacgc
     7741 attagcaact gattctggag agtcactttt ttgataatgc tgattcaacc aatacaactt
     7801 atcataattg aaacttgaga cacctcggct gacatttttc aagtcaaagc tggttatcat
     7861 ttcttgtaca ctaaaaattt cctgatcgcc atgagaccat cctaaacgaa ctaaataatt
     7921 caataaagca tgaggcaata cacccagctc cttgaactgc aagacactta ctgcaccatg
     7981 tcgttttgac agccgtttgc catcttcacc caaaatcatg ggtaaatggg caaaaacagg
     8041 taccggtgca tccaatgcct tgaataaatt aatttgtctc ggagtattat tgatatgatc
     8101 atccccgcga ataacatgag ttattttcat atcccaatca tcgataacta cagcaaaatt
     8161 ataggtggga tgcccatcag aacgaaccaa aatcaaatca tccagttcgc tattatccac
     8221 atgaatgtca ccataaacct catcgtggaa agacactata cccgcatcag gatttctaaa
     8281 gcgaataaca taaggaattc cactatcagg aagactttgg tttctgcaat gtccgtcata
     8341 gcgtggcttt tccttggcgg ctaattgagc ctctcttaaa gcttccagtc tttccttact
     8401 gcattgacag cgataagcct ttccttcttc caaaagttgc tgcgctactt gttgataacg
     8461 agcatatcgc tcagtctgat aataaggacc ttcatcgaag ttaagcccta accaggccat
     8521 tccgtctaaa atagcctgta cagattcttg agttgaacgc tctctgtccg tatcttctat
     8581 acgcagtata aattgcccat tgtgatgttt tgcatatagc catgaaaata atgcagtcct
     8641 taccccacca acgtgtaaaa aaccagtagg gcttggggca aatcgggttc taacagtcat
     8701 aatatcttcc attgtaagga ataaaataat caagttataa tagccgagtt taccatgaac
     8761 gcaaagattc aactgctgaa ttaagactaa aaggagctat gttgaaaagt attggtatta
     8821 aatatcagct aagaatcact actcttattc ctgccttttt agtcgccttg ctttttgctt
     8881 ttttttataa cggcctattt ggtaaagatc taaagcagca tatgtccaga ctgggtgaag
     8941 cctatattag gcaattactt ccagcagccc agtatgccat gcttcgcaat gattaccgta
     9001 cattgcaggg tttaatcaat gcctcaacca ttaaccctga ggtaaaagct ttggcatttt
     9061 ataatgctga tggtcgatta atcgcttatc gtggtggcaa gcactctatt cataaaccat
     9121 tcaatccacc tgactataca ggtgactaca ttgaaagtaa gcaaattaat ccattcacca
     9181 ttaattttat agcgccgatt actatcccaa agttcaattt gtactccagc acagaattca
     9241 aagagctttc tacgcctaaa atattccagg ctgacgatat attaggctgg ttatccattg
     9301 acattgatac acaatcacta cttataaaac gctatcaaat gctcatcgtt accattttta
     9361 ttaccctatt cggtttactg atgggtttaa caattcatta cttcttgtct aaacgaattt
     9421 acatgcctat tgctcgattg cgtcgaagta tgaagcaaat tttaagcaat gaatttgaaa
     9481 ctgaaattcg tgtttcaagt ccaggagaat taggaataat tgaaaaaggt tgcgctcatt
     9541 tacaacgaca atatttaaat acagttcgtg atttgaatca ccacattgaa atcgccacag
     9601 cagatctgca acaaagtctc gaacttctgg aagaaaaaaa cattgagcta tcgctggaaa
     9661 agaaaaaaac tgaagaaaaa agtcgacaaa aatcagaatt tattgccaac atgagtcatg
     9721 aaattcgtac cccaatgaat ggcgtgattg gttttacaaa tgttttattg gaaagcaagc
     9781 tggacccttt acaactggac tacgttaaaa cgatcaaatc atcagcgcag gatttgttaa
     9841 gtatcatcaa tgatattctg gatttttcta aaattgatgc gggcaaatta aatcttgatt
     9901 gcatcccgct agacataaga ggttgcattg atgaggtttt atccctggca agccccaatg
     9961 cgcacaaaaa aggaatcgat ttaatcccga ttacagacat caatgtgccc aaaatggtat
    10021 tgggtgaccc tttaagaatc aaacaaatca tcagtaatct ggtgaccaat gcagtaaaat
    10081 ttacagatca tggatacgtt cttatacgca ctaaaatcga gcaagaaaca gataaagatt
    10141 ataccttgct atttgccatt acggatacgg gaataggtat ttcaccagag gatcaaacga
    10201 aactgtttac tgccttcaat caggcagaca ccagcatcac acgccgttac ggtggctcag
    10261 gattaggctt ggttatatgt aaaaaactat gtgaagaaat gcatgggcgt attagtctaa
    10321 ccagtgaaat caacaaaggt tctactttta gcgcacgcat taaagttgaa aaacttgttg
    10381 cttatgagat tgaaaaaaat caaactcatc gtttcgccca tttaaaaatc atttgctttg
    10441 atgacaatcc cctccatttg gaagcaatag gtaatggctt gggattttgg ggtatagagg
    10501 ctatacgcgt tgactcattt aataaacttt cccgaacatt gacaaaacat aaagattgca
    10561 aaattgcctt tattaacgtc aatcaaggat gtgagcgaca agctgctgaa ctcattgcca
    10621 aacacaagca aattcctttc gtgttaattt ccaaatggcc tattaatgat tttgcggcgc
    10681 ttggtgctcg gggttttctt tacaaaccta tcagcatcca aaagcttcag gatctgattg
    10741 aatcgatagc caatgaaaac caaactgaga aaaatacgaa ccaggaactg gatactttac
    10801 gcgaacagct tcgttttctt catccagaga tactgattgc agaagacaac cctgtcaata
    10861 aaatgctatt aacatcccta ttaaacaata atgccaatat aaccacggtt gacgatggcg
    10921 aaatggccgt tactgcttgt gaggataaaa aatttgacat gattttactg gatctgcata
    10981 tgccaaaact taatggtttg gaagcagcca aaatgatacg tcaaaaatcc ctaatgaata
    11041 aacactctcc tatcgttctc attaccgcca gtagcagtga tctgagctcc atcgatatga
    11101 aaaaatatgg agttgatttt tgttttcaaa aacctataga tgaaaagcaa ttgttaatcc
    11161 aaattcttcg catcgttgat aaaaccaaac atgctgccat tgattggcaa ttatgcgttc
    11221 agaaagtttc aggtaatcaa gcgcttgctg aagagttcct cgccaaattt atagaagaat
    11281 tatataagaa tcgtgaagag tttattgggt taatgcatca aaaaaacgta aagggcctgg
    11341 ctgatttggc tcataaatta catggcgcct gttgtttttg tggcgtgcct attttacaaa
    11401 agagagtagc tcaattagag aggcttgcaa gacgaaccgc taatgctgat aatttaaccg
    11461 aagcctttac cgatttaata caaagtattg atgcagtgat tagtgaatat gaaaatcagt
    11521 actcacaata atatttaatg aaataaggcc ataaaaactc tcttgtatga aaaccaaagt
    11581 aaaagtctgt atcaacctaa taaaatcatt ctagttatgg agacaaaatg tcagttaaaa
    11641 atgcaatcta cgcccagtct ggtggtgtga ccgctgtaat taatgcatcc gcttgtggtg
    11701 tcatccaaac cgccaaacta tttccagagc aaattggtaa agtttatgct gcaaaaaatg
    11761 gcattatcgg tgccttaaac gaggaattaa tcgatacttc attggaaagt gaagaagaca
    11821 ttgccaaatt gatgcaaact ccttccggag cttttggctc ctgccgctac aaattaaaag
    11881 acaatggtga agagtatcaa cgcttaatcg ctgtcttcaa ggcccacaac ataggctatt
    11941 tcttttacaa tggcggcggg gactcacaag atactgccca taaagtatcc cagttaggta
    12001 aaaccatggg ctatcctatt acctgcatag gtatccctaa aacagtagat aacgatctgc
    12061 cttttacaga caattgcccg gggtttggat cagtcgcgaa atacattgcc atttcaacga
    12121 aggaagctgg ttttgatgtc gcgtccatgg cggcttcatc gacgaaagtg tttattcttg
    12181 aggtgatggg aaggcatgca ggctggatag ctgcggctag tgggctggcc gagcaaaatc
    12241 caggcgaacc gccacacatt attctattac ctgaggttcc ttttgagcca actcgttttc
    12301 taaaaaaagt gaaggactgt gtcaattcat atggttattg tgtgattgtt gtttcagaag
    12361 gtatccgcaa taaggaagga aaatttctca gtgaagcagg attacgtgat gcattcggac
    12421 atgctcaatt aggtggtgtt gcacctgtca tcgctcaatt aattaaatct gaactgggtt
    12481 ttaaatatca ttgggcagtt gcagattatc ttcaacgggc agccaggcac atagcctcgc
    12541 aaactgattt ggatcaagct tacgctttag gtaaagctgc tgtggaatat gccgttaaag
    12601 gatataacgc gattatgcct gttgtcattc gtgagcagga cgaaccctat caatggtcta
    12661 taggccaagt ccctctggct gaggtagcta accaggaaaa ggctatgccg ccagagtata
    12721 tagctgaaga tggcatggga attacggacg catgcaaacg ttacttgtcc cctttgattc
    12781 aaggtgaagc ttatccaaat tacaaaaatg gattgccaga ttatgtccga ctaaaaaacc
    12841 agttagtggc taaaaaaatc aaccaagatt aagggcggca gtaggctgga cgatatttac
    12901 taatcagggt accaccagtg caatcccaag tgagtattct gttagtggca tctattgtgg
    12961 gaaccattgt aatggtacca ttacctgcgt ttgcagtgta ggtaatggta ataatgcctt
    13021 gattaccaat ggctatagag gctacattaa ttgttggggc aggactggta tagcccgtat
    13081 ctgcctgatt tgctggcaaa gtgttatcaa ttaaactcgt ttcaacaaca gctaatttag
    13141 cggccgaagc catttccaat ccttcgacca cccgtgctct gatggtatag tcctgatagg
    13201 ctggaattgc gatggcaacc agaatcccaa ggatagcggc aacgatcatc agctcgatta
    13261 aagtaaatcc tttcattctc ataacgtcac ctggcattgc atctaactga tatcacgcaa
    13321 attcaatgcc aactctatga tttaaaaatc cttctgctga ctaaatagct tgacaagctt
    13381 ctttcaaaac atttctgtta ggtaaataag tcattggtaa aacatgggca aataaaaaac
    13441 cgccattgaa aggcggtttt tatagtggct ttatcctatt atggtctgca actggcaggt
    13501 cggtatttgg ccaataatgt accacccgta caagtccagg ttacatcacc gttagcttgt
    13561 aaggttgggg tcataactat ggtaccacca cctgctgaag cggtatatgt tatggtaatc
    13621 acaccgttgg caccaatagc aattgattgt acattgggcg tagctgcggg agacacgtag
    13681 cccgttgcag cctgagtagg tggtaacgcg ttgttggtaa tagccgtttc agatacggca
    13741 agttttgcag aatctgccaa ggtcagacct tccgtaacac gagctcgtat tgtgtaatct
    13801 tgataggctg gtatagcgat tgctgccaaa ataccgataa tcgctacgac tatcatcaat
    13861 tcaattaaag taaaaccctt ttgtctcatg accatctcca tagttaacta tccattagta
    13921 taatgcaagc ataatgccaa ctacca
//
LOCUS       DACVWI010000077        13942 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.077, whole genome shotgun sequence.
ACCESSION   DACVWI010000077 DACVWI010000000
VERSION     DACVWI010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13942
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.077"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            122..1006
                     /locus_tag="JBH85_08190"
     CDS             122..1006
                     /locus_tag="JBH85_08190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946180.1"
                     /translation="MSRTTKIGKISTNYKYSRIAMKKIAIILSLFPFLICCGLANATA
                     SQKRLPGESYQDAVKRIINNKPQNELKMLIARGTPYSKKVSLQKIDYSTVPKVSSYDE
                     MTNMFNLIRDTRFLYSPDKPDFQRRISWLYPDDGCFARAALSRIKLDSEHFVIPAKIF
                     VFGDLEMQTPYSSEGTVSWWYHVSAVVNYMGTIYVLDPAAKPEGPMLIDDWYNKIGIM
                     DKMEAVVCNPYTYDPFDRCYDATNKTDNKALNDQLKYLDKEWVRIESLGFDPSVLLGD
                     NPPWIGDMRNSTLLSYKS"
     gene            1154..2545
                     /locus_tag="JBH85_08195"
     CDS             1154..2545
                     /locus_tag="JBH85_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1667 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946181.1"
                     /translation="MEYKEVTPMIRFFIICFIFLVSHLAYANPYWDRYKVPRDSHYPN
                     LKFHYINPDSLKIVQENSGIDVLRIQTDWFEETDSYQVGTVIIESSGTPALLSRSIHK
                     PKWGSYLGVLKSRFGGDTVYYDAIGTGKEYRKLARAINLRFPVPSHDMIFELYAENPQ
                     TGLMEKVVEKNIIASELTRDNRHFNDLEVRQLLPAVKTPSLRVNIYAEGYTQSEKMKF
                     WNRAIKTVQALQSQQFPGIDYMDFYAVFNPSHKRLGVAEDLGLPVPEFDSFLGLYYPY
                     WDNFGRWYHIVYPTRENKFRQGLASAPYDYPIVLVNNSQYWGVGNYKSHTAIPADNST
                     YFTYILIHELGHFFGLNEEYEGGGRTELEFAPEMKEPWSQNITFLTTPSYSGLKWNEL
                     VNPQMSIPTPYSDWQSTPPQYGAYRGGYGDSPSHQGASHKPGLNCIMESHASFCDICQ
                     KGIMDVIRFDLGT"
     gene            2707..4110
                     /locus_tag="JBH85_08200"
     CDS             2707..4110
                     /locus_tag="JBH85_08200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1666 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946182.1"
                     /translation="MLKFVIYLSSRVQPMGKKAYIIGMGPAGLASALALLVKGYSVEL
                     IDRRSEDDVFSRKQGVFLKDDTIRDFFALSQLASKGYSLEFKDNFICKLIRPIDESNL
                     QLSAEDQLDLAFFELIEKERTVIPIAELQRYQYSKLKYIYDKGGFTFQDEEDPYTVKF
                     NNAEQQLIFHLGDTQIAKVDAENQKLTLDHNGSIQNHSFDLLVDASGKTSKSFTQLWN
                     SQNPEFAIGYEKLDNPDHNAFGVMYLSINNPPLAMIANPVLSPTEGTSFIPLDKITPL
                     KAMGWTHDYPPLIYLKYSKKNGAVYLTGEIPESILKDNNKKELKQWFDLVLQLLFNNT
                     DFKMSAPGLASVFKTDIEIADKFALLLPKGGVFCLVGDALMSANFLLGCGISNALDDA
                     NKLPDMVDNQFSQSEAEAYRNLRYLDYKDDWLFFKEHIALRLKSLQLEKQLDLSRQEL
                     ELKQRELESIQQQCSFY"
     gene            complement(4375..10140)
                     /locus_tag="JBH85_08205"
     CDS             complement(4375..10140)
                     /locus_tag="JBH85_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin"
                     /protein_id="HAU0946183.1"
                     /translation="MNKNPFSLIMNVLCSIFSTLFGKIKWNRPTWLVYLKHKSKNSPQ
                     IFWGTTLLFIVLLGAGAYGAYWYNNLPKPTYTTASITIPDITPNEENLVPNNLIIDFG
                     IRNNEFIPQSVAPINLIGKEIDEGIEMAPQIAGKWSWNSDSQLIFIPAEDWPAGQKYT
                     IHFAKNFFAPNANIESYDLSFTTKPFQATIREFKFYQDPVNAETRQAVATIEFNYPVN
                     PKNLEKNTSVVFQTIKNGKADLTAESVPFSYTYDNNKRIAYLHSANIKIEDVSRYLLL
                     TLNKNVSSSTDSAILGQSISKNLLIPDASNFLKIVSTSANIVRNDKDRPEQVLSIETS
                     LGVNESEFNKSVHVYLLPQNYPATAAEPEKSNYEWQNPGEVTNNILSLSTPLPKEVIP
                     SEQNYTTLHGFKFKAQTPRYLYIKIDKGMKGFGGFKLSNDYTAIVPVPEYPKEISFLH
                     KGSLLALSGEKKLSVLIRGVPAVKYEFARVLPDNVNQLVTQTQGDFSNPYFINPSFNQ
                     QNISQIFSEIQQYDSTDLTRQQYTSLDLGKYLASEANASGPQGLFLLQATGWDVANQY
                     ALDVKASRLILITDLGMVVKDNNDGSHDVFISSITQGLPVAGATVTILGKNGLPILSR
                     VTDEQGRANFPTLKDFIEDREPTVYLANLNNDVSFIPFNNYNRQLNFSKFDIGGIYTN
                     DQDLQNLTAYLFSDRGIYRPGDTVHVGMIVKRAFAEPQPSGLPLQATVVDARGTTIKD
                     QKVTLNDTGYIELDFTTSANSPTGQYMVYLYLVKDNHPQNLLGSTSVRISEFQPDRMR
                     ITSSFEPKPFDGWSSPTDLKAKVDLWNLYGAPAANRRVSGKILLTPQRVQFDNYPDYI
                     FADPLYDPKKPPKVFTENLAEATTNENGQAEFSLNLERFEKATYQLTFFAEGFEPGSG
                     RSVTAQTKTLVSPLPYFIGYKADGDLHFIKQNSVRNVNYIAINPQLGKEDVKNLKIQL
                     ISLRPVTTLVKKADGTYQYQSTIQSTVINTNPFEIKESGINYSLPTNTIGDYSLNVLD
                     KDDSILSQLQFSVVGTSQAPLAKNAELSIKLNKEEYQANEDIEIQITAPYTGSGLITI
                     ERDKVYAVHWFKTEAQNSVQTIRIPADFQGNGYVNVAFIRDWESPELFISPLSYSVAP
                     FNVNHDKHDIKIGLKTPELARPGESFTIDYHTDKPGKIIVFAVDEGILQVANYTTPDP
                     LSFFFQKRALEVLTQQTVDQILPKFIQDREISAVGGDEGEAALASRLNPFKRKTDLPV
                     VYWSGILDSDSTDRQLSYQIPDYFNGSIRVIAVAVANDSVGSREVSAEVRGDFIISPN
                     VPTFVAPGDEFEISTTVANNIKDSGEHAQVEVELTASPEIEVIGSAKESLEISEGNEQ
                     TVYFKLRAKSLLGSARITITAKSGDKSSKMDSTLSVRPANPFTTYINSGKSQDSQKSL
                     EVIQTLYPEHRKVEATISTSPLVLIFGLQRYLDNFPYGCTEQLTSKALPWLVMNSLPW
                     FSSESGPIHEKINTTIQMLSQRQMSNGGFSYWPGLSDNSANSFASVYAMHFLTEARAQ
                     GFNVPGEMFYNGINYLKELASHNPTDADSARIQAYAIYILTRNELVTTNYLANLQLYL
                     QQDSSKNWLKDITAVYIAATYQLLKSYSEANQLIGQYQPATNNAFTTDFYDRNIADAQ
                     YLYLVAKHFPNLLPQVSDNILMNLVKAINNDEINTVLSGFSSLALGAYPQNESAEQSD
                     KLSITEALANNQQRNIPADQNNYQKLNIDETVKTIRFNNPDKQTFFYQLVQSGFDKII
                     PTEPLKQGIEIYREYRDEKGNVIDSAVLGEEIEVHLQVRSLDNNYLSNIAIEDLLPGG
                     FEVVRDSVKTDNMDYADVREDRVNFFGWVDLTAKELVYKIKATNVGKYIVPPAYAEAM
                     YNPNTKARGSSSVITVSREED"
     gene            10306..12624
                     /gene="pbpC"
                     /locus_tag="JBH85_08210"
     CDS             10306..12624
                     /gene="pbpC"
                     /locus_tag="JBH85_08210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HAU0946184.1"
                     /translation="MLWAMRKVIKYLSIILGSLFVSGFLLLFFSPKPSLLEEFNFSKA
                     VYDDNQQLLRLILSDDDKYRLYVPLSQIPKELMEATLLQEDQYFLWHKGVNPFSMVKA
                     IWQTYVVKSRRIGASTITMQVARIRFGINSKKISGKLWQVIRALQIERHYDKDKILEA
                     YFNLAPYGGNIEGVGAASLIYFNKPVSKLGLPEALTLSIIPQNPVKRTSKNSELKKIR
                     NRLFARWLKQHPQDQEKQPLFGLPLVMQTNQNLPFLAPHFVNMVLKENPGLSQSISTT
                     LDYRLQLIVERITRHYLARKKMFGVHNAAVLLVDSRTMSIKALMGSADFFNNKISGQI
                     NGVETKRSPGSTLKPFIYGLALDQGLIHPNTVLKDVPQSFNGYNPENFDYDFMGPIKA
                     KDALVLSRNIPAIELSNQLTNPTLHKLLEQAHITQLRSESYYGLSLNLGGVELTMKEL
                     VGLYAMLINDGVWYPINSLKGVPRQKGRHLLSAEASFLVFDMLKNTPMKESNNDGSLQ
                     LPIAWKTGTSSGYRDAWTVGVFGPYVLAVWIGNFDNQANPAFIGKEIAAPLFFELINA
                     IKHERGPIARVEKYPEHMHLEKIEVCKASGMLPGRYCTDTEWTWFIPGKSPIKTDTIF
                     REVAINGKTGLRTCHIDENTRFEVYEFWPSDLLRIFRRAGIQRHTPPFFEPGCALSGN
                     SGISPQITSPQAGVSYIVHANTQSNKIIPLTAVTDAGIAHLYWFINESFVAETKSDEP
                     YLWQAKPGKYVVRVVDDRGLSDARDITIQMVS"
     gene            complement(12683..13189)
                     /locus_tag="JBH85_08215"
     CDS             complement(12683..13189)
                     /locus_tag="JBH85_08215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946185.1"
                     /translation="MIMFESFRKCLSAISMRAPYASTPGHRNAQRANAGSEVLGTTLE
                     TFDPAASIPTKLAQTLISIYSLFRFDTHVSEKLIHLLQGSIAATQMGLGIALLFTGTE
                     CEEYTDADLCKAIFLLQLLYRGTLLVGWAPSEFSKDPYAEPKVVSEDKAESEEENEDE
                     ESRNSASV"
     gene            complement(13347..>13942)
                     /locus_tag="JBH85_08220"
     CDS             complement(13347..>13942)
                     /locus_tag="JBH85_08220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946186.1"
                     /translation="FSKKERTLLFANNLWYLSEGMLGPLFGIFCERFNSSPLDISWVW
                     SLYLISVGIVVIGLGYISDFIHKEKLLVAGYALQTIFTFCYIFITSKKQLALLQIGLG
                     ISGGLSTTTWYALYARYEDKTHEGLTWGLANGLSSIYTGIALLCGGLIIAKTSFDVLF
                     IIMGCIQFLATIYVSKLIFIEHPKIIRRFRNPNLAKN"
BASE COUNT         4229 a         2512 c         2764 g         4437 t
ORIGIN      
        1 ttaaattcag cattttgaat gcttaccctg attaaaaata taagtcatta tgttttgact
       61 acagatagtt cagatgacta atagactagt cttttcaatc agttcatgct aattataaat
      121 aatgtcaagg acgacaaaaa ttggtaaaat atcaaccaat tataaatact caaggattgc
      181 tatgaaaaaa atagctatta ttttatcatt atttcctttt ttgatttgtt gcggcttggc
      241 aaacgcaact gcctcacaaa aacggcttcc aggagaatct tatcaggatg cagtgaagcg
      301 tatcataaat aacaaaccac aaaatgaact gaagatgtta attgccaggg gaactcctta
      361 ttcaaagaaa gtctctttac agaaaataga ttactcaacc gtgccaaagg ttagcagtta
      421 tgacgagatg actaacatgt ttaacctgat acgagacact cgttttttgt attcacctga
      481 taaacctgat tttcaaagaa gaatcagttg gctttatcct gatgatggtt gctttgccag
      541 agcagcactg tccagaatta aactggatag tgaacatttt gttattccag caaaaatttt
      601 tgtttttggt gatttggaaa tgcaaacacc atactcttct gagggaacag taagttggtg
      661 gtatcatgtg tcagctgttg tcaactacat gggtaccatt tatgtgctcg atcccgctgc
      721 caaaccagaa ggtccaatgt tgattgatga ttggtataac aaaattggga taatggataa
      781 aatggaggcg gtagtttgca atccctatac ctacgatcct tttgatcgtt gctatgatgc
      841 aacaaataaa acagataaca aagcgttaaa tgatcaattg aaatatttgg ataaagagtg
      901 ggttagaatc gaatcattag gttttgatcc gtctgtttta ttaggtgata atcctccatg
      961 gataggtgac atgcgtaatt ctactctttt gtcttataaa tcatgatttt ttgtgagtcg
     1021 ttgttacgat acccaaaaat taacacgctt tcgttcaatc tgacgaaata tcaagttcga
     1081 tagataaaag agtgttcatt aaactcggtt aacatttgta ggaaaatcta caagttagta
     1141 tgggatagta gttctggaat acaaggaggt cacacccatg ataagatttt ttatcatttg
     1201 ctttattttt ttggtttccc atctggcata cgccaatccc tattgggacc gctataaagt
     1261 gcccagagac agtcattacc caaatttaaa gtttcattac atcaatcctg attctttgaa
     1321 gattgtgcag gaaaattcag ggattgatgt attaagaatc caaaccgatt ggtttgaaga
     1381 aacagattct tatcaggttg gtacagtaat aatagagtcc tctggaacac cggcattatt
     1441 atcacgaagt attcacaaac ccaaatgggg gagttatttg ggagttttaa aaagcagatt
     1501 cggtggtgat acggtctatt atgatgcgat tggtactggt aaggaatatc gcaagctggc
     1561 acgtgctatt aatttgcgtt tccccgtacc ctcccatgat atgatctttg aactttatgc
     1621 agaaaacccg caaacaggtt taatggaaaa ggttgttgag aaaaatatca ttgctagtga
     1681 attaacaaga gataatcgtc atttcaatga tttggaagtg aggcaactat tacccgcagt
     1741 gaaaactccc tctttaagag tgaatatata tgctgaaggg tatactcaaa gtgagaagat
     1801 gaaattttgg aatcgagcga ttaaaactgt gcaggcatta caaagtcaac agtttcctgg
     1861 tatcgattat atggattttt atgcagtctt taatccatct cataagcgtt tgggagtcgc
     1921 tgaagactta ggtttaccag taccagaatt tgattctttt ctgggtttat attatccata
     1981 ctgggataat tttggacgat ggtatcatat agtatatcct acacgagaaa acaagtttcg
     2041 tcagggattg gcgtcagcac cttacgatta tccaatagta ttagttaata atagtcagta
     2101 ctggggtgta ggtaattaca aatcacacac agcaatacct gctgataatt caacttattt
     2161 tacctacatt ctgatacatg aattgggtca tttttttgga ctcaatgaag aatatgaagg
     2221 tggtggacgg actgagttgg aatttgcccc tgagatgaag gaaccgtggt cacaaaacat
     2281 cacttttctg actactccaa gctattccgg attaaaatgg aatgagttag tcaatccaca
     2341 aatgtctatt cctaccccct atagtgactg gcagtcaacc cctccgcaat atggggcata
     2401 tcgtggcggc tatggagatt caccatctca tcagggtgca agtcataaac caggcttgaa
     2461 ttgtattatg gaatctcacg catcattttg cgatatttgt caaaaaggaa ttatggatgt
     2521 aattcgtttc gatttgggaa cctaaattag gggttccaga ttggaccccc cccagctcag
     2581 agttcagaaa aattaataat caacatgcta ctcttcctat ataaaaagag agtcaatctg
     2641 agttttatcc tgcacagcgg aacactggca atagaaatgc tcacctaata atttcttaac
     2701 aattaaatgc taaaatttgt catttattta agtagtagag tccaacctat gggaaagaaa
     2761 gcatatatca ttggtatggg gccggctggc ttggctagtg cacttgcatt attagttaaa
     2821 gggtattccg ttgaattaat tgaccgccga tctgaagatg atgtttttag tcgcaaacaa
     2881 ggggtattct taaaggatga taccatcaga gatttttttg ctctaagtca actggcaagc
     2941 aaagggtatt ccttggaatt caaagataat tttatctgta aattaatccg tcccatcgat
     3001 gaatccaact tgcaattgag tgcagaagat caattggatt tagctttttt tgaattaatt
     3061 gaaaaagagc gcactgtaat tcctatcgca gagttgcagc gttatcagta tagtaagttg
     3121 aaatatattt atgacaaagg tggttttact tttcaggacg aagaagatcc ttatactgta
     3181 aaattcaata atgcagagca gcagctcatt tttcacctgg gagacacgca aattgccaag
     3241 gttgatgctg agaatcagaa gttaaccttg gatcataatg gtagcataca aaatcacagt
     3301 tttgatttgc tggttgacgc atccggaaaa acatcaaaat catttactca gttgtggaat
     3361 tcgcaaaatc cagagttcgc aattggttat gaaaagttag ataatcctga tcacaatgct
     3421 tttggtgtga tgtatctgtc gatcaataat ccgcctttgg cgatgatagc taatccggtg
     3481 ttaagcccaa ctgagggaac cagcttcatc cctttagata agattactcc gttaaaggcc
     3541 atgggctgga cgcatgatta tccaccttta atttatttga aatattcaaa aaagaatgga
     3601 gctgtttatc tcactgggga aattcctgaa tccattctca aggataataa taaaaaagag
     3661 ttaaaacaat ggtttgactt ggtattgcaa ttattattta acaatacgga ttttaagatg
     3721 agcgcccctg gtttagcttc tgtttttaaa acagatattg aaattgctga taaattcgct
     3781 ttgctccttc ccaagggagg tgtgttttgc ttggttgggg atgctttgat gtcggccaat
     3841 tttttattgg gttgtggcat tagcaatgct ttggatgatg ctaataagtt accagatatg
     3901 gttgataacc aatttagcca aagtgaagct gaagcctatc gtaatcttcg ctatttagat
     3961 tataaagatg attggttatt ttttaaggag catattgctc tcaggctaaa atctctacag
     4021 cttgaaaagc aattggattt aagtaggcag gagctggagt tgaagcaacg agagttggaa
     4081 agtatccagc aacaatgttc attttattag tctttatccc ccctgcggca gggcaaaacc
     4141 atactttgat tatataatgt aaaacttaag ccattaccat gccgggctga ggaatctatt
     4201 ctttaagatc caacagtgtt tgctacaaaa tagattcctc cctaaatagt tttatctcat
     4261 cctcaagcta tgataagtat ctccttcatt tgtcggcatg agcaaatatg agggcaatta
     4321 atatttatta gcaagcaaag tcaagaatca aaatctgact ttgcttgcca gcaattaatc
     4381 ttcttctcta gacactgtaa tgactgatga agaacctctt gccttcgtat ttgggttata
     4441 catggcttct gcgtaggctg gtggaactat gtatttacca acgttagtcg cttttatttt
     4501 ataaactaat tcttttgcag ttaaatctac ccagccgaag aagttaactc tgtcttcccg
     4561 gacatcggca taatccatat tgtccgtttt tactgagtct ctaacgacct caaacccacc
     4621 tggcaagaga tcttcaatgg caatgttgct cagataatta ttatctaatg atcggacttg
     4681 caggtgtact tcaatttctt cgcccaaaac cgctgaatca atgacattgc ctttctcatc
     4741 tcgatattct ctgtagattt ctatgccttg ctttaaaggt tctgtcggta ttattttatc
     4801 aaaccctgac tgaacaagct gataaaagaa tgtttgtttg tcaggattat taaagcggat
     4861 tgttttgaca gtttcatcaa tatttaattt ttgataatta ttttgatcgg cagggatgtt
     4921 tctctgctga ttgtttgcca atgcctctgt tatggacagc ttatcagatt gctctgctga
     4981 ttcattttgt gggtaagcgc ccaaagccag gctagaaaat cctgataaga ctgtattgat
     5041 ttcatcatta tttatcgctt ttaccaaatt catgagtata ttgtcgctta cttgaggcag
     5101 taaattagga aaatgttttg caacaagata gagatattgc gcatcggcga tattgcgatc
     5161 ataaaaatca gtcgtaaatg cattatttgt tgctggttga tattggccaa tcaattgatt
     5221 cgcttcacta taacttttta ataattgata ggtggctgca atgtaaactg ctgtgatgtc
     5281 ttttagccag ttttttgaag aatcttgctg taaatacaat tgtaaattgg ctaaataatt
     5341 tgtagtgact aattcattac gggttaaaat atagatggca taggcttgaa ttcttgctga
     5401 gtctgcatct gtgggattat gactagccaa ttctttaagg taattaatgc cattgtagaa
     5461 catctctccg gggacgttga atccttgtgc tcttgcttca gttaagaaat gcatggcata
     5521 aactgatgca aaactattcg ctgaattgtc acttagacca ggccaatagc taaacccacc
     5581 attagacatt tgtctttggc ttaacatttg aattgtggta ttaatttttt cgtgaattgg
     5641 gccactttcc gaactaaacc agggtaaact gttcataacc agccagggca gggccttgct
     5701 tgtcaattgc tccgtacaac catatgggaa attatccaaa tatctttgta atccaaagat
     5761 tagaactaat ggactggtag atatagtcgc ttctaccttg cgatgctccg gatataatgt
     5821 ctggataacc tctaacgatt tttgagaatc ttgtgatttg ccactattaa tgtatgttgt
     5881 gaaaggattg gcaggcctga cgctgagcgt actatccatc ttgcttgatt tatctcctga
     5941 tttggcagtg atagtaatcc ttgctgatcc taacagtgat ttagcgcgca atttaaaata
     6001 cacagtttgc tcattgcctt cgctgatttc cagagactct ttcgcactac cgattacttc
     6061 aatctctggt gatgcggtaa gttctacttc aacttgagcg tgttctcctg aatctttaat
     6121 attatttgcc acagtggttg atatttcaaa ttcatctcca ggcgcaacga aagtgggcac
     6181 attgggactt ataataaaat caccgcgaac ctctgctgaa acttcgcgag atcccacaga
     6241 gtcattagcg actgccacag cgattacccg aatggacccg ttaaaataat caggtatttg
     6301 ataagataat tgcctgtcag tactgtctga gtcaagaata cctgaccagt aaacaactgg
     6361 taaatcagtc tttctcttga atggattgag gcgactcgct aaagccgctt caccctcatc
     6421 acctccaaca gcagatattt ctctatcctg gatgaacttg ggtaaaatct gatcaactgt
     6481 ttgttgggtt aacacttcta gtgctcgttt ctggaaaaag aaactgagtg gatcgggtgt
     6541 agtataattg gcaacctgca atattccttc atccactgca aatacgatga tcttaccggg
     6601 tttgtctgtg tgataatcaa tcgtaaaaga ttctccggga cgggctaatt caggtgtttt
     6661 tagtccaatt tttatatcgt gtttatcatg gttcacattg aatggagcaa cactataact
     6721 taatgggcta atgaagagct caggagactc ccaatcacga ataaaagcca cattcacata
     6781 tccattaccc tggaaatcag caggtatgcg gatggtttgt acagagtttt gggcttctgt
     6841 cttaaaccaa tgcacagcat agactttatc tctttcaata gtgatcaagc ctgagccagt
     6901 ataaggagca gtgatttgga tttctatatc ttcattagct tgatattcct ctttattaag
     6961 tttgatagat aattctgcat ttttagcgag aggagcctgg ctagtaccaa ctacgctaaa
     7021 ttgcagttgg ctaagaatac tatcatcctt atctaatacg ttgagggagt aatcaccaat
     7081 agtattcgtt ggcaggctgt agttaatgcc agattcttta atttcgaatg gattggtatt
     7141 gatgactgta gattgtattg tggattgata ttgataagtg ccatcggctt ttttaaccag
     7201 agttgtgacg gggcgcaggg aaattaattg tatctttaaa ttttttacgt cttctttacc
     7261 caactgtgga ttaattgcaa tataattaac atttctgaca ctgttctgtt taataaaatg
     7321 caaatcgcca tcagctttat agccaatgaa atagggtaaa gggctgacca atgttttagt
     7381 ttgtgcagta acacttcgcc cactaccagg ctcaaagcct tcagcaaaaa aagttaattg
     7441 ataagttgcc ttttcaaaac gttcaagatt caggctaaat tcagcctgcc cattctcgtt
     7501 agttgttgct tctgccagat tttctgtaaa aacttttggg ggttttttcg gatcatacag
     7561 tggatccgca aaaatataat caggatagtt gtcaaattgc actcgctgag gagttaataa
     7621 aattttgccg cttactcttc tattggcagc tggggcacca tacaagttcc aaagatctac
     7681 ctttgctttc aggtcagtgg gtgagctcca gccatcaaaa ggtttgggtt caaagctgga
     7741 agtaatacgc attctgtcgg gttggaattc ggaaatacga acactggttg aaccgagaag
     7801 attttgcggg tggttatctt ttaccaagta taaataaacc atatactgac cagtgggaga
     7861 attggcactg gtagtaaaat caagctctat ataaccggtg tcatttaatg ttactttttg
     7921 gtctttgata gtagttcccc tggcatctac tacagtggct tgtaatggca gaccagaagg
     7981 ttgtggttct gcaaaggctc gttttacaat cattccaaca tgcactgtgt ctccgggcct
     8041 atatattcct ctatcagaaa ataaataagc tgttaagttc tgcaaatcct gatcattggt
     8101 atagattcct ccaatatcaa attttgaaaa attcaattgc ctgttgtagt tattgaatgg
     8161 aataaaagac acatcattat tcaggtttgc caaatacaca gttggttctc tgtcttcaat
     8221 aaaatctttc agagtaggaa aatttgctcg cccttgttca tctgtaacac gagataaaat
     8281 gggcaagcca tttttaccta aaatcgtaac tgttgcccct gcaactggga gtccttgtgt
     8341 aatggagcta ataaagacat catggctccc atcattattg tcttttacca ccatccccag
     8401 atccgtaatc aatatcaaac gactggcctt aacatcgaga gcatactgat tggctacatc
     8461 ccaacctgtt gcttgtaata agaacaatcc ttgcggtcct gaggcattgg cttcagatgc
     8521 taaatatttt cccagatcca gggatgtgta ttgctgtctg gttaaatcag tggagtcata
     8581 ctgctggatt tccgagaaaa tttgactgat gttttgttga ttaaaagagg gattaataaa
     8641 ataaggattg ctgaaatcgc cttgggtttg cgtaaccagc tgattgacat tatcaggcaa
     8701 cacacgcgcg aattcatact taactgcagg cactccgcgt atcagaactg acagtttttt
     8761 ctcaccactc agtgctaaca aagagccctt atgcaagaaa ctgatttctt tggggtattc
     8821 tggtactgga acgatagccg tgtaatcatt gcttaattta aaaccaccaa aacccttcat
     8881 tcctttatca atcttgatat acaggtatct gggagtttga gctttaaatt tgaagccatg
     8941 caacgtagta taattttgtt ccgaagggat cacctctttg ggtaatggag tcgacagaga
     9001 caaaatgtta ttcgttactt cacctggatt ttgccattcg taattggatt tttctggttc
     9061 tgcagcggta gcaggataat tctgcgggag caaatagaca tgtactgatt tattaaattc
     9121 actttcatta acacccaaac tggtctcaat actaagtacc tgttcgggcc tgtctttatc
     9181 attacggact atattagccg atgttgaaac tatttttaga aagttacttg catcgggtat
     9241 tagcaaattt ttactaattg actgcccaag aattgctgaa tcagttgaag aactaacgtt
     9301 tttattcaaa gttaaaagta aataacgcga tacatcttct attttgatat ttgccgaatg
     9361 aagataggca attcgtttat tattatcata agtataagaa aaaggaacgg attctgcagt
     9421 gaggtctgct tttccatttt taatggtttg gaatacaacg gaagtatttt tttcaagatt
     9481 ttttggattt actggatagt tgaactctat agtggctaca gcctgccttg tttctgcatt
     9541 gacgggatct tggtaaaatt tgaactcgcg gattgtggcc tgaaagggct ttgtcgtaaa
     9601 ggataaatca taactttcaa tattcgcatt gggtgcaaaa aaattttttg caaaatgaat
     9661 agtatatttt tgccctgcag gccaatcttc agcgggaata aaaattaatt ggctatcact
     9721 attccagctc catttgcccg caatttgcgg tgccatttct atcccttcat caatttcttt
     9781 gccaattaaa ttaatgggag caactgattg tgggataaat tcattatttc taatgccgaa
     9841 atcaataatg agattattgg gaacaaggtt ttcctcatta ggtgtgatgt ccggtattgt
     9901 gatggatgca gtagtataag ttggttttgg caaattatta taccaataag caccatatgc
     9961 tcctgcaccc aataacacga taaataatag agttgttccc caaaatattt ggggagagtt
    10021 ttttgatttg tgttttaaat aaactaacca ggtcgggcga ttccatttta ttttaccgaa
    10081 tagagttgaa aatattgaac acaatacatt cataattagg gagaatgggt ttttgttcat
    10141 ggtgatatgg agtcctggtt ggtctaagtt tattttagga tctggtaatg agggtgcggt
    10201 aaagcataca ccccccgcaa taaattatta attattagtc tatcctttgc caattctaat
    10261 gcatttcaat attaatttga atataattta acctttatat catccctgtt gtgggcaatg
    10321 agaaaagtaa taaaatatct tagcataatc ctgggttcgc tatttgtcag tgggttttta
    10381 ttattatttt tttctcccaa gccttcttta ttagaagaat tcaatttttc taaagcggta
    10441 tatgatgata atcaacaatt attaagatta attttaagtg acgatgacaa atacagactt
    10501 tatgtaccgt tatctcaaat acccaaggag ttaatggagg ccacactttt acaagaagat
    10561 cagtattttc tctggcataa aggagtgaac cctttttcca tggtgaaagc catctggcaa
    10621 acttatgtgg ttaaatcgcg cagaatcggg gcttcaacaa tcacaatgca ggtggcacga
    10681 attcgttttg gaattaactc caagaaaatt tctggaaaat tatggcaagt tattagggcg
    10741 ttacaaatag agcgtcatta tgataaagat aaaattcttg aggcttattt caatttggcg
    10801 ccttatggtg gaaatataga gggagtaggg gcggcgagct taatttattt taataagcct
    10861 gttagtaaac ttggtttacc agaggcacta actttaagca ttatccctca aaatccagta
    10921 aaaaggacat caaaaaacag tgaattaaaa aaaataagaa atcgcttatt tgccagatgg
    10981 ctgaagcagc atccgcaaga ccaggagaag cagcctctgt ttggactgcc tttagttatg
    11041 caaaccaatc aaaacctacc cttcctggct cctcattttg taaatatggt actgaaggaa
    11101 aatcctggtt tatcacaaag tatttcaaca actttggatt acaggcttca gttaatagtt
    11161 gagcgaatta caaggcatta tttagcaaga aaaaaaatgt ttggtgttca caacgcggcg
    11221 gttttacttg tggatagccg tactatgagt attaaagcgt tgatgggatc tgctgatttt
    11281 tttaataaca agataagtgg acaaatcaat ggtgtagaaa ccaaaaggtc gcctggctca
    11341 actctgaaac catttattta tggattagca ctcgatcaag gtttaattca ccccaataca
    11401 gttttaaagg atgtaccaca gagttttaat ggttataatc cggaaaactt cgattatgat
    11461 tttatggggc ccatcaaagc aaaagatgct ttggtactta gtcgtaatat cccggccatc
    11521 gagctttcca atcaattaac taatccaaca ttacataaat tacttgaaca ggcgcatata
    11581 actcagttgc gttctgaatc atattatggc ttgtctctta atttgggtgg tgttgaactc
    11641 actatgaaag agttagtcgg tttatatgct atgctgatta atgatggggt ctggtatcca
    11701 atcaattcat taaaaggggt tccgcgacaa aaaggtcgac acttgcttag cgcagaagca
    11761 agctttttag ttttcgatat gctaaaaaat actccaatga aagagtcgaa taatgatggc
    11821 agtttacaat taccaattgc ctggaaaaca ggaacttcat caggatacag agatgcctgg
    11881 acagttggag tttttggtcc ttatgtattg gcagtttgga taggaaattt tgataatcag
    11941 gcaaatccgg cttttatagg taaagaaatt gctgcgcctt tattttttga attgattaat
    12001 gcaataaaac atgaaagagg accaatagct cgagttgaaa aataccctga acacatgcat
    12061 ttggaaaaaa tagaagtatg caaagcctca ggtatgcttc ctggtcgata ttgtacggat
    12121 acagaatgga cctggtttat tccaggtaaa tcccctatta aaacggatac aatttttcga
    12181 gaggtagcaa ttaacgggaa gacggggctt cgtacttgtc acatcgatga aaatactcgt
    12241 tttgaagtgt atgagttttg gccctccgat ttattaagaa tattcaggag ggcagggatt
    12301 caacgccata ccccgccatt ttttgaacca ggttgcgctt tgtcgggaaa tagtggtatt
    12361 agcccccaaa ttacatctcc ccaggcaggg gtaagttata ttgtccatgc taatacccaa
    12421 tcaaacaaga taatcccatt aactgcggta acagatgctg gaattgcaca tttatactgg
    12481 tttatcaatg aaagttttgt agctgaaaca aaatcggatg aaccttatct ctggcaggcg
    12541 aaacctggta aatatgtggt aagggtggta gatgaccgtg gtttatctga tgcgcgggat
    12601 attactattc agatggttag ttgacgcata tttgataata tataagtgag cccttgtcct
    12661 aatcggagca agggatttaa aattaaactg aggccgagtt tcttgactct tcatcttcgt
    12721 tctcttcttc agattccgct ttgtcttctg atacaacttt aggctcagca tagggatcct
    12781 tggaaaattc actaggggcc cagcccacta gcaaggttcc tctgtatagt aattgtaata
    12841 gaaatattgc cttgcataga tcagcatccg tatattcctc acactctgtt ccagtaaaaa
    12901 gcaaagcaat accaagaccc atttgtgttg ccgctatact accttgcaaa agatggatca
    12961 gtttttcaga aacatgagta tcaaatctga atagggaata aattgagatt aaagtttgag
    13021 cgagttttgt tggaattgat gcggcaggat caaatgtttc aagcgttgtg cccaatactt
    13081 cggatccggc attagcgcgt tgagcgttac gatgtcccgg tgtcgaggca tacggagctc
    13141 gcatagaaat ggcagacaaa cattttcgaa aagactcaaa cataatcata tccttataac
    13201 aatttaatac gtgatatctt taataaaagc ggacattaac agacaagtta ttttgattcc
    13261 agtatttctt gatgaattta gcatcaatct acatcaaaaa atgttcattt gatttgacat
    13321 ttcaacatgg ctttcagatt ttaaaattaa tttttagcca aattaggatt tctaaaacgc
    13381 ctgataattt tggggtgttc gataaagatg agcttactga cataaatagt tgctagaaat
    13441 tgaatacatc ccatgatgat aaacaaaaca tcaaatgatg ttttggcaat aattagacca
    13501 ccacataaca aggcgatccc agtgtaaata cttgataacc cattggccaa accccaagtg
    13561 agtccttcat gcgttttatc ttcatagcgg gcatacagag cataccaggt tgtagtagag
    13621 agcccacctg atattccaag gccaatttgc aataaagcca gttgcttttt acttgttata
    13681 aagatgtaac aaaaggtaaa tatggtttgg agtgcatacc ccgcaaccag caatttttct
    13741 ttatgaataa aatctgaaat ataacccaag ccaattacca caattccaac tgaaattaaa
    13801 tacaaagacc atacccatga tatgtctaag ggagacgagt tgaacctttc gcaaaaaata
    13861 ccgaagagcg ggcctaacat tccttctgac aagtaccaca aattattggc aaataataat
    13921 gtacgttctt ttttactaaa ca
//
LOCUS       DACVWI010000078        13805 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.078, whole genome shotgun sequence.
ACCESSION   DACVWI010000078 DACVWI010000000
VERSION     DACVWI010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13805
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.078"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            76..1218
                     /locus_tag="JBH85_08225"
     CDS             76..1218
                     /locus_tag="JBH85_08225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAU0946187.1"
                     /translation="MDKMTSSKHYKESMTMLFEGSLRAIPFNIILATLLALDLVYNDV
                     PALIIGAWFFGIVFISLVRSYFCWRIIKRGVEKNRIQATLIEFFLLTFVTGSIWGACY
                     FITLPYLNALHEFIIILVFGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDV
                     DRTMLATMFLIFIAMLIISAKINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYN
                     RRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLINDNLGHPFGDKVLISIADLLKKI
                     FRRSNDILFRLGGDEFAIIIANQPIKETISICEAIKNPFKTENLNHTYDSNEQLFMSH
                     VTLSIGIAYIHFESSVSIEHAITATDKALYQAKKKGKNQIVVKKLL"
     gene            complement(1280..1921)
                     /locus_tag="JBH85_08230"
     CDS             complement(1280..1921)
                     /locus_tag="JBH85_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946188.1"
                     /translation="MKMKLQLIAIGILLSINVFADGYYPEPTSQDQPWTIIASFGSGR
                     YQHMYSKDGKTALGRLALANELMLSGDIALGLELGVQNGNKMRLNIPRETLSVLGWLP
                     VETNLSPMLDLLVTAKSDPLFGSSFFAQLKGGVAYRSWQVDLYPINEISQLAGEIQAG
                     FGYPITALASLSLLYQGVFGNDPNVKLNMSSKTGSVSNIPVLHGILLGFTVNL"
     gene            complement(2094..2181)
                     /locus_tag="JBH85_08235"
     tRNA            complement(2094..2181)
                     /locus_tag="JBH85_08235"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2145..2147),aa:Ser,seq:gga)
     gene            2405..2839
                     /locus_tag="JBH85_08240"
     CDS             2405..2839
                     /locus_tag="JBH85_08240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946189.1"
                     /translation="MTLQHSIQKGVSDFSFIIGTGLKYGGAGGLLVMAVVGTVAIDLV
                     LLAAAEKHHNSFLTGFVLGSMFSRGNLDPVPLLIASPITSAVAVVLSVALGVPGVGLA
                     ILAGWTLAGTLLAVGMGLEAFAKSINPEPSSESDYNSCLCFN"
     gene            2961..3407
                     /locus_tag="JBH85_08245"
     CDS             2961..3407
                     /locus_tag="JBH85_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946190.1"
                     /translation="MYLRLLALSALCFVTSPIWSFTCIYTLVKDNCWTDYDVTVDVIE
                     DSTSKTLLTVTAPKGKSWARGTFNCEAAEGLRYVAQFSPVFWQNDVGKTYPALRNWYL
                     PAKVNPGDLAWTIPVCFPADFAQVPFPPNVAGNCKCNFKNIPDPKL"
     gene            3494..4570
                     /locus_tag="JBH85_08250"
     CDS             3494..4570
                     /locus_tag="JBH85_08250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HAU0946191.1"
                     /translation="MITIRNKIGQMLIMGFHGSELHDNSPVAQWLSNDGLGGVLLFDK
                     DLSTGIYGKNLRNQAQIRQLIRQLNRYASMISGGNDNLPLFTAIDYEGGVVDRLSKIE
                     GCPPTMKARELAKLSSDDFDEEVTQMAMTLQSLGFNLNFAPVVDLNLNAHAGIIGNLG
                     RSFSSNPEVTIRLAKQFVDVFSRYGIACAYKHFPGHGSATGDTHEGFVDVTETFQTDE
                     LIPYRSLLKDLSNPVMVMTAHVINKHLDSKGLPATLSYDVLTLLLRQSIGYDGVIISD
                     DLQMHAISNHYSLEEALCLTINAGADMVIFANQLGTITAPEVIDVIEKLVIDKQIPSQ
                     RIDEAYRRIVRLKQQIICSELINT"
     gene            4957..6237
                     /locus_tag="JBH85_08255"
     CDS             4957..6237
                     /locus_tag="JBH85_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HAU0946192.1"
                     /translation="MCAAHHQKNKYIFSTPLIYAAMIGLGIISGLSDLPFLKETGLLI
                     SDLFIKLFKCISLPIISLSIIVTLANYQTDSLMKSVWQRTIKYTFATTLVAALISCFL
                     YILIHPSTVQVNLDAANPKSTSSLGYLGYLSNMIPTNLLSPFLEQQVMGVLLLSIVIG
                     FAVRQIPETEPRETIIRFFRGAHGMFLVMTKWIIKLIPLGLFGFITSTVIQLRSGMDI
                     KGIGQYLMIIVLANLIQGLVILPLWLKSNGIKPLSSMRAMLPALSVAFFSKSSVGTLP
                     VTMNTVEANLKVNPQISRFVLPLCTSINMNGCAAFIFATVIYLMQSHGIQVSYATMGI
                     WVLVSTIAAIGNAGVPMGCFFLSVSLLSSMNVPITLMGVILPFYGLIDMLETALNVWS
                     DACVTKVVNDKAEGGDGVVGIRPKERSLLNAELG"
     gene            complement(6537..7670)
                     /gene="dapE"
                     /locus_tag="JBH85_08260"
     CDS             complement(6537..7670)
                     /gene="dapE"
                     /locus_tag="JBH85_08260"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HAU0946193.1"
                     /translation="MTDIKQILTDLIRFPSITPEDAGCQKYMIQFLEQLGFTCQQLNN
                     GPVSNFFACYGKIGPLLVFAGHTDVVPVGEVSKWDTDPFSLEEKNGVLYGRGVADMKG
                     SLACMLHMARRFIKTYPSFPGRLGFLITSGEEGDEFNLGTPYVMQKLEQQGIVIDYCI
                     VGEPSSSLKAGDIIKIGRRGSLSAKIHLSGKQGHVAYPHLADNPIHRISPVLAELTSM
                     QWDNGNAYFPPTSMQITYIHCGGHAGNIIPGELNLHLNFRYSTEQTDESLKTRVINAF
                     THHNLNPAIEWRLNGEPFLTNKGILLESCKQTVLEHIGTLPELSTSGGTSDGRFIAPY
                     GVEVIELGLVNATIHQVNECTSLQDLNTLETMYFSICEKLLID"
     gene            complement(7663..8493)
                     /gene="dapD"
                     /locus_tag="JBH85_08265"
     CDS             complement(7663..8493)
                     /gene="dapD"
                     /locus_tag="JBH85_08265"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HAU0946194.1"
                     /translation="MNSLQALIEQAFENRQNLSLDTASSDLINAINEVLSGLDNGQFR
                     VAEKINGEWTVHQWLKKAVLLSFKLFPNQIIDAGFCQFYDKIPLKYTDCSNEQFQQSG
                     VRVVPHAMVRRGAYIAKNTVLMPSYVNIGAYIDEGVMVDTWATVGSCAQIGKNVHISG
                     GAGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEKNSVISMGVFLGQSTKIYNRI
                     TGEVSYGRIPAGSVVVAGNLPSHDGSHSLYCAVIVKQVDEKTRAKVSINDLLRANQDD
                     "
     gene            complement(8497..9390)
                     /locus_tag="JBH85_08270"
     CDS             complement(8497..9390)
                     /locus_tag="JBH85_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAU0946195.1"
                     /translation="MQKNKQNGGQLHAIMAIFALIVSTTLCFIPILFVGLLKLFPNKN
                     WQSLCTRCVDKIATFWCGINNFYVAKAQKIHWEISGLNNLTPKDWYLVVANHQSWLDI
                     VILQRLFNRKIPVLKFFIKDQLKWIPLLGFSWWAMGCPFMKRYSKEYLAKNPHKQGKD
                     IISTRKAIETFKRTPASIMNFVEGTRFTKVKKEQQQSPYNYLLKPKAGGISFIINSMG
                     QQIKSLIDVTIVYAEKNHSLWDFLCKRVKKVKIIIRQLPIPAQFTSANLINDFQAQNA
                     FKEWLNEQWAIKDNLIASLQE"
     gene            complement(9457..10608)
                     /locus_tag="JBH85_08275"
     CDS             complement(9457..10608)
                     /locus_tag="JBH85_08275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HAU0946196.1"
                     /translation="MNKTHFDTRAIHAGQEPCQSTGAVMTPIYATSTYKQIAPGEHLG
                     YEYSRTQNPTRKAYEDCIASLESGQKGFAFASGMAAINTVIDLLDSGDHVVAMDDLYG
                     GTFRLFDKVKTRTSNLSFSFIDMSVPENIEAAITPKTKLLWLETPSNPMLKLANLRKI
                     AAIAKKHNLITVADNTFATPWIQRPLELGFDIVLHSATKYLNGHSDVVSGVVVVGDNS
                     VLSDKIAFLQNSCGAVAGPFDSFLVLRSLKTLSVRMQRHCENANHLANWLSSHPKIEK
                     VIYPGLKSHPQYSLAKEQMNDFGGMISLVLKGSLEDAKRFLARCELFTLAESLGGVES
                     LIEHPAIMTHASIPVEQRKALGIEDGFIRLSVGIEHIDDLRADLEHALG"
     gene            10757..13072
                     /locus_tag="JBH85_08280"
     CDS             10757..13072
                     /locus_tag="JBH85_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0946197.1"
                     /translation="MRRQEINYEKVAKAAEKIKKRAIEPSVNEIRDELGLVGNHPQLS
                     ILLEEWYHNQPEFKRKSHTPLTENINLNTDEIREKNVELEKSISLLRATLESTADGIM
                     MVNGHGAVVDWNQKFVEMWRIPSYMMESGKESISFEYILEQLIDPQSLIADVQCLYQN
                     PEWQGELPELHFKDGRIYERFTQPQRVGSQIVGRVYSFRDVTQKRMALDELRIRERAI
                     EASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHALGKGLLTLLGSNLEEVNHKRI
                     ELAIRESKEETIEMESIKRNGEFYWCEISVAPVKDSFGYVKHYICILNDVTQRRDMED
                     QLLLQATYDSLTNLPNRVLLMDRVEQAILQARKNKAILAFLFLDLDRFKLTNDTLGHS
                     MGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTDIDNMLEAETIAQNILKIIEKP
                     IQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYHAKDTGRNNYRVYEPEMNRR
                     VINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEALMRWHSKILGLVSPADFI
                     PMAEENGMILEMGEWAMKQACIQVKEWHKAGFKNLSIAVNLSGRQFRQKNLPEVVSRV
                     LKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVIDDFGTGYSSLSYLKQ
                     FPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNLQVLAEGVENEFQRDFITSHG
                     CDYAQGYFFKAPDTPENILEFLKSLSESKIK"
     gene            13376..>13805
                     /locus_tag="JBH85_08285"
     CDS             13376..>13805
                     /locus_tag="JBH85_08285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HAU0946198.1"
                     /translation="MKHITIIGAGLAGTLCGLYLARRGYEVELFESRPDIRNSPTDYG
                     RSINLALSCRGITALKAMNLLSEVNKIMVPMRARAIHEANGEVHYQPFGRHIDEYINA
                     ISRSDLNALLLNKAELCPNIKLHFNMKLHSLDIHNKKIKFE"
BASE COUNT         4165 a         2432 c         2778 g         4430 t
ORIGIN      
        1 atagttttat gcaaaagtgt tttataatta gcctgtgtcc tataattaaa aggagtggat
       61 attaattaat ggacattgga taagatgact tcctcgaagc attacaagga aagtatgacc
      121 atgctatttg agggatctct aagagcgatt ccgttcaata ttatattggc tacattgctt
      181 gcccttgacc ttgtttataa tgatgtgcct gcgttaataa taggggcatg gtttttcggt
      241 attgtcttca taagcttggt aagaagttat ttctgctgga gaataattaa gcggggagta
      301 gaaaaaaata gaattcaagc cactttgatt gagtttttcc ttcttacatt tgttacgggc
      361 agcatatggg gcgcctgtta cttcattaca ctgccttatt taaatgctct gcatgaattt
      421 attattattt tggtgtttgg tggaatgtgc gcaggcgcga tcgcttctct gtctatttat
      481 ttaccagctt attatgctta tgtttttcca atgcttttac cagttattgt ttacaattat
      541 gccttgttag atgtcgatag aacgatgtta gcaaccatgt ttctaatatt tattgccatg
      601 cttattattt ctgcgaagat taatcataga ttgctcaatg aaaattttcg attattcaat
      661 gaaaaagaac tattaatcaa tgaattgaaa gtaatgtcaa tcactgattc tttgtcgggg
      721 ttatataaca ggagatattt tgacaacata tttccacaag agtttaatcg agcaagacgc
      781 aatcaatatt ttttaagcct ggtatcaata gacatagata attttaaatt aatcaatgat
      841 aatttagggc atccttttgg cgataaagtc ctgattagca tcgctgattt attaaaaaaa
      901 atatttcgac gttcaaacga tatactgttt cggcttggcg gagacgaatt tgcaataatc
      961 atcgctaatc agccgattaa agaaacaata tctatttgtg aagcaattaa aaatcctttt
     1021 aaaacagaaa acttgaacca tacttatgac tcaaacgagc aattattcat gagtcatgtc
     1081 actttaagca tagggattgc ttatattcat tttgaaagtt cagtcagcat agagcatgca
     1141 attactgcga cagataaggc attatatcaa gctaaaaaaa aaggaaaaaa ccaaattgta
     1201 gtaaaaaaac tactttaaga agatggcatt ctatctttaa ctgagatggc gcctggaagc
     1261 tgcgtcgtac tttaatggat tataaattga cagtaaatcc taataaaatt ccatgtaaaa
     1321 cagggatatt tgaaacactg ccagtttttg agctcatgtt taatttgacg ttagggtcgt
     1381 taccaaaaac cccctgatac agcaaactca aactggccaa agcggtgata ggataaccaa
     1441 agccagcttg aatttctccg gctaattgtg aaatttcatt gatagggtag aggtcaactt
     1501 gccaagacct gtaagcgaca ccacctttta attgtgcaaa aaaagaactt ccaaataagg
     1561 ggtcgctttt ggcggtaact aataagtcca gcattggact gaggttggtt tctaccggta
     1621 gccatccaag gactgataag gtttctcgcg gaatattcaa tcgcatttta ttgccatttt
     1681 ggaccccaag ctctaatccc agagcaatat ctccactcag cattaattca ttagccagag
     1741 ccaatcggcc taaagcggtt ttgccatctt ttgagtacat gtgctggtat ctgccacttc
     1801 caaaactggc aataattgtc catggttggt cttgagaggt gggctcagga tagtaaccat
     1861 cagcaaatac gttgattgat aataaaattc ctattgcaat tagttgtaat ttcattttca
     1921 tctttcatat ccctgattga attggttggt tctgaaagca gttttaccaa aagaatctta
     1981 tatgagccag ctgtagtctt tacacaatgg atataattta ctgctttatg caactcaatg
     2041 aaagcggcaa ttatagcctt ataccctgtg aaggataacc aggaattgta atttggcgga
     2101 gagagaggga ttcgaaccct cgatacgttg ccgtatacac actttccagg cgtgcgcctt
     2161 cgaccgctcg gccatctctc caaccgggca agcttatact tgtcggcaaa taaaagcaag
     2221 actgtgataa ctattaaaag aggttttcca tcacaaagat aatatatttt atttttgtat
     2281 gggaataaat tgtatcgctt tatttgagtt ttaatccaat gtactcgtta cttcagtgtt
     2341 caattagtgt tgattatgtg caaaatcaag tgtattattt ttcaattttt taggagtaag
     2401 gttaatgaca ctgcaacatt ccatacaaaa aggggtatct gattttagtt ttattattgg
     2461 cacaggtcta aagtatggtg gtgctggcgg tcttttagtg atggctgttg taggaacggt
     2521 tgctattgat cttgtcttgc ttgctgctgc agaaaaacat cataacagtt ttttgacagg
     2581 atttgtgtta ggctcaatgt tttccagagg taacttggat ccggttccac ttttgatcgc
     2641 gtcccccatc acatcagctg ttgctgtcgt gttatctgtt gccttgggcg ttcccggggt
     2701 cggtcttgcg atactggctg gatggacttt ggctggcact ttattggctg ttggtatggg
     2761 cttggaagcg tttgccaaat ccattaatcc tgaaccttca tctgagtcag attacaattc
     2821 ttgtttgtgc tttaactaat agagccaaga ggggagagca ggttatttcc cctcttaaaa
     2881 cagtttatca gaaaattatt tttataaata ttgtatatac tatatagtaa taatggttca
     2941 ttaaatctta ggattgaatc atgtacttac gtttgctcgc cctatctgca ttgtgctttg
     3001 tgactagccc aatttggtct ttcacatgta tatatacctt ggttaaagac aattgttgga
     3061 ctgattatga tgttactgtc gatgtcattg aagattctac gtcaaaaact ttgttgacag
     3121 ttaccgctcc caaaggaaaa tcatgggcta gaggtacttt caattgtgag gctgctgaag
     3181 ggttgagata tgtcgctcaa ttttcgcctg tcttttggca aaatgatgtc ggaaaaacat
     3241 acccggcatt aaggaattgg tatttaccag caaaagtgaa tccaggagat ttggcctgga
     3301 ctatccccgt ttgttttccg gcagattttg ctcaagttcc ctttccaccc aatgtagcag
     3361 gaaactgtaa atgcaacttc aagaacattc ctgatcccaa gctttaattt taaaagctaa
     3421 tgcgtagcgg ggcatagcca gagagaatat ctttgtgtat gattttatgc ttattttgtg
     3481 atggagcgag tgattgatta caataagaaa caaaatcgga caaatgctga ttatgggatt
     3541 tcatggttcc gagctgcatg ataatagtcc ggttgctcaa tggttatcta atgatggtct
     3601 cggcggagtg ttgttattcg acaaagatct atccacaggg atttatggca agaatttaag
     3661 gaatcaggct cagataaggc aattgattcg acagcttaat cgttatgcat caatgatttc
     3721 aggaggtaat gacaatctgc ctttatttac tgcgattgat tacgaaggtg gagtggttga
     3781 cagactaagc aaaatagaag gctgtccgcc tactatgaaa gccagggaac ttgcaaagtt
     3841 atccagtgat gattttgatg aagaagtaac tcaaatggct atgacgttgc agtcattagg
     3901 ttttaattta aattttgccc cggttgttga tttaaattta aatgctcatg cagggattat
     3961 tggaaacctg ggaagaagct tttcttctaa cccagaggtg actattcgtt tggccaagca
     4021 gttcgttgat gttttcagtc gttatggtat tgcttgtgcg tataaacatt tccccggcca
     4081 tggcagcgcc actggagata cacatgaggg atttgtcgat gttacagaaa cctttcaaac
     4141 cgatgagcta attccttatc gaagtttatt aaaagacctg tctaaccctg tcatggtaat
     4201 gacggcacat gtgatcaata agcatttgga tagtaaggga ttgccagcaa ctctgtccta
     4261 cgacgtttta acattattgt tacgtcaaag cataggatat gacggggtca ttatcagcga
     4321 tgatttgcaa atgcatgcca tttcaaatca ctattcatta gaagaggctc tttgtcttac
     4381 catcaatgcc ggggctgata tggtcatatt tgccaatcag cttggaacta ttaccgcacc
     4441 ggaagttata gatgtgattg aaaaactggt aattgacaag caaattccct ctcaacgtat
     4501 tgatgaggcg tacagaagaa tagtacgtct gaagcaacaa attatatgca gtgaattgat
     4561 caatacgtaa tgcccatgcc atgtggtaac tggcggattt atgaaccatc aagttaccac
     4621 tataacttca cctattagag aggctccatc ttcttttcag catgaacaga cataattgtt
     4681 tgagattggg tttgaagtat tttatttgta tctatatggt gtgttctgtg aagaatataa
     4741 ttgactcagt ttatttatcc tattgactag aagaaaaatc gtgttacaat atgtactcta
     4801 aatgaacagt tttagctatg ggtgatgact tttatgtcaa ttcaatcatt atattattat
     4861 aattcctcaa tatttcactc catatatcaa gccatctgtt gttgctgcta atcatacttt
     4921 gcttaaataa ttaactaaag ttttaaggat tcagctatgt gtgcagcaca ccaccaaaag
     4981 aataaatata tttttagtac cccactaatt tatgcagcga tgattggact tgggataata
     5041 agtggattat ccgatttgcc ttttttaaaa gaaacagggc ttttaatttc tgatttgttt
     5101 attaaattgt tcaagtgcat tagtttacct attatttcct tgtcgattat tgtaactctg
     5161 gcaaactatc aaacggatag tttgatgaaa agtgtatggc aaagaacaat taaatatact
     5221 tttgctacaa ctttagttgc agcattaatc agctgttttc tatatatttt gattcatcca
     5281 agcactgttc aagtcaactt ggatgcggcg aacccaaaat ccaccagcag tttgggatat
     5341 cttggctatt tgagtaacat gataccgact aatttattat ctccattcct ggagcaacag
     5401 gttatggggg tattgttgct tagtattgtt atcggttttg ctgttcgtca aataccggag
     5461 acagagccac gtgaaactat tattcgattt ttccgcggcg ctcatgggat gtttttagtg
     5521 atgaccaaat ggataattaa attaatacct ttggggttat tcgggttcat tacttctact
     5581 gtaattcagt tgcgatcggg tatggatatt aaagggatag gtcaatactt gatgattatt
     5641 gttttagcta atttgataca aggattagtc attctgcctt tatggctgaa atcaaatggt
     5701 attaaaccat tatcttcgat gcgcgcaatg ttacctgcgt tatctgttgc ttttttttcc
     5761 aagtcatctg tcggtacttt gcctgttaca atgaatactg tagaggctaa tttaaaggtt
     5821 aaccctcaaa tcagtcgttt tgttttacca ttatgcacaa gcattaatat gaatggatgt
     5881 gccgcattta tttttgccac agtcatttat cttatgcaaa gtcacggcat ccaggtttct
     5941 tatgctacta tggggatatg ggttttagta tcaactatag cggcaatagg taatgccggc
     6001 gttcctatgg gctgcttttt cttaagcgtt agtttactct ccagtatgaa tgtgcctatc
     6061 acgcttatgg gagttattct tcccttctat ggtttgattg atatgttgga aactgcctta
     6121 aacgtatggt ctgatgcttg tgttaccaag gttgttaatg ataaagcaga aggtggtgat
     6181 ggagtggtgg gcattagacc aaaagagcgt tcattattaa atgccgagtt aggttaaagc
     6241 cagcaaatct tcaagcacaa atgagtatag cttacatata agtctccaga aagttttttg
     6301 gagactcaat gtctatgaaa tcagctcact acctggaacg gccgtatttg gttcatcctg
     6361 aacgaaaata atccttcaaa attctcacat aactatctat gctgtgcttt ttcaggatta
     6421 ttttcatcca aactgaactc aaatccgacc gccagaggat atttaaagat gaggttacta
     6481 acctattact gtaatttgga ttgttggtgc gaaccctcat tacagaattg gcttgattaa
     6541 tcaattaata atttctcaca gattgaaaaa tacatggttt caagtgtatt caaatcctgt
     6601 agagaagtgc attcattaac ctgatgaatg gttgcattta ccagtcccag ctctataacc
     6661 tcaaccccat aaggtgctat aaaacgccca tctgaagttc caccacttgt tgaaagctcg
     6721 gggagagtcc caatatgttc aagcactgtt tgtttgcaac tttctagcaa tatgccttta
     6781 ttcgttaaga atggttcgcc atttaatcgc cattctatag cggggttaag attatggtgt
     6841 gtaaaggcat taattactct cgtttttaac gactcgtctg tttgctctgt cgaatatcta
     6901 aagttcaaat gcagatttaa ttcgcctggg ataatattac ccgcatgccc tccacaatga
     6961 atataagtta tttgcatgga ggtaggagga aaataagcat tgccattatc ccattgcatt
     7021 gaagtgagtt cggctaatac ggggctaatt ctatgaattg gattgtcagc caaatgcgga
     7081 taggcaacat gaccttgctt tccactcaga tgtattttgg cacttaatga tccacgcctt
     7141 ccaattttga tgatatcacc agctttcaag ctgcttgaag gttcacctac tatgcaataa
     7201 tcaataacaa tcccttgctg ctccagtttt tgcatcacat aaggggtgcc caaattaaat
     7261 tcatcgcctt cttcgccact agtgatcaga aatcctagtc tgcctggaaa ggaaggataa
     7321 gttttaataa atcttctggc catgtgcaac atacaggcca ggctgccttt catatcagca
     7381 accccacgac catagagcac gccatttttt tcttcgagcg agaaagggtc tgtatcccat
     7441 tttgatactt caccaacagg aactacatcg gtatggcctg cgaacaccaa taaaggccca
     7501 attttgccat agcaggcaaa gaaattggat acaggcccat tattcagttg ttgacaagta
     7561 aatcccaatt gctccagaaa ttgaatcatg tatttttggc agccagcatc ttctggtgta
     7621 atagaaggaa aacgaatgag gtcagtcaga atttgcttaa tatcagtcat cttgattggc
     7681 tcttagtaaa tcattaatgc ttaccttcgc gcgagttttt tcatccactt gtttcacaat
     7741 gacagcacaa tataaactgt ggcttccatc atgacttggc aagttacctg caacaactac
     7801 tgagccagcc ggaattctgc cgtagcttac ttcgccagtg attcgattgt agattttagt
     7861 gctttggcct aaaaatactc ccattgatat gacggagttt ttttctacga taaccccttc
     7921 cactatttca gagcgggcac caataaagca attgtcctca atgatggttg ggttcgcttg
     7981 taatggttct aaaacacctc ctatacctgc gccgccagat atatgtacat tttttcctat
     8041 ttgggcacaa gaaccaacag ttgcccaggt atcaaccatt accccttcat caatataagc
     8101 acctatattg acataagaag gcattaaaac tgtatttttg gcaatatatg ctccacgtcg
     8161 caccatggca tgaggaacaa ctcttacccc tgattgttga aattgctcat tactacaatc
     8221 cgtatatttt agcggtattt tatcgtaaaa ctggcaaaac cccgcatcta tgatttgatt
     8281 tgggaaaagt ttaaaggata aaagaactgc ctttttaagc cattgatgaa ctgtccattc
     8341 accatttatt ttttcagcga ctctgaattg gccattatcc agaccactga gaacttcatt
     8401 aatggcattg atcaaatctg aggaggctgt gtcgagcgat aaattttgac ggttttcaaa
     8461 ggcttgttca attagagctt gaagtgagtt catgttttat tcctgtaaag aggctattaa
     8521 attatctttt attgcccatt gttcatttaa ccattctttg aatgcatttt gtgcctgaaa
     8581 atcgttaata agatttgccg atgtaaattg tgcagggata gggagttgac gaataatgat
     8641 tttaactttc ttgactcgtt tacaaagaaa atcccagaga gaatggtttt tttccgcata
     8701 aacgatagtg acgtcaatca ggctttttat ctgttgtccc atcgagttaa tgataaaact
     8761 aataccgcct gctttgggtt tcaataaata attataaggg gattgttgct gttctttttt
     8821 tactttagta aaacgggttc cttctacaaa attcataata gaagccgggg ttcttttaaa
     8881 agtttctatg gctttgcgag ttgaaattat atcttttcct tgtttatgag ggtttttagc
     8941 caaatactcc ttactatacc gcttcataaa ggggcaaccc atagcccacc aggaaaagcc
     9001 aagtagagga atccacttta actgatcttt gataaaaaat tttaaaacgg gtatttttct
     9061 gttaaataaa cgttgaagaa tgacaatatc cagccaactt tgatgattgg caacgactaa
     9121 ataccaatct ttaggagtta aattatttaa cccggagatt tcccaatgta ttttttgtgc
     9181 tttagccaca taaaagttat ttattccaca ccaaaaagta gcaatcttat caacacaacg
     9241 agtgcaaagg gattgccagt ttttattagg aaataatttt aataatccaa caaataatat
     9301 ggggataaaa caaagagtag tggacactat caatgcgaaa atagccataa tcgcatggag
     9361 ttgcccgcca ttttgtttat ttttttgcat gaaatacttc tcctatacac atctgccctg
     9421 gttcttttta acagtcagaa ccaggattta catcttttaa cctaaagcat gctccagatc
     9481 ggcacgcaga tcatcaatgt gttcaatacc aactgataat cttatgaaac catcttctat
     9541 gcccagggct ttgcgttgtt cgactggaat agaggcatgg gtcataattg caggatgctc
     9601 aattaaactt tctacacccc ccaggctttc agccaaagta aataattcgc agcgagctaa
     9661 aaatcgtttg gcatcttcaa gactaccttt aagtaccaaa gatatcatac caccgaaatc
     9721 gttcatttgt tccttggcaa gagaatattg cggatgactt tttaatccgg gataaatgac
     9781 tttttcaatc ttggggtggc tgctaagcca gttagccaga tggttagcgt tttcacagtg
     9841 cctttgcata cgaacggata atgtttttaa gcttctcaga accaggaaac tgtcgaaagg
     9901 gccagctaca gcgccgcatg aattttgcaa aaaagcaatt ttatcagaca acactgaatt
     9961 gtcaccgacc acaacgacac cactgactac atcagaatgt ccgttcagat atttggttgc
    10021 tgaatgaagt acaatgtcaa atccgagttc aagcgggcgc tgaatccagg gagttgcaaa
    10081 ggtgttatcg gcaactgtaa tcaaattatg tttttttgca atagcggcga tttttcgtaa
    10141 attagctagc tttagcatgg gattggaagg ggtttccagc catagtaatt ttgtcttcgg
    10201 agttattgca gcctcaatat tctcgggtac tgacatatca ataaaagaaa aggataaatt
    10261 agaagttcgg gtttttactt tatcaaaaag ccggaaagtt cctccataaa gatcatccat
    10321 ggcaacgacg tgatctcctg aatctaataa atcaataacc gtattgattg cagccatgcc
    10381 cgaagcaaac gcaaatcctt tttggcctga ttcaaggctt gctatgcaat cctcataggc
    10441 ttttctggtg gggttttggg tgcgtgagta ttcatagcca agatgttcgc caggggcaat
    10501 ttgcttatag gtggaggtag cataaatagg ggtcatcacg gcccctgtac tttgacatgg
    10561 ttcttgccca gcatgaattg cacgtgtatc gaaatgagtc ttattcattt tttattccca
    10621 taaaaatatt taaattcaaa gaaataccaa taagcaatca gagtattgat taaaaaatat
    10681 actttcggtg ctttttttgc taaagttcat agtataaatg ccgatatttt tatagagtca
    10741 ttctagagag ggatgcatgc gtaggcaaga aatcaattat gaaaaagttg ccaaggccgc
    10801 agaaaaaata aaaaaaagag ccatagagcc gtctgttaat gaaattcgtg acgaacttgg
    10861 tttagttggg aaccatccgc aattatcaat tttgctggaa gagtggtatc acaatcaacc
    10921 agaatttaaa agaaaaagtc acacaccttt gactgagaat attaatttaa ataccgatga
    10981 aattcgcgaa aaaaatgtag agcttgaaaa atcaatttca ctgctacggg caacactcga
    11041 atccaccgca gatggtatta tgatggttaa tggacatgga gccgttgtcg attggaatca
    11101 aaagtttgta gaaatgtggc gaattccttc ttatatgatg gagtcgggaa aagaaagtat
    11161 cagttttgaa tacatacttg aacaacttat tgatccgcaa tctttgattg ctgatgtgca
    11221 atgtctttat caaaatccag agtggcaagg tgaattacct gagcttcatt tcaaagacgg
    11281 tcggatttat gagcgtttta cacagcctca gcgtgtgggc tcacaaatag tggggcgagt
    11341 atatagtttc cgtgatgtta ctcaaaagag gatggctctc gatgagttga gaatacgtga
    11401 acgtgctatt gaagccagta cacatggtgt ggtgattatt gacgtaacaa aaaatgaaaa
    11461 caaagtcatt tatgtcaatc gagctttcga aagaatcacg ggatatgggg agcaacatgc
    11521 tttagggaaa ggtttgctta ctttgctggg ttcaaatttg gaggaggtaa accataaacg
    11581 tattgaactg gcaattaggg aaagcaaaga agaaacaatt gaaatggaaa gcataaaacg
    11641 aaatggagaa ttctattggt gtgaaatcag cgttgctcct gttaaagatt cttttggcta
    11701 tgtaaaacat tatatttgca ttttaaatga tgtgactcaa cgacgtgata tggaagatca
    11761 actgttgctg caagcaactt atgattccct gactaattta ccgaaccgtg tcttactgat
    11821 ggatagagtg gagcaggcca ttctacaagc aagaaagaac aaggcaattt tggctttttt
    11881 atttttggat ttagatcggt ttaaactgac taatgatact ttgggacaca gtatggggga
    11941 taaattatta caagctattg ccaatcgatt actcattgtt acagaggatt ttgatactgt
    12001 tgccagattg gggggcgatg agtttgtgat attacttaca gacatagata atatgctgga
    12061 agccgaaaca attgcacaaa atattttaaa aattatagaa aaacctattc aaatagatca
    12121 acatagtttg aaaattacag gtagtttggg aatcagcttt tatccccgag atggtgatga
    12181 ttacgaatct ttgatgaaaa gtgctgattt gtctatgtat catgcgaaag atactggaag
    12241 aaacaactat cgtgtctacg aacctgaaat gaataggcga gtcattaatc atatgcaatt
    12301 agacaatgcg ttaagggatg ctttaaaaaa tgatgaatta tttctggttt atcaaccatt
    12361 gattgactta aagcaatcca gagtagtcgg attcgaggct ttaatgagat ggcatagcaa
    12421 aatattggga ctggttagtc cggcggattt tatacccatg gcagaagaaa atggcatgat
    12481 tttggaaatg ggtgaatggg caatgaagca agcttgcata caagtaaaag aatggcataa
    12541 agctggcttt aaaaacttaa gtattgcggt gaatctttct ggacggcagt ttcgacaaaa
    12601 aaacttgccg gaggttgtat cgcgagtatt aaaaagctct ggtttgcaat cgagattttt
    12661 ggaactcgaa ttaactgaaa gcttgttgat agaagatatt gatcacgttg tagatactat
    12721 gtatgcattg aaagacatgg gaaccaagtt agttattgat gattttggta caggttactc
    12781 aagcttgtct tatttaaaac aatttcccgt agataaactg aaaattgatc gttcgtttat
    12841 cactgaaatg gtaagcaatc agaatgatgc ggctattgct aaagcgatta ttaacctggg
    12901 ccacagttta aatcttcagg ttcttgcgga gggcgttgaa aatgaatttc aaagagactt
    12961 tataacatct catggatgtg actatgctca aggatatttt tttaaggctc ctgatactcc
    13021 agaaaatata ttagaatttt taaaaagttt atctgaatcg aaaataaagt aatgactaat
    13081 tcattaagtg aagaattcct gttttctctc aaaactaaaa tcccatcata agtctctcca
    13141 aatcggtatg ttttttgcaa gcaaaggtta aattaatcaa gtagtttctg ttggctttgt
    13201 ttattttatc ttttatgttg tttatatgaa gggcaagtat atagaacaac tcaaaatgac
    13261 aggttgagcc tgagttttat ttttattcaa gcaatatatt gattgaattt gtgtattttt
    13321 taaggagatt cggaatagat gtcgtgttga tatatagaat gggttgggag gataaatgaa
    13381 gcacattacc ataattggag ccgggttagc gggaactttg tgtggtttat atcttgctag
    13441 aagaggctat gaagtagagt tgtttgaatc aagaccagac attcgtaata gtccgactga
    13501 ttatggccgc tccattaatc ttgctttgtc gtgcagagga attaccgctt taaaagcaat
    13561 gaacctgtta agtgaagtga ataaaattat ggttccaatg cgggcaagag ctattcacga
    13621 agccaatggc gaggttcact atcaaccatt tggacgtcac attgatgaat atatcaatgc
    13681 tatttctcgt tctgatctca atgccttgct tttaaataaa gcggaattat gccctaacat
    13741 taaattacac tttaatatga aattgcactc tcttgatatt cataataaaa aaattaaatt
    13801 tgaaa
//
LOCUS       DACVWI010000079        13734 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.079, whole genome shotgun sequence.
ACCESSION   DACVWI010000079 DACVWI010000000
VERSION     DACVWI010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13734
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.079"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            19..411
                     /locus_tag="JBH85_08290"
     CDS             19..411
                     /locus_tag="JBH85_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946199.1"
                     /translation="MNGTHKEKEITMSNKAKNTHLKNGDSQTKQAYTNQASPLFFSQK
                     QITPSSGTLETKKPQEGKQPTQEISLETTTDILLAAILQELKTQNMIELMKLKAQQEH
                     EQEELETIEAMKEKDDARFNEIRQTMYA"
     gene            complement(539..1609)
                     /locus_tag="JBH85_08295"
     CDS             complement(539..1609)
                     /locus_tag="JBH85_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0946200.1"
                     /translation="MKTGRFDQAQADAFAERLLSVLNDAALTLMISIGHRTGLFDVMD
                     KLDFASSEVIAEAAGCNERYVREWLNALVVGGIVDYDAHTKAYQLPAEHASFLTRKSS
                     PQNMAVVAQFIPVLAYVENGIVDAFKHGGGVPYEAYHRFHEVMAEESGQTILSSLTDK
                     ILPMVHGLVDKLNQGIQVLDIGCGYGRALILMAKTYPQSQFTGYDLCDETIAHAVHSA
                     KKNKIQNIHFEKMDLSVWDEQEKYDLITSFDVIHDQAKPAQVLSNVFKALKPHGIFLM
                     QDIKTSSDVAGNVHHPLGALIYTISCMHCMTVSLSQNGLGLGAAWGEELAEKMLVEAG
                     FGKIEKHYLEHDIMNTYYVMRK"
     gene            1668..1869
                     /locus_tag="JBH85_08300"
                     /pseudo
     CDS             1668..1869
                     /locus_tag="JBH85_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096155.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1979..3178)
                     /locus_tag="JBH85_08305"
     CDS             complement(1979..3178)
                     /locus_tag="JBH85_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HAU0946201.1"
                     /translation="MIKSFRVTVFLFLVSGLILARDMHAFPSGLESNQDKLVYFQLEA
                     ETFYSPKPVTIEGQLYLTYEVFLANVGDYLFSLENVEVLNGRKPYKVLFSYNQEELRK
                     MIYSFSGHSNHLTSDLTLRPGERGLLFFMVKFDSLDEIPEKIMHRFHLYSSKTKISEE
                     GVRYSFLAAPAYVKITKPLVIANPLDGKHWMAINGPSNHSIHRRARVAAHGIVYYPER
                     YAIDFMQFGADGHVYKENPNKNENYYSYGANVYSVADGEVVAVYDGVPDNTPPGRDYP
                     VTLINMAGNHVIIKIGKHQYALYAHLIPHSIKVTKGELVRKNQLIAKLGNSGNSDAPH
                     LHFHVIDKPSPLIGQGTPYAFEHFSTEEYRFAGDEWESPIVYEGRLTEHHHELVHENA
                     LMNFAEK"
     gene            complement(3233..3805)
                     /locus_tag="JBH85_08310"
     CDS             complement(3233..3805)
                     /locus_tag="JBH85_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946202.1"
                     /translation="MALIRDSKSQVMSVFKFQPLGIKDLNQLYQWFQEPIINHWYARD
                     KSWSLDEITEKYEPRIAGMEHVPSFIVYKDDLPFGFVQFYILTDSLPDGIDGYESFLF
                     EKYNPRDLAGIDLFIAESEGRGRGLGVELINRFIDKFLTRFKAVVVDPDVNNQQAIRC
                     YEKAGFQQTGFSQDPNHLIMIKSLSLITGN"
     gene            complement(3995..5341)
                     /locus_tag="JBH85_08315"
     CDS             complement(3995..5341)
                     /locus_tag="JBH85_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HAU0946203.1"
                     /translation="MKKWIISVLLLVVIVLCFYPIIGMMALSTVKKNVDNIPRNPFLT
                     WQLKDNHRGWFCSTAVLNLLVDLPAQENKDAQGNVKVQPALHLSLDFPIVIHHGPFIM
                     TNNGLHFGLAWVTTKPETHYGALINYLNQTVVSYSLPSINMQGTNNGDQGNFVFVWQG
                     LSAKLKVNPKVDKASGHVTMYGMSTKVQETDVRIGKVKINFALNRYMDDLWLGDSSIL
                     LSSVSTITNSQPVFDLQDLSMDAWAGINNNLLDFNLQLSLNKFLMNNNSYGPGQLKIE
                     LKNLDPKAMAKLNQLNYDYPSNQIAILAEIFNLLSKGATLNLNQELDTPQGHLSSSLN
                     LALTKSSFSNPGDLLQNLKGNGQFKAPIKLVKQLLFESIKSKTATPAADMSQSQVTEP
                     LVDVDAEAHKQTEEILQKWVNKGILKVEGDYYQASFTLENTQFTVNGQPFDPALLN"
     gene            5634..6698
                     /gene="legL7"
                     /locus_tag="JBH85_08320"
     CDS             5634..6698
                     /gene="legL7"
                     /locus_tag="JBH85_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegL7"
                     /protein_id="HAU0946204.1"
                     /translation="MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQ
                     AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK
                     TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ
                     ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY
                     IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL
                     GAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTN
                     IEDLNIPDELRESIQTCKPL"
     gene            6907..8433
                     /locus_tag="JBH85_08325"
     CDS             6907..8433
                     /locus_tag="JBH85_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HAU0946205.1"
                     /translation="MSELMSYMKIEELLLKDTMKKGQIPGVSIAYINNQGIISTQEIG
                     FTDGCGLVKMSKDPTQCPFQELVLGSKNELGIGTKNTVIAFNKELYYVDQAAKMVQKI
                     ALTEANKIAYEMLHAKCTETYQLADGNEHEFIAALTGRMPPTEVKPDTVFGAASLSKP
                     LFAYLVQKLVQANVSNTSQTGYDQFILPDTLKSFDLDTPLFHIIPLEEFNIDGMKFDL
                     SDESAAAHSKALTARMVLSHTTGLAHGEMKFQFLPNSQEKEHGYSNVGIIYLQQVIEK
                     LTGADLETLAQKHVFQPCGMVHSTYGPKPCAANSLWTTAGDYANFVKHLIHDSTIENP
                     FVPHTYMTKDKGLAGATGIAKGNIPDTILQHVAWGLGWGLQTNDEGRVITAYHSGDMN
                     DYRAWVVIDLQDKDKKNAVVFFANSHNGHILAEQIIPKTMQMEQAANYFFSKWGFARN
                     FAELGGKTTRLGIKSSSGSSDSSPDTSIQDEPVEIKKETEKSDTSSIETYTSGWTFNA
                     "
     gene            complement(8410..9330)
                     /locus_tag="JBH85_08330"
     CDS             complement(8410..9330)
                     /locus_tag="JBH85_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0946206.1"
                     /translation="MAIPFKRINLNLILHLDALLSERSVSAAAEKVFVSQPAMSSSLK
                     QLRELFKDPLLIPGKGEYFLSPKAKELQPQLEQVMFFIRNILQPNERFDPFQTKRSFK
                     IALPDYVELILLPSLMAALEKLPHIVIETTIQSMADDPHLFIDENVDLAIGAINENSL
                     SAQLKVEKLYEEEIICFASKNNPLINRPLSLEDYISNKHIAFSFNQERYSHSAEYLYK
                     RKLVRNDMLFVKNILPAIFAVANSDAVISTAPSFLINMFARQFNLGMQPLPFNLEPTP
                     IYLVTHSKSQYDEGVSWLAKLVSSSIKSPS"
     gene            complement(9515..10054)
                     /locus_tag="JBH85_08335"
     CDS             complement(9515..10054)
                     /locus_tag="JBH85_08335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946207.1"
                     /translation="MFGELFASSIVLGVRYYSNQAYQAVAGLLGQIERFGIGYTREFI
                     RDPKSMIQSLTSKARSSEAGYSVVSLGYLGGNYAVITPKSQSQLTELLNQFDQEKSGR
                     RGHASFKFFSGNDFFIISDIPFSVGLRNCPAFAVTESLFKVTIAKFVSDYQLQLVKKD
                     EDDSTLHITSRDKSFGLMQ"
     gene            10351..11265
                     /locus_tag="JBH85_08340"
     CDS             10351..11265
                     /locus_tag="JBH85_08340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946208.1"
                     /translation="MATTLIQTPSYTKNLTLNLDDYPGGVAIWGALPALFDTSNQGFD
                     RGVHVHARLADSSKKVIDATYDHVTVISGYRIFTITEEAAVHFSMSAIFDIKITSLTC
                     QHCSQLITSVGYAAVRPSRQHQCNHCGEITTTTSDCISNPIMLLKELIGDEQVKRPAV
                     IPNRTIAIDPDKYSGGIQIWGSNPSIIWTAKRLEESAIHIHAYNENGKRIIDNTYGSV
                     SLDGHKLDIEMIRVLQIQLALPNLALLLTTVYCPHCGAEQFDRGIWAVSAHNHRVCLL
                     CKQTFISQDVISNPAFDVLTHVSGVISQ"
     gene            11262..11663
                     /locus_tag="JBH85_08345"
     CDS             11262..11663
                     /locus_tag="JBH85_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HAU0946209.1"
                     /translation="MNTLKTIFKIGALIFNEKNQLLAVHKKGKPPMELIVPGGVMEEN
                     ESDEETLRREIKEELDSDIISFQFYKQFEDKAIYEEKWLVMRTYIVTLGNAPKPANEI
                     DQLVWLGHDYHQSGYRFGSILGKQIIPDFFK"
     gene            complement(11747..11953)
                     /locus_tag="JBH85_08350"
                     /pseudo
     CDS             complement(11747..11953)
                     /locus_tag="JBH85_08350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844568.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            12058..13155
                     /gene="lem23"
                     /locus_tag="JBH85_08355"
     CDS             12058..13155
                     /gene="lem23"
                     /locus_tag="JBH85_08355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem23"
                     /protein_id="HAU0946210.1"
                     /translation="MKKKDEHNNLTKGKENEHNTISTNTHLLFSKPPGINADTANHMA
                     SSIDRLKDFDSSKQSLWLKYSEEIINEFCALLPEFPKKKPKVREDIRCPEEALLTQVG
                     CAYAFLSSKRREVAKLLKHGPLRHQFGLFNKPGFASIDDFNLSKDIPSQKDKIYEHLS
                     LLISQPNPFIEVKKNHREAEGSSIYTITFKMKPDEIEQVHKKNLDSNKPFIENDTVLT
                     ITFNDYGKNDNRTSIVIDHCPTPFAENYTSESSYFKVQFELIEPYFQACQAWEPSDGI
                     DHFLENAGRIVYILARMQPVGRGNSAIVEWMIRGLAQIKNIELGPFNPDEKIGWDFKA
                     FLTPEIQDYAHWFSEKAFAYSQLKNVTSLGQ"
     gene            complement(13350..13655)
                     /locus_tag="JBH85_08360"
     CDS             complement(13350..13655)
                     /locus_tag="JBH85_08360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2407 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946211.1"
                     /translation="MYNVVSFNNEGVEHMKPTSEKSKEIRKKYKAPGASDEQLANSIK
                     VASEFEYKNSSTFGWGGVYMVDRFQSMITGRAITNNTQKLLDAQALEEEASKANLKQ"
BASE COUNT         4391 a         2809 c         2527 g         4007 t
ORIGIN      
        1 ctcaagattt gcattaatct gaatgggact cacaaggaaa aggagatcac catgagtaac
       61 aaagcgaaaa acactcacct caaaaatgga gatagtcaaa ccaaacaagc ttataccaat
      121 caggcttcac cacttttttt tagtcaaaag caaataaccc cctcatcggg aacactggaa
      181 acaaaaaaac cacaggaagg aaaacaaccc actcaagaaa tcagccttga gacaaccaca
      241 gacattttat tagctgctat tttgcaagaa ttgaaaacgc aaaatatgat tgaactcatg
      301 aagctcaaag ctcaacagga acatgagcaa gaggaattag aaaccattga agcaatgaaa
      361 gagaaagatg atgcccggtt taatgaaatc cgtcaaacga tgtatgcctg attaacagga
      421 catccttact taaccaatta acggataacc gttaattggt ttatcctctg acaagagtaa
      481 atgttaccta aaagaaaagc ccctaacctc attagatttc ttacataatc tgtttatttt
      541 atttacgcat cacatagtag gtattcataa tgtcatgttc cagataatgc ttttcaattt
      601 ttccaaaacc agcctcaacc agcatttttt ctgcaagctc ctctccccag gccgcgccaa
      661 gacctaagcc attttgtgag agggatacag tcatacaatg catacaggag atagtgtaaa
      721 taagcgcccc cagcggatga tgaacattcc ctgccacatc actggaggtt ttgatatcct
      781 gcatcaggaa aataccatga ggcttcaatg ccttgaatac gttgctcagt acctgcgctg
      841 gcttagcctg gtcatgaatc acgtcaaagc tggtaataag atcatatttc tcctgctcat
      901 cccagaccga caaatccatt ttttcaaaat ggatattttg tattttattt ttcttggctg
      961 agtgtacagc atgagcaatg gtttcatcac acagatcata accggtaaat tggctttgag
     1021 gataggtttt agccattaat atcaaggcac gcccataacc acaaccaata tcgagcacct
     1081 gaattccctg gttcagtttg tcaaccaagc cgtgaaccat aggtaaaatt ttgtcagtca
     1141 aggaagataa aatcgtttgt ccactctctt ctgccatgac ttcatgaaaa cgatgataag
     1201 cctcataagg aacaccgcct ccgtgtttaa aagcatccac tatgccattt tccacatagg
     1261 ccaaaactgg aataaactgc gctaccactg ccatgttctg tggcgaagat tttctcgtaa
     1321 gaaaagaagc atgttcagcg ggtaattgat aggcttttgt atgcgcatca taatccacaa
     1381 tgcctcccac cacgagagca ttaagccatt ccctgacata acgctcattg cagcctgccg
     1441 cctcggctat cacttcactg cttgcaaaat caagcttgtc catgacatca aacaagccgg
     1501 tacgatgccc aatggatatc atcaaagtta gtgcagcatc attgagaaca gacaaaagac
     1561 gctcagcaaa cgcatcagct tgggcttgat caaaacgtcc tgttttcatc ttgcgatccc
     1621 caaaaaggta atcttcaaaa tcccatagag aaaataatgt atctaacgta atagataagg
     1681 attataaaag aagcagtcga tatccagagg ccgtatgggc tgaggagatg cgtacgcatc
     1741 gtctcgaagc cttggcaaga aacattaaat tccatacaag gcttcgagac ggcataaatg
     1801 cctcctcagc ccgaacgatt caagacaacg acctgtctta tccacaactc acgttacctc
     1861 atattataga ctatgggaca ttccatgtta tgagcatcaa tttgccaggg acccatttaa
     1921 tacttcatgt ataaaagcgt cttcctaaaa tactctattt ttatcgtcta atattcgatt
     1981 atttttctgc aaaattcatc aaagcatttt catgaaccag ctcatgatga tgttctgtta
     2041 atctcccctc atagacaata ggggattccc actcatcgcc ggcaaatcga tattcttctg
     2101 tagaaaaatg ttcaaatgca tagggtgtcc cttggccaat taaaggagat ggtttatcaa
     2161 taacatgaaa atgcaaatgc ggtgcgtcag aattgcccga attacccaat tttgcaatta
     2221 attgattctt acgaaccaac tcccccttag tgaccttaat actatgggga attaagtggg
     2281 catagagagc atattggtgt tttcctattt taataatcac gtgattgcca gccatattaa
     2341 tcagcgtaac aggataatca cgtccaggcg gagtattatc aggaacacca tcgtaaactg
     2401 cgactacctc accatccgca accgagtaaa cattggcccc ataactgtaa tagttttcat
     2461 ttttgttggg attttcttta tagacatgac catcagctcc aaattgcatg aaatcaatgg
     2521 cgtatcgttc gggataatac acaatgccat gggctgcaac ccttgcgcgg cggtgtatgg
     2581 aatgattgga tgggccatta attgccatcc aatgctttcc atccaaagga ttggcaatca
     2641 ccaggggctt agtaattttt acataagcgg gagcagccag aaaagaatac ctgacaccct
     2701 cttcggatat tttagttttc gatgaatata gatgaaaccg atgcattatt ttttcaggga
     2761 tttcatcaag actatcgaat ttcaccataa aaaataacaa accacgctca cccggtctta
     2821 atgtcaagtc tgatgttaaa tgattagaat gaccactaaa agaatatatc atctttcgca
     2881 gctcttcctg gttataggaa aaaagaactt tataaggttt tcggccattt aatacttcaa
     2941 cgttttctaa agagaagagg taatcaccca cattggcaag aaaaacctca tacgtgagat
     3001 aaagttgtcc ttcaatagtc acgggttttg gagaataaaa cgtttcggct tctaactgaa
     3061 aataaaccaa tttatcctga ttggattcca atccagaggg aaaagcatgc atgtctcgtg
     3121 cgagaatcaa accacttaca agaaataaaa aaactgtgac acgaaatgat tttatcattt
     3181 aaaacccttg gtaaattgcc aaaacaacgt tctattttca ataggctcat cattaattcc
     3241 ctgtaatcaa tgacaaggat tttatcatga tgagatgatt gggatcctgg ctgaaacctg
     3301 tttgctgaaa gcccgctttt tcgtagcaac gaatggcttg ttgattgtta acatcggggt
     3361 caacaacaac agctttgaaa cgggtaagaa acttatcaat aaagcgatta atgagttcca
     3421 cccctaatcc tctacctcgt ccctcgcttt cagcaataaa caaatcgatt ccagctaaat
     3481 ccctgggatt atatttttca aagagaaaac tctcataacc atcaattcca tcgggtaaag
     3541 agtctgtgag tatgtaaaac tggacgaacc cgaaaggcaa gtcatcttta tatacaatga
     3601 aacttggaac atgctccata cctgcaattc ttggttcata tttttctgtg atttcatcca
     3661 gtgaccaact tttgtctctc gcataccaat gattaataat tggctcctga aaccattgat
     3721 acagttgatt taaatccttg atgcccagag gttgaaattt aaaaacactc atgacttggc
     3781 tctttgaatc ccttatcaat gccatgacga ctcacatctg aggcatgcca aattgatttc
     3841 catatgtcag gtttgcggat aatcatgatt cactatactg taggcaaaaa ctgagtgggt
     3901 attctaccac agttttcatc gcctggattt gcttgtgatt gacatagaag atcatctcat
     3961 cagtgcaggt tgagcaaatt gcccaaccgc taatctaatt caataacgct ggatcaaatg
     4021 gctgcccatt cactgtaaat tgggtgtttt ccagagtaaa tgaggcctga tagtaatcgc
     4081 cttcaacctt taagatgcct ttattcaccc atttttgcaa gatttcttcc gtttgtttat
     4141 gggcttcagc atcgacatca accagcggct ctgtaacctg agattgagac atatccgctg
     4201 ctggtgtagc tgtttttgat ttgattgatt caaataacag ctgcttgacc agtttgattg
     4261 gcgctttaaa ctgaccattg cctttcagat tttgcaacag atccccagga ttgctgaatg
     4321 aactcttggt tagagccagg ttcaacgaac tggacaaatg cccctgtggc gtatccagct
     4381 cttgattcag attgagtgtc gcacctttgg aaagcagatt aaaaatttca gccaggatcg
     4441 cgatttgatt ggaaggatag tcatagttca attgattgag cttggccatc gctttaggat
     4501 ccagattttt aagctcgatt tttaattggc caggaccata gctgttatta ttcattagaa
     4561 atttattcag ggataattgc aaattaaaat ccagtaaatt gttgttgatt ccagcccacg
     4621 catccatact cagatcttgc aaatcaaaca ctggctgtga attagtgatg gtagaaacag
     4681 aagacagcaa gatagatgaa tcaccaagcc ataaatcgtc catgtagcga ttcaatgcaa
     4741 aattgatttt gactttacca atcctgacat cggtttcttg cactttcgta ctcataccgt
     4801 acatagtcac atgaccagag gccttatcaa ccttgggatt gactttgagc tttgcactta
     4861 agccttgcca gacaaaaaca aagttgcctt gatcaccatt gttcgtgcct tgcatattaa
     4921 ttgagggcaa actatagctg acaacggttt gatttaaata gttgatcaaa gccccataat
     4981 gggtttccgg cttggttgtg acccaggcga gaccaaaatg caagccatta ttggtcatga
     5041 tgaaaggacc atggtgtatg acgattggga aatcgagact caaatgaagc gctggctgca
     5101 ctttaacatt accctgtgcg tctttatttt cctgagctgg caaatcaaca agtaaattca
     5161 aaacggcagt ggagcagaac catccacggt gattatcttt taattgccaa gtcaggaagg
     5221 gattcctggg aatattatcg acgttttttt tcaccgtgct taaggccatc atgccaataa
     5281 tggggtagaa gcataagaca atgactacta acagcaacac actgataatc cattttttca
     5341 tgactgtcca acattaatcc ttagtaatta atatttagac cagaaaaagc tgattgtaaa
     5401 atagcccatc tatctgaaag aacctttaat acttgagcga gccggctgct caagtcttcc
     5461 ctagcaaact ttcaatttct aactggattt tcaatagaac aaatccactt taatccagca
     5521 tttataagaa atttgtatac acaatataag aacaattgat tttaatttag accccatggt
     5581 ggatattatg atcattttga tcaaacaaag actatcattt cgagattttc ataatgaatt
     5641 acaagctaac attacaccca ggcagcaacc cagtagagga gtttacctct atcccacatg
     5701 gggtcacttc acttgattta agtttgaata acttatacag tataagcact gttgaattaa
     5761 tacaagcctt tgctaataca cccgccagcg tcacttcact gaatttgagt ggaaattccc
     5821 taggctttaa aaacagtgat gaattagttc aaattctcgc agccatccct gccaacgtca
     5881 cttcattgaa tctgagtgga aatttcttaa gttataaaag cagtgatgaa ctagtaaaaa
     5941 ccctggcagc catccctttc accatcaccg tactggattt aggctggaat gatttcagca
     6001 gtaaaagcag ctcagaattt aagcaagcct tttccaattt acctgccagc atcacttcac
     6061 tgaatttgag aggaaatgac ttaggcatta aaagcagcga tgaattgata caaatcttgg
     6121 cagctatccc tgccaacgtc aattccttga atttgagagg taataactta gccagtaaaa
     6181 actgtgctga attggcaaaa ttcttggctt ccattcctgc tagtgtgact tcactggatt
     6241 taagcgcgaa tctcttaggc ctgaaaagct atgctgaatt agcatatatc ttttcttcta
     6301 tcccaaatca cgtggtttca cttaatttgt gccttaattg tttgcatgga ccatcccttg
     6361 aaaatttgaa actccttaag gattcactca agcatctaca gactgtttat ttagactatg
     6421 atatcgtcaa gaacatgtcc aaagaacaat gcaaagcact aggtgccgca ttccccaata
     6481 tacaaaaaat catcctggtc gataagaatg gcaaagaaat tcatccgtca cattctatcc
     6541 cgatttctaa tctcattaga gaactctctg gaaaagcaga tgtaccatcc ttgttaaatc
     6601 aatgccttat ttttgcccaa aaacatcaaa caaacattga ggacttgaat attcctgatg
     6661 agttaaggga aagcattcaa acctgcaaac ctctctgatt tatggtcttg aagcttcctt
     6721 ctattgcttt tgtgaataag ttaaaaaagc gatgaagtca ggattaatta atcgtctgca
     6781 ttatgttgta gcaatgcagc aaaaaccggg gtattaacgg gtttttacga tatttttgcg
     6841 aaaaaaattt ttgagtaaat cgaacacgtt aacacccaaa gtataattta tgaccaaatt
     6901 atttttttga gtgaacttat gtcttacatg aaaatagaag aacttctttt aaaagatacc
     6961 atgaaaaaag gccagatccc gggtgtatcc attgcttata tcaataatca aggaatcatt
     7021 tccacccagg agataggttt tacagatgga tgtggccttg tcaaaatgtc aaaagatccc
     7081 acccagtgcc catttcagga gttggttctt ggatctaaaa atgaattagg tatcggaacc
     7141 aaaaacacgg tcattgcatt taacaaggaa ctttattatg ttgaccaggc agcaaaaatg
     7201 gttcagaaaa ttgcgttaac agaggcaaat aaaatagcct atgaaatgtt gcatgcaaaa
     7261 tgcaccgaaa cctatcaatt ggctgatggc aatgaacatg aattcattgc agctctaaca
     7321 ggtcgcatgc caccaaccga agtgaagcca gacaccgttt ttggcgcagc atctctaagc
     7381 aaaccactct ttgcttatct ggtacaaaaa ttggtacaag ccaatgtaag taatacatct
     7441 caaacaggat atgatcaatt tattctgcct gacactttaa agagctttga tttggatact
     7501 ccccttttcc atattatccc cctggaagaa ttcaatattg acggcatgaa atttgacctg
     7561 tctgatgaat ctgccgctgc tcattctaaa gcactaaccg ccaggatggt gttatcgcat
     7621 acgactggac tagctcatgg ggaaatgaaa tttcaatttc tgcccaactc tcaagaaaaa
     7681 gaacatgggt attcgaacgt tggaattatt tatttacaac aagtgattga aaaactgact
     7741 ggtgcagatc ttgaaacact ggcccaaaaa catgtgtttc aaccctgcgg tatggttcat
     7801 agcacttatg ggcccaaacc ctgcgcagcc aattctctat ggactacagc aggagattat
     7861 gccaatttcg tcaagcattt aattcatgac agcacgattg aaaacccctt tgttccccac
     7921 acttacatga caaaagataa ggggttggca ggagcaaccg gaatagccaa aggcaatata
     7981 cccgatacta ttctgcaaca tgttgcatgg ggtttaggct ggggattaca aaccaatgat
     8041 gaaggaagag ttatcactgc ctatcattca ggcgatatga atgattacag agcgtgggta
     8101 gtgatcgatt tacaggataa ggataagaaa aatgctgtgg tatttttcgc taattcgcat
     8161 aatgggcata ttctcgctga acaaattatt ccgaagacca tgcaaatgga acaggctgcc
     8221 aattattttt tttcaaaatg gggttttgcc agaaacttcg ctgaattagg cggaaaaact
     8281 actcgactgg gtattaaatc atcctcaggt agctctgata gctctcctga tacttccatt
     8341 caggatgagc cggttgagat aaagaaggag acagaaaaat cagatacttc ctcaatcgag
     8401 acttatactt caggatggac ttttaatgct tgaactgacc agcttggcta accaggagac
     8461 tccctcatca tactgacttt tgctatgggt caccagataa ataggagttg gttccagatt
     8521 gaaaggtaaa ggttgcattc ccagattaaa ctgtctggca aacatattta tcaaaaaact
     8581 tggggctgtg gaaatcaccg catcggaatt ggctactgcg aaaattgcgg gcaagatatt
     8641 ttttacaaaa agcatgtcat tacgtaccag ctttctttta tataaatatt cagcggagtg
     8701 gctataacgc tcctgattaa aactaaatgc gatatgttta ttgcttatgt aatcttccaa
     8761 agacaatggc ctgtttatga gtggattgtt tttgcttgca aaacaaataa tttcctcctc
     8821 atacagtttt tcaactttga gttgcgcgga tagagaattt tcattaatag ctccaatcgc
     8881 cagatctaca ttctcatcga taaacagatg tggatcatca gccattgatt gaatcgttgt
     8941 ctcaataaca atatgaggca gtttttcaag cgccgccatc agggatggca acaaaattaa
     9001 ttcaacgtaa tcaggtaaag cgattttaaa tgatcttttg gtctgaaagg gatcaaatcg
     9061 ctcattcggt tgcagaatat ttcttatgaa aaacatcact tgctctaatt gtggctgcaa
     9121 ctctttagct tttggagaga gaaaatattc ccctttacca ggaattaata gcgggtcttt
     9181 aaataactct ctcagttgtt ttaaagagga actcatggct ggttggctga caaacacttt
     9241 ctctgcagca gcactgacgc ttctctcgct tagtaaagca tccagatgta gtatgagatt
     9301 taaattaata cgtttaaagg gaatcgccat tcgatcctct cggcaattgt tctcttctta
     9361 tattagtata agaaatttaa aagcatccaa tatggataat tcattatcaa tgacagagtg
     9421 tgttttgaga ggggttacaa tgccacttac cgaaccaagt aacgctgtca aatagacctc
     9481 attacctggt atcaatctat tgttctttcc agtgctattg cattagtcca aaagatttat
     9541 ctctggaagt aatgtgtaat gttgaatcat cctcatcttt tttaaccaat tgaagttggt
     9601 agtctgaaac aaacttggca atcgttactt taaataagga ttcggtcact gcaaatgcag
     9661 ggcagttgcg cagtcctact gaaaagggaa tatctgaaat aataaaaaaa tcattaccag
     9721 aaaaaaattt aaacgaagca tgccctcttc gaccagattt ctcctggtca aattgattca
     9781 ataattcagt cagttgagat tgagactttg gtgtaatgac ggcgtagttt ccccccaaat
     9841 atcccaaact gacaacacta tatcctgctt cactgcttcg tgctttagaa gttaatgact
     9901 ggatcattga tttaggatca cgaataaatt ctctggtata gccaatacca aatcgttcta
     9961 tttgccccaa aagacctgcc accgcctgat aagcctgatt ggaataataa cgaacaccca
    10021 acacgattga acttgcaaat aattcaccaa acataaatca tcccaaacta taggccaaaa
    10081 aattggacta tagtaataca tttagaaaat attgaacaca tccaggcgtt tttttatttc
    10141 atgttggctg attatatgat gtttattatt cacccctttc aaataccagg aaatgattcg
    10201 gacaccgata cttgtcaata gttagcagga gcgatacaat gactttgcct aaaaaattat
    10261 ggtcttcagc aagtctcgat tcctccggtg ctgggtataa agacataatt ttggtcgagg
    10321 gatactttcg tttttaatac gaggtatcct atggcaacga cattaattca aacaccctct
    10381 tatactaaaa atctaactct caaccttgat gattacccgg gaggagttgc aatttggggt
    10441 gcattacccg ctctttttga tacttcaaac cagggatttg atcgaggcgt ccatgttcac
    10501 gcgcgtcttg ccgattcatc taaaaaagtg atagacgcaa cctatgacca tgtcacagtt
    10561 atttccggat atcgtatttt tacaattaca gaggaagctg ctgttcattt cagcatgtcc
    10621 gccatttttg atatcaaaat tacatcatta acatgtcagc actgctctca gttgattact
    10681 tccgttggct acgctgcagt caggccatca cgccagcatc aatgtaatca ttgtggtgaa
    10741 atcacgacta caacttcaga ctgcatcagc aatccaatta tgttacttaa agaattgata
    10801 ggagatgagc aagttaaaag gcctgcagtt atccccaatc gtaccattgc aattgatcct
    10861 gataaataca gtggtggcat tcaaatttgg ggctctaatc catccattat ttggactgct
    10921 aaaagactgg aagaaagcgc tatccatatt catgcttaca atgaaaatgg caaaaggatt
    10981 atagataata cttatggaag tgtttcttta gatggtcaca aactggatat tgaaatgatt
    11041 agagttctgc aaatccaatt ggcattgcca aatttggcat tactcctgac aaccgtgtat
    11101 tgtcctcatt gtggtgcgga acagtttgat cgggggattt gggctgtttc tgcgcataat
    11161 cacagggttt gcttactatg taaacaaact tttatatctc aagacgtgat aagtaaccct
    11221 gcttttgacg tactaactca tgtttctgga gtgatctctc aatgaacaca ttaaagacta
    11281 tatttaaaat aggcgcgctt atttttaatg aaaaaaatca gttacttgct gtacataaaa
    11341 aaggaaaacc acccatggaa ctcattgttc caggtggcgt tatggaggaa aatgaaagcg
    11401 atgaagagac cctgcgtcga gaaatcaaag aagaacttga ctccgatatc atatcatttc
    11461 agttttataa gcaatttgaa gacaaggcaa tctatgagga aaaatggctg gtaatgcgta
    11521 cttacattgt cactctcggc aatgccccta aacctgctaa tgagattgat caactggtat
    11581 ggcttgggca tgattatcat caaagtggct atcgttttgg atccatatta ggcaaacaaa
    11641 ttattcctga tttctttaaa taaaccattc ccagacattc acagcaactt ttggctcaga
    11701 ccaggaagtg aagtccgaac ctttatgaga tgagaataaa atgatgctat ttggttaaac
    11761 aaggcactaa tccgaattgt tgatcatgaa tatcccgctc agcatctgaa caatgccgaa
    11821 cttcagtagt tacctttgga gatgactctt taaaaaaaac caaccttttt ccagaaagac
    11881 cttcatgacg ggctatatcc gccatcattt tacgattgat ctgactggct aatttcgttt
    11941 cctcaattaa aaaacatgta gattgattaa tggagttaca acaatgtaaa ttgattaata
    12001 agcaaaatta atatgactga ctatacttaa gtaattcatt atagtttttc gggtattatg
    12061 aaaaagaaag acgagcacaa taaccttacc aaaggtaagg agaatgaaca caataccatc
    12121 agcaccaata cccatttgtt attttcaaaa ccacctggta ttaatgccga tactgcaaat
    12181 catatggctt catctattga ccgcttaaaa gattttgaca gctcaaaaca aagcctttgg
    12241 ttaaaataca gtgaagaaat catcaacgaa ttctgtgctt tattacctga gtttcccaag
    12301 aaaaaaccca aagtacgtga agacattcgc tgcccggaag aggcattatt aacccaagtc
    12361 ggttgtgcct atgccttttt atccagtaaa agacgcgagg tagccaagct tttaaaacat
    12421 gggcctctaa gacatcaatt tggtttattt aataagccag ggtttgcttc aatcgatgat
    12481 ttcaatctca gtaaagatat cccttctcaa aaggataaaa tttatgagca cctctccttg
    12541 ttaattagtc aacctaatcc ttttattgaa gttaagaaaa accatagaga agcagaaggt
    12601 tcttctattt acaccataac attcaagatg aagcctgatg aaatagaaca agtacacaaa
    12661 aaaaatttgg attcaaacaa accatttatt gaaaatgaca cggtactgac gataaccttc
    12721 aatgattatg ggaaaaatga caacagaacc tcaattgtca ttgatcactg ccctactcct
    12781 tttgctgaaa actatacgag cgaatccagc tatttcaaag tgcaatttga attgattgag
    12841 ccttactttc aagcatgcca ggcctgggaa ccttctgatg gaatcgatca ttttttagaa
    12901 aatgccggaa gaattgttta tatactggct cgtatgcaac ctgttggacg tggtaattct
    12961 gcgattgttg aatggatgat tagaggcctt gcccaaatca aaaacatcga attaggacca
    13021 ttcaaccctg atgaaaaaat tgggtgggat tttaaagcgt ttctgacgcc tgaaattcag
    13081 gattatgctc attggttttc cgagaaagcc tttgcgtata gccaattaaa aaatgttact
    13141 tccctgggac aatgaattaa gacattgaat taaactgagt aaaccagcct atgtggtaaa
    13201 aaaatttata gaattgtaat aaatagatca aagataatcc cttaggatat aactgcaggt
    13261 aagaagataa aagagaacgc cgggattcaa gtcttgcttt tgactataag acacaagaaa
    13321 aatgaaagac ttgccccaag ataaaagcgt tattgtttta agtttgcttt agaagcttct
    13381 tcttcaagtg cttgagcgtc caataacttt tgtgtgttgt tagtgattgc acgacctgtg
    13441 atcattgatt gaaagcgatc aaccatatat acaccacccc aaccgaaagt gctgctgttt
    13501 ttatactcga actcagaagc taccttgata gaattagcca gttgctcatc agaagcccct
    13561 ggtgctttat attttttacg aatttcttta cttttttcac tggttggttt catgtgctca
    13621 acaccttcat tgttaaaact gacgacatta tacatgaata atattcaaac acaatttatt
    13681 taaaaaaaac aatttgatct aaatttttca caaacatttc tttagtaaaa cact
//
LOCUS       DACVWI010000080        13715 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.080, whole genome shotgun sequence.
ACCESSION   DACVWI010000080 DACVWI010000000
VERSION     DACVWI010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13715
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.080"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            101..373
                     /locus_tag="JBH85_08365"
     CDS             101..373
                     /locus_tag="JBH85_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946212.1"
                     /translation="MLIQPIEPVAVTIKMGKNSYECQMVSLSESELALKSYDYFEKGS
                     EVLFFAKYFRGHAVVCTIEFSDYCFTYKMEIVRIQFQPGLLINTRL"
     gene            complement(396..1265)
                     /locus_tag="JBH85_08370"
     CDS             complement(396..1265)
                     /locus_tag="JBH85_08370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HAU0946213.1"
                     /translation="MGAHGTYYIPKPSHWPLVGSIGLTTTLVGAACWLHHDWYGPYVF
                     IAGLCILVAMMFGWFGQVIYENSKGLYDLQVDRSFRWGMCWFIFSEVCFFGAFFGALF
                     FARYWSVPLLGGEMHPITHYTLWPEFKAVWPLLSNPNNQTFAGAHEAMGAWGLAAINT
                     IILLTSGVTITWAHWALKLRKRTQLLTGMSLTIALGVLFLMLQSYEYHEAYTEMNLTL
                     DAGIYGTTFFMLTGFHGLHVTIGTIMLIVILVRCKKGHFTPERHFAFEGVAWYWHFVD
                     VVWLFLFVFVYWL"
     gene            complement(1424..1969)
                     /locus_tag="JBH85_08375"
     CDS             complement(1424..1969)
                     /locus_tag="JBH85_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HAU0946214.1"
                     /translation="MMIEEKKQKKLLTILTLLVLGMFAFGFALVPIYNSLCKNLGING
                     KTKMEAVAYDEDKAKIAADREVLVEFVATNNSGVPWAFYPKTKKIKVHPGEIVKLAFY
                     AENKTDHTMTVQAIPSVTPGIAAKYLKKTECFCFTQQTLNGHEAMNMPLLFHLDTDLP
                     KNVNTVTLSYTLFDVTGRSSN"
     gene            complement(1979..3595)
                     /gene="ctaD"
                     /locus_tag="JBH85_08380"
     CDS             complement(1979..3595)
                     /gene="ctaD"
                     /locus_tag="JBH85_08380"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HAU0946215.1"
                     /translation="MKYAIAHSEDSHEDHGPEQGKGFMGFIKRWLFTTNHKDIGTLYL
                     WLALISFFVAGAMALVIRLELFQPGHRFVDPNFFNQMTTLHGLVMLFGVVMPAFTGMA
                     NWQIPMMIGAPDMALPRLNNWSFWILPFAFCLLFSTMFHAGGGPNFGWTMYAPLSTTY
                     APPSTDFMIFSIHMMGLSSIMGSINIIATILNLRAPGMTLMKMPLFVWTWLITAFLLI
                     AIMPVLAGAVTMMLADRHFGTSFFNAAGGGDPILFQHVFWFFGHPEVYVLVLPAFGVI
                     SEIIPTFSRKPLFGYHFMVYATVSIAVLSFIVWAHHMFTTGIPLGAELFFMYTTMLIA
                     VPTGIKVFNWVSTMFKGAMTFETPMLFAIAFVFLFTIGGFTGLMLALVPADFQYQDSY
                     FVVAHFHYVLVPGVIFALVAATYYWLPKWTGHMYNERLGKWHFWLSVISVNLTFFPMH
                     FLGLAGMPRRIPDYALQFANFNMIVTVAAFAFGLSQLLFLYNVVATVRKRGTNKDVAT
                     SRVWEGSHGLEWTLPSPPPYHTFTTPPEIK"
     gene            complement(3592..4797)
                     /gene="coxB"
                     /locus_tag="JBH85_08385"
     CDS             complement(3592..4797)
                     /gene="coxB"
                     /locus_tag="JBH85_08385"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HAU0946216.1"
                     /translation="MLNRLNICKLIALFSALTSAQSLWAAADEWQLNMYKGVTPLSND
                     MYYLHMVAMAVCAVIGVVVFGVMIYSLIHHRKSKGYQPASFHDNPKLEIIWTIIPFLI
                     LVGLAVPATRVLIRMDDTQLSDVTVKVVGYQWKWQYQYLDQGISYFSSLSTPYEQIEN
                     KQKKNQWYLLEVDNPLVVPVNKKIRFLVTSNDVVHSWWVPELGVKRDAIPGFMHEAWA
                     RIEKPGVYRGQCAELCGINHGFMPIVVKAVSEEEFDRWVSEQTKVEDIYAEKSDKPRE
                     QKTMTRDQLMTLGKQKYDLICSACHQPNGTGLPPMYPPLKGSSVAVGKPISRHIELLL
                     NGVPGSAMQSYKDQLTDEEIAAIVTYERNAWGNNTNDLIQPADVAALRHGTDIKPTMV
                     NKAKAGGLQ"
     gene            complement(4879..6492)
                     /locus_tag="JBH85_08390"
     CDS             complement(4879..6492)
                     /locus_tag="JBH85_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HAU0946217.1"
                     /translation="MGSLVIKKSIIAALVVALGIAGQSVQAESVPDETLQSEKAQTEK
                     VQAEKTETDLFSPVEQIMNPFYPKYPPTKPATGEQAELIKRGEYLAKMGDCIACHTDV
                     EGGTPAYAGGLPINTPFGLFYSPNITPDKETGIGNWTEKDFIRALKDGRDPKGRNYFP
                     VFPYVYFSKITDDDARALYAYFMSIPPVKLKNKSLPFPFGVPGARFALWGWNLLFFFP
                     QENAIEYDPDKSPEWNRGRYIVDTLGHCSMCHTPMNIFGSAKNRYYLTGSFIDGYWAP
                     NITKYGLESATHQEVADVFKAGELINKAGPVAGPMAEVNHNSLSHLTEADRLAIATYL
                     KTVESEEYLGVSPSDLPPTIARGRQVYLKACLICHQDNKMGAPVIGDSASWYTRLKSS
                     GLTGLYRHAIYGYNQMPVKGACVTCSDNDIISAVDYLLNASLTRSQWQDLASGGVKKY
                     PASGKAVYNENCAVCHNEGKLGAPKIGDKVTWKPLIAQNMDVLIENTIRGKNHLPNGG
                     CNHCSTDEVIEAIKYMVSQSKTEGNYSLW"
     gene            6874..7227
                     /locus_tag="JBH85_08395"
     CDS             6874..7227
                     /locus_tag="JBH85_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HAU0946218.1"
                     /translation="MSFKPAVELVKLQQNNREVAVIDGQKILIIWHDNQVHAIQSQCP
                     HLKLPLAKGKITESCSIICPFHKSEFDLKTGEAKCWSPWPPVVGNLLGKVSSRKNLKI
                     YPTQIENGQVLVDVD"
     gene            7293..8318
                     /locus_tag="JBH85_08400"
     CDS             7293..8318
                     /locus_tag="JBH85_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAU0946219.1"
                     /translation="MKIFNAMFSKVNGGLEQVFLNYIPALSSQGNQVIPIIHPKAEIR
                     NSCPQDHLITVHNFNQHDFFAIHRLKKLIQIHQPDCIITHSYRAAYLFKKTRTKVPKI
                     AVCHVKGHYDFGTDAIIALTEQMRQDIINSGIEEHRVFTIPNLIHIPDQIQYREPRNN
                     QIPTIGVCARFAAIKGVDVFINALAELKKRGVAFQAKIAGDGKEKEQYIELIRHHGLE
                     HEITLLGWIEDKESFYKNIDIFCLPSREESFGLVVLESMVHSLPMVLTRLSGPLEIAG
                     DSGCALFVPPEDPVSMADGLERLLRDKDLSKQLALKAFQRVQHYSSTKVAPMLHKVLE
                     NICDINQ"
     gene            8379..8984
                     /locus_tag="JBH85_08405"
     CDS             8379..8984
                     /locus_tag="JBH85_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HAU0946220.1"
                     /translation="MLIYFNGLLLGLSLIMALGPQNVFLIKQGARKNHAALSAVICFF
                     CDVILVCGSVAGLHHLLLAHPNLQVWMIWLGSAFLIYYAIKNLRSALSKNKQTVGETH
                     QPHTRMQIILFALGFSLLNPHAIIDTLVIVGSGSSQYPDHKLAFLAGVISASMIWFSS
                     LTMTTRYFSNLLTQNKVWQKIELLSGILMAYIAMKLITSSL"
     gene            9210..9635
                     /locus_tag="JBH85_08410"
     CDS             9210..9635
                     /locus_tag="JBH85_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1841 family protein"
                     /protein_id="HAU0946221.1"
                     /translation="MFYGDTVQETRQLFFISWNKYQNKKELSPLEKEIAQVILDHPEY
                     HKVIEQIPSFPEHTYYPELGETNPFLHMGLHLAVREQVATDRPQGIRTVYTKLIEKYQ
                     DPMAVEHLIMDQLAECLWLSQKNNRPPDENHYLITLQNL"
     gene            9760..10512
                     /gene="ubiE"
                     /locus_tag="JBH85_08415"
     CDS             9760..10512
                     /gene="ubiE"
                     /locus_tag="JBH85_08415"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HAU0946222.1"
                     /translation="MTNQKQTTHFGFKSVDWNEKEKKVAEVFHSVAKNYDRMNDLMSL
                     GIHHLWKRYTIELSHVRPGQSVLDLAGGSGDLTRLLLQKVGDSGQVILADINAAMLHV
                     GRDRLLDEGLFKNIRYVQGNAQCLPFADNSFHCITMGFGLRNVTDKDEALQSMYRVCK
                     PGGKLMVLEFSTPVFPGLKPVYDWYSFNILPKIGKFVANDEASYQYLAESIRMHPDQE
                     TLKAMIERVGFEDCHYHNLSGGIVALHIAYKY"
     gene            10514..11137
                     /locus_tag="JBH85_08420"
     CDS             10514..11137
                     /locus_tag="JBH85_08420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946223.1"
                     /translation="MIMLKEYSLKALQTAINQAMKLDEQMPQKLQKLDGKTLEMVITP
                     LNVNFYIRFKGSEMQLLHRIDGRPDTIIHSNPIGLIRLSLLPTSKARSLFNDKIRISG
                     DIELGQSVKKLFDEIDIDWEGHLAHFTGDVVAHQIGSFVRKGLEFKNQFSTSMQQNIT
                     EFLQEELRICPSRNELEDFFAEVDELVLSVDRLQAHINNLMSDDEGN"
     gene            11227..12876
                     /gene="ubiB"
                     /locus_tag="JBH85_08425"
     CDS             11227..12876
                     /gene="ubiB"
                     /locus_tag="JBH85_08425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HAU0946224.1"
                     /translation="MKSIKQLIRLIHINYILAKNGLDNVVVSIKLFAPLRFIVYLNPW
                     NWLRKEKLTRGEALRKSLEELGPIFIKFGQALSTRPDILPEDIAKELSKLQDKVPPFP
                     SHIAMNIIEQAYKQSAYDVFAQFDPIALASASMAQVHAATLKTGENVVVKILRPNMRR
                     LIEQDLSIMYTIAALADRYWPEGKRFKPKEIVKEFEHTLLDELDLMREAANAAQLRRN
                     FNQSPMLYIPEIYWDYCHHNILVIERIHGIPVTDIASLRDHGIDIKKLAERGVEIFFT
                     QVFRDCFFHADMHPGNIFVSYQNPKDPQYICVDFGIIGTLTDNDKRYLAENLVAFFNR
                     DYKRVAELHVESGWVSRDTPVAEFESSIRTVCEPIFEKPLKDISFGQVVFRLFQVARR
                     FHMEVQPQLILLQKTLLAIEGLGRQLYPELDLWATAKPFLEKWVREQMGPKAFIKRLK
                     QNLPFFTEQLPHMPKLIFDILEMKKDQLLTVHELTRLQSENNNQTIQWKSMGLGVFFS
                     FLSLGVISYFDLLDYNHLTTITIAGSVLAGIFVLINRKIRN"
     gene            12878..13063
                     /gene="tatA"
                     /locus_tag="JBH85_08430"
     CDS             12878..13063
                     /gene="tatA"
                     /locus_tag="JBH85_08430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019232773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HAU0946225.1"
                     /translation="MGLSGISPLSLLLILAIIIALFGTSKLKTIGSDLGEAIKNFRKA
                     MNSEETNDTQKDDHKPS"
     gene            13060..13329
                     /locus_tag="JBH85_08435"
     CDS             13060..13329
                     /locus_tag="JBH85_08435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HAU0946226.1"
                     /translation="MSLGELLLVFIVAIIVFGPSKLPMLATHLGMLVRKLNQLKEHTS
                     SFWQQQLNEIQLYENQRKAEKADQQYQQTDSENQNSDHKKNTRPS"
     gene            13517..>13715
                     /locus_tag="JBH85_08440"
     CDS             13517..>13715
                     /locus_tag="JBH85_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946227.1"
                     /translation="MITPFTKLCSVIHCVSSANSGVENAKTIAKTDELTNIFITHSLH
                     KSISLMQLKNIVHYNYRLFLLL"
BASE COUNT         4256 a         2914 c         2644 g         3901 t
ORIGIN      
        1 ttaatagtac atagtgaact ttcatattac gaacaatcac aatctaatat atgtctacta
       61 ttaagctaag caaatcaagt ctctcagtta agggggaact gtgctaattc aacctataga
      121 accagtggct gtaaccatta agatgggaaa aaatagctat gaatgccaaa tggtaagctt
      181 gtctgaatcc gaattagcat taaaaagtta tgattatttt gaaaaaggga gtgaggttct
      241 tttttttgca aaatattttc gaggtcatgc cgttgtatgc acaatagaat tttcagatta
      301 ctgctttact tacaaaatgg aaattgttcg tattcaattt caaccgggct tgcttatcaa
      361 cacccggttg taataaagga tgaattaggt taactctata gccaatagac aaagacaaat
      421 aggaacaacc acaccacatc cacaaagtgc caataccagg caaccccttc gaaagcaaaa
      481 tgcctttcag gagtaaaatg acccttcttg caacgaacca gaataacgat aagcatgatt
      541 gttccgattg ttacgtgcaa accatggaat cctgtcagca tgaaaaaggt agtaccataa
      601 ataccagcat ccagcgttaa attcatttcc gtatatgctt catgatactc atagctttgt
      661 aacatcaaga acaaaacgcc caaagcgatg gtcaatgaca tacctgtcag taattgagta
      721 cgctttctta attttaaagc ccaatgtgcc caggtgatgg ttaccccgga agttaataaa
      781 ataatggtat ttattgcagc caaaccccaa gcccccatgg cttcatgagc cccggcaaaa
      841 gtctgattat ttggattact cagcaagggc caaactgctt tgaactcagg ccataaggtg
      901 taatgagtaa taggatgcat ctcaccaccc aaaagaggga ctgaccaata tcttgcaaaa
      961 aacagggctc cgaaaaaggc tccgaaaaag catacttcag aaaatatgaa ccagcacata
     1021 ccccagcgaa atgaacgatc aacttgcaaa tcatataggc ctttgctgtt ttcatagatg
     1081 acttgcccaa accagccaaa catcattgca accaaaatac ataagcccgc tataaatacg
     1141 taagggccat accagtcatg atgtagccag catgctgcac caaccagtgt agtggtcaag
     1201 cctattgagc caaccaaagg ccagtgactg ggtttgggaa tataatatgt accgtgtgct
     1261 cccattatgc tttaatctcc tgtaacaata agtcattcag ccaaagctga tactcaaaga
     1321 ccgttgatat ttggctagcg tgaattgcat tgtcacgatt tcaagaaaca acgttcagaa
     1381 aatcgaggca agccagccgc aaaggtagac atatcaacga cgcctaatta cttgatctac
     1441 ctgtcacatc aaacaatgta taagacagag taaccgtatt cacatttttc ggtaaatccg
     1501 tatctaaatg gaatagtaaa ggcatattca ttgcctcatg gccatttagc gtttgttgag
     1561 taaaacaaaa acattccgtt ttttttaaat attttgctgc aattcctggt gtcacacttg
     1621 ggattgcctg aactgtcatt gtatggtctg ttttattttc cgcatagaat gccagtttta
     1681 caatttctcc tgggtgcact ttaatttttt ttgtcttggg atagaaggcc caaggcacac
     1741 cactgttgtt ggttgctacg aattcaacca agacttctct atctgctgca atttttgcct
     1801 tgtcttcatc ataagcaacg gcctccattt tggttttgcc gttgatgccc agattcttgc
     1861 aaaggctatt ataaataggg accagagcaa aaccaaaagc aaacatccct aagactaata
     1921 atgttaatat ggtgagcagt tttttctgtt ttttttcttc aatcatcaaa ctccaccttt
     1981 atttaatctc aggtggagtg gtaaacgtat ggtaaggtgg tggagatggc aaagtccatt
     2041 ccaatccatg tgacccttcc caaaccctgc tcgttgctac atccttatta gtgcctcttt
     2101 ttcttactgt ggctaccaca ttgtacagga acaacaattg cgacaaaccg aaagcaaaag
     2161 cagccactgt tacaatcata ttaaaattgg caaactgcaa agcatagtca gggattcgcc
     2221 ttggcatacc agctagcccc agaaaatgca tggggaaaaa ggtcaaatta actgaaatga
     2281 cagaaagcca aaaatgccat ttacccaaac gctcattgta catatgccct gtccatttgg
     2341 gtaaccaata ataagtcgct gctaccagag caaagataac gccgggcaca agaacataat
     2401 ggaagtgagc cacaacaaaa tagctgtcct gatattgaaa atcagccggt accaatgcca
     2461 acattaagcc tgtaaatcca cctatagtga ataaaaatac aaatgctatg gcaaacagca
     2521 ttggcgtttc aaaggtcatg gcccctttga acattgtact cacccagttg aacaccttga
     2581 taccggtagg taccgcaatc agcatggtgg tgtacataaa gaataattca gcccccaggg
     2641 gaattcccgt ggtgaacata tggtgagccc aaactataaa ggataataca gcgatgctca
     2701 cagtggcata aaccataaaa tgataaccaa ataatggttt acggctgaaa gtgggaatga
     2761 tttctgaaat aaccccaaaa gctggcaaga ccagaacata cacttcaggg tgaccaaaga
     2821 accaaaacac gtgttgaaac aggataggat ctccaccacc tgccgcatta aagaaagaag
     2881 taccaaagtg tctatcggct agcatcatag taactgcacc cgccagaaca ggcatgatgg
     2941 cgatcagaag gaacgctgta ataagccagg tccagacaaa taggggcatc ttcatcaagg
     3001 tcatgcctgg agccctcaag tttaaaatcg tggctatgat attaattgat cccatgatgg
     3061 atgagagtcc catcatatga atggaaaaaa tcatgaaatc agtactgggt ggcgcgtaag
     3121 ttgtagagag aggcgcgtac atggtccagc caaaatttgg accgccaccg gcatgaaaca
     3181 tggtagaaaa cagcagacaa aaagcaaacg gtaaaatcca gaagctccag ttgtttagtc
     3241 ttggcaaagc catatcggga gcacctatca tcatggggat ttgccagttt gccataccgg
     3301 taaacgctgg catgacgaca ccaaacagca tgactaatcc atgcaatgtt gtcatttggt
     3361 taaagaaatt aggatcgacg aatcgatgac caggctgaaa taactcaagc ctgataacca
     3421 aagccattgc tcctgcaaca aagaagctta tcaatgctaa ccataaatac agagtaccta
     3481 tgtctttgtg gttggttgta aatagccacc ttttgataaa tcccataaag cctttgcctt
     3541 gttcgggacc atgatcttca tgagaatctt ctgaatgcgc tattgcgtat ttcattgcaa
     3601 acctccagct ttagctttat taaccatggt aggtttaata tcggtaccat gtcgcagtgc
     3661 cgcaacatct gcgggttgaa ttaaatcatt agtattattt ccccaagcat tacgctcata
     3721 cgtaacaatt gctgctattt cctcatcagt cagttgatct ttataagact gcattgctga
     3781 gccaggaaca ccattgagga gtaattcaat gtgtcgtgaa attggctttc caacggcaac
     3841 agaactaccc ttgaggggag ggtacatcgg tggcaagcca gtgccattag gctgatgaca
     3901 agctgagcaa atcagatcgt atttttgctt gccaagcgtc attaactgat cacgggtcat
     3961 tgttttttgt tcacgcggtt tatccgactt ttcagcataa atgtcttcta ctttggtttg
     4021 ctcactaacc catcgatcga attcttcttc actaactgct ttcactacga taggcataaa
     4081 accatgatta attccgcaaa gctcggcaca ctgccctctg tagacacccg gcttttcaat
     4141 tctggcccat gcctcatgca taaatcccgg gatagcatct cgcttgacgc ccagctcagg
     4201 cacccaccat gagtggacta catcgttcga agtcactaaa aatcgaattt ttttgttgac
     4261 tggtacgact aaaggattat ctacttccaa caagtaccac tgatttttct tttgcttgtt
     4321 ttcaatttgc tcatagggtg ttgataagct actgaagtaa ctaataccct gatcaagata
     4381 ctggtattgc cacttccact gatagcccac caccttgacc gtcacatcgg acagctgcgt
     4441 atcatccata cggattaata ctcgggtagc tggaactgca agaccgacaa ggattaaaaa
     4501 cgggatgata gtccagatga tttccaattt tggattatca tgaaaacttg ctggctgata
     4561 tccttttgac tttctgtgat ggattaatga gtagatcatc acgccaaaaa caaccactcc
     4621 tattaccgca caaacagcca tagcgaccat atgaaggtaa tacatatcgt tgcttaaagg
     4681 agtcacccct ttgtacatgt ttaactgcca ctcatctgca gcagcccaca gcgactgcgc
     4741 agaagtcaag gcactaaata acgcaattaa tttacagata tttaacctgt ttaacatccc
     4801 aatccctcat ctcttcaagt agccgggaaa ccgactaatg tttaagctag ttcatttatt
     4861 caaatgttgc tggtaaccct accacaaaga ataattacct tcggttttag attgactgac
     4921 catgtatttg atcgcttcaa ttacttcatc tgtcgaacaa tgattgcaac caccatttgg
     4981 caaatgattt ttccctctga ttgtgttttc gatcaaaaca tccatatttt gtgctatcag
     5041 cggcttccaa gtcactttat cgcctatttt aggagcgcct aatttaccct cattatggca
     5101 aacagcacag ttttcattat atacagcctt tccactggca gggtattttt taacaccgcc
     5161 agacgccaaa tcttgccact gggatcgggt caatgatgca ttgagcaaat aatcgactgc
     5221 cgaaataatg tcattatcag agcacgtcac gcaagcaccc ttaaccggca tttggttata
     5281 accataaatg gcatgtcggt ataaaccagt taaaccgctg cttttcagac gtgtatacca
     5341 gctggctgaa tcaccaatca ctggagcacc cattttattg tcctgatgac aaatcagaca
     5401 ggccttcaaa tacacttgtc ttccacgtgc aatggtcgga ggcaaatcag aaggagaaac
     5461 acccaggtat tcttcactct ctactgtctt gagataagtt gcaatggcca acctgtctgc
     5521 ttccgtcaaa tgactcaagc tattatgatt cacttcggcc ataggtccag ctacaggacc
     5581 cgctttatta attaattcac cagccttaaa tacatcagcc acctcttgat gcgtcgctga
     5641 ttccaatcca tatttggtga tattaggggc ccaatatccg tcgataaaac taccagtcaa
     5701 ataatatctg ttttttgctg atccaaatat attcatgggt gtatggcaca tactgcaatg
     5761 ccctaaggta tcgactatat accttccacg attccattca ggggatttat ccggatcata
     5821 ttcaatggca ttttcctgag ggaagaaaaa caacaaattc catccccata aagcaaagcg
     5881 agccccaggg acaccaaaag gaaatggcaa tgatttgttc tttaacttaa cgggaggaat
     5941 gctcataaaa taagcataca gagcgcgagc atcatcgtca gttatcttgg aaaaataaac
     6001 atatgggaat actggaaaat aatttctgcc tttaggatca cgaccatctt taagagcgcg
     6061 aataaaatct ttttctgtcc aatttcctat gcctgtttct ttatcggggg taatattagg
     6121 gctatagaat aagccaaaag gcgtattaat aggtaaacca ccagcataag cgggggtacc
     6181 cccttcaacg tcggtatggc aggcaatgca atcacccatt tttgccagat actcaccacg
     6241 tttaatcaac tctgcttgct cgccagtagc tggcttggtc ggggggtatt tgggataaaa
     6301 aggattcatg atttgctcta ctggagaaaa caaatctgtt tctgtttttt cggcctgaac
     6361 tttttccgtc tgtgcttttt cagattgtaa cgtttcatct ggtacagact cagcttgtac
     6421 agattgccct gcaataccca gtgcaacaac tagcgccgca ataatagatt tttttataac
     6481 caaagagccc acgctccctc ctatttgttc ttatttttca cgactctcat gaggagacag
     6541 aataattgtc gcattgtata ctcctcgctt atcaagttgc aacgttattc gaccgtttaa
     6601 attcagccct gtttaaaaat tataattatg ccaacccagc tgtcacctgc cttatatccc
     6661 acaagctttt ctcgaaattt catcttttca tgaaacttca taatcaggct caaagacatc
     6721 attcagatat gatcattgat acgataccct gggctaactc agcaaaaata aggaattttg
     6781 ataacacaac tgatttattt tatcagcctt ctactaacag attaaattca tcactgatat
     6841 aatcctctga ttttcaatat agaggtaatt aacgtgtctt tcaaacctgc cgtagaatta
     6901 gtcaaattgc agcaaaataa cagagaagtc gcggttattg atggccaaaa aatactgatt
     6961 atctggcatg ataatcaagt acatgccatc cagtcacagt gccctcattt aaaattgcct
     7021 ctcgccaaag gaaaaattac ggaatcctgt tctattattt gcccttttca taaaagcgaa
     7081 tttgatttaa aaacaggcga agcgaaatgc tggtccccat ggccacctgt tgttggcaat
     7141 cttttgggta aagtatcctc cagaaaaaat ttaaaaatat acccaaccca gatagaaaat
     7201 ggacaagtat tggtggatgt ggattaatcg attttgcaac tcggcagcac ctttaagtaa
     7261 tatagaattg gggctgataa ggagaattta aagtgaaaat atttaatgcc atgttctcca
     7321 aggtcaatgg aggtttggaa caagtatttt taaattatat ccctgcttta agttctcaag
     7381 gcaatcaggt cattccaatt attcatccca aagcagaaat aaggaacagt tgcccccaag
     7441 accatttaat cactgtgcat aattttaatc agcatgattt ttttgcaatt catcgcctta
     7501 aaaaattaat tcaaatccat caaccggatt gcatcattac ccatagttac agagcagcct
     7561 atttgttcaa aaaaaccagg accaaagtcc ccaagatagc tgtgtgccat gtcaaaggcc
     7621 attatgattt tggtactgat gcgatcattg cactcacaga acaaatgcgt caggacatta
     7681 tcaattcagg gatagaggaa catcgggtat ttactattcc aaatctgatt catattccag
     7741 accagattca atacagggag ccaagaaata accagatccc gacaattggc gtctgtgccc
     7801 gatttgctgc aatcaaagga gtagatgtct ttataaacgc tttggcggaa ctaaaaaaga
     7861 gaggtgttgc ttttcaagca aaaattgctg gtgacggcaa ggagaaagaa caatacatcg
     7921 aattaattcg tcatcatggt ttggagcatg aaatcacttt acttggatgg attgaggata
     7981 aagagtcatt ttataaaaac attgatattt tctgtttgcc ttcccgggaa gaatcttttg
     8041 gcctggttgt actggaaagc atggtgcact ccttgcccat ggttctcact cgcttatcag
     8101 gaccactaga aattgcaggt gactcaggct gtgctctttt tgttccccca gaagaccctg
     8161 tcagcatggc ggatgggctg gaacgtctct tgcgagacaa agacctgtca aaacaacttg
     8221 cgctcaaagc gtttcagaga gtacaacatt actccagcac aaaagtcgct cccatgctgc
     8281 ataaagtttt ggagaatata tgtgacatca atcaataata aaacatcttg cacaatatta
     8341 tgatataatc gccttttttt actgtcctga atgcaatcat gttgatttat tttaatggat
     8401 tactcttggg gttatctttg ataatggctt taggcccgca aaatgtcttt ctgatcaaac
     8461 aaggtgcacg aaaaaatcat gccgctctct cggccgtcat ttgctttttc tgtgacgtca
     8521 ttttagtgtg cggtagtgtc gctggattac atcatttgct tttggctcat ccgaacttgc
     8581 aagtctggat gatatggtta ggctctgcct ttttgattta ttatgcaata aaaaacttaa
     8641 gaagcgcatt gtctaaaaac aaacaaaccg ttggggaaac gcatcagcct catacaagaa
     8701 tgcaaatcat tttatttgcc ttgggattta gcctgcttaa tcctcacgcc attatagata
     8761 ccctggtgat tgtgggtagc ggcagcagtc aatatcctga ccataaactg gcttttttag
     8821 caggggtaat ttctgccagc atgatttggt ttagttcatt aacgatgact actcgttatt
     8881 tttcaaacct attaacccaa aataaagtat ggcaaaaaat agagttactt agcggtattt
     8941 taatggctta tattgcgatg aaattaatta caagcagctt atagattaag tcatagagcg
     9001 ctcttgtcag gatttcagga taatagaaag ggccaatcag tgtgtcgcca attgacccag
     9061 tggaatgaca catagcaagt ccaacctcgc aaaataaata tctcatactc cactgattaa
     9121 tgtcaacatt tttaccatat ttgcacatca acattgttgt tactttttta ttcagttaaa
     9181 atggatcatt ttatatcaat cgggccatta tgttttacgg cgatacagta caagaaactc
     9241 gacagctatt ttttatcagc tggaataagt accagaataa aaaagaactt tctcccttgg
     9301 aaaaagaaat tgcccaagtg attcttgatc atccggaata ccataaagtc attgaacaaa
     9361 ttccatcttt tcctgaacat acttattatc ctgaattagg cgaaaccaat cccttccttc
     9421 atatggggct tcatcttgcc gttcgcgaac aagtagcgac cgataggcca caaggcatcc
     9481 gtactgttta caccaagtta atagaaaaat atcaggatcc catggctgtt gaacatttaa
     9541 tcatggatca attggcagaa tgcttatggc tttcccaaaa aaacaatagg ccgccagatg
     9601 aaaaccacta tttaattacc ttgcaaaatt tgtagcgtgt atcctggaaa tacccctgtt
     9661 ttcatctgta catggataaa aaaaagtata caatttttaa ctgggtatct taatgattat
     9721 cggttaatat gaacacttta atgatactat ccggcaaata tgacgaatca gaaacaaacc
     9781 acccattttg gttttaaatc agtagactgg aatgagaaag aaaagaaagt agcagaagta
     9841 tttcattctg ttgctaaaaa ttatgatcgt atgaatgatc tgatgtcctt gggaattcat
     9901 catctatgga aacgctatac cattgaatta agtcatgttc gacctgggca gagcgtattg
     9961 gatttggccg ggggcagcgg tgatttaacc cggttattat tgcaaaaagt gggcgactcc
    10021 ggacaagtta ttcttgccga catcaacgca gccatgctcc atgttggccg cgatcgcttg
    10081 cttgatgagg gattatttaa aaacattcgt tatgttcagg gtaatgcgca atgcctccct
    10141 tttgcggata acagttttca ttgcatcact atgggatttg gacttagaaa tgttactgat
    10201 aaagacgaag cgctgcaatc catgtacaga gtatgcaaac cgggtgggaa attaatggtg
    10261 cttgaatttt caacaccagt ttttcctgga cttaagcccg tttatgattg gtattcattt
    10321 aacattttgc caaaaatcgg aaaatttgtt gctaacgatg aagccagcta tcaatacctt
    10381 gcagaatcaa tcagaatgca tcctgatcag gaaacattaa aagcaatgat tgaacgggtt
    10441 ggatttgagg attgtcatta tcataattta agtggcggta tagtcgctct gcatatcgcc
    10501 tacaaatatt gagttgatta tgttaaaaga atactcgctg aaagcattac aaacagccat
    10561 caatcaggcg atgaagcttg atgagcaaat gccgcaaaaa cttcaaaaac tcgacggcaa
    10621 aacgcttgaa atggtcatta cccccttaaa tgttaatttt tacattcgct ttaaagggag
    10681 tgaaatgcaa ttgctccatc gcattgatgg gcgccctgat acaatcattc acagcaatcc
    10741 gataggattg attcgcttga gcttattacc cacatcgaaa gcccgctctt tatttaatga
    10801 caagatacgc atctcaggcg acattgaatt ggggcaaagc gtaaagaaac tatttgacga
    10861 aatagatatt gactgggaag ggcacctggc tcacttcaca ggtgatgtgg tggctcatca
    10921 aattggctct tttgtacgta aaggactgga atttaaaaat caattcagca cctcgatgca
    10981 acaaaacatc accgaatttc ttcaggaaga attacgcatt tgtccttcaa gaaatgaact
    11041 ggaagatttt tttgccgagg ttgatgaatt ggtgttaagt gttgatcgcc ttcaagccca
    11101 tatcaataat ttaatgagcg atgatgaagg caattaaacg attggataat tttattcagg
    11161 atctggatgg attatcattg catattgagc ggctggaagc tcgaaatcaa caaccgatga
    11221 gctgttatga aatcaattaa gcaacttatt cgtcttatac atatcaatta tattttagcc
    11281 aaaaatggtc tagataatgt tgttgtgtct atcaaactgt ttgctccttt acgttttata
    11341 gtgtatttaa acccatggaa ctggcttcgc aaggagaaat taacgcgcgg tgaagcgctg
    11401 cgcaaatcgc tggaggaact cggccccatc ttcattaaat tcggacaagc cctttccaca
    11461 cgccccgata tacttcctga agacatcgca aaagaattaa gtaaactgca agacaaagtt
    11521 cctccattcc ccagccatat cgccatgaac atcattgaac aggcctataa acagtctgcc
    11581 tatgatgttt ttgcccaatt tgatccgatc gccctggctt ccgcttccat ggcacaagta
    11641 catgcggcaa ccctgaagac aggggaaaat gtcgttgtaa aaatactaag gcccaatatg
    11701 cgccggctta tagaacaaga tttaagtatc atgtacacca tcgccgcatt ggctgaccgc
    11761 tattggcctg agggaaagcg cttcaaaccc aaagagatag tcaaggaatt tgaacatacc
    11821 ttactggatg aactggattt aatgagagaa gcggcaaatg ccgctcaatt gcgaagaaat
    11881 ttcaatcaat ctccgatgtt atatatacct gaaatctatt gggattattg ccatcataat
    11941 atcctggtca ttgaacgcat tcatggcata cccgtgaccg atatagccag tcttagagat
    12001 cacggcattg acattaaaaa actggccgag cgtggggtag aaattttctt tactcaagtc
    12061 ttccgggatt gtttttttca tgcagacatg cacccgggaa atatctttgt ctcctaccaa
    12121 aaccccaaag accctcagta tatttgtgtt gattttggca tcattgggac tctgacagat
    12181 aatgacaagc gttatctggc tgaaaacctg gtcgcttttt ttaaccgtga ctacaagcgc
    12241 gtagcggaat tacatgtgga gtcaggatgg gtatcgcgtg acacccctgt tgcagaattt
    12301 gaaagcagca taagaaccgt ttgcgaacct atttttgaaa agccattaaa agatatttcc
    12361 tttggacaag tggttttccg tttattccag gttgccagaa ggtttcatat ggaagtgcag
    12421 ccccaactga ttttgctgca aaaaaccctg ttggcgatag aaggtttggg cagacaactc
    12481 tatcctgaat tggatttatg ggctacagca aaaccattcc ttgaaaaatg ggtgcgggaa
    12541 caaatggggc ctaaagcatt cattaaacgc ttaaagcaaa atctgccctt ttttaccgag
    12601 caactccccc atatgcccaa actgattttt gatatattgg agatgaaaaa ggatcagttg
    12661 ttaacagtcc atgaactcac acgcttgcaa tctgaaaata acaatcagac catccaatgg
    12721 aagagtatgg gactgggtgt atttttctca tttttatcat taggcgtcat tagctatttt
    12781 gatttgctgg attataatca tctcacaacc atcacgatag ctggttctgt tttagctgga
    12841 atttttgtac tcatcaaccg caagataagg aactaacatg ggattaagtg gaataagtcc
    12901 gttatcactt ttattaattc tagccattat tatagccttg tttggcactt ccaaattaaa
    12961 aacaataggc tctgaccttg gtgaagcgat taagaatttc cgcaaagcca tgaatagtga
    13021 ggaaacaaat gacactcaaa aagacgatca taaaccatca tgagtcttgg tgagttatta
    13081 cttgttttca ttgtcgctat cattgtgttt gggccatcaa agcttcccat gctggcaacc
    13141 caccttggca tgctcgtacg aaaactcaat caattaaaag aacatacttc ttcattttgg
    13201 cagcaacaac tcaatgaaat tcagctgtat gaaaaccaac gcaaagcgga aaaggctgat
    13261 cagcaatatc agcagacaga ttcagaaaac caaaattctg accacaaaaa aaacacacgc
    13321 ccgagctaaa ctggaaacag cacatggcgt ttaactcgga caagacctgt gttattcact
    13381 ctgttgattt ggtgacgttg tagagtcggt ttgattaggt tgtacttcaa ccgattgaat
    13441 attagcaaga ttctgttgca atttatcaag atcggcttga gcagcataaa cctgaatttg
    13501 cgaatcatct tgaaaagtga taactccttt caccaaatta tgctctgtca tccattgcgt
    13561 atcatcagcg aatagtggtg ttgaaaacgc taaaacgatt gccaaaacgg atgaattgac
    13621 taatattttc ataacgcact ccttgcataa atcgatatcc cttatgcagt tgaaaaatat
    13681 tgtacattat aattataggc tatttttgtt gttaa
//
LOCUS       DACVWI010000081        13624 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.081, whole genome shotgun sequence.
ACCESSION   DACVWI010000081 DACVWI010000000
VERSION     DACVWI010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13624
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.081"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..471)
                     /locus_tag="JBH85_08445"
     CDS             complement(<1..471)
                     /locus_tag="JBH85_08445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946228.1"
                     /translation="MEKDRMAAQRHLYIFTLIGLLLGVVVDILIRYNNTTAFIYSVVT
                     IFGVLFALTYNNVNFSRLIGTSFLLAFFLSIPLFPLKMDYSMKDYFHFFTFFVGFPFF
                     IYVAHCFHYAYHHDNTWRVSYSSLFAGVWNTIPLLFIALVFSSLANLLIVLGSFV"
     gene            complement(617..1708)
                     /locus_tag="JBH85_08450"
     CDS             complement(617..1708)
                     /locus_tag="JBH85_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HAU0946229.1"
                     /translation="MFMKNLYIDPDITKASTISSEFYTSTEWFEITKEKIFSKTWQFC
                     ISTEELTTNRQLIPFTLLPGYLEEPLLFAKDELGTIRCLSNVCTHRGKILIEEPCVAH
                     KIKCSYHGRRFNFCGELLHMPEFELTKDFPSNNDNLSQISTGILEPFLFASLSPVVPF
                     HEVFAEIKERLFWLPMEKMRLDKEKCKDYVVKSHWALYCENYLEALHIPFVHPSLRKV
                     IDCNTYTTELFRYCNLQLALASPDEVSFDLPKGAQDYGKQVAAYYFWIFPNTMLNFYP
                     WGCSVNVVKPLSPELTQVSFLSFVLDESKFGKGAGGALDQVEQEDERVVESVQRGIKS
                     RYYDIGRFSPTKEQGTHHFQRLLCEFLND"
     gene            1910..2884
                     /locus_tag="JBH85_08455"
     CDS             1910..2884
                     /locus_tag="JBH85_08455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
                     /protein_id="HAU0946230.1"
                     /translation="MRYRRFLCLLNGMLLSSNVAAFSPSAPIFSPYVDLTINTHWDSQ
                     SQDMEPMDLISPAKKLGIKAYHLAFITDSGQCQPAWGAQQNYSVAKGWGKKQFDTLSR
                     EGVKLTVSFGGASGTDISYHCDKNQLINTFSQVANQYHANVLDFDIENGTANIPNLLQ
                     ALKLFQKEHPDVLLSFTLPVMPEGLTSVGKEIITSAATLGLHFNVNIMAMDYGPAYSG
                     DMGDYAISAATNLHQFLQEIYPDKKPEALWQMIEVTPMIGVNDVNTEQFTLSNAAQLK
                     QFAQKNLLGGLSMWSFNRDKPCADKWASPVCSGNNLQSHDYEFVKYFQ"
     gene            3134..4906
                     /gene="lem20"
                     /locus_tag="JBH85_08460"
     CDS             3134..4906
                     /gene="lem20"
                     /locus_tag="JBH85_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem20"
                     /protein_id="HAU0946231.1"
                     /translation="MKSKEERFNEWRQEKAKSEQAYIKTVPLVEEYIKSFDTLAELRN
                     DVANPNSEKIKKMDAHKRRTLGVLLYAKLKLDEVIEKISDSDSQEKDLLIELNNTLSK
                     AYDNPKSDAKNRVKILIETTEHLLNIEHHSYPQLAKELCADLYALLCIAKRSLKKNEI
                     LASWFIDVHEINKKLEELLAKTEEKVESLDKILSEKLNESLETSPKDRTIQEHFNERF
                     TEILSGDEKQRTKLDKLKMSLKEVAEGLSGIVELRKEKATIGEKIKKIEALLKTVEEN
                     DKKVTGRQYFLDLLASHKDHFNTLMSTEGGELKKQLAGKIEQLKNPDFYQTVSSTLLW
                     GASWATSLGTVIYRQITPQAVQDRVSAYAPATLDSEAKALLQELARQQLIELKKQQSL
                     KRDELVQRYSQLSSGSPELEKLIINATSDHLEQIAAATTETSKVLDGYDQIEIKLKDN
                     VEKLKGNQLTRKQLSDFIEKNDTWIVKLSNWLAENIHEIFKSDTARMIDKARKAQQKL
                     GEFERQYQTEIESEKAKIENNDSLSSEMKVFLKNQFEETKKTGGMEQKPQKNLSKETL
                     QKLFVSLLPEHEEISSGVIFSPFN"
     gene            4927..6522
                     /locus_tag="JBH85_08465"
     CDS             4927..6522
                     /locus_tag="JBH85_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HAU0946232.1"
                     /translation="MSQSVDQSQVIDRLNRYLKWHNMPVSMNEEGICNGLVTVYAKYV
                     LDGKEKRFFELLDQIVRMEADSAIESEINQFVYDVVLTLFPHQFNKKLSQANSMCALT
                     VNNKPLVSSFDFAIATQDKNWEEIFKNLALQEDEIARVSGTAHAVAVRRKNNKYIVYD
                     PNYSSGTKEFSNEHELISELHYNVFGYHNGFYIKGGLLGMMVSVIRYPDNKKPRAFPQ
                     VTQLYDRYLTKNNINDVAVSFHGGTFNTLEHAAMVSHAEVIKNLLEKGAKDNDHQAAG
                     NAVMYNNVEALKALLGKNRETELFQRLFHAALESGREEVYDALFSMKGALPFNSSVQA
                     IRAAAKGGNSVLLAKVMNYFKRNHTGFSDLEDAIFSAITSGSVQCVKLLVNQLNESKK
                     PLDDKKRMEYLLESIKQNQSYMVAYFLKDIPPEHLKTIYMSVSAVERTNLHILRQLQN
                     YGVPFSDMSKAVFEQKEHHFVGLKRILGIFLCKFTDFLKELLFNDRGIHCHRAEESGV
                     KKSFFAFPKKLVGVEQLQIPKLY"
     gene            6601..7524
                     /locus_tag="JBH85_08470"
     CDS             6601..7524
                     /locus_tag="JBH85_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family protein"
                     /protein_id="HAU0946233.1"
                     /translation="MNILLAGGSGLIGQELVRGMGEEHHYTVLGRDKDAIQKIFTTKA
                     SSLSWDELNTQDASRFDAVINLCGVNIAISRWTPKIKEEIISSRVQTTENLLHWILQQ
                     NAKPRFYCANAVGIYGLQENGDATDLTEDTAINWEHPKDYLSEVGIRWQQALQKAEEA
                     GLPVTSTRFGVVLKKGKGFLGKLYPSFICGLGSTIGDGRQYLSWIDSEDLVNAYRFLL
                     NHPEITGPVNVTSPNPCMQREFAKAFAKSLHRPLLLWTPAFIIHLLFGEMGDCLINHG
                     QKVKPKRLLEAGFEFKWPDIEKALKHQYSAI"
     gene            complement(7621..8073)
                     /locus_tag="JBH85_08475"
     CDS             complement(7621..8073)
                     /locus_tag="JBH85_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4949 domain-containing protein"
                     /protein_id="HAU0946234.1"
                     /translation="MRGIKNNSGVKNMMFQSKLATFFGALILAGSAFASQQGACPDIN
                     VIKAEGLPMAEEIGMNYYLAYNISDYSTSSVWGFFIAPIEADSEEGALEASNEVLSMM
                     NAPGVPHQQDEDIICSYDTGTPNLIAAAIKDGSQISPMKLKQYFKSAR"
     gene            complement(8314..9594)
                     /locus_tag="JBH85_08480"
     CDS             complement(8314..9594)
                     /locus_tag="JBH85_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylpolyamine aminohydrolase"
                     /protein_id="HAU0946235.1"
                     /translation="MDMAKDKGFFKKAKTGKNKSSATPYAEECAIQIPSEIDNEQMHR
                     MPAGGEEDQYLRIKHMSALIKKYGNLPIITTRETRLPDYWLELFTAIDEGDTPKAHAL
                     FHLLPQEDIILRALRAVHSEDYLYQLIKYCIQAKHFGFKQLNADLVVTPKTFEILIKD
                     CATTLFNPAKTHFSFGLPSHHAYTQMGSGFCLINKTAMLIKQAELSSVQPPRFVIIGT
                     DVNRDNGLCDILRHSFSHLSICHIDVFDSRVYPQQDFSYINNEFNSEGVDVGKNIHVW
                     HHNDLSYYAVDLSLTSRKSVGVHPALLFALEQFKASIREAKVKGQKIALYLPTGWDSH
                     EDETAYCGKFVKGRMLGKTAAHQFRFNDGDLSYFYESIFTLYNENKDCIDTIYWGLEG
                     GYDRTMYKRELTLLLQVIEKQLLPQDSNSHNMSC"
     gene            9788..10192
                     /locus_tag="JBH85_08485"
     CDS             9788..10192
                     /locus_tag="JBH85_08485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HAU0946236.1"
                     /translation="MVQHDIIKLPPKPYGAHLITNEVMQKITLRGTGLLHLFIQHTSA
                     ALALNENASPDVLIDLNHFFTQLVPEHQHYRHDIEGPDDMPAHIKSILCGSSLTIPFQ
                     ENKLLLGVWQGIYLMEFRKQAGARTIVASQLI"
     gene            10326..11375
                     /locus_tag="JBH85_08490"
     CDS             10326..11375
                     /locus_tag="JBH85_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YARHG domain-containing protein"
                     /protein_id="HAU0946237.1"
                     /translation="MTNDHYVSKKKMFAVVFCVFAPNEVLLANDTAVGGEGSLPIPVS
                     QPHIKMVSELIRISGKNLNEPQMNGSWHYNCNFTFKNTLNKEVTISMAFPFPINDGNS
                     EIALPAGQQTNVGQALVYDFLVTVNDKQVSAQRGNIAPDQNKGLYYEDAYFWKTTFPP
                     LATVNIHHDYSTGATYDVMGYHWVRYVLKTGALWQDSSIGHTRLEVIPNTPTRLCSEI
                     DQKADYLNPTPSGMSISGSRADRKYIWDLRHFQPQADLSLCLFTGISYVRYKVIYPWL
                     NSDDALSKLARLSNKELRFLRNTIYAQYGRQFQSPDLQEYFSKKWWYVPNPDYSDRML
                     NEEDKKLLSMINQAK"
     gene            complement(11536..12066)
                     /locus_tag="JBH85_08495"
     CDS             complement(11536..12066)
                     /locus_tag="JBH85_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HAU0946238.1"
                     /translation="MMAIFKNLVLTLVSSALLVTPCFSAGLTLESPAFASNAAIPQKF
                     TCSNLNYSPPLIWHDPNLGTQSYVLIVHDPDAPTGNWIHWVLFNIPAQVKQLTEGTTT
                     PAGATSGLNSWNTTGYSGPCPPSGTHRYYFTLYALDTYLSLGPEATAQDVVNAMKGDI
                     IDTAELVGHYSKNASQ"
     gene            12383..13396
                     /locus_tag="JBH85_08500"
     CDS             12383..13396
                     /locus_tag="JBH85_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HAU0946239.1"
                     /translation="MKAIGYYHSLPITDNKALMDLDVSVPKATGHDILVEIKAVAVNP
                     VDTKVRRNVQPEPHQPKILGWDASGVVTEIGSEVTMFKPGDEVWYAGDLTRPGSNCEF
                     HLVDERIAAKKPKSLSFQEAAALPLTSLTAWELLFDRLQLSAEDKGILLITGAAGGVG
                     SILVQLARQLTQLTIIGTGARPESIQWILDNGAHHVIDHTKDMKAQLQNLHYSEVDYV
                     ISLTHTDQHAKSLVEVLKPQGKFALIDDPQNLDIKLFKLKSISIHWEMMYTRSMFKTA
                     DMIKQHDILTEVARLVDAGKIKTTIAECLGLINADNLRRAHALLESGTSRGKIVLNGF
                     KSI"
BASE COUNT         4404 a         2358 c         2748 g         4114 t
ORIGIN      
        1 tacaaaagat cccaatacaa taagtaaatt ggccaatgag gaaaagacta gggcaataaa
       61 caaaagagga attgtattcc atactccagc aaataaactg ctgtaactta cccgccaggt
      121 gttgtcatga tgataagcgt aatggaaaca atgagcgacg tagataaaaa atggaaagcc
      181 aacaaaaaaa gtaaaaaaat ggaaatagtc tttcattgag tagtccattt tcaacggaaa
      241 caatggtatt gatagaaaga aagcgagtag gaagctggtt ccaatcagac gcgaaaaatt
      301 gacattgtta taagtaaggg caaataaaac accaaagata gtgacaacac tgtatataaa
      361 tgcagtcgta ttgttatagc gtatcagtat gtccactact acccctagaa gtaatccaat
      421 cagggtaaaa atataaaggt gtctttgagc agccatcctg tctttctcca caagggggtt
      481 atattcatga tttagggttt agtagaatgc cctaatcgtt atctaaaaat aattctaact
      541 cagttactta attgatctaa atcgtttatt aaaaatattt tttcgttcca agtctgagca
      601 tgtgacagat ctaatttcaa tcattaagaa actcacaaag tagtctttga aaatgatgag
      661 tgccctgttc ttttgttggg gagaaacgcc ctatatcata atagcgagat tttatccccc
      721 tttgcacaga ctccaccact ctttcatctt cttgttcaac ctggtcaagt gctccaccag
      781 cgcctttccc aaattttgat tcatcaagaa caaaagataa aaaggaaacc tgagttaact
      841 caggactaag tggtttgact acattcacag aacaacccca gggataaaaa ttaagcatcg
      901 tattggggaa tatccaaaag taataggcag caacttgttt gccataatct tgcgcccctt
      961 tgggtaaatc aaagctgact tcatcagggc ttgccaaagc caattgcaga ttacagtagc
     1021 ggaagagctc tgtggtgtag gtgttgcaat cgattacttt tcttagcgag ggatgtacaa
     1081 aagggatatg taacgcttca aggtaatttt cacagtataa ggcccaatgc gatttaacta
     1141 cataatcttt gcatttttct ttatccaggc gcattttttc catagggagc caaaacaacc
     1201 tttctttaat ttctgcaaaa acttcatgaa atgggacaac tggtgagagc gaagcaaaga
     1261 gaaaaggctc aagaataccc gttgaaattt gacttaggtt atcattgttt gatgggaaat
     1321 cttttgtgag ttcaaattca ggcatatgaa gtaattcgcc acaaaaatta aaccgacggc
     1381 catgataaga gcatttgatt ttatgcgcca cgcaaggctc ttcaatgaga attttacctc
     1441 gatgggtaca tacattactc aaacaacgaa ttgtacccaa ttcatctttt gcaaacagta
     1501 agggttcttc aagatatcca ggcagcaagg taaaaggaat taattgccta ttagttgtta
     1561 attcttcggt actgatacaa aactgccagg ttttactaaa tatcttttct tttgtaattt
     1621 caaaccattc cgttgatgta taaaattcag aagagattgt ggaagctttt gtaatatcag
     1681 gatctatata gagattcttc atgaacattt ccttaccgta aagagaaaaa cctgcaaaaa
     1741 gagaataaaa attttaacca tttctttcgg tgaagcgatg gttaaagtct gataaaaggt
     1801 agtgcaaacc tttgcgccct gtcaacttgt ttatttatta acaaaatgat tgattaattg
     1861 cataaatgat gtaaaaataa acacaacttg ggttttaagg aactattgaa tgcgatatag
     1921 acggttttta tgtttattga atggcatgtt attatccagt aatgttgcag cgttttcacc
     1981 ctctgcccct atattcagcc cttatgttga tttaacgatt aatactcatt gggactcgca
     2041 atcacaggat atggagccaa tggatttgat ttctccggca aaaaaactgg ggattaaagc
     2101 ttatcatttg gcttttatta cagacagtgg tcaatgccaa cctgcctggg gagcccagca
     2161 aaattacagt gtggcaaagg gatggggtaa aaaacagttc gatactctat caagagaggg
     2221 ggtgaaactc accgtttcat ttggcggagc gagtggtact gatatttcct atcattgtga
     2281 taaaaatcaa ttaattaata cgtttagtca agtggctaat caatatcatg cgaatgttct
     2341 ggattttgat atagaaaatg gaacagccaa tattcctaat ttgttgcagg ctttgaaatt
     2401 attccaaaag gagcatccgg atgttttgtt aagttttacc cttcctgtga tgcctgaggg
     2461 tttaacttct gttggaaaag agataatcac ctcagcggct actttaggcc ttcattttaa
     2521 tgtgaacata atggctatgg attatgggcc ggcttatagt ggagatatgg gggattatgc
     2581 gatatccgca gcaacgaatc tccatcaatt tctccaggaa atttatccgg ataaaaaacc
     2641 ggaggcttta tggcagatga ttgaagtaac gccaatgata ggtgtgaatg atgtgaatac
     2701 agagcaattt accttatcta atgcagctca attaaaacaa tttgcacaga aaaacctgct
     2761 ggggggattg tcaatgtggt ctttcaatcg ggataaacct tgtgctgaca aatgggcaag
     2821 tcctgtatgt agcggtaata atttgcagag tcatgattat gaatttgtga aatattttca
     2881 gtaatggaat taattcagga tttcctggtt ctgatgaaga agaaatggtt tgaatgaatt
     2941 atctatgtta tttttttgtc aagataaacc tggttttgat gaattaggtg atataatttt
     3001 cactatgata aattctacga aattcattac ttaatattta gataataata gatgcatata
     3061 ctggagttaa gatttagcgg gtatttctcc atttattgtt tggaagagtg ctaactggca
     3121 attagggtta attatgaaga gtaaagaaga acgatttaat gaatggcgcc aagaaaaggc
     3181 gaaatcagaa caggcatata ttaaaactgt tccattagtg gaagaataca ttaaatcatt
     3241 tgataccttg gctgagctca gaaatgatgt ggctaatcct aattctgaaa aaattaaaaa
     3301 aatggacgcc cataaaaggc gcactctggg tgttttactc tatgccaaat taaaactgga
     3361 tgaagtgata gaaaaaattt cggattctga tagccaggaa aaggatttat taattgagtt
     3421 aaataatact ctgagcaaag cgtatgataa tcccaaatcg gacgccaaaa acagagtaaa
     3481 aattttaata gaaacgacag aacacttatt gaatatcgaa catcactctt atccacaatt
     3541 ggctaaagaa ttatgcgcag atctatatgc tctattatgt attgcgaaga gatcgcttaa
     3601 gaaaaatgaa atactggcaa gctggttcat cgatgttcat gaaattaata aaaaactgga
     3661 agaattatta gcaaaaacag aagaaaaagt cgaaagtttg gacaaaatcc tgtcagaaaa
     3721 actcaatgaa tcacttgaga cttccccaaa agacagaacg atacaagaac attttaatga
     3781 gcgtttcacc gaaattttaa gtggggacga gaaacaaaga acaaaactgg ataagttaaa
     3841 aatgagcctt aaggaagtag ctgagggact atcaggtatt gtggagttaa gaaaagagaa
     3901 ggctacgatt ggtgaaaaaa ttaaaaaaat tgaagcttta ctgaaaacag tagaagaaaa
     3961 cgataaaaaa gttacaggaa gacaatattt tttagactta ctagccagcc ataaagacca
     4021 ttttaatact ctaatgagta ctgagggtgg ggagttaaaa aaacagttag cagggaaaat
     4081 agaacaactc aagaacccgg atttttatca aactgtttct tcgacccttt tatggggcgc
     4141 aagctgggct acttctttgg gtacagtcat ttatcgccag ataactcctc aagcagttca
     4201 ggatagagtt agcgcttatg ctcctgcaac actggatagt gaagcaaaag ctcttttgca
     4261 ggaattggca agacaacagt taattgagtt aaaaaaacaa caaagtctca aaagggatga
     4321 gttggttcag agatatagcc aactatcaag cggtagccct gagttggaaa aattgataat
     4381 caacgccact tcagaccatc ttgagcaaat tgctgcagca acaacagaaa caagcaaagt
     4441 tcttgatgga tatgatcaaa ttgagattaa actcaaagat aatgtagaaa aacttaaggg
     4501 aaatcagtta actcgaaagc aattatctga ttttattgaa aaaaatgaca cctggatagt
     4561 aaaattatcc aactggcttg cagaaaatat ccatgagata tttaagtctg atacggctcg
     4621 catgattgat aaggctagaa aagcacaaca aaagctggga gaatttgaaa gacaatatca
     4681 aacggaaatt gaaagtgaaa aagcaaaaat tgaaaataat gattcattgt cctcagagat
     4741 gaaagttttt ttaaaaaatc agtttgaaga aacaaaaaaa acaggtggaa tggagcagaa
     4801 accacagaaa aatctcagca aggaaactct tcagaaatta tttgttagcc tgttgcctga
     4861 acatgaagag atctcatctg gggtaatatt cagtccgttt aattaatcag ggattagagc
     4921 gatgatatga gtcaatcggt tgatcaaagt caagtcattg atcgattaaa tcggtatctc
     4981 aaatggcata atatgccagt tagcatgaat gaagaaggaa tttgcaatgg cttggttacc
     5041 gtgtacgcaa aatacgtact cgatggtaaa gaaaagcgct tttttgaatt gcttgatcag
     5101 atagtcagaa tggaggcaga ctcagcaata gagtctgaga taaatcagtt tgtctatgat
     5161 gtcgttctca ctttattccc gcatcaattt aataaaaaac taagtcaggc taattccatg
     5221 tgtgccttga cagtaaacaa taaacccttg gtttcttctt ttgattttgc aattgcaact
     5281 caagataaaa attgggagga aatctttaaa aatcttgctc tgcaagagga tgagattgct
     5341 cgtgttagcg gaacagcgca tgctgtagcc gtcaggagaa aaaataataa atacattgta
     5401 tacgatccta attactcgtc tggtactaag gagttctcca atgaacacga attgatttcc
     5461 gagttacatt acaatgtatt cgggtatcat aatggatttt atattaaggg tggtcttttg
     5521 gggatgatgg ttagtgtcat ccgctatccc gacaataaga agccaagagc ttttcctcaa
     5581 gtgactcagc tttatgatcg ttatttaacc aaaaacaata ttaatgacgt agctgtttca
     5641 tttcatggtg gaacatttaa tactttagag catgctgcaa tggttagtca tgcagaagta
     5701 ataaaaaatt tgcttgagaa aggagcaaaa gataatgatc atcaggctgc tggaaatgct
     5761 gttatgtaca acaatgtaga agcattaaaa gctttactgg gaaaaaatag agagacagaa
     5821 ctctttcaaa ggctatttca cgcggctttg gagagcggga gagaagaagt ttatgatgcc
     5881 ttgttttcca tgaaaggtgc cttgccattt aattcgtctg ttcaagccat tcgagctgca
     5941 gcaaaagggg gtaattctgt tctcttggcc aaggtaatga attattttaa aagaaatcat
     6001 actggatttt cagatcttga agacgccatt ttttctgcaa ttaccagtgg aagtgtccaa
     6061 tgtgtcaaat tacttgttaa ccaattaaat gaaagtaaaa aacctttaga tgataaaaaa
     6121 aggatggagt atttgcttga gtcaataaag caaaatcaat cttatatggt ggcttatttt
     6181 cttaaagata tcccaccgga acatttaaaa acaatctata tgagtgtctc tgctgttgag
     6241 agaacaaatc tgcatatttt acgtcagtta cagaattatg gagttccatt ttcagatatg
     6301 tcaaaggctg tttttgaaca aaaagagcac cattttgtag gtttaaaacg gatactaggt
     6361 atttttctgt gtaaattcac tgattttctt aaagaactct tattcaatga tcgcggaata
     6421 cattgccatc gagcagaaga gagtggagta aaaaaatcat tttttgcctt ccctaaaaaa
     6481 ctggttggag ttgaacaatt acaaatcccc aaactttatt gaggcacggt actaatgaca
     6541 aacagtagtc atcagtttat attaatgaaa taagatggcc taaaaggagc ttgattcatt
     6601 gtgaatatct tattggcagg aggctctgga ttaataggac aagagttagt tcgtggaatg
     6661 ggagaggagc accattatac tgtgctgggg cgtgataagg acgcaataca aaagattttt
     6721 acaacaaaag catcctcttt gtcctgggat gaattaaata cccaggatgc cagtcggttt
     6781 gacgctgtaa ttaatttatg tggcgtcaat attgccattt cacgatggac accaaaaata
     6841 aaagaagaaa taatcagttc gagagtgcaa acaacagaaa atttgcttca ttggattttg
     6901 cagcagaatg ccaaacctcg cttttattgc gccaatgcag ttgggattta tggtttacag
     6961 gaaaatggtg acgcaactga tttgactgaa gacacagcaa ttaattggga acacccaaag
     7021 gattacctaa gtgaagtggg aattcgttgg cagcaagcct tacaaaaggc agaggaggcg
     7081 ggccttcctg tgacttccac acgctttggc gttgttctaa aaaaggggaa ggggttttta
     7141 gggaagctct atcccagttt tatttgcgga ttaggaagta ctattgggga tggtcgccaa
     7201 tatctttcct ggatagacag tgaggatttg gtcaatgcct atcggttttt gttaaatcat
     7261 cctgaaatta ccgggcctgt gaatgtgacc tcaccaaatc catgcatgca aagagaattt
     7321 gctaaagctt ttgccaagtc tctgcatagg ccactattat tgtggactcc tgcttttata
     7381 attcatcttt tatttggtga aatgggtgat tgtttaatca atcacgggca aaaggtaaaa
     7441 cccaaacgac ttttggaagc tggttttgag tttaaatggc ctgacattga aaaggcatta
     7501 aagcaccagt attctgctat atagtaacag catttttaag aggatttcat gatttggagg
     7561 gatatttaaa ataccctgta agttactgaa tacttgacag ggtatttaaa ggggcactaa
     7621 ttaacgagcg ctcttaaagt attgttttaa tttcattgga gaaatttgag agccatcttt
     7681 gatagcagcg gcgattaaat taggagtgcc tgtgtcataa ctgcaaatga tgtcttcgtc
     7741 ttgttgatga ggaactccag gagcattcat catgcttaac acttcatttg atgcttccaa
     7801 agcgccttcc tcggaatctg cttcaattgg agcaatgaaa aagccccata cagaagaggt
     7861 gctgtaatca cttatattat aagccagata gtaattcatg ccaatttctt cagccatagg
     7921 caaaccttcc gccttgatta cattgatatc tgggcaagca ccttgttgag aagcaaaagc
     7981 agaaccggcg agaattaaag cgccaaaaaa agtcgctaat ttagattgaa acatcatgtt
     8041 ttttactcct gagttatttt taattccgcg caaagagtat catttgccta gaagatttac
     8101 aataatgttg taatttgaga ttggagggta aacggaaaac aaactggcct tattctcgga
     8161 ggtatgatca ttgattacta atgctatcgt ccagaaccag caatcaacac agtaaggtaa
     8221 atcgctaatc gtttttgaaa tcaataataa ctatttcatg gccaaaacag ttcgcgccat
     8281 cattactaaa attaaaattt gaaataataa ccattaacac gacatattat gcgagttgga
     8341 atcttgaggt agcaattgtt tctcaatgac ctgcaacagc agagtaagtt ctcttttata
     8401 catggttctg tcatatccac cttccaagcc ccaatagatg gtgtcaatgc agtctttgtt
     8461 ctcgttatac aaagtgaata tggattcata gaagtagctt agatcaccgt cattaaagcg
     8521 aaattgatga gcggcagttt tccccagcat ccggccttta acaaatttac cgcaatacgc
     8581 tgtttcatct tcatgagaat cccatccggt cgggaggtat aaagcaattt tttgcccttt
     8641 tactttcgcc tctctaatcg atgctttgaa ttgctctaaa gcaaaaagaa gcgcagggtg
     8701 cacacctact gattttctgg acgttaagct gagatccacc gcataataac ttaaatcatt
     8761 gtggtgccat acatggatgt ttttccctac atctactccc tcagaattga attcgttatt
     8821 aatgtaggaa aaatcttgtt ggggatatac tcttgaatca aacacatcaa tgtgacaaat
     8881 cgatagatgg gaaaatgagt gtcttaaaat gtcacatagg ccattgtcgc gattgacgtc
     8941 ggttcctata atgacaaatc taggtggttg aacagaactc aattcagcct gttttatcag
     9001 catggctgtt ttattgataa ggcaaaaacc gcttcccatt tgggtatagg catgatggct
     9061 tggtaaacca aaagaaaaat gggtttttgc cggattgaac agagttgttg cacaatcctt
     9121 gattaaaatt tcaaaggttt ttggggtaac gaccagatcg gcatttagtt gtttaaagcc
     9181 aaaatgtttc gcttgaatac aatatttaat gagttgataa agataatctt ctgaatgaac
     9241 agctcgtaat gctcgtaaaa taatatcctc ctgcggcagc agatgaaaaa gcgcatgggc
     9301 tttgggtgta tctccttcat ctatcgctgt gaataattct agccaatagt ctggtagcct
     9361 ggtttcccga gttgtaataa ttggtaaatt tccatatttt tttatcagtg ctgacatgtg
     9421 ctttatacgt aagtattgat cttcttcacc gcctgctggc atgcggtgca tttgctcatt
     9481 gtctatttca gatgggattt gaatggcaca ttcttcagcg tatggagtgg cagaactttt
     9541 gtttttcccc gtttttgctt ttttaaaaaa tcctttatcc ttggccatat ccattcctaa
     9601 atagcttggt taatttatta tattttagaa taggcgagtg agagatatta atccagagat
     9661 ttgttaagct catgactatc aagacaagag gcgctacttt atttataatg caaatagagt
     9721 ttatggacag aatttcattt tgttctgact cgacaattcc tccgttatcc aattaagtcg
     9781 agggtctatg gtacaacatg atataatcaa actgcctcca aaaccttatg gtgctcatct
     9841 aatcactaat gaagtgatgc aaaaaattac gttgaggggt accggattat tacatttatt
     9901 tattcagcat acctctgcgg cacttgcctt aaatgaaaat gcttcccctg atgtattgat
     9961 tgatctaaac catttcttta ctcaacttgt tcctgaacat cagcattatc gtcatgatat
    10021 agaggggcca gatgatatgc ccgcccatat taaatcaatt ttgtgtggct catctttaac
    10081 tattccattt caggaaaaca agttgctatt gggtgtttgg caaggcattt atttaatgga
    10141 attcagaaaa caagcaggag caagaacaat tgttgccagt caattgattt aggatcatag
    10201 ggcataactc tactcaccat tgaattaatc tgagcaatgc atgtatcttt ctgtgtttca
    10261 ttcacaggat aaatacctcc tgttcttaac tatactttat attattttga aaccaggaca
    10321 gcctcatgac gaatgatcat tacgtatcta aaaaaaagat gtttgctgtg gttttttgtg
    10381 tttttgcgcc taatgaggtt ttattagcta atgatactgc tgtaggtggg gagggatctt
    10441 tacccattcc tgtttctcag ccgcatataa aaatggtcag tgagttaatc aggatcagcg
    10501 gaaagaattt aaatgagcct cagatgaatg gttcctggca ttataattgt aatttcactt
    10561 ttaaaaatac attaaataaa gaagtcacca tttcaatggc ttttcccttt cctataaacg
    10621 atgggaattc agaaattgcc ctgccagcag gacagcagac taatgttggt caagcattgg
    10681 tttatgattt tctggttaca gtcaatgata agcaagtttc agcacagcgc ggtaatatag
    10741 ccccggatca gaataaaggt ctttactatg aggatgccta tttttggaaa accacctttc
    10801 cacccttggc aacagtcaat attcatcatg attattcgac gggagccact tatgatgtga
    10861 tggggtatca ttgggttcgt tatgttttaa aaacaggtgc tctttggcag gatagcagta
    10921 tcggacatac tcgacttgaa gtcattccca atacaccaac gcgtttatgc tctgagatag
    10981 atcaaaaggc agactacctc aatcctaccc catcagggat gagcatttca ggctcacgag
    11041 cggatagaaa atacatctgg gatttacggc attttcaacc ccaagcagat ttgtcacttt
    11101 gcttatttac ggggattagt tatgttcgct ataaggtgat ttatccttgg ttaaattcag
    11161 atgatgcatt aagcaaattg gccagattga gtaataaaga attacgattc ttacgaaata
    11221 ctatttatgc gcaatatggg cgtcaatttc agtctcctga tttacaagaa tattttagca
    11281 agaaatggtg gtatgtacca aatcctgact attctgaccg tatgctcaat gaagaagata
    11341 agaaattatt gtcaatgatt aatcaggcaa aataagctca atcgctgata ggctctttat
    11401 aataaatccc atatgaggcc tctaaattaa taaaagctga ttttgacagg tgactattac
    11461 cacgccggtc tatttttgtt ttatgccaat tcttgtgttt gttgcaggat cgcgtgagaa
    11521 agcatttttg caattttatt gagatgcatt cttactataa tgtcctacta attcagccgt
    11581 atctatgata tctcctttca tagcattcac cacatcctga gcagtggctt ctgggccaag
    11641 actaaggtaa gtgtctaaag catagagtgt aaaatagtaa cggtgtgtac ctgaaggcgg
    11701 gcagggacca ctgtaaccag tggtattcca gctatttaac ccactggttg cgccagcagg
    11761 agttgttgtc ccttctgtga gctgtttcac ttgagcaggg atattaaaca atacccaatg
    11821 tatccaatta cctgtaggag catcaggatc atgcactatt aacacataag attgggttcc
    11881 cagattggga tcatgccata ttagtggggg agaataattt aaattgctgc atgtgaattt
    11941 ttgaggaatt gctgcattcg atgcaaatgc cggactttcc aatgttaatc ctgcagaaaa
    12001 acacggtgta acaagtaatg cagagctgac taatgtcaag acaagatttt taaatatggc
    12061 catcactttc cctgcttcta ttgtttcctt acctgaaatt attgagagtc tagtctttta
    12121 tagactccct taaattatag attacgattg atacacttgt gatttgtttt tcatcaggat
    12181 ttttaccaaa agcaccaatt tttttgttta aaaacgttta attcggtcat ttattttatc
    12241 taaactccct cattaaaagc atttttcctc aacattggtt ttttttgtaa gtcccattca
    12301 tatgagaaat gccttgtgct gttgtttata aaattttcta aacctataat gaaactccag
    12361 tatttttaaa ggaataattt caatgaaagc aataggttac taccactctt tacccattac
    12421 agataataaa gcattgatgg acctggatgt ttctgtgccc aaagcaactg gccacgatat
    12481 tttagttgaa atcaaagctg ttgcagtgaa tcccgtagat accaaggtgc gtcgtaatgt
    12541 tcaaccagaa cctcatcagc ccaaaatatt aggctgggat gcttccgggg tagttactga
    12601 aattggatcg gaggtgacta tgtttaaacc aggtgatgaa gtgtggtatg ccggtgattt
    12661 aaccagacca gggtctaatt gtgaatttca ccttgttgac gaacgcatcg cagccaaaaa
    12721 accaaaatcg ttaagttttc aagaggctgc tgcattacct ttaaccagtt taacagcttg
    12781 ggagctttta tttgatagat tgcaattatc agcagaagat aaaggtattc tattaattac
    12841 tggagcggct gggggggttg gttctatttt ggtacaactg gcaaggcaac ttacccagtt
    12901 aactatcatc ggaacaggag cccgccctga atcaattcag tggatcctgg ataatggggc
    12961 tcaccatgtc attgatcaca ctaaagacat gaaggctcaa ttgcagaatt tacattattc
    13021 tgaagtggat tatgtgatca gtttgaccca taccgatcaa catgccaaat cgctagttga
    13081 ggtcctgaaa cctcaaggaa aatttgcttt gatagatgac cctcagaatt tggatattaa
    13141 attatttaaa ctaaaaagca tttctattca ctgggaaatg atgtacaccc gctctatgtt
    13201 taaaacagca gatatgataa agcaacatga tattttaaca gaggttgcca gattggtgga
    13261 tgccggtaaa atcaagacaa ctattgccga atgtctggga ttgatcaatg ctgacaattt
    13321 gagaagagca catgctttat tggaaagtgg cacttccaga ggcaagatcg ttttgaatgg
    13381 attcaagtca atttagttat tctcgaaaca gcgacgatgc ctggaatgaa acagatagag
    13441 tcacttgatt tttaaatgat tctctaaata gcctacgtgc ctcagcttgt ctgaggcatc
    13501 cggaaagtgc ttggttggta tcgctgacaa gcagcagtac ccggaggatc actcatttag
    13561 tttatctaaa ctcctcatta aaaacatttt ttgccttgac cttggagttt tacgcaaatc
    13621 tatt
//
LOCUS       DACVWI010000082        13499 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.082, whole genome shotgun sequence.
ACCESSION   DACVWI010000082 DACVWI010000000
VERSION     DACVWI010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13499
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.082"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            122..493
                     /locus_tag="JBH85_08505"
     CDS             122..493
                     /locus_tag="JBH85_08505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein convertase"
                     /protein_id="HAU0946240.1"
                     /translation="MIMNQQLNATKKDKLQVIDWLIENFPNAFFKKGNQVKPLKIGIF
                     DDLIDFYERLDTPPFSKKSLREALSYYSASPAYLSCQKPDTARVDIYGNEVDVVTPEQ
                     AKYAYQRYQERYGNKKSQELK"
     gene            complement(521..1213)
                     /gene="ubiG"
                     /locus_tag="JBH85_08510"
     CDS             complement(521..1213)
                     /gene="ubiG"
                     /locus_tag="JBH85_08510"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HAU0946241.1"
                     /translation="MNQIESTIAIEEVHKFAQLANDWWDTNGPLRTLHDINGARFEFI
                     SEHINLKGLRVLDVGCGGGILCESMAKAGAYVSGLDAEPEAIQIAKEHAHKNQLQIDY
                     FCNPIEEYEEQGFDVITCMELLEHVQNPELVLQHCRRLLKPNGLLFLSTISRTLKAYL
                     GAIIAAEYVLNLLPRQTHDYDKFIKPSELVKMARLYDLNLIDMKGLCYNPFLRKTTLV
                     SDVSINYIMVLQ"
     gene            complement(1200..1919)
                     /locus_tag="JBH85_08515"
     CDS             complement(1200..1919)
                     /locus_tag="JBH85_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HAU0946242.1"
                     /translation="MYENLLVGCHEEWKEILMKALNTMDSDYLKQIQEDSHWLPGLNQ
                     LFSAFSLPLSQTQYILLGESPYPRKISANGYAFWDNSVGLLWSSTGLSKEVNRATSLR
                     NWIKTLLIARGDLHGNTSQEAIAKINKSCLVQTAEDFFKGMMKKGILLLNASLIYSKG
                     KVPYHARHWKPFMQNLFEQLAIRKPDVQLILFGKIAEKIPANKLLIGLVSEHPYNVSF
                     ITNQRVIEFFKPMDLLSYESN"
     gene            2184..3866
                     /locus_tag="JBH85_08520"
     CDS             2184..3866
                     /locus_tag="JBH85_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinectin 1"
                     /protein_id="HAU0946243.1"
                     /translation="MIMFLANCNIEELVTEHIKQFLADEELSFSGLKDLILSKAPIPW
                     IHSSVTATLLKSRDSDKTEVKKNLEQQSYKAQLAEDKIQKEQDDAEALKDKKLKEVLT
                     RELNHIPTQISEQQTELRLLHYKLERLFESQAKVDVIQHPDSPMKKIKPSSSHSASIE
                     RLQRSINEREIKIQSLFEQEVNNKIKLNEIEKRASVRSQHHTKRVKRAQARIGYNSTG
                     EDILSTLSGKNQSILLRSIQKQHHALEKKCSDLIQEADQINYPLFLEELQKYLNKKKH
                     TLSSQEVDALKSVIKYIKQHLEFEHEVINTQSSLHIKKQSISSQIVKLRELQNKLKTL
                     KNNNPNLTAANEELVSRNLELTAMKEHHADLRHRLGTPALLLFGLTFLFSIPLILTIS
                     GVIPFFIAPALLYILVSAPPTILLLSTLGVGIAAIVFSFKMHSNESAIKSNLQTIETN
                     SNQMSRNSQNLKSLETLTIPTLDMQIKKDENLRDQLMLSLQKQQRQAAQAFQKAKEVE
                     CLSYATSSLLNSGNTQSSDPSLSTHSEESDEGLNDSNDSLQALEEETVNEIA"
     gene            4002..5642
                     /gene="ppeB"
                     /locus_tag="JBH85_08525"
     CDS             4002..5642
                     /gene="ppeB"
                     /locus_tag="JBH85_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PpeB"
                     /protein_id="HAU0946244.1"
                     /translation="MSLATYDVKQELVKLTQNFFSIDHQFSELKNLLTDKKTIPWIHN
                     QIVDQLSQIKKSDEIAMIARLEKSAYEQQMKEDDDEKNRDVEELRQDLLRRNDLTRQL
                     EILRVRKEQYERELLIRNTVPHVHTHPDTPVIHQHPSQPISAPLLNPNNHVHTHLEAT
                     LSSQDIELSVRKINRRISEINKELEILDSRNNAREIRRGDREKRLQARLNYVQKTAGV
                     VNTLSPDNQKKLLSNIEKEKKSLTQQHSSLLLKADQLNYSIFLQQFELSLQSMQRPFQ
                     EADALKAIVKRMKEHLNYKEKAASIQSRLDNTVLTIGENLRRLTRLNTQLSSLQLANP
                     DLTRRNERLEEQNRELLESYNSHIKTRNKLFFPTLVITGLSLLFSIPLILTLTGIIPY
                     AIAPAVLLTLVIAPPALLLLAGLGVGIATIIYAVKAYFNNSTIESNQETIESNRRQMG
                     ANQKEIYTLENQTIPNLKKELLENEEIKNRLTDELQYIENLAEQALKQANEVEPYVYS
                     AMPFFNPEVVVHQHPSVGNGIVTPSAPPIDPLYPAVRH"
     gene            complement(5729..7024)
                     /locus_tag="JBH85_08530"
     CDS             complement(5729..7024)
                     /locus_tag="JBH85_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HAU0946245.1"
                     /translation="MGSRHSCYSYGIVMFALVDCNNFYVSCERLFKPALANKPILVLS
                     NNDGCVIARSNEVKALGVQMGVPYFAVKALCKQHKVHVFSSNYTLYADMSRRVMSVLE
                     DNWPAIEIYSIDEAFLDLNTLPQSEHDEFCRKLQKIVLRHTGIPVSIGIGATKTLAKL
                     ANHIAKKELRTPVFNIENQYHWLAKIVVGEVWGIGRQWGKKLVQQGIYTAHDLAGMDL
                     QLIKKLFSVVLQRTVLELRGVSCGSLQDFESRKSIISSKSFGSMQTEYSALAQAISSH
                     CARAWEKLRHQKLMACHLSIFIKTNQFRLDLPQYQQTIGFKLINPTDDLRHLIRCAKL
                     CLRKIFRSGFHYQKVGVYLGDLIEKNCLQLDLFNQVSEKELNQTERLMSVLDEINTKY
                     GRHTLRLAAEGHVKPWAMRAQSRSPRYTTSWSELPVVII"
     gene            complement(6985..7539)
                     /gene="umuD"
                     /locus_tag="JBH85_08535"
     CDS             complement(6985..7539)
                     /gene="umuD"
                     /locus_tag="JBH85_08535"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HAU0946246.1"
                     /translation="MILNSSLGEYMSHGGARAGAGRPRGQGKYGESTKSVRIPESRIQ
                     DVMKYLQGEKEFPAIPLYTSSVRAGFPSPGDDYIESMLDLNEYLIKHPASTFFVRASG
                     ESMINAGIYSGDILIVDRGIEATHGKIVIVALNGELTVKRLSRQHGQVKLLAENPDFP
                     PIDITEEYDMVIWGVVTHVIHTVL"
     gene            7675..8898
                     /locus_tag="JBH85_08540"
     CDS             7675..8898
                     /locus_tag="JBH85_08540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HAU0946247.1"
                     /translation="MVKLYKEIINLIDNHQATMVEQLHQFCEINSGTTNLTGLAIMAE
                     TLCSAFKPIADTTELITLPPLSVIDMTGNTVMQSCGDVLFISKRPHLKRRILLSGHMD
                     TVYSASNPFQKLSYLDANQINGPGVADMKGGLIVILHALAAFENTRFAEDMGWDVLIN
                     SDEEIGSPTSGSLFNKLAHRYQAALVYEPAMTPNGTLAKNRKGSGKLTLVATGRAAHA
                     GRAFDEGRNAICYLAEAITAVHALNGQKNGVTINVGKIAGGEALNVVPDKAVAQLDIR
                     ISLPEDEIWVRNELNKIIKQLERPDYSLNVHGTFGRPVKRICAGTERLFHRIQKIGEA
                     LGLTIDWKDSGGCCDGNNLAHYGLPVLDTLGVRGGNIHSSDEYILLDSLSERAALSAL
                     LLIDLAQGGLEDLIK"
     gene            8895..9938
                     /locus_tag="JBH85_08545"
     CDS             8895..9938
                     /locus_tag="JBH85_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HAU0946248.1"
                     /translation="MMLFRSARDSDLDAIHQLAEISGVGMTTLPKDKELLKKRLEWSC
                     ESYQRNVTNPGCEYYFFVLEEQKNNTIVGTSAIEARTGYEIPFYSYKLSKRTRVCHTL
                     NIRSDYEVLSLVNDNQGRTEICTLFLHPDYRKNNNGLLLSKGRFLFMAQYPHRFAPIV
                     IAEMRGISDDKGNSPFWDNVGANFFHMPFVEADRLTLATNKQFIADLMPRNPIYVKLL
                     SPEAQAVIGKPHQSTIPAMNILLKEGFRYNNYVDIFDAGPTIESPLLEIKTISLSRIM
                     VIKNISDEASSSNRYLLANTQMDFRATISHAVFNERENTCIISKETAKLLDVKQGDSL
                     RISPIRTEDTPPL"
     gene            9949..11439
                     /gene="astD"
                     /locus_tag="JBH85_08550"
     CDS             9949..11439
                     /gene="astD"
                     /locus_tag="JBH85_08550"
                     /EC_number="1.2.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
                     /protein_id="HAU0946249.1"
                     /translation="MMSKLQIIQSKGQYINGEWIKGNGLILESTNPASGTLLWQGNNA
                     TDEEIANACYVAHRALKSWANTSFEERARYTKAFVEQVEKNREQLARLISLETGKPLW
                     ESQTEVSSVIGKVNLSIQAYQERTWPKQTETAEANACLRFKPHGIVVVLGAFNFPAHL
                     SNGHIVPALLAGNTVLYKPSEHTPAVAELIIQCWHDSGLPPGVINCLQGNANCGNTLL
                     SQDIQGVYFTGSYATGLRIHQQFCNRPEVILALEMGGNNPLVIDEVKDIDAAVYHTIL
                     STMITAGQRCTCARRIIIPDSQTGDLFLERFAKACKLMRIGSFDSQPEPFIGPVISHV
                     QALKHLHAQKQLIEMGGEIILPMSLLLEYTGLVSPGIIDMTRAKNPPDEEIFAPFAQI
                     YRYNHFDEAIQLANQTRYGLSAGLLSDNKDHYQQFYQNIRAGLINWNRPTTGAASSLP
                     FGGVGCSGNHRPSAYFAADYCAYPVASMEQPLLTTPVQRLPGLVLE"
     gene            11445..12791
                     /gene="astB"
                     /locus_tag="JBH85_08555"
     CDS             11445..12791
                     /gene="astB"
                     /locus_tag="JBH85_08555"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HAU0946250.1"
                     /translation="MNVYELNMDGLVGQTHHYAGLSSGNIASTNNALSISNPQAAARQ
                     GLEKMRQLYNMGLKQGLLPPHQRPNLNLLYQLGFKGTPSEQINKAYKTAPELLSACYS
                     ASSMWTANAATVSASVDTEDNKVHFTAANLISNLHRHQEADFSKKLLEFIFSNSDYFN
                     HHPLLPKSMGTSDEGAANHNRLCQSHAHSGINLFVYGKKVLGNHQFEQSPIKYPARQT
                     KEASEAIARNHLLNPERVIFACQNPLAIDQGVFHNDVISVANEHVFLVHEEAFYNQAY
                     VLDQLREKADFPLVIIQISKEQISVSEAVDTYLFNSQLITLPDQKNMILIAPAECQAN
                     LKVKTCIDGLVADPQNPINSVYYLDLKQSMRNGGGPACLRLRVPLNDYELKAMHQGIL
                     IDNDLLDILDKWVLKYYRTELKIPDLADPQLLYECLDALDELTQILKLGSIYPFQS"
     gene            12788..>13499
                     /locus_tag="JBH85_08560"
     CDS             12788..>13499
                     /locus_tag="JBH85_08560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946251.1"
                     /translation="MSIRVMWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVI
                     NRYIPRRPGLHYLQILTLMARKFPNDCCLLGLGGAGIAHLLGAQKTIRSIVAVESSEE
                     VIQIAKKFFMTDLIPHFTITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFF
                     IHCKKQLTDDGFLAVNLANSQEQWALVQLIKKQFPSNIIIPIKKCANIVVIASKNDNK
                     DLFIKQVRNTNEIKKITWV"
BASE COUNT         4400 a         2745 c         2472 g         3882 t
ORIGIN      
        1 aattgagaaa tttcttacat caattacagc ttaaattacg tcattttatc ttttagagca
       61 atatgctgct tgattatgtc ataagatatg gtagtttatt tacgatgaaa tgtagcgggg
      121 tatgattatg aaccaacaac taaatgcaac caagaaagat aagcttcaag taatcgattg
      181 gcttattgaa aattttccta atgcattttt taaaaaagga aaccaggtca aaccgctcaa
      241 aattggaata tttgatgatc taattgattt ttatgagcga ctggatactc cgccttttag
      301 taaaaaatcg ttaagagaag cattaagcta ttacagtgct tctccagctt acttaagctg
      361 tcaaaaacct gatacagcac gtgtagatat ttatggtaat gaagtcgatg tagttacgcc
      421 agagcaggcc aagtatgctt atcagcgtta tcaggagcgc tatggcaata aaaaaagcca
      481 agagttaaaa tagcgcggaa aagccacatt tggatttgtt ttattgtagg accataatgt
      541 aattaatgct tacatcagaa accagagtgg tcttcctaag gaaaggatta tagcataggc
      601 ctttcatatc aatgagattt aaatcgtaaa ggcgtgccat tttaactaac tcactgggtt
      661 taatgaattt atcataatcg tgtgtttgcc tgggtaacaa attaagcaca tactccgcag
      721 caataatagc gccgagataa gcttttaacg ttctgctaat agttgataaa aataatagcc
      781 catttggttt taataaacgc ctgcaatgtt gtaaaaccaa ctcagggttt tgtacgtgtt
      841 ccaataactc catacaagtt attacatcaa aaccttgctc ctcatactct tcaataggat
      901 tgcaaaaata atcaatctgc aactggtttt tatgagcatg ttctttggca atttgaatag
      961 cttctggttc tgcatctaat ccactcacat aagctcctgc cttggccata gattcacaga
     1021 gtatcccgcc accgcaaccg acatccaaca ccctcagccc ctttagatta atgtgctctg
     1081 aaataaactc aaaacgagcg ccattgatat catgcaaagt tctgagagga ccattagtat
     1141 cccaccaatc atttgcaagt tgggcaaatt tatgtacttc ttcaatagca atagtcgatt
     1201 caatttgatt cataagacaa taaatccatt ggtttaaaga attctataac acgttgatta
     1261 gtaataaagc ttacattata tgggtgttct gaaaccagtc ctatcaataa tttatttgcg
     1321 ggtattttct cagcaatttt accaaataag attaattgca catcaggctt cctgatagcc
     1381 aattgctcaa ataaattttg cataaatggc ttccaatgac gcgcgtgata cggaacctta
     1441 cctttactgt atatcaggga agcattcaat aataaaattc cctttttcat cattccttta
     1501 aaaaaatctt ccgcagtttg taccagacat gatttattta tcttggcgat tgcttcttgc
     1561 gaggtatttc catgcaaatc accccgagcg atcaataacg ttttaatcca gttgcgtagt
     1621 gaggttgctc gattaacttc cttacttagc cctgtggagc tccacaataa acctacagag
     1681 ttatcccaaa aagcataccc attagcagaa attttgcgtg gatatgggga ctcgcctaaa
     1741 agaatatatt gtgtctggct caaaggcagg ctaaaagcag aaaacagttg atttagccca
     1801 ggtaaccaat ggctatcctc ttgtatttgt tttaagtaat cactatccat tgtattcaat
     1861 gctttcatca gaatctcttt ccattcctca tggcatccaa ccaataaatt ctcatacatc
     1921 ttaattttta cccttccgtc atgataatta aattttcaaa ttgaggtatt ttgataatta
     1981 cctatgtttt taaaccaggt tttcagccac tttaacacta ttcttagacc atgagaaatt
     2041 gtcttatttt aacatctgga aataaacccc acgttggcca atagcttatc tgttgattgc
     2101 agcgattttc ttgccatatc aatcgtggtg tgttgcctga atattcaaat tacactaaca
     2161 tcatttaaaa atgataatct ggagtgatta tgtttttggc caactgcaat atcgaggaat
     2221 tagttacaga acatataaaa caatttctag cggatgaaga gttgtctttc tctggcttaa
     2281 aagatttaat tctgagtaaa gccccaattc cctggattca ctcctctgta acagccactc
     2341 tgcttaaatc cagagactcc gataaaacag aagtaaaaaa aaaccttgaa caacaatctt
     2401 ataaagctca actggctgaa gacaagattc aaaaagagca ggatgatgct gaagcattaa
     2461 aagataaaaa attaaaggaa gttttaactc gtgaattaaa ccacatccca actcaaatca
     2521 gtgaacagca aacggaactc agattacttc attataaact agagcgactc tttgaaagcc
     2581 aagctaaagt cgatgtgatt caacatcctg attctcctat gaaaaagata aagccgtcct
     2641 ccagtcactc tgcgtcgatt gagcgcctgc aaagatctat taatgagcgt gagattaaaa
     2701 ttcaatcact ttttgaacag gaagttaaca acaagataaa attaaacgaa attgaaaagc
     2761 gtgccagtgt acgctcacaa catcacacta aaagggttaa acgcgctcag gcaagaattg
     2821 gatacaatag tactggagag gatattctca gtacattatc agggaaaaat caatccattt
     2881 tgttgcgcag tattcaaaaa caacatcatg ctcttgaaaa aaaatgcagt gatctcattc
     2941 aggaagctga tcagattaat tacccattat ttcttgagga acttcaaaag tatttaaata
     3001 aaaaaaagca tactttatct tctcaagagg tcgatgcatt aaagtctgtt ataaaatata
     3061 taaagcaaca cttggaattt gagcatgagg taatcaatac acaatccagt ctccatatta
     3121 aaaagcaatc catcagttcc cagattgtaa aattacgaga attacaaaat aaactaaaaa
     3181 ccttaaaaaa caataacccc aatttgacag cggcaaatga agaattagtt tcacgtaatt
     3241 tggaattaac ggccatgaaa gagcatcatg ctgacctacg tcatcgcttg ggcacacccg
     3301 cattactttt atttggatta acttttctat tttcaattcc tcttatttta accataagcg
     3361 gagtaattcc ttttttcatt gcgcctgcgt tgctttatat tttggtctca gcgcctccaa
     3421 ccatcttgct gctatcaact cttggtgttg gcatagcagc tatcgttttc agcttcaaaa
     3481 tgcattccaa tgaatcagct attaaatcca atttgcaaac gattgaaaca aactctaatc
     3541 aaatgagccg aaattcccaa aatttaaaat cattggaaac gcttaccatc cccactctgg
     3601 atatgcaaat caaaaaagat gaaaatttaa gagatcaatt aatgctttct ttacaaaaac
     3661 agcaacgtca agctgcccag gcattccaga aagcaaaaga ggtagagtgc ctatcctatg
     3721 ctacctcttc acttttaaat tccggcaata cccaatccag tgatccatca ttatccacgc
     3781 attcagaaga gagcgacgaa gggctaaatg actcgaatga ctctctgcaa gcgctggaag
     3841 aagaaacagt taatgagata gcgtaaattg cctttctgtc aataaaattt caatggagca
     3901 agactgagta ttaaccccct gtaataaaac tgctagtccc aatattgata aattagtctt
     3961 tatgatctaa aatgcaacaa cttgattatt gggagtaatc tatgtcactt gctacttatg
     4021 atgtaaaaca ggaactcgtc aaacttaccc agaatttctt ctctattgat catcaatttt
     4081 ctgaattaaa aaacttatta accgataaaa aaaccattcc atggattcat aatcaaatag
     4141 ttgatcagtt atctcaaatt aaaaaatcag acgaaatagc tatgattgcg cggttagaaa
     4201 aaagcgctta cgaacaacaa atgaaagaag atgacgatga aaaaaatcgg gatgttgaag
     4261 agttacgcca agatcttctc cgaaggaatg atttgacaag acaactcgaa atcttgcgag
     4321 tccgcaaaga gcaatatgaa agagagttgc tcatccgcaa tacagtaccc catgtccata
     4381 ctcatccgga cactccggta attcatcaac atccttctca accaatatct gcacccttgc
     4441 taaaccctaa taatcatgta cacactcatc ttgaagccac tttaagtagc caggatattg
     4501 agctgagtgt tcggaagatt aacagaagaa tttcagagat aaataaagag ttggaaattc
     4561 tcgactccag aaataatgca agagaaattc gcagaggcga tagagaaaaa cgccttcaag
     4621 cacgccttaa ttatgttcaa aaaacagcag gagttgtcaa caccctatct cctgacaatc
     4681 agaaaaaact gttatccaat attgagaaag aaaaaaaatc actcacacaa caacattcct
     4741 ccttgcttct gaaagcagat caattaaatt actctatttt tcttcagcaa tttgagctct
     4801 ctttacaatc tatgcaacgt ccttttcaag aagcagacgc attgaaagct attgtaaaaa
     4861 gaatgaaaga gcatttgaat tacaaagaaa aagcggcatc gattcaatcc cgattagata
     4921 atacagtgct tactattggt gaaaatttaa gaagattaac gcgacttaat actcaattga
     4981 gttccttgca gcttgctaat cctgatttaa caaggaggaa tgagcgcctg gaggaacaaa
     5041 acagagagct ccttgaatcg tataatagcc atataaaaac acgaaataaa ctgttttttc
     5101 caactctcgt tataacagga ttatccttgc tcttttctat tccattgata ttaactctaa
     5161 ctggaatcat cccctatgct attgcaccag ctgtattgtt aactttggtt attgctcccc
     5221 ctgcattgtt attgcttgct ggacttggtg tcggtattgc cacaatcatt tatgctgtga
     5281 aagcttactt caataattca acgattgaat caaaccagga aacaatagag agtaataggc
     5341 ggcaaatggg agcaaaccaa aaggaaattt acactctgga aaatcaaaca attcccaatc
     5401 ttaaaaaaga attgttagag aacgaagaaa ttaaaaatcg cttaactgat gaattacagt
     5461 atatcgaaaa cctggccgag caagcattaa aacaagcaaa cgaagtagag ccatatgtct
     5521 actcagctat gcctttcttt aaccccgagg ttgttgttca tcaacatcct tctgtaggta
     5581 atggtatagt aactcctagc gcacccccga tcgatcccct ctatccagcc gtccggcatt
     5641 aatttccagc ctgggttatt aacacaggct atcatccggg atgacttaag ttgatttccc
     5701 ggatgacatt atagctatca gtttctcttt aaataattac cacaggcaat tcagaccagg
     5761 aagttgtata gcgaggagaa cgggactgcg cccgcatagc ccatggcttc acatgccctt
     5821 ctgctgccaa acgcaaggta tggcggccat atttcgtgtt gatttcatct aataccgaca
     5881 tcaatcgctc tgtctgattc aattctttct ctgaaacctg gttaaacaaa tctaactgca
     5941 aacagttttt ttcaattaaa tctcctaaat aaacgcctac cttttggtaa tggaatccag
     6001 agcgaaatat tttacgcagg cacaatttgg cacaacgaat caaatgtcgc agatcatcag
     6061 ttggattaat cagcttaaac cctatagttt gctgatattg tggcaaatcc aaacgaaatt
     6121 gattggtttt gataaatatg gaaagatggc atgccatcaa tttttgatga cgtaactttt
     6181 cccaagctct ggcacaatgg ctgctgatgg cctgagcaag agcagaatac tctgtttgca
     6241 tagaaccaaa ggatttggaa gatattatgc tttttcttga ctcaaaatcc tgtaaactgc
     6301 cacatgaaac cccacgcaac tcaagcactg ttcgttgcaa tacaacacta aataattttt
     6361 taattaattg caaatccata ccagccaagt catgagctgt ataaatcccc tgttgtacta
     6421 actttttacc ccattgccgt cctatccccc atacctcgcc aacaactatt ttagctagcc
     6481 aatgatattg attttcaatg ttaaatacag gggttcttaa ttcctttttc gcaatatggt
     6541 ttgcgagttt agccagggtt ttggttgccc ctatgcctat ggatacggga ataccggtat
     6601 ggcgcaaaac aattttttgt aacttgcggc aaaactcatc atgttcagat tggggcaaag
     6661 tattcaaatc aagaaaagct tcatcaatgg agtaaatctc tattgctggc caattgtctt
     6721 caagaactga cataacccgg cgtgacatat cagcatacaa tgtgtaattg gatgaaaaca
     6781 catgcacttt atgctgctta cataatgctt tgactgcaaa ataaggcact cccatttgaa
     6841 cacccaaagc ttttacttca ttagatcgcg caatcacaca accatcatta ttagacaaga
     6901 ccaaaatggg tttattcgct aaggctggtt taaataaacg ctcacacgag acataaaaat
     6961 tattacaatc gaccagcgca aacatcacaa taccgtatga ataacatgag tgacgactcc
     7021 ccaaatcacc atatcgtatt cctctgtaat atctatggga ggaaaatcag ggttttcagc
     7081 cagcaactta acttgcccat gttgacggga taaacgtttt actgtcaatt cgccattcag
     7141 ggcaacgatt acaatttttc catgagtagc ctctatgcca cgatcaacga ttaaaatatc
     7201 accggagtaa ataccggcat ttatcatgga ttctccagaa gctcgtacaa aaaatgtgga
     7261 tgcaggatgc ttgatcaggt actcattcaa atccagcatg gattcaatat agtcatcacc
     7321 cggagaagga aaaccagctc ttacagaact ggtatataaa ggaatcgctg ggaactcctt
     7381 ttctccttga agatatttca tcacatcctg tatacgagat tcaggtatac ggactgattt
     7441 ggttgattct ccatatttac cttgcccacg agggcgccca gcgcctgctc gtgcaccacc
     7501 atgagacata tactccccta aacttgaatt tagaatcaaa attcaagttt aattttaaag
     7561 tagcccattg taaagttccg acaataatga gagtttcata tgacgactaa actgaattga
     7621 cgccaatact caaattacgt tattgttggg gatttagtgt aagactaaag agccatggtt
     7681 aaattatata aggaaataat caatttaata gataatcacc aggcaactat ggtggagcaa
     7741 ctccatcaat tttgtgaaat caattctgga acaactaact tgacaggatt ggccatcatg
     7801 gctgaaacgt tgtgttcagc tttcaaaccg atcgctgata ccacagaatt aataacatta
     7861 ccgcctttgt ctgtgattga catgactgga aacacagtta tgcaatcctg tggggatgta
     7921 ttgttcatta gcaaacgtcc tcatttaaaa cgccgaattc tgctaagtgg gcatatggat
     7981 acggtttatt ccgccagcaa cccttttcaa aaattaagtt acctggatgc taatcagatc
     8041 aatggcccgg gggttgctga tatgaaaggc gggctaatcg tcatcttgca cgcattagcg
     8101 gcctttgaaa acaccagatt tgcggaagat atgggttggg atgtgttaat taattcagat
     8161 gaagaaattg gttcacctac atcaggttcc ttattcaata aattggcaca tcgctatcag
     8221 gccgctttgg tttatgaacc agcaatgaca cctaatggta ctttggcaaa aaaccgcaaa
     8281 ggcagtggaa aactaacact ggtagcaaca ggaagagctg cccatgctgg ccgggcattt
     8341 gatgaaggaa ggaacgccat atgctatctt gctgaagcaa ttacggctgt tcatgcctta
     8401 aatgggcaaa aaaatggagt aacaatcaat gtaggcaaaa tagctggcgg agaagcgctg
     8461 aatgttgttc ctgataaggc agtagctcag ttggatatcc gaattagtct gccagaagat
     8521 gaaatttggg taagaaatga attaaataaa atcatcaaac aattagagcg acctgattat
     8581 tccctaaatg tgcatggcac ctttggacgg cctgtgaagc gtatctgcgc agggacagaa
     8641 cgactttttc atcggattca aaaaattgga gaggcgcttg gcttaactat tgactggaaa
     8701 gacagtggag gttgttgcga cggtaataat ttggctcact atggcttgcc tgttctggat
     8761 actctaggtg ttcggggagg caatatacac agttcagatg aatatatatt gcttgatagc
     8821 ttatcagagc gcgccgcact tagcgcgctt cttctgatag atttggcaca gggtggttta
     8881 gaggatctaa taaaatgatg ttatttcgta gcgctcgcga ctctgacttg gatgcgatcc
     8941 atcaactggc agaaatcagt ggtgttggga tgacaacgct ccctaaagat aaagaattat
     9001 taaaaaaacg cttggaatgg tcttgcgaat cctatcaaag aaatgtcact aaccctggct
     9061 gtgaatatta tttttttgtc ctggaagaac aaaaaaataa tacaattgtc ggtacctccg
     9121 ctatagaagc aagaacaggt tatgaaatac ctttttattc ttataaactc tctaaaagaa
     9181 ccagagtctg tcacacactc aacatacgca gtgattatga agtattaagt ttagtcaatg
     9241 acaatcaagg tcgcacagaa atatgtactc tgtttcttca tcctgattac agaaaaaata
     9301 acaatggcct attgctttcg aaaggacgct ttttatttat ggcacaatat cctcatcgct
     9361 tcgccccgat tgtcatcgcc gaaatgcgtg ggatctctga cgataaaggc aactcgccat
     9421 tctgggataa tgttggagct aatttttttc atatgccttt tgtagaagcg gatcgtctga
     9481 cactagcgac gaacaaacaa tttatcgccg atttaatgcc ccgcaatcct atctatgtca
     9541 aactcctttc gccagaggcg caagcagtca ttggcaaacc acatcaatcg actatccctg
     9601 ccatgaatat tctcttaaaa gaaggctttc gttataacaa ctacgttgat atttttgatg
     9661 ccgggcctac tatcgaatca ccattattag aaattaaaac catttcttta agccggatca
     9721 tggttattaa aaacatcagt gatgaagcga gcagtagcaa tcgctattta ctcgccaata
     9781 cccaaatgga ttttcgagca acaattagcc acgctgtttt taatgaacga gaaaacacct
     9841 gcattattag caaggaaaca gcaaaattgc ttgatgtaaa acaaggagac agtctacgta
     9901 tatcacccat acgtacagaa gatactccac cattgtaacc aaggaataat gatgtctaaa
     9961 ttacaaatca tacagagtaa aggccaatat attaatggag aatggataaa gggaaatggt
    10021 ctcattctgg agtctacaaa ccccgcctcc ggaactttgc tttggcaagg gaataatgct
    10081 acagatgaag aaattgcaaa cgcttgttac gttgcgcatc gcgcactgaa atcctgggct
    10141 aataccagtt ttgaggaaag ggctcgttac actaaggctt ttgtggaaca agtagaaaaa
    10201 aatcgtgagc aactggcacg acttatttca ttagaaacag gaaagccatt atgggaatct
    10261 caaactgaag tcagctcagt aattggcaaa gtaaatttgt caattcaggc ttatcaagaa
    10321 agaacctggc caaaacaaac tgaaactgca gaagctaatg cctgcctccg ttttaaaccg
    10381 catggtattg ttgtagtatt aggcgcgttt aatttccctg cccatttaag caatggacac
    10441 attgtccctg ccctccttgc agggaacacg gtattgtata aaccaagtga acatactcca
    10501 gcagtagcgg aattgatcat ccaatgttgg cacgatagcg gcttacctcc cggagttatc
    10561 aattgtctac agggtaatgc aaattgtgga aataccctat tgtctcaaga tattcaaggc
    10621 gtctatttta ccgggagtta tgcaacaggg ttgcgtatac accaacaatt ctgtaataga
    10681 cccgaagtta ttttagcttt ggaaatgggc ggaaataacc ctttagtcat cgatgaagtg
    10741 aaagacattg atgcagctgt ataccataca atcctttcaa ctatgatcac tgcaggacaa
    10801 cgttgcacat gtgcgagacg aattataatt cctgactccc agacaggcga tctattttta
    10861 gaacgctttg ccaaggcttg taaattaatg cgaattggat cctttgatag tcagccagag
    10921 ccttttattg ggcctgttat tagccatgtt caagcattaa aacatctaca cgctcagaag
    10981 caactaatcg aaatgggggg tgaaatcatt ctgccgatgt cgcttcttct tgagtacacg
    11041 ggacttgttt ctcctggcat tattgatatg actcgcgcca agaacccgcc agatgaagag
    11101 atttttgcgc catttgcaca aatttaccgt tataatcact ttgatgaggc aattcaatta
    11161 gcgaatcaga cacgttatgg tttgtcagca ggcttactca gcgataataa agaccattat
    11221 cagcagtttt atcaaaatat tcgtgccgga ctaatcaatt ggaacagacc aaccacgggt
    11281 gctgccagta gccttccatt tggtggtgtc ggatgcagtg gaaatcatag accaagcgcc
    11341 tattttgctg ctgattattg tgcttatcct gtagcaagca tggagcaacc tctgttaaca
    11401 actccagtgc aacgattgcc aggtctggta ttggagtaat tattatgaat gtttatgaat
    11461 tgaatatgga tgggcttgtt ggtcaaactc atcattacgc agggctctcc tcgggtaata
    11521 tagcttctac aaataatgct ttatctattt ccaaccctca agctgcagca aggcaaggtt
    11581 tggaaaaaat gcggcaactt tataacatgg ggttaaagca aggcctattg cccccacatc
    11641 aacgacctaa tttgaattta ctgtatcaac tgggatttaa aggcactccc agtgagcaga
    11701 taaacaaagc ctataaaaca gcgcccgaat tgcttagtgc ctgctactct gcctcaagta
    11761 tgtggacagc taatgcagca actgtttctg caagcgtgga tactgaagac aacaaagtac
    11821 atttcactgc tgccaattta atcagcaatt tgcatcgtca ccaggaagct gatttttcaa
    11881 aaaaattatt ggaatttatc ttttccaatt ctgattattt taatcatcac cctctgttac
    11941 ccaaatcaat gggcacaagc gatgagggag cagctaatca taatcgctta tgtcaaagtc
    12001 atgcgcactc agggattaat ctctttgtat acggtaaaaa agtgctggga aatcatcaat
    12061 tcgaacagag cccaataaaa taccctgctc ggcaaactaa agaagcgtca gaagccatcg
    12121 ctcgcaacca tttattaaat cctgaacgag taatctttgc ctgtcaaaat ccattagcaa
    12181 tagatcaagg tgtatttcat aatgatgtca tctcagttgc taatgaacat gtatttctgg
    12241 ttcatgaaga agctttttat aatcaggctt atgttttgga tcaattaaga gaaaaagccg
    12301 attttccttt agtaataatt cagatctcaa aagaacaaat cagcgttagt gaagcagttg
    12361 atacctatct tttcaattct caattgatta ccctgcctga tcagaagaat atgattttaa
    12421 tagcccctgc tgaatgtcag gcaaacctta aagtaaaaac ttgtattgat ggattggtcg
    12481 ccgatcctca aaaccctatt aactcagtgt attacctgga tctgaaacaa agcatgcgta
    12541 atggcggagg accagcctgt ttacgcttgc gagttccttt gaatgactac gagcttaaag
    12601 caatgcacca aggtattcta attgataatg atttgttaga tattttagat aaatgggttt
    12661 taaaatatta ccgaactgaa ctgaaaatcc ccgatttagc tgatccgcaa ctattatatg
    12721 aatgtctgga tgcattggat gaattaactc agatcttgaa attaggctca atatatccct
    12781 ttcaatcttg agtatccgag tcatgtggaa aacaaaattc ggcaaatgta tctatatttc
    12841 accgtcagga tataaagtct atcaaaattt gttgtaccgt tggcttactt taggtagcga
    12901 agcatggcaa actgtaatta accgttatat acctcgcagg cctggtttac attatctgca
    12961 aattctgaca cttatggcgc gaaaatttcc taatgattgt tgtttattag gacttggagg
    13021 agcaggaatc gctcacctgc tgggtgcaca aaaaaccata cgctctatcg ttgccgtgga
    13081 aagtagtgaa gaagtgattc aaattgccaa aaaatttttc atgacagatt taattcctca
    13141 tttcaccatt actcaccaaa acgcccgaga ttttgtacgt gaaaacaaaa agacttttca
    13201 gcacatgctt cttgatctat atgacgcaac acattttccc gatgagtgtc attctatgga
    13261 tttcttcatt cattgtaaaa aacaattaac tgacgatgga tttttagctg ttaacttagc
    13321 aaattcccaa gaacaatggg ctctggtcca actaatcaag aaacaatttc catccaatat
    13381 cattattcca ataaaaaaat gtgccaatat tgttgtcatt gcctccaaaa atgacaacaa
    13441 agacttgttt attaaacaag tcaggaatac taatgaaata aaaaaaatta catgggtaa
//
LOCUS       DACVWI010000083        13354 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.083, whole genome shotgun sequence.
ACCESSION   DACVWI010000083 DACVWI010000000
VERSION     DACVWI010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13354
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.083"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..3843
                     /locus_tag="JBH85_08565"
     CDS             <1..3843
                     /locus_tag="JBH85_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2239 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946252.1"
                     /translation="YIELYERHKYEGNNTIDSLILTLNSLKQSRESWGQENKLAKYLG
                     FGLRIDKHPFFQPKVTQKNLHVIETVIEKLNALKESPDYQQEGETSTTRLDILGILGE
                     RFNELSKNGKTRGLFNYVMFNEGSIDFSMRESTLVEPSPLEILTGNEEPYEDEQTWEP
                     PYIHKLLDSKGIPYTIFDSLETNDLNLENDLGDHVKWAYDNIYRYSYPDSHQESTIAR
                     FHHGIQHVTRAANYACAFANLYRRHGNEEAQNLTETDIKLIQIALLFHDSAREGDDED
                     LWDHESAIFLYYYLTRVLHIDAETARFVAEATANKDPSPENGYFQLIEDEYGQLFWQF
                     AKYEEGDFPAKNIYQKIIHDCDCLDIIRARNQYDATYLDFYKDIASKNNLALEEMAEL
                     VIEARGLIYSQGDSHITKKAEIKAGYENEEAHARIIRDMQSEAYPILSTLYGKLLSLE
                     ELQAMTLVNLTPFDETAGMAGENLAAALREGRVLARGITTPSAMPTPRPNKPTLTDET
                     LAEREMRKSMRSDNINIKSRKEAPNLKYKNPLRSTSILGYGSGVYPAAGMLIFNPDIG
                     QIKRISAEDFDSGRGQKNHLAHLQEKEYKESREILERELHDLHHKMKLGLFGKKTQLG
                     SNYVELLYDINKYDAIFFTNDPTIGNEIAYNDFNPAHPLSPLLQAIYLQKQYARQYEE
                     TRKAYYERYGQERGETLFLERFGPNQFLPIYEYSGLRNKLTPYDTEKLTDENIVNMWV
                     EMCSDFMRNALSHMGRDNSYDFYDELLYNMSIEDIKVLSMYKTKGNILAKVNQPADLS
                     YNVELREKITDTIAKAKEKIIAEYEEAVFKRLQDNQLSPFSKEAFLALEYSPRLRDLC
                     SDKIKDDLLRFIYSPDGVISYKLSDIASTSLREKTTTLDIQHCSTDQRNFLCKNQFLQ
                     AFILCQQLGLEGEIQFLRNKVNELAIQVINDQSAFITGSKYELQSGLHQMINLNNIMT
                     LIDKDNHLRGNIESILLEIVSKLIDTYTNERLNLYESYMLLKTLENAGIPDVKLKHYF
                     RPVLNKANETLHERKPHDWGHYCSIARLVGDEAKPYIYSWLNDYDKPFYSEINSMLET
                     FKNAGIVFDDENLDVFKSLLEKIHYNDVAYNYVRLSYWLRVMNNLQSLASESHYSGSQ
                     LEILKNQFDRVIEKLIKTTKSEYEHASYYSQEQKCYRQLTSFAEEINTILASDFCLPV
                     PDSLITEFNLTLIAFSEMDLSQTKVDESKFHLLKQLHNKLPNPEKREQAMEKLTESMD
                     TKKQVEKDQNKNISAAGL"
     gene            4069..5277
                     /locus_tag="JBH85_08570"
     CDS             4069..5277
                     /locus_tag="JBH85_08570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0946253.1"
                     /translation="MSDISRGDIRVKGFTDSEMDFQLIRQLGSSSYRAASVGECLNIA
                     NTMKNEDPEEWVRQFERLAEWQKKDGLERMVKNHVISGREQLFKASNSFRAAEYYSPP
                     SSEHHRKLGLNSADCFCTAISSMDIHFENHSIPYKNINLPCYFISPANDGEKRDTVMI
                     VSGFDGTLEEEFLMRGLAAVERGYNVIHFAGPGQMDVFRKYPDTYFEPDFEQVVKRII
                     NYFEFRQEINMAKLTLMGISFGGYFATRAASHEPRIKVLIANSPILDLHAYMCSFVKM
                     DPCEMPDSEDFSINDLPSIPNEVMPPQLKAQTEHLIRRFGQPTFKATFHYLREFTVGD
                     SLNHIKIPCLALLGSGEGGEPGKQFAEFCKITNSAQYEFSDFEGAGSHCQVGNVSYSN
                     AVVYDWLDSL"
     gene            5339..6631
                     /locus_tag="JBH85_08575"
     CDS             5339..6631
                     /locus_tag="JBH85_08575"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HAU0946254.1"
                     /translation="MKQKELSIMSPDDSKKKSKGHIVLSSHPASHTQAPLKIKWGEKN
                     PKERGPVIASLTNIKNRNAVGTHSGSYSVYRALAVAAGLLDPEHVPDLTDTLPPVDIG
                     PHKQWGEAGKIVSLDPWGHLVASVFSEEIKAGYDIRPTIAVTRAHINIPELHIAMQKG
                     RLKPDGKILSETGDVVVTKAAIEPVWYLPGIAERFQVSEALLRRTLFEQTAGMFPELV
                     TRSDLDVFLPPIGGLTAYFFGDVTTIHNPEIELTCRIHDECNGSDVFGSDICTCRPYL
                     VHGIELSIESAQKGGAGLIVYNRKEGRALGEVTKFLVYNARKRQKGGDTAAKYFERTE
                     CVAGVQDMRFQELMSDILHWLGITKIHRFVSMSNMKYDALLKSGINVIERVKIPDELI
                     PPDARVEIDAKRAAGYYSPEGIIDINELAKPKGRALHE"
     gene            6540..7865
                     /locus_tag="JBH85_08580"
     CDS             6540..7865
                     /locus_tag="JBH85_08580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1688 family protein"
                     /protein_id="HAU0946255.1"
                     /translation="MPSVQQDITHPKELLISTNWLNRKDVPFMNNQEQQIQNVLNTLR
                     DPDTIRTRSHRILNLAKQNRLEHFSLNPERMTTTASYIVDIITSRYPELDIPYHSRWR
                     HFEMDGLPRIHNLRKQLDPISPSEWGKILYELVIISVFLDAGAGPLWRYKEALTEKEY
                     SRSEGLALASLYLYESGAFSADPTNPFRVDAERLLDFKETDLIKGFQVSSTNLLEGIP
                     GRVSLLNRLGEIIHRKEHCFNRRKRLGEFYTYVESLQDNKILPTTKLFEAVLETFNDI
                     WPVRLIYHGVSLGDVWIHSALKTNEAGSEYIPFHKLSQWLTYSLVEPLEQTGIDIADL
                     DVLTGLPEYRNGGLLIDTELLKVRNNKILEQPQDPGSEPIVEWRALTVALLDELALLI
                     RQQLNMNAESLPLAKILQGGTWEAGRQIAQKKRINGTPPIEIISDGTIF"
     gene            7878..8522
                     /locus_tag="JBH85_08585"
     CDS             7878..8522
                     /locus_tag="JBH85_08585"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HAU0946256.1"
                     /translation="MDFNQVKVINHPLIQHKLTIMRKKETSTVKFRTLMHEVSMLLAY
                     EVTRDLEIEYEEIETPLATMQSPVLKGKKLVFVSILRAGNGLLDGMLQLVPTARIGHI
                     GLYRDPKTLEAVEYYFKLPEHTQDRDVIVVDPMLATGNSAIAAVKEVKALHPKSIKFL
                     CLLASPEGISNFHGEHPDVPIFTAAIDEQLNDHGYIVPGLGDAGDRLYGTKLAH"
     gene            8635..8835
                     /locus_tag="JBH85_08590"
     CDS             8635..8835
                     /locus_tag="JBH85_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946257.1"
                     /translation="MLKNYHQFFCGLPLSVYAGTTDVMYQDSKEFWQGNARKQATANI
                     VSWHSPYCIKSYLITLRGSEEC"
     gene            8787..11729
                     /locus_tag="JBH85_08595"
     CDS             8787..11729
                     /locus_tag="JBH85_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946258.1"
                     /translation="MHKVISNHSTRERRMLELNDKETAVIKAIHHNHKKRLESQMITR
                     FGVYFEQSKHPEKLYSWIEKIEDTRLLANHYLDTIALSRAPSTISSLEKETAGSSYYI
                     EKAKLLIPESIRNFLSDINSSNDNTLFNFVAAEVFSLALGKSITDLLFDYFNNEFLGA
                     PENVQKEFNETLEKQTELSNLIKKECERISIEIIKLFHFREMLLLGKISKSPIEPNSR
                     EEFIAKAKIANQSGESVHLAIEIYFARELSRIFNSGFKSLYQVHDVEIQSEHQSPLVK
                     WINQMSESEQVRLAFTQEIQLKFMLLAKDFLLEKMNQKGILARYPIIFSLFAGVIIAP
                     IVGVTMIIMTGGTFLWAIGALAVLVFALSCIATHLLINKLSVLTYQRSSDNRAHIQQS
                     IDMINGEFLRLKKESLLKKETTSEVIENTRDFQKINQNFHLVTIGKKVARGSVSGWLR
                     EYASRYRHSKAIEIDLGDEYKELITQSRIQTQELIHSINKKNSKLLIKWIHDTMTYLQ
                     DEKNQSVIEEFELIPKMKEQVLEIVCQLNYIPPMLLKFYSNSREKGGLGGNESDFSHI
                     KRLTPIDAPDKPRHNPYNYLCDTALNLFKKYEPLYTSTCIFLGDPEYRQMLGIARRDA
                     GEPLTAENINRYLDNSYAFLLSLCHKIKPGLGLDPLQQSARVTDEFVLYRMLLLKQLA
                     AISESDSKEISNEIKFKIRLFIQKYFNQDTKIIFDDLENQMFLLNKEAPNSRIYKNSD
                     HFEVIDTELDNIFQAITLDMAYNSNNFRFIDILDYFINKFIKEYDSQSATVFAYGKAE
                     QEINPQGTKYYLKTLAQYCNNTTEFLKSAQTNTTLTATNLLDCYRYNISLQVCRTQIR
                     IICSIKEINKLKITNETTEQITLLLKSFQQLAEFAKIHCFLLKTDSSCYRLFKLIENK
                     AMQSTLSRDWIRQLDAKEALVYMMDDLPNQLRLSTDYNVSNLFFSSTKQNKREKMEPL
                     EEHIVKPT"
     gene            complement(11992..13284)
                     /gene="dctA"
                     /locus_tag="JBH85_08600"
     CDS             complement(11992..13284)
                     /gene="dctA"
                     /locus_tag="JBH85_08600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DctA"
                     /protein_id="HAU0946259.1"
                     /translation="MNFLKKLYVQVLLGVFIGILLGYFLPDVGVQLKAIADVFIKIIK
                     MLISPIIFLTLVSGIAAMNDMRQVGRLAGGALLFFTFITTLALLIGLLATDYFKPGVG
                     LNVNPNSLDAKEASSYLEGAHKVTNVTDLLINIIPRTFISAFVDGELLQVIFISILFA
                     IGLILTGNMGKSLVNGMQILSNVFFKIIHLVMYMAPIAAFAAMAFSVGKFGVGPLFNL
                     IGLLACYYLTSIFFILIILGSLLQWYCKINIWHLLRYLKDELLIVWSTASSETVLPSL
                     MQKLERLGCEQSVVGLILPLGYSFNLAGTAIYLTMAAMFIAQATNTDLTVWQELSLLG
                     VMIISSKGAAGVSGSGFIVLASSLATIGHIPAAGVVLVLGIDKFMNEARSIINMMANA
                     IATIIISRWQQSLDYQKTQFELQEKGQAETKSVYASEM"
BASE COUNT         4495 a         2612 c         2533 g         3714 t
ORIGIN      
        1 tatattgagc tttatgaacg ccataaatat gagggaaata atacaataga ttccttgatt
       61 ctgactttga atagtttaaa acagagcagg gaaagctggg gacaggagaa taagcttgcc
      121 aagtatttag gctttgggtt gcgtattgac aaacatccgt tttttcaacc caaagtgacg
      181 caaaaaaatt tacatgtaat agaaactgtt atcgaaaaat taaatgcttt aaaagagagt
      241 ccagattacc agcaagaagg agagacatca acaactcgcc tggatatttt agggatatta
      301 ggagagcgat ttaacgaact atccaagaat ggtaaaaccc gtggattatt taattacgtc
      361 atgtttaatg agggttcaat tgatttctca atgagagaga gcactcttgt ggagccatca
      421 cctttagaaa ttcttactgg aaatgaggag ccttacgaag atgaacaaac gtgggaacct
      481 ccctatattc ataaactact cgattcaaaa ggaataccat atacaatttt tgattcttta
      541 gaaacgaatg atttaaatct tgaaaatgat ttgggcgatc atgtcaagtg ggcttatgac
      601 aatatttatc gttattccta tcctgactcg caccaggaat caactatagc tagatttcat
      661 cacggaatac aacatgttac ccgagctgca aactatgcat gtgcatttgc caatttatac
      721 aggagacatg gtaacgagga agcccaaaat ttaacagaaa cagacatcaa actcattcaa
      781 attgctttgt tattccatga ttcggcccga gaaggagatg atgaagattt atgggatcat
      841 gaaagtgcta tctttttata ctattatctg acacgtgttt tacatattga tgcagaaaca
      901 gcaagatttg tagctgaggc aactgcgaac aaagatccga gtccggaaaa tggctatttt
      961 cagctcattg aggacgaata tggtcaatta ttctggcagt ttgcgaagta tgaagaagga
     1021 gattttcctg caaaaaatat ctatcaaaaa ataattcatg attgcgattg tcttgatatc
     1081 atcagggcaa gaaatcaata cgatgccacc tatcttgatt tttataagga tatagccagc
     1141 aaaaacaatc tcgcattaga agaaatggcc gaacttgtca tagaagccag aggcctcatc
     1201 tatagccagg gtgattccca cattactaaa aaagcagaaa tcaaagcagg ttatgaaaac
     1261 gaagaagctc atgcccgcat aatcagggat atgcagtcag aagcttatcc aatactcagc
     1321 acattgtatg gaaaactgtt atctttagaa gaattacagg ctatgacctt ggttaatctt
     1381 actcccttcg atgaaacagc aggaatggct ggagaaaacc ttgctgcggc attgagagaa
     1441 gggagagttc tggcccgtgg cattactaca ccaagtgcca tgcctacacc cagacccaat
     1501 aaaccaactc taacagatga aacattggcc gaaagagaaa tgcgaaaatc catgcgctct
     1561 gacaatatta acatcaaaag cagaaaagaa gcacctaatc tcaaatacaa aaacccgctg
     1621 cgctcaacct ccatactcgg ttatggaagt ggagtctatc cagctgcagg catgttgatc
     1681 ttcaatccgg atataggtca aattaagagg atttcagctg aggattttga tagtggccga
     1741 ggtcaaaaaa accatctggc ccatttacaa gaaaaagaat acaaagagtc tcgtgaaatt
     1801 ctggaaaggg aacttcatga tcttcatcat aaaatgaaat tgggcttatt tggcaaaaaa
     1861 acgcaacttg gctcaaatta cgttgaactt ttatatgaca ttaacaaata cgatgccatt
     1921 ttctttacta atgacccaac cataggaaat gaaattgcct ataatgattt caatccagct
     1981 catcccctgt cccctctctt gcaagccatt tatttacaga agcagtatgc aagacaatat
     2041 gaagaaactc gtaaagctta ttatgaacgc tatggacaag agaggggtga aacactattc
     2101 ctcgaacgct ttggccctaa ccaattttta ccaatttacg aatattccgg cttaaggaat
     2161 aagttaacgc cttatgatac agaaaaatta acagatgaga atattgttaa tatgtgggtg
     2221 gagatgtgtt ctgatttcat gagaaatgct ctgtcccata tgggtagaga taatagctat
     2281 gatttttacg atgaacttct ttataacatg agtattgaag acataaaagt tttaagcatg
     2341 tacaaaacaa aaggaaatat attggcaaaa gtgaatcaac cagctgattt aagctataat
     2401 gttgaattaa gggagaaaat tactgatacc atagccaaag ctaaagaaaa aataatagca
     2461 gaatatgaag aggctgtttt caaaagactt caagacaatc aattatctcc attttcaaaa
     2521 gaagcatttt tagcactaga atatagccct cgtttgagag atttgtgctc tgataaaata
     2581 aaggatgatc tattacgctt tatatactcc ccagatggag tcatttctta caaattatct
     2641 gatattgcct caacctcatt aagagaaaaa acaacgacgc ttgatatcca acattgcagc
     2701 actgatcaaa ggaatttttt gtgtaaaaat caatttttac aagcctttat tctatgtcag
     2761 caattaggtt tagagggaga aatacaattc ttgcgcaaca aagtgaatga attggcaata
     2821 caagttatta atgatcaaag tgctttcatt acagggagca aatatgaatt gcaatcaggc
     2881 ttacatcaga tgattaacct aaacaatata atgactttaa tagataagga caatcaccta
     2941 aggggtaaca ttgaatcaat cttattggag atagtttcta aactgataga cacttacaca
     3001 aatgaaaggc tgaatttata cgaaagctac atgttactta agacactcga aaatgcaggc
     3061 attccagatg tcaaattaaa acactacttt aggcctgtat taaacaaagc gaatgagacc
     3121 ctccatgaga ggaaacccca tgattggggt cattattgct ccattgccag gttggtagga
     3181 gatgaagcga aaccttatat ttacagctgg ttgaatgatt acgacaagcc attctattcc
     3241 gagattaatt cgatgcttga gacatttaag aatgccggga ttgtttttga tgatgaaaat
     3301 ttggatgtat tcaaatcatt attggaaaaa attcattaca atgatgtggc ctacaactac
     3361 gttcgcttat catattggct tagggtgatg aataacctgc agtccttagc ttctgaaagc
     3421 cattattcag gatcccaact ggaaatttta aaaaaccaat ttgatagagt cattgaaaag
     3481 cttatcaaga ctacaaaatc agagtatgaa catgcttcct actactcaca agaacaaaaa
     3541 tgttaccgtc aattaacatc gtttgctgaa gaaattaaca ccattttggc ctctgatttt
     3601 tgtttaccag tccctgactc gctgattacg gaattcaatc tgactctgat tgcctttagt
     3661 gaaatggact taagccaaac taaagtggat gaatcaaagt ttcatctttt aaaacaactt
     3721 cataataaat tgccaaatcc ggaaaaaaga gagcaggcga tggaaaagct cactgaatct
     3781 atggatacaa aaaaacaagt tgaaaaagat caaaataaaa acatttcagc agcgggcctc
     3841 tagcgtgata atatcagact aattagatca ttatttaatc tacttgagcc aataaatttc
     3901 atattaatgc gttgagcgat gttaacatct tttggtttgt aaaatttata ccatatttta
     3961 tgcattatca tgatttaagg attttttatt taagattgat gttcttggca tgtaccgtta
     4021 ctattaagct cataacactc tgtaaaacgg aaataacgga gaagtaaaat gagtgatatc
     4081 agtcgtggcg atattcgggt gaagggtttt actgattcag agatggattt tcaactaatc
     4141 cggcaactgg gatccagcag ctatagagcc gcatcagtag gtgaatgttt aaatattgca
     4201 aacaccatga aaaatgaaga ccctgaagaa tgggtcagac agtttgaacg gttagccgag
     4261 tggcaaaaaa aggacggttt ggaacgcatg gtaaaaaacc atgtcataag cggtcgagag
     4321 caattgttca aagcctccaa ttcatttcgt gccgctgaat attactcccc tccttcctca
     4381 gaacatcaca gaaaattggg attgaattca gcagattgct tttgcacagc catctcaagc
     4441 atggatatcc attttgaaaa ccattccatt ccttataaaa acatcaatct cccatgctat
     4501 tttatctccc ctgccaatga tggagaaaaa cgagataccg tcatgatagt cagtggcttt
     4561 gatggaactt tggaagaaga gttcctcatg cgcggattag ctgcggtaga acgtgggtat
     4621 aatgtgattc atttcgcagg ccccggccaa atggatgtct ttcgaaaata tccggacact
     4681 tattttgagc ctgattttga gcaagtggtt aaaagaatca ttaattattt tgagttcagg
     4741 caagagatca atatggccaa attgacattg atgggcatta gttttggcgg ctatttcgca
     4801 actcgtgccg cgagccatga accaagaatc aaagttttaa ttgctaactc ccctattctg
     4861 gatttacatg cttatatgtg ttcctttgta aaaatggacc cttgtgaaat gcctgattct
     4921 gaagatttta gcatcaatga cttaccctct atacccaatg aagtgatgcc ccctcaactc
     4981 aaagcccaaa cagaacattt aatcagaaga tttgggcaac ctacttttaa ggcaacattt
     5041 cattatttaa gagagttcac cgtaggtgat tcattaaatc atattaaaat cccttgcctt
     5101 gcattattag gaagtggcga aggaggagag cctggaaaac aattcgcgga attttgcaaa
     5161 ataacgaatt ctgcacaata tgaatttagt gattttgaag gggctggaag tcattgtcag
     5221 gtaggcaatg tttcttattc caatgctgtg gtttatgatt ggttagacag tttataacaa
     5281 cagtgtgcac ctgcttataa aagataaaag ataaaacaac cgatttattt gagcaccgtt
     5341 gaaacaaaag gaattaagta tcatgtcacc agatgattca aagaaaaaat caaaaggaca
     5401 cattgtcttg tcttcacacc cggcaagcca cacacaagct ccattaaaaa tcaaatgggg
     5461 tgaaaaaaac cctaaagaga gggggcctgt tattgcttct ctcactaata tcaaaaatcg
     5521 aaatgcagtt ggaactcact cagggtctta ctctgtttac agggccttgg cagtagcagc
     5581 tggtctgctg gatcccgaac acgttcctga tctgaccgat accctgcctc ctgttgacat
     5641 agggcctcat aagcaatggg gtgaagcagg caaaattgtc tccctcgatc cctgggggca
     5701 tctagtggct tctgttttct cagaagaaat aaaagccggc tatgacatca gaccaaccat
     5761 tgccgtcaca agggcacata ttaatatccc ggaattgcat attgccatgc aaaaaggcag
     5821 attaaaacct gatggaaaaa ttttaagtga aacaggggat gtcgtggtga ctaaggccgc
     5881 gattgaacca gtctggtact tgcctggaat tgcggagcgc ttccaggttt cagaagcatt
     5941 gctcagacgc actctttttg aacaaaccgc tggaatgttc cctgaactgg tgacccgtag
     6001 cgacttggat gtctttttgc cgcccattgg aggattaact gcttatttct ttggtgatgt
     6061 gactaccatc cataatccgg aaatcgaatt aacttgccgt atccatgatg aatgtaatgg
     6121 ctccgatgtc tttggttctg acatatgcac ttgcagacca tatttggtcc atggaatcga
     6181 attatccatc gaatccgcac aaaaaggagg cgcaggcctt atcgtttata atcgcaaaga
     6241 aggaagagct cttggggagg tcactaaatt tctggtttat aacgccagaa aaagacagaa
     6301 aggtggtgac actgcagcca agtactttga aagaacggaa tgcgttgccg gtgttcagga
     6361 tatgcgtttc caggaattaa tgtccgatat tcttcattgg ctggggatca ctaaaattca
     6421 tcgcttcgtt tcaatgtcca atatgaaata cgatgccttg ctcaaatctg gaatcaatgt
     6481 tattgaacgg gtaaaaatac cggatgagtt gattcctcca gatgcccggg tagaaataga
     6541 tgccaagcgt gcagcaggat attactcacc cgaaggaatt attgatatca acgaattggc
     6601 taaaccgaaa ggacgtgccc ttcatgaata atcaagagca gcaaatacaa aatgttttga
     6661 atacgcttcg tgatcctgac accataagaa cccggtcgca tcgtatttta aacttggcaa
     6721 aacaaaatcg gctggaacac ttttccctga acccggaacg aatgacaaca acggcatcgt
     6781 atatcgtaga cattatcacc agccgttatc ctgagcttga tattccatat cacagccgct
     6841 ggcgtcattt tgaaatggat ggccttcccc gaattcataa tttacgcaaa caactggatc
     6901 caatttcccc ctcagaatgg ggaaaaatac tctacgaact ggtcatcatc agtgttttcc
     6961 tcgatgcagg ggcaggcccc ctatggcgct ataaagaagc tctcactgaa aaggagtaca
     7021 gtcgctctga aggattagcc ctggccagtt tatacctcta tgaaagtggg gcatttagcg
     7081 ctgacccaac taacccgttt cgcgtggatg ccgagcgtct gcttgacttt aaagaaacgg
     7141 atctcataaa aggttttcag gttagctcta ccaatctgct tgaaggaata cccggtcgag
     7201 tatccttgct taatcgcctt ggagaaatca ttcatcgcaa ggaacactgt tttaatcgcc
     7261 gaaaacgtct tggtgaattt tatacttatg tggaatcctt gcaagacaac aaaatactgc
     7321 ctactaccaa attattcgag gccgtgttag aaacattcaa tgacatatgg cctgttcgat
     7381 tgatctatca tggagtatct ttaggcgatg tctggatcca cagcgcattg aaaaccaatg
     7441 aggccggatc tgaatacata ccctttcaca aattatcaca atggctcact tattctttag
     7501 tagaaccact ggaacaaaca ggtattgata ttgctgattt ggatgtattg accggattgc
     7561 ctgagtatcg aaatggtggt ttactaatcg ataccgaact attaaaagta agaaataata
     7621 aaattctgga gcaacctcaa gaccctggct cagagcccat agtagaatgg cgtgctttaa
     7681 ccgtagcctt gctggatgag ctagcgctat taatcaggca acagctcaac atgaatgcag
     7741 aatctcttcc cttagccaaa atactgcaag gaggcacttg ggaggcggga cgacagattg
     7801 cacaaaagaa acgaattaat ggaacacccc caatagaaat tatcagtgat ggcacgatat
     7861 tttaataagg aataataatg gacttcaatc aagttaaggt tataaatcat cctctcattc
     7921 agcacaaact caccataatg agaaaaaaag aaaccagcac agtaaaattt cggacactca
     7981 tgcacgaagt cagtatgcta ttagcctatg aagtcactcg ggatttggaa atagagtacg
     8041 aagaaataga aactcctttg gccactatgc aatcacctgt tttgaaagga aaaaaacttg
     8101 tttttgtctc gatattacgc gcgggtaatg gtctactgga cggcatgtta caattagttc
     8161 ctactgcccg aattggtcat ataggtctct atcgagatcc caaaacgctg gaagcagtcg
     8221 aatactactt caagctacct gaacacacac aagacagaga tgttattgtt gttgacccca
     8281 tgctggcgac aggaaattca gccattgccg cggttaaaga ggtcaaggca ttacatccca
     8341 agtcaattaa atttctttgt ctactggcct ctcctgaagg aatttccaat tttcatggag
     8401 aacatcctga tgtcccaata ttcaccgcag ccatagatga gcagctgaat gatcatggat
     8461 acattgttcc tggtttagga gacgcaggag acaggctata tggcacaaaa ctggctcatt
     8521 aatgctgaat tatccttatt tcagggatac ctaatcagcc aatagtacgt ttaaataata
     8581 attaagattg tcttgccctt tcagtaatga ctgctttcac tttttgacaa gggcatgctg
     8641 aaaaattacc accaattttt ctgtggactc cctctgagtg tttatgcggg aacaacagat
     8701 gtgatgtatc aagattctaa agaattttgg cagggaaatg ccaggaaaca agcaacagca
     8761 aatatagtct cttggcatag cccttattgc ataaagtcat atctaatcac tctacgaggg
     8821 agcgaagaat gttagaactg aacgacaaag aaactgcagt cattaaggct attcatcata
     8881 accataagaa gcgacttgaa agccaaatga taacccgttt tggggtatat tttgagcaat
     8941 caaaacatcc tgaaaaatta tattcctgga tagaaaaaat tgaagacacg cgcctcttag
     9001 ctaatcacta tctcgacact atcgctctaa gccgagctcc aagcacaata tcttcattgg
     9061 aaaaggaaac agcaggttct tcctactaca ttgaaaaggc aaaactgctt atcccggaat
     9121 ctataagaaa ttttctttct gatatcaatt cttccaatga caatacctta ttcaattttg
     9181 tagccgccga ggtcttttct ctcgctttag gcaaatcaat taccgacctg ttattcgatt
     9241 acttcaataa tgaattttta ggggcgccag agaatgtaca aaaagaattt aatgaaaccc
     9301 tggaaaaaca aactgaatta tccaatttga taaaaaaaga atgtgagcgc atctccatag
     9361 aaattatcaa attatttcat ttcagagaaa tgttgctgct tgggaaaata agcaaatcac
     9421 caatcgaacc caattccaga gaggaattca ttgccaaagc aaaaattgcc aaccaatctg
     9481 gcgaatctgt tcatttggct atagaaatct attttgcacg tgaattaagt cgtattttta
     9541 actcaggttt taaatcactt tatcaagtcc acgatgtgga aattcaaagt gaacatcaat
     9601 cgcctctggt caagtggatc aatcaaatgt cagagtctga acaggttcga ttggccttta
     9661 ctcaggaaat ccagttgaaa ttcatgcttc tggcaaaaga ttttttactg gaaaaaatga
     9721 atcagaaagg gatactcgca agatacccta tcattttttc actctttgca ggagtcatta
     9781 ttgctccaat agtcggtgtg actatgatta ttatgactgg cggtactttt ctatgggcga
     9841 taggtgctct agctgtcctg gtttttgctc tctcttgcat agcaacgcac ctcctgatca
     9901 ataaactcag cgtattaact taccaacgtt cttcggataa tagagctcat attcagcaat
     9961 ctatcgacat gataaatgga gagtttttac gtttgaaaaa agaaagttta ttaaaaaaag
    10021 aaacaaccag tgaggttatt gaaaatacaa gagattttca aaaaatcaac cagaattttc
    10081 atttagtcac gattggtaaa aaggtagcca gaggctcagt atctggatgg ttaagagaat
    10141 acgcttctcg gtataggcac agtaaagcca tcgaaattga tttgggggat gaatacaaag
    10201 aattaattac tcaaagcagg atacaaactc aagaactcat tcattcgatt aacaagaaaa
    10261 actccaagtt attgattaag tggattcacg ataccatgac ttatttgcag gatgaaaaaa
    10321 atcaatctgt gattgaagaa tttgaattaa tccccaaaat gaaagagcaa gtccttgaga
    10381 ttgtctgtca actcaattac atccccccta tgttattgaa attctattct aactccagag
    10441 agaaaggtgg cctgggaggt aatgaatctg atttttctca tataaaacgt ttgaccccca
    10501 ttgatgcgcc agataaaccc aggcataacc cctataatta tctctgcgat acagctctga
    10561 atctgtttaa aaaatatgag cctttatata cttcgacttg tattttttta ggagacccgg
    10621 aatatcgaca aatgttaggt atcgccagaa gagatgccgg ggagcctcta acagcggaaa
    10681 acatcaatcg ttatcttgat aactcctatg cctttttatt atcgctttgc cataaaatca
    10741 aacctggatt aggcttggat cccttacaac aatcagcgcg tgtcactgat gaattcgttc
    10801 tctacagaat gctgttgtta aaacagctgg cagcaatttc cgaatctgat agcaaagaaa
    10861 taagcaatga aatcaaattt aagattaggc tttttattca aaaatacttt aatcaggata
    10921 ccaaaatcat ttttgatgat cttgaaaacc aaatgttttt gctaaacaag gaagccccca
    10981 actcccgtat ctataaaaac agcgatcatt ttgaggtaat tgatacggaa ttggataaca
    11041 tttttcaagc catcactctt gatatggctt ataactccaa taatttcaga ttcattgata
    11101 ttcttgacta cttcattaat aaatttatta aagaatacga ctcccagtcc gcaacagtat
    11161 ttgcttatgg aaaagcagaa caggaaatca accctcaagg cacaaaatac tatctcaaaa
    11221 ctcttgctca atactgtaac aatacgaccg aatttttaaa aagcgctcaa accaatacaa
    11281 cattaacggc cacaaatctc cttgattgct atcgatacaa catcagtttg caagtttgta
    11341 gaacgcaaat tcggattatc tgtagcataa aggaaatcaa taaattaaaa ataacaaatg
    11401 agactactga acaaataacc cttctactca aatcctttca acaacttgca gagttcgcaa
    11461 aaatccattg tttcttgtta aagactgact cttcttgtta tcgattattt aaactgattg
    11521 aaaacaaagc aatgcaatct actttatcca gagattggat aagacagctc gatgcaaaag
    11581 aagcgctcgt ttacatgatg gatgatctgc ctaatcagtt aagactttct acagattaca
    11641 acgtttcaaa tttatttttt agttcgacaa agcaaaataa aagagaaaaa atggaaccct
    11701 tggaagaaca tatagtgaaa ccaacctaaa ttaatttaga ggtattattg gtaaataaaa
    11761 actcggtatt ttggagcctg gatggctaat acaaggacat ccaggttttt ctataagctt
    11821 gatttttttg aggggttaca tgcccccttt cgcaatagaa cgggacttac caaaaactcc
    11881 aaggtcgagg caaaaaatgt ttttaatgag ggagcttaga taaactaaat gaccgaatta
    11941 aaaacatttt tcacgatgag attggggttt ttcgtgagtc ctgtagaaat tttacatctc
    12001 actagcataa acacttttgg tttctgcttg tcctttttct tgcaattcaa attgagtttt
    12061 ctggtaatcc aaagattgtt gccacctgga aataataatc gtggcgattg cattagccat
    12121 catattaata attgacctgg cttcattcat gaatttatcg atacccaaaa caagaacgac
    12181 acctgcagca ggaatatgtc ctatcgtagc taatgagctt gccaacacaa taaatccgct
    12241 tccggacacc ccagcggcac ccttggaact aatgatcata actcccagaa gcgacagttc
    12301 ctgccaaaca gttaaatcag tattggtagc ctgtgcaata aacatagctg ccattgttaa
    12361 atagattgca gttcctgcca aattaaaaga atatcctaat ggcaagatca aaccgactac
    12421 agattgctca caccccaatc gctccagttt ctgcatcaaa cttggcagta cggtttcgga
    12481 ggaagcagta ctccatacga ttaaaagctc atcctttaaa tatcgtaaca gatgccagat
    12541 attaattttg cagtaccatt gcaaaagact tcccaagata atcaagataa agaaaatgga
    12601 ggtcagataa taacaagcca ataatccaat taaattaaac aaagggccaa ctccaaattt
    12661 cccaacgctg aacgccatag cagcaaaggc agctataggc gccatataca ttacaagatg
    12721 aatgatttta aaaaagacat tagacaggat ttgcatccca ttaaccaaag atttgcccat
    12781 attgcctgta agaatcagac ctatagcaaa caatatcgaa ataaaaataa cttgcagcag
    12841 ctcaccatcg acaaaagcgc taataaaagt tctcgggata atattaatta gcagatcagt
    12901 cacattggtt accttatgtg ccccctcaag gtatgaactc gcttccttgg catccagaga
    12961 attgggattc acatttaaac caacaccagg cttaaaataa tctgtcgcca gaagacctat
    13021 tagcaatgcc agagttgtga tgaacgtaaa aaaaagcaat gccccacctg ccaagcgccc
    13081 aacttgcctc atatcattca ttgctgcgat tccggagacc agggtgagaa atataatagg
    13141 agaaattagc atcttaatga ttttgataaa aacatcggct atagctttta attgaacccc
    13201 tacatcaggc aaaaaatatc caagcaaaat accaatgaaa acacccagaa gaacttgtac
    13261 atataatttt ttaagaaaat tcatttttat tctccaggtc gtttactata aacaactatt
    13321 caaaagcaaa gcatgaagca ctaaaaattc tttc
//
LOCUS       DACVWI010000084        13330 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.084, whole genome shotgun sequence.
ACCESSION   DACVWI010000084 DACVWI010000000
VERSION     DACVWI010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13330
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.084"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            25..219
                     /locus_tag="JBH85_08605"
     CDS             25..219
                     /locus_tag="JBH85_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946260.1"
                     /translation="MKKSTMAVATLLAALSTAPMVSVAYADDTSNTTTSSCTGCKGCK
                     GCNGCKGCGGCGGCGGCSGD"
     gene            290..1003
                     /locus_tag="JBH85_08610"
     CDS             290..1003
                     /locus_tag="JBH85_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946261.1"
                     /translation="MNSQSDFNLPILSSWYKKKFLGYASQVLEAQQKMTSSKGKNILH
                     YTLRKKRKHERMSHYPKGDRIDRSTGSQYFYHCHRENFESNEHGHFHCFLRYKHIPKR
                     IKPAPLEDWDKYIDNPMTHLVAIGMNQFGQPIRLFTVNRWVTSEIWYGAEHIPYFLKS
                     YKMTLIDDPYWQVLDQWVEGMLHLFAPQIAWLHQERDKRIQLHQLNSPNDNPYTNHEL
                     EELSEINIDLKKQIEWVIS"
     gene            1156..3498
                     /gene="purL"
                     /locus_tag="JBH85_08615"
     CDS             1156..3498
                     /gene="purL"
                     /locus_tag="JBH85_08615"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HAU0946262.1"
                     /translation="MQNLTETLDFSSLNRGEIEKLLRDYNLNLSVDEALTIQNEFLKR
                     PPTISECVLWSIQGSEHCSYKSSRIHLKQFNTSGPHVILGAKEDAGIVSVAQDKNGYR
                     YGVIVSHESHNHPSQIVPYEGAATGVGGNVRDVCCMGGEVIAVADSLRFGDIKRARTH
                     WIQEGVVSGIAGYGNPLGIPNIAGDVYYDPAYNENCLVTVVTLGIVREDHIIHSYAPP
                     EAENYVFILVGKPTDNSGFGGASFASTVLEEDSQEKNKGAVQEPNAFLQRHLLKANYS
                     LFQLLREKNLIDKVGFKDLGAGGVACASIELAEAGGSYGAEIDLDKVPTGMPGLMPSV
                     ILCSETQERFMWVVPPDLVDTILKHYNETFALPQVSEGACAAVIGKIRTDGLYVVNYK
                     GRELVRAKVPDVTKGIVYNRPHASSQKQNTEPVFLPPDDYNQILLQLLAHENIASKEP
                     IFEMYDKQVQGRTLIQAGWADAGVLQPFNESKYPEEIRKTGIALSLDQNPRYNKIDAY
                     WGAVNAVVESVRNITAVGATPVAITDCLCFGNPEKPEQMREFVDSVRGISDACAAVHL
                     KDHPQSTLPVIAGNVSLYNESVKGAIPPSPMISCLGTLPDIDFAITFDFKKSDSLLIL
                     IGERKDECGGSVYYQLHNELGSNVPKPDLSLFNREIHAVSSAIQHGLVNAAHDVSEGG
                     VAVALAEMSFKNSLGVAVQINGELSADKLLFGETGGFILEIDKQHKAAFDKLVTQYQV
                     PYMVIGHTTEQPVLQMNSVINLPVEEARQAWENGLRERLL"
     gene            3465..4541
                     /locus_tag="JBH85_08620"
     CDS             3465..4541
                     /locus_tag="JBH85_08620"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HAU0946263.1"
                     /translation="MGKWLKREAIIMSTINYKSAGVDIEAGNEAVARIKRNVEKTFSP
                     QVLTGIGSFGAMYDLKPFMEKFKHPVMVQSIDGVGTKTIVARMMQKFDTIGIDLVSAT
                     TNDIIVLGARPLTLLDYIATDRLKPEYIEEIIIGMTQACLENNISLVGGETAEMPDTY
                     LKGEHDLVGIITGVVEKDEAILGKDITPGDSVLAFPSSGLHTNGYSLARKLLFELGGY
                     TVESQLDELDATVGEALLVPHINYTNPVLHLLNNKIPIKGMAHITGGGVLENIPRVLP
                     NHCSVEINKNSCPVLPIFNVLKALGKLDDQEMYRTFNMGIGLVMIASPGVVSEIYTAL
                     KEFPNFPVYEVGKVVSGKPEVRLL"
     gene            4538..5800
                     /gene="purQ"
                     /locus_tag="JBH85_08625"
     CDS             4538..5800
                     /gene="purQ"
                     /locus_tag="JBH85_08625"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HAU0946264.1"
                     /translation="MMKIAVVQFPGSNCERETMLAVQRAGMTPVEFLWNDSSQKLREM
                     DGYIIIGGFSYEDRSRAGIIAALDPVMKEIKLQSELGKPVLGICNGAQILVETGLVPG
                     LKNYQIGMALTENKRIQDGKILGTGFYNSWIHMRTGDRVRQNAFTRYLSKDSVLSIPA
                     AHAEGRFVMPVKLLQEIEEEGLNAFQYCDAQGNRDDNFPVNPNGSLRNIAAIINKAGN
                     VMAIMPHPERTFAGDPIFHSMKEYIKEKKTFKQQTLSYQPEPVKIIPYDKKDNAHELI
                     VKLIITDNAALTVQNTLRQLGIPVTVNRMMYWHVDTNFPETIEKIKQTGVLYNDRKEY
                     LVTSEHIFSSAAKAFLVKSKDDMIGQQKLQMLRDHFSIDGVDAIHHGVLWMFSSENVK
                     IQELAESILATNIIFNPNAHICYEYQCP"
     gene            5766..6761
                     /locus_tag="JBH85_08630"
     CDS             5766..6761
                     /locus_tag="JBH85_08630"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HAU0946265.1"
                     /translation="MLISAMNTNVPSQEDLLAALPFCLTETSLPFGKKYKGKVRDTYD
                     LGDQLILVTTDRQSAFDRCLAAVPYKGQVLNLTSAWWFKNTQSIVPNHLIAVPDPNVA
                     IAKKCKIFPIEFVVRGYISGSTSTSLWTQYQKGVREYCGITFPDGLRKNQKLESPVIT
                     PTTKETLHDRPISPHEIVAEGWMTQEDWDETSSYALKLFQHGMEVAQQHGLILVDTKY
                     EFGRDAEGRIVLVDEIHTPDSSRYWLFNGYQERFDAGKEPENIDKEFLRLWFVDHCDP
                     YKDEVLPQAPQELIVTLASRYIQLYEMITGESFVYDSNPGPVNDRILHNIQRWLG"
     gene            6784..8283
                     /gene="purF"
                     /locus_tag="JBH85_08635"
     CDS             6784..8283
                     /gene="purF"
                     /locus_tag="JBH85_08635"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HAU0946266.1"
                     /translation="MCGIVGIYSHEPVAAELYDSLIHLQHRGQDASGILTGADRFYFK
                     HGLGLVRESIFSEDILKLKGNIGIAHVRYPTAGGYSEADVQPLWIGSPRGIALAHNGN
                     LVNYGELVDDLCGKQHRHLNSTLDSEALLLLLADYLAKGSYSDHDEEQFFQLLCMAVN
                     EIHQRVQGSYSVVSLVIGKGLVAFRDPHGIRPLVWGERVHENGSKDYIFASETTPFYA
                     LGFEPKGDLQPGEVAYVNQQGQLYRKVLSSKKFTPCIFEYVYFARPDATLDDVSVYRA
                     RLRMGQNLAKSWKKRFPDTLPDVVIPAPSTANTAALAFANELGIRYSEGLYKNPFIGR
                     TFIMPNQESRSRQVRYKLTPQKTEINKKKVLIVDDSIVRGTTSREIVRMIREYGASEI
                     YFVSTCPPIKNPCFYGIDIPSRKKLIAAHKTEEEIRQFLGVDKLLYQTQENLIEAVSR
                     RGQYDMSKPCMACMDGKYICGQITEEKIKLLEKKRLTENDQETEIGEMS"
     gene            8280..9599
                     /gene="purD"
                     /locus_tag="JBH85_08640"
     CDS             8280..9599
                     /gene="purD"
                     /locus_tag="JBH85_08640"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HAU0946267.1"
                     /translation="MINILIVGSGAREHAIATALSKSENKPKIYCFGTTRNPGIQRLT
                     SDYWVGDITDPEQVNQQAKEWEINLAIIGPEAPLEHAVADALWDCGIPVIGPRKNLAK
                     IETSKAFARELMEKYGIPGLPKYKVFTSLEGIGEFLSELGENNYVVKANGLMAGKGVK
                     VGGEHLLSFEEALNYCKEIFTHNQSLVIEEKLIGQEFSFMCFSDGISLVPMPIVQDHK
                     RAYEHDEGPNTGGMGSYSAADHSLPFLSPEDVRAAFEINQSVIKALMTEMSDKYIGIL
                     YGGFMATAHGVYVIEFNARFGDPEALNVLSLLESDFVKLCVAMANGNLQKESVRFLNQ
                     ATVCKYAVPDGYPDNPLRHVEIDISAVEPKDTLYLAAVNFKNGKLYATGSRTAAYVGI
                     ANTISEAEEIAEQQIKNIKGPLFHRKDIGTSPLINTRVEVMRRLRAL"
     gene            9596..10174
                     /locus_tag="JBH85_08645"
     CDS             9596..10174
                     /locus_tag="JBH85_08645"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HAU0946268.1"
                     /translation="MIRLGILGSTRGTNMLALVDAINEGTLKAKIELVISNKPDAIIL
                     ERAKSLGLNAQFVNPEGLNRIDFDKKVSDILINHQIDLIVLIGYMRILSADFVNKWNN
                     QVINVHPSLLPAFAGKMDMDVHQAVLDSGLKETGCTIHFVTEEVDAGPVILQKKCPVL
                     EGDTAQTLKARVQQLEGIALVDAINLIASKGL"
     gene            complement(10171..12300)
                     /locus_tag="JBH85_08650"
     CDS             complement(10171..12300)
                     /locus_tag="JBH85_08650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAU0946269.1"
                     /translation="MIDSMGYHFLTEGNGIIACYDMYPTQFHSIKDMINYLPVLKQMG
                     FNALWINPMQMPGDISGFFKTDKNNGVKTGNEVTRSLYAMSHPLLFNPQFSLGSPEDP
                     MGTTQRLNSEALQLFTQNARNLGIVPMFDLVLNHVAIDSPLCQDKPHWFKGVHEDFKD
                     VRGFNYDDESIRKEIITEFWQPYIKRYMIEYGFDGVRVDAVGYVHPAVRSEIYAYIHS
                     LAAEYGKPKPVILDEALFSKRPLADEVNYLKLPGIGPTHITTEAYNVEFDLASADLPY
                     EITLEEQLKASVVFQQKDGTWRENTKGGCINFCGNHDYRSLAMTILFQMAKKRLESDA
                     FYNDLMSSYQDLYFKFNAEQEKPHELKEPLKTTLLYSYVDQIKKELEDNKDETTQEFK
                     TLVLEKLALSALTASGGWFLLSGDETCDITAKTVFQRKGAVDKSYYPQREHRIFSEKP
                     VIAHKILEKMAEENFFIENSENKWMQELYRSLSSFPEMQKRLLVSHIDNIKHQINAGI
                     DHVQEKFSRLLASENLNIGFTSQDFLENPRTHENGWLGLQNNFLFIKQLNTLLKRLPA
                     SLPGFSSELVRLPEKPHLIIIVRKNGNELNAPIDVVVVNLEQEKRQTLTKEDFQLIAK
                     NYCNQYFSKNRPSVCDSLREKLYSHVLKSAVNNRVHTDTSIKLNGIHLFEFKETSLNT
                     FFTIEKEKNYSHGNEDNTALTGNTISH"
     gene            complement(12392..13282)
                     /locus_tag="JBH85_08655"
     CDS             complement(12392..13282)
                     /locus_tag="JBH85_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1670 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946270.1"
                     /translation="MGSSYNDWLKSSYSELKKINIIENLIKENNFARAKMLLNNLDLT
                     TLIKYTELSKTITDFCEEAEQADIWRTHLQNFNEEHFSFEEYPPLTVSQLVKGIYFYG
                     QAAECREEEGKPFGDNELEFLKKSAYQHCFYAYNSLSTWAYEKYKMGLNDYSLLTLHY
                     AQKACQYHWTPGYLLFYKTCLNLAILSNAPSLSYQEALEALLIARKLSEHQYSISAIN
                     NAYFGKGLIHGNKTQIESWDKAISETIAKGKIPSTLLNKIYDKASEKAKGILDEFTVE
                     VKDMPEEEKLENEVAPTLSI"
BASE COUNT         4066 a         2306 c         2825 g         4133 t
ORIGIN      
        1 attaactatc aaggaagtaa tactatgaaa aaatcaacaa tggcagtagc cactctgtta
       61 gctgctttat caacagcacc tatggtttcc gtagcttatg ctgatgatac ttcaaataca
      121 acaacttcta gctgtactgg ttgtaaagga tgcaagggct gcaacggttg caaaggctgt
      181 ggcggttgtg gtggctgcgg tggttgcagt ggtgattaat aagtaatatt ttctataaag
      241 aggtagtgtt aactacctct ttttattacg gtttattttt taagtaatta tgaatagtca
      301 atcagatttt aacttaccca tattgtccag ctggtataaa aagaaatttc ttggttatgc
      361 ttcacaagtt cttgaagccc aacaaaaaat gacatccagt aaaggtaaaa atattctgca
      421 ctacacgctt agaaaaaagc gaaagcatga acgcatgagt cactatccta agggagacag
      481 gattgatcgt agtactggct cacaatattt ttatcattgc catagagaaa atttcgaaag
      541 taatgaacat ggtcattttc attgtttttt gcgatataaa catataccga agcgtattaa
      601 accagctcct ttagaggatt gggataaata catagataat cccatgactc accttgttgc
      661 gataggtatg aatcagtttg ggcaaccgat acgattattt acagtcaatc gttgggtaac
      721 atcagaaatt tggtatggtg ctgagcatat tccatatttc ctgaaatctt acaagatgac
      781 attaatagac gatccttatt ggcaagtatt agatcagtgg gtggaaggca tgctccattt
      841 gtttgctccc caaattgcct ggcttcatca ggagcgagat aaacgcattc agcttcacca
      901 actgaatagc ccaaatgata acccgtacac taaccatgag ctggaagagc tttctgagat
      961 aaatattgat ttgaaaaagc agattgagtg ggtaataagt taaattccaa aattagaacc
     1021 acaacttaat ttatcttaat tattggtttt tcattgctta taccccgtgt aaaaatatac
     1081 aatatctact gctttgggga gagattagtc ctttactgat caatcagaga ttaattctat
     1141 ctggtataga gattcatgca aaatcttact gaaacccttg atttttcttc tttgaatcgt
     1201 ggagaaattg aaaaattact gcgcgattat aatttaaatc tttctgtaga tgaggcgttg
     1261 actatacaga atgaattcct caaaagaccc ccgactattt cagagtgtgt actttggtct
     1321 attcaaggat cagaacattg ttcttataaa agcagccgta ttcatttaaa gcaattcaat
     1381 acctcaggcc ctcacgtgat actgggcgcc aaggaggatg caggtatagt atctgtagcc
     1441 caagataaaa atggttatag atatggcgtt attgtcagtc atgaatcaca taatcaccca
     1501 tctcaaattg ttccctatga aggcgcagct accggagttg gtggtaatgt ccgtgatgtc
     1561 tgttgtatgg gtggggaagt tatagcagta gcagacagtt tgcgtttcgg agatatcaaa
     1621 cgtgcacgta ctcactggat acaggaaggg gtggtttcag gtattgccgg gtatggcaat
     1681 cctttgggaa taccgaatat agctggtgat gtgtactatg atccggccta caatgaaaat
     1741 tgtttggtta ctgtagtcac tctggggata gtaagagagg atcatattat acattcttat
     1801 gctccgcccg aagctgagaa ctatgttttt attttagtag gtaagccaac tgataatagt
     1861 gggtttggcg gcgcgagctt tgcctcaaca gtattggaag aagattcaca agaaaagaat
     1921 aagggagctg ttcaagagcc caatgctttt ttacagagac atctccttaa agctaattat
     1981 tcattatttc aattactaag agaaaagaat ttaattgaca aggtaggctt taaagattta
     2041 ggagcaggtg gcgtggcctg cgcaagtatc gagttggctg aagccggcgg ttcttatggc
     2101 gccgaaattg atctggacaa ggtacccaca ggaatgccag gattaatgcc ttcagtcatt
     2161 ctatgctctg aaactcagga gcgttttatg tgggttgttc cccctgattt agtagatact
     2221 atcctgaaac actataatga aaccttcgcg ttaccacagg tttctgaagg ggcatgcgct
     2281 gcagttatcg gcaaaattcg taccgatgga ttatacgtgg tgaattacaa agggcgagaa
     2341 cttgtgagag ctaaagtccc tgatgtcacg aaaggcattg tttataacag gccacatgcc
     2401 tcttcgcaga agcaaaacac agaaccagtt tttctcccac cagatgatta taatcaaatt
     2461 ttgttgcagt tattggccca tgagaatata gcgagcaagg aacctatttt tgaaatgtat
     2521 gacaagcaag tgcagggtcg caccctcata caagcaggat gggctgatgc tggagtatta
     2581 caaccattta atgaatcgaa gtatcctgag gaaattcgta aaacaggtat tgccttgtct
     2641 ttagatcaaa atccccgcta taacaaaatt gatgcctatt ggggagctgt taacgcggtt
     2701 gtcgaatcgg tacggaacat cactgcagtt ggagctactc cagtcgcaat aacagattgc
     2761 ttgtgttttg gtaatccgga aaagccagaa caaatgcgcg aatttgttga ttctgtgcga
     2821 ggaattagtg atgcctgtgc cgctgttcat ctgaaagatc atccccaatc aactttgcct
     2881 gtcattgccg ggaatgtctc attgtataat gaatcagtga aaggggctat tcctcccagc
     2941 cccatgatta gttgcctggg aacgcttcca gatattgatt ttgctattac ctttgatttt
     3001 aagaaaagtg atagcctatt gatattgatt ggagagcgta aagacgaatg tggtggtagc
     3061 gtttattatc aactccataa tgaattgggt tctaatgttc caaaaccgga tttaagcttg
     3121 tttaatagag aaatccatgc tgtttcatcg gcaattcagc atgggttggt taacgctgct
     3181 catgatgtct cagagggagg ggttgctgtt gctcttgctg agatgagttt taagaactcc
     3241 ctgggagttg ctgtacagat taatggagag ttatctgcgg acaaactttt atttggagag
     3301 acaggcggtt ttattcttga aatcgataaa caacataaag ccgcttttga caaactggtt
     3361 actcaatatc aagtccctta catggttatc ggacatacta cagagcagcc agttttacag
     3421 atgaattcgg ttatcaactt gcctgtcgaa gaagcgaggc aggcttggga aaatggctta
     3481 agagagaggc tattataatg tctactatca attacaaatc agcgggtgtc gatatcgagg
     3541 cgggaaatga agctgtcgca cgcattaaac gtaatgttga aaaaacattt tcgcctcaag
     3601 tcctgacagg aatcggtagt tttggcgcaa tgtatgattt gaagcctttt atggaaaaat
     3661 tcaaacaccc cgtcatggtt caaagcattg atggcgtagg cacgaagaca atagttgctc
     3721 ggatgatgca aaaatttgat acaatcggaa ttgatttggt cagtgcgacc accaacgata
     3781 ttattgtgtt gggtgcaagg ccattaacac ttttggacta tatagcaact gatcgattga
     3841 aacctgaata tattgaagaa attattattg gcatgacgca agcttgcctc gaaaataata
     3901 tttccctggt cggtggtgag acggctgaaa tgcctgatac ctatctgaag ggagagcatg
     3961 atttggtagg tattatcact ggtgtagtgg aaaaggatga agccatacta ggaaaagata
     4021 taactccagg cgattcagtc ttggcatttc cttccagtgg cttacatacc aatggatatt
     4081 cacttgccag aaaacttttg tttgaactag gtggatatac tgtagaatcc caacttgacg
     4141 agttggatgc tacagttggt gaggctttac tggtacctca tatcaattat acaaatcctg
     4201 ttctacacct gttgaataac aaaatcccta tcaagggaat ggctcatatt actggcggag
     4261 gtgtactgga aaacattccg cgagtattac ctaatcattg ttccgttgaa atcaataaga
     4321 attcatgtcc ggtgttgccg atctttaatg tgctaaaagc attggggaaa ctggatgatc
     4381 aggaaatgta tcgtactttt aatatgggaa taggattagt aatgatagct tcccctggtg
     4441 ttgtttctga aatttataca gcgctaaaag aattccctaa tttccctgtt tatgaagtag
     4501 gaaaagtcgt atcaggaaaa ccagaagtga gattattgtg atgaagattg cagttgttca
     4561 gtttccaggc tccaattgcg aacgtgagac aatgcttgcg gtgcaacgag caggtatgac
     4621 tccagttgag tttctgtgga atgattcatc acaaaaactg cgagaaatgg atggttatat
     4681 tattattggt ggtttttcat atgaggatag atcaagagca ggaattattg cagcccttga
     4741 tccggtaatg aaagaaataa aattgcagag tgaattggga aaacctgttc ttggtatttg
     4801 caatggagca cagatccttg ttgaaacagg cctcgttcct ggtttaaaaa actatcaaat
     4861 tggtatggct ctgactgaga ataagcgaat tcaggatgga aaaattttag gaacaggatt
     4921 ttataacagc tggattcata tgcgaaccgg tgaccgagtg aggcaaaatg cattcacccg
     4981 ctatttatca aaggattctg tattatcaat tcctgctgcc catgctgaag ggcgttttgt
     5041 gatgcctgtt aaattattgc aagaaattga agaagaaggt ttaaatgcgt ttcaatattg
     5101 tgatgcgcag ggaaacagag atgataattt ccccgttaat cctaatggtt ctctacggaa
     5161 tattgccgct attattaata aagcgggtaa tgtcatggcc ataatgcctc accctgaacg
     5221 tacatttgcg ggagatccta tattccattc aatgaaagaa tatattaagg agaaaaaaac
     5281 attcaagcag caaacattat cttatcaacc ggagccagtt aaaataattc cttatgacaa
     5341 aaaagacaat gcccatgagt tgattgttaa attgattatt accgataatg ctgctttaac
     5401 agtacaaaat acgctaagac agttaggtat accagtcaca gttaatcgta tgatgtattg
     5461 gcatgtcgat acaaattttc ctgaaacaat cgaaaaaata aagcagacag gggttttata
     5521 taatgatcgg aaagagtatt tggtaacgtc tgagcatata ttttcatcag cagccaaggc
     5581 ttttttggtt aaatcaaaag acgatatgat cgggcaacag aagctgcaaa tgcttcggga
     5641 tcatttctca attgatggcg ttgatgccat acaccatggt gttttgtgga tgtttagcag
     5701 tgaaaatgtt aaaatacaag aattggcaga atccatttta gctactaata ttatctttaa
     5761 ccctaatgct catatctgct atgaatacca atgtccctag tcaagaggat cttcttgctg
     5821 cgttgccttt ttgcttaacc gaaacctctt tacctttcgg caaaaagtat aaagggaaag
     5881 taagggatac ctatgatctc ggcgatcaat tgattttggt aactacagat agacaaagtg
     5941 cctttgatcg atgccttgct gctgtacctt ataaaggaca agtattgaat ttgacttcag
     6001 catggtggtt taaaaacacg caatcgattg tgcctaacca tttaattgcc gtacctgatc
     6061 ccaatgtggc gatagccaaa aaatgcaaaa tattccctat tgaatttgtt gttcgtgggt
     6121 atatttcggg gagtacaagt acgtctttat ggacgcaata ccaaaaagga gttcgtgagt
     6181 actgtggtat aacgtttcct gatggattaa gaaaaaatca aaaacttgag agcccagtga
     6241 taacccccac tactaaagag acgctccatg acaggccgat tagcccacac gaaatcgtcg
     6301 cagaaggctg gatgacccaa gaagattggg atgaaaccag cagttatgct ttaaagttat
     6361 ttcaacatgg aatggaagta gcacagcaac atggtttgat tttggtggat accaaatatg
     6421 aatttggccg tgatgcggaa ggaagaattg tattagtgga tgaaattcat actccagatt
     6481 ccagtcgtta ttggttattt aacggttatc aagagcgatt tgatgccggt aaggagcctg
     6541 agaatataga taaagaattt ttgcgcttgt ggtttgttga tcactgcgat ccttataagg
     6601 atgaagtatt acctcaagca ccacaggagt taattgttac tttagcatca agatatatcc
     6661 aattatatga aatgattaca ggtgaatcgt ttgtgtatga cagtaatcct gggccagtaa
     6721 atgataggat tttgcataat atacaacgtt ggttaggtta atttttagcc gggggaaagg
     6781 cttatgtgtg gcattgtagg aatttacagt catgaacccg ttgctgctga gctttatgat
     6841 agcttgattc atttacagca ccgggggcaa gatgcctcag gtattttaac cggagctgat
     6901 cgtttttact tcaaacatgg acttggactg gtcagagagt ctattttctc tgaagatatt
     6961 cttaaactga aggggaatat cggcattgct catgtgcgtt atcccacggc cggaggttat
     7021 agtgaagcgg atgttcagcc tctttggata gggagccctc gcggtatagc tttggctcat
     7081 aatggaaatt tagtgaatta tggagagttg gttgatgatt tatgcggaaa acagcatagg
     7141 catttaaact ctactcttga ttctgaggca cttttattac ttctggcaga ctatttagcc
     7201 aagggatctt attccgatca tgatgaagag caattctttc aattactatg tatggcagtt
     7261 aatgaaatac atcaacgagt tcagggttcc tattctgttg tgagtttagt aattggcaaa
     7321 ggtttggttg catttaggga tccgcatggt atccgtcctt tagtttgggg tgagcgagtc
     7381 catgaaaatg gtagtaaaga ttatattttt gcttcagaaa ccaccccttt ttatgcttta
     7441 ggttttgagc ccaagggtga tttgcagccc ggtgaagttg cttacgtgaa tcagcaagga
     7501 caattgtaca gaaaagtgct ttcatcaaaa aaatttaccc cttgtatatt tgaatacgtt
     7561 tacttcgcca gaccagatgc cacattagac gatgtgagcg tttatcgagc cagattacgt
     7621 atggggcaaa atttagctaa aagctggaaa aagagatttc cagatacact acctgatgtg
     7681 gtgattccag ccccttcaac agcaaatact gccgcattag cttttgcaaa tgagttggga
     7741 atacgttatt ccgaaggttt atataaaaat ccttttattg gacgtacttt tattatgcct
     7801 aatcaggagt cgcgatcaag acaggttcgt tataaattaa ctcctcagaa aacggaaatt
     7861 aataaaaaaa aggtattaat cgttgatgac agtatcgtaa ggggaactac ctcacgcgaa
     7921 atagtcagaa tgatacgaga atatggtgca tcagaaatat attttgtatc aacctgtcca
     7981 ccaattaaaa acccttgttt ctacgggatt gatatcccat cgcgtaaaaa attgatagca
     8041 gcccataaaa cggaagagga aatccgtcaa tttctagggg tggataaatt attataccaa
     8101 actcaggaaa accttataga ggctgtgtct cgcagggggc aatatgacat gagcaagcct
     8161 tgtatggctt gtatggatgg taaatacatt tgtggacaga ttactgaaga aaaaattaaa
     8221 ttgttggaga aaaaaagatt aaccgagaat gaccaagaaa cagagatagg agagatgtct
     8281 tgatcaatat ccttattgtt ggttcaggtg cgcgtgagca tgcaatagct acagcattga
     8341 gtaaatcaga gaataaacca aagatttatt gctttggaac aactcgtaat cctggtatcc
     8401 aaagactcac ctcagattat tgggtaggtg atattacaga ccctgagcaa gttaaccagc
     8461 aagcaaaaga atgggaaatt aatttggcca ttattggtcc agaagcgcct ttggaacatg
     8521 ctgttgctga tgctttgtgg gattgtggaa ttcctgttat aggccccagg aaaaatttgg
     8581 ctaaaattga aaccagtaaa gcgttcgcca gagagttgat ggaaaaatac ggtattccag
     8641 gtttgcctaa gtataaagta tttaccagtt tagagggaat aggggagttt ttatcagagt
     8701 taggtgaaaa taattacgtt gttaaggcca atggtttaat ggcgggcaag ggtgtaaaag
     8761 taggtggaga acatctgttg tcatttgaag aggctttaaa ctattgtaaa gaaattttta
     8821 ctcataatca gtctttagtc attgaagaaa aattaatagg tcaagaattt tcatttatgt
     8881 gtttttctga tggcatctca ttagttccaa tgcctattgt gcaagatcat aaacgagctt
     8941 atgagcatga tgagggtcct aatacaggtg gtatggggag ttattcagcg gcagatcaca
     9001 gcttgccatt tttgtctcca gaggatgttc gtgctgcttt tgaaattaat caatcagtaa
     9061 tcaaagcgct tatgacggaa atgtctgata aatacatagg aatactttat ggcggattta
     9121 tggccaccgc acatggggtg tatgtgattg agtttaatgc tcgctttgga gatcctgagg
     9181 ctcttaacgt gcttagcttg ttggaatctg attttgttaa attatgtgtt gcgatggcta
     9241 acggcaattt acaaaaagaa tccgttcgct ttttgaatca agccacagtt tgtaaatacg
     9301 ctgtccctga tggttatcct gataatccat tgcgccatgt tgaaattgat atttctgctg
     9361 tcgaacctaa agatactcta tatttggctg cagtgaattt taagaatggc aaactctatg
     9421 ccacaggttc gaggacagcc gcttatgtcg gtatagcgaa tactatcagt gaggcagaag
     9481 aaattgctga acaacagata aaaaatataa aaggcccttt atttcacaga aaagatattg
     9541 gcacatcgcc tttaattaat acacgcgttg aagtaatgcg taggttgcgt gccttatgat
     9601 tcgtttagga atattaggat cgactcgtgg aaccaatatg ttggctcttg ttgatgcaat
     9661 caatgaggga actcttaagg caaagataga gcttgttatt agtaataaac ccgatgccat
     9721 tattctggaa agagccaaat cgttgggttt gaatgcacag tttgtcaatc ctgagggatt
     9781 aaacagaatt gattttgata aaaaagtaag tgacatactg atcaaccatc agattgattt
     9841 gattgttttg attgggtaca tgagaatttt gtcggcggat ttcgtaaata aatggaataa
     9901 tcaggtaatt aatgtacatc cctctttatt gccagcattt gcagggaaaa tggatatgga
     9961 tgtacatcaa gctgttcttg attccggcct aaaggaaaca ggttgtacta tccattttgt
    10021 caccgaagag gtagatgcgg gtcctgttat tttgcaaaaa aaatgccctg ttttagaagg
    10081 agatactgct caaaccttaa aagcaagggt gcagcagttg gaaggaatag ctttggtaga
    10141 tgcaattaac ctgattgcat cgaaaggtct ctaatgcgag attgtatttc cagtcaaagc
    10201 agtattgtct tcatttccat gagaatagtt tttttctttt tcaattgtaa aaaaagtgtt
    10261 taacgaagtt tctttaaact caaataaatg gattccattc agtttaatac tggtgtctgt
    10321 atggactcga ttatttacag cagattttaa aacatgggaa tataattttt cgcgtaaact
    10381 atcgcaaaca ctcggtctat ttttagaaaa atattgatta caatagtttt tggcaattaa
    10441 ttgaaaatct tctttagtta atgtttgtcg tttttcctgt tcaaggttaa caacaacaac
    10501 atcaattgga gcatttaatt cattaccatt ttttcttacg ataataatga gatgcggttt
    10561 ttcagggagt cgaaccaact cactggagaa tccgggtagt gatgcaggta gtctttttaa
    10621 taatgtattt aattgtttga taaatagaaa attattctgt aatccaagcc atccattttc
    10681 gtgggttctt ggattctcta aaaaatcttg agatgtgaaa cctatattta aattttcact
    10741 ggcaagtagc ctggaaaatt tttcttgtac atgatctatg ccggcattta tttggtgttt
    10801 aatattatca atatgagata ctaaaagacg tttttgcatt tcaggaaaac ttgataaact
    10861 tctgtaaagt tcctgcatcc acttattttc cgagttttct atgaagaaat tctcttctgc
    10921 cattttttct aaaattttgt gagcaataac tggtttttca ctaaaaatac gatgttcacg
    10981 ttgtgggtaa taagatttat caacagcacc ttttctctga aatactgttt ttgcagtgat
    11041 atcgcatgtt tcatcaccag ataataaaaa ccatccgcca ctggctgtaa gagcggataa
    11101 agccagtttt tctaatacca gagttttaaa ttcttgtgtt gtttcatctt tattatcttc
    11161 caactccttt ttgatttgat caacataaga gtaaagtaag gttgttttca aaggctcctt
    11221 gagttcatgt ggtttttctt gctcggcgtt aaacttaaag tacaagtctt gataggaaga
    11281 cattaagtca ttataaaaag cgtcagattc cagtcttttt ttggccattt gaaataaaat
    11341 agtcatcgcc aatgagcgat agtcatgatt cccacaaaaa ttaatgcagc cccccttcgt
    11401 gttttcacgc catgttccat ctttttgttg gaagactaca ctcgccttta actgctcttc
    11461 caatgttatt tcataaggca gatcagcgct ggcaagatca aattcaacat tataagcttc
    11521 tgtagtgatg tgagttgggc ctatgccggg taatttcaaa taatttactt catccgcaag
    11581 tggtcgttta ctaaataaag cttcatcaag gataaccggc tttggtttac catattcagc
    11641 agcaagagag tgaatatagg catatatttc acttcttact gcaggatgta cataacctac
    11701 agcatcgact cgaacaccat caaaaccgta ctcgatcatg taacgtttga tataaggttg
    11761 ccaaaattcg gttattattt cttttcttat gctttcatca tcgtaattga agccgcgaac
    11821 atctttgaag tcttcatgaa ctcctttgaa ccaatgaggc ttatcctgac acaagggaga
    11881 atcaatggcg acatgattta aaaccagatc aaacattgga actattccga ggttccttgc
    11941 attttgagtg aataactgta aagcttctga gtttaatcgt tgggttgtcc ccatggggtc
    12001 ttcaggggag cccaaactga attgaggatt aaataataac gggtgactca tggcatataa
    12061 gcttctagtg acctcatttc ctgtttttac accattattt ttatccgttt taaaaaagcc
    12121 gctaatgtca ccgggcattt gcatgggatt aatccataag gcattaaacc ccatctgctt
    12181 taagacaggc aaataattaa tcatgtcctt aatagaatga aactgagttg ggtacatgtc
    12241 ataacatgca ataatcccat ttccttctgt taaaaaatga tatcccatag aatcgatcac
    12301 cgtagaaaat tattaaacta caaaactgag aaaaatcgaa ttgttggtta caactccact
    12361 tttatcagtc gaatcgcttg ttattatagc gttaaataga caaagtagga gctacttcat
    12421 tttccaattt ttcttcttct ggcatatctt ttacttcgac tgtgaactca tccaatatcc
    12481 ctttggcttt ttcagatgct ttatcgtaaa ttttattaag cagagtagag gggattttgc
    12541 ctttggcaat agtttctgat attgctttat cccaagactc tatctgcgtt ttattgccat
    12601 gaatcaggcc cttgccaaag taggcattat tgatagcact tatagaatat tggtgctcag
    12661 ataactttcg ggcaatcaag agcgcttcta atgcctcctg gtaagataaa gaaggggcgt
    12721 tcgataaaat ggctaaattt aaacaagtct tataaaataa taaatatcct ggagtccaat
    12781 gatattgaca ggccttttga gcatagtgca aggttaacaa agaataatca ttcaaaccca
    12841 ttttgtattt ttcataagcc caggttgata aagagttata agcataaaaa cagtgttgat
    12901 aagcgctctt tttaagaaac tccaattcat tatcaccaaa tggtttacct tcttcttccc
    12961 ggcattcagc tgcttgtcca taaaaataga tcccttttac taattgggac actgtgagtg
    13021 gcgggtattc ttcaaatgaa aaatgttctt cattaaaatt ttgcagatga gtccgccaaa
    13081 tatcagcttg ctctgcttct tcacaaaaat ctgtaattgt tttacttaat tcggtgtatt
    13141 taatgagggt agtgagatca agattattta agagcatttt tgccctggca aaattgtttt
    13201 cttttatcag attttcgatg atgtttattt tctttaattc gctatatgac gatttcagcc
    13261 aatcattata ggagctaccc ataaatcctc cacaaaattt ttaagttcaa gacatgttag
    13321 agaataaagt
//
LOCUS       DACVWI010000085        13290 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.085, whole genome shotgun sequence.
ACCESSION   DACVWI010000085 DACVWI010000000
VERSION     DACVWI010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13290
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.085"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            227..670
                     /locus_tag="JBH85_08660"
     CDS             227..670
                     /locus_tag="JBH85_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946271.1"
                     /translation="MFFDDTYLDYKARVSYSLFCAKDFNETAAFIKANRILMTSTELA
                     AYMLKPENYKYAIIARIKNSMVGIVLFTDFESEVFINHLYVSPIHRFKGIGSNLLKEL
                     KAFMGQRTVSYIDTSNNYMPWMEVLDVSKKAAVINQLGSFYKCSK"
     gene            1210..1923
                     /locus_tag="JBH85_08665"
     CDS             1210..1923
                     /locus_tag="JBH85_08665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HAU0946272.1"
                     /translation="MTIYMFNNVNLQRQYMIDTIIFDFDGVILNSEPMHFEAIVQVLN
                     QSGINLAYEEYMTHYLGLSDISLFPKILNDKGLAFSSTEIHQVIERKVRVYNELIENS
                     EQLPMTPDLDWFLVRVARQYGKIGICSGSNRHSIIKILEKIHCGRLACYFKTIVSCED
                     VSLGKPSPEGYLLAAHRLQSKPENCLVIEDSEHGVAAAKAGGMLVAGLLTTLSRDLLA
                     NADMIVHDFKELDHLLNSH"
     gene            2396..5110
                     /locus_tag="JBH85_08670"
     CDS             2396..5110
                     /locus_tag="JBH85_08670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HAU0946273.1"
                     /translation="MVQRMDAMVLQWHEKTLQDIVSQFKADLVLGLTEAEAVRRLKEV
                     GPNLLDKQKRTSPLVIFLQQFSNIIIWVLLGAVVVSFLLGEKADAIAIFAIVILNAII
                     GFALEYRADRAILALQQMAAPKATVLRDGYAKLIAASDIVPGDVILFESGDLIAADAR
                     LFEFSALKVNEAPLTGESLPVAKNLDLCTKDTSLADRKNMVFMGTAVVNGTGRALVIA
                     TGMQTEMGRIAQLLGEASRDKTPLQKKLNQVGSRLLWVCFFIVMAIFGLGLLRNIPIF
                     NLFMSSVSLAVAAIPEGLPAVVTVALALGVQRMVRRAVLVRRLSAVETLGYLQVICTD
                     KTGTLTVGEMTARKFVTASDVYSIYGEGYNLAGKFSLQGQEINVSEDKLLQASLQAMV
                     SCNNAEFRQQNGQMTVAGDPTEVALLVAAAKGGFWRSELQISNPRIKELPFSSERKRM
                     TVVCQYDNDELMVYVKGAPEIVLERCTHILTKTGIKKLTLNDKARMRQSCEFMASEAL
                     RILAFAQRPLDTSWLDKEIEEIESNLVFLGLIGLQDPPHSSAKESVSRCKKAGIKLVM
                     ITGDHPVTARAIAQELGILSEGDQLLTGNELENISEEEFNSCVKDIAVYARVTAEHKL
                     KIVRAWKKQNRVVAMTGDGVNDAPALKEASIGIAMGKTGASVTKEASDIIVMDNNFTS
                     IVAGIEEGRTIYDNIIKTLIYLLAGNSAELLVVFVALLIGWPLPLLPIQLLWINLVTD
                     GLPAIGLATDRSEPGILNRPARTIQKSMMDGTFLKRVSFIGCVTAVVTLIVFAYEYLA
                     YKDLTQAQDAAFSILVTARLLIAFGTRSDTKTIFQLGFFSNLHLFIIISISFSLQVLI
                     HHIPVLRDLFGIGQISFTQCISWILIGTLPLLVIEAQKWLRKAPGETF"
     gene            5094..6353
                     /locus_tag="JBH85_08675"
     CDS             5094..6353
                     /locus_tag="JBH85_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0946274.1"
                     /translation="MVRHFSVRKIIWIVLLSFCFTESFIYAKPNPGLSQLIEEAKQNN
                     PQIRAARDRLLAAIHVIPQAKALPDPKVNAGYINMSENIPMDVDPRREQMLGGQQEIP
                     FLGKLVVRGRIATLEAKRAEAEYQATCFAVIAELKQLYYDLYFVNKSLEIVQRNQELL
                     HEMEKSAEANYSVGKTPQQDIYRAQTEISRLLMRLVILKQQRESLQADINRLLNRSLE
                     ITVNTPAILSLTPMSHHLDYFYSLIKQRAPQLIMQRRNVQKGRQSIRLSKMEYFPDVE
                     IEGGRLHDTGMHTKGYQVLLKATVPLYFMQKQNNAVRESIARYSADMEDLQTTYRALS
                     FQVKNAYLLAERSAKLIHLIQHTIIPQATLTFTSSQANYGVGKVDFLTMLNNLLTLQE
                     NELEWHGELAEHEKAITQIEAITGTYL"
     gene            6350..7486
                     /locus_tag="JBH85_08680"
     CDS             6350..7486
                     /locus_tag="JBH85_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0946275.1"
                     /translation="MNNKVMIKSMFVLSLLSLLPLITYAQNTTDMHGKMDMKQPTQKN
                     EIVIDPVRLQAIGITSEPVRRQNIEKTIRTVGRVAVDERRVAHIHVRFDGWIEKLFIN
                     FTGEKVKAGQALFTVYSPDLVSTQQEYLLALNAQKILSQNTTSIAAQGAKDAFQAAHQ
                     RLLLWGISEKDIEQLKHTGKITRTMTIHSPIKGTVLKKMAFIGMRIEPGDELYTIADL
                     SHLWVLGDIYEYELPYIRLGQTADLTITYLPNELFKAKLDFIYPTIDLKTRTVKVRFE
                     VNNQKEQLKPGMYVNLELKIPFGERLVVPKNAVLLTGERAVVFIYHGKGKIEWRDVTL
                     GVRAGDLLEIVQGVKEGDEIITSANFLIDSESQLKAAMGGMQHK"
     gene            7525..10653
                     /locus_tag="JBH85_08685"
     CDS             7525..10653
                     /locus_tag="JBH85_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HAU0946276.1"
                     /translation="MVERIIEFCVRNRFIVLLFIFGFSFMGYMALKNTRMDALPDISD
                     TQVIVYTTWMGRSPDLIEDQVTYPIVTALLSAPKVVAVRGFSDFGFSYVYIIFEDGTD
                     IYWARSRVLEYMSQLAGKLPEGVTPQLGPDATPVGWIYQYALVDENGKHNLADLRTFQ
                     DWYLRYWLRSVPGVSEVASVGGFVKQYQINLDPVKVLAYNLSVPDIIEKIRMSNNDTG
                     GRVLELSGVEYMIRGRGYIKSTDDIEKIAIGTNTNGTPILLRDVATVQLGSDMRRGVV
                     ELNGQGETVGGIVIMRFGEDVLQVISHIKEKLKELRAAIPEGMKIVNVYDRSNLIREA
                     ISTVNWNLIEELVVVGLLIIVFLGHFRSALIPIITLPLAILISFIPIYFLGIGLNIMS
                     IGGIIVAIGDMVDAAIIMVDNAHKRIADWEMKGCSGDRTQVLIDSAKEVGPAIFSSLL
                     VIAISFMPVFTLEAQEGRLFSPLAYTKNLAIFMSALLAITLIPMLLPLLVRGRIIPEQ
                     KHPITRFMQKMYAPVLRLALRYRKFVMGIAVVAALSIIPLYKLIGSEFMPPLYEGTIL
                     YMPVTLPGISVTQATSLLQEMDKRLKTFPEVAHVFGKTGRAETSTDPSPFNMMEVIVE
                     LKPKEFWRKGMTYESLVAEMDKALQFPGVSNAWTMPIKARNDMLTTGIRTAVGIKIFG
                     PDIKKIEAIGKEIEMVAKGVLGTSNVYAERVAGGYFLDFQINRDQLARYGLTIMDVNR
                     IIESAVGGENIATTIEGRERYPVNVRYLRELRDDPDKINRILVKTPSGAEVPIAQLVT
                     LTFRSGPAMIRDENAMLAGYVFIDISGRDIGGYVEELKQVVKAKVKLPPGYTLAWSGQ
                     YEFMQRVYERLKIFVPLTLVIIFVLFYFTFRTITETLMVMLGVPFALFGGFLLLYVLG
                     YNMSIAVWVGMIALAGVAAETSAVMLAYLDSDYNKQKEKGLLKTLPDLIQMVQQCAVS
                     RIRPMVMAGLANILGLLPVMWATGIGADVMKRLAAPMVGGVFSALLLTLIVIPVVYVI
                     WRWQADLRKQTH"
     gene            11046..12833
                     /locus_tag="JBH85_08690"
     CDS             11046..12833
                     /locus_tag="JBH85_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAU0946277.1"
                     /translation="MNGLEKQCCPKDVILTQQEKASESLSVCCAPSILGASDSFFSFF
                     HKLFQANLAKMTLGISPAALGSSYSTWLWQLAQSPEVLWELALYPFLHANDCINNIIC
                     VERAADGKDVRFKKDSWQPMPWRLLAEGFLQVEDWWRRATNIPGLPRQVERTVSFWVR
                     QCLDSVSPSNFVWSNPDLFHEAIRTNGLNLLKGSQIAMEDWLEKLTGAPPTGSENFIP
                     GKDVAVTAGRVVFQNHLIELIQYEAQTKTVYKEPILILPAWIMKYYILDLSPHNSLVK
                     WLVKQGHTVFIISWRNPDKEDCDLGMDDYYRLGAMAAIDMVSTILPETKINLMGYCLG
                     GTLAMITASMMGRYEDERLNCLTLLAAQGDFSEAGELMLFVNESQVDFLKSMMWEQGY
                     LDTKQMAGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLE
                     KLFLNNDFAEGRYMVEGKSVAAENIQCPIFAVSTKKDHVAPWQSVYKIHLMTEENVTF
                     VLTGGGHNAGIISEPGHSGHAYHVHERKKGDAYLNPTNWLEIAEKREGSWWREWHDWL
                     VQQSTKKRILPPVLNTSLPSAPGTYVLQK"
BASE COUNT         3878 a         2368 c         2964 g         4080 t
ORIGIN      
        1 atttgtcaga cattataaaa tttttaggct taaataagtc aaaaatgaag tgagataaat
       61 taagacattc tatttttctc taaagaaatt aactccctta atagtgattt aggggcagct
      121 cctgatgaac tacgatgaaa tccgggtttt ttgaatcact catgctgtac atttggcggg
      181 ttatgtattt aaatatatgc catctagacc tctaatatag caatttatgt tttttgatga
      241 cacttatttg gattataaag ccagagttag ttactctttg ttttgcgcta aagattttaa
      301 tgaaacagct gcttttatca aggctaatcg aattttaatg actagcaccg agttagctgc
      361 ttatatgctg aaaccagaaa attataaata tgccattatt gctagaataa agaatagcat
      421 ggtgggcatt gtcttattca cggattttga atcggaagta ttcattaatc atctttatgt
      481 aagtcctata catcgtttta aagggatcgg ctcaaattta ttgaaagaat taaaagcttt
      541 tatgggacaa agaacagtct cttatataga tacaagtaac aactatatgc cttggatgga
      601 ggttttggat gtttccaaga aagctgcagt cattaatcaa ttaggatcat tttataaatg
      661 tagtaagtga cagccacagt aatcttactg ccccttataa aagcatattc gactttacca
      721 tcaagagatt taattgtttg taaattcatt tgcataatgt tttggatggc tatttcaatt
      781 tcaaactaaa tttcttgcct cgactgaagt tttcttttgt aagttttcta tgctttactt
      841 aactcatgta agaatcattg cgtgtattaa agagcagtag ctgattcaca agattttggc
      901 gtacatgaat caacagcaaa aagcgccggc atcaattaaa gcattaggta ttcgtacacc
      961 accaaccaag gcagttagcc aaatgacact ataagcaaag agtaaaaggc catgaaatca
     1021 ttatgaggct tgttgtcaac ttttaagctc tctttacttt tgaaaaacag gaaataggtg
     1081 gtttaaaaaa tcctatacca cttttgatta agcagaccaa tacaagcaat tttaagaata
     1141 gttgtctaaa ataaaatgaa atatcccttt tatcaagcgt ccagcatgaa agtaatttct
     1201 cttgggtaat tgacaatata tatgtttaac aatgtcaatc tacagaggca atacatgata
     1261 gatacaataa tctttgattt tgacggtgta atacttaata gtgaacccat gcattttgaa
     1321 gcgatagtcc aagtactgaa tcaatcaggg attaatcttg cttatgaaga atatatgact
     1381 cattaccttg ggttaagtga tatcagtttg tttcccaaaa tactgaatga taaggggctt
     1441 gcattctcct caactgaaat acatcaagtt atagaacgca aggtcagagt ttataatgag
     1501 ttaatcgaga acagtgagca attgcctatg actcctgatc tggattggtt tttagttcga
     1561 gtggctagac aatatggaaa aatcggtatc tgcagcggat ccaatcgcca ttccataata
     1621 aaaattcttg aaaaaattca ttgcggtcgc ttggcttgct attttaaaac cattgtaagt
     1681 tgtgaagatg taagcttggg taaaccatct ccagaaggtt atttgcttgc agcacatcgt
     1741 ttgcaatcca agcctgaaaa ctgtttggtt atagaggatt cggaacatgg tgtagcagct
     1801 gcgaaagcgg gaggaatgct ggttgcgggt ttactgacaa cactgagcag ggatctgttg
     1861 gccaatgcgg atatgattgt gcatgatttt aaagaactgg atcatttgtt gaactcccac
     1921 taaaaagaga caggttacac tgatttaggg tcagatcctg aactcttcaa ctgatattgt
     1981 attacgacaa aatcgcttga taattaaacc aacagtctcc caagtaaatc acagttttac
     2041 aactaaaccg aattttttaa tgttgatggg caaaattcat tatacggttc ttttagtaca
     2101 tcagtaaaaa tggcaagatt tctaagttca tctttgtgtg gctctggccc tgaactttat
     2161 gcaataaacc atagcacaag ttgattttct ctttaatctg ggaggttaaa aggtcggtaa
     2221 tgataaaata gagaatgatt gatttttttt caaaatggtg atgagaaagt acattgattt
     2281 gcctaaatcg gtcttgcgaa ttaaagtata ggaaatattg gttatttttt agaatgttct
     2341 cttgtatttt aaggtaatta tgtagaactt tttacctcat taaattaagg gaaagctggt
     2401 ccaaaggatg gatgcaatgg tactgcaatg gcacgaaaaa acgcttcagg atattgtttc
     2461 tcagtttaaa gcagatctgg ttttggggtt aaccgaggca gaagcggtac ggcgattaaa
     2521 agaagtaggg ccaaacctac tcgacaagca aaaaagaacg tcacctttgg ttattttttt
     2581 gcaacaattt agcaatataa tcatctgggt gcttttaggt gctgttgttg tttctttttt
     2641 actcggcgaa aaagctgatg ccattgccat ttttgccatt gtcattttaa atgccatcat
     2701 tggctttgct ttagaatatc gtgccgatcg ggcgatattg gctctgcagc aaatggctgc
     2761 tcctaaagca accgtgcttc gagatggcta tgcgaagctg attgcggctt ctgatatcgt
     2821 accaggtgat gttattcttt ttgaaagcgg agatttaatt gccgctgatg ctcgtctatt
     2881 cgaattttca gcccttaaag tcaatgaagc gccactcaca ggagaatccc tcccggttgc
     2941 taaaaatctg gatctttgta cgaaagacac ctctctagcc gatcgtaaaa atatggtgtt
     3001 tatgggaaca gctgttgtca atggaacggg acgtgctctt gtcatagcaa ccggcatgca
     3061 aactgaaatg ggtcgtattg cccagttact aggtgaagca tctcgtgata aaaccccttt
     3121 gcaaaaaaaa cttaatcaag tgggatctcg tttattatgg gtttgctttt tcattgttat
     3181 ggctattttt ggcttaggcc tcctgcgtaa tattcctatc ttcaatctgt ttatgagttc
     3241 agttagtctt gctgttgctg cgattcctga ggggttacct gctgtggtca cagtggcttt
     3301 agctctgggt gtgcaacgta tggtgcggcg tgctgtgctg gtaagacgat tatcggcagt
     3361 agaaacactt ggttatttac aagtcatttg cactgataaa acaggaactt taactgtggg
     3421 tgagatgaca gcacgtaaat ttgtgacagc aagcgatgta tatagtattt atggagaagg
     3481 ctataatctc gcaggaaaat tttcacttca aggccaagag attaatgttt cagaagacaa
     3541 gttattgcag gcctcattac aggctatggt atcctgcaat aatgctgaat ttagacaaca
     3601 aaatgggcaa atgacagtag ccggggatcc gactgaggtg gctcttttgg tcgcagcagc
     3661 taaaggaggt ttttggcgaa gtgaactaca aatttctaat cctcgcatta aggagttgcc
     3721 ttttagttcc gaacgcaaac gaatgacagt ggtttgtcaa tatgacaatg atgagctcat
     3781 ggtttacgta aaaggggctc cagaaattgt tttagaacgc tgcactcata ttttaacaaa
     3841 aactggtatt aaaaaattaa cgctgaatga taaagcgcgt atgaggcaat catgtgaatt
     3901 catggctagt gaggcattaa ggattttggc attcgcacaa cgtccattgg acacgtcatg
     3961 gctggataaa gaaattgagg agattgaaag caatctcgtt tttttaggtc tgattggact
     4021 gcaagaccca ccgcattcca gtgcaaagga atctgtttcc cgctgtaaaa aggcgggtat
     4081 caaactggtg atgattacag gagaccatcc tgttacagcg agagccattg ctcaagaact
     4141 tgggatatta agcgaaggtg atcaactcct tactggcaat gagcttgaaa acatatcaga
     4201 ggaagagttt aactcttgcg tcaaagacat tgcagtctat gctcgtgtga ctgcggagca
     4261 taaattaaaa atcgtacgtg cttggaaaaa acaaaataga gtagttgcga tgacaggtga
     4321 tggtgtgaat gatgcgcctg ctctaaaaga ggcttctatt ggtattgcga tgggaaaaac
     4381 aggagcttct gttaccaagg aagcttcaga cattattgtc atggataaca acttcacatc
     4441 aattgtagca gggattgaag aaggtcgaac gatttacgat aatattatca aaacactcat
     4501 ttatttatta gcaggtaaca gtgctgaatt gctggttgtt tttgtagcac ttttaatcgg
     4561 atggcccttg cctttgctcc ctattcaatt actatggatt aacttagtga ctgacggttt
     4621 gccagccatt ggtttagcaa ctgataggtc agaaccagga attttgaatc gcccagccag
     4681 aaccattcaa aaatccatga tggatggtac gtttctcaaa cgagtgagtt ttattggttg
     4741 tgtaacagct gtagtaactt taattgtttt tgcttatgag tatttagctt ataaggattt
     4801 aactcaagcg caagatgcag cattttccat attagtgaca gcaagacttt tgatagcatt
     4861 tggaactcgt agtgatacta agactatatt tcagctcggt tttttctcta atctgcattt
     4921 atttataatt attagcatta gtttttcact acaggtcttg attcatcata ttcccgtact
     4981 acgagatttg tttggtattg ggcaaatctc atttactcaa tgtatttcct ggatcttgat
     5041 aggcacgttg cctttgttag taattgaagc ccaaaaatgg ctaaggaaag cacctggtga
     5101 gacattttag tgttagaaaa attatttgga ttgttctcct gagtttctgc tttacggagt
     5161 cattcattta tgcaaagcct aatcctggtt tatcgcagtt aattgaggaa gctaagcaaa
     5221 acaatcccca aattcgtgca gcacgcgatc gtttacttgc cgcaattcat gtgatcccac
     5281 aagcgaaagc gttgcctgat cccaaggtga atgctggcta tatcaatatg tcagagaaca
     5341 ttcccatgga tgtagatcca agacgtgaac aaatgctggg tggccaacaa gaaattccct
     5401 ttcttggcaa gcttgttgta cgaggaagaa tagcaacgct tgaggctaaa cgggcagaag
     5461 cggaatatca agccacgtgt tttgctgtca ttgcggaact taaacagctt tattatgatc
     5521 tttactttgt caataaatct cttgaaatcg tacaaagaaa ccaagagctt ctccatgaaa
     5581 tggaaaaaag tgccgaagct aattacagtg tcggaaaaac acctcaacaa gatatttatc
     5641 gcgctcaaac cgaaatttct cgtcttctga tgcgcttggt tatcttaaag cagcaacggg
     5701 aatccttaca ggctgacatt aatcgtcttt taaatcgttc cttagaaatc acggtcaata
     5761 ctccagccat cctttctctg acaccaatga gtcatcattt ggattatttt tattcactga
     5821 ttaagcagcg agcacctcaa ttaataatgc aacggcgaaa tgttcaaaaa ggacgtcaat
     5881 ccatccgttt aagtaaaatg gagtatttcc ccgacgttga aatcgaaggt ggtcggcttc
     5941 acgatacggg aatgcacacc aaaggttatc aagtgttgtt aaaagcaacc gttccgcttt
     6001 atttcatgca aaagcaaaat aatgctgtgc gcgaatcaat tgctcgttac agtgctgata
     6061 tggaggattt gcagaccact tatcgcgcgc tttcttttca agtgaaaaat gcctatttat
     6121 tagcagagcg ctctgccaag cttattcatc tgattcaaca tactattatt ccgcaagcca
     6181 ctttaacgtt tacttcttct caggctaatt acggggttgg taaggtggat tttttaacca
     6241 tgcttaataa tttgttgacc ctgcaagaaa acgaattgga gtggcacggt gagcttgctg
     6301 agcatgagaa agcgattacg caaatcgaag caattacagg gacttatcta tgaataataa
     6361 ggtgatgata aagagtatgt ttgttttaag tttactgtct ttgctgccat taataaccta
     6421 tgcgcaaaat acaaccgata tgcatggtaa gatggacatg aaacagccta cacaaaaaaa
     6481 tgaaattgta attgacccag tccgcttaca agccattggc atcacctcag agccagtacg
     6541 ccgtcaaaac attgaaaaaa caattcgcac ggtaggacgg gttgcggtcg atgagcgtcg
     6601 ggttgcccat attcatgtgc gctttgatgg ttggatagag aaattattta tcaattttac
     6661 cggtgaaaaa gtaaaggcag ggcaagccct ttttacagtg tatagccctg acttggtttc
     6721 cacccaacaa gaatatttac ttgctctcaa tgcacaaaaa attttgagtc aaaatacgac
     6781 atccattgcc gcccaaggtg cgaaagatgc ttttcaagca gctcaccaaa gattattgtt
     6841 gtggggaatt tctgaaaagg atatagagca attaaaacat actggaaaaa taacaaggac
     6901 catgaccatt cattcaccga ttaaaggaac ggtgcttaaa aaaatggcgt ttatcggtat
     6961 gcgcatagag ccgggtgatg agttgtacac tattgctgat ttatcgcatt tgtgggtttt
     7021 aggggatatt tacgagtacg agcttcctta tatccgtctt ggtcaaacgg ctgatttgac
     7081 gatcacctat ttacccaatg aattatttaa agccaagctt gattttattt atcccactat
     7141 tgacctaaaa acacgtacag tcaaggtgcg ttttgaagtg aacaatcaaa aagaacaatt
     7201 aaagcctggc atgtacgtca atttggaact caaaatccct tttggtgaac gtcttgtagt
     7261 gcctaaaaat gccgttttac tcacgggtga acgagctgtg gtctttattt atcacggcaa
     7321 gggtaaaatt gaatggcgag acgttactct tggggtgcga gccggcgatt tgcttgaaat
     7381 agtccagggg gttaaggaag gagatgagat tatcacctcg gcaaactttt tgattgactc
     7441 agaaagtcag ttgaaagcgg ccatgggagg catgcagcat aaataataaa agggcatgat
     7501 ttgcctttgg aacaaaggga ttttatggtt gaacgaatta ttgaattttg tgtgcgcaat
     7561 cgttttattg tgttgctgtt catattcggg ttttctttta tgggctacat ggccttgaag
     7621 aatacccgca tggatgcatt acctgatatt tcagacacgc aggtgattgt ttatactact
     7681 tggatgggac gctccccgga ccttatagaa gatcaagtga cttatcctat tgtgacagca
     7741 ctgctgtcgg caccgaaagt ggttgctgtg cgaggatttt ctgatttcgg attttcttat
     7801 gtttatatca tttttgaaga cggtactgat atttattggg cgcgttcacg agtcttggag
     7861 tacatgagcc aactggcagg aaagttgcct gaaggggtga cgccgcaatt aggtcctgat
     7921 gctactcctg taggttggat ttatcaatat gccttggtag atgaaaacgg gaagcataat
     7981 ctggcagact tacgtacatt tcaggattgg tatttacgtt attggttaag aagcgttcct
     8041 ggtgtgtctg aagtagctag cgtgggtggt tttgtcaagc aatatcaaat caatttagat
     8101 ccggtcaagg ttcttgccta caatctatct gttcctgaca tcatcgaaaa aatacgtatg
     8161 agtaataatg ataccggcgg gcgggtgctc gaactctcag gagtagagta catgattcgt
     8221 gggcgagggt atattaagtc aacagatgac attgaaaaaa ttgctatagg taccaataca
     8281 aatgggacac cgattttgct gcgcgatgta gctactgtgc agcttggctc agatatgcgt
     8341 cgaggtgttg tcgaattaaa tggtcaagga gaaacagttg gcggtattgt catcatgcgc
     8401 tttggtgagg atgtgctaca ggtcattagt cacatcaaag agaagttgaa agaattacgg
     8461 gcagccattc ctgaagggat gaaaatcgtc aatgtttatg atcgcagcaa tctaattcgt
     8521 gaagccatct ccactgtcaa ttggaatttg attgaagagt tggtggtagt aggtttgctc
     8581 attattgtgt ttttagggca ttttcgttcg gctttgattc ctattattac cctgccactt
     8641 gccattttga tttcatttat tcccatctat ttcttaggta ttggtcttaa cattatgtcc
     8701 attggcggca ttattgtagc cattggggat atggttgatg cggctatcat catggtcgat
     8761 aatgcccata aacgtattgc ggattgggag atgaaagggt gctctggcga tcgtacacaa
     8821 gtgttgatcg attcggcgaa ggaagtgggg cctgcgattt tttcctctct tttggtcatt
     8881 gctatatctt tcatgcctgt ttttactcta gaagcacaag aagggcgact gttttcacct
     8941 ttagcttata ccaaaaactt agctatcttt atgagcgctt tgcttgcgat aactttgatt
     9001 cctatgctct tgcctctttt agtgcgtggt cgaatcattc ctgaacaaaa acatcctatt
     9061 acccgtttta tgcaaaaaat gtacgctcca gtgttaagat tagccttgag atatcgaaaa
     9121 tttgtgatgg gtattgccgt ggtagctgct ttgagcatta ttcctcttta taaactcatt
     9181 ggctctgagt tcatgcctcc tctttatgag gggacaattt tatatatgcc cgtcactttg
     9241 ccgggtattt ctgtgaccca agcgacttct ttgttgcagg aaatggataa gagattaaaa
     9301 acgtttcctg aagtggcaca tgtttttggg aaaacaggaa gagcagaaac ctccaccgac
     9361 ccttccccat ttaatatgat ggaagtgatt gttgaattaa agcctaaaga attttggcgc
     9421 aaaggaatga cttatgaaag cctggttgcc gagatggata aagcgttgca atttcctgga
     9481 gtgagtaatg cctggaccat gcccattaag gcacgcaacg acatgctcac cacaggaatt
     9541 cgaacagcag ttgggattaa aatttttggt cctgacatta aaaaaattga agctataggc
     9601 aaagaaattg agatggttgc taaaggagtg ctgggtacaa gtaatgtcta tgctgagcgg
     9661 gtagctgggg ggtattttct tgattttcaa attaatcgcg atcaactggc tcgttatggt
     9721 ttaaccatta tggatgtcaa tcgcattatt gaatcggctg tgggaggtga aaacattgct
     9781 accacgattg aggggcgcga gcgatatcct gttaatgtac gttatttacg agaattacgt
     9841 gatgatccag acaaaatcaa tcgcatttta gtcaaaacac ccagtggcgc tgaagtgcct
     9901 attgctcaat tagtgactct cactttccgt tcaggacctg ccatgattcg cgatgagaat
     9961 gccatgttag caggttatgt gttcattgat atcagcggcc gtgacattgg tggctacgtg
    10021 gaggaactaa aacaagtggt taaggccaaa gtcaaattgc ccccaggcta cacacttgcg
    10081 tggtcaggtc aatatgaatt catgcagaga gtttatgaga gacttaaaat tttcgtacca
    10141 ctgactttag tcattatttt tgttttgttt tattttacct ttcgtactat cacagagact
    10201 ttgatggtca tgttgggtgt gccgtttgcc ttatttggtg gctttttgct gctttatgta
    10261 ttgggatata acatgagtat tgcagtttgg gtaggcatga ttgctctcgc aggagttgct
    10321 gcggaaacaa gtgcggtgat gcttgcttat cttgattcag attataacaa gcaaaaagaa
    10381 aagggattac tcaaaacttt gcctgattta attcaaatgg ttcaacagtg tgcggtgtca
    10441 cgtattcgcc ctatggtgat ggcaggatta gctaacatac tcggtttgtt accggtgatg
    10501 tgggcaactg gcattggtgc ggatgtcatg aagcggcttg cagcccccat ggtgggtggt
    10561 gttttttcag cactattgct gaccttaatt gttatcccag tggtttatgt aatatggcgg
    10621 tggcaagcag atttgagaaa acaaacccat tagccaacac tgttaatatg atcgatttgt
    10681 ttgttaacat ctgtaaacag catgtgaatg aaggtttacg tggtaagttg caatagatga
    10741 ctgcaaaaga aaaacagtta tctcttgact cgttgcaaga ctttgaagcg caggttgggg
    10801 aagagtttat agataaagta aatggtcagc gtgggtttat tggtaatgcc agaacaagga
    10861 agaaaaaacg ctcttttttg tgacgaataa gattatgaat aatgggaacc tcgataaact
    10921 ggtttgccct gagttttggg caagatggaa gattatccag aatacgttac acttatttaa
    10981 agataaggtg gatttaaaaa tatctcaacc tatattttgt ttcataatgc caaggatatc
    11041 ggcccatgaa tggattggaa aaacaatgtt gtcccaaaga cgtcatactg actcaacagg
    11101 aaaaggcttc agaaagtttg agcgtttgtt gcgctcctag tattttaggt gcttcagata
    11161 gtttcttctc tttcttccat aagctatttc aagccaatct tgctaaaatg acattaggta
    11221 ttagtcctgc agcgttgggc tcgtcttact ccacctggct ttggcaattg gcgcaatctc
    11281 cagaggtctt atgggagctt gccctttatc cattcttgca tgccaatgac tgcattaaca
    11341 atattatttg cgttgagcgt gctgctgatg gtaaagacgt gcgttttaaa aaggatagtt
    11401 ggcagcccat gccttggcgt ttactggcgg aaggattttt gcaggtagaa gattggtggc
    11461 gacgtgctac aaatatccca ggattacccc ggcaggtgga gcgaacagtt tcgttttggg
    11521 tacgccaatg tcttgattcc gtgtctcctt ctaattttgt ttggtccaat cccgatttat
    11581 ttcatgaagc cattcgcacc aacgggctta atctcctcaa aggcagtcaa atagcaatgg
    11641 aagattggtt agaaaagcta actggtgcac cacccacagg ttctgagaat tttatcccgg
    11701 gtaaagacgt ggctgtgaca gcaggacgtg tggtatttca aaatcattta attgaactca
    11761 ttcaatatga agcccagacc aagacagtgt acaaagaacc catattgata ctgcctgctt
    11821 ggattatgaa atactatatt cttgatttat ccccacataa ctctttagtg aagtggctcg
    11881 taaaacaagg tcacaccgta tttatcattt catggcgtaa tccagataaa gaggactgtg
    11941 atttgggaat ggacgattat tatcgtcttg gtgccatggc ggccattgat atggtctcta
    12001 ccattctacc agaaactaaa atcaatctga tgggctattg tttaggcggt accttggcca
    12061 tgattacggc gtctatgatg ggaagatatg aggatgaacg tttaaattgc ctcacgctac
    12121 ttgcggccca aggggatttt agtgaagctg gcgaattaat gctctttgtg aatgaaagtc
    12181 aggtggattt ccttaaaagt atgatgtggg aacaaggtta tctggacact aagcaaatgg
    12241 ctggttcttt ccagatgctg cgggcatatg acttaatctg gtctaaaatg gtgcaagact
    12301 atatgcatgg catgcgtcgt gggatgattg atttaacagc ctggaatgct gatgccacaa
    12361 ggatgcctta taaaatgcac agtgaatacc ttgaaaaatt gttcttaaac aatgattttg
    12421 ccgaggggcg gtatatggtg gaaggaaaat ccgtggcagc tgaaaatatt cagtgtccta
    12481 tttttgctgt aagtactaaa aaagaccatg tagcaccttg gcagtcggta tataaaattc
    12541 atcttatgac agaggagaat gtgacttttg tccttacagg tggcgggcat aacgcaggta
    12601 tcattagtga gccaggtcat tctggtcatg cttaccatgt tcatgagcgc aagaaaggcg
    12661 atgcttactt aaatcccacg aattggcttg aaattgcaga aaaacgagaa ggctcttggt
    12721 ggcgagaatg gcatgattgg ttagtgcaac agtcaaccaa aaaacgcatt ctaccacctg
    12781 tattgaatac atcacttccg tcagctcctg gaacctatgt gttgcagaaa tagaagtgaa
    12841 tgggtatggc taagaaattc ttgaagagcg tgatctttaa tgactggcag taggtagtca
    12901 atgaacttta cgcaaaactc tggtgtaaaa tgatatcaat ttattggctg ccatgtctgg
    12961 taatatggat ctagctcaca tggattctac gtttgaagga tgaatatttt aaagtctcag
    13021 caattcagaa cttgagttta ctgcaacagc aattgaagag gcatttctat ttttgaatga
    13081 atttgatttt gcgcaaaatt catctctatt tggtcacagt aatggcatat gctgggtcag
    13141 gggaaatgtc aatatgtact aaagattaag cgcaaaactc aagccgtgac taaagaacca
    13201 catgtattac gagatatttt tttgaagaaa actacaaatg gcacaaagca ttacaaagac
    13261 tatacttaat gttattagat aaataataac
//
LOCUS       DACVWI010000086        13273 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.086, whole genome shotgun sequence.
ACCESSION   DACVWI010000086 DACVWI010000000
VERSION     DACVWI010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 13273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13273
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.086"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(171..746)
                     /locus_tag="JBH85_08695"
     CDS             complement(171..746)
                     /locus_tag="JBH85_08695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin"
                     /protein_id="HAU0946278.1"
                     /translation="MEYLTPKGLIPFITELKALNILQQDDNTNIALVSEILARWVVDK
                     DWLEKKFYYVNPEVGFNSWLIHEEKDHTLAVNIVAWQSGREITPHDHQTWGVVGSIIG
                     VEKNYFWKRMDDGSKPGYAEIIREKMAVIRPAGGVIGFLPNDIHSVMNESDDVAISLH
                     VYGKNLNYTGRHQYDPVNNLMQPFIVNYRAC"
     gene            complement(967..2262)
                     /locus_tag="JBH85_08700"
     CDS             complement(967..2262)
                     /locus_tag="JBH85_08700"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HAU0946279.1"
                     /translation="MGKNVVVLGTQWGDEGKGKIVDLLTQDAQVVVRYQGGHNAGHTL
                     KINGVKTVLRLIPSGMLRPNVTCYIANGVVLSPQALLSEIKELEGNGINVRERLRISL
                     ACPLILPYHIALDKARETHMGKSAIGTTGRGIGPAYEDKVARRALRVGDLFHRDRFAN
                     KLTELLDYHNFVLTQYFKQPAVDLESLLGESLQWAEELRPMVCDVSACLHEHRKQGEN
                     ILFEGAQGVYLDIDHGTYPYVTSSNTCVGSVINGAGFGPRYIDYVLGITKAYTTRVGG
                     GPFPTELLDDVGKRIAERGQEFGAVTGRPRRCGWFDAVLLKRSIELNSISGLCVTKLD
                     VLDGLEVLRIAVAYKDRDGNILSRPPLAADDFNDLLPVYEELPGWQESTADVTVMSDL
                     PANARAYLKRIEEILGIPIDMLSTGPERDSTITLRGPFL"
     gene            complement(2397..3317)
                     /gene="hflC"
                     /locus_tag="JBH85_08705"
     CDS             complement(2397..3317)
                     /gene="hflC"
                     /locus_tag="JBH85_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HAU0946280.1"
                     /translation="MRMNAFKTTLGVLIFLVLVLLFTSMFTVTQGQQGIILRLGRLVK
                     DPQTDAVKVLNPGLHFKTPFIESVRIFDTRIQTMDIKSTRIVTKEKKDVMVDYYVKWR
                     ISDLAQYFKSTGGNEFKAETLLEQQLNTLLRAQFGKRTISDAVSGGRDDVMEILRNAA
                     EKQAGELGIKVVDVRIKGIELPSNTSNAIYQRMRADMQKIANRHRADGQAAAEQIQAK
                     ADADVTVLLAKTKSNAQRIRAVGEAEAAAIYSKAYTQNPDFFALYKSLLAYEASFHSK
                     KDILILDQSSSFFDYFKQAMPKNDGTAAKK"
     gene            complement(3314..4456)
                     /gene="hflK"
                     /locus_tag="JBH85_08710"
     CDS             complement(3314..4456)
                     /gene="hflK"
                     /locus_tag="JBH85_08710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HAU0946281.1"
                     /translation="MGWNEPEKGKDPWSGKNQPPDLDEALKRIQDKLKKTFFGGTGKS
                     NNNSSGGSSGGLLAVTVLLIAFILWALSGIFIVDPAEQAVILRFGKYVETVGPGPHWI
                     PRFISSKIVMNVDRVLDYSYSAQMLTSDENLVSVSLAVQYRINDLSEYLFNVANPEES
                     LQQATSSALRQVVGTTTLDQIITEGREVWGGRVQETLTKTLESYKTGILIVNVSPQPA
                     RAPESVQDAFDDAIKAQEDEKRFKEQAYAYAAKVVPIAEGKASRIQQEAEAYSKQVVL
                     RAQGEVAEFLALLPQYNAAPQVTAKRMYLEAMQKVMNKSSTIIVDSKAGNLLYLPLDK
                     LLGNQYVPQSENLKAIKNGTNVSNEEDNLILSGRDLTRPTYSQGRD"
     gene            complement(4664..6151)
                     /gene="ankC"
                     /locus_tag="JBH85_08715"
     CDS             complement(4664..6151)
                     /gene="ankC"
                     /locus_tag="JBH85_08715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkC/LegA12"
                     /protein_id="HAU0946282.1"
                     /translation="MDFVSEMNKILQMELEQFKEFIQKKLEEDKNYLEKLFWLPNGSQ
                     MTVLNYLIEQYSEPKLGIDDANRDLLAKIDFVLHEAKDVNVGEPLHQAIVAGKISLAL
                     HLLGVDENNFTPGESEKTDVLSILSKVRKKIEESFNHVKRCFFDVDKRDGYGRTLLSL
                     ALDAKRQELLIAILARNPIVHATTLRSSAYVPFQPIHQAVVLDYAEGITLLASMGAQL
                     TNPLGSMRDTPVILAARLGKINALAALLELPTQSLSLESENNHLFEDKQTGHTAVEEL
                     CERMANENDKADALRGIAMLICRGAEPPRNEKMRNLLSSNRVAFLKAVSTYLADKPQL
                     VDAFVERCHLRESALHNIVYADHSWGSSIRHLLGVPSEAALIVEELVTRKYSDPSFAS
                     ENVSSLSTTATENLRSERNPLKLYAEFVRRYTQAYDSQMITNRWSTMRWMIAEGNCDW
                     DTVVRYSKNHPTSRTRIVLNEMFNPIPRVHEDIESQQSSPRVVLK"
     gene            complement(6229..7392)
                     /locus_tag="JBH85_08720"
     CDS             complement(6229..7392)
                     /locus_tag="JBH85_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HAU0946283.1"
                     /translation="MGSGFYKKIRKLSMIKHAILVSGLIVSFLASAAEMSFLAQLTEV
                     PGASGHEKNVRHLVQKQWQPYMEELKIDGMGNLIGQRRDNQKGPKLLFMAHLDETGFM
                     VESITPDGFLKVIPLGGIANSVIYAQRWTVSTPKGSVLAYSGMDSPHLLGDKKMLGSP
                     DINALFLDIGAENKEQAQKEFAIQPGLEVTPVSEFSQLSKNRFLGKALDDRLGLAVIS
                     DALRAVKQQPNQLYLAATVQEEVGMRGASTVYKATHPDIAINVEVGIADDYPMLLADR
                     KGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNNIPLQLEVEPGYGEDGSKVQAS
                     GMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLSLIAESLNQEVVDKIKKS"
     gene            complement(7365..8045)
                     /gene="trmB"
                     /locus_tag="JBH85_08725"
     CDS             complement(7365..8045)
                     /gene="trmB"
                     /locus_tag="JBH85_08725"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HAU0946284.1"
                     /translation="MMQRKIKSYVLRAGRISNRQQQGLDLWLEDYELKFDSPTPWNFA
                     KEFGRHDADTIVEIGFGMGTSLFAMAMNNPQCNYLGIEVHKAGVGSLVADLHEYQISN
                     VRVVVHDAVEVLQTKIPENSLAGVQIFFPDPWHKKRHHKRRLIQSEFIQMLVKKIRPS
                     GFIHCATDWEDYAEHILNVLSSESALFNQQKEGGYSPRPDSRPLTKFELRGERLGHGV
                     WDLVFIKK"
     gene            complement(8052..8213)
                     /locus_tag="JBH85_08730"
     CDS             complement(8052..8213)
                     /locus_tag="JBH85_08730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946285.1"
                     /translation="MKYKSGFITKKPKYCNIFTLFSLKTDFSGLLSKQVSGKSRIFNQ
                     NQYNPEILY"
     gene            8311..8547
                     /gene="rpmB"
                     /locus_tag="JBH85_08735"
     CDS             8311..8547
                     /gene="rpmB"
                     /locus_tag="JBH85_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HAU0946286.1"
                     /translation="MSRVCQVTGKRPMVGHKVSHANNKTKRRFLPNIQNHKFWVEEEN
                     RFVTLRLSTKGMRIIDKLGIKAVLDKIRAKGEKI"
     gene            8562..8726
                     /gene="rpmG"
                     /locus_tag="JBH85_08740"
     CDS             8562..8726
                     /gene="rpmG"
                     /locus_tag="JBH85_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HAU0946287.1"
                     /translation="MAAVTIKVKMESTAGTGYYKTTTKNPRNHPEKMELMMYDPKVRK
                     HVLFKEKKVK"
     gene            8936..10330
                     /locus_tag="JBH85_08745"
     CDS             8936..10330
                     /locus_tag="JBH85_08745"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HAU0946288.1"
                     /translation="MKPTLQIGIGQHLTLTPQLQQAIRLLQLSTFDLQQEIQLVVESN
                     PLLEATPVEEKEDAQINTNQNHDEYSDFQWSQLYNNLNKRNNFEENDYNFDNLHCTTT
                     NLQDHLNWQLDLTPMSDIDRVIATTIIDAINDDGFLTIPVAEIHASLNSDDFPLDIEE
                     IEAVRHRLQLFDPVGCASVNLAETLVLQLEQLPLEPKLLATAKKVILEDIELLGQHNY
                     RQLMKNHQISEKTIHEILQVIHKLNPKPGSLIHQDNIEYVIPDLTVKKIDNQWKVFLN
                     QDILPRLSINSQYAALIQRANNSLDNQFLKHNLQEARWFLKSIQSRQETLLKVATCIM
                     EYQHGFLEFGEEAMKPLILNDVASALDMHESTVSRVTTQKFINTPRGVFELKYFFSSH
                     VNTDSGGECSSTAIRAVIKKLISAENRKKPLSDSKIAQLIGEQGIKVARRTVAKYREA
                     MGIPPSNERKVISS"
     gene            10357..10656
                     /locus_tag="JBH85_08750"
     CDS             10357..10656
                     /locus_tag="JBH85_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HAU0946289.1"
                     /translation="MQINITGHGMDVTPALRAFTEEKFDKLERHFDHIRAINVVFDVE
                     KVRQIAEATVLVTKGELHASSESEDMYAAIDTLVDKLNRQLIKHKEKLLAHRDRD"
     gene            10847..11116
                     /locus_tag="JBH85_08755"
     CDS             10847..11116
                     /locus_tag="JBH85_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HAU0946290.1"
                     /translation="MIKTKIKIINRLGLHARASAKFVSTAAKFQSHIDVTKDTQTVNG
                     KSIMGVMMLAANKGSELTLEIDGPDEERMNEALVELINNRFGESE"
     gene            complement(11357..12100)
                     /gene="pssA"
                     /locus_tag="JBH85_08760"
     CDS             complement(11357..12100)
                     /gene="pssA"
                     /locus_tag="JBH85_08760"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HAU0946291.1"
                     /translation="MRMNKENHSGIYLLPNLLTTVSLFAAFYSIVASTKGQYEAAIVA
                     MFIGMIADSLDGRIARLTNTQTEFGAQYDSLSDMVTFGVAPSLLLYNLTLHQLGKFGW
                     LVAFIYTAAVALRLARFNTQIGKSDKRYFQGLPCPPAAAVMASFAWICFQNEWENLIV
                     SLFTAVLALIVSVLMVSNLRYYSFKEVDYKGKVPFLYVLVMILLFVAIAANPAIVLFA
                     SSGIYALSGPMLTVISLHKMRKQRRNMSK"
     gene            12312..12608
                     /locus_tag="JBH85_08765"
     CDS             12312..12608
                     /locus_tag="JBH85_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3579 domain-containing protein"
                     /protein_id="HAU0946292.1"
                     /translation="MHRVMSNRKNKTIVIEGVTSQGKTFRPSDWAERMSGSLAVFKNS
                     RIYYSPLLQPSVNSEGYKCVLLDPKLKESSPQVYQAIMDFAKANNLKICGEEDL"
     gene            complement(12752..13270)
                     /locus_tag="JBH85_08770"
     CDS             complement(12752..13270)
                     /locus_tag="JBH85_08770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmC"
                     /protein_id="HAU0946293.1"
                     /translation="MLGNISQSLYPVQKLITGGAYILGVLFFLTAIGKLKKIGDHRAQ
                     SSSQEKMFTPMMYLLVGALLIYLPSGMDLMANTAFGVGNVLTYSNYNPANIYSSMGFL
                     IRTAGVLWFIRGCVLVAHSSQPGTQQGLKGLVFLIAGVFAMNFDNTIAMINSALDYFV
                     KATLSVKAAAGF"
BASE COUNT         4217 a         2795 c         2311 g         3950 t
ORIGIN      
        1 taagtctaag cattgcaagc tcgttttgta cttggggtta gaaccgttat aatacgagtt
       61 tactcttatt tatcaatcaa ttacacactt attcgaagga ccgatttcaa gttgaccatc
      121 tcctggatgc cgcgaacaag tcgcggcacg taggcgttgg gagccaattg tcaacacgcc
      181 ctataattta ctataaatgg ttgcattaaa ttgttaaccg ggtcgtactg atggcgacct
      241 gtataattca aattttttcc ataaacatgt agtgaaattg ctacatcatc tgattcattc
      301 ataacactgt gaatgtcatt aggcaaaaaa ccaattaccc caccagcggg acgtataaca
      361 gccatttttt ctcttatgat ctcggcatac cctggctttg aaccatcatc cattcttttc
      421 caaaaataat ttttttcaac gcctattata ctacccacaa caccccaagt ctggtgatca
      481 tgcggagtaa tttctcgtcc tgactgccag gcaacgatat taactgctaa agtatgatct
      541 ttttcttcat gaattaacca ggagttaaag ccaacctctg gattgacata gtaaaatttt
      601 ttctccagcc agtctttatc tacaacccag cgtgctaaaa tttctgatac gagagcaata
      661 ttagtattat catcttgttg cagaatatta agcgctttga gttcggttat aaaaggaatc
      721 aatcctttgg gagttagata ttccataatt taccatttta ttgagtaaac attcagataa
      781 gagataattt atcttttatg tacattaact ttagcatgaa atggaattta gcaatgcaag
      841 aattgcttgc ggcccccaag gaaatagctt gctaaaacac agaacaataa tacttaaaag
      901 gcggaaagtg tcatatcaag aaatccttgc atgacactca tagtggttac aaaacttaac
      961 tttgtatcaa agaaaaggac ctcgtaaagt aattgttgaa tccctttcag gtcctgttga
     1021 tagcatatca ataggaatcc ctaatatctc ttcaattcgc tttagataag cccttgcatt
     1081 ggcgggtaag tcactcatca cagtcacatc agcagtagat tcctgccaac caggaagctc
     1141 ctcatagact ggtaacaaat cgttgaaatc atcagctgcc agaggaggtc gagataatat
     1201 attgccatcc ctgtctttat aagccacagc aatccgtaat acctctaagc catcgagaac
     1261 atccaatttg gtaacacaga gtcctgaaat actatttaac tcaatcgagc gttttaataa
     1321 aacagcgtca aaccacccac aacgtctggg tctaccagtt actgcgccga attcctgtcc
     1381 tcgttccgca atgcgttttc caacgtcatc aagtaattca gtggggaatg ggccaccgcc
     1441 aactcgagtt gtgtaagctt ttgtaatgcc taacacgtaa tcaatatagc gaggaccaaa
     1501 tcccgcacca ttaattacag atcccacaca ggtatttgaa gaagttacgt aggggtatgt
     1561 tccatgatca atatctaaat aaacaccttg cgccccttcg aataaaatat tttcaccttg
     1621 ttttctatgt tcatgcaaac atgcagaaac atcgcaaacc attggtctta attcttcagc
     1681 ccattgtaat gactcaccca atagggattc caaatcaaca gctggttgtt tgaaatattg
     1741 tgttaataca aaattatgat aatccaataa ttctgttaat ttattggcaa atcggtctct
     1801 atgaaataaa tcacctactc ttaaagcgcg ccgagccact ttatcctcat aagcaggacc
     1861 tataccacga cctgttgttc caattgcaga cttgcccata tgtgtctcac gagccttatc
     1921 caaagcaatg tggtaaggga gaatcagggg gcaagccagg ctaatgcgta atcgctccct
     1981 cacattgatg ccattaccct caagctcctt aatttcacta agtaatgcct gaggtgataa
     2041 aaccacacca tttgcaatat agcaggttac gttagggcga agcatcccgg atggaattaa
     2101 acgaagtact gtttttactc cattgatttt taatgtatgg cctgcattat ggcccccttg
     2161 ataacggaca accacttgag catcttgtgt cagcaaatca acaattttgc ctttgccttc
     2221 atctccccat tgtgtaccca aaacaacaac attcttaccc atgatttact ctttgtttgc
     2281 atacctgtaa aaattaaaaa tgcagttgca ttttacgaga aacccaactg catttatatt
     2341 agatggatga tgctaataaa tatcgaacct gattacagca aaatttcaca ttataattac
     2401 tttttagccg ctgtaccatc attttttggc atagcttgtt tgaaataatc aaaaaatgaa
     2461 ctgctttgat ccaatattaa aatatctttt ttactatgaa aactggcttc ataggctaac
     2521 aagcttttgt ataaagcaaa aaaatcagga ttttgagtgt atgctttgga atagatagct
     2581 gctgcttccg cttcaccaac tgctctaatt cgctgagcat tacttttagt tttagccaat
     2641 aaaaccgtga catcagcatc agctttcgct tggatctgtt ctgcggcagc ttgtccgtca
     2701 gctctatgtc tgtttgcaat tttttgcatg tcggctctca tgcgttgata gatagcatta
     2761 ctggtatttg aaggcaactc aataccttta atacgaacat caaccacttt aatacctaat
     2821 tcaccagctt gcttctcagc agcattacgc agtatttcca taacatcatc acgccctcct
     2881 gaaacagcat cggatatagt acgcttacca aattgggctc tgagcaaggt atttaactgt
     2941 tgttctagca acgtttcagc tttaaattca tttccacctg ttgatttaaa atactgggct
     3001 aaatctgaaa ttcgccattt cacataatag tcgaccatga catctttttt ctctttggtc
     3061 acaatacggg tcgatttgat gtccatggtt tggatgcgtg tatcgaaaat tcgcacactt
     3121 tcgataaaag gggttttaaa gtggagccca ggatttaata ctttcactgc gtcagtttga
     3181 gggtctttta ccaaacgtcc taaacgtaaa ataataccct gctgtccttg tgtaacagta
     3241 aacatactgg taaacaaaag cactagtacc aaaaagatta agacacccaa tgtcgtttta
     3301 aatgcattca ttctcaatct ctcccttgac tataagttgg tcttgtgaga tctcttccag
     3361 aaagaatcaa gttgtcctcc tcattactga cattcgtacc attttttatg gcttttagat
     3421 tttcagattg cggaacgtat tgattaccaa gtagtttatc taaaggtaga tacaataaat
     3481 ttcctgcttt actgtcaaca ataatagtac tgctcttatt cattactttt tgcatagctt
     3541 caagatacat ccgtttagcc gtaacttgag gagctgcatt gtattgagga agtaaggcta
     3601 aaaattccgc tacttctccc tgtgccctta agacgacttg cttcgaataa gcttctgctt
     3661 cctgttgaat acgactcgct ttaccttctg caatgggcac cacttttgct gcataagcat
     3721 aagcctgttc cttgaaacgt ttttcatcct cttgagcttt aatcgcgtca tcaaaagcat
     3781 cctgaacact ttctggagct ctggcaggtt ggggtgacac attaacgatt aaaattccgg
     3841 tcttatagct ttctaaagtt ttcgtcagag tttcttgtac tctacctccc caaacttctc
     3901 gaccttcagt tattatctga tccagggttg tcgtacctac aacttgtctt aaagcgctgg
     3961 aagttgcctg ttgtaagctt tcctcaggat ttgcgacatt aaacaaatac tcactcaaat
     4021 cattaatgcg gtactggaca gccaaagaga ccgatactaa attttcatca ctggtaagca
     4081 tttgagcgga gtaggagtaa tctagcaccc tatccacatt cataacaatc tttgatgaga
     4141 taaaacgagg aatccaatga ggaccagggc caactgtttc tacatattta ccaaagcgga
     4201 gtatcacagc ttgctctgca ggatccacaa taaaaatacc agaaagagcc caaagaataa
     4261 aagctattaa taaaactgtt acagcaagca atccgccact ggaaccacct gacgaattat
     4321 tatttgattt gcccgtgcct ccaaaaaatg ttttcttcaa tttatcctgg atacgtttaa
     4381 gagcttcatc caaatccgga ggttgatttt tacccgacca tggatctttg cccttctctg
     4441 gctcattcca ccccatgtac tactcctagc aatttcaaat gaatttagga ttttatgggg
     4501 tatatgaagt ttaagcaagt agatacttca ggacttgtat attgaaatga agcaaatgac
     4561 tatctgtact tggcaatcat ctggaaatac tcaagatgtt tttaaacctt cgcagaccgc
     4621 catggtgtct gtcgaaggtt caagatcaaa atattgacat aaattatttt aggacaactc
     4681 gtggagaact ctgttgagac tcaatatcct catgtaccct cggtatcggg ttaaacattt
     4741 cattcaacac aatcctggta cggctcgttg gatgattttt cgaatatcga actactgtat
     4801 cccaatcaca atttccttcg gcgatcatcc agcgcatggt actccaacga ttggtaatca
     4861 tttggctatc atatgcttgc gtgtatcgcc tgacaaattc ggcatagagt ttcagtgggt
     4921 tcctctctga acgtaggttt tccgtggcag tagttgataa tgacgaaaca ttttcgctgg
     4981 caaaggaagg atcactgtat tttctcgtca ctaattcttc aacaataagg gccgcctcac
     5041 tgggaacacc gagtaaatga cgaatagaac tcccccatga atgatcggca taaactatat
     5101 tatgcaaagc actttctctt agatgacaac gctccacaaa agcatcgacc aattgaggct
     5161 tatctgccaa ataggtactg accgctttta agaaagcaac ccggttgctg cttaacaaat
     5221 ttcgcatttt ttcattacgg ggtggttcag cgccacggca tattagcatg gcaatcccac
     5281 gaagagcgtc tgctttatca ttctcattgg ccatgcgttc acataactct tccactgctg
     5341 tatggccagt ttgtttgtct tcgaataaat gattgttttc ggattcaaga gacaaacttt
     5401 gagttggtaa ctccagtaaa gccgccagtg catttatttt gcccaaacga gcggccaaaa
     5461 tgaccggagt gtctctcatg ctacccaggg gatttgtcaa ttgcgccccc atgctggcta
     5521 ataaggtaat gccctctgca taatctaaaa caacagcctg atgaataggc tggaaaggaa
     5581 cataggctga ggatcttaac gttgtcgcgt gtacaatggg atttctggct aaaatggcaa
     5641 ttaacagttc ctggcgtttg gcatctaatg ccaaagacaa caaagtgcgc ccataaccat
     5701 cccgtttatc cacatcaaaa aaacatcttt ttacgtgatt aaaagactct tcgatttttt
     5761 tccttacttt agacaaaata ctcaaaacat ccgttttttc actctccccg ggtgtgaaat
     5821 tattttcatc cactcccagc agatggagcg ccaaggaaat ttttccagca acaattgcct
     5881 ggtgcaaggg ctcaccaaca ttcacatctt tagcctcgtg aaggacaaaa tctattttgg
     5941 caagcaaatc cctatttgca tcgtctatac caagcttagg ctcagagtat tgttcgatca
     6001 aataatttaa aacggtcatt tgagaaccat tcggcaacca aaataacttt tctaaataat
     6061 ttttatcttc ttccagcttc ttttgaataa attctttaaa ttgctctaat tccatttgta
     6121 gaatcttatt catttcactt acaaaatcca taataatact tcctttattt ataaactatt
     6181 tataggacac caatattaca caatggacaa tgggagatca aaatattgtt aactcttttt
     6241 aatcttgtca accacttcct gattcaaact ctcagcaatc aagctcaaca atttaactgt
     6301 attatcgtaa tctcttttat caaatatccc ggcatgttgg tgtgcatatc gaatagggat
     6361 accaatgttg acgacaggaa cgcccatgcc tgatgcctga accttggagc catcttcacc
     6421 atatcctggc tccacctcaa gttgtagcgg gatattattt ttattagcaa gttccattat
     6481 ccagttaatt aactcctgat tgggaatcat tgatttgtca taaacaaata aggatggtcc
     6541 cttacccaaa ccaattcgac cttttctatc agccagcagc attggataat catctgcgat
     6601 tccgacttca acattaattg caatatctgg atgagtcgct ttgtatactg tactggcacc
     6661 ccgcatacca acttcctctt gcactgtggc agcaagatat aattgattgg gttgttgttt
     6721 cactgctctc agagcgtcac taatgacagc taatcctagg cgatcatcca aggccttgcc
     6781 taaaaatctg ttcttgctta attggctaaa ttcacttact ggtgtgactt caagaccagg
     6841 ttggattgca aattctttct gagcttgttc tttattctct gctccgatat ctaaaaacag
     6901 ggcattgata tcaggggacc ctaacatttt cttatcaccc aataaatgcg gagaatccat
     6961 accagaataa gctaatacag atcctttagg tgttgaaact gtccagcgtt gagcatagat
     7021 gactgagttt gcgatcccgc ctaaagggat aactttcaaa aaaccatcag gtgttatgga
     7081 ttccaccata aaccccgttt catcaaggtg tgccatgaag agtaatttcg gtcctttctg
     7141 attatctcta cgctggccga tcaaattacc cataccatcg atctttagct cctccatata
     7201 gggttgccac tgtttttgca ccaaatgacg aacatttttt tcgtgcccag aggcaccagg
     7261 tacctccgtc aattgggcca aaaatgacat ttcagctgct gaagctaaaa aggaaacaat
     7321 caatccgcta acaagaattg catgctttat catagataac ttccttattt ttttataaaa
     7381 accagatccc atactccatg gcctagacgc tcaccacgca gctcaaattt tgttaacggc
     7441 cttgagtccg ggcgtggtga gtatccgccc tctttttgtt ggttaaacaa ggcggattct
     7501 gaagataaaa catttaaaat gtgctctgca taatcttccc aatcagtagc acagtgaata
     7561 aatcccgatg gcctgatttt ttttactaac atttgaataa attcggattg aatcagtcgt
     7621 cgcttatgat gacgcttttt atgccacggg tcgggaaaga aaatttgaac cccggcaagc
     7681 gagttttctg gtattttagt ttgtaatact tctactgcat catgcactac tacccgtaca
     7741 ttagatatct ggtactcatg caagtccgct accagactac caacgcctgc tttatgtact
     7801 tctatgccca gataattaca ttgagggtta ttcattgcca tggcaaacaa tgaggtaccc
     7861 ataccaaaac caatctctac aatagtatct gcatcatgac ggccaaattc ttttgcaaaa
     7921 ttccagggag tgggactatc aaattttaat tcatagtctt caagccaaag atctaatcct
     7981 tgttgctgtc tgttactgat tcgcccagcg cgcaacacgt aacttttaat cttacgttgc
     8041 atcacaataa ctcaatataa aatttcagga ttatactgat tttgattaaa tattctactt
     8101 ttaccagaca cctgtttgga taatagccct gaaaaatcag tttttaatga aaacaaagta
     8161 aaaatattgc aatatttggg tttttttgtt ataaaaccgc tcttgtattt catatctggt
     8221 tattttttac aacgaaagcc ccccaaaata aacaccactg tagtgcattg gtaagggctg
     8281 ttaaaatttt ttttatcttg gagtaacaca atgtctagag tatgtcaggt aactggcaag
     8341 cgacccatgg ttggtcataa agtgtcgcac gctaataaca aaaccaaaag acgcttcctg
     8401 cctaacattc agaatcataa attctgggtt gaagaagaaa atcgatttgt caccttgcgg
     8461 ttaagtacca aaggtatgag aattattgac aagttaggca taaaggcagt tctggataaa
     8521 atcagagcta aaggcgagaa gatataacaa ggggataagc catggcagct gttacaatta
     8581 aagtgaaaat ggaatccaca gcaggaactg gatactataa aaccactacc aaaaatccac
     8641 gtaaccatcc tgaaaagatg gaattaatga tgtacgaccc taaagtacga aagcacgtgc
     8701 ttttcaaaga gaaaaaagta aaataaattg ataggcccct ttctttgggg cttacgccct
     8761 atcatcatcc actttaaaac caatttgtta tatttcaaaa caagcctatc attttattaa
     8821 aaatataggt aattccatta cttttaaatt caaattaacg cccgtaagca ctggataatc
     8881 cttgtggatc gtttaaactg atagttaaag acagtgaaaa aaaaagagga tttgaatgaa
     8941 accgacattg cagattggta ttggtcaaca tctcacgtta accccacaac tgcaacaagc
     9001 cataagactg ctgcaattat ccacctttga tttacaacaa gaaattcaac tcgttgttga
     9061 atcaaatcct ttgcttgaag ccactcctgt tgaagaaaaa gaagacgccc aaataaatac
     9121 taatcagaac catgatgaat attcagattt tcaatggtcg caactgtata ataacttaaa
     9181 caagcgcaat aattttgaag aaaacgatta caatttcgat aatttacact gcactaccac
     9241 caatttacaa gatcatctta actggcaact tgacctgacg cctatgagcg atattgaccg
     9301 agtcattgct acaacaatta ttgatgcgat aaacgatgac ggctttttaa ctatacccgt
     9361 tgctgaaatt cacgccagct taaatagcga tgatttccct ctggatatag aagaaataga
     9421 agcagtgaga cacaggcttc aattatttga ccccgtagga tgcgcatctg ttaatttagc
     9481 agaaacactc gttttgcaat tggaacaact tccactggaa cccaagcttt tggctactgc
     9541 caagaaagtc attcttgaag acattgagtt gctagggcaa cataactaca gacaactcat
     9601 gaaaaatcat caaataagtg aaaaaacaat tcatgaaata ttacaagtca ttcataaatt
     9661 aaatccaaaa ccaggaagtt tgatccatca agataatatt gaatatgtta ttcccgactt
     9721 gactgttaaa aagatagata atcaatggaa agtttttttg aatcaagata ttcttcccag
     9781 gctgagtatc aatagccaat atgccgcttt aatccaacgc gcaaacaata gtctggataa
     9841 tcaattctta aagcataatt tgcaagaagc acgttggttt ttaaaaagca ttcaaagccg
     9901 tcaggaaaca cttctaaaag tagcaacctg tatcatggaa taccaacatg gatttctgga
     9961 atttggtgaa gaagcgatga aaccattaat attgaatgat gtagcttctg ccttggatat
    10021 gcatgaatca acggtatcaa gagttacaac tcaaaaattt attaacactc ctcgaggtgt
    10081 ttttgagtta aagtacttct tctccagcca tgtcaatact gatagcggag gagaatgctc
    10141 ttccaccgca atccgagcgg taataaaaaa attaatttca gcagagaata gaaaaaaacc
    10201 tttgagtgat agtaaaattg cccaactaat aggtgagcaa ggcattaaag tagcaagacg
    10261 tactgttgcc aaatatcgcg aagcaatggg gattccccca tccaatgaaa gaaaggttat
    10321 tagtagttaa ttaatcggtc aacgaaagga ggttttatgc aaatcaacat tactggacat
    10381 ggtatggatg tcactcctgc actaagagca ttcactgaag aaaaatttga taagcttgag
    10441 cgtcattttg atcacatcag agcaattaat gtagtatttg atgtcgaaaa agtaagacaa
    10501 atagcagaag cgaccgtatt ggttaccaaa ggcgagttgc atgccagttc agaatcagaa
    10561 gacatgtatg ctgctattga tactttggta gacaaattaa atcgacaact gattaaacat
    10621 aaagaaaaac ttttagccca tagagacagg gattaaatgt tattttaaat acaaaccctt
    10681 ttactttaat ttaatatcaa caccttctca gtgcttatgt aaactgacat aaaacaaata
    10741 accgtttttt agatgaggtc atagcactga gaaagagggt tgattactaa aatcacttat
    10801 ttaatcactg tacctgatgc cagagtcatg atacattgta tgtgctatga tcaagaccaa
    10861 aataaagata atcaacagac tcggtttaca tgctcgtgcc tcagcgaaat ttgtctcaac
    10921 agcagcaaaa tttcaaagcc atattgatgt aaccaaagat actcagaccg ttaatggcaa
    10981 aagcattatg ggtgtgatga tgcttgctgc taacaaaggt agtgagttga cgttggaaat
    11041 tgacggtcca gatgaagaac gcatgaatga agctttagtc gaattaatca ataatcgatt
    11101 tggggaaagc gaataaagaa tactaaccaa cgctgtttac ctctgctcca tatctttttg
    11161 caacacacag aggttcctgt tctctatcaa tgttcctcgc gttcttgtaa catctttatt
    11221 atgatcaacc tgtgagtcaa taaactgacc taagatctca atacacctta attgatacta
    11281 atctgaagaa atctactgtt cacaggtctg ggtaacagat ttacataata attcatcaag
    11341 aaatacacaa tccatgtcat ttgctcatat ttcttctttg tttcctcatt ttatgtaatg
    11401 aaatcaccgt caacataggg cctgataaag cataaatacc tgaacttgca aaaagcacta
    11461 ttgcaggatt tgcagcaatt gcaacaaaca aaagaatcat cactaaaaca tataaaaatg
    11521 gaaccttacc cttataatcc acttccttaa aactgtaata gcgtaaatta ctcaccatca
    11581 atacggaaac aatcaaggcc aggacagctg taaataaaga tacaatcaaa ttttcccatt
    11641 cattttgaaa acagatccaa gcaaaagaag ccattactgc tgcagccggt ggacatggga
    11701 ggccctggaa ataacgctta tctgattttc caatctgagt attaaaccga gcgagacgca
    11761 acgcaacagc cgctgtataa ataaatgcga ccaaccaacc aaattttcct aattgatgca
    11821 gagttaaatt atataacagc aaggatggcg ctactccaaa agtaaccata tcagacaaac
    11881 tatcgtattg agcaccaaac tcagtttgtg tattggttag ccgggcaatc cgtccatcaa
    11941 gactgtcagc gatcattcct ataaacatag cgactatagc agcctcatat tgtccttttg
    12001 tggaagccac tattgaataa aatgctgcaa ataaactgac agtcgttaat aaatttggta
    12061 acaaataaat cccagaatga ttttctttat tcattcgcaa tcatacctca ttcattttta
    12121 aatcaaggac atgctatcat aagtagaact aaatctacta tggaaactta tgcttagtca
    12181 taaagacagc atgcaattgt gactaataat tggcaatgac taaagcgaaa caaccattta
    12241 ttgcaataaa ataattaatt ttccctgcag gcccagcatg atgatgatat aattatcata
    12301 ctgtatttaa tatgcataga gttatgtcta atcgaaaaaa taaaactatt gtcattgagg
    12361 gtgttacttc acaaggcaaa acatttcgcc caagtgactg ggccgagcgt atgagcggtt
    12421 ctttagctgt ttttaaaaat agtagaattt attattctcc gctcttgcaa ccaagcgtta
    12481 atagtgaggg ttataaatgc gttttacttg atcccaaact caaggaatca agcccacaag
    12541 tttatcaggc aattatggat tttgctaaag ctaacaactt gaaaatctgt ggtgaagaag
    12601 acttataaca ttccaaagga ttgccctcca gttttatttt ctcaggactt aggaaaaccc
    12661 ccaatttctt ggttaaaaac atttttgcct cgatcttggg ggttttccta agtcctgttt
    12721 ctttaaagtg cagacaaatc aatcagaaaa actagaatcc cgctgcggct tttactgata
    12781 aagttgcttt gacaaaataa tctaaagcag aattaatcat ggcaatcgta ttatcaaaat
    12841 tcattgcaaa aacgcctgca ataagaaata ccaatccttt taatccttgt tgagtacctg
    12901 gctggctgga atgagcgaca agtacacatc cacgtataaa ccacagaaca cccgccgtgc
    12961 gaattaaaaa ccccattgaa ctgtagatat tggcaggatt ataattggaa taagttaata
    13021 cattaccgac accaaaagcg gtgtttgcca taagatccat acccgaaggc aagtagatta
    13081 aaagtgcccc aactaataaa tacatcattg gagtaaacat tttttcctgt gaggaggatt
    13141 gagcccgatg atccccgatt ttttttaact tgccaattgc cgttaaaaaa aataagacac
    13201 ccaatatata agctcctcct gtgataagtt tttgcacagg ataaagggat tggctaatat
    13261 tacctaatat agt
//
LOCUS       DACVWI010000087        12274 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.087, whole genome shotgun sequence.
ACCESSION   DACVWI010000087 DACVWI010000000
VERSION     DACVWI010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 12274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12274
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.087"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..974
                     /locus_tag="JBH85_08775"
     CDS             <1..974
                     /locus_tag="JBH85_08775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0946294.1"
                     /translation="DKNSKSFGEANERIGNAIHHVCLNASDAKFIKSNIQESYQSWAN
                     VLYDRVFLNWGLCDKKIYRELSSLNFDFSTVGFFPHVYGQSLLFYLIRPLIKIHFFNK
                     RLLDVGCGNGVGLKISSELLKTRYALGIDLVSKLVTNSNNSFYIEDKINYMQADAENM
                     AIANESFDIVTNLESSHLYPQIEHFFSEVERVLAPNGFFCYADVHFDVKQQAQRLEAF
                     VKTKKNLRIIEKHNITKMVQASIYQRLIVNEKGFYQLAQYLLGPDKIHYTSELANVAS
                     SMGLMFLPWWRIRFKNPALQALGKFARRCKHWNKKYYFYYLIQKIDS"
     gene            complement(1087..1929)
                     /gene="htpX"
                     /locus_tag="JBH85_08780"
     CDS             complement(1087..1929)
                     /gene="htpX"
                     /locus_tag="JBH85_08780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HAU0946295.1"
                     /translation="MINNLKTFILLASLTALLVVIGGLLGGSTGMLIALVFAGVMNFS
                     AYWYSDVLVLKMYNAEPLPNNHFVNNIISELAHRAGTPVPKVYLINNSTPNAFATGRN
                     PENASIAVTTGLLDRLTQEEITGVLAHELAHVIHRDTLINVVSATIAGAISGIANMFM
                     WLSMFGHNSNNEEGVHPVVGMIMMIVAPLAAGLIQMAISRSREFEADAGGARISGNPQ
                     WLASALLKLDQANHEQYFDEAETHPSTAHLFIINPLNGEKLANLFSTHPSTAERVARL
                     RAMY"
     gene            2143..3054
                     /locus_tag="JBH85_08785"
     CDS             2143..3054
                     /locus_tag="JBH85_08785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0181 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946296.1"
                     /translation="MYSKYPAFFLNKNIKSSSGVQFSNVVKIPSAIESLYRGDNNLTG
                     IIFLLPTLITGVFCQNFPEVVDIEQIRLHKLTNLSNDFHMVSMSEDPQIALDWGNGCF
                     ITIDPVSFSDYIVDVHATFSENQLNLPGRMEREKEHVALAVPFCSIKKITIHNKELAN
                     PFYLSIPQENHEAKMELNTLYGELISLLRKKYTQEVDEKEEQIALRTYAIRYLDFYAK
                     FCGCDNPFDKTIAQLSELYPEFMSNFLQSSHFSSKTGLMKEIVVNSLDNLFKEHPYTK
                     SIDASYIYRVKESTTCYEDDWAKPVYD"
     gene            complement(3101..3553)
                     /locus_tag="JBH85_08790"
     CDS             complement(3101..3553)
                     /locus_tag="JBH85_08790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946297.1"
                     /translation="MLNSSSYMKKSSFFDYSFFTISDTKEEFPLFPEEGMDCLFEKLG
                     SRITSKKAGNTYFISPADPSIAIQKGNDGVHEYYHLLLNKKVIAVSSFVNHKTTIYLA
                     NIIKQLEPERIGTPVDFDFLGDTDETDSVFSDTLDNAEGNVDQTPSPR"
     gene            3882..5378
                     /locus_tag="JBH85_08795"
     CDS             3882..5378
                     /locus_tag="JBH85_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HAU0946298.1"
                     /translation="MTKKVTNIAIIGGGTGLTSAWALENQQKFHVTVFEENDRLGGHI
                     HSIKVNNVILEGGAEFIGPPTLYPNVHRLFQYLGVALDQFELNMDFDDLKQKDHIVLP
                     PLYHTSSGRSEDTSSILYTLSCGLFGKRRKQNETRVSVDTLLTEMYNLLEMNHLIMDA
                     RNKLLHPDNLITLEQFIKEFKEKCVHTLSPIDKFAEEFLYPLIASGWGVSIETIKTFG
                     AHYAMNYLAAGMNWFDAPEGLSSYIDRMVAQCTNTQFNANTAIKKLIPITIDGKIKYQ
                     LLKRDGTFVCDATGSPMIYDDVVISTPAYVTSELLSGIESNTIKVLREKLANVTYYDT
                     TVVFHQDPEYLSPYRTVVHSRFDGAQSANTMCKPWKFNNEETPIMKTWVLPGQAMPKN
                     VLREVHYKHPVMDKNYYEAQQALHAAQGEAGLWHGGILAGFNDSHESGITAALQVAAQ
                     LNHREHCLHKNERLALFPNLVDSVLSPKLSTGRVVEVEGVVSSSMSYT"
     gene            complement(5623..6507)
                     /locus_tag="JBH85_08800"
     CDS             complement(5623..6507)
                     /locus_tag="JBH85_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HAU0946299.1"
                     /translation="MKKLASTLLCFSLLISASVFARDKYYLITHGSQDPYWTSLFQGA
                     KKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRAN
                     KLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPG
                     HIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQA
                     LDPLGQMLLHPDRYDFNYQPQVYSFDKTPNTVSLIHKKLVNYVMDQQPFLMGYLSITQ
                     LVLMNRYQLNPVNINTAM"
     gene            complement(6511..7251)
                     /locus_tag="JBH85_08805"
     CDS             complement(6511..7251)
                     /locus_tag="JBH85_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HAU0946300.1"
                     /translation="MINSHQTQPLLRLENIEKSYGSHRILNKVSFCLYPGEITALIGD
                     NGAGKSTLVQIISGYIQADKGNIYWQEQPLCYSNQYNAPFEMRRLGIQIVHQQLALID
                     ELSIWRNFFLGNEINKKIGPFKFLNIRLMQHIASQSLQSFGLVCLPNIDLPVKKLSGG
                     ERQMLVVCRAKYFNAKLLILDEPTSALSPAQADKVLQIIKNIAQAGIAIVFITHNPAH
                     IQNTAHKVIKLSCGTIEIMELTNTLIKG"
     gene            complement(7248..8189)
                     /locus_tag="JBH85_08810"
     CDS             complement(7248..8189)
                     /locus_tag="JBH85_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0946301.1"
                     /translation="MYKIHHYFLFGVLVPFISLVSLFTIFSSDFLTLTTWASILASAS
                     DIGIIVLGVTLLLIGGEFDLSVGANFALSGLLFGSLTLLGINSFLALTIALAIGACIG
                     LINAACTVFFKIPSFIVTLGSMLILRSLILLYTQGLPVSVEDTNGVMQVLAGELSQNL
                     LSSFIWWFAIGFYLIYLLNWTKLGNHIVATGNNCDSAYLSGINTIRVKFFCFVCCGII
                     AAFSGVTQFSHLNSLSPIAGEQYELYAIAATVIGGTSLKGGQGSIISTLLATLLLSTV
                     DTGIVQIGVSTYWYRSFIGLILIFAMTINVYLRKSDS"
     gene            8348..9775
                     /locus_tag="JBH85_08815"
     CDS             8348..9775
                     /locus_tag="JBH85_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HAU0946302.1"
                     /translation="MNGFHFMISKKITQISFSLALALIVGVAEAKTTRPADEQQRARS
                     IYKQFIEIQSGFTTGSTTPLVEVAVKYLKKAGFSNEDIFVGGASPQKANLVVRYRGTG
                     DKKPLLLLAHTDVVEAKASDWSMDPFQLTEKEGYFYGRGTLDDKAQAAIWIANLIQYK
                     QEGFKPKRDIIVALTADEEGSSPYNGISWLIKNHKDLIEADFALNEGGWGDLANGKKI
                     SQNIQVSEKYIVNYNLEVRNKGGHSSLPTKDNAIYRLAGALERLSKFNFPLKTNDVTA
                     AYFKQMAAIETGPLKTEMVEASKGSKQAMQRLADSSPQWNAILRTTCTPTLLEGGHAM
                     NALPQLAAVTINCRVLPEDSPEMVEQSLKTAINDPEVTLKRIGKLSRGPSSPLSPEIL
                     KTITQLTQRYWPEVPTIPIMVTGATDGRYLRSVGIPTYGVMGLFLDRDDFRAHGRDER
                     ISVESFYEAHAFLYDLVKQLSSNVT"
     gene            9895..10971
                     /locus_tag="JBH85_08820"
     CDS             9895..10971
                     /locus_tag="JBH85_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HAU0946303.1"
                     /translation="MENRYILKGLKVIDLSSVLAGPSVGTFFAELGASVVKIEHPVHK
                     DVTRTWKLPGEDPDSEISAYFASVNFGKEYLFLDLMKQEDYLCFLNLIAESDILIMNF
                     KKGDDVKLRIQDDHLHSINSRLIIGKINGYGDESDRVAYDLVLQGESGFMSINGTQES
                     GPVKMPVALIDVLAAHHLKEAILLALYQREKSGKGRVVSVSLYDAAVSSLINQASNYL
                     MTGQVPQRIGSLHPNIAPYGELFQTSDGALIILAIGSDRHFVKLCNILGLKDLPGKDE
                     FRHNQNRVRNREQLAVLIAEQTEKLQSSELLEMLHRENIPAGKIMDLKDVFDNERAKS
                     LIRKEVIDDVPTARVTSVVFKQTL"
     gene            complement(11113..11979)
                     /locus_tag="JBH85_08825"
     CDS             complement(11113..11979)
                     /locus_tag="JBH85_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946304.1"
                     /translation="MKPGYLLGALLLSPILAFANSDNNTDGLIFSPLPQNKNTVVRHY
                     SNEQEMPNLSQMAQRTIDFPTQIVRVSGNLTGLELSCDDVENEIDQVFSKKISPNLFT
                     YNTYVSCGYDVNDPEQHAINFSIQSYFDPLTDNAVDYLKSYLKEYNGYNLFNTTTLQI
                     ENAKGIIVSMNLNAGLKSNPDKTPFTLYRQDRNNFYFKSNFDVRKELISDIYQRFYSN
                     DPDMILPFFDKWIFSYAGSVYYSILMASNYLELQPERIFVMENEGDIFVSDLRYYFAN
                     LCMKRNPNKHCL"
     gene            complement(12082..>12274)
                     /locus_tag="JBH85_08830"
     CDS             complement(12082..>12274)
                     /locus_tag="JBH85_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946305.1"
                     /translation="IVFFYKLLHSFASWYCPSIQNHILLNSYLWLFKVKKFAIPCRSH
                     ALIASVLFMLVIGSNLQTR"
BASE COUNT         3888 a         2155 c         2464 g         3767 t
ORIGIN      
        1 tggataaaaa ttccaaaagt tttggtgaag caaatgagcg aataggtaat gcaatacatc
       61 atgtctgttt aaatgcgtcg gatgcaaaat tcattaaatc caatattcaa gagagctacc
      121 agagctgggc caatgtgctt tatgacagag tttttttgaa ctggggatta tgtgataaaa
      181 aaatatatcg cgaattatcg tcattgaatt ttgatttttc tacagtaggt tttttccctc
      241 atgtttatgg gcaatcactt cttttttatt tgataaggcc attaataaaa atccattttt
      301 ttaataaaag attacttgat gtgggttgtg gtaatggcgt aggtttgaaa ataagttctg
      361 aattattaaa aacaagatac gcgttaggca ttgatttggt cagcaaattg gtcactaatt
      421 ccaataatag cttctatata gaagataaaa ttaattatat gcaggctgat gcagaaaata
      481 tggctattgc aaacgaaagt tttgatattg tcactaacct tgaaagttca catctttatc
      541 ctcaaatcga gcattttttt tctgaagtag agagggtttt agcacctaac ggattttttt
      601 gttatgcgga tgttcatttt gatgtgaagc agcaagcgca gcgattagaa gcatttgtga
      661 agacaaaaaa aaatttacgc atcatagaaa agcataatat tactaaaatg gtgcaagcat
      721 caatttatca acgcttaatt gtcaatgaaa aagggtttta ccaattggct caataccttt
      781 tggggcctga taagattcac tatacttcgg aactggctaa tgtggctagt tcaatggggc
      841 tcatgtttct tccctggtgg aggattcgct ttaaaaatcc ggcattgcaa gcgctgggaa
      901 aatttgctcg ccgatgcaag cactggaata aaaaatatta tttttattat ttaattcaaa
      961 agatagactc ataaaaacca atctattatt tccagggcat tattttattt tgggtttgat
     1021 aaattttaaa agtcattcct tactgtcagt aaagtaatgt ttactccaaa tcagtcatcc
     1081 tgttaattag tacatggctc ttagtcttgc tactcgttct gctgtcgatg gatgggttga
     1141 aaataagtta gccagctttt ctccgtttaa ggggttaatg ataaacaggt gcgcagtgga
     1201 ggggtgagtt tctgcttcat caaagtattg ctcatggttg gcttgatcaa gttttaacaa
     1261 ggcactggcc agccactgcg gattcccgga aattcgtgct ccaccggcat ccgcttcaaa
     1321 ctccctggag cgcgatatag ccatttgaat cagtccagcc gccaggggag ctactatcat
     1381 catgatcatg ccaaccactg gatggacacc ttcttcatta tttgaattgt ggccaaacat
     1441 tgaaagccac atgaacatat tggcaatccc gctaatcgcc cctgctatcg ttgcgcttac
     1501 cacattaatt aaagtgtcgc ggtggattac atgggccagt tcatgagcta aaactccggt
     1561 gatttcctct tgagtgagcc tatctaacaa tcctgttgtc acagcgatac tggcattctc
     1621 tggatttctc cctgttgcaa acgcgtttgg agtagagtta ttaattaaat aaactttggg
     1681 tacaggggtt cctgccctat gcgcaagttc tgaaataata ttgttaacaa agtgattatt
     1741 gggcagaggt tcagcattat acattttcaa aacaagaaca tcagagtacc agtaagctga
     1801 aaaattcata actcctgcaa atactaatgc aatcagcatt cctgtagagc ctccaagcaa
     1861 tcccccaata acaactaaca atgctgttag agaggctaac aagataaaag ttttcaggtt
     1921 atttatcatt tctcatcacc tcatttactc ttcctatatt ttatatctca taaataaggc
     1981 cagatgttaa aaattcaact tggaaccttg tctctgttta tttatgccca tgctttagag
     2041 ttggaaatca agaaaaaccc attgagagta atacggcgtt atttttattt tgaggtcaat
     2101 gtgatatatt gttgatcaat tccgtatgtc attaaacatt ttatgtatag taaatatcca
     2161 gcatttttcc taaataagaa tataaaatct tcctcaggtg tgcagttttc aaatgttgta
     2221 aaaattccct ctgcaattga atcattatat cgaggtgata ataatcttac aggtatcatt
     2281 tttcttttgc ccactctaat tacaggagtt ttttgtcaaa attttcctga agttgtggat
     2341 atagagcaaa taagattgca caaactgacc aacctgtcta atgattttca tatggtcagt
     2401 atgtcagagg atcctcaaat tgcattagat tgggggaatg gatgttttat aacaatcgac
     2461 cctgtttcat tttccgatta tattgtagat gttcatgcta cctttagtga aaaccagctc
     2521 aatttgcctg gccgaatgga acgagaaaaa gagcatgttg ctttagctgt acctttttgc
     2581 agcataaaaa aaataacaat tcacaataaa gaattagcta acccttttta tctcagcata
     2641 cctcaagaga atcatgaagc aaaaatggag ttgaatacgc tctatggtga attaatttcg
     2701 cttttaagaa aaaaatacac tcaggaagtc gatgagaaag aagagcaaat cgcattacgt
     2761 acttacgcca tacgttattt agacttttat gctaaattct gtggttgtga taatcctttt
     2821 gataaaacca ttgcacaact gtcggaactc tatccggaat ttatgagcaa ttttttgcaa
     2881 tcaagtcatt tttcatcaaa aacaggtttg atgaaagaga ttgtcgtgaa ttcattggat
     2941 aatttattta aagaacatcc ttatactaaa tcgattgatg cttcttatat ctatagggtt
     3001 aaagagagca ctacttgtta tgaagatgac tgggcaaagc cagtttatga ttagtaataa
     3061 gaaagatgct ggttttcctt gaattcgttg aagatgacta ctaacgaggc gagggcgttt
     3121 gatctacgtt accttctgca ttatccaaag tatctgaaaa cacggaatct gtttcatctg
     3181 tatcacccaa aaaatcaaaa tctacgggcg taccgatgcg ttctggttcc agttgtttaa
     3241 tgatgttagc taaataaatt gtggttttgt gattaacgaa tgatgataca gcaatgactt
     3301 ttttattaag taagaggtga taatattcat gaactccatc gttccctttt tgaatagcaa
     3361 tagatggatc agcgggcgag ataaaataag tattgccggc ttttttagat gtaatgcgtg
     3421 accccagttt ttcaaataaa caatccatgc cttcttcagg aaaaagagga aactcctctt
     3481 tggtatctga aatggtaaaa aaggaataat caaaaaaaga tgattttttc atataggagc
     3541 tactattaag cataaatatg cccaaaatta tatcatgata aacaatttaa aggtatttga
     3601 attgctaatc accgacgcta atgtaacaaa tggaagaata tacttgagta gcaaatagag
     3661 taataacgtt gaggcaaatt tttgtagtaa ttcacgatga gcgtgcgtta taaagttatt
     3721 tgaaatgagg cggcagtcgt aaatggaata caaacaagtg catgaacatt gtttttaata
     3781 atctcccttt atcttttccc aattaatcac agaaagcgta tttacttttt tgttctaacc
     3841 atttagttta cgagcctggt atttggaaat ggacttttaa aatgactaaa aaagtaacga
     3901 atattgcgat aattggtggt ggaacaggat taacttctgc ctgggctttg gaaaatcaac
     3961 aaaaatttca tgttactgta tttgaggaaa atgatcgctt aggcgggcat atccacagca
     4021 tcaaggttaa taatgtaatc ctggaagggg gggcagaatt catagggcca cccacattgt
     4081 atcccaatgt gcatcgattg tttcaatatc tgggagtggc tttagatcag tttgaattaa
     4141 atatggattt tgacgatctg aaacaaaagg atcatattgt tttaccccct ttgtatcata
     4201 catcaagtgg cagatctgag gacacttcat caattctata tacattatcc tgtggtttat
     4261 ttggcaagag aaggaaacag aatgaaaccc gtgtttcagt ggatactcta ctcactgaaa
     4321 tgtacaattt gcttgagatg aaccacttaa ttatggatgc caggaacaaa ttactgcatc
     4381 cagataattt aataacatta gagcaattta taaaagagtt taaagagaaa tgtgtacaca
     4441 cactttcacc tatagacaag tttgctgagg agttcttgta tcctttgatt gcatcaggat
     4501 ggggagtatc aattgaaaca attaaaacat ttggtgccca ttatgctatg aactatctgg
     4561 ctgcaggaat gaattggttt gatgcgccag aaggtttgag cagctatatt gatagaatgg
     4621 tggcgcaatg cactaatact caatttaacg ctaatacggc tataaaaaaa ttaataccaa
     4681 taacaattga tggaaaaata aaataccaat tattgaaaag ggatggcaca ttcgtttgtg
     4741 atgccactgg aagcccaatg atttatgatg atgtggttat ctccacaccg gcttatgtaa
     4801 cgagtgaact gctgtctggt attgaaagta acacgataaa agtattgcgt gaaaaacttg
     4861 ccaacgtaac ctactatgac acgacagtag tatttcatca ggatcccgaa tatctgtctc
     4921 cctataggac agttgtgcac agccgatttg atggggctca atcagcaaat accatgtgca
     4981 agccctggaa atttaataat gaagaaaccc cgataatgaa aacctgggtt ttgcccgggc
     5041 aagcaatgcc taaaaacgta ctgagagaag ttcattataa acacccggta atggataaaa
     5101 attactatga agcacagcaa gctttacatg ccgctcaagg tgaggctggg ttatggcatg
     5161 gtggtattct tgctggattt aatgattcgc atgaaagtgg tattacggca gcactccaag
     5221 ttgctgcgca attgaatcac cgtgaacatt gtttacataa aaatgaacgt ctcgcactat
     5281 tccccaacct ggttgattcg gttctgtctc ctaaattgtc tacgggtaga gtcgtggagg
     5341 ttgaaggagt agtttcttct tccatgtcat atacttaaag agctttcacc atatttatta
     5401 aattaatatc gctctcaaag acaaactgag ggcgatattg gtgccaaatg agtttgcatc
     5461 cttaaactaa tcgctcatat gtgattccaa tatagaatgg tttgtactta atttttcttg
     5521 cgattttgat tgcaagtggt ttcctggaag cgttcgaaat tacccatgac actatcaaaa
     5581 agcaacaagt cattggctgg aatataacac atatactgca atttacattg cagtattgat
     5641 atttactgga ttcaattgat atcggttcat caataccagt tgggtgatac ttaaataacc
     5701 cattagaaat ggttgttgat ccattacata attcaccagt tttttatgaa ttaaagaaac
     5761 agtattgggt gttttatcaa aggaatagac ttgaggttga taattaaaat catacctgtc
     5821 ggggtgtaat aacatttgtc caagtggatc tagtgcttgt gaggttaggc aaaaaataat
     5881 attcgtttct ggatgtatct taaagtaaga tttgactctg gattgtactt gattaggatc
     5941 agtacctaca tcaagttcct caaaaaagat tcctttatct tgaagaatgg tcttaattcc
     6001 ataggcacgc ttttcgagcc ctatatggcc gggttgtggg ttaagaacta gtgctctttt
     6061 agcgcttgga gttaattcca gagctttttc accaagtttc ttgcctgcga gtaggttatc
     6121 agaacctaaa aagaccaggt aaggattttt tgttttgtct tttggtctgg tatcaacggc
     6181 aataacagga atattaagtt tatttgccct ttgcaggctt ttgctaaaag ctgtgtctga
     6241 aggaatggta gtagcaattc cagaaggata ggtagccagt gcgctctcta tgaattgaac
     6301 ctgtttgggt acatcattgg ctcctggagg agctaaaatt tgtaaatcga ctttcagttc
     6361 ttcagcagct ttttttgctc cctggaataa agatgtccaa taaggatctt gtgaaccatg
     6421 ggttatcaaa taatatttat ctctcgcaaa gacagaggcg cttatcagta gcgagaaaca
     6481 caagagagtt gatgccaatt ttttcatagt ttaaccctta atgagcgtgt tagttaattc
     6541 cattatttct attgttccgc aactaagctt gatcactttg tgtgcggtat tttgtatatg
     6601 agctggatta tgagttataa aaacaattgc aattccggct tgagctatat tttttatgat
     6661 ctgaaggact ttatctgctt gcgcaggtga gagggcactg gttggctcgt caagaataag
     6721 tagctttgca ttaaaatatt ttgcgcgaca aacgactagc atttggcgtt caccaccaga
     6781 tagttttttg accggcagat caatatttgg aaggcataca agcccaaagc tttgcaggga
     6841 ctgacttgct atatgttgca taagcctgat gtttaagaat ttgaaaggac ctattttttt
     6901 atttatttca ttacctaaaa agaaattacg ccatatagat aattcatcaa taagcgctaa
     6961 ttgttgatgg acaatctgta tacccaggcg tctcatttca aatggagcat tatattggtt
     7021 gctataacat aagggctgct cctgccaata aatgtttcct ttatctgctt gaatataacc
     7081 tgaaatgatt tgtaccaggg ttgatttacc tgctccatta tcaccgatta aagcagtaat
     7141 ttccccggga tataagcaaa aagatacttt attgagaata cgatgggagc cgtaactttt
     7201 ttcaatattt tctaacctga gtaaaggttg agtttgatgg ctatttatca tgagtcagat
     7261 ttcctcagat aaacattaat agtcatcgca aagattaaaa taagtccaat aaaagatcga
     7321 taccaataag ttgaaacacc aatttgtact atgccggtat ctacagtgct taataataaa
     7381 gtagccaata gcgtacttat tatggatcct tgacctcctt ttagtgaggt accaccgatt
     7441 acggtagctg ctatggcata taattcatat tgttcacccg caatggggga taaactatta
     7501 aggtggctaa attgagttac tccggaaaat gcggctatta ttccacaaca cacaaaacaa
     7561 aagaatttaa ctcgaattgt atttatgcca gatagataag cggaatcaca attgttacca
     7621 gtggcaacta tatgattccc cagttttgtc caattaagaa gatagattag ataaaaacca
     7681 atagcaaacc accaaataaa agaagacaat aaattttgtg ataattcacc tgctaatact
     7741 tgcataacac catttgtgtc ctcaacagat acaggcaaac cttgggtgta caaaaggata
     7801 agactacgta aaattaacat gcttcccaaa gttacaataa atgaggggat tttaaaaaag
     7861 acggtgcatg cggcattaat taatcctata caggctccta ttgccaaagc aattgttaaa
     7921 gctaaaaaac tattgattcc taataacgta agtgaaccga atagcaagcc agataaagca
     7981 aaattcgctc caacagagag gtcaaactct cctcctataa gcagaagagt aactccaagg
     8041 acaatgatgc caatatcaga ggcggatgcc aaaatacttg cccaagtagt aagggttaaa
     8101 aagtcagaag agaaaatagt gaatagacta acaaggctaa taaatggaac tagaacacca
     8161 aataaaaaat aatggtgtat tttatacatg agactatccc tggaaattta ttgtggaaag
     8221 tgtacacaaa atattatcga tctttaagca caattttcag agaacattga aggcaagttc
     8281 aacccgggta ccattgattt ttactcagat tactttatag tggatttctc tttaaacgcg
     8341 tcatgctttg aatggatttc attttatgat ttcgaaaaaa ataactcaaa tttcattttc
     8401 ccttgctctg gctctgatcg ttggggtggc agaagcgaag actactcgcc ctgcggatga
     8461 acaacaacgt gctcgctcta tttataaaca atttatcgaa atacaatcag gatttactac
     8521 cggttcaaca acgccgttgg ttgaggtggc agtaaagtac ttaaagaaag ctggtttttc
     8581 caatgaggac attttcgttg gtggagccag tccacaaaaa gccaatctgg ttgtacgtta
     8641 tcgcggtact ggggacaaga aacccttgtt attacttgcg catacggacg ttgttgaagc
     8701 caaagcttcc gattggagca tggatccttt ccaactgact gaaaaagaag ggtattttta
     8761 tggcagaggc actttggatg ataaagcgca agcggctatt tggatagcca acttaatcca
     8821 atataagcag gaaggattta aacccaaacg cgatatcatt gttgccttga cggctgatga
     8881 agaaggaagc agcccataca acgggattag ttggctgatt aaaaatcaca aggatttaat
     8941 cgaggcagat ttcgctctta atgagggtgg atggggtgat ttggccaatg ggaaaaaaat
     9001 atcacaaaat atccaggtga gtgaaaaata cattgtcaat tacaaccttg aggttcgtaa
     9061 taaagggggg catagttcgc tgccaaccaa agataatgcc atttatcgtc ttgcaggggc
     9121 tttagagcga ctgtcaaaat ttaattttcc tttaaaaacc aatgatgtaa ctgcggccta
     9181 ttttaaacaa atggcggcta ttgagacagg gcctctgaaa acagaaatgg ttgaagcaag
     9241 caaaggctcg aagcaagcta tgcaacgttt agctgatagt tcaccgcaat ggaatgccat
     9301 tttacgaaca acctgcaccc ctaccttact tgaaggaggg catgcaatga atgcattacc
     9361 acaattagcg gctgttacca taaattgtcg tgtgctccca gaagattcac ctgaaatggt
     9421 tgagcaatct ttgaagacag ctattaacga tccagaggtt acactaaagc gcattggcaa
     9481 attgtccaga ggtccgagct ctccacttag tcctgaaata ttaaaaacaa ttactcagct
     9541 cactcaaagg tattggcctg aagttcctac cattccaatt atggttactg gtgcaacgga
     9601 tgggcgctat ctgcgatcag ttggaattcc tacctatggg gtgatggggc tatttttaga
     9661 tcgcgatgat ttccgagccc atggtcgtga tgaacggatt agtgtcgaat ccttttatga
     9721 agctcatgca ttcctttatg atttggtgaa acaactgtca agcaatgtaa cttaagaatg
     9781 gtttttccag tcggggcttt gctaaaggta ggatattgat ttgaggccct tgggtcagtt
     9841 ttgcgcaatt tcccaatgtg aaagcttgta aaaacaacga atgtttattg agatatggaa
     9901 aacaggtata ttttaaaggg cttaaaggtc attgatctga gttcggttct tgcaggcccc
     9961 tctgtaggta ctttttttgc tgagttgggt gcatcagttg ttaaaatcga acatcccgta
    10021 cataaggatg tgacaagaac atggaaactc cctggagaag atcctgactc tgagatttca
    10081 gcttattttg ctagtgttaa ttttggaaag gaatatttgt ttttagatct catgaagcaa
    10141 gaggattatc tctgtttcct taatctcatc gcagaatctg atattttaat catgaatttt
    10201 aagaagggag atgatgtaaa gctgcgtata caagatgatc atctacacag tattaattcg
    10261 cgccttatca ttggaaaaat caatggctac ggtgacgaaa gcgatcgcgt tgcctatgat
    10321 cttgtgcttc agggtgaaag cggttttatg tcaatcaatg ggacacagga gagcggcccg
    10381 gtaaaaatgc ccgtcgcctt aatcgatgtc cttgcagccc atcatctgaa agaagccatc
    10441 cttctggctc tctatcagcg ggaaaaaagc gggaaaggca gggttgtctc tgtttccctt
    10501 tatgatgctg ctgttagcag tcttatcaat caggcatcga attacttgat gactgggcag
    10561 gtgccgcagc gcatcggatc actgcatccc aatattgccc cctatggcga attgttccaa
    10621 acatctgatg gggcgcttat catactggca ataggctcag ataggcattt tgtaaaacta
    10681 tgcaatatcc ttgggctaaa agatttacca ggaaaagacg aattcaggca caatcaaaac
    10741 agggtgagga atcgggagca actcgctgta ctaattgctg aacaaacaga gaaactccag
    10801 agcagtgagc ttctcgaaat gttgcacagg gaaaatattc ctgcaggcaa aattatggat
    10861 ctcaaggacg ttttcgataa tgagcgtgca aaatccctca ttcgcaagga agttattgat
    10921 gatgttccca cagcgcgcgt tacatccgtt gtttttaaac agactttata actaaagggg
    10981 agccattgaa ttatgcagat gaataatatt agtcctcatg cataagctgt ctcttcattg
    11041 ctgcgctgca aacgtctctg cagcgcacat tagaaagcat acgcgctaaa cggtttttgc
    11101 tgatttcatt agttacaaac aatgtttatt aggatttctc ttcatacaaa gattggcaaa
    11161 gtaataccgt aaatcggata cgaagatatc cccttcattt tccattacga aaattctttc
    11221 aggttgcaat tcaaggtaat tggatgccat aaggatggag taataaactg atccggcata
    11281 ggagaaaatc catttgtcga aaaagggtag aatcatatca ggatcgttag aataaaatcg
    11341 ttgataaata tcgctaatta attcctttct cacgtcaaaa ttgcttttaa aataaaaatt
    11401 gttcctatcc tgacgataaa gcgtgaatgg tgttttatcg gggttacttt ttaaaccggc
    11461 attaagattc atcgatacaa tgatgccttt ggcattttca atttgtaatg ttgtcgtatt
    11521 gaataaattg tatccattat attctttcag ataggatttt aaataatcaa cagcgttatc
    11581 tgtcaatgga tcgaaataac tttgaataga gaagtttatc gcgtgctgtt ccggatcatt
    11641 gacatcatag ccacagctga cgtaagtgtt gtaagtaaac agattagggg agattttttt
    11701 tgaaaaaact tgatctattt cattttctac atcatcacag ctcagttcca atcctgtaag
    11761 attaccgctg actcgaacaa tttgagttgg aaaatcaata gttctttgag ccatttgact
    11821 aagattaggc atttcctgtt cattgctata gtgcctgact acggtatttt tattctgcgg
    11881 caatggcgaa aaaataaggc catctgtgtt gttatcagaa ttggcaaaag caagaatggg
    11941 agataaaagc aaagcgccta ataaataacc tggtttcata acaaactcct ttttaaatta
    12001 attcagaact ccattcaaat gattatccga ttagaatact gtttaataat tgttctaatc
    12061 ggatgggaca gacagtatat cttatctggt ttgaagatta gatcctataa ccagcataaa
    12121 taaaacagat gcgatgagcg catgtgagcg acagggaata gcaaattttt ttactttaaa
    12181 aagccataga taactattga gaagtatatg gttttgaatg gatgggcaat accaagaagc
    12241 aaatgaatgt aatagtttat aaaagaacac aatg
//
LOCUS       DACVWI010000088        12253 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.088, whole genome shotgun sequence.
ACCESSION   DACVWI010000088 DACVWI010000000
VERSION     DACVWI010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 12253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12253
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.088"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(58..1560)
                     /locus_tag="JBH85_08835"
     CDS             complement(58..1560)
                     /locus_tag="JBH85_08835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAU0946306.1"
                     /translation="MITIKELYIQKQENLKTALSKLDATAQGVLFLVDSDEHLIRTVT
                     DGDIRRLLLKGFTLDSTLEELSEHSSKALPVSATIQDAYHLMQEYELDHIPVIDESNR
                     PIRLIHRRELSSNILLSSPHIGEHEQQYVQEAFATNWVAPLGPNVDSFEKEVAEYINI
                     KSAVALSSGTAAIHLALVLLDVKPGDIVFASSFTFVATVNPILYQGATPVFIDSDLDT
                     WNMSPVALERALRESKAKNQMPKAVIIVNLYGQSANYDALCQLCNEYNVPIIEDAAES
                     LGATYNNKYSGTFGKLGVFSFNGNKIITTSGGGMLVSEDESLIQRARFLSTQAREPMP
                     HYEHTVVGYNYRMSNVLAGIGRGQLKVLEKRVKARRAIFERYKQALESYPFIDMMPEI
                     TQGYSTRWLSTLVIKPTPNKIKPEEVIEQLKPFNIEARRTWKPMHRQPLFAGSKYYPH
                     DEQFSVSDYLFDHGICLPSGSNLTPRDIDRVIHCLNDIFIKYKQNNFEVA"
     gene            complement(1571..2179)
                     /locus_tag="JBH85_08840"
     CDS             complement(1571..2179)
                     /locus_tag="JBH85_08840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HAU0946307.1"
                     /translation="MHTNLKIIGCGGHCKVVIDALSLTQHSLQVSLCDSNKSLLGQEV
                     CGVLVDSTMDSLADYIGYVHVSIGNNQARKNVIDLMNSNANLFTIIHPAAIIAKSARL
                     GAGSFIAAQAILGPECQVGEGCIINHSAVVDHEVIVGSCSHIAPNSTLGGRVKIGERV
                     LIGAGAVVLPGVTIDDGAIIGAGSVVVKDVKENAVVKGVPAV"
     gene            complement(2169..3302)
                     /gene="neuC"
                     /locus_tag="JBH85_08845"
     CDS             complement(2169..3302)
                     /gene="neuC"
                     /locus_tag="JBH85_08845"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HAU0946308.1"
                     /translation="MTRKIIYVTGTRADYGLMREVLKRLHQSEDIDLSICVTGMHLDA
                     LYGNTVNEIKADQFSICGIIPVDLDNAQHSSMAKAIGHELLGFTEVFESETPDVVLLL
                     GDRGEMLAAAIAAIHLNIPVVHLHGGERSGTVDEMVRHAISKLSHYHFVATEASKQRL
                     IRMGEKEETIFQVGAPGLDEIMQYKTSTRDVFNQRYGFHPDKKICLLIYHPVVQEVDS
                     IKIQFQSVIQAALATNLQIICLEPNSDTGGHLIREVIQEYIDHPDVRIIKHLHRPEFI
                     DCLANSDVMLGNSSSGIIEAASFNLNVVNVGSRQNLRERSDNVIDVDVTYDAILTGLR
                     EALNKPKIKYSNCYGDGKTSERCYQLLKTIPLHSQILNKCNAY"
     gene            complement(3302..4324)
                     /gene="legI"
                     /locus_tag="JBH85_08850"
     CDS             complement(3302..4324)
                     /gene="legI"
                     /locus_tag="JBH85_08850"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HAU0946309.1"
                     /translation="MTCFIIAEAGVNHNGDLQLAKELVYAAKESGADAVKFQTFKADT
                     LVNKTVEKAEYQKNNAPESSTQYEMLKALELSEEDHYLLSELANSLGIEFMSTGFDEQ
                     SIDFLISLGVKRLKIPSGEITNVPYLQHCASKKLPLIISTGMCDLQEVRVAIDTVKPY
                     YGNSLSDYLVLLHCTSNYPAAYQDVNLKAMQTLADEFQLPVGYSDHTLGILVPTLAVG
                     MGACVIEKHFTMDKSLPGPDHLASMNPEEMKNLVQSIRDAETVLGSGEKKPSDNELPI
                     RALVRRSITLRRDLVKGAQISKEDLILLRPGTGIAPSEISNIVGARLSMNLSAGTTLL
                     WEHIEA"
     gene            complement(4321..5019)
                     /locus_tag="JBH85_08855"
     CDS             complement(4321..5019)
                     /locus_tag="JBH85_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HAU0946310.1"
                     /translation="MRILAVIPARAGSKRLPGKNTRLLAGKPLIAHTIVAALQSSCCE
                     EIVVSTDSKQIADVAVQYGASVPWLRSEDLATDTSDVIHTVIDLLFKFQQMEVFFDSV
                     LLLQPTSPFRKPETIRHAVEIHQATGKSVVSVSPISLKPSWCRSIDSQGNLVKPELFQ
                     DLEIYCNENPIYKLNGSIYIATAKQIIENKSFYSEPTKPLLLNSISESIDIDTPIDWA
                     LTEKLMELNQEALV"
     gene            complement(5032..5673)
                     /gene="hisH"
                     /locus_tag="JBH85_08860"
     CDS             complement(5032..5673)
                     /gene="hisH"
                     /locus_tag="JBH85_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HAU0946311.1"
                     /translation="MSSVSIVDYGVGNLLSVARAFQYFDASVNLVSTPEEIMSADRLV
                     LPGVGAFEDGMKGLTTLNFIEPIKQFARSGKPFLGICLGMQMMLSRSTEFGQHEGLDL
                     IAGEVVSVPSHGVDGQLHKIPHIGWNELVSTSEGEDWCHTILKNIPLNSSVYFVHSFM
                     AMPSNPKKRLADTLYDGQAISAVIKDENMYGCQFHPEKSGEVGLNIIQQFLQI"
     gene            complement(5670..6434)
                     /gene="wbuZ"
                     /locus_tag="JBH85_08865"
     CDS             complement(5670..6434)
                     /gene="wbuZ"
                     /locus_tag="JBH85_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl amidation-associated protein WbuZ"
                     /protein_id="HAU0946312.1"
                     /translation="MMSNVRLIARLDIKGPNLIKGVHLEGLRVVGNPNEYAMAYYAQG
                     ADELIYMDTVASLYGRNNLSEIVKTTAENVFIPITVGGGIRSVDDAKQLLRCGADKVA
                     INTAATKNPTLISDVARRFGSQCVVLSIEAKRTVNGRWEVMTDNGREHTGMDVVDWAR
                     NGEEFGAGEILLTSIDQEGTRKGFDLELVKQVSSMVSIPVIASGGMGKLEDLTEVVCE
                     SKADAVAMADVLHYKRIGLPEIRKYALDNGIHVRVL"
     gene            complement(6431..7813)
                     /locus_tag="JBH85_08870"
     CDS             complement(6431..7813)
                     /locus_tag="JBH85_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HAU0946313.1"
                     /translation="MSNARIGIDMSKIYAPKSIDLSSFQLPDEKLQTKYGLPHKVEFC
                     KSCVISNQRPNSAVEYEHKKESKKHTIHFDDEGICDACRVAERKKSTINWEERDRQLR
                     ELCDRFRSKDGSYDCVVPGSGGKDSFYAAHILKYKYGMNPLTVTWAPHMYTPWGWRNF
                     QSWIHAGFDNHLFTPNGRVHRLLTRLAVENLFHPFQPFMIGQKAYAPKMALLHKIKLV
                     VYGENEAEYGNPIGDTESAKRDWKYFTADDKSKIFLGGTSVQELKSDFGLNDNDLDAY
                     LPADPQQIEEQQVEVHYLGYYLKWHPQSCYYYSVEHGGFEASPERTPGTYSKYNSIDD
                     KIDDFHYYTTLTKFGIGRATYDASQEIRSGDITREEGVALVKRFDQEFPERFAEEIFK
                     YLSINPKEFPIASQMFEQPIMDRAYFMALADTFRSPHLWKKEGEQWKLRHQVTNLEKT
                     KAEYLDLETV"
     gene            7973..8791
                     /locus_tag="JBH85_08875"
     CDS             7973..8791
                     /locus_tag="JBH85_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0946314.1"
                     /translation="MSLKAMYNQIAENYATANRFGSISESHHVAIEQMRKFHLGLKPH
                     YKILDLGVGNGSFLQKLHHLMPMANFTGIDVSSEMLKRASEALPLTTIEGSAAEANKF
                     LPAHSQDLVLAHFINAYIPINVLFDEAKYLTRANGHFSLITTTYDSFPVAQQQLANFI
                     AQDTILSRVVGHYYKSIVKNTTVAANLDELLLAFKQHQFNILDHQRIEIPITLNNIDE
                     LALFGIEGTWFLNTLSIRMLPKYFLIQRLKRLFSKIFTFPYHDTHIIDVVLARK"
     gene            8830..10338
                     /locus_tag="JBH85_08880"
     CDS             8830..10338
                     /locus_tag="JBH85_08880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HAU0946315.1"
                     /translation="MKLISQAVKNYLPELSLRQKQTNNIIFITFWSQFSVYALNTILV
                     LFLTRPLIAQGLGYSQAKAYAFIGVTQATGYLMPILGGYMADNIIGVRRSILLGSIML
                     ACAYLLVMLSGYTISSLGDQLFIIAFAFIPATNSLLMGTASSMVSHIYSDDAIKAKSA
                     MTYYYMAINVGALLATMIAPVLLESRYGPLSVLTLTFIGKSIAALNFAKRYSIYDSVI
                     WGMDKSKFSNQGLLRLVAYIAAIYSLTLYAYTHVYIASTLIGAGCAIGILWFLIKTIM
                     LKGETRSKQMIAVLLIIEAIVFFIIYNQMNSTLVLFAENNSDLSFLWFKISPAQYQML
                     NPLLILLIGSQLPRFYRFFSRFTIPYQFAAGTILSGIALLVMAFAAQNAINGLVNGNY
                     IALTYILISIAELWVSAIGLSMIGLYCDARAIAFAMGVWYLASSMSNAISGRIAGWVA
                     IPENINSALESLPYYKNYYLIMGISALGLGILMYFVAYYLHKIMKRRGIELA"
     gene            10739..11020
                     /locus_tag="JBH85_08885"
     CDS             10739..11020
                     /locus_tag="JBH85_08885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HAU0946316.1"
                     /translation="MFWVYILQCSDKSYYTGQTDNLEKRLTQHQDKMIPGCYTSTRLP
                     IQLKFSQEFMSREEALSAERQIKGWSRRKKEALINGDWQALSDYSKRKN"
     gene            complement(11174..12163)
                     /gene="lipA"
                     /locus_tag="JBH85_08890"
     CDS             complement(11174..12163)
                     /gene="lipA"
                     /locus_tag="JBH85_08890"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HAU0946317.1"
                     /translation="MGKLIDIPIVVESGQKYKTSQGVTAIKDGIKSSGQDHERLPKPK
                     WLRIVNHTTPAYSQVKEQVQKHRLATVCEEAKCPNISECWSHGTATIMLMGAVCTRAC
                     RFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRA
                     IKKRSPRTKVEALTPDFQGSERDVAVLLDSGVDVFAQNVETVERLTHPVRDNRAGYQQ
                     TLNVLAFAKKYRPDVLTKTSLMLGLGETDEEIIQTMDDLRTHHVDILTLGQYLQPTKN
                     HLPIARYVTPETFSELRQIGLKKGFFEVASGPLVRSSYRADRVFKRDNLGLDV"
BASE COUNT         3597 a         2656 c         2147 g         3853 t
ORIGIN      
        1 attccttaat atttaaatct tttactacct gtatccagtt ttcactagaa caaataatta
       61 agctacctca aaattgtttt gtttatattt aataaaaata tcattcaaac aatgaatgac
      121 tctatcaatg tctctggggg ttaaatttga cccggaagga agacaaatac catgatcaaa
      181 caagtaatct gaaacgctga attgttcatc atgaggatag tatttagagc ctgcaaataa
      241 aggctgtcta tgcataggct tccatgttct tcttgcttca atgttaaatg gctttaattg
      301 ctcaatgact tcttccggtt ttatcttgtt tggcgttggt ttaataacca atgtcgataa
      361 ccaacgagta ctgtatcctt gggttatctc tggcatcatg tcaataaatg ggtaagattc
      421 caaggcttgc ttatatcgtt caaaaatagc tcgtcttgcc ttaacccgtt tttccaatac
      481 tttcagctga cctctgccta taccagcaag cacattactc attctgtaat tatacccaac
      541 cacagtatgt tcataatggg gcattggttc gcgagcctga gttgataaaa atcttgctct
      601 ttgtatgaga ctctcatctt cagacaccaa catgccgcca ccagacgtgg taatgatttt
      661 gttgccatta aatgaaaaca cgcctaactt gccgaaagtc ccgctgtact tgttattata
      721 ggtggctccc aaagactccg ccgcatcttc tataattggc acattgtatt cattgcataa
      781 ttgacataaa gcgtcataat tagcactttg tccatataaa ttaacaataa tcacagcttt
      841 tggcatttga ttttttgctt tactttctct taatgcccgc tcaagagcaa ctggagacat
      901 attccaggtg tccaaatcag aatcaataaa taccggagtc gcaccttggt ataagatagg
      961 attcactgtg gctacaaaag taaagctgga tgcgaacaca atatctcctg gtttcacatc
     1021 gagtaatacg agtgccagat gaattgcagc tgttcctgag cttaaagcca cagctgattt
     1081 tatattaatg tattccgcca cttctttttc aaaagaatca acattggggc ctaaaggggc
     1141 tacccagttg gtggcaaaag cttcctgtac gtattgctgc tcatgctcac cgatatgagg
     1201 cgaggaaagc agaatattgg aagagagttc tctccggtgg atcaagcgta tggggcgatt
     1261 actctcatcg ataacgggaa tatgatctaa ttcatattcc tgcatcaaat gataagcatc
     1321 ctgaatcgta gcagagacag gtaaagcttt tgatgaatgc tctgataatt cctctaaagt
     1381 agaatctaat gtaaatcctt ttaatagcaa tcttcggatg tcaccatctg taactgtcct
     1441 tattaaatgt tcatcactat ctaccagaaa taacacacct tgagctgtag catccagctt
     1501 gctcaaagca gttttcagat tttcttgttt ttgtatatat aactctttga tagtaatcat
     1561 tttattcctt ttaaactgcg ggtacgcctt tcacaacagc attttctttt acatccttca
     1621 caacgactga gccagctcca attattgctc catcatctat agtcacacca ggcaaaacaa
     1681 ctgctccagc tccaatcagc actctctcac caatcttgac tcgcccacct aaggtgctat
     1741 taggcgcaat atgtgaacac gagccaacta tcacttcatg atccacaacg gcactgtgat
     1801 tgatgataca tccctcaccc acctgacatt cagggccgag tattgcctgt gctgcaataa
     1861 aggagcctgc accgagcctc gctgatttcg caataatggc agccggatga ataattgtaa
     1921 acaagtttgc attggaattc atcaaatcta taacattctt tctggcctga ttatttccaa
     1981 tgctgacgtg cacataacca atatagtcag ctaaactgtc catagttgaa tcaaccaata
     2041 ctccacacac ctcctgaccc agcaaactct tattgctatc acaaagtgaa acttgtaaag
     2101 agtgctgagt cagtgataaa gcatcaatca ccaccttaca gtgtccacca catcctatta
     2161 ttttcaagtt agtatgcatt gcatttattc aatatttgtg agtgcaaagg gatagttttt
     2221 aacaattgat aacacctttc actcgttttt ccatccccgt aacaattaga gtattttatc
     2281 ttgggtttat ttagcgcttc tcttagacca gtcaaaatag catcataagt aacatcaaca
     2341 tcaatgacat tgtcgcttcg ttctcttaaa ttttgcctgc ttccaacatt aactacgttc
     2401 aggttaaatg aggctgcctc tatgatgcca ctactggaat ttcccagcat cacatcagaa
     2461 tttgcaagac aatcaataaa ttccggacga tgtaggtgct tgataattct aacatcagga
     2521 tgatcaatat attcctgaat cacttctcga attaaatgac cacccgtatc tgaattcggc
     2581 tcaaggcaaa taatctgcaa atttgtagcg agtgctgcct gaatcacgct ttgaaattga
     2641 attttaatcg agtcaacttc ttgaacaacc gggtgataga ttaataaaca aatttttttg
     2701 tcaggatgaa atccataacg ttgattaaac acatcacgtg tagacgtttt atactgcatg
     2761 atttcatcca agcctggagc accaacctga aaaatggttt cttccttctc acccattcta
     2821 atcaatcgtt gtttggatgc ctctgttgcg acaaaatgat aatgagataa tttggaaatc
     2881 gcatgcctta ccatttcatc aacggttcca gagcgctctc ctccgtgcag atgtacaacc
     2941 gggatattta aatgtatcgc tgctatagct gcggccaaca tttcacctcg atctcccagc
     3001 aataaaacga catcaggagt ttcactttcg aatacctcgg tgaatcccaa aagctcatgg
     3061 ccgatagctt ttgccataga actatgttgg gcattgtcaa gatcaacagg aataatgccg
     3121 catattgaga actgatctgc tttaatttcg ttaactgtat ttccatacaa agcatcaaga
     3181 tgcataccag tgacacaaat cgataagtca atgtcttctg actggtgtaa tctttttagt
     3241 acttctctca tcagtccata atcggcacga gtacctgtaa cataaattat ttttctggtc
     3301 attacgcttc aatatgttcc cataacaaag tagtacctgc agacaaattc atacttaatc
     3361 gagcccctac aatatttgat atttctgaag gcgctatccc ggtaccgggt cttagcaaga
     3421 tcaaatcttc cttactgatt tgtgctcctt tcaccaaatc acgtcttaaa gtaatacttc
     3481 ttctaaccag agctcttatc ggcagctcat tatccgacgg ttttttttca ccacttccca
     3541 aaacagtttc agcgtctctg atggactgca ctaaattctt catttcctct ggattcatag
     3601 aagcaagatg atctggacca ggaagagatt tatccattgt aaagtgcttt tcgataacgc
     3661 acgcccccat tcctactgct aatgttggca ccaaaatacc taaagtatga tcagaataac
     3721 ctactggcaa ttgaaattcg tcagctaatg tctgcatggc tttcaaattc acgtcctgat
     3781 aagctgccgg ataattagag gtacaatgca acaaaaccag ataatcggat aaagagtttc
     3841 catagtaggg ttttactgta tctatggcta ctcttacttc ttgtagatcg cacatccctg
     3901 ttgagatgat taatggtaac ttcttactgg cacaatgctg caagtaaggt acattagtaa
     3961 tttcgccaga agggattttt aatcgcttta cccctaaaga aataagaaaa tcaatgcttt
     4021 gttcatcaaa accagttgac ataaattcaa tgccgagtga attggctaat tcacttagta
     4081 aataatggtc ctcttctgaa agctccagtg ccttgagcat ctcgtactgg gtagaggatt
     4141 ccggggcatt atttttttgg tattccgctt tttctactgt tttattgacc aaggtgtccg
     4201 ctttgaaagt ctgaaacttt actgcatcag ctcctgactc tttggctgca taaactaatt
     4261 ctttagccag ttgaagatca ccattatggt ttactcctgc ttcagcaata ataaaacaag
     4321 tcatactaga gcctcttggt ttaattccat taatttttct gttagagccc aatcgattgg
     4381 cgtatcgatg tcgatggatt cactaatact atttaacaat aaaggtttgg ttggttcgct
     4441 ataaaaactc ttattttcga taatttgttt agctgttgca atataaattg acccatttaa
     4501 tttataaatt ggattctcgt tgcaataaat ttccagatcc tgaaaaagct ctggcttaac
     4561 caaattgcct tggctatcaa tgcttctaca ccaagaaggc tttaaagaga taggactaac
     4621 tgaaacgaca ctttttcccg ttgcttgatg tatttcaaca gcatgtctta tggtttctgg
     4681 cttcctgaat ggagaagttg gttgtaaaag caatacactg tcaaaaaaaa cctccatttg
     4741 ctgaaactta aacaggaggt caataacagt atgaatcaca tccgaagtat ccgtggctaa
     4801 atcttccgat cttagccaag gtactgaagc cccatattga acggcgacgt ctgctatttg
     4861 tttactatcg gtcgaaacaa cgatttcttc acaacaagac gactgcaagg cagcaacaat
     4921 agtatgtgca attaatggct ttccggcaag taatctggta tttttaccgg gcagcctctt
     4981 tgagccagcc cttgccggga ttactgccaa tattctcatt tttaatgcac cctaaatctg
     5041 caaaaactgt tgaatgatgt ttaaacctac ttccccgctt ttttcaggat gaaattggca
     5101 tccgtacata ttttcatctt ttattactgc gctaatagcc tgaccatcat ataaagtatc
     5161 agccagacgc tttttaggat tactaggcat ggccataaaa gaatgaacaa aatatactga
     5221 agaatttaat ggtatatttt tcaggatagt atgacaccaa tcctcgcctt ccgaggtgga
     5281 aaccagttca ttccagccta tatgaggtat tttatgcaat tgaccatcaa ctccatgtga
     5341 aggaacgcta acaacctcgc cagctattag atccaggcct tcatgttgtc cgaattcagt
     5401 acttcttgag agcatcatct gcatgccaag acatattccc agaaaaggtt ttccactccg
     5461 cgcaaattgc tttatgggtt ctataaaatt taatgtagtt aatcctttca tcccatcttc
     5521 aaaagcgcct actcctggca aaaccaaccg atcggcactc ataatttcct cgggtgtgct
     5581 cactaaattg acagaagcat caaaatattg aaaagctcga gccacactta ataaattgcc
     5641 taccccataa tctacaattg aaactgaact cataagactc tcacatgaat gccattatct
     5701 aaagcatact ttctgatttc aggtaaacct attcttttat aatgcaaaac atccgccata
     5761 gcgactgcat cagccttaga ctcacaaacc acttcagtta aatcttccag cttacccata
     5821 cccccacttg caatcaccgg gatagaaacc atggaagaca cctgtttcac taattccaga
     5881 tcaaatccct tacgcgtacc ttcctgatca atagaggtca gaagaatttc acctgcacca
     5941 aattcttcgc cattcctagc ccaatcaaca acatccattc cggtatgttc acgtccattg
     6001 tctgtcatga cctcccatct tccattcaca gtgcgttttg cttcgataga taaaacaaca
     6061 cattgagacc caaatcttct ggcaacatca gatattagag tagggttttt agttgccgct
     6121 gtattaatag ctaccttatc ggcaccgcaa cgcaataatt gcttggcatc atcaacactg
     6181 cgaattccgc cacctacagt aattgggata aatacatttt cagcagtagt ctttacaatc
     6241 tctgacaaat tattacgccc atataaagat gcaactgtat ccatataaat caattcatct
     6301 gcaccttgtg cataatatgc catagcatat tcattgggat ttcctactac tcttaatccc
     6361 tccagatgca ctcctttgat taggttaggt cctttaatat ctagtcgtgc aattagacgg
     6421 acattactca tcaaacagtc tccaaatcca gatattcagc tttagttttt tcaagatttg
     6481 ttacttgatg tctaagtttc cactgttctc cctctttttt ccacaagtga ggagatctga
     6541 aggtatccgc caaagccata aaataggctc tgtccataat cggttgctcg aacatttgcg
     6601 aagcaatggg aaactctttg gggttaatac tcaagtattt aaaaatttct tcagcaaaac
     6661 gctctggaaa ctcttgatca aaacgcttca ccagagcaac accttcttcg cgagtaatat
     6721 cccccgaacg tatttcctgg gaggcatcgt atgttgctct tccaataccg aatttggtta
     6781 gcgtggtgta gtaatggaaa tcatcaattt tgtcatcaat actattgtat ttactgtagg
     6841 ttcctggagt tcgttcagga gaagcttcaa aaccgccatg ttccacagaa taataataac
     6901 aactttgagg atgccacttc agataataac ccaagtaatg aacctctacc tgctgctctt
     6961 cgatttgctg tggatcagca ggtaggtaag catccaaatc attgtcattt aaaccgaaat
     7021 cgctttttaa ctcttgaaca gatgtaccac ctaaaaagat tttgctttta tcgtccgcgg
     7081 taaagtattt ccagtctctt ttcgcagatt ccgtatcacc tattggatta ccatattccg
     7141 cttcattttc tccataaaca accaatttaa ttttatgcaa caaagccatt ttaggagcat
     7201 aagctttttg gccaatcata aagggttgaa atggatggaa tagattctca actgcaagtc
     7261 gtgtcaatag cctgtgaact ctgccatttg gagtaaacag atgattatca aatccggcat
     7321 gtatccaaga ttgaaaattc ctccaacccc atggcgtata catatgggga gcccaagtca
     7381 cggtcaaggg attcattccg tatttatatt ttaaaatgtg ggcagcataa aaactatcct
     7441 ttcctccgga accaggaaca acgcaatcat aagaaccatc cttgcttcta aatcgatcac
     7501 aaagctctct caattgcctg tctcgctctt cccaattaat agtagatttt ttgcgttcgg
     7561 caactcgaca ggcatcacaa atgccttcgt catcaaaatg gatggtatgt ttttttgatt
     7621 ctttcttgtg ctcatactct acagcagaat taggcctttg atttgaaata acacagcttt
     7681 tgcaaaattc caccttatgt ggtagaccat actttgtttg tagcttttca tctgggagct
     7741 gaaaacttga taaatcaatg gactttggtg cgtaaatttt gctcatatca attcctatcc
     7801 tggcattaga catttttaaa aaaccgcagt atacaataaa aatttcaggt attaaacaaa
     7861 tcctgattga agaaccaaaa tatataattt aataaatttg tgttttcaat agtcgccaat
     7921 tacccccttt tagggatata ctggatgaat cgagttaaag taggaatttt gcatgtcctt
     7981 gaaggccatg tataaccaaa tcgcagaaaa ttacgcgaca gctaatcgtt ttggttcaat
     8041 tagtgaaagc catcacgttg ccattgagca gatgaggaaa tttcatttgg ggttgaaacc
     8101 ccattataaa atcctcgatc tgggcgttgg caatggctct tttttgcaaa aattgcatca
     8161 cttaatgcca atggccaatt tcacaggaat tgatgtttca tcagaaatgt tgaaacgagc
     8221 gagcgaagcc cttcctttaa caaccattga aggcagtgct gcagaagcca acaagttttt
     8281 gcccgcacat agccaggact tggttctggc tcattttatt aatgcatata tccctattaa
     8341 tgttctcttt gatgaagcca aatacttgac gcgtgccaac ggtcacttct ctttaatcac
     8401 aacaacctat gattcttttc ctgtagcgca acaacaactg gccaacttca ttgctcagga
     8461 tactatttta agccgagttg ttggtcacta ctataaatcc atagttaaaa atacgactgt
     8521 tgctgcaaat ctcgacgaac tcttgctggc atttaaacag catcaattta atattttgga
     8581 tcaccaacgt attgaaatac ccattaccct taataacatt gatgaattgg cactgtttgg
     8641 aatagagggc acctggtttc ttaacactct atcgatacgc atgctgccaa aatatttttt
     8701 aattcagcgt cttaaacgac ttttcagcaa aatctttact tttccctacc atgacactca
     8761 tattattgat gtagttcttg ccaggaagtg ataatctttg gcggtgggtt agaaaaaacg
     8821 gaatgaggtg tgaaattgat ttctcaagca gttaaaaatt atcttccaga actaagtctt
     8881 cgccaaaaac aaaccaataa tattattttt attacttttt ggagccagtt ttctgtctat
     8941 gccctgaata caattctggt tttattttta actcgaccct tgattgctca gggattaggc
     9001 tacagccaag ccaaagcgta cgctttcatt ggtgtaactc aagccacagg ctacctgatg
     9061 cctattttag gtgggtatat ggctgataat attattggtg tcagacgatc cattcttttg
     9121 ggtagcatca tgctggcttg tgcttattta ctggtcatgt taagtgggta caccatcagt
     9181 tctcttgggg atcaattatt tatcatagct tttgccttta tccctgcaac caactcgcta
     9241 ttaatgggaa ccgcatccag tatggtttct catatttatt ccgatgatgc cattaaagcc
     9301 aaatccgcta tgacttatta ttatatggct attaatgttg gagctctgct ggcaaccatg
     9361 atcgcgccag ttctactaga aagtcgttat ggtccacttt cagtactcac cttaaccttt
     9421 attggcaaat cgattgctgc cttgaatttt gcgaaacgtt actccatata tgatagtgtc
     9481 atctggggta tggataaatc caaattttct aaccaaggcc tattgcgcct tgttgcttat
     9541 atagcggcta tctattctct tactttatat gcttatactc atgtttatat cgccagcaca
     9601 ctgataggcg caggatgtgc tataggaatt ctctggtttt taattaaaac cattatgctt
     9661 aaaggcgaaa ctcgcagtaa acaaatgatc gctgtattac tgataataga agctatagta
     9721 ttttttatca tatacaatca aatgaacagt accttggtat tatttgcaga aaacaattct
     9781 gatctaagtt ttctttggtt taaaatttca cccgctcaat accaaatgct aaatcctttg
     9841 ctcattttac tgattggaag tcaacttcct cgtttctaca gatttttttc gcgctttacg
     9901 atcccctatc aatttgccgc aggcacaatt ctctctggta tcgccctgct ggttatggct
     9961 tttgcagccc aaaatgcaat caatggatta gtgaatggta actacattgc tttgacctac
    10021 attttaattt caattgccga attatgggtt agtgccattg gtcttagcat gattggactg
    10081 tattgtgatg cacgtgcgat tgcctttgcg atgggcgtat ggtacctggc cagttccatg
    10141 tccaatgcca tttcaggacg aattgcaggt tgggtcgcca taccagagaa tattaattct
    10201 gctcttgaaa gtttacccta ttataaaaat tattatttga ttatgggcat tagtgctttg
    10261 gggcttggta ttctgatgta ttttgtagct tattatttac acaagattat gaaacgacga
    10321 ggtattgagt tagcataacg taactgaaca ttgtaatatt cgaatatgct tcgagacggt
    10381 gcttcgcacc tcctcagcat gaacggccag atgggaaaat ccaattttgt aatcagcctt
    10441 ggagttttat gcaaaccatc ttccgattat ccataggttt ttcttgttaa ttggataaat
    10501 ccgttattat attaaaccgt tcatgctgag gaagtgcgaa gcaccatctt gaagcaaaaa
    10561 cggcccgatg ggaaaatcca attttgtaat cagccttcgg attttaagca taccattttc
    10621 caattatcca tagatcttaa ttggataaat tagttattat cttaatccgt tcatgctgag
    10681 ggggtgcaaa gcaccgtctc gaagcatgct taaaaacata gtataaggga ttgactaaat
    10741 gttttgggtt tatattcttc aatgcagtga caagagttat tatacagggc aaacggataa
    10801 tctggaaaaa cgccttactc aacatcaaga taaaatgatt ccgggttgtt atacaagcac
    10861 aagattacca attcaattaa aattcagcca ggaatttatg tctcgtgaag aagccttgag
    10921 cgctgagaga caaatcaaag gatggagtcg gagaaagaaa gaggctttaa taaatggaga
    10981 ctggcaagcg ttatcagact attcaaaacg taaaaattaa gagtgggctg tgtttcattc
    11041 gaacatgctt cgagacggtg cttcgcacct cctcagcatg aacggtttaa tagtttaata
    11101 aaaaatctaa tttctttaat taataataaa attatttata gccaattcga aaaacacaag
    11161 ctgttcacta acttcaaaca tcaagcccta aattatcccg tttgaacact cggtcagccc
    11221 tatagcttga tcgaactaat gggcctgaag ccacttcaaa aaagcctttt tttagaccaa
    11281 tttgccttag ttcagaaaaa gtttcaggag ttacgtaacg tgctataggt aaatgatttt
    11341 tagttggttg caaatattgt cccaaagtca aaatatccac gtgatgagtt cggagatcat
    11401 ccatagtctg tataatttcc tcatcggttt cacctaatcc caacatcaaa ctggttttgg
    11461 tcagaacatc aggtcgatat ttcttggcaa aagccagtac attcaaggtt tgctgataac
    11521 ccgctcgatt atctcttacc gggtgtgtca ggcgctcaac cgtttctacg ttttgcgcaa
    11581 acacatcaac gccactatct agcaatacag caacatctct ttcacttcct tgaaaatcag
    11641 gagttagcgc ttcgactttg gttcggggag atcgtttttt gattgctcta atggttttgg
    11701 cataatgatt cgccccccca tcaggtaaat catcacggtt aactgaagtt aaaaccacat
    11761 aatccagatt cattaaggcc acagtttctg cggtattctc aggttcttct gcatcaagcc
    11821 aaccatgcgg atttcctgta tccacagaac aaaatcggca agcccgggta catacggctc
    11881 ccatcaacat aatagttgca gttccatgag accaacattc cgagatattt ggacatttcg
    11941 cttcttcaca aactgttgcc aagcgatgtt tttgcacttg ttctttaact tggctatagg
    12001 ctggggttgt atgattgact atacggagcc acttcggttt tggcaatcgc tcatgatctt
    12061 gacctgatga ttttattcca tctttaatag ctgtcacacc ttgagatgtc ttatattttt
    12121 gtccactttc cacaacgatt ggaatatcga tcaatttgcc catgacgcca tccgaaatac
    12181 aaagagttat gatgatccca aatcataaag ataagatcaa gttcatttaa aaatcgttat
    12241 cagaggaaaa tca
//
LOCUS       DACVWI010000089        12204 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.089, whole genome shotgun sequence.
ACCESSION   DACVWI010000089 DACVWI010000000
VERSION     DACVWI010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 12204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12204
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.089"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(45..117)
                     /locus_tag="JBH85_08895"
     tRNA            complement(45..117)
                     /locus_tag="JBH85_08895"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(82..84),aa:Lys,seq:ctt)
     gene            285..1052
                     /locus_tag="JBH85_08900"
     CDS             285..1052
                     /locus_tag="JBH85_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HAU0946318.1"
                     /translation="MTKMLKLFDAHFHIIDYRFPLITNQSYLPPEFTVEDYLQRAKPL
                     NICGGAVVSGSFQAFDQSYLLAALSILGSDFVGVTQLPATVSDEEIIQLNQKGIRAVR
                     FNVKRGGSENIHRLKYFAHRIYEMVRWHVEIYVDSKDLGDLTSLLLELPAVSIDHLGL
                     SHSGFSQLLHLVEHGIKIKASGFGRVDFDVKKALQTIAQINPDALLFGTDLPSTRAPR
                     PFLDSDIQIIQDLFDEKLTEKILYRNARNFYSKNSSE"
     gene            complement(1056..2882)
                     /locus_tag="JBH85_08905"
     CDS             complement(1056..2882)
                     /locus_tag="JBH85_08905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HAU0946319.1"
                     /translation="MFVRICAMFGFVSDLLTAAVSSLDELLQDTPAHQIILGTAALYF
                     LYNQYHNPSISRWYRSRNNASMKQRIIDSAYALAKNLPGVNQIIEKELNKELSSTREK
                     LRIQRSGMTLREEIPEEGLSPQDILSAFDVDVEKCHFDFLSVTNDSPEREFLVERGDG
                     KDSGALYAIHPKELTELLKEVYGATALTNPLHDKWPRINAMQAEVIRWCQNLFHGSKE
                     CYGLLTHGGTTSIIEAMAAYVIRARAKGIDYPEIVVPETAHAAFKKAAELTGAILITV
                     PVDKKTGAVNPKVMSSYITRNTAVIVGSAPSFMNGIHDPVSELGQLAKKKNVPFHVDA
                     CLGGFLTAFLDTSSEPMDFRVPGVTSISADLHKYGCCPKGTSVCLFSEDSPALSVYAA
                     LNWSGGLYATPGILDGSTSGARVAEVYATLSYYGKNKYQEIAKSIITLRNAIQKELTT
                     LLEEGNGLTSEDIYVYGNPQWSILGFRSNTCNAHFIADELEKRGWKLNLLQNPDGFHL
                     CLTHVHTLVKGFETQFIKDLREAVIDVKNYPPGKKPSGNVKVYGAVGMMPIELQREIC
                     KQYQKARLNYTSASPGSLRIFTNVPVEEDEGLRNRKTEKYKV"
     gene            3099..4205
                     /locus_tag="JBH85_08910"
     CDS             3099..4205
                     /locus_tag="JBH85_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0946320.1"
                     /translation="MKKKLALVMRLLAVILIPVLMSCNSESNKPVVHTLAEVDVALPV
                     KKNIVEWDEYTGRFQAVEEVDVRARVTGYLEAIKFQDGQMVKKGDVLFVIDQRPFKYA
                     LARAEAQYALAKAQYERAIKLQKEKFISAEVIDQRFQDVQVAETRVQEAKLNLEFTEV
                     KSPISGKISRDFVSAGNLIRMNDTVLTKVVSVDPIYFYFETSQNDLLKYIRLDRAGKR
                     LSSEKKPTPVLIKLPDEKDYLHQGTVDFLDNVIDSGTGTILARALVPNPDNVIYPGLF
                     ARVKLVGSGEYEAILLPDKAINTDQARKFVYVVDNENKVKRVYVELGPLRESGFYIIR
                     SGLKGDEKVIIHGIQRIHGPNQEVKPVVIEVTEN"
     gene            4306..7461
                     /locus_tag="JBH85_08915"
     CDS             4306..7461
                     /locus_tag="JBH85_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HAU0946321.1"
                     /translation="MKIALFFIDRPVFATVISIIIVMVGVLSYFNLPVEQYPQVVPPT
                     IQVYASYPGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDL
                     DQAQVLVQNRVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNMYSPNGQYDQTYIGNYA
                     ILHIRDKIRRIEGVGNVLVFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVA
                     SGKLNLQPQKKQYGFEYHIETKGRLVKKEEFENIIVKSGESGRIVRLKDIGRVELGTQ
                     NYLTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYDMAYNPTL
                     FVQQSIDAVFHTIYEAIALVVLVILIFLQTWRASAIPVVAIPVSLIGTFAVMQAIGFS
                     LNYLTLFGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLV
                     LIAVFLPTVFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLLLRAHHGTIKQ
                     EGLAWWKKPIYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMIIAYGIFISITLLLFV
                     YVPRGFIPRQDQGYFIVAVQLPPGASLSRTDAVINKAVNKILAIPGIAHTVSFTGFSG
                     ATFTNSSNAGAIFTPLLSFQERQRMGINYNDILKRLRQELSTIKEALIVVIPPPPVRG
                     IGNAGGFKMMLQDRGGRGLDVLMEAAATMVNAANQEKATTSVFTFFENSTPRLHLKLD
                     REKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADSEYRHTEDDILRIK
                     VKSNSGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSSDEALVTMEKLA
                     QNNLPDGIGYEWTEIAYQQKMVGNTALMAFTLGVIFIFLVLAAQYESWSLPLAVILIV
                     PMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFARQLENRGYNLWKAA
                     IQAAKLRLRPILMTSFAFILGVFPLIISTGAGAEMRRALGVAVFSGMLGVTFFGLVFT
                     PLFYVLISRLSRYKRKLKDLN"
     gene            7577..11938
                     /locus_tag="JBH85_08920"
     CDS             7577..11938
                     /locus_tag="JBH85_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HAU0946322.1"
                     /translation="MAFINRSSLTAWSTMIKSKTFSCYIIGEANITLQCADILLAGGH
                     KLLGIISPSNTIKKWCTANSIAYLENIKEFEKNHMDEEFDFLFSIVNSEIIPQKILRL
                     PRYYAINYHNSPLPKYAGLYATSWAILNGETQHGISWHIMNEVIDAGDILKQPTFPIN
                     DLDTAFSLNLKCYEQGIYSFHELVEELSSHTTTSVKQNLSCRSYYGLKNKPANFGFIS
                     WEESSESIDRLCRALTFGNYTNQLEVPKIMINKEIYVVKSYEKLNISSGVKPGTVVNN
                     SNGGLQVATGTTDILILELTDLEGRTCSMEELGSLFKMTRYSQLDTIEPAFFEKLTIC
                     PAKKPKIEKFWVNEFLKCAQEKNSFLSPLSQLDKTSCSLHDRKTVTQVPGELLAKLKK
                     LCPEHWQIKNILLTSLLIYLYRLNNYSNLSIAFINSQLSSNDPDLNKLLSDYVPLTTQ
                     FDSTMTFMDALTFVSKEQGKLYENSTYTRDIFIRYPELHNAFNHIDVSITYITDSKAV
                     APCVGDKKLNFCIAEDCSWFYVNNKTNYRAHLESYAFFENMNEHLLTLLEDIVSNPDK
                     KIFELSIISKKEKNDLLVVWNNTQCDYDYEKPIHQYFEEQVSKTPDEIAAVFENKSIT
                     YVELNRKANQLAHYLRSQGVKQDDLVGISLSRSLEMVICILGILKSGGAYLPLDPNYP
                     DERISYMLMDSKTNLLITDQEFIKRKPHGFNGKSIEINSFLNLKNLSSENLQAINKPS
                     DLAYIIYTSGTTGKPKGVAISHRSICNHMLWMKKEYAFKNKDVFLQKTPFSFDASVWE
                     FFMPLLVGGKLVVAPNDAHTSPNQMIRLIRENKVSVLQIVPSMLKELVSNEEFGLCKS
                     LTHVFCGGEALLSETINAFFKYNFSDTKLHNLYGPTEVTIDTTAYTCTAGDAKGDVSR
                     IGKPIMNTKVYVLDAKMQPVPIGIMGELYISGDGLARGYLNNPEFTIQKFLPNPFSNN
                     KNDRLYRTGDLVKWNSNGVLEYHGRCDNQVKIRGYRIEINEIESYLEKIPSIHQCIVK
                     PEKNQDDSMSLSAYLVLEKNSQISAVDIRAILKQNIPEYMIPARFYIVDKFFSTPSGK
                     IDRKMLPIPSKRLRSGTNYAPPNNPKEQLLHNIWCSVLKIDNLGIYDDFFELGGNSLS
                     AMNIISHIREQFSLTLSVRTLFDFPTISSLSKAIENIYHKKTDCIYNQSSGNHIIPLR
                     TEGEKTPLFLVHPIGGSVFWYKLLGQYFDKDRPLYGIQDPGLDRNELIFSNLEEMASA
                     YVHSIQAIQPSGPYILGGASFGCTVAIEMAKQLEEKGETVISIISLDGWAFYPSLQNN
                     ELYFQEVMKEQNSRILKKYIENNVSNSKFLLELQWHRENMLTQYKMPIIKPKFILFKA
                     KKLTEMFQYNASLNWWENYTSQPIELHLTPGDHESMFYEPNIKILATKLNDSLNEQDI
                     KHYQFNDTLKDSFIDQL"
BASE COUNT         3867 a         2355 c         2290 g         3692 t
ORIGIN      
        1 aagacccatt ttaatttgtg aggattgggc gattaattat tgattgggcc gtataggatt
       61 cgaacctatg accctgagat taagagtctc ctgctctacc aactgagcta acggcccata
      121 ttataaaaac cacttacaat ttaatagcaa caagtattct atctgtcaac tgacaaataa
      181 attagagaat ggccttatat catttatagt catcaagcaa aaaaccaatc gctaataacg
      241 aatgaaatct ttgtatgata gtatgatttt aaccgcaaat ttaattgact aaaatgctga
      301 aactatttga tgctcatttt catattatcg attatcgttt tcctctaata actaatcaat
      361 cctatcttcc tcccgaattt actgtcgaag attacctcca acgggcaaag cccctgaata
      421 tttgcggagg agctgttgtt tcaggctcat tccaagcctt tgaccaaagt tatcttctag
      481 ctgctctgtc tattttaggc tccgattttg taggagttac tcaattacct gccactgtaa
      541 gtgatgaaga aattattcaa ttaaatcaaa aaggtattcg tgcagtccgc ttcaatgtca
      601 agcgtggcgg ctcagaaaac atccatcggt taaagtattt tgctcatcgt atttatgaaa
      661 tggtcaggtg gcatgtagag atttatgttg actcaaagga tcttggcgat ttgactagtc
      721 tgttattgga attaccggct gtcagtattg atcatttagg attatcgcat tcaggttttt
      781 ctcaattact ccatctggtg gaacatggca tcaaaataaa agcttcaggt tttgggagag
      841 tcgattttga tgttaaaaaa gcactgcaaa ccattgccca aattaatcca gacgctttgt
      901 tatttggtac agatttaccc tccacgcgtg ccccccgccc ttttctggat agtgacattc
      961 aaataatcca ggatctattt gatgagaagc tgacagaaaa aattctgtac aggaacgcgc
     1021 gtaattttta cagtaaaaat agttcagagt aaggtttaca ctttatattt ctctgttttt
     1081 ctatttctaa gtccttcatc ttcttctaca ggcacatttg taaatatcct caaactccct
     1141 ggactggcag aagtataatt aagacgggct ttttgatatt gtttacaaat ttctcgctga
     1201 agctcaatcg gcatcatacc aacagcacca tacactttga cattaccgct tggtttcttt
     1261 ccaggaggat aatttttaac atcaatcacc gcctctctta aatcttttat aaattgcgtt
     1321 tcgaaacctt tgactaatgt gtgcacatga gtcaaacata agtgaaatcc gtccggattt
     1381 tgtagcaaat taagcttcca acctcgcttc tccaattcat ctgcaatgaa atgagcattg
     1441 caagtgttac ttctaaaacc caggatggac cattgaggat taccataaac ataaatatcc
     1501 tcactggtta atccattgcc ttcctccagt aatgtcgtta attctttttg aatcgcattg
     1561 cgtaatgtga taatgctttt agcgatttcc tgatatttat tttttccata gtaagacaaa
     1621 gtggcataga cctctgcaac ccgagcccca ctggttgaac catcgagaat tcctggtgta
     1681 gcatacaatc cacctgacca gtttaatgcg gcataaaccg acaaagcagg cgaatcctca
     1741 ctaaaaagac aaacagaggt gcctttagga caacagccat atttatgcaa atcggctgaa
     1801 atggaagtca ctccaggtac tctaaaatcc ataggttctg atgaagtatc taaaaaagcc
     1861 gttaaaaatc cacccaaaca ggcatccaca tgaaaaggaa catttttttt ctttgctaat
     1921 tgacctaact cagagacagg atcatgaatt ccattcatga aagatggggc agatccaacg
     1981 attacagcag tatttctggt aatataggaa ctcatgacct tgggattcac cgcacccgtt
     2041 tttttatcaa caggaaccgt aattaatatt gctccagtta attcggctgc ttttttaaat
     2101 gcagcatgtg ctgtttcagg aacgacaatt tcaggataat caatgccttt tgcccttgcg
     2161 cgaatgacat aagcagccat cgcctcaata atgctggtcg tacccccatg agttaataaa
     2221 ccataacatt cttttgaacc atgaaacaaa ttttgacacc agcgaatcac ctccgcttgc
     2281 attgcgttaa ttctaggcca tttatcatgc aaaggattag tgagagcagt tgccccataa
     2341 acttctttaa gcagctctgt cagttcctta gggtgaatag cgtataatgc acctgaatct
     2401 ttaccatccc ctctttcaac aagaaactcc ctctcagggc tgtcattagt tacggataaa
     2461 aaatcaaaat gacatttttc cacatccaca tcaaatgcac tcaaaatatc ttggggagaa
     2521 agcccttcct ccggtatttc ctccctcaga gtcataccgg aacgctgaat tctcaatttt
     2581 tctctcgttg aagagagttc tttattgagc tctttctcaa tgatctgatt caccccaggt
     2641 aaattttttg ccaaggcgta agcactatca ataatacgct gcttcatact ggcgttatta
     2701 cggctacggt accacctgga aatcgatggg ttatggtatt gattataaag aaaataaaga
     2761 gcagctgtgc ctaatatgat ttgatgtgcc ggagtatctt gtaataattc atctaaagaa
     2821 ctgaccgctg ctgttaataa atctgaaaca aacccgaaca ttgcacatat ccttacgaac
     2881 aaaatgatgg ataatagtca ctttgcataa aaaaataaag gccggtcgat acgtgtcagt
     2941 ataacaaaaa cgccctggta ttttgcttga gccggatgat ctcctaatgc aagatataat
     3001 attcacggca ttacgcataa tgcgtcttta taagctaaac taagcttatc cactggatca
     3061 taacatacca gtgacttgaa tatcagggat agataacaat gaaaaaaaaa ctggcattgg
     3121 tcatgcgatt actggctgtt attcttattc ctgtcctcat gtcctgtaat tcagaatcca
     3181 ataagccagt ggtacatacc ttggcagaag ttgacgtcgc gctaccagta aaaaagaata
     3241 ttgtagaatg ggacgaatac acaggacgat ttcaagcagt agaagaagtg gatgttcgtg
     3301 cccgtgtcac tggatatctt gaggcgatca agttccaaga cggccaaatg gtaaaaaaag
     3361 gagacgtttt attcgttatt gatcaacgcc ccttcaaata tgctctggca agagcagaag
     3421 ctcaatacgc cttagccaaa gcgcaatatg aacgtgccat aaaacttcaa aaagagaaat
     3481 ttatttcagc tgaagtgata gatcaacgat ttcaagacgt acaagttgct gaaaccagag
     3541 tacaggaagc aaaattgaat ctcgaattta ctgaggtcaa atcccccatc agtggcaaaa
     3601 ttagtcgaga ttttgtgagt gcgggtaatt taatccgcat gaacgacaca gtcttgacta
     3661 aagtagtttc tgttgatccc atttattttt attttgaaac cagtcaaaat gatttgctca
     3721 aatacatacg cctcgatcgc gctggaaaaa gactcagctc cgagaaaaaa ccaactccag
     3781 tcttaattaa gttacctgat gaaaaggatt acttgcatca aggaacagtg gattttttag
     3841 ataatgtgat tgactcaggc acaggaacta tccttgccag agcacttgtc cctaatcctg
     3901 ataacgtcat ttatcctggt ctttttgcac gtgtaaaatt agttggaagt ggggaatatg
     3961 aagcaatttt actccccgat aaagcaatca atacggatca agcccgcaaa tttgtgtatg
     4021 tggttgataa tgaaaataaa gtgaaacgag tgtatgttga gttagggcca ctgcgcgaaa
     4081 gcgggtttta cattatccga agtggattga aaggggatga aaaagttatc attcatggaa
     4141 tccaacgtat tcatggccca aaccaggaag ttaagcctgt ggtaattgag gtgactgaaa
     4201 attaaaccgg ttttgtattg gaattatggt catttgatat aattttaata ctgcacaaag
     4261 catacaacgt tttatggtgg agccctcacg aaaaggattt tctggatgaa aatagctctt
     4321 ttctttattg atagaccagt atttgcaaca gtgatctcca tcatcattgt tatggtgggg
     4381 gtattgtcct atttcaactt accagtagaa caatacccac aagtagttcc tcctacgatt
     4441 caggtatacg cctcttatcc tggagccaat gcaaaaacag tagctgaaac tgttgcaaca
     4501 ccgattgaac aggaagttaa tggtgtggaa aacatgttgt atatggattc ccaatccact
     4561 gatgatggac aaatgcgtct gactattact tttaagcttg gaacagatct ggatcaggcg
     4621 caggtgctgg tgcaaaacag ggtggcagtt gtggaaccca aattacctga agaagtccgc
     4681 cgcttaggaa tcactactaa caaaaattca cctgatttga tgttggtagt gaatatgtac
     4741 tcccctaatg gtcaatatga tcaaacctac atcggaaatt acgctatctt gcatatacgc
     4801 gataaaatca gacgaattga aggtgtaggc aatgtactcg tatttggggc cagtgaatat
     4861 gccatgcgtc tttggctgaa tcccgattta atgaatactt ttaatttaac ggcaaatgat
     4921 gttttagcag ctgttcgtgc tcaaaacgtg caagtcgcca gcggcaagct taatttgcag
     4981 ccacagaaaa aacaatacgg tttcgagtac catattgaaa ccaaaggacg cctggttaaa
     5041 aaagaagaat ttgagaatat tattgtcaaa tcaggtgaaa gcgggcgtat cgttcgcctg
     5101 aaagacattg gtcgcgtcga gttaggtacg caaaattacc tgacgaaagg ttatttagat
     5161 aaataccctg ctgttgcatt acctatttat caacgcccag gaaccaatgc attagccact
     5221 gcacaagaaa tcattaaaac catgaaaaca attgccaagg atttcccgcc gggcattacc
     5281 tatgacatgg cctataatcc tactctattt gttcaacagt cgatcgatgc ggtatttcat
     5341 accatttatg aagcgattgc tctggttgta ctcgtcattt tgatttttct acaaacatgg
     5401 agagcctctg ccattccagt agtagctatt cctgtatcat tgataggaac ttttgccgtg
     5461 atgcaggcta ttggattttc gttgaattac ttgaccttgt ttggacttgt tcttgctatt
     5521 ggtattgtgg ttgatgatgc cattgtcgtt gtcgaaaata tggagcgtaa tatccaggca
     5581 ggcatgaatc cccgcgatgc cgccagaaaa accatgacag aggtaggatc agcattggtt
     5641 gctatgggtt tggtgttgat tgccgtcttt ttacctaccg tttttctgga aggaatttcc
     5701 gggcgttttt atcaacaatt cggtacaacg cttgctgtcg caactgccat ttctgttttt
     5761 gtctcgttaa ccctgactcc aaccatggcg gtattattgc ttcgtgctca tcacggaact
     5821 ataaaacaag aagggttagc ctggtggaaa aaaccaatat atggattttt gcatggattt
     5881 aaccgactaa tggaaggatt ttcccggcaa tatgggaaat tggttgctac cctcacacgt
     5941 aaaacggctt taatgattat tgcttatggt atttttattt ccatcacact acttctattt
     6001 gtctacgtac cacgcggctt tatcccgaga caagaccaag gttattttat cgttgcagtt
     6061 caattgccgc ctggagcctc tttgagccgt accgatgctg tcatcaacaa agcagtcaac
     6121 aaaatattgg cgattcctgg tattgcccat accgttagtt ttaccggctt ttctggcgct
     6181 acatttacta attcatcgaa tgccggagca atttttaccc ccctattgtc atttcaagaa
     6241 aggcaacgta tggggataaa ttataacgat attcttaagc gtctaaggca ggaattaagt
     6301 accatcaagg aagccctcat cgtggttatc cctcctcccc cagttcgagg tattggaaat
     6361 gcaggtggtt ttaaaatgat gcttcaagac aggggtggtc gaggtcttga tgtattaatg
     6421 gaagcggcag caacaatggt taatgcagcg aatcaggaaa aagccaccac atcagtattt
     6481 actttttttg aaaattcaac accacgactt cacttgaaac ttgacagaga aaaggtggaa
     6541 cggcttaacg tgccttacgc caatgtcgtg gaagcactgg aagtttacct tggctctgtt
     6601 tttattaacg aattcaatta cctgggacgt acttttcgtg ttattgcgca agctgattca
     6661 gaatatcggc atactgaaga tgatatttta cgaatcaaag tcaaaagcaa cagtggagac
     6721 atggttccta taggatcagt tgcgcaaata gaaaatacgg ttgctccctc gcgtatgcct
     6781 cgtttcaatc tgtatcccgc tattgatttg cagggtgatg ttgctcccgg atacagttct
     6841 gatgaagcac tggtgactat ggaaaaactg gctcagaaca atcttccaga cgggattggt
     6901 tatgagtgga cagaaatagc ctatcaacag aaaatggtag gtaatactgc tttgatggct
     6961 tttactctgg gtgttatttt cattttcctt gtccttgccg ctcaatatga aagctggtct
     7021 ttacctttag ccgtcatatt aattgtaccg atgtgtctct tttcttccat gctgggagtt
     7081 aaaattctcg ggatggaaaa taatattatg actcaaattg gttttctggt tttgattgga
     7141 cttgcatcga aaaatgccat cctcattgtg gaatttgcga gacaacttga aaatcggggc
     7201 tataacctct ggaaagccgc cattcaggca gcaaaacttc gtctgcgccc gattttgatg
     7261 acctcatttg catttattct cggtgttttt cccttgatta tctcaacagg cgcaggcgct
     7321 gaaatgcgcc gagcgctcgg tgtcgctgta ttcagcggga tgttgggagt gacttttttt
     7381 ggtctggtct ttacgccttt attttatgtt ttaattagtc gcttgagtag atataaaagg
     7441 aaattaaaag accttaacta aatatttgct gtgaaaccct taatatattt atgcactcgg
     7501 ttcctctctt ctttgcatga tgtcgtgagt gaaattttaa tcaaccttga ctaaaaaaga
     7561 tcatttcaat taaaatgtgg cttttattaa tcgatccagt ctgacagcat ggagcactat
     7621 gattaaaagc aagacattta gttgctatat tatcggtgaa gctaatataa ctcttcaatg
     7681 tgcagatatc ctattagcag gaggccataa attacttggc ataatctctc catcaaacac
     7741 cataaaaaaa tggtgtactg ccaattccat tgcttatctt gagaacatca aggaatttga
     7801 aaaaaatcat atggacgaag aatttgattt cttgtttagc atagtcaaca gtgaaatcat
     7861 tcctcaaaaa attttaagac tccctcgtta ttacgccata aactatcata actccccatt
     7921 acccaaatat gcaggattat atgccacttc gtgggcgatc cttaatggcg aaactcagca
     7981 tggtattagt tggcacatta tgaatgaagt gatagatgca ggtgatattc taaagcaacc
     8041 aacttttcca ataaatgatc tggatacggc gtttagttta aatctgaaat gttatgaaca
     8101 agggatctat tcctttcatg aacttgttga agagctttca tcccacacta cgacttcggt
     8161 taaacaaaat ctgtcatgcc gttcttatta tggtctaaaa aacaagccgg caaattttgg
     8221 atttatttca tgggaagaat cttcagaaag cattgatcgg ctctgcaggg ctttaacatt
     8281 tggaaattat accaatcagt tagaagtacc caagattatg attaataagg aaatttatgt
     8341 tgtaaaatct tatgaaaaat taaatatatc ctcaggagta aaaccaggca ccgttgtgaa
     8401 taactcgaat ggtggcttac aagtagctac cggaacaaca gatatattga ttctagagct
     8461 tactgatctt gagggcagaa catgctcaat ggaagaatta ggcagcttat ttaaaatgac
     8521 tcgctactca caacttgaca caattgaacc tgcgtttttt gaaaagctaa caatttgtcc
     8581 tgctaaaaaa ccaaaaatag agaagttctg ggtcaatgag tttttgaaat gtgctcaaga
     8641 aaagaattca tttttatctc cactatccca actcgataaa acatcatgtt cacttcacga
     8701 tagaaaaaca gtaacacaag tacctggtga gttactcgca aaattgaaaa aactatgccc
     8761 tgagcattgg caaataaaga atatcttatt aactagcctc ttaatttacc tatatcgatt
     8821 aaataattac agtaatctct cgattgcatt cattaattca caattgagca gtaatgatcc
     8881 tgatttaaat aagcttttat cagactatgt gcctttaaca acgcaatttg atagcactat
     8941 gacatttatg gacgcattga catttgtctc aaaagaacag ggaaagttat atgaaaacag
     9001 cacttacact agagatattt tcatacgcta ccctgagcta cataatgctt tcaaccatat
     9061 tgatgtcagt atcacctata ttactgactc aaaagcagtg gcaccttgtg tcggcgataa
     9121 aaagttaaac ttctgtattg cagaggattg ttcctggttt tatgttaata ataaaacaaa
     9181 ttatagagcc catttggaat cttatgcttt ttttgaaaat atgaatgagc atttgctgac
     9241 tttattggaa gatatagtca gtaaccctga taaaaagata ttcgaacttt caataatcag
     9301 taaaaaggaa aaaaacgatt tattggtagt ctggaataac actcagtgtg attacgatta
     9361 tgaaaaaccg attcatcaat attttgaaga gcaagtttcc aaaacacctg acgaaatagc
     9421 tgctgtcttt gagaacaaat caataactta tgtagaactt aaccgaaaag ccaatcaatt
     9481 agcacactat ttaagatctc aaggtgtaaa acaagatgac ctggtaggga tttctttaag
     9541 tcgcagtttg gaaatggtta tatgcatttt aggcatttta aagtctggag gagcttacct
     9601 gccattagat cctaattatc ctgatgagcg gatttcatac atgctaatgg acagtaaaac
     9661 taacctgctg ataacagatc aagaattcat aaagagaaaa ccacatggat tcaatggcaa
     9721 aagtattgag ataaattcct ttttaaattt aaaaaacctg tcttctgaaa atcttcaagc
     9781 aattaacaaa ccatccgatt tagcctacat tatttatact tccgggacta caggaaaacc
     9841 taaaggtgta gccatatcgc atcgttctat ttgcaatcac atgttgtgga tgaagaagga
     9901 atacgctttt aaaaacaagg atgtattttt acagaaaacc cccttctcgt ttgatgcctc
     9961 tgtttgggag ttttttatgc cacttctggt tggtggtaaa ctggtcgttg ccccaaatga
    10021 tgcacatacc agtcccaatc aaatgatacg cctaatcaga gagaacaaag ttagcgtatt
    10081 gcagatcgtt ccttctatgc taaaagaatt agtatctaac gaagagtttg gtctctgcaa
    10141 atcactcacg catgtatttt gtggtggtga agccctttta tcagaaacaa ttaatgcttt
    10201 ttttaagtac aacttctcag atacaaaact acataatctc tatggaccaa cggaagtaac
    10261 cattgataca actgcttata catgtaccgc aggagatgca aaaggcgatg taagccgaat
    10321 aggcaaaccg ataatgaaca caaaagtgta tgtattagat gcaaaaatgc agcctgttcc
    10381 tattggaata atgggggagc tttatatttc aggagatggt ttagcacgtg gttatttaaa
    10441 caaccctgaa tttaccatac agaaattttt acccaaccca ttcagcaaca ataaaaatga
    10501 tcgattatac agaacagggg atcttgtcaa atggaattcc aacggagtcc tggaatatca
    10561 cggccgatgt gataatcaag taaaaattag aggatatagg atagaaatca atgaaattga
    10621 atcctatttg gaaaaaattc cttccatcca tcaatgcatt gtgaaaccgg aaaaaaacca
    10681 ggacgactca atgtctttat cagcttattt ggttttggaa aaaaattctc aaatatccgc
    10741 tgtagatatt cgggctatat taaagcagaa tattcctgaa tacatgatcc cggcccgatt
    10801 ttatattgtt gacaaatttt ttagcacccc aagcggtaaa atagatagaa aaatgttacc
    10861 aatcccatcc aaacgattac gttcgggtac taattatgct ccccccaata atcctaaaga
    10921 acaattatta cacaatatct ggtgttcggt tttaaaaata gataatttgg gaatttacga
    10981 tgattttttc gaacttggcg gtaattcact atcagcaatg aacataatat cacatatacg
    11041 ggaacaattt tcactgacat tgagcgttag aacattattt gattttccca caatatcctc
    11101 tttatctaaa gcaatagaga acatatacca taagaagact gattgtatat acaatcagtc
    11161 ttctggaaat catatcatcc ctcttagaac agaaggagaa aaaacacctc tgtttttagt
    11221 acatccaatt ggtggaagtg ttttttggta caaacttctt ggacaatatt ttgataaaga
    11281 tagaccattg tatggaatac aggatcctgg gcttgataga aatgaattga tatttagtaa
    11341 cctggaagaa atggctagtg catatgtcca ttcaattcag gctattcaac caagcggacc
    11401 ttacatactt ggtggcgcat catttggatg tactgttgct attgaaatgg cgaaacaatt
    11461 agaggaaaaa ggagaaacag taatttctat tatctccctt gatggttggg cattttaccc
    11521 ttccttacaa aacaatgagc tttattttca agaagttatg aaagaacaaa attcaagaat
    11581 tctaaagaaa tatattgaaa ataacgtcag taactccaaa tttttattag aattacaatg
    11641 gcatagagaa aacatgttga ctcaatataa aatgccaatt attaaaccca aatttatttt
    11701 atttaaggca aaaaaactta cagaaatgtt tcaatataat gctagtttga attggtggga
    11761 aaattataca agtcaaccaa ttgaactaca tttaactcct ggtgatcatg aaagcatgtt
    11821 ttatgagcct aatatcaaaa tcctggctac caagctcaat gatagcttaa atgagcagga
    11881 tattaagcat taccaattca atgatacact gaaggattca tttatagatc aactctaaac
    11941 cagtatcatc agaactgcac agaggttttg gttgatttgt ttcttctctc tccgtgacct
    12001 attatttaaa tggaataaat aaaatccata tgaatgaaat tgaattaggt cactctctat
    12061 gcctaaaaaa gcggatctga cattgctcct catcaatacc cttgaagaac caatatttta
    12121 tctttcctca gattttatta ttttagatct caacgcttcc gccaagaaaa tattcaaaat
    12181 tacaaagaat tcaattattg gaaa
//
LOCUS       DACVWI010000090        12101 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.090, whole genome shotgun sequence.
ACCESSION   DACVWI010000090 DACVWI010000000
VERSION     DACVWI010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 12101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12101
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.090"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            104..1870
                     /locus_tag="JBH85_08925"
     CDS             104..1870
                     /locus_tag="JBH85_08925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HAU0946323.1"
                     /translation="MTSLQIISHFFPFFWPKNNFKKKFRVIFSLFLVFTTLALNLIVP
                     IFFKDIVTALSGTIRTSSMMIISLICCYGLLWMLARCSEKIREMLSFVNISTTIADYS
                     THVFAHLHALNYKFHLDKETGKITSAISRAQLAIAMLISNILFRIVPVFLEILFAFLI
                     IWHFYGLSYGLYLIIILGIYLVFNGLTQKKSTVLQKNCSIAELNVSSAITDSLLNTET
                     VKYYNSQTVEHKKIDQFLQESVHANTALFSGNGTFLVIQTLIIAGGLAFLSYKVGYQI
                     LIGQLKIGDFVLINGYLLQLFEPLSEASVRWRDTKNDLSKIEYSAYLLDQTDEVEQDH
                     PDAKPLFITGPHVHFKNVTFGYQPEHPILKNVSFEVPPAKMTAIVGPSGSGKSTIARL
                     LLGLFEVTQGQILIDDQDITAVSKHSLRQQIGIVPQEVLLFNNTLRFNLCYGALNISE
                     REINNVIQLAHLEEMVKNLPKGIETNIGEGGFKLSGGERQRIGIARCLLRNPSILLFD
                     EATASLDTQTEKNIQENIEEVTKHTTSIVIAHRLSTIIHADNILVLQDGEIVEAGTHQ
                     ELIEKKGLYYSMWNSQQQKSAS"
     gene            1867..3675
                     /locus_tag="JBH85_08930"
     CDS             1867..3675
                     /locus_tag="JBH85_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HAU0946324.1"
                     /translation="MMNESLPSIKETIYYLWPCVWTKNSLRGKIHVVLALLFILISIA
                     LNLCVPIFLKEAINALSGHALFLNSTPLVIILTYASVWGASKACITLSQVIAFPVELE
                     GARKFCLELFDHVQALSTKFHRERKSGEILTIIERSHSSAVDLIGRPIVMILPVLIEI
                     IFAMIFLSYFYDLFFGLVLLLMLVSYILLSYYTAQWIVKCRMKQNNEDASANAYLVES
                     LLHADTVKYFNTQQDEINTAAQKLQEKACADTRALNADAKIHLMQNVIVGMCVIIMLL
                     LAGSRVIAGSMNVGDFVLVHGYLFMFMLPLSMLGYRIRVTRDDLARFQTAIQLLKIPI
                     DIQDQPNARTLKYKEGKIQFDHVHFTYNEHRKILDDVSFIVEPGTTTAIVGSSGSGKS
                     TLARLIFRLYDLNSGSIQIDGQNISNIQHASLRAILGIVPQETALFNDTLRNNLIYGN
                     PHVTHDELADAIQAVHLDRFVAKLPDGLETRVGERGLKLSGGEKQRVAIARMLLKKPK
                     IFIFDEATSSLDMKTEKDIQTCLKQISINTTTLIIAHRLSTVTHADNILVLAKGVIIE
                     QGTHNELLNQNGAYAQLWKAQSQNKIDTGSINGFVP"
     gene            3757..4599
                     /locus_tag="JBH85_08935"
     CDS             3757..4599
                     /locus_tag="JBH85_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAU0946325.1"
                     /translation="MNIKQNDTSTTPPILYGTAWKEDDTKRLVLQALNSGFRGIDTAN
                     QRRHYFEEAVGDAIDQFLTTSQKTRSDLFLQTKFTSVHGQDHRKPYDEFDSLTNQVKQ
                     SFASSLEHLQTDYIDAYILHGPSLSHGIIDADLEIWQAMEELVCSRKVKFLGISNVNM
                     VQVEELYRKVSIKPSFIQNRCFAITQWDQDVRTFSQKNKIIYQGFSLLTANQRYLLNP
                     HMQSLAVKYDKTIPQIIFRFANQVGILPLTGTTNQQHMDNDLNIYDFELTQEEIQYIE
                     NIGL"
     gene            4610..5110
                     /locus_tag="JBH85_08940"
     CDS             4610..5110
                     /locus_tag="JBH85_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946326.1"
                     /translation="MTIKIETPRMLLRLIKDEDLDQVAQLHADREVRKFFPDGTQDRE
                     QTKRRIKQIMNLYGDKGLPGFVIFNKVTHEFIGRCGFGPIETGEIEVGYLIVRKFWGM
                     GYASEALEALLEWSKININSDYIIAFAPLKHSASHRVMEKCGMEYYKDELGHGVECKF
                     YRSKNK"
     gene            5133..5915
                     /locus_tag="JBH85_08945"
     CDS             5133..5915
                     /locus_tag="JBH85_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HAU0946327.1"
                     /translation="MTKITTDEAALKLAVLIDADNARAVIIDGLLTEIAGYGDAIVRR
                     IYGDFTLPSSAQWKKVLHKYAIKPVQQFAFTSGKNATDSALIIDAMDLLYTHRFGGFC
                     IVSSDSDFTSLANRIREEGLQVFGFGEKKTPEAFRNACNKFIFTEVLRPVAPPDQLIS
                     QSKKRKQPVKQAKANEPSAQEFPKEFILEALNNSYDDTGWAYIGTFGGYLTKLKPDFD
                     SRLYGFKKLSDLVKGKPEIFETEERVNPGSNTKVLYLRGRQE"
     gene            5930..6307
                     /locus_tag="JBH85_08950"
     CDS             5930..6307
                     /locus_tag="JBH85_08950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate hydrolase"
                     /protein_id="HAU0946328.1"
                     /translation="MNLLEKIAALENEATEFGFQWETTDQIMTQIQSECIEVDEHLKA
                     GINDNSSALQEEIGDLLHAVFSLCVFCKLDLKDTLQQTVEKFERRLRAVKMIAHEMKL
                     INLEGQTFDELMSIWKQAKSRVG"
     gene            6613..8064
                     /locus_tag="JBH85_08955"
     CDS             6613..8064
                     /locus_tag="JBH85_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010947782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISLpn5 family transposase"
                     /protein_id="HAU0946329.1"
                     /translation="MIKGNQNNSSSGWAESEFGIVNFGDKRLSKRLLKIADSFANSPE
                     CSINRACDDWHQSKAAYRFFQNDAVSERKILDSHITKTIERAKNYPTILAIQDTSYIS
                     YKNHKKTEGLGIIAARVRSKTTNFQTHGLVMHTTFAVTTEGLPIGLLDQKISSRPLLD
                     ETVKELKKRSHNIALPIEEKESMRWIESLEHSNNYPDLKNAKVVTVCDREADIYDLFE
                     VASTNQCPFVVRARQDRTVNKTSIYSKKSGEKLWDLVSGSPCRGEIQVTIPARDNKPK
                     RTATLEVRFDHFVMNPPKNNVKRKTRTLPDLKLNAVYVIEQSPPLGEEPMNWMLLTNI
                     DINNFEEAVEKIQWYCLRWRIEIFHKILKSGFKVEECRLGAADRLVRFLTIMSVIAWR
                     IFFITLVARESPDLPCSFLLANEEWNVLYTKIHHTKHYPETPPTIKEAVKWIAQLGGF
                     LARKNDGEPGPITLWRGWKRLVDLAEGWNLALS"
     gene            complement(8135..9655)
                     /gene="ltrA"
                     /locus_tag="JBH85_08960"
     CDS             complement(8135..9655)
                     /gene="ltrA"
                     /locus_tag="JBH85_08960"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAU0946330.1"
                     /translation="MTDNLLSGAPDAFILNTKWDQLDWPSIEKNVYRLQVRIAKAVSN
                     KQHGKVKSLQWLLVNSISAKLLAVRRVTTAKGSKTPGIDGVVWTTSEEKCEAVRNLKA
                     RGYKATPLRRIYIPKKNGKERPLSIPTLKDRAMQALYLLALEPVGETTADLNSYGFRP
                     KRSTHDAIYQCYATLARKNCAQWILEGDIKACFDEIDHGWLKSNIIIDQRVLTQWLQA
                     GYMEKNQLFETARGTPQGGPASPLLANMVLDGLEREIHSGCGQGNKINYIRFADDFIV
                     TANSPDILKEKVMPIISNFLAQRGLSLSQEKTKIVHIEEGFDFLGFNVRKYKGKFLTT
                     PSKDSIKSVQMKIKETVKKGYGWKGSELISALNPIIKGWANYHRKVVSKATFSELDNY
                     IYQETFRWTMRKFSGHNRYKAMDRYFRNRSLTRRWIFSDVVKAKDGTKKYVCINKMMD
                     IKIQRHVKIRSSANPYLPEYVKYFEDRKKWAKDCSFVQRIKDKQLNVIGSEYLLGE"
     gene            9615..10085
                     /locus_tag="JBH85_08965"
     CDS             9615..10085
                     /locus_tag="JBH85_08965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946331.1"
                     /translation="MNASGAPDNKLSVICFPHFYKFCKFFRNERPIGRGLLFRPGDIE
                     TRIQLITNWPSLFPISQAYTSIGSLCRLLSSYEEKYRVSKFRCSSNAGLGVCSRPESF
                     VIVWGSCDFPSYLSYLLVQAIQPIALVASYDLYHRFTYVHHTSYLVAIPILAIR"
     gene            10503..10877
                     /locus_tag="JBH85_08970"
     CDS             10503..10877
                     /locus_tag="JBH85_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946332.1"
                     /translation="MHQPDIQHNRKRGYIMARITVTLPDNLHKQIIKIAGKENDSLSY
                     TTTRLVEIGLMVMNSKSDNKDEQKTTNIEEYCQKLIIQINGIIKEIAVDKFNFDDDKI
                     VQITKDTLNKFNKLKGIQQESL"
     gene            complement(11075..>12101)
                     /locus_tag="JBH85_08975"
     CDS             complement(11075..>12101)
                     /locus_tag="JBH85_08975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946333.1"
                     /translation="FELKELESPLQWSISSLQTSRIKRRIYEYEDIPRFKGAEVIQTV
                     YSIEQIEKGDPKKYENFIITDFKNSKIVEWSCAPEMLDNYYKDTGKPFQTSPAFFNPE
                     VLSKYKNNHEKYEVRDRGIHCYGSWSLKSYSINDEGQVHAYIYCLGQLPHKEQLHWKQ
                     YNEEPKAGISKVAYNTDFLAEFDEEESSLRAIKQKLANFPPYSLDKEKFVLWAPKGGD
                     IDMLLKQIHPVITDIKKEYLDYLLNLTILVIDGLQEKVIRRLVNAEENKRSLECLEIL
                     LKNWGSPNADKIMKALRCLQAKRSKYAGHGGGKIDFDIKEDSLAITYEINEAIHLLSE
                     EIDKNSR"
BASE COUNT         3846 a         2301 c         2228 g         3726 t
ORIGIN      
        1 caaattattt tgcgcttgcc tcaatgtcta cggttttttt acttcctaaa ttatttaatg
       61 ttatcctcct caatcatatg ataataatca ataaggactc tatttgacga gtttacagat
      121 aatatcccat ttttttccat ttttttggcc gaaaaataat tttaaaaaaa agtttcgggt
      181 catattttca ttatttttgg ttttcacaac actcgcctta aatttaattg tacccatttt
      241 ttttaaagat atagtaactg cattatccgg tacgataagg acatcgagca tgatgattat
      301 ctcgctgatc tgctgttatg gattactctg gatgctggca agatgcagtg aaaaaattcg
      361 cgagatgctt tcttttgtaa acataagtac aacaattgcg gattatagta ctcatgtctt
      421 tgcacacctt catgctttaa attacaaatt tcatctggat aaggaaaccg gaaaaataac
      481 cagcgctatc agtcgcgcac agcttgcaat cgcgatgctt atctcgaaca tattgtttcg
      541 gattgtgcct gtttttttag aaattctctt cgctttttta atcatttggc acttctatgg
      601 cttaagctat ggcctctatc taattattat tttgggaatc tatcttgttt ttaatggact
      661 cactcaaaaa aaatccacag tcctgcaaaa aaattgtagc attgctgaat taaatgtaag
      721 ttccgcaatt accgacagcc tactcaacac agaaactgta aaatactaca acagtcaaac
      781 cgtagaacat aaaaaaatag accaattttt acaagaaagc gttcatgcaa atacagcatt
      841 atttagtgga aacggtacat ttttggtgat acaaacactc attattgcgg ggggtcttgc
      901 ctttttgtcc tataaagtag ggtaccaaat tttaattgga cagttaaaaa ttggtgactt
      961 tgtcctgatt aatggctatt tattacagtt atttgaacct ttaagcgaag ctagtgtgcg
     1021 ttggcgagat accaaaaatg atttatccaa aatagaatat tcagcctatt tattagatca
     1081 aaccgatgaa gttgaacaag accatcctga tgcaaaacct ttattcatta ccggcccgca
     1141 tgttcacttt aaaaacgtca ctttcggtta ccaaccagaa caccccattt taaaaaatgt
     1201 aagcttcgaa gttccacccg caaagatgac agctattgtg ggacccagcg gatcgggtaa
     1261 atcaacgatt gcacgattat tgctgggatt atttgaagtc actcagggac aaatactcat
     1321 agatgaccag gatattactg ctgtgagcaa gcattcatta cgccaacaaa tcggaattgt
     1381 tccacaagaa gttctactct tcaacaatac gttgaggttt aatctctgct acggtgctct
     1441 aaatatctcc gagcgtgaaa tcaataacgt aatccaactg gcgcacttgg aagagatggt
     1501 aaaaaacctc cccaaaggaa ttgaaaccaa catcggtgaa gggggtttta aattatcagg
     1561 aggagaacgc cagaggattg gaatagcaag atgtttatta cgcaacccga gtattttgtt
     1621 atttgatgaa gcaaccgcat cgctcgacac gcagactgaa aaaaatatcc aggaaaatat
     1681 tgaggaagtt acaaaacata ccaccagtat agtcattgca catcgtttga gtacgattat
     1741 tcatgctgac aacattcttg ttttacaaga cggagaaatc gtagaagctg gaacgcatca
     1801 agaattaatc gagaaaaagg gattatatta ctccatgtgg aatagccagc agcaaaagag
     1861 tgcatcatga tgaatgaaag tttacccagc attaaagaaa ctatctacta tctttggcct
     1921 tgcgtttgga caaagaacag cctaagagga aaaattcacg ttgtcttggc tctcttattt
     1981 atattgattt ccattgcact aaatttgtgt gtccccattt ttttaaaaga agccattaat
     2041 gcactctctg gacatgccct atttttaaac agcacccctt tagtcatcat tctgacttat
     2101 gcatcggttt ggggtgcatc caaagcttgt atcaccctca gtcaagtaat agcttttcct
     2161 gtagaattag aaggggcgag aaaattttgt ttagaacttt ttgatcacgt acaagcgctt
     2221 tccacaaaat ttcatagaga acgtaaatca ggcgaaattc ttacaatcat agaacgttca
     2281 cactcgtctg ctgttgatct tattggtcga cctattgtga tgatattgcc ggttcttata
     2341 gaaataattt ttgctatgat ttttttgagc tatttttatg atcttttttt tggattggtt
     2401 ctattgttga tgctggtttc ttatatcttg ctaagctatt acaccgctca atggattgta
     2461 aaatgcagaa tgaagcaaaa caatgaagat gcatctgcaa acgcctatct ggtggaaagc
     2521 ctgttgcatg cggataccgt gaaatatttt aatacccaac aggatgaaat caatacagct
     2581 gctcaaaaat tacaagaaaa ggcctgtgca gatactcgag cattaaatgc cgatgcaaaa
     2641 attcatctta tgcaaaatgt cattgtcggt atgtgtgtta ttattatgct cttacttgct
     2701 ggcagccgag tcattgcagg gagcatgaat gtcggagatt ttgtactggt ccatggctat
     2761 ttattcatgt tcatgctgcc attatccatg ctaggctatc gaattcgtgt tacccgagat
     2821 gatttagctc gttttcaaac cgcgattcag ttgctgaaaa ttcctatcga tattcaagac
     2881 caacccaatg ccagaacact taagtacaaa gaaggaaaaa tccaatttga tcacgtccat
     2941 tttacttata atgaacatcg aaaaattctt gatgacgtta gctttatagt tgaacccggt
     3001 accactactg caatcgttgg atcctcagga tccggcaaat ccactctcgc aagattaatc
     3061 tttcggcttt acgatttgaa ttcggggagt attcagattg atgggcaaaa tattagcaat
     3121 atccaacatg catcactcag agcaatactc ggtattgttc ctcaggaaac tgctttattc
     3181 aatgatacct taagaaataa cctgatatat ggaaatccgc atgtcactca tgatgaattg
     3241 gcggatgcaa tacaagcagt acatcttgac aggttcgtgg caaaactgcc tgatgggtta
     3301 gaaaccagag ttggtgagcg cggattaaaa ttgtctggtg gcgaaaaaca gcgagtggcc
     3361 atcgctagaa tgctgcttaa aaaacctaaa atttttattt ttgatgaagc aacatcttca
     3421 ctggatatga aaacagagaa agacattcag acctgtctca aacagatatc gatcaacaca
     3481 acaacactta ttattgcaca tagactttct acagtaacgc atgcagataa tattctggta
     3541 ctcgctaaag gtgtgattat tgagcaaggt acccacaatg aactactaaa tcaaaatggt
     3601 gcctatgctc aattgtggaa agctcaaagt caaaataaaa ttgacacagg gtctattaat
     3661 ggctttgttc cttagctcat tatcctccga aaaatacctc tatattttga ggaggataat
     3721 gcttggttat gctgtgacac caatggaggc ggcattatga atataaaaca aaacgacaca
     3781 tcaaccactc cccctatttt atatggtaca gcatggaaag aagatgacac aaaacgtttg
     3841 gtgctccagg cactcaactc aggatttcga gggattgata ctgccaatca acgtaggcat
     3901 tattttgaag aagccgtggg tgatgcaatt gatcaatttt taacaactag tcaaaaaaca
     3961 cgcagtgatt tatttctaca aacaaaattt acctctgtac atggccaaga tcatagaaaa
     4021 ccttatgatg aatttgattc attgaccaac caggtcaagc aatcctttgc aagctcacta
     4081 gaacatttac agacagacta cattgacgcc tatatacttc atggcccttc actatctcat
     4141 ggaataatcg atgcagattt agaaatttgg caggccatgg aagagctggt gtgtagtaga
     4201 aaggtaaagt ttctcggcat ttctaacgtt aatatggtac aagttgaaga actatataga
     4261 aaagtctcta taaagccgtc gtttatacaa aatagatgtt tcgccataac acaatgggat
     4321 caagacgtta ggacatttag tcaaaaaaac aagattatct atcaaggatt ttctttgctc
     4381 actgcgaatc agcggtattt attaaaccct cacatgcaat cacttgctgt aaaatatgat
     4441 aaaaccatcc cgcaaattat atttcgcttt gcaaaccaag tggggatatt gcctttaacc
     4501 ggcactacaa atcaacaaca catggataat gatttaaaca tatatgactt tgagcttaca
     4561 caagaagaaa ttcaatatat agaaaatata ggattataag tgaaccaata tgaccattaa
     4621 aattgaaaca ccaaggatgc ttttgcgttt aattaaggat gaggacttag atcaagttgc
     4681 tcagcttcat gcagaccgag aagttagaaa attctttcct gatggaacac aagatcgcga
     4741 gcagactaag cgaagaataa aacagattat gaacctttat ggagataaag gattgcctgg
     4801 ttttgttata ttcaataagg tgactcatga attcattgga cgatgtggat ttgggccaat
     4861 tgaaacaggg gaaattgaag ttggatacct tattgtaaga aaattttggg gtatgggtta
     4921 tgcatctgaa gcactagagg cacttcttga atggagtaaa ataaatatca attctgatta
     4981 tattattgct tttgcgccac tcaaacatag tgcatcacat cgagtaatgg agaagtgtgg
     5041 tatggaatat tataaagatg aacttggtca tggtgttgag tgtaaatttt atcgttccaa
     5101 aaataaataa tttataaaac aggtcaatta gcatgacaaa aattacaaca gatgaagccg
     5161 cgttaaaatt agctgtactt attgatgctg ataatgctcg agcagttatt attgatggtc
     5221 ttttaactga gattgctggt tatggagatg ctatcgtaag gagaatttat ggcgatttca
     5281 ccttaccatc tagcgcacaa tggaaaaagg tattgcataa atacgctata aaaccagtac
     5341 agcagtttgc ttttacttct ggaaaaaatg caacagatag tgcacttatt attgatgcta
     5401 tggatctact ttatacgcat cgttttggtg gtttttgtat cgtgtcaagt gatagtgatt
     5461 ttacaagtct tgctaaccgt attcgtgaag aagggttgca agtttttgga tttggagaaa
     5521 aaaaaacacc agaggcattt cgtaatgcct gcaataaatt tattttcact gaagtactac
     5581 gccctgtagc accacctgat caattaatta gccagtcaaa aaagagaaag cagcctgtta
     5641 aacaagcaaa agctaatgaa ccctcagcac aagaatttcc aaaagaattt attctagaag
     5701 cattaaataa ctcatacgat gatactggtt gggcatacat aggaacattt ggtggctatt
     5761 taactaagtt aaaaccagac tttgattcca ggctttatgg tttcaaaaag ctgagtgatt
     5821 tggttaaggg aaaaccggag atttttgaaa cggaagaacg agtcaatcct ggatcgaaca
     5881 caaaagtttt atatttacgt ggtagacaag aataacgtgg aaataattaa tgaatctatt
     5941 agaaaaaatt gcagcattag aaaatgaagc tactgaattt ggttttcagt gggaaacgac
     6001 cgatcagatt atgactcaaa tccaaagtga gtgtattgaa gtcgatgagc atttaaaagc
     6061 aggaattaat gataactcat ctgctttgca ggaagaaata ggtgacctat tgcatgccgt
     6121 gttttcactg tgtgtatttt gtaaattaga tctcaaagat acactgcaac aaaccgtgga
     6181 aaaatttgag cggcggctcc gcgctgtcaa aatgattgct catgaaatga aactcattaa
     6241 tttggaagga caaacttttg atgagttgat gtctatctgg aaacaagcaa agagcagagt
     6301 aggttaacgc tgggtgagca tgacttgtaa attgggtagc cgaaatgtag attcagcata
     6361 aaatcacaaa cgcgcaattg tcctgcgctt gataaaatat tttcatgctc gcataaattt
     6421 ccgtacaaaa ttaatgaata aaatcaacct ataaaaagaa gacaggtcgg gtaacaggat
     6481 cgagttgccc cgatcccgtc ccctaagaac cttactatta cccataagtc tataaattat
     6541 aagaaaaact ttttctttaa tttaactctc tgttataaat aagggcagta ttttgactga
     6601 taatgagagc aaatgataaa agggaatcaa aataactcat cttctggatg ggcagagagt
     6661 gagttcggaa tagttaattt tggtgataaa cgattaagta aaagacttct aaaaatagca
     6721 gatagctttg ccaactcccc tgaatgttca ataaatcgag catgtgacga ttggcatcaa
     6781 agtaaagcag cttatagatt ttttcaaaat gatgctgtat cggaaagaaa aatccttgat
     6841 agtcatatca ctaaaactat tgaaagagcc aagaactatc caactatttt agccatccag
     6901 gatacgagtt atatttctta taaaaatcat aaaaagactg aaggattagg aattatagca
     6961 gctagagttc gctctaaaac aactaatttt caaactcatg gattggtaat gcataccaca
     7021 tttgcagtaa ctacagaagg cctgcctata ggattactgg atcaaaaaat tagttctaga
     7081 ccgcttttag atgagacagt aaaggagttg aaaaaaagaa gtcataatat cgctcttcct
     7141 atagaggaaa aagaaagtat gcgttggatc gagtctctcg aacactctaa taattatccg
     7201 gatttaaaaa atgctaaggt ggttactgtt tgtgatagag aggcagatat ttatgattta
     7261 tttgaagtag catcgacaaa tcaatgtcct tttgtagtga gggcacgtca agatagaaca
     7321 gtaaataaga catcaattta ctctaaaaaa agtggtgaaa aattatggga tttggtgagt
     7381 ggttcgcctt gtcgggggga aattcaagtc actattcctg ctcgagataa taagcctaaa
     7441 agaacagcaa cattagaagt aaggtttgat cattttgtga tgaaccctcc taaaaataac
     7501 gtgaaacgta aaaccagaac actccctgat ttaaaactaa atgcagtgta tgtcatagaa
     7561 caatctcctc ctctgggcga agagcctatg aattggatgt tgttgaccaa catagacatt
     7621 aataattttg aagaggcagt agaaaaaata caatggtatt gcttaagatg gaggatagaa
     7681 atttttcaca aaatcttaaa atctggtttt aaagttgaag aatgcaggct cggtgcagcc
     7741 gatagattag ttcgctttct tacaataatg agtgtcattg catggcgaat tttttttatc
     7801 acactagttg ctagagaaag ccccgatctt ccttgttcgt tcttattggc taatgaggaa
     7861 tggaacgtct tgtataccaa aatacatcat acaaaacact atcctgaaac accacccaca
     7921 ataaaagaag ccgtgaaatg gatagctcag ctaggcggct ttttagcccg taaaaacgat
     7981 ggggaacctg gtcctataac attgtggaga ggatggaaaa gattagtcga ccttgcggaa
     8041 ggttggaatc ttgctctttc ttagttatgg gtaatagtaa gcctaagaac gcagcatgcg
     8101 actttcaccg cactacgctc aagcctttct gaagctattc acccagcagg tattcgctac
     8161 caataacatt caattgtttg tcctttattc gttgaacaaa ggagcagtct ttagcccatt
     8221 tttttctatc ttcaaagtat ttaacatact cgggtagata ggggttggcg ctcgacctaa
     8281 ttttgacgtg tcgttgtatt tttatatcca tcattttgtt aatacaaaca tacttcttcg
     8341 taccgtcctt ggccttaacc acgtcactaa aaatccagcg ccttgtaagg ctacgatttc
     8401 gaaaataacg atccattgct ttatagcgat tatgaccact aaacttcctc atcgtccaac
     8461 ggaatgtttc ttgatatatg taattatcca gttcggaaaa tgttgctttt gagacgactt
     8521 ttcgatgata gttagcccat ccttttatga taggattcag cgctgagata agctccgagc
     8581 ctttccaacc atatcctttc ttgacggtct ctttgatttt catttgtacg gatttaatgc
     8641 tgtcttttga gggcgtagtt aagaacttac ccttatattt cctgacatta aatccgagaa
     8701 aatcaaagcc ttcctcgata tgcacaattt tggttttttc ctgtgacaat gaaagacctc
     8761 gttgtgcaag aaagtttgaa attatcggca tcactttttc tttgaggata tcaggactgt
     8821 ttgcagttac gatgaaatca tcggcaaaac gaatataatt tattttattg ccttgcccac
     8881 agccggagtg aatttccctc tcaagtccgt ctagaaccat atttgcgagc agtggtgagg
     8941 ctggaccacc ttgcggagta cctcgtgctg tttcaaataa ttgattcttt tccatgtagc
     9001 ctgcctgcaa ccactgtgtt agcactcgtt gatctattat gatattactt ttgagccatc
     9061 catgatcaat ttcatcaaaa caggccttaa tgtcgccttc taaaatccat tgagcgcaat
     9121 ttttccgtgc caaggttgca tagcactggt atatcgcgtc atgagtactt cgctttggtc
     9181 taaatccata ggaatttaga tcagctgtag tctctccaac gggttctaat gctaacaaat
     9241 agagtgcttg cattgcccga tctttcaaag tgggtatgct tagtggacgc tcttttccat
     9301 tcttcttcgg gatgtaaatc cttcgaagcg gagttgcctt ataccctctt gcttttaggt
     9361 tgcgcaccgc ctcgcatttt tcttctgatg ttgtccaaac aacaccatca ataccaggcg
     9421 tcttgcttcc ttttgctgtc gttactcgtc tcactgcaag aagttttgcg ctgatggaat
     9481 taaccagcag ccattgcaat gacttcactt ttccgtgctg tttattactc actgcctttg
     9541 cgatacgcac ttgaagtctg tatacatttt tctcaatact aggccagtcg agctgatccc
     9601 actttgtatt taagatgaat gcgtcaggcg caccagataa taaattatcc gtcatttgct
     9661 ttcctcactt ctacaaattc tgcaaattct ttcgcaatga aagaccaatc ggacgtgggc
     9721 ttcttttcag accgggtgac attgaaaccc gtatccaact cattacaaat tggccttcgc
     9781 tttttccgat atcccaagcc tacacttcca taggcagcct ttgcaggcta ctgtcttctt
     9841 acgaagagaa atatagggtt tccaagttcc gctgttcaag taatgccggg ttaggtgtct
     9901 gctctcggcc ggaaagtttc gtaatcgtgt ggggttcgtg tgatttcccc agctaccttt
     9961 cgtacctttt ggttcaagcg attcagccaa ttgcgcttgt tgcgagttac gacctttatc
    10021 acagattcac ttatgttcac cataccagct acctagtagc tatcccgatt ttggctatca
    10081 ggtagattta cttcctttcg gatgttaaca tctcactatc agcccttcag ctgtagtttc
    10141 actacattgt cagggaggct ttattaactc ccgtaggttc atctgacgat acaaatggtt
    10201 ttcgaaattc cttccgatta acaactcaaa acagcgactt atcttgtcgc accacacctt
    10261 tcgcaactgg ttgctgtgtg tgtaactcat tgtatttatt caatataaaa tcatatttgc
    10321 aagaatcggc tacgaaacac taaatatttg ctaaatagca atcaaaaacc agtatgcaaa
    10381 tgtgcatcac ttttaaatat tttgtcagat ttatctgatg cagatctgca tactgacact
    10441 cgtaaccagt tgaaatatat agcctaatat gatctaattg taattagggg tggcgtgcat
    10501 ggatgcatca gccagacatc caacacaatc gaaaaagagg ttatattatg gctagaatca
    10561 ccgtgacctt acctgacaat cttcataaac aaataattaa aatagccggt aaggagaatg
    10621 attcactctc ttatacgaca acacggcttg ttgaaattgg actgatggtg atgaacagta
    10681 agtctgataa taaagatgag cagaagacta caaacattga agagtattgc caaaaactca
    10741 ttattcaaat taatggcatc atcaaagaaa ttgccgttga taaatttaat tttgatgatg
    10801 ataaaatcgt tcaaataacc aaagatacct taaacaaatt taataaatta aaaggtattc
    10861 aacaggaatc actatagctt tatcttgccc ttagactttt aacatactcc tcataatccg
    10921 ttggtcctag gttcaagtcc tagtgggccc accaataaaa tcaagtagtt acgagtagta
    10981 aaaactgaaa cggtctgagg ggcactgatg gggcactcag aaataacaaa tagcaactca
    11041 tcccaataac atggggcatt taaaataaat tcctttacct gctattttta tcaatttcct
    11101 cacttaacaa gtgtatagcc tcattaattt cataagtaat tgccaaagaa tcctctttaa
    11161 tatcaaaatc aattttacca ccaccatggc cagcatattt acttctttta gcttgcaagc
    11221 accttagtgc tttcattatc ttatctgcat ttggagaacc ccagtttttc aaaagtatct
    11281 ccaaacactc aaggctcctc ttattctctt cagcatttac taatctacga atgacctttt
    11341 cctgtaatcc atcaataact aaaatagtca aattcaacaa ataatctaaa tactcttttt
    11401 tgatatcagt aataactggg tgaatctgct ttaatagcat atcaatatca ccccctttag
    11461 gagcccataa tacaaatttt tccttatcta aagaataagg aggaaaattg gctaattttt
    11521 gttttatcgc tctaagagaa ctttcttctt catcgaattc agctaaaaaa tccgtgttat
    11581 aagcgacttt tgaaatcccc gcttttggct cttcattata ctgcttccaa tgaagctgtt
    11641 ctttatgggg taattgccct aaacaataaa tataagcgtg cacctgtcct tcatcattta
    11701 ttgagtaaga cttcaaactc caacttccat agcaatgaat tccccgatct ctgacctcat
    11761 atttctcatg attattttta tatttagaca atacttctgg attaaaaaat gctgggcttg
    11821 tctgaaaagg tttaccagta tctttatagt aattatcaag catttctgga gcacaagacc
    11881 attcgactat tttactattt ttaaaatcag taataataaa attctcgtat ttcttaggat
    11941 cgcctttttc aatctgctca attgaataga ctgtttggat tacctctgca cctttaaacc
    12001 gtggtatatc ttcatattca taaattcttc gtttgattct tgaagtttgt aaactactaa
    12061 tactccattg cagaggactc tctaattctt ttaactcaaa a
//
LOCUS       DACVWI010000091        11829 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.091, whole genome shotgun sequence.
ACCESSION   DACVWI010000091 DACVWI010000000
VERSION     DACVWI010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11829
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.091"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1907)
                     /gene="setA"
                     /locus_tag="JBH85_08980"
     CDS             complement(<1..1907)
                     /gene="setA"
                     /locus_tag="JBH85_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SetA"
                     /protein_id="HAU0946334.1"
                     /translation="MYKIYSYLGWRIDMKTENLPQAGQEAQIDKKIHFIWVGHIMPQK
                     NIQVVSEWAEKNPGYETIIWVDKKIAPAKELDLFILDMKSKGITVKDINEEGVCRDSI
                     RHELDQESPNYGMVSDMLRLNILAAEGGIYLDSDILCSAPFPDEIYAPFGFLLSPWSQ
                     GANNTLCNDIILCSKGNQIIQQLADAIEQSYIARDSFEFTHEYASMKETKGERIAKTL
                     GVTGPGFLFHQLKKMGILNDKSEMEAIHWELQDQRYLIDGSVKEPDYFYVPQNNTNDA
                     SWVPSIKRPGIENMSFQERLENAVQLIAFDIQKTGLFNLDHYANELKVKQNSWCIAAE
                     TSPELKPDSYLLIRPRDKTGEWTLYYVDEDKKLNPVTLPVIKGAIKLSEVSDPLRKFH
                     TLLSQVSDPVNPTAHELKQIGRALIELKPRQDEWHCKNKWSGAEEIAQELWQRITSNE
                     TLRAQIKQCFTQFESLKPRVAELGLTRASGAGTEVEAHESTVKEQEIISQNTVGEEGT
                     KEKNSVQLASENSSDEKIKTAHDLIDEIIQDVIQLDGKLGLLGGNTRQLEDGRVINIP
                     NGAAMIFDDYKKYKQGELTAESALESMIKIAKLSNQLNRHTFFNQRQPETGQFYKKVA
                     AIDLQTTIAAE"
     gene            2143..3510
                     /locus_tag="JBH85_08985"
     CDS             2143..3510
                     /locus_tag="JBH85_08985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946335.1"
                     /translation="MKTLTTRIFSLIMLLALHFNPIVFAHTNNTNNKGLSASINNGVG
                     SSSSNNTYVTPQAFWNLYFDFTGDETPGYPKGKINISQTLFQSEMKKNSSLAQQNEGQ
                     LILFINSTLYIYNSDRQLKLKQLMRTAPNSGFTEMTAISHIGPALMYLAKIKENGDAS
                     WKSQMENLLKDIQAVKVINAQTPNNWLEQVNAPAWKPHLTTIHNMIDYACSMAGNYMS
                     DVLNEKLSFDMASLQNDFLNGNKTYPIPYNNVMIGTFMLTALQSMDQLHSKISQLKID
                     WPHAKVIIRFVAGSNVSAGVSKGSNWLVPFVQALSNNKLATDRIYITPYAAVKPSLGA
                     QELTQADYNYYNNTVWGARHNRRIIANEVFTNITSIFLPDRPAIPGDYTYSKPPKIED
                     FLMRLKFSLAEPTEMLSNTVGFWMAGELAEKNWNYNKISIPGITTGFPEGISTYPNNN
                     PVIQR"
     gene            3507..3809
                     /locus_tag="JBH85_08990"
     CDS             3507..3809
                     /locus_tag="JBH85_08990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946336.1"
                     /translation="MIKKITRKYYFIAYISYFRTIQNGTCPLSIFKNIGSKRYNTFSL
                     DSAQYLAIPQLSKDEPGIPANINGGNAKVDVLIFKWINGKFHLYQKIPGHGNEGIE"
     gene            3983..4279
                     /locus_tag="JBH85_08995"
     CDS             3983..4279
                     /locus_tag="JBH85_08995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946337.1"
                     /translation="MPSGKGIPSEAMYIRDFEKSLYEYCESRGVQFKKGTFSGLSDNL
                     VSYKDTKENIRTVKCDMVVDCSGSNRMVLKETTHPRRNRSLAPGETTMQITTKI"
     gene            4302..5345
                     /locus_tag="JBH85_09000"
     CDS             4302..5345
                     /locus_tag="JBH85_09000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946338.1"
                     /translation="MVDIRSAKNEEGGVNYFIYYEVPDNLKEKDKSVQIEFLKDLLKL
                     KYGFEDIDFTIHSFGHFPVFPKYVDKPFYLGEDLPVVLAGGDCQIEPDYRKGIGIESG
                     IERANFLFDTVHGTSKGLGFLFDNYYQQVARYVGYHGNLIEQFYLQRVDNIKGSSLEQ
                     AKKILCSACGSVKEIEDVAAIASELKLLGNELFKKPNYESALECYLNAIHLYQSFEKA
                     LPLTMDFVTLHSNACQTCLKLKKYEQCINLANEGIKAYAEIKAEDKEMLFKLLFRKAS
                     ALVELGNAFDVKTQRKEFDEALKDLKETYELMQENSGVNNTAFVKQIQTKIVTIEKKL
                     PPPQEEINKIEFI"
     gene            5505..6710
                     /locus_tag="JBH85_09005"
     CDS             5505..6710
                     /locus_tag="JBH85_09005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxy-3-methylglutaryl-CoA reductase"
                     /protein_id="HAU0946339.1"
                     /translation="MKMLNKGYIKTTPYGLGFSELFFEDNLKKYFSDPSLEVLSAEYS
                     PSASDKMAWSAKHPKQGDHPIGVQRYKISFKKNGKIQTRHVIVKSKISDKHYLQVISN
                     AFTKCGIQTEMPILDYLSQLEFSNLNRKEITIYNMQHSFEAFQYAMPLCYGTYLDEQE
                     EACVLILECLDEEWLSLDPFNTSKWDQTAIEALIDAIAPMHAVWYKKEKTIAEIKGFK
                     NPLNTDQMQRFIPYWNALEKAVKTSNLPFLTKEDYLFHTHLIETMPQWHIKIDAMAKT
                     LVQNDCVPKNIALCNQNGTKKVLVYDWEIATIHIPQRDIVEFLSYVLPENFDSTLLGN
                     YIERHRIKLGETTKQAIDATEWRLGFQYALYDYLIQRVFPQIPFEKLEARNIAKVYNN
                     ARRMMALLD"
     gene            6730..7467
                     /locus_tag="JBH85_09010"
     CDS             6730..7467
                     /locus_tag="JBH85_09010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoin racemase"
                     /protein_id="HAU0946340.1"
                     /translation="MTHIRVILPGYNTKVLNKDMLKPFENPGLELSVDYADLAVDAVR
                     HEFDIALMAPYLIKKVIKAEQEKVHAIVIDMMADVAMRALREAVTIPVVSLAETATHV
                     AAMMGNNFAIINTTDELTPIQESLVRSYGLYDRLACIQGIQLDPHDDYRSEKIIHGLV
                     EQCADAVIKKRADTLIFGSGRLIGYREVIQKGLEEKGLHITIIEPLPTGIYFAKFLVD
                     SKISQSKYVYRSPDASTLKTYSKILGN"
     gene            complement(7507..8820)
                     /locus_tag="JBH85_09015"
     CDS             complement(7507..8820)
                     /locus_tag="JBH85_09015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HAU0946341.1"
                     /translation="MNSIPHLILGDIITPTQAGQSLLIKKGYVLINGDSIIEVGEQAH
                     FNKEISYTVSNYPDHLILPGLIDTHSHLSQYAICGAGDLPLMDWLNTLVFPAETAFSS
                     NLQRCQRHAELYMHACLGSGTTTINTMVTSSRQATEIVCDVAARLGIRAFIGLVLMDR
                     NAPDNLLVDCAQAFKDLTVLKDRYHGKNNIHITVSPRFAVTCSAAMLRQAGEFARANK
                     LILHTHLDKDEGFDELIQSLFSTAHDYFDVFESTQCIADKTVFAHGTLLSLHEMKRMG
                     DYAKQVGISHCPSSNFSFAMGMAPVSFFKGLGIEVGLGSDSGGGDSLSLFDEMRSASF
                     TNKALWRLDKKTALIDAKTWLYHATLGGAKLLGLEKQIGSIEAGKKADLIILDDRNNY
                     PLAELSSLSQELALDELQYRLARVIARSCENKLVAVYIDGKKVYQ"
     gene            complement(8989..11802)
                     /locus_tag="JBH85_09020"
     CDS             complement(8989..11802)
                     /locus_tag="JBH85_09020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1986 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946342.1"
                     /translation="MGKTTTPEINQLNKYVIDKKSIKLANDLWARSVPLKGTPAERYI
                     VGTRKIPIDVAEKLQIRSLKGPIGIPEFDKNKPYKDYVVAPVYNLDDELVGLQIIQID
                     PDGNKATNPENSHFFCKRYLGQTNPLREGKAAVINKTDNVDVVFIAEGVETAASVASL
                     DEVRNNYSVLASMGVSQLPATLAYVKTHYPPGSTVVLLKDHDDPVANPLANLEFEKAC
                     KALVFAGYKVIVKEPPNLNDDWNDVIVRGGVELLTRQFNLDNPVLIASDTPARNSKVT
                     PHFKTLYADLLKNEKLAEEQVVYGLLDKLIGQLIDKLKKTQSSDDLHKTIKEIDEVAR
                     TTEGVRTLLPETKNIPYQLRGLRRALKELKFLEDRRRDSLREDEDIDFSTDPQTNSNG
                     DLFKAYSYVMRHCLKHLQTLNPSDVFDLKKHSEILGFYERRLNNIDNEIKRIPQLISE
                     FGSDDEFVIKQLKNKLKSLKLERKLYAQEFHEMKQQLHLLRSAHPKGNTPYANYYKQF
                     VEEANSIMMKGKTQTKAIREELTGVWANRKQELQEDYKKRIDAARQHFVSERKKAIPP
                     MIEYLEALRVIVKERSKEIDGKKSQEKENTASASESRNYQERYLRAMEELSQSEGVDK
                     LLQDWLNNLENFKTVSPLIYYPPQEGATVEGVDLIDYDSDEEKTLDDLRKKIFDDEES
                     LLESPINDREKGKAKLEGKAGDSNPQVMSGPSHLAEGLMQSVQPSSLKTSDLQLYLTI
                     KDFSERLAVSLYKSFEVISPESGERQEFDGLALREKGLTIIERKTNDGTGPGLFQRNF
                     CQQKIVSKHDFVLKNMIAELKSQSHPEKFIDIDVPKPLNWYSENFTSEMQEHLVNAAK
                     SMVVKALQNLTLEFNVNRPNAYSATDYRGLFFNRSLIPGGVSLRFSQASKGNEAVAHQ
                     RIDEISKARTAERESLILPMRGQ"
BASE COUNT         3679 a         2414 c         2081 g         3655 t
ORIGIN      
        1 tattccgctg caatggttgt ttgtaaatca attgcagcca cttttttata gaattgcccg
       61 gtttctggtt gcctttgatt aaaaaaggta tgccgattaa gttgattaga cagttttgcg
      121 atttttatca tagattctaa cgcactttct gccgttaact ctccttgctt atatttttta
      181 taatcatcaa atatcatagc agcgccatta ggtatattaa taactctacc atcttccagc
      241 tggcgagtat ttccacccaa taaacctaat tttccatcca gctgaatcac atcctgaata
      301 atttcatcaa ttaaatcatg agcagttttt atcttctcgt cagatgagtt ttctgacgct
      361 aattggacag aattcttttc tttagtacct tcttctccaa cagtgttctg cgagataatt
      421 tcttgttctt taacagtaga ctcatgcgct tcaacttctg ttcccgctcc agaggctctt
      481 gttaaaccta actcagctac ccttggtttt aatgattcaa attgagtgaa acattgttta
      541 atttgtgctc ttaacgtttc atttgaagta attctttgcc aaagctcctg tgcgatttcc
      601 tcagcaccag accatttgtt tttgcagtgc cattcatctt gcctgggttt aagttctatt
      661 aaggctctgc caatctgctt taattcatga gctgttggat ttacaggatc agaaacctgg
      721 cttaataagg tatgaaattt tctgagggga tctgagactt ctgaaagttt aatagcccct
      781 ttaatgactg gtaatgtcac aggatttaat tttttatcct catcaacata atatagagtc
      841 cattccccag ttttgtccct gggtctaatc aacaaatagg aatccggttt tagctcaggg
      901 gatgtttctg cagcaataca ccagctgttt tgttttactt ttaattcatt ggcataatga
      961 tccaaattaa ataaaccagt cttttgaata tcaaaagcta tcaattgaac tgcattttca
     1021 agtctttctt gaaaactcat gttttctatc cccggccttt tgatactggg aacccaactg
     1081 gcgtcatttg tattgttctg tggtacataa aaatagtctg gctccttcac actaccatcg
     1141 attaaatacc tttgatcttg taattcccaa tgaatcgctt ccatttcact tttgtcattc
     1201 aggattccca ttttttttaa ctgatgaaat aaaaaccctg gaccagtcac acctaatgtt
     1261 ttagcaattc tctccccttt tgtttccttc attgatgcat attcatgagt gaactcaaaa
     1321 gaatctctcg caatatagga ttgctcgatc gcatctgcta attgctggat tatttgattt
     1381 cctttgctac ataaaatgat atcattgcaa agagtattat tagctccctg agaccaggga
     1441 gacaatagaa acccaaaagg cgcataaatt tcatcaggga aaggagcaga gcataagata
     1501 tctgaatcca aataaattcc tccctctgca gccaagatat ttaatcgcaa catatcactc
     1561 accatcccat aattaggaga ttcctgatcg agttcatgac gtatgctatc ccggcacaca
     1621 ccttcttcat taatatcttt taccgtgatg cctttggatt tcatgtctag aataaaaaga
     1681 tcgagttctt tggcaggcgc tattttttta tctacccaga taatcgtttc atagccaggg
     1741 ttcttttcag cccattcgga gacaacctgg atgttttttt gaggcataat atgaccaacc
     1801 catataaaat ggattttttt gtcaatttga gcctcttgac cagcctgtgg taaattttct
     1861 gtcttcatat caattctcca acctagatat gaatatattt tatacagatt gatattaagc
     1921 ccggatgagc atcataagaa taaaactcat agtacatgcc agttaagaat agccagaacc
     1981 taacgagagc gattaagaaa taaagaataa ctacaagctg atttcccagg tcctaaccca
     2041 tgagtgtcga tggatttccg taacgattat caatataatt ttccggtaaa tttgtggctt
     2101 taatttgcta ggaacacagc ccaaaccacc aaggattgaa tcatgaaaac cttaacgacc
     2161 cgcattttct ccctcatcat gttattggcg ttgcatttta atccaatcgt ttttgctcat
     2221 accaataata ccaataataa aggtttatcg gcttccatta ataatggtgt gggcagtagc
     2281 tcttctaata acacgtatgt cacacctcaa gctttttgga atttatattt tgatttcacc
     2341 ggagatgaaa ctccaggata tcccaaaggt aaaatcaata tttcacaaac cttatttcag
     2401 tcagaaatga aaaaaaacag cagcttggcg cagcaaaatg aaggccaatt aatcctgttc
     2461 atcaactcca cactttatat ttataatagt gaccgtcagc ttaagctaaa gcaattgatg
     2521 cgcactgcgc caaattcagg attcactgag atgactgcga tatcacacat tggtccagct
     2581 ctgatgtatc tcgcaaaaat taaagaaaat ggcgatgcaa gctggaaatc acaaatggaa
     2641 aatttactta aggatatcca ggcagtaaaa gtaatcaatg cacaaacacc caataattgg
     2701 ctggagcaag tcaatgctcc agcctggaag cctcatctca ctacaatcca taatatgatt
     2761 gattatgcct gttctatggc aggcaattac atgagtgatg tattgaacga aaaactatcg
     2821 tttgatatgg cctctttaca aaacgacttt cttaacggca ataaaacgta tcctattcct
     2881 tataataacg tcatgatcgg cacttttatg ttaaccgcct tgcaaagcat ggatcaactt
     2941 catagtaaaa taagccaatt aaaaatagat tggcctcatg cgaaggtaat tattcgtttt
     3001 gtcgcaggat ctaatgtttc agctggcgta agcaaaggca gcaattggtt ggtcccattt
     3061 gttcaagcac tatccaataa taaattagct acagatagaa tttatatcac gccttatgcc
     3121 gcagtgaaac catcgttagg cgcacaagag ttaacacaag cagattacaa ctattataat
     3181 aatacggtat ggggcgcaag acataaccgt agaatcatcg ccaacgaagt ctttactaac
     3241 atcacgagca tcttcttacc agatcgacct gctatacccg gtgattatac ttattccaaa
     3301 ccacctaaaa tcgaagattt tctaatgcgc ttaaagtttt cattggcaga accgactgaa
     3361 atgttatcca atactgttgg gttttggatg gctggtgaac ttgccgaaaa aaactggaat
     3421 tacaataaaa tcagcatccc gggtattact actggtttcc cagaaggcat atccacctat
     3481 ccgaacaata atcctgtaat ccagcgatga taaaaaaaat tactcgcaag tactatttta
     3541 ttgcttatat ttcctatttt aggacaatcc aaaacggtac ttgtccccta tcaatattta
     3601 aaaacatcgg gagcaagaga tataacacct tttcactcga tagtgctcaa taccttgcta
     3661 tacctcagtt gtcaaaagat gagccgggta ttcctgccaa tatcaacggc ggcaatgcca
     3721 aagttgatgt cctcattttt aagtggatta atgggaagtt ccatttatat caaaaaatcc
     3781 cggggcatgg taatgaaggc atagaataaa ggatctaacg tatctcgcta cctcctcaat
     3841 ctattcaaaa ccaaaaactg caaataaaaa gcatagttat accaaattca aacagacagc
     3901 agcatttata aaataaaata gaatagccca aagcaatgct tacaaagcaa tcaaatcgat
     3961 aagctctcga ttctcaatta gtatgccgtc cggcaaaggg atcccgagtg aggccatgta
     4021 tatcagggat tttgaaaaat cactatacga atattgcgaa agcaggggtg tacaatttaa
     4081 aaaagggaca ttctccggcc taagcgacaa tttggtttcg tataaagata ccaaggaaaa
     4141 catccgtaca gtcaaatgtg acatggtagt tgattgttct ggttctaatc gtatggttct
     4201 caaagaaact actcatccca gacgaaatag atcccttgct ccaggcgaaa caactatgca
     4261 aattacgaca aaaatatgat tggccaaatt tttgatttcc agtggtcgac atacgctctg
     4321 caaaaaatga agaaggtggc gttaattatt ttatttatta tgaagtaccc gataatttga
     4381 aagagaaaga caagagtgta caaattgaat ttcttaaaga tttactcaaa ttgaaatacg
     4441 gttttgaaga cattgatttt acaattcatt cgtttggaca tttccctgtt tttcccaagt
     4501 atgtcgataa gccattttat cttggtgaag acttacctgt tgttctggca ggcggtgatt
     4561 gtcaaattga acccgattat cgtaaaggaa ttggcataga aagtggaatt gaacgtgcca
     4621 attttctatt tgatactgta catggtacaa gtaaaggact ggggttctta tttgataatt
     4681 actatcaaca agtagctaga tatgtaggct atcatggcaa cctgattgaa cagttttatc
     4741 tgcaaagagt ggataacatt aaaggctctt cgcttgagca agcaaagaaa attctttgct
     4801 ctgcttgcgg gtcagttaaa gaaatcgaag atgttgccgc cattgctagc gaattaaagc
     4861 ttttaggcaa tgaacttttc aagaaaccta attatgaaag tgctttggaa tgctatctta
     4921 atgctatcca tttgtatcaa tcctttgaaa aagccttgcc actgacaatg gattttgtga
     4981 cattgcattc caatgcctgc caaacctgcc tgaagttaaa aaaatatgaa caatgcataa
     5041 atctggcaaa tgaaggcatc aaggcttatg cggaaataaa agcagaggat aaagagatgc
     5101 ttttcaaatt attattccga aaagcctcag ccctcgttga actaggtaat gcttttgatg
     5161 tcaagacaca aagaaaagag ttcgatgagg cattgaaaga tctgaaagaa acatatgagc
     5221 taatgcagga aaactcaggt gtgaataata ccgcttttgt taagcagatt cagaccaaaa
     5281 ttgtaactat cgagaaaaaa cttcctcctc cacaagagga aataaataaa atcgaattta
     5341 tttagcttta aattggtaac attataaaaa tgcctggctt gctcattaat ggatagaaat
     5401 ctatctgaca atgaacaagc ctaatcatta tgactctctt ccccaataaa tgttcaataa
     5461 agctcaatgc tgctattctt aattgaaata gggttgataa gggagtgaaa atgctaaaca
     5521 agggatatat taaaacaaca ccctatggat tgggattttc agaacttttt ttcgaagaca
     5581 acttaaaaaa atatttttct gatccttcac tagaagtatt gtcagcagaa tactctcctt
     5641 ctgccagtga taaaatggca tggtctgcca aacaccccaa acagggggat caccccatag
     5701 gagtacaacg ttataaaata agctttaaaa aaaacggtaa aatacaaacc cgccatgtca
     5761 tcgtcaaatc taaaattagc gataagcatt atctccaggt tatatccaat gcctttacaa
     5821 aatgcggtat tcaaacggaa atgcctatcc ttgactattt atcacaactg gaattttcaa
     5881 atttaaacag gaaagaaatc actatttaca atatgcaaca ttcatttgaa gcctttcaat
     5941 atgctatgcc attatgctat ggaacttatt tagacgagca agaagaagct tgtgtattaa
     6001 ttttagagtg ccttgatgaa gaatggctat ccctcgatcc ttttaatacc tcgaaatggg
     6061 atcaaacagc cattgaagcg ttgattgatg cgattgctcc gatgcacgct gtctggtata
     6121 aaaaagaaaa aacgattgct gagatcaaag gcttcaaaaa tccgttaaat accgaccaaa
     6181 tgcaacgctt cataccttat tggaatgccc tggaaaaagc cgtgaaaaca tcaaatttgc
     6241 cttttcttac aaaggaagat tatttattcc atactcatct tattgaaact atgccgcaat
     6301 ggcatatcaa aattgatgct atggctaaaa cattggtaca aaatgactgt gtaccgaaaa
     6361 atattgcatt atgtaatcaa aacgggacaa aaaaagtttt ggtttatgat tgggaaattg
     6421 caactattca tataccacaa cgcgatattg ttgagttttt gtcttatgtc ttacctgaaa
     6481 atttcgatag tacgttatta ggaaattata tagagagaca tcgaataaaa cttggcgaaa
     6541 caacaaaaca ggcgattgat gcaacagagt ggcgactcgg atttcaatat gctttatacg
     6601 attatttaat acaacgtgtt tttccacaaa taccttttga aaagcttgaa gctcgtaaca
     6661 tagcaaaagt gtacaacaat gcccgtcgca tgatggcgtt actagactaa ttttctggag
     6721 tgattaagga tgactcatat acgcgtaata ctgcctgggt acaatactaa agttttaaac
     6781 aaggacatgt taaaaccgtt tgaaaaccct ggcctggaat taagtgttga ttatgctgac
     6841 cttgcggttg atgcggtacg acacgaattt gatattgctt tgatggcgcc ttatctcata
     6901 aaaaaagtaa taaaagccga gcaagaaaag gttcatgcca tagtgattga tatgatggca
     6961 gatgtggcaa tgcgcgcact tcgcgaggca gtgacaattc ctgtcgtcag tcttgctgaa
     7021 acagcaacac atgttgcagc catgatgggc aataattttg cgattatcaa tacaacagat
     7081 gaactgacgc ccattcagga aagtttggtc cgtagttatg ggctatatga tcggttggca
     7141 tgtatccaag gcatacaatt ggatccgcat gacgattatc gctcagaaaa aataatccat
     7201 ggcttagttg agcaatgtgc ggatgccgtg ataaagaagc gtgctgatac acttattttc
     7261 gggtcagggc gtttgattgg ctatcgtgaa gttattcaaa aaggtttaga ggaaaaaggg
     7321 ttacacatca ccattattga gcccctgcct accggaattt attttgcaaa atttctggta
     7381 gactccaaaa tttcccaaag caaatatgtt tatcggtcac ccgatgcttc cacgttaaaa
     7441 acgtattcaa aaattttggg gaattaatcc tcttgatttt atctcgaatc tcattaggcc
     7501 tagtggttac tgataaactt tctttccatc aatataaaca gcaactaact tgttttcgca
     7561 ggatctggca atcactcttg ccagacgata ttgaagttca tcaagggcta actcttgtga
     7621 caaagaagaa agctctgcca gaggatagtt attcctgtca tccaggataa tcaaatccgc
     7681 ctttttacct gcttcaatgc tgccaatttg cttctctaat cccagcaatt tcgctcctcc
     7741 aagagtagca tgatatagcc aggttttagc atcaatcaaa gctgtctttt tatcaagcct
     7801 ccataatgct ttattagtaa aactcgctga acgcatttca tcaaaaagag aaagactgtc
     7861 ccctccacca ctgtctgagc ccaatccaac ctcaatcccc aagcctttaa aaaaagaaac
     7921 cggtgccatt cccatagcaa aagaaaaatt actggaggga caatggctaa ttccaacttg
     7981 cttggcatag tctcccatgc gtttcatttc gtgaagtgat aacaaagtgc catgggcaaa
     8041 cacagtctta tcagcaatac attgtgtgga ttcaaacaca tcaaaataat catgagctgt
     8101 actaaacaag ctttgaatca attcatcaaa cccttcatcc ttatcaagat gggtatgcaa
     8161 tatcagcttg tttgcacggg cgaactcacc tgcttgcctc aacatagccg cagaacaagt
     8221 cactgcaaac cggggagaaa cagtgatatg tatattattt ttaccgtggt aacgatcttt
     8281 taaaacagtc agatctttaa atgcctgagc acaatcaaca agcaaattat caggtgcgtt
     8341 tctatccatc aaaaccaagc ctataaacgc tctgatacca aggcgggctg ccacatcaca
     8401 aactatttct gtcgcttggc gactgctggt taccatcgta ttgatagtcg ttgtgccaga
     8461 acccaggcaa gcatgcatat aaagctcagc gtgacgttgg catctttgca gattactcga
     8521 gaaagcggtt tcagcgggaa aaaccaaagt gtttaaccaa tccatcaatg gcaaatcacc
     8581 agctccacaa atagcgtatt gggaaagatg gctgtgtgta tcaattaaac caggaaggat
     8641 taaatgatca ggataatttg acaccgtata ggatatttct ttattgaaat gagcctgctc
     8701 gcccacctca ataatgctat caccattgat caagacatag cctttcttga taagaagact
     8761 ctgcccagct tgtgtaggag tgataatatc ccctaaaatc agatgaggaa tgctattcaa
     8821 ttcatatcct gagatttatt tcttactatc aaaaagtata gacaacctcc tggattaact
     8881 gaaattcgga ttaaaaatac gatagtgaaa agaactcctt cttttcaatt tagatatgaa
     8941 ggagctcttt tgtaagataa ataacctgaa ttattcatcc aatgaacttt attggcctct
     9001 cataggtaaa atcaagctct ctcgttcagc tgttcttgct tttgaaattt catcaatacg
     9061 ctgatgagct accgcttcat ttcctttgct agcctgtgaa aaacgcagtg aaacgccacc
     9121 cgggattaaa ctacgattaa agaacaatcc acggtaatct gttgctgagt aggcattagg
     9181 cctattgaca ttgaactcca aagtcaagtt ttgcaatgct ttaacaacca ttgatttagc
     9241 agcattaacc aagtgctctt gcatttccga agtaaaattc tcactgtacc aattcaaagg
     9301 tttcggcaca tcaatatcaa taaatttttc gggatgagat tgggatttta attctgcaat
     9361 catatttttc aagacaaaat catgcttgga gacaattttt tgctgacaaa aattgcgttg
     9421 aaacaaccct ggacctgtac catcatttgt tttacgctca ataatagtta gtcctttttc
     9481 ccgtaaagca aggccatcaa attcctgtct ttcaccactt tctggagaaa taacctcaaa
     9541 agatttgtaa agactcactg ccaaccgctc ggaaaaatcc ttgatagtca aatacaactg
     9601 cagatcactg gttttcaggc tggaaggttg aacagattgc atcaaaccct cagcaaggtg
     9661 acttgggcca ctcataacct gcggattaga atcacctgct tttccttcca gttttgcctt
     9721 tcctttctca cgatcattga ttggagactc tagtaaactc tcttcatcat caaagatttt
     9781 cttgcgcaaa tcatccaagg ttttttcttc atcagaatca taatcaatca aatctacccc
     9841 ttccacggtt gcaccctctt gaggaggata ataaattaat ggagacacag ttttgaaatt
     9901 ttcaagatta ttcaaccagt cttgtaatag tttatccact ccttcagatt gactcaactc
     9961 ttccatagcg cgtaaatatc gctcttgata attacgcgat tcagaggctg aagctgtatt
    10021 ctctttctct tgactttttt tgccgtctat ttccttactt ctctctttca caatcactct
    10081 taatgcttcc agatactcaa tcataggagg aattgccttt tttctttcgc tgacaaaatg
    10141 ttgcctggct gcgtcaattc gttttttata gtcctcttgt aattcctgct ttctgttggc
    10201 ccatacacct gttagctcct cccggatagc ctttgtttgg gtcttgcctt tcatcatgat
    10261 agagttcgcc tcttcgacaa actgtttata gtagtttgca taaggagtat tgcctttcgg
    10321 atgtgcgctt ctcagaagat gcaattgttg tttcatttca tggaattcct gggcatagag
    10381 ttttctttcc agtttcagac tttttagttt atttttcagt tgcttaatta cgaactcatc
    10441 atcactgcca aattcagaaa ttagctgcgg aattcttttg atttcattat caatattgtt
    10501 caaccttctc tcataaaacc ctagaatttc gctgtgtttt ttcaaatcaa aaacatcact
    10561 aggatttaaa gtttgaaggt gcttaagaca atgcctcata acataagagt aggctttaaa
    10621 taaatcacca ttactattgg tttgcggatc tgtcgaaaaa tcaatatcct catcttcccg
    10681 taaactatca cgacgtctat cttcaaggaa tttgagttct tttagtgctc gacgaagccc
    10741 tcttaattga tacgggatgt tcttagtttc aggtaaaagt gtacgaaccc cttctgtagt
    10801 tctagccact tcatcaatct ctttaatggt cttgtgcaaa tcatcactcg attgagtttt
    10861 cttcaattta tcaatcaatt gcccaattaa tttatccaaa agaccataaa caacttgctc
    10921 ttctgccaat ttttcattct ttaaaagatc agcatacagt gttttgaagt ggggtgttac
    10981 cttgctattt ctagcagggg tatccgatgc aattagaaca ggattgtcaa gattaaactg
    11041 acgagttaaa agttctactc ctccccttac tataacgtcg ttccaatcat cattaagatt
    11101 tggaggctct ttgactatca ctttataacc agcaaacact aatgctttgc aagccttttc
    11161 aaattctaaa ttagccagag gattcgctac aggatcatca tgatctttca gtaaaacaac
    11221 cgttgacccg ggaggataat gagttttgac ataagccaag gtggcgggta gttgagatac
    11281 acccattgac gccaataccg aatagttatt tctgacctca tccagactcg ccacactggc
    11341 cgctgtttca actccttcgg caataaaaac aacatcgacg ttatctgttt tattaataac
    11401 agctgctttg ccttctcgca gaggattggt ctgtcctaaa tatctcttgc aaaaaaaatg
    11461 tgaattttca gggtttgttg ctttgttgcc atcggggtca atttgtatta tctgtagacc
    11521 aacgagttca tcatccagat tataaacagg ggcaaccaca taatctttat aaggtttgtt
    11581 tttatcaaac tctggaatac caatagggcc ttttaagctt cgtatctgta atttttcggc
    11641 cacgtctatc gggatttttc gagttcctac gatatacctt tcagcaggag tgccttttaa
    11701 aggaacactt cttgcccata aatcattggc taatttaatg ctttttttat cgatgacata
    11761 tttattcaac tgattaattt ctggagttgt tgtcttgccc atactgatta cctcacttaa
    11821 atgaagtga
//
LOCUS       DACVWI010000092        11657 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.092, whole genome shotgun sequence.
ACCESSION   DACVWI010000092 DACVWI010000000
VERSION     DACVWI010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11657
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.092"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            3..1793
                     /gene="dsbD"
                     /locus_tag="JBH85_09025"
     CDS             3..1793
                     /gene="dsbD"
                     /locus_tag="JBH85_09025"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HAU0946343.1"
                     /translation="MFISNCKRYRMKKWLLFSLLFLTSLCVHAEPLPASEVFKVSVKK
                     IDPNTFAIQWNILPKYFLYSDRIQLNSDNDDIAQLGTLRFPTPLTKTDKQGRTFKVYR
                     NQLTLPVGVLGITPGETIVNLRFQGCADDGFCYPPEVKQIKLAIDDKLALSQVDLETF
                     HAPEAKPLEKPEQDIADIFANHNWIMILLIFYGFGLLLSFTPCILPMVPVLSGIIVGH
                     GRTATTKKAFFLSLSYVLSMSVTYAIVGAVVALLGANLQISMQSPWAISLFSLIFVLL
                     ALSMFGFYEFKLPDAWQSKIVGSSREQRGGHYLGAAIMGCLSTLILSPCVTAPLIGVL
                     TYIAQTGNVLLGSVTLFTLSLGMGTPLLLIGTSAGKWLPETGSWMNAVKAFFGILLLA
                     VAIYLMARILPAGLVMGLWACLLIFSGIYSGALTKSNTNQEKLCQGIGIILLTYGLLI
                     LIGASMGSSNPLQPLANLQAAPTVSNAFESAKAQSVKSVELAIKQAFGKPVMLDFYAD
                     WCASCKVMENTTFKDPRVQKALSHFIVIKVDVTANNKNDRALMQHFRVVAPPTFIFFN
                     ADGVQLNNLKRVGELNADEFMQTIKSIDEN"
     gene            1883..3202
                     /gene="rimO"
                     /locus_tag="JBH85_09030"
     CDS             1883..3202
                     /gene="rimO"
                     /locus_tag="JBH85_09030"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HAU0946344.1"
                     /translation="MNHKVGFVSLGCPKALVDSERIITQLKAQGYELVPTYEDAGVVV
                     INTCGFIDSAVQESLDTIKEAMAENGRVIVTGCLGAKADVIKNACPDVLHISGAHAYE
                     EVVNAVHQHLPPPADPFTQLIPPQGIKLTPRHYAYLKISEGCNQKCTFCIIPTMRGKL
                     QSYPMAQILTEAKKLKQAGVKELLVISQDTSAYGVDTRYQQVEWQGKTVNTRFYDLCE
                     QLGELGIWVRLHYVYPYPHVDDIVPLMRDGLILPYLDIPLQHANSRILKAMKRPASSE
                     NTLLRIASWREICPDITLRSTFIVGFPGETEEEFSELLAFLKEAQLDRVGCFKYSPVE
                     GAKANDLDNPVSEDIKEERYHRFMQVQAEISRNKLKNKIGSTQTVLIDEITEDQIIAR
                     SKSDAPEIDGLVYLPKISGITVGSFAEAMITDSDDYDLYGDLEYSLA"
     gene            complement(3272..4390)
                     /locus_tag="JBH85_09035"
     CDS             complement(3272..4390)
                     /locus_tag="JBH85_09035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0946345.1"
                     /translation="MQRLWAIIRKEFLLMKRDPATIVIMAILPLILVCIAGYAINTYP
                     QKVPTVLINLDNTDVTRELVREIQNTGYFSFVASTNDSESAHHLLKTGKAILVLTIPV
                     NFTKALRRNQNPALLLEDGSIDAIASGRAIIALAGLKSSFIEKMGQKGINIPLLRPDF
                     QIINHRLYDPDRVTQFYVVPGMIGLVLMLTMLLITVVVAFRDVQGGTIEYLLASPTRP
                     SEVLLGEIFSYILIGYLQLSLGLILSYYLFHVPFIGAPLLLYLCTLPYIVAELSLGLT
                     IATFCTSQFEAVQVINVFIAFSILLTGFTFPIFGMPEWAQYLGLFLPLTHFFKIMFGI
                     MLKGNNFGEIWANLWPLLAYCLTMISLATWRFKRHFVR"
     gene            complement(4405..5346)
                     /locus_tag="JBH85_09040"
     CDS             complement(4405..5346)
                     /locus_tag="JBH85_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0946346.1"
                     /translation="MWMSIMSKWSSKQIIIDVSGLAKSFNGINAVVNLNLQIEEGTIF
                     GFLGPNGSGKTTSLRLLSGLIIPDKGQGRCLNLDLMTQTKLIQAQIGYMPQNFCLYQN
                     LTVYENLDFIARIYQLKNRKERLKEIIELLALSDNQKRITATLSGGWKQRVALAAALL
                     HKPRILLLDEPTSGIDPQSRLLIWAHIQSIVSKGVTVLLSTQHMDEAERCHQLVYMSA
                     GEIIARGSVIEIIQSTGLHSWVVKGESFSRLKDILVNNPAIQMIEKGNEMRISSIVDD
                     IHQVLDPFVLNNYEIKKTDTTLEDAFIYKIMKEGNPK"
     gene            complement(5324..5896)
                     /locus_tag="JBH85_09045"
     CDS             complement(5324..5896)
                     /locus_tag="JBH85_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HAU0946347.1"
                     /translation="MRIGIAILVVLVCCTLQGCKKEKSPYQTTSYVESQLFIVSSPDG
                     GYIKEWYADEGQLLHKEDKIVTLDGVNSIKAPADSVMTERYYLKDEYVPPNFPIASLS
                     LPSQMKILFYVPESHLEKIKLGKKIRILLNEKKYSGKISFISNQAEYTPDAIFSEKNR
                     YKLVYKVKADLSQGLRDLLKIGQPVDVNYE"
     gene            complement(5964..7232)
                     /locus_tag="JBH85_09050"
     CDS             complement(5964..7232)
                     /locus_tag="JBH85_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAU0946348.1"
                     /translation="MAIHFTFSYSVIFREFFTVMYANYYDMYQKTGIFSDEFFGQFLR
                     TLGKCYVRCADVGECYATLSKITDKDGESWYKAWYEMANTLKTKANISWEANHFITAA
                     YAYLRAAEYYRASEFFLRANPDDPRVIPCFDQLQFCFERAMHRLHPGSQKIWIPYDDQ
                     TLSGYLFFSDQSPKATLIVPGGYDSTFEENYALVPAALLHGYHILIFDGPGQGHVLRR
                     QKLYMRADFEHVVSQVVDWLDEQSELGTSSYVLIGRSFGGYLAPRAACSEKRLAALIC
                     DPGQMDIAGSLNKMLPPNLMMLLKEGKADELNACFYQLFSENPMKEFYFKSRMYTHGL
                     ATPFDYLQALSAYTFVDRVQEITCPTLVCDNPSDRISNRGNTLYEALRCEKTYVMFDA
                     KLGAGMHCEADANGQFQQVIFDWLDERFTQ"
     gene            complement(7443..10184)
                     /gene="glnE"
                     /locus_tag="JBH85_09055"
     CDS             complement(7443..10184)
                     /gene="glnE"
                     /locus_tag="JBH85_09055"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HAU0946349.1"
                     /translation="MSPQSDIETLISTKSWLIEKYVAPLHHPLRESAEKLILVSDYAC
                     RQIRLLVSLLESDSCCSLWSRESYFYAIQQISLELSQAQYMQELRRFRHTHFLRLLLL
                     EIADLASTQEVMQSWSDLADSIILHTLKYIGFTLLSRYGVPRNSEGKEIQLYALAMGK
                     LGGRELNYSSDIDLIFAFNEVGSTDGEEQITNQHYFSKMVQTFVHLLQSVTPDGFVFR
                     VDLRLRPNGDSGPLVSSFAAMETYYQEQGRDWERYAMVKARVIAESLNEPFPWFERLI
                     IPFVYRRYVDFGVIESLRGMKAMIEREVQLNPLLNDIKRGRGGIREIEFIIQNIQLIR
                     GGRLPQLQVQNAMLALAVIKKEKLLPRCDALKQAYLFLRKLENILQSLNDQQTHSLPE
                     DQLKKVQIVYAMGFTDWEQFFNKLQQYQRIVSNFFHSILGKVDDYEDEKRLLNNQLFS
                     LWQGHVESNMAVNLLISLGYENAQHCYQMLHAFRHGPRCRRLSQGARIRLDRFMVLLL
                     TELTYCPKTDEVLLQVIHLLENIVGRSAYLALLTENPHALRELLFWFVNSPFISSLFV
                     SQPFLLEILLEQEKDWHPDSLSQMEQTIVEKLEHTNDVEVHEEILRQFKLTNWMVAAR
                     AELYGLCDAVRIGKFLSDVAQVIVSQVLIIASKQLCGRHPEMAQIQSRFAIIAYGKLG
                     SREMSYASDLDLVFLHSAKPSEEALVTRLTQKILHMLTTRTQMGVLYHVDTRLRPSGA
                     AGLLVSHVDAFVEYQKSQAWTWEHQALLKARILSGNSKIKNQFSQLKKSVLLLERDSK
                     LLQRDVLTMRSKIDQFQESDEVKLARGGLLDLEFLVQFLILNLRDPKFSSYTNTLSQL
                     KHLFLSNVLTKSQFTTLKKAYQYFHYLMHQKIVQPDVINDDEMQNAVSSVCKDLYRY"
     gene            10310..11074
                     /locus_tag="JBH85_09060"
     CDS             10310..11074
                     /locus_tag="JBH85_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HAU0946350.1"
                     /translation="MKIPMKFIQGLLLSFFFLVSPLHAQNEPIPLIIGVGGFYPPFIM
                     QGTNNELFGYDIATMTELCKIMKRQCNFRVMRFRQLIPALINKQIDAAISAMSITSER
                     SNLVNFSMPYLLSYSRFLTNEVHNTHQPFNLMLLKGKRIGVEQNTVFSQEIRRMGIID
                     PVIVEFDRTEEMLEALSANKIDFVLMDNPAALYWSANSSGRLLVIGSPMLIGYGLGIA
                     VNRENSVLLKSLNDALVEYQRSDKYKENYNKYMMNF"
     gene            complement(11318..11584)
                     /locus_tag="JBH85_09065"
     CDS             complement(11318..11584)
                     /locus_tag="JBH85_09065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946351.1"
                     /translation="MSQNWPTRDKDLQTARVIMEEYANERDSDSLGLFEIVVDQNEKR
                     MNFRLSGWVVILAKHFTSLYGVSQGDYVTRQVISRCITQGQTLH"
BASE COUNT         3690 a         2408 c         2083 g         3476 t
ORIGIN      
        1 taatgtttat tagtaactgt aaaagatatc gaatgaaaaa gtggctctta ttttccctat
       61 tatttttaac ttccctttgt gttcatgctg agcccttacc agcttctgaa gtatttaagg
      121 ttagtgtaaa aaaaatagac cccaatacct ttgccataca atggaatatc ttgcccaagt
      181 attttttata tagcgaccgt attcaattaa attccgataa tgatgacatt gcacagcttg
      241 gaactcttcg cttccccacc cccttaacca aaacggataa acaagggcga acctttaaag
      301 tttaccgcaa tcagcttacc cttccagtgg gggtcctggg cattacccca ggagaaacaa
      361 tagtcaattt gcgttttcaa ggatgtgctg acgatggttt ttgttatccc cccgaagtaa
      421 aacaaatcaa actggcaatt gacgataaac tggctctttc tcaagttgat ttggaaacat
      481 tccatgcacc tgaagcaaaa cctcttgaaa aacctgaaca agacatcgct gatatttttg
      541 caaatcataa ttggataatg attctgctta tattttacgg gtttggcctg ctcctgtcct
      601 tcacgccttg tatactgcct atggttcctg tcctttcagg tattattgtt ggccatggga
      661 gaacggcaac aacgaaaaaa gcgtttttcc tgtcattaag ctacgttctt agcatgtctg
      721 tcacttatgc tattgtgggt gctgtcgttg ccttgcttgg agccaattta caaatcagta
      781 tgcagtcacc ttgggctatc agtctattca gtctgatatt cgttttgctg gccttgtcca
      841 tgtttggctt ttatgaattc aaactaccag atgcatggca aagcaaaatt gtaggttcaa
      901 gtcgtgaaca acgtggcgga cactatcttg gggcagccat catgggatgt ttgtccacac
      961 tcattctgtc accatgcgtt acagcaccac taattggagt attaacctac atagcacaaa
     1021 ccggaaacgt attactcggc agtgttactc tatttacatt aagcctaggc atgggtactc
     1081 cattactgct gataggaact tctgctggta aatggctacc cgaaacagga agctggatga
     1141 atgctgttaa agctttcttt ggcatattac ttcttgctgt tgccatctat ctgatggcac
     1201 gcattttacc agcaggtctg gtcatggggc tatgggcttg tctcctgatt ttttccggca
     1261 tttactcagg tgccttaacc aaatcaaata caaaccagga aaagctctgc caaggcattg
     1321 gtatcatttt attaacctat ggattgctga ttctcattgg ggctagcatg ggctcttcca
     1381 accctttgca gcctttagcc aacttacaag cagcccctac tgtaagcaat gcttttgaat
     1441 cagctaaagc ccaatctgtt aaaagtgttg aactggctat aaaacaagcg tttggaaaac
     1501 cagtgatgct tgatttttat gctgactggt gtgcatcatg taaagtgatg gaaaacacca
     1561 cgttcaaaga tcctcgtgta caaaaagctt tgagccattt tatcgttatc aaagtggatg
     1621 taactgccaa taataaaaat gacagagcat taatgcagca tttccgtgta gtagcccccc
     1681 cgacttttat cttttttaat gctgatggcg tacaactcaa taatttgaaa agagttggtg
     1741 aattgaacgc cgatgaattc atgcaaacaa taaaaagcat tgatgagaac taaaataact
     1801 acgggcactt ttgtatgaaa tcagtcgaca ctcgaacgat taagcagtat aattagctca
     1861 ttttttttac agatagaagt ttatgaatca taaagtagga tttgtaagtt taggatgccc
     1921 caaagcactg gtcgattcag agcgaatcat tactcagctt aaagcacaag gctatgaatt
     1981 ggttcccact tatgaggatg ctggagtcgt cgtaattaat acgtgcggct tcattgacag
     2041 cgctgtccag gaatcactgg atacaattaa agaagcgatg gctgaaaacg ggcgagtaat
     2101 cgttacaggt tgtttaggag ctaaagcgga cgtaattaaa aatgcctgtc ctgatgtcct
     2161 gcatatcagt ggtgctcatg cctacgaaga agtagtcaat gcggtacacc aacacttgcc
     2221 gcctcctgca gacccattta cacaactgat tcccccacag ggaataaaac ttacacctcg
     2281 gcattatgct tatttaaaaa tatcagaagg atgcaaccaa aaatgcactt tttgcattat
     2341 ccctacgatg agaggaaaat tgcaaagcta tccaatggcc caaattctta ctgaagctaa
     2401 gaaattaaaa caagccggag ttaaagaatt gctggttatc tcacaagaca ccagcgctta
     2461 tggcgtggat acacgttatc agcaggtcga atggcaagga aaaacagtca atacccgttt
     2521 ttacgatcta tgcgaacaat taggcgaatt aggaatttgg gtgagactcc attatgtcta
     2581 tccctatccc catgttgatg atattgttcc tctaatgcgc gatggcctga ttttgcctta
     2641 cctggatata ccattgcaac atgccaattc acgcatatta aaagcaatga aaagacccgc
     2701 cagcagtgaa aataccttat tgcggattgc ttcatggaga gaaatttgcc ctgacattac
     2761 gttacgctcc acattcattg taggtttccc tggtgaaaca gaagaggagt tttccgaatt
     2821 actagccttc cttaaagagg cacaactaga cagagtcggt tgtttcaaat actcccctgt
     2881 tgaaggagcc aaagcaaatg atttggataa tcctgtatcg gaggatatta aagaagagcg
     2941 ttatcatcgt tttatgcaag tacaagcaga aattagccgt aataaattaa aaaataaaat
     3001 tggcagtact caaactgttt taattgatga gataaccgaa gatcaaatca tagctcgtag
     3061 taaaagcgat gctcctgaaa tcgatggtct tgtttatttg ccaaaaatat ccgggattac
     3121 tgttgggtct ttcgcagaag caatgataac cgacagtgac gactatgatt tgtatggtga
     3181 tttggaatac tctcttgcat gaaagaaatg gcattaaaac agtacttttt ctgctcacct
     3241 tcattggcaa gagagagaat atttattgta tctagcgtac aaaatgcctt ttaaatcgcc
     3301 atgtcgctaa agaaatcatg gtaaggcaat acgcaagtag tggccataaa ttagcccaaa
     3361 tttcaccaaa attatttcct tttagcataa tgccaaacat aatcttaaaa aaatgcgtca
     3421 atggcaaaaa taatcctaaa tattgcgccc attcaggcat tccaaatatc ggaaaagtaa
     3481 atccagttaa cagaatagaa aaagcaatga aaacattgat cacttgcact gcttcaaact
     3541 gagatgtaca aaaagtggct atagttaaac ccaacgataa ttccgccaca atataaggta
     3601 aggtgcataa atataaaaga agaggggcgc caataaacgg aacgtggaat aagtagtaag
     3661 acaagataag acccaaactt aattgtaaat aaccaatgag gatataagaa aaaatttcgc
     3721 ctaataaaac ttctgatggg cgggtcggtg aggctaataa atattcaatc gtaccaccct
     3781 gaacgtctct aaatgccaca accacggtta tcagcagcat cgttaacatg agcaccaagc
     3841 ctatcatccc gggaaccaca taaaattgag ttacgcgatc cggatcatat aatcggtggt
     3901 ttatgatttg aaaatcaggc ctcagcaagg gaatattaat acccttttga cccattttct
     3961 ctataaatga tgatttcaat cccgccaaag caatgatagc tctacctgaa gcaatagcat
     4021 ctatactgcc atcttccaat aaaagagctg gattttggtt tcgacgaagt gctttggtaa
     4081 agttcacagg aatagtcaat accaggatag ccttgcctgt cttcaataaa tgatgggctg
     4141 attctgaatc gttcgtcgaa gccacaaatg aaaaataccc ggtattttgt atctctcgaa
     4201 ccagttcacg tgttacatca gtattatcca aattgattaa caccgtagga actttttgag
     4261 gataggtgtt tatggcatac ccggctatac aaactaaaat caaaggtaag attgccataa
     4321 tcacgatagt agcaggatca cgtttcatca ataggaattc tttgcggatg atagcccaca
     4381 aacgttgcat tgaaaaatga ctcttcactt tggattccct tctttcataa ttttataaat
     4441 gaaagcgtct tctaaagtag tatctgtttt tttgatttca taattgttca acacgaaagg
     4501 atccaatact tgatgtatat catcaactat tgagctgatg cgcatttcat tacccttttc
     4561 aatcatttga atagcggggt tatttactaa tatgtccttt aatctggaga aactctcacc
     4621 tttaacaacc caggagtgca aacctgtcga ttgaataatt tcaatcactg agccacgtgc
     4681 tatgatttct ccggcggaca tataaaccaa ttgatgacat ctttctgcct catccatatg
     4741 ctgtgtgctg agtaaaacag taactccttt ggatactatg ctttgtatat gagcccaaat
     4801 taacaaacgc gattgaggat caatgcctga agttggctcg tctaacaaaa gtatacgagg
     4861 cttatgcaac aaagcagccg ctaaagccac ccgctgcttc caacctcctg ataaagtagc
     4921 agtaatccgt ttttggttgt cacttaaggc cagtaattca atgatttcct tcagtctctc
     4981 tttcctgttt tttaattggt atattcttgc gataaaatcc agattttcat aaacagtcag
     5041 attttgatag aggcaaaaat tttgtggcat atagccaatt tgagcctgta tcaacttggt
     5101 ttgggtcatt aaatcgagat tcagacatct accctggcct ttatcgggaa ttattaatcc
     5161 acttaataat cgtaaactgg tcgttttacc actaccgttt ggccctaaaa aaccaaaaat
     5221 tgttccttcc tcgatttgca aattcaagtt cactactgcg ttgataccat taaatgattt
     5281 tgctaatccg gacacatcga taataatttg ctttgagctc catttactca taattgacat
     5341 ccacaggctg acctattttt aataaatccc ttaatccctg agatagatcc gcctttactt
     5401 tgtatactaa tttataacga tttttttcac taaaaatagc atcaggagta tattcagcct
     5461 gattggatat aaagcttatt ttgcctgaat attttttttc attaagcaaa attcgaattt
     5521 ttttacctaa tttaattttt tccaaatggc tttcgggaac ataaaacagg attttcattt
     5581 gagaaggcag agagagactc gcaataggga aattaggagg tacgtactca tcctttaaat
     5641 aataacgttc agtcataaca gagtctgcgg gcgctttgat tgaatttacc ccatcaaggg
     5701 ttacaatttt atcctcttta tgcagtaatt gaccttcatc agcataccat tcttttatgt
     5761 atccaccatc cgggcttgac acaataaata actgagattc aacatagctt gtcgtttgat
     5821 atggtgattt ttctttttta caaccttgca atgtgcaaca aactaataca accaggattg
     5881 caatccctat tctcatacct cttatccttt tgtcatcagt attagttatc ctatcagcaa
     5941 agcaataacg attgggacat ccactattgg gtaaatctct catccagcca atcaaaaata
     6001 acttgctgaa actgaccatt agcatctgct tcacaatgca tacctgcccc cagtttggca
     6061 tcaaacatca cataggtttt ttcacaacgc aaagcttcat atagcgtatt cccacgattg
     6121 gatatcctgt cgcttggatt atcgcagacc agtgtgggac aagtgatctc ttgcacccta
     6181 tcaacaaagg tgtatgcaga taatgcctgc aaatagtcaa aaggagtagc caaaccgtgt
     6241 gtatacattc ttgatttgaa ataaaattct ttcattggat tttctgagaa caattgataa
     6301 aaacaggcat taagttcatc agcttttcct tcttttaata acatcataag gtttggaggt
     6361 agcattttat tgagtgagcc tgcaatatcc atctgtcctg gatcacaaat taatgcagct
     6421 aatcgttttt cactgcaggc cgcccttggt gcaagataac cgccaaaact tctgccaatg
     6481 agcacataac tggaagtccc cagttcactt tgttcatcta accaatccac aacctgagag
     6541 acaacatgtt cgaaatcagc tctcatatac agcttttgtc gacgcaaaac atgcccttgt
     6601 cccgggccat caaaaatcaa aatatgatac ccatgtaaaa gcgcagcagg aacgagagca
     6661 taattttctt caaaggtact gtcatatcct ccaggtacta tcaaagttgc tttgggagat
     6721 tgatcgctga aaaataaata accgcttaat gtttgatcat cataggggat ccatattttt
     6781 tgagatccag gatgcaatcg atgcattgct cgttcaaaac aaaattgcaa ttgatcaaaa
     6841 caaggaatca cacgcggatc atcaggattg gcacgtaaaa aaaactcgct tgcccggtaa
     6901 tattctgcag cacgcagata agcgtatgct gctgttataa aatgattggc ttcccaactg
     6961 atattggctt tggttttaag tgtgtttgcc atctcatacc atgccttata ccaactttcc
     7021 ccgtctttat cagtgatttt ggacagggtt gcataacatt caccaacatc agcacaccgc
     7081 acataacact taccaagagt tcttaaaaac tgcccaaaaa actcatcact gaaaatccct
     7141 gttttttgat acatatcata ataattagca tacataacag taaaaaattc cctaaaaatt
     7201 acagagtaac tgaaagtaaa atggattgcc atgtgccaga gtatattacg cgcaggccta
     7261 tgaattatcc taaatgatat taggacagac ttacgaaaac cccaaggtca aggcaaaaaa
     7321 tgtttttaat gagggagttt agataaacta aatgaccgaa ttaaaaacat tttttaacga
     7381 cgagattggg gggttgcaag tctgtaggat tcattttcag gggagtgctg tctaaacaca
     7441 atctaatacc gataaagatc tttgcaaact gaagacactg cgttttgcat ttcgtcatca
     7501 ttaataacat ctggctgtac aattttctga tgcatcaaat aatgaaaata ctgataagct
     7561 ttctttaaag ttgtgaattg agatttcgtt aatacattcg ataaaaacaa atgcttaagt
     7621 tggcttagtg tattggtata acttgaaaac ttgggatccc taagattcaa tataagaaat
     7681 tgaaccaaaa attccaaatc caataatccg cctcgagcta gctttacttc atctgactct
     7741 tgaaattgat cgattttaga tcgcatggtt aatacgtccc tttgcaataa tttactatct
     7801 ctctctagca acaggactga tttttttagt tgggaaaact gatttttgat ttttgaattt
     7861 cccgataata tcctcgcctt taacaaagct tgatgttccc atgtccaagc ttgtgatttt
     7921 tgatactcaa caaaagcatc cacatgactg actaacaagc ctgcagcacc ggagggtctt
     7981 aaacgagtat caacgtgata caaaaccccc atttgagtac gagtagtcag catatgtaat
     8041 attttttgtg ttaatcgggt cactaaagct tcttcagatg gtttggcaga atgtaaaaaa
     8101 accaaatcga gatcagaagc ataactcatc tctcgactgc ccagttttcc ataagcaata
     8161 atagcaaatc gtgattgaat ttgagccatt tcagggtgac ggccacataa ctgtttgctt
     8221 gcaataatta aaacttgact gacaatgact tgcgccacat cagacagaaa tttccctatg
     8281 cgcacagcgt cacataatcc atacaattcc gctctggcag ccaccatcca attcgttaat
     8341 ttaaactgac gcaggatttc ctcatgcact tccacatcat tagtatgctc taatttttca
     8401 actattgtct gttccatttg ggataatgaa tcaggatgcc aatccttttc ctgctccaac
     8461 aagatttcca acaaaaaagg ttggctaaca aacagggaag aaataaaagg actattcaca
     8521 aaccaaaata ataattctct tagcgcatgg gggttttcag tgagtaaagc caggtaagca
     8581 cttcgcccca caatattttc aagcaaatga attacttgta ataaaacctc atccgtttta
     8641 gggcagtaag tcaattctgt aagcaataaa accataaaac gatcaaggcg aatgcgagcg
     8701 ccctgtgata atcttctgca ccgtggtcca tgtcgaaaag catggagcat ttgataacaa
     8761 tgttgtgcat tttcataccc taaactaatc aataaattca ctgccatatt actttcaaca
     8821 tgaccttgcc aaaggctaaa taattgattg tttaacaatc tcttttcgtc ttcataatca
     8881 tcaaccttgc caagaatgga atgaaagaaa ttactaacaa ttcgttgata ttgttgtaat
     8941 ttattgaaaa attgttccca atcagtgaat cccatggcat aaactatctg cacttttttt
     9001 aactggtctt caggtagaga atgggtttgt tgatcgttca aactctgtag aatattttcc
     9061 aatttcctca aaaaaagata cgcttgtttt aaagcatcac acctgggtag taatttttcc
     9121 ttttttatca cagccagcgc taacatggca ttttgaactt gcaattgagg taatctgcct
     9181 ccgcgaatta attgaatatt ctgaataata aattctattt ccctaatacc accccggcct
     9241 cgtttaatat cattcaataa ggggttaagt tgcacctcac gctcgatcat tgccttcatc
     9301 cctcgcaggg attctatcac tccaaagtcc acatacctcc tgtaaacaaa cgggatgatt
     9361 aaacgctcaa accatggaaa tggttcattc aaagactcag caataacccg cgctttaacc
     9421 atagcataac gttcccaatc acgcccctgt tcctggtaat aggtttccat agctgcaaaa
     9481 ctggaaacca aaggaccact atctccatta ggtcgtaatc ttaaatccac tctaaataca
     9541 aaaccatcag gcgttacact ctgtaataaa tgaacaaatg tttgcaccat cttgctaaaa
     9601 taatgctgat tggtaatctg ctcctcacca tcagtgctgc caacttcatt gaaggcgaaa
     9661 atcaaatcaa tatcggacga ataattaagt tctcttcccc caagtttccc catggcgaga
     9721 gcatacaatt gaatctcttt accctcactg tttctgggaa ccccgtaacg actcaacaag
     9781 gtaaatccaa tatattttaa agtatgcaag atgatagagt ctgccagatc agaccaggat
     9841 tgcataacct cttgagtaga agccaaatcg gctatttcaa gtaataacaa ccgcaaaaaa
     9901 tgggtatgac gaaaccgacg caattcctgc atatactggg cttgagataa ttccaggctg
     9961 atttgctgaa tggcataaaa atagctttcg cgagaccata aggaacagca ggaatcactt
    10021 tctaaaagag agaccaataa tctaatttgt ctgcaggcat agtcacttac caatatcaac
    10081 ttttcggcac tttctctcaa tggatggtgc aaaggagcaa cgtacttttc aatcaaccag
    10141 gattttgtag aaatcaatgt ttcaatatcg ctttgtggag acataaaata tactattctt
    10201 aatataaaaa cctcaacata tcataggatt aatcaattaa ttttacattt aatactttaa
    10261 aactcctatt ggacgttata ctcttataaa agactctaat aatattttag tgaagatacc
    10321 aatgaaattt attcagggat tattgctttc tttctttttt ctagtttcac ctctccacgc
    10381 tcaaaacgag cctatacctt taataatagg tgtaggaggc ttttaccccc cctttattat
    10441 gcaaggaacc aataatgagc tttttggcta tgatatcgcc accatgacag aactgtgtaa
    10501 gataatgaaa cgccaatgta attttcgagt catgagattc agacaattaa ttcctgctct
    10561 gattaacaaa caaattgatg cggcgatcag cgccatgtct attacttcag aacgttcaaa
    10621 cctggttaat tttagcatgc cctatttatt gagttactcc aggtttctta caaatgaggt
    10681 acacaatact catcaaccgt ttaatttaat gctcttaaaa ggtaaacgaa ttggagtgga
    10741 acaaaatact gtctttagtc aggaaatcag aaggatgggg ataatagacc ctgtcatagt
    10801 ggaatttgac agaactgaag aaatgcttga ggcgttgagc gcaaataaaa ttgactttgt
    10861 tctgatggat aatcctgccg ctttatactg gtctgctaat tcgtcgggga gacttctggt
    10921 aataggcagt cccatgttga ttggttatgg tttgggaatt gcagtcaatc gggaaaactc
    10981 cgtattactc aaatctctaa atgatgcctt ggtagaatac cagcgttctg acaaatacaa
    11041 ggaaaattac aataaataca tgatgaattt ttaagagtga tatggttaca aaaattgctc
    11101 ttaatcactc atcaatagct gaataaccgt tttaaggcgt aataagtcag cgccctgata
    11161 tttaactatc ctgtaagggc cggatctgag tccaggttgg atgaaaataa tcatgaaaaa
    11221 gcacagcata gatgactatg tgagcatttc gaaggattat tttctttcaa tataaaccca
    11281 atacggccat tccaattgaa tggctcatct ctagctttta atgcagagtt tgaccttgag
    11341 taatgcagcg actaatcacc tgcctggtaa cgtaatcacc ctgactaact ccatataaag
    11401 aagtaaaatg ttttgccaaa ataactaccc aaccagataa acggaaattc atgcgttttt
    11461 cattttgatc aacgacaatc tcgaaaagac ctaatgaatc actatcacgt tcattagcat
    11521 actcttccat tatgactcgc gccgtttgca aatctttatc tctggtaggc caattttgac
    11581 tcataagaca ctccctaaaa acatgagcaa gactgttgtt acttctacaa catggaggca
    11641 attttcaaaa ttgcaag
//
LOCUS       DACVWI010000093        11554 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.093, whole genome shotgun sequence.
ACCESSION   DACVWI010000093 DACVWI010000000
VERSION     DACVWI010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11554
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.093"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            23..1054
                     /gene="ruvB"
                     /locus_tag="JBH85_09070"
     CDS             23..1054
                     /gene="ruvB"
                     /locus_tag="JBH85_09070"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HAU0946352.1"
                     /translation="MNPIKPLMLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSV
                     SSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMGVNIRQTSGPVIERAG
                     DIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELP
                     PFTLIGATTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHLLGVPTKPEGARE
                     IALRSRGTPRIANRLLRRVRDYSEVKGNGIITVDMAQQALEMLEVDQHGFDLMDRKLL
                     LAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIATSKAYQH
                     FGFSAIEQE"
     gene            1058..1453
                     /gene="ybgC"
                     /locus_tag="JBH85_09075"
     CDS             1058..1453
                     /gene="ybgC"
                     /locus_tag="JBH85_09075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HAU0946353.1"
                     /translation="MNLISNHQHNIRVYAEDVDYMGIVYHANYLCYLERARTELLRQN
                     NLILSEFEKSDILFAIHELTINYVFPARLDDQLTIKTEIKEFRACSFLFNQEISNQHK
                     QLICRASVQVVCVGSNLKPKRLPNIMRNE"
     gene            1466..2155
                     /gene="tolQ"
                     /locus_tag="JBH85_09080"
     CDS             1466..2155
                     /gene="tolQ"
                     /locus_tag="JBH85_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HAU0946354.1"
                     /translation="MWRLMVANQANVLMYFMQAGLVVKSVMLILLIASIISWTLIFQR
                     AWFFNRRKQMTETFTRRFWDCGDLSKLYADVDSNSDERQGVAAIFHAGFKEFVRCRKQ
                     GKVSIEPIQRVMQISHAKEAEKLEQHLPFFASVGSISPYVGLFGTVWGIMTSFQALGH
                     AQQATIAMVAPGISEALVATALGLFTAIPAVIAYNRYTTRANTLLNKYDLFQEELISL
                     IEQQTSGSPRG"
     gene            2164..2619
                     /gene="tolR"
                     /locus_tag="JBH85_09085"
     CDS             2164..2619
                     /gene="tolR"
                     /locus_tag="JBH85_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolR"
                     /protein_id="HAU0946355.1"
                     /translation="MNRSKTNRERPISEINVVPYIDVMLVLLVIFMITAPMLTQGVTV
                     DLPKAASQTLQAADREPIIVSVNQLGSYFLNISSTPAEPIEAQALLVRVAAELELAKQ
                     SGQKLNVLVKGDQGVAYGKVVQAMALLKQAGAEQVGLLTDSQTGDEGQA"
     gene            2616..3614
                     /gene="tolA"
                     /locus_tag="JBH85_09090"
     CDS             2616..3614
                     /gene="tolA"
                     /locus_tag="JBH85_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HAU0946356.1"
                     /translation="MISDLTYRKAFLFAVTLHLFLLVLLFTDNSSKKPVLTIESKNSP
                     GMMQPTASQQEVVKAVSVDNKEIMKTVNRLKQEREQQKKAELNRQKELLRQAEAAKQQ
                     RIKEQQEIARLKEEANKIAIARKKQVEEEKKRLKELAEQKALEAKRIEELKKQNEKLA
                     KQRELEAKKLAELNKKKQEEKEKAEKLKAEQAKAEKLKAEKARAEQEKAEMERKRQAE
                     AAAAQQAAQNAERQARIAGEVDKYKALIVNAIGRNWILPENVDSSLSSQFRIRLAPDG
                     TVLEVSLIRSSGDPLLDRSAQTAIYKASPLPVPQDVETFNLFRDISLTVRPEQVRG"
     gene            3620..4879
                     /gene="tolB"
                     /locus_tag="JBH85_09095"
     CDS             3620..4879
                     /gene="tolB"
                     /locus_tag="JBH85_09095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system beta propeller repeat protein
                     TolB"
                     /protein_id="HAU0946357.1"
                     /translation="MFNRIISLFLLLFTGQVIALDLELTQGINSALPIAINSFGSNAA
                     AQEIGNVIENDLTISGQFKIISGPQGANSQSSVSTLRQLGADSVVTGRVNQVGNRIEV
                     SFTLADAVANGNILLTKTFQINANQVRALAHHISDEVYQKLTGERGIFSTRIAYISVQ
                     RNGGRSRYSLEVADADGHNPQSLLVSSEPIMSPSWSPNGKSISYVSFEKKKAEIFTVS
                     VETGQRRLITSFPGINGAPAWSPDGQHLAVVLSKSGTPKIYDVDLSSGSMKQLTFGNS
                     IDTEPRYSPDGRSLLFTSGRGGSPQVYRLSLADGQISRVTFEGNYNARASYTPDMKHI
                     VMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYATRYQDRGVLGIV
                     SIDGRIRMRLPAREGDVQEPAWSPYLS"
     gene            4858..5715
                     /locus_tag="JBH85_09100"
     CDS             4858..5715
                     /locus_tag="JBH85_09100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HAU0946358.1"
                     /translation="MVPLPELRMIRSILVLFFLFIANAGYAWNAIGHQLVAQIAYDNL
                     TPQSRRMCDLYSHSKSKTSSNVNFVKSASWLDSIRAHDVHWFDALHYIDIPFSMDETE
                     LPVLTDINALWGINQAIAVLSSKKASIADKKLSLRILVHLVGDIHQPLHTVTKISKKL
                     PKGDLGGNLFQLAKNPIGNNLHQYWDNGGGILIGQDKFFQIKNKARQLEKKWSCQSAS
                     KEKNPQQWINASHQLALTKVYKVSAHQVPGKQYQLNTQNITEKQILLAGCRLAYLLNN
                     IAEGKNKLI"
     gene            complement(5744..6883)
                     /locus_tag="JBH85_09105"
     CDS             complement(5744..6883)
                     /locus_tag="JBH85_09105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HAU0946359.1"
                     /translation="MNHIMNKSNLAMNKLTRYSQQIKMEEIGLDGQEKLKNSRVLCIG
                     LGGLGSPLLLYLAAAGVGVLGIVDDDIIELSNLHRQILYNHTHINKKKAVTAKKQLLA
                     INPLIQVESYSSRLTEENAAELITQYDIIADGTDNFYTRYLIHSICFELEKPYVYASA
                     SGFQGYCSIFHGKQDPCLHCIFPVSVSDINIPNCEGAGVIGTLPGMLGIIQATEIIKW
                     ILQIGNPLKKRLLTINLLTMTFKNIIISRNPDCEFCIQNQSIRQLINPVNCSAQIEPC
                     HHRITLDEFYQLFTNNKNIHLIDVRSTKEHQIQNIGGIVLPLDELPQRLHELNPNRLI
                     ILYCQSGTRSKMALDILLKAGFASVKYIENGLKGVTDNYNKDMPQ"
     gene            complement(6864..8351)
                     /gene="thiD"
                     /locus_tag="JBH85_09110"
     CDS             complement(6864..8351)
                     /gene="thiD"
                     /locus_tag="JBH85_09110"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HAU0946360.1"
                     /translation="MASGKQFMKKPIVWTIAGVDSSGLAGVHADMETFSRLNVRACSV
                     ITAVTAQNAHSIIAVEEISRDQVAAQCRALELNLKPDAIKIGMLCSTPICEEIAYFLK
                     GYEGFVVLDPIITSSSGTNLFFPDLQQHKNNLIQLFPYITIITPNRIEAEIILNRSIY
                     SYQDIINAASDLLSLGAKQVLLKGGHVKDNSFSQDYWTDGKESFWIANRRFPETNYRG
                     TGCVLSSALTACLALGYSIKDAIVIAKMYVNRGIRQSIEIDKDASQLYHDGWPEDEAD
                     LPYLSPTPFIKPVPSFKKYSMGFYPIVDSSHWLEMLLPLGIKCIQLRIKEASQERLEE
                     EIKRSVHLANQYNAALFINDHWELAIHYGAAGVHLGQEDLEKADVDRINRSGLFLGIS
                     THCYYEVARAHALNPSYVACGPIYETTSKIMPFQAQGIARLERWRKTLRYPLVAIGGI
                     TLKNLSDVLKTKIDGVSVISAITKASAPLVAAKQFLTQMNESHNE"
     gene            complement(8327..9118)
                     /locus_tag="JBH85_09115"
     CDS             complement(8327..9118)
                     /locus_tag="JBH85_09115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HAU0946361.1"
                     /translation="MMWNLAGKKLSSRLILGTACYPSLEHMQQAIHNSGTEVITISIK
                     RQTSAGLDGESFWQAVKKLDCHLLPNTAGCRNAEAAINTAEIARELFNTQWIKLEVIG
                     DDYNLQPEPFELIKAARILIDRGFEVFPYCTDDLVLCQKLVDAGCKILMPWGAPIGSG
                     KGLINPYALETLRYRFPDITLIIDAGIGKPSHAVQVMELGFDGVLLNTAVALANHPAL
                     MATAFRHAVIAGHQAFTGGMMSERNVAHPSTPLIDTPFWHQVNNL"
     gene            complement(9118..9321)
                     /gene="thiS"
                     /locus_tag="JBH85_09120"
     CDS             complement(9118..9321)
                     /gene="thiS"
                     /locus_tag="JBH85_09120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HAU0946362.1"
                     /translation="MINVYFNDKIYNIQPSLSLSAFLKQLNYTQQHFAVAINNHHVPH
                     KAYETTILQANDCIDILFPMQGG"
     gene            complement(9314..10384)
                     /locus_tag="JBH85_09125"
     CDS             complement(9314..10384)
                     /locus_tag="JBH85_09125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAU0946363.1"
                     /translation="MRAGIVGSGIMGRLLAFVLHNAGWQVSLFDRSNESMNCSTAAAG
                     LLTPFSELDKSILLISTLGQESIKNCWPRIIEDLPESVYFQQSGSLVLCHPGDQAEWI
                     HFSRRILSQLNPSNSVFQKLSHENLIALEPELTKFETAYYFPNEAHIDCQTLMLSLKN
                     YLDSVCIPHITNTPVLSLKPGEINTKEQRYHFDVVFDCRGLGAQNVFSDLRGIRGELI
                     WLHAPGVQLHRPIRLLHPRYSLYLVPRPGNFYLIGASEIEAEDFSPVSVRTALELLTA
                     VYYLHRNFDEARIIKTVTHCRPTLVNHLPRIKFADGLIAVNGLYRHGYLIAPALAEEI
                     LRGVTSNFRHLNYPELWENYCD"
     gene            complement(10387..11337)
                     /locus_tag="JBH85_09130"
     CDS             complement(10387..11337)
                     /locus_tag="JBH85_09130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein"
                     /protein_id="HAU0946364.1"
                     /translation="MAMSSLKSRVTLLLNWYTNPYHTPILVAQQLGFYSEEDIKLAIL
                     EPADPSDVTEIVGLGTVDFGVKAMIHTVAAKAKGYPVTSIGTLLDEPPTGLIALKSSG
                     INSFQDIVGKRVGYIGEFGKKIIDDLASLAGIDPTSYKTVRIGMNVTDAIYRDVIDTG
                     IGFINFQKVELEHLCGETVFLRIDQLAGLGCCCFCSIQFIVPEITLQQPELVKGFLRA
                     TQRGAAYTTEKPEEAYELLCQAKPQLRTPLYQKIFTRTLPFFSRTLINVDRDWDKVGR
                     YTKHLKIIDEHFDISQCYTNRFLPDTPYSDLKPIACCLEN"
     regulatory      complement(11405..11498)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
BASE COUNT         3635 a         2203 c         2350 g         3366 t
ORIGIN      
        1 atgttaaaat gctttcattc gaatgaaccc gataaaacct cttatgctcg aaagtgatcg
       61 cctaataagt agtcaaagta ttgtctcgga agacgcaatg gatagagcca tcaggccgct
      121 tagcttgagc gagtacgtag ggcaagattc tgttagctca cagatgcaga tatttatcaa
      181 tgcggcaaga aagagaaacg atcctttgga tcatgttctt atttttggcc cacctggcct
      241 tggtaaaact acccttgcaa atatcatagc tcacgaaatg ggagtgaata tcagacaaac
      301 ttctgggcca gtgattgagc gtgctggcga tattgctgct atattgacga atctacaaca
      361 aaatgatgta ctatttattg atgaaattca tagattaagt cctgttatag aagaaattct
      421 ttatccagcc atggaagatt ataagttgga tatcatgata ggagaggggc cagcagcacg
      481 atccattaaa ttggagttac ctccctttac attaattgga gcaacgacaa gagcagggtt
      541 gcttacctcg ccattaaggg atagatttgg tatagtgcaa cgtttggaat attattctgt
      601 tgattcgctt acccagattg tggcacgctc cgcgcatttg cttggtgtcc ctacaaaacc
      661 cgaaggagcc agagaaattg cattacgctc cagaggaaca ccacgaatag ccaatcgcct
      721 gttaagaaga gtcagggatt attctgaagt gaaaggaaat ggcatcatta ctgttgatat
      781 ggctcaacaa gcattggaaa tgcttgaagt ggatcagcac gggtttgatt taatggatag
      841 aaaattattg ttagcggtga tagaacactt caatggtggt ccagtaggca tagatagtat
      901 tgcagctgct attggcgaag aaaaagggac tatagaagat gttttggagc catttttaat
      961 acaacaaggc tttctaatgc gcactcctcg cggtagaata gccacttcga aagcttatca
     1021 gcattttggc tttagtgcga tcgaacagga ataacacatg aatcttatat caaatcatca
     1081 gcataacatt agagtctatg cagaagatgt tgattatatg ggaattgttt atcatgctaa
     1141 ctacctttgt tatttggaaa gagctcgaac tgaattatta aggcaaaaca atttaattct
     1201 aagtgaattc gaaaaatccg atattttatt tgcgattcac gaactcacaa ttaattatgt
     1261 atttccggcc aggttagatg atcaattaac aattaaaaca gaaattaaag aatttagagc
     1321 gtgcagtttt ctatttaatc aagagatatc taatcaacat aaacaattaa tttgcagggc
     1381 cagtgttcaa gtagtttgcg ttggcagtaa tttaaagccc aaacgactac ctaatattat
     1441 gagaaatgaa taacgaaacc tttcagtgtg gagattaatg gtggctaatc aagcaaatgt
     1501 actaatgtat tttatgcaag cgggtttggt agtaaagtcc gttatgttga tattattaat
     1561 tgcttcgata atttcatgga cattaatctt tcaaagagca tggttcttta atcgtagaaa
     1621 gcaaatgact gaaaccttta ccagaaggtt ctgggattgt ggagatttga gcaaactcta
     1681 tgctgatgta gacagtaata gtgatgaaag acaaggggtg gccgctatct ttcacgctgg
     1741 ttttaaagag tttgttcgct gcagaaaaca aggcaaagta tctattgagc ctatacaaag
     1801 agtaatgcag ataagtcatg ccaaagaagc ggaaaaactg gagcaacatt taccattttt
     1861 tgcatctgta gggtctattt ctccctatgt gggtctattt ggtacagttt ggggtataat
     1921 gacatcattt caggctttgg gacatgccca acaagccact atcgcaatgg tggcaccagg
     1981 tatttcagaa gcgctggttg ctaccgcttt agggctattt actgcaattc ctgcggttat
     2041 tgcctacaac cgatatacga cacgtgccaa tactttgctg aataaatatg atttatttca
     2101 agaagaactg atttctttaa ttgaacaaca aacttctggt tcacctagag gataagacct
     2161 aaaatgaatc gatctaaaac caatcgtgaa cgtccaatct cagaaattaa tgtagtgcct
     2221 tacattgatg ttatgttggt tttactggtt atttttatga ttactgctcc aatgctgaca
     2281 caaggtgtta cagtagatct gcccaaagca gctagtcaaa ctttacaggc tgctgacaga
     2341 gaacctatca ttgtgtcagt gaatcaatta ggcagctatt ttttaaatat tagtagtacg
     2401 ccagcagaac ctattgaagc tcaggcatta ttagtacgag ttgcggcaga actggagtta
     2461 gccaaacagt caggtcaaaa actcaatgtg cttgttaagg gagatcaggg ggttgcttat
     2521 gggaaagttg ttcaagccat ggcactctta aagcaagcag gggctgagca agtggggttg
     2581 cttactgact ctcagactgg tgatgagggg caagcatgat aagtgatctt acctatagaa
     2641 aagcttttct ttttgctgta acacttcatc tttttttact tgtattgctt tttacagata
     2701 atagcagcaa aaaacctgtg ctaaccattg aatccaaaaa ttcacctggc atgatgcaac
     2761 ctactgcttc tcaacaggaa gtagtaaaag cggtcagtgt agacaataaa gaaataatga
     2821 aaaccgttaa tcgtttgaaa caagaacgtg aacaacagaa gaaagctgaa cttaatcgac
     2881 aaaaggaatt attaaggcaa gctgaggctg caaaacagca aagaatcaaa gagcaacaag
     2941 aaattgcaag attgaaagaa gaagctaata aaattgcaat tgccagaaaa aaacaagttg
     3001 aagaagaaaa aaaacggtta aaagaattag ctgagcaaaa agcattagaa gcgaaacgca
     3061 ttgaagagtt aaagaaacaa aacgaaaagt tggccaaaca acgggaattg gaagctaaaa
     3121 aacttgctga actcaataag aaaaaacaag aagaaaaaga gaaagccgag aaacttaaag
     3181 ctgaacaggc gaaggctgaa aagctgaaag cggaaaaagc ccgtgctgag caagaaaaag
     3241 cagagatgga aagaaaaaga caagcagaag cggctgcagc ccaacaggca gcccaaaatg
     3301 ctgaaagaca agcacggata gctggtgaag ttgataaata caaggcactt attgtcaatg
     3361 cgatcggacg caactggatt ttacctgaaa atgtcgacag ttctctgtcg agccaattca
     3421 ggatacgcct tgcacctgat ggaactgtac tggaagtgtc tctaatccgc agcagtggtg
     3481 atcctttgtt agataggtca gcacaaacag caatatacaa ggcttcacca cttcccgtgc
     3541 ctcaagacgt tgaaacattt aatttgtttc gcgatatcag tttaaccgtt cgtccagaac
     3601 aagttagggg gtaaagctcg tgttcaatcg aattatttca cttttcttgc tgttatttac
     3661 cggtcaagtg attgctcttg atttggaact aactcaagga attaattcag ccctgcccat
     3721 agccatcaat tcttttggct caaacgcggc ggctcaggaa ataggaaatg tcatagagaa
     3781 tgatttgact atatcaggac aatttaaaat tatctctgga ccacaaggcg cgaattctca
     3841 atcttccgtg agtacattac gtcaacttgg cgctgacagt gtagtcactg gccgagttaa
     3901 tcaggttggt aaccggattg aagtgagctt tactttggct gatgccgtag cgaatggcaa
     3961 tattttgttg acaaaaacct ttcagatcaa tgccaatcag gtaagagctt tggctcatca
     4021 tattagtgat gaggtatacc aaaaactgac tggagaacgg gggatattct ccaccaggat
     4081 agcttatatt tcggtacaac gaaatggagg aaggtctcgc tactccctgg aggttgctga
     4141 tgctgacgga cacaatcctc aaagcttact cgtctcttca gagcccatta tgtcaccttc
     4201 atggtcaccc aatggaaagt cgatatccta tgtttctttt gaaaagaaaa aagctgaaat
     4261 ttttaccgtc tctgttgaaa caggacagcg tcgcttaatt acgagcttcc caggaattaa
     4321 tggagcgccc gcatggtcac ctgacggtca gcatttggca gttgtattat ccaaaagcgg
     4381 tacacccaaa atttacgatg ttgatttgag cagcggttct atgaaacagc ttacttttgg
     4441 caattctatc gatacggaac cacgttattc tcctgatggt cgcagtttgc tgttcacttc
     4501 agggaggggc gggtcaccgc aagtctatcg cttatcattg gccgatggcc aaataagtcg
     4561 agtcactttc gaaggcaatt ataatgcccg tgcctcctat actccagata tgaagcatat
     4621 cgtcatgctg cacagggagg atagacaatt taatattggt gtacaaaata caggtggtgg
     4681 cccgatttcc aatttaacct tttctggcct tgatgaatca ccatcagtct ctccaaatag
     4741 tcgtttagtg ctttatgcta cccgttatca ggacagaggg gttttaggca ttgtttcaat
     4801 tgacgggaga attagaatga gacttcctgc tcgtgaagga gatgttcaag agcccgcttg
     4861 gtccccttac ctgagttaag aatgataaga agcatattgg tattattttt tttatttatt
     4921 gctaatgctg gttatgcatg gaacgcgata gggcaccaac tggtagccca gatcgcatat
     4981 gataatttga cacctcaatc caggagaatg tgtgatttat attcccattc aaaatcgaag
     5041 acgtcgtcta atgttaattt tgtaaaatca gcttcatggc tggattccat aagagcacat
     5101 gatgttcatt ggtttgatgc tttacattac attgacattc ctttttctat ggatgagaca
     5161 gaattaccag tcttgacaga catcaatgca ctctggggaa ttaatcaggc aattgctgtg
     5221 ctgtcttcca aaaaagccag tattgctgat aaaaaattga gcttacgcat attggtgcat
     5281 ttggttggag atattcatca gcctttgcat accgttacaa agataagtaa aaaattacct
     5341 aaaggtgatt taggtggtaa tttatttcag ttagctaaaa atcctattgg gaataatttg
     5401 catcaatatt gggataatgg tggcggtatt ctgattggtc aagacaaatt ttttcagatt
     5461 aaaaacaagg cgaggcaatt ggaaaagaaa tggtcttgcc aatcagccag taaggaaaaa
     5521 aatccgcaac aatggattaa tgcatcacat caattggcat tgactaaagt ttataaggtt
     5581 tcagctcatc aggtgcccgg caagcaatat cagttaaata ctcaaaatat tacagaaaaa
     5641 cagatacttc tggctgggtg tcgactcgct tatctgctaa ataatattgc cgaaggtaaa
     5701 aataaactta tttaatttca gcttcctttt taggaggggt gaattattgg ggcatgtctt
     5761 tattgtaatt gtcagttact ccctttaaac cattttctat atatttaaca gaagcaaagc
     5821 cagccttgag aagtatatct aacgccatct tgcttcgcgt tcccgactgg cagtacagaa
     5881 taataagccg attagggttt agttcatgta agcgttgagg cagctcatct aaaggaagca
     5941 caataccccc tatattttgt atttgatgtt cctttgtact acgaacatca attagatgaa
     6001 tgtttttatt attcgtaaat aattgataaa attcatcaag agttattcta tgatggcatg
     6061 gctcaatttg agctgaacaa ttaacaggat taattaattg tctaattgac tgattctgaa
     6121 tgcagaattc acaatccgga tttcttgaaa taatgatgtt cttaaaggtc attgttaaca
     6181 ggttaatagt aagcaaacgc ttttttaatg gattgccaat ttgtagtatc catttgatta
     6241 tttctgttgc ctgaataata cctagcatcc cgggtaaagt accaattacc ccggctccct
     6301 cgcaattggg aatattgata tcgcttacag aaaccgggaa gatacaatgg aggcagggat
     6361 cttgtttccc atggaatata gagcaatacc cttggaaacc tgaggcacta gcatacacat
     6421 aaggtttttc cagttcaaag caaatgctgt gaatcaaata tcgcgtataa aaattatcgg
     6481 ttccatctgc gatgatgtca tactgcgtaa ttagctcagc cgcattttct tctgttaatc
     6541 tactggagta agattcaact tgaatcaggg gattaatagc cagaagttgc ttttttgcag
     6601 taacagcctt ttttttatta atatgggtat gattataaag aatctgccta tgcaaattac
     6661 ttagctcaat gatgtcatca tcgacaatcc ctaacactcc gacacctgct gcagcaaggt
     6721 aaagtaagag aggcgaaccc aaaccgccaa gcccaatgca taatactcga gaattcttaa
     6781 gtttctcctg tccgtctaat ccaatttctt ccatctttat ttgttgagaa tagcgggtta
     6841 atttgttcat tgccaaattt gatttattca ttatgtgatt cattcatttg agttaaaaat
     6901 tgtttggctg caactaaagg tgctgatgct tttgtaatgg cagagatcac tgacacacca
     6961 tcaatttttg tttttaagac atctgaaagg ttctttaaag ttatacctcc aatggcaact
     7021 aatggataac gaagcgtttt tcgccaacgt tcaagtcgtg caattccttg tgcttgaaat
     7081 ggcattattt tgctggttgt ttcatatatg gggccgcaag cgacgtagga agggttaaga
     7141 gcatgagccc gagcaacttc gtaatagcaa tgcgtactta tacctaagaa taaacctgat
     7201 cgattaattc tatcgacatc agctttttcc agatcctctt ggccaaggtg aactcctgca
     7261 gcaccataat gaatagcaag ttcccagtga tcattaataa ataatgcagc attatactga
     7321 tttgccaaat ggacactccg ttttatctct tcttccaacc gctcttgaga ggcttctttt
     7381 attcgtaact gaatgcactt aattcccaat ggcaaaagca tttctaacca gtggctacta
     7441 tccacaatgg gataaaaacc catagaatat tttttaaatg aaggaactgg tttaatgaac
     7501 ggtgttggtg ataaataggg gagatcggcc tcatcttctg gccaaccatc atgataaagt
     7561 tgcgaggcgt ctttatcaat ttctattgat tggcgtatgc cacgattgac atacatttta
     7621 gcaataacaa tagcatcttt tattgagtag cctagagcaa gacaagctgt gagtgctgaa
     7681 gatagaacac agcctgtccc acggtaattt gtttcaggaa aacgacgatt tgcaatccaa
     7741 aacgactctt ttccatcagt ccaataatct tgactgaatg agttatcttt tacatgtcct
     7801 cctttcagta atacctgctt tgctccaagt gataacagat ctgaagcagc attgattata
     7861 tcctgataag aataaatgct ccgatttaaa ataatttctg cttctatccg attaggagta
     7921 ataatagtaa tgtacggaaa caattgaatt aaattatttt tatgctgttg taaatctgga
     7981 aaaaacaggt tagttcccga ggaggaggta attatcggat caagaacaac aaatccttca
     8041 taacccttta agaaataagc tatttcttca cagattggtg tagaacataa cataccaatt
     8101 ttaatggcat ccggttttaa atttaattcc aaggcacggc actgagcagc aacctgatct
     8161 ctggatatct cttctactgc tataattgag tgagcatttt gtgcagttac tgcggtgatg
     8221 actgaacaag ctctgacatt caggcgacta aaagtttcca tgtcagcatg gacaccagct
     8281 aatccggatg agtcaacacc agcaattgtc caaacaatcg gttttttcat aaattgttta
     8341 cctgatgcca aaatggagta tcgattaatg gagtacttgg gtgagctaca tttctctcag
     8401 acatcattcc tcctgtaaat gcctgatgac ctgcaataac agcatggcgg aatgctgttg
     8461 ccatgagagc aggatgatta gcaagagcta cagcagtatt tagaagcacg ccatcaaaac
     8521 ccaattccat cacctgtaca gcatgagatg gtttaccaat cccggcatca atgattaatg
     8581 tgatatcagg aaatcgataa cgcaaagttt ccaaggcata ggggttaatt aaacccttac
     8641 ctgagcctat aggagctccc cagggcatta aaattttaca accagcatca accagttttt
     8701 gacataaaac gagatcatct gtgcaataag gaaaaacttc aaatcctctg tcaatcaaaa
     8761 ttctggctgc cttgattaac tcaaatggtt cgggctgtaa attataatca tcgcctatca
     8821 cttccagttt tatccattga gtattaaata actccctcgc aatttcagct gtattgatcg
     8881 ctgcctccgc attacggcaa ccagccgtat tgggcaaaag atgacaatct agttttttta
     8941 ccgcttgcca aaaggactct ccatccaatc ctgcagaagt ctggcgtttt attgatattg
     9001 taataacttc tgtacccgaa ttatgaattg cctgctgcat atgctctaac gaaggataac
     9061 acgcagtacc taagatcaaa cggctactta atttttttcc tgccaaattc cacatcatta
     9121 acctccttgc atgggaaaga ggatatcaat gcagtcattg gcttgcaaaa ttgtagtttc
     9181 ataagcttta tgtggtacat gatgattatt tatagcgaca gcaaaatgct gttgagtata
     9241 attaagctgc tttaaaaatg cgcttaatga taatgagggt tggatgttgt aaattttatc
     9301 gttgaaatag acattaatca caataattct cccaaagttc tggataattc agatgacgaa
     9361 aattggatgt cacaccccgt aaaatttctt ctgccaaggc tggggctatt aaataaccat
     9421 gacgataaag accgttaact gctattagcc cgtcggcaaa tttaatacgt ggtaaatgat
     9481 ttactaaggt tggacggcaa tgggtcactg tttttataat gcgtgcttca tcaaagttcc
     9541 tatgtaaata atacacagcg gtcaataatt ccaaagccgt acgtactgaa accggactaa
     9601 aatcttctgc ctcaatttcg ctagcgccta tgaggtaaaa atttccaggt ctgggtacaa
     9661 gatatagact gtaccttgga tgcagaagac gaatagggcg atgtagttga actcctggcg
     9721 catgaagcca aatgagttca cctctaatac ctcgtaaatc agaaaataca ttttgcgcac
     9781 ctaaaccacg acaatcgaaa acgacatcaa aatgatatct ttgttctttt gtattgatct
     9841 ctccaggttt aagcgataag acaggagtat tggtaatgtg aggtatacaa acagagtcga
     9901 gataattttt taaagacaac attagtgttt ggcaatcaat atgcgcttca tttggaaaat
     9961 aataagcagt ttcaaacttt gtcagctcag gctcaagcgc aatgagattt tcatgggata
    10021 atttttgaaa aacagaatta ctcggattga gttgactcag aatacgccga ctaaagtgaa
    10081 tccattccgc ctgatcgcct gggtggcata gcaccagact acccgattgt tgaaaataaa
    10141 cagattcagg caaatcctca ataatacgtg gccaacagtt cttaatagat tcttgaccca
    10201 aggtggaaat caatagaatt gatttatcca attcagaaaa cggtgttaat agacctgcag
    10261 cagcagtact gcaattcatg ctttcattag agcgatcaaa aagggatacc tgccagcccg
    10321 cattatgtaa tacaaaagcc agcagacgcc ccatgatccc tgagcctaca atgcctgctc
    10381 gcataattaa ttttcaagac aacaggcgat tggtttcaaa tcagaataag gtgtatctgg
    10441 caaaaaacga ttcgtatagc attgcgagat atcaaaatgt tcatcaataa tttttaggtg
    10501 cttggtatag cgtccaacct tatcccagtc tctgtcaaca ttaattaatg tacgtgaaaa
    10561 aaatggtaat gttcttgtaa aaattttttg atataaagga gtccgcaact gtggtttagc
    10621 ctgacataat aactcatagg cttcttcagg tttttctgtc gtgtaggctg caccgcgctg
    10681 tgttgctctg agaaatcctt tgactaattc gggttgctgt aatgttattt caggaacaat
    10741 aaattgtatt gagcagaaac aacaacagcc taaaccagct aattgatcga ttcgtaaaaa
    10801 tacagtttct ccgcaaagat gctccagttc aactttttga aaattaataa aaccaatacc
    10861 cgtgtcgata acatcccgat aaatggcatc tgtgacattc atgccaatac gtactgtttt
    10921 gtagctcgtc ggatcaatac ctgcgaggct ggccaaatca tcaataattt ttttgccgaa
    10981 ttcgccgata taacctactc gtttcccaac aatatcctgg aaagaattga tgccacttga
    11041 ttttaaagca ataagtccgg tagggggctc atcaagaagc gttcctatgg aagtaactgg
    11101 ataacctttt gctttggctg caacagtatg aatcattgct ttaacaccga aatctactgt
    11161 tcccaggcca acaatttcgg tcacatcact gggatctgca ggctccagaa tggcgagctt
    11221 gatatcttct tccgaataaa atcccaattg ttgtgccaca agtatggggg tatgataagg
    11281 gttggtgtac caattaagca gtagggtaac cctggatttt agtgatgaca tcgccataac
    11341 tccttatgtt attattttaa atattatgga gatggcaaaa gggaaccatg ctttaaaaaa
    11401 gccatggttt ttttgaaggc gtccttacgc tgatatgatt cagatcaagt tcaacgggta
    11461 actctcagcc ggatttcccg acaccccgcg ccatctaaca aactcaaata tactaaattt
    11521 tattatatgc tttgtcaaac tagcgataat attg
//
LOCUS       DACVWI010000094        11372 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.094, whole genome shotgun sequence.
ACCESSION   DACVWI010000094 DACVWI010000000
VERSION     DACVWI010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11372
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.094"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            28..1374
                     /gene="mavG"
                     /locus_tag="JBH85_09135"
     CDS             28..1374
                     /gene="mavG"
                     /locus_tag="JBH85_09135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavG"
                     /protein_id="HAU0946365.1"
                     /translation="MKEIIELLATLDELQKPYIHRVKTRLSELLNLDEKENELMRIEQ
                     STSRSWEEGATTDLRIGPIKSKKRIEEIRAVLITLSGAKAVKYEEGHNLENNAVEFIV
                     TGCDVEQLEGFTPPNQEEMQNTIPVMTFIRMSVAGNREYVRGISFNSEKLDGENYLGS
                     FKEGELNTSTQEWFSVLELLDLLNSESELNLIQIQNDLKSLLGVKFEVYFHSSSEEFP
                     IDLRTGSLDLNEAGAQQLLRAMDSLVLLGCLKTESKELEDGQKVCVIKQVNPQELHKF
                     SLKKEKNTNANSEMLSNIIELLKQSFPNNQVIRDLVVFDGREGRSMSRPYLHIRTQVY
                     HQEATSDYKSAMIILKKLQDKTSKKISFDFRNEMVEMKDESRPVYMSSIENTIKSSQF
                     IIDVAVGLTTQQLPELQDICAEINQSRLKHRHRHNLFKPQIEEQKINEQNQSLFLG"
     gene            complement(1463..3193)
                     /locus_tag="JBH85_09140"
     CDS             complement(1463..3193)
                     /locus_tag="JBH85_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946366.1"
                     /translation="MNRIKTTIHGMKMKIILSILIALHATSTYAGQQVLVLSGGDNPG
                     LNHYTQYLQTKTLYEHLITRFNPETVSIYFGGGNTPTTQLSPFDVHKLINTKDNQQNK
                     EDVMFTGIIANNQQANKYNVDAFFLSSKIQQINPGDNLLLFVSDHGMPHGFLEDKNIN
                     PYSNNCIDLWHYQKPFINNFTSAKNFSKACLSKNELSSLLTLIPSQHVIFAMSQCYSG
                     GFHQLSVTTQDGYPVANTKICGFTSSTDDHYASGCTADANGATYQGYERSFTEWYTGH
                     GVIDGKKIREPAKSMLVAHQNAIIDDMTVDIPLSTSDYYLLQWAKLFASKQFKSRTKH
                     YDNNMIQSIYLNYKKRLQSSNNDALSQFMHVARASEDKIVQLMPEAGEFASLSITQQK
                     QKISSLEKQLERQGKELQAVWEGMMNLTLNVITPTWEKTVNHSKNQPLNEKQQTFEKE
                     FYQTIVKLNLYQHPYQFEMYYLQYLSEKQNDPDLVNYQKNRNAIIYQWARAHNNDSLA
                     NAIKNWEKLNKKQLSLTEHIAEEEKKKQWLKRIFTYNQIMASWVTLLAIHDEKALDDL
                     EGLLKCQNAS"
     gene            3482..5743
                     /gene="lem25"
                     /locus_tag="JBH85_09145"
     CDS             3482..5743
                     /gene="lem25"
                     /locus_tag="JBH85_09145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem25"
                     /protein_id="HAU0946367.1"
                     /translation="MSTSEKDVREQKVKTVTLSFLGTGQHREKVHHILTSFHNTISEV
                     NKDNPTVAMRMFDGPGSEPKSGDSKDPIPGTYIYNPKDNSKILISPVISQTITNAIQK
                     LTGNLAGEGIEHLLFEAVLYLNDIIEKNGGKLPETVNLHGFSRGADTCMRMANLLYQL
                     YPDIKVNLFLIDQVPGPGKRDDPHSYTVPPNVEHFESTLMLHEYRPGFDPQHSGRYVI
                     ADPEKTKVVVKPYYGEHNTGNRVTEDPNTNHTAILLNDDMNRFCRETGSLPSVGISPP
                     IIARVGDKKEEVRTHSELSPEKRFELLCGMKENEWGYAKLTKKYHERSILSKREDYVQ
                     DSRLFVNQEHRELFKQLYPKSFNWFFEKNHGGQTKKEEVIVELKSLSEDPRYEHFFSS
                     LAKHFQINENNIAGTLPEPSGIDRDEKSSFGQPPVRDRLSYLQHSLTSIANYYHYHCD
                     EKSSTNESVKNLLLERVKESRTKPDSEAIKHLEQTMDEVRQILESKNEKGFLWQQINH
                     ISPNARQYCEQVKAALREHLEHNQVLSDTQKEEIRKAMDRMDNIVNDSSKDSQQKYRE
                     IRREVIELNAKATTPEDDNQLTRSHFQKAYFELSGDTQKTLNLESLSQTLNQLSKAHY
                     GETSMTDKITQRLDGYKNRNWFWNSVKEVLNFFNIPLPKLHSEVKEQIADKLKERLVD
                     LKEKGMGNDVNAITRELGKAREDLIEHYKKTSKLEMGELDKIINKSMEELLVARKVTK
                     DLVHEEVSQVKLN"
     gene            complement(5838..6389)
                     /locus_tag="JBH85_09150"
     CDS             complement(5838..6389)
                     /locus_tag="JBH85_09150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946368.1"
                     /translation="MKKDITLFTSARPELKFFRLSECKEHLDTAAMWAKNAWGYMHLD
                     DEQFHYKQLQELCEHVYIAMYDGLPVGMLAVIEKTLSLEENREESSEKIVEEPSTPEI
                     TEMKNAYLDYVYIDERARSIGLAGIIIEKAKNLAREMNAEVMSLETLNSTLNGFYKRK
                     GGRVICEGRYNDSYPTEVMRLRF"
     gene            6584..7378
                     /locus_tag="JBH85_09155"
     CDS             6584..7378
                     /locus_tag="JBH85_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HAU0946369.1"
                     /translation="MNKKLSLIALCISSLSLHAGTMGEVVSPAYPWFASIGTGYSWTE
                     KPGIVNPNPLFWDFSLQGYDSDLGDRGFYTFAVGKQIHQYIDISLSYLDHEVFNYQKF
                     QTSLPGTSGTPGFTGRSRTRYFELDNKALLVNGYLHPAQAWTSLASIALTPFIDGGIG
                     YARNEVRNFYTVGTTTVVGVAIGSTSSIGEPVNKNSFAWQASAGVNFHPTGSHLSIDA
                     GYRYYDGGQFNGPSVVYTNSDGFQTGTPWSGRLKANQVFVDFKYTV"
     gene            complement(7508..9223)
                     /locus_tag="JBH85_09160"
     CDS             complement(7508..9223)
                     /locus_tag="JBH85_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HAU0946370.1"
                     /translation="MKKTGYLLMFVLVACLCNQKIVAAIPLVELIAKPNPSQFVKTQS
                     SVLLFYTLRNNTSVGFPLSYLFSSNNASLSNAGNTCGTFIGPNKTCQFTVQYQAPAIS
                     ITEKLIVQVAYQGRAPVSDIVSINVDNNIACTLLNTASYQTPFCQEQYQKVLQFTPGV
                     FNTTNQNVQEEQTLGGIFGLYRKTGGTEQICYISCGLRSLNGAPPNENTVFELASVTK
                     TFTGSVLGKFIINGTIVSQFDEIRNYPHPAGLSFNINEETVSFQQLATFSGGVCFSNA
                     PSVNQSSTDQAVNQMNFITDINALNPDPNSGNCSNGAPNVSPVYATPPFLPTHNFYSN
                     SSVGLLGQSLIRIDGFANVLETDFNNWICKNVANPLDMIRTSACLPDEAHNGTCGAAA
                     AYCAYTANWITAEYASGYHLFQNSYQLGNPFPFLPWAPAGGIRSNASDMIKFIRANLG
                     FNTGVHNPEQAQLIQGMLMAHEPNIYFPGGTEPNIGNQSPIRGGQGYAWVCMPSPTNG
                     DRICGKIGGHKNFRSFLGLNKSKNYGLIILFNTGALTTDGSLTPATTPPTISQIGTNL
                     LENID"
     gene            complement(9236..10081)
                     /locus_tag="JBH85_09165"
     CDS             complement(9236..10081)
                     /locus_tag="JBH85_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HAU0946371.1"
                     /translation="MIKDVFSSSFYFLFFYFMIIYSLDCKYEFSIIVNKKRATVYTCI
                     RFGITSIVLLAICSVPSYGTPIFRDHSLTLSGLIGYTDFKDPVDQQLVISHYVTDLLT
                     NSHKHTHPSVLISAKQQLNFEANKIHKIMLGPALYFQKLHYSGDVWELMLPEFYNYQY
                     DYTSNNVNFLIEGDLYFNPISTWLISFVTAGLGYGVAYIHYDDYALPGIDPVSERHHF
                     DSSIKGIYQLGAGLAVPVNPNWSINLRYAYIHMGKVHTSPNSLGPIELVLNNQNILIG
                     INYSI"
     gene            complement(10192..11298)
                     /gene="legA1"
                     /locus_tag="JBH85_09170"
     CDS             complement(10192..11298)
                     /gene="legA1"
                     /locus_tag="JBH85_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegA1"
                     /protein_id="HAU0946372.1"
                     /translation="MCNLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTL
                     SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAIT
                     GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ
                     AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL
                     LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL
                     QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA
                     CALLLSIPSVLALTKANNYYINETGGRLDLRAVA"
BASE COUNT         3569 a         2033 c         2275 g         3495 t
ORIGIN      
        1 ccttttactt tacttggaat ttaaaagatg aaagaaatta tcgagttatt agctaccttg
       61 gatgaattgc aaaagcctta tattcatcgt gtcaaaacta ggttaagcga gcttttaaat
      121 ctggatgaaa aagaaaacga gctaatgcga attgagcaat cgacaagccg gtcctgggaa
      181 gaaggtgcta caaccgattt aaggataggc cctataaaat caaaaaaaag aatagaggaa
      241 ataagagctg tactcatcac attgtctggc gccaaagcag tcaaatatga ggaggggcac
      301 aacttagaga ataatgctgt ggagtttatt gttacgggat gtgatgttga gcaactggaa
      361 gggtttaccc caccgaatca ggaagaaatg caaaatacta ttcctgttat gacgtttatt
      421 cgtatgtcag ttgcagggaa tagggagtat gtgcgaggga tttcattcaa ttctgaaaaa
      481 ctcgatggag agaattacct tggttcgttt aaagaaggcg aactaaacac gtcgacacaa
      541 gaatggtttt ccgttcttga attattggat ttattaaata gtgagtcaga acttaatctt
      601 attcaaatac agaacgactt aaaatctctt ttgggggtga agtttgaagt ttattttcat
      661 tcatccagtg aagaattccc cattgatttg cgtacaggaa gcttggatct caacgaggca
      721 ggcgctcaac aactactgag agcgatggat agcctcgttt tgcttggttg tttaaaaaca
      781 gaaagcaaag aacttgagga tggccagaaa gtatgcgtta tcaagcaggt aaatcctcag
      841 gaacttcata agttttcact taaaaaagaa aagaatacta atgcaaactc agaaatgctc
      901 tccaatatta ttgaactttt aaagcaatct tttccaaata atcaagtaat ccgggatctg
      961 gttgtctttg atggcagaga gggaaggagt atgtcacgac cctatcttca tattagaacc
     1021 caagtctatc accaggaagc tactagtgac tataaaagtg cgatgattat tctcaaaaaa
     1081 cttcaggata aaacatcaaa aaaaatcagc tttgatttca gaaatgagat ggttgagatg
     1141 aaagatgaat caagacctgt atacatgagc agtattgaga atactattaa atcatctcaa
     1201 tttattattg atgttgcggt tggtttaaca acgcaacagc tgcccgaatt gcaagatata
     1261 tgtgctgaaa taaatcaatc cagattaaaa catcgtcatc gccacaatct cttcaaaccg
     1321 caaattgagg aacaaaaaat taatgagcaa aatcaatctt tatttttagg ttaaagtcaa
     1381 attcgacata agaggtataa gatgcctttt atgtcgccac tttagcatta tgctttgtta
     1441 tcttatcctg caatattttt attcaactag cattttggca ttttaacaaa ccttcgagat
     1501 catctagggc cttttcgtca tggatagcta atagcgtgac ccaggaggcc atgatctgat
     1561 tgtaggtaaa aatccgcttt aaccactgtt ttttcttttc ttcttcagca atgtgctcag
     1621 ttaaggaaag ctgctttttg tttagttttt cccaattttt tattgcgttc gccaaagaat
     1681 cattgttgtg ggctcgtgcc cattggtaaa taattgcgtt gcgatttttt tgatagttca
     1741 ctaaatcagg atcattctgt ttttctgata gatattgcaa ataatacatt tcaaactgat
     1801 aagggtgttg gtataaatta agtttaacaa tagtttggta aaattctttt tcaaaagttt
     1861 gttgcttctc attgagaggc tgattttttg aatgattcac tgttttttcc caggttggcg
     1921 tgatgacgtt aagtgtcaga ttcatcattc cctcccaaac agcttgtaat tctttgcctt
     1981 gtcgctctaa ttgcttttcc agcgaactga ttttttgttt ttgttgtgtt atggatagag
     2041 aagcaaactc accggcttca ggcattaact gtacgatttt atcttcggaa gcacgggcaa
     2101 catgcataaa ttgggaaaga gcatcattat tgctggactg aagtcttttc ttataattca
     2161 ggtaaatgga ttgaatcata ttgttgtcgt aatgtttcgt gcgggactta aattgttttg
     2221 atgcaaataa tttggcccat tggagtaaat aatagtccga agtacttaat ggaatgtcta
     2281 ctgtcatgtc atcaatgatc gcgttttgat gggcaaccaa catactttta gccggttccc
     2341 tgattttttt tccatcaatg acgccatgcc ctgtgtacca ttcggtaaaa gaacgttcat
     2401 atccttgata agtagcgccg ttggcatcag cagtgcagcc actggcatag tgatcatctg
     2461 ttgaggaagt gaaaccacaa attttagtgt tagctacagg atagccatct tgtgttgtaa
     2521 cagataattg atgaaaccca cctgagtaac actgagacat cgcaaaaata acgtgttggc
     2581 ttggtattaa agtgagcagc gatgataatt catttttgga taaacaggct ttgctaaagt
     2641 ttttagcgct agtgaagtta ttaataaatg gtttttgata atgccagaga tcaatgcaat
     2701 tgttactgta gggattgata tttttatcct ctaaaaaccc atgaggcatg ccatgatcgc
     2761 tgacaaagag aagcaaatta tcaccagggt tgatttgttg aattttggaa gataaaaaaa
     2821 aggcatccac attgtattta ttggcttgtt gattgtttgc gataataccc gtaaacatga
     2881 cgtcttcttt gttttgttga ttatcttttg tattaatgag tttgtgcaca tcaaatggag
     2941 aaagttgtgt ggtcggtgtg ttacctcctc caaaatagat gcttacggtt tcgggattaa
     3001 atcgggtgat taaatgctca taaagagttt ttgtttgcag gtattgggtg tagtggttaa
     3061 ggcctgggtt atctcctcct gacaggacta aaacttgctg gccagcataa gtagacgtag
     3121 cgtgcagagc aattaaaatg ctgagaatta ttttcatctt cattccatga atcgttgttt
     3181 taattctatt cattgttgtg tcaaggatag caattcttgt attgaactgc taacgataat
     3241 tgaaacgtta cgattaaaga ctaagactaa ttagagatag gcaagatata gtcagctatc
     3301 agcactgcta ctccttgttt tttaattacc cttctctaac cttactctct gttcgagttc
     3361 aatacaggtt ttaaataagt ctatttttaa gaaagacatt cattttaagc aattatggag
     3421 catttattgt gcgcatggtt taaaattata tcaaggacca ttattagttg atattcctgt
     3481 tatgagcaca tcagagaaag acgttcgtga acaaaaagta aaaacagtca cattaagttt
     3541 tctgggtaca ggacaacatc gtgaaaaggt tcatcatatt ctcacgagtt ttcataatac
     3601 aatctcggaa gtaaataaag acaatcctac agtggcaatg agaatgtttg atggtcctgg
     3661 ttcagaacca aaatcaggcg acagcaagga tcctattcct gggacttata tttataaccc
     3721 aaaagataat tccaagatat taattagtcc tgtaatctcc caaacgatta ccaatgccat
     3781 acaaaaactg acaggaaatt tggcgggaga aggtatagag catttattat ttgaggcagt
     3841 actttacctt aatgacatca ttgaaaaaaa tggaggcaaa ctgcctgaaa cagtgaattt
     3901 gcatgggttt agccgagggg ctgatacttg tatgcgcatg gcgaatcttc tttatcaatt
     3961 atatcccgac atcaaggtca atttatttct tattgatcag gttcccggac ctgggaaacg
     4021 ggatgatcct cattcttata ctgttcctcc taatgtagag cattttgagt cgacattgat
     4081 gttgcatgaa tacaggcctg gatttgaccc tcaacattct ggaaggtatg tgattgcaga
     4141 tcccgaaaaa acaaaagtag ttgttaaacc gtattatgga gaacacaata ccggtaatcg
     4201 tgttaccgaa gatcccaaca caaatcacac cgctatttta ttaaatgatg atatgaatcg
     4261 cttttgcagg gaaaccggct cactcccttc tgttgggatt tctccaccca ttattgccag
     4321 agtaggagat aaaaaagagg aggttagaac tcattcagaa ttatctccag aaaaacgctt
     4381 tgagttgtta tgtggtatga aggaaaacga atggggctat gccaaactga ccaaaaaata
     4441 tcatgagcgc agtattctgt cgaagcggga agattacgta caagactcca gattgtttgt
     4501 caaccaggaa cacagggaat tgtttaaaca attgtatccc aaatcattta attggttttt
     4561 tgaaaaaaat catggtggtc aaacaaaaaa ggaagaagtc atcgttgaat taaaatcatt
     4621 atccgaagat ccaaggtatg agcatttttt ttcatcatta gcgaaacact ttcaaattaa
     4681 tgagaataat attgcaggaa cattgccaga accttcaggt attgataggg atgaaaaaag
     4741 tagcttcgga caacccccag tcagggacag gctttcttat ttacaacatt cgctgacctc
     4801 cattgcgaat tattatcact atcattgtga tgagaagagc tcaactaatg aatcggttaa
     4861 aaatttgctg ttagaacgtg ttaaagagtc aaggacaaaa ccggatagcg aagcaatcaa
     4921 acatttggaa cagaccatgg acgaggtaag acagatactc gagtccaaaa atgaaaaagg
     4981 tttcctctgg caacagatta atcatatttc ccccaatgct cgacaatatt gtgaacaagt
     5041 gaaagcagca ctccgggaac accttgagca taatcaggta ctatcagata ctcaaaaaga
     5101 ggaaattcgt aaggctatgg atagaatgga taatatagtc aatgatagta gcaaagacag
     5161 tcaacagaaa tatagggaaa taagaagaga ggtgattgag ttaaatgcca aagccaccac
     5221 accggaagat gataatcaat taacaagaag tcatttccaa aaagcttatt ttgaattatc
     5281 aggggataca caaaaaactc tgaatttaga atctctgtct caaacattga atcaactatc
     5341 gaaagctcat tatggtgaaa ccagtatgac ggacaaaatt actcagcgat tggatgggta
     5401 taaaaatcga aattggtttt ggaattcagt caaggaagtt ttgaattttt tcaatattcc
     5461 tcttcccaaa ctgcattcgg aggttaaaga gcaaattgct gacaagctca aagaaagact
     5521 tgttgatctc aaagaaaagg gcatgggtaa tgatgtgaat gcaatcacca gagagcttgg
     5581 taaagctcgc gaagatttaa ttgaacatta taagaaaact tcaaaactgg aaatgggaga
     5641 attggataag attatcaata aatcaatgga agaactcctt gtggcacgca aagtcaccaa
     5701 agacttggtc catgaggagg ttagtcaggt taaattgaac taaactctgt tccattctga
     5761 gagttatcat aagcaggttt ttagtttgac aataatatga atcaggctcc aagctgcaga
     5821 caaaattgct gatatgatta aaaccttaat ctcatcactt ctgtaggata actatcgtta
     5881 tatctgcctt cacaaatgac tcgtccgcct tttcttttat agaatccatt gagggtggaa
     5941 ttcagtgttt caagagacat tacttcagca ttcatttctc ttgcaaggtt ttttgctttt
     6001 tcaataatta ttccagctag ccctatgctt cgggcgcgtt catcaatgta cacatagtcc
     6061 aaataagcat ttttcatttc agtgatttct ggggttgagg gttcttccac aattttttcg
     6121 gaggattcct ctctgttttc ttcaagagag agtgtttttt caatgacagc gagcattcca
     6181 accggtagtc cgtcatacat cgcgatataa acatgttcac acaattcctg cagttgtttg
     6241 taatgaaatt gttcatcatc cagatgcatg tatccccagg cattctttgc ccacatggct
     6301 gcagtatcca gatgttcctt gcactcggat aatctgaaaa attttagttc tggtcttgct
     6361 gatgtgaata aagtgatgtc ttttttcaaa cttgtacctc ttgcgactat gaattagcaa
     6421 atggaaaaaa tgctatatga tactgtttat ctgcacttta tcaacccaag atagtagttt
     6481 ggcaagcttg ctaatttttc ttgttcattt aaactaaacg ccgttttcaa aggcgcttca
     6541 taacagtaag tctgttatta cccatttaaa taaggatatt atcgtgaata aaaagttgag
     6601 tctaattgct ttatgtattt cttcgctttc tttgcatgcg ggaacaatgg gagaagttgt
     6661 ttcacctgcc tatccatggt ttgcttctat aggcactggc tattcctgga ctgaaaagcc
     6721 agggattgtt aatcctaatc ctcttttttg ggatttttca ttacaaggtt atgattctga
     6781 tctgggggat aggggatttt atacctttgc tgttgggaaa caaattcatc agtacattga
     6841 tattagccta agttatcttg accatgaggt ttttaactat caaaaattcc aaacgtcact
     6901 acctggcacc tctggtaccc ctggttttac aggaaggtca agaactcgct attttgaact
     6961 tgataataaa gcattattag taaatggcta cttacatcca gcccaggcgt ggactagtct
     7021 ggcgagtatt gctttgaccc cattcataga tggcggtatc ggttatgcgc gtaatgaagt
     7081 acgcaatttt tataccgtag ggacaacaac tgtggttggt gttgccattg gttccacttc
     7141 aagtattggt gagccagtta acaaaaacag ttttgcgtgg caagcgtctg ccggggtgaa
     7201 ttttcatcca acaggaagcc atctgagtat cgatgcgggt tatcgttatt atgacggcgg
     7261 tcaatttaat ggaccatcag ttgtctatac caacagcgat ggttttcaga caggaacacc
     7321 ctggtcgggt cgtttgaagg caaaccaggt ttttgtcgac tttaagtata cagtgtaatt
     7381 attccaatca ggaaaattgg attactgcat tgtcgagcta catggtttat gcagtagttc
     7441 acacatagca ggtaaaggaa tgatgaatgg ttacactccc gtttcctatc tatcgaagca
     7501 gaatatatta atcaatattc tctaataaat tagtgccaat ctgacttata gtcggtggtg
     7561 ttgtcgcagg agttagactt ccatctgtcg taagagcgcc tgtattaaat aaaataatca
     7621 aaccataatt tttactttta tttaagccaa gaaagctgcg aaaattttta tgtccgccaa
     7681 tttttccaca gatcctgtct ccattagtcg gagaaggcat gcatacccag gcatagcctt
     7741 ggccaccacg tatggggctc tggttgccta tattaggctc tgtgccacct ggaaagtaaa
     7801 tatttggttc atgggccatc aacatgcctt gaattagttg ggcttgttcg gggttatgaa
     7861 cccctgtgtt aaagcccaaa ttagcgcgta tgaatttaat catatcagag gcattacttc
     7921 gaattcctcc agcaggtgcc cagggtaaaa atgggaaagg attgcccaac tgataactgt
     7981 tttgaaatag atgatatcct gaagcgtatt cagctgttat ccaatttgca gtataagcac
     8041 agtatgcagc tgctgcacca caagtgccat tgtgagcctc atcaggaaga caagcactcg
     8101 ttcttatcat atccagagga ttggcgacat tcttacatat ccaattattg aagtcggttt
     8161 caaggacatt agcaaaacca tcgatacgga taagactttg tcctagtaaa cccacgctac
     8221 tgtttgagta gaaattatgt gttggtaaaa atggcggagt ggcgtataca ggacttacat
     8281 tgggtgcacc attactacaa ttgccgctat tcggatcagg atttagcgca ttgatgtctg
     8341 ttatgaaatt catttggttg acggcttgat ctgtgctgct ttgattgaca ctgggagcat
     8401 tggagaaaca aactcctccg gagaaagtag ccaattgttg aaaactcaca gtttcttcat
     8461 tgatattgaa gctaagacct gcgggatgag gataattccg aatttcatca aattgggaaa
     8521 caatagtgcc attgataata aatttcccta ataccgaccc ggtaaaagtt ttggtgacgg
     8581 aggctaattc aaatactgtg ttttcattgg gtggtgcacc atttagagac cttaatccac
     8641 aacttatgta gcagatctgt tcagtgcctc ctgtcttccg atacaggcca aatatccctc
     8701 ctaaagtttg ttcttcctga acattttgat ttgttgtatt gaatacaccg ggagtaaatt
     8761 gaagtacttt ttggtattgt tcttggcaga aaggagtttg ataggatgcc gtattgagta
     8821 aggtacaggc gatgttatta tctacattga tagagacaat atcacttact ggcgcccgtc
     8881 cctgataagc tacttggact attaattttt ctgtgatact aatagctgga gcttgatatt
     8941 gtacagtaaa ttgacatgtt ttgtttggac caataaatgt tccacaggtg tttccagcat
     9001 ttgataggct ggcgttattg ctggaaaata aatagctaag cggaaagcca acacttgtat
     9061 tattgcgcaa agtataaaat aacaagacag aactttgagt ttttacaaat tgagaggggt
     9121 tgggctttgc aatcaactca accaggggga tggctgccac tattttctga ttacacaagc
     9181 atgcaactaa tacaaacatt aataaataac cggtcttttt catatttggc ctgagttata
     9241 tcgagtaatt aattcctatc agtatgtttt gattgtttaa aacaagttct ataggcccaa
     9301 gggagttagg agaagtatgg actttgccca tatgaatata ggcatagcgt aagttaattg
     9361 accaattagg attgactggt accgcaaggc ctgctcccaa ttgataaatt cctttgatag
     9421 aagagtcaaa gtgatgtcgc tcacttacag gatcaatacc aggaagggca taatcgtcat
     9481 agtgaatata agcaacccca tatcctaaac cagcagtgac aaaagaaata agccaagtag
     9541 atataggatt aaaatatagg tctccttcta ttaaaaagtt aacattatta cttgtataat
     9601 catattggta attatagaac tcaggtaaca ttaattccca cacatcgcca gaataatgca
     9661 gtttttgaaa atacaatgca ggacccagca tgattttatg aatcttattg gcttcaaaat
     9721 tcaattgttg cttggcagaa attaatacgc ttgggtgagt atgtttatga gaattagtca
     9781 gtaaatcagt gacatagtga ctgattacca actgttgatc gacaggatct ttgaaatccg
     9841 tataaccaat aaggcctgat agagtcaggc tatgatcacg aaatattggt gtgccataag
     9901 aagggaccga acatattgca agaagaacta tcgaggttat tccaaatcta atgcatgtat
     9961 acacagtcgc cctttttttg ttcacaataa ttgaaaattc atacttacaa tcaagagaat
    10021 aaattatcat gaaataaaaa aataggaagt aaaatgaaga ggaaaagaca tcttttatca
    10081 tatcaagaat tcagtattaa tactctatca gtcacaacaa gtattcttct tgtagcccag
    10141 gatttttata aagtattaaa taaaatcaat tgaaacatct ttcaaagaac tttaggctac
    10201 tgcacgcaag tcgagtcgtc cccctgtttc attaatgtaa taattgtttg ccttagtcaa
    10261 tgctagtaca gatggaatgg ataatagtaa tgcgcaagcc ccttgattac ctaatcgtag
    10321 agccagacgc agtaactcat tcgcatctcc tggaatggtt gcagtaggag ccaaggcttt
    10381 tataccgggg atgctcagca aaaaacgaat atcatcgagt aatacttcat cattacgacg
    10441 gattaaattg cgtaacatat aaaaaccttg caggcattcc gactttgtga ctaaatcaaa
    10501 gacaccatcc gggttactta gcttaaaggc atcatgcatt tcttttaacc tgttcacatg
    10561 cctcgcaata aacggattga cgtacttctc tccatattca aattcgtgta tttctgcgta
    10621 agcgagcata accggacagt cgagcaaaaa attaatgaca ttatgatggc ctcttccaac
    10681 tgctgcccag cgaaaagcat aataattttc tgcctgaatc attgctgtag cttcagttgg
    10741 tgccaattca cataaacgat ttagcacatg caagtgtcca ttttctgcag ccagacgaaa
    10801 tgcatggtaa ttttctgcct ggatcatcgc catgatttca gttggcgcca attcacataa
    10861 acgatttagc acatggaggt gtccattctc tgcggccaga cgaaaagctt ggtaattttc
    10921 tgcctggatc actttcacga tctcatcaga tgttaaaaga agacataatg tatctaaggc
    10981 acttgaacaa ccggttattg cagcaacaaa acaaataacc tcgcttttta ttcctttctt
    11041 gtgagcatca ctccagagtt gtttggcatt cctgttataa tgggcatagt ataaacacaa
    11101 caattgcctc acctgttcca tattttttgt tcctggcaaa aagatatgga ttgcttcttt
    11161 atatgataaa gtcataagag ataattcatt ggcactgata aaatgctgaa ataaattttc
    11221 ccatagaatc cagggtatta atcgtaactg cggatcgttc tcatagtttt ctatattatg
    11281 aatagttaga ttacacatgg atctaaatag ataaaaaaca aactaaacaa ttataaatta
    11341 atcacaattg agctggatgg tcgaataagg ac
//
LOCUS       DACVWI010000095        11366 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.095, whole genome shotgun sequence.
ACCESSION   DACVWI010000095 DACVWI010000000
VERSION     DACVWI010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11366
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.095"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            69..1040
                     /locus_tag="JBH85_09175"
     CDS             69..1040
                     /locus_tag="JBH85_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946373.1"
                     /translation="MLKKTSLALLGLAASGYALAGTMGPVCTPGNVTVPCEAKRWDLG
                     VQALYLKPVYDADMAYRQVHVAPTRYDDDQGWDWGYRLEGSYHFNTGNDVTLTWIHYS
                     DFANPSGLVGRIDIPPLPPALAFPRLFSAIYKNRFEQVNLVMGQHADFGLVKDMRFYG
                     GLQYANIEIDNTNYYFGAFPQLGGVNLFDNTDYKGVGPVVGIDYAYALTNALSVTANG
                     AASVLYGKGKYNIGYVALPTGSSGAVVRSIYANKRTIVPSLEAKLGLNYAYNMAQGVL
                     NLEGGYQVMNYFNALHTQFLQNMANPVTNSDYGLYGPYIGAKYIGNA"
     gene            1337..2929
                     /locus_tag="JBH85_09180"
     CDS             1337..2929
                     /locus_tag="JBH85_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LbtU family siderophore porin"
                     /protein_id="HAU0946374.1"
                     /translation="MKFKKIILALACLSSPLYADQDQQLKSEIQRLQHQAEDLQAQLN
                     RLQKQLANHKSSQQKHEQQAAAKPAEPQSKPTVKSGAAIEEKYHSSKVEVHAPDAHPE
                     SISFYPTALIADNRVVTYIAGTPVVSSPFLGDRPAFDGSDYIVNISSINRDVRLMQQR
                     RRLYRAYQKIGYPIPNMPIISLSGKAEPAATFNNPFRSTNTDGDITLGSSELDVAAAL
                     NENVEAYIAIAYDESPPAIGPRVNNSAFNLNMGFVNIGNLDKSPLYFTAGQVYVPFGR
                     YSSAMVSSPVTMNLARTKTRPVIFGYKSQADTGPFGAVYGYRSDTTLGRSGVGGVNLG
                     YIFGFDNDINGEVGGGFISSIADAGGMQSTGANVGTTFGGFGSITNGNENVRKTKAAD
                     VHGHVGYDRYNLTLEWVGAIQSFRPQDLSFNGQGARPQAAQAELGMTFMAFNRPASIG
                     VGYQWTKEALALNLPKRRYVGVFNISIWKDTVESIEYRHDIDYGLTQFANGAAPQGFV
                     NLPTLGTGKSADTVSAQIGVYF"
     gene            3136..4641
                     /locus_tag="JBH85_09185"
     CDS             3136..4641
                     /locus_tag="JBH85_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nodulation protein NfeD"
                     /protein_id="HAU0946375.1"
                     /translation="MHRDCVRQEGLHKLNNFFCKLAVVKRILQGMIFKRRLSDSVHED
                     SDSVATKQSPASVTCEKGLSKLMQTSCIFIFLTLFLLIGLQTSFAAKIVELNIKGPIG
                     PATVDYMERGIKSAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIVTYVSPTGAR
                     AASAGTYLMYASTIAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTMENKVTHDAVA
                     TIRSLAQLRGRDPDFAEKAVTEGKSITANEALSKGVVNYIAKNRDDLLSQIHGIKVSQ
                     NNKTITINTESPDIQVINPDWRTRFLSVITNPTVAYLLLLLGIYGIFFELVNPGYVLP
                     GVVGAVSMLFALYALQLLPINYAGLGLIILGILFVIAEAFTPSFGALGVGGTVSFILG
                     SIMLMNTEHLAFQIAWSAIWAMAVLNILIFVLVLGMLIKSRNQKIRHGLETLVGAKGR
                     ALGDINLEGQAVIKGEIWNVHSSSPIAANKSVKVTRASGLLLEVEEDQSVY"
     gene            4660..5439
                     /locus_tag="JBH85_09190"
     CDS             4660..5439
                     /locus_tag="JBH85_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="slipin family protein"
                     /protein_id="HAU0946376.1"
                     /translation="MKGIKENEMGPFLVILLVAIGLLLASMFKVFREYERGVVFMLGR
                     FWRVKGPGLIIIIPIIQQVVRVDLRTIVMDVPSQDVISRDNVSVRVNAVVYFRVVVPE
                     NAIIQVENYFEATSQLAQTTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIK
                     VSNVEIKKVDLDESMIRAIAKQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQ
                     AMQLRYLQTLATIAVNNNSTIIFPMPMEIGDILTSMAGKKK"
     gene            5678..6244
                     /locus_tag="JBH85_09195"
     CDS             5678..6244
                     /locus_tag="JBH85_09195"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HAU0946377.1"
                     /translation="MSIKSDRWIEKMALEHGMISPFQAGQVRENQNGRIISYGVSSYG
                     YDVRCSNEFKIFTNINSAIVDPKAFDENSFVDVQSDVCIIPPNSFALARTVEYFRIPR
                     NILTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTTLPAKIYAYEGVAQMLFL
                     EANEVCAVSYRDRNGKYQGQTGVTLPRT"
     gene            complement(6260..6571)
                     /locus_tag="JBH85_09200"
     CDS             complement(6260..6571)
                     /locus_tag="JBH85_09200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HAU0946378.1"
                     /translation="MIKSELIEHIAARMTHLTEKQVADGINRILELMSEALIHGQRIE
                     IRGFGSFSLHYRPPRNAHNPKTGEKVVTEAKYSPHFKPGKELRERVNSSRAKFPLLDK
                     D"
     gene            complement(6824..7540)
                     /locus_tag="JBH85_09205"
     CDS             complement(6824..7540)
                     /locus_tag="JBH85_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HAU0946379.1"
                     /translation="MLDFISSKTLFLCLILFLILFWLCFDKARKELRINRWQKKLNLK
                     HHAQIFHLLYGDVNGFMISQQARKNRDAIEYVYGEIEFLPFTALLSMVNIDHNTVFYD
                     LGSGTGKAVVACAMVYPVHKSVGIELFPNLHQCACERLQKLAAMEGYTESSKKVSFIL
                     GDFLTVDLSEATLIFINSSTLFGATWEALNTRLNSLPQLSTVITTSKTLSSSRFKLVT
                     RAKIQMSWGVVFAFIHKKEN"
     gene            complement(7545..8270)
                     /locus_tag="JBH85_09210"
     CDS             complement(7545..8270)
                     /locus_tag="JBH85_09210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946380.1"
                     /translation="MEHYQEDDLARIKELLRHTGEFIAYFEFVEAKMMEWREEIEQQA
                     GRVLHIAQSLQNELTSMQNLISQSGVTHFKISAEKALAQGETHLHSLERTCNQFTQIF
                     QQQQERLNALTENCIDRIERHTGQATQTLTMQLSKYDVQHFHRIANESCDHVDRVAND
                     AINKSNKMLNMLQFKVGLFAMLITVLTAFVIVIYLNDEMPWEMHHQAMSERQAGKVLL
                     QAWPKLSQKEKAKILNEDGLKPG"
     gene            8855..9898
                     /locus_tag="JBH85_09215"
     CDS             8855..9898
                     /locus_tag="JBH85_09215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946381.1"
                     /translation="MPRARFFKAETNSSQVQQSFINVGGEQFHAAAVALIDYFKRSPR
                     INDDTLKKILERFYFHFPKYIPSQPYLTPSERMSMLINGARKSEIVECFAYVLRQLAI
                     DEIYAKPLNYRDIFAEFDRDTPKSLLRQPSTPLPASALRALSHVIGTNITLSVVENGK
                     ELRKREVYVGDNLNSAKPGITIQVQQNNRYFPAVKNKGDFVYVGQLAVSPPKPVESSN
                     TSGKDTIADMVDLIASDNKKLLQTYKQWHQNFLTMLKLGEITTQRMINLYIKFLPSEK
                     GLVVDSAEFFSRLSEDSDKPVIPDYSGENKDGVNQLLASALAGWISARQVDVDQLFDH
                     LENRPSSVSMSVG"
     gene            complement(9993..10943)
                     /locus_tag="JBH85_09220"
     CDS             complement(9993..10943)
                     /locus_tag="JBH85_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HAU0946382.1"
                     /translation="MIYPNILATIGHTPVVKINRLGKDLECELYAKCEFFNPGGSVKD
                     RIGYEMVVKAEKEGRIKPGDTLIEPTSGNTGIGIALAGAVLGYKVIITMPEKMSQEKQ
                     SVLERLGAIIYRTPTEAAYNDPDSHISLAKKLQAEIPNSHILDQYANPNNPNAHYFGT
                     AQEIIDDFGKDLHMVVAGVGTGGTITGIAKRLKEFNPAIKIIGADPEGSILGGGTEIK
                     SYHVEGIGYDFFPDVLDNTLIDAYIKTNDADSFRTARRLIKEEGLLIGGSCGAAMWAA
                     LQAAKSLSKGQKCLVILPDSIRNYMSKFANDEWMKEMGFL"
BASE COUNT         3332 a         2122 c         2422 g         3490 t
ORIGIN      
        1 ttaagtaatt aagttctttt tgagcccatc accaaaatga tgggcttttt ttttgaaatg
       61 gagtccatat gttgaaaaag acaagtttag ccctattggg attggctgca agtggttatg
      121 cattggcagg aactatggga cctgtttgta cgcctggtaa tgtcactgtt ccctgtgaag
      181 caaaacgttg ggatttaggt gtgcaggcac tctatctaaa accagtttat gatgccgata
      241 tggcttatag acaagttcac gtagccccta caagatatga tgatgatcag ggttgggatt
      301 ggggataccg attagagggt tcttatcact ttaatactgg taatgatgtg actcttacat
      361 ggattcacta cagtgatttt gcaaatccta gcggtcttgt cgggcgaatt gatatccctc
      421 cattgccgcc tgcattagcg ttcccacggt tatttagcgc aatatacaaa aacagatttg
      481 agcaagtgaa cctggtgatg gggcaacatg ctgattttgg cttggtgaag gatatgcgat
      541 tctatggtgg tttacagtac gccaatattg aaattgataa tacgaactat tattttggtg
      601 cgtttcctca gctaggcgga gtcaacctat tcgataatac tgattataaa ggggtaggac
      661 ctgttgtagg aatcgattat gcctatgccc taaccaatgc attgagtgtc actgcgaatg
      721 gagcggcttc agttctatac ggtaagggta aatacaacat cggctatgtt gcattgccta
      781 caggctcttc tggcgcagta gtgcgatcca tctatgcaaa taaaagaacg atagttccca
      841 gtctggaagc taagcttgga ttaaattatg cttacaatat ggcccaagga gtattaaatc
      901 ttgagggtgg ttatcaggta atgaactatt ttaatgccct gcatacacaa ttcctgcaaa
      961 acatggcaaa cccagtaacc aatagtgatt atggactcta tggaccatat attggcgcaa
     1021 aatatattgg taatgcctaa acgaagtcct ttacttaaat gcgttcgtca tcgacgaacg
     1081 cattgcttta aaatactgct taaaaatctt gaaaaaaatt ctttaacaaa aaatataatc
     1141 acggtaatcc attctaagtt taaccaacta aacccctaat ttattgatgt atagacaata
     1201 aactataaat gcatacaaat aaatcaattt attttaaatt ttagcggagt gatcctatag
     1261 ccagccagta attgccgcgc tataatccgg tggctatccg tttaggatgt aaaaataata
     1321 aacaggagta ccccgcatga agtttaaaaa aattattttg gccctcgctt gtttatcatc
     1381 gccattatat gcggatcaag atcaacaact gaaaagtgaa attcaacgat tacagcatca
     1441 agcagaagat ttacaagccc aactcaaccg attacaaaaa caattagcaa atcataaaag
     1501 ctctcagcaa aagcacgagc aacaggccgc cgcaaagcct gcagaaccac agagtaagcc
     1561 gacggttaaa tcaggggctg caatagaaga aaaatatcac tcatccaaag tcgaagtcca
     1621 tgcgcctgat gcccacccag agtcaataag cttttatcca acagcattga tagccgataa
     1681 ccgagtggtt acttatatag cagggactcc tgtagtaagc tcgccattcc taggagaccg
     1741 gcctgcgttt gatggctctg attatatagt aaacatttcc agtattaacc gagatgtacg
     1801 tttaatgcag cagcgacgcc gtttatacag agcctaccaa aaaataggct accctatccc
     1861 taatatgcca attatttcat taagtggtaa ggcagaacca gcagcgacat ttaataatcc
     1921 atttcgatca actaatacgg atggtgatat cacgctaggc tcaagtgagc tggacgttgc
     1981 tgctgcattg aatgaaaatg tcgaagctta tattgcaatt gcctatgatg aaagccctcc
     2041 cgcaattggc ccgcgggtta ataactcggc atttaatttg aatatgggat tcgtgaacat
     2101 tggtaatttg gataagagcc cgttgtattt tacagcagga caagtctatg ttccttttgg
     2161 ccgttattcc agtgcaatgg tcagttcccc tgtgacaatg aatttagcaa ggaccaaaac
     2221 aaggcctgtc atttttggct ataagtctca ggctgatacc ggtccttttg gcgctgtcta
     2281 tggctacaga agtgatacca cattgggtcg ctcaggagtc ggaggcgtta atttagggta
     2341 tattttcgga tttgataatg acatcaatgg tgaggtaggg ggcggtttca ttagctctat
     2401 tgcagatgcc ggcggtatgc aaagcacagg cgccaacgta ggaacaacgt ttggtggttt
     2461 tggctccata acaaacggta atgaaaacgt tcgaaaaaca aaagcagctg atgtccacgg
     2521 tcacgtaggg tatgatcgtt ataatctgac tttggaatgg gttggtgcca tacaaagttt
     2581 tagaccccag gatttaagtt ttaatggcca aggtgccaga ccccaagctg cccaagcaga
     2641 actcggtatg acttttatgg cttttaacag accagcctcc ataggagttg gttatcagtg
     2701 gacaaaagaa gcattagcac tgaatctacc taaacgacgc tatgtcggag tgtttaacat
     2761 ttccatttgg aaagacacag tcgagagtat tgagtacagg catgatattg attatggact
     2821 tactcagttc gctaatggtg ctgcacctca aggttttgtt aatcttccga ctttgggtac
     2881 aggaaaatct gccgatactg tttcagccca aattggtgtt tatttctaaa ttatttccat
     2941 tcaaatagca ggcttgtaac aattcaatcg gttacaagct gatgtgttta gggggctgct
     3001 tacaccggat gcggggtaag tatcctgccc agttcaactc actttgataa tactgaattg
     3061 acgtgaccag cccctttgtt tttttcaacc tgtgctatct tttattttat aactacctct
     3121 taaagggatg taaaaatgca tcgggattgc gtcaggcaag agggactgca caaactcaat
     3181 aattttttct gcaaattggc tgtggtaaaa agaattttgc aaggaatgat attcaaaaga
     3241 agactatctg attcagttca tgaggattca gattctgttg caacaaaaca atccccagcc
     3301 tcagtaacgt gtgaaaaggg actgagtaaa ttaatgcaaa caagctgtat ttttatattc
     3361 cttaccttgt tccttttgat tggattgcaa acttcatttg cagcaaaaat tgtagaattg
     3421 aatataaaag gaccaattgg gcctgctaca gtagattata tggaaagagg tattaaaagc
     3481 gctcaagatg ctgatttgat agtgatttta atcgatacac caggtggttt atatgattca
     3541 acacgaaata tcattcagtt atttttactt tctgatgtgc ccatagtgac ttatgtaagt
     3601 cctactggag caagggctgc gagtgcagga acttatttaa tgtatgcgag tacaatagcg
     3661 gctatggcac ctggcactca aatgggggct gcaagtcctg tcagccttgg cacaggattc
     3721 agtgaaggtg aaaaagatga gaaaaaaaaa tcaaccatgg aaaataaggt aactcatgat
     3781 gctgtcgcta caataaggtc acttgctcaa ctaagaggac gcgatcctga ttttgctgaa
     3841 aaggcagtga cagaaggtaa atccataaca gcgaatgaag ccctcagcaa gggagtggtc
     3901 aattatattg caaaaaatag agatgattta ttgtctcaaa tccatggaat aaaagtcagt
     3961 caaaataaca agacaataac tattaatacc gaaagccctg acattcaagt aatcaatcca
     4021 gattggagaa cccgctttct atcagtcatt accaacccta cagtggctta tttattattg
     4081 ctacttggaa tttatggaat tttctttgaa ttggtgaatc caggttatgt tttacctgga
     4141 gtggttggcg cagtttcaat gctttttgcg ctgtatgcgc tgcagctgtt gcctataaac
     4201 tacgcgggtt tgggcttgat tattttaggt attttatttg tcatagccga ggcatttacc
     4261 ccaagttttg gagcgttagg tgtaggagga actgtttctt ttattttggg ttccattatg
     4321 ctgatgaaca cggagcacct ggcttttcag atagcgtggt cagcaatttg ggctatggca
     4381 gttctgaata tattgatttt tgttttggtt ctggggatgt taattaaatc tcgaaaccaa
     4441 aaaataagac atggcctgga aacgttggtg ggtgcaaaag gcagagcgtt aggagacatt
     4501 aatctggaag gccaggctgt aattaaggga gagatttgga atgtccattc aagctcgccc
     4561 attgcggcaa ataaaagtgt taaagtcacg cgagcatcag gattattgtt ggaagtggag
     4621 gaagatcagt cggtttatta gttggttatt ccatgttgaa tgaaagggat taaggagaat
     4681 gagatgggac catttctggt tatattactg gtagcgatag gcttgctact ggcttcaatg
     4741 ttcaaggtat ttcgggaata tgagcgtggg gtggttttta tgctgggtcg gttttggcgc
     4801 gttaaaggtc cgggattgat aatcattatc ccaattattc aacaagtggt acgtgttgat
     4861 ttgcgaacca tagtcatgga tgtacccagt caagatgtta tctcaagaga taacgtttct
     4921 gtacgcgtca atgctgtggt gtattttcgc gttgttgttc ctgaaaatgc aatcatccag
     4981 gtagaaaatt attttgaagc aaccagccaa ttggcgcaaa ccacattgcg atcagtatta
     5041 ggtcaacatg atttggatga tatgttggct gaacgtgagc aactgaatag tgatgtgcaa
     5101 aaaattcttg atgcccaaac agaaagctgg ggaatcaaag tttcaaatgt tgaaatcaag
     5161 aaggtggatt tggatgaaag tatgataagg gcaatagcca aacaggctga agcggaaaga
     5221 gacaggagag cgaaagtcat ccatgcggag ggagagctgc aagcttcgga aaagttatta
     5281 caagcctctc aagtactagc ccagcaaccc caggcaatgc agctaagata tttgcaaact
     5341 ttagccacta tagcggttaa taacaattca acgataattt tccctatgcc aatggagata
     5401 ggtgatatat taacttccat ggccggcaag aaaaaataga ccttgaacag tggcataagc
     5461 cccaaatata cctaagtgta tagagtgctg ccattggata tgagaatatg gtgatgagtt
     5521 tttttattcc acaacaggtt gtggtatcag tattttttta aaatgagggc ttttatcgaa
     5581 gtttcaatca tcttattctg tataatttcc caaaacaaac tttcgtttca ttgactttta
     5641 tgatagaaat ctatcttttt aagaaaagag gaatatcgtg tcaatcaaat cagacagatg
     5701 gatagagaaa atggcccttg agcatgggat gatttctcca tttcaggccg gtcaagtgcg
     5761 agaaaaccaa aatggtagga ttatttctta tggcgtctcc agttatgggt atgatgttcg
     5821 ctgttcgaat gaattcaaga tttttacgaa tattaattca gcgattgttg atcccaaggc
     5881 gtttgatgaa aatagctttg tagatgttca gtctgatgtc tgcattattc cccccaactc
     5941 gtttgccttg gcaagaactg tcgaatattt tcgtataccc cgcaatatat taacgatatg
     6001 cttaggtaaa tccacttacg ctcgttgcgg gattatagtg aatgttactc ctctggaacc
     6061 ggaatgggag gggcatgtta ctctcgagtt ctccaatacg accactttgc cagccaagat
     6121 ttatgcgtat gagggagttg ctcaaatgct gtttttagag gctaatgagg tttgtgctgt
     6181 ttcttatcgt gatcgaaacg gaaagtacca gggacaaacc ggggttacac taccacgcac
     6241 ttaggatgaa aaataaaatt taatctttat ccaaaagtgg gaacttggct cgcgacgaat
     6301 tgactcgctc tcgtaattcc tttccaggtt taaagtgagg actgtatttt gcctctgtta
     6361 ctactttttc acccgtttta ggattatgag catttcgcgg tggtcggtaa tgaagagaaa
     6421 aactgccaaa gccacgaatt tctattcttt ggccatggat aagtgcttca ctcattaatt
     6481 caagtattct gttgatgcca tcggctactt gcttttcagt aagatgcgtc attcgagcag
     6541 cgatgtgttc aatgagttcg gatttaatca tatactcacc tcgttttgtc gcgtatttaa
     6601 tagaccgatt gcatcctcta ttattttagc ttggttgcct atgtttctat tcgctttgta
     6661 tcttgaaaca cgggtggccg atactaaaat aaactccacg agctgagcaa ctggcctaat
     6721 gtctgctacc aagacacatc aggcgctgac aatttcccat ttgattttat aagtatagtt
     6781 cgggtaaaaa attattcaat gttttcaagc tggttagtaa aaattagttt tctttcttat
     6841 gaatgaatgc gaaaactaca ccccaactca tttgtatttt agcgcgagta actaatttaa
     6901 aacgactgga tgataaggtt ttgctagtag taatgacggt tgaaagttgt ggcaggctat
     6961 tgagacgggt gttaagggct tcccaggttg caccgaataa ggtacttgaa ttaataaata
     7021 ttaaggtcgc ctcagataaa tcaacggtta gaaaatcacc caatataaat gagacttttt
     7081 tgctgctctc tgtatagcct tccatagccg ccaatttctg gagacgctcg caagcacatt
     7141 gatgtaagtt agggaacaat tcgataccta cacttttatg gactggatat accatagcgc
     7201 aggcgacaac agccttacca gttccagagc caagatcata aaaaacagta ttgtgatcaa
     7261 tattgaccat tgataataaa gcagtgaacg gtaaaaactc aatttcccca tacacatatt
     7321 ctattgcatc tcgattcttt cttgcttgtt gggaaatcat gaagccatta acatcaccgt
     7381 acaggagatg aaaaatttga gcatgatgct ttaaatttag ttttttttgc catcggttaa
     7441 tgcgcaactc ttttcttgcc ttatcaaaac aaagccaaaa aagaatgaga aacagaataa
     7501 ggcataaaaa aagcgttttt gacgatatga aatcaagcac agtattatcc tggtttcaga
     7561 ccatcttcat tcaagatttt tgccttttcc ttttgactta attttggcca tgcttgaaga
     7621 agaactttac cagcctggcg ttcactcatg gcttggtgat gcatttccca aggcatttca
     7681 tcattaaggt aaatgactat cacgaaggca gtgagtacgg tgattaacat ggcaaaaaga
     7741 cctactttga attgaagcat attaagcatt ttattgcttt tgtttatggc atcgtttgca
     7801 actcggtcga catggtcaca gctttcgtta gcgatgcgat gaaagtgttg aacatcgtat
     7861 ttagatagtt gcatagtcag tgtttgagtt gcttgaccag tatgcctttc gattctatca
     7921 atgcagtttt ctgttagggc attgagcctt tcttgttgtt gttggaagat ttgggtaaat
     7981 tgattgcaag ttctttctaa agaatgtaaa tgtgtttcgc cttgagccag tgccttttca
     8041 gcacttattt taaaatgggt tactcctgat tgagaaataa ggttttgcat tgaagttaat
     8101 tcattttgta gtgattgagc gatatgtaga actcgcccag cctgttgctc aatttcctct
     8161 cgccattcca tcattttcgc ttcgacaaac tcaaaatagg caataaattc tccagtatgt
     8221 ctcagcaact ctttaatgcg agccaagtca tcttcctgat aatgctccat gcctctctcc
     8281 ttactaaatt catagtcaga gaatcttcaa atagacctct cgcataatct atccttttca
     8341 ttttattgcc gcgttgcaaa cgtttctatg tttgcacttt gcctaaaaca aaataatcag
     8401 tttatacaag agagctaata atatcctttg atgcatcttg cctctttggc tgtgaattta
     8461 gaattatgat gttccatatt atattatatc cataacttta ttttggaaac ggcaattttt
     8521 gcctaaaatt ctcactcaat tttcgttatt agttccataa attctagatg ggtacagtat
     8581 agtcatgcct cataaagttg gcattattta tgcttgaatg taatatactc ggcatatact
     8641 ttctttatta ttaaaatcca ctgagacgag ttgtcggttt gcagaaataa tcgaagctca
     8701 atggcattat atgaaaatga gcggtggttt aaaaatgatg tggtcaagag aaacgccctg
     8761 cgttaaaagt ttcagtagac tgtaaaaact ttgttaatat ttccttaatc tggattgatt
     8821 agaatgaaga tataagttgg gataggagaa cattatgcca agagctaggt tctttaaagc
     8881 agaaactaat agttcgcaag tacagcaaag ctttattaat gtgggcggag agcagtttca
     8941 tgcggctgca gttgctttaa ttgattattt taagagatcc ccacgcatta atgatgatac
     9001 tttgaaaaaa atactggagc gtttctactt tcattttcca aaatacattc ccagccaacc
     9061 ttatttgacc ccctccgaac gcatgagtat gttgattaat ggggcacgga agtcagaaat
     9121 tgtcgaatgt tttgcttatg tattacgcca attggctata gatgagattt atgcaaaacc
     9181 tctcaattat cgtgatatct ttgctgaatt cgaccgcgac acgccaaaat cattgttacg
     9241 tcaaccatct actcctctcc cagccagtgc tttgagagcc ctttctcatg taattggtac
     9301 aaacatcact ttatctgttg tggaaaatgg caaggaattg aggaaacgtg aagtgtatgt
     9361 tggggataat ctgaatagtg caaaacccgg gataaccatt caggtccagc aaaataacag
     9421 gtatttccct gccgtgaaaa ataaaggtga ttttgtttat gtagggcaat tggcagtaag
     9481 cccccccaaa ccagtagaaa gctccaatac aagtgggaaa gatactatcg ctgatatggt
     9541 tgatttaatt gcgtctgata ataaaaaatt attacagacc tataaacaat ggcatcagaa
     9601 cttcctaacc atgcttaaat taggcgaaat aacaacccag aggatgatca atctttacat
     9661 caagttttta ccttcagaaa aaggcttagt tgttgactca gcagaatttt tttccaggtt
     9721 atcagaagat tctgacaagc cggttattcc tgattattcc ggtgaaaaca aggatggagt
     9781 caatcagtta ttggcttctg cgctggctgg atggattagt gccagacagg tcgatgttga
     9841 tcaattgttt gatcatttag aaaatcgacc ttcttcagta tccatgtctg ttggttaaag
     9901 tgtgttggca atccggatca ttttttcaaa gcggattgtc aacgatcatt ttttgatgaa
     9961 atagcaatac gatagttttt tatggctttc aattaaagaa agcccatttc tttcatccat
    10021 tcatcattgg caaatttgga catgtaatta cggatagagt cgggtaaaat caccagacat
    10081 ttttgtcctt tgcttaagga tttggctgct tgcaatgcgg cccacatcgc tgctccacat
    10141 gagccgccaa ttaacagtcc ttcttcttta atgaggcgtc tggcagtacg gaaagaatcc
    10201 gcatcattgg tttttatgta ggcatcaatc aacgtattat ccagcacatc agggaagaaa
    10261 tcataaccta tcccttcaac atgataagat ttgatttctg tgccgccacc gagaattgag
    10321 ccttcgggat ctgctccaat gattttgatg gcagggttaa attctttaag gcgtttggca
    10381 atgcctgtaa ttgttccgcc tgtcccaacg ccagcaacaa ccatatgtaa atcttttccg
    10441 aagtcgtcaa taatttcctg agcggtccca aaataatggg cattggggtt attggggttc
    10501 gcgtattgat caaggatatg ggagttaggg atttcagctt gtaatttttt agccagagaa
    10561 atatgactgt ctggatcatt atacgccgct tctgttggcg ttcgataaat gatggctccc
    10621 aggcgttcga gcacggattg cttttcctgg ctcatttttt ctggcatggt aataatcact
    10681 ttgtagccta atacagcgcc tgccagggct atacctatgc cggtgttccc ggaagtaggc
    10741 tcgatcaagg tatctcccgg tttaattctc ccttcctttt ctgcttttac taccatttca
    10801 tagccaatac gatcttttac ggagccgcca ggattaaaga attcgcattt ggcatacagc
    10861 tcacattcca gatcttttcc aagcctgtta atttttacaa cgggagtatg gcctatagtg
    10921 gccaggatgt tagggtaaat catggtagtc ctttgtcatg gtgaaatgag ttgattataa
    10981 gcggataagg taaaatagca aaatggtggt ttctacaatc aagttatttt ctcttattaa
    11041 cgggagttat agataagggt tatataagaa gcaatcgata tccagtattc gtttgggctg
    11101 aggagatgcg taagcatcgt ctcgaagcct tggtaccaaa catcaaattt caggcaaggc
    11161 ttcaagacag cctaaatgcc tcgtcagccc gaacgataca agataatgac ctatattaat
    11221 ccataactcg cgtttattgg aaagaaatgc aaatcatctt ggcagtttat atttgtgata
    11281 tcctccttat taatgcaggg atacttcgtt tttatggtta tttctccttt tttacattat
    11341 atttattgtg ggcgttggtt attttt
//
LOCUS       DACVWI010000096        11366 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.096, whole genome shotgun sequence.
ACCESSION   DACVWI010000096 DACVWI010000000
VERSION     DACVWI010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11366
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.096"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            208..2649
                     /locus_tag="JBH85_09225"
     CDS             208..2649
                     /locus_tag="JBH85_09225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein FimV"
                     /protein_id="HAU0946383.1"
                     /translation="MKKTVLHAAIFSLTMPISLYALGLGEMKVQSSLDQPFSAEIELI
                     DVGADPLASIKVSLADPEQFEQIGLERTAVLSLLRFQVERNPKGTPVVKVSSTERMTE
                     PYMEIVVDLTWPKGQLYKAYTVLLDPPGYQLGITTAQSRPVYYKKKSASYSNEPGVIE
                     KTVITTVEHGPASRSDRKKKTTYGPTVTNENVWQIAQRYKTSKLILPQVVLAIVGANP
                     EAFKDGNLNGLKVGVRLVIPSTEEIAKVPSDLAIEEVMAHDKAWNEHTSINHVLAPPY
                     INSSIVDVTPKQTKASSIPVIPKFTIGENSNIPTLQQLVPDSTSVSIDTSTQQQPVQN
                     NNIVQTTEQNEKIKAEISITTAAVESVREANALLMEQLRILQEQNKKLQEKLDKREKE
                     IELMRTQVQTMLKERKAIASQVSSLPNNEQGMNLWPYIILLIFAAGGAGFVYWYLRQR
                     QHREDISPYKTDSDSSPKPFMPLVEPSKYEPDTQADDKETSVQEKVSDSEKETGVGVS
                     KADWTEYQPKEMDKIEKADAVESETVEDVTYLGSTEQLRAKEYTELESEVQTKPEAQA
                     EPEVQAGENQIMFEPVMEPEQFDVNRDDEVDNSQLSEDKTQQTEGHQSSEMIEFESGL
                     HELIKDKPKTKITESTDEGDDNGIDFIPLTINEADKTLKHEQEIEKSDKKEDKKSEKF
                     STKENKLDLDNSDFDMKNLESEPEISQEEKEAHISEITEFDQKSTQEEKTEKGISTSQ
                     SVDKATFTKSSGENNETSSPLKSKKALDTLLDLAKTYISMGDIETARSSLEEVIEHGS
                     ANQKEQARQLLEQLK"
     gene            complement(2703..3170)
                     /locus_tag="JBH85_09230"
     CDS             complement(2703..3170)
                     /locus_tag="JBH85_09230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 domain-containing protein"
                     /protein_id="HAU0946384.1"
                     /translation="MLYFYLKFIHVLSSTILFGTGIGTASVMIYGHRTKNPIVIAAIS
                     KYVVFADWIFTGTSGILQPLTGFAMIYLAGFSWTSLWILGSILGYVVAACCWFPVVCL
                     QIKMRDLAIETVKNNTTLPEKYHRYFLYWFILGWPAFLSLIGVFYLMTNKPVF"
     gene            complement(3170..4468)
                     /locus_tag="JBH85_09235"
     CDS             complement(3170..4468)
                     /locus_tag="JBH85_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HAU0946385.1"
                     /translation="MKILVTGASGFIASQFVTDLLIAGHEIICCVRNTKHTQRIFPGA
                     QVIFCDFINDTKPEIWSKRLQGIDVVINCVGILYHPDERIIWNVHYETPKALFDACIN
                     SGVKKIIQISALGIDKVDVSYATSKKAIDDYLLTLSIPSVIVRPSYVYGKGSYGGSSL
                     FRGIAGTPFFTAIPGQGTQKFQPISLNDLSQAIVRLVSTPVTETIILHAVSKKIITLE
                     EIIIKLRSWLGFTKTRIIHIPLTFIRLLTRLGDLLPYSTINTVSYKMLASDNITTQEE
                     TQRFANYVNFTPRDYEEGLYSQPSSVQDHWHAQLYFLKLPLRLGISFVWIWTALCCLF
                     FYPKSDSLTLFAQIGFSSLWQLFLFYASALWDGLLGIAMLFNYRFKLTSILQLITILV
                     YTVIITIKLPYLWLDPFAPIAKNIPLLIAILIGLGLESDK"
     gene            4712..5500
                     /gene="truA"
                     /locus_tag="JBH85_09240"
     CDS             4712..5500
                     /gene="truA"
                     /locus_tag="JBH85_09240"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HAU0946386.1"
                     /translation="MRIALVVEYDGSQYHGWQAQTGLHTIQQAVEFALSKVADSSISV
                     VCAGRTDTGVHATNQVIHFDCEKDRSIRAWIHGANTFLPKDICVKWGKEMPENFHARY
                     SAVSRRYRYVIYNGAIRPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVEC
                     QSNTPMRNIHQLQVTRHGDLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDV
                     LNAKDRKLGAETAPSYGLYLVQVTYPKEFGLLQNNPGPLFLWEK"
     gene            5501..6124
                     /locus_tag="JBH85_09245"
     CDS             5501..6124
                     /locus_tag="JBH85_09245"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HAU0946387.1"
                     /translation="MNPSRIRIKMCGMTRSEDIQYAIDLGVDAIGLIFYPKSVRNVSL
                     EKARIIVNNIPPFVDIVAVLVNPEQSFVQLIINEIPVQLLQFHGEESSEFCRQFNKPF
                     IKAIHPKTAIQIQSAVDEFFDASAILLDTPSDKERGGTGLTFDWNIIPENLSKPYILA
                     GGLNESNILEAITMCHPYAVDVCSGIEASPGVKDHLKMSRFIKAIWG"
     gene            6126..7325
                     /gene="trpB"
                     /locus_tag="JBH85_09250"
     CDS             6126..7325
                     /gene="trpB"
                     /locus_tag="JBH85_09250"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HAU0946388.1"
                     /translation="MIKKELPDEFGHFGPYGGMFVADTLVHALKQLEHAYTKYRNDQD
                     FLSELHTELKDYVGRPNPLYHAVHLSKKIGGAQIYLKREDLNHTGAHKINNTIGQALL
                     AKRMGKTRVIAETGAGQHGVATATVAAKFGFQCVVYMGSEDIKRQSSNVYRMKLLGAE
                     VVPVTSGSKTLKDALNEALRDWVSHVDDTFYIIGTVAGPHPYPQMVRDFQAIIGVEAR
                     AQHMEKTGHLPDALVACVGGGSNAIGLFYPFLNDQSVMIYGVEAGGKGIETGEHSASL
                     IAGKPGVLHGNRTYLLCDEYGQVKDTHSVSAGLDYPGVGPEHAYLKDTGRVIYKAIND
                     SEAMDAFRLLTHTEGIIPALESSHAVAYAIQLAKTMSKEQSIIVNLSGRGDKDMHTVA
                     AIDGITI"
     gene            7351..8169
                     /locus_tag="JBH85_09255"
     CDS             7351..8169
                     /locus_tag="JBH85_09255"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HAU0946389.1"
                     /translation="MNRIDKTLEKLKANRKKMLSPYITAGDPYPELTVSLMHQLVKSG
                     ADVLELGIPFSDPMAEGPVIQRAMERALAHSIHCDDVLNMVRQFRKTDTETPVILMGY
                     LNPIEQYGYDLFAQQAVEAGVDGTILVDLPPEEADGVSRVWQKHGLYSIYLCSPTTSA
                     ERMNYINQHANGYLYYVSLKGVTGSDALKLPELKAQYLQRKAQSKLPLMVGFGIKTPE
                     MAAQVAEFADGVIVGAALINEIIEAYEAKKDPLQASGALLSSMRQAIDNIGSMV"
     gene            8166..9821
                     /locus_tag="JBH85_09260"
     CDS             8166..9821
                     /locus_tag="JBH85_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HAU0946390.1"
                     /translation="MTEQTEKRAHFIRQLIIDDLANGKHQGIVTRFPPEPNGYLHVGH
                     AKSICLNFGLAEEFKGKCFLRFDDTNPIKEEEEYVNAIIDDVRWLGFEWCAMTHSSDY
                     YHELYELAIYLIKKDMAYVDSLSMEEIRAFRGTLQEPGRESPYRNRTIEENLDLFARM
                     KAGEFPDGTHVLRAKIDMKSGNLNMRDPVLYRIRHARHQRTGDEWCIYPMYDYAHPIS
                     DALEKITHSLCTLEFQDHRPLYDWLVDNLPLPAKPVQTEFARLNLSHTVTSKRKLREL
                     VEKKIVTGWDDPRLPTLRGMRKRGYPPAAIRQFCEIIGISRSDSVIDMSLLEECVRAE
                     FNKTAKRALCVMDPLKVVIVNYPENKVEQLQAAFYPQNPESASRNLPFSREIYIEKSD
                     FMENPPNKYFRLSPGAEVRLRHAYVIKCQEVIRNDQGEITELHCTYDENTLGKNPEDR
                     KVKGVIHWVSSSHAYPVTIYQYDRLFTDPNPAREEDYFQFLNHNSLQTLQGFCEPAMA
                     EQAEGDVFQFERLGYYCVNSVAEGCVQAFHRVVDLKDTWGKVS"
     gene            9831..11201
                     /locus_tag="JBH85_09265"
     CDS             9831..11201
                     /locus_tag="JBH85_09265"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HAU0946391.1"
                     /translation="MLHLYNSLTRKKEPFVSLKPGTIGMYVCGITVYDHCHLGHARSM
                     VAFDVMVRYLRSQGFDVTYVRNITDIDDKIIARASERGVSIDELTAQYIDAMNNDTHA
                     LNILPPDHEPRATGHIETIIRLIQRLLEKGNAYVSENGDVCYEVDTFPEYGKLSHKDI
                     EGLVSGSRVEIVKEKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELG
                     EQFDIHGGGLDLQFPHHENEIAQSEAATGKPFANYWLHVGMLQVNGEKMAKSIGNFYT
                     IADVLKEHHPEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTEDSK
                     LDEYWQVQFNQAMNDDFNTPVALSVLFQLAHEVNKSNSPALAHTLKNLAGILGFLQKD
                     PESFLQSGLAEEEKLVIEQLIAERLQARAERNWAKADQIRADLLSKGIELEDGATGTT
                     WRRIAE"
BASE COUNT         3713 a         1996 c         2408 g         3249 t
ORIGIN      
        1 ttatgaattt tcctggttgg attttaaaag gccacaattg atttgccttg ttaaattagt
       61 tgaaatatgt gatgtaattt tatacatcat cttatgattt ttagggaata atttcgtgtt
      121 ttcttgaata gactaaagga taatgatact ttttacttag gtaattaaat catcaacatc
      181 ttgtatcaca ggtgcatgga gctctgattg aaaaaaactg ttctgcatgc ggctatattc
      241 tcattgacta tgccaatatc tctttatgcg cttggcttag gtgaaatgaa ggtacagtcc
      301 tcattggatc agcctttttc agccgaaatc gaattaatag atgtaggagc agatcctctt
      361 gccagtatca aggtgagtct ggctgatccg gagcaatttg aacaaattgg acttgagcga
      421 actgcggtct tgtctttgtt acggtttcag gttgagagaa acccaaaagg tactcctgtt
      481 gtaaaagtat cgtctacaga aagaatgaca gaaccgtata tggaaattgt cgtcgatcta
      541 acctggccaa aaggtcaatt atacaaggcc tatacagtat tattagaccc gccaggatat
      601 caattgggaa ttaccaccgc tcaaagcagg ccagtttatt acaagaagaa atccgcaagt
      661 tacagtaatg agcctggtgt tattgaaaag actgtgatta ctacagtgga gcatggccct
      721 gcatcaagaa gtgacagaaa aaagaaaacg acttatggcc caactgtaac gaatgaaaac
      781 gtttggcaaa ttgctcaaag atataaaact tcaaaattga ttttgcctca ggttgtatta
      841 gcaatagttg gcgcgaatcc cgaagcattt aaggatggaa atttaaacgg tttaaaagtt
      901 ggcgttcggc tagttattcc atcaactgaa gaaattgcaa aagtaccttc tgatttggct
      961 attgaagagg tgatggctca cgacaaagcc tggaatgaac atacatctat taatcatgta
     1021 ttagctccgc catacatcaa tagttcaata gtggatgtga ctccaaaaca gactaaagct
     1081 tcttcaatcc cggtaattcc aaagtttact attggagaaa actctaacat tccgacactt
     1141 caacaattag tccccgatag cacttcagtt tcgatagata catctaccca acagcaacct
     1201 gtacaaaaca acaatatagt acagacaaca gaacaaaatg aaaaaattaa ggcagaaatt
     1261 tcaattacaa cagcagcagt tgaatcagtt cgggaagcaa atgcattatt gatggaacaa
     1321 ttacgaattc tgcaagagca aaataaaaaa ttgcaggaaa agctggataa gcgtgagaaa
     1381 gaaatagagt taatgcgtac gcaggttcaa accatgttga aggagcgtaa agccatcgcg
     1441 tctcaagtca gttcacttcc caataatgaa caagggatga acctttggcc gtatatcatt
     1501 ttattgatat ttgctgcagg aggagcagga tttgtttatt ggtacctcag acaacgccaa
     1561 cacagagagg atatttctcc ttacaaaaca gattctgatt caagtccgaa gccatttatg
     1621 cctttagttg agccatcgaa atacgaacca gatacccagg ctgatgataa ggaaacttcc
     1681 gtccaggaaa aagtatctga cagtgaaaaa gaaactggag ttggtgtttc taaagcggat
     1741 tggactgagt atcaacctaa agaaatggat aaaatcgaaa aagctgatgc agtagaatct
     1801 gaaacagttg aggatgtgac atatcttgga agtacagaac agttaagagc aaaagaatat
     1861 acagaattag aatcagaagt tcagactaaa ccagaggccc aggctgagcc agaagttcag
     1921 gctggagaaa atcaaattat gtttgagccc gttatggaac ctgagcaatt cgatgttaac
     1981 agggatgatg aggttgataa ttctcagtta agtgaagata aaactcagca aactgaaggc
     2041 catcaaagtt ctgagatgat agagtttgag tcgggtttac atgaattaat caaagataag
     2101 cccaaaacta aaataacaga atcaacagat gaaggagatg ataatggaat agatttcatt
     2161 cctttaacta taaatgaggc tgacaaaaca ttaaagcatg aacaagaaat cgagaagtca
     2221 gacaaaaagg aagataaaaa atcagaaaaa ttttctacaa aggaaaataa gttagattta
     2281 gataattcag actttgatat gaaaaacctc gaatccgaac ctgaaataag ccaggaggaa
     2341 aaagaagccc acatttcaga aataactgaa tttgaccaga aatctactca ggaagaaaaa
     2401 acagaaaaag gtatttctac atctcaatct gttgataagg cgacattcac caagtcatcc
     2461 ggtgaaaaca atgaaacctc cagtccatta aagagtaaga aggcattaga tactttgtta
     2521 gatttggcaa aaacctatat tagtatgggc gatatagaaa cagcaagaag ttctcttgag
     2581 gaagtgatcg agcatggaag tgccaatcaa aaagagcaag ccaggcagtt actggaacaa
     2641 ttaaagtaac aaataacaca aaaattacga ccacccaatc tcttaatatt cgtctttgct
     2701 atttaaaaga caggcttatt agtcatcaaa taaaatactc caataaggct taagaatgcc
     2761 ggccaaccca gaataaacca ataaagaaaa tatcggtgat atttctctgg taaagtagtg
     2821 ttatttttta cggtctctat ggctagatcc ctcattttga tttgcaggca gacgacagga
     2881 aaccaacaac atgccgcaac gacatatcca agaattgatc ccagtatcca taaagaagtc
     2941 caagaaaatc cagcaaggta aatcattgca aaccctgtga gtggttgtaa tattccagat
     3001 gtaccagtga atatccaatc agcaaaaacc acatattttg aaatggcagc aataacaatc
     3061 ggattttttg ttctatggcc ataaatcatc acacttgctg ttcctatacc tgtaccaaaa
     3121 agtatcgttg aactcagcac gtggataaac tttaaataga aatagagcat tatttatcag
     3181 actccaaacc cagacctatt aaaatagcta ttaacaaagg aatgttcttg gctatgggag
     3241 caaatggatc taaccaaagg taaggcagtt tgatggtaat aatcactgta tataccaaaa
     3301 tggtaatcag ttgcaatata ctggtcaatt taaatcgata attaaacaac atggctatac
     3361 ctaaaaggcc atcccataaa gctgaagcat aaaataagaa taactgccat aaggatgaaa
     3421 aacctatttg agcaaacaaa gttaatgagt cacttttagg gtaaaaaaac aaacaacata
     3481 aggctgtcca aatccagaca aaggatattc cgagtcttag gggaagttta agaaagtata
     3541 attgcgcatg ccaatggtct tggactgaac tcggttgact atagagacct tcttcatagt
     3601 ctcttggagt aaagttaaca taattagcaa atcgctgtgt ttcttcctga gtagtaatgt
     3661 tatcactggc aagcatttta tacgaaacag tatttatagt tgaatagggg agcaaatcgc
     3721 caagtcgggt caatagtcga ataaatgtca atggaatatg tattattctg gttttggtga
     3781 acccaagcca ggaacgcagt tttattatta tttcttctag cgtgattatt tttttgctta
     3841 cggcatgcaa aataatagtt tcggttacag gcgtactcac caatcgtact attgcttgag
     3901 ataggtcatt tagagagata ggttgaaatt tttgtgtccc ttgcccaggt atagcggtaa
     3961 aaaaaggtgt tccagcaatc cctctgaata gagaagaccc tccataagag ccttttccat
     4021 acacataaga gggccttact ataactgacg ggatagagag tgtcagtaag taatcatcta
     4081 tcgctttttt actcgtagca taactcacat caactttatc aattcccaaa gcagatattt
     4141 gaataatttt ttttacccca gagtttatac acgcatcaaa aagtgctttt ggagtttcat
     4201 aatggacatt ccatatgatt ctctcatcag gatggtataa aatccctaca caattaataa
     4261 ccacatcaat cccctgcaat ctttttgacc agatttcagg ttttgtgtca ttgataaaat
     4321 cacaaaagat aacttgtgcc ccaggaaaaa tcctttgcgt gtgtttggta ttccgtacac
     4381 aacaaatgat ttcatgtcca gcaatcagca gatcggtaac aaactgtgaa gcgataaacc
     4441 cagatgcgcc tgttaccaga attttcataa ggatctctta tttttgatta caattataat
     4501 agaaatacta taacgaattt aactcctact attcaaattt cctcaccagg attaatttta
     4561 atcaacacca gtttggcata tttaggttaa atgaaatagt atgagttcat gcaaaatgat
     4621 aaaacccata caggcaaaga gttaatactc taaaaattat agacaaaaca aagagggtgt
     4681 tataaattga cctttttatc aggaaaattg aatgcgtatt gccttagtgg ttgaatacga
     4741 tggtagccaa tatcacggct ggcaggctca aacgggtttg catactattc aacaagctgt
     4801 tgaatttgca ttatcaaaag ttgcagacag ttctatttct gttgtctgcg caggtagaac
     4861 agatactggg gtccatgcga ccaatcaggt gattcatttt gattgtgaga aagatcgcag
     4921 catacgagcc tggatacatg gtgctaatac ctttttacct aaagacatct gcgtcaaatg
     4981 gggcaaggaa atgccagaaa attttcatgc tcgttattct gctgtgagtc gacggtatcg
     5041 ctatgtcatt tataatggag ctatacggcc tgggttatta cgcggtaatg tgacatggca
     5101 atatcggcaa ctggatcatc gtttgatgca acagggtgga caatgtcttc tgggggaaaa
     5161 tgattttact tcattccgct ccgtcgaatg tcaatctaat acaccaatgc gtaatattca
     5221 tcaattgcaa gttacaagac atggtgattt ggttgttctt gatattacag cgaatgcctt
     5281 tttacatcat atggtaagaa atatagctgg tgtattgatt gctgttggct cgggaaaaca
     5341 ccctgttggt tgggttaaag atgttttaaa tgcaaaggat agaaaattag gcgctgaaac
     5401 tgcaccgtca tatggcctat atttagtcca ggtgacttat cccaaagaat ttggattgtt
     5461 gcaaaataat cctggccctt tgtttctttg ggagaaataa ttgaatccat ctcgtataag
     5521 aatcaaaatg tgcggaatga cacgttcaga agatattcaa tacgccattg atttaggggt
     5581 ggacgccatt ggcttaatat tttatcccaa aagtgtgcgt aatgtctcac tggaaaaagc
     5641 cagaataata gtcaataata tacctccatt tgttgatatt gttgcagttt tggtaaaccc
     5701 agaacaatct tttgttcaac tgattattaa tgaaattcct gtgcagttat tgcaatttca
     5761 tggtgaggaa tcttcagagt tttgcagaca atttaataag ccgtttatca aagcaattca
     5821 tcctaagaca gcaatccaaa tccaaagtgc tgttgatgag ttttttgatg cgagcgctat
     5881 attgttggat acaccatcag acaaggaacg aggaggaacg ggattaactt ttgactggaa
     5941 tataattcct gaaaatttat ccaagcctta catattggca ggtggtttga atgaatctaa
     6001 cattttagag gcaattacca tgtgtcatcc ttatgcagtg gatgtgtgca gtggtataga
     6061 agcttcaccc ggagtaaaag atcatttaaa aatgagccga tttataaagg caatatgggg
     6121 atagtatgat taaaaaagag cttccagatg agtttggcca ttttggccca tatggcggta
     6181 tgtttgtagc cgatacatta gttcatgctt taaaacaatt agagcatgcc tataccaaat
     6241 atcgtaacga tcaggatttt ctgtctgagt tacacacaga attaaaagat tatgtggggc
     6301 ggcccaatcc tctataccat gccgtacact taagcaaaaa gataggcggt gcacaaattt
     6361 atctcaagcg tgaagattta aatcataccg gtgctcataa aatcaataat accattggac
     6421 aagccttact cgccaaacgt atggggaaaa ctcgagtgat cgcggaaaca ggcgcgggtc
     6481 aacatggcgt tgcaactgct acagttgccg ctaaatttgg gtttcaatgc gttgtgtaca
     6541 tggggtcaga agacattaag cgtcaatcca gtaatgttta tagaatgaaa ttgttaggtg
     6601 ctgaagtggt gcctgtcact tcaggatcaa agacgttgaa agatgcttta aatgaagcat
     6661 tgagagattg ggtgagtcat gtcgacgaca cgttttatat tattggtact gttgcaggtc
     6721 cccatcctta tcctcaaatg gtaagagatt ttcaagcgat tattggtgtt gaagctcgag
     6781 ctcaacatat ggaaaaaaca ggccatttgc cagatgcttt ggtagcttgt gtcggaggtg
     6841 gatccaatgc aataggcttg ttttatccct ttttgaatga tcagtctgtc atgatttatg
     6901 gggttgaagc aggagggaaa ggcatagaaa ccggtgagca ttcggcatct ctgattgctg
     6961 gaaaacctgg tgtgttacac ggtaatagaa cctatttatt gtgtgatgag tatggacagg
     7021 tgaaagacac tcactcagta tcagccggtc tggattatcc tggagttggg cctgaacatg
     7081 cttatttaaa agatactgga cgggtcattt ataaagcaat aaatgattcc gaggccatgg
     7141 atgcgtttcg cctgttaact catacggaag gaattattcc agcattagaa tctagccacg
     7201 cggtagccta tgccatacaa ttggctaaaa ccatgtcaaa agaacaaagc atcatagtca
     7261 atctatctgg tcgtggtgat aaagatatgc atacagtagc tgctattgac ggtataacaa
     7321 tttaattttg ataaattatt caggtacaac atgaaccgta ttgataagac tctggaaaaa
     7381 ttaaaagcca atagaaaaaa aatgttaagt ccttatatta ctgcaggcga tccatatcct
     7441 gagttaacag taagtttaat gcatcaattg gttaaatcag gggcagatgt attggagctg
     7501 ggaataccct tttctgaccc tatggcagaa ggtcctgtta tccaaagagc aatggaacga
     7561 gctttggcgc attcaattca ttgtgatgac gtattgaata tggttaggca atttcgcaaa
     7621 acggataccg aaacgcctgt gattcttatg ggatatttaa atcctataga acaatatggc
     7681 tatgatcttt ttgcccagca ggcagtggag gctggggttg atggaacaat attagttgat
     7741 ttgcctcctg aggaagctga tggagtatcg cgagtttggc aaaaacatgg tttgtacagt
     7801 atttatttat gttcgccaac cacctcagct gaaagaatga actatataaa tcagcatgcc
     7861 aatggttatc tgtattatgt ttcattgaag ggagtgacag gttctgacgc gcttaagttg
     7921 ccagaattaa aagctcaata tctacaacga aaggcacaat caaaattacc gcttatggtt
     7981 gggtttggaa taaaaactcc ggaaatggct gcacaagttg ctgaatttgc tgatggggtc
     8041 attgttgggg cggcactgat aaatgaaatc attgaagcct atgaggccaa gaaagatccg
     8101 ctgcaagcaa gcggggctct attgagttcc atgaggcaag ctatcgataa tattggaagt
     8161 atggtatgac agaacaaact gaaaaaagag ctcactttat tagacaactc attatagatg
     8221 atttggcaaa tggaaaacat cagggaatcg ttactcgttt ccctcctgaa ccaaatggat
     8281 atctccatgt tggacatgcc aaatctattt gtcttaattt tggtttggca gaagagttta
     8341 agggaaaatg ctttttacgt tttgatgaca ccaatccaat taaagaagaa gaagaatatg
     8401 taaacgcgat cattgatgat gttcgttggt tgggatttga atggtgtgcc atgacgcatt
     8461 cttcggatta ctatcatgag ctgtatgaat tagccattta tcttattaag aaagatatgg
     8521 cttatgtcga tagcttgagt atggaagaaa ttcgtgcttt tcgcggcact ctacaagaac
     8581 cagggcgcga aagcccttat agaaacagaa caattgaaga gaatctggat ttgttcgctc
     8641 ggatgaaagc tggtgagttt cctgatggaa ctcatgtttt gagagcaaaa atagatatga
     8701 aatcaggtaa tttaaatatg cgtgatccgg ttttatatcg tatacgccac gcccggcacc
     8761 agcgtacagg agatgaatgg tgtatttatc ccatgtatga ttatgctcat cctatttctg
     8821 atgccctgga aaaaataaca cattctttat gtacgttgga attccaggat catagacctt
     8881 tgtatgattg gctggttgat aatttacctt tgcctgccaa accagtacaa accgaatttg
     8941 ccagattaaa tttatcccat actgttacga gcaagagaaa attacgtgaa ttggttgaaa
     9001 aaaaaatcgt tacaggatgg gatgacccac gattgcccac attacgcggt atgcgcaaaa
     9061 ggggataccc acctgctgca attcggcaat tctgtgaaat aattggcata tcaagaagtg
     9121 attcagtgat tgatatgagt ttacttgagg aatgtgtacg cgctgaattt aataaaactg
     9181 caaaacgggc tctctgtgtt atggatccct taaaagttgt tattgtaaat tatccggaaa
     9241 ataaagtaga acagcttcaa gcagctttct accctcaaaa tcctgagtca gcgagtagga
     9301 atttaccctt ttcccgtgaa atttatattg aaaagtctga ttttatggaa aatccgccta
     9361 ataaatattt ccggttatct cctggagctg aagtacgctt acgtcatgcc tatgttataa
     9421 agtgccagga agttatccgt aatgaccaag gcgaaataac agaattgcat tgcacttatg
     9481 atgaaaatac tcttggcaaa aatccggagg atcgcaaggt gaagggtgtc attcattggg
     9541 tgtcttcatc acatgcctat cctgtcacta tttatcaata cgacaggtta tttacagatc
     9601 ctaatcctgc acgggaagag gattattttc agtttctgaa ccataactct ttacaaaccc
     9661 tccagggatt ttgtgaaccg gcaatggctg agcaggcaga aggagatgtg tttcaatttg
     9721 agcgtttagg ttattattgc gtcaattcag tggctgaggg ctgtgttcaa gcctttcatc
     9781 gggtagtgga tttgaaggac acttggggta aagtgagttg agaggcagac atgttacatt
     9841 tatataattc tttgaccaga aaaaaagaac catttgtttc cttaaagccc ggaacgatag
     9901 gtatgtatgt atgcggaatt actgtgtatg accactgcca cttagggcat gcccgttcaa
     9961 tggttgcctt tgatgtaatg gttcgttatc tgcgctcaca aggattcgat gtaacttatg
    10021 tacgcaatat aactgacata gatgataaaa tcatcgcaag agcctcggag agaggtgtat
    10081 ctattgatga attgaccgca caatatattg atgcaatgaa taatgatact catgcattaa
    10141 atattttgcc acctgaccat gagccaaggg caaccgggca cattgaaact atcattcgct
    10201 tgattcaacg tttgcttgaa aaaggtaacg cgtatgtcag tgagaatggc gatgtgtgct
    10261 atgaagtaga tacctttccc gaatatggga aattatcgca taaagatatt gaaggcttgg
    10321 tttcgggttc tcgcgtagag attgtaaaag agaaacgttc accgcttgat tttgtgctat
    10381 ggaaaaaagc aaaaccgggt gaacccagtt ggccttcacc gtggggggaa gggcggcctg
    10441 gatggcacat tgagtgttca gctatggcta tgcatgaatt aggtgaacaa tttgatattc
    10501 atggaggtgg attggatttg caattcccac atcatgaaaa tgaaattgct caaagtgaag
    10561 cggctacggg taaacctttt gctaattatt ggctgcatgt cggaatgttg caggttaatg
    10621 gcgaaaaaat ggcaaaatca atagggaact tttacactat tgccgatgtt ttaaaagagc
    10681 atcatccgga agtcatccgc tattttctat taagtagtca ttatcgcagt cctttgaatt
    10741 attcagaaga aaatttgtta aatgccaaaa aagcccttat caggctttat caagcggtta
    10801 aagatgttcc gccacaaacc gaagatagta aactggatga gtattggcaa gtgcaattta
    10861 atcaggcaat gaatgatgat ttcaatactc ctgttgcatt atcggttctt ttccaattgg
    10921 ctcatgaggt aaacaaaagt aattcacctg cattggctca taccctgaaa aaccttgctg
    10981 gtattcttgg atttttacaa aaagatcccg aatcattctt gcaatccggt ttggcagagg
    11041 aagaaaaatt ggttatagaa caactcattg ccgagcgtct tcaggcgcga gcggaacgca
    11101 attgggcaaa ggcagatcag attagagctg atttattgag caaaggcata gagctggaag
    11161 atggtgcaac aggaacaaca tggcggagga ttgctgaata attgttcctt ctatgcgctt
    11221 ctcttgaatc agaatggact tctatctcat acttaatata gactgcgatt accttttcag
    11281 aaattttaaa tcaggtatat tggctacatt aattgctgtt tattgactgg attgttcatt
    11341 aagataaatt cgaaattaca tttgaa
//
LOCUS       DACVWI010000097        11251 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.097, whole genome shotgun sequence.
ACCESSION   DACVWI010000097 DACVWI010000000
VERSION     DACVWI010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11251
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.097"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(116..754)
                     /locus_tag="JBH85_09270"
     CDS             complement(116..754)
                     /locus_tag="JBH85_09270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2461 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946392.1"
                     /translation="MDNRRKGMSQFNFFEKNQAFDENNFEQKLQDAINLIKQNQSFVA
                     RLVLDAINSNQVTLSTFYQLTPNHYQKTKTIMRKDYHTILPNTFPPTISAVRKIEKEL
                     DGIIYDNQHIYISSTKSVEEIAKTLIHEVCHFLNSDLYDKEMETEESKQVGYKDEVRA
                     FTAEKMFEKNKGYLLRSDINQIHETVTELYPEFTDPENPMSGYIYSTFDSPS"
     gene            895..1278
                     /locus_tag="JBH85_09275"
     CDS             895..1278
                     /locus_tag="JBH85_09275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HAU0946393.1"
                     /translation="MYIQKLKEMFTQMVIKKNANLIPEYYHGEFLLYTNDIVTGYDEF
                     LSSHQQYYATEIQYQVEYDEETFLEQGEKIAGRVFITTTRPNEPVKRIEVILIAQYKD
                     EKIYRLWELTYPDWSKLPAFSNQLT"
     gene            1498..2058
                     /locus_tag="JBH85_09280"
     CDS             1498..2058
                     /locus_tag="JBH85_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate cyclase"
                     /protein_id="HAU0946394.1"
                     /translation="MSMKGIIFNEFLNFVEKSESYTLVDQIIMDSHLKSHGAYTSIGT
                     YSPKELFQLVKALAMKNGKPTSVILQEYGEYLFEVFAKKYPQFFREKKSVFQFLEALE
                     THIHFEVKKLYDYTELPHFECQYHSQNQMEMIYTSSRPLADFAEGLIKGCIKYHKENM
                     TIVRENLPAKTGFKVRFVLTKGDPDE"
     gene            2048..3328
                     /locus_tag="JBH85_09285"
     CDS             2048..3328
                     /locus_tag="JBH85_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HAU0946395.1"
                     /translation="MMSDYEVLLRHLDREIRARKEAEEISEKKISELYRFAQRLEESL
                     KAQKEISKKLKEKTKALKQQIAKTEEERHAKSTLQTILESAIEYSIIAINLKGVILVW
                     NEGARRNYGYEAQELVNKESIEILHTVEDIQSGKVRKFFQTVRREGKAEEIFQRVRKD
                     GSQFTASVTMTIRYDSQGKKVGYVIISKDITEIKEFEEKLIKSNQNLEEFSYIISHDL
                     KAPLRAIIQLATWIEEDCGNKLDSLSRKNLQLLRERTRRMSGMVDGLLQYARAGRVNM
                     EVEWVDTKELIQEIIDILNHDEQFTIIVHESMPQLPTAKLLLSQVFSNLIANSMKHHH
                     CKTGTIEIGVLDKGTFYEFFVADDGPGIEPVYFEKIFRIFQTLKSKDEAETTGIGLTI
                     VKKIVESQNGKIEVDSELGKGARFSFTWPKVPHQ"
     gene            3389..3799
                     /locus_tag="JBH85_09290"
     CDS             3389..3799
                     /locus_tag="JBH85_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0946396.1"
                     /translation="MMDLAADKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGN
                     QALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTS
                     KDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM"
     gene            complement(3811..5226)
                     /gene="ankD"
                     /locus_tag="JBH85_09295"
     CDS             complement(3811..5226)
                     /gene="ankD"
                     /locus_tag="JBH85_09295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkD/LegA15"
                     /protein_id="HAU0946397.1"
                     /translation="MLTPPPDSKISTTDKSLDKLSAPLDMLKQMNESTMEQTKLDELR
                     KKMSLQAEILNKAKADNDMFFRLLIELMSLKLQGELFKEQLSKISKESGYDSAQSALI
                     QATNSEGQSPLQYALQKQDFSTAKYFLDNGAKAGPIEKAVFEIALDSKAAKEFGFPPL
                     PPEKEKLHPVKNFGLVLGIKTTSVDGTPSQFGHIAPTYQLMTDSVSHFAKSHPGNKNF
                     QEIANAFQFSNEASAFKFSTPQRNPEAGNDLARRIQGGELTTIPVSCKGHAMGLSYVP
                     DGPGSKSGYLVYTNRGLGAKSSEHGTHIFRIEDSSKITPEFINNMTSGHSNGASHDEI
                     MSQIKAAAGNKEPIHHIKQKGQKNDNCTIANSKSNIEGILLCQKAREVGGFDKLTESD
                     MDSVKKEYKEFTKHMRVEKVNELAKALKENPQDPDLNNLTKEYLKQHPNADPKLKQTL
                     ETALKQASESSMTLSQPGKTI"
     gene            complement(5432..6061)
                     /locus_tag="JBH85_09300"
     CDS             complement(5432..6061)
                     /locus_tag="JBH85_09300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946398.1"
                     /translation="MTKIVYLHNDPDKMLYYKDSVPKDLKVVEPDAKMMLEILEQKLK
                     LLEVVDLDWFYCAICMELPKEPVFYPTSEGISNLYEKSELVKWFSRDPRNKSDPVGLG
                     LNVTISQYKTPTPKELLDFVIKSTGFAEEVFIDHYKKPLAKKISPEEELLLEKPDNTR
                     RNEIDSPTHSQSRSCWSLFLYSIFGGKDNRKVMQEKTDSLTSYDIQPHH"
     gene            complement(6371..6817)
                     /locus_tag="JBH85_09305"
     CDS             complement(6371..6817)
                     /locus_tag="JBH85_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946399.1"
                     /translation="MLNFKWCEFSELTSKQLYDILALRASVFVVEQHCPYLDPDGRDF
                     FSMHLLGLEENSLVAYLRLFLPTEIENHLTFGRVVTAKSARTKGYGRKLIRELLSYCD
                     MHYPGIRIQCSAQNYLKKFYEEFDFKSYGSVYEEDGIPHITMQRTL"
     gene            7122..7571
                     /locus_tag="JBH85_09310"
     CDS             7122..7571
                     /locus_tag="JBH85_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946400.1"
                     /translation="MSFNNFLKTFNEFLLEQCGTTYQVADHYLKGKDKPLKSVFFAPY
                     SSAPNFFYRAGHVITAPISFSIITLELVSSSLYLSLKSLNSLVFSDKKAAKIHIIDSV
                     VHFAVSLITAIGVIVSPIINLIDLIGGAISTMKVKSEPAEQMRPSVL"
     gene            complement(7619..8113)
                     /locus_tag="JBH85_09315"
     CDS             complement(7619..8113)
                     /locus_tag="JBH85_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014327007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946401.1"
                     /translation="MAFQRSFFSHIEDDWRYYQNIRAKYSDAIPIPQRKYFEPIHSID
                     SFATLAVRPIEKPLWLGVHTAGFLLKAIIHLVGALVLSPFALIFAVCVPRSELREQTV
                     SSFKSTAAGSIVAAGMACVALLSTLMSLIFNPLYLLSRSAATGIDHLNSVTESCCGLT
                     IAKI"
     gene            8337..11102
                     /gene="ankF"
                     /locus_tag="JBH85_09320"
     CDS             8337..11102
                     /gene="ankF"
                     /locus_tag="JBH85_09320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkF/LegA14/Ceg31"
                     /protein_id="HAU0946402.1"
                     /translation="MKDQLAKIFEKYPFVHLDKSGELSIIVPLTGAASISDNFTADET
                     KPIFLYLFGDNTCKSDLERRTFFYGKQKSGGRHSVKPFTELFSNLIHELNGLKSSTEI
                     RVDEQLFLETIIANLNELKEQALAFRKGNPGFEDMRNDFSHSDEIMVSKSEFVVTVYP
                     DRVRQFDLPNVMSLINPGESRYKQLLAQSDINQCLEALSLVQKPAAEGNLDLIADALG
                     KLDADPIDYLCKKDNKDPQALFKAVYEILQKQDTSLENQQSAVFEVMEGNLVAAFGDN
                     EDFSTWQKEEIVDAIKSIFKQANLLSEQSGTKQKTFADVYNQAFDKYNESTNDDSESG
                     CKRRNTYQLFILQTFLYLCSLQLRLKNKEKAKKFLGLFEDRGTLNNLVLQLCNDEKAF
                     MRMMADEFGLTSAEYASIAESTYGIVLAHIDAEHFDELRIACSAQLLQDSNYIVMGGR
                     LCWSTSSINEEGNIRSLEQQKKISSENFEIFYNQRQSYIDKSREFQQIKVLLDKEVND
                     EGIAEAVASKVRYLTKYQKSQILSEVIQKKKYEHAKLLIENYANLVFPSVFISVIKSR
                     PVHIDLIRAFLNADSRHALNIDGNDLIQAAKKGDFELVKIIIEHRPDLLESKDSFQQT
                     PLLWACVNGYVDIVEYLMDSGADIHVRTKVSGSHRYKIGETPTGGRTALDWARCYDKT
                     DPVKASKIIALFDTYYQRMEDHFKANSAYKDQFNKAHLTQAINNGDLKLIALFLKYCP
                     HLEKFFTQEDQLRAKQRHNQQMLRSQIMPYQNSFNKLLDELQRKAELLNKKYGTLHEA
                     TNVMQALINDLSTVGNDFFMDDITPQSFQKFERKCKQVLEEASPVLSTHRGWHGYPDF
                     VRRFIGVIATLAVIPALVVHFSSAKGYVGVFFSGKENIKTDSSEKMGEFANNLETLKT
                     EISNKLA"
BASE COUNT         3601 a         1888 c         2189 g         3573 t
ORIGIN      
        1 tatacttaat attcttgaag atacgtagat tttttaactt atttcatttt atgttccact
       61 acggcgctcg aaaatcaagg cttttcgact caagctggca aaatgtaaac agcccttaag
      121 aagggctatc aaaagtgctg taaatatacc ctgacattgg gttttccgga tcggtgaatt
      181 caggatatag ttcggtaacc gtttcatgta tttggtttat atcgcttctg agcaggtagc
      241 ctttattttt ttcaaacatt ttttctgctg taaatgctct tacttcatct ttatagccga
      301 cttgttttga ctcttctgtt tccatttctt tatcgtaaag atctgaattt aaaaaatgac
      361 agacttcatg gattaatgtt ttggcaattt cttcaacgct ttttgtcgaa ctgatataaa
      421 tatgttgatt atcataaata atgccatcca gttctttctc aattttacgt actgcggaaa
      481 ttgtaggggg gaaagtattt ggaaggatag tatgatagtc ctttctcata attgttttcg
      541 ttttctggta atgatttggg gtaagttgat agaaagtact taatgtgact tgattggaat
      601 ttatcgcatc gagcactaat cttgcaacaa aagattgatt ttgttttatc agattgattg
      661 catcctgcaa tttttgttca aaattgtttt catcaaaagc ctggtttttt tcaaaaaaat
      721 tgaattgaga cattcctttt ctcctattat ccagtattaa tgattacttc catgcaattt
      781 catagtaacc tttcttcaat taatgaacaa tactgagggt aatttttcaa aatgatcagt
      841 tttattgcta aataattgtt gtataatttt gaaaaattaa tttgagagta gaaaatgtat
      901 atacaaaaat taaaagaaat gtttactcaa atggtaatta agaaaaacgc caatcttatt
      961 ccagaatatt accacgggga gtttctgctc tataccaatg atatagtgac aggctatgat
     1021 gaatttctaa gctcgcatca acagtattat gcgactgaaa ttcaatatca agttgaatac
     1081 gatgaagaga ccttccttga gcaaggtgaa aaaatagctg ggcgggtatt tattaccacc
     1141 actcgaccta atgagccagt caagagaatc gaagtcattt tgattgccca atataaagat
     1201 gaaaagattt atcgattatg ggagttaact tatccggatt ggtccaagtt acctgccttt
     1261 tcaaatcagc taacctagac gattctcttc tcctccaaac aggggaatat cagaaaagta
     1321 gttggtcaag atttccccgc tttacatggt gtagcgccac gcaggagcga gcaaggcctt
     1381 atggtttaat caatatgagc aaaaaaatgc aaaacattcc tgcttgcgtc aggattatat
     1441 tattgatgac aaatttacga ctatacttat agtattaatc aattgatata aaacatcttg
     1501 tctatgaaag gaatcatatt caacgaattt ctcaattttg tagaaaaaag tgaatcctac
     1561 accctggtag atcaaattat tatggatagt catttgaagt cccatggtgc ctacacgtct
     1621 atcggtacat actctcccaa agaattattt caattggtta aagcgcttgc tatgaaaaat
     1681 ggcaaaccaa catcagtgat tttacaagaa tatggtgagt atttgtttga ggtttttgca
     1741 aaaaaatatc ctcaattttt cagggaaaaa aagtcggtgt ttcaattttt ggaagcgctt
     1801 gaaacacata ttcatttcga agtgaaaaaa ttgtatgact atactgaact accccatttt
     1861 gaatgccaat atcacagtca aaatcaaatg gaaatgattt acacttcttc gcgtcctttg
     1921 gccgattttg cggaaggttt aataaaaggt tgtattaaat atcataaaga aaacatgact
     1981 attgttcgtg aaaatctgcc tgcaaaaaca ggctttaagg taagatttgt attaacaaaa
     2041 ggcgatcctg atgagtgatt atgaagtatt gttacgccat cttgatagag agatacgcgc
     2101 aaggaaagaa gctgaagaaa taagtgaaaa aaaaatatcc gagttatacc gttttgccca
     2161 acgtctggaa gagagtttaa aggctcaaaa agaaataagt aaaaaattaa aagagaagac
     2221 caaggcatta aagcagcaaa tcgctaaaac agaagaagaa cggcatgcca aaagtacttt
     2281 acaaaccata ttggaaagcg caattgaata ttcaatcatt gcaatcaatt tgaaaggcgt
     2341 catcttggtt tggaatgaag gggccagacg aaattacggc tacgaggctc aagaattagt
     2401 gaacaaagag agcattgaga ttttgcatac agtggaagat atccagtcag gtaaagtacg
     2461 aaagtttttt caaacagtac gtcgggaagg aaaggcggaa gaaatatttc aaagagtcag
     2521 aaaagacggg tcccagttca ctgcttccgt tactatgact atccgctatg attcgcaagg
     2581 aaaaaaagta gggtacgtca ttatttcaaa agatattaca gaaattaaag aatttgaaga
     2641 aaagctgatt aaaagtaacc agaatcttga agagttttca tacattattt cccatgacct
     2701 aaaagcgccg ctaagggcaa ttattcaatt ggcaacgtgg attgaagagg attgcggaaa
     2761 taagttggat tctctttcca gaaaaaatct tcaattgctc agagaacgta cccgtcgtat
     2821 gagcgggatg gtagatggct tattacaata tgcgcgggca ggcagggtca atatggaggt
     2881 agaatgggta gatactaagg agttaattca agaaataata gatattctta accatgatga
     2941 acaatttact attatagtcc atgaatccat gccccaactg ccaacggcca aattacttct
     3001 aagtcaggtt ttttctaatc tgatagcaaa tagcatgaaa catcatcatt gtaaaacagg
     3061 aacaattgaa attggtgttt tggataaagg cacattttat gagttttttg tggcagatga
     3121 tggtccaggt attgagccgg tgtattttga gaaaatattc agaatatttc aaaccttaaa
     3181 atccaaagat gaggcagaaa ctaccggcat aggattaact atagtaaaga aaattgtaga
     3241 atctcaaaat gggaaaattg aggtggactc tgagttgggt aaaggcgcaa gattttcatt
     3301 tacatggcct aaagtccctc atcaataaag gtttaggtct ataattaatt tagaaataaa
     3361 aaaataaaac attgtctcac ggagaatagt gatggacctc gcagctgata aagtagatat
     3421 cctgtatttg gaagatgatg aggttgacat tcagtctgtt gagcgcgtat tccataaaat
     3481 cagttcatta atcaagattg aaatagctaa aagtgggaat caggcattgg atatgctata
     3541 tggtcgaaat aaagaaaata aaattcatcc caagttaatt cttctcgaca tcaatatacc
     3601 taaaatgaac ggtattgagt tcttaaaaga attaagagac gactcttcct ttacggatat
     3661 agaggtattt gtacttacgg cagcctatac cagcaaggat aagctggctt ttgagtcttt
     3721 aaatattcga ggccatttga ttaaaccact cgattatggc gaggctatta aactattttg
     3781 gatattacaa tccatgtagg ctcggtagta ttaaatggtt ttccctggtt ggcttagtgt
     3841 catactgctt tcagaagctt gttttaatgc agtttccaag gtttgtttta gtttagggtc
     3901 ggcgtttgga tgttgcttca aatattcttt ggttaaatta tttaaatcag gatcctgagg
     3961 attttcttta agggctttgg ctaattcatt gactttttca actctcatat gttttgtaaa
     4021 ttccttgtat tcttttttaa cggagtccat atcgctttct gttaatttat cgaaccctcc
     4081 cacttctctg gctttttggc ataatagtat tccctctatg ttggatttgg agttggctat
     4141 tgtgcaattg tcattttttt gtcctttttg tttgatatgg tgaatgggct ctttgtttcc
     4201 ggcagctgct ttaatttgag acataatttc atcatgagac gcgccattcg aatgtccact
     4261 tgtcatatta ttgataaatt caggtgtaat tttgctggaa tcctcgattc ggaaaatatg
     4321 ggtgccatgc tcgctgctct ttgctccaag accacgattg gtatatacca ggtagcccga
     4381 tttcgaacca gggccgtcgg gtacatacga taatcccatg gcatgacctt tacagctgac
     4441 aggaattgtg gtgagttcgc ctccttgaat gcgtcttgca agatcgttac ctgcttccgg
     4501 atttctttgt ggtgtgctga atttgaatgc cgatgcctca tttgaaaact ggaaggcatt
     4561 ggctatttcc tgaaagttct tgttgccagg atgagatttg gcaaaatgac tgaccgaatc
     4621 tgtcatcaat tgataagtgg gcgctatatg gccgaattga gagggagtac catccacact
     4681 ggttgttttt atacctaaaa ccagaccaaa atttttgaca gggtgcagtt tttccttttc
     4741 gggtgggagt ggaggaaacc caaattcttt agccgcctta ctgtcaagag caatttcgaa
     4801 gacggctttt tctatcggac ccgcttttgc tccgttatcc agaaaatact ttgccgtaga
     4861 gaagtcttgt ttttgcaggg cgtattgtaa agggctttgc ccttctgagt ttgtggcttg
     4921 aattaatgcg ctttgtgcgc tgtcataacc actttcttta gaaattttgc ttaattgttc
     4981 tttaaataat tcaccttgga gttttaatga cattaattcg ataagtaaac gaaaaaacat
     5041 gtcattatct gctttcgctt tattaagtat ttccgcttgc agggacattt tttttcgtag
     5101 ttcatcaagt ttggtttgtt ccattgttga ctcattcatt tgtttaagca tatccaatgg
     5161 agcgcttaat ttatccaaac ttttatcggt ggttgaaatt tttgagtcag gcggaggagt
     5221 caacatggaa catcctggtt gattggttga actatatcat tattatacat caggacttac
     5281 aaaaccccca atctctttgt taaaaattgt ttttaattcg gtcatttagt ttatcgaaac
     5341 tctctcatta aacacatttt tgccttgatc tttgggggtg taagttctgt gcataacaaa
     5401 aaaaccgtct aaaaaacttg atttattttc attaatgatg gggctgtata tcatacgatg
     5461 ttagggaatc agttttttcc tgcattactt ttctgttatc tttaccacca aaaatactat
     5521 acaaaaagag actccagcag gatcttgact gtgaatgagt ggggctatct atttcattgc
     5581 gtctggtatt atcgggtttc tcaagtaaga gctcttcctc aggggaaatt ttttttgcta
     5641 gtggtttttt gtaatggtca atgaacacct cttcagcaaa tcctgttgat ttaataacaa
     5701 aatcaagcaa ttcttttgga gtaggagttt tatattgaga tatagtaaca tttaaaccaa
     5761 gtccaacggg gtcggattta tttctggggt ctcttgaaaa ccatttgact aattcacttt
     5821 tttcgtaaag attactaatg ccttctgagg ttggataaaa cactggctct ttaggaagtt
     5881 ccatacaaat tgcacaataa aaccaatcta aatcaactac ttcgagtagt tttaattttt
     5941 gctctaaaat ttctaacatc attttggcat ctggttcaac cacttttaaa tctttgggaa
     6001 cgctgtcctt ataatagagc attttatccg ggtcattgtg tagataaaca attttcgtca
     6061 taacctctcc atagaataat actttaaata acgtgagtta tggataaaga tgatatatca
     6121 accagtcgat acccagggaa cactcaggct gaggagatgc ataagcattg tctcgaagcc
     6181 ctggcatgaa acatgaaatc cgatactagg cttcgagata atgactgatt ttatccatag
     6241 ctcgcgttaa ataatattat taatgagtaa acatgataaa aagtgtgctt tattgtagca
     6301 ctaatgtcaa tttaaaattt gatcgggctg atagattact tccaggaaac ccggattggt
     6361 tattgcggtt ttataaggtt ctttgcatgg taatatgggg aataccatcc tcctcataaa
     6421 ccgagccata acttttaaag tcgaattctt catagaattt tttcaagtaa ttttgggcag
     6481 agcattgaat gcgaatacca gggtaatgca tgtcgcaata agacaataat tcacgtatca
     6541 gttttcttcc atatcctttg gtccgcgctg atttagctgt aacaacacgg ccaaatgtga
     6601 gatggttttc gatctcagtt ggaagaaaca ggcgcaaata agccacgaga gaattttctt
     6661 ccaggcccaa taaatgcatg gaaaaaaaat ctctaccgtc tggatcaagg taggggcagt
     6721 gctgttctac tacaaaaaca ctcgctcgta atgccagaat gtcatagagt tgtttgcttg
     6781 ttaattctga aaactcacac catttaaaat taagcatgaa aaactcccaa tccggctaaa
     6841 atcttcgatg cattatgctg aagttatgac tctgaaatca agtggagtaa tgatcaggat
     6901 tttgttaaag aatggtttta attaagtcaa ttagtttaaa taacacccat tattaaaaac
     6961 attttttgct tccaactgga tgtatttggc aagttctgat tataccaggg caaatttaca
     7021 ggcgatagat tgaagtaaaa atcattatcg aaattatctt tagtaattaa tgcaaattca
     7081 tatattatta tgaagatttt tttaacaggg agtatctatc gatgtcgttt aataatttct
     7141 taaaaacatt caatgaattt ttattagaac aatgcggtac cacttaccag gttgctgacc
     7201 attatttgaa agggaaagac aaacccctca aatcagtttt ttttgctcct tattcatctg
     7261 cccctaattt tttttacaga gcaggccatg tgataacggc accgattagt ttttctatta
     7321 taactttaga gcttgtttca tcgtctctct atttgagctt aaagtctctc aacagcctgg
     7381 ttttttctga taaaaaagcc gcaaagattc atattattga tagcgtggtg catttcgctg
     7441 tttctcttat taccgcaatt ggtgtgattg ttagccccat tattaatttg attgatttga
     7501 ttggaggagc aatatcaact atgaaggtaa aaagtgagcc agcagaacag atgagaccat
     7561 ctgttctcta gttttcgcca gatttgaaat aaataagggt tgcgattgaa ccacctaatc
     7621 agatttttgc tatagtcaga ccgcaacagg attcggttac tgaattaaga tgatcgattc
     7681 ctgtggcggc acttcgactt aatagataca acggattaaa aataagcgac attaaagttg
     7741 agagtaatgc aacacaagcc atacctgcag caacaataga tccggcagca gtagatttaa
     7801 atgatgagac agtttgctct ctcaattcgg atctcggaac acataccgca aagatcaaag
     7861 caaatggtga aagaactaat gcccctacta agtggattat cgctttcagc aaaaaacctg
     7921 ctgtgtgaac accaagccaa agaggttttt caataggccg tactgctaat gtggcgaatg
     7981 aatctatgga atgaatgggt tcgaaatatt ttctttgtgg tatgggtata gcatcagagt
     8041 attttgcacg aatgttttga taataacgcc aatcgtcttc gatatgagaa aaaaatgatc
     8101 tttgaaaagc cactggaaac tccttgttat tgaatcagcg gatattaaaa aaattggcag
     8161 tgtttgtaaa taataggcaa gttattcatt tttcaaatct tgggattttc ttgttggcag
     8221 agacaacaag aggttttttc tgggcttatt tatgcccaca gtgttattaa ttttgtctta
     8281 agcaaactat attacaatgg cgccaaaaaa gcttaaaatg aaagagtata acgaaattga
     8341 aagaccaatt agccaaaata ttcgaaaaat acccctttgt tcatttagat aaatcaggtg
     8401 agctatcaat aattgtgcct ttaacaggcg cggccagtat ttccgacaat tttactgccg
     8461 atgaaaccaa gccaattttt ctttatttat ttggcgataa tacgtgcaaa tcggatttag
     8521 aaagaagaac ttttttttat ggtaagcaga aatccggagg tcgtcactct gtaaaaccct
     8581 ttaccgaatt gttctcaaat ttgattcatg aattaaatgg tctcaaatcg tctactgaaa
     8641 tccgtgtgga tgagcaacta tttcttgaaa caatcatagc aaatctcaat gagttgaaag
     8701 agcaagctct cgctttcaga aaaggaaatc caggctttga agacatgagg aatgatttta
     8761 gtcacagcga tgaaatcatg gtatcaaaga gcgagtttgt tgtaacggtg tatccagaca
     8821 gagtgcgaca atttgatttg ccaaacgtaa tgagtcttat aaaccccggt gaatcccgct
     8881 acaagcaatt acttgcccag tccgacatta atcaatgcct ggaagcattg tctcttgtgc
     8941 aaaagcctgc tgcagagggt aacttggacc tgattgctga tgcgctggga aaactggatg
     9001 cagaccccat cgattactta tgcaaaaaag ataataaaga tcctcaagct ttatttaaag
     9061 cggtttatga aattctgcaa aaacaggata cttctttaga aaatcaacaa tcagctgttt
     9121 tcgaagtcat ggaaggcaat ttggtcgctg cctttggaga caacgaagac tttagtacct
     9181 ggcaaaagga agagatagtc gatgccatta aatcaatatt taaacaagca aatttgctga
     9241 gtgaacaatc aggaaccaag caaaaaacat ttgcagatgt ctacaatcag gcttttgata
     9301 aatataacga aagcactaat gatgattctg aatcaggatg taaacgcagg aacacttatc
     9361 agctgtttat tttacaaacg tttctctatt tgtgttcttt gcagttgcgt ttaaaaaaca
     9421 aagaaaaggc aaaaaaattc ctgggtttgt ttgaagacag gggtacgttg aataatttgg
     9481 tattacaatt atgtaacgat gaaaaagcgt ttatgagaat gatggccgat gaatttgggc
     9541 tgacttctgc agaatacgcg tctattgctg aatcaactta tggcatcgtc ttggctcata
     9601 ttgatgctga acattttgat gaactaagaa tagcatgcag tgctcaattg ctccaggatt
     9661 ccaattatat cgtaatggga gggcgtcttt gttggagcac cagttctatt aatgaagagg
     9721 gaaatatacg aagtttggag cagcaaaaga aaatttcatc tgaaaatttt gaaatttttt
     9781 ataatcaaag acaatcttat attgataaat caagagagtt tcaacagata aaagttctgc
     9841 tagataaaga agtgaatgac gaagggatag ctgaagctgt ggcgtcaaaa gttcgctacc
     9901 tgacgaaata tcaaaagtca caaatcttaa gtgaagtgat tcaaaaaaag aaatacgaac
     9961 atgcaaaact tttaattgaa aactatgcca atcttgtttt cccatccgtg tttatttcag
    10021 tgataaagag tagaccggtt catattgatt tgattcgagc gtttctcaac gcagactctc
    10081 gtcatgcgtt gaatattgac gggaatgatt taattcaggc agcaaaaaaa ggagattttg
    10141 agctggttaa aatcattata gaacatagac cagatttatt ggaatccaaa gactctttcc
    10201 aacaaactcc gttgctttgg gcttgtgtca atggctatgt ggatatcgtg gaatatttaa
    10261 tggattcagg tgctgatatt catgtcagaa caaaagtgtc tgggagtcat cgatataaaa
    10321 ttggagaaac cccaactggg ggacgaaccg cacttgattg ggcgcgatgc tatgataaaa
    10381 ccgatcctgt aaaggcatca aagataattg ccttatttga tacttattat cagcgcatgg
    10441 aagaccattt taaagccaac agtgcttata aagaccaatt caacaaggct catttaaccc
    10501 aggcgataaa taatggggat ttaaaattaa tcgcattgtt tttaaagtat tgtccacacc
    10561 tcgaaaaatt ttttactcaa gaagatcaac tacgtgcaaa acaacgacat aatcaacaga
    10621 tgttgcgttc tcaaattatg ccgtatcaaa attcattcaa taaattatta gatgaattac
    10681 aaagaaaagc agaattactg aataaaaaat atggtactct tcacgaagca accaatgtca
    10741 tgcaagcact aattaatgac ttatccacag taggaaatga tttttttatg gatgatatta
    10801 cgcctcaatc ttttcaaaaa tttgaaagga agtgtaaaca ggttcttgag gaggccagcc
    10861 cagttttatc aacgcatcgt ggttggcatg gctatcctga ttttgtcaga agatttatag
    10921 gagttattgc aaccttggca gttattcctg cattggttgt acacttttca tcagcaaagg
    10981 gatatgtagg agttttcttt tctggcaaag aaaatataaa aacagactct tctgaaaaaa
    11041 tgggtgaatt tgcgaataac ctggaaaccc taaaaacaga aatatccaat aaactggctt
    11101 agctggatag tttaaccgct gaaaccaagt gtttctttct attctgtttg ggctgtgggc
    11161 aaagggttct atggaaccct tgatttttgt tttaataaaa cactttattt tcaaacttaa
    11221 accagatacg atgtaaaaaa gtattatgat t
//
LOCUS       DACVWI010000098        11130 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.098, whole genome shotgun sequence.
ACCESSION   DACVWI010000098 DACVWI010000000
VERSION     DACVWI010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11130
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.098"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            74..1633
                     /locus_tag="JBH85_09325"
     CDS             74..1633
                     /locus_tag="JBH85_09325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate O-acetyltransferase"
                     /protein_id="HAU0946403.1"
                     /translation="MMMRIFSRFSDRLVIFAFLVIIFVPGIGMFFEKQADEVRSLLNR
                     EPHQLPPINIKKIGRTDFKGIENWFVDHTLFMTSLSKFWSHVVYQLGTSIKPGQAILG
                     KEDWLFLGNDYAASIDQYTGRNKPTEEEVLLKLSVLKQMNHLAKQNDIPFLVVIAPDK
                     HEIYPEYLPANVHKSSNKNRLDLLQEGMLARGIDFINLRQKEMEAKNTLGKQYGDLYL
                     KGDSHWNYVGAYVAYQAISDYMRQKGLQSRQLQFNFIPRETTYSDLTNFLQLTHIKSN
                     NPLPDVSNLKIDLFGRDIDGKEIKLDDFQGNPNGVILIAPYENINKAVQNKQTCLLIG
                     DSFSESLSFYFHNDFYNTVRIHSGNTSWNLSDLIQKYHPDLIVYEKVERDLLYPLVNF
                     QTTANQVNLELPKQVLTARGGVDKFKIGPDTISVNGWAYIPDLDAGNGEVFLKLSMGT
                     HTYLYSMNKMQKQSVNLAFKQDGKHLDLSGFNGTISRKDLPSGLYKVSLIVVNDEVMG
                     ETELPGTYTLS"
     gene            1638..1748
                     /locus_tag="JBH85_09330"
                     /pseudo
     CDS             1638..1748
                     /locus_tag="JBH85_09330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947063.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3175 domain-containing protein"
     gene            1769..2161
                     /locus_tag="JBH85_09335"
     CDS             1769..2161
                     /locus_tag="JBH85_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archease"
                     /protein_id="HAU0946404.1"
                     /translation="MHEADIGVRGIGPTLPDAFEMGALALTNVVADAALIKPSLSIKI
                     HCEAPNEEILFTDWLNAVVYNMQIHNMLFREFDVKLNRFVLDAVIRGEKVDQKKHQPV
                     VEVKGATYTELKIYKNNGIWIAQCVVDV"
     gene            2192..3625
                     /locus_tag="JBH85_09340"
     CDS             2192..3625
                     /locus_tag="JBH85_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HAU0946405.1"
                     /translation="MMDLSLLKKINDFEWQIPQHGKMLVPGVIFASEQLILDMDMKVY
                     EQLSNVATLPGIVSAAYAMPDAHWGYGFPIGGVAAFDPDDGGVISAGGVGFDISCGVR
                     LLSTGLKRDELESVKVSLADALFTHIPAGVGSRGGIHLTIKQLDDMMRGGAQWAVKQG
                     YGEAADLERIEDRGCVEGAIPDFVSEQAKKRQKNEMGTLGSGNHYLEVQEVRQIYCSD
                     TATALNLHEGDIVVSIHCGSRGLGHQIGTDYLRSMVIESQHYGIKLADRELACAPIHS
                     KLGENYLGAMRAGINCALANREIITHFMRNVFQDILPRTQIDLIYDVSHNTCKEEFHE
                     VDGKKKRLFVHRKGATRALGPGHPQLPKAVSHIGQPVIIGGSMGTGSYVLAGVKGSEH
                     KSFSSACHGAGRAMSRHQAMKKWNGKDIVDKLAQQGILIRSGSYRGVAEEAPGAYKDV
                     HSIVDAAEMSGLAKKVAKLIPIICVKG"
     gene            3758..4294
                     /gene="cegC4"
                     /locus_tag="JBH85_09345"
     CDS             3758..4294
                     /gene="cegC4"
                     /locus_tag="JBH85_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector CegC4"
                     /protein_id="HAU0946406.1"
                     /translation="MSAKQKELERLLELKKKQEEQQVLNQKDMLERIKLENKYMEFLQ
                     MTSQQMEEELKKRGPVKEVEVKGKDIDPIIADYKKLYSKESWYKEPETKDGKTHLTFP
                     SQEAAGTFFKDQAEKNRSFIVIDAATNKVLAYSNGDGKLYNGNGSLYQGGDFKASKED
                     FTSFKMPEREEPKMGMQL"
     gene            4460..5092
                     /gene="cegC4"
                     /locus_tag="JBH85_09350"
     CDS             4460..5092
                     /gene="cegC4"
                     /locus_tag="JBH85_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector CegC4"
                     /protein_id="HAU0946407.1"
                     /translation="MYPNFLGMACLFHKRKNMLTINREKFEEIKNQLKEKQLVCNQIA
                     QWKKTPLWLREMTHQPEIPPNFLNELRQIRDAIVSFEIDKNTLGLAVFYNELYKLLAP
                     SYNVLTPIDTDHMNNHVLLLQRISNYAGKVDEHIKSLSASEVKHLDYAEFWSLLSETC
                     SIQEVDRRKQAKEKFSQSIFLRLCQYNPKIYLDVATRLEEPAEQSNTLDF"
     gene            complement(5097..6602)
                     /locus_tag="JBH85_09355"
     CDS             complement(5097..6602)
                     /locus_tag="JBH85_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946408.1"
                     /translation="MMIKIIREMPHGVAALCLIQAFSTFSYAVQYSSLALFITKQLGI
                     ANLSANSIVGLFLSFSYIFQLIGGVIGSRFISNRLLFVTTILIQNMGLFFLAQANPSL
                     LNIGLSLFMVGSGLNVTSSNSMLTQCFIPQDDRRESAFFLSYAGMNVGYCIGYIACGF
                     FDYSNQYQYLLYASILTNSIALLIIIKNWAYLGDKNFPLPNLTKRNWYFIKNILAIAF
                     ITFLIPFMRVCFEFANFCNGLVIITCLFMFLIIFILGLKQKSSSDRKKMMAYLILAIS
                     SVLFWMIYLTGPMGVTLFVKNNVDKHLFSFELATQWIKNINPVVIIFGAPIMSMLINK
                     LKAKGFHVSAPVQFSCSFVFLALSFLCLIFGIICSNSYGYISIYWIIGHHILQGMSEL
                     LLGPVGYALIGRIAPPKLQGILMGTWMLVIGVAASFSQYFSNAMVQSESVDPLITNQD
                     FLTAFKQLGLWSLLCAALLYFVSGKLTRIINGTKDNKSVNESKALPMPYSN"
     gene            complement(6772..6942)
                     /locus_tag="JBH85_09360"
                     /pseudo
     CDS             complement(6772..6942)
                     /locus_tag="JBH85_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844388.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
     gene            7072..7467
                     /locus_tag="JBH85_09365"
     CDS             7072..7467
                     /locus_tag="JBH85_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HAU0946409.1"
                     /translation="MEEYANAARDKDIDKIMSYYAPDIRSFDAVSQLQFKGADDYRKH
                     WQTCLSFCPGPSVFEVHELETLVDNNLAVSYYLTYCGGTNEKGEMQGGWMRGTMVHCK
                     MNGKWKIMHEHYSVPFDMKTGNTLFDLKP"
     gene            7522..8493
                     /locus_tag="JBH85_09370"
     CDS             7522..8493
                     /locus_tag="JBH85_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase family protein"
                     /protein_id="HAU0946410.1"
                     /translation="MSLRILSLSDVKQSITMHQAISALESAFIQLANNTVKLPLRTGV
                     TIEEENGLMLTMPGYLAQEKSLGLKVVSIFPENLTKNKPTITGFIMLLDATTGEAKVL
                     MDAAYLTSLRTGAVSGLATKYFARDNATQVAIIGSGAQAKTQLEAVASVRDIQQVFVW
                     SRNIKNAEKFANEFEDQFDMTICPSVAMAVKDADIICTATNSTEPLIHFGDISPHAHI
                     NAIGSHHPSMKEISHDVLSRAVVIADQLDAVLAESGEIISAVEHNHLKKELIIEIGHW
                     LLQKNTDYKDKLTVFKSVGLAIQDLSVAEAVYQNALKNNLGEIFSIS"
     gene            8524..8820
                     /locus_tag="JBH85_09375"
     CDS             8524..8820
                     /locus_tag="JBH85_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946411.1"
                     /translation="MSHPGKKKILFSILYSLRHLIALLVMSVGIYLIKTVTAILYLPS
                     DYSTLPLLSLCGVLWLSNDFFLRFILVVNFIIKPFFLYLGVLFCFYYLHKKCCS"
     gene            complement(8933..9559)
                     /locus_tag="JBH85_09380"
     CDS             complement(8933..9559)
                     /locus_tag="JBH85_09380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096206.1"
                     /note="macrophage inducible 5; Mig-5; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HAU0946412.1"
                     /translation="MWTLTKEQQQAITPEKAIELLKEGNKRFVNNLKLNRNLLQQVNE
                     TSQGQFPFAVILSCMDSRTPAELIFDQGLGDVFSIRVAGNILNDDILGSIEFACQVVG
                     VKLIAVVGHTQCGAIKGACDGVKLGNLTNLLNKISPVIQEAKKLDSKHDVHSPEFLNC
                     VTSLNVKHTMNEIKQRSNIVHQLLDEKRIAIVGGLYQLETGEVQFFDE"
     gene            complement(9563..11116)
                     /locus_tag="JBH85_09385"
     CDS             complement(9563..11116)
                     /locus_tag="JBH85_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HAU0946413.1"
                     /translation="MEFKRITKYEAIMKHGLFAHLKHDLPASIVVFFVALPLCLGIAL
                     ASHVPLFSGIIAGVIGGVVVGFISGSALGVSGPAAGLVAIVISSVETLGSWEAFLLAG
                     VIAGILQLIAGFLRGGIIAYYFPSSVIKGMLTGIGIIIVLKQIPHLLGHDVTPLLLSM
                     SDGELDINDIREALDDINPEVVIISIVSLLTLIFWEKLVKKHKLFEMIQGPLVVVILG
                     IALNLFYEHRLTSFSLDPSELVQLPKFNKASELFNYLTLPDFSLITHLKIYKIAILIA
                     LIASLETLLCVEAVDKLDPYKRVTSTDRELKAQGVGNILSCLIGGLPITQVIVRSSAN
                     VAFGAKSKLSAILHGLLLFICVISIPEILNEIPLASLASILIIIGYKLAKPALFKQMY
                     KMGWEQFVPFMITIIGIIFSDLLFGITLGFSLAIFIILRHHFLNSHDMIKTRGKNKTQ
                     YCLKLAEEVTFLNKGSIINELKNIPEGAEVVIDGSRSKIIDHDIKEVIQNFILNSKTK
                     NIQVKLIGI"
BASE COUNT         3618 a         1914 c         2241 g         3357 t
ORIGIN      
        1 gaatactgct tttactggtt tcaatattat tattaagcac taattcttat aaccctttcc
       61 tctattttag gttttgatga tgcgtatttt ttccaggttt tctgacaggc tggtcatctt
      121 tgcttttctg gtaatcattt ttgtaccagg gattggtatg ttttttgaaa aacaagcgga
      181 tgaagtgaga tctctgttaa acagagaacc tcatcaactc cctcccatta atataaaaaa
      241 aataggtcgt actgatttca agggcataga aaattggttt gttgatcata ccttgttcat
      301 gacttcgttg agtaaattct ggagtcatgt cgtatatcag ttgggaacca gcatcaaacc
      361 tgggcaagcc attttgggga aagaggattg gctgtttttg ggcaatgatt acgcggcatc
      421 catcgatcag tacacaggga gaaataagcc taccgaggaa gaagttctct tgaaattatc
      481 tgttttaaaa cagatgaatc atctggctaa acaaaatgac attccttttc tggtggtcat
      541 tgccccagat aaacatgaga tttatccgga atatttaccg gctaacgttc ataaaagctc
      601 caataagaac aggcttgacc ttttacaaga gggaatgctt gctcgaggta ttgattttat
      661 caatttgaga caaaaggaaa tggaagccaa aaatactctt ggcaaacagt atggagatct
      721 ttatttaaag ggggatagtc actggaatta tgttggtgct tatgttgctt accaggcaat
      781 atcagattac atgcggcaaa aagggttaca gagcagacaa ttacaattta atttcatacc
      841 cagagaaacc acctactctg atcttaccaa ttttctgcag ttgacgcata tcaaatccaa
      901 taatcctctt cccgatgttt caaatttaaa aatcgatttg tttggcagag acattgatgg
      961 aaaagagatt aaattggatg attttcaggg caatccaaat ggtgtaatcc tcattgcgcc
     1021 ttacgagaat attaataaag ctgtacaaaa caaacaaacc tgtttattaa taggagacag
     1081 cttttcggag tctctcagtt tttattttca taatgatttt tataatacag tacgtattca
     1141 ctccgggaat acctcctgga atttgtctga tttaattcaa aaataccatc ctgatttgat
     1201 tgtgtatgaa aaagtcgagc gtgatttgct ctatccactc gtcaattttc aaactacagc
     1261 aaatcaagtg aatcttgaac tccctaaaca ggttttaacc gccaggggag gagtcgataa
     1321 attcaagatt ggcccagata caatctcagt caatggctgg gcttatattc ccgatttaga
     1381 tgctggaaat ggggaagtgt ttttaaagtt gtcgatggga actcatactt atttatacag
     1441 tatgaataaa atgcaaaaac aaagtgttaa tctggctttc aaacaggatg gtaagcatct
     1501 tgatttgtca ggatttaatg gaactatctc gcgtaaggat ttgccttctg gcctatataa
     1561 agtatcactc attgtcgtaa acgacgaggt gatgggcgaa acggagcttc caggcactta
     1621 tactttgagt tagatgggat ttttataatc gagctggaag caaattggct accgggcaaa
     1681 aagaaatttt aatggaagct aaaaaggagt tgcgattatt agcaaaagac aaaacccgtt
     1741 accattaaat aaatactggg aacacttcat tcacgaggca gatattggag ttcgtggcat
     1801 cggacctact ctcccagatg cctttgaaat gggagctttg gcattaacga atgtagttgc
     1861 agatgcagcc ctaatcaagc cttctttatc aataaaaata cattgtgaag cacccaatga
     1921 agaaatttta tttaccgatt ggctaaatgc cgtggtctat aatatgcaaa ttcataatat
     1981 gctgtttcgt gagtttgatg taaaactcaa ccgcttcgtt ttggatgctg tcattagggg
     2041 tgaaaaggtt gatcaaaaaa agcatcaacc agttgtcgag gtcaaagggg ccacctatac
     2101 tgaattaaaa atatacaaaa ataatggcat ttggatagct caatgtgttg ttgatgtata
     2161 aactccttaa caggaattaa tgtggtgaac agtgatggat ttaagtcttt tgaaaaaaat
     2221 aaatgatttt gaatggcaaa taccgcaaca tggaaagatg ttggtgccag gagttatttt
     2281 cgcttcagaa cagctgattc ttgatatgga tatgaaagtt tacgaacaat tatctaatgt
     2341 tgctactttg ccgggaattg tttctgctgc ttatgctatg cctgatgcgc attggggata
     2401 tggttttccg attggcggtg tcgctgcttt tgatccggat gatggagggg ttatttcagc
     2461 aggtggcgtg ggttttgata tttcatgcgg agtgaggctc ttatctactg gattgaagcg
     2521 agatgaattg gagtctgtca aagttagcct tgcagacgct ttatttactc atattccagc
     2581 tggagtaggt agtagaggcg gcattcattt aactatcaaa cagctcgatg atatgatgcg
     2641 agggggtgca cagtgggcag taaaacaagg ctatggtgaa gctgctgatt tagagcgtat
     2701 cgaggatcgc ggttgtgtgg aaggagctat ccctgatttt gtctctgagc aagctaaaaa
     2761 gcgccagaaa aatgaaatgg gtaccttggg ttcaggtaat cattatctgg aagtgcagga
     2821 agtcaggcaa atctactgtt ccgatacagc aacagcttta aatttgcatg aaggagatat
     2881 tgtagtgagt atccattgtg gttccagagg attggggcat caaattggta cagattacct
     2941 ccgttccatg gttattgaat cacaacatta tggtatcaag ctggcggata gggaattggc
     3001 ttgtgctcct attcattcaa agctagggga aaattacctg ggcgctatga gagcaggaat
     3061 taattgtgct ttagccaaca gagaaatcat cactcatttt atgcgcaatg tgtttcagga
     3121 tattttaccc cgcactcaga ttgatctaat ctatgacgtt tctcacaata cttgtaaaga
     3181 agaatttcat gaggtagatg gcaagaaaaa gcgcttattt gttcatcgaa aaggagcaac
     3241 tcgtgccttg ggcccaggcc atccacaact acctaaagct gtttctcata taggccagcc
     3301 tgtgattatt ggagggagca tgggaacagg ttcctatgta ttagcaggcg tcaaaggttc
     3361 tgagcataaa tcttttagct cggcatgtca tggagcaggt cgcgctatga gtcgtcatca
     3421 ggcaatgaag aaatggaacg ggaaagacat agtagataaa ttggctcaac aaggaatttt
     3481 aattcgtagc ggatcatacc gtggggttgc tgaggaagct ccgggggctt ataaagatgt
     3541 tcattctatt gtcgatgccg ctgaaatgtc gggtttggca aaaaaagttg ctaaattaat
     3601 tcccatcatt tgtgtcaaag gttaacaatc cattgtttat tgaggtgaaa ggagcagctt
     3661 ataattgtaa ggaatttgta aaaaaaatga actcaaaata attttcgata aatttttaga
     3721 ctaaaattag ctcaacaagt gcgaggagat atctataatg agtgcaaaac aaaaagagct
     3781 tgagagatta ctcgaattaa agaaaaaaca ggaagaacag caagttttaa atcagaagga
     3841 tatgctggag cgaataaagc tcgagaataa atatatggaa tttttgcaga tgaccagcca
     3901 gcaaatggaa gaagaattaa agaaaagagg tcctgtaaaa gaagttgaag tgaagggtaa
     3961 agatattgat cccattattg cagactacaa aaagctttat agtaaggaaa gttggtataa
     4021 agaacccgaa acgaaagacg gaaaaactca tttgactttc ccgtctcagg aagcagcagg
     4081 taccttcttt aaagatcagg ctgaaaaaaa cagatctttt attgttattg acgctgcaac
     4141 caataaagtg cttgcctatt ctaatggcga tggaaaacta tacaatggga atggtagcct
     4201 ttatcaaggc ggtgacttca aggcgtcaaa agaggatttc actagcttta aaatgcctga
     4261 aagagaagag cctaaaatgg gtatgcaact ttaatctgct ttgatttaaa tcggatttag
     4321 tgccgataat cattttatga ttgttttttc tcttttttaa ataaaaacca gactgacttt
     4381 ttttgacgtt aattgtcaaa tatcatatca tgtaatctga aaaagtttaa gctttatcaa
     4441 atattaccaa ttctggaaac tgtacccaaa tttcttgggt atggcttgcc tttttcataa
     4501 gagaaaaaac atgctaacta ttaatagaga aaaatttgag gaaattaaaa accagctaaa
     4561 agagaaacaa ttagtttgca atcaaattgc gcaatggaaa aaaactccgc tgtggttgag
     4621 agaaatgact catcagccag agattccccc caatttttta aacgaattaa gacagattcg
     4681 ggatgctatt gtatcctttg agattgataa aaatacctta ggtttggcag tgttttataa
     4741 tgagttgtat aagcttttag ctccatcgta caatgtatta acaccaattg ataccgatca
     4801 tatgaataat catgtgcttt tgcttcagag aattagcaac tatgcgggta aggtagacga
     4861 gcatataaaa agtttgtcag cgagtgaagt aaagcatttg gattacgctg agttttggtc
     4921 tctgcttagt gagacatgtt ctattcaaga ggtagacagg cgcaagcagg caaaggaaaa
     4981 attttcccaa agtatattct tacgtttgtg ccagtacaat ccgaaaattt acctggatgt
     5041 tgctactcgt ctggaagaac ccgctgagca aagcaatact ttagattttt aaatgattag
     5101 ttagagtaag gcatggggag agccttgctc tcattaactg atttattgtc ttttgtacca
     5161 tttattatcc tggttaattt acctgaaaca aaatataaca aggcagcaca gagtaaagac
     5221 caaagtccca attgcttaaa tgcggttaga aaatcctgat ttgtaattag ggggtctacc
     5281 gattctgatt gcaccatggc attggagaaa tattgggaaa aagaggctgc tacacctata
     5341 accagcatcc aggtacccat taaaatccct tgtagtttcg ggggagctat tcttccaatt
     5401 aatgcatagc caacagggcc aagaagtaac tcagacattc cttgcaagat atgatggcct
     5461 atgatccagt atatgctgat atacccatag gaatttgaac aaataattcc aaagataagg
     5521 cataaaaagg acagggctaa aaacacgaag gaacaggaaa attgcacagg agcagagaca
     5581 tgaaaacctt ttgcttttaa tttgttaatg agcatggaca tgattggtgc tccgaaaata
     5641 atgaccacgg gattaatatt ttttatccat tgagtagcca attcaaagct gaaaagatgc
     5701 ttatccacat tatttttgac aaaaagagtt acacccattg ggccagttag ataaatcatc
     5761 caaaataaaa ccgaactgat tgccaaaatt aaatatgcca tcattttttt cctgtcggag
     5821 gaggattttt gttttagccc caggataaag ataataagaa acatgaataa acaggtaatt
     5881 attaccaatc cattacaaaa gtttgcaaat tcaaaacata cccgcataaa aggaataagg
     5941 aatgtaatga atgctattgc cagaatattt tttatgaaat accagtttcg tttagtgaga
     6001 ttgggtaatg gaaaattttt atcgccaagg taggcccagt ttttaataat aatcaataaa
     6061 gcaatggagt tagtcaggat gcttgcatag agcaaatatt gatactggtt ggagtaatca
     6121 aaaaaaccgc aggctatata acctatgcaa taaccgacat tcatgccggc ataactgaga
     6181 aaaaatgcgc tttccctgcg atcatcttgt ggtatgaaac attgagtaag catgctgttg
     6241 ctggaagtaa cattcaaacc agaacctacc ataaacaaac ttaagcctat gttaagcaag
     6301 gaaggatttg cttgcgctaa aaagaataaa cccatatttt gaataagaat agttgtaaca
     6361 aatagtagtc tgttacttat aaaacggctt ccgatgacac cgccaattag ttgaaaaata
     6421 tagctaaaac ttaaaaacag gcccactatg ctattggctg ataaattggc aattccaagt
     6481 tgtttggtaa taaaaagtgc gagcgaagaa tattgaacag cgtatgaaaa agttgaaaat
     6541 gcctgaatta agcagagcgc agcaactcca tgcggcattt cccgaattat tttaatcatc
     6601 aaacattttg gctgatttta tgagaataga ctttaccatc aataatcagt tgccttcaag
     6661 aatgtaacaa cctgccattc aatttctttc caaactttac tttagtaaaa ttaggaaaga
     6721 aacgttgatt aagcttcgtt tatcaaacct gtttgaattg tataggttat tttatttaaa
     6781 tgattccgca gaatattttt tctgttgaga gtcagatttc tctatatgat gaggcaatcc
     6841 attcgctgca tcggtatcaa aaaacctcag ggaacagggt aattctattg tgggttcttt
     6901 tttaacaaag caaaaaaatg ttgctttagc aacatctgtt gcaggttaac aattcattag
     6961 gttttttgca gaatttgcta caattaaaat tcaggaagaa gccaattaaa ggagataaag
     7021 gtgaaatcta ttgcgaataa ggaaaatgag gtggcaataa ttcataagct cattgaagag
     7081 tatgccaatg cagcacgcga taaagacatt gataaaatca tgtcttacta tgcaccagat
     7141 attcgttctt ttgatgcagt ttcacagctt cagtttaagg gagctgatga ttatagaaaa
     7201 cattggcaaa cctgtctttc attctgtccg ggaccttcag tatttgaagt acatgagttg
     7261 gaaactttgg ttgataataa tctggcggtt tcctattatt tgacttattg tggtggaacg
     7321 aacgaaaaag gtgaaatgca aggaggttgg atgcgaggta caatggtaca ctgcaaaatg
     7381 aatggaaaat ggaaaatcat gcatgagcat tattctgttc cctttgatat gaaaacagga
     7441 aatactttat ttgatttaaa accataagat gtgattctat tcagtcacta cgtagttaac
     7501 taaagtatag ggtttattga tatgagtctc aggatattgt ctttaagcga tgtaaagcag
     7561 agcatcacca tgcatcaggc aatcagtgct ttggaaagcg catttattca attggcaaat
     7621 aacacggtga agttgccctt gagaacgggt gttaccattg aggaagaaaa cggattaatg
     7681 ttgactatgc cgggttatct tgcccaagaa aaaagcttag gcttaaaagt agtatccatt
     7741 tttcctgaaa atttgactaa aaataaacct actatcactg gttttattat gttgcttgac
     7801 gcaacaacag gtgaagctaa agtattaatg gatgctgctt acctcacctc cttaagaacg
     7861 ggcgctgttt caggactggc gacaaaatat tttgcacgcg ataatgcgac tcaggtcgcg
     7921 atcattgggt caggtgctca agcgaaaaca caacttgagg cagttgcttc tgtgcgagat
     7981 atacaacagg tttttgtttg gtcgcgcaat attaaaaatg ccgaaaaatt tgctaacgaa
     8041 ttcgaagatc aatttgatat gacaatttgt ccttctgtcg ccatggcagt gaaagatgcc
     8101 gatattattt gtacagcaac caatagcaca gaaccactga ttcattttgg agacatttcg
     8161 ccacatgccc atattaatgc cataggctcg catcaccctt caatgaaaga aattagccat
     8221 gatgtgttaa gccgagcagt ggtgattgct gatcagttag acgctgtttt agctgaatca
     8281 ggggaaatca ttagtgcagt agagcacaat catttaaaaa aggaattgat tattgaaatc
     8341 ggtcactggc tattacaaaa aaatactgac tataaagata agcttacagt gtttaaatcc
     8401 gttggtttgg caatacagga tttaagtgtt gctgaagcag tttatcaaaa tgcattgaaa
     8461 aataatcttg gtgagatctt ttctattagt tagtcagggc aacatttatg agagtgagta
     8521 taaatgagtc atcctgggaa aaagaaaata cttttttcaa ttttatattc cttacgtcat
     8581 ctgattgctc tactggttat gtcagtgggt atttatttaa ttaagacagt aacagcaata
     8641 ttgtatcttc cctctgatta ttcaacgctc ccacttttgt ctttgtgcgg tgtcttgtgg
     8701 ttatccaatg attttttctt acgttttata ttagttgtta attttattat caagccattt
     8761 tttctctatt taggagtttt attttgcttt tattatctgc ataaaaaatg ttgttcatag
     8821 atgcggactt caagtctcaa gtccgcagca attctttgat aaaagcattc cacatcaata
     8881 ctgttgtaca gctaaaaaga actgatcatt gaaaattatt gatgccttga tatcactcat
     8941 caaaaaattg aacttctcct gtctcaagct gatataaacc accaacaatt gcaattcttt
     9001 tttcatcaag caattgatgt acgatattac tgcgttgttt aatttcattc atagtatgtt
     9061 ttacattcag gctggtaacg caattcaaaa attctgggct atgaacatcg tgttttgaat
     9121 ccagcttttt ggcttcttga atcacagggc tgattttatt cagtagattt gtcaggttgc
     9181 ccaatttgac accatcacaa gctcctttaa ttgctccaca ttgagtatgg ccgacaactg
     9241 caatcagttt cacacctact acctgacatg caaattcaat gctgcccaaa atatcatcat
     9301 ttaaaatatt accggcaact cgaatactga aaacatcgcc aaggccttgg tcaaaaatca
     9361 actccgctgg agtacgtgaa tccatgcaac ttaaaataac agcaaatgga aattgtcctt
     9421 gtgacgtctc attaacttgc tggagcaagt tgcgatttaa cttaagatta ttaacgaaac
     9481 gcttgttacc ttcttttaag agctcaatag ctttctctgg agtaattgct tgttgttgtt
     9541 ctttggttaa agtccacatg atttaaattc ctattaattt aacttgaata tttttggttt
     9601 ttgaattcaa tatgaaattt tgaatgactt ctttaatatc atgatcaata attttagagc
     9661 gagacccatc aataactacc tcggcacctt ctggtatatt ttttaattcg ttgattatac
     9721 ttcctttgtt taaaaaagtt acctcttctg ccagtttaag gcagtattgg gttttgtttt
     9781 tgccacgggt tttaatcata tcatgtgaat taagaaagtg atgtcgcaag ataataaaaa
     9841 tagctagtga aaatcctagt gtaattccga aaagtaaatc gctaaaaata atcccaataa
     9901 ttgtaatcat aaagggtaca aactgttccc atcccatttt atacatttgt ttgaataaag
     9961 ccggcttggc taacttatag cctataataa tcaaaatact agctaatgat gcaagtggaa
    10021 tttcattgag tatttctggt atgctgatga cacaaataaa aagtaataag ccatgtaaaa
    10081 tagcggacag cttggatttt gctccaaaag cgacattggc actactacgc acaataacct
    10141 gtgtaatcgg tagtccgcca atcaagcaag agagaatatt tcctactccc tgggctttta
    10201 attcacggtc tgtagacgtt actctcttgt agggatccag tttatcaacg gcttctacgc
    10261 agagcagtgt ttccaaactg gcgattaggg caatgaggat tgctattttg tatattttca
    10321 aatgagtaat tagcgaaaaa tctggcagtg ttaaataatt aaataattcg gatgctttgt
    10381 taaatttcgg cagttgaacc agttccgatg gatcaaggga aaaactggtt aatcggtgtt
    10441 cataaaacaa gttcaaagca attcccagga tgaccacgac aagggggcct tgtatcattt
    10501 caaacagttt gtgttttttt accagcttct cccaaaaaat cagggttaaa agagaaacaa
    10561 tgctgataat aacaacctca ggattaatat catccaatgc ttctctgatg tcattaatat
    10621 ccaattcacc atccgacata ctcaatagaa gtggcgtgac gtcgtgccct aataaatgag
    10681 gaatttgttt taaaacaata ataataccga ttcccgtgag catgcctttg attacggagg
    10741 agggaaaata gtaagcaata attccacctc gcagaaaacc tgcaattaat tgcaatattc
    10801 cagcaattac cccagctaac aaaaaagctt cccagctgcc taatgtctct acagaggaaa
    10861 tgactattgc tacaagtcct gctgctggcc cgctcactcc aagcgctgag ccgctgataa
    10921 accctacgac tactccacca ataacaccag caataattcc tgaaaaaaga ggaacatgtg
    10981 aagctaatgc tatgcccaga cacaaaggta aagccacaaa aaaaacaaca atggatgctg
    11041 gtaagtcgtg tttgagatga gcaaataaac catgcttcat aatggcctcg tatttagtta
    11101 tccgcttgaa ctccaggaaa gaaaaagtgc
//
LOCUS       DACVWI010000099        11099 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.099, whole genome shotgun sequence.
ACCESSION   DACVWI010000099 DACVWI010000000
VERSION     DACVWI010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 11099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11099
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.099"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            56..301
                     /locus_tag="JBH85_09390"
     CDS             56..301
                     /locus_tag="JBH85_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946414.1"
                     /translation="MNVHSMCFSRVLRYAAVTSLLFMAVSFTSVANAAQGCGEGYHRA
                     IHNGTCVLNYPGAFATPAPAHPGCWRNMWGQLRCYRY"
     gene            complement(403..1440)
                     /locus_tag="JBH85_09395"
     CDS             complement(403..1440)
                     /locus_tag="JBH85_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAU0946415.1"
                     /translation="MLFRHKGILYLFLSSLIISAANPVIAKLITLGNEHLVNGRNPIS
                     FCNVLFAGNFIAVLTLILIHFRELKEFQPEHLTAKNWCLIFLAALFAGFLTPTLFFLG
                     LMYTNVINVVLISNLQIPMTLLAGWIFLGEVPNIRVTTGAFLATLGVFAIVILQYWLG
                     GAGALTPNPEMKTGPLFIFLSSIPRSGEICIFLAVVSSTASTIIGFHALRRLPHYLFS
                     ILKMLLGLVLFFFIVISMFGWHHFADLFSPFLWEWMLFYGSVIIALRYYFSMLGMKHA
                     KVAEVAISSSIIPLMSIIFSYLILGEVPGISQIIGGSLILFGIYVALTGKLQAPEKTE
                     ILEKPSGFSGV"
     gene            complement(1811..2581)
                     /locus_tag="JBH85_09400"
     CDS             complement(1811..2581)
                     /locus_tag="JBH85_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1158 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946416.1"
                     /translation="MIIYLSIWLIIGMKELIAFIHDLYKDRTEKSVKFESKGRVIVSP
                     LMSKDDAQELFKSLKEILPEEARLKVRKSKQEPDQFRVVLFNPEKFFSFYAEHAAELL
                     NRFKPLPTSSSGEEYCKWKYNPLSHLIEYTVPFSILDSDTKAKVTDTHEEAIQSKVNQ
                     YNEKLRSIYPNLKIIGTNSVEDSSPDKFFLGSFNYNDYKIIKNLNNPASLRQLAIGFF
                     KEHPGHYTEEVAKKIPGDMKDEFTDIEPSSTKPSSTGS"
     gene            complement(2693..3457)
                     /locus_tag="JBH85_09405"
     CDS             complement(2693..3457)
                     /locus_tag="JBH85_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0946417.1"
                     /translation="MGYSIINKNRSIKIILMIFIGITTFVKAYAYSPDTSNPIQRNRS
                     LAEVNSRHPGEVIVLIHGLMRTYVSMKPLKAYLEAQGYQVYLYKYPSARYNIQEHGVY
                     LNQFITTILENNPAIKIHFVTHSLGGIIVREALSKLSQKQLKHVGYLIMLAPPNQGSK
                     LAKFSIKLFPMISYFIKPLAELSSEQTSYVHRVPVPDIKMGIIAGRFDAKVPPDYARL
                     QGQTEQVIINNTHTFIMYDSKVKKLVLSFLEKGKFE"
     gene            3863..5059
                     /locus_tag="JBH85_09410"
     CDS             3863..5059
                     /locus_tag="JBH85_09410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HAU0946418.1"
                     /translation="MLEYLTWITANIVLVSNSIFGTPHPVHAQLQVPQCLAAKMTTAH
                     DVLAENEQFKIIDLPGSDIENVTLLAEQVNCGDFIDVTDKFSDTLLTAKRKSAKNILQ
                     SSALTALKKSQEDKNIYEIKHQKEVNAAIKEVVADNIWQTLNHLTSYSNRSATKDTGV
                     AAANWLKSEFETMAMEYNRRDTATFLVKAGWYKQPSLVTVIGKELKTPAIVIGAPMDT
                     LDGNMPGADEGSGAAAIMESTRILLASKLKFKHPIYIIWYAASDRNLAGSQYVVQYFQ
                     EKSIPVKAVLQLNKTGFRANSDDSTMWVFTDNTNNDLNQYIAKLIKNYIHTPVNFSQC
                     NYECGDHISWSQENIPVTYAVESDFKNLNPYIGSSSDTMDFLNLEHIANFSKLAIAFS
                     IELGSK"
     gene            complement(5117..6796)
                     /locus_tag="JBH85_09415"
     CDS             complement(5117..6796)
                     /locus_tag="JBH85_09415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate decarboxylase"
                     /protein_id="HAU0946419.1"
                     /translation="MCSIGEYLAKRLEELNISEYFAIPGDYNLILLDEVLKNEKIKMI
                     NCCNELNAGYAADGYARVKGVSALFVTYSVGGLSVVNAVAGAYAENLPILVISGGPNT
                     NSIQDAEILHHTLATEDNLYVRDIFSRITAHVVCIRKPEQAAMQIDEAIAIAIAKKKP
                     VYIEIACNIANYPISKPTQRAFNTYKISDSSSLAAAVEHAAEKLNSALKPSLIVGSKV
                     RHCNAINSVSELAKCTGYAMAAMPDAKGFISEQHPNFIGIYWGPVSSSGCAEIIDSSD
                     AYLLIGPNENDYTTVGYVWGINPHKSIKTTKGGVIIGETVYTNIFMNDFLRELSKKLK
                     FNDASYKAYKRIAEETVVYPELDQPDAPLSSRYLFGQIQKMLSDKKALLAETGDSWFN
                     CMRLSLPEGCPFEIQMQYGSIGWSVGALLGMQAALHNQKRVIACIGDGSFQMTAQEIS
                     TMIRYGYKPIIFLMNNACYTIEVQIHDGPYNVINNWRYAELVNVFRGEQSNAKSFVVK
                     TNKELLTAIKQAEKTDALCFIEVFLDKDDCNKNLLEWGSRVANYNSRPPRR"
     gene            complement(7036..8118)
                     /gene="ravQ"
                     /locus_tag="JBH85_09420"
     CDS             complement(7036..8118)
                     /gene="ravQ"
                     /locus_tag="JBH85_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavQ"
                     /protein_id="HAU0946420.1"
                     /translation="MMRMFSVRRNLSAVMRKDLSLTSRPLLQAPLLKSTVNPQNTLKT
                     KELKERKFTETLPDSRFFSKLKLAEQDQFSHRKRKRFNYQKNFSAALSLPYSRKELDV
                     HRDEEDALLSMVKQYVIEHANRRVDLFFYTLIAYYNTEIVPTNGYTDLQHGRGRNTNR
                     GITITEACHSSLTPSLLDSTIYQNKGRLKHKSLLSGTHFMDSLNATVELPPFVNDFDD
                     ILEKACRKKCLEILHEVSLGRINPMEGLTLFLKIMQDILIKFKEEAASENQSALLQNS
                     LIRKKFISPNLVDLVINGTLSTTFSDSTQSASDDYIQLLLRMTSEEKALCEKDEKGKI
                     KLYLAKIMDIQNEILTSKNGEFVPGL"
     gene            8604..10091
                     /locus_tag="JBH85_09425"
     CDS             8604..10091
                     /locus_tag="JBH85_09425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAU0946421.1"
                     /translation="MQNKLLQFICIKKLYKQKQSYKSIIKFASLPLAKKQIMCSIALL
                     FVIKLSWATHHYDTIIIGAGVSGLTAAHHLHKAQQKVLIIEAKNRLGGRVYTSYDWGF
                     ATDLGASWIHAIENNPLMPLIGKQSIIINTYSNSDPVAMLNNYALYDSEGKPVSKQTQ
                     TLFSSLTKEFLRYCQTRNQMISFAQNLTTFAKQKKLTSEQLALLSYALENIYTYEFAD
                     NLTKLSRNVHSASEASIASGKNALVPEGYFQLFRPLTQHVPIHLNQIVSQINYGADGV
                     NIITQHEKYHANQVIITVPLGVLKANAIKFHPALPKDKRTAISQLGMGSYEKLYLLFD
                     KVFWDKDKEWIGMLPQNEQEAFNIFNYYKYTKKPVLIVFTSGKLAHDMEKEHLTEWVM
                     QHLRRIYGSNIPKPIKNKKTHWGSDPFTRGSYSYLPVNVDKSVIGILAQPVANRLYFA
                     GEATSTTDPSTVHGAYLSGIRAAEEVLASIKHSGKNREKDKAVNS"
     gene            9991..10947
                     /gene="ravP"
                     /locus_tag="JBH85_09430"
     CDS             9991..10947
                     /gene="ravP"
                     /locus_tag="JBH85_09430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavP"
                     /protein_id="HAU0946422.1"
                     /translation="MALIYQGYAQQKKYWPASNTLEKIEKKIKLSTHKPILILEKVMY
                     TKRDNHLLINKEEEQEENQKTVFVPQTNSLALPETQSYFCTAEQCSLNNPYAPAQGYT
                     RPDSLHFKTTPINSEIYEQVFKVSEETVKTETQFANRAPGHLEKEENRSGDWSGFIPD
                     ELYQMMMEAAKQGIFVSFLLTLTDEIINDYLKNHHYSQQQINWISQGIRALTLIAIGT
                     SPGIALGLPISTLLLIEQLGFDKTNVNYLTTSSVVAWGLLSSPFNLLNTSLVMASSIG
                     ASVLTSKITQSSYQLVRNRFFSSKPEKEELEQENILQKTIQQ"
BASE COUNT         3680 a         2152 c         1912 g         3355 t
ORIGIN      
        1 ctctatactt atgctgtatg ctaaaaaata attgaagcaa cataaggaga gtacaatgaa
       61 tgtacatagc atgtgttttt cgagggtgtt acgttatgct gctgtgacaa gccttctgtt
      121 tatggctgtg tccttcacat cagtggcaaa tgcggctcag ggatgcgggg aaggttatca
      181 cagggccatt cataatggta cttgtgttct aaactatcca ggcgcctttg caacccctgc
      241 gccagcacat ccaggctgct ggcgtaatat gtggggacaa ttgcgttgct atagatacta
      301 attcaaactt gaaaatacaa acatatcaaa ccttatttct tgctgttata tttttgatat
      361 aactagcaaa aataaggttt tattcataga aaaatagtca ttctaaacac ctgagaaacc
      421 cgaaggtttt tccaagattt cggttttctc gggagcctgt aattttcctg ttaaagcaac
      481 gtatatcccg aacaaaatta aacttccacc tatgatttgc gaaataccgg gaacttcacc
      541 taatatcaaa taggaaaaaa taatagacat cagaggaatt attgatgaac tgattgcaac
      601 ctctgcaact tttgcatgtt tcatgcccag catactgaaa taatatcgca aagcaataat
      661 aacactccca taaaagagca tccactccca taaaaatggg gaaaaaagat cagcaaaatg
      721 atgccagcca aacatagaaa tcactataaa aaagaataaa acaagcccca ataacatttt
      781 taaaatacta aacagataat ggggtaatct tctaagtgca tgaaaaccaa taatagttga
      841 agcagtactg gaaactactg ccaaaaagat acaaatttca cctgaacgag gaatagagct
      901 gagaaaaata aaaagaggac ctgttttcat ttcagggttt ggagttaaag cacctgctcc
      961 ccccagccaa tattgaagaa taactattgc aaatactccc aaggtagcta aaaaagcccc
     1021 tgtggttact cgaatattag gcacctctcc caagaaaatc cagccggcta ataaagtcat
     1081 agggatctgt agattggaaa taagaacaac attaatcaca ttggtgtaca ttaatcccaa
     1141 aaaaaataag gtgggcgtta aaaaacctgc gaataaagca gccagaaaaa ttaaacacca
     1201 atttttcgct gttaaatgtt ctggttgaaa ttcttttagc tctctaaaat gaattaaaat
     1261 caaagtgagc actgcaatga agtttccggc aaataggaca ttacaaaacg aaattgggtt
     1321 acgaccattg accaaatgct cattcccaag agtgataagt tttgctatga caggattagc
     1381 agcacttatt atgagcgaac tcaggaataa atatagtatt cccttatgtc gaaacagcat
     1441 cttaatttcc cccccacatc cttatcaagg ctttaatttt gtacactcaa ttttacctgt
     1501 atctacatct tttttcaggt gagagactgc aatcaatagc atatcttgat tagccccccc
     1561 ctgatgcaca atcaaataac atggatagaa tatgcacgat tttaataatc ttatcttgcg
     1621 aatcaataca taaaatttct ttagatttct taagtgcagc taaaaattta ctttataaat
     1681 ctcccttaca gcacaataca cgtcaataag agaagataaa aggaaagaat acaattaaat
     1741 ccaggtttat ttacaagata aaaaaccaca gtttctattt atccgttgct cgtctatgct
     1801 caataaaaaa ttagctgccg gttgacgatg gtttagtgga agatggttca atatcagtaa
     1861 actcatcctt catatctcct ggtatttttt tagcaacttc ttctgtataa tgaccaggat
     1921 gttctttaaa aaatccaatt gctaattgac gcaaacttgc aggattatta agattcttaa
     1981 tgattttata atcattataa ttaaaagatc ctaagaaaaa tttatcagga ctagagtctt
     2041 caactgaatt agttccgata attttgagat tagggtaaat cgaccgtaac ttctcgttat
     2101 attgatttac ttttgattgt atagcctctt catgagtatc tgtaactttc gcttttgtat
     2161 cagaatctag aattgaaaac ggaacagtat attctattag atgtgataaa ggattatatt
     2221 tccatttaca atattcctct cctgaagaag atgtcggtaa tggtttaaat cgatttaaca
     2281 gttctgcagc atgctcggca taaaacgaaa aaaacttttc aggattaaag agaacgacac
     2341 gaaactgatc tggttcttgc tttgacttac gtacctttaa tcgtgcctct tcagggagta
     2401 tttcttttaa tgatttaaat aattcctggg catcatcttt actcatcaaa ggagatacaa
     2461 taactctccc cttggattca aattttacag atttctcagt acgatcttta tacaagtcat
     2521 gaataaaagc tattaattct ttcatgccaa ttatcaacca tattgataaa tatataatca
     2581 aatttagata taattaatta acatgtcaat ttttacactt ggatttttga caataaaagc
     2641 tggatagaat acttaattaa gccaatacta gccgctgact ataactaaaa aactattcaa
     2701 atttcccttt ttctaaaaag ctcagcacaa gtttttttac ttttgaatca tacataataa
     2761 aagtatgcgt attattaata ataacctgct ctgtttgtcc ttgcagacga gcatagtctg
     2821 gaggaacttt agcgtcaaac cgcccggcga ttatccccat tttgatatca ggtacaggaa
     2881 cacgatgcac ataagatgtt tgctcagaac ttaattcagc caaaggtttt atgaagtagg
     2941 aaatcatcgg aaatagttta atagagaatt ttgccagctt cgaaccttga ttaggaggag
     3001 ccagcataat gagataacct acgtgtttta attgtttttg agataatttg gataatgctt
     3061 cccttacaat aatgccacca aggctatggg taacgaaatg aatttttatt gccggattat
     3121 tctcaagtat tgttgtaata aattgattta aataaactcc atgctcttga atattgtatc
     3181 tggcggaggg gtatttgtac aaatagacct gatatccctg agcctccaga taagctttta
     3241 atggcttcat actcacatag gtacgcatta aaccatgaat taatacaata acctctccag
     3301 gatgcctgga gtttacttct gctaatgaac ggtttctctg aattggatta ctggtatcag
     3361 gggagtaagc ataagccttg acaaatgtgg ttattccaat gaatatcatc agaattattt
     3421 ttatgcttcg atttttattg ataatggaat aacccattat tatctctatt attgatttga
     3481 ataaaattat tctttctata gataaactta aaatgattat taatcaagaa tatccattca
     3541 attattgcat tgagttgagt gcaaactaat tcagcatgaa aataaaacca gcaaatgagc
     3601 ttatgattgc cttatcagat aaaataaacc acatatttcc caactaaagg ctaagaaatt
     3661 tttcaagaat aaaggtgtta attttgttaa ttttgtagta tatttgtcca cgctattttg
     3721 gagataaaac acatgacaag taaattggtc atttacaata tacagaaaaa ataacgaact
     3781 ctccaaaatt attttttaat acttggaata atgtgctttg cccatgaatc gatacggatt
     3841 ctacagttgt ttaggagtgt aaatgcttga atatttgaca tggattactg ccaatattgt
     3901 attagtgagt aattcaattt tcggaacacc acatccagtt catgctcaat tacaagtacc
     3961 tcaatgtctt gctgcaaaaa tgacgactgc gcatgatgtc ctggctgaaa atgagcaatt
     4021 caaaatcatt gatctgcctg gcagcgatat tgagaatgta actcttttag cagaacaagt
     4081 gaattgtggc gattttatcg acgtaacgga taagttctcg gataccctgt tgaccgccaa
     4141 aagaaagtca gcaaaaaata ttctgcaaag cagcgcatta actgccctta aaaaatccca
     4201 agaagacaag aacatctatg agattaaaca ccaaaaagaa gtcaatgctg caataaaaga
     4261 ggtagttgca gacaacattt ggcaaacatt aaatcacttg acctcctata gtaatcgttc
     4321 agcaaccaaa gacacaggag ttgctgcagc gaattggtta aagtctgaat tcgaaacaat
     4381 ggcaatggag tacaatcgca gagatactgc cacatttctt gtgaaagcag gttggtataa
     4441 acaaccctcc ctggtgacag tcattggtaa agaactgaaa acacccgcca tagtcattgg
     4501 cgcaccaatg gatactttag atgggaacat gcctggcgct gatgaaggta gcggtgctgc
     4561 tgccattatg gaaagcactc gtattttgtt agcctccaag ctgaaattca agcatccgat
     4621 ttatattatc tggtacgctg ccagcgatag aaatttggct gggtctcaat atgtagtcca
     4681 atattttcaa gaaaaatcta ttcctgttaa agccgtactg caactcaaca agacagggtt
     4741 tcgcgctaac tcagatgatt caaccatgtg ggtatttacc gacaatacaa acaatgatct
     4801 gaaccaatat attgcaaaat taataaaaaa ttacatccat acaccagtta atttttcgca
     4861 gtgtaattac gaatgcggtg atcatatttc ctggagtcaa gaaaatatac ccgtaaccta
     4921 tgcagttgaa tctgacttta aaaaccttaa cccctatatc ggcagctctt cagatacaat
     4981 ggattttttg aatctggaac atatagctaa cttttcaaag ctggccattg ctttctcaat
     5041 agagctgggc tccaaataaa aacacgtcaa atcattaata tcagggtagg cgattcttat
     5101 aattcctacc caagatctat ctacgaggag gacggctatt ataatttgcc actcttgagc
     5161 cccattccaa caagttttta ttgcaatcat ccttgtccag gaacacctca ataaaacaaa
     5221 gcgcgtctgt tttttctgcc tgtttaattg cagtgagtag ttccttgttg gttttaacta
     5281 caaaagattt tgcattactc tgttccccgc ggaatacatt aaccagttca gcgtaacgcc
     5341 aattattaat gacattataa ggaccatcat gaatttgtac ttcaatagtg taacaagcat
     5401 tattcattaa aaaaataatt ggtttatacc cgtaacgtat catggttgat atttcctggg
     5461 cagtcatttg aaatgagcca tctcctatgc aggcaatcac tcttttttga ttatgcaaag
     5521 cagcttgcat gcctagcaaa gcacccactg accaaccaat agaaccatac tgcatttgaa
     5581 tttcgaaagg acaaccttca ggcaaagaca ggcgcataca attaaaccag gagtcccctg
     5641 tttcagccaa caaagctttt ttgtcagaaa gcattttctg aatttggcca aacaaataac
     5701 ggctgcttaa tggagcgtca ggttgatcta actctggata gacaacagtt tcttcagcaa
     5761 ttcgtttata agctttgtat gaagcatcat taaattttaa ttttttactt aattctctga
     5821 gaaaatcatt catgaagata ttggtataaa ctgtttcacc aataataacc cctcccttgg
     5881 tggtctttat tgatttgtgg gggttgattc cccatacata cccaactgta gtatagtcat
     5941 tctcattagg cccaataagc agataggcat cactggaatc gataatttcg gcgcatccag
     6001 aagagctgac tggtccccaa tagataccta taaagttagg atgctgttct gagataaatc
     6061 ctttcgcatc gggcatagcc gccatagcat atccagtaca ctttgccaac tcgctgacag
     6121 aattgattgc attacaatgc ctaaccttac tacctacaat caagctgggc tttagagcgg
     6181 agtttaattt ttcagcagca tgctctactg ctgcagccag agacgaactg tcgctaattt
     6241 tataggtgtt gaatgcgcgt tgagtaggct tggagatagg atagttagca atattacacg
     6301 ctatttcaat atagaccggc ttttttttag cgattgcgat tgctatagcc tcgtctatct
     6361 gcatggcagc ctgctctggc tttcgaatac aaacgacatg ggcagtaatt cgagaaaaaa
     6421 tgtcccttac atacaaatta tcttcagtcg ccaacgtgtg atggagaatt tcagcatcct
     6481 gtatggagtt ggtatttggg ccacctgata taaccaaaat gggaagattt tcagcatatg
     6541 ctcctgcaac tgcattaaca acactaagtc caccgacact ataagtaacg aataaagcag
     6601 aaaccccttt tacacgggca tagccatcag cagcgtatcc ggcattcaac tcattacagc
     6661 aattaatcat ttttattttt tcgtttttca ggacctcatc gagtaaaata agattgtaat
     6721 cacccggtat agcaaaatat tcagaaatat ttaattcctc cagccgcttt gccaaatact
     6781 ctccaattga gcacatgtta atcccttatt aaataagaac tttttaaatt atagcacagc
     6841 caaaaatcag taggtggcaa gtgaatacct gctaaaaaat agagttcaca aggcatcaaa
     6901 ttgcagatga taatttaaat attctatctt ggagtatgtt gacaattcga tccagaaact
     6961 acatcccgcg tcttgggcgc gggattaatg gatgctgtgg acaaacaaac tggtcggcat
     7021 ttttgttaac acatcttaaa ggccaggcac aaattcacca tttttcgatg tcaaaatctc
     7081 attttgaatg tccattattt ttgccaaata caatttgatt ttgccctttt catccttttc
     7141 acaaagcgcc ttttcttctg atgtcattct aagtaaaagt tggatgtaat catcagaagc
     7201 gctttgagtg ctatccgaaa atgtggttga taacgtgcca ttaataacca aatcaaccaa
     7261 gtttgggctg atgaattttt tccttatcaa tgaattctgt aatagtgcag attgattttc
     7321 gcttgctgct tcttctttaa attttattaa aatatcctgc attattttta ggaaaagggt
     7381 taatccttcc attggattga ttcttccaag tgatacttca tgcaggattt ccaagcattt
     7441 tttcctgcaa gccttttcca ggatatcatc gaaatcattc acaaagggag gtaattctac
     7501 cgtggcattc aaactgtcca taaagtgagt tccggaaaga agacttttat gttttaatct
     7561 tcccttgttt tgatagatag tactatcaag caatgatgga gtaagactgc tatgacaggc
     7621 ttcagtgata gttatgcccc tgttggtatt acgccccctg ccatgctgaa gatcggtata
     7681 accatttgtt ggaacgattt ctgtattata ataagctatc aatgtataaa aaaataagtc
     7741 aacacgacga ttagcatgtt caatgacata ctgtttcacc attgacagca atgcgtcttc
     7801 ttcatcccga tgtacatcta actcttttct tgagtatggc agtgagagtg ctgcactaaa
     7861 attcttttga taattgaatc gtttacgttt tctgtgacta aattgatcct gttctgccaa
     7921 ttttaatttt gaaaaaaacc ttgaatccgg taatgtttca gtaaatttac gctcttttaa
     7981 ctctttagtt ttcagagtgt tttgagggtt aacggtactc ttaagcagcg gcgcctggag
     8041 taaagggcgg gaagttaaag aaagatcttt gcgcattact gcggaaaggt ttctacgaac
     8101 actaaacatt ctcatcatgg tcttctccct taatagccat tatgtcaccg tagtacctgc
     8161 tcaaagcatc aagcgtctgt ttttccataa agacacttaa acttacttag tgagagttca
     8221 cagtctggat gatcttcaaa gccagctccc tgtctaagcc agaacatata ctgtcttttt
     8281 acagtacata ataatcttta aaaaagcaaa cattaaaata acttaatatt gaatgcttca
     8341 tacagacaag ttaattgcta tgctgattat tatttacaaa tattgatact ttttttaata
     8401 tgcatcaatt caataccaag gatttactgt gtcataccag acttttttct cgacttgatc
     8461 gtcataattc aatcttgtgc acccgcatgc agccatgcaa atacaaaatt ctagccagtc
     8521 gaggttagat gcgaagcttg gttgggcaaa tcaatttgtc cggctaaacc tataaattaa
     8581 aatagcgatg taggaagaaa aacatgcaaa acaaattatt acagtttatt tgcatcaaaa
     8641 aattgtacaa acagaaacag tcttataaat caataataaa atttgccagt ttgcctttag
     8701 caaagaaaca aattatgtgc tccattgcat tactcttcgt tataaaattg tcttgggcaa
     8761 ctcatcatta tgacacaata attatcggtg ccggggtatc cggattaacc gcagcgcatc
     8821 atttacataa ggcacagcaa aaagtactga ttattgaggc aaaaaaccgc cttggaggca
     8881 gggtatatac cagctatgat tggggtttcg ccactgattt gggggcatcc tggattcatg
     8941 ccattgaaaa caacccatta atgccgctga ttggtaaaca gtcaattatt atcaatactt
     9001 acagtaactc tgatccagta gccatgctga ataattatgc tttatatgac agcgaaggaa
     9061 agccagtatc aaaacaaacg cagactttat tttcaagttt aaccaaggaa ttcttaagat
     9121 attgccaaac tcgcaatcaa atgatctctt tcgcgcaaaa tctcactacc tttgcaaaac
     9181 aaaaaaaact tacttctgaa caacttgcct tactgagtta tgccttggaa aatatctata
     9241 cttacgaatt tgctgataat ttgactaaat tatcacgcaa tgtccattcc gcatccgagg
     9301 catccatagc ttctggaaaa aatgcccttg tacctgaagg ctatttccaa cttttccgcc
     9361 cacttactca gcatgttcct attcatttaa accaaatagt tagccaaatt aattacggag
     9421 ctgatggtgt caacatcata actcaacatg aaaaatatca tgccaaccaa gtcattatta
     9481 ccgtcccatt aggcgtgctc aaagccaatg caatcaaatt tcatcctgct ttacccaaag
     9541 ataagcgcac agcaatctct cagttaggaa tgggaagtta tgaaaaattg tacttattat
     9601 ttgacaaggt tttttgggat aaagacaagg aatggattgg catgctcccc caaaatgagc
     9661 aagaagcatt caatatcttt aattattaca agtacacaaa aaagcctgta ctcatcgtat
     9721 ttaccagtgg caaacttgcg cacgatatgg aaaaagaaca tttaaccgaa tgggtgatgc
     9781 aacatttaag acgaatttat ggaagcaaca tcccgaaacc aattaaaaat aaaaaaactc
     9841 attggggcag tgatccattc acacgtggca gttattccta cttgccggta aacgttgata
     9901 agagtgttat tggcattctc gcccaacctg tagctaaccg tctctatttt gctggagaag
     9961 ctacctcaac cacagatccc agtactgtgc atggcgctta tctatcaggg atacgcgcag
    10021 cagaagaagt actggccagc atcaaacact ctggaaaaaa tagagaaaaa gataaagctg
    10081 tcaactcata aacccatctt gattttggag aaagtgatgt acactaaaag agataatcat
    10141 ttgctgatta ataaagagga agaacaagaa gaaaaccaaa aaacggtatt tgtccctcaa
    10201 acaaatagtt tggctcttcc tgaaacccaa agctactttt gtacagcaga gcaatgctct
    10261 ttaaataacc cctatgcccc agctcaaggt tatacaagac ctgattcatt gcatttcaaa
    10321 acaaccccta taaactcaga gatttacgaa caagtattta aagtttcaga agaaactgtt
    10381 aaaaccgaaa cacaatttgc aaatagagct cctggacact tggaaaaaga ggaaaatcgt
    10441 tccggtgatt ggagtgggtt tattccggat gagttatatc aaatgatgat ggaggctgca
    10501 aaacaaggca tttttgtctc gttccttctc actctcactg atgaaataat aaatgactat
    10561 ctaaaaaatc atcattattc acagcaacag ataaattgga tttctcaagg cattcgagct
    10621 ttaactttaa ttgctattgg tacttcacca ggaatcgctt tgggattacc gataagcaca
    10681 cttttgctga tagagcagtt gggctttgat aaaacgaatg ttaattatct cacaacaagt
    10741 tcagtcgtag cttgggggct attaagctca ccttttaact tgcttaatac ttcccttgtg
    10801 atggcaagtt ctattggagc cagtgtatta accagtaaaa taacacaatc atcctatcaa
    10861 cttgtgcgta acaggttttt ttcttcaaaa cctgagaaag aagaattaga acaagagaat
    10921 atattgcaaa aaacaatcca gcaataatcc accgcacaaa ctttaggaat tacgatggga
    10981 tttctgctaa aaagaaccca cttcttccca tgcttgggaa aaaataatca gagatcactt
    11041 cagattttat aaccaaaatt ctcaagcaca ggattaaaag attttaaatc attagttga
//
LOCUS       DACVWI010000100        10966 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.100, whole genome shotgun sequence.
ACCESSION   DACVWI010000100 DACVWI010000000
VERSION     DACVWI010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10966
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.100"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..683)
                     /gene="yaaA"
                     /locus_tag="JBH85_09435"
     CDS             complement(<1..683)
                     /gene="yaaA"
                     /locus_tag="JBH85_09435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HAU0946423.1"
                     /translation="MLTLLSPAKKLLSISKHYSKETSNPLLLDKALQLVKIMKLKSVE
                     QIADLMDLSKQLAELNYERYQNFDLKNNPMNHSYPALFLFQGDVYQGLNANSWKDEEI
                     EYAQSHLGILSGLYGFLRPLDRIQPYRLEMGVNLENPAGKNLYAFWSKIVTNILNQIL
                     AEQSNPVLINLASTEYFKVVDEKKLSYPLVTINFYEQKNSELKMIGILAKKARGMMAK
                     YIMQNRIDS"
     gene            complement(696..1256)
                     /locus_tag="JBH85_09440"
     CDS             complement(696..1256)
                     /locus_tag="JBH85_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HAU0946424.1"
                     /translation="MNKLPLFVFLMMVICLSSAQIYKWTDSQGVVHFSDKPHQGAEKI
                     KIPEAQTYTPPANETGGSSEQEQKSVKQEDQEKYTKLEIIQPQNEATIRNNQGYVVVA
                     VQIEPDLSPGDNVQLIFDGAPLGEPQPNLIFQLNGIYRGSHTIAVQVLNDKGDVLKVS
                     DSITIFMHNPRVGMGKGRKKNINSNK"
     gene            complement(1269..2678)
                     /gene="glnA"
                     /locus_tag="JBH85_09445"
     CDS             complement(1269..2678)
                     /gene="glnA"
                     /locus_tag="JBH85_09445"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HAU0946425.1"
                     /translation="MTKNVVLDAIKEHDAKFVDLRFTDIRGKEQHITIPVSAVDDDFL
                     ENGKMIDGSSFKGWQKIHQSDLALVPDLTSIKPDPFFQDNTLFIRCNVVDPQTMMGYD
                     RCPRSIAQRAENYLQSTGIADGVNFGPEPEFFLFDNVQWETTISGSFYKIDSDEAHWN
                     SGKEMEGGNIGHRPPLKGGYFPVPPVDSSHDIRSAICITLESLGMVVEAHHHEVATAN
                     QCEVATRFNTLTKKADELQILKYVIHNVAHNYGKTATFMPKPLVGDNGSGMHCHQSLY
                     KDGYNLFSGDQYSGLSETALYYIGGIIKHARALNAFTNPSTNSYKRLVPGFEAPVLLA
                     YSARNRSAAIRIPHVSNPKARRIEVRFPDPTANPYLAFSAMMMAGIDGIQKKIYPGQP
                     MDKDLYDLPPEELVDVPTVCSSLEMAMDHLRADHEFLLQGDVFSRDFINNYIQMKEEE
                     ITKIRSLTHPYEFELYYSL"
     gene            2775..3974
                     /gene="gspF"
                     /locus_tag="JBH85_09450"
     CDS             2775..3974
                     /gene="gspF"
                     /locus_tag="JBH85_09450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspF"
                     /protein_id="HAU0946426.1"
                     /translation="MGAYQYQALKVNGSISKGVIEADSERHARQLLREQGLIPTQVQT
                     LTQQRAASSKSKVSAADLALLTRQLATLLAAGIPVEESLRGVSEQTEKDKVRELIIGV
                     RSKVLEGYGLAQAMAQYPNAFPELYRATVGSGEQTGRLDVVLEKLADYTEKQQQTRQK
                     VQQALIYPLLMIIVSTAIISFLLTFVVPKIIDVFTESGQTLPPMTKLLINLSQFIKSY
                     GLYSLVTIIVALIGFKKSLSNIKIKTAWHQFMLKLPIVSYLVKTINVARYIHTFGILF
                     AAGVSVLETMRVSSSLVTNIVMRQAFDFATLRVREGSGISEALKETKFISPMAIHLIA
                     SGEKSGQLSDMMERSASHLDNEVNRLIETSLTLLEPMVILLMGAVVLFIVLATLLPIF
                     SMEQLVA"
     gene            4078..4500
                     /gene="gspG"
                     /locus_tag="JBH85_09455"
     CDS             4078..4500
                     /gene="gspG"
                     /locus_tag="JBH85_09455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspG"
                     /protein_id="HAU0946427.1"
                     /translation="MNRQKGFSLIEIMVVVVILGILASIVVPKIMGRPDEARKVKAKQ
                     DVLAIQNALDLYKLDNGSYPTTDQGLMALVEKPTSNPVPTNWKQYLKSLPKDPWGREY
                     LYLNPGQHTDVDVFTYGAAGQPGGTGINAEIGNWDDHS"
     gene            4418..4972
                     /locus_tag="JBH85_09460"
     CDS             4418..4972
                     /locus_tag="JBH85_09460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAU0946428.1"
                     /translation="MSLLMEQQDNLAEQGLMRRLVTGMTTHKGFTLIEILIVIVIIGI
                     TLGFALIAFGDFGESRRIQFSAEQLANTLSLAQQQAILESSTLGLKIDNSSYQILKFQ
                     DQAGWNPISNKGIFKLYYFPKNVVISLKTNLKHSRGNPAIIIAPSGDMTPFTIEFGTD
                     KEKWIAKLTGSHNGDLDFTMAKSQ"
     gene            4969..5346
                     /gene="gspI"
                     /locus_tag="JBH85_09465"
     CDS             4969..5346
                     /gene="gspI"
                     /locus_tag="JBH85_09465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspI"
                     /protein_id="HAU0946429.1"
                     /translation="MMPKTKLVSGFTLIEVLLALTVIAIALTALLKATAQNIDNTHRI
                     KEKTISHWVAMQGIAMIQLNLLRTSQSQESTQATTMLGQKWYWRAKISPTPIKRMQQI
                     TISVSSKQAGPFREELIAFRYLP"
     gene            5343..5960
                     /gene="gspJ"
                     /locus_tag="JBH85_09470"
     CDS             5343..5960
                     /gene="gspJ"
                     /locus_tag="JBH85_09470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspJ"
                     /protein_id="HAU0946430.1"
                     /translation="MIKNKGFTLIEILIALTVFAILATITSSTLYYAFNTRTRVNAQA
                     ERLNALQLAISIIQQDTSQTVERAIRGNEMRLFPIFVGQPQYLELTRDGVVNPNSTEK
                     RSTLERVALVCQDSKLLRRTWNTLDPIDRNIYKDKVLLDNLSECHFNYLNQNLQLLSE
                     WREQAVNQNQQREPLPKAIQMNLTLKDWGDMNMLFIIPGALYVYE"
     gene            5947..6915
                     /locus_tag="JBH85_09475"
     CDS             5947..6915
                     /locus_tag="JBH85_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general secretion pathway protein GspK"
                     /protein_id="HAU0946431.1"
                     /translation="MFMSSPPSKSIASSKMQGSALLTALFIMTLVAIVATAMSTRLQQ
                     DIYRTRLVIAQDKLYLASQAVTFWALNELLDKNNHFTKTNQLGMVAQYPKNMESIYNQ
                     VQLSGGIFDLQARFNLNNLIEKKSIPTLMHLISHAYSKATGQERANIALGVKHWLLAY
                     DLGRGEDIYTSYYLSQKPPYYPSHQLIKSKSEFRLIKDVSAPAYIALEPFITALPEST
                     SININTAPKQILMSLGDGLSDAQANELITARGENGITDLKEINELLKKFNIPSDQITV
                     ESQYYLSVAYAKNDEFSLVVYSLLKRSRDRKGKLLTSVIRESINNF"
     gene            7230..9608
                     /locus_tag="JBH85_09480"
     CDS             7230..9608
                     /locus_tag="JBH85_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0946432.1"
                     /translation="MINIIKNRNKKNHTASTELKSKIKKEQVKLLFDQVGMAISGEAL
                     TVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLFYYNKQPTLFSTEKWLFLFNL
                     GVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTAAANSLYSPVRLSYFLFLVTAF
                     VPFTIWLFSKGQVYLLLGFCGIIYLGIMLFISYYSNRILINTLKMRFKISNLNSTKDI
                     LEKKVADRTKELEKILALTKSTLESTADGILVVDLKGNIEFCNQQFLKMWGIAPGFID
                     SHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKDGKIFERYSQPHWLD
                     NKIIGRVWSFRDETLRTRLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVL
                     FLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPK
                     DVILIAQNILKAVAQPIKLPTQEVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKK
                     EGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRSGELVGAEALI
                     RWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACVQNKTWQLMGLPHISISVNVS
                     WRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKSTPIDSTLIKISQLGIKMA
                     IDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLA
                     EGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQKTKIRHSKFINKT"
     gene            complement(9747..10877)
                     /locus_tag="JBH85_09485"
     CDS             complement(9747..10877)
                     /locus_tag="JBH85_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HAU0946433.1"
                     /translation="MRSFLLALLLAINTVVLADELVGFAAFENGDYTTAYPHLMQAAK
                     EGNEEAMYLLGRMYQYGYGVTTNYEEARNWYQKAADKNNALAQLSLGFMYDTGKGVSQ
                     DFTEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFNWFKKAAEQGYSKAQV
                     NLGYQYMMGKGTPKDVKKAFEWYQKAAEQGDEKGEYSLGLLYTGQEGGIGADDKAAFY
                     WFSQAANHGHVNAQTYLAYYYLKGYGVDADPVKAAYWYQSAAEKGQPEAQAQLGQLLL
                     TGTGVDKDYQQAAYWFGKSAHQGNPIGQAKLGYMYLAGLGVNKSLVKAYAWLKIAAEN
                     KNEEAAKQLKSLEAKLTEPEKLEAEKMIKDLGPLESKENYED"
BASE COUNT         3431 a         2183 c         1929 g         3423 t
ORIGIN      
        1 atggagtcta ttctattctg cattatatac tttgccatca ttcctcttgc ttttttagca
       61 aggataccta tcatttttaa ttcactattt ttctgttcat aaaaattgat agtcacaaga
      121 ggataactca attttttctc atccacgact ttaaaatact cagtcgaagc caggttaata
      181 agcacaggat tactctgctc tgccagtatt tggtttaaaa tattagtaac aattttgctc
      241 caaaatgcat agagattctt acctgccgga ttttctaaat taactcccat ctctaatctg
      301 taaggttgaa tcctgtctaa aggccttaaa aacccatata gccctgacaa aattcctaaa
      361 tgagattgag catattcgat ctcttcatct ttccatgaat tagcattcaa tccttggtac
      421 acatctccct gaaataaaaa caaagcggga taagagtgat tcattgggtt gtttttaaga
      481 tcaaaatttt gatatctctc atagtttaat tcagcgagtt gttttgataa atccattaaa
      541 tcagcaattt gttccacaga ttttaacttc attattttaa ccaattgtag cgctttatcg
      601 agcaataaag gattactggt ttctttagag taatgttttg atatagataa tagtttctta
      661 gctggcgata acaaagttaa catacataac ctgctctatt tattagaatt gatatttttc
      721 tttctgccct tgcccatgcc gacgcgagga ttgtgcatga aaattgtaat actgtcgctg
      781 actttaagca catccccttt atcattaaga acctgaacag caattgtatg agatcctcga
      841 tagataccat tcaattgaaa aatcaaattg ggctgtggct ctcctaaagg cgccccatca
      901 aaaataagct gcacattatc ccctggagac aaatcaggtt ctatttggac tgcaacaaca
      961 acataacctt gattattacg aattgttgct tcattttgcg gttgaataat ttctaatttg
     1021 gtatattttt cctgatcttc ctgtttgaca ctcttttgtt cttgctcaga agaaccacct
     1081 gtttcatttg caggtggtgt ataagtttga gcttcaggaa tttttatttt ctcagcaccc
     1141 tgatgaggtt tgtcgctaaa atgaacaaca ccctgactat ccgtccattt gtaaatttgc
     1201 gcgctggaaa ggcaaattac catcatcaaa aagacgaata gtggcagttt attcatgaat
     1261 atagaccctt agagactata atataactca aattcataag gatgagtcaa gctcctgatt
     1321 ttagtaattt cctcttcttt catttgaata taattattaa taaagtctct gctgaacaca
     1381 tctccctgta acaaaaattc atgatctgcc cgcaaatggt ccatagccat ctctaatgaa
     1441 gagcaaacag tgggtacatc aacaagctct tcaggcggta aatcataaag atctttatcc
     1501 attggctgcc cagggtagat ttttttctga atgccatcta tgcctgccat catcattgct
     1561 gagaaagcaa gataaggatt agctgttgga tcagggaaac gtacttctat acgtcgtgcc
     1621 tttggattgc taacgtgtgg gatacggata gcggcggagc gatttcttgc tgagtaagcc
     1681 agtaatacag gcgcttcaaa cccgggaact aatctcttat agctattggt tgacggattg
     1741 gtaaaagcgt ttaaagctct ggcatgcttg attattccac ctatgtaata taaagctgtt
     1801 tcagaaagcc ccgaatactg atcaccggaa aacagattat acccatcttt ataaagtgat
     1861 tgatgacagt gcatcccgct tccattatct cctaccaaag gttttggcat aaaagtagcg
     1921 gttttcccat agttatgggc aacattatgt atcacgtatt tcagaatttg tagttcgtct
     1981 gcctttttgg tgagtgtatt aaaacgggta gctacttcac actggttagc tgtagctact
     2041 tcatgatgat gtgcttccac aaccattcct aaagattcca atgtgataca aattgctgaa
     2101 cgaatatcat gagatgaatc gactggagga acagggaaat aaccgccttt caacggaggt
     2161 ctatggccaa tatttccgcc ttccatttcc ttaccggagt tccaatgtgc ctcgtctgaa
     2221 tctattttat aaaatgaacc gctgatagta gtttcccatt gcacattgtc gaagagaaaa
     2281 aactcaggct cagggccaaa atttacacca tctgcaatcc ctgtagattg taaataattt
     2341 tctgcgcgtt gtgcgattga acgtgggcat ctgtcataac ccatcatagt ctgtggatca
     2401 actacattac atcgtataaa taaagtgttg tcctgaaaaa atggatccgg cttaattgaa
     2461 gttaaatctg gcactaaagc caaatctgat tgatgaattt tctgccaacc tttaaaagat
     2521 gagccatcga tcatttttcc attctcaaga aaatcatcat caactgctga aacaggtatg
     2581 gtaatgtgtt gctcttttcc acggatatct gtaaatctta aatccacaaa tttggcgtca
     2641 tgttctttga ttgcatcaag cactacattt tttgtcatct tttgtctcca ggatagtccg
     2701 cgtatagttt accttaagtg acttattaat cccaatagat tacactctat agttttaatt
     2761 ttaacaaaaa taatatgggc gcctaccaat atcaagcgct aaaagtgaat ggcagcatta
     2821 gcaaaggtgt aatagaagct gattctgaac gccatgcacg tcaattattg cgagaacaag
     2881 gactaatccc tactcaagtc caaacattaa cccagcaacg tgctgccagc agcaaaagta
     2941 aagtttctgc ggctgatttg gcattactca cgagacagct ggcaacactt ctggctgccg
     3001 gtattcctgt tgaagaatca ttgcgcgggg tcagcgaaca aacagaaaaa gacaaagtca
     3061 gagagcttat tatcggagtt cgctctaaag tattggaagg gtatggtctt gctcaggcaa
     3121 tggctcaata tcccaatgcc tttccagaac tataccgggc aacagttggc tcaggcgagc
     3181 agacagggcg tcttgatgtc gttttagaaa aattagctga ttatactgaa aaacaacaac
     3241 aaactcgaca gaaagtgcaa caagccttga tttacccatt gctcatgatc attgtttcta
     3301 ctgccattat cagtttttta cttacttttg tcgtccctaa aattattgat gtgtttaccg
     3361 aaagtggcca aacactacca ccaatgacga aattgcttat taacttgagc caatttatca
     3421 aatcttatgg tttgtatagt ctagtgacaa taattgtggc tctgattgga tttaaaaaaa
     3481 gcctcagtaa tataaaaatt aaaacagcat ggcatcaatt catgcttaaa ctacctatcg
     3541 tgtcttattt ggttaaaaca attaatgtcg cacgatatat tcacacgttt ggaattctat
     3601 ttgcagcagg agtcagtgta cttgaaacca tgcgtgtttc ttcaagtttg gtaaccaata
     3661 tcgtgatgag acaggctttt gatttcgcta ctctacgagt ccgtgaagga agtggaatca
     3721 gtgaagccct caaagaaaca aaattcatta gccctatggc tatccatctc atagccagtg
     3781 gtgagaaaag cggccaactt tcagacatga tggaacgctc agcgtctcat ttagataatg
     3841 aagtaaaccg actgattgaa acatccttaa ctttattaga acctatggtt attctattaa
     3901 tgggtgctgt tgttttgttt attgtacttg cgaccttatt acctattttt tcaatggaac
     3961 aattagttgc ctgattaagc agaggaaggg ttatccgcgc cctttaaaaa tttaagtcta
     4021 ttcataggca tcaatatttg tgttataatt taacatttag ttacaagagg tacacaaatg
     4081 aatcgacaaa aaggcttttc tttgatcgaa attatggttg ttgtcgtgat tttaggtata
     4141 ttggcatcta tagttgtccc caagatcatg gggcgtccgg atgaagcccg taaagtcaaa
     4201 gcgaaacaag atgttttagc cattcaaaat gcactcgatt tatacaaact tgataatggt
     4261 tcatacccta caactgatca aggtttaatg gctctggtag aaaaaccaac aagcaatcct
     4321 gttccaacga attggaaaca atatctgaaa tcattgccaa aagatccatg gggcagagaa
     4381 tatctttatt taaacccagg acaacatact gacgttgatg tctttactta tggagcagca
     4441 ggacaacctg gcggaacagg gattaatgcg gagattggta actgggatga ccactcataa
     4501 gggttttacc ctgatagaaa ttcttattgt catagtgatt ataggtataa ccttggggtt
     4561 tgccttaatc gcttttggtg atttcggaga aagcagacgt atacaatttt cagctgaaca
     4621 attggcaaat accctaagcc tggctcaaca acaagccatt ttagaaagca gtacccttgg
     4681 gttaaaaata gataatagca gttaccaaat tcttaagttt caggaccagg cgggatggaa
     4741 tcccatatcg aacaaaggaa tttttaaact ctactatttt cccaaaaacg ttgtgattag
     4801 ccttaaaaca aatctaaaac atagccgggg gaaccctgca atcataatag caccatctgg
     4861 tgacatgacc ccttttacta tagaatttgg cacagataag gaaaaatgga tagccaaact
     4921 tacaggcagc cataatggtg atttggattt taccatggca aaatctcaat gatgccgaaa
     4981 actaaactag tctccggatt tactttgata gaagtcttat tggctcttac tgtcattgca
     5041 attgctttaa cagcgctttt aaaagcaact gctcaaaata tagacaacac gcatagaatt
     5101 aaagaaaaaa caattagtca ttgggtagca atgcaaggga tagcgatgat ccaattaaat
     5161 ctgctgcgca cttctcaaag ccaagaatca acgcaagcaa ccaccatgct gggacaaaag
     5221 tggtactgga gagctaaaat tagcccgacc cctataaaac gaatgcaaca gataaccatt
     5281 tcagtcagtt ccaaacaagc aggtcccttt cgagaagaac tcattgcatt caggtacttg
     5341 ccatgattaa aaataaagga tttacactga ttgagatatt aattgctctt actgtttttg
     5401 ctatattagc aactattacc tcctcaacct tatactacgc attcaatact cgaacccgag
     5461 ttaacgcgca ggctgaacgc ttaaatgcac ttcagctggc aataagtatc attcaacaag
     5521 atacttccca aacagtggaa cgtgctataa gaggtaatga aatgcgcctg tttccaatat
     5581 ttgttggtca accccaatac cttgaactaa ccagggatgg agtagtaaac cccaacagta
     5641 ctgagaaacg cagcaccttg gaacgcgtcg cacttgtttg ccaggatagc aaattactgc
     5701 gccgcacatg gaatacttta gatcctattg acagaaatat ctataaagac aaagtacttc
     5761 tggataattt gtctgaatgt catttcaact atttaaatca aaatttacag cttctctccg
     5821 agtggcgaga acaggcagtc aatcaaaatc agcaaagaga acctcttccc aaagcaatcc
     5881 aaatgaatct cactttaaag gactggggag atatgaacat gctttttatc atacccggag
     5941 cactctatgt ttatgagtag cccaccttca aaatccattg ccagttctaa aatgcaagga
     6001 agcgctcttt taacggctct atttattatg acattggttg ctatagttgc cactgccatg
     6061 agcacacgat tacaacagga catttacaga acaagactag tgattgctca ggataaacta
     6121 tatcttgctt ctcaggcagt tactttctgg gcactcaatg aattacttga taagaacaac
     6181 cactttacaa aaaccaacca gttagggatg gtagcccaat accctaaaaa tatggaatcc
     6241 atatataatc aagttcaatt aagtggtgga atttttgatt tacaagcacg atttaacctc
     6301 aataacctga ttgagaaaaa atctattccc actttaatgc acctgataag ccacgcctac
     6361 tcaaaggcaa ccggccaaga acgtgctaat atagccttgg gagtaaagca ttggttgctt
     6421 gcttatgatc ttggccgagg agaagatatt tatacctctt attatctctc ccagaaacct
     6481 ccttactatc ccagccatca acttataaaa agtaaatctg aatttcgatt gataaaagat
     6541 gtaagtgcac ccgcttatat tgcccttgaa ccttttatca cagccttgcc tgaatcaacg
     6601 agcatcaaca ttaatactgc cccaaagcaa atattgatgt cattaggaga tggattaagt
     6661 gacgcccagg caaatgaatt aataactgct cgtggggaaa atggtatcac tgatctgaaa
     6721 gagatcaacg agttattaaa aaaattcaat attcccagtg accaaataac cgttgaaagt
     6781 caatattatc tcagcgttgc ctatgcaaag aatgatgaat ttagtttagt tgtgtattct
     6841 ttattaaaac gtagtcgtga cagaaagggt aagttattaa caagcgtcat tagagagagt
     6901 attaataatt tttgacttaa gctcaaatgt tccaaacaat atgaatacgc cagaatccaa
     6961 cttttagtta atgggttgtc atccgatttt tatttttacc aggaatgagt gcttttagtt
     7021 tctggaaaat gcaattcttg ctgagatttc atcccccact aatcgatata ttttaataca
     7081 atctgattgt ttactatact aatagatatc atcaaattca tttggatttc acgatgcact
     7141 tagttttatt ttctaactgt ttacgaggaa aaccatcaac attaatgctc gcttcgcttt
     7201 ttaacatacc cttttactaa ctacttgtta tgattaatat tattaaaaac agaaacaaga
     7261 aaaaccatac tgcttccact gagttgaaat caaaaattaa gaaggagcag gtcaaactgc
     7321 tttttgatca agttggtatg gctatatcag gtgaagcttt aacagtaact atactaccta
     7381 ttgcattatg gtctgttaca aatcatgagc tgcttattat ttggatgatt tttacttatg
     7441 ttttttcaga tctttataaa agcatgctgc tcttctatta caataaacaa ccaacattat
     7501 tttcaaccga aaaatggttg ttccttttta acttgggtgt tgtaagttct ggcttggcat
     7561 ggggatttgc cagttcaatt atgattccag cctcaagtac attgcatcaa atctttgtcg
     7621 tttttcttat tacaggagtt acagcagcag ccaattcgct ctattcacct gtgcgattat
     7681 cctatttttt atttctggtc actgcttttg ttcctttcac tatatggtta ttttcaaaag
     7741 gacaagttta tttattgttg gggttttgcg gcattattta tttggggatt atgttgttta
     7801 tttcatatta ctcaaacagg attttgatta ataccttaaa aatgcgcttt aaaatctcta
     7861 atttgaattc aaccaaagat attttagaaa aaaaagtagc ggacagaacc aaagaattgg
     7921 aaaaaatctt ggctttaacc aaatcaactt tagagtcaac agcggatggt attttagttg
     7981 ttgatctcaa aggtaatatt gaattctgca atcagcaatt tctcaagatg tggggaattg
     8041 ctccagggtt tattgacagt cataatgaca cagaaacaat tcaatatgta ttgaatcagc
     8101 ttaaaaatcc ggaagaattt ttaaaacaaa ttaaagaact atacaataat ccaaagcagg
     8161 aaagctttga tgaattgcat ttcaaagacg gtaaaatctt tgagagatac tcacaaccac
     8221 attggttaga caataaaatt atagggcgtg tttggagttt tagagatgag acattaagaa
     8281 ccagattagc ttatcaagcc aatcatgatt ctctaactgg tttacccaat cgtacagctc
     8341 tatacgatcg cctggatcac gcgattaatt actgtaaacg attaaacacc tcattatcgg
     8401 tattatttct ggatattgat aattttaagt taattaatga cagcctgggc catgatgccg
     8461 gtgatatatt attgtatgaa ttttccaggc gtcttaaagg atgcatacgt catagcgata
     8521 cagttgctcg atttggcggt gatgagtttg ttttgttatt gatgaccact gaacctaaag
     8581 atgttattct aatagcgcaa aacattttaa aagctgtagc gcaacctatc aaattgccta
     8641 cccaggaagt catagtgacg acaagtatag gaattagcct tttccctaaa gatggcattg
     8701 atgcaagcac cttactcaaa aattccgata ccgcaatgta cctggctaaa aaggaagggc
     8761 gcaataattt ccaattttat aataattcga tcaatcaaca atcgctcaaa cgccttgaga
     8821 tacaaacaca gatacacaat gcaattaaaa ataatgaatt ttttattctt taccagccca
     8881 tttataattt acgtagcggt gaattagtag gtgccgaagc cctgatacgt tgggggcatc
     8941 ctgcaatagg actcctctct ccggatgaat ttattcctat tgctgaagaa accgggttga
     9001 ttaaccaagt tggcgagtgg gtgttaagaa atgcctgtgt tcaaaataaa acctggcaac
     9061 ttatggggtt accgcatatt agtatttccg ttaatgtctc atggagacag ttaaaaaata
     9121 gcaattttat cgagattgca gaatctgtat taaaagaatc cagactagat cctcagtatt
     9181 tggaaattga attcaccgaa agtactatga tacaaaaatc aacgcccatt gattcaacgt
     9241 taataaaaat ttcccagttg ggcattaaaa tggcaattga tgactttggt accggttact
     9301 caaatttaag ttatttaaag actttcccct tcgataaact taaaattgat cgttcattta
     9361 ttcaaaactg caccactaac ccaaatgatg cctccatagt tgaagcaatt attgccatgg
     9421 cccatagcct ggaactcaaa gtattggcag aaggagttga cacgattgat aaagcgtttt
     9481 ttatgcatca acatggctgt gatgaagtac aaggtttcct ttatggccta cctgttaaag
     9541 ctgataagtt tgtgaaatta atgcaaaaaa ctaaaatccg ccattcaaaa tttattaata
     9601 aaacataagg ttgttgtttc ttttagtact ataaagaaaa tactacagac tactcatcaa
     9661 ttgaactagc tcatttaaac cagtatttta aacacacaac aaattatcaa gttacaacta
     9721 taatcttctg gattcagttt ttaactttag tcctcataat tctctttgct ttctaatggg
     9781 cccaaatcct tgatcatttt ctctgcttcc aatttttcag gttcggtcaa cttggcttcc
     9841 aaagatttaa gttgctttgc cgcttcctca tttttatttt cagcagcaat ttttaaccag
     9901 gcgtaagctt taaccaagct cttgttgact cctaatcctg ctaaatacat gtaccccaac
     9961 ttggcttgtc caataggatt tccctgatgt gctgacttac caaaccagta agctgcctgt
    10021 tggtaatctt tatcaacacc tgtaccagtc aataacaatt gtcctaattg tgcctgtgct
    10081 tcaggttgcc ccttttctgc tgcagattga taccaataag ctgctttcac aggatcagca
    10141 tctacaccat accctttaag atagtagtaa gctaaatagg tttgtgcgtt gacatgtcca
    10201 tgattggctg cttgtgaaaa ccagtaaaaa gcggctttat catccgcacc aatcccacct
    10261 tcctggcctg tatacaatag acctagactg tattcgccct tttcatcccc ctgctctgcc
    10321 gctttttgat accattcaaa tgcttttttt acatcttttg gagttccttt acccatcatg
    10381 tattgataac ccaaattcac ttgtgccttg ctatagcctt gttctgccgc ctttttaaac
    10441 cagttgaatg ctttatcatc actggcagct acgccatccc ctgtggcata cattaatccg
    10501 atatttcttt gtgctatcgg atttccttgc tctgctgcct tcatatacca tttgaaggcc
    10561 tcagtaaaat cctgagatac ccccttacct gtatcgtaca taaatcccaa acttaattga
    10621 gccaatgcat tatttttatc agctgccttt tgataccaat ttctggcttc ttcgtaatta
    10681 gttgtcacac catatccgta ttgatacatg cgccccaata aatacatggc ttcctcatta
    10741 ccttctttgg ctgcctgcat taaatgtgga taggctgtgg tgtagtcgcc attttcaaat
    10801 gctgcaaaac caactaactc atcggccaaa acaacggtgt taatcgccaa taatagagct
    10861 aacaaaaaac ttctcatact tgctccattt tattcccttt taatttaagc gtagaataaa
    10921 gaagcaacaa agcaagtaat tgatcaattt aagatataaa acaaac
//
LOCUS       DACVWI010000101        10888 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.101, whole genome shotgun sequence.
ACCESSION   DACVWI010000101 DACVWI010000000
VERSION     DACVWI010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10888
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.101"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            109..1227
                     /locus_tag="JBH85_09490"
     CDS             109..1227
                     /locus_tag="JBH85_09490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1654 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946434.1"
                     /translation="MMDEVKRIHARQKVASAKELEKRYCIKEAMTEYLRAIDLFLQIS
                     NKTPEDINAIVNVHYDLANLYFNRRDYLSAGRHYEAAINHLTETPLKDDSYRLLTELY
                     IDLSDACYELMNQSAGDEAMANALKAFGLIQNKTFEEQQIGDPVANFKQFHIFYEKKL
                     STKSYLNSAKFMNHEYLLGEGQVARQKEQALFEQFENISISEIQQIDRSLENMLSQLS
                     LAAEPPTPNSVSGVDRVIFNPIFVNVTPSDSSYRGMAMQVLNLAKSYIQNQKISDAIA
                     TYQQAIKILNTIKSPIESDLQIVQELTQHIRYLQNKPSSTKDQFSSCYKEAQTPVIAT
                     ASEVGFFNYRPQEAFQVSDSFHSPNEMDVEYCDVDLRP"
     gene            1642..3057
                     /locus_tag="JBH85_09495"
     CDS             1642..3057
                     /locus_tag="JBH85_09495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HAU0946435.1"
                     /translation="MNKGMNAFVFLIAVIAGFGGFLFGFDSSVIADVKDQVISQLALT
                     DWQWAQVVSSSLLGCILGIPISGLVADKLSRRSLLKVVALGFILGSSLCALAPGFVSI
                     LLGRFIIGICIGIASYIAPLFIAEIAPPHQRGTLVLINGLTITFGQAIAYLIGYFLHD
                     YSLMSWRYLFWIGSLPALVLFSGMYFVPHSPRWIMIKYGADATLKTLKQIRPVGYNIQ
                     QELTEISNNLVNPAPAYIQMFKKPIVFVLLLGVGLGLFQQFSGINALMYYGPVVFESF
                     GFSPVKNAILATFFLGLVNFIFTVVTLFYVDKLGRRFLLISGTLIASISLYFVSLLSC
                     HSLFVNKFWILGGLSFYVMGYCISLGSLFWVLISEIYPLSVRGLAMSIATMFQWGANF
                     VVSLLFLPIYQFSGQTVTFAMFATFCLLACWFIYYFVPETTSVSLEKLEENLSSGKKV
                     RDIGQPVSKNIKIAKFNLIMD"
     gene            3060..4064
                     /gene="iolG"
                     /locus_tag="JBH85_09500"
     CDS             3060..4064
                     /gene="iolG"
                     /locus_tag="JBH85_09500"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HAU0946436.1"
                     /translation="MKKKICRIGIVGAGRIGRLHAENILFHLPQFELVAIADPQIDRN
                     WAEKLGIAIASTQSEDVLCHPDLDAILIASPSHLHLEQIITASIHEKAIFCEKPIGLN
                     EEEIEKTLNIIKNNNTLLQLGFNRRFDPGFANIQKRVQFGEIGTPHILRITSRDPACP
                     SKEYCATSGGIFMDMSIHDFDMARFLMQSEVVEVYATGAVLINPDFEQFDDVDTAIIQ
                     LRFANGAFGVIDNSRQAIYGYDQRIEVFGSGGMLLAENQFEHTVSRYSANGTDGAKPQ
                     YFFLERYHQAYLAELNAFYSAWNDNQTSPVSGLDGLQALRIAKAAKQSLETHLPVVLS
                     "
     gene            4072..5958
                     /gene="iolC"
                     /locus_tag="JBH85_09505"
     CDS             4072..5958
                     /gene="iolC"
                     /locus_tag="JBH85_09505"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HAU0946437.1"
                     /translation="MKQFPGFYFDKNRAIDLICMGRVAVDLYAEQIGLDLKDVASFKK
                     YLGGCAGNIAVGAARLGLKSQMFSCVGSDELGKFLKEELEREGVNIELLLETDNHLTG
                     LVLLGIKPPSNFPLLFYRNDCADMQIKSDQISFTDLKNAKSLLITGTGLSTESMKNTT
                     LEVVHLARKAETTIVFDLDYRPVLWRLTVIGNGESRYCQNEYVTQVYQQILPLCDLIV
                     GTEEEICIAGGSNDIEVSLINIRQRTDAPIVVKLGEKGARVHFGADKGLLQAKSFPVE
                     VLNVLGAGDGFMSGLLAGLLQGKSWEQAVTYANACGALVVTRHGCAPAIPYKEELNYF
                     IQEYDHEPEIWNSSQLTQLHEKLSKNRKTQLLIKNPCGFADGLNSIVTMQDSPTAMSF
                     SSLKLNKGQSHQFNSSYEFAALLMTGKVVFQYGCYSQEVERTDYFSQSPYVLHCSKNE
                     VSSVIALTDCEILLMETENENLFSPILFDASNMLELDNRGEGVLENTSYRLVRTVFDK
                     RNRPESNLVVGEIITFQGRWSSYPSHYHQQPEIYHYRFSEPQGYAFGENGKEVMRIEH
                     YDTYQIANNQEHAHCTAPGYALYTLWFIRHLNNNAYTLPTFTKDHEWTRTSRANLRTW
                     QHKQ"
     gene            5997..7868
                     /gene="iolD"
                     /locus_tag="JBH85_09510"
     CDS             5997..7868
                     /gene="iolD"
                     /locus_tag="JBH85_09510"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HAU0946438.1"
                     /translation="MKIKLTMAQALLRFLANQYVVLDNNEYRFINGVFGIFGHGNVTG
                     LGEALEYDAQGLIYYQGHNEQGMAHAATAYAKQKNRLGIMACTSSIGPGATNMITAAA
                     TATTNRIPLLLLPGDVFSCRQPDPVLQQLEVPYDYTISVNDCFKPVSKFWDRITRPEQ
                     LMTACMHAMRVLTDPVETGTVTLCLPQDVQSEAYEYEESFFKKRLWRIERERISDAML
                     TEAIRHIRTAKQPLIIAGGGVHYSLATETLSEFALKHRIPVAETQAGKSSLTAKHPMN
                     VGGIGVTGSEIANSLAAQADVILVIGSRLQDFTTASKWAFKNQDCQIIHLNVSRLDAM
                     KMNGVMLKGDAKAGLEQLGKELADYQTSLSYQQLIRHYQNEWAQELDKLTQSYSTEQA
                     GLHQTTVLGLLNQYVTEEDVIISAAGSLPGDLHRIWQSKKAKDYHLEYAYSCMGYEVA
                     AGLGVRIAKENQEGEVYVLVGDGSFVMMHSELLTAIQERKKITILIFDNHGFQCIRNL
                     QEGNGSLGFGNEFRYREPTTNALNGDYLPIDFCKYAEGLGAATYFVKSYEQFRTTLDS
                     AKKQENSTVIVLPVLPKTMSQGYKTWWRVGVAEVSQSESVSKAYQMMREQIETVRQY"
     gene            7865..8767
                     /gene="iolE"
                     /locus_tag="JBH85_09515"
     CDS             7865..8767
                     /gene="iolE"
                     /locus_tag="JBH85_09515"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HAU0946439.1"
                     /translation="MKMEVKMSIQLGIAPINWCNDDDPNLGKDISFEQCINEMAMAGY
                     SGTELGNKYPRDVRTLKAALEQRGLQLSSSWFSTYFTEANAFEKTVSRFLEHLSFMRA
                     LGASYINVCECGHAIQGTDLPILSAHIPQFTQEQWSLLIQGLHTLGRIAYDFNMKIVY
                     HYHAGTGVFWEKDIDFLMTNTSPKLVSLLLDTGHAAFSGIDPVNLIDKYGDRILYVHL
                     KDIRPEVLRRVEMERLSFMDAVRRGVFTVPGDGAIDFIPIWAGLQKHRYNGWMIVEAE
                     QDPEKAHPLEYAKKAYDYLHSFIH"
     gene            8889..9146
                     /locus_tag="JBH85_09520"
     CDS             8889..9146
                     /locus_tag="JBH85_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2282 domain-containing protein"
                     /protein_id="HAU0946440.1"
                     /translation="MSMKDKLVQSAISAFLVLIASNTAIAEDLSKEKCYGVVKKGMND
                     CSTATSDCAGSSTKDSQKDAFILLPKGICEKLVGGSLDMGK"
     gene            9168..9767
                     /locus_tag="JBH85_09525"
     CDS             9168..9767
                     /locus_tag="JBH85_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HAU0946441.1"
                     /translation="MNMKRIYRHFIAPILAVFVLSSYVYAEPQTLTLDNQHTYVLWKI
                     KHLGFSTQAGKWYASGQLVLDKDNPQQSKVNVTIKVDDIVTGIPELDKHLKGKLFFDT
                     KQFPTATFVSNRVEVMGKNKAKVYGMLTLHGVTKPIILNVILNKAGINLLNDRETAGF
                     SATTSLKRSDYGIKALIPEVGDDVEIEIEAEAYLDKKYG"
     gene            9771..10301
                     /locus_tag="JBH85_09530"
     CDS             9771..10301
                     /locus_tag="JBH85_09530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HAU0946442.1"
                     /translation="MQLKNTSTSFGLVAIFFHWIMAALIIGLLGVGLYMVRIPISLEK
                     LKLYGWHKEYGFLVLFLAFFRLIWRLTNQLPELAIPLLEKIAARSMHWAFYFFMFAMP
                     ISGWLITSAAGLPASFFGLFVLPDLVAPDENRRILFQLIHEWLGYALIMAIILHAAAA
                     LKHHFINKDDILRRML"
     gene            10301..10876
                     /locus_tag="JBH85_09535"
     CDS             10301..10876
                     /locus_tag="JBH85_09535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HAU0946443.1"
                     /translation="MNVYIKSSLWVLIFFVNTLIYASKLPEWEIVPAQSEITFTGTQN
                     GAPVTGRFKKFTGQIFADPSNYKTGSIDITIDMNSIAAPFEDIVTTLASPDWFNVKTF
                     PNAEFKASKFNQLDDKTYEAEGILTIRDKSAPVTLKFVVEQISNDQALVEGSSTIKRS
                     TFGVGQGEWASTDEIQDAVIVRFKISATRKK"
BASE COUNT         3338 a         1777 c         2344 g         3429 t
ORIGIN      
        1 tttttaattt cagacaatta agaaaattcc tatttgtttt aagggggttg gattatttta
       61 caataagttg tctttatata tgggtctgaa ttcgcattaa aggagtcaat gatggatgaa
      121 gtaaagagaa tacatgccag acagaaagtc gcctctgcca aagagcttga aaagagatat
      181 tgcataaaag aagcaatgac cgagtatcta agagcaattg atttattttt acaaatttcc
      241 aataaaactc ctgaggatat taatgcaata gttaatgtac attatgatct ggcgaacctg
      301 tattttaata gaagagatta tttaagcgcc ggtagacatt atgaagcggc gataaatcac
      361 ctcacagaaa ccccactcaa agatgactct taccgacttc taacagagtt atatattgat
      421 ttatctgatg cgtgttatga gctgatgaat caatctgctg gggatgaggc aatggctaat
      481 gcactaaaag catttggatt gattcaaaat aaaacatttg aagaacaaca aattggggat
      541 ccagttgcta atttcaaaca atttcatatt ttttatgaaa aaaaactatc aacaaagtct
      601 tatttaaact ccgcaaaatt tatgaatcat gaatatctgc tcggagaggg gcaagttgca
      661 aggcagaagg agcaagcact ttttgagcag tttgaaaata tatcgattag tgaaatacaa
      721 caaattgatc gtagcttaga aaatatgtta tcgcaattgt ctttggcagc agaaccccca
      781 acccctaatt cagtctctgg agttgatcga gttattttta atccgatttt tgtaaatgta
      841 acgcctagtg atagctctta tcgcggcatg gcaatgcaag ttctaaattt agccaaatct
      901 tatatacaaa atcaaaagat ttcagatgca atagctacct atcaacaagc cattaaaatc
      961 ctgaatacaa ttaaatcacc tatagaaagt gatctgcaaa ttgttcagga gctaacgcaa
     1021 catataagat acttacaaaa taaacctagc tctacaaaag atcaattttc atcctgttat
     1081 aaagaggctc aaactcctgt aattgccact gcttcagagg tgggattttt taattacagg
     1141 ccacaagagg cttttcaggt atcggattca tttcatagcc ctaatgaaat ggatgtggaa
     1201 tactgtgatg tcgatttgcg cccataagta cgttgctagt tgagtgacga taattatttt
     1261 tgtgttcaaa cggcagatag gtaggatttt agggtccttg ccttttgcag caatattgca
     1321 aaaaactacc aaatttagaa accactgcat ctcaagtata attaattctt gtaacttgtg
     1381 attgcagtgc agcaagaatt tgcgtggcat agggtgttgc gccctttgtt ccatgaatta
     1441 actacttatg gtgatttaaa ttgggacgtt ggctaagcgt gtcctcttca cgccaaaaag
     1501 tgtttgttta atcagcaaac ctccattatc ggggtaaagt attattttat cttcaataat
     1561 ttacactttg atatttttct tgcaacctgg ccgtgataac atcatgcacg aacagaattt
     1621 tcattaggga cagatagtta catgaacaag ggaatgaacg catttgtatt cctgatcgcg
     1681 gtaattgccg gatttggcgg ttttttattc ggatttgatt ccagcgtcat agctgatgtg
     1741 aaagatcagg ttatctccca attggcatta acagactggc aatgggcgca agttgtcagc
     1801 agtagtttat tgggatgtat attgggaata cccataagtg gtcttgtcgc agataagtta
     1861 agcagacgat ccttattaaa agttgtagct ttaggcttta tactggggag tagtttgtgt
     1921 gctttggctc ccggcttcgt ttcgatatta ctcggtcgat ttattatcgg catttgcata
     1981 ggtattgcct cctatattgc tcctttattc attgcagaaa tcgcgccgcc tcatcagagg
     2041 ggaactttag tattgattaa tggactaacc atcacgtttg gtcaggctat cgcctattta
     2101 attggctatt ttctccatga ctattcttta atgagttgga gatatttatt ttggatagga
     2161 agtctacctg ctctcgtttt attttcagga atgtattttg tccctcattc accccgctgg
     2221 ataatgatta aatatggagc tgatgctact ttaaagacct taaagcaaat taggccagtt
     2281 gggtataata ttcagcagga attgactgaa attagtaata atttagttaa tcctgcacca
     2341 gcctatatcc agatgtttaa aaaaccaatt gtttttgttc tcttattagg agttggttta
     2401 ggactattcc agcaattttc cgggatcaat gctttgatgt attatggacc tgttgtcttt
     2461 gaatcatttg ggttttctcc agttaaaaat gcaattctcg ctaccttttt tttgggtctg
     2521 gtcaatttta tttttacagt ggttaccctt ttttatgttg ataaattagg cagaaggttt
     2581 ttgttaatca gtggtacttt gatcgcatca attagcttat attttgttag cttactatcg
     2641 tgccactctt tatttgtcaa taaattctgg attttaggtg gtttatcatt ttatgtgatg
     2701 gggtattgta ttagcctggg gtctctgttc tgggttttaa tatccgaaat atacccctta
     2761 tcagtgcgtg gtttggcaat gagcattgct actatgtttc aatggggcgc taattttgtt
     2821 gtatcacttt tgtttcttcc catttatcaa ttctcaggtc aaacagttac ctttgctatg
     2881 ttcgctacct tttgcttgtt ggcatgctgg tttatttatt attttgtccc ggaaactaca
     2941 tcagtatcgt tggaaaaact ggaagaaaat ttaagctctg gaaaaaaagt aagagatata
     3001 ggtcaaccag tatcgaaaaa tataaaaata gcaaaattta atttaattat ggattaatca
     3061 tgaaaaagaa aatatgtcga attgggatag taggtgcggg aagaattggt agactgcacg
     3121 cagaaaatat tctatttcat ttaccgcaat ttgaattagt ggccatagca gatccccaga
     3181 tcgataggaa ttgggcagaa aaattaggga ttgcaatcgc gtctactcaa tcagaagatg
     3241 tgctatgcca ccctgacttg gatgccatct tgatcgcgtc accatctcat ttacatctcg
     3301 aacaaattat tacagcgagt attcatgaga aagcgatttt ttgtgaaaaa ccaattggtt
     3361 tgaatgaaga agagatagag aaaacattaa acataatcaa aaacaataat actttattgc
     3421 aacttggatt caatcgtcga tttgatccag gttttgccaa cattcagaaa agagtgcagt
     3481 ttggtgaaat tggcactcct catattcttc gaattacttc tcgtgatccg gcttgtccat
     3541 ccaaagaata ttgcgcgaca tctggtggaa tatttatgga catgtctatt catgattttg
     3601 atatggcacg ttttttaatg caatccgagg ttgtggaggt ttatgcaaca ggggctgttc
     3661 taattaatcc tgattttgag cagtttgatg atgtagatac agcaatcatt caactacggt
     3721 tcgctaatgg cgcatttggt gtcatagata acagccgtca agcaatctat gggtatgatc
     3781 aaaggataga agtattcggt tcaggtggta tgttattggc tgaaaatcag tttgagcata
     3841 cggtatctcg atactcggct aatggaacgg atggcgcaaa acctcaatat tttttccttg
     3901 agcgttatca tcaagcttat ctggcagaac tgaatgcgtt ttatagtgcc tggaatgata
     3961 atcagacaag tcccgtttca ggattggatg gactacaagc cttgcgcatc gcaaaagcag
     4021 cgaaacaatc tttagaaacg catctgccag tagtattgag ttgaggccgc tatgaaacag
     4081 tttcccggat tttattttga taagaataga gcaatcgatt tgatttgtat gggacgcgta
     4141 gcagttgatc tctacgcgga gcaaatagga ttggatttaa aggatgttgc aagctttaaa
     4201 aaatatttgg gtggttgtgc aggaaatatt gccgttggag ctgcccgatt aggattaaaa
     4261 agccagatgt tttcctgtgt tggctcagat gagttaggta agtttctgaa agaagaactg
     4321 gaacgtgagg gagttaatat tgagttatta ttggaaacag ataatcattt aactggcctt
     4381 gtacttttgg gtattaagcc tccctccaat ttccctctgc ttttttatcg taatgattgc
     4441 gcagatatgc agattaaatc agatcaaatt agttttactg atttaaaaaa tgcaaagtca
     4501 ttattgataa cgggaacagg tttatccaca gaatcaatga aaaatactac cctggaagta
     4561 gttcatttag cccgaaaagc agaaacgaca atagtttttg atctcgatta tagacctgtt
     4621 ctttggcggt taactgtgat tggtaatggg gaaagtcgtt attgccagaa tgaatatgta
     4681 actcaagtgt atcaacaaat tttgccttta tgcgatttga ttgttgggac tgaagaggaa
     4741 atatgtattg caggcggttc gaatgatatt gaagtttcat taatcaatat caggcagcga
     4801 accgatgcgc caatagttgt taaattagga gagaagggtg ctcgtgttca ttttggagca
     4861 gacaaaggtc tattacaggc aaaatctttt cctgttgaag tattgaatgt tttgggagca
     4921 ggtgatggtt ttatgtccgg gcttttagct ggtttgctgc aaggaaaatc atgggagcaa
     4981 gcagtaacct atgctaatgc ttgtggcgcc ttggtcgtga ctcgtcatgg ttgcgctcct
     5041 gcaattccat acaaggaaga attgaactat tttattcaag aatatgatca tgagcctgaa
     5101 atatggaaca gctcccagtt aacacaattg catgagaaat taagtaaaaa tcgaaagaca
     5161 cagttgctta ttaaaaatcc atgtggattt gccgatggtt taaattcgat tgtaacgatg
     5221 caagactcac ctacagcaat gagttttagt tcccttaaat taaataaggg gcaaagccac
     5281 caatttaact cgagttatga atttgctgcc ctcttaatga caggaaaagt tgttttccag
     5341 tatggctgtt atagccagga ggttgaacgt acagattatt tttctcaatc accctatgtc
     5401 ttgcactgct caaagaatga agtaagttca gtaatcgctc tgactgattg tgaaatttta
     5461 ttaatggaaa cggaaaacga aaatttattt tctccgattt tatttgatgc atctaatatg
     5521 cttgagttag acaatagggg agaaggagtt cttgaaaata cttcatatcg acttgtcaga
     5581 acggtatttg ataaacgaaa cagacccgaa tctaatttgg tagttgggga aattattacg
     5641 tttcaagggc gttggtcaag ttatccttca cattatcatc aacaacctga aatttaccac
     5701 tacaggtttt cagagcctca aggctatgct tttggcgaaa atggtaaaga ggtgatgcga
     5761 attgaacact atgataccta ccagattgcc aataatcagg aacatgctca ttgtacagcg
     5821 cccggttatg cactttatac actgtggttt atccggcatt taaataataa cgcatatacc
     5881 ttgcctacct tcacaaaaga ccatgaatgg acaaggacaa gcagggcaaa tttaagaaca
     5941 tggcaacata aacagtagta atccttatct gcagtatgat tttgagagtc aaataaatga
     6001 agattaaatt aactatggct caggccctat taagattttt agctaatcag tatgtcgttc
     6061 tggataataa tgaataccgt ttcatcaatg gtgtatttgg aatatttggc catggtaatg
     6121 taaccggatt aggtgaggca ttggaatacg atgctcaggg tttaatttat tatcagggac
     6181 ataatgaaca aggaatggct cacgcagcaa ccgcctatgc caaacaaaaa aatcggctag
     6241 ggataatggc ttgtacttca tcaattggtc ctggcgctac taatatgatt actgcagcgg
     6301 cgacagcgac aaccaataga attccattac tgttgttgcc aggtgatgta ttcagttgca
     6361 ggcaaccaga tccggttctc caacaattgg aggtgccata tgactacacc atatctgtta
     6421 atgattgctt taaaccagta agtaagtttt gggacaggat aaccagacct gaacagttaa
     6481 tgacagcgtg tatgcatgct atgagggtat taaccgatcc agttgaaaca ggtactgtta
     6541 ctttatgttt gcctcaagac gttcagtctg aagcttatga atatgaggaa tcttttttta
     6601 aaaagcgctt atggcgtatt gagagagaga ggataagtga tgcaatgttg acagaggcca
     6661 taaggcatat cagaacggct aagcaaccat taatcattgc aggtggtggt gtacattatt
     6721 cactggctac ggagacttta tcagagtttg cattaaaaca tcgcattcct gttgctgaaa
     6781 cccaagcagg aaaaagtagc ctgacagcga aacaccccat gaacgttggt ggaataggtg
     6841 ttactggatc tgaaatagcg aattctctgg cagctcaggc tgatgttatt ttggttatcg
     6901 ggtctcgatt acaggatttt acgacagctt ccaaatgggc ttttaaaaac caggactgcc
     6961 aaatcattca tcttaatgta tcacgtcttg atgccatgaa aatgaatgga gttatgttaa
     7021 aaggagatgc taaagctggt ttggagcaat tggggaaaga gctggcagat tatcaaacct
     7081 ctctctctta tcagcagtta atacgtcatt atcaaaatga atgggctcaa gagttagata
     7141 aattgactca gtcttattct acagagcagg ctgggttaca ccaaactact gttttgggac
     7201 tgctcaatca gtatgttact gaagaggatg tgataattag tgcagcgggg agtttgccag
     7261 gtgatttgca tcgaatttgg caatccaaaa aggcaaagga ttatcatttg gagtacgctt
     7321 attcctgtat gggatatgag gttgcagcgg gtctaggagt acgtattgca aaagaaaatc
     7381 aggaaggaga ggtctatgtt ttagttggag atggcagttt tgtcatgatg cattcagagc
     7441 ttttaactgc catccaggaa cgcaagaaaa ttacaattct catttttgat aaccatggat
     7501 ttcagtgcat tagaaattta caggaaggga atggtagtct gggttttggt aatgaatttc
     7561 gttataggga gccaactact aatgctttaa atggcgatta tttacccata gatttttgta
     7621 agtacgcaga gggattgggg gcagctactt attttgttaa atcctatgag caattccgga
     7681 ctactttaga ctcagcaaaa aaacaggaaa atagtacggt tattgttctt cctgtattac
     7741 caaagaccat gagtcaagga tataagactt ggtggcgggt tggagttgct gaggtatctc
     7801 aatcggaatc agtgagtaaa gcttaccaaa tgatgcgaga gcaaattgaa acagttagac
     7861 aatattgaag atggaagtga agatgagtat tcaacttggt atcgcaccaa ttaattggtg
     7921 caatgatgat gatccgaatt taggtaaaga cattagtttt gagcaatgta ttaacgaaat
     7981 ggctatggca ggttattctg gcactgagct ggggaataaa tacccacgag atgtaagaac
     8041 gttaaaggct gctttggaac aacgaggttt acaattatcc agttcatggt ttagcactta
     8101 ttttactgag gccaatgctt ttgaaaaaac cgtatcaaga tttcttgaac acttaagctt
     8161 tatgcgcgca ttaggtgcat cgtatattaa tgtttgtgaa tgcggtcatg ctattcaagg
     8221 cactgattta ccgatattaa gtgctcatat ccctcaattt actcaagagc aatggagttt
     8281 attgattcaa gggctacata ccttaggccg aattgcttac gacttcaata tgaagatcgt
     8341 ttatcattac catgcaggga ctggggtgtt ttgggagaaa gacattgatt ttttaatgac
     8401 caataccagt ccaaagttgg tttctctatt acttgataca ggacatgctg ccttttcagg
     8461 aatagatccg gttaatttaa tagataagta cggtgatcgt attttgtatg ttcatctgaa
     8521 agacattcgc cctgaggtct tgagacgagt tgaaatggag agactcagct ttatggatgc
     8581 agtaagaaga ggggtattta ctgtgcctgg tgatggagca attgatttca tacctatatg
     8641 ggcagggctg caaaaacatc gctataatgg atggatgata gtggaggcgg agcaggatcc
     8701 ggaaaaagca catcctttgg aatacgccaa aaaagcatat gattatttgc attcatttat
     8761 tcattaaaga aaggctgatg attgaagatt taataaaatt tactttatta aaaataccag
     8821 ggaagcttaa gagttatcta tttataggct gagatctggt taagttcact ataataagga
     8881 gattatccat gtcaatgaag gataaattgg tacaatctgc cataagtgct tttttagttc
     8941 tcattgcatc aaacacagca atagcagagg atttgagtaa ggagaaatgt tatggtgtgg
     9001 ttaaaaaagg gatgaatgat tgttcaacag caacttcaga ttgtgctggg tcttcaacca
     9061 aggatagcca aaaggatgct tttattttat tacccaaagg gatttgcgaa aaacttgttg
     9121 gtggatcatt ggatatgggt aaataaaaca ttaatttaat ttgggagttg aatatgaaac
     9181 ggatttacag gcattttatt gctccaatat tggcagtctt tgtattgtcg tcttatgtct
     9241 acgcagaacc acaaaccttg accttagata atcagcatac ttatgtgtta tggaagatca
     9301 agcatttagg cttctcaact caagctggaa aatggtatgc aagcggtcaa cttgttcttg
     9361 ataaggataa cccgcagcag agtaaagtga atgttactat caaggtcgat gatatcgtca
     9421 caggtatacc cgagttggat aaacatttga aaggtaaatt attttttgat accaagcagt
     9481 ttccaacagc aacttttgtt agtaacagag tggaagtaat gggaaagaat aaagcaaaag
     9541 tatatggaat gcttactttg catggcgtca caaaacccat catattgaac gtgatattaa
     9601 ataaagcagg aattaattta ttaaatgaca gagaaacagc tgggtttagt gctaccactt
     9661 cattaaagcg ttctgattat ggaataaaag ctttaatacc agaagtagga gatgatgttg
     9721 aaatagaaat agaagcagaa gcctatcttg ataagaaata tggataatct atgcaattaa
     9781 aaaatacttc aaccagcttt ggtctggttg cgattttttt ccattggatt atggccgctt
     9841 taattattgg gctattggga gtgggtttat acatggtcag gatccctatt agtcttgaga
     9901 aattaaaatt atatggttgg cataaggagt acggatttct ggtattgttt ttggcttttt
     9961 tcagattgat ttggcgtttg actaatcaat taccggaatt agctattccc ctgttagaga
    10021 aaattgcagc tcgcagcatg cactgggctt tttatttttt catgtttgct atgcccatca
    10081 gtggatggct aattacctcg gctgcaggat tgcctgcttc tttttttggt ttatttgttt
    10141 tacctgacct tgttgcgccc gatgagaata gaagaatttt gttccaattg attcatgaat
    10201 ggttgggtta tgcattaatt atggccataa tcctgcatgc agcggcggca ttaaaacatc
    10261 attttattaa taaggatgat atattacgga gaatgttata gtgaatgtct atattaaatc
    10321 ttccctttgg gtattgatat tttttgtgaa tacattgatt tacgccagta aactccctga
    10381 atgggaaatc gtgccagcac aaagtgagat tacttttact ggtactcaaa atggtgcccc
    10441 ggttacaggg cgatttaaga aatttactgg tcaaattttt gctgatcctt caaactacaa
    10501 gacagggtca attgatatca ctattgatat gaattcgatt gcagcacctt ttgaggacat
    10561 cgtaacgaca ttggcctccc ctgactggtt caacgtcaag acatttccta atgcagaatt
    10621 taaagcttcg aaatttaatc aattggatga taaaacctat gaagcagaag ggattctaac
    10681 tataagagat aaatcagctc cggttactct gaagtttgtt gtggagcaaa tttctaacga
    10741 tcaggcttta gttgaaggta gctcaacaat caaacgcagt acatttgggg taggacaagg
    10801 tgaatgggct agtactgatg aaatacagga tgcagtaatt gttcgcttta aaataagcgc
    10861 tacacggaaa aaataattta aaggttaa
//
LOCUS       DACVWI010000102        10834 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.102, whole genome shotgun sequence.
ACCESSION   DACVWI010000102 DACVWI010000000
VERSION     DACVWI010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10834
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.102"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            312..1604
                     /locus_tag="JBH85_09540"
     CDS             312..1604
                     /locus_tag="JBH85_09540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006869506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HAU0946444.1"
                     /translation="MDNIFTDALARLDVAYQYAEIDPEAIERLKHPQAIIQMSLPLRK
                     DDGSLAMYSAYRVHHNNTRGPTKGGIRFHPLVTLEEIKALSFWMTIKCAVIGIPFGGA
                     KGGIVVDPKQLSRLELERLSRTYLEHFSSFIGPNKDIMAPDVYTNAMIMGWMMDEYSK
                     LKQEYSPAVITGKPIALSGSYGREDATGRGAFYCINELAKKKNWKPQNIRVAIQGFGN
                     AGQHIALCLYESGYKIVAVSDSQGGIYRAKGLDIPTLIHKKNSSKNIQAVYCTRSVCE
                     CELVEANKISNEELLELDVDLLIPAALENQITKDNAAKIKSPVIVEIANGPTMLDAEP
                     ILKNKNILVVPDVLANAGGVAVSYFEWVQNKTGYYWSGEQVQQRLHDIMVPEFLKVYQ
                     IMEKNKIDMRTAAYIHALNRYGEAVVAQGTQQHYFSTT"
     gene            complement(2077..2496)
                     /locus_tag="JBH85_09545"
     CDS             complement(2077..2496)
                     /locus_tag="JBH85_09545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946445.1"
                     /translation="MKIRLFLIPAILSFGLISSLAQAADTENKQMTATFKTQDGKTIQ
                     CLMAPEGSKDMKTGDMMEMMSMHSMQGSHMKGCHMQGNQMKGCPMKAMFKTQDGKTIE
                     CLVTPEVGKEMKAGEKMEMMGMGMQNMEGSGMEGNHQ"
     gene            2679..3560
                     /locus_tag="JBH85_09550"
     CDS             2679..3560
                     /locus_tag="JBH85_09550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019350038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAU0946446.1"
                     /translation="MVFPVVMIVLGIVLLISGAYLINKLLQKTNHYRRQWFSYLAFIA
                     VFILSYSASIFYGLLVDPHCLNNFYASVLLLGATYIYSSCRLMTNTIQKMELMDDFKN
                     RYEVLRHHATYDSLTGCNNREYLFEMMNTRFQQVKMNEGSVIVLFIDMDRFKTVNDRY
                     GHEVGDTTLHMFGGLLRQRLRRDDVVARYGGDEFIVLMENTSMDEAKKIAENLITVTK
                     KSLKEGTLSELNLGCSIGITQMNHHSASVNTVIKEADLACYAAKQRKINGSVCVYNSM
                     ITTKNNAINFSGNQITP"
     gene            3708..4079
                     /locus_tag="JBH85_09555"
     CDS             3708..4079
                     /locus_tag="JBH85_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019350037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HAU0946447.1"
                     /translation="MTHFLKKRTLLLMVPAVLVGCSYNAKLTPEGEKVTIVQSGKPTK
                     NCTFLGEVRAYDRNGMSQSYQSHEHLIKDELNILRNKAALLGANTLRVTEHQQTYEGN
                     PKNDFVADHGMAGKAYRCKTN"
     gene            4104..5432
                     /locus_tag="JBH85_09560"
     CDS             4104..5432
                     /locus_tag="JBH85_09560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0946448.1"
                     /translation="MKHYRAWQFSCWIVLLLCSYSAIAGNALILQEITQIALANNKDL
                     KAARYNVAIAKARLIQAGLWPNPNLNLSNNDDRLFNDEGEYSRSAGFSQAFPISGRIA
                     KQKTVARLDVMKAIAEIREAERQLSAKVANAFYAAVITERRLQQLNYLLRINKELVNV
                     IHNRYHAAEISKLDENAARIEYLRIVQEKHLLHSLRISQMATLNQLMGRDANSPLSLK
                     ADLNTGQNFPELPALKTLALNNRPDRQSIALSINRAIADRRLAKAERFADWTVGLGVQ
                     QDKIVVEEGPPQPADRTLGMTLSVPLPLLNQNQGRILEASRTGTQAMMALRALNLSIE
                     TEIASNYAQLKALRMSLRETQSVSLKIGVESVKLARDSYENGQISLLNVLQVQKQQND
                     LQMTYLTTLEKYLQVYVALCTAIGPGHTQGFCPYLAYQRNGYDDGITTAN"
     gene            5410..6378
                     /locus_tag="JBH85_09565"
     CDS             5410..6378
                     /locus_tag="JBH85_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0946449.1"
                     /translation="MALQQRIRAILLTSVFLGLLIHAQGVFAHGEEIEVSEGGAKGPV
                     HLTPQQTKMLEIKVAKATNRPMAQMLGLNGQIQLLPDAQADVSIRISGSVTAIDVNLG
                     DGVKTGQRLATVQSRLVGNPPPSVAVTAPIAGIIDARNINLGQAVEPNTVLFHISNRD
                     KLLVIAQVYEEDLGKVKVGQEVNIHALSYPKLVFPGKVTLIEPNLDPLTRTVNLRITL
                     NNEKELLKPGMFVRANVILAHNEAALAVPNTALLQADNEQFVFVQNGDEYERVDVKVG
                     AVDDDYSEITDGLVPGDLVVTQGNRELYTLWLTGGSKPQSGQEEHH"
     gene            6379..9594
                     /locus_tag="JBH85_09570"
     CDS             6379..9594
                     /locus_tag="JBH85_09570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HAU0946450.1"
                     /translation="MFTRLIAWSLHNRPLILALTIILCLLGGYTLKQMPVDVFPEFAP
                     PQVVVQTQAPGMATQDVETLVTYPLESAINGTPGVASVRSKTSVGLSTITVVFDDKTD
                     IYRNRQLVNERIQQIINRLPPGVSSPVMLPVTSAVGWLLKYALISRTASPETLRTLSD
                     WTIRPRLLALGGVASVVSLGGEVKQYQVQLEPKRMLAYGITVEEVRQALATGNQNVPG
                     AFVHQAGTEFVVSTIGRIKTLEDIKKTLIVVRNGVPITINNVATVAFGGEIKRGDGAY
                     NAENAVIGTVSKIFGADTVTTTQKVEHALADIKKSLPAGVELITDVFRQANFIESAIH
                     NLTKALIEGGIIVIAILFLFLMNWRASFITFLSMPVSFIVGILVLHYFGFGINSMTLG
                     GMAIAIGEVVDDGIITVENVVHRLRLNRLAKKPLPAIEIVFDAVLEIRSSVVYATIII
                     SLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLVVSITMVPALCYLLLVRKTEKQQDT
                     KVVMHALSQEERYHLTEEEAAQHAQAETRFVIWLKKHFLTGLNWSLAHCKTVVAMAIG
                     AFLFALALLPFFGTSFLPEFHEGNFIIVMSTLPGTSLDESMRLGNQVSKTLLKYPQVI
                     SIAQRAGRSELDEDALPPNVSEFDVRLNFDKDKTMSPDELLQRIRADLANIPGALFNV
                     GQFIAHRMDEVLSGVRAQVAVKLFGDNLATLNELGQSVEAILKTIPGIVDVNKEQQIN
                     VPQLIITIDREKAARYGVNVGQISEDVQVLLNGMTVSSILEGQRTFDLYLRMNETGRD
                     SIKAIQNMLIDAHGVANQETKIPLRAVADIRLEPQPFAINRENVQRVLVIAFNVQERD
                     LGSVIQEVQQRVKEKVTLPSGYFIQYGGQFESQQQASRVIIVFGGLAIFIMLILLHKA
                     FGTFREALLVMFNLPLALIGGVVSLYLASGDMSVAAMIGFITLFGIAARNGIILVSHY
                     NQLRIQGQSREQVVIQGTLDRLVPVLMTAATAALGLIPLLWGSPAGKELERPLAQVLL
                     GGLFTSTFLNMFVVPTVYNAIEAWREQHLYLKENQNPQGES"
     gene            9594..10058
                     /locus_tag="JBH85_09575"
     CDS             9594..10058
                     /locus_tag="JBH85_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAU0946451.1"
                     /translation="MSRIMECINKKAVDLFSLLVVLLALLSPLHAATNPDEQAQSIPT
                     TIPAIWEAIDERATAINKALANNQLDTIHQHAFAIRDLVKALPGLSKNLSEEQLKNLQ
                     QNVGYTEQLAKRLDKTGDANDKEGTKVNWQKLQKVLEQIRATYSLSGASTTP"
     gene            complement(10396..10515)
                     /locus_tag="JBH85_09580"
                     /pseudo
     CDS             complement(10396..10515)
                     /locus_tag="JBH85_09580"
                     /inference="COORDINATES: protein motif:HMM:PF13340.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         3157 a         2210 c         2318 g         3149 t
ORIGIN      
        1 ctttaatggc agcaacacta attagttaat taatagcaaa ataatttcgt accgttgata
       61 aattccttat tttgaaatat aacttatgtt atttgggtga tttgtgtttt tattaatcgt
      121 gtaaatacag gttttaggca gcttaagata ctgtacgatc tttataaaac ataaaaagtg
      181 aaagaaagcg aaagctataa cggctataac ttcttctttc actatactaa acacccataa
      241 gaagataaga cacaagaatt gctggaacag tccgaccgga ctcttctcaa aacccatata
      301 aggaatattg aatggataac atttttacgg atgcattagc acgattagat gttgcctatc
      361 agtatgcaga aattgatcca gaagctatcg agagattgaa gcatcctcaa gcaatcattc
      421 aaatgtcttt acctcttcga aaagatgatg gcagtttagc tatgtattcc gcctatcgag
      481 ttcatcataa caatactcgt ggcccaacta aagggggtat tcgttttcat cctctcgtta
      541 ctctcgaaga aataaaggct ctgtcgtttt ggatgacaat taaatgcgca gtaattggta
      601 ttccttttgg aggtgcgaaa ggtggaattg tagttgatcc aaaacaactt tccagattgg
      661 aattggagcg tttaagccgg acttacttgg agcatttttc cagttttatt ggacctaaca
      721 aagacattat ggcacccgat gtttatacaa atgccatgat tatgggctgg atgatggatg
      781 aatattctaa acttaaacaa gaatacagtc ctgctgttat caccgggaaa cccattgctt
      841 taagtggcag ttatggacgg gaggatgcga ctggtcgtgg tgctttttat tgcattaatg
      901 aattagctaa gaaaaaaaat tggaaacccc aaaacattcg tgtagcaatt caaggatttg
      961 gaaatgcagg acagcacatc gcactctgtc tatatgagtc aggttataaa atagtagcag
     1021 taagtgattc tcaaggaggt atctatcgag caaaaggact tgatattcct acgttgattc
     1081 ataaaaaaaa cagtagtaag aatattcaag cagtttactg cactagatca gtatgcgaat
     1141 gtgaactagt tgaagcgaac aaaatttcaa atgaagaact tctggaattg gatgttgatt
     1201 tacttatccc tgccgcatta gaaaaccaaa ttaccaaaga taatgcagca aaaataaaat
     1261 cacctgtgat tgtagaaatt gccaacggcc caacaatgct agatgctgaa cctattttaa
     1321 aaaataaaaa tattttagta gtacccgatg tgttagctaa tgcgggaggg gttgctgtca
     1381 gttattttga atgggtacag aataaaactg gatattactg gagtggtgaa caagtacaac
     1441 aacggttaca tgatattatg gtacctgagt ttttaaaagt gtatcaaata atggaaaaga
     1501 ataaaattga tatgcgtaca gcagcttata tacacgccct aaatcgttac ggcgaagccg
     1561 tcgtggccca agggacacaa caacattatt ttagtacgac atgaatcatg ctcaattgag
     1621 gttctaaaca cagcaataat aggtactgtt tttaaacaat atgcttaaca gccaattcat
     1681 tatgatggcg agagagtatt ttcatggatg aagccaagaa aagtgttgag agccttgata
     1741 tttgtagcaa gccatcgtct taaagacgaa atactatcaa cccttgattt aagatacttc
     1801 attggtgtca ctcagacaaa ccaccattct gcatcaatta ataccgtgat taagatgcta
     1861 atttagccta tttagcagca aagcaaaata aatggttcgg tttgtgtcta taaccctaag
     1921 ctttcaatag aaataaggag ggcagcaaga gataaaacat acacagacat atcaatgtct
     1981 tatgtgccat ctttatttaa gtttgcaggt ccaaattaat ttttccctgc aaactccatg
     2041 cccaaacaaa ccgcacgcca tacctctatc ctcaaattac tgatggtttc cctccatgcc
     2101 acttccttcc atgttctgca tacccatacc catcatttcc atcttttcgc ctgccttcat
     2161 ttccttaccg acctctgggg tcaccaaaca ctctatcgtc tttccatcct gtgttttaaa
     2221 catcgccttc atggggcatc ctttcatctg gtttccctgc atgtggcatc ctttcatgtg
     2281 gcttccctgc atgctatgca tgctcatcat ttccatcatg tcacccgtct tcatgtcctt
     2341 actgccctct ggagccatca aacactgtat cgtctttcca tcctgtgttt taaacgtcgc
     2401 cgtcatttgt ttattttctg tgtcggctgc ctgcgccaat gaactgataa ggccaaatga
     2461 taatatggcc ggaattaaaa ataatctaat cttcatggtt ttctccctta aacgatgaat
     2521 agtgtcacga tggccgataa tgacaggccg ctattcaatt ttagacaatt ttattaattt
     2581 ttgctgtttt tttatttgcg cccttaaatg tttctgacaa atcaagagac agaatctata
     2641 ctaaaaggaa tcaatcaggc tgtttttaag gcaaaattat ggtgttccca gtcgtaatga
     2701 tcgtgttagg tattgtcctt cttatcagtg gagcctattt aatcaataag ttacttcaaa
     2761 aaacaaatca ttatcgcagg cagtggttca gttatcttgc ttttattgcg gtttttattc
     2821 tcagttattc agccagcatt ttttacggtc tattagtcga tccccactgt cttaataatt
     2881 tttatgccag cgtgctttta ttaggtgcta cctatatcta ttcatcttgt cgtcttatga
     2941 ccaataccat tcaaaaaatg gagttgatgg atgattttaa aaatcgctat gaagtattac
     3001 ggcatcacgc aacctatgat tcgctgacag gctgcaataa tcgagagtat ctttttgaga
     3061 tgatgaacac acgatttcaa caagtcaaga tgaatgaagg ctctgttatt gttcttttta
     3121 ttgatatgga ccgatttaag acggtcaacg atcgctatgg tcatgaggta ggtgacacca
     3181 cgttacacat gtttggtgga ctcctaaggc agcgcttgcg aagggatgat gtagtggctc
     3241 gttatggtgg ggacgaattt attgtcttga tggagaacac ctccatggat gaggcaaaaa
     3301 agattgctga gaatcttatt acggtgacga aaaaatctct aaaagaaggt actctatctg
     3361 agcttaatct gggttgctcc attggcatta cccagatgaa tcaccactcg gcttcagtga
     3421 ataccgtgat taaagaagct gacttggcct gttatgcagc aaaacaaaga aaaatcaatg
     3481 gttcggtttg tgtctataat tccatgatta cgacaaaaaa taatgcaatc aattttagtg
     3541 gaaatcagat taccccataa ggagtaaaag ccaacaaaaa ccagtctctc aataacagtt
     3601 cattgactct aatgagtccc ctttttcttc ttgatgtcat gccttgttta atcacattgg
     3661 ataagagata ctgaaaggat agaataacaa aaaaaaggta ttgattaatg acacattttc
     3721 taaagaaacg cactctccta ttaatggttc cggcagtcct tgttggttgt tcttataatg
     3781 ccaagttaac tcctgaaggc gaaaaagtaa ccattgtaca gtcaggaaag cctacaaaga
     3841 attgcacttt tttaggtgag gtcagagcct acgatcgcaa tgggatgagc caatcttatc
     3901 aatcccatga gcatttgatt aaggatgaac tcaatatctt aagaaacaag gcagcgcttt
     3961 taggagcaaa tacacttcgg gtaaccgaac atcagcaaac ttatgaaggc aatcccaaaa
     4021 atgattttgt ggcggatcat gggatggcgg gtaaagccta ccgctgtaag acaaattaat
     4081 aatcattttg agtcttcccg tttatgaaac attatcgtgc ttggcagttt tcctgttgga
     4141 tagtgctcct gttgtgctcc tattcggcaa tagcagggaa tgcattgatc cttcaggaaa
     4201 taacccaaat tgctctagca aataacaagg atttaaaagc ggctcgttat aatgtagcta
     4261 ttgcaaaggc ccgattgatc caagccggtc tttggcctaa tccaaacctt aatctctcaa
     4321 acaatgatga tcgcttgttt aatgatgaag gagagtattc gcgcagtgct ggttttagtc
     4381 aagcattccc tatttctgga cgtattgcaa aacaaaagac tgtcgcacgc ctcgatgtca
     4441 tgaaagccat cgccgaaatt agggaggccg agcgtcaact cagtgccaaa gtggcgaatg
     4501 cattttatgc cgcggtgatt acggagcgtc gcctgcaaca attgaattat ttattaagaa
     4561 tcaacaaaga attagtgaac gtcatccata atcgttatca tgccgctgaa atttcaaagt
     4621 tggatgagaa tgcagctcgc attgagtatc tgcgcattgt tcaagaaaag catttattac
     4681 atagccttcg catcagtcaa atggccacac tgaaccaatt gatgggccga gatgcgaatt
     4741 ctcctttatc tcttaaggct gacctaaata cagggcaaaa ttttcctgaa ttacctgcgc
     4801 taaaaacgtt agcacttaat aatcgtcctg accgccaatc cattgctcta tcaattaacc
     4861 gcgccattgc cgatcgccgc ttggcaaaag cggagcgctt tgctgattgg acagtagggc
     4921 ttggtgtcca acaagataaa attgtggtgg aagagggacc accccaacca gccgatcgca
     4981 ctttgggcat gacgctttct gttccacttc ctcttttaaa tcagaatcag ggacgaattt
     5041 tagaggcaag tcgcacggga actcaggcga tgatggcgtt acgcgccttg aatttaagca
     5101 ttgaaacaga aatagcgagt aactatgccc aattgaaagc acttaggatg agccttagag
     5161 aaacgcaaag cgtatctctt aaaataggcg ttgaaagcgt gaaactggcg cgtgactctt
     5221 atgaaaacgg acaaatttcg cttttgaatg tgttgcaagt gcaaaaacaa caaaatgatt
     5281 tgcaaatgac ttatctcacg actttagaaa agtatttaca agtgtatgtg gctttatgta
     5341 cggccattgg ccctggccac acacaaggat tttgtcctta cttagcttat caaaggaatg
     5401 gttatgatga tggcattaca acagcgaatt agagcaattt tactcaccag tgtttttctt
     5461 ggtctcctca tccatgctca gggagtgttt gcccatggag aagaaatcga agtgagtgaa
     5521 ggaggagcca aaggtcctgt gcatttgaca ccccaacaaa ccaaaatgct cgaaatcaaa
     5581 gtcgcaaaag caaccaatcg tcccatggcg caaatgcttg gtttgaatgg ccaaattcaa
     5641 ctcttacccg atgcgcaggc ggatgtcagt attcggatta gtgggagcgt gacggccatt
     5701 gatgtgaatt taggcgatgg tgtcaagaca ggacaacgct tagctactgt gcaatcaaga
     5761 ctagtgggta atcccccacc cagtgtggcg gtcacagccc ccattgccgg catcattgat
     5821 gcgagaaaca tcaatttagg tcaagccgtt gaaccgaata cggttctttt tcacatcagc
     5881 aaccgcgata aactgttagt cattgcccag gtttatgaag aagatttagg caaggttaag
     5941 gtaggacagg aagtcaatat tcatgcgttg agttacccaa agctggtttt tccaggcaaa
     6001 gtcactttaa ttgaacccaa tcttgacccg ttaactcgca cagtgaacct gcgaattact
     6061 ttgaataatg agaaagaact actcaaaccg ggcatgtttg ttcgtgccaa tgtcatttta
     6121 gctcataatg aagcggcact tgcggtgcct aataccgccc ttttacaggc ggataatgag
     6181 caattcgttt ttgtgcaaaa tggggatgag tatgaacgag tggacgttaa agtaggtgca
     6241 gtagacgatg actactcaga gattacagac ggcttagtgc ctggcgacct cgttgtgact
     6301 caaggcaatc gcgaacttta tacactatgg ctcactgggg gcagtaaacc gcagtcaggc
     6361 caagaggagc atcattaaat gtttacgcga ttaattgcct ggtctttaca taatcgccct
     6421 ttgattttgg cgttaacgat tatcctttgc ttactgggtg gctatacctt aaaacaaatg
     6481 cccgtggatg tttttcctga atttgctcca ccacaagtgg tggtacaaac ccaagcgcct
     6541 ggtatggcca cccaagatgt ggaaactttg gtgacctatc ccttagaaag tgccatcaat
     6601 ggaacgccag gagtagccag tgttcgctca aaaacctccg tcggactatc gacgattact
     6661 gtggtatttg atgataaaac ggatatctat cgcaatcgcc aattggttaa tgaacggatt
     6721 caacaaataa taaaccgtct tcctccaggt gtctcgtcac cagtgatgtt gcccgtcacc
     6781 tcggcagtgg ggtggctact taaatatgcg cttattagtc gaactgcaag ccctgaaaca
     6841 ttacgtacac tttcagactg gaccatccgt ccgcgccttt tggctcttgg tggcgtcgct
     6901 tccgtggtgt ctctaggtgg ggaggtgaag caatatcagg tccagcttga acctaagcgc
     6961 atgctggcct atggcatcac ggttgaagaa gtgcgccaag cgttagcgac aggaaatcaa
     7021 aacgtgcctg gtgcttttgt tcatcaggca ggtactgaat tcgttgtcag caccattggg
     7081 cgcattaaga cgctggaaga cattaaaaaa acactcattg tggttcgtaa tggagtcccc
     7141 atcaccatta acaacgtggc cactgtcgct tttggtggtg aaatcaaacg aggggatggg
     7201 gcttataatg cagaaaacgc ggtcattggt accgtttcta aaatcttcgg tgccgatacg
     7261 gtaaccacga ctcagaaagt ggaacacgct ttagccgata tcaaaaaatc tttgcccgcg
     7321 ggtgttgagt taatcaccga tgtgtttcgt caagccaatt tcattgaatc agccattcac
     7381 aatttgacca aagcccttat tgaagggggc atcattgtga ttgctatatt gtttctcttt
     7441 ttaatgaact ggcgagcttc cttcattacc ttcctctcca tgccagtttc ttttattgtg
     7501 ggtattctag tacttcacta ttttggtttt ggcattaact ctatgacgtt aggagggatg
     7561 gcaattgcca ttggtgaggt agtggacgat ggtattatca ccgttgaaaa tgtagtacat
     7621 cgactaagac tgaatcggtt ggccaaaaaa cctctacccg ccattgaaat tgtttttgat
     7681 gcggttttgg aaattagaag ttcagtggtc tatgcgacca ttattattag cttggtgttt
     7741 ttgcctattt tctttttgtc aggtattcct gagcgaattt ttagcccttt agcgattgct
     7801 tatatcgcct cagtattagg ttctcttgtg gtctctatta ctatggtgcc agctctttgt
     7861 tatcttcttt tagtacgaaa aacggaaaaa cagcaggata ctaaagtagt gatgcatgct
     7921 ttatctcaag aggaacgtta tcatttgacg gaagaagaag cggcccaaca cgctcaagcg
     7981 gaaactcgtt ttgtgatttg gttaaaaaaa cattttttaa ctgggttaaa ttggtctctg
     8041 gcccattgta aaacagtcgt ggccatggca atcggtgcct ttcttttcgc cttggccttg
     8101 cttccttttt ttgggacttc gttcttacct gaatttcatg agggtaattt tattattgtg
     8161 atgagcacgt tgcctggaac ttcattggat gagtccatgc gattaggcaa tcaagtcagt
     8221 aaaactttgc tgaagtaccc gcaagtcatc tccattgccc aacgggcagg acgcagtgaa
     8281 ttggatgaag acgcactacc acctaatgtt agtgagtttg atgtgcgctt gaattttgac
     8341 aaagacaaaa ccatgtctcc ggatgagttg ttgcaacgca ttcgcgcgga tctagcaaat
     8401 atcccaggag cactgtttaa tgtagggcaa tttatcgctc atcgcatgga tgaagtgctc
     8461 tcaggcgtca gagcgcaagt ggcggtaaag ctctttggcg ataatcttgc tacccttaac
     8521 gaactgggtc agtcggtcga agcgattttg aaaaccattc caggaatagt ggatgttaac
     8581 aaagagcagc aaatcaatgt gcctcagtta atcattacca ttgaccgaga gaaagcggct
     8641 cgttatgggg ttaatgtagg gcaaatttct gaggatgtgc aagttcttct caatggaatg
     8701 acggtatcga gtattctcga aggccagcga acgttcgatt tgtatttgcg tatgaatgaa
     8761 acagggcgag acagcattaa agccattcaa aacatgctca ttgatgctca tggagtggca
     8821 aatcaggaaa ccaaaattcc tttgcgtgcg gtggctgata ttcgcttaga gcctcagcct
     8881 tttgcgatta accgcgaaaa cgtgcagcgc gtcttagtga ttgcctttaa tgtgcaagag
     8941 agggatttag gtagtgtgat tcaagaagtg caacaacggg ttaaggaaaa ggtcacccta
     9001 ccgagcggtt attttattca atatggtggt caatttgaaa gtcaacaaca agcctcacgc
     9061 gtaattattg tgtttggtgg gcttgctatt ttcattatgt tgattctgct tcacaaagcc
     9121 tttggcacgt tccgtgaagc actgctcgtg atgttcaact tgccactggc tttgattggt
     9181 ggggtggttt ctttgtatct tgccagtggt gacatgagtg tcgcggccat gattggtttt
     9241 atcaccttat ttggaattgc ggcacgtaat gggattattt tagtgagtca ctacaatcaa
     9301 ttgcgcatcc aaggacaaag ccgtgaacaa gtggtcattc agggcaccct tgaccgcttg
     9361 gtgcccgtgt taatgacagc agcaacggcc gctcttggct taatccctct gttgtggggt
     9421 tctcctgctg gaaaggagct tgagcgtcct ttggcccaag tattgctagg aggattattt
     9481 acctcaacgt ttttaaatat gtttgtagta ccaacagttt ataatgccat cgaagcatgg
     9541 cgtgagcagc atttgtattt aaaggaaaac caaaaccctc aaggagagtc atgatgagtc
     9601 gaataatgga atgtattaat aagaaagcag tggatttatt ttctttgctg gtggttttat
     9661 tggctttatt atcccctttg catgccgcaa ccaaccctga tgagcaggct caatccatcc
     9721 caaccaccat tccggccatt tgggaggcaa tagatgaacg cgcgacagca attaataaag
     9781 cacttgccaa caatcaattg gataccattc atcagcatgc gtttgcgatt cgggacttag
     9841 tcaaagcact acctggttta agtaaaaact tgtccgaaga acaattaaaa aatcttcagc
     9901 aaaacgtggg atacactgag caattggcaa agcgtcttga taaaaccggt gacgctaacg
     9961 ataaagaagg cacgaaggta aactggcaaa aattgcaaaa ggtgcttgaa caaattcgcg
    10021 ccacttattc cctttcaggt gcttcgacta ctccttgatt cagtagtcag gctgtatgat
    10081 gatgagatgt gtcttttggc tttcagttgg catgctaggc tatttgctta gacactgatt
    10141 cgttagaaat cacaaaagaa gagttcagct ggaatgatct agccgttcta ctcatcccaa
    10201 acctcaagat cggctactta atagctgcct tgaggtcctc tgccatggga ctcaccattg
    10261 cctaaaaata gtactaacaa cttaaaaccg gacataaaaa atataattag tcgagtagcc
    10321 tctcgactaa ttgcctcaca cttttttatg cgctccatga gcatgtactt ttacgtgact
    10381 tgcatcaatc ataagtcatt cataatcaga cttgttaact aaaatctcaa gcaagcgctc
    10441 ccatagccct ttaccatgcc aacgacagaa acgtctttga gagcttttcc aatcaccata
    10501 accaggtggc agatcgctac atccatgcta ttaaaatgca cacaaggtta acacgtaatc
    10561 atcgtgtaac gaaccatcca gttaaaacga agaatagatt taatcaatgt gactgaattt
    10621 gttcggtggg ttaataacgt ttttaaataa gaaataaaat aattaaattc aattgaacct
    10681 acgcctattt aaacaaatca gaatgagagc cagttctcga taatcttagc aactgtatac
    10741 actcatcctc gggcttgggg agcaatggaa cagccaaccg acttaaggac tacatgggtc
    10801 tcttaatatc tataattcgg tatgtttcat ttta
//
LOCUS       DACVWI010000103        10760 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.103, whole genome shotgun sequence.
ACCESSION   DACVWI010000103 DACVWI010000000
VERSION     DACVWI010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10760
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.103"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1459
                     /gene="ceg17"
                     /locus_tag="JBH85_09585"
     CDS             <1..1459
                     /gene="ceg17"
                     /locus_tag="JBH85_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg17"
                     /protein_id="HAU0946452.1"
                     /translation="FTKEPNGLAIANNKEDKKYAPMGWIIHKKTGEVLPQEVTEDIIR
                     VSAIAEGGFYEKRPTQQKILQSGNLMNSSGLGLFTQNQAFNAMYVIFDYLQRYNFDPR
                     PLLDNSLQIAYNRLQSTLEKDPSLIDDFLVGALQDEMVQHLRVSQPKSIRSVLPIRFT
                     NSFPVTINNLKTIAYAFGIKDKSEQPIFRGFDDNAGLFKSENMIDSQISGTLVTPSFN
                     TAAHVAAIVSTAELIAEQMILEQLIPDAFAKKNPEDSALFILLVDILGKEEADKLFTE
                     LMDETAKLPTIDNKLIVGAQFAYCKKLVQKLQNGLGLDSMNILLCKLSKPGLSTQEVL
                     ENLDSRELEQLTKVLERLFKIGDILQELPLTTAAPEYSRGINAGLAPLIAHVNPHLAV
                     KLNIQTQSIIKADIPAIDKEKVRDRMSTRVYNRCPFLAKQSKEQKPQQVSETNDVLVS
                     KNTGPSFFQTIRENQGKITAVLLGAAYIGLSSLLG"
     gene            1968..2816
                     /locus_tag="JBH85_09590"
     CDS             1968..2816
                     /locus_tag="JBH85_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0518 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946453.1"
                     /translation="MTDLRTEIESLIHNGLLPDREYVSAKRFINHYANTNEFWAGLAL
                     VGITPIINGLYACYYASRTVWATLRTVGNLLILKPGLALDALKDVGCHLTLSTCLLLM
                     APIHALTHAVEILTRVISSWFVGQEPRHDLLETGLMAKWANRVSGYQMVNELPSSNYL
                     NKARFFSSYNNAWDCLEQMASPMTSLAKGGFHSLVEALYGVESAIECIVNLAICKPLH
                     AKENFHNLQVHFGLAVSLAVMTPINALVEGIAFMTRLGTTWVSACLKPEVTETEHENT
                     TAYQFN"
     gene            3126..3956
                     /locus_tag="JBH85_09595"
     CDS             3126..3956
                     /locus_tag="JBH85_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAU0946454.1"
                     /translation="MDLGFPTFIYGTAWKEKRTSELVELALTTGFQGIDTANQRKHYY
                     EEGVGYALQQYYKKSGILRDDIFLQSKFTYTHGQDHRKPYDDTASLTIQVQQSFASSL
                     EHLNTDYLNSYILHGPYYQYHFSDEDKEVWNKMESLHKDGKVKHLGISNVSYEQLVEL
                     ISFASVKPKFVQNRCFARLLWDKQIRNYCQAHGIIYQGFSLLTANQYELRHPKLENLS
                     KKHEKSIEQIIFRFSQQIGMLPLTGTTNLDHMKEDLAIHQFRLTDDEINFIENIAFIP
                     "
     gene            complement(3984..4772)
                     /locus_tag="JBH85_09600"
     CDS             complement(3984..4772)
                     /locus_tag="JBH85_09600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0946455.1"
                     /translation="MRNHYMSMYDMRQFFKTYFSSASEKSILVKLLDKRFHPPSHTAN
                     ILDLGCHDGALMKNIVNAYAKRLPEKLVITGVDPSLQAIKEYAKADFPIPVQTNTFAG
                     TAEDYFDVCTDHFDWIFASQCLYWSPDLPKIIKQIHETGDSALIVIRGCHGIYEIQSQ
                     FRHYIGNHLEKFYTDKEVEMALRTQKILFQKESLSTSIRLPDKDSIELKWLILFFLQM
                     EEESLGDKIFCEVRDWITSRTSGSIHHEVHFFWLGNAILQGITI"
     gene            complement(4793..5725)
                     /gene="legD2"
                     /locus_tag="JBH85_09605"
     CDS             complement(4793..5725)
                     /gene="legD2"
                     /locus_tag="JBH85_09605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegD2"
                     /protein_id="HAU0946456.1"
                     /translation="MDNLLNEKKLTIFTSNEIQDNLNRVLKDYEQNGIIGLNGYLNQA
                     NRISLLNELEIMQKDAEQDIARYWNNKIIHFYSKDPLKPESVDREYVTEPYFQASSNK
                     AHVFYEVIDNMRVVNRIGHGMHLINRYPMMQRAVYDSPVLLDLLKGIGFKKPICHLSV
                     YIPKYPNGIGSEVRPHQESTFAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLK
                     WVSKVDRETKTRHFEQVHQLHIPDFMTEREFYTALEVKAGDALLFHGNFVHCSPMNTS
                     KNSRKALSFQFIETYEVDYPETNWLYPPNKVYLY"
     gene            complement(5706..5924)
                     /locus_tag="JBH85_09610"
     CDS             complement(5706..5924)
                     /locus_tag="JBH85_09610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946457.1"
                     /translation="MFSILLVILIEHAIRFLVMASLFFIKEVITVSDKPDSPYILSLQ
                     ADGNLFPGILQSNLAMTLVWSCYGQFIE"
     gene            complement(6065..6328)
                     /locus_tag="JBH85_09615"
     CDS             complement(6065..6328)
                     /locus_tag="JBH85_09615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946458.1"
                     /translation="MADQPPKSKWHEIKRLSEGDNKVDNNQAPVSTADRIKKLYLDTQ
                     VGSPIDTVEEADAQRNNLGPKDTKIENSSPENDEPNPDIPTPG"
     gene            complement(6498..7619)
                     /locus_tag="JBH85_09620"
     CDS             complement(6498..7619)
                     /locus_tag="JBH85_09620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946459.1"
                     /translation="MKHFDFSLRIWPISLWFVKHSGVKNPMNEVIIREITSEDKEMFL
                     CAMQSSQALHHPWVKAPIIPEEFDEYFSRYQKPNQKSYLLLSDNNLAGVFNISEIVRG
                     YFQNAYLGFYVVAAYAGKGYMSTGLKLILTKVFKDMGLHRLEANIQPENTRSIWLVKK
                     NGFRYEGFSPRYLRVNDVWQGHEHWAMTYEDFIKDNNEVLEKDHIDIVAYNTEWPLLA
                     KAEMVKLRASFPANSVIDIQHVGSTAIPGMASKPIIDIQIAVRSLEEMKIIAVPILQK
                     LDYEYWEDNPDPERMFFVKGMPPYGNGRTHHVHIVEASSRHWKGKTFFRDYLLSHPEA
                     AEKYQQLKIKLAQEHKYDREQYTDAKSEFINQILKLAQN"
     gene            complement(7758..9038)
                     /gene="serS"
                     /locus_tag="JBH85_09625"
     CDS             complement(7758..9038)
                     /gene="serS"
                     /locus_tag="JBH85_09625"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HAU0946460.1"
                     /translation="MLDNQLLRENPQYVATQLLKRGFQFDAVTFSQLEEKRKALQVST
                     QSLQNERNLRSKAIGEAKSRGENIGPMREEVNKLGAILEQQKTELDEVLKQIEVISLS
                     LPNIPHESVPVGKDELDNQEIRKWGDVPAFSFPVKSHDELGEALGQMDFALAAKITGS
                     RFVVMKGHLARLHRALIQFMLDIHIQQHGYQEIYVPYIVNADSLLGTGQLPKFEADLF
                     KLTGDNGYYLTSTSEIPVTNTVREMILSAEQLPIRYVCHSPCFRSEAGSYGKDTKGMI
                     RQHQFEKVELVWITKPEDSYNALEQLTQHAEIILQRLNLPYRVVALCTGDIGAGSAKT
                     YDLEVWLPSQNTYREISSCSNMEAFQARRMKARFRNPDTNEIQLVHTLNGSGLAVGRT
                     LVAIMENYQDEHGNIHIPDALKPYLGGIDIISVK"
     gene            complement(9060..9464)
                     /gene="crcB"
                     /locus_tag="JBH85_09630"
     CDS             complement(9060..9464)
                     /gene="crcB"
                     /locus_tag="JBH85_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HAU0946461.1"
                     /translation="MVVAPYLAVAIGGSLGAMSRYLVTIMAQNAWGIKFPYGTLLVNT
                     LGSFLAGFFLIVLVGRFSAEESFRLFLFTGFLGAFTTFSSFAAESLFMFEQGYWFKLM
                     TNILVNNVGSLSMVFIGTLVAKYVLLGHQGSN"
     gene            complement(9468..10238)
                     /gene="lpxA"
                     /locus_tag="JBH85_09635"
     CDS             complement(9468..10238)
                     /gene="lpxA"
                     /locus_tag="JBH85_09635"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HAU0946462.1"
                     /translation="MIDERAMIHPSAKLASGVSIGPGTVIGADVEIGENTWIGPHVVI
                     EGPTVIGKNNKIFQFASVGDEPQDITYKGEPTRLEIGDNNVIREYCMISRGTVKGGGV
                     TRIGDSNYLMAYSHIGHDCMVGNHIIMVNYAALSGHVTINDYAIIGPYAAVHQFCQVG
                     AYAFIARATYVTKDVLPYVMIAGHTTSACGINTVGLRRRGFSSAAIDCLRRAYKIIFR
                     KGLTVQQAVSELELIQNECPEIIPMIDALNQSTRGIVR"
     gene            complement(10235..10687)
                     /gene="fabZ"
                     /locus_tag="JBH85_09640"
     CDS             complement(10235..10687)
                     /gene="fabZ"
                     /locus_tag="JBH85_09640"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HAU0946463.1"
                     /translation="MNESIDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTIN
                     ENFFTGHFPGNPIMPGVLMLEALAQACAILASLSRQPKEGHEFLHYFAGIDNARFKQV
                     VTPGDQLRLEVRLAGQKRDFWRMHGEAYIGDKLACSADLLSAAKEIKK"
BASE COUNT         3373 a         2154 c         1862 g         3371 t
ORIGIN      
        1 atttactaaa gaacctaatg ggcttgcaat tgctaacaat aaagaggata aaaaatatgc
       61 tcctatgggc tggataatcc ataaaaaaac aggtgaagtt ttaccgcaag aagttacaga
      121 agatattatt cgtgtttctg ccatagccga aggtgggttt tatgaaaaac gccctaccca
      181 gcaaaaaatc cttcaatctg gtaatttaat gaattcaagt ggtttagggt tattcactca
      241 aaatcaggct tttaacgcaa tgtatgtaat ttttgattat ttacaaagat acaactttga
      301 tccacgtcct ttgttagaca attccttaca gattgcatac aaccgattac aatcgactct
      361 agaaaaagat ccttctttaa ttgatgactt tcttgttgga gctttgcaag atgaaatggt
      421 gcaacatttg agagtgagtc agcctaaaag tattcgcagt gtcttaccga ttcgctttac
      481 caatagcttt cctgtaacaa ttaataatct aaagactatt gcttatgctt ttggaattaa
      541 agataaatca gaacaaccta tatttagagg atttgatgac aatgctggtt tattcaaaag
      601 cgagaatatg attgattctc aaataagtgg cacattagtc acaccatctt tcaatacagc
      661 tgctcatgta gcagcaattg tttcaacagc agaactgatt gctgagcaga tgattttaga
      721 gcaactaata ccagatgctt ttgctaaaaa aaatcccgag gatagtgcat tattcattct
      781 cctggtagat attctaggta aggaagaagc tgacaagctc ttcactgagt taatggatga
      841 aacagcaaaa ctacctacaa tagataacaa attaattgta ggagctcaat ttgcgtattg
      901 caaaaaatta gtgcaaaaat tgcaaaacgg tttaggttta gactctatga atattctttt
      961 gtgtaaatta tccaaacctg gattaagcac acaagaagtt ttggagaatc ttgactcaag
     1021 ggaacttgag caattaacta aggtattaga aagattattc aaaattggag atatcttgca
     1081 agaattgccc ttaacgactg cagctccaga gtattctcga ggaataaatg caggacttgc
     1141 ccctttaatt gctcatgtta atccacattt agcggttaag ttaaatatac aaactcaatc
     1201 aataattaaa gcagatatac ctgcgattga taaggaaaaa gtacgcgatc gtatgtcgac
     1261 tcgtgtttat aatcgttgtc cttttttagc caaacagtct aaggaacaaa agccacagca
     1321 agtttcggag accaatgatg ttttggtctc caaaaacaca ggaccttctt tttttcaaac
     1381 aataagagag aatcaaggta agatcactgc agtacttctg ggagctgctt atattggtct
     1441 tagttccctt ttaggctaaa tttaatcctt ggcagtgaaa tgattattta tttcactgct
     1501 tctttatttc tgttcaactt tttgggagga tgcaataaga tttttttgat gacaaacctt
     1561 tttacaaact ccccaagtta gcaataatcg ccatacacga ggctactaaa aggtgctaca
     1621 actagtcgac ttcacattct tttggctttt ttaagattta ttttgaatct ggactttatt
     1681 taacctttct tttatccctg ttaataaatt ttgacaagat gtatacaaat atagttgggt
     1741 gcaataacag ttgtgttcaa tattatgatt tccataagac aattggtcag gcagtacctg
     1801 aaactcatgt gttcataaat aaggatagag acgggattta atttttgtcc agaaggcaaa
     1861 agaaaacaga tgcaaacatc aaatacaaca tgggccaata ttagtcattt atgttttttt
     1921 tggttatact ctccccgctt gtttaattaa catagagaga gaccataatg acagacctta
     1981 gaacagaaat tgaatcgctc attcataatg gattattgcc agatagagaa tatgtttcag
     2041 ccaagcgatt tattaatcat tatgccaata caaatgaatt ttgggctggt ttggcattag
     2101 taggaattac ccctattatc aatgggctat atgcttgcta ctatgcctca aggacagtat
     2161 gggccacctt gcgaactgta ggtaatttat taattttaaa accgggcttg gcattggacg
     2221 cgctcaaaga tgtgggttgc catttaactc tctctacctg tttactgctt atggctccaa
     2281 ttcatgctct gacacatgcc gttgaaattc ttaccagagt tatatcatca tggtttgttg
     2341 gtcaagaacc tcgccatgat ttattagaaa ccgggcttat ggcaaagtgg gcaaacagag
     2401 taagtggata tcaaatggtt aatgagttgc cttcatccaa ttacttgaat aaagccaggt
     2461 tcttttcttc ttataacaat gcctgggatt gtttagaaca aatggcatcc ccaatgacct
     2521 ccttggctaa aggcggattt cattcattag tcgaagcatt gtatggagtt gagtctgcga
     2581 tagaatgcat tgtcaatttg gctatctgta agcctttaca tgcaaaagag aatttccata
     2641 acttacaagt acatttcggt ttggctgtct ctttggctgt gatgacacca attaatgctc
     2701 tggtcgaagg aattgccttt atgacacgtc ttggtactac ctgggtttct gcttgcctca
     2761 aaccagaagt gactgagact gagcatgaga atacaaccgc ttatcaattc aactaattct
     2821 tacctgcctg ctacagtcgc ttgcgactgt agctcattaa aaaataccaa gctctttgtg
     2881 attaaggact gatttccttg tataattcca taaaattagt acgttcttcg aataaccttt
     2941 cgaattaatc ccgcctgttg tcttttaggc aaggatttgt aactattgaa aatgaaaaca
     3001 aatggtaaga caagaaatct caggaaaaac cctatgcaag acacacagtc agctatggtt
     3061 tgctctgttt tttgagtcaa aatagagtct gtttgcagat aataaatcga gaaggagatt
     3121 gaacgatgga ccttggcttt ccaactttta tatatggaac cgcctggaaa gaaaagcgta
     3181 caagcgaact ggtcgagctt gcattaacta ccggatttca gggtatagat actgcaaacc
     3241 aaagaaaaca ctattatgaa gaaggtgttg gatatgcctt gcaacaatac tataaaaaat
     3301 caggtatctt gcgtgatgat atttttttac aatccaagtt cacctatact catggccagg
     3361 atcatcgcaa accttacgat gatacagcaa gtctgactat tcaagtccag caatcttttg
     3421 caagcagcct tgaacattta aatactgatt atttaaattc ctatattttg catggccctt
     3481 attatcaata tcatttttct gatgaagata aagaagtctg gaacaaaatg gaatctctgc
     3541 ataaagatgg gaaagtaaaa cacctgggca tatcgaatgt gagttatgaa cagctagtcg
     3601 aactcatttc atttgcttcg gtaaaaccca agtttgttca aaatagatgc tttgccaggc
     3661 tattatggga taaacaaatt cgtaactatt gccaggctca tggaattatt tatcaggggt
     3721 tttctctgtt aacggctaat caatatgagt taaggcatcc gaaacttgag aatctcagca
     3781 aaaagcacga gaaatcgatt gagcaaatca tttttagatt ttcacaacag ataggaatgt
     3841 tgcctttaac tggcacgaca aatttggatc atatgaaaga agatcttgcc atccatcaat
     3901 tcaggctgac tgatgatgaa atcaatttca ttgaaaacat tgcctttatc ccataaaatt
     3961 ttttttcgat ttgactggga aattcatatt gtaatcccct gtaaaatggc attccctaac
     4021 caaaaaaaat gaacttcatg atgaatgctt cctgacgttc gagaggtaat ccaatcccgc
     4081 acttcgcaaa atattttatc acccaacgat tcctcttcca tttgcaaaaa aaacaaaatg
     4141 agccatttca attcaatgct gtctttatca ggcaaccgga tagaagtgct tagagattct
     4201 ttctgaaata aaattttttg ggtccttaag gccatctcaa cttctttatc agtataaaat
     4261 ttctctaaat gattcccaat ataatgtctg aattgcgatt gaatttcata aattccatga
     4321 catcctctga taacaattaa agcagagtct cctgtttcat gaatctgctt aattattttt
     4381 ggcaaatcag gggaccaata caaacactgc gatgcaaaaa tccaatcaaa atggtctgtg
     4441 cacacatcaa aataatcttc tgcagttcca gcaaaagtat tcgtttggac tggaattgga
     4501 aaatctgctt ttgcatattc tttaattgct tgcaaactag gatccactcc ggtaataact
     4561 aacttttccg gtaaacgctt tgcgtaagca ttcactatat ttttcatcaa tgcgccatca
     4621 tggcaaccca aatccaatat gttcgcagta tgagagggag gatgaaatcg tttatccaac
     4681 agctttacca ggattgactt ctcgcttgca ctagaaaaat aggttttaaa aaactggcgc
     4741 atatcataca tagacatgta gtgattcctc aatcgcttat caaatttaat ttttaatata
     4801 aatacacttt gttaggaggg tataaccaat tagtttccgg ataatcgact tcatacgttt
     4861 caataaactg aaacgacaat gcttttcttg agtttttaga cgtattcatt gggctgcagt
     4921 gcacaaaatt accgtgaaat aacaaagcat ctccggcttt cacttccaag gcagtataaa
     4981 attcgcgctc tgtcataaaa tcaggaatat gtaactgatg aacttgctca aagtgacgcg
     5041 tttttgtctc tcggtccact tttgataccc atttcaacgg ccaatgatta cttcctaaaa
     5101 ccccatacat acaggcattc tcaattaacg cgtcttccag ggcaacccac agaacaacga
     5161 cactttgtgg ttcagtaaag gcaaatgttg actcctgatg aggtcttacc tcactgccta
     5221 ttccattagg atatttggga atatagacac tgagatggca gattggcttc ttaaatccaa
     5281 tcccttttag caaatccaga agtacagggc tatcataaac tgctcgctgc atcatcggat
     5341 acctattgat gagatgcata ccatggccaa ttcgattgac tacccgcata ttatcaatca
     5401 cttcataaaa tacatgtgcc ttattacttg aggcttgaaa ataaggttct gtgacatatt
     5461 ctctatccac tgactcaggt ttcaaaggat ctttggaata aaaatgaatg attttattat
     5521 tccaatacct ggcaatatcc tgctcagcat ccttttgcat tatctcaagt tcattaagca
     5581 agcttattcg gtttgcctga ttgagatatc cattaagtcc aataatgcca ttttgttcat
     5641 agtctttcag aacccggttc aaattatctt ggatttcatt agatgtaaaa attgttaatt
     5701 ttttttcatt caataaattg tccataacaa ctccaaacca atgtcatggc taaatttgat
     5761 tgtaaaatgc caggaaataa attaccgtct gcttgcaggc ttaatatata tggggaatct
     5821 ggtttatctg acacggttat gacctcttta ataaaaaata aagaagccat caccaaaaac
     5881 ctaatcgcgt gttcaatcag gatgactaaa agaatactga acactaagga ttttcttgta
     5941 ggaaaattta caagtattta ttatgggtgt caacacaaaa ccaagacatg cgtttgccga
     6001 accagaatgg tatggttaaa cagcaaaaaa cattttattt aaacaatgta tttaatttct
     6061 gatatcatcc gggggttggt atatcagggt ttggctcatc attctcagga gatgaatttt
     6121 ctattttagt atctttaggc cctaaattat ttcgctgggc atccgcttct tcaacagtat
     6181 caattggact gcctacctgt gtgtccagat aaagcttttt aattctatcc gccgttgaca
     6241 ctggtgcttg attgttatct actttattat caccttctga tagacgttta atttcatgcc
     6301 atttggattt tgggggttga tctgccattg cgtttctcaa ctagagtgat ttagtacaat
     6361 tatagatcac aatgtttgta gatcacaaca ttaagattag gacttctaaa tacgttgatg
     6421 caccatttag atctaatctg agccaaaaaa tccaaattcg ttacacccat ttatccttgt
     6481 ctgcccatga taatttatta attttgagct aactttaaaa tttggttgat aaattcactt
     6541 tttgcatcag tgtattgctc cctatcatat ttgtgttcct gagccagttt gatttttagt
     6601 tgctgatatt tttcagctgc ttctggatga gagagtaaat agtctctgaa aaatgttttt
     6661 cctttccaat gcctggatga tgcttcgacg atatgaacat ggtgcgttcg tccattacca
     6721 taggggggca tgccttttac aaaaaacatt cgttcaggat ctggattatc ttcccaatat
     6781 tcataatcta atttctgtaa tatcggcaca gcaataatct tcatttcttc taatgacctc
     6841 actgcaatct gaatatcaat aatgggtttt gatgccatgc caggtattgc tgtactgcct
     6901 acatgctgga tatcaataac actatttgcg ggaaatgagg cgcgtaactt caccatttct
     6961 gccttggcta gaagcggcca ctctgtattg tatgcaacaa tatcgatatg atctttttca
     7021 agtacctcat tattatcctt gataaaatct tcataagtca tggcccaatg ctcatgacct
     7081 tgccacacgt cattcactct caaatatcgt ggggaaaatc cttcatagcg aaaaccattt
     7141 ttcttcacaa gccagattga acgggtattc tcaggttgta tattcgcttc taagcgatgc
     7201 aaccccatgt ccttaaaaac tttggttaat attaatttca aaccagtact catatatcct
     7261 ttacccgcat aagctgcaac aacataaaag cccaaatacg cattctgaaa gtaaccacgt
     7321 actatttcac tgatattaaa gacacccgct aagttattgt cagaaagaag cagatagctt
     7381 ttttggtttg gtttttgata gcgagaaaaa tactcatcaa actcttcagg tattatcggt
     7441 gccttaaccc aaggatgatg taatgcttga ctactttgca tagcacaaag aaacatctct
     7501 ttatcttcag atgttatctc acgaataatt acctcgttca ttggattctt gactccagaa
     7561 tgtttcacga accataaact aattggccag attcttaagg aaaaatcaaa atgtttcatt
     7621 tggattagtt tagagtcatc ggattttttt cttaaaaata cttaagagca attgatttgg
     7681 ctcaatatag cctatctatc gctctttcct gttgaaggtt aacttttaag aaaaaatatc
     7741 cgtaattatg agcaaaccta tttcacagag atgatatcaa taccacctaa ataaggcttc
     7801 aaagcatccg gtatatgaat gtttccatgc tcatcttgat aattctccat aatggcaact
     7861 aaagttcttc caacagctaa acctgatcca tttagagtgt ggactaattg aatctcatta
     7921 gtatccggat tgcggaaacg cgctttcatt cggcgtgcct gaaatgcctc catattggaa
     7981 caagaggata tttctcgata agtattctgg ctaggcaacc aaacctcaag atcataggtt
     8041 ttggctgaac cggcacctat atccccggta cacaaagcaa ccactcggta aggcaagttc
     8101 aaacgctgta aaataatttc agcatgctga gtaagttgct ctaaagcatt ataagaatct
     8161 tccggtttgg taatccagac cagttcaact ttctcaaatt gatgctgtct aatcattccc
     8221 tttgtgtctt taccataaga acccgcctca ctacgaaaac atggggaatg gcaaacataa
     8281 cgaataggta attgctcagc agacaatatc atttccctta ctgtattggt cactggaatt
     8341 tctgaagtag acgtcaagta gtacccatta tctcctgtta atttaaataa atcagcctca
     8401 aactttggta actgcccagt ccctagtaag ctatccgcat taacaatata aggtacatat
     8461 atttcctggt aaccatgttg ctgaatatgt atatccagca taaattgaat taaagcccta
     8521 tgtaatcggg ccagatgccc tttcatgacg acaaaacggc tgcccgtaat tttagctgca
     8581 agcgcaaaat ccatttgccc tagcgcttca cccaattcat catgtgactt tacagggaaa
     8641 gaaaaagcag gtacgtcgcc ccattttctg atttcctgat tatccaattc atctttacca
     8701 acaggtactg attcatgagg aatattaggt aatgataggc taattacctc aatttgttta
     8761 agaacctcgt ccagttcagt cttttgctgc tccagtatag cgccaagttt attcacttct
     8821 tcgcgcatag gccctatgtt ttcacctcga gatttagctt caccgatggc tttcgaacgc
     8881 aaatttcgtt cgttctgtaa tgattgcgta cttacttgca aagccttacg cttttcttcc
     8941 aactgactga aagtgaccgc atcaaattga aatcctcgtt tcagcaattg ggttgctaca
     9001 tattgaggat tctctcgaag taattgatta tctaacataa gccaacactc taaaaattat
     9061 taattggagc cctgatgtcc taataataca tatttagcaa ctaatgttcc aatgaagacc
     9121 atggacaatg agccaacatt attaaccagt atattggtca ttaatttaaa ccaatatcct
     9181 tgctcaaaca taaataaaga ttctgcagca aaactcgaaa aggtagtaaa agctcctaaa
     9241 aatcctgtaa aaaggaataa acgaaacgac tcctcggcgc taaaacgacc tactaataca
     9301 ataagaaaaa aaccagctag aaaagaacct agtgtgttca ctaaaagagt accataagga
     9361 aatttaatcc cccaagcatt ttgcgccatt attgtaacca aataacgtga cattgcacct
     9421 aaagagcctc cgatagctac agccaaatag ggagcaacaa ccattcgtta cctcacaatg
     9481 cctcttgtgg attgattcaa agcatcaatc atagggataa tttcaggaca ttcattttga
     9541 atcaactcta attctgaaac tgcctgttga acggttaacc ctttacgaaa gataatttta
     9601 tatgcacgtc gcaaacaatc aatcgcagca gaagaaaaac ctctccttct taaaccaacc
     9661 gtgttgattc cacaagcaga agtggtatga cctgcaatca taacataggg taatacgtct
     9721 ttagtgacat aggtagctcg ggctatgaat gcgtaggctc ctacctgaca aaattggtga
     9781 actgcagcat acgggccgat aattgcgtaa tcattaattg tgacatgacc tgataaggct
     9841 gcataattca ccataatgat atgattgcct accatacaat catggccaat atgtgaatag
     9901 gccattaaat aattgctatc gccaatgcga gtgacacctc cacctttgac agtacctcgg
     9961 ctaatcatgc aatattctct gattacatta ttatcgccga tttcaagacg agttggctcg
    10021 cccttgtaag tgatatcttg tggctcatct cctacggagg caaattgaaa gatcttattg
    10081 tttttaccaa ttacagtagg tccttcaatt actacatgcg gccctatcca ggtattttca
    10141 ccaatctcaa catcagcgcc tatcactgtt ccagggccta ttgacactcc acttgccagc
    10201 ttcgccgatg ggtgaatcat tgctctttca tctatcactt tttaatttcc tttgctgcgc
    10261 ttaataagtc tgcggaacaa gccaatttat caccaatata agcttctccg tgcatacgcc
    10321 aaaaatctct tttttgtccg gccaatctca cctctaatcg caattggtcc ccaggagtca
    10381 ctacttgctt gaaccgagca ttgtcaatac cggcaaaata atgcaaaaac tcatgtcctt
    10441 ctttgggttg acgagataaa ctggctaaaa tggcacaagc ctgagctaaa gcctcaagca
    10501 ttaatactcc aggcataata ggatttcctg gaaaatgtcc ggtaaagaag ttctcattaa
    10561 tagtcacatt cttaattgca atcaaatatt ccatgacttt gtaatctatc actctatcaa
    10621 ccagaataaa tggatagcgg tgtggtaaca aagtaaaaat ttgatttata tctatcgatt
    10681 cgttcatacc ctagttctca ttaatcgcct attgcattac aaaatggctc attatcttgg
    10741 tttagctcat tctaatcaat
//
LOCUS       DACVWI010000104        10760 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.104, whole genome shotgun sequence.
ACCESSION   DACVWI010000104 DACVWI010000000
VERSION     DACVWI010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10760
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.104"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(126..1394)
                     /locus_tag="JBH85_09645"
     CDS             complement(126..1394)
                     /locus_tag="JBH85_09645"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HAU0946464.1"
                     /translation="MHIHKIQAREILDSRGNPTIEADVTLTTGIIGRASVPSGASTGS
                     REACELRDNDPKRYAGKGVQKAVKHVNNEINQALQGLSVEDQENLDRILCQLDNTENK
                     SHLGANAILATSLACARARALSLNQPLYMTLNQGDMMTMPVPMMNILNGGAHADNNVD
                     IQEFMIMPIGAPDFPVALQMGTEIFHVLKSVLKKQGLNTAVGDEGGFAPNIQSNRQAL
                     DLLSEAIEKAGFRLGEDIVFALDVAASELFNEGFYHMYSENQKFDSHQLIEYYANLIS
                     SYPIVSIEDGLDEKDWSGWKQLTTHLGNKVQLVGDDLFVTNPKILREGIAQGIANAIL
                     IKVNQIGTLSETRQAIKLAYDNGYRCVMSHRSGETEDTFIADLAVASGCGQIKTGSLC
                     RTDRTAKYNQLLRINELASLPYAGKNILKR"
     gene            complement(1426..2028)
                     /gene="maf"
                     /locus_tag="JBH85_09650"
     CDS             complement(1426..2028)
                     /gene="maf"
                     /locus_tag="JBH85_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation protein Maf"
                     /protein_id="HAU0946465.1"
                     /translation="MSKFLQQKPIILASSSTIRHKLMKSLGLDFLVVPSNCNEEEIKT
                     RHNSVELVELGITLAKIKALDVSQHYPEHYIIAADQLCVADKRVFNKPLNHQTAVSHL
                     RELSGKQHQQIACLCIVKESKILWQYHETATLTLHHLSEKTIEAYLQAEKPYQSCGAY
                     QYEGLGKWLFKEVQGSEDTILGLPLMPLVNALVNLKVVGI"
     gene            complement(2021..2779)
                     /locus_tag="JBH85_09655"
     CDS             complement(2021..2779)
                     /locus_tag="JBH85_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter"
                     /protein_id="HAU0946466.1"
                     /translation="MLSATSLKIIFAVSIFIVILIAGWYPFKKRLKDDKHIDFPIGET
                     LATGVFLGAALLHMLPESNTLFKEMGYNYPFAFIITGVVFLIFLWFEHLGKELYHHHD
                     AEHPAFAILAWAMLSVHSLMLGAALGFTQYNSMIIMLFLAIITHKWAESLAIAIQLNK
                     SSMSTRKSMVFFFFFSLMTPLGIYFGWYFGHGVETNSLFDPILIAASAGTFLYLGTLH
                     GLERCVMVERCCNLSDFSFVIIGFLLMASVAIYV"
     gene            complement(2895..4058)
                     /locus_tag="JBH85_09660"
     CDS             complement(2895..4058)
                     /locus_tag="JBH85_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HAU0946467.1"
                     /translation="MIEKGTTMYPHDRYWQAKKVTLIGAFINALLGVVKMIGGFLYHS
                     HALIADGVHSISDLITDVTVVFASKYGSVSADDSHPYGHQRIETAATLLLSLLLILAG
                     CGIAWDALDELLKSDHTMPNWLSIPIVCFSIIANEALFHYTRHVGKKISSQLITANAW
                     HHRSDAASSIVVLIGLIGSLAGLVYLDAIAAVIVSLMIIKMGWSYGWNSVKELVDTAV
                     DAELFSQIERVIQSIDGVKRIHQLRSRFMGSDVLIDVHILVSPKISVSEGHYIAQHVH
                     HTLVKEIDCVKDVIVHVDPEDDEISCPSLHLPNRAILQEKFFNDIRHDFPQILFWNIH
                     YLNGKMSLDIFCSNDFNQWKKLHNRVISTLKSQIDIKEVRLFGLHEEMHHPSN"
     gene            complement(4551..6623)
                     /gene="recG"
                     /locus_tag="JBH85_09665"
     CDS             complement(4551..6623)
                     /gene="recG"
                     /locus_tag="JBH85_09665"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HAU0946468.1"
                     /translation="MLSNSCEYLTGVGPTIAAKLAKCGIFTIQDLLFHLPYKYQDRTR
                     ITPIQDLRSNEWCVIAGHVYKTEIKYGKRMMLNCYVEDKTGVVKLRFFHFNKQQIQAL
                     NNSTMIRAFGEVRGFNNHLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQTRLRQ
                     LVKIALEQSEHELHQLEWMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPA
                     LKRLIFDELLAQQLSMQFARQSRSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFK
                     EISFDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAFMAPTDLLSEQHTNS
                     LSKWLEPIGINVLRLSGKMKTTERKNALAALQDNSCQLIVGTHALFQEQVEFARLGLV
                     IIDEQHRFGVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVIDELP
                     PGRMPITTAVLNQDKRELIIERLQAAIANGKQAYWVCTLIEESEKLQCMAATDTSKKL
                     QEQLSFARVGLVHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNASLMIIEN
                     AERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTTDGFLISEKDL
                     ELRGSGEILGTRQTGFRQFKIANLQRDKTLFAILRPIAKQLVLEKTAIARQITQRWLG
                     NFEQFLQS"
     gene            6544..6765
                     /locus_tag="JBH85_09670"
     CDS             6544..6765
                     /locus_tag="JBH85_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946469.1"
                     /translation="MKIPHLASFAAMVGPTPVKYSQELLSTVLFKIKNLIITGKYIRC
                     DLSHHSGNFAQIITKLLVACEYLFIKDGV"
     gene            6692..7828
                     /locus_tag="JBH85_09675"
     CDS             6692..7828
                     /locus_tag="JBH85_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAU0946470.1"
                     /translation="MAILPKSLLSYLLLASIYSSKMECNWMNRIITFTAGLILVWITG
                     YLLIAGRGLLIPIVISIFVWHLLNTINSGVQKIPFIGTHLPSWIRMILSLFVVVCLVM
                     VLINIITNNVSDVIAASPRYQENLLHIFNSLDQRFHVKGIFDFDSLIQGLSIQSMLVN
                     IYGVFTTITSSAVLISLYVVFLFVEQHYFTQKMDAFFPQAEHRKLVKNIISHITKDTQ
                     TYLGIKTLLSLLTATLSWFIMKWVGLDFAEFWALLIFFLNYIPNIGAIVATAFPAALA
                     LIQFESWWPFLEVTSGIVAIQFFVGNFLEPRLLGKSLNLSPLVILFALALWGAIWGVL
                     GMFLSVPITVMMMIIFAHFDVTRPIAILLSQDGYIHKSYESLEN"
     gene            7932..9701
                     /locus_tag="JBH85_09680"
     CDS             7932..9701
                     /locus_tag="JBH85_09680"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HAU0946471.1"
                     /translation="MRSMKAIIEYLLKQALINLQQSGEMPIDLEIEIKVENAKDPAHG
                     DYATNLALVLAKPCRQAPKVLAERLVAVIPVDPSVEKIEIAGAGFINFFMRSTARSLI
                     ISEILNKGKEFGRGNLGQSQKVLIEFVSANPTGPLHVGHGRGAAFGATLGNVLKAAGY
                     DVTLEYYVNDAGRQMNILAVSVWLRYLELAGEPIVFPANGYKGQYVYEIAQEIWSEQG
                     NQFVHPWISVVENLPADEPEGGDKETYIDAIIARAQSLLGKDGFANFHQHALKTVLDD
                     IKDDLQAFGVRFDSWFSEQSLFEDGSIEKGIQALKDRGHTYEREGALWFRATDFGDEK
                     DRVLVRANGQTTYFASDVAYHWNKYDRGFDRVIDIFGADHHGYVTRIKTAVKALGHDE
                     SALDVILVQFAILYRGGDRVQMSTRSGSFVTLRELREEVGNDAARYFYVARKPEQHMD
                     FDLDLAKSESSDNPVYYIQYAHARICSVLRQLKERGLKWDKDMGLKNLDLLEQQHEAT
                     LISLIARYPEVIQSAAASCEPHQLAYYLRELANGLHSYYNAIQLLCEQEQLRCARLCL
                     LESVRQVLNNGLAILGVSAPESM"
     gene            9698..10396
                     /locus_tag="JBH85_09685"
     CDS             9698..10396
                     /locus_tag="JBH85_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HAU0946472.1"
                     /translation="MMAKDYGNRRAARRNRGPHQFLVIIVTFLFGYITASFLDVQTIS
                     QWVNTQVLAQHDDEKAPTKVAQEHKQVPPKPKFEFYTLLANERGPASQASSQQNTDNH
                     AADKTSTPIQKTANTVTAAVNNSVKSTIANPTPQTPVKVAEAKPTTMQQPNKGAYLVQ
                     VASFKARQDAEQMKGMLILKGFDVSVVPVTQAQGNWFRVVVGPYPNKALAQKAQMNLA
                     KTEHLNGMVRSVGG"
     gene            complement(10436..10759)
                     /gene="folB"
                     /locus_tag="JBH85_09690"
     CDS             complement(10436..10759)
                     /gene="folB"
                     /locus_tag="JBH85_09690"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010654434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HAU0946473.1"
                     /translation="MTALSVETKIGVYGWEQRINQRLLIDISIPFDFKDCKDNLSNTL
                     DYAALCQTVTQFVESTSFQLIETVAEQIAQLIKQKYPVTKVSVAVTKPHAVKNAAGIQ
                     VVVNR"
BASE COUNT         3154 a         1997 c         2232 g         3377 t
ORIGIN      
        1 gaactgatga ttttaaattg tattttattt atattacctt tgatttaaat tagagctgat
       61 gccaagtttt attcagcact caacatcacc ccaacttaaa cattaataat gctgaaagct
      121 tgaactcatc tctttagaat gttttttcca gcatagggta aagacgccaa ttcattgatt
      181 cttagtagtt gattatattt cgcagtcctg tctgttcgac acaaagatcc ggtttttatt
      241 tggccacaac cactggctac tgcaagatca gcaatgaagg tatcttctgt ttctcctgaa
      301 cgatgggaca tgacacatcg gtatccattg tcgtatgcga gctttatagc ttgcctggtt
      361 tcgcttaaag tacctatttg attgacttta attaatatgg cattagcaat tccctgagca
      421 attccttctc gcagaatttt gggattagtt acaaataaat catctccgac gagctgaact
      481 ttatttccca aatgggtggt taattgcttc catcctgacc agtctttttc gtccagtcca
      541 tcttcaatac tgactatggg ataactggaa ataagatttg catagtattc tatgagttga
      601 tgagaatcaa atttttgatt ttcagaatac atatgataaa agccctcatt aaaaagctca
      661 gaagccgcaa catccagggc aaatacaatg tcttccccta atcgaaagcc tgctttttca
      721 attgcttcgc taaggagatc cagcgcttgg cgattggatt gaatattagg tgcaaaacca
      781 ccttcatcac caacagcggt atttaatcct tgctttttta acacagattt cagtacatga
      841 aaaatttcag ttcccatttg caatgcaact ggaaaatcag gagcgccgat tggcatgatc
      901 ataaattctt gaatatccac attattatca gcatgagcgc ctccattcag aatattcatc
      961 ataggaacag gcatggtcat catgtcaccc tgattaaggg tcatatacaa tggctgatta
     1021 agagacaatg ctcttgctct ggcacatgcc agagaagtag ccaggatagc attagctccc
     1081 agatgggatt tgttttctgt attatccaat tggcataaaa tgcgatccaa gttctcctga
     1141 tcctcaaccg acaatccttg taatgcctga tttatctcgt tattaacgtg tttaactgct
     1201 ttttgtacac ccttgccagc gtatcgtttt ggatcattgt ctctaagttc acaggcttcc
     1261 ctgcttcctg tggaagcacc tgaaggaacg ctggctcttc caataatgcc agttgtgaga
     1321 gtaacgtctg cctcaatagt tggattaccg cgagaatcta atatttcacg tgcttgaatt
     1381 ttatgtatgt gcatgatctt tcctaatctt tttatattta ttaacttaaa tacctaccac
     1441 cttaaggttt acaagcgcat taactaatgg cattagtggc aaaccaagaa tagtatcctc
     1501 gcttccttgt acttccttaa ataaccactt gcctaggcct tcatattgat aagcaccaca
     1561 gctctgataa ggtttttccg cttgtaaata ggcttcaatt gttttttcac ttagatgatg
     1621 cagtgtcagt gtagccgttt catggtattg ccaaagtatt ttgctctctt taacaatgca
     1681 caggcaagca atttgttgat gttgcttccc gcttaactct ctcaaatggc ttacagctgt
     1741 ttgatgattc agtggtttgt taaatactct tttatcagcg acgcataatt gatctgctgc
     1801 aatgatatag tgctctggat aatgttggct tacatccaac gctttaattt tagccagggt
     1861 aatccctaac tcaactagtt cgacggagtt atgccttgtt ttaatttctt cttcgttaca
     1921 attcgatggt acaaccagga aatccaagcc aagtgatttc atgagtttat gtcttatagt
     1981 cgaagatgag gcgagaataa tcggtttttg ttgtaaaaat ttagacatag atggccaccg
     2041 atgccatgag taaaaagcct atgattacaa agctgaaatc acttaaatta cagcaacgct
     2101 ctaccatgac acagcgctct agtccatgta aagttcccaa atagagaaat gtaccggcag
     2161 atgccgcgat taatataggg tcgaataaag agttagtttc tactccatga ccaaaatacc
     2221 aaccaaaata aatgcctaag ggtgtcataa ggctaaaaaa gaaaaaaaat accatacttt
     2281 ttcgagtgct catcgagctt ttatttaatt gaattgctat agccaaactt tccgcccact
     2341 tatgagtgat gatcgctaaa aatagcataa tgatcatgga attgtattgg gtaaaaccta
     2401 aagcagctcc cagcataagc gagtggacag aaagcatggc ccaggcgagt attgcgaaag
     2461 caggatgttc tgcatcatga tggtggtata gttcctttcc taaatgttca aaccacaaga
     2521 aaataaggaa tactactccg gtaataataa acgcaaatgg atagttataa cccatttctt
     2581 taaataaggt gtttgattca ggtaacatgt gaaggagtgc tgcacccaga aaaacacctg
     2641 tagccaaagt ttcacctatg ggaaaatcaa tgtgtttatc gtctttaagt cgctttttaa
     2701 atgggtacca gcctgcaatg agaatgacta taaatatcga aacagcaaaa atgattttta
     2761 aactggttgc ggacaacatg aagtcttcct actttaaaat gcgtatatat tatcctgaaa
     2821 tgactaatcg aatctacagt gcacagcagt attacattgt taaaatttag caattcttgc
     2881 atgccttctg gatattagtt tgatggatga tgcatttcct catgcaagcc aaagaggcgc
     2941 acttccttta tatcgatttg tgatttcagg gttgagatta ctcgattatg caattttttc
     3001 cattgattaa aatcatttga gcaaaaaata tccaaactca tttttccatt taaataatgt
     3061 atattccaaa ataaaatctg gggaaaatca tggcgaatgt cattaaaaaa tttttcctgg
     3121 agtattgccc tgtttggtaa atgcaaggat ggacatgaaa tttcatcgtc ttcagggtca
     3181 acatggacaa tcacatcttt gacgcaatca atttctttta ccagagtatg atgcacatgt
     3241 tgagcgatat agtgcccctc ggaaacggat attttgggtg aaaccagaat atggacatca
     3301 ataagcacat cactacccat aaaccggctt ctcaattggt gaatacgctt tactccatca
     3361 atgctttgta taactcgttc aatttgagaa aataattctg cgtcaacagc tgtgtctacc
     3421 aactctttga cactgttcca gccatagctc caccccattt ttataatcat caggcttacg
     3481 atgacggcgg caatggcatc caggtaaaca agccctgcca agctgccaat taatccaatc
     3541 agcacgacta tggatgaagc agcatctgat cgatgatgcc aggcattggc ggtgattaat
     3601 tgggagctaa ttttttttcc tacatggcgg gtgtagtgaa ataatgcttc gtttgcaatg
     3661 attgagaagc acactatagg aatagataac cagtttggca tggtatggtc tgatttaagc
     3721 aattcgtcaa gtgcatccca ggcaatccca cagcctgcta ggattagtaa aagggaaagc
     3781 aataaagttg ctgccgtttc aattctttga tggccatatg gatgagagtc atcagcgcta
     3841 acgcttccat attttgaagc aaatacaacc gtcacatcag taattaaatc agaaatggag
     3901 tggactccat ccgcgatgag agcatgagaa tgatataaaa aaccaccaat cattttgaca
     3961 acaccgagta aggcattaat aaaagcaccg ataagggtca cttttttggc ttgccaatac
     4021 ctgtcatggg ggtacattgt tgttcctttt tcaatcacaa aaataattta gatttttgta
     4081 aataaaaatt agaagggaaa ctataccatg ttatagcatg agttcctatt tatctcgtgc
     4141 tgtcagttat agtcgactaa atgtattaat aatttctttt tggtttttac tcgattacgc
     4201 taggagaagt taaaaaaata attgcagatg ttacccaaaa gcaaattgga aagttctgaa
     4261 tcagttagaa aatagactga ttttacaagg tgttttgcat tctgtgcaca ggattatcca
     4321 cagattttgt ggataaatat atctgaggga attaaattaa aaaagccagg taacccttac
     4381 atggaaaggg ctatagaaat ttcaatagta aaattagcaa gagttttgtg caattgattt
     4441 ttgaagttat ccacagggat aagacggaat gaatgttact tgtggaccgc ttatgttagc
     4501 aaagaaaaaa ataaaaaaca gtcttgactt caataatttt aattattttt ttaactttgc
     4561 aaaaattgtt caaaattgcc cagccatcgt tgtgtaattt gtctggcgat tgctgttttt
     4621 tccagcacca gttgttttgc aattggacgt aaaatagcga agagggtttt atcgcgttgt
     4681 aagttagcta ttttaaattg tctaaagcca gtctgtctgg ttcctaatat ttctcctgag
     4741 cctcttaact ccagatcctt ttcggagatt agaaaaccgt ctgttgttga acgcatgatc
     4801 ttgagacgtt cagcaccttg ttgtgataga ggagattgat aaagtaatag acaatgagat
     4861 tgattattac ctctgcccac gcgccctcgt aattgatgta actgcgacaa accaagtcgc
     4921 tctgcatttt caatgatcat taaactggca ttaggaacat ctacaccaac ttcaataaca
     4981 gtagttgcca ccaataaatc aatctcgcct tgtttaaagg ctgccatagt agcttctttt
     5041 tcaagtgctt tcattctccc atgaacaaga ccaacacgcg cgaaagagag ctgttcttgt
     5101 agtttttttg aggtatctgt tgctgccatg cattgtaatt tttcagattc ttctataagg
     5161 gtacagaccc agtaagcttg tttgccgttg gcgattgccg cttgcaaacg ttcgataatg
     5221 agttcacgct tatcctggtt taatactgct gttgtaattg gcatacggcc aggcggtagt
     5281 tcatcgatga ccgatatatc caaatgggca aaatgggaca ttgacagggt tcttggaata
     5341 ggggtggctg tcattaataa ttgatgaggg attaattggt ttaattgccc tttttgttgc
     5401 agaaggagcc gttgttctac tccaaatcgg tgttgttcgt caataatgac caaacccaaa
     5461 cgagcgaatt cgacttgctc ctgaaataag gcatgagttc caacaatgag ctgacagcta
     5521 ttgtcctgca gggctgcaag cgcatttttt cgttctgtgg ttttcatttt accgctcagt
     5581 cttaatacat taataccgat aggttctaac catttactaa ggctatttgt atgttgttca
     5641 cttaataaat cggttggtgc cataaaagca acctgaaatc cttgtgaaat ggcttgaagg
     5701 gcggctagtg ccgcgataat ggttttaccc gccccaacat ctccttgcag caaacgaagc
     5761 atgggtttgc tttgagttaa atcaaagctg atttctttaa aaacccgttg ttgtgcgttt
     5821 gtaagactga atggcaatga ttcgataaaa cgtttatgaa ttgcattatc gaaaagtata
     5881 gcgggagcct ggagcttgct gcgtgactgc cttgcaaatt gcatactgag ctgttgtgcc
     5941 agtaattcat caaatattaa tcgcttgaga gcaggatgtt cgccagcttc gaggttggag
     6001 agggagatat ctggcggagg gttatgtagt aatttaatgg cttcgcccaa atcataaaaa
     6061 ttgttttcct gtaattgttt ttcactcatc cattccaatt gatgaagttc gtgttcagat
     6121 tgttccaggg ctattttaac taactgcctt aatcgggttt gagtcaagcc ttgagtcgat
     6181 ggataaattg gcgtaagagt ttcttccacg tggaaatctg attcttgatc aattaattga
     6241 tattctggat gaatcatctc caagtggttg ttaaatccgc ggacttcgcc aaaagctcga
     6301 atcatggtgc tattattcaa agcctggatt tgctgcttgt tgaaatgaaa aaaacgaagc
     6361 ttcactactc ctgttttatc ttccacataa caattcaaca tcatcctttt gccgtatttt
     6421 atttcagttt tgtatacatg ccccgcgata acgcaccatt cattcgagcg caaatcctga
     6481 attggtgtta tcctggttct gtcctggtat ttataaggca ggtggaaaag caagtcttgt
     6541 atcgtgaaaa tcccacattt agcaagtttt gctgcaatgg ttgggccgac gccagttaaa
     6601 tattcacaag agttactcag cacggtatta tttaagatta aaaatttaat aataacagga
     6661 aaatatattc gttgcgactt gagtcatcat tctggcaatt ttgcccaaat cattactaag
     6721 ttacttgttg cttgcgagta tctattcatc aaagatggag tgtaattgga tgaatcgtat
     6781 tataacgttc acagcgggtt tgatactggt ttggataaca ggttatttat taatcgcagg
     6841 aagaggacta ttaattccaa ttgttatatc catttttgtc tggcacctgt tgaataccat
     6901 taatagcggt gttcagaaaa ttcctttcat tggcacacat ctcccatcct ggataaggat
     6961 gattttatct ttgtttgttg ttgtttgcct cgtaatggtt cttattaaca tcattaccaa
     7021 taatgtcagt gatgtgatag ccgcttctcc caggtatcag gaaaatttac tgcacatatt
     7081 taacagcctg gatcaacgat ttcatgttaa gggtattttt gatttcgaca gtttaattca
     7141 agggttaagc attcagagta tgcttgttaa tatttatggg gtttttacga caataaccag
     7201 ttccgctgta ctgatttcct tatatgttgt gtttctgttt gtcgagcagc attattttac
     7261 tcaaaagatg gatgcctttt tccctcaggc agagcacagg aagctggtta aaaacattat
     7321 ctcccatatt acaaaagata ctcaaactta tctgggtatt aaaactttgt tgagcctgct
     7381 cactgccacg ttgagttggt ttattatgaa atgggttgga ttggattttg ccgagttttg
     7441 ggcattatta attttctttt taaattatat ccccaatata ggagctattg tagcaacagc
     7501 ttttccagct gcgcttgctt tgatccaatt tgaaagctgg tggccgtttt tggaagtgac
     7561 ttccgggata gtggctatac agtttttcgt ggggaatttt ctagagcctc gtctattagg
     7621 taaatcacta aacttaagtc ctttagtgat attgtttgcc ttagcgctat ggggtgccat
     7681 ttggggggta ctaggcatgt ttttgtctgt gcctatcact gtaatgatga tgattatttt
     7741 tgcgcacttt gatgtgacaa gacccatagc aattctgctg tctcaagatg gatatattca
     7801 caaatcctat gaatctcttg aaaattaatg agctattgct gtttctattg ttgtaatgat
     7861 ggtgctgcgg ggttgagagc ctttccatat ggtatgaaaa agagcataat atcggtattt
     7921 ttgacggata aatgagaagt atgaaagcta taatcgaata tcttttgaaa caggcattaa
     7981 ttaatctgca acaatcaggc gaaatgccaa ttgatttgga gattgaaata aaagttgaga
     8041 atgccaaaga tccagctcat ggtgattatg cgactaattt ggctctggta ttagctaaac
     8101 catgccgaca agcacctaaa gtattagccg agcgattggt tgcagtaatc cccgtagatc
     8161 cgtctgtaga gaaaattgag atagctgggg caggatttat taattttttc atgcgcagca
     8221 cggcacgctc gctcatcatt tctgaaattt tgaataaagg caaggagttt ggccgaggta
     8281 atttaggaca gagccaaaaa gtattgattg aatttgtttc tgccaatcca acagggcctt
     8341 tacatgtagg acatggaaga ggggctgctt tcggagcaac tttgggtaat gttttaaaag
     8401 ccgctggtta cgatgtgact ttggaatatt atgtcaatga tgcaggcagg caaatgaata
     8461 ttctcgctgt gagtgtgtgg ctgcgctacc tggaattggc aggtgagcca attgtttttc
     8521 cggcgaatgg ctataaaggt caatatgttt atgagattgc acaagagatt tggtcagagc
     8581 agggtaatca attcgtgcat ccatggattt cggtagtaga aaatttacct gctgatgaac
     8641 ccgaaggtgg agataaagag acttatatcg atgcgatcat cgcgcgagcg caatccttac
     8701 tgggcaagga tgggtttgct aatttccatc aacatgcttt aaaaacggta ttggatgata
     8761 taaaagatga tttgcaggcg tttggtgttc gttttgacag ttggttttct gagcaatcgt
     8821 tatttgaaga tggttctatt gagaaaggta ttcaggcctt gaaagataga ggccacactt
     8881 atgaaagaga aggtgcttta tggtttaggg caactgattt tggtgatgaa aaagatagag
     8941 tattagtccg ggctaatggg caaacgacat atttcgcttc tgatgtagct tatcactgga
     9001 ataaatatga tagaggtttt gatcgagtaa ttgatatttt tggtgctgat catcatggtt
     9061 atgtcacgag aatcaaaaca gctgttaagg cattaggaca tgatgaaagt gcattggatg
     9121 tcattttggt gcagtttgcc attctgtatc gaggtggtga cagggtgcaa atgtctactc
     9181 gcagtggttc atttgttact ttgagagagc taagagaaga agtaggaaat gatgcggctc
     9241 gttattttta tgtggcaaga aaacctgaac aacacatgga ttttgacctg gatctggcaa
     9301 agtccgaatc cagtgacaat cctgtgtatt atattcaata tgcacatgcc cgtatctgta
     9361 gtgtattgag acagttaaaa gaaaggggtt tgaagtggga taaggatatg ggacttaaaa
     9421 accttgattt attggagcaa caacatgagg ccacattaat ttctctgatt gcccgatatc
     9481 ccgaagtcat tcaatctgcc gccgcttctt gcgagccgca tcagcttgct tactatttaa
     9541 gagagctagc caatgggtta cacagttatt ataatgcgat ccagctatta tgtgagcaag
     9601 aacaattgcg atgtgcccgt ttgtgtttgc tggagtcggt tcgacaggtt ttaaataatg
     9661 gtttggctat actaggcgta tcagctcctg agagtatgtg atggcaaaag attatggaaa
     9721 tagacgtgct gcacgtcgca acagaggacc gcaccagttt ttggttatta ttgtgacctt
     9781 tttgtttgga tatataactg cttcgtttct cgatgtacaa acgataagtc aatgggtgaa
     9841 tacacaggtt ttagctcaac atgatgatga aaaagcgcca actaaagtgg cgcaagaaca
     9901 taaacaagtg cctcctaagc ctaaatttga gttttataca ttattagcga atgaaagggg
     9961 gccggcatct caggcatcta gtcagcaaaa tacagacaat catgcggcag ataagacatc
    10021 aactccaata caaaagactg caaatactgt cactgctgct gtaaataact cagtgaaatc
    10081 aacgatagct aatccaacac cgcaaacccc agtgaaggta gcggaggcaa aaccaacaac
    10141 catgcaacaa cctaataaag gagcatattt ggttcaagtc gcatctttta aagcgcgtca
    10201 ggatgcagaa caaatgaaag ggatgctaat ccttaagggt tttgatgtca gcgtggttcc
    10261 agtcacccaa gcacagggaa attggttcag agtagtggtg ggcccttatc caaataaggc
    10321 cttggctcaa aaagctcaaa tgaaccttgc caaaacagag cacctgaacg gcatggtgcg
    10381 cagcgttggc ggataaaggg taatcattta atcaaagaag attgctcctt tcagattatc
    10441 tgtttacaac tacttggatt cccgcagcgt tttttacagc atggggcttt gtaacagcga
    10501 cggaaacctt agtaacaggg tacttttgct tgattaattg tgcaatttgt tccgctaccg
    10561 tttcaattaa ttgaaacgaa gttgactcta caaattgggt tactgtctgg cacaaagcag
    10621 cgtaatccag tgtattggac aaattatcct tgcaatcttt aaagtcaaag ggaatggata
    10681 tatcaattaa taatcgttga ttaatacgct gctcccaccc ataaacacca atttttgttt
    10741 caacactgag agctgtaata
//
LOCUS       DACVWI010000105        10478 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.105, whole genome shotgun sequence.
ACCESSION   DACVWI010000105 DACVWI010000000
VERSION     DACVWI010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10478
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.105"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            91..225
                     /locus_tag="JBH85_09695"
     CDS             91..225
                     /locus_tag="JBH85_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HAU0946474.1"
                     /translation="MKRTFQPSNLKRKRDHGFRLRMSTRAGRLVIKRRRAKGRKRLSA
                     "
     gene            226..570
                     /gene="rnpA"
                     /locus_tag="JBH85_09700"
     CDS             226..570
                     /gene="rnpA"
                     /locus_tag="JBH85_09700"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HAU0946475.1"
                     /translation="MFAFKKAQRLLKKNDFDFVFESAKKITTDDFIFLFRENKLGYAR
                     LGLALSKKMIAKAHDRNRIKRLLRESFRHTNLPAVDIIILARPGLAKKTNLGINTKLN
                     KTWEKLASCYGK"
     gene            537..782
                     /gene="yidD"
                     /locus_tag="JBH85_09705"
     CDS             537..782
                     /gene="yidD"
                     /locus_tag="JBH85_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HAU0946476.1"
                     /translation="MGKISLMLRQIVCLPIKMYQYFISPLITPCCRYYPSCSEYADSA
                     IKHYGVIKGLLMALNRLSRCHPWSKGGYDPLFPNDKN"
     gene            792..2462
                     /gene="yidC"
                     /locus_tag="JBH85_09710"
     CDS             792..2462
                     /gene="yidC"
                     /locus_tag="JBH85_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HAU0946477.1"
                     /translation="MDIRRIVLYMALALIGLSLWNAWQIDYPAKQPVEEKTASQLTSD
                     GHLLPQIIPSNAEQPVTLKAEEKASSGKQLIQVKTDVLDVDIDLKNGDIVKGLLLDYP
                     LSVEDKNKPFPLLQNQASQRYVANSSLFVLDGQTPQSLDFDFTSEKEYYELKPDQNQL
                     IVTLNGKSEDGLDVKKEFVFTKGSYLIEVNYKIANTGNSLWKGYFNTQLLRSSPKEDK
                     SSIFHIGSYTGASFSNPGKNRYQKVSFSDMSKSNLDVDAKGGWIAMQQHYFLSAWVPN
                     ADSENKFYTLATDKDYTIGAVSQPITVKPKEDKIVGSKLYIGPEITSVLKGISPSLDL
                     TVDYGILWFLSSLLFSLMKAIYTVVGNWGWSIVLVTVLIKLAFYRLSATSYKSMASMR
                     KLQPKLQALRERYGDDKAKISQATMELYKQEKVNPLGGCLPILIQIPVFIALYWVLLE
                     SVELRQAPFIFWINDLASADPYHVLPLIMGATMLIQQKLNPAPADPMQAKVMMFLPIL
                     FTGLFWNFPSGLVLYWIVNNTLSILQQWYITRKYSDEKPAKKVVATAK"
     gene            2463..3803
                     /gene="mnmE"
                     /locus_tag="JBH85_09715"
     CDS             2463..3803
                     /gene="mnmE"
                     /locus_tag="JBH85_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HAU0946478.1"
                     /translation="MSIDTIVAIATPPGRGGVGIVRISGPNAYAIALCLNGNKALQPR
                     LATFCSLYKGNNEVLDQGLVLYFKGPHSFTGEDVIEIQAHGSPVVLDLLIKESIAAGA
                     RLARPGEFSERAFLNDKIDLIQAEAIADLIQASSDTAARMALKSLQGDFSKKINQLNE
                     ELIYLRMYVEAAIDFPEEEIDFLNDGNVSQLLQKIIGRLEDIRSQANQGVLLREGLSL
                     VIAGRPNAGKSTLINNLAGRDVAIVTEIAGTTRDIMREHILLDDIPLHIIDTAGLRDS
                     DDLVEKEGIKRAWQELKRADCVLLVVDINNPDQQNSLLNELRLTLPNKIPIITVYNKI
                     DTTKLTAKCDEHTVYLSAKTGEGLDELKKVIKQVVGYQPTEGQFLARRRHLQALDEAK
                     ALLLTGQSQLTNHKAGELLAEDLRLAHQTLCEITGEFTSDDLLGKIFSSFCIGK"
     gene            4099..5937
                     /locus_tag="JBH85_09720"
     CDS             4099..5937
                     /locus_tag="JBH85_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg3000 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946479.1"
                     /translation="MVYSKQSAAFRRDKQQFFAQIPKDSKLDTKIVTIDDRVNTIDYT
                     FLLHHKQDLEAEFTQMFTVLQQQDDENKEIFWLYCYYCASLLEAFHKAYSQNSKQAEY
                     AKIKQKIKDHLNKVNVKEEESGFIQSLYNSFLGGFRNLISSPLHASKIRDYVAYSNLC
                     RIYWTFCRLTLTNGLSVARDLKIIEKLDAILGTHTDVDKIISTLQAPTGVITYFSVGF
                     FLMRLIIDGGMLLRHTFFPTELEKGAENGCEIHQMDYLPGPASLEAYRKSYILVHEDN
                     QEVSLYYIPRSGKAEKLSIKENNKLKDALLKKMNKDTSSLRLNSTEVEEIITHQTGHV
                     PEVTTAWDRFKHEFYKRHCNFANDFVWATINLLTNYNYLFNISAPAAGMITSVFLGFD
                     VCMALYKCNLAKQEYLIKKAQYLQEIEDYNNPEKFKKMTPEQRLLHIEMLNKQLRELE
                     INYKTQEATFYFVAAAAALLMMGFTASMLVSPPILVVGCFFACTLAVAMYLSTGSYSK
                     YEEKSLYLEEAQLTGKNLPVALKEYEAARNDFIFTMVKNTVMPIVLITTFAICWPAAI
                     VLTAMYIGYEIFHAYDQHSEAKAAKQLALAAPSEEKDGYMALATPN"
     gene            complement(5934..6734)
                     /gene="legP"
                     /locus_tag="JBH85_09725"
     CDS             complement(5934..6734)
                     /gene="legP"
                     /locus_tag="JBH85_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegP"
                     /protein_id="HAU0946480.1"
                     /translation="MKTKSWIASLFYSSLCFSSSYAINLHQITITDPIMGSRTITYEQ
                     VGEFAVVEGDILIGKAENLKNQGAVITPKVGGSRWPNGVIPYEIAENLPFINKLAILQ
                     AIDHWQKNTNLEFVELTSKNRYDYRDYISFIPAEGTTCSSYVGRQGGKQEINLAPRCT
                     TMNTVHEIGHALGMWHEQSRSDRNQYIRIVWENIDEEHKFNFDQHLTDGKDFGEYDYG
                     SIMHYGRFAFSKNGQPTIIPLVDGVEIGQRTHLSEKDIAAVKAMYPET"
     gene            7211..9388
                     /locus_tag="JBH85_09730"
     CDS             7211..9388
                     /locus_tag="JBH85_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HAU0946481.1"
                     /translation="MRGRMTRSQLILAILAGLVISIDNMISIVAFSSLIYQGALEIYI
                     PLVINILAISVIIISASYLFMSSPPYAIAQLQDEAAILYSAMGLVIIKSMPSSSTNEA
                     IFITILFMLGVTTCLTGLSFYFVGKFRFGNIIRYLPYPVICGFMAATGWLVLSGTFAL
                     LTGKALHQNWLVFFHKEEILLWAPGFIAGIVVYIFKEKLGYRYALQLMFISLVILFYA
                     LFYIFNLEYLVDPTEGYVLGPFNQSHIDSLMKPEIWQMIHYPFSMTLLNYIGLVILVS
                     FIALLLNASSYELIVNKQLDLNKELRIAGIGNVFSGLLGGMVGYLSLSASTVAKEYGG
                     ARIIGVMAFVPMLLILCFGAVVVECFPKMAIGCYLFYIAFCFLSEWLINTWRLLNLSE
                     YLIVLLILVIAIVFNMITAVAIGTVISIFIFAFRYSKINPVKYLFSGADYNSSFERNP
                     ISQSILSTQGDEIQFLKLQGFLFFGSIYRLLQLIKSIQKARYIILDFELVYNIDSSRI
                     ILMKNLKLHAEKNNISFAICSLKPIVYHELMKTNLLQSKTNWLKVFTDQESALEWCED
                     QVIEKYTENINIEEVTLEKQLLYLGFSSELVAWISEKASIKPYNPDDIICHEGEESNS
                     VYFIHRGRVTAFVGDKRVLVVGSGNVLGEIAIYTHKKRTATLKTNEKTIVYEIDLKSI
                     QELSKNKPLLLVQFHVCMAKILANRLSVLNKRIKVFDSTAILQ"
     gene            complement(9436..>10478)
                     /locus_tag="JBH85_09735"
     CDS             complement(9436..>10478)
                     /locus_tag="JBH85_09735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkane 1-monooxygenase"
                     /protein_id="HAU0946482.1"
                     /translation="LLVYLLIPLPFVSLYLGGWYSFLPFFIVFAFIPLIDAFLHDSVN
                     PTKEQEQELLKDKFFKYITCAYVPIQITIIAYGVYIVSTQNLVWNEWLGFTMSLGLIS
                     GGVGINFAHEMMHKNSKLQQLMSKILLVTVCYGHFFIEHVKGHHVKVATPDDPATARL
                     GENLYQFLPKTLLGSFQSALILEEKRLSHKNYSIWSIHNNFWWILTVPLMICIVCFIF
                     GGLIALSFFLLQSFIAILTLEIVNYIEHYGLERKMLSNGQYEKVNPNHSWNANHWLSN
                     QLLIHLQRHSDHHAHGARPYQILRHMENSPQLPSGYLGMIIIALIPPLWHYIMDKRVL
                     AYRIQLRQLEQL"
BASE COUNT         3369 a         1732 c         1989 g         3388 t
ORIGIN      
        1 ttacacaaaa aataatcagt tattcaaatt gacagttgaa aaaaagttat ctatcattgc
       61 caacctcata aatttagaag cagggttatc atgaaacgca cttttcaacc tagtaattta
      121 aaacgtaaac gcgatcatgg ttttcgttta agaatgtcta ctcgagctgg tagattagtt
      181 ataaaaagac gtcgtgctaa aggtcgtaag cgtttatctg cctaagtgtt tgcatttaaa
      241 aaagcgcaac ggctattaaa aaaaaatgat tttgatttcg tgtttgaaag cgcgaaaaaa
      301 ataactacag atgactttat tttccttttc agagaaaata agttaggcta tgcacgcctt
      361 ggtttagcat tgtcaaaaaa aatgatagct aaggctcatg acagaaatcg cattaaacgg
      421 ctacttagag aaagttttcg tcatactaac ttgcctgctg tagatataat cattttggca
      481 agaccaggtc tagcaaagaa aaccaattta ggtataaata ctaaattaaa taaaacatgg
      541 gaaaaattag cctcatgcta cggcaaatag tttgcttacc aataaaaatg tatcagtatt
      601 ttattagccc tttgataaca ccatgttgtc gctattatcc gagttgttca gagtatgctg
      661 acagtgcgat caaacattat ggcgtaatta aaggtttatt gatggcactt aacagattgt
      721 ctcgttgcca tccatggtca aaaggtggct atgatccttt atttcctaac gataagaatt
      781 gagaatattt aatggatata cgacgtatag ttttatatat ggcgcttgcg cttattggtt
      841 tatcactttg gaacgcttgg caaattgatt atccagccaa acaaccagtt gaagagaaga
      901 cagcaagcca attaacatca gatgggcatt tgttaccaca aataattcct tctaatgcag
      961 agcaacccgt aactttgaaa gcagaggaaa aagcaagcag cggtaaacaa ttgattcagg
     1021 ttaaaacaga tgttttggat gtcgacattg atttaaaaaa tggagatatt gttaaaggtt
     1081 tattgcttga ttatccacta agtgttgaag ataaaaataa accattccct ctcttgcaaa
     1141 atcaggccag ccagagatat gtagcgaaca gtagcctttt tgttttagat ggccagacac
     1201 cacaatcatt ggattttgat tttacatcag aaaaagaata ttacgaattg aaacctgatc
     1261 aaaaccagct gatagtcact ctaaatggca aaagcgaaga cggtttggat gtgaaaaaag
     1321 aatttgtttt tacaaaggga agttatttaa tcgaagtcaa ttacaagata gccaataccg
     1381 gtaattcgtt atggaaaggg tattttaata cccagttatt gcgcagttct cccaaagaag
     1441 acaaatcgag tatttttcat attggctcgt atacaggtgc ttccttttca aatcctggaa
     1501 aaaatcgtta ccaaaaagtt agtttcagtg acatgagcaa atctaacctg gatgtggatg
     1561 caaaaggtgg ttggattgct atgcaacaac actatttttt gagtgcttgg gttcccaatg
     1621 cggatagtga aaacaagttt tatacattag ctacggataa agattatact attggagcag
     1681 taagccagcc tattacggtc aaaccaaaag aagataaaat tgtaggatcc aaattataca
     1741 taggaccaga aattaccagt gttttaaaag gcatatcccc atctctggat ttaacggtgg
     1801 actatggcat tttgtggttc ttgtcttcgt tattattttc tttaatgaaa gcaatttata
     1861 ctgttgttgg gaattggggc tggtcaattg ttcttgtgac tgtcctaatt aaattggcat
     1921 tttatcgatt atcagctaca agctataaat ccatggctag tatgcggaag ttgcagccta
     1981 agttgcaagc tttgcgtgag cgatatggtg atgataaagc taaaataagc caagctacca
     2041 tggaacttta taagcaagaa aaagtaaatc ctttaggcgg ctgtttacct atattaattc
     2101 aaattccagt ttttatagcg ctctattggg ttttactgga aagtgttgag ttaagacaag
     2161 ctccatttat attttggata aatgatttgg cttcagcaga tccttaccat gttcttccat
     2221 tgatcatggg agcaaccatg ttgattcagc aaaagctcaa tccagcacca gctgatccaa
     2281 tgcaagctaa ggtaatgatg tttttaccca tattatttac cggactgttc tggaattttc
     2341 cttctggtct ggttttgtac tggattgtga ataatacttt atcaatatta cagcaatggt
     2401 acatcaccag aaaatactca gatgaaaagc cagctaaaaa ggttgttgcc acagcaaaat
     2461 aaatgtcaat agataccatt gttgctatcg ctaccccgcc aggacgaggc ggggtaggaa
     2521 tcgtcagaat atcaggtcca aatgcttatg ctatagccct ttgtctaaat gggaacaaag
     2581 cattgcaacc acgtttagcc actttttgct ctttatataa aggaaataat gaagtccttg
     2641 atcaaggatt ggttctttat tttaaaggac ctcattcttt tacaggtgag gatgttattg
     2701 aaattcaagc gcatggctca cctgtagttt tggatttatt aattaaggaa tccatagcag
     2761 caggcgcaag gctagccagg ccgggtgagt tttctgaaag agcatttctt aatgataaaa
     2821 tcgatttaat tcaagcagaa gccatagctg atttaattca agccagttca gatactgcgg
     2881 ctcgtatggc tttaaaatca ctgcaaggtg atttttctaa aaaaataaat caattgaatg
     2941 aagaactaat ttacttacgc atgtatgttg aagctgctat cgattttcct gaagaggaaa
     3001 ttgattttct taatgatgga aatgtcagcc aattactaca aaaaattatt ggacgattag
     3061 aagatatacg ttcacaagcg aatcaaggag ttttgttgcg tgaagggtta tccttggtta
     3121 ttgctggcag gcctaatgca ggaaaatcaa ccttaattaa caacctggca gggcgggatg
     3181 ttgccattgt tactgaaatt gccggtacta cgcgagatat tatgcgagaa catatcctat
     3241 tggatgatat ccctctacac attatcgata cggcaggatt aagagacagc gatgatctgg
     3301 tggagaaaga gggaataaaa cgtgcttggc aagagttgaa gcgagctgat tgtgtgcttc
     3361 ttgtagtaga tattaacaat cctgatcaac aaaattctct gcttaatgaa ttgagattaa
     3421 cattacccaa taaaataccc ataatcacgg tatacaataa aattgatact actaaactta
     3481 cagcaaaatg tgatgagcat acagtttatt tgtctgcaaa aactggtgag ggactggatg
     3541 agctaaaaaa ggtgattaaa caagtggttg gatatcaacc aacagaaggc caatttttag
     3601 ctcgcagacg acatctacaa gcgttggatg aagcaaaagc tttgttacta actgggcaat
     3661 cgcagctaac aaatcataaa gctggagaat tgttggcaga agatttacgg ttagctcatc
     3721 agactttatg tgaaattaca ggtgagttca cttcagacga tttattagga aaaatttttt
     3781 ccagtttttg tattggaaaa taacgatgat gcaaggcagt catcatgtga attttcaatt
     3841 tttcttcttt tgaatacagc aaaattatta ttaaatattt tgtggtgatg tgctttattg
     3901 ggtcaataaa tttattcttt tagtttcagc acatttcaaa tgaaccagct tttatcttga
     3961 ttcattttta tgcaaaaatc agtctgaatc gcaaaaatca atgtgtaaaa tattaataca
     4021 aaaaagcttg tcaaaataca tatcaaatgg taacgtatta ttgtaaaact tcctgtgtaa
     4081 tttttgtgag ttcttaatat ggtctactca aaacaaagtg ctgcatttcg tagggataaa
     4141 caacaatttt tcgcccaaat tccgaaggat agtaaactgg acacaaaaat tgtaacaatt
     4201 gatgatcgag taaacactat agattacact tttttactac atcacaaaca ggatttagaa
     4261 gctgaattca ctcaaatgtt tactgtgtta cagcagcaag acgatgaaaa taaagaaatt
     4321 ttctggctgt attgctacta ttgtgcgtcc ttgctggagg ctttccacaa agcttattca
     4381 caaaacagta aacaagctga atatgctaaa ataaaacaaa aaataaaaga ccatttaaat
     4441 aaggtcaatg tcaaagagga agaatctggt tttattcaat ccttgtacaa ttcctttctt
     4501 ggaggttttc gcaatttaat cagctctcca ttgcacgctt ccaaaatcag agattatgtt
     4561 gcctactcga acttgtgtcg tatctattgg acgttttgtc gtttgacttt aactaatgga
     4621 ttgagcgtag ctcgagacct aaaaattatt gagaagttgg atgctatttt aggaactcat
     4681 actgatgtcg ataagattat ttcaactctt caagcaccta ccggggttat aacttacttt
     4741 agtgttggtt tctttttgat gcgcttaata attgatggtg gtatgctatt aagacatacc
     4801 tttttcccta ctgaattgga aaaaggcgca gaaaatggtt gtgaaatcca tcaaatggat
     4861 tatttgccag gcccagccag tctcgaagca tatagaaaaa gttatattct tgttcatgaa
     4921 gacaatcaag aagtatcact ctattacatt cctagaagtg gtaaagcaga aaaattaagc
     4981 attaaagaaa ataacaaact gaaagatgct ttactgaaga aaatgaataa ggacacatca
     5041 tcccttcgtt tgaactcaac tgaagtagaa gagataatca ctcatcaaac agggcatgtt
     5101 cccgaagtga ctacggcatg ggacagattt aaacatgagt tttataaacg acactgtaat
     5161 tttgccaatg actttgtttg ggctacaatc aacctgctta ccaactataa ttaccttttt
     5221 aatatttccg ctcctgcagc agggatgatc acttctgttt ttctcgggtt cgacgtatgc
     5281 atggctttat ataagtgcaa cttagccaaa caagaatatt tgattaagaa agctcaatat
     5341 ttgcaggaaa tagaagacta taataatccg gaaaaattca aaaaaatgac tcctgaacag
     5401 cgattattgc atatagagat gctcaataag caacttagag agcttgaaat taattataaa
     5461 acccaggagg ctacttttta ctttgttgcc gctgctgccg ccttattgat gatgggattt
     5521 actgcatcga tgctggttag cccgcctata ttagtcgttg gttgtttttt tgcctgtact
     5581 cttgctgttg caatgtatct gtctacggga tcttattcga aatacgagga aaaaagtttg
     5641 tatttggaag aggctcaatt gacaggtaaa aaccttccag ttgctcttaa agaatatgaa
     5701 gcagctcgga atgattttat ttttaccatg gtaaaaaata cggtcatgcc tatagtttta
     5761 attacaacat ttgcaatttg ctggcctgct gcaattgttt taacagctat gtacattggt
     5821 tatgaaattt tccatgctta tgaccaacac tctgaagcga aagcggccaa acagttggct
     5881 ttagccgctc cttcagagga aaaggatgga tatatggcct tagccactcc caattaggtt
     5941 tcagggtaca ttgctttgac ggcagcgata tctttttcac ttaaatgagt tcgctgccct
     6001 atttcaactc catcaactag aggtatgata gttggctgac cattcttgga aaaagcaaat
     6061 cgaccataat gcataatgga tccatagtcg tattcaccga aatctttccc atcagttaaa
     6121 tgttggtcaa aattaaattt atgttcttca tcaatatttt cccagacgat acgaatatat
     6181 tgatttctgt ctgatcggga ttgctcatgc cacatgccca aggcatgtcc tatttcatgt
     6241 accgtattca tggtagtaca tcttggcgcc aaattgatct cttgcttccc tccctggcgt
     6301 ccaacgtagg aagagcaggt tgtgccttct gccgggataa aagaaatgta atcacgatag
     6361 tcatagcgat ttttagaagt taattcaacg aattctaaat tcgtgttttt ctgccaatga
     6421 tctattgctt gtaaaatggc aagcttgttt ataaaaggta aattttcagc aatttcataa
     6481 gggataacac catttggcca gcgtgaacct cctacttttg gtgtaataac agcaccttgg
     6541 tttttaagat tctctgcttt accaatcaaa atatcacctt ccactactgc aaattctcca
     6601 acttgttcat aggtaatggt acgactgccc attattggat cagttattgt gatttgatgg
     6661 agattaattg cgtaagaaga ggagaaacat aatgaggaat aaaacaaact ggcaatccat
     6721 gatttagttt tcatatatag tccttaagtc taaaaaaacc aaggacagtt taggggaaag
     6781 agggagtaga tttccagaac tttttatata gtttgttgac tcttgataac cttaaagcaa
     6841 gaacgctttt acaaaacgtc cttaattgat aattatgcgc aattacaaga ataaatagct
     6901 ataagaatat agcggtgcaa aatatataag gttaagttta aatatttttg ccaagagtcg
     6961 gtgtaatgtt gttaacctga gcactatctc cattttgatt aaagaatttt aaatgcttat
     7021 ctggttattc gaataattat taatatcctt agtttcatga acaatagctt gtaaagcaat
     7081 atccatgcta agagaaaatt atgcagaatc tttaatgaat ggaggctgct attttaattc
     7141 gatcagaaat gtgaaaaact ggatttttct gttatttact aaaataatcc tttggttttg
     7201 aaatgaatga gtgagaggta ggatgactcg aagtcaattg attttggcta ttttagcagg
     7261 cttggtcata agtattgaca atatgattag tattgttgca ttttcttcgc ttatttatca
     7321 aggtgcatta gagatttata ttccacttgt cattaatata ttggcaattt cagtaattat
     7381 tataagcgcc agctatttgt tcatgtcttc ccctccttat gcaatcgctc agttgcaaga
     7441 tgaagcggca attttgtatt cagccatggg tttagtgata attaagtcga tgccatcaag
     7501 ttctacgaat gaagccatct ttattacgat tctctttatg cttggagtca ctacctgttt
     7561 aacgggctta tcattctact tcgttggaaa atttaggttt ggaaatatta tccgttatct
     7621 gccatatcct gtgatttgtg gttttatggc agcgacaggc tggctagttt tatcaggaac
     7681 atttgcatta ttaactggta aagcgctgca tcagaattgg cttgtctttt ttcataaaga
     7741 ggaaatatta ttgtgggcgc caggttttat tgcgggaata gttgtttata tttttaaaga
     7801 aaaattaggt tatcgatacg cgcttcaatt gatgtttatt tctcttgtaa ttctattcta
     7861 tgctcttttt tatattttta atttggagta tttggtcgat ccaaccgaag ggtacgtctt
     7921 gggacctttc aatcaaagcc atattgattc gctcatgaaa cctgaaatat ggcaaatgat
     7981 tcattatcca ttctcaatga ccctattgaa ttacataggg ttagttatac tggtaagttt
     8041 tattgccttg ttattaaacg caagcagtta tgaattgata gttaataagc aattagattt
     8101 aaacaaggaa cttcgtatag caggtattgg caatgtattc agtggattac ttggaggaat
     8161 ggttggctat ttgtctttgt cagcgtccac tgttgcaaaa gagtatggcg gcgctcgtat
     8221 tataggggtg atggctttcg ttcccatgtt gcttattttg tgctttggtg ctgtggtcgt
     8281 tgaatgtttc ccgaaaatgg ctatcggctg ttatttgttt tatatcgctt tttgctttct
     8341 atctgaatgg ttgatcaata cctggcgttt attaaattta agtgaatatt taatcgtttt
     8401 gctgatattg gttattgcta ttgtctttaa tatgattacg gcggttgcta taggaacggt
     8461 tatttcaatt tttatcttcg cttttcgcta cagcaaaata aatccggtta agtatttgtt
     8521 ttccggagca gattataatt cttcttttga gagaaatcct atatctcaat ccattttatc
     8581 gacacaggga gatgaaattc agtttttgaa gttgcaagga tttctttttt ttggctctat
     8641 ttacaggcta cttcagttaa taaaaagtat acagaaagct cgatatatta ttttagactt
     8701 tgagcttgtc tacaatatcg actcatcccg cattatttta atgaaaaact taaagctcca
     8761 tgcggaaaag aataatattt cctttgcaat ttgttcatta aagcccattg tttatcatga
     8821 attaatgaaa accaatttat tacaatcgaa aaccaactgg cttaaagtct ttactgatca
     8881 agaatcagct ttagagtggt gtgaagatca agttatagaa aaatatacag aaaatataaa
     8941 tattgaagaa gtaacacttg agaaacagtt actctattta ggtttttcct ctgaactggt
     9001 agcatggatt agtgaaaaag cttctataaa accttataac cctgatgata tcatttgtca
     9061 tgaaggagaa gagtcaaaca gtgtttactt tattcatcgg ggaagagtta cagcatttgt
     9121 cggtgataaa cgtgtacttg ttgtgggttc aggtaatgta cttggtgaaa ttgctatata
     9181 cactcataag aagcgcacag caacattaaa aaccaatgaa aaaaccattg tttatgaaat
     9241 tgatttgaaa tcaatccagg agctttctaa aaataaaccc ctactcttgg ttcaatttca
     9301 tgtgtgtatg gctaaaattt tggcaaaccg tctctcggta ctaaataaac ggataaaagt
     9361 ttttgattcc accgccatat tgcaataaaa gttaataaaa tattctttta ctgtgaaata
     9421 ataaggaaca acgttttaaa gttgttccaa ttgtcttaac tgaattcgat aggcaagaac
     9481 tctcttgtcc atgatgtaat gccagagcgg tggaattaaa gctatgataa tcattccgag
     9541 gtaccctgag ggaagttgag ggctgttctc catatgacgt aaaatttgat agggtcgtgc
     9601 accatgggca tggtgatctg aatggcgttg taaatgaatt agcagctgat tacttagcca
     9661 atgattagca ttccatgaat gatttggatt taccttttca tattggccgt tactcagcat
     9721 tttcctttcc agcccatagt gctcaatata attaacaatt tctaatgtca ggatggcaat
     9781 gaatgattgt aataagaaaa atgacagagc gattaatccc ccaaaaatga aacagactat
     9841 acaaatcatt aatggcacag taaggatcca ccaaaaatta ttatgtatgc tccagatgga
     9901 ataattttta tgcgataaac gcttttcttc caaaattaag gcagattgaa acgaacctaa
     9961 taatgttttt ggtaaaaatt gatataaatt ttcgcctaat cgtgctgtgg caggatcgtc
    10021 aggcgttgct actttaacat gatggccttt gacatgctcg ataaaaaaat gaccatagca
    10081 aactgtaacc aataaaattt tactcattag ttgttgcaat ttactgtttt tatgcatcat
    10141 ttcatgagca aaattgatgc ctactccacc tgagataagt cctagtgaca tggtaaatcc
    10201 taaccattca ttccaaacca aattttgagt actaactata tagactccat aagcaatgat
    10261 ggttatttgt ataggcacat aggcgcaagt aatatattta aagaacttat cttttaggag
    10321 ttcttgttcc tgctcttttg ttggatttac cgaatcatga agaaaggcat caattaatgg
    10381 aataaaagca aaaacaataa aaaagggtag aaaactgtac cagcctccta aatataaaga
    10441 gacaaagggt aatgggataa gtaaatagac cagtaaaa
//
LOCUS       DACVWI010000106        10325 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.106, whole genome shotgun sequence.
ACCESSION   DACVWI010000106 DACVWI010000000
VERSION     DACVWI010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10325
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.106"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..401)
                     /locus_tag="JBH85_09740"
     CDS             complement(<1..401)
                     /locus_tag="JBH85_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR family transcriptional regulator"
                     /protein_id="HAU0946483.1"
                     /translation="MPMSSKRELMPNSSNVLRHMENHFALTTCEDIKNIMQPLLIKHG
                     MTVFNYYRIYFDSTVIRLSTDQKWTEHYFKMNYLETLTIPESYLKKPLNYYLWLTDDC
                     PLMLQDAAINFDMANGISIAKINHDSIEYFC"
     gene            complement(637..1383)
                     /locus_tag="JBH85_09745"
     CDS             complement(637..1383)
                     /locus_tag="JBH85_09745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal large subunit pseudouridine synthase
                     B"
                     /protein_id="HAU0946484.1"
                     /translation="MSSERLQKILSQAGLGSRREMERWIDNGWVQVNGKPAKLGDSAG
                     PSDKISVKGKLIPNPLKGKQNIRVLLYHKPVGEVSSRHDPKFEKTVFDNLPHLRQGRW
                     VQVGRLDLNTSGLLIFTNNGELANQLMHPKYGLEREYAVRVHGQVSQESLNNLLKGVM
                     LDDGLGKFTKIQFRGGEGTNSWYHVTLNEGRNREVRRLWESQGVEVSRLIRIRYGMLT
                     MPRFLSRGQFYELTPKEVTEFLDSLPNELS"
     gene            complement(1373..1963)
                     /gene="scpB"
                     /locus_tag="JBH85_09750"
     CDS             complement(1373..1963)
                     /gene="scpB"
                     /locus_tag="JBH85_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HAU0946485.1"
                     /translation="MHEMIDNELKNIVEALVLSNNEPVTLEKIQETFDEWQRPTLEDL
                     QAIIESLKVDYSSRAFELIQVAGGFKVQTKSKYATWVARLQIEKPAKYSRALLETLAI
                     IAYKQPVTRADIEDIRGVAVNSQIIKTLMEREWIRIAGYKDVVGKPAVYTTTKEFLNY
                     FNLNYLSELPPLPEIMDTLTLHEATQPIKECTQNEQ"
     gene            complement(1956..2747)
                     /locus_tag="JBH85_09755"
     CDS             complement(1956..2747)
                     /locus_tag="JBH85_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HAU0946486.1"
                     /translation="MNIDLQPAPVVKAVVDGKEITQFPEDLYIPPDALEVLLDSFTGP
                     LDLLLYLIRKQNIDILDIPMTSITNQYLQYIQLMENRRMELAAEYLLMAAMLAEIKSR
                     LLLPVTPDSEEEEEDPRMTLVRQLQAYEQIKQAAELLDGLPRQDRDNFTIQVNPDEVE
                     TIKVYPEVELSELVEAMKVLLKREEHYSKHQVSRELMSVRERMSRILFQLQHQKILEF
                     SQLYTLEEGRMGLVVSFLAILELAKQSLLIITQTQPFSPIHLQAA"
     gene            complement(2747..3961)
                     /locus_tag="JBH85_09760"
     CDS             complement(2747..3961)
                     /locus_tag="JBH85_09760"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HAU0946487.1"
                     /translation="MSVLFTSNKRVVSGMRVSGRLHLGHYHGVLKNWIKLQHQYDCFF
                     FAADWHGLTTQYEDPNFIEKHLWDMIIDWLACGVNPGLCKIFIQSWVPEHAELHLLLS
                     MITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADVLLYHADYVPVGEDQVA
                     HIELTREIARRFNYLYGREANFEELAAAAIKKMGKKNGKIYTELRRQFQEHGIHESIK
                     TAQALLEDQPNLSIGDKERLLGYLEGSGKIILNEPQPLLTETAKMPGLDGQKMSKSYH
                     NTIMLRDEPALVEKKILTMPTDPARVKRTDPGEPEKCPVWQFHKVYSNEEVKDWVQKG
                     CRTAGIGCIDCKRPVIGAIHQELKPIQEAISDYEADLGSVKRIVAEGSEAAREEGNKT
                     LNTVREVMGLDY"
     gene            complement(4207..4872)
                     /locus_tag="JBH85_09765"
     CDS             complement(4207..4872)
                     /locus_tag="JBH85_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HAU0946488.1"
                     /translation="MHAYLARMEHETGDFMSQFFALHPDNPQARLLRKAVSIIEEGGL
                     IVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLSQLGTYAKVSNPIFR
                     LLKAFTPGSYTFILNATHEVPRLMLHPKRRTLGLRVPDNTITLSLLECLEAPLMSTTL
                     ILPGAQAPLSEPEAIKDLLGNQIDLIIDGGNCGHEPTTVVDLTGDYPIIIREGKGDPE
                     PFK"
     gene            complement(4824..5672)
                     /locus_tag="JBH85_09770"
     CDS             complement(4824..5672)
                     /locus_tag="JBH85_09770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HAU0946489.1"
                     /translation="MQFMIDLHCHSSFSDGALTPEELIKRASTLQVQCLSLTDHDTVA
                     GYDALYGAAIHTNIEIVKGIELSTRWKKYDIHILGYQINHTTELQELIAHQNKSRIER
                     AEKIGESLHSIGIDKAYEKACLLAGHKRVGRPHFAQVLINEGKAKDMKSAFKNYLGRG
                     KCAYIPTLWISMHDAVKGISHSGGQAVIAHPLKYGLTRSKLRELITEFKEAGGVGMEV
                     VSGEMTTVQIQEMAGMCERFHLLASSGSDYHSDAQSCINLGRQRQLPIICTPIWQEWN
                     MKQGTL"
     gene            5942..6892
                     /locus_tag="JBH85_09775"
     CDS             5942..6892
                     /locus_tag="JBH85_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HAU0946490.1"
                     /translation="MSSTLNSEIIKLPPLNTRELANLCGVLHSNLKILEQHFKVSIKI
                     KNHSMIICGQSGDNFEEIKKVLKLLYPLTGEPIDTKTLRVLINEDYQTAMTHHIRLSR
                     KSISARNSKQAAYLDSINMHDITFAVGPAGTGKTYLAVSKAIECFEKGEVQRLIFVRP
                     AVEAGEKLGFLPGDLVEKVLPYLRPIYDALYEMIGFKETQKLIQTDIIEILPLAFMRG
                     RTLNESFIILDEAQNTTIMQMKMFLTRMGFGSKTVITGDITQVDLPKGIDSGLAHAIQ
                     LFRHFPDISIHTFTSREVVRHPLVSKIVDCYDNEMERIKK"
     gene            6889..7365
                     /gene="ybeY"
                     /locus_tag="JBH85_09780"
     CDS             6889..7365
                     /gene="ybeY"
                     /locus_tag="JBH85_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HAU0946491.1"
                     /translation="MTYHIDIQNATGKLLPLSEDEITKLASLALRDHKQDAELTVRLV
                     DVEEMTYLNHTYRKKNKPTNVLAFPCSLPANIELECPLLGDVVICPEVLLAESAQFNK
                     SLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLLAELGYANPYEVEENELE"
     gene            7325..8215
                     /locus_tag="JBH85_09785"
     CDS             7325..8215
                     /locus_tag="JBH85_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HAU0946492.1"
                     /translation="MLIHMKSRKMNLNKLEDGGSWFSRLKQFLQGEPQNQEELVSLLR
                     DAQIRSLINSETLAMIEGAILFSKMRVRDIMLPKNQMVCINKDDDFKHIISIVTQTGH
                     SRFPVTSENSDEVVGILHAKDLLKYQPENMESFDLLDICRQVTFVPESRRLDSLLSEF
                     RSNRNHMAIVVDEYGEVSGFVTIEDIIEQIIGDIEDEFDIDEDAYIKAHEGHCYIIKA
                     HTPIEEFNEQLNADFSDETYDTIGGIVLNKFGYLPQRGEVIIIDDFEFKVLNADSRRI
                     KLLECLDKRSPEKLNSTVKG"
     gene            8223..8903
                     /locus_tag="JBH85_09790"
     CDS             8223..8903
                     /locus_tag="JBH85_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAU0946493.1"
                     /translation="MSSSILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALN
                     QVFDAIILDVMLPKLNGFEVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPK
                     PCNPRELVARLRAILRRTQKIPTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNI
                     LEMLIKSPGQAFSKEELTEYALGRKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVR
                     GFGYMFNA"
     gene            8869..10263
                     /locus_tag="JBH85_09795"
     CDS             8869..10263
                     /locus_tag="JBH85_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HAU0946494.1"
                     /translation="MSAGLGTCLMRSLYWKIFVSFWLATILIIFTTAWVTSQIAQKSS
                     QPAREEMFMDSYANAAVATYESGQQSALLKWLDKIGLSRHMTLYLLTSTGEIIGAQKP
                     PDAVKKISENLINDELPSDGIFKTGKLVVSHEILSTSGKYYRLAAVSEKPISYFVQIP
                     WAGLTIRLTLAIFISGLICYLLSRYLTQPLRSLGMAAKSIAKGNLNTRVGRFRGHSKD
                     EIAELSNEFDRMAEQLEALVHSKERLIQDISHELRSPLARLKIAIELGKKKTKHLADN
                     EFARMEIETSRLNDLIGEILDFARLEKSTTELHLSQTNIADLLAQVISDANYEFSHNS
                     IRIQAGIITPCELNIDQRLIHRAIENIVRNASHYSPPDEKVLISSSYNKNKDQVYIDI
                     NDKGPGVPEDQLEKIFNPFYRVDTSRTKKTGGYGLGLAIAARAVALHQGEIIAKNREQ
                     GGLLVRIILPADVK"
BASE COUNT         3241 a         2064 c         1834 g         3186 t
ORIGIN      
        1 aaacaaaaat attctataga atcatggttt attttagcaa tagatatacc attggccatg
       61 tcgaaattta ttgctgcatc ttggagcatc aaaggacagt catccgttag ccataaataa
      121 taattcagcg gtttttttaa ataggattct ggaatagtca gcgtctccag atagttcatt
      181 ttaaaataat gctcagtcca tttttggtct gtagagagtc taatgacagt actatcaaag
      241 taaattcgat aataattaaa gactgtcata ccatgtttta ttagcaaagg ttgcatgata
      301 ttttttatat cttcacaggt agtcaaggca aagtgatttt ccatatgcct taaaacattt
      361 gatgaattag gcattagctc tctcttcgaa ctcatgggca aataatcttg cgtaggtttt
      421 cagatctgga ttcagcattt tttggaaagc catataaatt gctccagtac ttcttcagat
      481 gttaaatttt cgttccctaa aacttcttca actttgaata tgtttataca tgtgaggata
      541 ggattaatca aaaataactg tccagaaaat tatcattctt ttcaagacag ttgatatagt
      601 gaatacaacg aaatccaacg tctgatttta aatcatttaa gacaattcgt tgggtaatga
      661 atcaagaaat tcagtcactt ctttgggggt aagttcataa aactgccctc tggataaaaa
      721 tctgggcatt gtaagcatgc cataacggat tcttattaat cgactaacct caacaccttg
      781 agactcccac aaccgacgta cctctctatt tcttccttca ttaagggtca catggtacca
      841 ggaatttgtt ccttctcctc cacgaaattg aattttggta aattttccca aaccatcatc
      901 caacataacc cctttcaata agttatttaa agattcctgg ctgacttgac catgaactcg
      961 tacggcatac tctctttcca aaccatattt gggatgcatg agttggttag ccaattcgcc
     1021 attattagta aaaatgagca acccggaagt atttaaatcc aggcgcccca cttgcaccca
     1081 acgcccctgt ctaagatgcg gtaaattatc aaatactgtt ttttcaaatt ttggatcatg
     1141 tcgactggat acttcaccga ccggtttatg gtaaagaaga acccggatgt tttgtttgcc
     1201 ttttaaaggg ttgggaatca actttccttt gacgctaatt ttatcactag ggccagcgga
     1261 atctcccagt ttagctggtt tgccattaac ctgcacccaa ccattatcaa tccaccgctc
     1321 catttcacga cgagatccaa gtccggcttg acttaatatt ttctgtaatc tttcactgct
     1381 cattttgcgt acactctttt ataggttggg ttgcctcgtg cagggttaat gtatccatta
     1441 tttcaggtaa gggaggaagt tcacttaagt aatttaagtt aaagtaattt aaaaattctt
     1501 ttgtcgttgt ataaacagcc ggcttcccta ctacatcttt atagcctgct atacgaatcc
     1561 attccctctc cattaacgtt tttataatct ggctgttaac ggcaactcct ctaatgtctt
     1621 caatatcagc acgcgtaaca ggttgcttat aagcaattat tgccaaagtt tcaagcagtg
     1681 cgcgcgaata ctttgctggc ttctcgattt ggagacgagc aacccaagtg gcatatttgg
     1741 attttgtttg taccttaaaa ccacctgcaa cctggataag ctcaaaagca cgggaagaat
     1801 aatctacctt taagctctct atgatagcct gcaaatcttc taatgttggt ctttgccact
     1861 catcaaaggt ttcttgtatt ttttctaaag taacgggctc attattggat aataccaaag
     1921 cttcaacaat attttttaat tcattgtcaa tcatttcatg cagcctgcaa atgtataggt
     1981 gaaaatggct gagtttgtgt aataatcaat aaagactgtt tagccagttc aagaatagct
     2041 aaaaaactca caaccaatcc catcctgccc tcttcaagag tatataattg gctgaattcc
     2101 aaaatttttt gatgctgcaa ttgaaagaga atacgactca ttcgttcacg aacagacatt
     2161 aactccctgg aaacttgatg tttggaataa tgctcttcac gtttcagcaa aactttcata
     2221 gcctcgacta attcagataa ctcaacttca ggataaactt taattgtttc aacctcatct
     2281 ggatttacct gaattgtaaa attatctctg tcttgtcttg gcaatccatc caataattca
     2341 gccgcttgtt ttatttgctc ataagcttgc aactgtctta ccagagtcat acgtggatct
     2401 tcttcctcct cctctgaatc tggtgtgact ggcaataata gacgtgactt gatttcagct
     2461 aacatggcag ccattaataa atactcggca gccagctcca ttcttcgatt ttccatgagc
     2521 tggatatatt gtaaatactg gttggttata cttgtcatgg gaatatcaag aatatcaata
     2581 ttttgcttgc ggattaaata cagcaataaa tctaatggcc cggtaaaaga atccagtaac
     2641 acctccaatg catcaggagg aatatacaaa tcctctggaa actgagtaat ttccttacca
     2701 tccaccaccg ctttgactac aggcgcaggc tgcaaatcga tattcattaa taatcaagcc
     2761 ccatgacttc tctgactgta tttaaagtct tgtttccttc ttctctggcc gcttcacttc
     2821 cttctgctac aatacgtttt accgaaccta aatcagcttc ataatctgaa attgcttcct
     2881 gtattggttt aagttcttga tggatagcac caatcactgg cctcttacag tcaatacaac
     2941 caattcctgc tgttcggcaa cctttttgca cccaatcttt tacttcctca ttagaataca
     3001 ctttatggaa ttgccaaaca ggacattttt caggctctcc tggatctgta cgtttaacac
     3061 gcgccggatc cgtgggcata gtcagaattt tcttttcaac taaagctggc tcatctctta
     3121 gcatgatcgt attatggtaa gatttggaca ttttctgccc atcaagacca ggcatttttg
     3181 cggtttccgt aagcaaaggc tgtggttcgt ttaatataat tttgccactt ccttccaaat
     3241 atcccaacaa ccgctcttta tctccaatcg acaaattagg ctgatcttct aaaagcgctt
     3301 gtgctgtctt aatcgattcg tggatgccat gctcctgaaa ttgtctgcgt aattcggtat
     3361 aaattttccc attcttttta cccatctttt tgattgctgc agcagccagc tcctcaaaat
     3421 tagcctctct accataaaga tagttaaatc ttcgggctat ttctcgtgtt aactcaatat
     3481 gagccacttg gtcttcaccc actggaacat aatccgcgtg gtataaaagt acatcagcac
     3541 tttgtagtaa aggatatccc aaaaaaccat aagttgataa atctttttct tttaatttct
     3601 cttgctgatc tttataagta ggaactcgct ccaaccaacc taaaggagtg atcatggaca
     3661 aaagtaaatg taattcagca tgctctggaa cccaggattg aataaatatc ttacataagc
     3721 ctggattaac tccacaagct agccaatcaa taatcatatc ccaaagatgt ttttcaataa
     3781 aattggggtc ttcatattgt gttgttaggc catgccaatc tgctgcaaaa aagaaacaat
     3841 cgtattgatg ttgtaatttt atccaatttt ttaaaacacc gtgataatga cctaaatgca
     3901 atcttccact gacccgcatt ccagaaacga ctcgcttatt ggaagtaaac agtactgaca
     3961 tcaatttcct cttcttatta taaattaatc aattatttca aatacaaaaa tttctttatt
     4021 ccctgaattc taacctgatg cttgattcaa tcatatttta tccaaatttt atcaagatta
     4081 gagacatgag attaataatc aaaagctaac tggacaaaat aaaattcaat ggcgtcaact
     4141 ctagtctggt aggagcacat aaaattttct ttcactaaat actaacaaaa ccgcgactgt
     4201 attccattac ttaaagggtt caggatctcc ttttccctct cttataatta tcggataatc
     4261 tccagttaaa tccactactg tagtgggttc atggccacaa tttccaccat caattattaa
     4321 atcaatttgg ttgcctaata aatctttaat tgcttcgggc tcgcttaatg gcgcttgagc
     4381 ccctggtaaa attaaagtgg tgctcattaa aggggcttcc agacactcca ataaagacaa
     4441 agtaatcgtg ttatcaggta ctcttaaccc cagtgttctt cgttttgggt ggagcatcaa
     4501 acgaggcact tcatgtgtag cattaagaat aaaggtataa gagcctggag taaaagcctt
     4561 caataatcta aaaattggat tagaaacctt tgcataagta cctaactggg ataagtcacg
     4621 acaaaccagg gtcatattat gatgcttatc caattgacgt aaacggcgaa tacgctccag
     4681 ggctgattta ttgcccaaac tacagcccaa agcatagcca gaatctgtcg ggtaaacgat
     4741 aagcccccct tcttcaataa ttgaaactgc ttttctcaac aagcgtgctt gaggattatc
     4801 tggatgtaaa gcaaaaaact gactcataaa gtcccctgtt tcatgttcca ttcttgccaa
     4861 ataggcgtgc atattattgg taattgtcgc tgacgcccca gatttataca agattgagcg
     4921 tcactatggt aatctgaacc tgatgaggca agcaaatgaa atcgctcaca catcccggcc
     4981 atttcttgaa tttgtacagt tgtcatttct ccagaaacga cttccatgcc aacaccccca
     5041 gcctctttaa actccgtgat taactcacgc aattttgaac gcgtcaatcc atatttaagt
     5101 ggatgagcaa ttacagcctg tccaccagaa tgagatatac ctttgaccgc atcgtgcatg
     5161 ctaatccata aggtaggtat ataggcgcac ttgcctctcc cgaggtaatt tttaaaagcc
     5221 gacttcatat cttttgcctt cccttcatta atcagtactt gggcaaaatg gggtcgaccc
     5281 acccgtttgt ggcctgccaa aagacaggct ttttcataag ctttgtcaat accaatcgaa
     5341 tgcaaggatt ctccaatttt ctcggcgcgc tcaattcgac ttttattttg atgagcaatt
     5401 aactcttgta attctgttgt gtggttaatt tggtaaccaa gtatatgaat gtcatacttc
     5461 ttccaacgag tactgagttc tatcccttta actatttcaa tatttgtatg gattgcagca
     5521 ccatataaag cgtcatatcc tgcaacagta tcatgatcag taagagatag gcattgaact
     5581 tgtaaagtac tcgctctttt tattagttct tctggagtca gtgcaccgtc tgaaaaagaa
     5641 ctatgacaat gaagatcgat cataaattgc agctaattta aaaaaatcga agtatagcat
     5701 aattaacgtg agttcgacat aaaaggcttt tatgactttt atgtcgctaa acgcacgtta
     5761 tcccgtaaaa aagcaaagct ttttatacgg gatccattca aaatacccaa ttctatataa
     5821 gaaaaaccag gtaaaaatat gatgttgtaa agactaaact atccttttct ttgaacaact
     5881 tgcacaacat agtacttttg cactattctt taagtatggt cattaatctt taataaaaac
     5941 tttgagtagt acattaaaca gtgaaataat caaattacca cctcttaata ccagggaact
     6001 cgcaaacctg tgtggggttt tgcacagtaa cttaaaaatt ttagaacagc actttaaggt
     6061 ttcaataaag atcaaaaatc atagcatgat aatatgtggc caatcaggtg acaattttga
     6121 agagataaaa aaagtattaa aattattgta tcctttaact ggcgaaccta tagataccaa
     6181 aactctacga gtcttaatca atgaggatta tcaaacagca atgactcacc atatcagatt
     6241 atctcgaaaa tcaatttctg cacgtaacag caaacaagcc gcatatctgg attctattaa
     6301 tatgcatgat attacatttg ccgtagggcc ggctgggact ggtaaaacct acctggctgt
     6361 ttccaaagca atagaatgtt ttgaaaaagg cgaagtacaa agacttattt ttgtaaggcc
     6421 tgctgtagaa gcaggtgaaa aactcggttt tcttcccggc gatctggtag aaaaagtctt
     6481 accttattta aggcctatct atgacgcact gtatgaaatg ataggcttta aagaaactca
     6541 aaagctgatt caaacagata tcattgaaat tctcccatta gctttcatga ggggcagaac
     6601 tttaaatgaa tcttttatta ttctggatga ggctcaaaac accactatca tgcaaatgaa
     6661 aatgtttttg acacgcatgg gctttggctc taaaacagtc atcacaggtg atatcactca
     6721 agtcgacttg cctaaaggta ttgactcggg ccttgcgcat gccattcagt tattcagaca
     6781 ttttcctgat atcagcattc atacatttac cagtcgtgaa gtcgtcagac atcctttggt
     6841 ttcaaaaatc gtagattgct atgataatga gatggaaagg attaaaaaat gacctatcac
     6901 attgacatac aaaatgctac agggaagtta ttgcccttaa gtgaagatga aatcaccaag
     6961 ctggcatcac tagctctaag agatcataag caggatgctg agctaacagt tcgtctggtt
     7021 gatgttgaag aaatgactta tcttaaccat acctatagaa agaagaacaa accaaccaat
     7081 gttcttgcat ttccttgctc actaccggcg aacattgaat tggaatgtcc tcttttgggt
     7141 gacgttgtta tttgccctga agtgttgctt gcagaaagtg ctcaattcaa taaatcgcta
     7201 catgcacatt ggtctttaat cctgattcat ggagtgttgc atttattagg ttatgatcat
     7261 ataaaagatg aagaagcctc tattatgcaa atgctcgaag ctaagctact agctgaatta
     7321 ggttatgcta atccatatga agtcgaggaa aatgaacttg aataaattgg aagatggtgg
     7381 gtcgtggttt tctcgtttaa aacagttctt acaaggagag ccacaaaatc aggaagaatt
     7441 ggtcagttta ttaagagacg cacaaatacg ctccctgatt aattcagaga ccctcgcaat
     7501 gattgaggga gctatccttt tctcaaaaat gcgtgttaga gacataatgc tgcctaaaaa
     7561 tcaaatggtt tgcattaata aggatgatga ttttaagcat attatatcta ttgtaactca
     7621 aacgggacat tcacgttttc ctgtaacgag tgaaaattct gatgaagtgg ttggcatttt
     7681 gcacgcaaaa gacttgttaa aatatcaacc tgaaaatatg gaatcatttg atttattgga
     7741 catctgccgc caggtaactt ttgtacctga aagcagacgt cttgatagtc tgcttagtga
     7801 atttcgaagt aatagaaatc atatggctat tgttgttgat gaatatggag aggtgtcagg
     7861 tttcgttacc atcgaagata tcattgaaca aataatcggt gacatagaag atgagtttga
     7921 tatcgatgaa gacgcctata tcaaagcaca tgaaggacac tgctatatca tcaaagccca
     7981 tactccaata gaagaattta acgaacagct caacgctgat tttagtgacg aaacctatga
     8041 tacaattggt ggcatagtat taaataaatt cggctattta cctcaacgag gtgaagtaat
     8101 aatcatagat gattttgaat ttaaagttct taatgccgat tcgagaagaa taaagttatt
     8161 agaatgtctc gataaaagaa gtcccgagaa actaaattct actgttaaag gataagtaat
     8221 tcatgagcag ctctattctc attattgatg atgacacaga actaacagat ttattaactc
     8281 aatatttaga gccagaaggc tttaatgtag tatgcgttca tgatggagaa aatggcgtta
     8341 aaaaagcttt aaatcaggta tttgatgcca ttatactcga cgtcatgctg cctaagctta
     8401 atggttttga agtattaaaa gcaataagag agcatttgga aacacctgta ttgatgttaa
     8461 ctgctcgtgg tgatgatatc gatcgcattg ttgggttaga aattggtgca gatgattact
     8521 tacctaaacc ctgtaatcca agagagttag ttgcacgtct gcgtgctatt ttaagacgca
     8581 ctcaaaaaat cccaactccc aaaccaatta ttgaacaaca taatatcatt gtggattgct
     8641 ccaaacgcca cgtgactatg ggaggaaaat tccttgaatt aaccaatgcg gaatttaata
     8701 ttttggagat gttaatcaaa tcaccaggac aagcattttc caaagaggaa ctcaccgaat
     8761 atgctctggg aagaaaatac actgcttatg accgcagtat cgatgttcac atcagcaatt
     8821 tgcgaaataa attaggcgat aatccccagg gggaaccttt agtcaaaact gtccgcgggt
     8881 ttgggtacat gtttaatgcg tagcctgtac tggaaaatat ttgtttcttt ttggcttgcc
     8941 accattttaa ttatttttac tacggcatgg gttaccagcc aaatcgcaca aaaatcatca
     9001 caaccagctc gagaagaaat gttcatggac agctatgcca atgcagctgt cgcaacctat
     9061 gagtcaggcc aacaatcagc tcttttgaaa tggcttgata aaataggcct ttctcgtcat
     9121 atgacactgt atttactaac cagcactggc gaaatcatcg gcgcacagaa gccacctgac
     9181 gctgtaaaaa aaatttcaga aaatttaata aatgatgaac tcccaagtga tggcatattt
     9241 aaaacaggga aattagtcgt tagccatgag atcctatcaa cttctggaaa atattaccgg
     9301 ctagcagcgg tcagtgaaaa accaatctct tattttgtgc aaattccatg ggctggactg
     9361 acaatacgct taactctggc catattcatc agtgggctta tctgctattt actctcacgt
     9421 tatttaactc aacctttacg ctcattaggc atggcagcaa aatctatcgc taaaggaaat
     9481 ttaaataccc gggttggtcg cttcagaggt catagcaaag atgagattgc ggagttaagt
     9541 aatgaattcg atcgaatggc cgagcaatta gaagcgcttg ttcattccaa agaacgatta
     9601 atacaggata tttcccacga attacgctct ccattggctc gacttaaaat cgccatagaa
     9661 ttggggaaaa agaaaaccaa gcatttggct gataatgaat ttgcccgcat ggaaattgaa
     9721 acatccagac ttaatgattt gataggcgaa attctcgatt ttgctcgttt agaaaaatcg
     9781 acaacagaac ttcatttatc ccaaacaaat atcgcggatt tgcttgcaca ggttataagt
     9841 gatgccaatt atgagttcag tcacaattct ataagaatac aagctggaat aattacacct
     9901 tgtgaattaa atattgacca acgactaata cacagagcta tagaaaatat tgttcgtaat
     9961 gcatcacact attctcctcc agatgaaaag gtccttattt catcaagcta taataaaaac
    10021 aaagatcaag tttatattga tattaatgat aaaggacctg gggtgcccga agatcaactg
    10081 gaaaaaatat ttaatccttt ctaccgcgtg gatacctcca gaacaaaaaa aaccggtggc
    10141 tatggccttg ggctcgcaat tgcagccagg gctgtagcat tacaccaagg agaaattatt
    10201 gctaaaaata gagagcaagg tggtttgctt gttcgtatca ttttacctgc tgatgttaaa
    10261 taggatttct atatatcgag ttcctcctta ttgactaaaa ttgatttttg acttgcattt
    10321 tatta
//
LOCUS       DACVWI010000107        10237 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.107, whole genome shotgun sequence.
ACCESSION   DACVWI010000107 DACVWI010000000
VERSION     DACVWI010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10237
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.107"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            109..205
                     /gene="ffs"
                     /locus_tag="JBH85_09800"
     ncRNA           109..205
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="JBH85_09800"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            231..1901
                     /locus_tag="JBH85_09805"
     CDS             231..1901
                     /locus_tag="JBH85_09805"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HAU0946495.1"
                     /translation="MSYLALARKWRPRTFSQLVGQEHINKALINALNQQRLHHAYLFT
                     GTRGVGKTSVARILAKALNCEKGITSEPCLHCDTCIAIEQGRYIDLIEIDGASKTRVE
                     DTRDLLDNIQYAPTNGRFKVYLIDEVHMLSQHSFNALLKTLEEPPSHVKFILATTDPQ
                     KLPVTVLSRCLQFNLKHLPAELINQQLQLILQEERLDFEIQALDILAQAARGSMRDAL
                     SLLDQAITSCETKLLASDVKMLLGHTQQDYALLLLQALAKQEAPIMLVLSQQIIAEGG
                     NFQYVLDEILSYLHQITVYQCLGDNNPLISPKAEIKELAKQFSAADTQLFYQIGIKGR
                     EEMHLAPTLAIGFNMTMLRMYTFKPASHVTTPPLAFEQNNKTCSLIVDDNTPAQNPIG
                     IEPIPVIKATDNTVAYQQTQSLSTDDKKSANSGESMSCDWNEIIPQLKLSGLALNAIE
                     NAEFLGKKEREITFGVHKGHQSLFTPTTINRIETALAGYYKSPVKIILNTQDAVHASP
                     AQQKEKASQEKLEQAEAALHADPVFQQLQQEFSAELVKNSIVLLKDDL"
     gene            1935..2273
                     /locus_tag="JBH85_09810"
     CDS             1935..2273
                     /locus_tag="JBH85_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HAU0946496.1"
                     /translation="MDINQNLGNLMKEAQKMQQRMQEAQQQLSQLVVSGESGGGMVTI
                     KMNGRHDVTEVKIKPTLMDEDIEMLEDLIAAAVNDAVRKIEKASKEKISQLTAGLNIP
                     TDLMGDKEGE"
     gene            2276..2875
                     /gene="recR"
                     /locus_tag="JBH85_09815"
     CDS             2276..2875
                     /gene="recR"
                     /locus_tag="JBH85_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HAU0946497.1"
                     /translation="MTMDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLAS
                     CLEQAMKHISHCQQCNNYTEQTLCALCQNPNRDSTLLCVVESPADVSAIEQSNSFQGK
                     YFVLMGKISPLDGLGPDDIGLPKLKELITREKIQEVILALSPSVESQTTIHFIHQLLK
                     DETVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV"
     gene            2868..3728
                     /locus_tag="JBH85_09820"
     CDS             2868..3728
                     /locus_tag="JBH85_09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF547 domain-containing protein"
                     /protein_id="HAU0946498.1"
                     /translation="MSKSIFILCRKKILVLLLLSLCFITSTASASFYRSLWPKWLVNT
                     PLSKQSISHQAWQHFLDHHVITNEEDINLVDYTNINEKELASLKEYIKNLSQIDIDNY
                     NRQEQLAYWINLYNALTVLTVANYYPIANIQEINISPGLFSVGPWGANIITIKNTNLS
                     LDDINNRIIRPIWNDPRTHYALNNATIGAPNLSKQAYQGPLLEQQLNDAAFKYINSLR
                     GVHVIEGKLIVSKLYDWYEEDFGGTKKYVIKHLLQFAKEPLRNQLKHINTIDSYIYNW
                     HINCPADNQS"
     gene            3725..5722
                     /locus_tag="JBH85_09825"
     CDS             3725..5722
                     /locus_tag="JBH85_09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HAU0946499.1"
                     /translation="MKKKHLIFAYFSQFLLFNLCFFGLQLLLLYSHAESLISSIKLPL
                     PIYFEIIGTLVIQFSLYIIISMIQALLLIGILNRSWHYFSTEQWQIIIWSLFACAILS
                     ANAYYFPLSVFSKLFSPPIPEFIFLILLYFSLACLGLLLLNCLFYRTTARLLSIALPI
                     GICIFLLNNYWKSSLNPNVDSEPNVIILGIDSLSPESVTSRNMPFLHQVLLDSFQFTN
                     TISPLARTYPAWSSILTGLYPKHHLAEENLVERSRVKSQLSIVWDLNKLGYNTIYATD
                     DRRFNSIDENFGFKKIIGPKTGVNDVMLGSYNDFPLGNLLVNFRISSWLFPYNFSNRA
                     SFISYYPETFTNELKRELSLQQNSPVFLAVHFALPHWPYAWAASLPDQVENEFSLSKR
                     DALYLRALKAVDNQFKVIFCYLKKHGYFKNSLVIILSDHGEVLYYPNSRLTSYQKYQS
                     SLTSKLAEYFKAKTATELDKSAGHGSDILSPMQYHSLLAFNVYKDGKLLTKTNKIKTR
                     VALFDLAPTILDFLNITKKQKMDGISLLPTVLNPDTPLPHRTFFIESGMYPNQDFTKE
                     KAIELGKKIYKVNPDTGQLELKPDELIQVNNQKLYGVISGNWILALYPDDNTYIPVIL
                     NLSTGEWIDNLQSDFAKSSPAEKLKRQLQEFYGKKLAYPIQ"
     gene            complement(5959..7443)
                     /locus_tag="JBH85_09830"
     CDS             complement(5959..7443)
                     /locus_tag="JBH85_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946500.1"
                     /translation="MLEEKGMTQKTLTLPNGFVTDNDRAKARIKYELKQLETQLGKCV
                     KQPDDTAFSKNKHSLYMALADKYSEYLKLIDIDSKFKQFVGVEIPKDISYPEACNRIM
                     HLKQKRSAAVNLLEEAKIIIEISSLYQCLAKAIEPNEVSDVSNHLILNQFDKLKQLFK
                     KENLELWLSTLVDLWNHNSTLLREPAKLFRNWDLEEQTIALCFFSESEVVNLVNAIFF
                     YKLYPDKLFNELIHPEKLVSVRMRLGFLHEFIELLQKQLHSNALQYGLNPGIDFLFHG
                     EELPQGIMIEVNEVYRDIIQLAVKNLRVQFTPENNEKVTLERLHDLGRAYKFWFNPNR
                     LIDAVMVLQQRLVKESISQEEDLEKFHQEMLVLYRQLTTTECLDLYGYFANNDSRYLL
                     YTLYSINNGYSLDWLPSLNSSERNAIARVYQALKCVMEALRVELKNRFITTEPYLYDL
                     GKKEIHTGRRNREAVFRIIAIYGCERIVMSDSLERLFNLIEEPN"
     gene            7645..8373
                     /locus_tag="JBH85_09835"
     CDS             7645..8373
                     /locus_tag="JBH85_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAU0946501.1"
                     /translation="MMSQRHYLLFIDNEPVSEELKDYFEKFNLDIIQQKKLFPIHVEK
                     GLPTAILINWSILRAEPEVIEQFYNMYPVPLIVINNKPDEESSVAMLEAGADDFMTKP
                     IYPRELHARIGAISRRVMRAQQKLDHGKEVLMFANWRLYPASRQVFGENNEELQLSAG
                     EYDLLLTFVQQPQRVLDREFLLQITKNTDLVPFDRRIDVQISRLRQKIEIDKKKPALI
                     KTIRNGGYMFTGRVVTLKESDATL"
     gene            complement(8596..9258)
                     /locus_tag="JBH85_09840"
     CDS             complement(8596..9258)
                     /locus_tag="JBH85_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946502.1"
                     /translation="MQHMESVMKEQFFQTKDLNTLLRSVEKPIQDLLELNFKTLKTVS
                     YVTPIELFNVLKPEEVLEKNMNVFIQNSQKAMSYMLNVFQIMEHHWINIYDQMAENPN
                     EKKANPAIDKANRKVDTSTPKSSASKKAVTAKGKTKPAAVQSKAKTSKAKPKISSPIK
                     VKTNTQERPAAVKQQSQMPLSSLQKDMEKQGINTPVALKNSVAILKNETKDIVPSNNK
                     LK"
     gene            complement(9515..10231)
                     /locus_tag="JBH85_09845"
     CDS             complement(9515..10231)
                     /locus_tag="JBH85_09845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HAU0946503.1"
                     /translation="MKILYVPFSRHQAGDLKSMVELWKKNDEQFSPDRIEIIYFNDDI
                     NYDQLDEKIEIYICAHGSDDDNVTKLFNHSNPLVAESLDIKEVAERFERDILPISYWI
                     STIHLYCCGTNNKNQMMAELLGHSLLRPEKPIYHYSGSVSIVDEYGKQWSFANHVKIP
                     VHLVAKRIFVLNFFDEEQPHRAFVKKAFQSKTYKELLAKKEDSFFAKVKENRASVLLS
                     KRLGKKSQDGEENSLLRKGN"
BASE COUNT         3283 a         2010 c         1733 g         3211 t
ORIGIN      
        1 aatttgtatc ctttaggaaa gtgggcacac tcaaataata aaatagtcat tagctctagc
       61 gcaggaatat tttttttgtt actcttcgct attcaaatat ggtgactcta ttggtcccct
      121 cgcgacgata gattgtgaac cccgtcaggc ccggaaggga gcagcggtag cagttgatgc
      181 gggcgccggg gtgtggctct tagagtcgcc gcccaacttg tgaaacacgt atgagctatc
      241 tggcacttgc ccgtaaatgg cgaccacgca cattttccca actggttggc caagagcata
      301 ttaataaagc actgatcaac gcgctgaatc aacaacgttt gcatcatgct tatctattta
      361 ctggtactcg cggggtcggg aaaaccagtg ttgcccgtat tttagctaaa gccctcaatt
      421 gtgaaaaagg catcacttca gaaccatgcc ttcattgcga tacctgtatt gccattgagc
      481 aaggccgtta tattgatctc attgaaatag acggagcctc caaaaccaga gttgaggaca
      541 cgcgagattt acttgacaac atacaatatg caccgacaaa tggccgtttt aaagtttatc
      601 taattgatga agtgcatatg ctatcccaac atagctttaa tgctttacta aaaacattag
      661 aagaaccgcc ttcacatgta aaatttattc tggcaacgac tgacccacaa aaattacctg
      721 ttactgtctt atcgcgttgt ttgcaattta atctaaaaca cttgcctgct gagttgataa
      781 atcaacaatt gcaattaatt ctccaagagg agcgcttgga ttttgaaata caagcgctag
      841 acatattagc tcaggctgcc cgcggaagca tgcgcgatgc attaagttta ttggatcagg
      901 ccattaccag ttgtgaaacg aaattactgg caagtgatgt aaaaatgctc ttgggacata
      961 cccaacaaga ttacgcgttg ctgctcttgc aagccctggc aaagcaagaa gcgccaatca
     1021 tgcttgtatt aagtcagcaa atcattgccg aaggagggaa ttttcaatac gttcttgatg
     1081 aaatacttag ctatctgcat caaattaccg tatatcaatg cctgggcgac aacaatccat
     1141 taattagtcc aaaagcagaa attaaagaat tagcaaaaca gttttcggcc gcggacacac
     1201 aattattcta tcaaataggt attaagggac gtgaggagat gcatctcgcc cctacactgg
     1261 ccattggctt taatatgacc atgctgcgca tgtatacctt taaaccagct tctcatgtaa
     1321 caacacctcc attagcattc gagcaaaata ataaaacatg ctcactaatt gttgatgata
     1381 atacaccagc gcaaaaccct attggaattg aaccaatacc cgttattaaa gcgacggaca
     1441 acaccgttgc ctatcagcag acccaatcat tatcaacaga cgataaaaaa tctgctaact
     1501 ctggtgagtc catgagctgt gactggaacg aaataatacc acagttaaaa ttatcgggtt
     1561 tagcacttaa tgccatagaa aatgcagaat ttcttggtaa aaaagagcga gaaattacat
     1621 tcggagtaca taaaggtcac cagtccttat tcacccccac aacaattaac cgaattgaaa
     1681 ccgcattggc tggttattat aaaagcccag taaaaattat tttaaacact caagatgccg
     1741 tgcatgcctc tccagctcaa caaaaagaga aagctagcca agaaaagcta gaacaagcag
     1801 aggcagcatt acacgctgac ccagtatttc aacagttgca acaagaattt tcagcagaat
     1861 tggtcaaaaa ttctattgtc ctgttaaaag atgacttata atacttaaac taaccataaa
     1921 tagacgaggc tgtaatggat attaatcaaa atttaggcaa tttaatgaaa gaagcgcaaa
     1981 aaatgcaaca acgtatgcaa gaagcgcagc aacaattaag ccagttggtc gtaagtggag
     2041 aatcaggtgg tggtatggtt actattaaga tgaatggacg tcatgatgtc actgaagtta
     2101 aaatcaaacc cactttaatg gatgaagata ttgaaatgct ggaagatcta attgctgctg
     2161 cagtcaatga tgcagtgcgt aaaattgaaa aagcatccaa agaaaaaatc agccaactga
     2221 ctgctggact taatattcca actgatttaa tgggtgataa agaaggagag taaccctgac
     2281 tatggatgct ctaagccgat tggtagaggc gcttcgctgt cttcccggtg tgggaccaaa
     2341 atcagcacaa aggatggtgt tccatttatt gcagcaccaa aggcagcgag gtttacacct
     2401 tgcctcctgt ttagaacagg caatgaagca cattagtcat tgtcagcagt gtaataatta
     2461 caccgaacaa acactgtgtg ctctttgtca aaatcctaat cgagattcga cattgctttg
     2521 tgtggtagag agtccagcag atgtttctgc catagaacaa agcaattcct ttcaaggtaa
     2581 gtattttgtc cttatgggaa aaatttctcc tcttgatggc ttgggacctg atgacatagg
     2641 tctaccgaaa cttaaggagt taattactag ggaaaaaatt caggaagtta ttcttgcatt
     2701 aagccccagt gttgaaagcc agaccacaat tcattttatt catcagttgc taaaggatga
     2761 aaccgtcaat atcagtcagt tagcacatgg aataccatca ggtggtgaat tagaattttt
     2821 agatgggaat actataagca gtgcccttaa gaacagagct gtgattaatg tctaaatcca
     2881 tatttatttt atgcagaaaa aaaatactgg tcttactcct gttatcctta tgtttcataa
     2941 caagtacagc ttctgcttcc ttctacagaa gtttatggcc caaatggttg gtcaataccc
     3001 ctctttccaa acaatcaatt tctcatcagg catggcaaca ttttcttgat catcatgtaa
     3061 taactaatga agaagacatc aatctggtag actataccaa tatcaatgag aaagagttgg
     3121 cttcactaaa agaatatata aaaaatttat cgcaaatcga tattgataat tataaccgtc
     3181 aagaacaatt ggcttattgg atcaatttgt ataatgccct tacagtatta acagtagcca
     3241 actattaccc cattgcaaac attcaggaaa ttaacatttc tcccggatta tttagcgttg
     3301 gaccttgggg agctaatatt atcacaatca aaaatactaa cttatccctg gatgatatca
     3361 ataatagaat tattcgccca atttggaatg acccaagaac tcattatgct ttaaataatg
     3421 ccaccatagg agctcctaat ctgagcaaac aagcatacca agggccattg ctggagcaac
     3481 aacttaacga cgcggcattc aaatacatta actctctcag gggagttcat gtaattgaag
     3541 gtaaattaat tgtttctaaa ttatatgact ggtatgaaga agattttggt ggtaccaaaa
     3601 aatatgtcat caaacatttg ctacaattcg cgaaagaacc tctgcgtaac caattaaagc
     3661 atattaatac tattgatagt tatatttata actggcatat taattgtccc gcagataatc
     3721 aatcatgaaa aaaaagcatt tgatttttgc atattttagc caattccttt tatttaatct
     3781 ttgctttttt ggcttgcaat tgcttctact ctattcgcat gctgagagcc taatcagttc
     3841 gattaagctt cctttgccaa tctattttga aattatcggc actctcgtaa ttcaattcag
     3901 cctgtatatc atcatttcca tgattcaagc tctgttgctt ataggcattt taaatcgatc
     3961 ttggcattat ttttctactg agcaatggca aatcattatt tggtctttat ttgcgtgcgc
     4021 tatattaagt gctaatgcct attatttccc tctgagtgtt tttagcaaac tattttcacc
     4081 accaattcct gagtttattt ttttaatatt actttatttt tctttggctt gcctggggtt
     4141 actcttatta aattgcttgt tttatcgcac gactgctcgc ctattatcaa tagcgctacc
     4201 cattggcatt tgtattttcc tattaaataa ttattggaaa tcttccttaa atcctaatgt
     4261 tgattccgaa cccaacgtca ttattctggg catagacagc ttaagtccag aaagtgtcac
     4321 atctagaaac atgccttttc ttcatcaagt gctactggac agttttcaat ttacaaacac
     4381 gattagtcct ttagccagaa cctatcccgc ttggagctcc attttaactg ggttataccc
     4441 taaacatcat cttgccgaag aaaatttagt tgagcgaagc cgggttaaaa gtcaactcag
     4501 cattgtgtgg gatttgaata aattggggta taacacaatc tatgcgactg atgatagacg
     4561 atttaatagc atagatgaga attttggatt taaaaaaatc atcggcccaa aaacaggtgt
     4621 caatgatgtc atgttaggct cttataatga ttttcctctt gggaatttac tggttaattt
     4681 tcgcattagt tcctggttat tcccctataa ctttagtaat agagccagct tcatatccta
     4741 ctatccggaa acctttacaa atgaattaaa aagagaactg tctttacaac aaaattcccc
     4801 tgttttcctt gcggtgcatt tcgctcttcc acattggcct tatgcctggg cagcatcatt
     4861 gcctgatcaa gtggagaatg aattcagcct cagcaagcgt gatgcgcttt acctaagagc
     4921 actaaaagca gtagacaatc aatttaaagt cattttctgc tatttaaaaa aacatggcta
     4981 ttttaaaaac agcctggtca ttatactaag cgatcatggt gaagtacttt attatcccaa
     5041 ctcacgattg acaagttacc aaaaatacca aagctcacta actagcaaac tcgcagagta
     5101 ttttaaagcc aaaactgcaa ccgaactgga taaaagtgct ggccatggtt ctgatatatt
     5161 aagccctatg caatatcata gccttctggc atttaatgtt tataaagatg gaaagctact
     5221 tacaaaaaca aacaaaatca aaacaagagt cgcattattt gatttggccc caaccatttt
     5281 ggacttcctg aatattacaa aaaaacagaa aatggatggc atttcattac tacctactgt
     5341 attaaaccca gatactccac taccacaccg cacattcttt attgaaagtg gaatgtatcc
     5401 aaatcaagat tttactaaag aaaaagccat tgaattagga aaaaaaatct ataaggttaa
     5461 tccggatact gggcaacttg agttgaagcc tgatgaatta atccaggtga ataatcaaaa
     5521 gctatacgga gtcattagtg gaaactggat tttagcccta tatccagatg acaacaccta
     5581 catccccgtt attctcaatc tttcaactgg agaatggatt gataacctgc agagtgattt
     5641 tgccaaatct agtccggcag aaaaactaaa gagacaactt caagagttct atggtaaaaa
     5701 actggcttat cctattcaat aaaagcgctt tataaagctc actgcaaagc ccccatacaa
     5761 aacagcagac ctcttttatt ttgcttcaga gcaaggcaga agcaaagttt atatgcagta
     5821 aatgagcgcc gcagaaacgt ttgcaatgca gcagtaaaat gaaagaagca agttataaaa
     5881 gaggttgggt atatcccaaa aaacgaatta ctcttagtca attggcacct gaaaaattca
     5941 tatttaccac tcaaattgct aatttggttc ttcaatgaga ttaaacaatc tttctaatga
     6001 gtcactcatc actattcttt cacaaccata aattgcaatg attctaaata cagcctctcg
     6061 attacgtctt cctgtatgaa tttccttttt ccccaaatca tatagataag gttcggttgt
     6121 gataaatctg ttttttaatt cgactcttag cgcctccata acgcacttca acgcttgata
     6181 cactctggct atagcatttc tttcagatga atttaatgat ggcaaccaat ctaaagagta
     6241 accattgttt attgaatata aagtataaag taaatatcga ctgtcattgt tggcaaaata
     6301 accatataaa tccagacatt ctgttgtggt gagctgacga tatagaacta gcatttcttg
     6361 atgaaatttt tctaaatcct cctcttgaga tatactttcc tttaccagac gttgctgcag
     6421 aaccatcaca gcgtcaatta gcctattagg attaaaccaa aatttgtatg cccttcccaa
     6481 atcatgcaaa cgttccaggg taactttctc attattttca ggtgtaaatt gcactctaag
     6541 gtttttaaca gctaattgga ttatatctct ataaacctca ttcacttcga tcataatgcc
     6601 ttggggtagt tcttcaccat gaaataggaa atcaatacct ggatttagcc catattgaag
     6661 tgcattgcta tgtaattgtt tttgtagaag ttctataaat tcatgcaaaa aaccaaggcg
     6721 catacgtact gaaaccaatt tttcaggatg aattaattca ttaaataact tatcaggata
     6781 caatttataa aaaaatatag catttactaa attaacaact tcagattcag aaaaaaaaca
     6841 taaggctatc gtttgttctt caagatccca attgcgaaat aacttggctg gctcccttaa
     6901 taaagtagaa ttgtgattcc aaagatcaac cagagttgat aaccataatt caagattctc
     6961 tttcttaaat aactgcttta gtttatcaaa ttgattcagg attaaatgat tgcttacgtc
     7021 tgaaacctca tttggctcaa ttgctttagc aagacattga tacaatgatg atatctcaat
     7081 gataatttta gcttcctcga gcaaattcac tgctgcagac cttttctgtt tcagatgcat
     7141 aatccgattg caagcttccg gataactaat atccttaggt atctccaccc ccacgaattg
     7201 tttaaattta gaatcaatat ctattaactt caaatactcc gaatatttat ccgccaaagc
     7261 catgtaaagt gagtgcttgt tctttgaaaa ggcagtatca tccggctgct taacgcattt
     7321 gccaagctga gtctccagct gtttcaactc atatttgatt cgcgccttgg ctctgtcatt
     7381 atccgtaacg aacccatttg gtaaagtaag tgtcttttga gtcatccctt tctcctcaag
     7441 cattatcctg acacttgaac tttaacaata gcattgaaaa gaaatatttt cctaattttt
     7501 ataacgaaca aaatgcaaat tttgcaataa accaggtttt gcgctctaaa aagctctggc
     7561 aagcataaat atttaaaaat aattgcaagc aactgataaa cttgccaaaa ttaaagcaat
     7621 atattttttg acctttgagg caaattgatg tcacaacgcc actatttgct atttattgat
     7681 aatgagcctg tcagtgaaga actgaaagat tactttgaaa agtttaatct tgatattatt
     7741 caacaaaaga aattgtttcc tattcatgtt gaaaaaggat tacctacagc cattttaatt
     7801 aattggtcaa ttttaagagc tgaaccagaa gtaattgaac aattttataa tatgtatcca
     7861 gtgccattaa ttgttattaa taataaacct gatgaagaat caagcgttgc catgcttgaa
     7921 gccggtgctg atgattttat gaccaaaccc atttatcccc gtgagctgca tgcgcgaatt
     7981 ggtgctattt ctcgtcgagt aatgagagcg caacaaaaac tagaccatgg taaagaagta
     8041 ttaatgtttg ctaactggcg actttatcca gcctcccgac aagtgttcgg ggagaataat
     8101 gaagaattgc aattaagcgc cggtgagtat gatttgcttc ttacttttgt ccaacaaccg
     8161 caacgagtcc tggatagaga atttttatta caaattacca aaaatacaga cctggttcct
     8221 tttgaccgaa ggattgatgt ccaaattagt cgtttgcgtc aaaaaatcga aatagacaaa
     8281 aaaaagccag ctttaatcaa aaccattcgc aatggcggct acatgttcac aggtcgggtt
     8341 gtaaccctta aagaaagtga cgccacatta taattgatta ttatctggct gatttaagca
     8401 aattcgtctt acttattgag cactttttaa aaaccattaa ctgatatttg ctttattggc
     8461 acaatgcccg ccctatcctt tactagctag cattgcaccc tatcatgtct agcttttggg
     8521 tatcccggat ttatcaagta tcgtttgcta cttctcaaaa aagcgctcaa aacgaaaaca
     8581 ggataaagca ccagtttatt taagtttgtt attagaaggc actatatcct ttgtttcatt
     8641 ttttaatatc gcaactgagt ttttcaatgc aacaggcgta ttaatacctt gtttttccat
     8701 atctttctgc aaagaagata agggcatttg cgattgttgt ttgacagctg caggccgctc
     8761 ttgagtattt gttttaactt ttattggact gctgattttc ggtttcgctt tgcttgtttt
     8821 tgcttttgac tgtactgcag caggctttgt tttacctttt gctgtaacgg cttttttact
     8881 ggctgatgat tttggagtac tggtatctac tttgcgattt gccttgtcta ttgctggatt
     8941 agccttcttt tcatttgggt tttcggccat ctgatcatag atattaatcc aatgatgttc
     9001 cattatttga aatacgttca acatgtaact cattgctttt tgactatttt gaatgaatac
     9061 attcatattt ttttccagga cttcttctgg ttttaaaaca ttgaataatt caataggagt
     9121 aacataagac acagttttta atgttttaaa attgagttct aacaaatcct gaattggttt
     9181 ttcaacagat cgaagcaaag tatttaaatc ttttgtctga aaaaattgct ctttcattac
     9241 actctccata tgttgcaatg cacaaaaaca agattagctt aaaaaaataa tttgtcaaat
     9301 attaaatgcc attttcttgt aactccataa accagtccca tcgctaactg gcctcctttt
     9361 aaatcatttt tagcctctta ttataactct tggctacgac ataatcatat caaaatactt
     9421 actcttattc tgagttcaat ggttatcgca cttcacagaa tgtcttttgg tataacgaat
     9481 tgtcgcaaac tataatgtat caaaggtaaa aactttaatt accctttctc aacaaagagt
     9541 tctcttcacc atcctggctc tttttgccta atcgtttgga taaaagcact gaagctctat
     9601 tttctttcac tttcgcaaaa aaagaatctt ccttcttggc taataactct ttataagtct
     9661 tactttgaaa tgctttttta acaaaagctc tatgaggttg ctcttcatca aaaaaattca
     9721 gaacaaatat tcttttagct accaaatgca caggtatttt aacatggttt gcaaaactcc
     9781 attgcttccc atattcgtca acaatagaaa ctgacccact gtagtgataa atgggctttt
     9841 ctggtcttaa caatgaatgc cctaataatt cagccatcat ctgattttta ttattggttc
     9901 cgcagcaata aagatgaatc gttgatatcc agtacgatat aggtaaaata tctctttcaa
     9961 agcgttctgc cacttctttt atatcgaggc tttctgcaac taatggattg gaatgattaa
    10021 atagttttgt tacattgtca tcatctgaac catgagcaca aatatatatc tcaatttttt
    10081 catccaattg atcgtaatta atgtcatcat tgaaataaat tatttcaatg cgatcaggag
    10141 aaaattgctc atcgtttttt ttccaaagtt caaccattga tttcaaatca ccagcctgat
    10201 gccttgagaa aggtacatat aaaatcttca tctgttc
//
LOCUS       DACVWI010000108        10233 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.108, whole genome shotgun sequence.
ACCESSION   DACVWI010000108 DACVWI010000000
VERSION     DACVWI010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10233
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.108"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            20..901
                     /locus_tag="JBH85_09850"
     CDS             20..901
                     /locus_tag="JBH85_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphorylase"
                     /protein_id="HAU0946504.1"
                     /translation="MITPAELPINHRGAVYHLDLRTEEIADLIITVGDPGRVSLVSQH
                     FDKIEVQRSHREFVTHTGYLGTNRITVLSTGIGMPNIDIVMNELDALANIDLSTRTVN
                     TTKKSLTIIRLGTTGALTENCLPGDIAISRYAIGFDSLIDYYQYQPLGVLETIKEELS
                     QYLKGESGPFYISESCSQLAEQFSSLGHTGITATCGGFYGPQGRQLRLPLHYPNLIRQ
                     LGTFCTQNYSVINLEMETAAIYALGSMLGHKCLSLSVVINNRIHGSFAADVKSCLDSL
                     ITKSLANIKNILELSEA"
     gene            961..3576
                     /gene="gyrA"
                     /locus_tag="JBH85_09855"
     CDS             961..3576
                     /gene="gyrA"
                     /locus_tag="JBH85_09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HAU0946505.1"
                     /translation="MSKGYIQIMVYLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPD
                     VRDGLKPVHRRVLFAMSELSNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQ
                     PFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRMSKVAHALLADLDKETVDFSPNYDET
                     EFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNLTEVINACIALVDEPDTSLEDLME
                     IIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRARTEIETDESSGRQSIIIQELPYQV
                     NKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIELKRNEVADVVLNNLFAHTQM
                     QNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRRTIFELKKARSRAHLLEGLG
                     IALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLEKAGSNASRPDDLTEEYG
                     LHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLIKELLDILASPERLMQ
                     VIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSHQGYVKYQPITAYQ
                     AQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAYQLPQASRASRG
                     RPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPLNAFSRPRSNGIIAV
                     DLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARGVRGIRVEKDQAV
                     KSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERNGKVVRSLQV
                     TDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEELE
                     EAEDSSLNAEDSSDE"
     gene            3551..4657
                     /gene="serC"
                     /locus_tag="JBH85_09860"
     CDS             3551..4657
                     /gene="serC"
                     /locus_tag="JBH85_09860"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HAU0946506.1"
                     /translation="MLKTAVMNSRVFNFGAGPAMLPEEILKEAQEEFLNWRNTGMSIL
                     EIGHRTPEIISLLSTAEQSLRELLNIPKNYHVLFLGGAARAQFAMIPMNLLRPGDDAA
                     YFITGIWSKMAYHEANLLKKAYYLSSEEKEGFVSIPDYQKWELKSNTAYVYYTPNETI
                     NGVRFPYVPKTEGVPLVADMTSCLLSEPINIRQYGLIFAGAQKNIANAGLTVVIIHEE
                     LLQNQPEPVIPTMLNYKNHADHRSLYATPPVFNCYLASKMFEWIKKQGGIEELFQRNC
                     LKAAKLYQYLDSTDFYLTPVSKEARSIMNVCFSLYYPDLEQKFLDMANERGLKALKGH
                     RFTGGLRASLYNAMPMAGVDALIEFMSEFAKENG"
     gene            4663..5964
                     /gene="aroA"
                     /locus_tag="JBH85_09865"
     CDS             4663..5964
                     /gene="aroA"
                     /locus_tag="JBH85_09865"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HAU0946507.1"
                     /translation="MLNFISKPVGCLKGEITVPGDKSISHRSIIFGAIAIGTSVIDGF
                     LDGEDCIATLKAFQSMGVRIEGPDKQRVIIHGVGKYGLKQPQNIIDCGNSGTSMRLLA
                     GLLAAQQFDSQLTGDESLLKRPMLRISRPLSQMGADVTTQDGKPPIVIKGGKKLNGIH
                     YVMPEASAQVKSCLLLAGMYAEGQTKITENAVSRDHTERMLRTFSYPVQIQDGAIIID
                     CNGECHGTRLNIPGDISSAAFFIVAASITPGSDVLIRNVGINPTRTGIIHILTEMGAD
                     IRVLNQRAYGEEPVADLHIRYSQLKGIDIPASMVPLAIDEFPVIFIAAACAQGKTTLH
                     GAKELRLKESDRIGAMVDGLNQLGVHAEGFDDGILIEGGSIQGGEVNSRGDHRIAMSF
                     AIAGAVASAPVTIKNCANVATSFPSFVTTANMLHFQIEEYS"
     gene            5961..6656
                     /locus_tag="JBH85_09870"
     CDS             5961..6656
                     /locus_tag="JBH85_09870"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HAU0946508.1"
                     /translation="MMVFNNEVPVITLDGPSGTGKGTICHLVAKRLHWNMLDSGAIYR
                     VLAYAARKNSIEPNDIKKLTALARSLNLRFESSADNETKVILDDENVSQQIRSEQCGQ
                     DASQIAVIPEVRAALLERQRNFAQFPGLVTDGRDMGTVVFPNAVLKVYLYASAEERAN
                     RRYLQLQDNGINVSLAQVVEELAKRDARDTARTHAPLKPAEDAVLIDTTGLTIVQVFN
                     IVLKLIDERLNNL"
     gene            6722..8398
                     /locus_tag="JBH85_09875"
     CDS             6722..8398
                     /locus_tag="JBH85_09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HAU0946509.1"
                     /translation="MSESFKELFEQSIAGAQFYPGAIITAKVIDIDDDFVTLNAGLKS
                     EGIVAVEEFYDKNGELEVKVGDTVEVALDSVEDGHGETLLSREKAKRQEAWRKLSKCH
                     ENNETVTGLISGKVKGGFTVEIGSIRAFLPGSLVDVRPVRDPSYLEGKELEFKVIKMD
                     LKRNNIVVSRRAVVEEESSADRQALLESLHDGQELHGIVKNLTDYGAFIDLGGIDGLL
                     HITDISWKRVKHPSEVLSVGQDVKVKVLSFDSERNRVSLGMKQLGNDPWVDLVERYPI
                     GKRLQGKVTNITDYGCFVEIEEGVEGLVHMSEMDWTNKNVHPSKVVSLGDVVDVMVLE
                     IDEERRRISLGMKQCVGNPWQQFASTHNKGEKVKGKIRSITDFGIFIGLDGDIDGLVH
                     LSDISWTVPGEEAVKQFKKGQELEAVILAIDPERERISLGLKQLEGDSFASFAETYTK
                     GSIVKGTVTAVEPKTVTVALAEDVSGTIRVSELSDERVDDATTIVKVGDEVEAKITNI
                     DRKNRTISLSVKAKDAQDEADAIKKYSRTEAASTTLGDLLKEKMASKEGE"
     gene            8511..8801
                     /locus_tag="JBH85_09880"
     CDS             8511..8801
                     /locus_tag="JBH85_09880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapA family protein"
                     /protein_id="HAU0946510.1"
                     /translation="MRILMLVTYLLLIIIGVSFAALNASSVQVNFYFKTVSMPISVLM
                     TIMLGVGVFIGFVLFITRYWRLKIECRKMKNQLKLTEKEIKNLRSIPLQDQH"
     gene            8848..10017
                     /gene="lapB"
                     /locus_tag="JBH85_09885"
     CDS             8848..10017
                     /gene="lapB"
                     /locus_tag="JBH85_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HAU0946511.1"
                     /translation="MINLWPLLLPAAAWSGWWLANRSNSNKDAHVHNRLSREYVVGLN
                     YLLNEQSDKAVDVFIKLLEVDSDTVETHLALGSLFRRRGEVDRAIRIHQNLIARPQLS
                     IQQRKEALMALGQDYMSAGVFDRAERIFLEVVELGGSRDTSSLQGLLAIYQQEKAWEK
                     ALDIIKKLEISTGASFHNQAAHYYCEMASQALKINAMDRAIYCIKQAMNVDPESVRAS
                     LMNATIEIKEGRYKQAIRSLKRVPQQDAEFLTEIIEPLVLCHKELDSMPDCIHYLEQT
                     LEKHPRASVIFVIADYLRQNKGMDIAIDFVADNLSKHPSIRGLNRLIYWHLESAHGKV
                     REKLQMLYDITSKFLDNKPIYRCGHCGFGGKHLHWHCPSCKQWGRMKPIHGLEGD"
BASE COUNT         3167 a         1684 c         2337 g         3045 t
ORIGIN      
        1 aggaataata gaaaaaaaaa tgataactcc agccgaatta cctatcaatc atcgtggtgc
       61 ggtatatcat cttgatttaa gaacagagga aatagctgat ctcatcatta cagtgggaga
      121 ccctgggcga gtaagcctgg ttagtcaaca ttttgataaa attgaagtgc aacgctccca
      181 ccgagaattt gttactcata cagggtatct gggaactaat agaattacag ttctctcaac
      241 tggaattggc atgccaaaca tagatatcgt gatgaatgaa ctggatgctt tggcaaacat
      301 cgatttatct acacgaacag tgaataccac caaaaaaagt ttaacaataa ttcgattagg
      361 cacgacagga gctctgactg agaattgttt gcccggagat atagccatta gtcgatatgc
      421 aattggtttt gatagtttga ttgattatta tcaatatcag ccactgggag tgcttgaaac
      481 aatcaaggag gaattatctc aatatttaaa gggagagagt ggtccgtttt atatttctga
      541 atcttgctct caattagctg aacagttcag ctccttggga catacaggaa ttactgctac
      601 ttgtggtggt ttttatgggc cgcaaggtcg ccagttaaga ttgccgcttc attaccccaa
      661 ccttattaga cagttaggaa cattttgcac tcagaattat tcagtaatta atcttgagat
      721 ggaaactgct gctatctatg ctcttggcag tatgcttgga cataaatgcc tatccttaag
      781 tgtggtgatt aataacagga tacatggaag ttttgcagca gatgtgaaat cttgcctgga
      841 ttccctgatc acaaaatcac tcgcgaacat taaaaatatc cttgagctat ccgaagctta
      901 aggtgattta attaagacgc ccagtgtggt atccttttgc attaaattaa tcttaattta
      961 ctgtctaaag gatacatcca aattatggta tacctagcca aagaagtctt accagtcaac
     1021 atagaagacg aattgaagca atcctatttg gattatgcga tgagtgtcat tgtgggtcga
     1081 gcattacctg atgtacgtga tggtttaaag ccagtacaca ggcgagttct ttttgcgatg
     1141 agtgagttaa gtaatgattg gaataagccg tataaaaaat ctgctcgtgt agtaggggat
     1201 gtcattggta aatatcatcc tcatggggat acagctgttt atgacactat tgttcgtatg
     1261 gctcagccct tttccatgcg ttatatgctg attgatgggc agggtaattt tggctctgta
     1321 gatggagatg ctccagctgc catgcgttac actgaagtaa gaatgtccaa agtggcgcat
     1381 gctttactgg ctgatttgga taaggaaacc gttgatttta gtcctaacta tgatgaaaca
     1441 gaatttgctc cagtggtatt gccatcgaga attcccaatt tactagttaa tggctcttcc
     1501 ggtattgcgg tagggatggc tactaatatt ccaccacata atcttaccga agtaatcaat
     1561 gcatgtattg ctttagtgga tgaacctgac acgagtcttg aagatttaat ggaaattatt
     1621 cctggccctg attttcctac agccgcaatt attaatggtc gtgctggaat tattgaaggt
     1681 tatcgtactg gaaaagggcg ggttgttatc agggcacgca cagaaattga aacggatgaa
     1741 agttcaggcc gtcagtcaat tattattcag gaattaccct atcaggtgaa taaagcgcgt
     1801 ttgatcgagc gtattgctga attggtaagg gacaagaaaa tcgaaggaat ttccggcttg
     1861 agagatgagt cagacaagca aggaatgaga gtagtcattg aattaaaacg caatgaagta
     1921 gcagatgtgg tattgaataa cctgttcgct catactcaaa tgcaaaatgt attcggaatt
     1981 aatatggttg ctctggtgga tggccaaccg cgtactttga atttgaagca aatactggaa
     2041 tattttataa aacatcgaag agaggttgtt accagacgca caatatttga attgaaaaaa
     2101 gccagaagtc gagcccattt attggagggc ttgggaatcg ccttagctaa tatcgatgaa
     2161 atgatcgcat taattaagca atctcctact cctcaagacg caaaaagtgc tttattaagc
     2221 aaaatatggc aacctgggtt ggtaaaggcc atgttggaaa aggctggctc aaacgcgtca
     2281 aggcctgatg atttaactga agagtatggt ttgcatgaga gcggatataa attatctgaa
     2341 gcgcaggcac aagcaatact tgaattaaga ttacataggc taacagctct tgaacaagat
     2401 aaaataatta atgaatttga agagctattg aatttaatta aagaattact tgatatattg
     2461 gcttcacctg aaagacttat gcaagttatt cgtgatgaat tgatagagat taaatcccaa
     2521 tttggtgatg agagacgaac ggaaataaca gcctcacaag aagatttgac tattgaagat
     2581 ttgattaccg aagaagatgt tgtggtcact ttatctcatc aaggttatgt aaaatatcag
     2641 cccattacag cctatcaggc tcagcgccga ggtggcaaag gcaaatcggc aactcatgtc
     2701 aaggatgagg attttgttga gcgtttggtt attgcgagta ctcatgacac cttattatgt
     2761 ttctccaatc atggcaaatt atattggcta aaagcatatc aattgcctca agcaagccgc
     2821 gcttcgagag gaaggcctat aatcaatatt cttcctttgg cagaaggcga agagattaat
     2881 gctatgctcc ctgttcgtga gtataaagac ggcagctacg tgtttatggc aaccaagaag
     2941 ggaacagtta aaaaagtgcc tttaaacgca tttagcaggc cgcgttccaa tggtattatt
     3001 gctgtggacc tggaagaaga tgacagtctc gttggagttg atattactga tggtgctcgc
     3061 gatattatgt tgtttactga tgcaggcaaa gtaatccgct ttgatgaaag taaagtgcga
     3121 cctatggggc gcacggctcg aggagttcgt ggaattaggg tagaaaagga tcaagccgtt
     3181 aaatctcttg tggtagtcga tccaagtgga ggcaccattt tgacggcaac tgaaaacggc
     3241 tacggcaaga gaactcatat tgatgaatat cgagtgtcag gacggggcgg gcaaggtgtt
     3301 atttccattc aggttactga acgaaatggt aaagtggtcc gctccttgca ggttaccgat
     3361 aatgacgaag ccatgttaat tacagataaa gggactttgg ttcgttttaa agttaatgaa
     3421 ttatctgtga taggccgaaa tacacaagga gttcgtctga ttaacgtcag ttctggtgag
     3481 gcagttgttg gaatgcaaaa aattgtagat cttggagaag aattagaaga ggcagaagat
     3541 tcatccctta atgctgaaga cagcagtgat gaatagcagg gttttcaatt ttggagctgg
     3601 ccctgccatg ctgcctgagg agatattaaa agaggctcaa gaggaatttc ttaattggcg
     3661 taataccggc atgtctatac ttgaaatagg gcatagaaca ccggaaatca ttagtctttt
     3721 aagtactgca gagcaatcgt taagagagct gttaaatatc ccaaaaaatt atcatgtatt
     3781 atttttgggg ggggcagctc gggcacaatt tgccatgatt cctatgaatt tattacggcc
     3841 aggagatgat gcggcttatt ttattacggg aatctggtct aagatggctt atcatgaagc
     3901 gaatcttcta aaaaaagcat attaccttag cagtgaagag aaagaaggat ttgtatcaat
     3961 tcctgactat caaaagtggg agttaaaaag taatacagcc tatgtctatt ataccccaaa
     4021 tgaaacaatt aatggagtca gatttcctta tgttcctaaa acagaaggtg ttcctctagt
     4081 tgcggatatg acttcttgct tgctgagcga gccgataaat attaggcaat atggtttgat
     4141 ttttgctggt gcgcagaaga acattgccaa tgcaggttta actgtagtta tcattcatga
     4201 ggaattacta caaaatcaac ctgagccagt gattcctacc atgttgaatt ataaaaatca
     4261 tgctgatcat cgctccttat atgctacacc cccagtattt aattgttatt tggcaagtaa
     4321 aatgttcgaa tggataaaaa aacaaggggg tatagaagaa ttatttcaga ggaattgttt
     4381 gaaagctgcg aagctgtatc aatatctcga ttcaactgat ttttatttaa ctccagtatc
     4441 taaagaagct cgctctataa tgaatgtttg cttttccctg tactatccgg atttggaaca
     4501 aaaatttctc gatatggcta atgagcgtgg gttaaaggct ttaaaaggcc atcgtttcac
     4561 tggaggattg cgcgccagtt tgtacaatgc catgcctatg gctggagttg atgctctcat
     4621 tgagtttatg tctgaatttg caaaagaaaa tggttaataa gcatgttgaa ttttataagt
     4681 aaaccagtag gctgccttaa gggcgaaatc acagtacctg gagataaatc catttctcat
     4741 cgttctatta tttttggcgc gattgctatt ggaacttcag taatcgatgg ctttttagat
     4801 ggtgaagatt gcatagccac ccttaaagca ttccaatcga tgggtgttag gatagagggg
     4861 cctgataagc aacgtgtcat tattcatggg gttggtaaat atggtttaaa acaacctcaa
     4921 aatattattg attgtggcaa ctcaggcacc agtatgcgct tgctggctgg attgcttgca
     4981 gcacaacaat ttgatagcca gttaacggga gacgaaagtt tacttaaacg cccaatgtta
     5041 agaattagta gacccttaag tcaaatgggc gcagacgtta ctactcagga tgggaagccg
     5101 cctatagtaa tcaaaggcgg aaaaaaatta aatggaatac attatgttat gccggaagcc
     5161 agtgctcagg taaagtcgtg tttgttgtta gctggtatgt atgctgaagg acaaacaaaa
     5221 ataactgaaa atgcagtcag tcgggatcat actgaaagaa tgttaagaac attttcttat
     5281 ccagttcaga tacaagatgg tgctatcata attgattgta atggcgagtg ccatggaact
     5341 cgtctgaata tcccgggaga catttcatct gctgcttttt ttattgttgc agcttctatt
     5401 actccaggtt ccgatgtttt aattcgtaat gtaggtatta atcctacacg aactggcatt
     5461 attcatattt taactgaaat gggagcggac ataagagttt tgaatcaacg tgcctatgga
     5521 gaggaaccag ttgctgattt gcatatcaga tattcccaat taaaaggaat cgatattcct
     5581 gcctctatgg tgcctttggc gattgatgaa ttcccggtta tttttattgc agctgcttgc
     5641 gcacaaggga aaaccactct tcatggagct aaagagctgc gcttgaagga aagtgatcgt
     5701 attggcgcga tggtggatgg cttaaaccaa ttgggagttc atgctgaggg ttttgatgat
     5761 ggaatattga tagagggtgg aagtatacag ggtggtgagg ttaatagtcg aggagatcac
     5821 cgtattgcca tgtcatttgc cattgctggc gctgtcgcca gtgctcctgt aacgattaaa
     5881 aactgcgcca atgttgcaac ttcatttcca tcttttgtta ctaccgctaa catgcttcat
     5941 tttcagatag aggaatacag ctgatggttt ttaataatga ggttcctgtc attacgttgg
     6001 atggtccaag tggaacagga aaggggacaa tttgtcattt ggtagctaag agactgcatt
     6061 ggaatatgct tgacagtggt gctatttatc gtgttctagc ttatgctgct cggaaaaata
     6121 gcatcgaacc gaatgatatt aaaaaattga ctgctttggc ccgttccctg aatttgcgtt
     6181 ttgaatcatc tgcggataat gaaacaaaag taatacttga tgatgaaaat gtcagccagc
     6241 aaatccgcag tgagcaatgt ggtcaggatg cctcacaaat tgcagtgatt cctgaagtaa
     6301 gagcagcact gcttgaacgc cagagaaact ttgcccaatt tcctggattg gtgaccgatg
     6361 gacgcgatat ggggacggtg gtttttccaa atgctgtttt gaaggtttat ttatatgcaa
     6421 gtgcagaaga aagagcaaat agacgatatt tacagttgca agataatgga attaatgtta
     6481 gcctcgccca ggttgttgaa gaactggcta aacgggatgc aagggataca gctcgtacgc
     6541 atgcgccatt gaaaccagct gaagatgctg tcttgatcga tacaaccgga ctaacaattg
     6601 tacaagtgtt caatattgta ttaaaattaa ttgatgaacg tttgaataat ttgtagtttt
     6661 gaattggggg gaaggtgagt ggaattcatt cttccatttt tttactaaag agtttattaa
     6721 catgtctgaa agtttcaaag aattatttga gcaaagtatt gccggagctc aattttatcc
     6781 tggtgccatt attactgcta aagtcatcga tattgatgat gattttgtta ctctcaatgc
     6841 tggactaaag tcagaaggta ttgttgccgt agaagaattc tacgataaaa atggcgaatt
     6901 ggaagttaaa gtaggcgata ctgtcgaagt ggccctggat tcagtagaag atggtcacgg
     6961 cgaaacgctc ctttcaagag aaaaagcaaa acgccaggaa gcatggcgca agttatcgaa
     7021 atgccacgaa aataatgaaa cagtcactgg tttgatttct ggaaaagtca aaggtggttt
     7081 tactgtggaa attggctcaa tcagagcatt tttaccgggt tcccttgttg atgttaggcc
     7141 tgtaagagat ccatcttacc tcgaaggtaa agaacttgaa tttaaagtca tcaagatgga
     7201 tttgaaacgc aataatattg ttgtttctcg acgagctgta gttgaagaag aaagtagcgc
     7261 tgacagacaa gcactactgg agtctttaca tgatggtcaa gagcttcacg gtattgttaa
     7321 aaaccttacc gactatggtg ctttcattga tcttggcggc atagatggtt tgttacatat
     7381 cactgacatt tcctggaagc gagtcaagca tccaagtgaa gtattatcag taggtcagga
     7441 tgttaaagtc aaagtactaa gctttgatag tgaaagaaac cgcgtttcct tgggtatgaa
     7501 gcagttaggg aatgatcctt gggttgattt ggttgaacgt tacccaatag gcaagagatt
     7561 gcaaggtaag gtaaccaaca tcaccgatta tggttgcttt gtcgaaattg aggaaggtgt
     7621 agaaggttta gtccacatgt cagaaatgga ttggactaat aaaaatgttc acccaagcaa
     7681 agtagtgtct ctgggagatg tagtagacgt tatggttctt gaaattgatg aagaacgacg
     7741 acgtatttct ttaggcatga aacagtgtgt gggtaatcca tggcagcaat tcgcatctac
     7801 tcataataaa ggcgaaaaag taaaaggcaa gatccgttct attactgact ttggaatctt
     7861 tataggtctt gatggtgata ttgatggact agttcattta tctgatattt cctggactgt
     7921 tcctggtgaa gaagcggtaa aacaatttaa aaagggtcaa gagttagaag ctgttatttt
     7981 agcaatcgat ccagagagag agcgtatttc tctaggattg aaacaattgg aaggcgacag
     8041 ttttgccagt tttgctgaaa cttacacgaa aggatctatt gttaaaggta cagttacagc
     8101 tgtagaacct aaaactgtaa cagttgcgtt agcagaagat gtttctggca caattcgtgt
     8161 gagtgaatta tccgatgaac gtgttgatga tgctaccact atcgtaaaag ttggtgatga
     8221 agttgaagca aaaatcacta atattgatag aaaaaatcgc accatttcac tttccgtcaa
     8281 ggcaaaagat gcccaggatg aagcggatgc aattaagaag tactccagaa cagaggcagc
     8341 atcaactact ctgggtgatt tattgaaaga aaaaatggct agcaaagaag gtgaataacc
     8401 tttttaagtc aaaactaaaa aagcgtagaa ctatctacgc ttttttttat tttgagaaaa
     8461 agattatggt atgatggacg ttttagctta aggattaaag gaaatattca atgcgcatat
     8521 taatgctggt aacttatctg ctgcttatta ttattggtgt tagttttgcg gctctaaatg
     8581 cctcgtcggt tcaagttaat ttctatttta aaacggtgtc catgcctatc tctgttctta
     8641 tgactatcat gctcggagtt ggtgttttta taggttttgt tctctttatt acacgatatt
     8701 ggcgtttaaa aattgaatgt cgtaaaatga aaaaccaatt aaaactaact gaaaaagaaa
     8761 ttaagaattt acgttcaata cccttacaag atcaacatta attttattat tagtggaaac
     8821 tcgatatgca gagaggaaaa ttaatagatg attaatttat ggccactgtt gttacctgct
     8881 gccgcatggt ctggctggtg gctggctaac cgcagtaatt ccaataaaga tgctcatgtc
     8941 cacaatcgct tatcgcgaga atatgtagtt ggacttaatt atttattaaa tgaacaatct
     9001 gataaagcgg ttgacgtatt tatcaagctt ctagaagttg atagcgatac agtagaaacc
     9061 catcttgcac tgggtagctt gttcaggcgt agaggggaag tagacagagc tattcgtatt
     9121 catcaaaatt taatcgccag gcctcaatta agtattcaac aacgaaagga agccctaatg
     9181 gctttagggc aagattatat gagtgctgga gtgtttgacc gagctgaacg tatattcctt
     9241 gaagttgttg agttgggcgg gagtagagat acaagcagtc ttcaaggatt attagcaatt
     9301 taccaacaag aaaaagcttg ggaaaaagct ttagatatta ttaagaaact ggaaatttct
     9361 accggagcca gtttccacaa tcaagcagct cattattact gtgaaatggc tagtcaagcg
     9421 cttaaaatca atgcaatgga tagagcaatt tattgtataa agcaagcaat gaatgttgat
     9481 ccggaatccg taagagccag tttgatgaat gctacaattg aaataaaaga aggccgctat
     9541 aaacaggcta ttcgatcttt aaaaagagtg ccgcagcagg atgcagagtt tttaaccgaa
     9601 atcattgaac cattagttct ttgtcataaa gagctggact ccatgccgga ttgtattcac
     9661 tatcttgagc aaactttgga aaaacatccg agagcctctg taattttcgt tatagctgat
     9721 tatttgcgac aaaataaggg tatggatatt gcaattgact ttgtggctga taatttaagc
     9781 aaacatccat cgataagagg tttgaatcgt ttgatttatt ggcacttgga gtctgctcat
     9841 gggaaagtac gtgaaaaact gcaaatgctt tatgatatta ctagcaagtt tttagataat
     9901 aagcccatat atcgatgtgg gcattgtggt tttggtggta aacatttaca ttggcattgc
     9961 ccaagttgta aacagtgggg tagaatgaag cctatccatg gtttggaagg ggattaacct
    10021 gagacatact ctcagaaagt taatgaacag ttgcatatta gcttagtatc gtaattcaaa
    10081 tttgttattg caaattaagt aaaacaattc aaataggaaa tttaatttaa tttgatttgt
    10141 tttgtcttct cgtttgccaa ggcagtttac gttcaaatca gtttattgca actttagatt
    10201 tgtattaaga ttattcctta acttcatggt att
//
LOCUS       DACVWI010000109        10200 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.109, whole genome shotgun sequence.
ACCESSION   DACVWI010000109 DACVWI010000000
VERSION     DACVWI010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10200
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.109"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(382..624)
                     /locus_tag="JBH85_09890"
     CDS             complement(382..624)
                     /locus_tag="JBH85_09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946512.1"
                     /translation="MTNKILTERLNNELDELGVPCLMTERVQVCSKLFNLPKFKMEAL
                     LNGVIAIDANSIQKIADELEVNKDWLLGGIKKKTKH"
     gene            1088..1465
                     /gene="pieF"
                     /locus_tag="JBH85_09895"
     CDS             1088..1465
                     /gene="pieF"
                     /locus_tag="JBH85_09895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieF"
                     /protein_id="HAU0946513.1"
                     /translation="MKRLIICNGNKLTVCTQAISSGGIVEKYTPIFSLTKESDNELTL
                     ELSGVARGYYIIPSELTSSQARAAHLITLLTRAEESQTTDMHKILNSFVSGKITSGSM
                     FNFENDGSFKREPEEAYNLINKI"
     gene            1689..2108
                     /locus_tag="JBH85_09900"
     CDS             1689..2108
                     /locus_tag="JBH85_09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HAU0946514.1"
                     /translation="MKALYTTIAKAHGGRNGHVETTDGLLKLDLAMPRELGGEGGATN
                     PEQLFAAGYAACFESAIRHVANVQKISLEDVSMTSEVSLYATPEKGFKLGVALHAHIT
                     GLNQNEAEALVAKAHEVCPYSNAIRGNVDVKLSVSVK"
     gene            2142..2765
                     /locus_tag="JBH85_09905"
     CDS             2142..2765
                     /locus_tag="JBH85_09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HAU0946515.1"
                     /translation="MYTLYSFGTPNGFKPTIMLEELTQPYTIELIDITQGEQFNPDFL
                     KISPNNKIPVLHDQTNDFYLMESVAILQYLAEKHRQFLPETTKEKYTIIQWCYFQAAH
                     IGPMFGQFGHFHRYAQERVPYAMTRYADESMRLLGVMEKQLVKAPFIGGSNYTIADMA
                     IWPWIWCFQFIYGQTIDAKQFPSLMSWYQRISERQAVRATLTAYGRL"
     gene            3109..4719
                     /gene="pieE"
                     /locus_tag="JBH85_09910"
                     /pseudo
     CDS             3109..4719
                     /gene="pieE"
                     /locus_tag="JBH85_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095985.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieE"
     gene            4833..5726
                     /locus_tag="JBH85_09915"
     CDS             4833..5726
                     /locus_tag="JBH85_09915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014705879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
                     /protein_id="HAU0946516.1"
                     /translation="MLAPIVEIFCDIDDFCKAWFKEMSPYLLPSPNRKRQRPCRLSAS
                     EIMTVMILFHLSHYRTFKDYYRECVEMDMKSYFPKLVSYNRFVEIMSSVVTPLSAYLL
                     SHMGKKTGLYYVDSTTLKVCHNKRIHRHKTFAGIAERGKSSMGWFFGFKLHLVINHLG
                     ELIAFCITKGNVDDRQPLEQLFKNLHGLAAADKGYLSKKKEESLFQKGVKLITKVRRN
                     MKAKILSTFEKYFLGQRSIVETVIEQLKSICQIEHTRHRKPDNFVINLLSGLAAYMLK
                     PRKPSLKIHSLNKNLGLLMSS"
     gene            5729..6034
                     /locus_tag="JBH85_09920"
                     /pseudo
     CDS             5729..6034
                     /locus_tag="JBH85_09920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095985.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Dot"
     gene            6325..6567
                     /locus_tag="JBH85_09925"
     CDS             6325..6567
                     /locus_tag="JBH85_09925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946517.1"
                     /translation="MKTVLIFIIFLCSFQIQAACKCNCDPTDNKMCASQNDMEHPCPS
                     VCASAAPGMAPMFTACPVSKVTDPVTGVTRWVNMCN"
     gene            complement(6586..7350)
                     /locus_tag="JBH85_09930"
     CDS             complement(6586..7350)
                     /locus_tag="JBH85_09930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946518.1"
                     /translation="MGKFYMSKVKAKIIAFSTVMLFLTSINNYAKGETPMNQYHQTNE
                     ATMIKMKSKLSNSSEFEKFLESGGRLVKQTEPNTKVWFALKGNDNSLIIFDAFYDSKG
                     REAHFAGQVATALKNNSEKLVLGSWENGVLKNIVNSKVLASKLPEKSVPVTVANYIEF
                     TANDGKSEQLAALLINAAEIVDKTEPQTAYWFTLQINDNTFAIFDAFSDESGQKAHFS
                     GKVALSLKNHSGLLIKNGWEQGVLPNIQNLKVITNI"
     gene            complement(7393..7959)
                     /locus_tag="JBH85_09935"
     CDS             complement(7393..7959)
                     /locus_tag="JBH85_09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAU0946519.1"
                     /translation="MPMNISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASI
                     HYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFFDAILTLTYNSENK
                     MCLGGMFASDFQSLPVSIQNQAKKFFELIIEWLKGVLETNGYDNESSLSLAKQIISLV
                     EGGLLLARLYGDETFLEGVRHFIDQTIK"
     gene            8204..8431
                     /locus_tag="JBH85_09940"
     CDS             8204..8431
                     /locus_tag="JBH85_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946520.1"
                     /translation="MFFKRSNPHVTPQDLQKVIQNLNAQRELTERQLKEGSISQKTGQ
                     EEMQRLSSLIGAYQNNLMAALDDQQNTNCLK"
     gene            8768..>10200
                     /gene="pieD"
                     /locus_tag="JBH85_09945"
     CDS             8768..>10200
                     /gene="pieD"
                     /locus_tag="JBH85_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieD/LirF"
                     /protein_id="HAU0946521.1"
                     /translation="MIKDILNTIASLVEENVVVFASERGKQLLQKVKADLVSFKPINF
                     YALDAGKQITDALKLIESYCIEMNRIFDELNHQSSVSLANEKLTHKIKNILTNLKNKQ
                     NKITQLREKIPEGMLDIKRALYIVENSFLSESEPEEKELRSKFKRIKKFMSNSNKEYL
                     DLIKKGGLLNTVLLDTTTLYWNQLHEYSTLLNQCRITLQKSHHLTKEGQLALRCFNSA
                     IQKMPPKKHIINALKILNKPNSKTEAIEKIGFVSPHGREACMQLTCWGKKFFYIPRSE
                     EMYHFDYDPKEDLNETGGNCFGESMMFIHFLSKGAIRWLCPEAGLINFQLDQTRNLKF
                     KKATLGEGETLVSDNSPHDSLEWEDMRPVLLDNPYFKPGSLCGVIFSMNDYTKAKREF
                     TAGHMIVVAKLDTNLNPYKYIIYEKDFGAFGLTDDESLEYLISEQILPLYRGMNYSKI
                     KLVKYGEASTETYDLLNKIKPQTGIPQ"
BASE COUNT         3380 a         1747 c         1884 g         3189 t
ORIGIN      
        1 aactcattga tttaaacatt aaatgtaaga tttgatcagt atctgctgtt attgatttat
       61 acgccagcaa gtagtctgct ttttccttta attttgtagt aatgaggggg agtgcatgac
      121 tattaatttg cgccaaaatt tatcgtaaga ctgttttttt ggggtatgta agggtagaaa
      181 aaagcctgta cagtggagag attcaagatg ctattcgaaa aaaatcatcg actcctgtta
      241 ttccaggaaa atgcaattct aaaattggca acatgggtat ggattggtgt ctttataaat
      301 accgatattt tgagccaaac ctactgggtg ctgcggacaa agccgcagta cgtcagcggt
      361 cggagaaaat gtcaacagcc tctagtgttt tgtttttttc ttaatgccgc ccagtagcca
      421 atccttattc acctcaagtt catcggcaat tttttgtatc gagttggcat caatagcaat
      481 gactccattc aacaaggctt ccattttgaa tttaggcaaa ttaaatagtt tggaacacac
      541 ttgcacgcgc tcggtcatta gacatggaac accaagttca tccagctcat tgttcaagcg
      601 ttcagttaag attttgttag tcatggtatt ctccttctcg ttttatatca gtgtaaaaca
      661 ctaaagctta aggattgatt aacaaattaa tttttatcag ataattaatt gaaagcatga
      721 tcccggtctc taaaaataga aaaaatctga cggtgaacga tttggttatt tgaaagggat
      781 atcaacttga gtagataaaa caggctctat tatattgcag gccaaacact gagtctggtt
      841 gttatctatt ttcaagcaag ttatcaattc ctgaaacgtt tgtgtcttgc cctaaaacaa
      901 cgtaataaga ttatacgaga cgcctattct atcaaaatta attcaattca tcgtgccatc
      961 ttttagtctt attgattttt gccaattcta atagttttaa tttaaataca aaagatcaaa
     1021 tatttactgt ttagttttat ttttatataa tcaaagccct ttatttttct aaaatgtgag
     1081 ctaactaatg aaaagactaa ttatctgtaa tggcaataaa ttaacagtat gtacacaagc
     1141 gatttcttct ggtggtatag ttgagaaata tacacccatt ttcagtctta caaaagaatc
     1201 cgacaatgag ctcacattag aattgtctgg agttgctaga ggatattata tcattccttc
     1261 ggagctaacc tcttctcagg caagagcagc gcatcttata acacttctta ctcgggcaga
     1321 agaatctcaa actacggata tgcataaaat acttaactca tttgtttcgg gaaaaatcac
     1381 gtcaggcagc atgtttaatt ttgaaaacga cggttcattt aagagagaac ctgaggaagc
     1441 atataactta ataaacaaaa tttgataagc tatccaggcc aaggatggct ctatattttc
     1501 tgattattga gactaatttt cttagtttgt aactaattta agtttgtatt gtcttttcct
     1561 tgcttatcaa gactgttttc tttccaggcg cgaattaaag tgcggcatga aatttcttcc
     1621 tttccgtttg acaaacagca aaatactaaa taattttaat tccttaccat tttaaggaat
     1681 ataaaattat gaaagcattg tatacaacaa ttgccaaggc ccatggtgga cgaaacggcc
     1741 atgtagaaac tacagatggg ctattaaaac ttgatttggc aatgccgaga gagctaggag
     1801 gggagggtgg tgccactaat ccagagcaat tatttgccgc gggatatgct gcttgttttg
     1861 agagtgctat tcgtcatgtt gccaatgtgc aaaaaatttc tttagaggat gtttccatga
     1921 cttccgaggt ctctttgtat gctactccag agaagggttt taaacttgga gttgcgttac
     1981 acgcccacat aacaggctta aatcagaatg aggccgaagc attagttgcc aaagcgcatg
     2041 aggtttgtcc ttattccaat gcaatacgtg gtaatgttga tgtgaaattg agtgttagtg
     2101 tcaagtaata aataacttcc atcaatcaat aaggatatct tatgtatacg ctttattcat
     2161 ttgggacgcc caatggattt aaacccacta ttatgttgga agagttaacg cagccttaca
     2221 ccatagaact gattgatatt actcagggtg aacaatttaa tcctgatttt ttaaaaattt
     2281 caccaaacaa taagataccc gttttacatg atcaaaccaa tgatttttac ctaatggaaa
     2341 gtgttgctat tttgcaatat ttagctgaaa aacatagaca gtttttgcct gaaacgacaa
     2401 aggagaaata tactattatc caatggtgtt atttccaagc agcacacata ggccctatgt
     2461 tcgggcagtt tggtcatttt catcgttatg ctcaagagcg agtaccctat gccatgacgc
     2521 gatatgctga tgaatcaatg cgtcttctag gtgttatgga aaaacaactg gtcaaagcgc
     2581 cattcattgg tggatcaaat tatactattg ctgatatggc tatctggccc tggatttggt
     2641 gttttcaatt catatatgga cagactattg atgcaaaaca gtttcccagt ttaatgtcat
     2701 ggtatcaacg aattagtgaa aggcaggctg ttagagcaac tctaacggca tatggtcgat
     2761 tatgatcacg aatctccatt agaagtaagc gagcaaagtt gaacttatct gataattaat
     2821 ggctcccaat tgaggtaatg gtgtcaagtg gggtgtttta cctggttatt ctttcaatag
     2881 attgtctcat ctgaaaaatt gaggttgtgc agctgccaat caagtaatct ctattgtctt
     2941 tatatcctat ttaaaattta gtttactctc tatatctgta attttgttca gtcttaacaa
     3001 ttccttaaca atctcttaac aattccttaa catttgtctg ccataatgcc ctcgatttaa
     3061 acataaaaaa cacagggggt atcacactgt tttgaataga actaggaaat ggagtctgta
     3121 ttttcagggg aaagtaaatt tcttctgcat catgtatcga ttcatatgaa tatttcaaca
     3181 tacgagttcg ttaataatac aattactgag gagtcacgag tcatggcgtt atcagaaatc
     3241 attatcaatg atatagttca atctcaaact aatgcagtca ttagcgaatc aaattaccat
     3301 attcttcgcc aatatctcct ggagagaaag cctttatcaa gagtactcaa tccaattaat
     3361 tctctgcttt ctgagcattg caatcaagat aagcaagcaa taataaatca cttaactcaa
     3421 ctggcttgtg agtctcaaag aaatcatgac ttacaagaag caagaagtga tgaacaagag
     3481 ggaatcaatg aaaattcttt gatgattaat tacaggagcg agctgcttac tttggaaaat
     3541 acattgaagg aactggatac aaaatgctat caacaacaac gtcaatataa tcaggtgagc
     3601 aggcaattta atgaacttaa agtcaatatg acccacatta atcaaagcat tgatagagtt
     3661 cgttatgaac gtcaattgct tgaccagcag ctaaaccacc cttactctga tggtaatgtt
     3721 tatactaatc ctcctactca cacaggtatt tatcctgatc tttcaccacc tcaggatcgg
     3781 catactcgtg atagactgtt gcaagaagaa aacagattaa ttgaggagcg tcaaaagcta
     3841 atgcatctca ttaattcaaa agaaaccgaa aaaaataaag aagagcaaaa tttaaatagg
     3901 cttcataagg agaaaaaaga agctgaagga cgttatagtg aagtaaaaca tcaaatcgat
     3961 gttgttttgc caaatagtga acaacagcgt caaatcagaa atcaagaacg tctcgctcga
     4021 gaaaatgcca gagcaagcta tgatccacat ttattgcaac tttctcataa gaatcttgaa
     4081 gcactgaaat ctcagattga aactcagatt cgggagctgg atgagagacg aaatcagtta
     4141 atgggcgaag cgacagacat aagttataaa atctatttaa ctcaattgga gcaggttctt
     4201 caagaatcgg aaaaagggcc tcaaattacg ttcaatgaga ataatgcatt aaagatgatt
     4261 ttagccatga tgaaaaacat ggaggaaatg gcggaaaaag agaaagacat ttctagctca
     4321 atcgataaag agcgacataa tctccattca ttgcaaaaaa gccttgtagg atacaccagg
     4381 caactggaac ggtatctgac gtcagatccc catttggtta agcaaaacaa ggctcttacc
     4441 gaagaaaata cacagttaaa gcaatatagt gaatcagcag acaattggag aacgaaagca
     4501 ttctatgcgt ctcttttcag tgttgggggt agtttaataa gtaccggaat attgaataca
     4561 ttcatcatta gtcctgtatt ttttgcgatt cccggtgctc ttgctgcgct tggtgtggtt
     4621 tcccttgtta ttgcggtagt ctcttattgc cagaaatact ttagtgatat gcaaatggaa
     4681 caaaacaatc aaaagattga gaaaaatgaa ttaatactaa cctcagctcg atataagaat
     4741 aaggttatgt gattgaatta ttgaaaaaat tagcggtgct atatacattt tgttttttta
     4801 aaattcacgc ctgaattatg aaaggaaaca agatgttagc accgatagta gaaatattct
     4861 gtgatattga tgatttttgc aaggcatggt ttaaagaaat gtcgccttat ttacttccat
     4921 caccgaatcg caaaagacaa cgcccttgca ggctgtcagc cagtgaaatc atgacggtca
     4981 tgattttatt tcatctcagc cattatcgca cttttaaaga ctattatcgt gaatgcgtgg
     5041 agatggatat gaaatcgtat tttccgaaac ttgtcagcta taatcggttc gtagaaatca
     5101 tgtcatcggt agtgacgcct ttatcagcct atttgctgtc gcatatgggg aagaagacag
     5161 ggctgtatta tgttgattca accaccctga aagtatgtca taacaagcgt attcatcgcc
     5221 ataaaacatt tgctggcata gcggaacgtg gcaaatcctc aatgggctgg tttttcggtt
     5281 ttaagctcca tcttgtgatt aatcatcttg gtgaattaat tgctttttgc ataacaaaag
     5341 gcaatgtgga tgaccgtcaa ccactagagc agcttttcaa aaacctccat ggtcttgccg
     5401 cagctgataa ggggtatctt tcaaagaaaa aagaggaaag ccttttccag aaaggagtta
     5461 agctcatcac aaaggtacgc agaaacatga aggctaaaat actctcaact tttgaaaaat
     5521 atttcctcgg acaacgcagt atcgttgaaa cagtaattga gcaattaaaa tcaatttgcc
     5581 aaattgaaca taccagacat cgtaaaccag ataattttgt cattaacctt ttatccggct
     5641 tagctgctta tatgctcaaa ccaagaaaac cttccctcaa aatccattcc cttaataaaa
     5701 atttaggctt acttatgtcg agctgaggtt aatactaatg aagcaatgga aaaaggctaa
     5761 tgaattaagt ttatctacaa ttccaagcct gaacgctaaa atagaacaat cagagaaaga
     5821 gctgtatgcg cttgagcaaa aattacagga tcagcagcac gcaatgagcc tgctgttgaa
     5881 taaagcgcaa aatgttacca gcaattatgg aggaagcagc aatttctttg gtaacacgac
     5941 tggtaatgtg ttctatttac cttctgcccc tctgcatgag gactctccac tgtatccaga
     6001 gattgaaggt gaaagagtaa attacggcta ctaataagct aaaatgactg gtctttaatt
     6061 tggtttcaat ttgaaggcca gtatctatga ttattcaaat tctgaattgc tctttacaat
     6121 ctgctttgta aaaatatttt gctcatacag gatttaaaat gaagtatttt ttagttaatg
     6181 ctgtttggtt tatgagggct ggggctgatt taaaggcagt atttttattg tagcctcatt
     6241 aatgtgctaa aattgtacac atgggtaacc tgatatcatt gcttgaatgc taaattacat
     6301 tctcttattg aaaaggattt ccatatgaaa acagtcctaa tatttattat ttttttatgt
     6361 tcttttcaaa tacaggcggc atgcaaatgc aactgtgacc cgacagacaa taagatgtgt
     6421 gccagtcaga atgatatgga gcatccttgc ccttcagttt gtgcgtcggc agcacctggt
     6481 atggcaccta tgtttacagc atgtcctgta tcaaaggtta ctgatccagt cacaggagtt
     6541 accaggtggg tcaatatgtg taactagcaa taaatacctg attgatcata tgttggttat
     6601 cactttcagg ttttgaatgt taggtaaaac accttgttcc catccatttt taatcaagag
     6661 tcctgagtga ttttttaaag acagtgcaac ttttcctgaa aaatgagctt tttgaccaga
     6721 ctcatcagag aaagcatcaa aaattgcaaa ggtattgtca ttaatctgca aagtaaacca
     6781 gtaggctgtt tgcggctcag ttttatcaac aatctcagcg gcattaatta ataaagcggc
     6841 aagttgctct gattttccat cgttggcagt gaattcaatg taattggcaa cagtgactgg
     6901 aactgatttt tcaggtaatt tagaggcgag cactttactg tttacaatat tttttaatac
     6961 gccattttcc cagcttccaa gaactaattt ttcagaattg tttttaagag cagtagcaac
     7021 ttgaccagca aaatgggctt ctcttccttt cgagtcataa aacgcatcaa agataatcaa
     7081 ggaattatca tttcccttaa gtgcaaacca tacttttgta ttaggctcag tttgtttcac
     7141 aagcctaccg ccagattcca aaaatttttc aaattctgag gagtttgata atttgctttt
     7201 catttttatc atagtcgctt catttgtctg atgatattga ttcataggtg tttctccttt
     7261 tgcatagtta tttatcgatg ttaaaaacaa cattactgtt gaaaaagcta taatttttgc
     7321 cttgacttta ctcatataaa atttccccat aaaatctacc tactgataga tagtttgtgg
     7381 tgttaaaaaa aatcacttta ttgtttgatc aataaaatgc cgaactcctt ccaggaacgt
     7441 ttcatctcca tataatcttg ctaataataa tccgccttca accaatgaaa taatttgttt
     7501 tgcaagagat aatgaggatt cgttatcata tccatttgtt tcaagaactc ctttaagcca
     7561 ttcgatgata agctcaaaaa atttttttgc ctgattttga attgaaacgg gtaatgattg
     7621 aaaatcagag gcgaacatac cgccgaggca cattttgttt tcagagttgt aggtgagtgt
     7681 taaaatggca tcaaagaatt tttgaatttt ttccttggct gataacgacg aattattgct
     7741 tatgtcagat agcacagcag caattttatc ggtatgccag gatataacgg caacaccaag
     7801 atcttctttt gaaggaaaat gataatggat gctggcagtt ttaatattga tggctgttgc
     7861 aatatctttg aaactaaagg cgttatatcc gtctttttgg atcaatgctt ccgcaactgc
     7921 taatatccgt tctttcgtat tacttatatt cataggcata aattctacct attcatagat
     7981 agattgtcaa gctttttata gttttctata tcaaattaaa ataacacttg tttatctaaa
     8041 tagaagtagg tggtggactg ctcattcatt aattgattct gatctattgg atcaatatct
     8101 ttatgcatcg ctatgtcaat tggccttaaa gactttatgt ctttattgat ctcgaaaaaa
     8161 acgggaggta atatatgtac atcagttcat aatagaggtc attatgtttt ttaaaagatc
     8221 aaaccctcac gtaacaccac aagatttaca aaaagtgatt caaaatttaa atgcgcaacg
     8281 tgaattaaca gagcgtcaat tgaaagaggg ctctatatca caaaaaacag ggcaagagga
     8341 gatgcagcgt ctatcaagct tgattggagc atatcagaat aatctgatgg cagcattaga
     8401 cgatcaacaa aacactaatt gccttaagta gctaatcttt ttgaggtata aaagggcagt
     8461 cattttgatt aatggcataa tccactcata atctgaatgg tcatttacgt gttgacagga
     8521 ttttgagtac gctgtgtcat tctatgtacc aagaaaacag ggatgttatt tcctgcccta
     8581 tcaatgtatc tgaaggcttc cccagacctt tactttaaat gatgttcatg agtctattta
     8641 agagattgga aataaaatag attattgaaa tttatgaata attaacccag aaagtacttg
     8701 ctttattcaa tctgtacagg tatttctatt caatcaaagc ccattctatt gagtaagaga
     8761 gtattaaatg ataaaggaca ttctcaatac catagccagc ctcgttgagg aaaacgtagt
     8821 ggtatttgca agtgaacgtg gaaaacaact tttacagaaa gttaaagccg atcttgtatc
     8881 gtttaaacca attaattttt atgcattgga tgcgggaaaa caaataacag acgcgcttaa
     8941 actaatagag agctattgca ttgaaatgaa cagaatattt gatgaattaa atcatcaatc
     9001 ttcagtttct ttagccaatg aaaaattaac tcataaaata aaaaacattt taaccaactt
     9061 aaaaaacaaa caaaataaaa taacccagtt acgagaaaaa attccagagg gcatgcttga
     9121 tatcaagcga gcattgtata ttgtagaaaa ttcttttctt agcgaatcag aaccagagga
     9181 aaaagaactg agatcaaaat ttaagcgcat taaaaaattt atgagtaatt caaataagga
     9241 atatcttgat ttaattaaaa agggaggatt acttaacact gttttactgg ataccaccac
     9301 tttgtattgg aaccaattac acgaatactc aacattatta aatcagtgtc gtattacttt
     9361 acaaaaatct catcatctta ccaaagaagg gcaattagcg ctccgctgtt ttaatagtgc
     9421 gattcagaaa atgccaccaa agaaacatat cattaatgcg ttaaaaatat tgaacaagcc
     9481 aaatagcaag acagaagcga ttgaaaaaat aggctttgtt tcacctcatg gtagggaagc
     9541 ctgtatgcaa ctaacttgtt gggggaaaaa atttttttat atacctcgta gcgaagaaat
     9601 gtatcatttt gattatgatc ctaaagaaga tttgaatgag actgggggta actgttttgg
     9661 tgagtcaatg atgtttattc atttcttatc caagggagcc atcagatggt tgtgtcccga
     9721 agcagggtta attaattttc agttagatca aacaagaaat ttaaagttta aaaaggcaac
     9781 cttaggcgaa ggggaaacat tggtatcgga taacagtccc catgattcat tagaatggga
     9841 agatatgagg cctgtgcttt tggataatcc ttactttaaa ccaggcagtc tttgtggtgt
     9901 catattctca atgaatgatt acacgaaagc aaaaagagag tttacagcag ggcatatgat
     9961 agtagttgcc aagctggata ctaacttgaa tccatacaaa tacattatat atgaaaaaga
    10021 ttttggtgca tttggattaa ctgatgatga atctttggaa tacctaatca gtgaacaaat
    10081 attaccactc tatagaggga tgaattattc aaaaattaaa ttggttaaat atggtgaggc
    10141 ttcaactgag acctatgatc ttttaaataa aattaagcct cagacaggta ttccacaaaa
//
LOCUS       DACVWI010000110        10102 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.110, whole genome shotgun sequence.
ACCESSION   DACVWI010000110 DACVWI010000000
VERSION     DACVWI010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 10102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10102
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.110"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..903
                     /locus_tag="JBH85_09950"
     CDS             <1..903
                     /locus_tag="JBH85_09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0946522.1"
                     /translation="NFSQIQVFITIVESGGFIAAGEKMHRSQPAITNAIKKLESSLGF
                     ELFDRKVYRPQLTAKGKAFYQKAREVVAQFMQLENSAETLRSGVETQFSIDLDIALPL
                     PGYAPLIQSFIRQYPETCFSLSNNTFVRCLERLERRECHLCIAASHIRSPQIEYLRMP
                     SIRMIPVASRDYYDQHKERINNPKLGIYCMQIMIAGTQQELYQLKIEPLSHSMPKWLV
                     GDMYIRKQLILSGMGIGRLPDHLVEKELAEGSLVQLNTRDYVAVTMDIYAMRLNNQEH
                     GMVSNYAWQSLKSYAEDTVSPDLK"
     gene            1036..1767
                     /locus_tag="JBH85_09955"
     CDS             1036..1767
                     /locus_tag="JBH85_09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase-C39 like family protein"
                     /protein_id="HAU0946523.1"
                     /translation="MDIIMIDFKINSQPDDESCGPTCLHAIYQYYGLDISYEEVANQV
                     ESFLSGGTIAPMLGKHALQLGFKVTLYVNNLQLYDPTWFNSDGSSNTDVLREMLMQQM
                     RYKRNQYLARGTHAALDFLTLGGAIYFRCLTAEILKEYFARQIPILTGLSSTYLYNCS
                     RELFNNEGKSRSDPIRGLPCGHFVVLCGYNQKHRLVVVADPYKKNPVSGDNYYTVSIH
                     RLINAIMLGVVTRDGNLLIIEPKNS"
     gene            complement(2040..2444)
                     /locus_tag="JBH85_09960"
     CDS             complement(2040..2444)
                     /locus_tag="JBH85_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAU0946524.1"
                     /translation="MNNKKIGEFAKLCGVGIETVRYYQRQGLLHVPLLNKELGAEKIR
                     RYGDDDISRLKFILLAKKAGFTLKEIKELLEFDAKNDRERVRDMAERRIEKLNLKINE
                     LTEARNRLSLLVTKCIETSSSPCPILMTFEKS"
     gene            2514..3257
                     /locus_tag="JBH85_09965"
     CDS             2514..3257
                     /locus_tag="JBH85_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin"
                     /protein_id="HAU0946525.1"
                     /translation="MNHTSIKKAVLYRMVIEHHVCPYGLKARDLLRRQGYEVEDNWLT
                     TREQVEAFKDKHNVKTTPQTFINDERIGGYDDLRRYFGKKVRDPKEKSYRPVIVLFAI
                     TALMAMAVSYTRFANPFTPHALSWFIAFSMAVLALLKLQNIESFSTMFLNYDLLAKRW
                     VPYSYIYPFAEALAGILMIAGALNWLSIPIALFIGTVGALSVFKAVYIDKRELKCACV
                     GGDSNVPLGFISLTENLMMIGMALFMLLM"
     gene            3442..4548
                     /locus_tag="JBH85_09970"
     CDS             3442..4548
                     /locus_tag="JBH85_09970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946526.1"
                     /translation="MQFCQMSKEIKKNLQNNNSAFVYLRSTGLATNSLSSILQYMTRI
                     IVLTESAGIALGILGVLFSVIGFVSSTIARILDPTASKLSRVMSAGILIAAAAGAIPL
                     IYLGTLFPAMWVYLGIGIMGFGILNSSYYLYSDVRKESALINQYKDNPEQYVESIKEK
                     RQAKYEKLLNTRLDDKQARVLLVFKLYQLDKKLAFAKQEGPARLYDIVCHRKHTRSLE
                     RFIDLGTSLTSLIVGVSGLFWGIAAWPIGPILLGISLAVFSVSLSKSAIQFYRKVNKN
                     NALLKEVLSNDRYVSLIDANLDNPYDIEEMGTVEKTQEKVCTHELSQESALSKDQEHK
                     EHYTKLFQPVNKTALRPNDEETDELSCKPVLLQR"
     gene            4668..4949
                     /locus_tag="JBH85_09975"
     CDS             4668..4949
                     /locus_tag="JBH85_09975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAU0946527.1"
                     /translation="MANVTKLSGIHFTDHDLRRTLITIAEGLDTSAYALKRLMNHKMN
                     GDITAGYIVTDVDRLRKPMPQITDYFLKCMGVQPSATLVAIRPQGAVHE"
     gene            5173..5355
                     /locus_tag="JBH85_09980"
     CDS             5173..5355
                     /locus_tag="JBH85_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946528.1"
                     /translation="MSILIKFESLAKQAIFSSNKDIILQSIGLLDMIKAKNNQKIRMT
                     LSNSSEQFADMSRVVR"
     gene            5370..6134
                     /locus_tag="JBH85_09985"
     CDS             5370..6134
                     /locus_tag="JBH85_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylase"
                     /protein_id="HAU0946529.1"
                     /translation="MKKLALVGSGIKSISHFTFEFNTYTTSADKVLYLVNEPITKQWI
                     ERYSKLSESLDPIYFAENDRQISYDKIRDKILTELETHNFITVVLYGHPTVFADPGLQ
                     SIIIAQKKSIETIVLPGISVENCLYADLKIDPGQFGCFHVEATELLLYDKIIDPTVHL
                     CIWQPGMIGNRSVPKPNQKSNHLELLRIKLKKYYPDDHISILYEASMYPGVEPIIHKF
                     PLYDIEDQNIGTLSTLYIPPLPQRKPNLDILKQITS"
     gene            6164..7342
                     /locus_tag="JBH85_09990"
     CDS             6164..7342
                     /locus_tag="JBH85_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946530.1"
                     /translation="MLSVLSYRLSLLPKLSKTCYLLLLFSFLECVAGGIAYYLSLYLG
                     TSTPLTKLQIGQVGSIVGFGALAGALCSTYITDKLNNKNIIIASFLFLGLGFFCLPQS
                     MSFLLISGCVFIIGFATSIFLTTNNTLLLQNAPQDQNSLRFIQSMKIVSENLGNSFSI
                     LLIMFFAAQYYGQIFEVIGLFFFLFALNTMKYLNVKQNSLEDSSYEEKETNQQGNNKR
                     LYVTISAVFIVGIIYAQQRIAYPLFLHEAFSSFTITAILFWLDPIIVSLFQVKITKIV
                     SPLKISHQLAIGGLLLGTGLFALLIVDSIGGAIMACLTFILGEMLFMPTSFVRCYESA
                     GNKRKGMVAGAWRSAYSSGLIVGPVLSGFLMEYYSYNACWILAGILGFFLFILFSVKK
                     "
     gene            complement(7343..8701)
                     /locus_tag="JBH85_09995"
     CDS             complement(7343..8701)
                     /locus_tag="JBH85_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946531.1"
                     /translation="MIRIGTYYLISCTKMLAIKKVFWTDIRNIMKTINPVFFELVDKL
                     SPDNKFAMYLVDYGYGDLVGDDDGIFLPTKTGQYVRLDSEYTPPSILNDLAYGLTNSP
                     LGVFFNKSFEWFLNTSDEQINRTFPIYIDPPGTFFSIGHIINYGYTATHLPNGVLFVT
                     AGSKSNFMIPKIGCGIMHSRIQKNHNITKSAPRSYHEHADIFQDIVKGNRDNNGWSAS
                     VLYFSENWIEKISKDSAWQEVRDYFYRISNHRSEYAVNSDYYNHVYRVTNKRNNLKSN
                     LLIYETARHLFEILLGAKLGFAPAMDDELLPLSIIQEVYSECYKLEYLPIIAIPAYYN
                     YRDPKPVYYSLQYPSLCSYSPKARNASTTLSDLIALIDVVHKYQKDFTLPIRECKNTI
                     LEEVSKITSFNFYHPATEENSIIKSPEIIPYQDERFRGEKRFPINASFFKGCVSIFSN
                     SI"
     gene            8856..10043
                     /locus_tag="JBH85_10000"
     CDS             8856..10043
                     /locus_tag="JBH85_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HAU0946532.1"
                     /translation="MFKSVQQRTIQNGQVIPFYHSTNELAHIQNILQSQTPLVSLKEI
                     NKFRQLIARASVGEYFLIQSGDCAENFYECDKDTTHAKLDFIRHLATFFHQKTGCSVI
                     QVGRIARQYAKPRSNQYEICQNKRIYSYFGGMINQSQETQRRPNPWRILLSYNCSASI
                     YRKINQWNRGINPEQKIYTSQEAFLFNYEQSLTRWDERTGLYYNLSTHFPWLGKRTVS
                     SLQHINHLKKIANPIAVKIGPDTPIKNLVKVINELDPSYIPGRITLIPELGAQNVYHI
                     LPQLIDAVKRTDRTVLWSCDPMHGNTETLSSGIKIRKLSNIVEEIKNSFFIHRKMGSQ
                     LNAIHLEATHQNVTECMDYKSSHCESISDLKKNYKNLLDPRLNYAQTLHVIQCVAKYY
                     ANS"
BASE COUNT         3280 a         1793 c         1839 g         3190 t
ORIGIN      
        1 aatttttcac aaatccaggt atttattaca attgtcgaat ctggtggatt tattgctgct
       61 ggagagaaga tgcatcgttc acagccggca ataactaatg ccataaaaaa attggagtcc
      121 agcctgggct tcgaactgtt tgatagaaaa gtataccgac ctcaactcac tgcgaaaggt
      181 aaagcttttt atcaaaaagc aagagaagtg gtcgctcaat ttatgcaact ggaaaatagt
      241 gctgaaacat tgagatccgg agtagaaaca caattttcta tagatctcga tattgcttta
      301 ccattgccag gatatgctcc gcttattcaa tctttcataa gacaatatcc cgaaacttgt
      361 ttttcactaa gtaacaatac ttttgttcga tgtcttgagc gcctggaaag aagagagtgc
      421 catttatgta tagctgcaag ccatattcgt tctccacaga tagaatattt gcgtatgcct
      481 tccatacgaa tgattcctgt tgcgagcagg gactattatg accagcataa agaaagaata
      541 aataatccca agctgggaat atactgtatg caaattatga tagctggcac gcaacaggaa
      601 ttatatcaac tcaagattga gccattaagt cattctatgc ccaaatggtt agtgggtgat
      661 atgtatattc gtaaacaact gattttatcg ggtatgggta ttggccgttt accggatcat
      721 ctggttgaaa aggagttggc agagggctct ttggttcagt taaataccag ggattatgta
      781 gccgttacta tggatattta tgctatgcgg ttaaataatc aagagcatgg catggtctcc
      841 aattatgctt ggcaatcact aaaaagttat gctgaagaca cggtatctcc cgatttgaaa
      901 taaccaattt ttgcgtttgc ttgctaattc aagcagtttg gtggatcgaa tatttgaaaa
      961 acaggaggtg attcattgac ataaaaccaa gataagccta aatttaaatc aaaaagacat
     1021 aaaattgatc tccagttgga tattataatg attgatttta aaataaattc ccaacctgat
     1081 gatgaatctt gcgggccaac ctgtttacat gccatatatc aatattatgg cttggatatc
     1141 agttatgaag aggtggcaaa ccaggtagag agctttttat ctggtggaac aatagcgccc
     1201 atgcttggta aacatgcctt gcaattggga tttaaagtca ccctttatgt caataattta
     1261 caattgtatg acccgacatg gtttaatagc gatggttcat caaataccga cgttctgaga
     1321 gaaatgctca tgcaacaaat gaggtataag cgtaaccagt atcttgcccg cggaacacat
     1381 gcagcacttg attttctgac tttagggggc gctatctatt ttcgatgcct aactgcagaa
     1441 attttaaagg aatattttgc caggcagatt cccatattga cagggcttag ttcaacctat
     1501 ctgtataact gcagtcgtga attattcaac aatgaaggca aatcgaggag tgatcctatt
     1561 cgcggcctac cgtgcggaca ttttgttgta ctgtgcggat acaaccaaaa acatcgctta
     1621 gtagtggtcg ctgatcctta caaaaagaat ccggtttcag gtgataatta ttacaccgta
     1681 tccatccata gattgattaa cgcaattatg ttgggagtag tgacgcgtga tggtaattta
     1741 ttgattattg aaccgaaaaa ctcgtagacg agcagcaagt tcgaactatc ccagaccaag
     1801 caattgtatt accagatttt taatattaat ttaaataaaa cagtgcgagt aaatatcttc
     1861 tttatcattc gctaataatt catatacaat ggatgccggt taatttaaag aatataacga
     1921 cacctccaaa atgagccgag atgaaaattg acagctggtg agtaacgtaa tagcaaaagc
     1981 ttctcatgaa gaaattttgg aaattatcaa taatttaatg gctttctatt tttatgggtt
     2041 taacttttct caaaggtcat aagtatgggg caaggtgaag agctggtttc tatacatttt
     2101 gttactaaga gtgaaagtct attccgagct tcggttaatt cattaatttt taaattaagt
     2161 ttttcaatac gcctttcagc catatctctt acgcgctctc gatcattttt agcatcaaac
     2221 tccaatagtt cttttatttc ttttaaagta aagcctgctt ttttggctaa aaggataaac
     2281 tttaagcgac ttatatcatc gtcaccataa cgccttattt tttcagctcc aagttctttg
     2341 ttaagcaacg gaacatgaag cagtccctgg cgttgataat aacgcacggt ttcaatgcca
     2401 actccacata atttagcaaa ttcaccaatt tttttattat tcattacttg actccgtact
     2461 atagtacgta ctctatatta ctatttatag accattaatc ataggggata gaaatgaatc
     2521 atacttcaat taaaaaagca gttttgtatc gcatggtgat agaacatcat gtttgccctt
     2581 atggtctcaa agctagagat ttattaagac gtcaaggcta tgaggtagaa gataattggc
     2641 taacaacccg tgaacaggtc gaggcgttta aggataaaca caatgtgaaa accacacctc
     2701 agacttttat caacgatgag cgtatagggg gttatgacga tttacggcgt tactttggaa
     2761 agaaagtaag agatccaaaa gaaaaaagtt atcgccccgt catcgtactg tttgcgatta
     2821 ccgctttaat ggcgatggca gtgagttata ctcgctttgc caatcctttt acaccacatg
     2881 ctttaagctg gtttattgca tttagcatgg cagttcttgc tttattaaag ctccagaata
     2941 tcgaaagctt ctcaaccatg tttttaaact atgacctcct ggccaaacgc tgggttcctt
     3001 acagctacat ttacccattt gctgaagctt tagcagggat attaatgatt gcaggagcgt
     3061 taaattggct ttctattcca attgccttat ttattggaac tgtaggtgct ctttctgttt
     3121 ttaaagccgt ttatatcgac aagcgtgagc ttaaatgtgc ctgtgtggga ggtgatagta
     3181 acgtaccttt aggatttatt tctctcactg aaaatttaat gatgatagga atggctttat
     3241 tcatgttgct tatgtaattc agctagcaag cgtagctctg atgaagtgga acgaaatccg
     3301 ggagtatggc tgcgcttgta tcagagctac actagctata cactgtcaac atataaaaag
     3361 tcgatcatcg agctatcgat atccagggtt gttaaagttc tcttaagata gaccttatat
     3421 aatgaacatt ttttatattt attgcagttc tgccagatga gcaaagaaat caagaagaac
     3481 ctacagaaca ataattcagc ctttgtctac ttgcgcagca cggggctcgc cacaaactct
     3541 ctgtcgagca ttctgcagta catgacacgc atcattgtac ttacggaaag cgcgggcatt
     3601 gccctgggca ttctgggagt gctcttttca gtcattggtt ttgtaagcag tactattgca
     3661 agaatacttg atccaacagc ctctaaatta agtcgtgtga tgtcggctgg tattctcatt
     3721 gcagctgcag caggggctat accactcatc tatctgggaa cgttattccc cgcgatgtgg
     3781 gtatatcttg gtataggcat tatggggttt ggcatactta attcgtcata ctacctttat
     3841 tcggacgtgc gtaaggaaag tgcactcata aatcagtata aagataaccc tgaacaatat
     3901 gtggaaagta ttaaagaaaa gcgacaagcc aagtacgaaa aacttctcaa cacgcggctc
     3961 gacgataagc aagcacgagt gctgctagtt tttaagcttt accaacttga caagaaatta
     4021 gcctttgcta aacaagaggg gccagctaga ctttacgaca tcgtatgcca tcgcaagcac
     4081 acccgtagtc tggagagatt tattgacctt ggcacttctc ttacaagcct tattgttggg
     4141 gtgtcaggcc tgttttgggg aatcgctgcc tggccaattg gccccatatt gctcggtata
     4201 tctttggctg tattttctgt aagcctatca aagtcagcga tacagtttta tagaaaagtt
     4261 aataaaaaca atgcgctttt aaaagaagtt ctctcaaatg atagatatgt atcacttatt
     4321 gatgcgaatc tggacaaccc gtatgacatc gaagagatgg gcactgtgga aaaaacacaa
     4381 gagaaggttt gtacgcatga gctttcacaa gagtctgcgc tctcgaaaga ccaagaacat
     4441 aaagaacatt ataccaaact cttccagcct gtgaataaaa ccgctctcag gccaaacgat
     4501 gaagagaccg atgagctaag ctgcaagccg gttctactcc aaaggtagtg gcactataat
     4561 ctggttatag caatctaact ccttgactcc gcaatcaaaa gaggattaat gagtatattt
     4621 ttccaggcac aagagcagca ggtcatatca ttgaaccacg taagcaaatg gccaatgtga
     4681 ccaaactctc aggcattcat tttacggatc atgatttaag acgaactctt atcactattg
     4741 ccgaggggct ggatacctcg gcttatgctt tgaagcgttt gatgaaccat aaaatgaacg
     4801 gtgatatcac tgcggggtac atcgttaccg atgttgatcg gttgagaaag ccaatgccac
     4861 aaattaccga ttatttttta aagtgtatgg gtgtccaacc atccgcaaca ctagtagcaa
     4921 ttcgaccaca aggagcagtt catgagtaat aaaattaaag ttcaagatga cgcattaccc
     4981 ttaaaccaag attaaatttc tttaattgac aaatagaagt gaagaatatc caaatagtaa
     5041 tttatattga gcgtttcttg attatacgta atgatatcaa tctattgatt tttccgaggg
     5101 atctatttca tatggttttt tcattctata tcacttatac tcttttatag agggcatata
     5161 agagtgaata ttatgagcat cttgattaaa ttcgaaagct tggctaaaca agcaatcttt
     5221 tccagtaaca aagatatcat tcttcaatcg attggcctgc ttgatatgat taaggctaaa
     5281 aataatcaaa aaataaggat gactttatct aatagttctg aacaatttgc tgatatgtct
     5341 agggtagtta gatagtaaaa ggatttatca ttaagaaatt agctttagtt ggttcaggta
     5401 ttaaatctat atctcatttc acatttgaat ttaatactta cactaccagt gcagataagg
     5461 ttttgtattt ggttaacgag cctattacta aacaatggat agaacgttat tcaaaattgt
     5521 cagaatctct tgatccgata tattttgctg aaaatgatcg acagatttct tatgataaaa
     5581 taagggataa aattcttact gagctggaaa cacataattt tattacggtg gtactttatg
     5641 ggcaccctac agttttcgca gatcctggct tacagtctat aattatagct caaaaaaaat
     5701 cgattgaaac aatagtctta cctggtattt ctgttgaaaa ttgcctctat gcagatctta
     5761 aaattgatcc cggacaattc ggatgtttcc atgtagaggc aacagaatta ttgctatatg
     5821 ataaaattat cgatcctacg gtacaccttt gtatttggca gccaggtatg attggcaatc
     5881 gctctgtacc taaaccaaat caaaaaagta atcatttaga gttactaaga atcaaattaa
     5941 aaaaatatta cccagacgac catatatcta ttctttatga ggcgtcaatg tacccaggtg
     6001 ttgaaccaat aatacataaa ttcccattat atgatattga agatcaaaac attggaacac
     6061 tttcaacatt atatatcccc cctcttcccc aaaggaaacc taatttagat attctgaaac
     6121 aaataacctc atagaataag ctactaatta tttaaggaaa aatatgttat ctgtactgtc
     6181 ttatcgatta agtttactgc caaaattatc aaaaacttgc tatttacttc ttcttttttc
     6241 tttcttggaa tgtgtagcag gagggattgc atactatcta tcattatatt taggaacatc
     6301 aacaccctta acaaaattac aaattggtca ggttggttct atcgttggat ttggagcatt
     6361 agctggtgcg ttatgttcta cttacataac agataaactc aataataaaa atattataat
     6421 tgccagtttt ctctttctag gtttaggctt tttttgttta cctcaaagca tgagttttct
     6481 gcttatatca ggttgtgtct tcataattgg ttttgcaaca agtatttttc ttaccacgaa
     6541 caataccctc ttattacaaa atgcccctca agatcaaaat agccttcgct ttatacaaag
     6601 tatgaaaata gtcagtgaaa accttggtaa tagcttttct atattattaa ttatgttttt
     6661 tgcagcgcaa tattacggtc aaatttttga agtaattggt ctatttttct tcctttttgc
     6721 actgaatacc atgaaatatt taaatgtaaa gcaaaattca ttagaagact cctcttatga
     6781 agaaaaagaa acaaatcaac aagggaataa taaacgactt tatgtaacta ttagtgctgt
     6841 atttatagtt ggaattatct atgcccagca acgaattgca tacccacttt ttttacatga
     6901 agctttttca agttttacta tcaccgcaat acttttctgg ttagatccta ttattgtttc
     6961 tttatttcag gtcaaaataa caaaaatagt atccccattg aaaatatctc atcaattagc
     7021 aataggaggg ttattattag gtacaggctt atttgcatta ttgatagtcg atagtattgg
     7081 aggtgcaatc atggcgtgtt tgacgtttat tttaggagaa atgttattta tgcctacttc
     7141 ctttgtacga tgctatgagt cagctggaaa taagcgtaaa ggcatggttg ctggtgcatg
     7201 gagaagtgct tattcctctg gtctgattgt tggccctgtt ttatcaggtt tcctcatgga
     7261 gtattatagt tataatgcct gttggatatt agccggaata cttggttttt tcctatttat
     7321 tttatttagc gtcaaaaaat aattaaatac tatttgaaaa aatcgaaacg catcctttaa
     7381 aaaaggatgc attaatcggg aacctctttt cacctctgaa gcgctcatcc tgataaggga
     7441 taatttccgg tgatttgata atgctatttt cttcagtagc tggatgatag aaattaaaac
     7501 tggttatttt tgaaacctct tcaaggatag tatttttaca ttcccgaatc ggtaaagtga
     7561 aatccttttg atatttatga acaacatcaa ttaaagcgat aagatctgaa agggtggtcg
     7621 atgcattcct tgctttgggt gaataactac atagagaggg atactgaaga gaataataaa
     7681 caggtttagg atcccggtaa ttataatatg caggtattgc tataatgggc aaatattcta
     7741 acttataaca ttctgaataa acttcttgaa taatagataa tgggagtaat tcatcatcca
     7801 ttgcaggcgc aaaaccaagt tttgcaccta gcagtatctc aaaaagatgt cgtgctgttt
     7861 catagattaa taaattggat tttaaattat tccttttatt ggtaactcta taaacgtgat
     7921 tataataatc gctatttact gcatattcag atcgatggtt tgaaatcctg taaaaataat
     7981 ctctaacttc ctgccatgcg gagtccttac tgattttttc aatccaattt tcagaaaaat
     8041 ataatacaga cgcactccaa ccattattat ccctgttacc tttaactata tcttgaaata
     8101 tatcagcatg ctcgtgataa gagcgaggag ccgactttgt aatattatga ttcttttgta
     8161 ttcgcgaatg cataattcca cacccaattt tgggaatcat aaaattggat tttgaaccgg
     8221 ctgtaacaaa aagaacccca tttggtaaat gggttgctgt gtaaccataa ttaataatat
     8281 gtcctatact aaaaaatgta cctggaggat caatatatat aggaaatgtc cggttaattt
     8341 gctcatcgga ggtatttaaa aaccattcaa atgatttatt aaaaaaaacg cctaatggac
     8401 tattagtcaa accataagcc aaatcattta aaatcgatgg gggagtatat tctgaatcaa
     8461 gacgaacata ttgacctgtt ttagttggca aaaatatccc atcatcatca ccaaccaaat
     8521 ctccataacc ataatctacg agatacattg caaatttatt atctggagag agtttatcaa
     8581 ctagttcaaa aaaaaccgga ttaatggttt tcatgatgtt cctgatatca gtccaaaaaa
     8641 ctttttttat tgctaacatt ttagtacaag aaattaaata gtatgtccca attctaatca
     8701 aaaaaataac tttactctac tattagttca gacaaattgt cagtataagt tcatgaagtt
     8761 aaatgattta atcttatctt caaattgaag tttttataac agcattttga atcaaggttt
     8821 gttagtaaat ctttaagtta caaggaaatg taaatatgtt taaatcagtc caacaacgta
     8881 caatccagaa tggtcaagtt attccattct atcattccac taatgaactg gcacatatcc
     8941 aaaatattct acagtctcaa actccattgg tatctttgaa ggagattaat aaattccgtc
     9001 aattgatagc aagagcatcg gtaggagagt attttttaat acaatcgggt gactgtgccg
     9061 aaaattttta tgagtgtgac aaagacacaa cccatgcaaa attagatttt attcgtcact
     9121 tagccacatt ttttcatcag aaaactggct gtagcgtgat ccaggttggt cggattgcaa
     9181 ggcaatatgc gaagcctaga agcaatcagt atgaaatttg ccagaataaa agaatctatt
     9241 catattttgg tggcatgatt aatcagtctc aagaaactca acgacgtccc aacccttgga
     9301 ggatactgtt gagttataat tgttcagcat ctatttatcg caagattaat caatggaatc
     9361 gaggaataaa cccagaacaa aaaatatata cgagccaaga agctttttta tttaattacg
     9421 aacaatcatt aacacggtgg gatgaacgaa caggattata ttacaacctt tcaacacatt
     9481 tcccatggct tggtaaaagg acagtaagca gcttacagca tattaaccat ttaaaaaaaa
     9541 ttgcaaatcc tattgccgtg aaaataggcc cagatacccc tatcaagaac cttgtaaagg
     9601 tcatcaatga attagatcca agttatattc ctggacgtat cacccttatt cctgaattag
     9661 gagcgcaaaa tgtctatcac attttaccgc agttaattga tgcggtgaaa agaacagatc
     9721 gcactgtttt atggagttgt gatcccatgc atggaaatac tgaaactcta agttcgggaa
     9781 taaagattag aaaactaagt aacattgttg aggaaatcaa aaattcattt tttattcata
     9841 gaaagatggg tagccaactt aatgctatcc atcttgaagc aacacatcag aatgtcacag
     9901 agtgcatgga ttataaatca tctcattgtg aatcaataag cgaccttaag aaaaactaca
     9961 aaaatctatt ggaccctcga ttaaattatg cacaaacgct gcatgtcatt cagtgtgttg
    10021 caaaatatta cgcaaattct taataaaagg tctggacatg gacgaactaa aaaaaagagc
    10081 ttatttagct ttaaccaata ta
//
LOCUS       DACVWI010000111         9779 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.111, whole genome shotgun sequence.
ACCESSION   DACVWI010000111 DACVWI010000000
VERSION     DACVWI010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 9779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9779
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.111"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(68..1066)
                     /locus_tag="JBH85_10005"
     CDS             complement(68..1066)
                     /locus_tag="JBH85_10005"
                     /EC_number="4.99.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HAU0946533.1"
                     /translation="MMRRGLLLLNLGTPNNADIRAVKLYLREFLTDKRVIDLPTIPRY
                     ILVYCLILPFRSPKSAQAYQSIWTEKGSPLLYHSQNLVTKLQSALKDEYKIALGMRYG
                     TPSITTALAELKDCHSLTILPLFPQYSSAATGSAIEKTLSHLANQEIIPSIKIIRDFY
                     QRPEYIQAQAKIMKPYIKDNFHLLFSYHGIPERHIHKSGCDTLCPQTCTPIYDKNQAC
                     YRAQCYQTSLLLAKELQLGTHQYTTAFQSRLGKTPWIKPYTDEIFAELISKGIKNIVV
                     SCPSFVADCLETLEEIGIRAKEQWEKLGGEQFILTPCMNDHPEWIKAIQSIVNEQF"
     gene            complement(1174..1407)
                     /locus_tag="JBH85_10010"
     CDS             complement(1174..1407)
                     /locus_tag="JBH85_10010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAU0946534.1"
                     /translation="MARGEVKWFNNAKGWGFIIPEGGGEDIFVHFSSIHGTGYKTLVP
                     GQAVTYDVVNGERGLHASNVVALSENAEQEEIA"
     gene            1644..2075
                     /locus_tag="JBH85_10015"
     CDS             1644..2075
                     /locus_tag="JBH85_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HAU0946535.1"
                     /translation="MFCIDDRIKSSSFIIGEWPLSTVLLKNDASYPWFILVPRRMDIQ
                     EIHQLEKSDRFLLIEEINQLSLLASDYFKPDKLNIGALGNIVPQLHIHIVIRRKSDPL
                     WPQGIWQASMPSIPYPESELKSLLPTLGDLVGAYDKPQSLC"
     gene            complement(2289..2717)
                     /locus_tag="JBH85_10020"
     CDS             complement(2289..2717)
                     /locus_tag="JBH85_10020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAU0946536.1"
                     /translation="MFIIVIYNSSNGESIFKFQQGALMIKKIAFTMYPVQNMDRARQF
                     YEKTLGLEVGKISAEGAWVEYDLPQGGCFAITTLAQGVIPSAHSGGSVAFEVDNLDDL
                     VFQLKSKGVQFKIDLFASPVCRMAIAVDSEGNAFTLHQLT"
     gene            2735..4087
                     /locus_tag="JBH85_10025"
     CDS             2735..4087
                     /locus_tag="JBH85_10025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0946537.1"
                     /translation="MMCMLKKLMFLLLLGAGLLSCGQSTDQQISNIITPKQFPSSPMD
                     YRPVQELPYLAWWKQFQDPELDRLIDTGLKTNMDIHIAMANLQQAQGELQQVKLSWIP
                     NVQILGGYSTNPALGVPGGFYGIWPSYILNIMQLYTQQKRAQYQVQYHQAAIDGLRLT
                     LIGQVAAAYFTLIAQLEQLKLLYKLDRDLKSLIALSRKEINIGLKNDIDLAQLQSNER
                     LIAAQIKPIKHNIVVSQNALRYLINENPGLIKSKNNFAQLDFTRFKPGSLPATVLGNR
                     PDMKMAEYSLKAARAGIFVAYSDFFPVMQLDDFIGEAHLPDSTFEQATDAYVNWTINP
                     NTLGKISVSKGVYNAKLAEYVKTVRLILKEVDNAFSANKRMREQFLSYRHAQEDYQHK
                     YKLQNGLLKSGLMSYKELLESKVYLDTLALSTNQAKLELAMSLVMLYQDLAGGYACSD
                     "
     gene            4212..5264
                     /locus_tag="JBH85_10030"
     CDS             4212..5264
                     /locus_tag="JBH85_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAU0946538.1"
                     /translation="MVGYFMKKLMEYGGKIKEYLLRLKPKRWFTLTNVIIFIGFLTAI
                     IYVFSYLIPFTDNAFVVNNVRPVAALTSGYITELYVKNGDAVRKGQKLFTVFKKPYEY
                     TVEQLSADLAGAQAKLAVLKATYERDLKLSGNEQKIYKKLAQDDQKYLKGYAIKSVSL
                     ITLQNSQQETKAAKDKWQASLKQLEIDQHQITVQENEIKSIQARLKNAKVNLDLTDVY
                     AQGNGVIQNLFFTIGTPVNINQPLFSLVDQDNIYIQANFNETDLRDVRKGSKVLIFPR
                     MYLGRKIFHGVIDSDYWSANRQLVDDRTQLQNVINENQWILLPQRLPVIIKVTDPDPK
                     YPLRVGASAYVYVEVY"
     gene            5236..6174
                     /locus_tag="JBH85_10035"
     CDS             5236..6174
                     /locus_tag="JBH85_10035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946539.1"
                     /translation="MLMSMSKFIEWIDEVDPYAVQRIALYKSLFIATVMAYVYWVFRP
                     TNFTAFFSPFLLVRFYESPSLTSFKEKEHFLIFIGVVVVLLSTSFYLVYPFRVVFFFF
                     SIIALASVYFYVLKNYLPLRNVTMLIIASGATILSTEPPANWQIVYDIVGSSALSMIA
                     IFICLRFFPNQYLSVWKRALAKFIQSLELDIEGSFTHRGPKFMQEEMTHLGMLRQYRR
                     LIPKKYMIYTQRISINIRNIQFSLDNLYYEAKNEAFWHGVKENLYTLRCAIKTNTSCG
                     TPKMSIMPESKLQQYVMRCLQQAFSQWNQLCMILQH"
     gene            6141..7040
                     /locus_tag="JBH85_10040"
     CDS             6141..7040
                     /locus_tag="JBH85_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HAU0946540.1"
                     /translation="MESIMHDTSALKKKLDYARFIHLVIMFMVAMLIFLFSTFPEKWW
                     VLITVLSVSAGIEPGLIIRRAKHRIGGTLLALIILIPLLYLLQLNYRLISILFVLAIV
                     GLSVATLNTRRYDISVFFITLVVFFLMAQTEEATSPRGPFEMVLNRGICTLFGVFIVL
                     AGDYFLFQAYRYSHRLYFFHQVIVYDFLNDIVRKIDESNTEKINTLLFVEKLRGQFTE
                     HYLPISISSENLKLDFKTSEHTKKRIDIFQETIWEIRRLVFALCISEFVLHSSTASEQ
                     HLQRFKLLMNKARTHFIQFEGRY"
     gene            7062..7442
                     /locus_tag="JBH85_10045"
     CDS             7062..7442
                     /locus_tag="JBH85_10045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0946541.1"
                     /translation="MSHPHYSVYNEKCPSQNVLEGISDKWSILVISLLSQKIYRFGEL
                     KREIGGISPKMLTQTLLKLERYGFVQRQSYPVLPMKVEYSLTRLGKELSAILVLLTRW
                     TETNMDKIINAEKTFCEQRLGCHA"
     gene            complement(7444..7971)
                     /locus_tag="JBH85_10050"
     CDS             complement(7444..7971)
                     /locus_tag="JBH85_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946542.1"
                     /translation="MAQELVLDDITAMMARYQKTCRYTYTNQSPIIMHPDLKDLLDYR
                     NHKIITRYNMDYPTAAMQAEEALHELMKFIWLCHKHKTDKLLYPDDKNLDFSCVIHAE
                     MADIDKMWHTFLLFTRDYHEFCDTRLNGIFFHHDPLIGENTPVSEEDYTLELTRYLTY
                     IHDHLGSETLIKWFQ"
     gene            8137..8748
                     /locus_tag="JBH85_10055"
     CDS             8137..8748
                     /locus_tag="JBH85_10055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0946543.1"
                     /translation="MNKRNWTAYYNSTKQNTLPRKSLLKAIANFDKEKINLSKSAIDL
                     GCGAGIDVMELLRCGWSVIAIDSQLSAIDSLLSSAQELTCANKLKTIISSFEALDSLP
                     KVNLINASFSLPFLKPVYFYKFWSVILKGLKPGGRFSGSFFGFNDFWNTRTDMTFLNR
                     EMICHLFSQFKIEYFQEEEKDEMDALGYYKHWHKFFIVAKKIA"
     gene            complement(8915..9724)
                     /gene="ankJ"
                     /locus_tag="JBH85_10060"
     CDS             complement(8915..9724)
                     /gene="ankJ"
                     /locus_tag="JBH85_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkJ/LegA11"
                     /protein_id="HAU0946544.1"
                     /translation="MIKMGRSEMKIASAELRELMKAVSEGHYETVNTILDKDPELVNQ
                     YAPPTYDSPLARVLNKKHIDYKMLDILVKHHVDFDYPINYHKETPIELACKNQDLQLF
                     KYLVQHNAPISEQAPHFLLVNSTNIKYLTEDKIKNTCEIIKLMGGLEAVSSKCDAEGN
                     RFGEQARKSQLINRFGGIVKYDYMQLLQSVYPIVDREVDAPTIHGSTEVLTNLLNKIR
                     GQFSSKETYDQQNLKDSISLFFMTGGEIPPSRKVPESRFEEAGIDTPKNAL"
BASE COUNT         2959 a         1671 c         1896 g         3253 t
ORIGIN      
        1 aataaatatt taatgtgaaa cataatttta ttgcgactgc cgatggttaa atcagtaaga
       61 cggcaggtta aaattgctcg ttaacaatac tttgaattgc tttgatccac tcaggatgat
      121 cgttcatgca aggagttaat ataaattgct caccgccaag tttttcccac tgttcttttg
      181 cacgaattcc tatttcctca agagtttcca ggcaatctgc gacaaaagat gggcaggaga
      241 ccacaatgtt tttaattcct ttgcttatta gttcggcaaa aatttcatcg gtataaggtt
      301 ttatccatgg agttttccca agtctggatt ggaaggcggt tgtgtattgg tgagtgccta
      361 attgcaattc ttttgccagt aatagactgg tctgatagca ttgagcccta taacatgctt
      421 gatttttatc gtatatgggt gtgcatgttt gggggcaaag cgtatcgcac ccgcttttgt
      481 gaatatgccg ttcgggaatt ccgtggtagc taaaaagaag gtggaaattg tctttaatat
      541 aaggcttcat aattttagct tgcgcctgga tgtattctgg tctttggtag aaatctcgaa
      601 tgattttaat tgatggaata atttcctggt ttgccaaatg ggataaggtt ttttcaatgg
      661 ctgaacctgt agcagcagaa gaatattgag gaaataaggg taaaatggta agggaatggc
      721 aatcttttaa ttctgcaagt gctgttgtaa ttgatggagt tccatagcgc attcccaaag
      781 caattttgta ctcatccttg agtgcggact gtaattttgt cactagattt tggctgtgat
      841 acaaaagcgg agagcctttt tcagtccata ttgattggta agcctgggct gattttggcg
      901 atctaaaggg taagatcaaa caatatacca ggatatagcg cgggatagtt ggtaagtcta
      961 ttactctttt gtcagtaaga aattcacgca aatataactt taccgccctg atatctgcat
     1021 tattgggagt gccaagattt aacagtaata aaccacgtct catcagctaa agtccagtta
     1081 taaaatgaag gacataatac ctcaagttga tggacgcagc agcataaata ttagttatac
     1141 tgccgcgctt aatagtttat cacatcaatc tggttaagct atttcttctt gttcggcgtt
     1201 ttcactaaga gcaacgacat tagaggcatg taaacctctt tcaccattaa cgacatcata
     1261 ggtgactgcc tgccctggaa ccagcgtttt gtatcccgtg ccgtgaattg aggagaagtg
     1321 aacaaaaata tcttcaccac caccttccgg gataataaaa ccccaaccct tggcgttatt
     1381 aaaccacttg acttcgcctc tagccatgaa tcctccttat gctaaagctt atcaatcgtc
     1441 gactgacata agcggtcagc tgagcaattg cattcttcct taaatgacaa ttgttaatag
     1501 cctattttac aataggtcat ttcaacataa cgcaaaaagg gatcattact caataggttt
     1561 attaaaattt atctgtaatt cttataattt tgagatcatg tttttgttac aatgatagag
     1621 agcttattga tagagagagt attttgtttt gcattgatga tcggattaag tcgtcttctt
     1681 ttatcattgg agagtggcct ttatctacag ttttattaaa aaatgacgcc tcatatccct
     1741 ggtttatttt ggttccaaga agaatggata ttcaagaaat tcatcagctt gaaaagagtg
     1801 atcgattttt attaattgag gaaatcaatc aactgtctct tctggctagt gattatttta
     1861 aaccagacaa gcttaatata ggcgctcttg gcaatattgt tccgcaatta catatccata
     1921 ttgttatccg cagaaaaagt gatcctttgt ggcctcaagg tatttggcaa gcttccatgc
     1981 cttctattcc ttaccctgaa agtgaattaa agagtctgct gcctaccttg ggtgatttag
     2041 tcggggctta cgataaaccc caatctcttt gttaaaaaat gtttttaact tggtcattta
     2101 gtttatctaa actacctcat taaaaacatt ttttgcctcg accttgaggt tcatcgtaag
     2161 tcctgttagt aaacaaggca tactaaggaa cattattatt ttgtattttt ggaaatattg
     2221 atgtctctca taacaccaat acgtgtgagg ctctctttag ggattctcac acgtattggc
     2281 agcaacaatc atgttaattg atgcaaagtg aacgcatttc cctctgaatc cacagcaatc
     2341 gccattctgc aaacaggtga agcgaatagg tcaattttga actgaactcc tttggacttt
     2401 agttggaata ccagatcgtc aagattatct acctcaaaag caacgcttcc tccggaatga
     2461 gcgctaggga ttactccttg agccaatgta gtaattgcaa aacaaccccc ttgaggtaaa
     2521 tcatattcta cccatgctcc ctcagcggaa attttaccca cttcaagtcc aagtgttttt
     2581 tcataaaatt gccttgctct atccatattt tgaactggat acatggtaaa tgctattttt
     2641 ttgatcatga gggctccttg ttgaaattta aatatacttt caccattaga tgaattataa
     2701 attacaatga taaacattca ctttgaaata aacgatgatg tgcatgctta aaaaattaat
     2761 gttcttatta ttgttgggag caggtttgtt aagctgtggt caaagcacgg atcagcaaat
     2821 ttccaatatt ataacaccga agcaattccc ctccagtccc atggattatc gaccagttca
     2881 ggaattgcct tatttggcct ggtggaagca atttcaggat ccagaattgg atcgtttaat
     2941 tgatactgga ttgaagacca atatggatat tcatattgca atggctaatt tacagcaagc
     3001 tcaaggagag ttacagcaag tgaagttgag ttggatacct aatgttcaaa tattgggagg
     3061 gtattcaact aatcctgctc ttggtgtgcc aggagggttt tatggaatat ggccaagtta
     3121 tattttgaat attatgcaac tttatactca gcaaaagcgc gctcaatatc aggtccaata
     3181 tcatcaggca gcaatcgatg gtttgcgttt gaccttgatt ggtcaggtgg cagcggctta
     3241 tttcactttg atcgcacagt tagagcaact taaattattg tataaactgg atagggattt
     3301 aaagtcgtta attgctttga gcaggaaaga aatcaacata ggattaaaaa atgatattga
     3361 tttggctcag ttgcaatcca acgagcgctt gattgcagca caaataaaac ccattaaaca
     3421 caacattgtc gttagtcaga atgcgttgcg ttatttaata aatgagaatc ctggtttaat
     3481 caaaagcaaa aataattttg ctcaattgga ttttacccgc tttaaacccg gaagtttacc
     3541 cgctactgta ttaggtaatc gccctgatat gaagatggcg gagtattccc taaaagcggc
     3601 tcgtgcaggt atttttgttg cttatagtga tttttttcct gttatgcagc tggatgattt
     3661 tattggagag gcacatttgc ctgatagcac gtttgaacaa gcgaccgatg cgtacgtaaa
     3721 ctggacaatt aatcccaata ctctgggtaa aatttcagtt agcaagggag tttataatgc
     3781 aaaattggcc gaatacgtta agacagtccg attaatttta aaagaagttg ataatgcttt
     3841 ttcagctaat aaacgcatga gagagcaatt tttatcttat cggcacgcac aagaagatta
     3901 tcagcataaa tacaaattac aaaatggttt attaaaatca gggttaatgt cctataaaga
     3961 gttattggag agtaaggttt atctggatac cctggcactc tcaacaaatc aggctaagct
     4021 ggaattggcc atgtcactgg ttatgttgta tcaagatttg gctggtgggt atgcctgtag
     4081 tgactaaatc agtttgcttt gtaagacatt gattttaaaa gtcgccaggc gggctaaaat
     4141 tgcaattctc gtctcttgag ctggtcgatg agataagtta atttcgcatt attgttatat
     4201 accaagggaa actggttggc tattttatga aaaaattgat ggaatatggt ggaaaaataa
     4261 aagagtactt gcttcgttta aaaccaaaac gctggtttac tcttactaat gtcattattt
     4321 ttatcggttt tcttactgca attatctatg ttttttccta tttgatccct tttactgata
     4381 atgcgtttgt agtaaacaat gtacgtccgg ttgcggcatt aacaagcgga tatataactg
     4441 agctttatgt aaaaaatggt gatgcagtgc gtaagggaca aaaactattt accgtattca
     4501 aaaagccgta tgaatacaca gttgaacagc tcagtgctga tttagctgga gcacaggcaa
     4561 agttggcagt attaaaagct acgtacgaac gggatttgaa gcttagcggg aatgagcaaa
     4621 aaatatataa aaagttggcg caagatgatc aaaaatacct taaagggtat gctataaaat
     4681 ctgtttctct gattaccctg caaaactccc agcaagaaac aaaagcagct aaagataaat
     4741 ggcaggcttc attaaaacaa cttgaaatag atcagcatca aataacagtt caggagaatg
     4801 aaataaaatc cattcaggcc cggttaaaaa atgccaaagt caatttggat ttaacggatg
     4861 tttatgctca gggtaatgga gttattcaaa atttgttttt taccatagga actccagtca
     4921 atatcaatca gccattattc tcattggttg atcaggataa tatttatatt caggccaatt
     4981 ttaacgagac ggatttgcgt gatgtgcgca agggctcaaa ggtattgata tttccaagaa
     5041 tgtatttagg aagaaaaata tttcatggtg ttattgattc ggattattgg tccgcgaata
     5101 ggcaattggt agatgatcgc actcagctgc aaaatgttat caatgaaaat caatggattt
     5161 tattgcccca gcgccttcct gttattatca aggttactga ccctgaccct aaatatccgc
     5221 ttcgtgtagg agctagtgct tatgtctatg tcgaagttta ttgaatggat tgatgaggtt
     5281 gatccttatg ctgttcaacg aatagcgctc tataaatcac tttttattgc caccgttatg
     5341 gcctatgttt attgggtatt tcgtcccacg aattttacgg catttttttc accatttttg
     5401 ctcgtaagat tttatgaatc acccagtctt accagcttta aagagaaaga acactttttg
     5461 atttttattg gagtggtagt ggtattgttg agtacctcat tttatcttgt ttacccattt
     5521 cgggttgtat ttttcttttt ctcaattatt gcgttagcaa gcgtttattt ttatgtgcta
     5581 aaaaattatc ttccattgag gaatgtgact atgctcatta ttgcttctgg agcgacaatt
     5641 ttaagtacag aacctcctgc aaattggcaa attgtctacg acatcgttgg gtcaagcgct
     5701 ttatctatga tcgccatatt catttgttta agattcttcc ccaatcaata tctcagtgta
     5761 tggaaaaggg ctttggcaaa atttattcaa tcccttgagc tggatattga aggttctttt
     5821 actcaccgtg gtcccaaatt catgcaggaa gaaatgactc atttgggtat gcttaggcaa
     5881 tatcgtagac ttatccccaa aaaatacatg atttatactc agcgaatttc aatcaacata
     5941 cgcaacattc aattttcttt ggataatctt tattatgaag ccaaaaatga ggctttctgg
     6001 catggagtga aagagaatct ttatactctt agatgtgcga ttaaaaccaa cacatcttgt
     6061 ggcactccta aaatgtccat catgcctgag tcaaaattac aacaatatgt tatgagatgt
     6121 ttgcaacaag catttagcca atggaatcaa ttatgcatga tacttcagca ttgaagaaaa
     6181 aacttgatta tgctcgattt attcatctag tcatcatgtt catggttgcc atgctcattt
     6241 ttttgttttc gacttttccc gaaaagtggt gggtattgat caccgtcttg tcagtaagtg
     6301 cgggtattga accaggattg attatcagaa gagctaaaca caggatagga gggacactgt
     6361 tggctctcat cattttgatt cccttactct atttattgca attgaactat cgattgatat
     6421 caatcttatt tgttctggcg atagttggtt tgagtgttgc taccttaaac acaagacgtt
     6481 acgacattag tgtatttttt attactttag ttgtcttttt tttgatggca caaactgaag
     6541 aggcgacatc gcctcgtggt ccttttgaga tggttcttaa tcgaggcata tgtacactgt
     6601 ttggtgtttt tattgtgttg gcaggcgatt attttttatt tcaggcatac cgttattctc
     6661 ataggcttta tttttttcat caggtgatag tttatgattt tttaaatgat attgtgcgaa
     6721 aaatagacga atccaataca gaaaaaatta atacattgct ctttgtagag aaattacgtg
     6781 gccaattcac cgagcattat ctcccgatat ccatcagctc cgaaaatttg aaactggatt
     6841 ttaaaacaag tgaacacact aaaaaaagaa ttgatatttt tcaagaaacg atttgggaaa
     6901 tacgacgctt ggtttttgca ttatgtattt cagagtttgt tttacattcc tcaacggcat
     6961 ctgaacagca tttgcaacga tttaagttac tgatgaataa agctcgaacc cattttattc
     7021 agtttgaagg tcgttattaa ttagaaatag ggagtacaaa tatgtctcat cctcattata
     7081 gtgtttataa cgagaagtgc ccatcacaaa atgtacttga aggtataagt gataaatggt
     7141 ctatattggt cattagcctt ttatcccaaa aaatataccg ttttggagag ttaaaacgtg
     7201 aaatcggtgg aatatcacct aaaatgttga cgcaaacatt actgaaattg gagcgatatg
     7261 gctttgtcca aagacaatct tatcctgttt tacctatgaa ggttgagtat tcattaacca
     7321 gattgggtaa ggaattaagt gccatattgg ttttacttac tcgttggact gaaaccaata
     7381 tggataaaat aatcaatgcg gaaaaaacat tttgcgaaca gaggcttggt tgtcatgctt
     7441 gatttattga aaccatttga ttaaagtttc cgaacctaaa tggtcatgga tataggttaa
     7501 atagcgggtc aactccagag tataatcctc ttcagaaaca ggggtatttt ccccaattaa
     7561 agggtcatga tgaaaaaaaa ttccgttgag acgggtatca caaaactcat gataatctct
     7621 ggtgaataaa agaaaagtat gccacatctt gtcaatatca gccatttcag catgaatgac
     7681 acaagagaaa tccagatttt tatcatcagg ataaagtaat ttatctgttt tatgtttatg
     7741 gcagagccaa ataaatttca ttaattcatg taatgcctct tcagcttgca tggctgcagt
     7801 tgggtaatcc atattatatc tggtaataat tttatgattt ctgtaatcaa gtaagtcttt
     7861 taagtcagga tgcatgatta tggggctttg attagtataa gtgtaacggc acgttttttg
     7921 gtaacgtgcc atcattgcag ttatatcatc caatacaagt tcctgggcca caccatcctc
     7981 tattcctttt tagcagtttt ttctggacaa ttttcttaat gagtttttct ttcataattc
     8041 actcctttat tttataaaat gaacgggttc gagactaaaa tatttaataa aatcagtcaa
     8101 ttagttacct tttggtaact agaggggata cagtaaatga ataaaagaaa ttggacggct
     8161 tattataatt ctacgaaaca aaacactctc cccagaaagt ctttgcttaa agcaattgca
     8221 aattttgata aggaaaagat caatctatct aaatcggcaa tcgatttggg atgtggtgct
     8281 ggtatcgatg ttatggaact tttgcgatgc ggttggtctg tgattgccat tgattcacaa
     8341 ttatctgcta tagacagttt gctttcttca gctcaagaat taacatgcgc aaacaaatta
     8401 aaaacaataa tttcttcatt tgaggctttg gattcactcc ctaaagtaaa cttgattaac
     8461 gccagcttta gccttccatt tctcaagcca gtttactttt ataaattctg gagcgttatt
     8521 ttaaaagggc ttaagccagg tggtcgattt tctggttcgt tttttggttt taatgacttc
     8581 tggaacacca gaacggatat gactttttta aatcgggaaa tgatttgcca tttgttttcc
     8641 caattcaaaa ttgaatattt tcaagaagaa gaaaaggatg aaatggatgc tttgggttat
     8701 tataagcatt ggcataaatt ttttattgta gccaaaaaaa tcgcataaat gggtaatcat
     8761 aaaattgtat gtattggctt agaaggcaca atcaagttct tatgagttga gagttatata
     8821 tgagagttat ataaaggaga gaggcggggg tgccaagaaa cgccaaatag taaatttggt
     8881 gcttcttgac gacttaatag ataggataaa aaatttaaag tgcgttttta ggggtatcta
     8941 tgccagcttc ttcaaaacga ctctctggaa cttttcttga aggaggtatt tctccaccgg
     9001 tcataaagaa aagactaatg gaatctttta aattttgttg atcgtatgtt tcttttgagc
     9061 tgaactgccc cctaatttta ttgagcagat tggtaagtac ttcagtagag ccatggatgg
     9121 ttggagcatc tacttctcta tcaacaattg gataaactga ttgcagcaat tgcatgtaat
     9181 cgtactttac tataccaccg aagcgattga ttaattgtga tttccttgct tgttctccaa
     9241 agcgattacc ttcagcatca catttagaag aaacagcttc caaaccaccc attaatttaa
     9301 taatttcaca ggtgttttta attttatctt cagtcaggta tttgatattg gtgctattca
     9361 ccagcaggaa atgtggtgct tgttctgaaa tgggggcatt gtgttggact aagtacttga
     9421 ataattgaag atcctgattt ttacaagcca attcaattgg tgtctctttg tgatagttga
     9481 taggataatc aaaatcaaca tggtgcttaa ccaaaatatc aagcattttg tagtcaatgt
     9541 gttttttatt taatactcta gccaggggtg aatcataagt ggggggggcg tactgattta
     9601 caagctcagg atctttatcc agtatagtat tgacagtttc ataatgacct tcagatactg
     9661 ccttcatcaa ttcacgcaat tcagctgatg ctattttcat ttcacttcta cccattttaa
     9721 tcacctattt taaactatcg ccatagtatt ctaaaaatca aactggctga atcttagca
//
LOCUS       DACVWI010000112         9720 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.112, whole genome shotgun sequence.
ACCESSION   DACVWI010000112 DACVWI010000000
VERSION     DACVWI010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 9720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9720
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.112"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            78..470
                     /locus_tag="JBH85_10065"
     CDS             78..470
                     /locus_tag="JBH85_10065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946545.1"
                     /translation="MNLMLKGLSALAISLGAATTFAAPAYLTTHNRTGEESNAYIAGS
                     IPSLYPTAAYSTNQVYWNLVRLACYGHTTNGQCPALIKMATNTANPIDIGYVTMDLNT
                     GDITPKTLSAKGYSLRVIGPGEAEITKN"
     gene            complement(768..2246)
                     /locus_tag="JBH85_10070"
     CDS             complement(768..2246)
                     /locus_tag="JBH85_10070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAU0946546.1"
                     /translation="MNWDVIKRKECGVKIRHKPLRTLVSTAVLGVLATGTLNAGGFSL
                     YTEGAGYTTGNFAAGVAAEAADASTGWYNPAGLVLIRDQQAVFAGVGVFPTAKLSGVS
                     TYSTINPPPFPSFVYSEVFNNINGAEDAFVPSFHYALPLGENATFGLSVVSPFGLATD
                     WGPDSPVRYQATFTELITTNISPEIGGRLTEHVALGAGLDLQYARVKYNRILGVPNIL
                     NVLPPFNPMLADSLTYNKGHSFGVGFHVGVLGMFNDNHTRLGANYQSSMRHEFYGYSR
                     LTGPLASPGNILAPFLFPAPGIFQSDDLFSNSIDFPDVVTISAYHDVNDKLALLGSLV
                     YTAWSSYKTVQLSNAAAGRPADNGNVSQAKAISISPQNYNDTLRVAIGANYHVNDKLM
                     LRVGGGYDPTPTNNIDRDVRLPDTDRWALSAGAHYQATNNIGLDIGYTHLFTSSDPVI
                     NRTDAFTATTRYNVTASGTAGANLVGVQATWTIDKEPPAPTK"
     gene            2532..5111
                     /locus_tag="JBH85_10075"
     CDS             2532..5111
                     /locus_tag="JBH85_10075"
                     /EC_number="2.7.2.4"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/diaminopimelate
                     decarboxylase"
                     /protein_id="HAU0946547.1"
                     /translation="MSGILIMQQVVIKFGGTSVSTRATWNNIAAITQKHLNTGVQPVI
                     VCSALTQISNKLEKAIEAALLDEHHSLFNDIQSSHLNLAEQLEVNHQLIANDLHQLQQ
                     WLTGISLLKQAPAKTHAQILSLGELMMTRLGHAFLEKQGIKVKWYDARELLTSTPTLG
                     GETMNYLSARCESEYDSALVEKFLSSGAQAIITQGFFAANPHGETVLLGRGGSDTSAA
                     LLAGKLQAASCEIWTDVPGIYTANPHQLPHARLLKQLNYDEAQEIASMGAKVLHPNCI
                     PPVRKANIPMVVKYTHLPEHSGTLITKDIDESAPLIKSIQVKHSILLISIDTLNMWQQ
                     VGFLADVFAAFKKHGFSVDLLSSSEFNVTLSLDVNAKIHDRPAINALLDDLNQFGRAK
                     LIEPCSAVSLVGHHIRTVLPHLGPALEVFEAKQVYLMSLASNDLNLTFVVDESHADKL
                     CQRLHHLLIESNPQIFYYSKSWHEEFGKPNVRPTPWWEIERDRLLTTSAIHSPCYVYH
                     SPTQATRARQLSALESIDSLFYAIKANPFPTILKTLEKEGIGFECVSIQELELVLKLF
                     PNIKKERILFTPNFAPKSEYEFALQTGCYVTIDSLYPLENWPDLFKDREVIVRIDPGT
                     GAGHHKHVSTGGNESKFGITQNDISKILSLTKVNHIKVIGLHAHSGSGILSTDLWQQT
                     AVMLASLTDQFPEVRSINLGGGLGIVEKPGQHPIDFAALDAQLMAVKSQYPGLAIWLE
                     PGRFFVAESGVILAKVTQCKEKGKVKFIGIETGMNSLIRPSLYGAYHEIVNLTRLHEE
                     KAGFAHIVGPICESGDTLGYDRLLPVTREGDVILIANTGAYGHCMSSHYNLRPPAQEI
                     VLE"
     gene            5116..8346
                     /locus_tag="JBH85_10080"
     CDS             5116..8346
                     /locus_tag="JBH85_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAU0946548.1"
                     /translation="MRLIDSEQRSQATDPAESFIVQAPAGSGKTEILTQRFLRLLSTV
                     QSPEQIIALTFTRKAASEMRERIVQALHMAASNQPAVSAHQQSTLNFAKQALQRNNQY
                     QWDLLEQPNRLKIITIDSLCQSINRAIPLLEKQVAYPDISETPDSHYISAARCCIQYA
                     IATPEYQEAIKTLLLHVDNKQERLIQLFQALLSQRDQWLPTLFLAREQEKSTFEQALR
                     LIEQHELSRLRNSLPSDLAQELVLLSRELAVIENKPDSPRFILREWYEFQKCDQQIAG
                     ALSKLLLTSDNQLRKSFDHHVGLVKKNCAPNEFTRIKTASSDLFAKLQDCPDFLDALL
                     KVNQLPTPEYDKEQWDVLQALFLLLPLLVGHLQVSFGEHNEVDFTAISQQALAALGDL
                     DNPTDLALYLDHSIHHLLIDEFQDTSITQFELLTKLVQGWLPGEGKTLFLVGDPMQSI
                     YRFRQAEVGLFFQAKEHGIGPVRLKSLELRCNFRSTETIVNWVNDHFSKIFSQQVDIE
                     SGAVSFHPSVHVIEKNESSTIQAVQFKNREQEARHLIEIINSELNRNPEQTIAVLVRT
                     RTQLPEIISLLRQNNIPYQGTDIDLLANLVHLRDVWSLAHALLFPGNRLSWLSILHSP
                     YVGLGLSDIHCIAQYNSRKSIYHNLLHLDKIQDISEEGRIRANFFIQIMNQALLCRSH
                     SRLSDWIADTLKNLHVEKILDKAQLNDLEQLWMLLDQYEKEGRIPDMNEFLNEFNKLY
                     AQQTTPSRLQIMTIHKSKGLEFDTVILPGLGSQANRGESPMLRWLKLPTQDHGNLLLV
                     SPIKSANQDNCPLYDYLDQLDEEKSAYEAQRLLYVAVTRAKSRLYLLDHSAKSYKSSF
                     RNLLKYQEFIADPDEAQHEEQEFPLPKLVKLPIEYYQKQIPSLVQSQESSCPEISSGI
                     PRLIGIVSHQLLQWICDNHPQTINHVPWNLVHNELKALGLNQEAQQTALSMIKIQISQ
                     MYENKIGLWILSRHENEQNEYELLVEYENKLVTRIIDRTFTENGTQWIIDFKTGKEDI
                     NTLQKHRQQLNEYGRYLSDCTKFPIRCGLYYLANGHWIDWQYKMSA"
     gene            8553..9626
                     /gene="apbC"
                     /locus_tag="JBH85_10085"
     CDS             8553..9626
                     /gene="apbC"
                     /locus_tag="JBH85_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HAU0946549.1"
                     /translation="MTIEDTVIKLIGSLKDPLLDLTGKEMNLQYKITTSNQAMHVVLT
                     AGYPTSLLETSYKPIVQKIVQDEFPNYQVTISIQQFIKAHKTQLTGKALRGVKNTIAV
                     ASGKGGVGKSTVTVNLAAALAKLGARVGILDADIYGPSIPLMLGETKPVQVKDNCYIP
                     VEAHGMQAMSIGYLTDTNQALIWRGPMLAKSLIQMLDITLWNELDYLFIDLPPGTGDI
                     QLTLVQKIPLTSAIVVTTPQNVATLDAQKAITMFSRTGIDVLGIIENMSTHICSHCGH
                     QEAIFGRGGAAALCDAYQCTLLGQLPLDSHVRRHCDEGVPTATHSSNQLTDTFIKTAM
                     RTAIELSKKPINYADRFPKIVVE"
BASE COUNT         3125 a         2023 c         1813 g         2759 t
ORIGIN      
        1 gcctcatcta taacaaatct catatagtaa atgggattgg cattgcctaa tcaactacaa
       61 tctagaagga gaaatcaatg aatttaatgc ttaaaggttt atcggcctta gcaattagtc
      121 tcggtgctgc aacaactttt gcagctccag cttatttaac aacccataac agaactggtg
      181 aagaatccaa tgcctacata gcaggcagca tcccctctct ttacccaaca gcagcttact
      241 ctaccaatca agtgtattgg aatttagtga gattggcttg ctatggacat acaactaatg
      301 gtcaatgccc tgccttaatt aaaatggcaa ccaatacagc taacccaatt gatatcggat
      361 acgttaccat ggatctgaat actggcgata ttactcccaa gacgctatcg gctaaaggct
      421 attcgctgag agtaatagga cctggagagg ctgaaattac taaaaactag tcaattgtct
      481 ccatttgttt tgaatagctt atgtaggttg aacgctaata caacctacat aatcaataca
      541 tgtaaatact tacgtttatc ttaattaaga ttaattatct cagcacacga ttatctaaac
      601 gttatttatc ccgacacaca taaaactaac agggcttata caaaacccca aggtcagtgc
      661 aaaaaatatt tcctaatttt agcgaagaga ttgggatttt tcataagttc tgactaataa
      721 aaaagccacg catatcacgt ggcttctaac aaggtcaaga gaaagcttta tttagtcggt
      781 gctggaggtt ctttatcaat agtccaagtt gcttgcacac ctactaaatt ggcacctgca
      841 gttccagatg ctgtaacgtt atatctggtt gttgcagtaa acgcatcagt cctgttaata
      901 actggatcac ttgaagtaaa taaatgggta tatccgatat cgagaccgat attattcgtt
      961 gcctgataat gagcgccagc agataaagcc caacgatctg tatccggtaa acgcacgtct
     1021 ctgtcaatat tgttcgtagg tgttggatca taaccaccgc ccacacgaag cattaattta
     1081 tcattaacat gataattggc accaatcgct acccgcaaag tatcgttata attctgcggt
     1141 gatatgctta tcgccttggc ttgggaaaca tttccattat ccgctggtct tccggcagct
     1201 gcattagaga gttgtactgt tttataacta ctccatgcag tataaactaa agagcctaac
     1261 agtgcaagtt tgtcattgac atcatgataa gcactaatag tcactacatc aggaaaatca
     1321 attgagttac taaataaatc atcgctttga aatatgccag gtgccgggaa caaaaatggc
     1381 gctaatatat tacctggact tgccaatggc cctgttagac gactgtagcc atagaattca
     1441 tgccgcattg atgactgata gtttgcaccg agacgagtat gattatcgtt aaacatgccc
     1501 agaacaccca catgaaaacc tactccaaaa gagtgtcctt tattgtaagt cagtgaatcg
     1561 gctaacatgg ggttaaaagg tggcaaaaca ttcagtatgt taggtactcc aagtatacga
     1621 ttgtatttaa ctctagcata ttgcaaatcc aaaccagccc ccaaagcaac gtgctctgtt
     1681 aatctaccac caatttcggg tgatatattg gtggtaatta actcagtaaa agtggcttga
     1741 tagcgcactg gagaatctgg gccccaatct gttgccaatc caaatggtga tacaacactt
     1801 aacccaaacg tagcattttc acccaatggc aaggcataat gaaacgaggg cacaaaagca
     1861 tcctcagccc cattgatatt attgaaaacc tcagaataaa caaaagaagg gaaagggggc
     1921 ggattaattg ttgagtaagt actaactccg cttaacttgg cagttgggaa tacaccgaca
     1981 cctgcaaata cagcttgctg atcgcggatt aataccaaac ctgctggatt ataccaacct
     2041 gtagaagcat ccgctgcttc agcagccaca ccggcagcga agttacctgt tgtatatcca
     2101 gctccttcgg tatacaaaga aaatccacct gcgtttaatg taccagtagc tagaactccg
     2161 agaacagcag tactcactag cgttcttaag ggtttgtgcc taattttcac tccacactcc
     2221 tttcgtttaa taacatccca attcatggta ataaaaatga taataaatga atttataatg
     2281 atttaaaacg gtaaaaaaaa attatttcct attttcttaa atttttataa aagttttaat
     2341 cataatgagt taatcaagtt aattatggta aaatcaaagg catatgataa atttttattc
     2401 gagcctacct ttcccaaccc atgctttgta gactcaactc gtgacttggg ttgtcttgag
     2461 aaaaatcttt tttaaattgg ggcttaatct acttgtacaa atactttagt ccatgctaag
     2521 gtgtattaat tttgagcgga atactaatca tgcaacaagt agtcatcaaa tttggcggca
     2581 ctagtgtttc aaccagagcc acttggaata atattgctgc aattacccaa aaacatctga
     2641 acacaggtgt tcagcccgtt atagtctgtt ctgctttaac tcaaatttcc aacaaacttg
     2701 aaaaagccat agaggcagcc cttcttgacg agcatcatag ccttttcaat gacattcaga
     2761 gcagtcacct gaatctggca gaacaattag aagtaaacca tcaattaatt gctaatgatt
     2821 tgcaccaatt acagcaatgg ctaaccggga tctccttact caaacaagca cctgcaaaaa
     2881 cacatgcgca aattttaagt ttgggtgagc tgatgatgac ccgcctgggc catgcctttc
     2941 ttgaaaaaca agggattaaa gtaaaatggt atgatgccag agaattgtta acaagcacac
     3001 caacccttgg tggagaaaca atgaactatc tctctgcccg ttgtgagagt gaatacgact
     3061 cggcattggt agaaaaattt ctctccagtg gggctcaagc cattattacc caaggttttt
     3121 ttgctgccaa tcctcatggt gaaaccgttt tgcttggtcg aggaggctct gatacttcag
     3181 cagcactact tgcgggaaaa ctacaggccg cttcttgtga aatatggact gatgtcccag
     3241 gcatttatac cgccaacccg catcaattac cccacgcccg attattaaag caattaaatt
     3301 atgatgaagc tcaggaaatt gcctcaatgg gggccaaagt tttacacccc aattgcatac
     3361 cacctgttcg aaaagccaat atccctatgg tagtcaaata cactcacctg cctgaacatt
     3421 caggaacatt gattaccaaa gacattgatg aatcggcacc cttaataaaa tccatccagg
     3481 ttaagcacag catactgcta atttctatag acactttgaa tatgtggcaa caagtaggat
     3541 ttctggctga tgtatttgcc gcctttaaaa agcatgggtt ttcagttgat ttgctttctt
     3601 cttctgaatt caatgtcacc ctatccctgg atgttaatgc caaaatacat gatagaccag
     3661 caattaatgc cttgctcgac gatttaaacc aatttggacg cgccaaactg atagaaccct
     3721 gtagtgctgt cagtttggta ggacatcaca tccgaactgt attacctcat cttggcccgg
     3781 ctttggaagt atttgaggca aaacaagtat acctgatgtc tctggcctcg aatgacctta
     3841 atttgacttt tgttgttgat gaatcacatg ccgataaatt atgccaaaga ttgcatcatc
     3901 tactaatcga aagtaatcct caaatctttt attactccaa aagctggcat gaagaatttg
     3961 gcaaacccaa tgttcgccca acaccttggt gggaaattga aagagaccgc ttgcttacaa
     4021 ccagcgcaat acattctcct tgttatgttt accatagtcc cacccaggca actcgtgcaa
     4081 gacaattatc tgctctggaa tcaattgata gcttgtttta cgctattaaa gcgaatccat
     4141 tcccaaccat tttaaaaact ctggaaaaag aagggatagg ttttgaatgc gtttctattc
     4201 aggaattgga attggtgtta aaactgtttc ccaatattaa aaaagaaaga attttattca
     4261 cacccaattt cgctcccaaa tccgagtatg aatttgcttt gcaaacgggc tgttatgtga
     4321 ctattgatag cttataccct ttggaaaatt ggcctgactt gtttaaagac cgcgaagtaa
     4381 tcgttcgcat agatcctggt acaggagctg gccatcacaa gcacgtttct actggtggaa
     4441 atgaatccaa atttggtata acacaaaatg acataagcaa gattctatca cttaccaaag
     4501 tcaaccacat taaggtcata ggcttacatg ctcattctgg tagtggcata ctctcaacgg
     4561 atttatggca acaaactgcc gtgatgcttg cctccctaac cgatcaattt cctgaagtgc
     4621 gttcaattaa tttaggtggc ggtctaggta ttgtagaaaa accgggccaa catcccattg
     4681 attttgctgc gcttgacgcg caattaatgg cagtaaaatc tcaatatcca ggattagcaa
     4741 tctggcttga accaggtcgc ttctttgtag ctgaaagtgg tgtcattctt gccaaagtaa
     4801 cgcaatgcaa agaaaaagga aaagtaaaat ttattggtat tgaaacagga atgaactcat
     4861 tgataaggcc ttccttatat ggtgcgtatc atgaaattgt caatttaact cgactacatg
     4921 aagaaaaggc cgggtttgct catatagttg gcccaatctg tgagtcggga gatacattgg
     4981 gttatgaccg cttattacca gttaccagag aaggcgatgt gatattaatt gcaaacactg
     5041 gagcctatgg tcactgtatg agttcacact acaatttaag accacctgct caggaaatag
     5101 ttctggaata atggcatgcg gttaattgat agtgaacaaa ggagccaagc gacagatcct
     5161 gctgaatcat ttatagtcca ggctcctgcc gggtcaggaa aaacagagat tcttacccaa
     5221 cgctttttac gtttgctaag cactgtgcag tctcctgaac aaattatcgc cttgactttt
     5281 acccgcaaag cagcaagtga aatgagagaa cgaatcgttc aggcattaca tatggccgcg
     5341 tcaaatcaac cggctgtcag cgctcatcaa caaagcactt taaattttgc aaaacaggct
     5401 ttacagcgaa ataatcaata tcagtgggat ttacttgagc aaccaaatcg cttaaaaatc
     5461 ataaccattg attcattgtg ccaaagcatt aacagggcaa ttcctttatt ggaaaaacag
     5521 gtggcttatc cagacatttc cgagacaccc gattctcatt atattagtgc tgcacgttgt
     5581 tgtatccagt atgctattgc tacgccagag taccaggaag caattaaaac cttgcttctt
     5641 catgttgata ataaacagga acgattaatt caattattcc aggcacttct tagccaaaga
     5701 gatcaatggt tgccgacatt atttctggca cgtgaacaag aaaagtcaac ttttgagcaa
     5761 gctttacgcc ttattgaaca gcatgaactc tctcgtctaa gaaatagcct gccatcggac
     5821 ttggctcaag aactagtgct tttgtcgcgt gaattagccg ttatagaaaa caaacctgat
     5881 tcaccacgat ttatattaag agaatggtat gagtttcaaa aatgcgatca gcaaattgca
     5941 ggtgctttaa gcaaattact cttaactagt gacaatcaat tgcgtaaatc gtttgatcat
     6001 catgtgggat tagttaaaaa aaattgtgca ccaaatgaat ttaccagaat aaaaacagcc
     6061 agttcagatt tgtttgctaa acttcaagat tgtcctgatt tcctggacgc gctccttaag
     6121 gtcaatcaat taccaactcc tgaatacgac aaagagcaat gggacgtttt gcaagcactc
     6181 tttttgttac tgccattatt ggttggacat ttacaagttt catttggtga acataacgaa
     6241 gttgatttta ctgccatctc tcaacaagcc ttggcagctt tgggtgattt ggataatccg
     6301 actgatttgg cactctatct ggatcattca attcatcatc ttctaataga tgagtttcaa
     6361 gatacctcca ttacacaatt tgaattactt accaagttag tccaaggatg gttacctgga
     6421 gagggaaaaa ccttattcct tgtaggcgat cctatgcaat ccatctaccg tttcagacag
     6481 gctgaagttg gattgttttt tcaggcgaaa gagcatggca taggaccagt tcgcctcaaa
     6541 tcattggaac taagatgtaa tttccgttcg acagaaacaa tagttaattg ggtaaatgat
     6601 catttcagta aaatattttc tcaacaagtt gatatcgaat caggagcagt atctttccat
     6661 ccttctgttc atgtcatcga gaagaatgaa tcaagcacta ttcaggccgt gcaatttaaa
     6721 aatcgtgaac aggaagcaag gcatttaatt gaaataatta atagtgaatt aaaccgcaac
     6781 cctgaacaaa ctatcgcagt tttagtgagg acaagaacgc aactccctga aatcattagc
     6841 ctacttcgcc aaaataatat cccttatcag ggaacagaca tcgatttact agccaattta
     6901 gtgcatttac gtgacgtctg gtcacttgct catgccctgc ttttcccagg aaatcgattg
     6961 tcctggttat cgatactcca cagcccttat gttggattgg gattatctga catccactgc
     7021 atagcccaat ataattcaag aaaatcaatt tatcacaatt tgctccattt agataaaatt
     7081 caggatataa gtgaagaagg caggattaga gccaattttt ttattcaaat catgaaccag
     7141 gctttgttat gtcgatcaca tagtcgtcta tctgattgga tagcggatac cttaaaaaat
     7201 cttcatgtag aaaagatcct tgataaagct cagttaaatg atctggagca attatggatg
     7261 ttattagacc aatatgaaaa agaaggtcga attcctgata tgaacgaatt tttaaatgaa
     7321 ttcaataaat tgtatgccca acaaaccacc ccttcccggt tacaaatcat gactattcat
     7381 aaatccaaag gactggaatt cgatacggtt attctacctg gccttgggtc acaagcaaat
     7441 cgtggtgaat ctcccatgtt gcgctggctt aagctgccta cccaagacca tggcaacttg
     7501 ttactggtat cacccataaa aagtgcaaac caggataatt gccctttgta cgattatctg
     7561 gatcaattgg atgaagaaaa atccgcctat gaggcgcaaa gattacttta tgttgctgtt
     7621 acccgggcaa aatcaagatt atatttgctt gatcattcgg caaaatccta taaatcttcc
     7681 tttcgaaact tattaaaata ccaggaattc attgcagatc ctgacgaagc ccaacatgaa
     7741 gaacaagaat tccctctgcc gaaattagtc aaactaccta tagagtatta tcaaaaacag
     7801 attcccagtt tagttcaatc tcaagagagt tcatgcccag agatatcttc gggtattcct
     7861 cggctaatag gcattgtgtc ccatcaacta ttacaatgga tttgtgataa ccatccccaa
     7921 acaattaatc atgtgccatg gaacttggta cataatgaac ttaaagcatt aggattaaac
     7981 caggaagccc aacaaactgc tctatcaatg ataaaaatcc aaatttctca aatgtatgaa
     8041 aataaaattg gcctctggat tttatccaga catgaaaatg aacaaaatga atatgagctt
     8101 ctggttgagt atgaaaataa attggttacc cgtattatcg atcgtacttt tactgaaaat
     8161 ggcacacaat ggatcattga ttttaaaacc gggaaagaag atataaacac cttacagaag
     8221 catcgccaac aattaaatga gtacgggcgc tatctgtcag attgcacaaa attcccaatt
     8281 cgatgtggat tgtattatct tgcaaatgga cattggattg attggcagta taaaatgagc
     8341 gcttaaaaac acagcagcta tgcaattgcc caataaaatc aaatgacatt atcttaagct
     8401 attcgtctta ctcatcagaa aagctatacc caaaatacat ttctctcaag tagatgcatt
     8461 catcaaccca gcaaaaacga atagtaatgg tactagtgat tagccgagac ctaagttatc
     8521 attacctatt tattttcata ccaggctaaa aaatgactat tgaagataca gtaattaagt
     8581 taattggctc attaaaggat cctttgcttg atcttactgg caaagaaatg aatctacagt
     8641 acaaaataac aactagcaac caggctatgc atgttgtctt gactgccgga tatcctacct
     8701 ctttgttaga aacgagctat aaaccaatag tacagaaaat agttcaagat gaattcccca
     8761 attaccaagt tactatttct attcagcagt tcataaaagc gcataaaact cagttgacag
     8821 gcaaagccct gcgaggagta aagaatacta tcgcagtggc ctctggcaaa ggaggggtcg
     8881 gaaagtctac tgtcacagta aatcttgcag cagcattggc aaaactgggt gctcgagtcg
     8941 gcattttgga tgcggatatt tatggaccaa gcataccatt gatgcttggt gaaacaaaac
     9001 ctgtacaagt aaaagataat tgctacatac cggttgaagc tcatggcatg caggccatgt
     9061 ctattggcta cttgaccgat acaaaccagg cattaatttg gagaggtcct atgctcgcca
     9121 agtctttaat ccaaatgtta gacatcactc tttggaatga attggattat ttattcatag
     9181 atctaccacc tggcactgga gatattcaac tcactttggt acaaaaaatt cctttaacct
     9241 ctgccatagt agttactact cctcaaaatg tcgcaacttt agatgcccaa aaggcaataa
     9301 ccatgttttc cagaacaggc attgacgtac ttggaataat agaaaatatg tccacccaca
     9361 tttgtagcca ttgtggtcat caagaagcaa tctttggtag aggtggtgca gctgcgctgt
     9421 gtgacgcata tcaatgtaca ttattaggtc aactgccgct ggacagccat gtacgtagac
     9481 attgcgatga gggagttccc acggcaacac attcatcaaa tcaattaact gacaccttta
     9541 ttaaaacagc gatgcgaact gcaattgagc tcagcaagaa acccataaac tatgctgaca
     9601 gatttccaaa gatagttgtg gaatagaagt aatagcttct ctactatgta ttattccctt
     9661 cagatgagta tataatacat aaaaattgag tttgccacct caaagataac caagctcaca
//
LOCUS       DACVWI010000113         9516 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.113, whole genome shotgun sequence.
ACCESSION   DACVWI010000113 DACVWI010000000
VERSION     DACVWI010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 9516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9516
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.113"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1132)
                     /locus_tag="JBH85_10090"
     CDS             complement(<1..1132)
                     /locus_tag="JBH85_10090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1692 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946550.1"
                     /translation="MARSKEEKALEPKDAENKFRVLTSDVAGNIPTHSSVTDVLNLIY
                     SSITTHNLFKPHLEPLKAKACVVQGDLATLILIAQRNPAALFQKGNITDPRERTFYNV
                     SAWQLILFLCDVDMKNQLMPFIPEQFKAIAQKQTNELGSGGADLIKLSRDPQAVAFED
                     FDGLTQFKQTLPLIDGTRKEVTFPLLENVDGIVYFQDKNKEVHFYYANRESKTITSLV
                     PDLKSEEDKQLFAAFKASFDAMENNSSRRSSDTEHQLIAKLFNAKPQRQGIQYEHQGI
                     RYQDSRTSFSLINAYRTSIRLYDEVQNYQYEKADTYWREVVGKAQGEEMWLLERICEE
                     GRPFHPLPADFKEFKRGFTFYNWITNKVESAFAGGKLAVGLGS"
     gene            complement(1426..2820)
                     /locus_tag="JBH85_10095"
     CDS             complement(1426..2820)
                     /locus_tag="JBH85_10095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAU0946551.1"
                     /translation="MNHSKKVLNVFSLVMINVIAVDSLRTLPISAKLGFSLVFYYIFA
                     ALTFFIPVALVAAELATAYPNTGGIYVWVREAFGRRAGFITIWLQWIYNVVWYPTMLA
                     FIAATLSYLIAPHLGNNKFYLLGTALTLFWVFTFLNCFGMKLSSIVSIIGASIGTLLP
                     MIVIIVLGAVWIFQDRPVAVNYPTTWLPDFSSLGNLSLFSAVLFGLIGMEMSAVHAEE
                     VKNPQRDYPKALFYSALLIISTLSLGSLAIVIVVPNDSLSVVSGLVDAYAIFFNSYNM
                     PWMTSVIAVLIILGGLSGVSAWIIGPTKGLLVSARDGSLPALFSRVNKYGSPVAILLT
                     QGVIFTVLSTVFILLDSINAAYWVLSDLSAQMALLVYIMMFAAAIKLRYSKPEQPRGY
                     TIPGGNLVMSLISGIGIICCIAAMIVGFIPPSQIPIKNVFLFECFLIGGLILFVFIPW
                     LFAKKHDEQLCSEE"
     gene            complement(3085..5760)
                     /gene="acnA"
                     /locus_tag="JBH85_10100"
     CDS             complement(3085..5760)
                     /gene="acnA"
                     /locus_tag="JBH85_10100"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HAU0946552.1"
                     /translation="MKVGQDSLSTKSQLTVDGKTYNYYSLKEAENKHFKGINRLPYSL
                     KVLLENLLRFEDGNTVTTKDIKAIADWLHNKTSQHEIAFRPTRVLMQDFTGVPAVVDL
                     AAMRTAIVKMGGNADKISPLSPVDLVIDHSVMVDKFASADALEVNTKIEIERNKERYE
                     FLRWGQKAFSNFQVVPPGTGICHQVNLEYLGKTVWNSENDGQLYAYPDTLVGTDSHTT
                     MINGLGVLGWGVGGIEAEAAMLGQPVSMLIPEVIGFKLSGKLKEGITATDLVLTVTQM
                     LRKKGVVGKFVEFYGPGLNDLPLADRATISNMAPEYGATCGFFPVDKETIKYLELTGR
                     DKHTIALVEAYAKAQGMWYDKDNEEPVFTDSLHLDLGSVEPSLAGPKRPQDKVNLSSL
                     PVEFNNFLIEVGKEKEKEKTFAVKNKDFQMKHGHVVIAAITSCTNTSNPSVLMAAGLV
                     AKKAIEKGLQRKPWVKSSLAPGSKVVTDYLRHAGLQTYLDQLGFNLVGYGCTTCIGNS
                     GPLPDDISHCVAEHDLVVSSVLSGNRNFEGRVHPQVRANWLASPPLVVAYALCGTTCS
                     DLSREPIGQDKEGNDVYLKDIWPSNEEIAAEVAKVSGTMFRKEYAEVFKGDAHWQAIQ
                     TSSGQTYEWNPDSTYIQHPPFFENLSLKPEPLKPIKQAYVLALFGDSITTDHISPAGS
                     IKASSPAGLYLKSKGVDEKDFNSYGSRRGNHEVMMRGTFANIRIRNEMTPGQEGGVTR
                     YVPTGETMSIYDAAMRYQENQQDLVIIAGKEYGTGSSRDWAAKGTNLLGVKAVITESF
                     ERIHRSNLIGMGILPLQFKEGTTRKTLKLDGSERISIEISDKLTPGAMVPVTIERQDG
                     DIEKIETLCRIDTADELEYYKNGGILQYVLRKISS"
     gene            complement(5845..6471)
                     /locus_tag="JBH85_10105"
     CDS             complement(5845..6471)
                     /locus_tag="JBH85_10105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1689 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946553.1"
                     /translation="MYHYLFSCHKSQESIDGLIEQVKQLLNHVEMEQKAYFLNLLTAR
                     VAEFQNELKSEASNTINKQQILIQYEKFAKTLLICIKQPERTSYAIHNYHKGFYYPVA
                     IHDKIKPDPTIENAAIATLGVSLALLLGSIPTFIFNPLFGVIMVSLAVTLLLPSGFYL
                     LIPDSPDTTSKKEEEKRIFMEGAKIINPDVRIEEFDEQPYLSSSLIKT"
     gene            6655..7899
                     /locus_tag="JBH85_10110"
     CDS             6655..7899
                     /locus_tag="JBH85_10110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HAU0946554.1"
                     /translation="MSDLKNLILNSSILLDTSSTVQNDLNPEQLINVHEDSDGGRDLL
                     TPESFILLMAEILSTNNADTICEYEHQNSADNKVLQNLQFKEVEEDEQIEGLNEQKKS
                     LDNPLWHDVDLPVINEISGNQCEGQFESTLEKNVALTWINSENFQPPIVKPENQTDET
                     YKIWDSEITSIESGKLKLDFPKADYDGNNINPYQKEAINQPGNDSSKNHQLIKGNDSF
                     PILEDIKTNAEPGTKAIKSEVEATKVGTEIPGSSFQMNQKAGSDIQPPVVSNSHIPKN
                     FSIPIHVNHSQWSEQLSEHIVWLGHQDVKSALIKIHPEELGPLEINVKVVKDNASVNI
                     STHSVYVKEIVDQAIPRLREMMAQQGINLSEVHIGTDTSSRQGSQKNHHAEIDLIQSA
                     EDKNKITSLTRHLPKGLVDYFA"
     gene            7936..9138
                     /gene="mavA"
                     /locus_tag="JBH85_10115"
     CDS             7936..9138
                     /gene="mavA"
                     /locus_tag="JBH85_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavA"
                     /protein_id="HAU0946555.1"
                     /translation="MSHNYFRTCLTTKDNKFFWQKPLASERFDKLIADRKFQKSIAHS
                     RKNQLMYSFIESKIASDYALLIDTKLREQLKQFTLDDFNDISGFERKEKSNSRQQSYF
                     KLRQELEFFLKNDIQQHKSCPDAQLNAFRRWINISDLLLRHHCYEGFLLVFVNLQLIA
                     DKQLIDGLPVSVRNNYNQLCQLSSPIGNHGALRHFMNTHQGESDFTPLFFTYHAIGAL
                     DESLESLKDKEVLLKKQLKHLNKKISHLRTEATPGVIDVISELLKNKQQIPKKMMERR
                     GHLIQLMEEVRFTGKQLKQIQVNMQNQLEQRANLVGLIVKEQKATPRTLPEYFEKTYS
                     IIKYRFNRQSIATVKSSQLPESTASSNPSSSNLYKSKLLPHFWNRHGKSSSSYWEEVF
                     TPSCLNNK"
     gene            complement(9189..9506)
                     /locus_tag="JBH85_10120"
     CDS             complement(9189..9506)
                     /locus_tag="JBH85_10120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946556.1"
                     /translation="MKIVSAYVLRLFAILNLTFLLFITISFTNVASASNTNADQYLSG
                     NTQLAYFIGVHSYPGNYYWRGPVYYKNAYWTKWRYIGYGCQKSCLIDRWSGRVIRCAK
                     RCF"
BASE COUNT         3033 a         1798 c         1813 g         2872 t
ORIGIN      
        1 cagaacctag accgactgca agtttccccc ccgcgaaagc agattctacc ttgttggtaa
       61 tccaattata aaaggtaaat ccccgtttaa actctttaaa atctgcgggt aaagggtgga
      121 atggacggcc ttcttcacaa attcgctcta aaagccacat ctcttcacct tgtgctttac
      181 ctaccacttc gcgccaatag gtgtcggctt tttcatattg ataattttgt acttcgtcat
      241 acagtctaat acttgttcta taggcattaa tcaaactaaa tgaagtgcga ctatcctggt
      301 aacgtattcc ttggtgctca tactgaatgc cttgacgctg aggtttggca ttaaatagct
      361 ttgcaatcaa ttgatgctca gtatcacttg agcgacgact ggaattgttt tccatggcat
      421 caaaggaggc cttaaatgca gcaaataatt gtttatcttc ttctgacttg aggtctggta
      481 cgagagatgt aatcgttttg gactctcgat tcgcatagta gaaatgaact tctttattct
      541 tgtcttggaa ataaacaatc ccatcaacat tttcaagcaa tgggaaagtg acttcctttc
      601 gtgtcccatc aatgaggggg agagtttgtt taaattgagt taacccatcg aaatcttcaa
      661 aagccacggc ttgtgggtca cgggataatt taattaaatc agcgccgcca ctgccaagct
      721 cgttggtttg cttttgagct atggccttaa actgctctgg aatgaaaggc atcagttgat
      781 tcttcatgtc cacatcacac agaaacagga taagttgcca ggcagataca ttataaaaag
      841 ttcgctctct tgggtcggtg atatttccct tttggaataa cgcggcaggg ttgcgttgtg
      901 ctatcaatat taatgtagct aaatcgcctt gcacgacaca agccttggct tttaatggtt
      961 ctaaatgggg tttgaataag ttatgggtgg taatggaaga atagattaaa tttaatacgt
     1021 ccgttacaga ggaatgagtg ggtatatttc cagcaacatc gcttgttaag actctaaact
     1081 tattttctgc atcttttggt tctaatgcct tctcttcttt gctgcgtgcc atacatacat
     1141 tcggttattt tcacaatatg attgagcatt atacattaaa tttaatgttc atataaaaac
     1201 aatttaatgt ggcaaatatt atggcaatta tcgaaaggta gaaaacaata ctaagcagcc
     1261 ttggtgattt aaaaaagcat attatgcgtg agaatattgc gaaagaagag gctgtaaaac
     1321 tcgcagtttg aagtttattg ggtatattac aattgattaa caacttttaa gaatcatctt
     1381 gaaaagccca acaaaatttt ttgtgggctt acatttcttg ctcaattatt cttcactaca
     1441 taattgctcg tcgtgttttt tagcaaataa ccagggaatg aaaacaaata gaataaggcc
     1501 gccgatcaga aaacattcaa agagaaaaac attctttata gggatttgtg aaggggggat
     1561 aaatccgaca atcatagcag ctatgcagca gatgatccca attccagaga taagagacat
     1621 taccagattt ccaccaggaa tagtatagcc acgcggctgt tcgggcttgc tgtatcgcaa
     1681 tttaattgct gcagcgaaca tcatgatata taccaacaat gccatttgag cacttaaatc
     1741 gcttaatacc cagtacgcag cattaattga atcgagtaaa ataaagactg tacttaatac
     1801 agtaaatata acgccttgag tgagcagtat ggctaccggc gagccgtatt tattgacacg
     1861 ggaaaacagt gcaggtaagg aaccatcgcg tgcagacact agtaatcctt tggttggacc
     1921 tattatccag gctgaaacgc cactgaggcc tcctaaaata attaacacgg caatcactga
     1981 tgtcatccac ggcatattat aggaattaaa aaatatggcg taggcatcaa caaggcctga
     2041 cacaacactt aaactatcgt ttggtactac aataacaatt gccaaagaac ctaatgataa
     2101 ggtggatata attaaaagag ccgaataaaa aagtgctttt ggataatctc tttgcgggtt
     2161 ttttacttct tcagcatgaa cagcagacat ttccattcct ataaggccaa ataaaaccgc
     2221 tgaaaataaa gacagatttc ctaaagaact aaaatcaggt aaccatgttg tggggtaatt
     2281 gactgctaca ggtctatctt gaaatatcca aactgcgccc aggacaataa tcactatcat
     2341 aggaagtagt gtgcctatgg aggcgccgat aatacttaca atgctggata gtttcatgcc
     2401 aaagcaattc aaaaaagtaa acacccaaaa caaggtaagt gctgtgccta ataaataaaa
     2461 tttgttattc cccaaatgag gagcgattaa ataggataac gtggcggcga taaaagctaa
     2521 catagttgga taccaaacta cgttatagat ccattgcagc caaatagtga taaatcctgc
     2581 ccgtctcccg aatgcttccc tgacccagac ataaattccg ccggtattag gataggcggt
     2641 agcgagctct gcagcaacca atgctactgg aataaaaaag gtaagggctg caaaaatata
     2701 ataaaagacc agagaaaatc caagttttgc gctgataggc aaggtcctca aactatctac
     2761 agcaatgacg ttgatcataa ctaaagaaaa aacgttcaga accttttttg aatgattcat
     2821 tatttatcct ttatgagtgc aataaacccg ggtattgaat ggggtataaa tggtattatg
     2881 ataagttaac agagtaaaga aaagtttgtc tgtacagttt aattactgct taatatttat
     2941 aagttgttgg gtttctcctg attatggtat caatttttac tgatattctg atttcagctg
     3001 cctagtgatg cagtgttcat gcgtctctag atattttgtg aacccaacac tctaagggag
     3061 aagggcacgc aatgtgccca attgttaaga gcttattttg cgcaatacat actgaagtat
     3121 tccgccattt ttatagtatt cgagctcgtc agcagtatca attctacaaa gagtttctat
     3181 cttctcaatg tccccatctt gcctttctat ggttacaggt accatcgcgc ccggggttaa
     3241 tttatcagag atttcaatac tgatgcgttc gctaccatcc aattttaatg ttttacgagt
     3301 agtaccctct ttaaattgca atggcaatat acccatacca attaaattgg aacgatggat
     3361 tcgctcaaag ctttcagtaa tcacagcttt aacaccaagc aaattagtgc cttttgctgc
     3421 ccaatcgcga gaagagcctg ttccatattc tttaccagca atgataacca agtcttgttg
     3481 attttcctga taacgcatgg ctgcatcata aatcgacatg gtttctccag taggaacata
     3541 acgagtgacg ccaccttctt gtccaggagt catttcatta cgaatgcgta tattggcaaa
     3601 agtgcctcgc atcatgacct cgtggttacc gcggcgtgat ccataggagt taaaatcttt
     3661 ctcatctacc cctttggatt ttaaatataa gcctgctgga gagctggctt ttattgaacc
     3721 tgcaggtgaa atatgatccg ttgtaattga atcgccgaat agggctaaaa cataagcctg
     3781 cttgataggt ttgagcggtt ctggtttcag acttaaattt tcaaaaaatg gggggtgttg
     3841 tatgtatgta gaatcaggat tccattcata agtttgccct gagcttgttt gaatggcttg
     3901 ccaatgagca tctcctttaa atacttcagc atactcttta cggaacatgg taccgcttac
     3961 tttagcgact tccgcagcaa tctcttcatt agatggccag atatccttga gataaacatc
     4021 gtttccttct ttgtcttgcc caatgggttc cctgcttaaa tcgctgcaag ttgtaccgca
     4081 tagagcataa gcgactacta atgggggaga agccagccag ttggctctga cttgcgggtg
     4141 aacacgccct tcgaaatttc tattaccaga cagtacagat gaaacaacaa gatcatgctc
     4201 tgcaacacaa tgggaaatat catcaggcaa aggacccgaa ttacctatac aagtggtaca
     4261 gccgtaacca accaaattaa aacccagttg atccaggtag gtttgtaggc cggcatgcct
     4321 taaatagtca gtaactactt tagaaccagg tgccaatgaa gacttaaccc agggtttgcg
     4381 ctgtaatcct ttctcaatcg ctttttttgc taccagtcct gctgccatta gtacacttgg
     4441 attagaggtg ttagtacagc tggttatcgc tgcaatgact acatgaccat gtttcatttg
     4501 aaaatctttg tttttaacag caaaggtttt ttctttctct ttttctttac caacttcaat
     4561 taaaaaattg ttgaattcta caggtaatga actgagattg actttatctt gggggcgttt
     4621 tgggccagcc agagagggtt caacgctgcc taaatccaga tgtaaagagt cagtaaacac
     4681 aggttcttca ttgtctttgt cataccacat accttgtgct tttgcataag cctcaacaag
     4741 ggcaatggta tgcttgtcac gaccagttaa ttccaagtac tttattgttt ccttgtctac
     4801 cggaaagaag ccacatgttg cgccatactc gggagccata ttggaaattg tcgctctgtc
     4861 tgccaaaggt aaatcattaa gtccaggacc ataaaattca acaaatttac caacaacccc
     4921 tttttttcgc agcatttgag tgacggtaag gaccaaatca gttgcggtaa tgccttcttt
     4981 aagtttacct gataatttaa aaccgattac ttcggggatt agcatggata caggttgccc
     5041 cagcatggct gcttctgcct ctataccacc gactccccaa cccaggacac ctagtccatt
     5101 aatcatggtc gtgtgagaat ctgtgccgac caaagtgtcc ggataggcat acaactggcc
     5161 atcattttca ctattccaca cagtttttcc taaatactcc aggttgacct gatggcaaat
     5221 ccctgttccg ggtgggacga cctgaaagtt agaaaaagct ttttgtcccc agcgtaaaaa
     5281 ctcataacgt tctttatttc tttctatctc gattttggtg ttcacttcaa gggcatcagc
     5341 tgaagcaaat ttatctacca tgactgaatg gtctatgacc aaatcgacag gagaaagagg
     5401 agaaattttg tctgcgttac ctcccatttt tactatggca gtacgcatgg cagccaaatc
     5461 tactactgcg ggaacaccag tgaagtcttg catcaggact ctagttggtc taaatgctat
     5521 ttcatgctgg gatgttttat tatggagcca gtcggcaatt gccttgatgt ctttggtcgt
     5581 tactgtattg ccatcctcaa aacgtaataa attctcgaga agtactttca aggagtaagg
     5641 gaggcgatta attcctttaa aatgtttatt ttcagcttct ttcaaactat agtaattata
     5701 ggtttttcca tcaactgtta attgtgattt tgttgataga ctgtcttgac ccactttcat
     5761 aaagtactcc caaaatcatt attattaata atctctagga ataatagctc aatttcagga
     5821 agttttcatt cagtatcaac aaaatcatgt tttgattaat gaagaggaga ggtaaggttg
     5881 ttcatcaaat tcttcgattc taacatcagg attaatgatt tttgcacctt ccataaaaat
     5941 ccttttttct tcttcttttt tgcttgttgt atctggagaa tctgggatta gtaaataaaa
     6001 tccacttggt aacagcagtg tcaccgctag tgataccatg ataacaccaa agagtgggtt
     6061 aaaaatgaat gttggtattg aacccaaaag caaagcaagg cttactccaa gagtagctat
     6121 agctgcattt tctatagtgg gatcgggttt aattttatcg tgaatagcaa cgggataata
     6181 aaatccttta tggtaattgt gtattgcata ggatgttcgt tcaggttgct ttatgcaaat
     6241 gagcaaggtt ttcgcaaatt tttcatactg gataagtatc tgttgtttat taatagtatt
     6301 tgaggcctct gatttaagtt cgttttgaaa ttcggcaaca cgggcagtca acaaatttaa
     6361 aaaataagct ttttgttcca tttctacatg atttagtaat tgttttactt gttcaatcaa
     6421 gccatctata gattcctgag atttatggca gctgaataaa tagtgataca tgataaattt
     6481 ctctccctat aaaatatgtc aaaaaactag cattattttt ttaggggtta tagtgagtat
     6541 taagaggttt tacatgcatg caatattttt taactgtccc ttgattattt tttcagtaag
     6601 cttgcagatg gtatgagttt tgctatatgt taatcataac acagggagtg tgatatgtct
     6661 gatctgaaaa accttatact caattcatcc atcttattgg atacctcttc aacagttcaa
     6721 aatgatctaa atcctgagca attgattaat gttcatgaag attctgatgg tggcagggat
     6781 ttattaactc ctgaatcttt tatactgcta atggccgaaa tattatcaac aaataatgca
     6841 gatacaatat gcgaatatga gcatcaaaat tcagcagata ataaagtttt gcaaaatttg
     6901 caatttaaag aggtggaaga ggacgaacaa attgaaggac tcaatgagca aaaaaaatcc
     6961 ttagataatc cattgtggca tgatgttgat ttacctgtta ttaatgaaat atcaggtaat
     7021 caatgtgaag ggcagtttga atcaacacta gaaaaaaatg tggctttgac atggattaat
     7081 tctgaaaatt tccaaccacc aatagttaaa cctgaaaatc agacagatga gacttacaaa
     7141 atttgggact cggaaataac ttctattgaa tctggcaaac tgaaactgga ttttccaaaa
     7201 gcagattacg atgggaataa cattaaccct tatcaaaaag aggcaatcaa tcaaccgggg
     7261 aatgattcat cgaaaaatca tcaattaatt aaagggaatg actctttccc gatattagaa
     7321 gacattaaaa cgaatgctga gccaggaact aaagcaataa aatctgaagt agaggcaact
     7381 aaagtgggca ctgaaatacc tggtagttcc tttcaaatga accaaaaagc cggttcagat
     7441 attcaacccc cagttgtttc caactctcac atacctaaaa atttttcaat tccaattcat
     7501 gtcaatcatt cacaatggtc agagcaatta tctgaacata ttgtttggct tggtcatcaa
     7561 gatgtaaaaa gtgccttaat taaaattcat cctgaagaat tggggccttt ggaaattaat
     7621 gtaaaagttg taaaggataa tgcctctgtt aacatatcta ctcacagtgt ttatgtaaaa
     7681 gaaattgttg atcaagcgat tcccagatta agagagatga tggctcagca aggtataaac
     7741 ttgtctgagg tgcatattgg aaccgataca agttcccgcc aaggttcgca gaaaaaccat
     7801 catgctgaaa tagatcttat ccaatcagca gaagataaaa ataaaatcac ttcattaacc
     7861 aggcatctac ccaaaggact ggtcgactac tttgcttagt ttaacaaatc aattgttggt
     7921 aaggagttta caacagtgtc ccataattat tttcgtacct gtctgacgac aaaggacaat
     7981 aagttttttt ggcaaaaacc tttggcatca gaacggtttg acaagctgat tgctgataga
     8041 aaatttcaaa aatcaatagc tcacagcagg aaaaatcaat taatgtatag ttttatagag
     8101 tctaaaattg cctcagatta cgcactattg attgatacta aattaagaga gcaattgaaa
     8161 cagtttactc tggatgattt taatgatatt tcaggatttg aacgaaaaga aaaatcgaat
     8221 tccaggcaac aaagctattt caaattaagg caagagctgg aattttttct taaaaatgac
     8281 attcaacagc ataaatcttg ccctgacgct caattaaatg cgttcagacg ctggataaat
     8341 atatcggatt tactcttaag acatcattgt tatgaaggct ttcttttggt atttgttaat
     8401 ttgcaattaa ttgcagacaa acagttaatc gatggcttac ctgtaagcgt aagaaataat
     8461 tataatcaac tatgtcaatt aagttcacca atagggaatc atggcgcttt gcgccatttt
     8521 atgaatacgc atcagggtga gagtgatttt actcctttat tttttaccta tcatgccatt
     8581 ggagctttgg atgaatcgct tgaatcctta aaggacaagg aagttctttt aaaaaagcaa
     8641 ttaaaacatc tgaataaaaa aattagtcat ttaagaacag aagccactcc aggagtgatt
     8701 gatgtcattt ctgaattatt gaaaaataag caacaaatac caaaaaaaat gatggagcgt
     8761 agaggacatc tgatacagct gatggaagag gttagattca ctggaaaaca attaaaacaa
     8821 atacaagtta acatgcaaaa ccaacttgaa caacgcgcta atttggtagg attgatagtc
     8881 aaagaacaaa aagcaacgcc aagaacgctc cctgagtatt tcgaaaaaac ctatagtatt
     8941 atcaagtaca gattcaatag gcagtctatt gctacagtca aaagctctca gcttccagaa
     9001 tcaacagcaa gcagcaatcc aagttcctca aatttgtata aaagtaaatt gctcccccat
     9061 ttttggaata gacatggaaa atcttcctcc agttactggg aagaggtatt cacgccaagt
     9121 tgtttgaaca ataaataaga gaattagatg aactctgctt catacaagcc ctgtttatat
     9181 gaatttggtt aaaaacaacg tttggcacag cgaatgactc gaccactcca tcggtctatc
     9241 aggcagcttt tctggcaacc ataaccaata tatctccatt ttgtccagta agcgtttttg
     9301 taatatacgg ggccgcgcca gtagtagtta ccagggtagc tgtgaacccc aatgaagtaa
     9361 gcaagttgag tatttccgga aagatattga tcagcattag tgttgctggc acttgctaca
     9421 ttagtaaatg atatagtaat gaacaataga aaagttaagt tcagaatagc gaataatctc
     9481 aggacataag cacttactat tttcatgata aattcc
//
LOCUS       DACVWI010000114         9448 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.114, whole genome shotgun sequence.
ACCESSION   DACVWI010000114 DACVWI010000000
VERSION     DACVWI010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 9448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9448
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.114"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            6..1064
                     /gene="vipA"
                     /locus_tag="JBH85_10125"
     CDS             6..1064
                     /gene="vipA"
                     /locus_tag="JBH85_10125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector VipA"
                     /protein_id="HAU0946557.1"
                     /translation="MKHYDSMDQELITMPISNAFLKLFSEFVDNYARNGTPSFYHWAK
                     EQNHEVINKFFHELLEIIKSNTETFHDVSIIEHLNATVLLSAKTNPYLLDCWISFITK
                     YNAETNSFTPIGASMHIKVGPEGTPSERIIRELKESLVMTQQAFILAQKANATEVDSL
                     KRQLEQTKQENERLVTQNQFLKDQVRAEKTFADLNPQINNARQQLSALTELIQTLSEI
                     TNAKPKIETVSSLSIPVVTENKSELLKENSCSVASVSKEVTPAISQEPKKRPVPPPPN
                     DTDGQALSPNIPPKEDVSIKVTIPSMPKPNSTQPAAKNSGFFSGDGFLKELNAKIKER
                     KERPKDEPHTTPVEKKNL"
     gene            complement(1122..1235)
                     /locus_tag="JBH85_10130"
     CDS             complement(1122..1235)
                     /locus_tag="JBH85_10130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946558.1"
                     /translation="MDFNSSLTSNGLILGMKEELTLAMNHRYEDIFLLLHF"
     gene            1295..2209
                     /locus_tag="JBH85_10135"
     CDS             1295..2209
                     /locus_tag="JBH85_10135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0946559.1"
                     /translation="MHALEIKQLSKTYSNGVEALKGIDLTVNTGDFFALLGANGAGKS
                     TTIGLITSLVNKTSGNIKIYGFDLDAYPEKAKSCLGLVPQEVNLNIFENCEQILLNQA
                     GYYGISRKKAFPRAEALLEQLGLWDKRRSIVRHLSGGMKRRLMIARALIHQPKLLILD
                     EPTAGVDIEIRHSMWDFLARTNAEGTTIILTTHYLEEAEQLCKNIAIIDKGQIIKNTS
                     MKALLQTLRHQTFIFNTENPIDYLPDIHPFNVTPIDPTTFELRVDNNFSLNEVFSVLT
                     KQGIKIHSMRNKTNRLEELFMDLIKNGI"
     gene            2199..2972
                     /locus_tag="JBH85_10140"
     CDS             2199..2972
                     /locus_tag="JBH85_10140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0946560.1"
                     /translation="MGFKYQLIALYTLVRREVVRMFRISSQVFLPPVITTTLYFLIFG
                     SLIGPRIGDIEGVDYSQFIAPGLIMMSVIINSYGNVSNSLFSVRFQKSIEEMLISPMH
                     NGLLLLGYVIGGVLRGLIVAILVFVISTFFLPVELDHLPMTLLVVVLVAAIFSLAGFT
                     NAMVARNFDDIMLIPTFILTPLTYLGGVFYSINMLPPFWQKISLFNPILYMVNALRHT
                     MIDQEEVSITLAMIIIFLMLIALTVGNMILLKKGVGFRE"
     gene            complement(2999..4018)
                     /gene="htpX"
                     /locus_tag="JBH85_10145"
     CDS             complement(2999..4018)
                     /gene="htpX"
                     /locus_tag="JBH85_10145"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HAU0946561.1"
                     /translation="MGIADYHATAGDWRAQLRRNEKKTRRVIAVFFLVYIFVGLIVDA
                     FVLQSMYPHASLENIIHALITFKVVPFATLLMIAFAGISLLITYALYDRIMLLGTEYY
                     QITPETARSLQEKQLYNVVEEMKVASGLQYMPKVYIIEANYMNAFASGYSEKSAMVAI
                     TRGLMEKLDRAEMQAVMAHELSHIRHHDIKLTLMVAVLSNILLIVIDILFYSVIYKRD
                     RRGDNRLLMVIIILRYVLPIITVLLALFLSRTREYMADAGCVELMRDNEPMARALLKI
                     NQDHVQNAEQYAKAYGDTPHEQVRQASYLFDPSHIDPVKSLNNAFSTHPSIEQRLEAL
                     GFKRK"
     gene            complement(4029..4610)
                     /locus_tag="JBH85_10150"
     CDS             complement(4029..4610)
                     /locus_tag="JBH85_10150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HAU0946562.1"
                     /translation="MKTFFIAILIIIALAFVWAISIYNTLIGLIEAINNNKKQIDIQL
                     DRRFKVFESLIEAVKKYMDYEKTTLKDVVALRNQAQAAKDAGDEQGRIAAENGISKIA
                     SNLNLVFEQYPDLKASQNVMQLQEEIVNTENKLAYAKQAYNDGIERYNAKKKSFFESM
                     VVAMFSSALDKEFIYWGLPEEQIQAKENYTVKL"
     gene            complement(4793..7648)
                     /gene="uvrA"
                     /locus_tag="JBH85_10155"
     CDS             complement(4793..7648)
                     /gene="uvrA"
                     /locus_tag="JBH85_10155"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HAU0946563.1"
                     /translation="MHTITIRGARTHNLKNLDLELPRDKLIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSMMEKPDVDSIEGLSPAISIEQKATSHNPRSTVGTIT
                     EIYDYLRLLYARVGEPRCPTHHTSLHAQTISQMVDQVLALPEDSKVMILAPVIRERKG
                     EHVQFLQQLQAQGYVRARIDGELYELDSPPKLGLRTKHTIEVVIDRFKVRPDLAQRLS
                     ESFENALNLADGLVIVSSMDGHFNELLFSSRFACSECGYSLSELEPRLFSFNNPVGAC
                     SSCDGLGVDQFFDPSRVVHDATASLAEGAIRGWDRKTTYYFSMLESLARHYGFDTSTP
                     FCDLSEAMQQIVLYGSGREIIEFQYHRPHGGYMVKRHSFEGIIPNMQRRYRESDSGMI
                     REELAKYLSSRPCQSCQGARLREEARHVFIDNKNLPEITSYSIEQAYQFFKELKLSGY
                     RGEIAAKINKEIVERLGFLVNVGLDYLSLARSAETLSGGEAQRIRLASQIGSGLVGVM
                     YILDEPSIGLHQRDNDRLLSTLMHLRNQGNTVIVVEHDEDAIRSADFVLDIGPGAGVH
                     GGEVVASGSPEEVMNNPASLTGQYLSGKKEIEIPKDRIPVNHDRMIHLKGVSCNNLQN
                     VDVSIPLGLLTCITGVSGSGKSSLINDTLYPIAANALNRASLMTIGEVKDISGLHLCD
                     KVIDIDQSPIGRTPRSNPATYTGLFTHIRDLFSGTPESRARGYQPGRFSFNVKGGRCE
                     ACQGDGLIKVEMHFLPDIYVSCDVCQGKRYNRETLEIHYKGKNIHEVLDMTVEDACAF
                     FAAIPVIARKCLTLMDVGLSYIKLGQSATTLSGGEAQRIKLARELSKRDTGNTLYILD
                     EPTTGLHFHDTKQLLTVLTRLREQGNTIVIIEHNLDVIKTADWIVDLGPEGGSKGGKI
                     IATGTPEMVAENPQSFTGQFLRQILSKSNELLLQKCK"
     gene            7720..8202
                     /locus_tag="JBH85_10160"
     CDS             7720..8202
                     /locus_tag="JBH85_10160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946564.1"
                     /translation="MMRNRDFNMKSLIKNLLFIVVFSINSSALYAINGNTRVIQWAQQ
                     TLMDTLSVSYTSKPQDFVAVRKNYSLNAWSGITGFLGGNMQSIREKQLTLHPVLLPDT
                     QILSTGLYSGMSYWIIRQSVAIDELNTKLTFTLTILGRSGAAGSPYIVQSLSILLNAL
                     "
     gene            complement(8299..8478)
                     /locus_tag="JBH85_10165"
                     /pseudo
     CDS             complement(8299..8478)
                     /locus_tag="JBH85_10165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096200.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8446..9012
                     /locus_tag="JBH85_10170"
     CDS             8446..9012
                     /locus_tag="JBH85_10170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HAU0946565.1"
                     /translation="MEDTTMPKCMHFILATALIFVTSTFYASNLREIEQEVSDSVITA
                     KITAKFAESRHLNPLKISIDTEKGIVTLSGYAPDKQAFIDALQIAKNTKGVKAVHAKE
                     LHIKKVNTAFTDAFITAEVETAVLKAKILDDESIPLVGINASTTNGEVTLSGHVKSAR
                     SIAAIIKRVNEIPGVKKIVTNLEIQENT"
     gene            9009..>9448
                     /locus_tag="JBH85_10175"
     CDS             9009..>9448
                     /locus_tag="JBH85_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4442 domain-containing protein"
                     /protein_id="HAU0946566.1"
                     /translation="MSPLTQFKFFLWFFSHFKVALIGYLKPKLIQLTDNEIVVRLPLT
                     RRSRNHLHSMYFGALAVGADIAGGLHGFYHAKQAKCKVSLAFKSFQAQFLRRPESDVY
                     FICTEGDVVKKMIEESKKSGERINKPIHIKAYINYLTHPEEIAD"
BASE COUNT         3016 a         1983 c         1700 g         2749 t
ORIGIN      
        1 attaaatgaa acactatgat tccatggatc aggagttaat taccatgcct atcagtaatg
       61 cctttcttaa gttattcagt gaatttgttg ataattatgc gcgcaatggc accccttcat
      121 tttatcattg ggcaaaggaa caaaaccatg aagtcattaa caaatttttc catgagcttt
      181 tggaaattat taaatcaaac acagaaacat ttcatgatgt cagtatcata gagcacctta
      241 atgctacagt actattatca gcaaagacca atccctactt actcgattgt tggatttcat
      301 ttattactaa atacaatgct gaaaccaaca gttttacccc aataggggct tcgatgcaca
      361 ttaaagtcgg gccagaaggc acgccatccg aacggataat aagggagctc aaagaaagtc
      421 tggtcatgac gcaacaagcg tttattttag ctcaaaaggc caatgctacg gaagttgatt
      481 ctttaaaaag acaacttgag caaacaaagc aagaaaacga gcgcttagtc acacaaaatc
      541 agtttctaaa ggatcaagtc agggcagaga aaacatttgc agaccttaac ccacagatta
      601 acaatgcccg gcagcaactc agtgctttaa cagaattaat acaaactcta agcgaaatca
      661 caaatgccaa acccaaaata gaaactgtat cttccttatc cattccagtt gttacagaaa
      721 ataaatctga acttctaaag gaaaattcat gctctgtcgc ttctgtatcc aaggaagtta
      781 ctcctgcaat cagtcaagag ccgaaaaaaa gaccagttcc accccccccc aatgatacgg
      841 atggtcaagc attatccccc aatatacccc ctaaagaaga tgtgtctata aaagttacaa
      901 taccgtccat gcccaaacca aattcaaccc agcctgctgc aaaaaattca ggtttctttt
      961 caggcgatgg ttttttaaaa gagttaaatg caaaaattaa agaaagaaag gaacgcccaa
     1021 aagatgagcc acataccact cccgtcgaaa aaaaaaatct ctagttaagc taacttctgt
     1081 tcctcctgaa tatagggcac tcttagctaa aatggaggaa attagaaatg cagtaacagg
     1141 aaaatatcct cataccgatg attcatcgcc agagtcaact cctccttcat ccccagaatt
     1201 aacccgttgg aagtgaggga tgaattaaaa tccatagtct actgtagaat aaaaattatg
     1261 gtgtataata gcttttttac ttaagtaata aatcatgcat gccttagaaa ttaaacaact
     1321 ttcaaaaacc tactcgaatg gagttgaagc gttaaaaggc attgatttaa cagtgaatac
     1381 cggcgatttt tttgccctgt taggagcaaa tggcgctggc aaatcgacta ccattggttt
     1441 aatcacatct ttagtcaata aaacttcagg aaacatcaaa atttacggct tcgacctgga
     1501 tgcttatccc gaaaaagcca aatcttgtct gggacttgtc cctcaagaag tcaatctgaa
     1561 tatttttgaa aactgcgagc aaattttact gaatcaagct ggctattatg gcatttcaag
     1621 aaaaaaggct ttccccagag cggaagcctt gctagaacaa ctaggacttt gggacaagag
     1681 acgttctata gtacggcatt tatcaggtgg aatgaagaga agacttatga ttgccagagc
     1741 actgattcat caacccaaat tactgattct ggatgaaccc accgccggtg ttgatataga
     1801 aataagacac agcatgtggg attttctagc gagaactaat gcagaaggaa caacgattat
     1861 cctgacgact cattacctgg aagaagcaga acaattatgt aaaaacatcg caataatcga
     1921 taaaggtcaa attattaaaa atacctcaat gaaagcctta ttacaaacct tacgccatca
     1981 aacctttatc tttaacacag aaaaccctat tgattatttg ccggatatac acccgttcaa
     2041 tgtgactccg attgatccaa ctacttttga attgcgtgtt gacaataact tcagtttaaa
     2101 tgaagtattc tctgtattaa caaaacaggg aataaagatt cacagcatgc gcaataaaac
     2161 caaccgatta gaagaacttt ttatggatct gattaaaaat gggatttaaa tatcaactta
     2221 ttgcccttta taccctggta agacgtgaag tggttcgtat gtttcgcatt tcgagtcaag
     2281 tatttttgcc gccagtaatc accacaacgt tatattttct aatttttgga agtttaattg
     2341 gacctcgtat tggagatatt gagggcgtgg attattcaca attcatagca cccggattaa
     2401 ttatgatgtc cgttattatt aattcctatg gaaacgtctc taattcacta ttcagcgtaa
     2461 gatttcaaaa aagtatagag gaaatgctga ttagtcccat gcataatgga cttttattgt
     2521 taggttatgt gataggaggc gtgctgagag gattgatcgt cgcaattctg gtttttgtta
     2581 tctctacctt ttttctgcct gttgaattag atcatttacc aatgaccctt ctagttgtcg
     2641 tgcttgttgc agccatattc tcactggctg gatttaccaa tgccatggtc gctcgaaatt
     2701 ttgatgacat catgctgata cccaccttta tcctgacccc tcttacttac ttgggaggag
     2761 tcttttacag tattaatatg ctgcccccct tttggcaaaa aatctctctt ttcaatccaa
     2821 ttttatacat ggtaaacgct ttaagacaca ccatgatcga tcaggaagaa gttagtatta
     2881 ctctggctat gattattatt ttcctgatgt taattgcttt gacagtaggg aatatgattc
     2941 ttttaaaaaa aggggtggga tttcgcgaat aaaaaacagg attccctgca aaacggatct
     3001 atttgcgttt aaaacccaat gcttccaggc gctgttcaat actagggtga gttgaaaagg
     3061 cattatttag cgattttaca gggtcaatgt gagaaggatc aaaaagatag gaagcttgcc
     3121 ttacctgttc atgaggggta tctccataag cttttgcata ttgctccgca ttctgaacat
     3181 ggtcttgatt aattttaagc aaagccctgg ccataggctc attatctctc attaattcga
     3241 cacaaccggc gtcagccatg tattctctgg ttcggcttaa aaagagagct agtaaaacag
     3301 taataatagg taagacatat cttaagatga taataaccat taacaagcgg ttatctcctc
     3361 ttctgtctcg cttgtaaatt acggaataaa acaggatatc aatgacaatt aataaaatat
     3421 tactgagcac ggcaaccatg agagtcaatt taatatcatg atgtctgata tggcttaact
     3481 catgagccat tacagcctgc atttcagccc tgtccagttt ttccatcaat ccacgagtaa
     3541 tcgcgaccat cgccgatttc tcactgtaac cactggcaaa agcattcatg taattggctt
     3601 cgataatgta aactttaggc atgtattgca atcctgatgc gactttcatc tcttcaacaa
     3661 cattgtacaa ttgtttttct tgtaagctac gagccgtttc tggcgttatt tgataatact
     3721 ccgtccccaa taacataatg cggtcataaa gagcataagt aattaacaag gaaatgcctg
     3781 caaatgcgat cattaataaa gtagcaaaag gcaccacttt aaaagtgatt aaagcatgga
     3841 taatattttc taacgaggca tgaggataca tgctttgtaa aacaaacgca tcgactatca
     3901 atcccacaaa gatataaact aaaaaaaaga ctgcaatcac ccttcgggtc tttttctcat
     3961 ttcgcctcaa ttgagcacgc caatctcctg ctgtggcatg ataatctgca atccccatgg
     4021 tatattgctc aaagtttcac agtgtaattt tcttttgctt gaatttgctc ttctggaagc
     4081 ccccaataga taaattcttt atccaaagca gaagaaaaca ttgccacaac catggattca
     4141 aaaaatgatt ttttcttggc gttataacgt tctatcccat cattataagc ttgtttcgca
     4201 taagctaact tgttttctgt gttaacaatt tcctcttgta actgcatgac attttggcta
     4261 gctttcaaat caggatactg ttcaaaaacc aaattcaaat tggatgcaat ttttgaaatt
     4321 ccattttctg cagcaattcg accttgctca tctcccgcat ctttagcagc ctgggcctga
     4381 ttacgtaaag caacgacatc ctttaatgtt gttttttcgt aatccatgta ttttttaact
     4441 gcttcgatca gagattcaaa aactttaaat cgcctatcca attgaatatc tatttgtttt
     4501 ttgttgttat taattgcctc tatcaaaccg attagagtgt tatagatgct aattgcccaa
     4561 acgaatgcga gtgcgataat aattaaaatt gcgataaaaa atgttttcat cttcctatcc
     4621 tgtgaaaggt tccttcccta atttatagct cgaaatttca gaaaataaca gctaagataa
     4681 gaaaaaagaa acaactggat aacgtgtttt ttgtcacaaa aagagattca ggttgcctga
     4741 aaaacaacct ggatagcaca tcaagtataa agacaaattg ataattaatg aactatttgc
     4801 atttctgtaa tagaagctca tttgattttg ataaaatttg tcttaaaaac tgacctgtaa
     4861 aagattgagg gttttcagca accatttcgg gtgttcctgt tgcaataatc tttccccctt
     4921 tactgcctcc ttcaggacca agatcaacga tccaatcagc cgtttttatc acatccaaat
     4981 tatgttcaat aatgacaatg gtatttcctt gctctcgcaa gcgagtcaac acagttaata
     5041 actgtttcgt gtcatgaaag tgtaatcctg ttgtgggctc atcgagaata tatagtgtat
     5101 ttccggtatc cctttttgat aattctctgg ccaacttgat cctttgagct tctcctccag
     5161 agagagtagt tgcactttgt ccaagcttta tataagacaa accgacatcc attaatgtta
     5221 ggcattttct ggcaataaca ggaatggcag caaaaaaagc gcacgcatct tcgacagtca
     5281 tgtccaacac ttcatgaata tttttgcctt tgtagtgaat ttccaaagtt tccctattgt
     5341 atcttttgcc ttggcataca tcgcaagaaa cgtatatatc aggtaaaaaa tgcatttcaa
     5401 ccttgataag accatcacct tgacaagctt cgcaccggcc accttttaca ttgaaactaa
     5461 agcgcccagg ttgataccct cgtgctcttg attccggagt ccctgagaat aaatctctga
     5521 tatgagtaaa taaaccagta taagttgccg gattggaacg cggagttctg ccaattggac
     5581 tctggtcgat gtcaataacc ttgtcacaaa gatgcagtcc agaaatgtcc ttaacctcac
     5641 ctatagtcat taagctggct ctgtttagtg cattggcagc aataggatat aaagtatcat
     5701 taatcaaact ggatttacct gaaccagaaa cacctgtaat acaagtcaac aaacctaaag
     5761 gaatactgac atcaacattt tgtaaattat tgcaagacac gccttttaaa tgaatcatcc
     5821 gatcatggtt aaccggaatt cgatccttgg gaatttctat ttcctttttc ccagacaaat
     5881 attggccggt gagagatgcg ggattgttca ttacctcttc aggagaaccg ctggcaacta
     5941 cttccccacc atgcactcca gccccaggcc ctatatcaag aacaaaatca gcgcttcgga
     6001 tagcatcttc atcatgttcg acaacgatta cagtgtttcc ctggttgcgt aaatgcatta
     6061 aagtactcaa taatcggtca ttgtcacgtt ggtgcagccc tattgaaggc tcatccaaaa
     6121 tatacatcac ccctacaagc cctgaaccta tttgactagc caggcgaata cgttgagctt
     6181 ctccgccaga tagagtctcc gcgcttcgag ccaaagacaa ataatctagc ccgacattca
     6241 ccagaaaccc cagccgctca acaatttcct tattgatttt tgctgcaatt tcacccctat
     6301 accccgataa cttcagctct ttaaaaaact gataggcttg ctcaatagaa tagctggtga
     6361 tttctggtag atttttatta tcaataaata catgtcgagc ttcttcacgc aatctcgctc
     6421 cctggcaaga ttggcaaggg cgtgaggata ggtatttggc aagttcctcc cttatcatac
     6481 cagaatctga ttcacgatag cggcgttgca tgttaggaat tattccctca aaactatgcc
     6541 gcttaaccat gtatcctcca tgcggcctat gatactgaaa ctcgattatt tcacgaccac
     6601 taccatacaa aacgatttgt tgcattgctt cacttaaatc acaaaaaggc gtactggtat
     6661 caaaaccata gtgcctcgca agcgactcaa gcatgctgaa ataatacgtg gttttcctat
     6721 cccatcccct gattgcccct tctgccaaac tggcggttgc atcgtggact actcttgacg
     6781 gatcaaaaaa ctgatccact ccaagcccat cacatgagga acatgcaccg acaggattgt
     6841 taaatgaaaa aagccttggc tcaagttcac ttaaactgta accgcattca gagcatgcaa
     6901 accttgaaga aaataaaagt tcattgaaat gaccatccat tgaagaaacg atgacaagac
     6961 catctgccag attgagcgca ttttcaaaag attcactcaa acgttgagcc aaatcagggc
     7021 gtactttaaa gcgatcaata actacttcaa tagtgtgctt ggtacgcaat cctaatttag
     7081 ggggagaatc cagttcataa agctctccat caatacgtgc acgtacgtac ccttgcgctt
     7141 gcaattgttg caaaaactgg acatgctctc ccttccgttc acgaataaca ggcgccagaa
     7201 tcatcacttt actgtcttct ggtaaagcca atacctgatc aaccatttga ctaatggtct
     7261 gagcatgcaa gctggtgtgg tgggtaggac accttggctc tccgactcgg gcataaagca
     7321 agcgcaaata gtcataaatt tcggtaatgg tgcctaccgt ggatcgggga ttatgagagg
     7381 tagccttttg ttctatagaa atcgccgggg agagcccctc tatcgaatca acatcaggtt
     7441 tttccatcat ggacaaaaat tgtcgagcat aagcagacaa agattccacg taacggcgct
     7501 ggccttcggc atagagagta tcaaaggcta aagacgactt cccagaacca gacaatccgg
     7561 ttattacgat taatttatct cgaggaagct ccaggtccaa gttcttgaga ttatgggttc
     7621 ttgcgccacg aatggtgatg gtatgcataa aattcgctaa tttgacttaa aaaatacatg
     7681 agtatatctc tgctataata ataaaacaaa ttgcacacta tgatgcgaaa tagggatttt
     7741 aatatgaaat cactaataaa aaacttgctt ttcattgtgg tattttcaat caactcatct
     7801 gctctctatg ctatcaatgg taatacccga gtgattcaat gggctcaaca aacccttatg
     7861 gatactttat ctgtcagcta tacttcaaag ccacaagatt ttgtcgctgt tcgcaaaaat
     7921 tactcactta atgcctggag tggaataacc ggatttttag ggggtaatat gcaaagcata
     7981 cgcgaaaaac aactaacact tcatccggtt ttactgcccg acacccaaat tctctcaaca
     8041 ggtctttatt cgggtatgag ttattggatt atcagacaat ccgtagccat tgatgaactg
     8101 aataccaaac tgacttttac cttaaccatc ctgggacgat ctggggctgc aggctctcca
     8161 tacatagttc aaagcttaag tatattgctc aatgcattat aattacaaat taaacaggaa
     8221 tcacctgaaa tatggattgt ctccatgacc acatggaatc atcaacatga aaggtatact
     8281 ctcgctttaa attctgcttc aatataaaca ggacttacga aaaaccccaa ggtcgaggca
     8341 aaaaattttt ttaatgagag agtttagata cactaaatga cctaattaaa aacatttttt
     8401 aacaaagaga ttggggtttt tcgtaagtcc tgataaaagc aacaactgga ggacacaacc
     8461 atgcctaagt gtatgcattt tattttggct actgcattaa tttttgttac aagtacattt
     8521 tatgccagca atctacggga aatagaacaa gaagtaagtg attcagtgat tactgccaaa
     8581 attactgcaa agtttgccga aagcaggcac ttgaatccat taaaaatttc aattgacaca
     8641 gaaaagggaa tcgtgactct aagtggctat gctcctgata aacaggcttt catagatgcc
     8701 ttgcagatcg ccaaaaacac gaaaggtgtc aaggcggttc atgccaaaga gctccacata
     8761 aagaaagtca ataccgcttt cacagatgcc ttcatcacgg cagaagttga aactgctgtt
     8821 ctaaaagcca aaattctgga tgatgaatca ataccattgg ttggaatcaa tgccagcaca
     8881 acgaatggcg aggtcacctt gtctgggcat gtaaaaagtg cgcgctccat tgctgccatc
     8941 attaaacgcg taaatgagat acctggcgtc aaaaaaatcg ttaccaattt ggaaattcag
     9001 gaaaatacat gagtccatta acccaattta aattcttttt atggtttttt agccacttta
     9061 aagtagcctt gattggttat ttaaagccta agttaattca gcttaccgat aatgaaattg
     9121 ttgtgcgact gccattgaca agacgcagcc gcaatcatct gcattccatg tattttggtg
     9181 ccttggcagt tggtgcggat atagctggag gattacatgg tttttatcat gctaaacaag
     9241 cgaaatgtaa agtatccctg gcatttaaat cttttcaagc ccagtttctg cgtagacctg
     9301 aatccgatgt ttattttata tgcacagaag gggatgtagt taaaaaaatg atagaagaat
     9361 caaaaaaatc cggtgaacga attaataaac caattcatat caaagcttat atcaattatt
     9421 tgacccatcc agaagaaatt gctgattt
//
LOCUS       DACVWI010000115         9352 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.115, whole genome shotgun sequence.
ACCESSION   DACVWI010000115 DACVWI010000000
VERSION     DACVWI010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 9352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9352
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.115"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..244
                     /locus_tag="JBH85_10180"
     CDS             <1..244
                     /locus_tag="JBH85_10180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HAU0946567.1"
                     /translation="VTWIASTKSRRVQFFSLIQQVCLIGFFCFLYQSIIIFIDALLGF
                     NYNLIMPVASAILGMIIWPWIRVLGYSSLLTRSVYR"
     gene            complement(180..848)
                     /locus_tag="JBH85_10185"
     CDS             complement(180..848)
                     /locus_tag="JBH85_10185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HAU0946568.1"
                     /translation="MKWLLSITKKFIINFHNQRNHKMPQLILFNKPYGVLTQFTGELP
                     EQTLSAFIKFPGFYAAGRLDKQSEGLLVLTDDGKLQHRLTHPKFEKKKHYWVQVEGAP
                     TDKDLQPLRKGLVIKDITFLPAEAKLISEPKIWPRIPPIRERKHIPTTWLEIILREGK
                     NHQIRKMTAAIGFPTLRLIRHQIGDWRLDQLQPGEYKLINLTNDKLNELTRKSNPRLG
                     SRAK"
     gene            1043..1741
                     /locus_tag="JBH85_10190"
     CDS             1043..1741
                     /locus_tag="JBH85_10190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase"
                     /protein_id="HAU0946569.1"
                     /translation="MKWVLVVMAIIAQTSCAVNHRVMVGDEPVIIQQTKGQGKTFVHV
                     HHNEQTALKAAKAVIRKEGGSLITLIHSGGRNIVFHLHNQRYEFDPNRIFTDKGIKKT
                     LTQYSYYTPEAHQEVKKLADKIKALLPEGKVIAVHNNSSYSLKDYLPGHELAKDAKAL
                     YMNPDNYFRNFYLVTKLSDYLRLKMQGFNGVLQKPSATDDGSLSVYLAKRDYINVEAG
                     YDQLAEQIKMLLHA"
     gene            1854..3110
                     /locus_tag="JBH85_10195"
     CDS             1854..3110
                     /locus_tag="JBH85_10195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019349603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HAU0946570.1"
                     /translation="MTYDKIKVPAQGEAITVAADHSLHVPDNPIIPFIEGDGIGVDVT
                     PPMIRVVDAAVQKAYGNKRKISWMEVYAGEKATKVYGSDQWLPKETLDAMKKYVVSIK
                     GPLTTPVGGGIRSLNVAIRQDMDLYVCLRPIRYFNGVPSPVREPWKTDMVIFRENSED
                     IYAGIEWQADTPEAKKVIQFLTKEMGVKKIRFPEHCGIGVKPVSREGTTRLVKAAIQY
                     AIDNDRSTVTLVHKGNIMKFTEGAFKDWGYQVARDSFGAKEYQGGPWMEFKNPKTGKQ
                     IIINDVIADAFLQQILLRPEDYSVIATLNLNGDYISDALAAQVGGIGIAPGANISDQM
                     AVFEATHGTAPKYAGQNKVNPGSIILSAEMMLRHMGWYEAADLIIRGMEGAIEAKTVT
                     YDFERGMQGATLVSSSGFADAMIKHM"
     gene            3512..3847
                     /gene="clpS"
                     /locus_tag="JBH85_10200"
     CDS             3512..3847
                     /gene="clpS"
                     /locus_tag="JBH85_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HAU0946571.1"
                     /translation="MSRQNLEEIIQTGIADTELSTEISTAIKRPRKYKVLLLNDDYTP
                     MDFVVEVLKHFFHLNEEVAIQVMLQVHFQGKGVCGVFTRDIAETKVALVNEYARMNQH
                     PLLSSMEPE"
     gene            3873..6146
                     /gene="clpA"
                     /locus_tag="JBH85_10205"
     CDS             3873..6146
                     /gene="clpA"
                     /locus_tag="JBH85_10205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HAU0946572.1"
                     /translation="MTMLNKELEFTLNLAFKEAKEKRHEFMTVEHLLLSLLDNPAAGN
                     VLQACDANIEALRRDLIEFIDETTPRIPEDELDRETQPTLGFQRVLQRAVFHVQSAGK
                     TEVTGANVLAAIFSEQESQAVYFLRRENITRLDVINYISHGVSKYQNNDMHENMNSSM
                     EEDMMTPEGNESPLDSYCTNLNRRAKQGKIDPLIGRHEEIQRTIQVLCRRRKNNPLLV
                     GEAGVGKTAIAEGLARRIVDGEIPDSIRGCVVYSLDLGALLAGTKYRGDFEKRLKAVL
                     KQLGQQEGAILFIDEIHTIIGAGAASGGVMDASNLVKPLLANGELKCIGSTTYQEYRG
                     IFEKDRALARRFQKIDISEPTIDETFEILKGLKGKLEAHHGVKFSIASLKAAAELSAK
                     YINDRFLPDKAIDVVDEAGAYQNLLTANKRKKIISVTEIESVVAKIARIPIKKVSARD
                     KDTLRNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGCFLFAGPTGVGKTE
                     VTRQLANVLGIELLRFDMSEYMEKHTVSRLIGAPPGYVGYDQGGLLTEAVTKNPHAVL
                     LLDEIEKAHPDVFNLLLQIMDHGTLTDTNGRQADFRHIILVMTSNAGASEIVRNSIGF
                     STQDNTNDGLEVIKKQFSPEFRNRLDAIINFAPLDTQTIGLVVDKFIMELDEQLSHKG
                     VTFTVDKSAREWLMEHGYDKAMGARPMARLIQENIKKPLADELLFGKLMHGGHVTLRV
                     KDGKLHFDSHDHREGVC"
     gene            6370..7149
                     /locus_tag="JBH85_10210"
     CDS             6370..7149
                     /locus_tag="JBH85_10210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAU0946573.1"
                     /translation="MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAR
                     EYTDKVFSTDWQGYGIQKDRALQKAQGDWVLNLDADESVSSELRQEMLQAISSDTADA
                     FRIPIQMIFYNQVLKYSGSPKRHIRLFKRENACYSKDIVHEKVLIPVNARVGKLKKPI
                     WHHSFSDVHHVLYKLNKYSSYSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLD
                     GRAGFLFAVFGAQGAFYRGVKQIYKDRDINKLPSVNHIKEE"
     gene            7152..8402
                     /locus_tag="JBH85_10215"
     CDS             7152..8402
                     /locus_tag="JBH85_10215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HAU0946574.1"
                     /translation="MRLTIMDTKGILLAPFFFISFMFFIPISPTIKSICFICSLIAVL
                     ITPQYRKHIVYAYNTLWGRAAFCLFLFVVIASLWSPAPYSMQWMVIGKYCKLIYLPIL
                     ATGFINPKVRNWSINSYLAAIFITCVISILKAKNIIASEDPGEVFYNHIITGFMVALA
                     AYLTGLLAFQNSGWLRLIYIFMMFLTSYQVLFINTGRTGYLVYFILMLLLLIQKLNFK
                     QALAGIVLFSGIIALAYHHSPVMQTRVYDLIQDIKLLKQHNKNTSIGYRMQFHHYAKQ
                     LMLKHPFIGIGTGGFKYSYSQDVPVPSWGKELTDPHSQYWMTLAEQGLIGLVLLVIFL
                     ASLFITSFQLTSSRPILLGVLFSFCIGSISDTILCYSTAGYLLVVMSALCFGELIEKR
                     RVKGVEEDHLVPLSAHALAAISQT"
     gene            complement(8403..8777)
                     /locus_tag="JBH85_10220"
     CDS             complement(8403..8777)
                     /locus_tag="JBH85_10220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neurogenic locus notch"
                     /protein_id="HAU0946575.1"
                     /translation="MLFLKIKTNQRTTMNILKPKAFLLASVFALSASPAFAADGCCSK
                     MGGINYCDSSAGRLVCNNGFYSTCYCTRHAVMDLQFLMGCCLWHGGVYPQLNSSGLVV
                     CNDGYVSEECSLQKPVEQISVY"
     gene            complement(8908..>9352)
                     /locus_tag="JBH85_10225"
     CDS             complement(8908..>9352)
                     /locus_tag="JBH85_10225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HAU0946576.1"
                     /translation="RHILGLPGILLAPLLHANFNHLFFNSIPLLVLSNFILINGVNYY
                     LIVTVMITLFSGTLIWCFAKRGIHIGASGLITGYWGFLVYNIYQTGTLTTIILGLLSL
                     YYFAGIFLGIFPGEKGVSWQGHLFGLLAGFLTSYLLEVYPQILIY"
BASE COUNT         2924 a         1563 c         1961 g         2904 t
ORIGIN      
        1 ggtaacctgg atagcgtcaa ccaaatcgag acgagttcaa tttttctcac taattcagca
       61 ggtttgtttg attggatttt tttgttttct atatcaatca attattatat ttattgatgc
      121 tctgttaggt tttaattata acctgataat gcctgtagca agtgccattt tgggtatgat
      181 tatttggccc tggatccgag tcttgggtta ctcttccttg ttaactcgtt cagtttatcg
      241 ttagtaaggt tgattaactt atattccccg ggctggagtt gatctaaccg ccaatcacca
      301 atctggtgtc taattaaacg taaagtagga aatccaatag ccgcggtcat ttttcttatt
      361 tgatgatttt tcccttctct taaaataatt tccagccagg tagttggtat gtgtttccgt
      421 tctcttatag gcggaattcg tggccatatt tttggctctg aaatcaactt ggcttcggcg
      481 ggtaaaaaag taatgtcttt gattaccagg ccttttctta aaggttgtaa atctttgtct
      541 gtaggggccc cctctacttg aacccagtaa tgtttctttt tttcaaattt aggatgggtt
      601 agccggtgtt gtagttttcc atcgtcagtt aagacaagca agccttcgct ttgtttatcc
      661 agacgtccag ctgcataaaa acccggaaat ttaataaatg ccgagagagt ttgttcgggt
      721 aattcgccag taaattgagt caggactcca taaggtttat taaaaagtat taattgtggc
      781 attttatgat tgcgttgatt atggaaatta atgataaatt ttttggttat tgacagcaac
      841 cacttcaggg ctagatcacg cctttaagca caataacagc gtaaataatt gttcatattt
      901 tgtcattcac tcaatgagat atgaggtgca gtaattaatc aaaatatgat tttgtccctc
      961 ttggaattaa agccaagatt gattttttat ggccaatcac tatacaatta cacaatttta
     1021 ttcgttatgg tgactcttat tcatgaaatg ggtattggtt gttatggcaa ttatcgctca
     1081 aacaagttgt gcagtgaatc acagagttat ggttggggat gaacctgtaa taattcaaca
     1141 aaccaaaggt caaggtaaga cttttgtaca tgttcatcac aatgaacaaa ccgcactaaa
     1201 agctgctaaa gctgtcatta gaaaagaggg tggaagtctc attacactta tccattccgg
     1261 cggtcgaaat atagtattcc atttacataa ccaacgctat gaatttgatc ccaaccgcat
     1321 ttttaccgac aaagggataa aaaaaacttt gacgcaatac agttattata ctcctgaagc
     1381 gcatcaagaa gtgaagaaac ttgcagataa aattaaggcc ttactaccag agggtaaagt
     1441 aatcgctgtt cataataact cctcctattc tttaaaagat tatttgcctg gacatgaact
     1501 tgccaaggat gcaaaagctt tgtatatgaa tcctgacaat tattttagga atttttatct
     1561 ggttactaaa ttaagcgatt atctgcgttt aaaaatgcaa ggttttaatg gtgttttaca
     1621 aaaaccttcg gctacagacg atggatcttt atcagtctat ctcgctaaac gtgattatat
     1681 taatgtcgag gccggttacg atcagttggc agaacaaatt aagatgttgc ttcatgctta
     1741 gtttcaatct gagctaattt agcaaaaaaa aataattaat agtcgtaatt gatatttggg
     1801 aaacctgatt atcacatgct atcattaatt tctctaaatt tatggagtcg tcaatgacat
     1861 acgataaaat caaagtgcct gcccaaggcg aagctattac tgttgctgct gaccattcac
     1921 ttcatgttcc tgataatcca attattcctt ttattgaggg tgatggtatc ggtgttgatg
     1981 taacacctcc gatgatccgt gttgttgatg ctgcagttca aaaagcatat ggcaacaaga
     2041 gaaaaatttc ctggatggag gtttatgccg gggaaaaggc tactaaggtt tatggtagcg
     2101 atcaatggct tcccaaagag actctggatg ccatgaaaaa atatgtggtt tcaattaaag
     2161 gtcctttaac tactcctgtt ggtggcggta tacgttcatt gaatgtcgct attcgccaag
     2221 acatggatct ctatgtttgt ttacgtccaa ttcgctattt taatggtgtt ccaagcccag
     2281 tgcgggagcc atggaaaacc gatatggtca ttttcaggga aaattccgaa gatatttatg
     2341 ccggtattga atggcaggca gataccccgg aagctaaaaa agtgattcaa tttttaacta
     2401 aggaaatggg tgttaagaag attcgttttc ctgagcattg tggtatcggt gtaaagcctg
     2461 tttccagaga aggtactact cgacttgtca aagcggccat tcagtatgcg atagataatg
     2521 accgcagtac agtgactctg gtacataaag gcaatatcat gaagtttact gaaggggctt
     2581 ttaaagattg gggatatcag gttgctcgcg attcttttgg agcaaaagaa tatcaaggtg
     2641 ggccatggat ggaatttaaa aatcctaaaa ccggtaagca gattatcatt aatgatgtga
     2701 tcgctgatgc ctttttgcaa caaatcctgt taagacctga agactatagt gtcattgcta
     2761 cgttaaattt gaatggtgat tatatttctg atgctttggc tgctcaggtt gggggaatcg
     2821 gtatagctcc cggagcgaac attagtgatc aaatggctgt gtttgaagca actcatggaa
     2881 cagcccctaa atacgctggg cagaataaag tgaaccccgg ttctattatt ctttctgccg
     2941 aaatgatgtt acgtcatatg gggtggtatg aagcggctga tttgattatc agaggtatgg
     3001 aaggcgcgat agaagccaaa accgtaactt atgattttga acgtggtatg caaggagcaa
     3061 cgttagtcag cagctctggt tttgcagatg ctatgattaa gcatatgtaa accggggagt
     3121 tatcacatgg tctttctgaa caacgcgtat tgacaatata gtgcttacag cgttactcag
     3181 tgccaatgcg ttgttcatga aagactggga ttatcctttc aagattattg gtagtatctt
     3241 tgactatcag gtttatacat cttacgagtt catgaaaatt gagcaggaac tttatccatg
     3301 ctaattatga tgctactcta ctgattagag acggctcaat ctcttgagta aaacctggtg
     3361 gtcaataaca aatagtacaa catttgagtg aatcatatct aatcactatg ctattgatta
     3421 tttcaatgac taaatttttc attaaaatta gctaaattta ctggccaaat gcgtgtaggg
     3481 agtctataaa aatagtaaga ggttgttagt tatgagcagg caaaatttag aggaaataat
     3541 acaaacaggg atagctgata cagagcttag cacagaaatt agcacggcta ttaaacggcc
     3601 aagaaagtat aaggttttat tgctcaatga tgactatacg ccaatggatt ttgtggtaga
     3661 ggtactgaag cacttttttc atttaaatga ggaggttgcg attcaggtga tgttacaggt
     3721 tcattttcaa gggaaggggg tttgtggagt gtttacacga gacatagcag aaacaaaagt
     3781 cgccctggta aatgaatacg ccagaatgaa tcaacatcca ttattatcta gtatggaacc
     3841 ggagtaaact ggtggtgggt tggtaaggag caatgacaat gttaaataaa gaactagaat
     3901 tcaccttgaa tctagctttc aaggaagcaa aagaaaagcg tcatgagttc atgactgttg
     3961 aacatttgct gttgtctttg cttgataatc cagcagcagg aaatgtatta caggcttgtg
     4021 atgctaacat cgaggcatta cgtcgtgatt taatcgaatt tattgatgaa acaaccccaa
     4081 gaattcctga ggatgaactg gacagggaaa ctcaaccaac attaggtttt caaagggttt
     4141 tacagcgtgc agtatttcat gtgcagtcag caggtaaaac agaagtcact ggagctaatg
     4201 tattagccgc aatttttagt gagcaagaaa gtcaggctgt atattttttg cgacgtgaaa
     4261 atattactcg ccttgatgtc attaattata tttctcatgg agtgtcaaaa tatcaaaaca
     4321 acgatatgca tgaaaacatg aattcgtcta tggaagaaga catgatgacc cctgagggta
     4381 atgaatctcc acttgatagt tattgcacca atctcaacag acgcgcaaaa cagggcaaga
     4441 tagatccgtt gatagggcgg catgaagaga tacaaagaac tatacaagtg ctttgcagac
     4501 gtcgtaaaaa taatccttta ttagttggcg aggcaggtgt aggtaaaacg gctatcgcag
     4561 aaggtttggc cagacgcatt gtggatggtg aaatcccaga ttccataaga ggctgcgtag
     4621 tctactctct tgatttgggc gccttattgg caggaacgaa atacagaggg gattttgaaa
     4681 aacgattgaa agctgtgctg aaacagttgg ggcagcaaga aggagccatt ttattcatag
     4741 atgaaattca caccattatt ggcgcaggcg ctgcatctgg aggagtcatg gatgcttcca
     4801 acctggttaa gccattattg gcaaatggtg aattgaaatg tattggctca accacttatc
     4861 aggaatatcg tggaatattt gaaaaagaca gggccttggc aagacgattc caaaaaattg
     4921 atatttcaga accaacaatc gatgaaactt ttgaaatatt aaaaggatta aaaggcaaat
     4981 tggaagctca ccatggagta aaattttcaa ttgcttcatt aaaagcagcg gcagaattat
     5041 ctgcaaaata catcaatgat cggtttttgc ctgacaaagc gattgatgtg gtggatgaag
     5101 caggcgctta tcagaattta ctgacagcaa ataaacgtaa aaaaattatt agcgtgactg
     5161 aaatagagag tgttgtcgca aaaatcgcta gaatcccaat taaaaaagta tctgcacgcg
     5221 ataaagatac tctgcgtaac ctggagcgtg atttaaaatt attagtctat gggcaagacc
     5281 aggcaattac tgccttggct tcagcaatca aactgggtag atccggactt agagaacctc
     5341 agaagccagt aggttgtttc ttgtttgccg gaccaactgg tgtaggaaag acagaggtaa
     5401 caaggcaact ggccaatgtg ttaggcatag agttgctgcg ttttgatatg tcagagtaca
     5461 tggaaaaaca cactgtttca cgtttgattg gagcacctcc tggctatgta ggatacgatc
     5521 aaggtggttt attgactgaa gccgtgacta agaatccaca tgctgttctg ctacttgatg
     5581 aaatagaaaa agcacatcct gatgttttta atttattgtt gcagataatg gatcatggca
     5641 ctttaactga tactaacggt cgtcaagctg atttcagaca tatcatactt gtaatgacca
     5701 gtaacgcagg agccagtgaa attgttcgta actccatagg tttttcaacg caagacaata
     5761 ccaatgatgg gttggaagta attaaaaagc aattcagtcc tgagtttagg aaccgtttgg
     5821 atgctattat caattttgct ccgttagata cacagactat aggactagtc gttgataaat
     5881 tcattatgga gttggatgaa caattaagtc ataaaggcgt tacttttaca gttgataagt
     5941 cagccaggga atggctgatg gagcatggtt atgataaagc catgggagca agacctatgg
     6001 ccagattgat tcaggaaaac atcaaaaagc ctcttgctga tgaactgttg tttggtaaat
     6061 taatgcatgg cggtcatgtc actttgcgag tgaaagacgg taaactgcat tttgacagtc
     6121 atgatcatag agaaggtgtt tgttaaacgg gaaccatctt cagttctgtg catgacaaat
     6181 tttttgttat gcacagacaa aatcacaata atcctgagat agtaattgtc attaacctgt
     6241 tagttgcata actggtaatt gttatcacga tttctttttg tgaccgctaa acgaatatta
     6301 ttccttttta ccttgttaca atccggctta attatcgata taatatttat tttgaattga
     6361 tataaagcca tgttatccgt aatcattatc acaaaaaatg aagaagccaa cataaggcgg
     6421 tgcttggaat ccgttcattt tgcagatgaa ataattgtat tggactctgg cagcacagat
     6481 aatacattag ctatagccag ggagtatacg gataaagtat tttcaacaga ttggcaaggc
     6541 tatggtatcc aaaaggatag ggccttacag aaggctcaag gggattgggt tttaaatctt
     6601 gatgctgatg aatcagtaag ctcggaatta cgacaggaaa tgctacaggc catttcatcg
     6661 gatacagcag atgcatttcg tattcctata caaatgattt tttataatca agttttaaaa
     6721 tattcaggaa gtcctaaaag gcatatacga ttatttaaaa gagagaatgc ttgttatagc
     6781 aaagatatcg ttcatgaaaa agtattgatt cctgttaatg cgagagtggg gaaactaaaa
     6841 aaacctattt ggcatcattc ttttagcgat gtacatcatg tgctatacaa acttaacaaa
     6901 tattcttctt atagtgcgaa aatccgtata gaatccaatg aaaaagttgg attagtaaaa
     6961 acttttttta gtgccctatg gatgtttgtc agatgccttt ttttacagaa gggattttta
     7021 gacggcaggg caggtttttt gtttgcagta tttggtgcgc aaggcgcttt ttatcgcggg
     7081 gtcaaacaaa tatataaaga cagggatatc aataaattac ccagtgtaaa tcatataaaa
     7141 gaggaataat tgtgcgatta accataatgg ataccaaggg tattttatta gctccttttt
     7201 tctttatctc atttatgttt tttattccga tcagtcctac gataaagtct atttgtttca
     7261 tttgcagttt aattgctgta ttgattactc cacaatacag aaaacatatt gtttatgctt
     7321 ataatacttt gtggggacgc gctgcatttt gtttgtttct ctttgtcgtt attgcaagtt
     7381 tatggagtcc cgctccttat tcaatgcaat ggatggtcat tggtaaatat tgtaaattaa
     7441 tttatcttcc cattttagct actggtttta ttaatcccaa agtaagaaac tggagtatca
     7501 atagctattt ggctgctatt tttattactt gtgttatttc catcttaaag gctaaaaata
     7561 ttattgcgtc agaagatccg ggcgaggttt tctacaatca tattattact ggttttatgg
     7621 tggcattggc agcctattta acaggattgc tggcttttca aaattcgggc tggttacgac
     7681 ttatttatat cttcatgatg tttctaacca gttaccaagt gctttttata aatactggaa
     7741 gaacgggtta tttggtctac tttattttga tgttattgct tttgatacaa aaattaaact
     7801 tcaaacaggc tttagcagga attgttctct tcagtggcat cattgctttg gcatatcatc
     7861 atagccctgt aatgcaaacc agagtttatg atttaattca ggatatcaag ttattaaaac
     7921 aacataataa aaatacatcg ataggctata gaatgcagtt tcatcactat gccaagcaat
     7981 taatgttgaa gcatcctttt attggaatag gcacaggtgg atttaaatac agttattcac
     8041 aagacgtacc tgttccaagt tggggtaaag agttgacaga tccacacagt cagtattgga
     8101 tgactttggc tgagcaaggt ttaattggtc tggtactttt ggtaatattt ttagcgagtt
     8161 tgtttataac atcatttcaa ttgactagct ccagacctat tcttttaggt gttttatttt
     8221 ctttttgtat aggctccatt tccgacacga ttttatgcta ttcgactgca ggttatttgt
     8281 tggtagtgat gagtgcctta tgttttggtg agttaattga gaagcgtaga gtcaagggcg
     8341 tagaagaaga ccatcttgtt cctttatcag cccatgccct agcagcaata agtcagacct
     8401 aatcaataaa cagaaatttg ctcaacaggt ttttgcaatg aacattcttc cgaaacatac
     8461 ccgtcattgc aaaccacaag acccgatgaa tttaattgtg gatagacccc gccatgccat
     8521 aagcaacatc ccataagaaa ttgtaaatcc attacggcat gacgtgtgca gtagcaagtt
     8581 gaatagaaac cgttgttaca aacaagacga ccagcagaag aatcgcaata atttattccc
     8641 cccattttac tgcaacaacc atcagcagcg aaagcaggag atgctgacaa agcaaacaca
     8701 ctggctagta aaaatgcttt tggtttcaat atgttcattg tggttctctg attggttttt
     8761 atttttaaga atagcataga gttagatgga ttattagtga aatatgatga tttaattgca
     8821 gtttaagact gaatttatta tgacaaaaaa gttcaaagtg aaatgataaa ctggtttcat
     8881 gggccagcta ttgtgaagag ttaatgatta ataaatgaga atctgaggat agacttctaa
     8941 taaatagctg gtgagaaaac ctgctaatag cccaaacaag tggccttgcc aggatacgcc
     9001 tttttcacct ggaaaaattc ccagaaaaat accagcaaaa taatataggc taagcagacc
     9061 aagaataata gtggtcaagg tacctgtttg ataaatgtta tacaccagga atccccagta
     9121 gcctgtgatt aaaccactgg caccaatgtg tatacctcgt ttagcaaaac accaaatcag
     9181 tgttccgcta aaaagagtta tcatcactgt gacaatcaaa taatagttaa ctccattaat
     9241 cagaataaaa ttacttaaaa ccagtaaagg gatagagtta aaaaacaggt gattaaaatt
     9301 agcgtgaagt aaaggtgcta atagtatccc cgggaggccc aaaatatgcc tt
//
LOCUS       DACVWI010000116         9258 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.116, whole genome shotgun sequence.
ACCESSION   DACVWI010000116 DACVWI010000000
VERSION     DACVWI010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 9258)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9258)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9258
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.116"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..811
                     /locus_tag="JBH85_10230"
     CDS             <1..811
                     /locus_tag="JBH85_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAU0946577.1"
                     /translation="VINYEEGAELTPLNGDTKAEFYGSDFPFVPKGNAERNYSIESIY
                     EYGSRVGIWRLIRLFDKHSIPLTFFVTGYALILNPEFSVYLASHNHEVAGHGWRWIDY
                     SKESKATEKKHISRCIDTLQELTGQRPLGWYTGRRSPFTRDLLTQIGGFVYDSDSYAD
                     ELPYFINKHLVIPYSLDCNDFRFTISPGFVTAQDFYQRLKNTFDYIYQENRLSIMTIG
                     LHPRLSGKPDRCHALNEFLSYIRQFQNIWIAKRIDIALYWLTKHTQIKQDL"
     gene            928..2241
                     /locus_tag="JBH85_10235"
     CDS             928..2241
                     /locus_tag="JBH85_10235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946578.1"
                     /translation="MILLISVLFHQKSLKFISQNLYNSPHYNLQIANMSHLLDLSILK
                     KNRDFTLLYLGQFISFIGTMITSVALPYQIYHLTESTMMVGLLSLAQLLPLLITALLG
                     GVFADRYSRRGLLIISELLLAVGCLFLAFNSKLVNPSVSLIFIIASLMSAITGLHRPA
                     FDSVIQQIVKPEDYKKVGALGSFKFSFCMIIGPAAAGLIIAQYGIVITYLIDLLTFII
                     SLLNLSLMHTIPKPLAKEHPSIIVSLKEGIGFALRRQELMGSYFVDFFAMVFAMPNAL
                     LPAIAQQFGGAKTLGLLYAAPAIGSLIISFVSGWTAKITHDGKAIAIAAALWGVAIIG
                     FGLTTSLWLSLLFLALAGAFDAISGIFRSSLWNHTIPQELRGRLSGIEMISYLSGPRL
                     GDTRAGFVAAGLGIPAALISGGILCIIGVTVCCYALPKFWNYHSK"
     gene            complement(2254..3570)
                     /locus_tag="JBH85_10240"
     CDS             complement(2254..3570)
                     /locus_tag="JBH85_10240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1639 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946579.1"
                     /translation="MAGIYLKYYVPVNQIGENMMINPIEYHPKGDKVNSDYFNEYKTK
                     IYERRLSSGLEDLFGDMCGVVVQVQTGDAIPYIKELYSMTPYRYSRSYISDTHKIYCL
                     LNTKNSPAFLVLEPLDPNFKDDITRLNKMYPNSRAKFNARYVGEIYKCKNKDETRNIL
                     VSHDFNFHNPDMTENKFYCNKHIHFTRLSDFTYNCAGYTDDNIYDFDSLELGQRFYLT
                     KEQEAMLDAKDQESHDNGIKDLIKGIDHMATRILAGEREDAILEFLCLSKYYFWGAYN
                     IYDMNSSTNVNRNPHGHDIKSPAKVFTANNTPFMVNSFENLPMPTETFVRNYGRRMHH
                     IAYEVKDGDHSSGKKNIDFVVETLRDKLNIEFLAKVFGACEDSPDLKQIFSKHSIYSI
                     LITEYVERCHHFDGFFTKENVAALTEAASLDETTKQQHKKASIIGD"
     gene            3661..4218
                     /locus_tag="JBH85_10245"
     CDS             3661..4218
                     /locus_tag="JBH85_10245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM165/GDT1 family protein"
                     /protein_id="HAU0946580.1"
                     /translation="MEALIVSLGVITLAEIGDKTQLLAFLLAAQFKKPLPIILGILTA
                     TLINHSLAGLIGIWITTLLKPNVLRWILGISFILMAIWTLIPDEIEQDEKKISKYLGV
                     FGATFITFFLSETGDKTQIATIALAAHYSSPILVIAGSTLGMLLADLPAVYFGNLFSH
                     KIPMKIIHAVAACAFLIIGLITILF"
     gene            complement(4236..6215)
                     /locus_tag="JBH85_10250"
     CDS             complement(4236..6215)
                     /locus_tag="JBH85_10250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HAU0946581.1"
                     /translation="MIVMKGVCLGLIICLVVFHDGWAGKRLPELDDLYRIQDISEPDL
                     SPDGKWVAYTVSQLNAKDNISTTEVWKVSVDSKSSQRITFAEDSSSSLPKWSPNGKWL
                     AYLSDGGKEGTTQIWIASVQDNKEHQLTHIDGEVSDFTWSPDSNRIAFIAQKSVPSNE
                     EEQPIVVDRYQFKVDGVGYLGKGRDHLYLVELKSKAITQLTDGNHDEYLPAWSPDGKY
                     IAFVTKRGKDPDRHFNYDIYLIEPKSGAKERQLTHFSGSDMNPDYDSNLSWSPDSSKI
                     AYLRSNEHQWTYYSPNQLAIIDINTKDEKIIAPRDNWYYKPKWSQDGKFIYALIEESR
                     NTYLNRIDTHSGQIKKLTGGLRYDMDYSLAKGKIILLTTDDTHPSELFILNSGLIPLT
                     QHNKKLLDEVKFQPAEDIQCNSFDGTRVDGLLMKPAEYQSGILFPGFVYLHGGPVYQF
                     SHEFNFDMQWLVANNYVVIAPNPRGSSGRGFHYAKAIFADWGNLDVKDVLASVDYVIG
                     KGMVDPNRLGIGGWSYGGMLTNYVIATDSRFKAAISGAGAANILAGYGVDQYTPEYEL
                     ELGKPWTNPKLYLKLSYPFLKANNIKTPTLFLCSGLDVNVPCVGSEQLYQSLKSLDVP
                     TQLVIYPNEYHTLEKPSFVIDRLKRYTNWLDAYVK"
     gene            complement(6416..7669)
                     /gene="sidB"
                     /locus_tag="JBH85_10255"
     CDS             complement(6416..7669)
                     /gene="sidB"
                     /locus_tag="JBH85_10255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SidB"
                     /protein_id="HAU0946582.1"
                     /translation="MAKIYNAPKPKYSGWEWFKFIAIRTVFPPVLLWDLIKIGANKLL
                     GEWVSGLVLPAQNENFDDLAISDDTVSNYNEDDLICEKHDVITHDGAHLDTFEVRHRS
                     QESIDPKYQKYIINLVGNGMCYEHIIDDIKEDSKALKANVIGFNLRGVGQSTGKAKSS
                     EDLVADGIAQVQRLLDQGVSPQNITLKGHSLGAGVASLVAQHFHQLGQPINLFNSRSF
                     STITNFLVGHMRLERDEIGRAIGHKDSTVGTILGWLAKPFIKFGVALAKWEINAGSAF
                     KSVPEAYKDYIVVRSRKEIRGERIDDAVIPHYASIHKELASERHKKKAEIDEEIANLD
                     DIIRKADPLAKPGLANARDALVQAREKIKSDRKMETDVQYANGHNSDWNALHNRSGKS
                     AQTFFREFVQRTEADHAVKSIPEIN"
     gene            complement(7925..9193)
                     /gene="thrC"
                     /locus_tag="JBH85_10260"
     CDS             complement(7925..9193)
                     /gene="thrC"
                     /locus_tag="JBH85_10260"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095670.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HAU0946583.1"
                     /translation="MKIRIKSTRGQCVSTIDEAILSGLAGDGGLFVPDRFPNLTIKKF
                     YEYGNLIDFSVNLLSPFFSDSKIDVNNAFFQKFLTFSFPLHHLFKKSYVLELFHGPTL
                     SFKDLGTQFFSECLLHLIENKSAKVLVATSGDTGAAIAHALDGKRDLEGIILFPKDKL
                     TFRQQSQITCWGENIRALAVNGSFDQCQQLVKLVFAKREHKGILTTANSMNIARLLPQ
                     IIFYAFTSIQLALRHNHSVNFIVPGGNLGNVTACYWAKMLGFPVEQILIANNINSALG
                     EFLLTGAYQAKSVTKTLATAMDVGEPSNLDRLFVLFNNYSECKKQMNAESVSDEQIKQ
                     AILHCYNKYHYIICPHTATAYHRLSTINQDKPWVIVAPGHPAKFEEVLEPLLKKEIPV
                     PEQLKVLLGRKQHYSIIEPNYHALYHFLVE"
BASE COUNT         2758 a         1843 c         1592 g         3065 t
ORIGIN      
        1 tgttattaat tatgaagaag gagcagagtt aactccactt aacggtgata caaaggctga
       61 attttacgga agtgattttc ctttcgttcc taaaggaaat gcagaaagga attatagtat
      121 cgaatctatt tatgaatacg gaagtcgagt tgggatttgg cgtttaatcc gtctttttga
      181 caagcattcc atccccttga cttttttcgt aacaggttat gctttaatat taaatcctga
      241 attctcagtc tatcttgcaa gtcataacca tgaagttgct ggacatggat ggcgatggat
      301 agattattca aaagaaagta aggcaacgga aaaaaaacac atctctcgct gtattgatac
      361 cttgcaggaa ctcactggac aaaggccatt gggctggtac actggaagaa gaagcccatt
      421 tacccgcgat ctgctaactc aaattggtgg gtttgtttat gattcagata gttacgccga
      481 tgaactcccc tatttcatta acaagcatct tgtaatccca tactcattag actgtaatga
      541 ttttcgtttc acaatttctc ccggctttgt cacggcacag gatttctatc aacgtcttaa
      601 aaatactttt gattacattt atcaagaaaa tcgattatct atcatgacta ttggtttaca
      661 tccgcgatta agcggcaaac ccgatcgttg ccatgccctt aatgaatttc taagctatat
      721 tcgacaattt caaaatatat ggatagcaaa gagaatagat attgcactgt actggttaac
      781 caaacacacc cagattaagc aggatttatg aaatacccaa tctcattgtt aggaaatgtt
      841 tttaattcag tcgtttagtt tatctaagat tcttcgttaa aacatttttt gccttgatcg
      901 tgaggttttt cgtaatgctc ttatagtctg atcttattaa tttctgtact gtttcatcaa
      961 aagagcttaa aattcatatc tcaaaatctt tataattcac cccactataa tttacagatt
     1021 gccaatatga gtcatttact agatttatcc atccttaaaa aaaatcgcga ctttaccttg
     1081 ctttatttgg gccaattcat ttcattcata ggcacaatga ttaccagtgt cgcccttccc
     1141 tatcaaattt atcatttgac cgaatcgacc atgatggtag gattactcag cttggcacaa
     1201 ttactgcctc tactgattac tgcattgctt ggtggagtgt ttgctgatcg atatagccga
     1261 cgcggattac taatcattag tgaattatta cttgctgttg gttgtctttt tctggctttc
     1321 aattccaaac tggttaatcc aagtgttagc ttgatattta taatagcctc attaatgtcc
     1381 gccattacag gtttacatag gcctgctttt gatagtgtga tacaacaaat cgtgaaacca
     1441 gaggattaca agaaagtagg cgctcttggc agcttcaaat tcagtttttg tatgattatt
     1501 ggaccagctg ctgctggctt gattattgcg caatatggta ttgtaatcac ttatctcatt
     1561 gatttattaa cctttatcat ttcacttctc aatttgagct taatgcacac catacccaag
     1621 cctttagcca aagagcatcc atccattata gtttctttga aagaaggtat aggttttgct
     1681 ttgcgccgac aagagctgat gggtagttat ttcgttgatt tctttgcgat ggtttttgct
     1741 atgccaaatg cattgttgcc tgctattgcc caacaatttg gaggagctaa aacactagga
     1801 ctactttatg ctgcgccagc tatagggtcg ctgattattt cttttgttag tggctggacc
     1861 gcaaaaatta ctcatgatgg aaaagcgatc gcaattgctg ctgctttgtg gggagtggca
     1921 attatcggat ttggtctcac cacttctttg tggttatctc tcttgtttct tgctcttgca
     1981 ggagcatttg atgccattag tggtattttc agaagcagct tatggaatca taccatcccg
     2041 caagaattga gaggccgcct gtctggaatt gaaatgatta gttatttgag cggcccaaga
     2101 ttgggtgata ccagagcagg ctttgttgca gcaggtttag gcatacctgc tgcattaata
     2161 tcaggcggta ttttatgtat tattggagtg actgtatgct gctatgcctt gcctaaattt
     2221 tggaattatc attcaaagta attaaccact ttactaatct ccaataatag aggctttttt
     2281 atgttgttgc ttggtagtct catccaaact ggccgcttcc gttaatgcgg ctacattttc
     2341 cttggtaaaa aacccatcaa aatggtgaca tctttcaaca tattcagtaa ttaatatgga
     2401 ataaatggag tgtttggaga aaatttgctt taaatcaggt gaatcctcgc aagccccaaa
     2461 tactttagct aaaaattcaa tatttaattt atctcgaaga gtttcaacga caaaatcaat
     2521 attcttttta ccagaagagt gatccccatc ttttacttca taagcaatat gatgcattct
     2581 tctcccgtag ttacgcacaa aggtttctgt gggcataggg agattttcaa aggaattcac
     2641 catgaacgga gtgttgttag cagtaaacac ttttgccggc gacttgatgt catgtccgtg
     2701 tggatttcta tttacattgg tagaggagtt catatcatag atattataag caccccaaaa
     2761 ataatatttg gataaacata aaaactctaa aatagcatcc tcacgctcac cagccaggat
     2821 tcgagtagcc atatggtcaa tgcctttgat caagtctttg atcccattat cgtggctttc
     2881 ctgatctttc gcgtccagca tcgcctcttg ttctttggtt aaataaaatc gttgtcccaa
     2941 ttccagagag tcaaaatcat aaatattatc atcggtatac ccagcgcaat tgtaggtgaa
     3001 atccgataac cgggtaaaat gtatatgttt attacaatag aacttgtttt cagtcatatc
     3061 aggattatga aaattaaaat catgggaaac taatatgtta cgcgtctcat ccttattctt
     3121 gcatttataa atctcaccta cataacgagc attgaattta gctcttgagt tgggatacat
     3181 cttgtttaat cttgtgatat cgtctttaaa attaggatcc aggggctcaa gcaccagaaa
     3241 agcaggagaa tttttggtat tgagtaaaca ataaatttta tgtgtgtcac taatataact
     3301 tcgagaatat cgataagggg tcattgaata gagttcttta atatatggaa tagcatctcc
     3361 cgtttgtacc tgaacaacta ccccacacat atcaccaaat agatcctcaa gtccggatga
     3421 taaacgcctt tcgtaaatct tggttttata ttcattaaaa tagtctgaat tgactttatc
     3481 ccctttggga tggtattcaa ttggattaat catcatgttc tccccaattt gattcaccgg
     3541 cacataatat tttaagtata tacctgccaa tgaattttta tttgaattaa taactgtttc
     3601 ctctctttca tagcaaaata gaggtataat aatttatttt gaatccttac atactttcca
     3661 atggaagctt taatcgtatc acttggggtg attacccttg cagaaattgg cgataaaaca
     3721 caattactcg ccttccttct ggcagcacaa tttaaaaagc cattgccaat tattttggga
     3781 atattgactg ctactttgat aaatcattct ttggctggac ttatcgggat ctggattacc
     3841 actttattaa agccgaatgt tttgcgttgg atacttggca tatcgtttat tctaatggca
     3901 atatggacgc tgatacccga tgaaattgaa caggatgaga aaaaaatatc caaatatctt
     3961 ggtgtttttg gagcaacgtt tatcactttc tttctgtcag aaacaggaga taaaacacaa
     4021 attgcaacca ttgccctggc agcacactac agctccccga tcctggttat tgccggttca
     4081 acccttggaa tgttgcttgc tgatttacca gctgtttatt ttggaaattt attttcccat
     4141 aaaattccca tgaaaataat tcatgctgta gctgcatgcg cttttttaat tattggactc
     4201 attaccatct tgttttgacc gactaggcag gattgctatt taacataagc atctagccag
     4261 ttggtatatc tttttaatct gtcgatgaca aagcttggtt tctccaaagt atgatattca
     4321 ttggggtaaa taactaactg tgttggcaca tctagcgatt tcaaggattg gtataattgt
     4381 tctgacccaa cacaagggac attaacatcc aagccactgc acaaaaataa tgtaggtgtt
     4441 tttatattat tcgctttaag aaaagggtag cttaatttta aatacaattt aggattggtc
     4501 caaggctttc ccaattccag ctcgtattcc ggggtgtatt gatcgacacc ataaccagct
     4561 aaaatattcg ctgctccagc acctgatata gccgccttga aacggctatc tgtagctatg
     4621 acataattgg ttagcattcc tccgtagctc catccgccta ttcccagacg atttggatcg
     4681 accattccct tacctatgac ataatcaaca gaagccaaga cgtcttttac atccaaatta
     4741 ccccaatctg caaaaattgc tttggcataa tgaaatcccc ttccggaact ccctcttgga
     4801 ttaggagcaa taacgacata attattagct accagccact gcatatcaaa gttaaattca
     4861 tggctaaatt gatagactgg tcctccatgc agatagacaa aaccaggaaa taaaataccc
     4921 gactggtatt cagctggctt cattaataat ccatcaactc ttgttccatc aaagctattg
     4981 cactgtatgt cttctgcggg ttgaaattta acttcatcca atagcttttt attatgttgt
     5041 gttaaaggaa ttaatccgga attcaaaata aataattcag agggatgtgt atcatctgtt
     5101 gttaacaaaa taattttccc tttggcaagt gaataatcca tgtcatagcg taagccgcct
     5161 gtcaattttt ttatctggcc ggaatgagtg tctatgcgat tcaaataggt gtttctgctt
     5221 tcttctatta atgcataaat aaatttgcca tcttgagacc attttggctt gtaataccaa
     5281 ttatcccgag gtgcaatgat tttctcatct ttagtattga tatcaataat tgccaattga
     5341 ttgggcgaat aataggtcca ttgatgttca ttactgcgaa gataagctat ttttgaacta
     5401 tctgggctcc atgaaagatt tgaatcgtaa tcaggattca tatcactacc ggagaaatga
     5461 gtgagttggc gctcttttgc cccagacttg ggttcgatca aataaatatc ataattaaaa
     5521 tgcctatccg gatcttttcc acgctttgtg acaaacgcga tgtattttcc atcaggtgac
     5581 caagccggta aatattcatc atgatttcca tcggtcagtt gagtaatagc cttactctta
     5641 agttcaacca aatataaatg atctcttccc ttaccaagat aaccgacacc atcaacctta
     5701 aattgatatc tatctacaac tatgggttgt tcttcctcat tagatggaac actcttctga
     5761 gctataaatg caatcctgtt agaatctgga gaccatgtaa aatcgctcac ttcgccatca
     5821 atatgagtta attgatgttc tttattatcc tggacagatg ctatccaaat ttgtgtcgta
     5881 ccctcttttc cgccatcgga taaataagct aaccatttac cattaggact ccatttgggt
     5941 agcgagcttg atgaatcttc tgcaaaggta attcgttgac tggatttact atccactgat
     6001 actttccata cctcagtcgt ggaaatgtta tctttggcat ttaattggga tacggtatag
     6061 gcaacccatt ttccatctgg tgacagatct ggctcgctga tatcttgtat acgataaaga
     6121 tcatcaagct ctggcaaacg cttcccagcc catccatcat gaaatacaac aagacaaata
     6181 attagaccca ggcatacccc cttcatgaca atcatcctta ttatgctgaa aaatcagaga
     6241 tttatagtgc cttaaaaagt atagaataaa tttgttatat atgatttttc cggcaatcag
     6301 caaacaaatt ttgagtggaa taagtacagt ctggtgtcat tgatttagaa tcgtagctga
     6361 aattcttcag aaataaaaaa atccccgtct gttcaacgag gatcataaaa aggttctaat
     6421 ttatttctgg tatacttttt acggcatgat ccgcttctgt tctttgaaca aactctctaa
     6481 agaaagtctg cgcgctctta cctgatcgat tatgcaatgc attccagtct gaattatgac
     6541 cattagcata ttgtacatca gtctccattt ttctgtcact tttgattttt tccctagctt
     6601 ggactaaagc gtctcttgca ttagccaacc ctggtttcgc aagaggatca gcttttcgaa
     6661 tgatatcatc cagatttgca atttcttcat caatctccgc ctttttctta tgccgctcag
     6721 aagccagttc tttatggata gatgcataat gtggaatcac agcatcatcg atacgttcgc
     6781 cccttatctc ttttcttgac ctaaccacta tgtaatcttt atatgcttca ggaacactct
     6841 tgaatgcact gcctgcatta atttcccatt tagctaaagc aacaccgaat ttaatgaagg
     6901 gcttagccaa ccatccaagt attgtcccta ctgtgctgtc tttatgacct attgctcgac
     6961 caatttcatc acgctctaaa cgcatatgcc ctactaagaa attagtaata gtagagaaag
     7021 aacggctatt aaatagatta attggctgtc caagttgatg aaaatgttgc gctaccaagg
     7081 aagccacgcc tgcaccaaga gaatgacctt tcagggtaat attttgtggc gaaacacctt
     7141 gatctaatag tctttgcact tgtgcaatac catctgcaac caaatcctca cttgatttgg
     7201 ctttgcctgt actttgacca acaccacgaa gattaaaacc aataacattg gccttaagag
     7261 ccttcgaatc ttcttttata tcgtcaatga tatgttcata acacatacca ttccctacca
     7321 aattgataat atatttttgg tatttgggat caatactttc ttgtgaccta tgccttactt
     7381 caaatgtatc taaatgcgct ccatcatgag taattacatc atgtttctca caaatcagat
     7441 cgtcttcatt ataattactt acagtatcat cactaatagc taaatcatca aaattttcat
     7501 tttgtgctgg cagcactaaa ccactaaccc attcaccaag cagtttattg gccccaattt
     7561 ttattaaatc ccataataaa acagggggaa aaaccgttcg aattgcaata aatttaaacc
     7621 attcccaacc actatattta ggttttggtg cattataaat tttagccatg agtccaatcc
     7681 tgtttacata aaattgttca tattatatac agttaatatt aatttaacct taagctgaat
     7741 attataaact taaaaaattg tcttaatctg tgaagtaaaa ataaataaag gatgcgtgat
     7801 cgctcaatat tctatcatta tgctgactta gcttatgagt ttgagccaat caaagacgct
     7861 ggtgataatt aaccaatgct attatgttat atgccatcac aacaatttgc ctctgtaatg
     7921 gccttcattc aactaagaaa tgatacaaag catgatagtt tggctctatg attgaataat
     7981 gttgttttct gcctaaaagg accttcagct gttccgggac aggaatttct tttttcaata
     8041 gtggttctaa tacctcttca aatttggccg ggtgccctgg tgccacaata acccagggtt
     8101 tgtcctgatt gattgtactt agacgatgat aagctgtggc ggtatgaggg caaattatat
     8161 aatgatattt attgtaacaa tgtaggatag cttgcttaat ttgctcatca ctaacagatt
     8221 ctgcattcat ctgtttttta cattcagaat aattattaaa taaaacgaat aagcggtcca
     8281 aattgcttgg ctcacctaca tccatcgctg ttgccaatgt tttagtaacc gatttggctt
     8341 gataagctcc agttaacaaa aattcgccca gtgcactatt aatattatta gctattaaaa
     8401 tttgctcaac cggaaaaccc agcatttttg cccaataaca agccgtaaca ttccccaggt
     8461 ttccgcctgg aactataaaa ttaacagaat gattatgtct taatgccaat tgaatgctgg
     8521 taaaagcata gaaaataatc tgtggtaata atctggctat attcatgcta ttggctgtag
     8581 tcaatattcc tttatgttct cttttggcaa ataccagctt caccagctgt tgacattgat
     8641 caaaactgcc attaacagcc aatgcacgaa tattctctcc ccaacaagta atttgagatt
     8701 gttgtctgaa agtaagttta tctttaggaa ataaaatgat tccttccaga tctcttttcc
     8761 catccaaagc atgagcaatc gcagcgccag tatcaccaga tgttgcgacc agaactttgg
     8821 cgctcttgtt ttctatcaga tgcaataaac attcactgaa aaattgagtt cctaaatctt
     8881 taaaagacag ggttgggcca tgaaacaact ccagtacata acttttctta aaaagatgat
     8941 gtaacggaaa ggagaaggtg aggaattttt gaaaaaaagc attatttaca tcaattttac
     9001 tatctgaaaa aaatggcgag agtaaattaa cagaaaagtc gattaaatta ccgtattcat
     9061 aaaatttttt tattgttaaa ttgggaaacc tgtcaggtac aaataaccca ccatcccctg
     9121 ccaggcctga cagtatcgct tcgtctattg tggagacaca ttgtcctctc gtactcttta
     9181 ttctaatttt catctgcagc ctttgcacct tctgatgaaa tattattaac cagtaagtca
     9241 ctttcaaaga caactttt
//
LOCUS       DACVWI010000117         9191 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.117, whole genome shotgun sequence.
ACCESSION   DACVWI010000117 DACVWI010000000
VERSION     DACVWI010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 9191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9191
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.117"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..486)
                     /locus_tag="JBH85_10265"
     CDS             complement(<1..486)
                     /locus_tag="JBH85_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HAU0946584.1"
                     /translation="MPDDISRKQFSIGDLYCTNELEVSGLIYEIFHQKSYLSDFLTLS
                     PGAVVFDVGANIGIFSLFVLKQCHYDTEIYSFEPVPATFKCLKKNLARFKHNVHVYNA
                     GIGNVPKDCSIDFTLFGESSVTATYKPTDKIISNYQPLLNYETLLKLSSFQNKPLYYQ
                     LK"
     gene            complement(501..1562)
                     /locus_tag="JBH85_10270"
     CDS             complement(501..1562)
                     /locus_tag="JBH85_10270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HAU0946585.1"
                     /translation="MSVRNFMAYHQLSYTFLNHQKLPLIIQPQAKAEGNIDVLKQFLK
                     EENTLFKEQLLNYGAIILRGFHVNTAEQFLEVIRSSDLGPNYSYDFCPIPRTQIRENI
                     YTSINIHPSFNLALHNEKSYDQDFPSHIFFNCIHAPQTGGDTALADGNKIWFSLPKLL
                     QKKLQSKGILYRRHYYGSGIQYKIIRSIGKNSGCMTWMERFQTDDQNKVEVMLQQMGV
                     QFRWIQGNGLIIEQLLPACRNHPISGKLVWFNQSNHANHYYNGTSDYIKSKINNTFSR
                     FILLHKYFHPYIAFYGDGEPLSKQEADCINSAIQKNTVSTAWQPGDVMIVDNFSCLHG
                     KTPHTGNRLILVGLTKYFD"
     gene            2190..3671
                     /locus_tag="JBH85_10275"
     CDS             2190..3671
                     /locus_tag="JBH85_10275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetate--CoA ligase family protein"
                     /protein_id="HAU0946586.1"
                     /translation="MSFFDLLIKKANHLVSQIYKKNYNSITPDQLIWQHIQDCEKQFQ
                     KNQEAIYYSKDILQDLINKRLQTILLHAKTKSPWYKKTLAKINIENFTRERLEELPTI
                     NKTILMENWDAIVTDPKLSLNLVEKHLSKKNDSIDTLYLFSRYQVVSTGGSSGKRGVF
                     IYDWDEWITFHTAFIRYPLYNYERTQIVTTKLNTNPRIVSLFVTNTAIAAYSLAKTFG
                     RGNQNMYFLPMAVTPLNIVITRLNQIQPDILSAGPSYIHKVCQLVQKGQIKIEPKILF
                     VGGEPLFEQTLALIKETWPKVDIFNVFGCTEGMVGLNCRANVDEMHLNDDQCIIEPLD
                     EQNRPVDKGIMVSKMYITNLYNYTLPLIRYENSDEILFLNKTCDCGIHHQLIQTPKGR
                     PGCDFNYPGNIFVHHSLFLGALLPEKNIQEYQVEQTIDGANIRVVTTGFINKSQLQKN
                     IRLRLSKVGLMDAQVNITEVPEIKYLYSGKLNRFIPLNSTDKS"
     gene            complement(3983..5299)
                     /locus_tag="JBH85_10280"
     CDS             complement(3983..5299)
                     /locus_tag="JBH85_10280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide synthase"
                     /protein_id="HAU0946587.1"
                     /translation="MSDNNYSNKIAIVGMAVKFPGANDLDEYWDLLKFGKEAVTKFSE
                     EQLHRSGISEQLIANPNYKPYRGILDDLESFDTAPFENTTKNFELLGVQGKVMSHLTH
                     RALSTMRSQEHHSNNYIKNTAVYIGANNQPAAHFLGAAYYQSIDTQKAIERYYSKVIA
                     PYISYQFGFQGSSIDLYTACSSSLTAVIQSCRELNSHQCDMAIAGACLIDLPQEVGYL
                     YEENGLFSSDGHCHSFDASACGTLYSNGAGLVVLKRLEDAIADHDLIHAVIIGSAMNN
                     DGNSSKEGFMAPGVHGQYTCLQSAWRNAEVEPDDLDYIAAHGSSTKLGDATEIYALKK
                     AFKDVKKTYRCPISSVISNLGHTGIVSGMASIIKTVLMLKNKAIVPSINFETPNPDFM
                     LEDSPIYIATEFQDFPTVKKHYLAGVSSYGAGGSNTHLVLRSYDEN"
     gene            complement(5470..6990)
                     /locus_tag="JBH85_10285"
     CDS             complement(5470..6990)
                     /locus_tag="JBH85_10285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HAU0946588.1"
                     /translation="MRSPDQDTTICSLFEEKVKQYPENTAVYLEDRQISYDAFNKQVN
                     QYARYLQRKGLPLNGIVGIQLTRSFEMLVAIFAVLKAGGAYLPIDPMAPVIRNQTILE
                     DSQIKFLIVSDNSLLTQKAGLQVLSIHANVSDEDCHNLNLPREKQDLAYVMYTSGTTG
                     KPKGVMISHQALVNRILWMQNTFPLQTHDVVFHKTHICFDISVWETCWWSIAGAGVVL
                     LPPGKEHDIKLFIQMIEQYQINVIHFVPSVLRIFLSYIEQDFSINRLSSLKYVFSSGE
                     ALDAKSVNLFNKLLQDQKTILVNLYGPTEATIDVSCFICEKHKDYRTVPIGKPIQNTQ
                     FFVLDEQLNSTGFEPGELYISGVGLAQGYLNNPALTRTSFIDNPYLPGEKMYRTGDIV
                     RWNENHELLFLGRRDDQVKLHGIRIELGEIQHHLLDHPNIQDAVVVCEKVEGLDYRMV
                     VFLIANNQTKIGSAELKSFLKTRLPDYMVPEHYLWLSAFPIKENGKIDKEKLMTFI"
     gene            complement(7007..8134)
                     /locus_tag="JBH85_10290"
     CDS             complement(7007..8134)
                     /locus_tag="JBH85_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAU0946589.1"
                     /translation="MPNYQPRQVKKQQFFNQFIENCLHPHAKKFDKEQNIPRDFFYTL
                     AQNGFLGACIPKQFGGQQWDELTIGIMYESFAKELCSLANILTVLGMVSKSLLQFGSK
                     AQKQIWLPRIASGETLAALALTEPNIGSDLEHVETQLLDAGDEFILNGSKKYITLGQI
                     ADLFLVLANCQGQPTAVLVEKGTPGLIISPMSNFLGLRSNMLAEIFFDNCRIPKTNLL
                     GSIGVGFTYVIQTALDEGRYTTAYGCVGLGQACLDAALGYTQERKQFNRRLDEHQLIQ
                     KMITEMVVQVKAARELCFYAGELRQKKNPAYIAETLIAKYAASKMVVFVSNHALQLFG
                     AAGFDETYPVERYYRDAKVMEIIEGTSQMHEILISKLCINK"
     gene            complement(8165..9019)
                     /locus_tag="JBH85_10295"
     CDS             complement(8165..9019)
                     /locus_tag="JBH85_10295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HAU0946590.1"
                     /translation="MKQKKLTLLGAGTMGSGIAQLFAQCGFYVTLIDNIQSQLDKAKT
                     TIAKNLHYLALTQNLALTHSIETILASIAFTTQLDELKESEYIIENITENWELKKALY
                     QVLNEQGNPTCILGVNTSSIPITKIASLVEHPQRVIGVHFMNPATIMPMVEVIKGYHT
                     DESTIKKTRTLLEQVHKKMIVVKDSVGFVSNRAMMIFINEAIFMVQENIASIEDIDVL
                     FKQCFGHKMGPLHTADLIGLDTVLYSLETIYSELNDPKYRPCWLLKNMVDAGLLGQKT
                     KKGFYQYE"
BASE COUNT         2871 a         1810 c         1609 g         2901 t
ORIGIN      
        1 ttttaattga taataaagtg gcttattttg gaaggaagag agctttaaca atgtttcata
       61 atttaacaat ggttgataat tggagatgat tttatcagtt ggtttgtaag tggcggtaac
      121 ggagctttcc ccaaagaggg taaaatcgat actacaatct tttggaacat ttcctatccc
      181 agcattgtaa acatgcacat tatgcttaaa ccgcgccaaa ttctttttta aacacttaaa
      241 agtagcaggg acaggctcaa aactataaat ttcagtatca taatgacatt gctttaaaac
      301 aaataaggaa aaaataccaa tattcgcccc aacatcaaaa acaaccgccc ctggacttaa
      361 agtaagaaaa tcagacaaat aactcttctg atggaaaatc tcataaatta aaccactgac
      421 ttccaattca ttagtacaat acaaatctcc aatactaaat tgttttcgtg aaatatcatc
      481 aggcattgat atgggtccct ttaatcaaaa tattttgtca atccaaccag gattaatcga
      541 tttcctgtat ggggtgtttt tccatgtaag caggaaaaat tatcaactat cataacatcc
      601 cctggttgcc aggctgtgga taccgtattt ttttgtattg cagagttaat gcaatctgct
      661 tcttgcttcg ataaaggttc accgtcgcca taaaaagcaa tataaggatg aaaatattta
      721 tgtaacaaga taaaacgaga aaaagtgtta ttaatcttgc ttttgatgta atcactggtt
      781 ccattataat aatgattagc atggttactt tgattaaacc agactagttt tccgctgatc
      841 ggatgattcc ggcaggcagg aagcaattgt tctatgatta gcccattgcc ttgaatccat
      901 cgaaattgca ctcccatttg ctgaagcatc acttccactt tattttggtc atccgtttgg
      961 aatcgctcca tccaggtcat gcacccagag tttttgccta ttgatcgaat tattttgtac
     1021 tgtattccag aaccataata atgccttcga tataatattc ctttagattg caattttttt
     1081 tgtaataact ttggtaaaga aaaccatatc ttgtttccat cagccaatgc agtatctccg
     1141 ccggtttgcg gggcatgaat gcaattgaaa aaaatgtgac tgggaaaatc ctggtcatat
     1201 gatttttcat tatgtaaagc aagattaaaa ctcggatgga tatttatcga agtataaata
     1261 ttttctctga tttgtgttcg cggaatcggg caaaaatcat aagaataatt tggccccaaa
     1321 tcgcttgacc ggatcacttc taaaaattgt tcagcggtat taacatgaaa cccacgtaat
     1381 ataatggcgc cataattgag aagctgctcc ttaaacaagg tattttcttc tttaaggaat
     1441 tgttttaaaa catcaatatt accttccgct ttagcttgag gctgaataat taaaggtaat
     1501 ttttggtggt tcaaaaaagt atagctgagt tgatgatatg ccataaaatt cctcactgac
     1561 aatccggagg tttactatca gactttcaga gtgtaggtcc ttcctgattc tataagtggc
     1621 tccctctttt tcacctatat tacaaaaatt accgcatcat ctttgacgaa tacctatatt
     1681 aaatagtata gacactgacc ttgctatgca atgaaaatcc accagatttt gccaaagaag
     1741 ctcctgctga atcactcaag caggacttac gaaaaacccc aaggtcaagg caaaaaatgt
     1801 ttttaattaa actaaatgac cgaattaaaa acatttttta acatagagat tggggttttt
     1861 cgtaagtcct gtcaaattat ctgtggatag catcgacttt aacatcatca ccttctaact
     1921 tcgatgagaa ctctttgcaa ttgcataaat cattaaactg cactgaaaat tactgataac
     1981 ggcactacct tatataatag aatatcctgc ttggttttaa gctataatct tcttaggtat
     2041 tttaatctta tggtgactgc caatcaaaag ttaatccagg ccacctattg attaaaatcc
     2101 cgtttaggaa tatcaccact aattatgggt tctctcaaag accatgcctt atagtgtaag
     2161 gatagcgccc tgggaaaaag gggagtaaca tgtctttttt tgacctctta ataaaaaaag
     2221 ctaatcactt ggttagccaa atctataaga agaattataa ctctataact ccagatcaac
     2281 tgatatggca gcatattcaa gactgcgaga aacagtttca aaaaaatcag gaagctatct
     2341 attattctaa agacatactg caagacctaa tcaataaaag actgcaaaca atattacttc
     2401 acgcgaaaac aaaatctccc tggtataaaa aaacactggc aaaaatcaac atagaaaact
     2461 ttaccagaga gcgattagag gaactcccta ctataaataa aaccatttta atggaaaatt
     2521 gggatgcaat tgtcactgat cccaaacttt cattaaatct agttgaaaag catctgagta
     2581 aaaaaaatga cagcattgat accctatatt tattctcccg ctatcaggtc gtgtcaactg
     2641 gaggaagcag tgggaaacgc ggcgtattta tttatgattg ggatgaatgg attacatttc
     2701 acaccgcatt tatccgctat ccactttaca attatgaacg cacgcaaatt gtaactacca
     2761 agctaaacac aaacccaaga attgtcagcc tgtttgtaac aaatacagca attgcagcct
     2821 attctttagc aaaaaccttt gggcgaggta atcaaaatat gtattttctg cctatggctg
     2881 taaccccatt aaacatagtt atcactcgtc tcaatcaaat ccaacccgat atcttaagtg
     2941 ctggcccttc atatattcac aaagtatgtc aattggttca aaaaggacaa ataaaaattg
     3001 aacccaaaat tctttttgtt ggaggagaac cactttttga gcaaaccttg gctttaatca
     3061 aagaaacctg gcctaaagtg gacattttta atgtatttgg ttgtactgaa gggatggtag
     3121 ggctaaattg ccgggcgaat gtggatgaga tgcatttgaa tgatgatcaa tgcattattg
     3181 agcctctgga tgagcaaaat cggcccgttg acaaaggaat tatggtctcc aaaatgtata
     3241 taactaattt atataattac actttaccat taatccgcta tgaaaattca gatgaaattt
     3301 tatttttaaa taaaacctgt gattgtggca tccaccatca gcttatacaa acccctaaag
     3361 gtcggcctgg atgtgatttt aattatcctg gtaatatttt tgtacatcat tcgcttttct
     3421 tgggagcact cttgccagaa aaaaatattc aggaatatca ggtcgaacaa acaattgatg
     3481 gggctaatat cagggttgta accaccggtt ttataaacaa gagccaattg caaaagaata
     3541 tacgcttacg attaagcaag gtgggtttga tggatgccca agtcaatatc acagaggtac
     3601 ctgaaattaa atatttgtat tcgggtaaac tgaatcgttt tataccattg aattcgactg
     3661 acaaatctta gtgacaggaa ttatttcctg tatggtaaaa taccaggatg aaaacacagc
     3721 taaccgccat ttcttcattt actcttgttt gtcgatgagg aaatctcaaa caatttaaat
     3781 accaagatct gtatacccaa tccgcatctg cacgtctcaa gcctgtcaga gatggccttc
     3841 gagacgtggc tttagccact cctcaggccg aacgtaacaa aatgtcatgt tcctcgctgc
     3901 ttaaattcta catagctctc taacgagcaa tccgcagcag gtaaactttt aacaggaata
     3961 aaaaaaaaat atcaatagaa ccctagtttt catcatagct gcgcaaaacc agatgtgtat
     4021 tgctgcctcc tgccccatag ctggaaacac cagccaaata gtgttttttt actgtaggga
     4081 aatcttgaaa ttcagtggcg atgtatatag gtgagtcttc caacataaaa tctggattag
     4141 gagtttcaaa attaattgaa ggaacaatag ccttattttt gagcataagt actgttttga
     4201 tgattgaagc cataccggac acgatgcctg tatgacccag gttacttatc accgaactta
     4261 ttggacatct atatgtcttt ttaacgtctt tgaacgcttt tttcagggcg tatatttctg
     4321 ttgcatcacc cagtttggtt gaggatccat gagctgcaat ataatccaaa tcatctggct
     4381 caacctctgc atttcgccaa gcagactgca agcaagtata ttggccatga acccctggtg
     4441 ccataaatcc ttcttttgaa gaattaccat cattattcat ggcggatccg ataatcacag
     4501 catggattag atcatgatct gcaatggcat cttcaagtcg ctttaaaaca actaacccag
     4561 caccatttga gtataaagtg ccgcatgctg aagcatcaaa tgaatggcaa tggccgtcgg
     4621 atgaaaataa gccattctct tcataaagat acccaacttc ctgaggtaaa tcgattaaac
     4681 acgcacctgc aattgccata tcacattgat gactgtttaa ctctctacag ctttggatga
     4741 ccgcagttaa agaagatgag caagctgtat ataaatcaat ggagcttcct tgaaatccaa
     4801 attgataaga aatataaggc gcgatgactt ttgaataata cctttctatc gctttttgag
     4861 tatcaatcga ctggtagtag gcggctccca ggaaatgcgc ggctggttga ttatttgcgc
     4921 caatataaac agctgtattt tttatgtagt tatttgaatg atgttcctga cttctcatcg
     4981 tactcaaagc acgatgagtt aaatgcgaca tcactttgcc ttgcacaccc aacaattcaa
     5041 aatttttggt ggtattctca aacggagcag tatcgaatga ctccaggtca tctaatatcc
     5101 ctctgtaggg tttgtaattg ggattagcga ttaattgctc tgaaatacct gaccgatgta
     5161 attgttcttc ggaaaattta gttactgctt ctttaccaaa cttcaataaa tcccaatatt
     5221 catcaagatc attggctccg ggaaatttta cagccatacc aacaatagca attttgtttg
     5281 agtagttatt gtcactcata atttatggct ccatttcttt ggccgcactc aacatgtaat
     5341 aaacactaac cagacgacat tggaagggtt catagcatga aacatagtct acgttattcc
     5401 tgcaaccagc ttttaattaa gtataagtca ttttcctcaa ttatttttat tactcagatg
     5461 ttgcccaagc taaatgaaag tcattaattt ctctttgtct atttttccat tttcttttat
     5521 tgggaatgcg cttagccata gataatgctc tggtaccata tagtctggaa gcctggtttt
     5581 taaaaacgat ttaagttcag cgctgccaat ctttgtttga ttattagcaa ttaggaacac
     5641 gaccattcta taatcaagac cctctacttt ctcacagaca acgacggcat cctggatgtt
     5701 gggatgatct aataaatgat gttgtatttc tcctaattca atacgtatac catgtaattt
     5761 gacctgatca tccctgcgac ctaaaaacaa taattcatga ttttcattcc aacggactat
     5821 atctccagta cgatacattt tttctccagg caagtaggga ttgtctataa acgatgtccg
     5881 agtaagcgct ggattattta aataaccctg agccaatcca actccggaaa tatatagctc
     5941 tccaggttcg aaaccggttg agtttaactg ctcatctaac acaaaaaatt gagtattttg
     6001 gataggctta ccaattggca cagtgcgata atctttatgt ttttcacaaa taaaacagga
     6061 aacatctatt gtagcctctg tgggtccgta taaattgact aatattgttt tttgatcttg
     6121 aagtaactta ttaaatagat taacactttt ggcatccagt gcctctccac ttgaaaagac
     6181 atactttaaa gagcttaagc gatttatcga aaaatcctgt tcgatgtaac ttaaaaatat
     6241 tcgtaatacg gagggtacaa aatgaataac gtttatttga tattgctcaa tcatttgaat
     6301 aaatagcttg atatcatgtt cttttcctgg cggtaatagt actactccgg cccccgcaat
     6361 agaccaccaa caggtttccc aaactgagat gtcaaagcaa atgtgtgttt tatgaaacac
     6421 tacatcatga gtttgcaatg gaaatgtgtt ttgcatccat agaattcgat ttaccagagc
     6481 ctgatgtgaa atcatgaccc ctttcggttt gccagtagtg cctgaagtat acatcacata
     6541 agctaaatcc tgtttttctc gaggcaggtt taaattatgg caatcttcat cgctcacatt
     6601 ggcatgaatg cttaatactt gcaacccagc tttttgggtc aataatgaat tatcactaac
     6661 aattagaaat ttgatttggc tgtcttcaag gatggtttga tttcttatga ccggagccat
     6721 gggatctatc ggtaaataag cacctcctgc ctttaatacc gcaaaaattg ccaccagcat
     6781 ttcaaaagaa cgcgtgagct gaatgcccac aattccattt aatggcagtc cttttctttg
     6841 cagataccgt gcgtattggt tgacttgttt attaaaggca tcatacgaaa tttgacgatc
     6901 ttccagataa accgctgtat tttctggata ttgctttacc ttctcctcaa ataaggagca
     6961 aattgtcgtg tcctgatcag gagatctcat tgtttaataa tatcctctat ttattgatgc
     7021 aaagtttcga aatgagtatc tcgtgcattt gcgaagttcc ttcaatgatc tccattacct
     7081 tagcatctct gtaatatctc tcaacaggat aggtttcatc aaaaccagct gcgccaaaca
     7141 gctgcagtgc atggttagat acaaaaacga ccatttttga agccgcgtat tttgctatta
     7201 atgtttcagc tatgtatgct ggattttttt tttgcctaag ttctccggca taaaaacaca
     7261 attcccgggc ggctttaacc tgcaccacca tttcagttat cattttttga atgagctgat
     7321 gttcgtctaa cctgcgattg aattgttttc tttcttgagt atagccaaga gccgcatcca
     7381 ggcaagcttg ccctaaacca acacatccat acgctgttgt ataacgtcct tcatctaaag
     7441 cagtttggat aacataggta aaaccgacac caatactacc cagcagattt gttttaggaa
     7501 ttcggcaatt atcaaaaaaa atctctgcca gcatattaga gcgtaaacct aaaaaattag
     7561 acatgggtga aataattaaa cctggcgtgc ctttttcaac taaaaccgca gtaggttgac
     7621 cctggcaatt tgccaaaacc aaaaacaaat ccgctatttg ccctaaggta atgtattttt
     7681 tactgccatt tagaatgaac tcatcacctg catccaacaa ctgagtttca acatgttcca
     7741 aatcgctgcc tatattaggt tctgttaaag ctaatgcagc taaagtttct cctgaggcaa
     7801 tccggggtaa ccagatttgc ttctgtgctt ttgaaccaaa ctgcaaaagt gacttactca
     7861 ccatgcccaa tactgttagg atatttgcca aagaacaaag ctctttagca aaggattcat
     7921 acatgatacc gatggtcaat tcatcccatt gttgcccgcc aaattgtttg ggaatgcaag
     7981 cgcccaaaaa accattttga gccaacgtat aaaaaaaatc gcgcggaatg ttttgttctt
     8041 tatcaaattt ttttgcatga gggtgaagac aattttctat gaattgatta aagaactgtt
     8101 gttttttcac ttgtcgaggc tgatagttgg gcaaaattcc tctccttagt ggctgtttgc
     8161 aattctactc atattgataa aatccttttt ttgttttttg tccaagaagc cctgcatcga
     8221 ccatattttt taataaccag catggtcgat actttggatc gttcagctct gaatagattg
     8281 tttctaaaga atagagaacc gtatccaacc caattaaatc ggcagtatgc agcggcccca
     8341 tcttatgccc aaagcattgt ttgaatagaa catcgatgtc ttcgattgat gcaatgtttt
     8401 cctgtaccat aaaaatggct tcgttaataa aaatcatcat ggcacgatta ctcacaaaac
     8461 caacggagtc cttaacaacg atcatttttt tatggacttg ctcaagtaag gttctggttt
     8521 tttttattgt cgattcgtca gtgtgatatc ccttaatcac ttctaccata ggcattatcg
     8581 tcgctgggtt cataaaatga acccctataa cgcgttgggg atgttcaacg agcgatgcta
     8641 ttttagtaat aggtatagag gaggtgttta cccccaaaat acaggttggg ttgccttgtt
     8701 catttaatac ctgatacagt gcttttttta gctcccaatt ctcagtgata ttttctataa
     8761 tatattccga ttccttaagt tcatctaatt gtgttgtaaa agcaattgat gccagtatag
     8821 tttcaataga atgggtcaat gctaaatttt gagttaatgc cagatagtgt aaatttttag
     8881 ctatagtggt ctttgcttta tccagttgag attggatgtt atcgattaaa gtgacataaa
     8941 atccgcattg cgcaaaaagc tgtgcgatac ctgaacccat tgttcctgca ccaagaagcg
     9001 ttagtttttt ttgtttcatg ccgtttgtcc accaaagctt attacagtta ttcgtattgg
     9061 attacaagta aaagctcaat tctggccgtt tgttccaaat cccgcataaa ggttcttggc
     9121 ctattaccat tatagtttac tggaaataaa gtaagcgata tcatcaatgc tggttaactg
     9181 gttcggatta a
//
LOCUS       DACVWI010000118         8951 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.118, whole genome shotgun sequence.
ACCESSION   DACVWI010000118 DACVWI010000000
VERSION     DACVWI010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8951
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.118"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(15..509)
                     /locus_tag="JBH85_10300"
     CDS             complement(15..509)
                     /locus_tag="JBH85_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HAU0946591.1"
                     /translation="MGHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSS
                     NWFERGFVTYSNLAKEEMLAVAHELIQTHGAVSEEVALAMAVGALQHSMGNIAVSVTG
                     IAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLK
                     KVCG"
     gene            complement(586..780)
                     /locus_tag="JBH85_10305"
     CDS             complement(586..780)
                     /locus_tag="JBH85_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946592.1"
                     /translation="MNRLAMIAAASCLALFLTGCGEGSKPADTKTDQQQQQQPTDQQQ
                     QGGENTGNNQAQPSTEGQGQ"
     gene            1071..3668
                     /gene="mutS"
                     /locus_tag="JBH85_10310"
     CDS             1071..3668
                     /gene="mutS"
                     /locus_tag="JBH85_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HAU0946593.1"
                     /translation="MTSHNTFVKIGAISIGSITMASSHTPMMQQYLRIKTDYPDMLLF
                     YRMGDFYELFFDDAKRASQLLDLTLTHRGQSADKPIPMAGVPYHAVENYLARLLKKGE
                     SVAICEQIGDPATSKGPVERQVTRIITPGTVTDEALLDARKDNILLAIHTQKQKIGIA
                     WVDLGGGRFHLQELTEEHQLNAELVRLQPAELLCKESTPLPSFCSNFAVKFRPGWEFD
                     ASNAHKLLCEQFSVTDLSAFGEQNYPTALIAAGALLAYLKTTQKQSLPHLTTLTLEQS
                     EDYLQLDASTQKHLELFENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAII
                     QTRQQAIKEIIFLQQDVSLHQLIKQCADVERIVSRIALKSARPRDLVSLLQTLTLLPA
                     IHDELQENKSLLINEIKKEISPLPLLQQLLETAIIDNPPMLIRDGGVIAPGFDEELDE
                     LRNLSSNAHETLVKLEQEEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQ
                     TLKNVERYITPELKLFEDKVLSAQSKALAREKWLYDNLLEEIQQYIPELSDLAKSLAQ
                     LDVLVTLAERAQSLNWNCPNLVPESGIMIQAGRHPVIEPLLQERFIANDLELKPNQNM
                     LLITGPNMGGKSTYMRQTALIVLLAHIGSFVPADKVTLGPLDRIFTRIGASDDLSSGR
                     STFMVEMTETAQILRQATSQSLVLIDEIGRGTSTYDGMALAYASCAFLASTIKAYTLF
                     STHYLELTELPKEFSCIRNVHLQASIKTGQIVFLYRVEEGCANRSYGLEVAELAGIPK
                     EVLKLAHEHLNQIQDTQSILVQTQIIKPPTSPVLTELKKIDPDRLTAKEALDLIYKLK
                     HLECAESIN"
     gene            3681..5369
                     /locus_tag="JBH85_10315"
     CDS             3681..5369
                     /locus_tag="JBH85_10315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HAU0946594.1"
                     /translation="MNRFAYLIILIILYFPLFAQDKKAGLLEIDGIKGKVLANVETRL
                     GELSQIKPLSQFTPTELQDQINKAIQPFGYFNAETSINNLNNKIIIKVQPGSQIRIAS
                     IKAMLTGEGAQNPLLRKTLKELPLHIGDPLFSEQYEKAKQNIINTAENMGYLHGVFKK
                     AEILIDEHKKSAQITLIFDTGPQYYFGQVQFDPTYISPQLLHRFVPFDPGQPYATDQV
                     LKLNDYLSNSGYFSSVLVKPQITDAQTVPVIVHLQPVPKYSYSFGLGYGTDTGVRGKA
                     ALHVIPVNRQGHKFNAVAQGSFRQNALQAQYVIPGKNPVTDQYALTGNFSNLNYNAGY
                     SNATLLSLSQLHNVNQFQRALSLNALYESFHYSLQPNTDQFLLYPKANITFSKTKNLL
                     FSPSGYNITFNALGANKAVLSHLNFGQLSLDAKAALTLDSLHLRLYGHTIQGITAIND
                     INELPLSLALLLGGTDNLKAYSFNSIGPGKIITYGGFEIQKEFKKNWYLVGFYDAGDV
                     YNPSVKNIQYDIGGGLMWVSPIGPIKVGLAQSVDNKMERIGHNPRLVISMGPDL"
     gene            5366..7906
                     /locus_tag="JBH85_10320"
     CDS             5366..7906
                     /locus_tag="JBH85_10320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF490 domain-containing protein"
                     /protein_id="HAU0946595.1"
                     /translation="MMILKFIKKGFYYCLITAICLVSLIIFLISTTPGLYAVIKLTHL
                     YLPGTLKIHHLKGQLLDQFSIGEMEYQHQDTKIKIFNLAVNWRFSSLLRKKLPIDSMS
                     AEKIEINQKTPILILKNIKLSGYLNQQLIKLNTLQFNYWNQLITSQLEVSNSFPHAFS
                     GKIRLNPHSTNKNIFSGGVDIGGNRNQTQWGGEFEGPGKITINGSLQQLKQIKQIIKW
                     RDLHWQDNKNHNLKSSQGRIEVSGTIPNLAIDLKSKLGIDQLKNWQMNASIKGKLPWQ
                     WSVNATFSQPLDFSSKLDGLYTKFALKMETQSDHHANFLITIAPGHYQMTENNLMPLI
                     QFTGGNIKGSLSPKQFSGQGVLFLDAYKKVNFNFKFPEFNVYQDIAQQTIDAKLSILF
                     NSLDFLQNVSPYFMNPKGQLLASIHAKGTLNKPRIESKLTLNKGSVNIPTLGLNITDM
                     GLAVFSKKDGWEATGSIHSSEKKLTLKGQGSFNKELGGTVSIEGSNFPVANTKEFQVN
                     ISPQLNVRFTPSLCQITGTIQIPNAHIKPQTFTNSLVATDDIVFTSKNTQPITPLFNT
                     NMSVRVEMGEEVELTFKGLHAYLAGIVTINQLSQGPITANGELAVKKGEYKAYGQDLS
                     IEQGQLIFTGGRIDNPEINLRASKNISNSFGSVSGSSELFNFNNYNNLNVGNNFNVGV
                     EVAGRLQSPKIQLFSNPPTLSQADILSFLVIGRPANQADKAKGQLLLTAISSMNLGTG
                     TNGTQLLEQLKQKLGFDFNVQTTTNFNQQTNKISESTGVVVGKSLSDRIYLSYNVGLS
                     QTDPNVLTLKYILNKFLSIQVSSSDSGNGVDVLYTKSSSSPKKTKPDK"
     gene            7940..8935
                     /gene="hemB"
                     /locus_tag="JBH85_10325"
     CDS             7940..8935
                     /gene="hemB"
                     /locus_tag="JBH85_10325"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HAU0946596.1"
                     /translation="MNEYNLPLRLSRLRKNAMSRALVRETRLHAQQLIAPLFISEYLT
                     EPKEIGAMPGQFQLGLNCIPEEIEILSKSGIPAVILFGIPKHKDAYGSESFNSNGIIQ
                     QAIKKIKSVNSDMLVITDLCFCEYTDHGHCGVLNGTQINIAATLELLGKQAVSHAEAG
                     ADWVAPSGMTDGMVLAIRQALDHASFHEIPILSYSAKYCSCLYGPFREAAQGAPQFGD
                     RKAYQMDPANSEEAVRETRLDLEEGADMIMVKPAGFYLDIIYKLKQHFADVPLCAYQV
                     SGEYSMIKNAAKNNLINEEQAMTESLIAIKRAGADFIISYFAKGMAELLNSQNFI"
BASE COUNT         2960 a         1773 c         1610 g         2608 t
ORIGIN      
        1 aaaaaaccat tcggttagcc acagactttt ttaagagtag aaagaactcc atttaaagca
       61 tattgacagg cagacaaacg tatttcttgc cgacttccag tgaattgttg tcttgatgtt
      121 tgttgaaatt gatggtgaac tgcccaggca aagcatacag tacctactgg tttttcaata
      181 ctgcctcctt ctggacctgc gatgccagta actgatacag cgatattacc catactatgt
      241 tgtaacgcac caacagccat agccaaagcc acttcttcac tgactgcccc atgagtttgt
      301 attagctcgt gagcaacagc aagcatttcc tctttagcta aattactata agtaacaaaa
      361 ccacgctcaa accaatttga gcttccaggt atttccgtaa ggcaagcagc aattaaacct
      421 cctgtacaag attccgcagt cactaattgc cattttgctt tttttaaata ggcagctatt
      481 tcttcaacca gtattgagaa atgacccata cctttcacct ataaaaaacc ccataaaaca
      541 tctatggggt tttttgataa tttataaata acactgaaat taatcttact ggccttggcc
      601 ttcagtagaa ggttgggctt ggttatttcc agtattttca ccaccttgtt gttgctgatc
      661 agttggttgt tgttgctgtt gttgatcagt ctttgtatct gcaggcttcg agccctcacc
      721 acatccagtt aaaaataatg ctagacaact agcagcagca atcatagcta aacgattcat
      781 aatcactctc cctatttatt ttttgtaata tcacgttaat tctagcaaat attctcatta
      841 agtgaagaac ttatctcctg aacttaaaaa ataaaattta tattttattg cagtatgtta
      901 aattaaatga cataaaccat gccttagtaa tcattttggc aaattctata gtaatttgca
      961 gattttaaaa atcatactta ttttttagac acatcaaggt tatattaaat gctttttgat
     1021 cacattgtct ttattgtttt cataaaaatc aataccacca acatgcctta ctgacttcgc
     1081 acaacacttt tgttaaaatt ggggcaattt caatcggctc aatcactatg gctagctctc
     1141 acacaccaat gatgcagcaa tatttgcgca ttaaaacaga ctatcccgac atgcttttat
     1201 tttatcgcat gggtgatttt tatgagttgt tttttgatga tgccaaacgc gcgtcacaac
     1261 ttttggattt aactctgaca catagaggac aatctgctga caaacctatt cccatggccg
     1321 gcgttcctta tcatgcggta gaaaactatt tggcacgatt attaaaaaaa ggggaatccg
     1381 tagccatctg tgaacaaatc ggagatccag ctaccagcaa aggaccagta gaaagacaag
     1441 taacgcgaat cattactcct ggtacagtaa cagatgaagc attattagat gccagaaaag
     1501 ataatatttt gttggccata cacacccaaa aacaaaaaat tggtattgca tgggttgatt
     1561 taggtggcgg tcgttttcat ttgcaggaat taacagaaga acatcagtta aatgcagagt
     1621 tagtgcgcct gcaaccagca gaactcctct gcaaagaatc cacgccgctt ccttcatttt
     1681 gttctaactt tgctgttaaa ttcagaccag gatgggagtt tgatgcaagc aacgcacata
     1741 aattattgtg tgaacaattc tccgtgactg atctttcggc ctttggcgaa caaaattacc
     1801 ccactgcctt gattgcagca ggcgctttat tagcttattt aaaaaccact caaaaacagt
     1861 cattaccaca tcttacaaca cttactcttg agcaatccga ggattacctg caactggacg
     1921 catcgactca aaagcacttg gagctttttg aaaatataca tggtggtggt gagcactgtt
     1981 tgctttccat attagataaa acagcttgtg cgatgggaag ccgtttactc aaacgttggc
     2041 tgggaaaacc attaaaacaa catgcaatca ttcaaacaag acaacaagcc attaaggaaa
     2101 ttatttttct tcaacaagac gtttcacttc atcagctgat taaacaatgc gccgatgtgg
     2161 agcgcatagt atcacgtatt gctttaaaat cagcgcgccc acgtgatttg gtttccttat
     2221 tgcaaactct gacactgctt ccagcaatcc atgacgaatt acaagaaaac aagagcttgt
     2281 taatcaatga aatcaagaaa gaaataagcc ctctcccact gctgcagcaa ctgcttgaaa
     2341 cagccattat agacaacccg ccaatgctaa ttagggatgg tggagtcatt gctccaggat
     2401 ttgatgaaga actggatgag ttgcgtaatt taagtagcaa tgctcatgaa acattagtaa
     2461 aacttgaaca ggaagaaaaa aatcgcacag gattatccac tctaaaacta ggttacaata
     2521 gcgttcaggg attttatatt gaactgtcaa aggcacaagc tcaaaatgcg ccgccccatt
     2581 ttcacagaaa gcaaacttta aaaaatgtgg aacgttatat tactcccgaa ctaaagctgt
     2641 tcgaagacaa ggtgctttca gctcaatcca aagcattggc tcgcgaaaaa tggctatatg
     2701 acaatttgct tgaagaaatt cagcaataca tacctgagtt atcggatctt gcaaaatctc
     2761 tggcgcaatt ggacgtattg gtcactcttg ctgaaagagc acaaagttta aattggaatt
     2821 gcccgaatct cgttcctgaa tcaggcatta tgatacaagc cggacgacat cctgtcattg
     2881 agccattatt acaagaacgg tttatcgcta atgatttgga acttaaacca aatcaaaata
     2941 tgttactaat cactgggccc aacatgggcg gcaaatcgac ctacatgagg caaaccgcct
     3001 taatcgttct gttggcacat attggaagtt ttgtacctgc tgataaagtg acattaggtc
     3061 cattagaccg aatctttact cgcattgggg ccagtgatga tttatcctct ggacgttcca
     3121 cttttatggt ggaaatgact gaaacagctc aaatattaag gcaggcaacc agccaaagcc
     3181 tcgtattaat cgatgaaatt ggtcgtggta ccagtaccta tgatggaatg gcattagctt
     3241 atgcaagctg tgcctttctt gcgtcaacaa taaaagccta tactttgttt tctactcatt
     3301 acctggagtt gactgaatta cccaaagaat tctcttgtat tcgcaacgtg catttgcaag
     3361 catccatcaa gacaggacaa attgttttct tgtaccgtgt cgaagaaggt tgcgcaaatc
     3421 gtagttacgg attagaagtc gcagaattag ctggcatacc taaagaagtg ctaaagctgg
     3481 ctcatgaaca tctgaatcag atacaagata ctcaatctat cctggtccag actcaaatta
     3541 taaagcctcc cacatctcca gttttaactg aactaaaaaa aattgatcca gatagattaa
     3601 ctgccaaaga agcgttggat ttaatttata agttaaaaca cctggagtgt gccgagagca
     3661 tcaattgatg tagttattac atgaataggt ttgcatattt aatcatacta atcattttgt
     3721 attttccatt gtttgctcag gacaaaaagg ccgggctgct tgagattgat ggtataaaag
     3781 gaaaagttct tgctaatgtg gaaactcgtt taggtgaatt gagccaaatt aaacctttaa
     3841 gccaatttac cccaactgaa cttcaagacc aaattaataa agccattcaa ccatttggat
     3901 atttcaatgc ggaaaccagt attaataacc tcaacaataa aataataata aaagttcaac
     3961 ctgggtctca aattcgtatt gcctccatta aagcgatgct aacaggagag ggagcacaaa
     4021 atccattatt acgaaaaact ctgaaagagt tacctctgca tattggagat cctctgtttt
     4081 cagaacaata cgaaaaagca aaacaaaata ttataaatac cgcagaaaat atgggatatt
     4141 tacacggcgt atttaaaaaa gctgaaatat tgatagatga acacaaaaaa tcggctcaaa
     4201 tcaccctgat ttttgatacg gggccccaat actattttgg ccaggtgcaa tttgacccaa
     4261 cctatatttc tcctcagcta ttacatcgtt tcgtaccatt tgatcctggc caaccttatg
     4321 ccacagatca agttttgaaa ttgaatgatt atttatcgaa cagcggttac tttagttctg
     4381 tactggtaaa accccaaatt actgacgccc aaacagtacc ggtcattgtt catttgcaac
     4441 ctgtacctaa atattcctat tcatttggcc ttggctatgg aacagacaca ggagtgcgtg
     4501 gaaaagcagc tcttcatgtg attccagtca atcgccaagg acataagttt aatgccgtag
     4561 cgcaaggctc tttcaggcaa aacgccttac aagcccaata tgtaatcccc ggaaaaaacc
     4621 ctgttaccga tcaatatgcc ttgaccggta atttttcaaa tttaaactat aatgcaggtt
     4681 atagtaatgc tactctctta tccctgagcc aattgcataa tgtgaatcaa tttcaaagag
     4741 cgctttcact gaatgctctg tatgaaagtt ttcattactc tctacaaccc aatacggatc
     4801 agtttttgct ctaccccaaa gccaatatca ctttcagtaa aactaaaaat ctcttgtttt
     4861 cgccatcagg gtataatatt acttttaacg cgcttggggc gaataaggct gtcctctccc
     4921 atctgaactt tggacaactt tcactggatg ccaaagccgc gctcacattg gattcactgc
     4981 atttgcgcct gtatgggcat accatccaag gtattacagc aatcaatgat atcaatgaat
     5041 taccgctttc cctggcatta cttctgggag gaactgacaa ccttaaagcc tatagtttta
     5101 actctatcgg accaggaaaa attatcactt atggtggctt tgaaattcaa aaagaattca
     5161 aaaaaaactg gtatcttgtt ggattttacg atgctggaga tgtttacaat ccatccgtta
     5221 aaaacattca atacgatatt ggaggcggtc tgatgtgggt ttcccctatt gggccaatta
     5281 aagttggatt agcccaatca gtcgataata agatggagag aataggacac aatccaagat
     5341 tggttatcag tatgggacca gacttatgat gatattaaaa tttataaaaa aaggatttta
     5401 ctactgctta ataacagcaa tatgtctggt tagtttgatt atctttttga tttcaactac
     5461 cccggggcta tatgcagtaa ttaaattaac tcatttatat cttcctggca ctcttaaaat
     5521 acaccatctt aaaggacaat tacttgacca attttctatt ggtgaaatgg aatatcaaca
     5581 tcaagacact aaaataaaaa tttttaacct ggcggttaac tggcgtttca gctcattgct
     5641 tcgcaaaaaa ttgcctattg atagcatgag tgctgaaaag attgaaataa atcaaaagac
     5701 gcccatactg atactaaaaa atatcaaatt aagcggttat ttaaatcaac aattaattaa
     5761 actgaataca ctgcaattta attattggaa tcaattgatt accagccaat tagaagttag
     5821 caactcattt cctcatgcat tttcaggaaa aattcgttta aacccacatt ctacaaataa
     5881 gaatatattc tcaggagggg tagacattgg cggtaatcgg aatcaaactc aatggggagg
     5941 agaatttgaa ggtcctggaa aaataacaat taacggcagt cttcaacagt taaaacaaat
     6001 aaaacaaatc ataaaatggc gtgacttaca ttggcaagac aataaaaatc acaatttaaa
     6061 aagctcgcaa ggaagaattg aggtatcggg aacaattcca aatttagcta tcgacttaaa
     6121 atccaaactt ggcatagatc aattaaaaaa ttggcaaatg aacgcttcga ttaagggcaa
     6181 gctgccttgg caatggagtg tcaatgctac gttctctcaa ccattagatt tctcatcaaa
     6241 acttgatggt ttatatacaa aatttgcttt gaaaatggaa actcaaagtg accatcatgc
     6301 caactttctg atcacgattg ctccaggcca ttatcaaatg acagaaaaca atctgatgcc
     6361 gttaattcag tttactggcg gcaatattaa aggctctctt tccccaaaac aattcagtgg
     6421 acaaggagtt ctctttctag atgcatataa aaaagtcaat ttcaatttta aattcccgga
     6481 gtttaatgtc taccaagata tagcgcagca aacaatcgat gcgaaactat ccattctttt
     6541 taactccctg gattttttgc aaaatgtcag tccttatttc atgaatccca aaggacaact
     6601 tcttgcctcc attcatgcaa agggaacttt aaataaacca agaattgaaa gtaaactcac
     6661 tttaaacaaa ggctcagtga acatccctac tttaggcctc aatataactg atatgggatt
     6721 agctgttttt agcaaaaaag atggatggga agcaactggc tccattcatt catctgaaaa
     6781 aaaactaacc ctaaaaggac aaggtagttt caataaggaa cttggtggaa ctgtttcaat
     6841 agaaggttct aattttccgg ttgcaaacac taaggaattt caggttaata tatctccaca
     6901 gttaaatgtg cgctttactc catcactatg tcaaatcact ggaaccatcc aaattcctaa
     6961 tgcccatata aaaccacaaa cgtttaccaa tagtcttgtg gctacagatg atattgtatt
     7021 tacgagtaag aatactcaac cgattacccc actctttaat accaacatgt cggtacgagt
     7081 tgaaatggga gaagaagttg aactgacctt taagggattg catgcttatt tggcgggtat
     7141 agttacaatc aatcaattat cgcaaggacc cataacggca aatggtgagt tagctgtcaa
     7201 aaaaggagaa tataaagcct atggccagga tttatctatt gaacaaggac aattaatttt
     7261 tacaggcggt agaattgata acccagaaat taatctaaga gcatcgaaga atatatccaa
     7321 ttcatttggt agtgtatcag gatcctctga gctgtttaat tttaataatt ataataacct
     7381 caatgttggc aacaatttta atgttggggt cgaagtagct ggacgattac aatcgcctaa
     7441 aattcaatta ttctctaacc ctccaacact ttctcaagca gatatcctat cttttcttgt
     7501 aattggccgc ccagccaatc aagcagataa ggcaaaaggc caattacttt taacagctat
     7561 ttcctcgatg aacttaggaa caggaactaa tggaacccaa ctgctggagc aattaaaaca
     7621 aaaattagga ttcgatttta acgtacaaac gacaaccaat tttaatcagc aaaccaataa
     7681 aatcagtgaa tcaaccggcg ttgtggttgg aaaatctctt tcggatcgaa tttatttaag
     7741 ttataacgtc ggtttatctc aaaccgatcc taacgtatta accttaaaat acatactaaa
     7801 taaattttta agcattcagg taagcagcag tgattcaggt aatggcgtcg atgtcctgta
     7861 tactaaaagc tcgtcatcgc cgaaaaaaac aaagcctgac aaataaaaca ttaatccata
     7921 ttgtctaagg atgtaataaa tgaatgaata taatttgcct ttgaggttat ctcgtttaag
     7981 aaaaaatgct atgtcgagag cattagtaag agagaccagg ctgcacgcac aacaactgat
     8041 tgctccattg tttattagtg aatatttaac tgaaccaaaa gaaatcggcg ctatgccagg
     8101 ccaatttcaa ctcggcctca attgtatccc tgaagaaatc gaaattttat caaaatcagg
     8161 catccctgca gtcatcttat tcggtatccc taagcataag gatgcttatg gcagtgaatc
     8221 atttaatagt aatggaatca ttcaacaggc tataaaaaaa ataaaatctg ttaatagtga
     8281 catgttagtt atcaccgatc tttgcttttg cgaatatacc gatcatggtc attgcggggt
     8341 tctgaatggg actcaaatta atattgctgc cactttagag ttgttaggaa aacaggcggt
     8401 aagtcatgct gaagcaggtg ctgactgggt agcacccagt ggcatgacag acggaatggt
     8461 tttagctata cgccaagccc tggatcatgc ttcatttcat gaaattccta ttttaagtta
     8521 tagtgccaaa tattgctcgt gcctttatgg gccttttaga gaggcagcgc agggtgcacc
     8581 acagtttggc gataggaaag cgtatcaaat ggatccggca aatagtgagg aagctgtaag
     8641 ggaaacccga ttagatctgg aagaaggcgc agatatgatt atggttaaac cagccggttt
     8701 ttatcttgat attatttata aacttaaaca acattttgct gatgtaccgc tttgtgccta
     8761 tcaggtcagc ggtgaatatt cgatgataaa aaatgcagca aaaaataatc taatcaatga
     8821 agaacaagca atgactgaaa gtctcattgc gattaaacgt gctggcgctg attttattat
     8881 ttcttatttt gctaaaggca tggctgagtt attaaactct caaaatttta tttaattatg
     8941 agtcaaataa a
//
LOCUS       DACVWI010000119         8881 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.119, whole genome shotgun sequence.
ACCESSION   DACVWI010000119 DACVWI010000000
VERSION     DACVWI010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8881
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.119"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            30..1646
                     /gene="legK2"
                     /locus_tag="JBH85_10330"
     CDS             30..1646
                     /gene="legK2"
                     /locus_tag="JBH85_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegK2"
                     /protein_id="HAU0946597.1"
                     /translation="MVYYINLKEQPLHQDKEILTQLIKQYLLSGSSQSALFANHPYTL
                     NDEDGNEIEFLLSHDIYKNQREDGITEFLILNGSQIGRGTKGVVIQSNHAMYLIDDEL
                     VIFPKENVLKVLYQNFINAEELIKQESVNYSILSGNSTAELVNLQGGNQGFFMQKEEG
                     YALEELLEDIDSLQKLTFSDKMELAISFLTELENLHNKGYAHGDLTFKNILYNEKNNQ
                     LKIIDAGEMKVADERFWAQDISIAIEMISLLFTTNETNQFKASRYWSDEPTVRRIVNP
                     NPVEAKLNRILNSEYRCVSDLKLAIERNYNEYLNNSNLVLKKNVELESEALGLQAYKN
                     QMSKQQLLGEIQGFKENYWNMKDLLTLTNRHHLRVFLEYLDNICSAFKDDKTDEKSAR
                     AAYDFLNAQINKLFEDNSKNSKPSFESFSEDVQRFLIHIDTYLMKNPSACSNSIASTI
                     QLLKQLDNKKSFNPEQSFKDFCSYKEITIQLLLKPFETPVAEMASAPAIASDLIEKQS
                     DTKRKLQEMKSSANQDKQPIFTPSLMRGPS"
     gene            1972..3318
                     /locus_tag="JBH85_10335"
     CDS             1972..3318
                     /locus_tag="JBH85_10335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HAU0946598.1"
                     /translation="MKIDRFFELSFMEYHRVWRFSYGLVLLLLYASLVSAGNALTLKE
                     VTQIALANNKDLKAARYNVSIAKARLLQAGFWPNPSLNLSNNDDRLFTDEGEYSRSAG
                     FSQAFPISGRIAKQKTVARLDVLKAVAEIREAERQLSAKVASAFYTAVLTERRIQQVN
                     YLLRINRELVDVIHNRYHAAEISKLDDNAARIEYLRIVQEKHLLHSLSISQYATLNQL
                     MGREANSSLSLKMDFAAAKKLPALDVLKTQALKNRPDRQSIALSIERANADRRLAKAE
                     RFADWTVGLGIQQDKIVVEEGPPQPADRTLGVTLSVPLPLLNRNQGRILEASHTGTQA
                     MMSLRALDLSIATEIASNYEQLKALRKSLEETQRVSLQLTIENVKLARDSYENGQISF
                     LNVLQVQKQQNDLQTTYLNTLEKFLQVYVALCTAIGPGKTDGFCSYLEYQSNGDSK"
     gene            3315..4283
                     /locus_tag="JBH85_10340"
     CDS             3315..4283
                     /locus_tag="JBH85_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HAU0946599.1"
                     /translation="MRLQLKIRMMIMTVFFLGLLSPIQVSFAHGGNIEVSEGGTKGPV
                     HLTPEQARMLDIKVVQATHRPMAQLLGLNGQIQLLPDAQADVSIRISGSVTAIDVNLG
                     DSVKTGQRLATVQSRLVGNPPPSVAVNAPIAGIIDARNINLGQAVEPNTVLFHISNRD
                     KLLVIAQVYEEDLGKVKVGQEVNVHVLSYPKQTFPGQVTLIEPNLDPLTRTVNVRITL
                     DNKEGLLKPGMFVRANVILSHNKAALVVPNAALLQADNEQFVFVQNGGTYKRVDVKVG
                     AVEDDYSEIIDGLVPGDLVVTQGNRELYTLWLSGGRKLQSGQEEHH"
     gene            4284..7484
                     /locus_tag="JBH85_10345"
     CDS             4284..7484
                     /locus_tag="JBH85_10345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HAU0946600.1"
                     /translation="MFTRLIAWSLHNRLLILALTIILCLLGGYTLKQMPVDVFPEFAP
                     PQVVVQTQAPGMATQDVETLITYPLESAINGTPGVASVRSKTSVGLSTITVVFDDKTD
                     IYLNRQLVNERIQQVINRLPPGVSSPVMLPVTSAVGWLLKYALVSHTASPETLRTISD
                     WTIRPRLLALGGVASVVSLGGEVKQYQVQLDPKRMLAYGITVEEVRQALATGNQNVPG
                     AFVHQGGTEFVVSTIGRIKTLDDIKKTLIVVRKGVPVTVNNVATVAFGGEIKRGDASF
                     NAENAVIGTVSKIYGADTLTTTRKVEQALADIKKSLPAGVELNTEVFRQANFIESAIH
                     NLTRALIEGAVIVIAVLFLFLMNWRASFITFLSMPVSFIAGILVLHYFGFGINSMTLG
                     GMAIAIGEVVDDGIITVENVVHRLRLNRLAEKPLPTIEIVFDAVLEIRSSVVYATIII
                     SLVFLPIFFLSGIPERIFSPLAIAYIASVIGSLVVSITMVPALCYLLLVRKTEKNQDA
                     KVEVHALSEDERYHYAQEETVKQTQTETRFVIWLKKHFLTGLNWSLAHCKTVLVISIA
                     AFIFALSLLPFFGTSFLPEFHEGNFIIVMSTLPGTSLDESMRLGKQVSKTLLKYPQVI
                     SIAQRAGRSELDEDALPPNISEFDVHLNFGKDKTMSPDELLQSIRADLANIPGALFNV
                     GQFIAHRMDEVLSGVRAQVAVKLFGDNLATLNELGESVESILKTVPGVVDINKEQQIN
                     VPQLVIKIDREKAARYGVNIGQISEDIQILLNGVTVSSILEGQRTFDLYLRIGETERD
                     SVKAIQNMLIDAHGAANNQETKIPLRAVADIQLEPQPFAINRENVQRVLVIGFNVQGK
                     DLGSVIQEVQHQIKEKISLPGGYFVQYGGQFESQQQASRVIVLFGALAIFIMLVLLHK
                     AFGTFWEALLVMFNLPLALIGGVVSLFLASGDMSVAAMIGFITLFGIAARNGIILVSH
                     YNQLRSLGRGREQVVIQGTLDRLVPVLMTAATAALALIPLLWGSPAGKELQRPLAQVL
                     LGGLLTSTVLNMFVVPTVYNAFEIWHEKRKQSKESS"
     gene            complement(7586..8854)
                     /locus_tag="JBH85_10350"
     CDS             complement(7586..8854)
                     /locus_tag="JBH85_10350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946601.1"
                     /translation="MIYCMENKKKRVVVATAGTFLEWAEFTYYAYIANIISGSFFPKL
                     GNHLGLIATFSVFALSYFFRPLGALFFGYLGDKMGRRVALQSSIMLMGLSSLFIGCLP
                     AYNSIGILAPILLLIFRCVQGFAVSGEFNGSAIYLIEHDSEKPCQAGSWTGFASALGM
                     MFGGLMSTLIYLPHMPEWAWRIPFLLGTLSCFCAMYFRKNLRESPPYLTISKEKPSNP
                     LKILFDDYKKQLIKSVLLVAALGIYIYIMNVYYASHLAKYTTLSDAQTKFVVTLGQGL
                     VVLFIVLTGMYADRTDERHIIKIGLWGYFIAAPIAYLAPQTNSFALILLSQIPYAICN
                     ALVGTPIFKLLNDFFPTQIRYSGVSIAWGVSMAIFGGTAPLVANYLQYSFKLATAPIF
                     YILLSASVALLVLHDKKNYKIAPIKLRSDN"
BASE COUNT         2725 a         1613 c         1874 g         2669 t
ORIGIN      
        1 tgtagataat tggcttgtag gagagcatta tggtttatta cataaatttg aaggaacaac
       61 ctttacatca agataaagaa attttaacgc agttaattaa gcaatattta ttgtctggtt
      121 ccagtcagtc cgcattattt gccaaccatc cttatacgct aaacgatgaa gatggaaatg
      181 aaatagaatt cctcttaagt catgatattt acaaaaatca acgtgaggat ggtattacgg
      241 agtttttaat tttaaatggc tcacagatag ggagaggaac caaaggcgta gtgatacaga
      301 gtaatcatgc tatgtactta atcgatgatg aattggtaat ttttcctaaa gagaatgtac
      361 tgaaagtttt atatcagaac tttatcaatg ccgaggagct aataaaacag gaatctgtca
      421 attattcgat tttatcagga aattcaactg cagaattagt caatttgcaa ggaggaaacc
      481 aaggattttt tatgcaaaaa gaagaaggat atgccttgga agaacttctt gaggatatag
      541 actcgcttca aaaattgaca ttttcagaca aaatggagtt agccatttca tttttaactg
      601 agttggaaaa tctgcataac aaaggctacg cccatggcga tttaactttc aaaaatattt
      661 tatataacga aaaaaataat caattaaaaa ttattgatgc aggagaaatg aaagtagcag
      721 atgaacgctt ttgggcacag gatatttcaa ttgccataga aatgatatca ctcttgttta
      781 caactaatga aacaaatcaa tttaaggcat cacgctattg gtctgatgaa cctacagtca
      841 ggcgaatagt taaccccaac ccagtagaag caaagttaaa tagaattttg aacagtgaat
      901 atcgttgtgt ttcagattta aagttagcta ttgaaaggaa ttacaatgaa tatctaaata
      961 attcgaatct ggttttgaaa aaaaacgttg aactagaaag tgaagctttg ggtttacaag
     1021 catacaaaaa tcaaatgagc aaacaacagt tgttgggaga aattcaagga tttaaagaaa
     1081 attattggaa tatgaaagat ttgttgacct tgacaaatcg acatcatctt agggtatttt
     1141 tggagtattt agataatatc tgttccgcat ttaaagatga taaaactgat gaaaagtcgg
     1201 ccagagcggc ctatgatttt ctaaacgcac aaatcaataa attattcgaa gataattcaa
     1261 aaaactcaaa accaagtttt gaaagtttct cagaagatgt tcagcgattt ttaattcata
     1321 ttgataccta tttaatgaaa aatccctctg cttgctctaa ttccatagct tccaccattc
     1381 agttattgaa acagttggat aataaaaaga gttttaatcc tgagcaatct tttaaggatt
     1441 tctgttcata taaagaaatt acgattcaac tgttattaaa gccatttgaa acaccagtgg
     1501 ctgaaatggc tagtgcgcca gctatagcat cagatttaat tgaaaagcaa tctgacacca
     1561 aaagaaaact tcaagaaatg aaatcttctg caaatcaaga taagcaacct atatttaccc
     1621 cttcattgat gcgaggccca agctaaaaaa tgtcactgaa gtgttagagc agcctgtcat
     1681 ctattatttc actgctcttg tgtaattaca tttgctggga gatactaaca ggacttacga
     1741 aaaatcccaa tctctatgtt aaaaaatgtt tttaatttgg tcatttggtt tatctaaact
     1801 ccttgattaa aaacattttc tgcctcgacc ttggggtttt tcgtaagtcc tgaataaatc
     1861 atataacaat aaaaagaagg tattaattga tgacttactt tcgaataaaa cacagtccat
     1921 tactcttgat gtctgcacct gccacagatt attttttcga ttccatgttg actgaagata
     1981 gatagatttt ttgagctatc gtttatggaa tatcatcgtg tttggcggtt ttcttatgga
     2041 ttagtcctgc tactgctgta tgcctctctg gtatcggctg ggaacgcttt gactcttaaa
     2101 gaagtaaccc aaattgcttt agcaaacaat aaggatttaa aagccgcccg ttacaatgta
     2161 tctatcgcaa aagcccggtt gctacaagca ggcttttggc ctaatccaag cttgaatctt
     2221 tcaaataatg acgatcgttt attcactgat gaaggagagt attcgcgcag tgctggcttt
     2281 agccaggcat ttcccatatc aggacgtatt gcaaaacaaa agacagtggc tcgtctggat
     2341 gtattgaaag ctgttgcaga aatcagggaa gctgagcgtc aactcagtgc caaagtggct
     2401 agtgcctttt atacagcagt gcttacagag cgtcgcatac agcaagtcaa ttacttatta
     2461 cggattaacc gggaattggt tgatgttatc cataatcgtt atcatgctgc agagatttca
     2521 aaactggatg acaatgcagc gcgcattgag tatttgcgta ttgttcaaga aaaacatctt
     2581 ttgcacagtc tcagtattag tcaatatgcg acactaaatc aattaatggg acgtgaagcc
     2641 aactcttctt tatcacttaa aatggatttt gccgctgcaa aaaaactccc ggcattagat
     2701 gttctaaaaa cacaggcgct taaaaatcgc cctgatcggc aatctattgc gttatcgatt
     2761 gagcgtgcca atgctgatcg ccgtttggca aaagccgagc gctttgcaga ttggacagta
     2821 ggccttggta ttcagcagga taaaattgtg gtggaagaag gcccccctca accagccgat
     2881 cgtactttgg gcgtcacact gtctgttcct ctccctcttt taaatcgaaa tcaagggcga
     2941 attttagaag caagtcatac aggtactcag gcgatgatgt cattacgtgc tctcgattta
     3001 agtattgcaa cggagatagc cagtaattat gagcaactca aagcattacg taagagtctt
     3061 gaggaaacac aacgtgtttc tcttcaatta actattgaaa atgtaaaatt ggctcgtgat
     3121 tcttatgaaa atgggcaaat ttctttttta aatgtgctac aagtgcaaaa acaacaaaac
     3181 gatttgcaaa ccacttatct caatacgtta gaaaaatttt tacaagtcta tgtggccttg
     3241 tgtacagcta ttggtcctgg aaaaacagat gggttttgct cttatttaga gtatcaaagc
     3301 aacggtgata gcaaatgaga ttgcagctta aaattagaat gatgatcatg actgtttttt
     3361 ttcttggctt gctttccccc atccaagtga gttttgcaca cggaggaaac atagaagtaa
     3421 gtgaaggagg caccaagggg ccggttcatt tgactccgga acaagccagg atgcttgata
     3481 tcaaagttgt ccaggcaacc catcgtccta tggcacaatt gctgggttta aatggtcaaa
     3541 ttcaattatt acctgatgct caagctgatg tcagcattcg tattagtggc agtgtgacag
     3601 cgattgatgt gaatttgggg gacagtgtca agacaggaca gcgcttggct acagtgcaat
     3661 cacgattggt gggaaatcct ccaccgagcg ttgctgtcaa tgccccaatt gctggtatca
     3721 ttgatgcaag gaacatcaat ttaggtcagg ctgtcgagcc aaacaccgtt ctttttcata
     3781 tcagtaatcg cgataaatta ttagtcatag ctcaagtgta tgaagaagat ttaggtaaag
     3841 tgaaggtagg gcaagaagtg aatgttcatg tcttaagtta tcccaaacag acattcccgg
     3901 ggcaagtcac tttaattgaa cccaatcttg atccattgac ccgtacagtt aatgtacgaa
     3961 ttactttgga taacaaggag gggctactga aacccggaat gtttgtgcgg gctaatgtga
     4021 ttttaagtca taataaggca gcactcgttg tgccgaatgc cgctctttta caagcagata
     4081 acgagcaatt tgtttttgtg caaaatggag gcacttacaa acgagtcgat gttaaagtag
     4141 gcgctgtgga ggatgactac tcagaaatta ttgatggtct agttcctggc gatctcgttg
     4201 ttactcaggg aaatcgcgag ctttatacac tttggttgag tggaggccgc aaactgcaat
     4261 cagggcaaga ggagcatcat taaatgttta ctcgccttat tgcctggtct ttgcataatc
     4321 gtctcttgat tttggcatta acgattattc tttgtttgct gggtggttat actctaaagc
     4381 aaatgccggt agatgttttt cctgaatttg cccctcctca agttgtagtt caaacccaag
     4441 cgccaggcat ggcaacccaa gatgtggaaa cattaatcac ttatcctttg gaaagtgcca
     4501 tcaatgggac tccaggggta gccagtgttc gctcaaaaac ctccgtcgga ttatcaacaa
     4561 ttaccgtggt atttgatgat aaaacggata tctatctcaa tcgtcaactg gttaatgagc
     4621 gcattcaaca ggtaatcaac cgtctccctc caggtgtttc ctcacctgtg atgctgccag
     4681 tcacatcggc agtagggtgg ttgcttaaat atgctttggt gagtcacaca gcaagccctg
     4741 aaaccttgcg cactatttct gattggacta ttcgtccacg tctattggct ttaggcggag
     4801 ttgcttcagt agtttcactg ggcggagaag taaagcaata tcaagtacag cttgatccca
     4861 agcgtatgct ggcttatggc atcacagtcg aagaagttcg tcaagcgttg gcaacaggaa
     4921 atcaaaatgt acctggtgct ttcgtacatc aggggggtac ggaatttgtc gtaagtacca
     4981 ttggtcgtat taagacgttg gacgatataa aaaaaacact gattgtagtc cgcaagggag
     5041 ttcctgttac tgttaataat gtagccacag tcgcttttgg cggtgaaatc aaacgcggtg
     5101 atgcttcgtt caatgcagaa aacgctgtca ttggtactgt ttccaaaatt tatggagctg
     5161 atacattaac tacaacacgt aaagtggagc aagctttagc tgatataaaa aaatccttgc
     5221 cggcaggtgt tgaattaaat acagaagtat ttcggcaagc caatttcatt gagtcagcca
     5281 ttcacaacct aaccagggct cttattgagg gagctgttat tgtgattgcc gtgctctttc
     5341 tatttttgat gaattggcga gcttcattta ttacctttct ctctatgccc gtttccttta
     5401 tcgcaggtat cttggtcctt cattattttg gttttggcat taactccatg actttgggcg
     5461 gaatggcgat tgccattggt gaagtggtgg atgatgggat tattactgta gaaaatgtgg
     5521 tacatcgctt aagactgaat cgtttggcag aaaaaccttt gcctacgatt gaaattgttt
     5581 ttgatgcggt tttggaaatt cgcagttcag tagtttatgc gaccattatt attagcctgg
     5641 tgtttttacc catcttcttt ttgtcaggaa ttcccgagcg gatttttagc ccattagcca
     5701 ttgcttatat tgcttccgta ataggctctc ttgtcgtttc tattactatg gtaccagccc
     5761 tatgttatct ccttttggtg cgaaaaactg aaaagaatca ggatgctaaa gtggaggtgc
     5821 atgctttatc cgaagacgaa cgttatcatt acgcacaaga ggaaacggtt aaacagactc
     5881 aaacggaaac gcgttttgtg atttggctaa aaaagcattt tttaaccggt ttaaattggt
     5941 ctttggccca ttgtaaaaca gttttagtca tatcaattgc agcattcatt tttgctttga
     6001 gtttacttcc tttttttgga acctctttct tgccggagtt tcatgagggc aactttatta
     6061 ttgtgatgag tactcttcct ggaacttcat tggatgaatc catgcgtttg ggtaagcaag
     6121 taagtaagac gttattgaaa tatccgcaag taatttctat tgcccaacga gcgggtcgca
     6181 gtgaattgga tgaagatgct ttaccaccga atattagtga attcgatgta catctgaatt
     6241 ttggtaaaga taaaaccatg tctcctgatg aattgttaca atctattcga gctgatttag
     6301 cgaatattcc aggagcgtta tttaatgtgg ggcagtttat tgcccatcgc atggatgaag
     6361 tgttatcagg agtcagagcg caagtagccg tgaaactctt tggtgataat cttgctaccc
     6421 ttaatgaatt gggtgaatcg gtagaatcca ttttaaaaac cgtcccagga gtagtagata
     6481 ttaataaaga gcagcaaatc aatgtacctc agctggtcat taaaattgat agggagaaag
     6541 cggctcgcta tggtgtcaat attggtcaaa tttccgagga cattcaaatc cttcttaatg
     6601 gtgtgacggt atccagtatt cttgaaggcc agaggacgtt tgatttgtat ttgcgtattg
     6661 gtgaaacaga acgggatagc gttaaagcca ttcaaaatat gctgattgat gcccatggtg
     6721 cggccaataa tcaagaaaca aaaatccctt tgcgtgcggt ggctgatatt cagttagagc
     6781 ctcaaccgtt tgcaattaat cgagaaaacg tgcaacgtgt tttggttatc ggttttaatg
     6841 tgcaagggaa agatttgggt agtgtgattc aagaagtaca acatcagatt aaagaaaaga
     6901 tttcgttacc tggtggttat ttcgttcaat atggtggcca atttgaaagt caacaacaag
     6961 catctcgtgt gattgttctt tttggtgcat tggcaatttt tatcatgtta gtacttcttc
     7021 ataaggcttt tggcacattt tgggaagcct tgttggttat gttcaactta cctttggcat
     7081 taataggtgg agtggtctct ttattccttg ccagcggtga tatgagtgtg gctgccatga
     7141 ttgggtttat tactctattt ggaattgcgg cacgtaatgg gatcatttta gtgagccact
     7201 ataatcaatt acgttctctt ggccggggac gtgagcaagt agtgatccag ggaactctcg
     7261 atcgcctggt acccgtatta atgacagcag cgacagcagc tctggcctta atacctctct
     7321 tgtggggatc tcctgctggt aaagaacttc aacgtccttt ggcacaagtg ttattgggag
     7381 gattattaac ttcaacggtt ttaaatatgt ttgttgtgcc tacagtctat aatgcctttg
     7441 aaatctggca cgaaaagaga aaacaatcaa aagaaagttc ttaagaagta ccatgatgaa
     7501 tcgaataatt gaacctatta agaagtaatc gtcaccaatt gcctggatgc ttgcacagac
     7561 atgtgcttgc aaaggctaat tttattcaat tatctgatct taattttatc ggggctatct
     7621 tgtaattctt tttatcatgt aaaacgagca aggcaacact ggccgataaa agtatataga
     7681 atattggtgc agttgctaat ttgaatgaat attgtaaata attggcgacc aatggcgctg
     7741 ttcctccaaa aatagccatg cttactcccc aggcaataga aacaccactg tatcgaatct
     7801 gagttggaaa aaaatcattc aatagcttaa aaattggtgt accgaccaga gcattgcaga
     7861 ttgcataggg aatttgtgat aagagaatta atgcaaaaga gttggtttga ggggccaggt
     7921 aagctatagg agctgcaata aaataccccc ataaaccgat ttttataata tgtctttcgt
     7981 cagttctatc cgcatacatt cctgttaaaa caatgaatag gacaaccaat ccttgcccta
     8041 gggtaacaac gaatttggtt tgggcatctg acaaagtggt gtattttgcc aaatgagaag
     8101 cataataaac attcataatg tagatataaa tacctaatgc cgctactaat aataccgatt
     8161 taattaattg ttttttataa tcgtcaaata aaattttcag tggatttgat ggtttttctt
     8221 tacttattgt gaggtagggt ggtgattccc tcaaattttt acgaaaatac atcgcacaaa
     8281 agcaggataa ggttcctaac agaaaaggga tacgccatgc ccactctggc atgtgaggta
     8341 aataaattaa agtagacatc aatccgccaa acatcatacc caatgcggaa gcaaatccag
     8401 tccagctacc ggcctggcat ggtttttctg agtcgtgttc aatcagatag atagcgctac
     8461 cattaaattc accagatacg gcaaagcctt gtacacaacg aaagatgagc aagagaattg
     8521 gagccaagat accaatacta ttgtatgcag gaagacaacc aatgaacaga gaggataacc
     8581 ccatcagcat aatagaagat tgcagggcaa ctcgacgccc catcttgtct ccaagatatc
     8641 caaaaaagag ggctcctaac ggacgaaaaa agtaactgag cgcgaaaaca gaaaaggttg
     8701 ctatcaaacc aagatgattt cccaattttg gaaaaaacga tcctgagata atattggcga
     8761 tataggcgta ataagtaaac tcagcccatt ccagaaaagt tccggcggtt gcgacaacga
     8821 cccttttctt cttattttcc atacaataaa tcaatagaat attaaagtga tgtagaggga
     8881 t
//
LOCUS       DACVWI010000120         8714 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.120, whole genome shotgun sequence.
ACCESSION   DACVWI010000120 DACVWI010000000
VERSION     DACVWI010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8714)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8714)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8714
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.120"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..2919
                     /gene="sdeB"
                     /locus_tag="JBH85_10355"
     CDS             <1..2919
                     /gene="sdeB"
                     /locus_tag="JBH85_10355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010947867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdeB"
                     /protein_id="HAU0946602.1"
                     /translation="RQAKLPLREGVFDRLSHRFSLETSDNKISPERRDFLNQHVIPVL
                     QECHIALRTNNMEMMQKALAKFPTDKQWSAFKSGEAVRAKAQMDVLKQQIEKKIMLQT
                     QIIPALTECGEALDKQNVTEALQALNKLPAEKEIGKAKGIGQELRGQIVGVKQELTGN
                     LESLQRAVTTPVVKDAEKMRVRYETLLTDVTKRVTDFEKIKPANLDGYNKAIADLNNI
                     QQELNLLRNEKIRMHTDKDKAVDFSDIEALEKRLKEAQPNLYPSLVEGTTKGIQELEK
                     IPKSISFDDVKSMTSKINGYLETLEFIRNERVKKHGESTEPLDMSDLDKLKNQLQGVS
                     QHLAQILLNGAKNSLDKIKDPVTLEKEGQYIKRCLDHFAELEKTLDSSVKGMKQKEDF
                     NTYKNSLMEKQEKAYPEMLQLQYKSEALITQLRNLCNIHHDNLAKTREEQQQLLNKTG
                     GILGGFFSQITTAISQAESKKANEFARFKTELNNDKSDVSQLIQFLVKKKPSELEENL
                     GISKENAEQLHGLLKQLDAKATPIDKLQENTRLIDEISTKMGSKPVSPEHVAATKARE
                     YYQFLLYGATQKIGNFEKIKPIDPESYKKAMSDLNNMQEALQFLRSEKSRIHDGKEKA
                     VEFSDIEALEKRVQNAQPKLLTALLDKTTREISALVKIPRKLTFEDIKSMTTKLNSYL
                     ETLELIRNERIKQHGKSPELLDMSDLDSLKGQLQTFNQNLTGMILNATKDGLDRINDR
                     ANFKEGEPYVKACLDLLTELEKTLDSSVKGMKQKEDISACRNSLLDKQEKANSGMLDL
                     QSKSKDLVTQLRDICKIHHGNLAEARRTRLHSLDNQEGGLLGGLWSVTNKLGVTTDTV
                     GIERMQIKMKEQALARFKTELNNDKYDTNQVIAFLANKKPSELEEGLGISKENAEELH
                     GLLSKLTSKMTSKIEIEENTQLIDEISTKIGTEPVKLESTHTVDEDERDTYHRESGYF
                     "
     gene            3298..7797
                     /gene="sdeA"
                     /locus_tag="JBH85_10360"
     CDS             3298..7797
                     /gene="sdeA"
                     /locus_tag="JBH85_10360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T4SS effector NAD-dependent ubiquitin ligase
                     SdeA"
                     /protein_id="HAU0946603.1"
                     /translation="MPKYVEGVELTQEGMHAIFARMGYGDITSGSIYNGVPTIDTGAL
                     NRQGFMPVLTGVGPHRDSGHWIMLIKGPGNQYYLFDPLGKTSGEGYQNILAAQLPMGS
                     TLSVIPNGSGLNMGLCGYWVASAGLRAHQALNQHNPPTLLNVGQTITNEMRNELDHDG
                     YRKITGWLRAVADEFPEGDPQLDGKALRENTEKDLKIEIPTLVLPGKDTSPKEMSVKP
                     TAPQDKSVPVWNGFSLYTDDTVKAAAQYAYDNYLGKPYTGSVESAPANFGGRMVYRQH
                     HGLSHTLRTMAYAELIVEEARKAKLRGETLGKFKDGRTIADVTPQELKKIMIAQAFFV
                     AGRDDEASDAKNYQKYHEQSRDAFLKYVKDNESTLIPDVFKDQEDVNFYARVIEDKSH
                     DWESTPAHVLINQGHMVDLVRVKQPPESFLQRYFSSMQRWIGSQATEAVFGIQRQFFH
                     ATYEVVAGFDSDNKEPHLVVSGLGRYVIGEDGQPIREAPKKGQKEGDLKVFPQTYKLK
                     ENERLMRVDEFLKLPEIQNTFPGSGKHLQGGMPGMNEMDYWNRLNSLNRARCENDVDF
                     CLKQLQTAHDKAKIEPIKQAFQSSKGKERRQPNVDEIAAARIIQQILANPDCIHDDHV
                     LINGQKLEQQFFRDLLAKCEMAVVGSLLNDTDIGNIDTLMRHEKDTEFHSTNPEAVPV
                     KIGEYWINDQRINNSSGNITQKKHDLIFLMQNDAWYFSRVNAIAQNRDKGSTFKEVLI
                     TTLMTPLTSKALVDTSQAKPPTRLFRGLNLSEEFTKGLIDQANAMIANTTERLFTDHS
                     PEAFKQIKLNDLSKMSGRTNASTTTEIKLVKETWDSNVIFEMLDPDGLLHSKQVGRHG
                     EGTESEFSVYLPEDVALVPVKVTLDGKTQKGENRYVFTFVAVKSPDFTPRHESGYAVE
                     PFLRMQAAKLAEVKSSIEKAQRAPDLETIFNLQNEVEAVQYSHLSTGYKNFLKNTVGP
                     VLENSLSGLMESDTDTLSKALAAFPSDTQWSAFNFEEARQAKRQMDAIKQMVGNKVVL
                     DALTQCQDALEKQNIAGALDALKKIPSEKEMGTIRRELREQIQSARQELESLQRAVVT
                     PVVTDEKKVRERYDALIENTSKKITELETGKLPNLDAVKKGISNLSNLKQEVTVLRNE
                     KIRMHVGTDKVDFSDVEKLEQQIQVIDTKLADAYLLEVTKQISALDNTKPKNQTELKT
                     KIAAFLDRTTDIEMLRNERIKKHGSSKDPLDLSDLDKLSGSLQRINQSLVSDLITTIR
                     VSINQMEAKTFHEQEKEIQQNFELLAKLEKTLDKSKTSEKLREDIPKLNDLLVAKQKA
                     YPQMVQMQLKSEVFVTQLREVCQANHDDLDKTRNARLRELDRLDREAGITRMVGNLIW
                     GLTNKVGLTTDERLDIRTKQQSLARFKNELFNDKIDTDQLISNLARKRPSELQEGLGI
                     STDNAMELHLLLTELAGKTTSPDELEERMKAIDDISTKIGREPEHLKFVMVEEDESNK
                     KTIGF"
     gene            8211..>8714
                     /locus_tag="JBH85_10365"
     CDS             8211..>8714
                     /locus_tag="JBH85_10365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0946604.1"
                     /translation="MVMSLSSVKKVYNIYSSFYDVLFGSIFHQGRSLCTNKVNKNAGL
                     NASVLELGVGTGLSLPFYRPDLNITGIDISEKMLEKAEKRIVKKKLTTHIDLKIMDAA
                     NLEFPDNHFDFVVAMYVASVVPDIDTFLKEISRVCKPSGEIIFVNHFASEKPILRFFE
                     KQLSHIDN"
BASE COUNT         3106 a         1637 c         1707 g         2264 t
ORIGIN      
        1 aggcaagcca aattgcctct tagagaaggg gtttttgata gactctctca tcgtttttct
       61 ctggaaacca gtgataacaa aatatctccg gaacgcagag attttcttaa ccaacacgtc
      121 atccctgtat tacaggaatg tcatattgct cttagaacaa acaatatgga gatgatgcaa
      181 aaagccttgg caaaattccc tactgataaa caatggtctg cttttaaatc aggagaagca
      241 gtcagagcca aagctcaaat ggatgtatta aagcaacaga tcgaaaagaa aatcatgctg
      301 caaactcaaa ttatcccagc tctcacggaa tgtggtgaag cactggataa acaaaatgtc
      361 acagaagcat tacaagcgct taataaactg cctgcagaaa aggaaatagg taaagccaag
      421 gggataggac aagagttaag agggcaaatt gtaggtgtta agcaagagct gactggaaat
      481 cttgaatcct tgcaacgcgc agtcactacc cctgttgtaa aagatgctga gaaaatgaga
      541 gtacggtatg aaacgcttct cacagacgtg accaaacgag tcaccgactt tgaaaaaatc
      601 aaaccggcca atcttgacgg ttataataag gccattgccg atttaaataa catacaacaa
      661 gaattaaacc ttttgcgcaa tgaaaaaatt cgcatgcata ctgacaaaga taaagcagtg
      721 gacttttctg acatagaggc cttggaaaag agattaaaag aagcacagcc caatttatat
      781 ccctcgcttg tggaaggaac aacaaaaggt attcaagaac ttgaaaaaat acccaagtca
      841 atcagttttg acgatgttaa atcaatgaca tccaagatta atggctacct ggaaaccttg
      901 gaattcattc gtaatgaaag agttaaaaag catggtgaat ccactgagcc actggatatg
      961 tctgatctgg ataaattaaa aaatcaacta caaggcgtga gtcagcattt agcccaaatt
     1021 ttattaaatg gagctaaaaa ctcactcgat aaaatcaagg atccggttac actcgaaaaa
     1081 gaaggacaat atataaaacg ctgccttgac cattttgctg aacttgaaaa aactctggat
     1141 agttcggtaa aaggaatgaa acaaaaagaa gactttaaca cctataaaaa ctctctaatg
     1201 gagaagcagg aaaaagccta tccagaaatg ttgcaattgc aatacaagag tgaagcattg
     1261 attacacaat tacgtaatct atgcaatatt catcatgata atttggccaa aacgagagag
     1321 gaacaacaac agctactgaa caagaccgga ggaatattag gcggtttctt tagccagata
     1381 acgactgcta taagtcaagc cgagtcaaag aaagcaaatg aatttgcaag atttaaaact
     1441 gaattaaata atgacaaaag tgatgtgagt caacttattc aatttctggt aaagaaaaaa
     1501 ccatccgaat tggaagaaaa tttgggcata tcgaaagaaa atgctgagca attacatgga
     1561 ctgttaaagc aactagacgc aaaagctact ccaatagata aattgcagga aaacacaaga
     1621 ttaattgatg aaatatcaac caaaatgggt agtaaacccg tctcgccaga acatgttgcc
     1681 gcaacaaaag cgagagaata ctatcaattt cttctatatg gagcgacaca aaaaatcggt
     1741 aactttgaaa agatcaaacc tatcgatccc gaaagctata aaaaggctat gtcagactta
     1801 aataacatgc aagaagcatt acaattccta cgtagtgaaa aatcccgaat acatgatggc
     1861 aaagaaaaag cagtggaatt ctctgacata gaagccttgg aaaaacgagt acaaaatgct
     1921 caacctaaat tactgacagc actcctggat aaaacaacca gagaaatctc agcattagta
     1981 aaaataccca ggaaattgac ctttgaagat ataaaatcaa tgacaaccaa gcttaacagt
     2041 tacctggaaa ccctggagtt gattcgtaat gaaagaatca aacaacacgg taaatcccct
     2101 gaacttctgg atatgtccga tttggatagt ttaaaaggtc aattgcaaac ctttaatcaa
     2161 aatttgactg gcatgatact aaatgctact aaagatggtc tagatagaat caatgacagg
     2221 gctaacttta aggaaggaga accttacgta aaagcatgtc ttgatctttt aacagaactt
     2281 gaaaaaacac tggatagttc ggtaaaagga atgaaacaaa aagaagacat tagcgcctgt
     2341 agaaattctc tccttgataa acaggaaaaa gccaattccg gaatgctgga tttgcaatcc
     2401 aagagtaaag atctggttac ccaattacgt gatatctgta aaattcatca cggtaattta
     2461 gctgaagcaa gaaggaccag gcttcactca cttgataatc aggaaggcgg attattaggg
     2521 ggattatggt ctgttactaa caaattaggt gttaccacag acacagtagg tatcgagagg
     2581 atgcaaataa aaatgaagga gcaagcactg gcaagattta aaacagaatt gaataatgac
     2641 aaatacgata cgaatcaagt cattgccttt ttagcaaata aaaaaccatc agagctggaa
     2701 gaaggtttag gcatatcgaa agaaaatgcc gaagaattac atggactgtt aagtaaactc
     2761 actagtaaaa tgacttcgaa aatcgaaatt gaagaaaata cacagttaat tgatgaaatt
     2821 tcaactaaaa taggtaccga acccgtaaaa ctcgagtcga ctcacacagt agatgaagat
     2881 gagcgtgata cctatcaccg agaaagtggt tacttttaag tacttgttcg atggtgaaat
     2941 gattcagtga atgatcgtaa gcgctagcag atgagaaatg aaagacatta tatgaattag
     3001 tttctcattc tgttaatcgc tttaaaacat gtcacttcta atgaagaaac actataaaga
     3061 tagggtcaac ctcttttccg ctcaaattca ccttatttta ctgccctgct ctttatacaa
     3121 gaggaacacc tcccaatttt ttttcaaata tcaaattcaa aaaaaaatga atattttttt
     3181 tacatttaat actttcttaa tactacactt ctataataaa catacaattt gaaatattta
     3241 tattcatcta atgtgcacat ttgcacgttt tagaatatca gtttgggaga agccataatg
     3301 cctaagtatg tcgaaggggt agaactaact caagaaggta tgcatgctat ttttgcacgc
     3361 atggggtatg gagatattac cagcggtagc atatacaacg gagtgccaac tattgacaca
     3421 ggtgcgctaa acaggcaagg ttttatgccc gtgttaaccg gggtaggacc acacagagac
     3481 tccggccact ggattatgtt aatcaaaggt cctggcaacc aatactacct ctttgaccca
     3541 ttaggcaaaa catcaggtga aggctatcaa aatattttag cagcccaatt accaatgggg
     3601 tctacccttt ctgttattcc caatggttcc ggtttgaata tgggattatg cggctactgg
     3661 gtcgcctctg ctggtttaag agcacaccag gcattaaatc aacataatcc ccctactttg
     3721 ttaaatgtgg gacaaaccat taccaatgaa atgcgtaacg aactcgatca tgacggttat
     3781 cgaaaaatta ccggatggtt acgtgctgtt gctgatgaat tccctgaagg tgacccacaa
     3841 ttagatggga aagcattaag agaaaacact gaaaaagatt taaaaataga aattcctaca
     3901 ctggttcttc ctggaaaaga tacctcccct aaagaaatgt ctgttaaacc cactgcacca
     3961 caagataaat ctgtgcctgt ttggaatggg ttttcattat atactgatga taccgttaaa
     4021 gccgcggcac aatacgccta tgacaactat ctgggcaaac cgtataccgg atcagttgaa
     4081 tcagcacctg cgaattttgg cggtcgaatg gtgtacagac aacatcatgg actttcccat
     4141 actttacgga ccatggctta tgcggaattg attgttgaag aagcacgtaa agctaaatta
     4201 cggggtgaaa cattagggaa attcaaagac ggacgtacta ttgctgacgt tacccctcaa
     4261 gaactaaaaa aaatcatgat tgcccaggca ttttttgtag ctggacgtga tgatgaagca
     4321 tccgatgcca agaactacca aaaatatcat gaacaaagcc gggatgcttt cttaaaatat
     4381 gtgaaagaca atgaatccac tttgattcct gatgttttca aagatcagga agatgtcaat
     4441 ttttatgccc gagtgattga agataaaagt catgattggg aatcaacccc agcccatgtg
     4501 ctaattaacc agggccatat ggtcgatttg gtacgggtca agcaaccccc tgaatcattc
     4561 ttacaacgct atttcagttc catgcaacgc tggataggtt cacaggcaac ggaagctgtt
     4621 tttggaatac aaagacagtt tttccatgct acctatgaag tagtcgcagg ttttgactcc
     4681 gataacaaag aacctcattt ggttgtttct ggtttaggtc gttatgtcat cggtgaagat
     4741 ggtcaaccta tccgagaagc tccgaaaaaa ggacagaaag aaggagattt aaaagttttc
     4801 cctcaaactt ataaattaaa agaaaatgag cgtcttatgc gcgtcgatga atttttaaaa
     4861 cttcctgaaa tacaaaatac cttccctggt tctggcaaac atttacaagg tggaatgcca
     4921 ggtatgaatg aaatggatta ttggaatcga ctgaactctt taaacagagc acgatgcgaa
     4981 aacgatgttg atttttgttt gaaacaatta caaacagccc atgacaaggc gaaaattgag
     5041 cctattaaac aagcttttca atccagtaaa gggaaagaaa gaagacaacc taatgtcgat
     5101 gaaattgctg ctgcccgcat cattcagcaa atcttggcca atcctgattg catccatgat
     5161 gatcatgtgc tcatcaatgg ccagaaactg gaacaacaat tcttccgtga cttgttagcg
     5221 aaatgcgaga tggctgttgt aggctcactc ctcaatgaca ccgacatagg aaacattgat
     5281 actttaatgc gacatgaaaa agacactgag tttcattcta ccaatcctga agcagttccg
     5341 gtgaaaattg gagaatattg gattaatgac caaagaatta ataatagtag tggcaacatc
     5401 acccaaaaga aacacgatct aattttcctc atgcaaaatg atgcgtggta ttttagccga
     5461 gtcaatgcca tcgcccaaaa ccgggataaa ggctctactt tcaaggaggt gttgattact
     5521 actttaatga cgcctttgac tagtaaagca ctagtggata cctcgcaagc caagccccct
     5581 acaagactat ttcgtggatt aaacctgtca gaagagttta ccaagggatt aattgatcaa
     5641 gcgaatgcaa tgattgccaa tacgacagag cgtcttttca ccgatcattc accagaagcc
     5701 ttcaaacaaa tcaagttaaa tgatttaagt aaaatgtccg gcagaaccaa tgccagtaca
     5761 accacggaga ttaagcttgt aaaagaaacc tgggactcca atgtcatctt tgaaatgctt
     5821 gacccggatg gtttgctgca ttccaagcaa gtaggacgcc atggcgaagg caccgaaagt
     5881 gaattctccg tttatttgcc ggaggatgtt gccctggtcc cagtcaaggt cacccttgat
     5941 ggtaaaacgc aaaaagggga aaatcgatat gtctttacct ttgttgccgt aaaaagccct
     6001 gactttacac cacgtcatga aagcggctat gcggttgaac cgtttttaag aatgcaagcc
     6061 gcaaagttag ccgaagtcaa aagctctatt gaaaaagccc agagagcacc tgaccttgag
     6121 acaattttca atttacaaaa cgaagtagaa gcagtgcaat actcacactt atcgacgggt
     6181 tacaaaaatt ttctaaaaaa caccgttggt cctgttttag aaaatagtct tagtggactc
     6241 atggagagtg acacggacac tttaagtaaa gcattagcag cattcccatc cgatacacaa
     6301 tggtcagcct tcaattttga agaagcaagg caagccaaaa gacagatgga tgccattaag
     6361 caaatggttg gaaataaagt ggtgcttgac gccttgactc aatgccagga cgcgctggaa
     6421 aagcaaaata tcgctggcgc actggatgct ctcaaaaaaa tcccgtccga aaaagagatg
     6481 ggtacaatta gaagagagct aagagaacaa atccaaagcg ccaggcaaga actggaatca
     6541 ttgcagcgtg ctgttgttac ccctgtagta accgatgaaa agaaagtaag agaacgctat
     6601 gatgccctga tagaaaacac atcgaagaaa attactgaac ttgaaacagg gaaattaccc
     6661 aatcttgatg ctgtcaagaa aggcatatct aacttgagca acctgaaaca agaagtaacc
     6721 gtattacgta atgaaaaaat acggatgcac gttggaactg ataaagttga tttttcagat
     6781 gttgaaaaac tggaacaaca aatacaggtt atcgatacca aattagccga tgcttattta
     6841 cttgaagtaa ccaaacaaat ttcagcgctt gacaatacaa aacccaaaaa tcagactgaa
     6901 ttgaaaacaa aaatagcagc atttcttgac agaaccactg atattgaaat gttgcgtaat
     6961 gagcgaatca aaaaacacgg ttcatcgaaa gatccactgg atctgtctga tttggataaa
     7021 ttaagcggca gcttacagcg cattaatcaa tccctggttt cagatttgat aacaaccatc
     7081 cgtgtgtcca tcaatcaaat ggaagcgaaa acttttcacg aacaggaaaa ggaaatacaa
     7141 caaaatttcg agttactcgc aaaactcgaa aaaacattgg ataagtcaaa gacatcagaa
     7201 aaactaaggg aggatattcc caaacttaat gatttgctgg ttgcaaaaca aaaagcctac
     7261 cctcaaatgg tacaaatgca actcaagagc gaagtcttcg ttacccaatt acgtgaggta
     7321 tgtcaagcta accatgacga tctggataaa acaagaaatg caagattacg agaactggat
     7381 cggctggaca gagaagctgg aataacaaga atggtgggta atctaatctg gggtcttacc
     7441 aacaaagtag gtttaaccac agacgaacga cttgacatca ggactaaaca gcaatcgctt
     7501 gcacgattca aaaatgaatt atttaatgac aagattgata cggatcagct aatctctaat
     7561 ttggcaagga aaagaccttc tgaactgcaa gaaggattgg gaatatctac agacaatgcg
     7621 atggagttac atttactgtt aactgagtta gcgggtaaaa caacttctcc agatgaactg
     7681 gaagaaagaa tgaaagcaat cgatgacatt tccaccaaga taggtagaga gcctgagcat
     7741 ttgaaatttg tcatggttga agaagatgaa tccaataaaa aaactatagg attttaattg
     7801 accttaaccc aaatcgcatg aagttctgaa gtcgggtctt attgacccga ctttttgtta
     7861 tggatttaaa ataaaagaga atatatccat ctactggcaa cgaaatttcg accagtttgc
     7921 ataccattta atttagacct tgattcttct ccctggtagc tacatcgctt ataaaagagt
     7981 cactttgact ttgtaaattc aaaattttta catgagatca ttgacttatt taagacatat
     8041 cttcatcctt tggatcattt cgtattgttg gcgcagatat tactaaagat aactttgaga
     8101 tgaaattacc tcagtttcaa caggagtgaa ctttttcatt acaatatacg aatttataat
     8161 ccctaaaagc aaatggttct atttttcgtt ttgtctttct aaatggagta ttggttatgt
     8221 cgctctcttc agtaaaaaaa gtttataata tttattcttc tttttatgat gtcctttttg
     8281 gatctatctt tcatcaaggc cgctctctat gtactaataa ggttaataaa aatgctggcc
     8341 tgaatgcttc tgttttagag cttggggttg gcacagggtt atctttaccc ttttaccgtc
     8401 cagatttgaa cataactgga atcgatattt cagaaaaaat gttagaaaag gctgaaaaac
     8461 gtatcgtcaa gaaaaaatta acaacccata ttgatttaaa aattatggat gccgctaatt
     8521 tggagtttcc agataaccat tttgattttg ttgttgccat gtatgttgcg tctgttgtcc
     8581 ctgatattga tacttttcta aaagaaatct cacgtgtttg taaaccatca ggcgaaataa
     8641 tatttgtgaa tcattttgct tctgaaaaac ccatcctgcg cttctttgaa aaacaactgt
     8701 cacatattga taat
//
LOCUS       DACVWI010000121         8703 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.121, whole genome shotgun sequence.
ACCESSION   DACVWI010000121 DACVWI010000000
VERSION     DACVWI010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8703
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.121"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            89..1051
                     /locus_tag="JBH85_10370"
     CDS             89..1051
                     /locus_tag="JBH85_10370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HAU0946605.1"
                     /translation="MNFCTLGLAVIETEAQAVFELTQRIDEHFEKACELLLSCKGRIV
                     VTGMGKSGHIANKLASTFSSTGSPAFFMHPGEASHGDLGMITRQDIVVAISNSGNTHE
                     IVTLLPLLKRLEVPLITLTGNKQSTLAKSADVNLDVSIKQEACPLGLAPTTSTTVSLV
                     MGDALAISLLQARGFSAEDFALSHPGGALGKKLLLKIDDLCHTGEQLPLANENATVSD
                     ALIEVTNKKLGMTCVVDNHGYLVGVYTDGDIRRTLTRQFNINTTLIKDVMTKNCRTIS
                     KGMLAAEALAIMQKYSITSLVVVENDNRPYAVLHLHDLLKAGVF"
     gene            1041..1592
                     /gene="kdsC"
                     /locus_tag="JBH85_10375"
     CDS             1041..1592
                     /gene="kdsC"
                     /locus_tag="JBH85_10375"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HAU0946606.1"
                     /translation="MFFNTEIEMNELLEKAKKIKCLICDVDGVLSDGLLHIDNHGNEL
                     KSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKRSAYQHL
                     KKTLGLNDEEFAYIGDDLPDLPLIQQVGLGVAVSNAVPQVLEFADWRTERTGGRGAVR
                     ELCDLILNAQNKAELAITGYLKQ"
     gene            1589..2158
                     /gene="lptC"
                     /locus_tag="JBH85_10380"
     CDS             1589..2158
                     /gene="lptC"
                     /locus_tag="JBH85_10380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HAU0946607.1"
                     /translation="MNITKQAIWLFLTLLILAGSGWYYAHFNQAIINKKTLSNEVDTT
                     ISQLTVKQFNSEGVLINLLTTPQVEYIPNNNLHLLKKPHIIIRQDNQPAWEINSLRAK
                     SFDGGKQITFIEQVVVHQNPGESTRESTLKTEEITYYPKEKKATTSLFVTFEQPGNII
                     QSTGMNAYLDEKRVELLHKARGSYDPAKG"
     gene            2139..2648
                     /gene="lptA"
                     /locus_tag="JBH85_10385"
     CDS             2139..2648
                     /gene="lptA"
                     /locus_tag="JBH85_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HAU0946608.1"
                     /translation="MTQLKVKYIILLLLMLCSISGNALPLDKEKMVQVVSDSADLNQK
                     NHQGVYIGNVEFVQGSTNLRAAKAITQGDAKNQLTLAIAEGSKGKQAHYWTTTAPDKP
                     PFHAYADTIKYYPLKHLIELIGNARIEQGPNSLSAAKISYDTQEQHVLSHSDEKTRTT
                     IIIYPEKKS"
     gene            2645..3370
                     /gene="lptB"
                     /locus_tag="JBH85_10390"
     CDS             2645..3370
                     /gene="lptB"
                     /locus_tag="JBH85_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HAU0946609.1"
                     /translation="MSLLEAKQLKKSFKGRTVVNGVSIHIKQGECVGLLGPNGAGKTT
                     CFYMIVGLQSCDEGHIILNGTDITQDAMHLRARHGISYLPQEASVFRKLTVAENIMAI
                     LELRKDLDDQKREEKLDLLLQEFHISHIENSLGMALSGGERRRVEIARALAIEPSFIL
                     LDEPFAGVDPISVIDIKKIILHLCDKGIGVLITDHNVRETLDICERAYIVSQGKILCE
                     GTPKAILANQQVRQVYLGEEFAL"
     gene            3404..3982
                     /locus_tag="JBH85_10395"
     CDS             3404..3982
                     /locus_tag="JBH85_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HAU0946610.1"
                     /translation="MLLIIDNYDSFTYNLVQYFQSLNQKVEVFKNDEIQIDTIRQSAP
                     QYLVISPGPNSPDESGISIEVIKEFHKHIPILGICLGHQCIAQAFGGKIIPAPEIMHG
                     KTSEITHHYQGLFTGIPNHFQATRYHSLAVDIMSLPNCFSIDAWAEDTIMAISHRQFP
                     LFGLQFHPEAILSQFGLQILENFLRYETQTSI"
     gene            3960..4982
                     /gene="trpD"
                     /locus_tag="JBH85_10400"
     CDS             3960..4982
                     /gene="trpD"
                     /locus_tag="JBH85_10400"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HAU0946611.1"
                     /translation="MKPKLLFEQLLSRQDLSSDQMQEVIHACMTGEFSDVQIATFLAL
                     MRMKGETVNELTAAAKVMRQLAHKIDLGNPLIDIVGTGGDGRNTFNVSTACSFVVAAA
                     GIKVAKHGNRSVSSRSGSADLLEQAGFILNLSDSQVQNCINQCQLAFLFAPHYHPAMQ
                     HARTARQQLGIRTLFNLLGPLINPAQVKRQVVGVFSTDWLKTIATVLANLGSERSLVI
                     SSQDGLDEISIAAKSEVVEYRDGNFKQWFISPEEYGLKHSSLDAIIVDSPEQSLHLIQ
                     SVLSGDSGPARDIVLLNSAAAIYCAKDGISFDAAIEEARIAIDSGKANLCFNKLRLLT
                     QTLNKE"
     gene            4987..5763
                     /gene="trpC"
                     /locus_tag="JBH85_10405"
     CDS             4987..5763
                     /gene="trpC"
                     /locus_tag="JBH85_10405"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HAU0946612.1"
                     /translation="MNSILERIAKHKLEEVAVAKKNKPLHVLSKQQPGEIRDFITALK
                     SNTSPAVIAEIKKASPSKGLIRKDFNVAEIAKIYTQNGARCLSVLTDIEFFQGHPDYL
                     ALAKSKTTLPVLRKDFIIDSYQIYESLVLGADCILLIVALLDDVQLMDFCQLAQELKM
                     SVLVESHTQDELERALRLPTPLIGINNRSLHNFKTDIQLSIQLKQLVPKDKIIITESG
                     INTREDIKLMQSHGINAFLIGESLMRADNIGKALQELMAN"
     gene            complement(5769..5954)
                     /locus_tag="JBH85_10410"
     CDS             complement(5769..5954)
                     /locus_tag="JBH85_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946613.1"
                     /translation="MNNIETPEQPIEYPEEPSEYPEQPLEYPEQPLEYPEQPLEYPDN
                     PELPEPEPSQTPEPGFE"
     gene            complement(6057..7445)
                     /locus_tag="JBH85_10415"
     CDS             complement(6057..7445)
                     /locus_tag="JBH85_10415"
                     /inference="COORDINATES: protein motif:HMM:PF13641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAU0946614.1"
                     /translation="MKRMMINLLVFINLCILCYFIFSLVAYTILLIYSFPEIIASYKL
                     SKYTNIYSIINKKHLPPVTVLIPAYKAEQTLANAVWSALKSEYPNLYVIVILDGDPDC
                     KTFNAITEIFKFEKLELINEEPIKTAKVNQGYISKTHSHLMLIDKEHFGVGDALNVGL
                     NLCFTPYLMTLDADSVMEPDAISEMIHYMLSNEHTIAVGGGVYLLNDCKVYQGQIVEA
                     NLPKRWISALQINEYMRSHLFNRTAWNRFGGTMSYSGTATLFQRQALLNVNGFDTSNF
                     SQDAEVIIKLHEYYRRKKMDYRIGFTPKAAIWTMTPNNIKSYTIQQNHWRRGLLRSTF
                     RYWYMFLNPRYKIQGLLGYPFYMLLEILAPYVEFTAYVCVFIAYYIGILNGYFALLYM
                     ILAWGFSSYLSLASAFINLITFNKYRKLNDVIKIFGLSIIDMAGFRQYLTTVKVWASF
                     HYLINRILGKPQ"
     gene            complement(7426..8478)
                     /locus_tag="JBH85_10420"
     CDS             complement(7426..8478)
                     /locus_tag="JBH85_10420"
                     /inference="COORDINATES: protein motif:HMM:PF13646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HAU0946615.1"
                     /translation="MMIMSELQFRLIIYFITIEFIIILSFIIASYISKLYFLIKKRSN
                     KKAYDNLKDLILQNKPIPSYLAKNVEIGLRVLKKIKPEDIPDWEKKRIEIIRDLMLPQ
                     ARQFINKRSWEKRYLLVLCFDYYISPKDYNLLIKLIKDNNLIISFNAMRVASQIGHPE
                     LLKEILERLKSEAHIFHAFAIHSLAASPELIKIIGEVLTSTDNPWLKKICYEILRVTS
                     SIPEYFDFTKADCYNENINVRLAAIRVLPYIDKNRYLDSYKQLIHDKNWIVRNVIVRT
                     LGELQDPASLDLLKSSLNDKEWWVRTNAAKTLSYYGVLGQKILEQYKDDREKTTTGEA
                     DYFLKIQQTRNEADDD"
     gene            complement(8475..>8703)
                     /locus_tag="JBH85_10425"
     CDS             complement(8475..>8703)
                     /locus_tag="JBH85_10425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRP containing protein"
                     /protein_id="HAU0946616.1"
                     /translation="YIGFIYMDGTSPDLTDLLTIDFIKIRDRLFLFEAQQPLNNTFSI
                     QYGIGYEEMFYPKQLLRTLVHFDLGLKAGFL"
BASE COUNT         2894 a         1589 c         1615 g         2605 t
ORIGIN      
        1 gcaggtatcc gttaccgaaa tatagggtac atcatttaaa tacattatgt tagaatgaaa
       61 accaaacaaa attacgactc aatgacctat gaacttttgc acacttggac tagcagttat
      121 tgaaactgaa gcacaagctg tatttgagct aactcaacga attgatgaac attttgaaaa
      181 agcttgtgaa ttactcttat catgcaaagg gcgtatcgtc gtcacaggca tgggaaaatc
      241 tggccatata gctaataaac tggcctctac tttttccagc actggcagcc ccgctttttt
      301 tatgcatcct ggagaagcaa gtcatggaga cttgggtatg ataactcgcc aggatatagt
      361 tgttgccatt tccaattcgg gcaataccca tgaaatagtt actttgcttc cattattaaa
      421 aaggcttgaa gtccccttaa ttacattgac cggcaataaa caatcaactc tggctaaatc
      481 tgccgatgtc aatctggatg tcagtattaa acaagaagct tgccctctgg gtcttgctcc
      541 aacaaccagt actacggtat cgctggttat gggggatgca ttggctatat ctcttttaca
      601 agcacgagga tttagtgcag aagacttcgc tctttcccat cctggaggcg cacttggcaa
      661 aaaattgttg ctaaaaatag acgatttatg tcatacagga gagcaacttc ccttagcgaa
      721 tgaaaacgca acagtgagtg acgctttaat tgaagtcacg aataaaaaac tgggaatgac
      781 ttgtgttgta gacaaccatg gctatttagt gggtgtatat actgatggag atatccgtcg
      841 aacattgaca cgtcaattta atatcaacac tactctaatc aaggacgtca tgactaaaaa
      901 ctgcagaact atttctaaag gcatgttagc tgccgaagct ttagcaatca tgcaaaaata
      961 tagcatcaca tccttggtag tagttgaaaa tgataataga ccctatgcgg tactccattt
     1021 acatgacttg ctaaaagcag gtgtttttta atacagagat agaaatgaac gaactattgg
     1081 aaaaagcgaa aaaaattaaa tgtcttattt gtgatgtaga cggagtgctc agtgatggct
     1141 tacttcacat tgataatcac ggcaatgagc tgaaatcatt ccatgtacaa gatggaatgg
     1201 ggttaaaatt attaatggcc gccgggatac aggttgcaat cattaccaca gcacaaaatg
     1261 ctgtagttga ccatcgaatg gagcaattag ggataactca ttactataaa ggtcaagttg
     1321 ataagcgtag cgcttaccaa catctaaaaa aaacattggg actcaatgat gaggagtttg
     1381 cctatattgg cgatgatttg ccagatttac ccttgataca acaagtagga ttaggagttg
     1441 cagtcagtaa tgctgtgcca caagttctgg aatttgctga ttggagaaca gagcggactg
     1501 gtggtagagg tgcagttcgt gaattatgtg acttaattct taacgcacaa aataaagcag
     1561 aattggcgat cacaggctat ttaaaacaat gaatattacc aagcaagcaa tttggctatt
     1621 cttgaccttg cttattttag caggatctgg ttggtattat gctcatttta atcaggctat
     1681 tatcaataaa aaaacgttgt caaatgaagt tgacacaacg atttcgcagc ttactgtaaa
     1741 gcaatttaat tcagaaggtg tgttaattaa cttattaacc actccacaag tagaatatat
     1801 tcctaacaat aatctccatt tgcttaaaaa accccatatc attattaggc aagacaatca
     1861 acccgcgtgg gaaatcaatt cattgcgggc aaaatcgttt gatggtggta aacaaattac
     1921 ttttatagag caagtagtag ttcatcaaaa tccaggagaa agcaccaggg aaagtacttt
     1981 aaaaactgaa gagattactt attatcccaa ggaaaaaaaa gcaacaacaa gtctttttgt
     2041 aacctttgaa caaccaggca atatcataca gtctactgga atgaatgcct atttggatga
     2101 aaaaagagta gaattactcc ataaagccag aggtagttat gacccagcta aaggttaaat
     2161 acattatact actattgttg atgttgtgct ccatttcagg aaatgctctt ccgcttgata
     2221 aggaaaaaat ggtgcaagta gtttctgatt cagccgattt aaatcagaaa aatcatcagg
     2281 gagtgtatat aggaaatgtt gagttcgttc aagggtcaac caatttgcgt gcagcaaaag
     2341 ccattacgca aggagatgcc aaaaatcaac tcactttagc catcgctgaa ggctctaaag
     2401 gcaagcaagc tcattattgg actacaacag cccctgataa acccccattc catgcctatg
     2461 ctgacactat aaaatattat ccgctaaaac atttaatcga attaattggg aatgctcgca
     2521 tagagcaagg acccaactct ctttcagcgg caaaaattag ttatgatact caggaacaac
     2581 atgttttatc acatagtgac gaaaaaacaa gaacgacaat cattatttat cctgaaaaga
     2641 aatcatgagt ttactagagg ctaaacaatt aaaaaaatca tttaagggcc ggacggttgt
     2701 gaatggtgtt agcattcaca ttaagcaagg tgaatgtgtc ggtttattgg gtcctaacgg
     2761 ggcaggtaaa accacttgtt tttatatgat tgtaggtctg caatcctgtg atgaaggcca
     2821 tattattctt aacggaacag acataactca agacgcaatg cacctaagag caaggcatgg
     2881 tattagttac cttccgcaag aagcctccgt ttttagaaag cttactgtcg ctgaaaatat
     2941 catggcgatt ctggaactaa gaaaagattt agatgatcaa aaacgtgaag aaaagctgga
     3001 tcttctctta caagagtttc atatttctca catagaaaac agcttgggca tggccttatc
     3061 gggcggcgaa agaagacgcg ttgagattgc aagagccctg gcaatagaac catcctttat
     3121 cttgcttgat gagccttttg ccggggttga tccaatttct gtaatcgata tcaaaaaaat
     3181 tatcctgcat ttgtgtgata aaggtatagg agttttaatt acagatcata acgtgagaga
     3241 gactttagac atttgcgaac gcgcttatat tgtaagccag ggaaaaattc tttgcgaagg
     3301 aacccccaaa gcgatacttg ccaatcaaca agtaaggcaa gtttatttgg gtgaagaatt
     3361 tgctttgtag cctcatttaa aagaatacat tttaattata cttatgttac taattattga
     3421 taactacgat tcatttacat acaacctggt acagtacttc cagagcttaa atcaaaaggt
     3481 tgaagttttt aaaaatgacg aaattcaaat cgatactatc aggcaatcag ctccgcaata
     3541 cctggtcatt tcaccgggac ctaactctcc tgatgaatca ggaatctcta tagaagtcat
     3601 taaagagttt cacaagcata ttccgatatt gggtatttgc cttggccatc agtgcatagc
     3661 tcaggcattt ggaggtaaaa tcatcccggc accagaaatc atgcatggta aaacctcaga
     3721 aatcacccat cattaccagg gtttatttac aggaatacca aatcactttc aagcgacgag
     3781 atatcattct ttagccgtgg atatcatgag cttgcccaat tgcttttcga tagatgcgtg
     3841 ggcagaagat acaataatgg caatatcaca tcgtcaattt cctctttttg gtctacaatt
     3901 tcatcctgaa gccatattaa gtcaatttgg cttgcaaata ctcgagaatt ttttacgcta
     3961 tgaaacccaa acttctattt gaacaacttc tatcccgaca ggatttaagc tcagaccaga
     4021 tgcaagaggt catccatgct tgtatgacag gtgaatttag tgatgtgcaa attgcaacct
     4081 ttctggcatt aatgcgcatg aaaggtgaaa cagtcaatga acttactgca gcggctaaag
     4141 tcatgagaca attagcccac aaaatagatt tgggaaatcc cctgatagat atagttggta
     4201 ctggcggtga tggaagaaac acttttaacg tatcgacagc ctgtagtttt gttgtagctg
     4261 cagcaggaat aaaagttgca aagcatggta accgttctgt ttcgagtcgt agcggtagcg
     4321 ctgatctatt agaacaagcc ggatttatac tcaatctttc tgactcacag gtacaaaact
     4381 gcatcaacca gtgtcaattg gctttcttgt ttgcgccaca ttatcatccc gccatgcaac
     4441 acgcgagaac tgcaaggcaa caattaggaa taagaacttt atttaattta cttggtccac
     4501 tgattaaccc ggctcaggta aaacgacaag tagttggtgt attttcaacg gattggctca
     4561 aaacaatagc cactgttctg gctaacttag gtagtgaaag atcattagta ataagctctc
     4621 aagatggact ggatgagatt agtattgcag cgaaaagtga agtagttgaa taccgagatg
     4681 gaaattttaa gcaatggttc atttctccgg aagagtatgg tctaaagcat tcttctttag
     4741 atgcaatcat agtcgactca ccagagcaaa gcctgcattt gattcaatct gtactttcag
     4801 gtgattctgg tccagctcga gatatagtcc ttctcaattc tgccgcagcc atttattgtg
     4861 ccaaagatgg catatcgttt gatgcggcca tagaggaagc aagaattgcc attgatagtg
     4921 gtaaagcaaa tctttgtttt aataaactcc gattattgac ccaaacttta aataaagaat
     4981 aaaatcatga atagtatcct ggaacgaata gccaaacata aactagaaga agttgcagtt
     5041 gcgaaaaaaa ataagccttt acatgttctg tcaaaacaac agccagggga aatacgtgac
     5101 ttcataactg ctttaaaatc caatacctca cctgcagtca tagctgagat aaaaaaggct
     5161 tctccaagca aaggtttaat tcgaaaagat tttaatgttg cagaaattgc caagatttat
     5221 acccaaaatg gcgcaagatg cttatctgtt ttaacggata ttgagttttt tcaaggtcat
     5281 cctgattatt tggctttggc aaaatcaaaa actactttgc ccgtattgcg taaagacttt
     5341 attattgatt cttatcaaat ctatgaaagc cttgtcttag gcgctgattg tattttactc
     5401 attgtcgcct tattagatga tgttcaatta atggattttt gccaactggc tcaagaactt
     5461 aaaatgtctg ttttggttga aagtcacacg caagatgagt tagaaagagc attacgctta
     5521 cccacccctc ttataggcat taataaccgc agcctacaca actttaaaac agacattcaa
     5581 ctgagtatcc aattaaaaca attggttcct aaagataaaa ttattattac tgaaagcgga
     5641 atcaacaccc gtgaagacat aaaattaatg caatcccatg gcattaatgc ctttttgatt
     5701 ggagagagtt taatgagggc agataacatc ggcaaagcat tacaggaact aatggctaac
     5761 taaataaact actcaaaacc tggttcaggg gtttgacttg gctcaggctc aggcagctct
     5821 ggattatcag ggtactctaa aggttgctca gggtactcta aaggttgctc agggtactct
     5881 aaaggttgct cagggtactc cgatggctcc tctggatact caattggttg ttctggtgtt
     5941 tcaatgttat ttatcatatc atctatcagt tgctatgtta tttaaattat agcaaatact
     6001 ttcaatgtat ctgattcact aatcttaaaa tcctggtgaa aatttacctt ttaattctat
     6061 tggggcttac ctaatattct attaatgagg tagtgaaatg aagcccatac tttaactgta
     6121 gtcaaatact gtctaaaacc tgccatgtct attatagata aaccaaatat tttgatcaca
     6181 tcattcaatt tacgatattt gttaaaggtt atcagattaa taaaggcact ggctaaactg
     6241 aggtaagaac tgaatcccca agcgagaatc atataaagca acgcaaaata cccgtttagg
     6301 atcccaatat agtacgcgat aaatacacaa acataagctg taaattcaac atatggtgcc
     6361 aggatttcaa gtaacatata gaaagggtaa ccgagcaaac cctgtatttt ataacgagga
     6421 tttagaaaca tataccaata acgaaaagta gagcgcaaga gtcctcttct ccaatgattt
     6481 tgttgtatag tatacgattt gatattattt ggtgtcattg tccaaatagc agcctttgga
     6541 gtaaacccta tccgataatc catcttttta cgacgataat attcatggag ttttataata
     6601 acttcggcat cttgtgaaaa attactggta tcgaaaccat ttacatttaa aagcgcttga
     6661 cgctgaaaaa gagtcgctgt accggagtaa gacatagttc caccaaaacg attccaggct
     6721 gtacgattaa ataaatgaga cctcatatac tcattaattt gtaatgctga gatccatctt
     6781 tttggtaaat tagcttcaac aatttgtcct tgataaactt tacaatcatt taatagatac
     6841 actcccccac caacagcaat agtatgttca ttactaagca tataatgaat catttcggat
     6901 atagcatctg gctccatgac ggaatcggcg tccaaagtca taagataagg agtaaaacag
     6961 aggtttaatc caacgttcaa agcatcacct accccaaaat gctctttatc gattaacatg
     7021 aggtgggagt gtgttttaga gatatatccc tgattcactt tcgctgtttt aataggctct
     7081 tcattgatca gttcaagctt ttcaaattta aaaatttctg tgattgcatt aaaagtttta
     7141 cagtcgggat caccatccaa aataacaata acatagagat ttggatattc cgatttcaaa
     7201 gcagaccaaa cagcatttgc aagagtttgc tctgctttat aagccggtat aagcaccgtt
     7261 actggtggca aatgtttttt atttataatt gaatagatat tggtgtactt tgatagttta
     7321 tagctggcta tgatttcagg aaaagaataa attaaaagaa tagtataagc aaccagggaa
     7381 aaaataaaat agcaaagaat acacaagtta ataaaaacaa gaagattaat catcatccgc
     7441 ttcattcctg gtttgttgaa tttttaaaaa ataatcagct tcaccggtag tcgttttttc
     7501 tctgtcatct ttgtattgtt caagaatttt ttggcctaaa acaccataat atgacagagt
     7561 tttcgcagca ttcgttctaa cccaccattc tttatcgttt agtgagcttt ttaatagatc
     7621 caaagaggca ggatcttgta actctcctaa agtcctcaca ataacattac gaactatcca
     7681 atttttatca tgaataagtt gtttataact atcaagataa cgatttttat ctatgtatgg
     7741 caaaacacgg atagcagcaa ggcgaacatt aatattttcg ttatagcaat cagctttggt
     7801 aaaatcaaaa tactcgggaa tactgcttgt cactcgcaat atttcataac aaattttttt
     7861 cagccaagga ttatccgttg aagttaaaac ttctccaata attttgatca actcagggga
     7921 tgcagccaat gaatgaattg caaaagcatg aaaaatatgg gcctctgatt tcaatcgctc
     7981 taatatttct tttaaaagct caggatgccc tatttgggaa gcaactctca tggcattaaa
     8041 actaattatt aggttattat ccttaattaa tttgataagt aagttatagt ccttagggct
     8101 aatataataa tcaaaacaca atactaaaag atatcttttt tcccaagacc ttttattaat
     8161 gaactgacgt gcttgaggta acattagatc gcgtatgatt tcaattctct ttttttccca
     8221 gtcaggaatg tcttctggtt taattttttt taatacacgt aaccctattt caacattttt
     8281 tgctaaatag gaaggaatcg gtttattttg gagaatgagg tcttttaagt tatcatatgc
     8341 ctttttattg cttcttttct ttatcaaaaa atataatttt gaaatatagg aagcgattat
     8401 aaaagataag ataataataa attcaatcgt gataaaataa ataatgagcc tgaattgtag
     8461 ttcactcatt atcatcacaa gaaacccgct tttagtccaa gatcaaaatg cactaatgtc
     8521 cgaagtagtt gtttgggata gaacatttcc tcataaccta ttccatattg aatagagaag
     8581 gtattattaa gcggttgctg agcctcaaac aggaacaatc gatcccttat ttttataaaa
     8641 tctattgtta gtaaatccgt taaatcaggt gatgtgccat ccatatagat aaatccaatg
     8701 tat
//
LOCUS       DACVWI010000122         8624 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.122, whole genome shotgun sequence.
ACCESSION   DACVWI010000122 DACVWI010000000
VERSION     DACVWI010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8624
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.122"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            104..934
                     /gene="minD"
                     /locus_tag="JBH85_10430"
     CDS             104..934
                     /gene="minD"
                     /locus_tag="JBH85_10430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HAU0946617.1"
                     /translation="MAKIIVITSGKGGVGKTTSSAAISSGLALLGHKTVVIDFDIGLR
                     NLDIIMGCERRVVYDFINVINGEANLNQALIKDKRIPNLCILPASQTRDKDALTLEGV
                     EKTLNELAKDFDFIICDSPAGIETGALMAMYFADHAIVVTNPEVSSVRDSDRILGILA
                     SKTKRAIENKAPVQEHLLLTRYDPERVERGEMLSVTDVKEILAIPLIGVIPESKSVLK
                     ASNTGTPVILDESSDAGIAYQDAIARFLGEERPMRFISIDKKGLFRRLFSKNKEEVTI
                     "
     gene            931..1200
                     /gene="minE"
                     /locus_tag="JBH85_10435"
     CDS             931..1200
                     /gene="minE"
                     /locus_tag="JBH85_10435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HAU0946618.1"
                     /translation="MSIFNYLRRRASTASVAKERLQIIISHERSQRNTPDYLPKLQEE
                     ILAVIAKYVNISRDQVSVNLERMEDSAVLELNITMPDKALEDSNS"
     gene            complement(1515..4001)
                     /locus_tag="JBH85_10440"
     CDS             complement(1515..4001)
                     /locus_tag="JBH85_10440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAU0946619.1"
                     /translation="MSELILILAAIGVAGTLLTRHASISVWAISYTIFLGLVLQFSSP
                     GLLSQIVLWAIEAVLVLGSIKPLRREVLSKHLFQIIKKTMPSMSITEREALEAGTVSW
                     EGDLFSGNPNFSLLRNAPTVALTEEEQAFIDGPVSTLCEMLDDWDITHNRTDLPPEVW
                     QFIKENRFLGMIIPKQYGGLGFSATAQMSILVKIYGRSITAATTISVPNSLGPGELLL
                     KYGTEEQKNYYLPRLADGREIPCFALTGPNAGSDAASIPDKGVVCRQEFNGELILGVR
                     LNWDKRYITLCPVATVIGLAFRMFDPDNLLGKGEDIGITCALIPATTPGITKGRRHFP
                     LNTGFMNGPTQGKDVFIPLDYLIGGASMAGQGWRMLMECLSAGRAISLPSSASGGAQA
                     VALASGAYARIRKQFNQPIGKFEGIEEPLARIASAAYIIDSSLTMAAAAIDNGAKPSV
                     AGAILKYHTTERARQLALDGMDIHGGKGICLGPNNYIGRGYQGSPIGITVEGANILTR
                     SLIIFGQGAIRCHPYVFKELESIRNNDLVAFDDSFFAHVGFVITNFTKSLIFGWTDAR
                     FSKSPASSVKRYYQLIHKYSSNLAFLADFSMIVLGGELKRKEKLSARLGDMLSCLYMA
                     SAVLKRFYEDGEPRADLPVVHWSCQQLLHECETAMHGVIINFPARWARIVLSLILKPL
                     GNRRHKPDDKLGHKVARILIEPNETRNRITRLVYKKPGDNCPLGRMEEAFHKICAVEE
                     LERKVMKAVKDNILHSLTFQEQILEALEHQILTPVEAKQLEEAEKARQDVIRVDDFAD
                     EELRRPSSLGEKVKSEKKIPARDDMETETA"
     gene            complement(4094..4879)
                     /locus_tag="JBH85_10445"
     CDS             complement(4094..4879)
                     /locus_tag="JBH85_10445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0946620.1"
                     /translation="MRELIHFAHGNGFPSLCYKQLLEQLETRFDCCFIDKIGHDPDYP
                     VGENWHNLVAEIIASIKRQAEQPVIAVGHSLGGVLSLLAAIEQPKLFKAVIMLDSPLI
                     GAFKSSMVRLAKALGIIDRVTPAFRTKKRREHWQNYEQLISYLKTRDLFKTFTEECLN
                     DYIKYGLQYKEDGYYLRFDRHVEYQIYRTIPHVIPRYKGKLIVPAALIYGDKSTVVDR
                     MDIRYMKNHFNVKCFKTMGTHLFPMEHPKAVGKQVIEVIDAII"
     gene            complement(4876..5793)
                     /locus_tag="JBH85_10450"
     CDS             complement(4876..5793)
                     /locus_tag="JBH85_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1189 domain-containing protein"
                     /protein_id="HAU0946621.1"
                     /translation="MYLMREQENVWESGVAKEKNKLKPIDAPIYSYWQALYMSFYSKR
                     LFVDVGKHWRGIGLIYLLLVIAICSIPFSIRIASDFNKTFNQQIIEPLLQLPTVYVQK
                     GNVIFDKPMPYLIRNDKNQVVIIIDTTGKVVDFTEEYPYLNILIKKNSINFLLPTPEL
                     LGSSPVNEQKGVPIVQPLDKDMNVVFDGKKIIQDNAISGLKYASQLMIYPIVVAILYS
                     IMVTVLLVIAFLGQVFSKIFFSFTISFKKSSRLLMVASTPMLVVLVTMLSLHFIFPGF
                     GVILLILLAAYYSYGIYGLRDESRKMVLK"
     gene            complement(5744..6835)
                     /gene="ugpC"
                     /locus_tag="JBH85_10455"
     CDS             complement(5744..6835)
                     /gene="ugpC"
                     /locus_tag="JBH85_10455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HAU0946622.1"
                     /translation="MATLNLIEVSKQVGETTILNRINIDIKKGEFMVVVGPSGCGKST
                     LLRLIAGLDVLSSGKILINNQCVNDTEAAKRDMAMVFQNYALYPHMTVFDNMAYGLKL
                     RRFSKADINQRVTEVANLLHLTPYLDRKPQALSGGQKQRVAMGRAIVRSPAVYLFDEP
                     LSNLDAKLRTEMRHEIKRLHQQFNTTSLYVTHDQTEAMTMADRILVLNQGEVEQIGTP
                     QELYQSPATQFVAGFTGHYPINFISGKYDKKTDSIYTEIGIVYSAPNWLHSVDDNADL
                     IVAIRPEHIQLCSSQSQDAVELHVEFVDDMGADKLIQAKCLKNNKQINLRISAEQMVS
                     NRQLHVELPKLKLHVFDERTGKRVGEWRG"
     gene            complement(6835..7662)
                     /gene="ugpE"
                     /locus_tag="JBH85_10460"
     CDS             complement(6835..7662)
                     /gene="ugpE"
                     /locus_tag="JBH85_10460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HAU0946623.1"
                     /translation="MRQFKRLGSHGLILLFIGLMMAPLYLAVVAASHEGTVMMHSQLP
                     LIPGTSFFKNIKSVLTEGLAVTGGEPITSMLVNSLFMAFIIAVGKIILALGSAFALVY
                     FDFSFKKSCFALIFATMMLPVEVRIVPTFQVVASFGLLNSFSGLTLPLLASATGTFLF
                     RQFFKTISKELVDAAKLDGAGPLRFFIDIVLPLSRTQISALFVILFVYGWNQYLWPLV
                     ITTETKMTTIVMGIRYLAGVADQVPEWHYIMAVALIALVPPCMVVMVMQRWFEKGLK"
     gene            complement(7659..8537)
                     /locus_tag="JBH85_10465"
     CDS             complement(7659..8537)
                     /locus_tag="JBH85_10465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAU0946624.1"
                     /translation="MSKFNHQRLFAWLFIVPQLIVTIIFFIWPACSALLQSFFYTDAF
                     GLHKNFAGLTNFFDLFLDPGYAKAIWVTFIIAISVTLITMSLGLLMATLINYRGKSQG
                     VYKTLLIWPYAIAPAVAAILWRFLCHPTLGWLTQVLEYLGIHFNYVNDANQALLVVIL
                     TASWQQFSYNFLFYFAALKAVPQTLIDAAIMDGANTWQRFWQIIFPILSPTTFFLLIM
                     NLIYGFFDTFGIIQVMTHGGPGNSTTNLIYKVYEDGFEGMDLGSSSAQSVLLMLIVIA
                     VSLLQFKYLEKKVHYE"
BASE COUNT         2844 a         1802 c         1441 g         2537 t
ORIGIN      
        1 ttataacaat taagctttgg ataacttgaa ttaatgaatg aataacgtgt aaactgttgg
       61 ttaaatattg tgttgaatcg aaaaaaatag gaagggttca gcgttggcta aaataatagt
      121 aattacatct gggaaaggcg gagtaggtaa aactacttca tcagcagcga tttcttcggg
      181 acttgcactc ttagggcata aaactgttgt tattgatttt gatatcggtt taagaaacct
      241 ggatatcatt atgggctgtg aaagacgtgt agtttatgac ttcatcaacg tcatcaatgg
      301 tgaagccaac ttaaaccaag ctctcatcaa agacaaacgg atccctaacc tttgcatact
      361 gcccgcatca caaactcgtg ataaagacgc actaactctg gaaggagtag aaaaaactct
      421 caatgagcta gcaaaagatt ttgatttcat tatttgtgac tcccctgctg gaattgaaac
      481 tggagcactt atggcaatgt attttgctga tcatgccatt gttgttacta atcctgaagt
      541 ctcttctgtt agagattcag atagaattct gggaatactg gccagcaaaa caaaaagagc
      601 tatagaaaat aaagcacctg ttcaagagca cttgttattg acacgatatg atcctgagcg
      661 agtagaacga ggtgaaatgt tgtctgtaac tgatgtaaag gaaatattag ctattccttt
      721 aatcggtgtt atacctgagt ccaaatcggt tcttaaagca tccaatactg gtacgccagt
      781 tattctggat gaatcaagcg atgcgggcat tgcttatcaa gacgccatag cacgcttttt
      841 gggcgaagaa agaccaatgc gatttataag tattgataaa aaaggactat ttcgtcgctt
      901 attcagtaaa aacaaggagg aagtgacaat atgagtatct tcaattactt acgcagaaga
      961 gcctcaaccg cttctgttgc taaagaacgc ttacaaatca tcatttctca tgagcgttct
     1021 caacgcaata caccagacta tttgcctaag ctgcaagaag aaattcttgc ggttatagca
     1081 aaatacgtga atataagccg agatcaagtg agtgttaatc tggagcgcat ggaagatagt
     1141 gccgttcttg agctaaacat tacaatgcca gataaagcat tggaagacag caactcataa
     1201 ttctattaag ttttttatac ttataggtat tattacacta tcaaataatg tagtttacct
     1261 gcctgcttaa catacgcatt aaaacataat ctccttcaag aatatttcaa aaaactttaa
     1321 ataaaatacc taaatgagtt aagcattaca tgcatgggag ttaaactcat tcttaatgac
     1381 tctgcctgta aagatcaatt gattaaaacc aaaatcgata aaaacatatg ggaatgatta
     1441 gcctgactct aattgctgaa tagaattaca tcatgtaatt ctattcagca ttatagaaaa
     1501 gaatctagta taaattaagc tgtttcagtt tccatgtcat ccctggctgg aatctttttt
     1561 tctgacttta ccttctcacc aagtgacgag ggacgacgta gttcttcatc agcaaaatcg
     1621 tctaccctta taacatcctg tctggccttc tcagcctcct ctagttgttt cgcttcaact
     1681 ggagtcaata tttgatgctc aagcgcttcc aatatttgct cctggaaagt caatgaatga
     1741 aggatattat ctttaacagc cttcatcact ttgcgctcta gctcttcaac tgcacaaatc
     1801 ttatgaaatg cttcctccat ccttcctaag ggacaattat cccctggctt cttataaacc
     1861 aatctcgtga ttcgatttct tgtttcatta ggctctatca gtattcttgc taccttatga
     1921 cccaatttat catccggttt atgccttctg ttgccaagag gttttagaat taacgataaa
     1981 acaattcttg cccagcgtgc cggaaaatta atgattaccc catgcatagc ggtttcacac
     2041 tcatgcaata actgctgaca actccaatga acaacaggta aatcagcacg aggttctccg
     2101 tcttcgtaaa atcgtttcaa aacagcggat gccatgtata aacaactcag catgtcacct
     2161 aagcgtgccg ataatttttc ttttcgcttt aactcaccac ctaatacaat cattgaaaaa
     2221 tctgctaaaa aagccagatt ggaactgtac ttatgaatta attgataata tctttttaca
     2281 gaactggctg gagacttgct aaaacgagca tcggtccatc caaaaataag tgactttgta
     2341 aaattagtaa taacaaaacc cacatgggca aaaaaggaat catcaaacgc aactaaatca
     2401 ttatttctaa tactttctaa ctccttgaaa acataaggat gacaacgtat cgctccttgc
     2461 ccgaatataa ttaagcttct ggttaaaata ttggcccctt ccaccgtaat gccaatagga
     2521 gaaccttgat atcctcttcc aatataatta tttggaccaa ggcatatccc tttaccacca
     2581 tgtatatcca ttccatccag tgcaagttgt ctcgctcttt cagtagtatg atactttaaa
     2641 atagcccctg cgacagaagg ttttgctcca ttatctatag ccgctgctgc catagttaaa
     2701 gaagaatcaa tgatataagc agctgaggct attctggcaa gaggttcttc tatcccctcg
     2761 aacttgccga ttggttgatt gaattgttta cggattctgg cataggcacc agatgctaat
     2821 gcaacggctt gtgcacctcc actggcgctt gatggcaaag agattgcacg acccgcgctt
     2881 aaacactcca ttaacattcg ccacccttga ccagccatag aagcaccgcc gatcaaataa
     2941 tcaagcggaa taaaaacatc tttgccttga gttggaccat tcataaaccc tgtatttaaa
     3001 gggaagtgcc tgcgcccttt tgtgatcccc ggagtagttg caggaataag cgcacaagta
     3061 ataccaatgt cttcaccttt gcctagcaag ttgtcgggat caaacattct aaaagccaaa
     3121 ccaataactg tcgccaccgg gcacaaggta atatatcgtt tgtcccaatt caaacgaact
     3181 cccaatatga gctcaccatt gaactcctgc cggcaaacaa cacctttatc aggtatagag
     3241 gccgcatccg aaccagcatt aggtcctgtc aaggcaaagc atggaatctc ccttccatcg
     3301 gccaatcttg gtaaataata atttttttgt tcttctgtcc catactttaa aagtaattca
     3361 ccaggcccca gtgaattagg tactgaaata gttgtagcag cagtaataga acggccatag
     3421 atttttacca aaattgacat ctgagcagta gcggaaaaac caagtccacc atactgcttt
     3481 ggaattatca ttcccagaaa acgattctct tttataaatt gccaaacttc ggggggaaga
     3541 tccgttctat tatgagtgat atcccaatca tctaacattt cacagagggt actgacaggg
     3601 ccgtctataa aagcctgctc ttcttcagtt aatgcaacag ttggagcatt cctcaaaaga
     3661 gagaaattag gattaccact aaataaatct ccttcccaac tcactgtacc tgcttccaat
     3721 gcctctctct cagtaataga catggaaggc atcgtttttt taattatttg aaacaaatgt
     3781 ttcgatagta cttctcttct taaaggctta atggagccta aaaccagtac agcttcgatt
     3841 gcccataaga cgatttgcga caacaaacca ggagaactga attgcaaaac caagccaaga
     3901 aaaatggtat aactaatagc ccatacagat atcgatgcat gtcgggttaa taacgttcca
     3961 gccacaccaa ttgctgctag tattaatata agttctgaca caacattctc cttattatag
     4021 gctaatccaa atgaaagaat ttaatagact tctttctcga taacaaaatc tgcaaaccag
     4081 ttaagacgtc taatcaaatt atagcatcaa taacttctat aacttgcttt ccaacagctt
     4141 tagggtgctc cattggaaat aaatgtgtac ccatagtttt aaaacatttt acattaaaat
     4201 gatttttcat atatcgaatg tccattctat caactacagt actcttgtca ccatagatta
     4261 atgcggcggg aactataagt ttacctttat aacgaggaat aacatgcgga attgttctat
     4321 atatttgata ttcaacatgc ctgtcaaaac gcagatagta tccgtcctct ttatattgca
     4381 aaccatattt aatatagtca ttcaagcatt cttctgtaaa tgttttaaat aaatccctgg
     4441 tttttaaata ggaaattaat tgttcatagt tttgccaatg ctcacgcctt ttctttgttc
     4501 taaaagcagg ggttactctg tctatgatac ctaaagcctt agccaatctc accatgcttg
     4561 atttaaaagc accaatgaga ggcgagtcta gcataatgac cgctttaaat aatttcggtt
     4621 gctctatcgc agcgagcaaa ctcaaaaccc ctcccaaaga atggccaact gcaatcactg
     4681 gctgctctgc ttgtcgttta atgcttgcaa tgatctcagc aaccaggtta tgccagtttt
     4741 ctccgacagg ataatcagga tcatggccaa ttttatctat aaaacaacag tcaaaacgag
     4801 tttccagctg ctctaataac tgtttgtaac ataatgatgg aaatccattg ccatgagcaa
     4861 aatggattaa ttctctcatt tgagcaccat tttcctgctt tcatctcgga gaccatagat
     4921 accgtaactg taataggctg ccaataatat caacaaaatc actccaaatc ctggaaaaat
     4981 aaaatgaagt gataacatgg ttaccaaaac tactaacatt ggcgttgatg cgaccattaa
     5041 cagtcggctg gattttttaa aggatatagt gaacgaaaaa aagattttgg aaaatacttg
     5101 tcctaaaaag gcaatgacca ataaaacagt caccataatc gaatataaaa tagcaaccac
     5161 tattggatat atcatcaatt gagaggcata tttcaaacca ctaatcgcat tatcctgaat
     5221 aatttttttg ccatcaaata ccacattcat gtctttatct aatggctgaa caataggaac
     5281 tcctttctgt tcatttactg ggctgctacc caataattct ggtgttggca ataagaaatt
     5341 aatactattt ttcttaatca gaatattaag gtaaggatac tcctctgtga aatctaccac
     5401 tttacctgtt gtgtctataa ttattaccac ttgattttta tcatttctga ttaaataggg
     5461 cattggttta tcaaaaataa cattaccttt ttgtacataa acagttggca gctgcagcaa
     5521 aggttcaatg atttgctgat taaacgtttt attaaaatca gaagcaattc ttatagaaaa
     5581 cggtattgaa caaatagcaa taaccaataa tagataaatc aaaccaattc cacgccaatg
     5641 ttttcctaca tcaacaaaaa gcctctttga ataaaaagac atatacagcg cttgccaata
     5701 actatagata ggagcatcaa tcggttttaa tttatttttt tctttagcca cgccactctc
     5761 ccacacgttt tcctgttctc tcatcaaata catgcaattt caatttgggt agctctacat
     5821 gtaattgtct gtttgagacc atctgctctg ctgaaattct caaattaatc tgtttattat
     5881 tttttagaca tttcgcctga atcaatttat cagcccccat atcatcaaca aattccacat
     5941 gaagttcaac tgcatcttga ctctgactgg aacatagttg aatgtgttcg gggcgaattg
     6001 ccacgataag atctgcattg tcatcgacag aatgaagcca attgggtgct gaataaacta
     6061 tacctatttc ggtataaata ctatccgttt ttttatcgta tttgccagaa ataaaattaa
     6121 taggatagtg cccggtaaaa ccagctacaa actgcgtagc cggactttga tacagttctt
     6181 gtggcgttcc aatttgctca acttccccct gattaagcac cagaattcta tcagccatag
     6241 tcatcgcttc ggtttgatca tgagtaacgt ataaactggt cgtattaaat tgttgatgca
     6301 atcgtttaat ttcatgtcgc atttcagttc ttaattttgc atccagattt gataatggtt
     6361 catcaaataa ataaactgct ggagaccgca caatagccct acccattgct actctctgct
     6421 tttgtccacc agacagtgct tgcggctttc tgtccagata tggagtcaaa tgcaataaat
     6481 tagctacttc ggtcactctt tgattaatgt ctgctttact gaagcgcctc aactttaaac
     6541 cataagccat attatcaaag accgtcatat gaggataaag ggcataattt tgaaacacca
     6601 tcgccatatc cctttttgcg gcttcggtat cattaacgca ttgattatta ataagtattt
     6661 tacctgagct taaaacatca agtcctgcta tcaatcgtaa caaagtagat ttgccacaac
     6721 ctgatgggcc aacaacaacc atgaattcgc ctttctttat atcaatgtta attcgattca
     6781 aaatggttgt ttctccgacc tgttttgaca cctcgatcaa attcagtgtt gccattattt
     6841 caatcccttt tcgaaccaac gttgcatcac cataaccacc atacaaggcg gcacaagagc
     6901 tatcaatgcg acggccataa tatagtgcca ctccggtact tgatccgcta cgcctgccaa
     6961 ataccgaatt cccatcacaa tagttgtcat tttagtttct gtcgtgatga ccaaaggcca
     7021 taagtattga ttccacccat agacaaacaa gattacaaac aaggcggaaa tttgagttct
     7081 tgacaagggt aacacgatat caataaaaaa tcttaatgga cctgcgccat ctaatttagc
     7141 agcatcaacc agttctttag atatggtttt aaaaaactga cgaaataaaa atgttccagt
     7201 agctgatgcc aataatggca aggttaaacc agaaaatgag ttcaataggc caaatgaagc
     7261 aaccacttga aaagtaggga ctattcttac ttccactggt aacatcatcg ttgcaaatat
     7321 cagggcaaaa caagactttt taaaagaaaa atcaaaatat accaatgcaa aagcagatcc
     7381 cagagccaaa atgatcttac ccactgcaat gataaatgcc atgaataagc tatttacaag
     7441 catggaagtg ataggctcac ctccagtgac agctaaacct tcagtcagca cacttttaat
     7501 atttttgaaa aatgaggtcc ctggaatcaa tggcaactga gaatgcatca tgaccgttcc
     7561 ttcatgactt gcagcaacta cagccaaata caaaggagcc atcattaatc ctataaataa
     7621 caatattaac ccatgcgacc ccaaacgttt aaattgtctc attcgtaatg aacctttttc
     7681 tcaaggtatt taaattgtaa caaggaaact gcaattacaa taagcatcag taatacagat
     7741 tgggctgatg aacttcccaa atccattccc tcaaaaccgt cttcatacac cttatagatt
     7801 aaattagttg tgctattacc aggacctccg tgtgtcatga cttgaataat tccaaatgta
     7861 tcaaaaaaac cataaatcag gttcattatt aacagaaaaa aggtagtggg cgacaggatt
     7921 gggaaaatta tttgccagaa tcgttgccat gtattggccc catccatgat tgctgcatca
     7981 attaatgtct gaggaactgc tttaagcgca gcaaaataaa ataaaaaatt gtaactaaac
     8041 tgctgccaac tggcggttaa aatgacaaca agcaaagcct gattcgcgtc gttgacataa
     8101 ttaaaatgaa ttcccaaata ctcaagcacc tgagttaacc atcctaaagt tggatgacat
     8161 aaaaaccgcc aaagtattgc agcaacagca ggggctattg cataaggcca tatcaacaaa
     8221 gtcttataaa ctccttggct ttttcctctg taatttatta aagtagccat taaaagacct
     8281 aaactcatag tgataagcgt cacactaatc gcaattataa aagtaaccca tatggctttt
     8341 gcataaccgg gatcaaggaa taagtcaaaa aaattggtca atccggcaaa attcttatgc
     8401 aaaccaaatg cgtcagtata aaaaaaggat tgcaataatg cgctgcaagc aggccaaata
     8461 aaaaaaataa tagtgacaat tagctgaggg actataaata gccaggcaaa caaacgctga
     8521 tgattaaatt tagacattaa ctaaccatgt agttgttaaa atgataatta tcatcgcaat
     8581 agtttaaaat aaaattatat cgattttaaa tcattatgcg agtt
//
LOCUS       DACVWI010000123         8584 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.123, whole genome shotgun sequence.
ACCESSION   DACVWI010000123 DACVWI010000000
VERSION     DACVWI010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8584
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.123"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(98..1321)
                     /locus_tag="JBH85_10470"
     CDS             complement(98..1321)
                     /locus_tag="JBH85_10470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2223 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946625.1"
                     /translation="MVDEKNYFLKIDFARQRIIDLPAGEFKYYLYILLESIKSQNVPS
                     RHEFLAVLLKLLDTLYKLKELKTSNFLDNQCPSSQLLKELMLHLCELQQVAKTHHFTA
                     QVMVVLLHIGGIISAVALSVVGGLLGGILGFVNGLCEYKPVIGFLVGTFTGTVLGGLF
                     GFRAPKKLFKNEIQRQIKFGLDGLGESLDNIKQEYSSSMFGPNKIKPFSFYLGQVETE
                     IKQLFNDDSEYEEFLNHKIDYEINSFLASFIGESLLHGCVGHHAYIKINIKNREYLIE
                     FTPQPTDTKEAPAQSETRTVSGKKIVEMLAYHKKLQETNPPTASFILTKMKPGDNDCF
                     SYVNKILIGTNQQGATIKRFANMGLIGSLLGMGIETLSPFKPDFFQTTSSVRTHKEKM
                     PGHSNDLSMNSLLPQ"
     gene            1961..3742
                     /gene="ppgA"
                     /locus_tag="JBH85_10475"
     CDS             1961..3742
                     /gene="ppgA"
                     /locus_tag="JBH85_10475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PpgA"
                     /protein_id="HAU0946626.1"
                     /translation="MKEPRELNRQPNPEHMAQLIKDTPKDVWFHLAKYLPDHELLNLM
                     QVDKRLNRFFKEGTPPKEIIKKIEHAPLKVVSSGVNTFILTQYHGKPLLLACGQNKDG
                     QLGCGDTKIRTALTPVNIPESFASIESVQISLFHAVLWGRDKDNKPILATCGLNDKGQ
                     LGCGDYKSRALFTQVKLAEDITSIESVEINIFHSVILGHDKHNRPVLASCGSNHLGKL
                     GCGDIKDKTTFTRMKLPTEIVSIDTLQMNWHTIVSGRDKNNKPVLAACGWNDRGQLGC
                     GDKKERALLTPVKLPENIVSIQSAQIGTSRTTVLGRDKDNKPILTYCGWNERNQMGWS
                     NTEDKTALTPAKLPENIVSIELMQISTSRTVILGRDKNNKPILAACGLNNHGQLGCGD
                     IKTRTTLYPIKFPKDIVSIESVQISDNHTVILGRDKHKNPIIAACGLNNYGQLGCGDT
                     KNRMLLTPIKLPKEIVCIDSVTVKYSSLFVSGRDKNHRPILAACGDNRYGQLGVPSKK
                     LLTELTIVPTPILTLPATPKREASSRKEATEKALVFATHGSREQKPRKSNRILTAIIA
                     SFGRFFTGAHPHTPDSDKESPSPKRSA"
     gene            complement(3937..5466)
                     /locus_tag="JBH85_10480"
     CDS             complement(3937..5466)
                     /locus_tag="JBH85_10480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH3 auxin-responsive promoter family protein"
                     /protein_id="HAU0946627.1"
                     /translation="MNWKRFLIAAMTKKKYQFFLNDTKHPKEARERLWNSEIVPLLKK
                     SSYWQELLKDQSSIVLNDFGITEYEDYQEGLLAAQHSTIQPFNGEELIFWSETSGTSG
                     VRKFFPITDSFQKQFQRTMAPYIYSLTQRFPGFFKEKMLYLVAVDTHKTTPAGIPTGW
                     ISNFNYRHLPSFIKKFYAMPDEVFASHEAYNQWGPIYGLASDLSAVFAVTPMVIDAFY
                     QRCIDGFKDYLPYLLGDKLLPSHLPPLKITRKRRRHLQALAKVDHLSFKQLWPSLEMA
                     GCWTSGLCEYPAQQLQKLLGSEIKLVDGTYSATEGWLTVPVETNSVGGILHPGAHIVE
                     FIPEGAAIEKENLLQCWELEVGKKYEVFLTTAMGFVRYRLKDIVKCTGYLNSSPKLEF
                     CYKTQLLKLETCSITGKELQSAVQATLINLEPYWYFARNSVGNRIVLVTDDEAEISEL
                     PLKKLHEQLIHISPTYAHSVETEEVLPVTLLQLPKEKLLAGMHGQTKPKFISQEVIAE
                     R"
     gene            complement(5473..7164)
                     /locus_tag="JBH85_10485"
     CDS             complement(5473..7164)
                     /locus_tag="JBH85_10485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAU0946628.1"
                     /translation="MTSYENLIQLSEFFESCLGNPLENNSPVNFQQILLADEQEVLAS
                     SAIEFIKQWGYLDYTIPHYLGGKLSSLDELYTLTRLLARRDITMAIMFGLAFFAALPI
                     WIAGNSKQKKHLSESLRQGKIGALALTEEEHGTDLTSNKMNAKPIEDGWEISGRKWCV
                     NFATLSEYAVVLCRTNEKGGLLGFSLFYIDKKLAEKGISPTPKLPTHGVRGLDISGFS
                     FDKVKVSKDALIGKEQRGLEITYKVFQISRTLCACLAIGGADTALRLALSYSLERQLY
                     GKSVFEIPAVKQRLGELFTLLLIADCTAQVMVRACTVIPKKMSLWSAIIKFLIPHIGE
                     DIAEQCAIILGARAYLRTTQWAIFQKIRRDIQVVGLFDGSTQVNLSLIAGNLLPQAGM
                     RGKHQAEHSEKIEKIFNVRLSCPPFKEDRLGLFTHEEDDVLAGIMRLNSPAINPLITT
                     IRHEIEKLDQEVIHLHDQKLFDPRSLTVFRLAEKYCWIFAASCCLQFWHYNQEILSDD
                     LQNTDWLDLAMQLILKRLNSCSMIDSLLQEAMSERLYSFYQEKQLFSIMPIHIAG"
     gene            complement(7173..8584)
                     /locus_tag="JBH85_10490"
                     /pseudo
     CDS             complement(7173..8584)
                     /locus_tag="JBH85_10490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096239.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl CoA carboxylase subunit alpha"
BASE COUNT         2727 a         1851 c         1554 g         2452 t
ORIGIN      
        1 gttttgagga gcggacttta tatgcagtaa acgcgcacaa agtggcaata acatgaaaaa
       61 gacagattat ctttgcaatc cgatattgga gggctggtta ttgaggtagc aggctattca
      121 ttgacaaatc attcgaatgg ccaggcattt tttccttatg agttctcact gaacttgtag
      181 tttgaaaaaa atctggttta aaaggactta aagtctctat ccccattcct aataaagaac
      241 caatgagccc catattggca aatcgcttga ttgtagcgcc ttgttgattt gttccaatga
      301 gtattttatt gacgtaactg aaacagtcat tatcaccggg tttcatttta gttaatatga
      361 aagacgctgt cggtggattc gtttcctgaa gttttttatg ataggccaac atttctacaa
      421 tctttttacc acttactgtt cttgtttcgc tttgagctgg agcttctttg gtatcggttg
      481 gctgaggggt aaattctatt aaatactcac gatttttaat attaatcttt atatacgcat
      541 ggtgacctac acacccatga agcaaggatt ctccaataaa actggccaga aaggagttaa
      601 tttcataatc gatcttatga tttagaaact cctcatactc gctatcatca ttgaaaagct
      661 gcttaatttc agtttctact tggccaagat aaaatgaaaa tggtttaatt ttatttggac
      721 caaacattga tgaggaatat tcctgcttga tgttgtccaa gctttcacct aaaccatcaa
      781 gaccaaattt tatttgccgc tgtatctcat tcttaaatag ctttttcggt gccctgaaac
      841 caaaaagccc accaagaact gtgccggtaa atgttccaac aagaaaacct ataactggtt
      901 tgtactcaca taaaccgtta acaaaaccca gtattcctcc taacaatcca ccgactacgc
      961 ttaaagctac agccgaaata ataccgccaa tatgcagtaa aacaaccatc acttgagcag
     1021 tgaaatgatg agtcttggcc acttgttgca attcacagag gtgaagcatt aattctttga
     1081 gtaattggct tgatgggcat tgattatcta aaaaattgga agtttttaat tcttttaatt
     1141 tatacaaggt atccagcaat tttagcagta ctgctaaaaa ttcgtgcctg gatgggacat
     1201 tttgggattt tatcgattct aacaaaatat atagataata cttaaactct cctgcaggca
     1261 agtcgataat acgctgtctc gcaaaatcta tcttcaagaa ataatttttc tcatccacca
     1321 tgacaaaaca aacctaaggg gaaacataac cgaaatacac gatttaaaat aatactacaa
     1381 tcacaccatt tgatcaaaaa aaaatcacta ttggacaacg attctgaaaa cgataatcac
     1441 agctactatt accagaatga tagctgccaa aattgactaa atcatactga aaagggcaaa
     1501 aaaatattaa tagaattgct ttttcagtac gatgaagtca atgcaaatgg agtcacttat
     1561 aaacttcatg gcaagcccat gagagaaaaa cattttgact tcaagaatac cctcattaaa
     1621 gaactaaaaa tacaacttga tttgttagaa acacccgagg acaataaaaa ttggtaggaa
     1681 ttaattatgc agtctattgt gggcgctcag gtttaggcgg agcacgctca ccctcagccc
     1741 cagcattcag aactccatgg attggtgaaa atttaactgc tatcaaaaca ttgtgcgaaa
     1801 taaggacgaa agattttatt aatctcagat ctaacctcga gcaacagaca attattgatg
     1861 ctttacaacg agtttatcga aaatgatggg attaagatag gttactttaa tcctattttt
     1921 ataattactc acataattta actaatggaa aatatatatc atgaaagaac ctcgtgaact
     1981 taatcgccaa cccaatccag aacacatggc tcaactcatt aaagacacgc ccaaagacgt
     2041 ttggtttcat ctcgcaaaat atcttcctga ccatgaatta ctcaacctca tgcaagtcga
     2101 caaacgctta aatcgcttct tcaaagaagg taccccccca aaagaaataa taaaaaaaat
     2161 agaacacgcc ccccttaagg tcgtttcttc aggcgtcaat accttcattc taacccaata
     2221 ccacggcaaa ccactcttac tcgcctgcgg acaaaacaaa gacggtcaat taggctgtgg
     2281 ggatacgaaa attagaacag cactcacccc tgtcaatatc cctgaatcat ttgcctccat
     2341 cgagtcggtg cagatcagtc ttttccatgc agtgctttgg ggacgtgata aagacaataa
     2401 gccgatacta gcgacttgcg gattaaatga taaaggtcag ctgggttgtg gagactataa
     2461 gtctagagca ttattcaccc aagtcaaatt agcagaagac atcacttcca tcgaatcagt
     2521 agaaatcaac attttccatt ctgtgatttt aggccatgat aaacataaca gaccagtact
     2581 tgcatcctgt ggaagcaatc acttgggtaa attaggttgt ggagacataa aagataaaac
     2641 aacattcacc cgaatgaaat tacctacaga aattgtttcc atagatactt tacagatgaa
     2701 ttggcataca attgtttcag gacgcgataa gaataacaaa ccagtactgg cagcttgtgg
     2761 atggaatgat agaggccaac tagggtgtgg ggataaaaag gaaagagcat tactcacccc
     2821 agtcaagtta cctgaaaaca tcgtttccat ccaatcagca caaattggca ccagtcgtac
     2881 tacagttcta ggtcgcgata aagacaataa accgatactt acctattgtg gatggaatga
     2941 aagaaaccaa atgggttgga gtaacactga agataaaaca gcactcaccc cagcaaaatt
     3001 acctgaaaac atcgtttcca ttgagttaat gcaaatcagt actagccgca ctgtaatttt
     3061 aggtcgcgat aaaaacaaca aaccaatatt ggctgcttgt gggctaaata atcacggtca
     3121 acttgggtgc ggtgatatta aaaccagaac aactctttat ccaatcaaat tccccaaaga
     3181 cattgtttct attgagtcgg tgcaaatcag tgataaccat acggtgattt tgggaagaga
     3241 taagcacaag aatccgataa tagcagcctg tggacttaat aattacggtc aactaggctg
     3301 tggggataca aaaaacagaa tgctactcac acccatcaaa ctgcccaaag agatagtttg
     3361 catagactcc gtgacagtaa aatacagcag cctttttgtt tcaggtcgtg ataaaaacca
     3421 tcgtcccata ctggcggctt gcggggataa tcgctacggt caacttgggg ttccaagcaa
     3481 gaaacttcta accgaactga ccatcgttcc cacacccatt ctcacattgc ctgcaacacc
     3541 aaaaagagag gcttcttcca ggaaagaggc tacagagaaa gctctagtct ttgctaccca
     3601 tggcagcaga gagcaaaaac cccgaaaaag caataggata ctcactgcaa tcattgcatc
     3661 attcggtcgt ttttttactg gagcacatcc tcatactccg gactccgata aagaaagccc
     3721 ttcacccaaa cgaagcgcct aagcaaaaca tgcattttag aagcaagagg atccaaaagt
     3781 cctcttatgc tcgttcatca attgattgtt ttttgaattc catttgtcct attgtttgat
     3841 acaatcgtca taatttaaac aacaatgata aattctttca gggcctgttt acatttgtca
     3901 ctcagtcgat atgttgaagc tttattttca ggtatgttat ctctcagcaa taacctcctg
     3961 agagataaat ttcggtttgg tttgcccatg catgccagct aataatttct cctttggaag
     4021 ttgcaacaag gtcacgggca aaacttcttc ggtttccaca ctatgagcat aagtcgggct
     4081 aatatggatt aattgctcat gcagtttttt cagtggtaac tcagaaatct ctgcctcatc
     4141 atcagtcact aaaacaatac gattcccaac actattgcgc gcaaaatacc aataaggctc
     4201 taggttgatc agggttgcct ggactgcact ttgcagttcc ttgcctgtaa ttgagcaggt
     4261 ttccaatttc agaagttgag ttttataaca aaactcaagc tttggtgaac tattcaaata
     4321 tccggtacat ttcacaatat ctttgagtct gtagcgaaca aatcccatag ctgttgtcaa
     4381 aaatacttcg tatttcttcc ctacttccaa ctcccaacat tgtaaaagat tctctttttc
     4441 aattgccgcc ccctctggaa taaactccac aatatgggca cctggatgta aaattccacc
     4501 cacgctgtta gtctctacag gaactgttaa ccacccctcg gttgccgaat aagtaccgtc
     4561 taccagttta atctcagaac ccagcaattt ttgtaattgc tgagcgggat actcacaaag
     4621 accagaggtc cagcatccag ccatttccag tgatggccac agttgtttga atgagagatg
     4681 gtcaaccttg gctaaagcct gcaaatgtct tcgtcgtttc cgggttattt tgagaggtgg
     4741 aagatgtgat ggaagaagtt tatctcccaa taaataagga agatagtctt taaaaccgtc
     4801 gatgcagcgt tgataaaaag catcgattac catcggcgtc accgcaaata ccgcacttaa
     4861 atcagaagcc aaaccataga tgggtcccca ctggttgtat gcttcatggc tggcaaaaac
     4921 ctcatcaggc atggcataaa attttttaat aaaggaaggc aaatgacgat aattaaaatt
     4981 actaatccat cccgtaggaa taccggcagg agtcgtttta tgagtatcta ccgcgacaag
     5041 atacaacatt ttttccttaa aaaagccggg gaatcgctga gttagactgt aaatatacgg
     5101 ggccattgta cgctgaaatt gtttctgaaa tgaatctgtt atagggaaaa actttctaac
     5161 tcctgatgtt cctgaagttt ctgaccaaaa aatcaattcc tcaccattaa aaggttggat
     5221 agtagaatgc tgggctgcca acaatccttc ctgataatct tcatattctg taattccaaa
     5281 atcattaaga actatagaag attgatcttt taataattcc tgccaataag atgatttttt
     5341 cagcaacggg acaatttctg aattccataa tcgttctctg gcctctttag gatgtttggt
     5401 atcattcaga aaaaattggt attttttctt tgtcatggca gcaattaaaa accttttcca
     5461 attcatcctt cattaccccg caatatgtat tggcataata gaaaacagct gtttttcctg
     5521 ataaaaagaa tacaaacgct cactcatagc ttcttgtaac aagctatcaa tcatcgaaca
     5581 tgaattcaat cgcttaagaa ttaactgcat agctaaatcc agccaatctg tattttgcaa
     5641 atcatcagaa agtatctcct gattatagtg ccagaactgc aaacaacagc tggctgcaaa
     5701 aatccagcaa tatttttctg ccaaacgaaa aacagttaag ctgcgtgggt caaataattt
     5761 ctgatcatgt aaatggataa cttcctgatc caatttttca atttcatgac gtattgtagt
     5821 aatcagtgga ttgattgcag gtgagtttaa acgcatgata ccagccaata catcatcttc
     5881 ctcatgagta aacaaaccga gtctatcctc cttaaaagga ggacaagaca aacgaacatt
     5941 aaaaattttc tcaatttttt cggaatgctc tgcctgatgt ttaccccgca tgcctgcctg
     6001 aggcaacaaa ttaccagcaa taagtgataa attaacttga gtacttccat caaacaagcc
     6061 aaccacttga atgtcgcgtc ttattttctg aaaaatcgcc cattgcgtgg ttctcagata
     6121 agctctggca cctagaataa tggcacactg ttctgctata tcttctccaa tatgcggaat
     6181 aagaaattta ataattgctg accaaagact catttttttc ggtattaccg tacaggcgcg
     6241 aaccataacc tgagcagtgc aatccgcgat taataaaaga gtaaacaatt cgccaagccg
     6301 ctgttttact gcgggtattt caaacactga tttgccatac agttgtcttt ccaagctata
     6361 tgataatgcc agcctcaaag cagtatcagc gcccccaata gccaaacagg cgcataaggt
     6421 tcgcgaaatc tggaatacct tataggttat ttccaaacca cgttgttcct tccctattaa
     6481 tgcgtcttta gatactttca ctttatcaaa agaaaaacca ctgatatcta accctctgac
     6541 tccatgagtc ggcagcttgg gcgtaggaga aatacccttt tcggctaatt ttttatcgat
     6601 ataaaacaaa gaaaaaccta ataacccgcc cttttcatta gtacgacaca acaccacagc
     6661 gtactcgctc aaggttgcaa aattaacaca ccattttcgc cccgaaattt cccagccatc
     6721 ttcaattggc ttggcattca tcttattgga agtcaaatca gttccatgct cttcttcggt
     6781 caaagccaaa gcacctatct ttccctggcg aaggctctca ctcaaatgtt tcttttgctt
     6841 tgagtttcca gctatccata ttggcaatgc agcaaagaaa gccaatccaa acataatagc
     6901 catcgtgatg tcacgtctgg ccaacaacct ggttaaggta tatagctcat ccagggaact
     6961 cagcttaccc cctagataat gaggtatggt atagtccaaa tacccccatt gtttaataaa
     7021 ttctattgct gacgaagcta atacttcctg ctcatcagcg agcaaaattt gttgaaaatt
     7081 aacaggggaa ttgttttcca gaggattacc caggcatgac tcaaaaaatt cagacagttg
     7141 tatcaaattt tcataagagg tcattatttt ccttatacaa tagagtgttt tgccgggggc
     7201 atggtttcca tgcttctata taaaaactcc aaatgggagg caagacgact gcgaatttgc
     7261 gctgcctgga taatttcatc aatcaagccc aatgaataag cctccatgag ggaatcatca
     7321 atttgagact tttctgtcaa ttgggattgt gatgattcct gtactggttg accatccatg
     7381 gcttgcacct tattagttgt ttccttcccc atgacaccaa gatttgctgt ttccagagcc
     7441 aaaaccaaat cgccattctg tgatttggtt tgcatcatga gaaaggctgc cgctccataa
     7501 catttacgca cgatgacact tagccttggc actctggttt gcatagctac gcaaaacctt
     7561 gcaccatgct gcaataatcc cttttgctcc tctcttttac cgggcataaa accgggaaca
     7621 tcgataaaag tcaaaattgg aatagaataa gcatcacata ttcttataaa tttggctgct
     7681 ttttgagctg catcggaatc gatggctccg ctgtaacgaa tgctttgatt agcgacgacc
     7741 ccaacagcaa agccatgtat atgcacaaaa gcacaaatca tcgcctgtcc ataagtcctt
     7801 ttgtactgga taacgtttga attatccacg acagcctgaa ttaaattgag catattaaat
     7861 ggcattctcg gatttgcagg aatatcagga atggggtgat taggctccat gataggatga
     7921 actggcggac gttcattggt atgtagagga aaaaagccaa gcattgcttt cacatggttt
     7981 atttgtgcgg taacactatc gtccacgaaa tcagcaatac ccgttgtcgt tgcatgcagt
     8041 gttgcgctcc ccagctcgcc catagtcact ttttcactaa tggcttgttg tactaccgta
     8101 gggctagtca ccataagata gcttctatgc ttgttaaaaa ataataagtc cattaacaca
     8161 gcagaatagg ccggagctcc aagagtgggt gccagtatca ctgcaaattg tgggataatt
     8221 cctgacagtc taatatttcg agcaataatt tgagtgtatt cgtcgccact cagcaaattt
     8281 tcttcgagag aaaccccggg agatgctaaa aaggcaacaa taggaatgcg taatttttcc
     8341 gccttatcca ttaaatgaat aatctttcta gcgccttgtc gggtaacata ccccctgttg
     8401 actgaagaat catgagcata aatcgctact ggcctttgat tcactttggc taatccggta
     8461 atcacctcag cgccaggaag ggaatgaaga ttattatctg gaatatattc agaacctatt
     8521 ggtaaaaagc tttgttcatc aattaaatta tctatccatt taattaacgt ctatctgtat
     8581 gttg
//
LOCUS       DACVWI010000124         8552 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.124, whole genome shotgun sequence.
ACCESSION   DACVWI010000124 DACVWI010000000
VERSION     DACVWI010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8552
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.124"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            65..529
                     /locus_tag="JBH85_10495"
     CDS             65..529
                     /locus_tag="JBH85_10495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946629.1"
                     /translation="MVSWDLFNKEIGMYFSRCISHGAIAGIIAGIVFTFFLVMGGMLE
                     TLGSMINMPTKGGGLLVHAVMSIGSGIVFALVLDWLMHSWVSAILLGLLFGFAMWVGG
                     PMTLLPYFASGVPLFAKWTMEGFKQNIPPLVGHLVYGLILGVTYYAFKRRNK"
     gene            745..1590
                     /locus_tag="JBH85_10500"
     CDS             745..1590
                     /locus_tag="JBH85_10500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAU0946630.1"
                     /translation="MKYQQKLRNMIDFIGKHLDEELSLESLSEIFCISKFHFHRLFTA
                     FTGLSLQQYIKWLRLKRAAHQLIVDKDQSVINIAINAGFESHEAFSRAFKKACGFSPS
                     QFRQGFGRSYWEQPPYCLPGQSRTDMKVDIKSIDKIRLAVIEHKGDPKLLGESINKLV
                     SWAKSQSINLKPRAGEAFALAYDDPKTTPPSDFRIDLGIKVPENLKLDGVIEKFLPSG
                     RYAVTVHKGSRNNIGDVVYYLYRDWLPNTSEQLGDLPCIFCYYNFDHEVAETELLTEC
                     WLLLK"
     gene            complement(1862..2608)
                     /locus_tag="JBH85_10505"
     CDS             complement(1862..2608)
                     /locus_tag="JBH85_10505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946631.1"
                     /translation="MNFITDEHSSSIQLPGINTIHWKQCFDLTDVRQEFLLREAERAL
                     REKAYATLSNIVRKVKIFNDDGYYFDTDVVPIEKLPAITENTPFLSQAKASYGAEFAK
                     HRFVISALYGSKHSPVFNEALTVMHETYQVKSLQDAIRENPEKSDYLRSYYSASLMLS
                     RFVKRLYTNEQDYQKMIEDCQNEFGNPTAFQIIQDGSWGEGLNAVLMESKHLAATTIQ
                     RFFRVAQALNQVNSKQPTTYTKSSQKPRIF"
     gene            complement(2887..5145)
                     /locus_tag="JBH85_10510"
     CDS             complement(2887..5145)
                     /locus_tag="JBH85_10510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3141 domain-containing protein"
                     /protein_id="HAU0946632.1"
                     /translation="MFAEIPKIQEQLHNVLEYSQSMTSLWMQSIDKSLEQTNKVTQSL
                     INLNQQQIYPYPNILNDAIEYTVDFMQRSILFWDIMRKRGNQYLKHEQEGQPPVLIFS
                     YNMLMDGRHFERPVNYALVEIIPPEGIQIDPAKRPYVIVDPRAGHGAGISGFKDASQV
                     GLALRAGHPVYVIIFFPVPEPNQTLVDVTAAHEKFLTEVALRHPQSPKPCLIGNCQGG
                     WAILTLMAANPDVAGVAVVNGAPLSYWGGENGKNPMRYIGGIWGGSWIAQMAGDLGNG
                     KFDGANLVMNFEMANPKVTYWSKYYNLFANLDKEEIRFLNFERWWGGFSLLNVNEMRG
                     IIDNLFIGNKLVHGKIPLGQSGNNLDLRNISVPVIIFCSEGDNITPPQQALNWVSDLY
                     SNTLEIKLDGQVIVYLIHKSVGHLGIFVSSEVAKKEHNQIIDLLNYIEHLAPGLYELK
                     LNETKENPKSPPHYLAYIEERSINDIRKGQESNVAIFNLVRMVSEYNAMSYDLFMAPI
                     IRNISNEYTAELIRKLHPLRQNQYLLSDLNPLVHPVSWISPFIRQNRIKISENNPFLT
                     QQLNFSKLINALWDFFSASRDNTVELMFYAVYGYIQLLAPFDPRRDMIVHSPEKDNQE
                     KITQSIIAHISDGGVPEAILRILLLLVKIQGYIIGANLPDVIQKLRECNALKHLDKNG
                     FKQIVHSQTIMIEHDPELAFNTIPHLLKSQEERSMVIQFIEDILKSLKVSPSEEYKKK
                     FQRIKELLQNQV"
     gene            5674..7122
                     /locus_tag="JBH85_10515"
     CDS             5674..7122
                     /locus_tag="JBH85_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2160 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946633.1"
                     /translation="MFSANQSLDFAWLSMQMFLINLLKDKIMRYAVTYCAMDHEFSGN
                     PFWHSCILLSQWDDNGKIEVVDNWGFYGVPSTVRDTWLSKLKIKLGLDVDLKGNHGML
                     RHEELRYLDVGYGLHGVTFELTKEKFDLLQLKCQTMLEEQKQAVKEVVESQGIAGKQK
                     YRIYEHEEYSPLIFALEKIKAKQKGHQPRLKPFELNLSFTLWGPALNQSYTCKSLMVD
                     LLKGILTQEQIARITEAGKHPTVPRYSGKLERIYLHSSGPLREHKKSSGAIVHYRDLQ
                     DEGVKLHWTLPPQEIEALSGDTIKLLEISEEYCDEVKQAISKLQKLEWLFIDAKLPEK
                     YKPYQDDLVARIRQYYEAFAQVEPKKAKSTATGWMGFAFSLLSLPRDLDEKCLLQKLN
                     NAKYLINSLYMAIVDHWKIYDDWPSETKEDSTEYNPLEALAAYLCEEDKKKLCKIIGR
                     NYLDPSSEEEFDDIEESEWEQPELSRSVASPM"
     gene            7415..8536
                     /locus_tag="JBH85_10520"
     CDS             7415..8536
                     /locus_tag="JBH85_10520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAU0946634.1"
                     /translation="MNALTSWIKAWSQKFFPNQKKNENKEEEADLTQEKKVRPNADFY
                     ENYFSLVAAGTRLKLIEAMFGVNLFSLFENKAWVLEKDIIEKLQLMPIRARKWLHLLS
                     SEHFLIQIKVNGQQAYQLPEEFIELIHSEEFPAMEMFFKTWLVSAEENLTDVLRFGKV
                     KTSVSWPPKTQQEAEWLEDWMTRTSDQPTYCLLQSINFKKVNKFLDVGGGDGTMACTF
                     VKKYPHLKAAVYNLPMSAQMARKNIESRKLNHRVHVIEGDFIEKDAFPVGFDLILFTR
                     VLFDWDDQVCRKLLRMAYQALPKNGLVGICEFYKEDNNDICLASEYRYIFHDDFGVNV
                     MKRASEYQNMLEKIGFTIVQPHKVKGMHFYYCSLILARK"
BASE COUNT         2572 a         1411 c         1734 g         2835 t
ORIGIN      
        1 ttaagacatt gccattaatt tttctacctt aattgttgat tattaagtaa actgatgatt
       61 ttgaatggta agctgggatc tatttaataa ggagattggc atgtattttt caagatgtat
      121 ttcacatggc gctattgcag gaattatagc aggaattgtt tttacctttt ttttagttat
      181 ggggggcatg ctcgaaacat tgggaagtat gattaatatg ccaacaaaag gaggaggcct
      241 tttggtgcat gctgtaatga gcattggcag cgggatcgtt tttgccctgg ttctggattg
      301 gttaatgcat tcttgggtct cagccattct tcttgggtta ttgtttggtt ttgcaatgtg
      361 ggtcggcggc ccaatgacct tgttacccta tttcgcttca ggggtgcctt tgtttgcaaa
      421 atggactatg gaaggattta aacaaaacat accccctttg gttgggcatc ttgtgtatgg
      481 gttgatattg ggtgttactt attatgcttt caagcgcagg aataagtgac ttcatttttc
      541 agcgtaacaa attgatttta tttaaagata cagtgacatc aaaaggtggt gattgctttt
      601 tatggcaatc gccatctcaa tttagcaaaa ataattgtat acatcacatt tttctcaatt
      661 aaatcagcaa aaatggtcaa atattttcag taagaaaaca gtattcttat tctgtaaatc
      721 aagttaataa tcggaaacaa gaaagtgaaa tatcaacaga aattgagaaa tatgattgat
      781 ttcattggaa agcatctcga tgaagagctt tctcttgaaa gcttaagtga aattttttgt
      841 atatcaaaat ttcactttca tcgcttattt actgcattta ccggattgtc tttgcagcag
      901 tatattaaat ggctacgctt aaaacgcgct gctcatcagc ttattgtcga taaagatcag
      961 tccgtcatta acattgcaat caatgcaggt tttgagtctc atgaagcctt ttccagggcc
     1021 tttaagaaag cttgtgggtt tagtccaagt cagtttaggc aaggttttgg gaggtcatat
     1081 tgggagcagc caccgtattg tttgcccgga cagagtagaa ctgatatgaa agtagatatt
     1141 aaaagtattg ataagatacg attagctgta attgagcaca aaggcgatcc taaattgctg
     1201 ggtgaaagca ttaacaagct ggtatcctgg gcaaaatctc aatcgattaa tcttaaacca
     1261 cgcgccggag aagcgtttgc ccttgcttat gatgacccta aaacaacacc accatctgat
     1321 tttcgtattg atcttgggat caaggtcccc gaaaatttaa aattggatgg tgtgattgaa
     1381 aagtttctgc catcaggtcg ttatgcagtg acggtacaca aaggttcgcg taataatatt
     1441 ggtgatgtgg tttattatct ttatcgagat tggttaccca atacctcaga acaattagga
     1501 gatttaccct gtatcttctg ttattacaat tttgatcatg aagtagctga aacggaactt
     1561 ttaacggaat gttggctttt gttaaaataa tccgctttaa acagcagtca gaatagctga
     1621 taacaataga tcgggcataa ccggcatctt tcattttatt gctgtgttac aaacgtttct
     1681 gaggcaattt ttactattta taacttcgct cctcaaaacg tttgtgcctt gcctaaaaca
     1741 aaataatcag cttatgcaag aggtctttta ttattatggt actttataaa agtacataaa
     1801 taaaaataaa acgcgtgcta attggtttta ttgcgtcttt aaatagttag tcaatttgtc
     1861 ttcagaagat ccttggtttt tgagaggatt tagtgtaggt cgttggctgt ttggaattca
     1921 cttgattcag agcttgtgct acccgaaaaa atctttgtat ggtagttgct gccaggtgtt
     1981 tgctttccat caaaacagca tttagtccct ctccccatga accatcttgt ataatttgaa
     2041 atgcagtagg gttcccaaac tcattttggc agtcttctat cattttttga taatcctgtt
     2101 catttgtata aagtctttta acaaaacggg ataacataag agatgcggaa taataggaac
     2161 gaaggtagtc tgatttttcc ggattttctc taatggcatc ttgtaatgat tttacttgat
     2221 aagtttcatg catgacggtc aatgcttcat tgaatactgg agagtgcttg ctgccataaa
     2281 gcgcagaaat aacaaaccga tgcttggcaa attctgcacc ataacttgct ttagcttgtg
     2341 acaagaaagg ggtattttca gtaatagcag gcaatttctc tataggaacg acatcagtat
     2401 caaaataata cccgtcatca ttaaaaattt taaccttgcg aacaatattc gataaagtag
     2461 cataggcttt ttccctgaga gcacgctccg cttctctcag caaaaactct tgtcgaacat
     2521 ccgtcaggtc aaaacattgt ttccagtgaa tggtatttat tccgggaagc tgaatagaag
     2581 aagaatgttc atcagtgatg aaattgattt gatagtctgg gtttaaacta tgccattttt
     2641 ttaaatgctg tagatatttt tagggaaggc gttgtgatcc tacccaaatg atattaattt
     2701 ctttagacat attgtgtcta ccaccaatta gaaaaaaatt gcttttatag caacgcattc
     2761 agaatgtcaa taaaataaac aattgaggtg ggggatttca tttgtctgaa agatgaatga
     2821 ttgattttcc aataggatat ctataggttt aggcttgatt gagagcagta tggcccaatt
     2881 cggaaatcaa acctggtttt gtaacagttc ttttattctt tgaaatttct ttttatattc
     2941 ttcggaaggg gatactttta aagattttaa tatatcttca atgaattgaa tgaccattga
     3001 gcgttcttct tgtgatttca gtaaatgagg tattgtatta aatgcaagtt caggatcatg
     3061 ctctatcatt attgtttgtg agtgcacaat ttgtttgaat ccatttttat ctaaatgttt
     3121 aagagcattg cattcacgta gtttttgaat gacatcaggt aagttagcgc caatgatata
     3181 gccttgaatt ttcactaata atagtaatat acgcaaaata gcctctggta cacctccatc
     3241 actaatatgg gcaataattg attgagttat tttttcctga ttatcttttt caggggaatg
     3301 aacaatcata tctcttctgg gatcaaatgg agctaataat tgaatgtagc catagacagc
     3361 ataaaacatt agttccacag tattatcacg agacgcgctg aagaaatccc ataatgcgtt
     3421 tataagcttt gaaaaattta attgctgagt taaaaaggga ttattttcag aaattttaat
     3481 gcgattttga cgaataaaag gtgatatcca tgatacaggg tgcactaatg gattcagatc
     3541 actcaataaa tactgattct gccttagtgg gtgtaatttt cgaatcaatt ctgcagtgta
     3601 ttcgttactt atattacgga ttatcggagc cataaacaag tcatagctca tggcattgta
     3661 ttcagatacc atacgaacaa ggttgaagat tgctacatta ctctcctgtc ctttcctgat
     3721 gtcgttaata gagcgctctt caatataagc gaggtaatgt gggggtgact tgggattttc
     3781 ttttgtttca ttcagtttta gttcatataa acctggagcc aaatgttcta tgtaatttaa
     3841 taaatcaata atctggttat gttctttttt agccacctca cttgagacaa aaatacctaa
     3901 atgaccaaca ctcttatgga taagataaac aataacttgt ccatccaatt tgatttccag
     3961 agtatttgaa taaagatcag aaacccagtt taaggcttgt tggggtggtg taatgttgtc
     4021 gccttccgag cagaaaataa taacaggcac gctaatgttt cttaaatcca ggttattacc
     4081 cgattgcccc aagggtattt tgccatggac cagtttgtta ccaataaaca aattatcaat
     4141 tattcctctc atttcgttca cattcaaaag agaaaaacct ccccaccatc gctcaaaatt
     4201 taaaaatcgg atttcttctt tatcaagatt ggcaaagaga ttgtaatatt tgctccagta
     4261 agtgacttta ggattagcca tttcgaagtt cattaccaaa ttagccccgt caaatttgcc
     4321 gttacccaaa tcaccagcca tctgtgcgat ccagctccct ccccaaattc ctccgatgta
     4381 gcgcatggga ttttttccat tttccccacc ccaataggaa agaggagcgc cattgactac
     4441 agcgacccct gctacatctg ggttagcggc cataagggtt aaaatagccc atcctccctg
     4501 acaattacca attaagcagg gtttgggact ttgagggtga cgcaaggcta cttcagttaa
     4561 aaatttttcg tgggctgcgg tgacatccac cagcgtttga ttgggttcag gaacagggaa
     4621 aaagataata acgtaaactg ggtgtcctgc ccttaaggca agtcctactt gtgacgcgtc
     4681 tttaaaaccg ctgattcctg ctccatgacc agcccgcgga tcaacaatca cataaggtct
     4741 ttttgcagga tcaatctgga tgccttcagg gggaatgatt tccaccagtg cataatttac
     4801 aggtctctca aaatgtctgc catccatgag catattataa gaaaaaatga gaacaggagg
     4861 ttgtccttct tgttcatgct tgagatattg attgccccgt ttgcgcatga tgtcccaaaa
     4921 cagaatgctt ctctgcatga agtctacggt atattcaatg gcatcattta atatgttggg
     4981 ataaggataa atttgttgct gatttaagtt gattaaagat tgcgtcacct tgtttgtttg
     5041 ttcaaggctt ttatcaattg attgcatcca aagagaagtc atggattggg aatattcaag
     5101 aacattatgg agttgctctt gaattttggg tatttcggca aacatctttt tctcctgtgg
     5161 cctctcaatt cggggttctt taactctata tcattaacaa attttgacta tcagtgtatg
     5221 ttgctatcat tctcttcttt tttcatattt tcgtaaggcg gttttctctt tagagaaata
     5281 tcttcttcaa acgataataa aaccattcgc gtttttttag ccttttaaca cgttccggtt
     5341 tgctggctgg ggcaaatagt aggcattgtg catcgagcat ttaaacccat ttgttaatca
     5401 cttttaaatc attatagaca gttattatca aaacagtaaa tgcaccgtgt tcactgaaat
     5461 tctattgtta cgctttggat ttgtatcaat tttgttttta gtttgaaagg ttaaaaattt
     5521 atttctacta atttatatgt taggcagttg ggtttgcttt tattgggaaa tttccagggg
     5581 ttatctcatt atctgtttag ccgttgacgg caatatgggg atctgtaata gtttcatagg
     5641 attgtattaa gtgagtcagg tttaagcagt tcactgttct cagctaatca atctctagat
     5701 tttgcctggt tatccatgca gatgttttta atcaatcttc ttaaggataa aataatgaga
     5761 tatgcagtta cctattgtgc gatggatcat gagtttagtg gtaatccttt ttggcatagt
     5821 tgcattttat tatctcaatg ggatgacaat ggaaagattg aggtagtcga taattggggt
     5881 ttttatgggg tgccatctac tgttcgtgat acgtggttaa gtaaactgaa aatcaagttg
     5941 ggtctggatg ttgatttgaa gggcaatcat ggtatgttac gacacgaaga actgcgttat
     6001 ttggatgttg gctatggttt acatggagtt acttttgagt taaccaagga aaaatttgat
     6061 ttactgcagt tgaaatgcca aacaatgttg gaagaacaga agcaagcagt taaggaagtt
     6121 gttgaatcac aggggattgc tggtaaacaa aaataccgta tttatgagca tgaagagtat
     6181 tccccgttaa tttttgcttt ggaaaaaatc aaggcaaaac aaaaaggcca tcagccaagg
     6241 cttaaaccat ttgagttaaa tttgtcattt accctgtggg ggccggcttt aaatcaatcc
     6301 tatacttgta aatcactgat ggttgattta ttaaaaggca tactgactca agagcaaatt
     6361 gcccgaatta ctgaagcagg aaaacaccct accgtaccaa gatacagtgg taaattggaa
     6421 agaatttatt tgcatagcag cggaccatta cgtgaacata aaaaatcttc cggtgcgatt
     6481 gttcattatc gtgatttgca ggacgaggga gtcaaattac attggacatt gcctccacaa
     6541 gaaattgaag cgttatccgg agataccatc aaattactgg aaataagcga ggagtattgt
     6601 gatgaggtaa aacaagcgat aagcaaactg caaaaattgg agtggttatt tattgatgcc
     6661 aaattaccag agaaatataa gccttatcaa gacgatttgg ttgctcgtat tcggcaatat
     6721 tatgaagcat ttgctcaggt tgaacctaaa aaggctaagt caacagccac aggctggatg
     6781 ggattcgcct tttcattgct ctctttgcca agagatcttg atgaaaagtg tcttttgcag
     6841 aaattaaata atgctaaata tctgattaac agtctataca tggctattgt tgatcattgg
     6901 aaaatttatg atgattggcc atctgaaact aaagaagact ctactgaata taatcctctt
     6961 gaagctttgg ctgcttattt atgtgaagag gataagaaga aactttgtaa gattattgga
     7021 cgaaattatc tggatccttc gtcagaagag gagtttgatg atattgaaga gagcgaatgg
     7081 gaacagccag agttgagcag gagtgttgca agtcctatgt aacagcctac atcaagtcat
     7141 ttttttaaat agcaaatgcg gattattaca ctggatgatg tctgcatttg tacacttatt
     7201 gttaccattg tgtgatttga gggaactggc tgaacgggtt tttcacttct agagaactta
     7261 cgccccccaa tctctttgtt aaaaagagtt ttagttcagt catttatttt atctaaattt
     7321 tctcattaaa aacatttttt gccttggcct tgggtttttt tgtcagtcct gttctattct
     7381 catattaata acactcttaa acgaatattg tgggatgaac gctttaacat cgtggataaa
     7441 ggcatggtca cagaaatttt tccccaatca gaaaaaaaat gagaataaag aggaagaggc
     7501 tgatttaacc caagaaaaaa aggtgaggcc taatgccgat ttttatgaaa attatttttc
     7561 tcttgttgcc gctggtacca gacttaaact gattgaagcc atgtttggtg tcaatttatt
     7621 ttctttattt gaaaataagg catgggtttt agaaaaggat attatagaaa aattgcaatt
     7681 aatgccaata agggccagga agtggctgca tcttcttagt tcagagcatt ttttaataca
     7741 aattaaggtt aatgggcagc aagcttatca attacccgag gaattcattg agttaataca
     7801 cagtgaagaa ttccctgcca tggaaatgtt ttttaagacc tggcttgtta gtgcagaaga
     7861 aaatctgacc gatgtattgc gctttggaaa agtcaagaca agtgtttcct ggcctccgaa
     7921 aactcagcaa gaagcagagt ggcttgagga ttggatgact agaacatctg atcagcctac
     7981 ctattgttta ttacaatcta tcaattttaa aaaggtcaat aaatttttgg atgtgggtgg
     8041 tggtgatgga actatggcgt gtacttttgt taaaaaatat ccgcatttaa aagcagcagt
     8101 ctacaatttg ccaatgtctg cgcagatggc aagaaaaaat atcgaatcga ggaaactaaa
     8161 tcatagagtg catgtgattg agggggattt tattgagaag gatgcttttc cggtaggatt
     8221 tgatcttatt ttatttacaa gagttctgtt tgattgggat gatcaggtgt gtagaaaatt
     8281 attaagaatg gcttatcagg ccttaccaaa gaatggatta gtcggtattt gtgaatttta
     8341 taaagaggat aataacgaca tttgccttgc ctcggaatat cggtacattt ttcacgatga
     8401 ttttggtgtg aatgtgatga aaagggcctc agaatatcag aacatgttag aaaaaattgg
     8461 tttcactatt gttcaaccgc ataaagtaaa ggggatgcat ttttattatt gttctttgat
     8521 attggctcga aagtaaaaac ccttatcttt at
//
LOCUS       DACVWI010000125         8509 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.125, whole genome shotgun sequence.
ACCESSION   DACVWI010000125 DACVWI010000000
VERSION     DACVWI010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8509
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.125"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..916
                     /locus_tag="JBH85_10525"
     CDS             <1..916
                     /locus_tag="JBH85_10525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lpg1803 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946635.1"
                     /translation="FEFLCDLIDIQIKKYVELAKLKVGEDAIINAALIYEEVNELLGF
                     AEKLLKEIETNSKSDSMDMTIFDRVFEQVKFYVEQEYLRSYAEWLLIENNSKDTVYNR
                     TKEQLLRLSEIKSFDDKGFSQPSTEIQQQCQHDSVQIVYSILNLAREVRKNPDMGFDD
                     SIPHNKLNVLRRNATTRYVEFGNEIDKLHQHSEEFLQQSSLGVFDAELAYESALSKAK
                     DHDLKLNTLFGRYKENKETASVPQSLSLVNKVDEENIMTEKKPSTEVSDNKTPFFSTS
                     NLLFFGGIVLAAVIFVPRLLTHLKVNKL"
     gene            974..1294
                     /locus_tag="JBH85_10530"
     CDS             974..1294
                     /locus_tag="JBH85_10530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946636.1"
                     /translation="MSDCLYIFILPRYQAKNQGLKFKLTTPSFLNKWLFHVAYNKRLI
                     ISYRMLLLFSNTLRLLFAARSHLCDNFVLAHIIIWNKLWKKINKKHYQRRFRKLNANL
                     AKGL"
     gene            1219..2265
                     /gene="recA"
                     /locus_tag="JBH85_10535"
     CDS             1219..2265
                     /gene="recA"
                     /locus_tag="JBH85_10535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HAU0946637.1"
                     /translation="MEENKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGS
                     LGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPS
                     YAQKLGVKVDELLVSQPDTGEQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMG
                     DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFY
                     ASVRLDIRRIGSIKKGEEILGSETRVKVVKNKVAPPFKMTEFDILYNEGISRESEIIN
                     LGVQLNLIEKSGAWYSYKQEKIGQGKENVRLYLKENPQVAAELEQQIRTELLEKKLSV
                     LASSSEDLFETIDD"
     gene            2258..2710
                     /gene="recX"
                     /locus_tag="JBH85_10540"
     CDS             2258..2710
                     /gene="recX"
                     /locus_tag="JBH85_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095826.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HAU0946638.1"
                     /translation="MTKAFDSALRLLTRREYSAMELCDKLKQKGFSTNDVQNALYECQ
                     RLGYQSDVRFVENYIRVRIHQGYGPLKIRQELKNKGIDPDLIQSVLHQEKDNWVNYAL
                     RAWEKKFKRQDDFSYSEIQKQQRFLLYRGFDRDVISKVFKEVKSSYLI"
     gene            2728..5310
                     /gene="alaS"
                     /locus_tag="JBH85_10545"
     CDS             2728..5310
                     /gene="alaS"
                     /locus_tag="JBH85_10545"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HAU0946639.1"
                     /translation="MKSSEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQ
                     FKDLFLGLETRSYQRAATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFK
                     REAIQYAWEFLTEVLHIPAERLWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFW
                     SMGDTGPCGPCTEIFYDHGPEVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHP
                     LPKPSVDTGMGLERLAAVIQGVHSNYEIDSFQYLIKAIAQLGQDIDLNHTSLKVIADH
                     IRSCSFLIVDGVLPSNEGRGYVLRRIIRRAVRHGNKLGLPSPFFSKLVQPLIDVMGDA
                     YPELINSKAHIERILQQEENQFTRTLEQGLRLLQDHIKNLQGQELSGEVAFKLYDTYG
                     FPIDLTADIIREQGLHIDMEAFNQLMQQQREQSQAASQFTTDYHAVSQLDHQSEFHGY
                     EKESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEFTF
                     QVDDTQKVGQAVVHYGKVIKGELTLDLLIHAQVDNIRRDAIRLNHTATHLLHAALKKI
                     VGQHVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIES
                     AKQSGAVALFGEKYSDAVRVLSMGDFSKELCGGTHARRTGDIGLFKIVAEYGIASGIR
                     RIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLS
                     EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTIEQ
                     NKMNVIAGVSKNIIGKAPSAAQLVRHLCGKGGGRDDMAQGGGGVPEDLNSKIKEIKEM
                     IEKI"
     gene            5401..5598
                     /locus_tag="JBH85_10550"
     CDS             5401..5598
                     /locus_tag="JBH85_10550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003632194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946640.1"
                     /translation="MNDLLNLIAVIVVFGVGLWLINVFIPMPGAIKSLLNVLVLIILI
                     IYILQFFGVIKTILPMIKILK"
     gene            5835..7031
                     /gene="mavB"
                     /locus_tag="JBH85_10555"
     CDS             5835..7031
                     /gene="mavB"
                     /locus_tag="JBH85_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavB"
                     /protein_id="HAU0946641.1"
                     /translation="MPPPYSTHVIVNVFRCVAQLVSQNPELLNWPGVFRLAGSREESE
                     KLLEQVINDNFSVGNLACYILEDGQINNLHLNNVLGMLPLVLKESVLLKTEDPLLKLF
                     MTELKNLLSSEKNNVENTDAIVQLLSKFIDSLLLSKILDHQRVGEILYHYCYLMHTAG
                     VFYETNLMTWENLAIIMAPHFTNEFGLYPAEDLLGLIQFTNQLKPILECFIAHPDSGI
                     PFKERHADKLEHLAKTRHTIVEKLTHMGSESRRIVVAPMKSLMLQASMLRAQIDTVET
                     QSKDSSLKKKDKKELNRQLEKLTEELEKLNIEISGLTSKIKKMNHGHAKLKEEIRVIS
                     RSEDAVSTHAAQQSGVSSSSSNSVRIQLGIFGNNSSSSAYLIEEQEEGEVTENEYSGL
                     DSAKLT"
     gene            complement(7216..8496)
                     /gene="rvfA"
                     /locus_tag="JBH85_10560"
     CDS             complement(7216..8496)
                     /gene="rvfA"
                     /locus_tag="JBH85_10560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RvfA"
                     /protein_id="HAU0946642.1"
                     /translation="MFKFIYCINQEHIMSITIHTWKGGTKGLGFKTPVKSTLFGGNVG
                     HAALELTWPANKQGDELAKKYAQAHGVIISKRTEIVGETQEEGRIMPKERVTYFAYFS
                     WWPGEQNGHYINSFNDDKDAEWRHEPDKKMHADWKNQIYGPQGMSEENTTDVKGILIK
                     NKNIQKLKTIQHSTLTADIAQDKAYNELLQHKEKLDEEYKSLHAKAVAYQKEKENAIR
                     EEREINPNFELLDEDISRMGDLPREFSILEAQLNLCIADFNERHLSSGKKPDSSVILP
                     TSMDETSLNHTLDTESILREMITLANSEKAYNFTKFNCSTSVCHIVKAGVDEKLKENL
                     SDNGFNINRYVTSYITTPTNVNALGLKLQDALLKLELAEHTKEAEQVQKPVANTISNR
                     FNEFKSRLQAVVSERNAHKDDTEEVTINNHNSLR"
BASE COUNT         2704 a         1369 c         1739 g         2697 t
ORIGIN      
        1 gtttgagttt ttatgtgatc tgattgatat ccagattaaa aaatatgttg agctcgcaaa
       61 acttaaagta ggtgaagatg cgataataaa cgccgctctc atatacgaag aggtgaatga
      121 attattagga ttcgcggaga agttattaaa ggaaatagaa accaattcaa aatccgactc
      181 aatggatatg accatttttg atcgtgtttt tgagcaagta aaattttatg tggagcaaga
      241 atatctgaga tcctatgcag aatggctgct tattgaaaat aactctaaag acacggtcta
      301 caatagaaca aaagagcaat tactcaggct ttcagaaatt aagagttttg atgataaagg
      361 tttttcacaa ccaagcactg aaattcaaca gcaatgtcaa catgatagtg ttcagatagt
      421 ttattccatt ttaaatttgg caagagaggt aagaaaaaat ccggatatgg ggtttgatga
      481 tagcatccca cataacaagc tcaatgtatt aagaagaaat gcaactacca gatatgttga
      541 attcggaaat gaaatagaca aattgcatca gcatagtgaa gaatttttgc aacagtcgag
      601 tcttggagtt ttcgacgccg aattagccta tgaatcggca ctatcaaagg caaaagacca
      661 tgatcttaaa ttaaatactt tgtttggtcg ttataaagaa aataaggaaa ccgcttctgt
      721 tcctcaatct ctctctttgg tcaataaggt agatgaggaa aatattatga cagaaaaaaa
      781 accttcaact gaagtgtctg ataataagac ccctttcttt tcaacaagca atttattatt
      841 tttcggtggt atagttttag ccgctgttat ttttgttccc agattgctta ctcatctcaa
      901 ggtcaataaa ttatgacaca gcattatgag tagttaacat tttcgttatt ttgattgtaa
      961 aaccttggtt tttatgtcgg attgtctata tatttttata ttgccccgtt accaagctaa
     1021 aaatcaaggt ttgaagttca aactgacaac accttcattt ttgaacaaat ggttattcca
     1081 cgtagcttat aataaaagac taatcatcag ctatcgtatg ctacttttat ttagtaatac
     1141 actaagatta ctgtttgctg ctcgctcaca tctgtgtgat aattttgttc ttgcacacat
     1201 tataatctgg aataaattat ggaagaaaat aaacaaaaag cactatcagc ggcgctttcg
     1261 caaattgaac gccaatttgg caaagggtct gtaatgcgta tgggagatag cacggtatca
     1321 cgggatattg aagcaatctc tacaggttca ttaggtcttg atattgcctt agggataggc
     1381 ggtttgccaa aaggccgtat tgttgaaatt tatggccctg agtcttctgg taaaaccacg
     1441 ctcactcttc aagtgatcgc tgaatgtcaa aaaatgggtg gtacagcagc atttatcgat
     1501 gcggaacatg ctctggatcc aagctatgct cagaaacttg gtgtgaaggt ggatgagctg
     1561 ttggtttctc agccggatac aggcgagcaa gctctggaaa ttactgatat gctggtgcgt
     1621 tctgcagcag ttgatgtcgt aataattgac tcggttgctg ccttgactcc caaagcagaa
     1681 attgagggag aaatgggcga ttcccatgtt ggtttacagg caagattgat gtcgcaagcc
     1741 ctgcgtaaat tgaccgctaa cattaaacgt tcgaacacac tggttatttt tattaatcaa
     1801 atacgtatga aaattggtgt gatgtttggt agccctgaaa ctactacagg gggcaatgct
     1861 ttgaagtttt atgcttcagt tcgtttggat attcgccgta ttggttcaat taaaaagggt
     1921 gaagaaatat taggcagtga aacccgagtt aaagtagtta aaaataaggt agcgccaccg
     1981 tttaaaatga ctgagtttga tattttatat aacgaaggta tatctcgtga gagtgaaatt
     2041 attaatctgg gtgttcaatt gaatttaatt gagaaatcag gtgcctggta tagctacaaa
     2101 caggaaaaaa tcgggcaggg caaagaaaat gtcagattat atttgaaaga aaatccccaa
     2161 gtcgctgcag agcttgaaca acaaatccgt actgagctct tggaaaaaaa gttatctgtg
     2221 ttggctagtt catcagaaga tctttttgag actatagatg actaaagcat tcgatagcgc
     2281 cttgcgtctg ttaaccaggc gcgagtatag cgctatggag ttatgtgata aactgaagca
     2341 gaaaggattt agcaccaatg atgttcaaaa tgctttgtat gaatgccaac gtcttgggta
     2401 tcaaagcgat gtgcgttttg tagaaaatta tatcagagta cgaattcatc aaggctatgg
     2461 ccctttaaag atcaggcagg aattaaaaaa caagggaata gatccagatc tcattcaaag
     2521 tgtgctgcat caagaaaaag acaattgggt caattatgct ttgcgggcat gggagaaaaa
     2581 atttaagaga caggatgatt tctcttatag tgaaatacaa aaacagcaac ggtttttgct
     2641 gtatcgaggg tttgataggg atgttatttc aaaggtattt aaagaggtta aatcttctta
     2701 cttaatttaa ctggtaaata ttaaaaaatg aaaagttctg aaattagaca agcattcctt
     2761 aactattttg ttcaacgcgg tcatcaaata gtagcttcta gctcattggt cccttcaaat
     2821 gatcccactt tactatttac caatgcaggt atggtgcaat tcaaggatct ttttttaggt
     2881 cttgaaactc gttcatatca gcgtgctgct acagcacagc gctgtgtgcg tgcaggtggt
     2941 aaacataatg atctggaaaa tgttggttat acggcgagac atcatacatt ttttgaaatg
     3001 ttgggtaatt ttagttttgg tgattatttt aaacgcgaag ctattcaata tgcttgggaa
     3061 ttcctaacag aagttttaca cataccggca gaacggctat gggttactgt ctataaagag
     3121 gatttggaag cagaagacat atggctaaag gaaatgaagg tatctcccga gcgattctct
     3181 cgatgtgggg aaaaagataa tttctggtca atgggggata cgggtccatg tggtccttgc
     3241 acagaaattt tttatgatca tggtcctgaa gtagcaggtg gtcccccggg cagtccagat
     3301 gaagatggag atcgttatat agaaatatgg aacctggtat tcatgcagtt taacagggac
     3361 agagagggac atttgcaccc cttgccaaag ccttctgtgg atactggtat gggattggaa
     3421 cgattagccg cagttattca aggtgtccat agtaattatg aaattgatag ttttcagtat
     3481 ttgattaaag caatagcaca attgggccag gatattgatt taaatcatac ttccttaaaa
     3541 gtgattgcag atcatattcg ttcctgctct tttttgatag ttgatggggt attgcctagt
     3601 aatgaaggca gaggatatgt attaagaagg attatccgca gagcagtcag acatgggaat
     3661 aaattaggct tacccagccc atttttttcc aaacttgttc agcctttgat tgatgttatg
     3721 ggggatgctt atcccgagct aatcaattcg aaagcgcata ttgaaaggat cttgcaacaa
     3781 gaagaaaatc agtttacccg tactttggaa caaggattgc gtttattaca agatcatatt
     3841 aaaaatttgc aaggccagga actatcagga gaagtggcat tcaagttgta tgatacttat
     3901 ggtttcccta tcgatttgac agcagacatc attcgtgaac aaggtttaca tattgatatg
     3961 gaagcattta atcaattgat gcaacaacaa agagaacagt ctcaagccgc cagtcagttt
     4021 actacagatt atcacgccgt gtctcaattg gatcatcagt ctgaatttca tgggtatgaa
     4081 aaagaatcca tggaagcaaa gattattgga ttacttcaag aaggtaatga agtgaaatct
     4141 attaataagg gagcaaaagg ggctgtaatt cttgatcata ccccatttta tgctgaaagt
     4201 ggtggtcagg taggagataa aggattactc ataggaaaag aatttacttt tcaagtcgat
     4261 gatacacaaa aagtagggca agctgtcgta cattatggaa aagtaattaa aggtgagctc
     4321 actttagatt tattaatcca tgcgcaagta gataacataa gacgggatgc aattcgattg
     4381 aatcataccg caactcattt gttacatgct gctcttaaaa aaattgtagg gcaacatgtt
     4441 caacaacgag gatccctggt ggatgctgaa agggcacgtt ttgacttttc tcatttcgag
     4501 gcattgactc ctcaacaaat tcagcaaatt gaagaggtag ttaatgcaca gatccgagct
     4561 aataatgaag taataactca agtaatggac attgaatcag ccaagcaaag tggtgctgtt
     4621 gctttattcg gggaaaaata ctccgacgca gtacgcgtat tatccatggg tgatttttcc
     4681 aaggagcttt gtggaggaac tcatgcacga cgtactggtg atataggtct tttcaaaatc
     4741 gtagcagaat atggtattgc cagcggtatc aggcggattg agatggttac gggtcgttat
     4801 gcattagcct gggtcaatga acagctggga tttatgaata atctggcagc tacccttaaa
     4861 acaacaccta atagtctaca ggaaaaagtt tctcaattat tgcttgataa taaaaatcaa
     4921 gaaaaaatga ttgcaaaact tttaagtgaa aaagcacaaa aatctggagc agatattctt
     4981 ggtgagatcg aggagatcaa gggtattaat ttattgatta agcagttaga gggtatggat
     5041 agccaaacca tgcgccatac catggatcaa ttaaaatcaa gaattgattc agcggtgatc
     5101 atattattta ctattgaaca gaataaaatg aatgtcattg ccggggtgag taagaatatt
     5161 attggcaaag caccaagtgc tgctcaatta gtaagacatc tttgtggtaa aggaggtggt
     5221 cgagatgata tggctcaagg tggtgggggt gttcctgaag atttgaacag taagatcaaa
     5281 gaaataaagg aaatgattga aaaaatttaa tatttccaga tttttctttt cgactgcaga
     5341 aaagcaagtt gtttttggat ttgctataat atagacactg gtttactaat gagcactatg
     5401 atgaatgact tgctgaattt aatcgcagtg atagtggttt ttggtgtagg cctatggtta
     5461 attaatgttt ttatacctat gcccggggct attaaaagtc tgttaaatgt attggtatta
     5521 attattttaa tcatttatat tttgcaattt tttggggtaa taaaaacaat attgccaatg
     5581 attaaaattt taaagtgatt tttgcttcct caaattaatc aggaacggcc taatagaata
     5641 ggccgttcct gattagacaa taatgatttt attctggaac acaagtttca tcgcaagtaa
     5701 cacttgagat gaattcaatt aatccaaaag acattaatgt ggctggaaaa attcaggttc
     5761 gtatttcatt aacaataatt gatttagttt tgatcccatg atattttgtt caaaatttaa
     5821 tctgggaatt tgttatgcca ccaccatata gtactcatgt gattgtcaat gtatttcgat
     5881 gtgttgccca attagtgtca caaaatccag agctattaaa ctggccagga gtatttcgat
     5941 tggctggatc tagagaagag tcagaaaagt tacttgagca agttattaat gacaatttta
     6001 gtgtggggaa tttagcgtgt tatattttag aagatggcca gataaataat ttacatctga
     6061 ataatgtttt aggaatgttg cctttagttc ttaaagaaag tgtcttgttg aaaactgaag
     6121 acccattgct caagcttttt atgacagaat taaaaaatct attgagttct gagaagaata
     6181 atgttgaaaa taccgacgca atagtacagt tgctgagtaa gtttattgac tctttattgc
     6241 tttcaaaaat acttgatcat caacgtgttg gagaaattct ttaccactat tgttacctaa
     6301 tgcatacagc aggggttttt tatgaaacta atctcatgac atgggaaaat cttgctatta
     6361 ttatggcccc tcattttact aatgaatttg gtttataccc tgcagaagat ttactgggtt
     6421 taatacaatt tactaatcag ttaaaaccca tcctggaatg ttttattgcg catcctgata
     6481 gcggaatccc ttttaaagaa aggcatgccg ataaattaga gcacttggct aaaactcgtc
     6541 atactatcgt tgaaaaatta acgcatatgg gaagtgaatc cagaagaata gttgtggctc
     6601 ctatgaaaag tttgatgctg caagcatcta tgttgagagc ccagattgat actgtagaaa
     6661 ctcaatcgaa ggattcctct cttaaaaaga aggataaaaa ggaattaaat agacagttag
     6721 aaaaattaac agaagaatta gaaaaactga atatagaaat ttctggatta acaagcaaaa
     6781 ttaaaaaaat gaaccatggc catgcgaagc taaaagaaga aattagagtg atatcgcgct
     6841 ctgaggatgc tgtaagtact catgctgccc aacaatcagg agtatcatca agcagtagta
     6901 actcagtcag aattcagtta ggaatttttg gtaacaacag ttcttcatct gcctatttga
     6961 tagaggaaca ggaagaaggc gaagttactg aaaatgaata tagtggctta gatagtgcaa
     7021 agctgactta aattcaatag tttttaattg agatctcttg ggcggtaaaa tgtgttgtgg
     7081 tcgtactcca atgcaaactt tggtagagga taaacaaatc tggatggaaa aatttataaa
     7141 ctaaatttga cctgacagac acttcttgaa aaaccggtaa ctgtcagatc aagtttgaac
     7201 tactacattt aaacactacc tcagggaatt atgattatta atcgttactt cttcggtgtc
     7261 atctttatgc gcattccgct ccgatactac ggcttgcagt cttgacttaa attcattaaa
     7321 acgattactt atcgtattag ccactggctt ttgtacctgt tctgcttcct ttgtatgttc
     7381 tgctagttca agcttaagca gcgcatcttg taattttaat cctaaagcat ttacgttggt
     7441 tggagtggtg atataggaag tcacataacg atttatatta aacccattat cgcttaaatt
     7501 ttcctttaat ttttcatcca ctcctgcttt cacaatatgg caaaccgagg tagagcaatt
     7561 aaatttggta aaattgtaag ctttttcact gttcgctaga gtgatcattt ctcgtaaaat
     7621 gctttccgta tctaaggtat gatttaaact ggtttcatcc atagaggtag gtaaaatcac
     7681 gcttgaatca ggtttttttc ctgaactcag atgtctttca ttaaaatctg cgatgcatag
     7741 attcaattgc gcttctaaaa ttgagaactc tcttggaaga tctcccattc tagaaatatc
     7801 ttcgtcaagc agttcaaaat taggatttat ttctctttct tctcgtatag cattttcctt
     7861 ttctttttga tatgcgactg ctttcgcatg taatgattta tattcttcgt ctaatttttc
     7921 tttatgttgt agaagctcat tataagcttt atcctgagct atatcagctg tcagagtact
     7981 gtgctgaata gtttttaatt tttgtatgtt tttattttta atcagtattc ccttaacgtc
     8041 tgttgtattt tcttcactca ttccctgtgg gccatagatt tgatttttcc aatcagcatg
     8101 cattttttta tcgggctcgt gtctccattc agcgtcctta tcgtcgttga aagaattaat
     8161 ataatggcca ttttgctctc ctggccacca gctgaaatag gcaaagtagg ttactcgctc
     8221 ttttggcatg atcctacctt cttcttgagt ttctcctaca atttcagttc ttttactaat
     8281 tattacgcca tgggcttgtg cgtatttctt tgctaattca tctccttgtt tattagctgg
     8341 ccaagttaat tctaaagcag cgtgtcccac attaccacca aataaagtag attttacagg
     8401 ggttttaaag cctaatcctt tagtacctcc tttccaagta tgaatagtaa ttgacatgat
     8461 atgctcttgg ttaatgcaat aaataaattt aaacatattg attattagt
//
LOCUS       DACVWI010000126         8479 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.126, whole genome shotgun sequence.
ACCESSION   DACVWI010000126 DACVWI010000000
VERSION     DACVWI010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8479
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.126"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(151..1494)
                     /gene="hslU"
                     /locus_tag="JBH85_10565"
     CDS             complement(151..1494)
                     /gene="hslU"
                     /locus_tag="JBH85_10565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HAU0946643.1"
                     /translation="MMKANNMVMTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMK
                     IKDPVLRNEIMPKNILMIGPTGVGKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDV
                     DSIIRDLTDMAIKQEREFAMKKVEHLAEDAAEERILDVLLPPARGTLTPGEKNTTARQ
                     VFRKQLREGELNDNEIEIEVAATPVGIEIMAPPGMEEMTSQLQSMFQQVGSYRTKTRK
                     MTVAKAMKILREEEAAKLINEEDIKLKAIESVEQNGIVFIDELDKIAKRSDTVSGGDV
                     SREGVQRDLLPLVEGTTVSTKYGMVKSDHILFIASGAFHVAKPSDLIAELQGRLPIRV
                     ELSALSVEDFVRILTEPSASLTLQYSALMETEGLTLTFDETGIRRIAEVAWQVNERTE
                     NIGARRLYTVMERLLEVVSFEATDKAGETVHVDKAYVDKNLGQLIADEDLARYIL"
     gene            complement(1478..2026)
                     /gene="hslV"
                     /locus_tag="JBH85_10570"
     CDS             complement(1478..2026)
                     /gene="hslV"
                     /locus_tag="JBH85_10570"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HAU0946644.1"
                     /translation="MEQFHGTTILSVRRGNQVVIGGDGQVTLGNTVMKGNARKVRRLY
                     KDKVIAGFAGGTADAFTLFERFEAKLEMHQGHLIRAAVELAKDWRTDRILRRLEAVLA
                     VADSKASLIITGNGDVIEPEESLIAIGSGGPFAQAAARALMENTQLSAKEIVQKALTI
                     AGDICIYTNNNLTIEELNDEGK"
     gene            complement(2230..3453)
                     /locus_tag="JBH85_10575"
     CDS             complement(2230..3453)
                     /locus_tag="JBH85_10575"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HAU0946645.1"
                     /translation="MTGRVCVLVMDSFGIGASLDAARYGDVGANTLVHIYEACKRGEC
                     DIDGVRKGSLMLPNLASKGLYHAAMASSGLPFIDLSALAIPSGYYGYAVEQSLGKDTP
                     SGHWEMAGVPVTFEWGYFPDKPYCFPEELISEFIKQCNLPGVLGEKHASGTIIIDELG
                     EEHIRTGKPIVYTSADSVFQIAAHEEAFGLQRLYDICKIARNLVDKYQIGRVIARPFA
                     GKPGSFKRTGNRKDYATPPPEKTLLDFLKEDGREVIAIGKIADIYAHQGVTQEIKADG
                     NMALFDATLSAMKTAPQGSLVFTNFVDFDSSYGHRRDVAGYAHALEQFDARLPELEVL
                     LQPNDMVFIAADHGCDPTFPGSDHTREHIPVLMFGPQVNSKFIGRRDCFADIGQSIAE
                     HLQLSSPLAHGVSFL"
     gene            complement(3450..4733)
                     /locus_tag="JBH85_10580"
     CDS             complement(3450..4733)
                     /locus_tag="JBH85_10580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946646.1"
                     /translation="MQVVDEFKAFDVKASLMPWLVCFAATMFFFYEFIQGNMFASIAA
                     NIMQDFQIQADKMAYLSSIYYLANVIFLFIAGMVLDRFSIKNTILIAMFLCVISTFIL
                     SYSDSFYVALFCRFVTGIGSAFCFLGPVRLASHWFPPQRMALVTGAIVTVAMTGGMLA
                     QYPLTKLVLHVGWRQAVQDVGILGLAMLVLMFFWIKERPQVAIKKEGKPINVLVAARK
                     AYLNAQNLRAALYTSLMNMAIAVFGAMMGTLYLEQRLGISPDQAAMINGMLFFGAIIG
                     SPLMGWISDKVGLRVLPMKGGVLASLLILLGVLYLPVSVTMMAVLFFLLGLFTSAQVI
                     SYALVAESSPPMMTATAVSVVSILTQGGYLIYQNLFSALLTNYGDVRLINGVPVYLLE
                     AYQHAAIILPIGLLIALLLLFGLKETRCQQVGHTV"
     gene            complement(4746..6017)
                     /locus_tag="JBH85_10585"
     CDS             complement(4746..6017)
                     /locus_tag="JBH85_10585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946647.1"
                     /translation="MVSHSVAVESRTFVPRGDFMAWVVCLSAGLFFLYEFFQLNIFDV
                     INQSLREDFHIDATQLSWMSSTYLWADILFLLPAGLILDRFSTRKVILTAMFVCVVGT
                     IGFAVTESFFLASFFHFLSGIGNAFCFLSCVVLVSHWFPPRRQALVIGSLVTMAFIGG
                     MMAHTPFAYLNDLFGWRRALLIDGVVGAFLILWIYMIVQDRPEESPAHKLTNEGQILS
                     SFMKALSNKQNWLAGLYTSLLNLPIMVLCALWGASYLQVAHHLPDIAASNVVSLIFMG
                     SVVGCPLVGWLSDTQGRRKPLMIFGAIATLITTIPLFINVVLTQMSLSILFFALGLFT
                     STQVISYPLVAESNQPENTGAATGIASVIIMGGGGVAQVLFGWLMTHHAGTNVTAYTV
                     SDFQFAMWMFPVAAIAGLVAVLMTRETYCKR"
     gene            complement(6065..6730)
                     /locus_tag="JBH85_10590"
     CDS             complement(6065..6730)
                     /locus_tag="JBH85_10590"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HAU0946648.1"
                     /translation="MSKNKEDGNNLSMAKLYFYYAAMNAGKSTVLLQSSYNYRERGMQ
                     TLLFTPAIDTRFQYGTICSRIGLSEQAYAFNNSDNLYVLTQEFQLQTQKYSCVLIDEA
                     QFLTREQVYQLTEITDQMSIPVLAYGLRTDFRGELFPGSQFLLAWADELIELKTICHC
                     GRKAIMNMRIDENGQAVVEGEQVLIGGNESYVATCRLHYKLGEAGKTFPRNKLFNKDT
                     NTF"
     gene            complement(6826..8307)
                     /locus_tag="JBH85_10595"
     CDS             complement(6826..8307)
                     /locus_tag="JBH85_10595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HAU0946649.1"
                     /translation="MSFQTDKEIQQKFFSYTLFVLVVLLICRLIANYFFPLFDTTESR
                     YAEIARKMLETGNWVTLQQDYGVPFWAKPPLSIWLSAFFMQLLGVNEFAVRLPGLLLS
                     VGVLWLVWGVAKKQSGSMAALFSLLTLAGSLYFFLDAGTVMTDPALLFCTTLASVSFW
                     HAMVYENKIWSYAFFAGLGLGLLAKGPIAVVLVGMVVFFWVLLRNEWLNLWKRLPWFK
                     GTFLLLLIAMPWYVLAELRTPGFLNYFILGEHFHRFLTPGWSGDKYGIVHHVPKGTIW
                     LYAIAGIFPWNIIAGGWLVKHGKMLPSLCQSEDGWLSYLTLWMITPLLFFTFASNIIY
                     PYVFPSLPAFALLFAEILNRLNLELKHLKWVLISSLLCGVLFLAVAFVLGLKPDVVPN
                     THKPIITAWLNQNPTAGSHLVYWGYKTDFSAEFYSEGQVKSVKNQNDLCKLLSNRLEN
                     YLVINSKETQQIPGELLARLTLIDTFRVHRDTLILFHAPVLTC"
BASE COUNT         2713 a         1957 c         1545 g         2264 t
ORIGIN      
        1 attagcattg ccttgctctt tgtaaaagta aattgcatgg ttggacactc agaatcacat
       61 gagggatatc tctttttcga gaaatatccc ccacaaaaag ttgatctgtt aaaaagattt
      121 cattcttgat ttcagtttaa ctattctgga ttacaaaata tagcgagcca aatcctcatc
      181 agcgattagt tggcctaaat tcttatcgac ataggcttta tcaacatgca ctgtttcgcc
      241 agctttatca gtcgcttcaa atgaaaccac ttccagtaag cgttccatga cggtatataa
      301 tcttcttgct ccgatatttt ccgtacgctc attcacttgc caggctactt cagcaatacg
      361 tcgaattcct gtttcatcaa aggtaagagt caatccttcg gtttccatca aagcggaata
      421 ctgtaaagtt aaagaggcgc ttggctcagt aaggattcgt acaaaatctt ccacagagag
      481 ggctgacaac tcgacacgta tcggcagacg cccttgcaat tcagcaatca agtcagaagg
      541 tttagctaca tgaaaagcac ctgaagcaat gaataaaata tgatcggatt ttaccatgcc
      601 gtattttgtt gaaacggtag ttccttcaac taatggcaat aaatctcgct gaacaccctc
      661 acgtgataca tctcccccac ttacagtatc ggagcgtttg gcaattttat ccaactcatc
      721 aatgaacact attccatttt gctcaacact ttcaatcgct tttaacttga tatcttcttc
      781 gttaattaat tttgccgctt cttcctctct caaaattttc attgccttgg caacggtcat
      841 ttttcgagtt ttcgttctgt agcttccaac ttgttgaaac atagactgca attggctagt
      901 catctcttcc atacctggag gagccataat ttcaatgcca acaggcgttg ctgctacttc
      961 aatttcaatt tcattatcat taagctcacc ttcgcgtaat tgcttacgaa acacttgacg
     1021 agctgtcgtg tttttctcac caggagttaa tgttcctcga gcaggaggga gtaaaacatc
     1081 caggattcgt tcttcagccg catcttctgc caggtgctcc acttttttca tggcaaattc
     1141 acgctcttgc ttgattgcca tatctgttaa gtcacgaatg atcgaatcaa catcacgccc
     1201 cacatatccc acttccgtga atttggttgc ttctacttta ataaatggag ctttagccaa
     1261 attagccaaa cgtcttgcaa tctccgtctt accaacaccg gtagggccta tcatcaaaat
     1321 atttttaggc attatctcgt tgcgcaatac tggatctttg attttcattc gacgccaacg
     1381 atttcgtaat gcaatggcta cggcacgttt tgcatcatct tgaccaataa tgtgcttatc
     1441 taattcttga actatctctc gaggggtcat gaccatatta tttgccttca tcatttaatt
     1501 cttctatggt taaattattg ttagtataaa tacaaatgtc gccagcgatt gttaaagctt
     1561 tctggacaat ctccttggca gataactgtg tgttttccat aagggctctg gctgcagctt
     1621 gagcaaaggg accgccagag ccgattgcaa ttaaactttc ttcgggctca atgacatcgc
     1681 cattaccggt aataattaaa gaagccttgc tatccgctac cgcaagcact gcctctaatc
     1741 gacgaagaat tctatcggtt cgccaatctt tagccaattc aacagctgct ctaatcaaat
     1801 gcccctgatg catttccagt tttgcttcaa accgttcgaa aagagtaaaa gcatctgctg
     1861 ttccacctgc aaaaccagca atcactttat ctttatacaa tctccgaact ttacgtgcat
     1921 tgcctttcat cacggtatta cctagagtaa cttgcccatc accgccaatg acaacctgat
     1981 taccgcgtcg tactgaaagt attgttgtcc catgaaattg ttccaaaata aaatcctcaa
     2041 ttacattgca gaaatgtcta aatggggatc attggtaaaa aatcaatagg gatttagaga
     2101 aaaattaagt gttcttaata tctgaaaata ctaatcgtca tgtccactcc cttacggtcg
     2161 tgactcggat tgtcgtgact cggattatcg ttcaaaccga gccacgaccg taagggagtg
     2221 gatataaaat tataaaaaag aaacaccatg agcgagtggc gaggataatt gcaaatgctc
     2281 cgcaatactt tgaccaatat ctgcgaaaca atctctccgt ccaataaatt tgctatttac
     2341 ctgagggcca aacatcaata ctggaatatg ctcgcgggta tgatcagatc cagggaatgt
     2401 aggatcacat ccgtgatctg ctgcgataaa aaccatgtca ttgggttgta agagaacctc
     2461 caactctggc agacgcgcat cgaattgctc tagcgcatgc gcataaccag ctacatcacg
     2521 cctatgccca taagaagaat caaaatcaac aaaattggta aataccaagc taccttgtgg
     2581 ggctgttttc attgcggata aagtggcatc aaacaaagcc atattgccat cggctttgat
     2641 ttcttgcgta accccttgat gagcatagat gtctgcaatc ttacctatag caatcacttc
     2701 ccgaccatct tcctttagaa aatcaagcaa tgttttttcc ggaggaggtg tagcgtaatc
     2761 ttttctatta cctgttctct taaatgagcc cggcttacct gcaaaaggac gagcaatcac
     2821 tcgaccaatt tgatatttat ctaccaaatt tcgagcaatt ttgcagatat catagaggcg
     2881 ttgtaaacca aatgcctctt catgtgcggc aatttgaaat acgctatcgg cagaagtata
     2941 tacaatcggc ttaccggtac gaatatgctc ctcacccaac tcgtctataa tgatggttcc
     3001 cgaagcatgc ttttctccca aaactcctgg caaattacac tgcttaatga attctgaaat
     3061 taattcttca gggaaacagt aaggtttatc aggaaaatat ccccactcga aagtcacagg
     3121 caccccagcc atttcccaat gaccactggg agtatctttg cccaagcttt gttccactgc
     3181 atatccataa tacccagaag gaatagctaa agcagataaa tcgataaagg gtaacccgga
     3241 actggccata gcagcatggt aaagcccctt gctcgcaaga tttggaagca ttaaagagcc
     3301 tttgcgaacc ccgtctatat cgcactcacc tcgtttacac gcttcataaa tgtgaaccaa
     3361 ggtgttagca cccacatctc cataccgagc ggcatcaagg ctggctccga tgccaaagga
     3421 atccattact aatacgcaaa ctcgtccggt catactgtat gcccaacttg ttggcaacga
     3481 gtttctttta atccgaacaa taaaagtaat gcgatcaata atcctatggg taaaatgatt
     3541 gctgcatgct gatacgcttc gagtaaataa actggcacac cattaatcaa acgaacatcg
     3601 ccataattcg tcaataaagc actaaacagg ttttgataaa taagataccc gccttgagtt
     3661 aatatggaca cgacactgac agccgttgca gtcatcatgg gagggctgct ttcagcaacc
     3721 agggcatagc taatgacttg agctgaagta aataatccta ataaaaagaa caatacggcc
     3781 atcattgtca ctgaaacagg taaataaagt actcccagca aaataagtaa agaggcaagg
     3841 actccccctt tcataggcag cacacgcaac cctaccttat cagatatcca ccccatcaaa
     3901 ggtgaaccta taatggctcc aaaaaacaac ataccgttga tcatagctgc ctgatcaggg
     3961 ctaatgccta atctctgttc aagatataaa gtccccatca tggcgccaaa tacagcaatg
     4021 gccatgttca taagactagt gtataaggct gctcgcaaat tttgagcatt taagtaggct
     4081 tttcttgcag ccacaagcac attgataggt tttccttctt ttttgattgc gacttgaggt
     4141 ctttctttaa tccaaaaaaa catgagaact aacatggcca agcccaatat ccctacgtct
     4201 tgaactgctt ggcgccatcc aacatgtaga accagtttag ttaaggggta ttgcgccagc
     4261 attcctcctg tcattgcaac agttacaatc gcgccagtca ctaaagccat acgctgggga
     4321 ggaaaccaat gagacgccaa acgcacggga cccaaaaagc aaaatgcgct acctattcca
     4381 gtcacaaacc tgcaaaataa agccacataa aacgaatctg agtaggagag gataaacgta
     4441 ctaatcacac acagaaacat agctattaaa atggtgtttt tgattgaaaa cctgtccaaa
     4501 accattccgg caataaacag aaaaatcaca tttgccaagt aatagatgct ggataagtaa
     4561 gccattttat ctgcttgaat ctgaaaatcc tgcatgatat ttgccgcaat ggaagcaaac
     4621 atatttccct gaataaattc ataaaagaaa aacatggttg ctgcaaaaca aaccagccat
     4681 ggcattagcg atgctttaac atcgaatgct ttaaattcat ccactacctg cattatttct
     4741 cctctctatc gcttgcagta tgtttcacga gtcatgagca cagcaaccag tcctgcaatt
     4801 gcggcaacag gaaacatcca catggcaaat tgaaaatcgc taaccgtata tgccgtaaca
     4861 tttgttcccg cgtgatgtgt cataagccaa ccaaacagaa cttgagcaac accgcccccg
     4921 cccataataa tgacagaagc aattccagtt gcagcaccag tattttctgg ctgattgctt
     4981 tcagcaacca gggggtaaga aatcacttgc gtgctggtaa ataatcccaa agcaaaaaag
     5041 aggatactga gactcatttg agtcagaacc acattgataa atagaggaat agtagtaatc
     5101 aaagtagcta tcgccccgaa aatcattaag ggtttgcgac gtccctgagt atcggataac
     5161 caaccaacca atgggcaacc aacaacactc cccatgaaaa taaggctgac gacattgctt
     5221 gccgcaatat caggcaaatg atgagccacc tgcaggtaac ttgcacccca tagggcacac
     5281 aaaaccataa tgggtaaatt aagcagagag gtatacaagc ctgccagcca gttttgttta
     5341 ttggatagag ctttcatgaa actcgatagt atttgtcctt cattggttaa tttatgtgct
     5401 ggtgactctt caggcctgtc ttgcacaatc atgtaaatcc ataatattaa aaaagctcca
     5461 acaaccccat caattaacaa tgcacgtcgc cagccaaaca gatcattcaa ataagcaaaa
     5521 ggggtgtgcg ccatcatacc accaataaat gccatggtaa ctaatgagcc aatgactaat
     5581 gcctgtcttc tgggaggaaa ccaatgagag accaaaacaa cacaagataa aaagcaaaac
     5641 gcattaccta ttcctgagag aaaatggaaa aatgaggcga gaaaaaatga ttccgtaact
     5701 gcaaaaccta ttgttccaac aacacaaaca aacattgcgg tgagaataac tttcctggtt
     5761 gaaaacctgt cgagaataag gccagctggt aaaagaaaaa gaatatcagc ccataaataa
     5821 gtgctcgaca tccaacttag ttgggtggca tctatatgaa aatcttctcg aagcgactga
     5881 ttaataacat caaaaatatt gagttgaaaa aactcatata aaaagaaaag ccccgcagaa
     5941 agacacacta cccaagccat aaagtcacca cggggaacaa aagttctcga ctccactgcg
     6001 acagaatgcg acaccacctc tcctttattt aaggcctaaa aactgcggca aattatatca
     6061 aaatttaaaa agtattggta tctttattga acaatttatt tcttggaaac gtcttccctg
     6121 cttcacctaa tttataatgc aaccgacagg tagcaacata ggattcattg ccgcctatca
     6181 atacctgctc cccctcaaca acagcttgcc cattttcatc aattctcata ttcataattg
     6241 ctttacggcc acaatgacaa attgtcttta attcgattaa ctcatctgcc caagccagta
     6301 aaaattgact tcccggaaat aactcgcctc taaagtcagt gcgtaaccca taagctagta
     6361 ctggaataga catttgatcg gttatttccg ttaattgata cacttgctct cgagttaaaa
     6421 attgagcctc gtcaatcagg acacaagagt atttctgagt ttgtagttga aattcttgag
     6481 ttaaaacata caggttatcc gaattgttaa aagcataagc ctgttcggat aaaccgatac
     6541 gtgaacagat agttccatat tggaaacgtg tatcgatggc tggggtaaac aacagagttt
     6601 gcataccgcg ttctctgtaa ttataactgg actgcagtaa caccgtactt ttacctgcat
     6661 tcatagccgc atagtagaaa tataattttg ccatagatag attatttcca tcctctttgt
     6721 ttttactcag gacttacgaa aaaccccaag gtcaaggcaa aaaagaggtt ggagtttttc
     6781 gtaagtccta ttactttact acgagatgaa attggaaacc actgctcaac aagtcagcac
     6841 tggggcatgg aacaatatta aagtatcccg atgaactctg aacgtgtcga tgagtgtgag
     6901 tcttgcgagt aattccccgg gaatctgctg agtttcttta ctattgataa ccaaatagtt
     6961 ttccaatcgg ttagagagaa gtttgcataa atcgttctga tttttaaccg atttcacttg
     7021 accttccgag taaaactcag cagagaaatc cgtcttgtat ccccaataaa caaggtgact
     7081 gcctgctgtt gggttctgat tcagccatgc agtaataatc ggcttatgcg tattaggcac
     7141 aacgtctggt tttaaaccaa gtacaaaagc cactgccaaa aataaaactc cacagagtaa
     7201 tgaggagata aggacccact tcaaatgttt caattccaaa ttcaagcgat tcaaaatttc
     7261 agcaaaaagc aaagcaaatg cgggtagaga aggaaacaca taggggtata tgatattgct
     7321 ggcaaaagtg aaaaaaagaa gcggagtaat catccaaaga gttaaatagc ttaaccatcc
     7381 atcttcactt tggcacagag agggcaacat ttttccatgt ttcaccagcc agccgcctgc
     7441 tataatattc caaggaaaga tacctgctat agcatataac catatcgttc ctttaggcac
     7501 atggtgcact atcccgtatt tatcaccaga ccagccaggg gttaaaaatc gatggaaatg
     7561 ctctcccagg ataaaataat ttaaaaatcc tggggttcgt aattcagcca gaacatacca
     7621 gggcatagca attagcaaaa gaagaaatgt gcctttaaac cacggtaatc tcttccatag
     7681 attaagccat tcattgcgta gcagaaccca gaaaaataca accattccga ccagtaccac
     7741 agcaattggg ccttttgcta ataaacccag gcccaatcct gcgaaaaatg cataagacca
     7801 tattttattt tcataaacca tggcatgcca aaacgagaca cttgcaagcg tggtacaaaa
     7861 aagtagggca ggatcagtca tcacggtccc tgcatcaagg aaaaaataaa gcgatcctgc
     7921 cagtgttaat agggaaaaga gcgcagccat tgagccactc tgtttttttg ccactcccca
     7981 aaccaaccat aaaacaccaa cagagagcaa aagacctggc aggcggactg cgaattcatt
     8041 aacacccaat agttgcataa aaaaagcaga caaccagatt gataaaggtg gtttagccca
     8101 aaatggaaca ccataatcct gctgcaaagt cacccagttc cctgtttcca gcattttgcg
     8161 tgcaatttca gcgtagcggg attcggtcgt atcaaacaaa ggaaaaaaat aattggcaat
     8221 caagcggcat atcagcagaa caaccaacac aaacaaggtg taactaaaga atttttgctg
     8281 aatctcttta tctgtttgaa aactcaaaat atacctcttt tatttaaaca actaaatcgg
     8341 agtaccattt agtgaagcat tggagtgagc ctgtggtatc tcggacatag cgttcccagg
     8401 aataaattcc ataaagccaa ttattcccta acctcccttt tccttgtgat agatcttcac
     8461 ccccaagcca ggtttctta
//
LOCUS       DACVWI010000127         8415 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.127, whole genome shotgun sequence.
ACCESSION   DACVWI010000127 DACVWI010000000
VERSION     DACVWI010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8415
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.127"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            59..1288
                     /locus_tag="JBH85_10600"
     CDS             59..1288
                     /locus_tag="JBH85_10600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HAU0946650.1"
                     /translation="MKKRVVITGMEITSSIGSGIDKFWLAASQGQCGIKRIQSYDPSP
                     YSTQIAGEITDLSLDHLPEFNKSKRYPRAAQYALFCAHHAIEKAGLEQAELNAAGTFI
                     GTSIGGQPELEAGYRLFFTDSWKKIPPLSVIRGMPNSIANHIAIAFGIGGPNSTISNA
                     CVSSGEAIGMAYQQIAHGNLTTALCGGTESLVWESVMAAWCKLRVMSTNNENPSQASR
                     PFDLNRDGMVMADGAGILILEELQQAKARGAQILGEIIGYGASCDAFHVTAPNSQGQA
                     RAIVAALNDAKLSINDVHYINAHGTGTQLNDSTETETIKMVFGKRAYDIPITAQKAMT
                     GHAIGAAGAMEIIATTLSLQKNTLLPTINLHTPDPACDLDYVPNAAREKTIDIALSNH
                     FAFGGANAALVLRKYIS"
     gene            complement(1285..2067)
                     /locus_tag="JBH85_10605"
     CDS             complement(1285..2067)
                     /locus_tag="JBH85_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HAU0946651.1"
                     /translation="MLKKILLTGLCVLFSMNLSASEPIYDEEIPLLWSSIITVSGGPS
                     WATPGQNQYIYPMSPVYINNFNPNLPPNYYLYFTHDSPTTILANGEIFFGLQRAINPQ
                     MIGQLGLGVAGVSDAKVTGDVNLNGLLNVYTYDYKVNHARVELKGKLIGSAFTPVQPY
                     LSGSFGIAFNNAHDYRTLSINQFLFPAPWFASNTTYAFAYSVGAGVQKMLNRNWQVGV
                     GYEFADLGKSYLGGDGVNITKGPRLTHLYNNQLLFSVSYLYS"
     gene            2316..3386
                     /gene="lpxD"
                     /locus_tag="JBH85_10610"
     CDS             2316..3386
                     /gene="lpxD"
                     /locus_tag="JBH85_10610"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HAU0946652.1"
                     /translation="MKGKPMNSSLRDIANLVQGMVIGNDAITVSTLSPIDNILPGSLV
                     FAEGEDNIKLAENSEAAAILIGQGTIDSPKPLIQVKNPFKAFIALLNHFYPPRRISPG
                     VHPTAVIGAEVQLGDEVYVGPFVVIESGSIIGNHSVLKSHIHIGHNVVIGDHTTIHPQ
                     VTIYDNCRIGSNVTIHASTVIGSDGFGYTFVDGQHLKVPHSGYVVIENNVEIGANTAI
                     DKATLGATVIGEGTKIDNLVQIAHSVKLGKHNIICAFTGIAGSTTTGNNVIFAANVGV
                     SDHVHIEDEVILGARTGVPPHKHLKKGTVYLGNPAKPKDVAIKHELSVNRIPLIRKNI
                     KSLTEQVAVINKKLDIKAKEVE"
     gene            3389..6079
                     /gene="polA"
                     /locus_tag="JBH85_10615"
     CDS             3389..6079
                     /gene="polA"
                     /locus_tag="JBH85_10615"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HAU0946653.1"
                     /translation="MKPPLILIDGSSYFFRAFHALPPLTNSKGQPTGAIYGVANMIKK
                     IIKDYQPEEIAVVFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPL
                     LIIDGVEADDVIGTLAKQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDG
                     VKAKFGVTPEQIIDYLTLIGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIG
                     GKIGEYLRASIPHLPLSKKLVTIKTDLDLPLNLNQLMPKPADSEQLIKLTRELEFKSW
                     LKELLQEEENQKSPKEMDASNNKSYEIITTHKQLNHWLNKLEQSQQFCIDTETTNLDV
                     MQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKPILENPAIGKIGQNIKY
                     DYSVLKNYGITLKGIGYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGA
                     KQLRFDQIPVVKAGIYAAEDADITLRLHHKLYPMLDESLRNVLHDIEIPLLTVLADME
                     MHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVV
                     AKTPTGQPSTAESVLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHT
                     SYNQAVAATGRLSSSDPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMA
                     HLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGL
                     AKQIGVERQDAQHYIDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSR
                     NLMRQKAAERTAINGPMQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEV
                     RKEAVEECRAIIHKLMEQTVKLSVPLVVSIGTGSNWDDAH"
     gene            complement(6109..6561)
                     /locus_tag="JBH85_10620"
     CDS             complement(6109..6561)
                     /locus_tag="JBH85_10620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0946654.1"
                     /translation="MRVLIVEDSAFNAFCLRRLLESVVASISVTIVNNSQAALSFVNN
                     YCPDIVIVDGDLGASPDEMNCNGPELAGILLQKYPQLPIVAWSDSDAMRENFIKVFKS
                     HGLFLNEYNTWPKVIGLERIHKTWSYYFGEFIGGQNPSFASQTSINYY"
     gene            complement(6676..7017)
                     /locus_tag="JBH85_10625"
     CDS             complement(6676..7017)
                     /locus_tag="JBH85_10625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HAU0946655.1"
                     /translation="MNQLPNCPKCLSEYCYEDGDVLICPECTHEWPKNSNNNDEESAK
                     IIKDANGNLLQNGDTITVVKDLKIKGSSQVIKVGTKVKNIRLVDGDHDIDCRIDGIGA
                     MKLKSQFVKKI"
     gene            complement(7178..8371)
                     /locus_tag="JBH85_10630"
     CDS             complement(7178..8371)
                     /locus_tag="JBH85_10630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAU0946656.1"
                     /translation="MPKVIIFTDFDGTVTGKSGNETVFTEFYQSLLQGYKKDVEQDYK
                     NTPMKDPIEAQALFEAKYGKYNENFDHDQQDVDFLMSPEAVAFFHEVLKNDDVTVNIV
                     TKNRAEYIKAVFKYQGFSDEEISKLTILESGYKFNDVNSRLNHPTERANRVYILDDSP
                     TDYAEMLRAVKGKGYNEEEIRGYRKNPGEFEWSQYLEDVREMFPPKENSPEEVQLPDE
                     QGDEVSIGEETPVLLQEDNLSRREETATVLSNQPVPSSDFRTLKIMGAFAGIGFGFGF
                     ALGVTLVATGVFAPSGVGLLGALTLGAISGTGTAALSSAIGFVVAEGTEITSESVSEE
                     AVPAVKQSSHEAMRGLGGSQLLSTNNIHPVGHFPSILSRRTPTKGKEEQCQEEYVLTN
                     PLHNS"
BASE COUNT         2676 a         1771 c         1634 g         2334 t
ORIGIN      
        1 attagtattg cgaatggcga tagaggaagg cttgttttat caaaaataag gataattaat
       61 gaaaaaaagg gttgttatta ctggtatgga aataacgtca tccataggat cgggaattga
      121 taaattttgg cttgctgcat ctcaaggtca atgcggaatt aaacgcatcc aatcttatga
      181 tccatccccc tattcgaccc aaatagcagg tgagattaca gacttatctc tcgaccatct
      241 ccccgaattc aacaaaagca aacgttatcc tcgcgctgct cagtatgcat tattttgcgc
      301 acatcatgcc atcgagaaag cagggcttga gcaagctgag ctcaatgcag caggcacctt
      361 tataggcaca agcattggcg gtcaacctga actggaagca ggttacaggt tattctttac
      421 agacagctgg aagaaaatcc cccctcttag cgtgattagg gggatgccca attcaatcgc
      481 caatcatatc gcaattgctt ttggcatagg tggaccaaac tcaaccattt ccaatgcctg
      541 tgtttcatcc ggggaagcga taggcatggc ttaccaacaa attgcccatg gcaatttgac
      601 cacagctctt tgcggaggaa cagaatcttt agtctgggaa tcggttatgg ctgcctggtg
      661 taagcttaga gtaatgtcaa ctaacaatga aaatccctca caagccagca gaccgtttga
      721 tctcaatcgg gatggaatgg ttatggcgga tggggctggg atattaattc ttgaagagct
      781 acaacaagca aaagcaaggg gagcacaaat tctcggagaa atcattggct atggcgcaag
      841 ttgtgatgca ttccatgtca cagcgccaaa ctcacaagga caagcaagag ctattgttgc
      901 tgctttaaat gatgccaaat tatcaattaa cgatgtccat tacatcaacg cacatgggac
      961 aggaacccag ctcaatgaca gcacagaaac agaaacgatt aaaatggttt tcggtaaaag
     1021 agcctatgac atcccgatta ctgctcaaaa agccatgaca ggacatgcga ttggggcagc
     1081 aggagcaatg gaaatcattg caacaacact aagcttgcaa aaaaacacgc tgttaccaac
     1141 tattaacctg cataccccag acccagcctg tgatctggat tatgtgccta atgctgcgcg
     1201 agaaaaaacc attgatattg ctttatccaa ccatttcgct ttcggtggag caaatgccgc
     1261 tttagttctg cgcaaataca ttagttaaga atataaatag cttacgctaa acagcaattg
     1321 attattatat aaatgggtca atcgtggccc tttggtaata ttaactccat caccacccaa
     1381 ataacttttc cctaagtctg cgaactcata tcctacaccg acctgccagt tacgatttaa
     1441 cattttttga acaccggccc ccacactgta agcaaaagca taagtggtgt ttgacgcaaa
     1501 ccatggtgca ggaaacagga attgattgat agaaagagtc ctgtaatcat gggcattatt
     1561 aaatgctatt ccaaaactac cgctcagata aggttgcacg ggtgtaaatg cacttcctat
     1621 cagtttgcct tttagctcta ctcgtgcgtg attcacttta tagtcatacg tatagacatt
     1681 aaggaggcca ttcaggttga catcaccagt aaccttggca tcgcttactc ccgctacccc
     1741 taaacccaat tgaccaatca tttggggatt gatcgcacgc tgcagcccaa agaatatctc
     1801 gccattggct aaaatagtcg tcggagaatc atgggtaaaa taaagataat aatttggcgg
     1861 taaattggga ttgaaattat taatatagac tggagacatt ggataaatat actgattttg
     1921 tccaggtgtt gcccaagaag gtcctccact cactgtaata atagaggacc aaagtaaggg
     1981 aatttcttcg tcataaatgg gttctgaagc ggaaagattc atactaaaca aaacacataa
     2041 tccggtgagc aatatttttt tcagcatatc ccatcctttt gattacaaat cagccctctt
     2101 gattcaggct ctttaatgaa ctgattttaa tagaagttat ttgattttat accctaatta
     2161 atctcatttt tctagggtgc gttgacaatt catctggctc accagaatag caggatcatg
     2221 ataagaaaaa ttattaatct gaaagccatc tgaatcgagg ataattcact cgaaaatgga
     2281 ccataagagg tatataatcg ctctattttg cggaattgaa aggtaaacca atgaattctt
     2341 ctcttcgtga tatagcaaac cttgttcaag gtatggttat tggcaatgat gccatcactg
     2401 tttccacact atcacccata gataatatac ttcccggatc tttagttttc gccgaaggtg
     2461 aagacaatat caaacttgct gaaaactctg aagcagcagc tattcttatt ggtcaaggta
     2521 ctatcgattc cccaaagcca ttaattcagg taaaaaaccc ttttaaagca tttattgcct
     2581 tactcaacca tttttatccc ccaaggagaa tatctccggg ggtacacccc actgctgtaa
     2641 taggtgcaga agtacaatta ggtgatgaag tttatgttgg gccattcgta gtcattgaat
     2701 caggaagtat tataggcaac cactcggtgc tcaaaagcca tattcatatc ggccataatg
     2761 tggtcattgg agatcacaca accattcacc cccaagtcac tatttatgat aattgccgta
     2821 tcggttcgaa tgtcactatc catgcctcta cagtaatagg ttctgatggc tttgggtata
     2881 cttttgttga tggccaacat ctcaaagtac ctcattcggg atatgtggta attgaaaata
     2941 atgtcgaaat tggagccaac acagcgatag ataaggccac attaggtgct acagtgatag
     3001 gtgaaggtac aaaaattgat aatttggtac aaatcgctca ctcagtcaaa ttaggcaagc
     3061 ataatattat ttgcgctttt actggcattg ccggcagtac cactaccgga aacaatgtca
     3121 tctttgcagc caacgtggga gtgagtgacc atgttcacat cgaggatgag gtcatattag
     3181 gcgcacgtac aggagttcct ccacacaaac acttaaaaaa agggacggta tatcttggta
     3241 atccggcaaa acctaaagat gttgcgatta agcacgaact gtcagtgaat cgtatcccat
     3301 taatacgaaa aaacattaaa tcacttaccg agcaagtggc tgtaattaac aaaaaacttg
     3361 atattaaagc aaaagaggta gagtaactat gaaaccgcct ctgattctaa tagacggatc
     3421 ttcctatttc tttagagcgt ttcatgccct tccaccattg acaaactcca aaggccagcc
     3481 tacaggcgcc atttatggag ttgccaatat gattaaaaaa ataatcaaag attatcaacc
     3541 agaagaaata gccgttgtct ttgatgccaa agggaaaaca ttccgagatg aatggtatcc
     3601 agaatacaag gcacacagac caccaatgcc tcaagaatta agctctcagt ttcaaccgct
     3661 aatccagtta ctgcaagcaa tgggattgcc cttgcttatc atcgatggag tcgaagcaga
     3721 tgatgtgatt ggcactttgg caaaacaagc cacagagcaa ggcataccag ttgttatatc
     3781 aaccggtgat aaagacatgg cacaattggt caatgaacat gtctccctca ttaatacaat
     3841 gagtaattac agtatggata ttgatggtgt caaagcaaaa tttggtgtaa cacctgagca
     3901 aatcattgat tacctcactc tcattggaga tagtgtagat aatattccgg gagtagagaa
     3961 atgcggtccc aaaacagctg taaaatggct gacagagtat caaacgcttg ataatttgct
     4021 tgcacacgcc aacgaaattg gcggcaaaat tggtgaatat ttgcgtgcca gcatccctca
     4081 tttgccactc tcaaaaaaat tggtcactat caaaactgat ttggatttgc ccttaaattt
     4141 aaaccaattg atgcccaaac cggctgatag cgagcaatta attaaattaa ctcgtgaatt
     4201 agaatttaag tcatggctta aagagttact acaggaagaa gagaatcaaa aatcacccaa
     4261 agaaatggat gccagcaata ataaatccta tgaaataata acgactcata aacagttaaa
     4321 tcattggctt aataagctag agcaaagtca acaattttgc atcgacacgg aaacaaccaa
     4381 ccttgatgtc atgcaagctg aattggtagg catctcttta gcagttgagg aagaaaatgc
     4441 atcttatatt ccccttgctc atactgatgg cagtacacag ttagtaaaag aagaagtttt
     4501 aactgcttta aagcctattt tggaaaatcc agctatagga aaaatagggc aaaacattaa
     4561 atatgattac agtgtcctta aaaattatgg cattacctta aaaggcattg ggtacgacac
     4621 catgctggaa tcctatgtgc tcaatagtgg tgcaggcaga catgatatgg attctctagc
     4681 tttaaaatat ctgggttata aaacaataag ttatgaggat gttgcgggaa agggagccaa
     4741 acagctccgt tttgaccaaa ttccagtagt gaaggccggg atctatgcag ccgaagacgc
     4801 tgacattact ttgcgattac accataagct gtaccccatg ctggatgagt cattgcgtaa
     4861 cgtgttgcat gatatcgaga tacctttact cactgttctc gcagacatgg aaatgcacgg
     4921 cgttctcatc gacccagtca ttctggaaaa gcacggaagt cgtttgaaag aacaaatgaa
     4981 atctctggaa caggaagcag ttcaactcgc tggaaaagca ttcaatctca attccccaaa
     5041 acaattacaa gaaatactat ttgatgaaca aaaactgcct gttgtagcga aaacccccac
     5101 gggacagcct tcgaccgcag aatctgtttt acaggaattg gcttttgatt atcgccttcc
     5161 tgctgtaatt ctggaatacc gaagcttatc aaaattggtc agtacctata ttgatgcctt
     5221 acccaaaaga atcaacccca aaacacatag agtgcacaca tcctataatc aagcggtagc
     5281 agcaacaggc cgattatctt ccagtgatcc taacttacaa aatatcccta tacggagtga
     5341 agaaggaagg ttgattcgaa ctgccttcat agcaccagaa ggaagtctta tcatggcggc
     5401 tgattactcg caaatcgagt taaggataat ggcgcattta tctcaagatg ataacctttt
     5461 acgagctttt gctaatggct gggacatcca tgccgcaacg gcgagtgaaa tctttcaaac
     5521 gaatttggat gctgtgtcca aagaacaacg aaggcgtgcc aaggcagtga actttggttt
     5581 gatatatggt atgtctgcct ttggactggc aaaacaaatt ggtgtggagc gtcaggatgc
     5641 tcaacattat attgatactt acttccgccg ttatcctaag gtacttgaat acatggagcg
     5701 tactcgcaaa caagcgcatc aacttggtta tgttgaaacc ttgtttggcc gtcgtctcta
     5761 cttgcctgaa attaattcac gcaacctaat gagacaaaaa gcagctgagc gcactgccat
     5821 caacgggcca atgcaaggaa ccgcagctga cattataaaa aaaaccatgc tggctatttc
     5881 cagttgggag cattcgcaaa agaacccctc tgcaaagatg atcatgcagg tacatgatga
     5941 attggttttt gaagtccgaa aggaagcggt tgaagaatgt cgcgccatta tccacaagct
     6001 catggaacaa actgtaaaat tatctgtacc tcttgttgtg tctattggca caggttctaa
     6061 ctgggatgat gcgcattgaa gcgcataaaa gcgtttaatt tattggattt aataataatt
     6121 aatagaagtt tgactcgcaa aggaaggatt ttgaccacct ataaactcac caaaataata
     6181 agaccacgtt ttatgaatac gttccaaacc aatgactttg ggccaagtat tatactcatt
     6241 caaaaacagg ccatgactct taaacacttt aataaagttt tctcgcatag catcggaatc
     6301 agaccaggct acaataggaa gttgcgggta tttttgcaat aaaattcctg caagctcggg
     6361 accgttgcag ttcatttcat cagggctggc acccagatca ccatcaacaa tgacgatatc
     6421 ggggcaatag ttattgacaa aggataatgc ggcttgacta ttattgacaa tagtcactga
     6481 aattgatgca acaaccgact ccaacaatcg gcgcaaacaa aaggcattaa aagcactgtc
     6541 ctcaacaatt aatacacgca tcactgctcc ctcttaacta cgagagaagt ataatgtgcg
     6601 aaccttaaga aaatcttaag aaatagaatt aatccagtta aaaattacaa attgaaaaat
     6661 caacgaagtt ccctattaaa ttttttttac aaattgtgat tttaatttca tggcgcctat
     6721 cccgtcgatc ctgcagtcaa tgtcatgatc gccgtcaacc agacggatat tttttacttt
     6781 agttcctacc tttatcactt gagaagagcc ctttattttt aaatccttga cgaccgttat
     6841 cgtatctcca ttttgcaaca ggttaccatt ggcatctttg ataattttcg cagactcttc
     6901 gtcattgtta ttactgtttt ttggccattc atgcgtacac tcagggcaaa ttaatacgtc
     6961 accgtcctca taacagtatt cagaaagaca tttaggacaa ttgggcaatt ggttcatttt
     7021 gttgaaaaac cctgaattaa attgattaca aactatttta ctctaatagc aagcatttta
     7081 aaaatttctg actacattga tctgtaattg aacaattctg gaatggccgg ataaataacg
     7141 attttttaat cattatttat ccaacgaaat agaaatgcta tgaattatgg agtggattag
     7201 tcaatacgta ttcttcttgg cattgctctt ctttaccttt cgtgggagtt cttcttgata
     7261 gaatgcttgg gaaatgacca accggatgaa tattgtttgt gctcagcaat tgagaaccac
     7321 ccaaaccccg catagcctca tggctgcttt gcttaacagc aggaacagcc tcttcgctta
     7381 cggactctga tgtaatttct gttccttcag caactacaaa tccaatagca cttgatagtg
     7441 cagcagtgcc agtaccactt atagcaccta aagtcaaagc tcctaaaaga ccaacacctg
     7501 aaggagcaaa aactccggta gcaaccaatg taacacctaa agcaaagcca aaaccaaagc
     7561 caatgcctgc aaaagcgccc ataatcttta gggtacgaaa atcagaagac ggaaccggtt
     7621 ggttagataa gacagtagcc gtttcttcac gccgggataa attatcctct tgaagtaaaa
     7681 caggggtctc ttcaccgata gaaacctcat ccccttgctc atctggtaat tgaacctctt
     7741 caggagagtt ctctttaggc gggaacattt ccctaacatc ttctaaatat tgagaccatt
     7801 caaactcccc gggattttta cgatacccac gaatttcctc ctcattgtat cctttacctt
     7861 ttactgcacg cagcatctca gcatagtctg tcgggctatc atcaaggata taaacccggt
     7921 tggccctctc tgttgggtga ttaagccggg aattgacatc attaaattta taccccgact
     7981 ccagaatggt taacttgctg atttcttcat cagaaaaacc ttgatatttg aaaactgctt
     8041 taatgtattc agctcgattt ttggtgacaa tattgacagt cacatcatca ttttttagta
     8101 cttcatggaa aaacgccact gcttcaggac tcatcaggaa atcaacatcc tgctggtcat
     8161 gatcaaaatt ttcgttgtat tttccatatt ttgcttcgaa taaagcctga gcttcaattg
     8221 gatctttcat tggagtgttt ttgtaatctt gctctacatc ctttttatag ccttgtaaca
     8281 gtgattgata aaactcggta aatacagttt cattaccgct ttttccggtt acagtaccat
     8341 caaaatcggt aaaaataata actttaggca ttgtatttcc ttactatttc tcttaatttg
     8401 aaatgactcg atatt
//
LOCUS       DACVWI010000128         8404 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.128, whole genome shotgun sequence.
ACCESSION   DACVWI010000128 DACVWI010000000
VERSION     DACVWI010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8404
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.128"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            3..812
                     /locus_tag="JBH85_10635"
     CDS             3..812
                     /locus_tag="JBH85_10635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HAU0946657.1"
                     /translation="MKIIHISDLHFGMHQPKVLNAFLQETALDKPDIILISGDLTQRG
                     LSYQYRELCSFINQLPAQTLSVPGNHDIPFYNVPARFIFPFRQYKRYINPDVTTTFEN
                     DCVRILGVNSVNPLQLKDGKLSHETLNRIKRYFKPDDEKLNLLFFHHNFDYMEGLHKP
                     LANAQTLLSFLKQSTIHLVCTGHLHYAHLSLIAKNNGYSCLALHAGSLLCPRSKDNLN
                     SYYVIEANQKKCRITWRVFDQEHFTARSIYFIDFNKKNASFEHLNPVTDDA"
     gene            complement(866..3148)
                     /gene="legC4"
                     /locus_tag="JBH85_10640"
     CDS             complement(866..3148)
                     /gene="legC4"
                     /locus_tag="JBH85_10640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegC4"
                     /protein_id="HAU0946658.1"
                     /translation="MIHYVSLIHFNELFEIMKPNLFYFVLTHILAESPNLKLLDEITP
                     VHDITLKDKKYYRLELPLANIAAEGFRLHDAHISLYEKTDPHNPNLGLSHFTAIFHDQ
                     NGQTYRMHLFLNRFDALACPATWELLDDDEQYVKVPPPENLEYFIHSVWQLGLPCLQL
                     LRKKQKEIEAKLLADYHRLNEETTSLSKDLDKNRAVYLEKLDELIKTTKSLSQISESN
                     HWLREAIYLGKTHKYVSSMPEPILEPVKKSDEEHKKDDKAEVVALSPKQGATEPKISR
                     GNIGLSQSTLFSKSAKAKRPVDVKMERDISKIKKLFAQLLKTEDKKIKAVLLIDLHWK
                     IKEINLETEELLTKEQTQALNEIEGRANKEAKSLLERALFAGEFEYAQTLSPYYPLIN
                     NDLMVLALTQRKADLLSFLVTKVGLPINSYPIKTKAQTYSNAVEYCFSEHSESLVDCF
                     SVLIKNGASLMQPVGLHKLPLAHLLLSEIPRHPLHAALEQNKNLTLNNKQFYAHLINA
                     LKSCLLSGDIEGDQKIALEESIVRYEHLKINVKNSSSLLSPQNQALADEISDITKKLL
                     PDAVAEAIENDEEISREKAIADKEYKELIRKVKAFYHKTGKNFAFQSLINSANQELKK
                     ELLEIDFNIDISFSELKESILENLSKERLMFSYCSELIDVQRTIMQISQGASRKNKNL
                     KKLNARHAELIELLTDLSQNTPQSMIKEANEFQDSFSQLQDLLNGLNQLEGSFGMLAG
                     VLNQFLEGSTSESESFDIKL"
     gene            complement(3539..4114)
                     /locus_tag="JBH85_10645"
     CDS             complement(3539..4114)
                     /locus_tag="JBH85_10645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946659.1"
                     /translation="MLPSSKDAQLCTNAYNKLWHIFDSVKADYLGDPAAQAAIFNVEF
                     PKVLAEDFSLTINNLPVEPNSSETITVNVQGLPQVISMALEQITSWGQHHIAGPFSFK
                     LLSESLPYKTRVYLMTTRDIDYTNSPENNGCAAFLAQKNMVCTVKNTGLTTRKAILNS
                     MNSHVVTTYIIPAPNCSLWIAPPVEDFPTEA"
     gene            complement(4415..5704)
                     /locus_tag="JBH85_10650"
     CDS             complement(4415..5704)
                     /locus_tag="JBH85_10650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HAU0946660.1"
                     /translation="MSFYIQLASLSIIILYVLLLFRNVDPLVATAVCVGLGFLWNIST
                     PIDIGNAMADALGSFMALVGFIIMLGRGLGEVLTHTQVSHTLVHQIVYGVGVNTQRRA
                     KIGIVLSSFIIVGLLGTLAGGLAILAPSLRPIAGSVGLSRPSLAVLMQASAEEALILG
                     PFAPPVVTLLGVTGLSYGTVFLYASLPIAVVTLITTWFMASRLQKLYINEPCEDENST
                     EPFTPNRQQKRVTLIFLISFLFCVVYGLFTQAKTSYVIFVMLFLALITGLSCRLGLKQ
                     IFNLLFEGMQKSLHLFFLFILFDPFMALIHQAGGFNALTELLTPLINLGGKPVLSILI
                     GFTGAFGMPGAAEATIKMLHQLFSPSVLQMQLPLITFALCMLFATRVTNYAYPGANMF
                     AAMGFAGSENVKAMIQNGLVVTGVQVAFLIVYSLFIP"
     gene            complement(5704..6807)
                     /locus_tag="JBH85_10655"
     CDS             complement(5704..6807)
                     /locus_tag="JBH85_10655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide epimerase"
                     /protein_id="HAU0946661.1"
                     /translation="MNIKEIHIAELTIPLSRPFITAVRRTECVDDVVVLIKTDCGKIG
                     YGSAASTPAITGDSKESIIAAIKSALGPPLIGHNIAEFNLLLQMTDEAIGGNSSAKAA
                     IDIALHDLFAQYCGLPLYRLLGGNTNCIDSCITISVKEVDEMVSDAVDLIQRGHKTLK
                     IKLGLNPVDDINRIRAIRQAVGNDITLLADANQGWSYEEALIAITAFKKENLNVPLVE
                     QPVNARNLPDLKTISDQVGCAIIADEACFSPEDALNIAKINACDGVNIKLMKSGGIEK
                     AQSIYHIAQAAKMQIMVGCMLESPIGVAAIASFALSKPDISYADLDPIFLIRENYILG
                     GAQSLSNKIILADKPGLGIEGITQGLNLIGVIR"
     gene            7038..>8404
                     /locus_tag="JBH85_10660"
     CDS             7038..>8404
                     /locus_tag="JBH85_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EbhA"
                     /protein_id="HAU0946662.1"
                     /translation="MSFAIIQISYHPQNQSICINLEIPMLFKLNKSSSHKPEQISRSY
                     HRLMLQLKTWETNHYTPDLNEEYFRTLDIETRNVQIFYNDFVNNVLIPLEQQPTTDLP
                     EFITREDIFKLLSFKIFMPLAQIFAEREQWMRRIAGTNGKNAHTSESYNKFKKIFLNS
                     HHKFVIEESLFHFEHGTLKYHHEWQTAKRQIAKEVKSLRVLQENWKEKKNKIDRKNAS
                     ILFDFLDSFESIPNRLRSREEERFKQTEVYKKALSTDKLKAIELLNQHLFDYSNPQEE
                     LAERMKLIKALYDSNILFEQHHTPIGWLKNQLNIETVLDKKLASLEQSLKAAENALNS
                     YMEHAMPKTVTISTELRKELEKDSIALPEENKSPEAVSENQNTSHSNPVVQPQITPVQ
                     NKKNTGKVYLKVQEYEENLHKLGLFTPPKKTFSQPLQIQKKPLSDENKFSLKITNGAD
                     LKLFPT"
BASE COUNT         2733 a         1676 c         1475 g         2520 t
ORIGIN      
        1 atatgaaaat tatccatatt tccgatttgc attttggcat gcatcaacct aaagttttaa
       61 atgcgtttct tcaggaaacc gccctcgata aaccagatat cattcttata tcaggagatt
      121 taactcaacg tggactctcg tatcagtacc gggagctttg ctcatttata aatcaactgc
      181 cagctcaaac gctttctgtt cccggtaatc atgatattcc cttttataat gttccagcac
      241 gttttatatt cccttttcgc cagtacaaac gctacataaa cccggatgta accaccacct
      301 ttgaaaacga ttgtgtgcgt attttggggg ttaatagtgt caaccccttg caattaaagg
      361 atggaaaatt atctcatgaa acattaaata gaattaaacg atattttaaa ccggacgatg
      421 aaaaattaaa cttgctcttc tttcatcata attttgatta tatggaagga ttacataagc
      481 cactagcgaa tgcacaaacg cttttaagct ttttaaagca aagtaccatt catttggttt
      541 gcacaggtca tctacactat gctcatttaa gtttaattgc taaaaataat ggctactcct
      601 gtctggcgct gcatgccggc tcattactgt gcccacgcag caaagataat ttaaacagct
      661 attatgtgat tgaagcgaat cagaaaaagt gccgcattac ctggcgtgtt tttgatcaag
      721 aacactttac tgctcgctcc atctatttta ttgattttaa taaaaaaaat gcgtcatttg
      781 agcacctaaa tccagtcaca gatgatgctt gatgcacagg actacactgt atttcgcttg
      841 tcagaacact agtatgccaa ttatcttata gcttaatatc aaaagattct gattccgatg
      901 ttgagccctc aaggaattga tttaatactc cagcaagcat gccaaaagag ccctccaatt
      961 gattcaagcc attcaataaa tcttgaagct gactaaaaga atcttgaaat tcattggctt
     1021 cttttatcat agattgaggc gtattttggc ttaaatctgt gagcaattcg ataagctcag
     1081 catgtcgcgc attgagtttt ttcaggtttt tattctttct gctcgctccc tgcgatattt
     1141 gcatgattgt tctttgaacg tctattaatt cactgcaata gctgaacatt aatctttcct
     1201 tgcttaagtt ttccagtatg gattccttaa gctcgctaaa gctaatgtcg atattaaagt
     1261 caatttctaa taattctttc ttcaattcct gattggctga attaattaag gattgaaaag
     1321 caaagttctt tccggtttta tgataaaatg ccttcacctt acgaatcaat tctttatatt
     1381 ctttatcagc gattgctttt tctcttgata tttcctcatc attctcaatt gcttcagcca
     1441 cagcgtcagg caataatttt ttggtaatat cgcttatttc atcagccaat gcctggtttt
     1501 gaggactcaa aagtgaggat gagtttttta cattaatctt taagtgctcg tatcgcacaa
     1561 tggactcttc cagggcaatt ttctggtcac cttcgatatc accagataat aaacatgatt
     1621 ttagtgcatt aattaaatga gcataaaatt gcttgttatt gagagttaaa tttttgtttt
     1681 gttctaacgc ggcgtgcaaa gggtgcctgg ggatttcaga caaaagaaga tgggctaaag
     1741 gtaatttatg taagccaaca ggctgcatca aacttgcgcc attttttatt aacacgctaa
     1801 agcagtctac caacgattca ctatgttctg agaagcaata ctcaacggca ttggaatacg
     1861 tttgcgcttt tgttttaatt ggataactat tgataggcaa accaacttta gtgactaaaa
     1921 agcttaaaag atcagctttt ctctgagtaa gcgcaagaac cattagatca ttattaatca
     1981 aaggataata aggcgacagg gtttgagcgt attcaaactc tccagcaaac aaagctcttt
     2041 ccaggagtga cttggcttct ttatttgcac ggccttcgat ttcatttagg gcttgtgttt
     2101 gctcttttgt cagtaactct tccgtttcca aatttatttc tttgattttc caatgtaaat
     2161 caattaaaag aactgcttta atttttttat cttccgtctt taatagttga gcaaacaatt
     2221 tttttatctt gctaatatcg cgctccattt tcacatccac agggcgtttc gctttggctg
     2281 atttggaaaa taaggtcgat tgagaaagcc cgatattgcc tctgctgatt ttgggctccg
     2341 tagccccttg ctttggagac aaggcaacaa cctctgcttt gtcatctttt ttatgctctt
     2401 catcactttt tttaacaggc tcaagaattg gttccggcat agaggatacg tacttgtgtg
     2461 ttttccccag gtaaattgct tctctcaacc aatgattact ttcagaaatt tggcttaatg
     2521 atttagtcgt cttaattaat tcatcaagct tttccaaata gaccgctctg tttttatcta
     2581 aatccttact tagtgaagtc gtttcctcgt ttaatctgtg gtaatcagca agcaatttag
     2641 cttctatttc cttttgcttt tttcgcaaca attgcaaaca aggcaggcct agctgccata
     2701 cagaatgaat gaaatattcc agattttctg gtgggggaac tttgacatat tgctcatcat
     2761 catccaataa ctcccaggta gctgggcatg ccagagcgtc gaaacgattc aaaaacaaat
     2821 gcattcgata ggtttgacca ttttgatcat ggaagatcgc agtaaaatgc gaaagtccta
     2881 aatttggatt atggggatct gtcttctcat aaagactaat atgcgcgtca tgcagcctga
     2941 atccttctgc agcaatatta gccaagggta attctaagcg ataatacttc ttatctttta
     3001 aggtaatatc atggaccggt gtaatctcat ctaataattt aagatttggg gattcagcta
     3061 aaatatgcgt caatacaaag taaaacaaat tgggtttcat aatctcaaac agctcattga
     3121 aatgaatcaa ggatacataa tgaatcaaat ttgttcaact tgttttttaa atccaagagc
     3181 tattgtccac aacatggaat gacatcctga ataacaacaa gcaaatgccg gtaaatgctg
     3241 tatcgattca ataaaaagcc gacagtatgc agttagaaag aatcaggact tacgaaaacc
     3301 cccaagatca aggcaaaaaa tatttttaat gagggggttt agctaaacta aatgaccgaa
     3361 ttaaaaattt tttttaacaa agagattggg atttttcgta agtcctgaga atgtaaaacc
     3421 tgtgtttatc ggatcctttc ttaactcatt aaatatccca aagtgacaga ttttacagaa
     3481 ttttggggaa attaaataag tggtttttcg ggaagagaac tcatttcatt actgtaaatt
     3541 atgcttcggt aggaaaatct tcaaccgggg gagctatcca tagactgcaa tttggagcgg
     3601 ggataatata agttgttaca acgtgagagt tcatactatt aagaatagct tttctagtcg
     3661 taagcccagt atttttaaca gtgcaaacca tatttttttg tgccaggaaa gctgcgcaac
     3721 cattattttc cggagaattg gtgtaatcaa tatctcgggt tgtcatgaga taaacccgtg
     3781 ttttgtaggg taatgattca gagaggagtt taaaactgaa aggaccagct atatggtgtt
     3841 gtccccatga agtaatttgc tctaaagcca tggaaatcac ttgaggaagt ccttgcacat
     3901 tcacagtaat tgtttcagaa ctattgggct caacaggtaa attattaatg gtcagggaga
     3961 aatcttcagc cagtactttg ggaaattcca cattaaatat agcagcttga gcagctggat
     4021 cacctaggta atcagccttc acactgtcaa aaatatgcca aagtttatta taagcattgg
     4081 tacaaagctg agcatctttt gaactgggaa gcacgcttgc gaaaactgga ttgatatcgg
     4141 caacaattaa gcctataaaa aaaatatata tatttcatgt aactaactcc ttgttatcta
     4201 agttgaatta aatttgactt gatctgatac agcctattga aaaaaaaagt tttcatttta
     4261 aaacatatta aatacaaatt tgacttgctc aatttagctt tggcagaaat ttttaaacac
     4321 ttttctttac cagcttctgc atctatataa gccctaagca tagccctgtg tggtgcaaac
     4381 tcattgattt aaaggattaa agcgatcaca aacatcaggg tatgaataaa ctataaacaa
     4441 ttaaaaatgc aacctggacg ccagtcacta caaggccatt ttgtatcatg gctttgacat
     4501 tctcacttcc agcaaaaccc attgccgcga acatattggc gccagggtaa gcgtaatttg
     4561 tgacgcgagt tgcaaagagc atgcacaaag caaaagtgat aagaggcaat tgcatctgga
     4621 ggacagaagg gctaaagagc tggtgaagca ttttgatggt tgcttctgca gcgcctggca
     4681 taccaaaagc gccggtaaat cctattaaga tcgataatac tggtttccct cccaggttaa
     4741 ttaatggtgt taataactca gttaatgcat taaatcctcc agcttgatgg attagtgcca
     4801 taaaaggatc aaataaaata aacaaaaaga agagatgcaa gcttttttgc attccttcaa
     4861 ataacaggtt aaaaatttgt ttcaaaccga gtcgacagga taatccggta atcagcgcca
     4921 gaaataacat gacaaagatc acataagagg ttttcgcttg agtaaataag ccatagacaa
     4981 cacaaaacaa aaaggaaatc agaaaaatta atgtaaccct tttttgttgt ctattgggag
     5041 taaagggctc agtgctgttc tcgtcttcgc agggctcatt gatgtataat ttttgtaatc
     5101 gtgaagccat aaaccaggtg gtaattaaag tcactacagc aattgggagc gaagcgtaaa
     5161 gaaatactgt cccataactt aatccagtga caccaagcaa ggttacaacc gggggagcaa
     5221 aaggccccag aattaaagcc tcttcagctg aagcttgcat gagtaccgcc aaactgggac
     5281 gtgacaagcc tactgaccct gcaataggac gcaaactggg ggccaggata gctaaacctc
     5341 ccgctaatgt tcccagcaaa ccaacaataa taaaggatga gaggactata ccaattttag
     5401 cgcgtcgctg agtattaacc ccgactccat aaacaatttg gtgcactaaa gtatgactta
     5461 cctgggtatg cgttaaaact tcgcccaacc ctcgacctaa catgatgata aaaccaacca
     5521 aagccataaa tgaacccaag gcatcagcca tggcattccc tatgtcaatt ggggtgctta
     5581 tattccacaa aaaacctagc ccaacgcaaa cagctgtcgc tactaatgga tcaacgttac
     5641 gaaataacag caaaacataa agaataataa tggataaact ggctagctga atgtagaaag
     5701 acattagcgg atcactccaa ttagattcag tccctgtgtg atgccttcaa tccctaatcc
     5761 cggtttgtct gccaggataa ttttattgct gagactttgt gccccaccaa gaatataatt
     5821 ctcacggatc aaaaaaatag gatcgagatc tgcataagaa atatcgggct tacttaatgc
     5881 aaaactggct attgcagcaa ctccaatcgg cgactccagc atacatccaa ccattatttg
     5941 cattttggcc gcttgagcaa tatggtagat agattgagct ttctcaatgc ctcctgattt
     6001 catcaacttt atattgaccc catcacaagc attaatcttt gcgatattca atgcatcttc
     6061 tggtgaaaaa cacgcttcgt cagcgataat tgcacaacca acctgatcac taatcgtctt
     6121 taagtcaggc agatttcgag cattaaccgg ttgctccacc agaggaacat tcaaattctc
     6181 ttttttgaac gcagtaatgg cgattaatgc ctcttcataa gaccatccct gatttgcatc
     6241 tgctagcaga gtaatgtcat tgcctactgc ctgacgaata gctcgaattc gattgatgtc
     6301 gtccactgga tttaatccca atttgatttt cagggttttg tgccctcgct gaattaaatc
     6361 aaccgcatca ctcaccatct catcaacctc tttgacactt atcgtaatac acgaatcgat
     6421 acaattggta tttcctccca acaatctata gagaggcaaa ccacaatatt gggcaaataa
     6481 atcatgcaaa gcgatatcaa tagcagcctt cgctgacgag ttacctccta tagcctcatc
     6541 agtcatttgc agtaataaat tgaattcggc aatattatgt ccgataagag gaggccccaa
     6601 ggcactttta atagcagcaa taatggattc cttgctgtct ccagttatag caggtgttga
     6661 tgctgctgaa ccataaccaa tctttccaca atccgttttt attaatacca caacatcatc
     6721 aacgcattct gtacgtctca ccgcggtaat aaacggacgg cttaatggaa tagttagttc
     6781 tgcgatatgg atttctttaa tattcaaaca agcacctgtt catttattgt ttgcggggta
     6841 accctaatga gatattaaaa tattaagagt taatttggca aaacatgttt ttaaattata
     6901 tctctcacca aataatatta acttgatacc cagcttcaat acatctcttt tctattcttg
     6961 aatcaactca ataaaataaa ccaactattt ctgacgaaca ccaaaaacag atacggattt
     7021 catgtattca aaaacaactg tcttttgcta tcatccaaat ttcttatcat ccccaaaatc
     7081 aatccatttg tattaacctg gagataccca tgctttttaa actaaataaa tccagctctc
     7141 acaaacctga acaaattagc aggagttacc accgtttgat gcttcagttg aaaacatggg
     7201 aaacaaatca ctacacacca gacttaaatg aagaatattt taggactttg gatattgaaa
     7261 caaggaatgt tcaaatattc tacaatgatt ttgtgaacaa tgtattaatc cctcttgaac
     7321 agcaacctac aactgatttg ccggaattca tcaccaggga agatattttc aaactcttaa
     7381 gctttaaaat atttatgcca ttggctcaga tatttgcaga gagagagcaa tggatgagac
     7441 gtattgcggg taccaatgga aaaaatgctc ataccagcga aagctacaat aaattcaaaa
     7501 aaatcttttt aaactcccat cataaatttg ttattgaaga aagcttattc cattttgaac
     7561 acggcacatt aaaatatcac catgagtggc aaactgcgaa gcgacaaatt gccaaggaag
     7621 taaaatcatt acgtgtatta caagaaaatt ggaaagagaa aaaaaacaaa attgacagaa
     7681 aaaatgcttc tatcctgttt gattttcttg atagttttga aagtattccc aaccggttac
     7741 gctcaaggga agaggaaaga tttaaacaaa ctgaagtcta caaaaaagca ctttccacag
     7801 acaagctcaa agcaatagaa ctcctgaatc agcatctttt tgattacagc aatcctcaag
     7861 aagaattggc agaaaggatg aagcttatca aagctctgta tgacagcaat attctatttg
     7921 aacagcacca tactccaata gggtggctga aaaaccaatt gaacattgaa acggtacttg
     7981 ataaaaagct ggcttctctg gagcaatcct taaaagcagc ggaaaatgct ctaaattctt
     8041 atatggaaca tgcaatgcct aaaacggtca cgatttccac tgaactaaga aaagagctgg
     8101 aaaaggatag catcgcgctc cctgaggaaa ataaatcacc tgaagcagtt tcagaaaatc
     8161 agaatacaag tcattctaat cctgtagttc aacctcagat tactcctgtt caaaataaaa
     8221 aaaatacagg aaaagtttac cttaaggtgc aagaatacga agaaaacctc cataaacttg
     8281 gtttatttac accccccaaa aaaaccttct ctcaaccatt acaaatacaa aaaaagcctc
     8341 tttctgatga aaataaattc tcgctaaaaa taacaaatgg agcagattta aagcttttcc
     8401 ccac
//
LOCUS       DACVWI010000129         8377 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.129, whole genome shotgun sequence.
ACCESSION   DACVWI010000129 DACVWI010000000
VERSION     DACVWI010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8377
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.129"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..776)
                     /gene="motD"
                     /locus_tag="JBH85_10665"
     CDS             complement(<1..776)
                     /gene="motD"
                     /locus_tag="JBH85_10665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotD"
                     /protein_id="HAU0946663.1"
                     /translation="MGNTSKMKSKQKKTEEHQDSHRWVVSYADFITLLFAFFVVMYAI
                     SSVNVSKYKSLSEGMKSAFNQKDQNKATQSTDNLKDGPEEKKTKGTFKDGLDELNKSL
                     SELEDGDFKLNRQEGWVEIDIKAGSLFDSGSADIKPEALIKLMKLAEKIKNLPFTVVV
                     EGYTDNVPIETPQYPSNWELSAARAATVGRILNGFGIANHRILVTGYGDQYPITDNYT
                     EAGRSQNRRVNILITKNRKVDRILNPDLSRVHFSVISNTNS"
     gene            complement(733..1506)
                     /locus_tag="JBH85_10670"
     CDS             complement(733..1506)
                     /locus_tag="JBH85_10670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein"
                     /protein_id="HAU0946664.1"
                     /translation="MDTLTLIGLLTGFLAIIVGQIFEGGDLNSLLNFPALLIVMGGTL
                     GAVMVQTPLTTFKRAFRILPWVVKPPHHNFEECRTTLIELSRKARQLGLLSLEDRLDV
                     ETNPLIYKGLELLVTGVDKLTLRQVLEAEIDRTEHQDLRAAHVFESMGGYSPTIGILG
                     AVLGLIQVMRNLADPSQLGLGIAVAFVATIYGVGFANLFFLPVANKLKSCISHKVHFD
                     EMVVEGLVAMASGESPNMLQLKLNNYGQHKQDEIKTKEN"
     gene            complement(1516..2232)
                     /locus_tag="JBH85_10675"
     CDS             complement(1516..2232)
                     /locus_tag="JBH85_10675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095808.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HAU0946665.1"
                     /translation="MDALAAYSKVNQQTQEALVKTHATLVKRIAHHLLGRLPQSVQLD
                     DLIQSGMLGLLEAARHYDSSKGASFETYAGIRIRGHMLDEVRRNDWVPRSVYRNSRMI
                     SDAVRILEHKLGREAKDNEIAEELGVSLDDYHDMLQDSISSHLYGFDDLGVTDDVLFD
                     HEGNGSTEPHRNVMRSDMMNRLTQVIDSLPRKERLVLSLYYEQDLNLKEIGEILEVSE
                     SRISQILSQATHRIRSRLPE"
     gene            complement(2329..3216)
                     /locus_tag="JBH85_10680"
     CDS             complement(2329..3216)
                     /locus_tag="JBH85_10680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MinD/ParA family protein"
                     /protein_id="HAU0946666.1"
                     /translation="MLGERIMSKLSKGIKDQASGLRNLSRNKPVKVIAVSAGKGGVGK
                     SNISVNLAIALSQLNYSVMLLDADLGLANVDIMLGLHTKYNLSHVLQGICHLSDIILH
                     GPAGVRVIPAASGTEFMTQLSPAEHAGIIDSFNELTDDLDYMIIDTAAGISETVLSFT
                     RSSQELIVVVCDEPTSLTDAYALIKVMSKRYEWTHFHILANMVRNVKDGRDLFNKLFR
                     VSGQFLDVQLDYLGAIPFDENIHKSVKKQNPILIAYPDSPAAHALRELAESVSNWSFK
                     PSLGGNTSFFLERLVAGQF"
     gene            complement(3185..4345)
                     /gene="flhF"
                     /locus_tag="JBH85_10685"
     CDS             complement(3185..4345)
                     /gene="flhF"
                     /locus_tag="JBH85_10685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HAU0946667.1"
                     /translation="MLKAGGIMKLKRFVAADTRSAMQQIKAAFGPDAVILSSHNIKDG
                     VEIVAAIDFDETVISTQAAVAIAEPPSRTEKYSAQTPLDEMRQEILTLRGMLEAQLRG
                     NVGIHEPLHTVMLQKLLYLGVSPNTATIWARSVKPDLNQQRAWQFILSQVTEQLPIRD
                     SSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLIL
                     YGKILGVKVCIAQDEVSLARVLRQLNDKKLILIDTAGMNPSDERVTKQMTVLSNYLQS
                     IEKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGY
                     LTDGQRVPEDIKIATRHQLVELFAQQELQLFQEERDISKIHPNVRRENYVEA"
     gene            complement(4365..6443)
                     /gene="flhA"
                     /locus_tag="JBH85_10690"
     CDS             complement(4365..6443)
                     /gene="flhA"
                     /locus_tag="JBH85_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HAU0946668.1"
                     /translation="MNNVMNYIEYWMRQGFGTPLILIVMISMMMLPLPPFLLDIFFTF
                     NIALSLVVLLAVIYSERPLDFAVFPTVILVATLLRLALNVASTRVVLLNGHNGTDAAG
                     QVIKSFGEVVIGGNYTVGIVVFIILVVINFVVVTKGAGRVSEVSARFTLDALPGKQMA
                     IDADLNAGLINQEQAIKRRTEVAQEADFYGSMDGASKFVRGDAIAGILVLIINIVGGL
                     IIGIFQYNMNFNDAVHNYILLTVGDGLVAQVPSLLLSTAAAIIVTRVSSAQNMGQAVI
                     SQVFAKPRSLVIAAAIIGLIGIIPGMPHIAFILLSAGLAGIAYLFINQEKVKREQQDK
                     EQNEFSQTSDSKLSELSWDDVNPVDVIGLEVGYRLIPMVDNAQGGILLSRIKGVRKKI
                     SQELGFLIPSVHVRDNLDLKPNHYRLSLAGVIMGESMIHPDKWLAINPGQVFGNLEGI
                     PTRDPAFGMDAVWINENQKEKAHTLGYTVVDASTVVATHLSMILEQNSQQLLGYEETQ
                     QLLDKLAISSPKLVKELVPDGLTLGMVSKVLQGLLSEHIPLTDIRTIVETLAEYASKS
                     KDTEYLISQVRIALSRLITQKISGLNEELPIITLKPELEQLLHNTLQNSGHGGVSFEP
                     GMADKIQQALIQFAAQQQAKQESSVLVVQPSIRTVLARFVRTISNDFHVLSYQEIPDN
                     KQIRIIGTVG"
     gene            complement(6440..7591)
                     /gene="flhB"
                     /locus_tag="JBH85_10695"
     CDS             complement(6440..7591)
                     /gene="flhB"
                     /locus_tag="JBH85_10695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HAU0946669.1"
                     /translation="MMADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFT
                     GLGFFIFGKQLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVI
                     FILSLLAPLLMGGWVFSGQSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVAS
                     ASILVLRSQVPLLLELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEH
                     SKSIKMTKQELKDEYKETEGKPEVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYA
                     VALSYQKKGKKAPVVIAKGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEI
                     PRGLYVAVAQVLAYIFQLRDRQRYDYKPEILQNVPIPPELAREAEEEIE"
     gene            complement(7588..8358)
                     /gene="fliR"
                     /locus_tag="JBH85_10700"
     CDS             complement(7588..8358)
                     /gene="fliR"
                     /locus_tag="JBH85_10700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HAU0946670.1"
                     /translation="MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKIL
                     FVFTLSCVCFTYVPHNLSFENFNGLYLVYLVQELLLGLLMGFVLQIVFQVFILGGQII
                     SMQAGLGFAVMVDPTSNASVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIG
                     KSSLDPSVVWSTIMFSGWMFKEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGF
                     PITLLMGFVIIKIGLPTVGTEMVESIKHGIQFITGILR"
BASE COUNT         2593 a         1871 c         1415 g         2498 t
ORIGIN      
        1 gaatttgtat tacttataac actaaaatgg actctactta aatctggatt gagaattctg
       61 tccacttttc tatttttagt gataagaata ttcactcttc gattctggct tcttccagct
      121 tcagtgtaat tgtccgttat tgggtattga tcaccatatc ctgtaaccaa aatacgatga
      181 ttggcaattc caaaaccatt taaaatgcga ccaacagtag ctgctcttgc agctgataat
      241 tcccaatttg aagggtattg gggcgtttca ataggcacat tatcagtgta tccctcaaca
      301 accactgtaa aaggtagatt cttaattttc tccgccagct tcattagttt aatcaatgct
      361 tctggtttaa tatcagcact accagaatca aataatgagc ctgcttttat atctatctca
      421 acccatccct cttgtctgtt taatttgaaa tcaccatctt caagttcaga tagtgattta
      481 ttcagttcat ccaaaccatc tttaaaagtt cccttggtct tcttttcttc aggaccatct
      541 ttaaggttat ctgtcgattg agtcgcttta ttttgatcct tttgattaaa tgccgacttc
      601 attccttcag aaagagattt atattttgat acatttactg aagaaatagc atacatcaca
      661 acaaaaaaag caaataataa ggtaatgaaa tcagcataag atacgaccca tcgatgacta
      721 tcctgatgtt cttcagtttt cttttgtttt gatttcatct tgcttgtgtt gcccatagtt
      781 gtttaacttt aactgcagca tattgggact ctcaccactc gccatggcga ccaggccttc
      841 aacgaccatt tcatcaaaat gcaccttatg agaaatacaa ctttttaatt tattagcaac
      901 aggtaaaaaa aacagattcg cgaacccaac accataaata gttgcaacaa aagcaaccgc
      961 aatgcctaaa cctaattgac tgggatcagc gagattcctc atgacttgaa ttaaacccaa
     1021 caccgcacct aaaattccta tggtggggct atagccgccc atgctttcaa agacatgcgc
     1081 agcacgcaaa tcctgatgct ccgttcgatc tatttctgct tccaaaactt gtcgtaaggt
     1141 aagcttgtcc actcctgtaa ccagtaattc caacccctta taaattaaag gattggtttc
     1201 gacatccaaa cgatcttcta gggagagaag gccaagttgg cgagcttttc tagataactc
     1261 tatgagagtc gttctgcatt cttcaaaatt atgatgagga ggtttcacta cccaaggcaa
     1321 tattctaaac gcccttttaa aagtggttaa aggagtttgc accataacag cccctaatgt
     1381 tccacccatg acaatcagta aggccggaaa attaagtaag gaatttaaat ctcccccctc
     1441 aaaaatttgg cctacgataa tggcgagaaa acctgtcaac aatcctatta aagtcaaagt
     1501 atccatactt attttttatt ccggtaatct tgatctaata cggtgcgttg cttgacttaa
     1561 aatctgtgaa attcgtgact cactaacctc cagtatttcc ccgatttcct tcaaattcaa
     1621 atcctgctca taatacaaag aaagcaccag cctctcttta cgagggagac tatcaatcac
     1681 ttgggttaat cgattcatca tatcacttcg cataacattc ctgtgcggtt cagttgagcc
     1741 attcccttca tgatcaaata agacatcatc ggttactccc aagtcatcaa aaccatataa
     1801 atgactgcta atggagtctt gcaacatatc atgataatca tctaatgaca cacctagctc
     1861 ttcagcaatt tcattatcct tagcctcacg cccaagttta tgctccaata tgcgcacagc
     1921 atcagaaatc attctggaat tgcgataaac agaacgcggc acccaatcat tacgtcttac
     1981 ttcatcaagc atatgtcccc tgatacgtat tcctgcataa gtttcaaagg atgccccctt
     2041 ggatgaatca taatgtcttg ctgcttcaag cagaccgagc atccctgatt gtatcaagtc
     2101 atccagttgt acactctgcg gtaatcgccc gagcagatga tgtgcaatgc gttttaccaa
     2161 tgtggcatgt gtttttacca gagcttcctg ggtttgttga tttactttgc tgtatgcagc
     2221 caaagcatcc acgatactct ccttacaata acagcagatt gtagttatta gtaatttggt
     2281 aaatctaaaa caaacagagt acagctaatt ttaagtatag cgaataattt aaaattgtcc
     2341 cgcaaccaaa cgctccaaaa agaaactggt gtttccacct aaagacggtt taaatgacca
     2401 attactcacc gattcagcta attctctcaa ggcatgagca gcaggtgagt cgggataagc
     2461 gattaaaata ggattttgtt tttttactga tttatggatg ttttcgtcaa aaggaatcgc
     2521 gccgaggtaa tctaactgca catccagaaa ctgtcctgag acccgaaaca gtttattaaa
     2581 caggtcacga ccatccttaa catttctaac catattagcc agaatgtgga aatgcgtcca
     2641 ctcataacgt ttgctcatca ctttaattag tgcataagca tctgtcaaag aagtaggttc
     2701 atcacagaca acaacaatca attcttgcga tgaacgagta aaactcaata cagtctcgga
     2761 aatccctgct gcggtatcaa taatcatata gtccaaatca tcagttagtt cgttaaatga
     2821 atcaatgatt cccgcatgtt ccgcaggact caactgcgtc ataaactctg ttccggaagc
     2881 agcaggaata accctgacgc cagcgggacc atgtaaaata atatcactta aatgacatat
     2941 gccttgaaga acatgagata aattgtattt ggtatgcaac cccagcataa tatccacatt
     3001 tgccaaacct aaatcggcat ccagaagcat aacactataa tttagttgag ataacgctat
     3061 ggctaaattg accgagatat tacttttgcc tacaccgcct ttgcccgctg aaacagcaat
     3121 cactttgaca ggtttgtttc gggacaaatt tctaagacca gaagcctgat cttttatacc
     3181 tttgctaagc ttcgacataa ttctctctcc taacattcgg atgtattttg ctgatgtccc
     3241 tttcctcctg aaataactga agttcttgtt gcgcaaataa ctcaacaagc tggtgacgcg
     3301 tagcaatttt gatatcctcc gggactcgtt gtccatcggt taaataaccc aaggctaaat
     3361 ttgattcaat aacagcactt atggctccac ctactgcaag agattcatcc aatttcgtaa
     3421 taatgcactg atccacatga tttgcctggt aacgcttaat cgcatcgatt aatacctggt
     3481 aatgactggt agctggtaat accaatactt tttctataga ttgcagataa ttacttaaaa
     3541 cagtcatttg tttggttaca cgttcatcag aaggattcat accggctgta tcaatcaaaa
     3601 ttaatttttt gtcatttaat tgacgcaata ctcttgccaa agagacttca tcttgcgcaa
     3661 tacagacttt aactcccaaa atcttcccat agagaattaa ttgttcctga gctgctattc
     3721 ggtaggtgtc catagtgacc aaacccaact tatcagcacc aaatcgtaaa gcaaagcgtg
     3781 ctgcaatttt tgctagagtt gttgttttac caactccagt tggaccaaca aacgcgtaga
     3841 taccaccttc ttctattcta ctagaatcac gaattggcaa ttgctctgtg acttgtgaca
     3901 aaataaattg ccaggctctt tgttgattca aatcaggttt tactgagcga gcccaaattg
     3961 tcgccgtatt gggactaaca cctaaataca agagtttttg cagcataact gtatgtaaag
     4021 gctcatgaat accaacattt ccacgcagct gtgcttcgag cattcctctc agtgtcaaaa
     4081 tttcttgccg catttcgtct aatggcgttt gcgctgaata tttttctgtt cggcttgggg
     4141 gttctgctat agctacagca gcttgagttg atatcactgt ttcgtcaaaa tcaatagcag
     4201 caactatttc aacaccatct tttatgttat ggcttgacaa aataacggca tcagggccaa
     4261 atgcagcctt tatttgctgc atggcactgc gagtatctgc agcgacaaag cgttttaatt
     4321 tcataatgcc tcctgccttc aacacaccta tgcaacccca aaaactaacc tacagttcca
     4381 attattctta tttgtttgtt atcaggtatt tcctgataag acaaaacatg aaagtcattg
     4441 gatattgtac gcacaaatcg tgccaaaacc gttcgtatac ttggttgaac taccaaaact
     4501 gagctctcct gctttgcctg ttgttgtgca gcgaactgga ttagtgcttg ttggatttta
     4561 tctgccattc ctggctcaaa gctaactccg ccatgtccac tgttttgtag agtattgtgc
     4621 aacaattgtt ccaactctgg ttttaatgta ataatgggca attcctcgtt taatccactg
     4681 attttctgag ttatcaatcg tgataaagca attctcactt ggctaatcaa atattccgta
     4741 tcttttgatt ttgacgcata ttccgccaaa gtttcgacta tagtgcgtat gtctgttaat
     4801 ggaatatgtt ctgataataa tccctgcaac actttgctaa ccatacctaa agtaagtcca
     4861 tcaggtacaa gctctttaac cagtttaggg gaacttatgg ccaacttatc caatagctgc
     4921 tgtgtttcct catagccaag taattgctgg ctgttttgtt ccaggatcat gcttaaatga
     4981 gtagcaacta ctgttgatgc atcaactact gtataaccta aagtgtgtgc tttctccttt
     5041 tgattttcat ttatccacac agcatccatt ccaaaagccg gatctcttgt tgggattccc
     5101 tctaaattac caaatacctg tccggggttt attgctaacc atttatcagg atgaatcatt
     5161 gattccccca taatcacccc agccaaactt aatctgtaat gattaggctt taaatctagg
     5221 ttgtcacgaa catgaacgga tggaattaag aaacccaact cttgcgatat tttctttcgg
     5281 acacctttaa ttcgcgaaag taatattcca ccctgagcat tatcgaccat agggatcaat
     5341 cgataaccta cttccaaacc aatgacatcg acaggattaa catcatccca tgataactca
     5401 ctcagtttag agtcactggt ttgtgaaaat tcattttgct ctttatcctg ctgctcacgt
     5461 ttaacttttt cctgattgat aaataaataa gcaataccgg ctaaccctgc tgataataga
     5521 ataaatgcaa tatgaggcat accaggaatt atacctatta gaccaataat agctgctgca
     5581 atgacaagtg atcttggttt tgcaaatact tgagaaataa ctgcctgccc catattttgg
     5641 gcgctagaaa ctcgggtcac aatgattgcc gctgcagtag acaataagag ggagggaact
     5701 tgagcgacca aaccatcccc gactgtcaat aaaatataat tatgaactgc gtcattaaaa
     5761 ttcatattgt attgaaatat gcctattatt aatccaccaa cgatgttaat gattaaaacc
     5821 aaaattcctg ctatggcatc ccctcggacg aatttactgg caccatccat tgaaccgtaa
     5881 aaatccgctt cctgagctac ttctgttcga cgcttgattg cctgttcctg attgattaga
     5941 cctgcattga gatctgcatc gatagccatt tgctttccgg gtaaagcatc caaagtaaac
     6001 cgcgcactta cttcagatac tctccccgcc ccttttgtca ctacaacaaa gttaataacg
     6061 acaaggataa taaataccac tatacctact gtgtaattac ctccaatcac cacttcacca
     6121 aaagatttta tgacctgacc ggcagcatct gtaccattat ggccattgag taagactact
     6181 cgtgtagaag ctacattgag agctaatctt aacaaagttg ccacaagtat cactgtggga
     6241 aacaccgcaa aatccagggg tctttcacta taaataactg ccaacaaaac aactaaagaa
     6301 agagcgatat taaaagtaaa aaatatatcc agtaggaaag gaggcagagg taacatcatc
     6361 atgctgatca tgacaatcag tattaatgga gtaccaaacc cttggcgcat ccaatattct
     6421 atataattca taacattgtt cattcaatct cctcctctgc ttcgcgagcc agttcaggtg
     6481 gaatagggac attttgtaaa atttcaggct tataatcata acgttgcctg tcacgtagct
     6541 gaaaaatata ggccagcacc tgagccacag caacatataa ccctctggga atttctgcat
     6601 tcagttttgt tgaaaaataa atagcgcgag ctagtgcagg aactgaaata atagggatct
     6661 tatgctcttt agcaaccttg gatatctgaa aagcaaccag gtttttaccc ttggcaatca
     6721 ccactggagc cttttttcct ttcttttggt aactaagagc aactgcatag tgcgtaggat
     6781 tagtcaatat gacgtcggct ttaggtactt cactcatcat ccgtcgtctt gcagtctcct
     6841 gctgtgcgcg acgtatagcg ctttttacct caggtttgcc ttccgtctct ttgtattcat
     6901 cttttaattc ctgtttagtc atcttaatcg atttactatg ttcatataat tggaatggaa
     6961 catctattgc cgcaattaat atcagacttg cagaaatcag cacaaaagat tttaaaagga
     7021 tcattacccc actagtgatt gctatttcta atggtgcttt ccccaactca agcaacaagg
     7081 gtacttgcga tctaagcact agaatagatg cgctagccac caggacaaat tttaaaaaag
     7141 ccttaagcat ctcaacaaat cctttgagag aaatcatgcg cttaagccct ttaagtacat
     7201 ttaatcgaga aaattttggc tgtatagact gtccactaaa aacccatccc cccataagca
     7261 atggtgctag caaagacaaa ataaaaataa caagcaatag tggaacaaca gaccaaagcc
     7321 ctgattttgt taattgaaac aaattttcta aagaattatt cccggtaaca agaatgtcac
     7381 gatcgaaatc aaacgcctgt tgcattatac tggcaatttg cagtgataat tgtttcccaa
     7441 aaataaagaa accaagtccg gtaaataata aaatgaccgt tgcattaaaa tctttggaac
     7501 gtgcaacctg cccctttttt cgtgattctt ttaatcgctt ggaagaaggc tgttccgttt
     7561 tttcttgtga ttgttcttca tcggccatca gcgcaatatt cctgttataa attggattcc
     7621 atgcttaatg ctctctacca tttctgtccc gacagtgggc aaccctattt taatgatgac
     7681 aaaccccatc aatagcgtaa tcggaaaacc taaagagaaa aggtttaatt gcggagcaac
     7741 ccgagccata actccaaaag acaagcttac aataagcaaa gataaaatcg caggtattga
     7801 aatcaatacc gcttctttga acatccaccc tgaaaacata atcgtactcc agacaactga
     7861 tggatccaga gaagatttac cgattggcat tattctgaaa ctctcgatta gagtttcaag
     7921 aatagccaaa tggccattca atgccaaaaa tattaatgtg gtcaccatta aatacaattg
     7981 actgattaaa ggcacactag cattgctggt tggatcaacc attaccgcaa atcccaaacc
     8041 cgcctgcatg gatataattt gccccccaag aatgaatact tgaaatacta tttgcaacac
     8101 aaatcccatt aacaaaccca ataataattc ctgtacgaga tagacaagat aaaggccatt
     8161 aaaattttcg aaagacaagt tatgaggcac ataggtaaaa cacacacagc ttaaagtaaa
     8221 aacaaagaga attttaatgc gtgccggtaa tagtgctgaa gataaaactg gcaccgtaag
     8281 catcaaacca ccaatacgca ccatgggcca tataaattgg ctcattaagc gaatcatagt
     8341 ttgataatcg agattcattt tttatccaat caaataa
//
LOCUS       DACVWI010000130         8305 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.130, whole genome shotgun sequence.
ACCESSION   DACVWI010000130 DACVWI010000000
VERSION     DACVWI010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8305
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.130"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(10..1281)
                     /locus_tag="JBH85_10705"
     CDS             complement(10..1281)
                     /locus_tag="JBH85_10705"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HAU0946671.1"
                     /translation="MLTGLRYSLREDRSIIYTGFNDMIVQDSVCSELMRGCEEILPVP
                     ELEKKLQKGIPLKIKAGFDPTAPDLHLGHTVLLNKLRQFQQFGHEVIFLIGDFTAMIG
                     DPTGKNVTRMPLSQETVLENAKTYQHQVFKILDPDKTTVAFNSQWLNKFNAVDLIRLA
                     ATHTVARMLERDDFNKRYTTGQPIAIHEFLYPLLQGYDSVALKADVELGGTDQKFNLL
                     MGRELQKHYGFEPQVVMMTPLIEGLDGVKKMSKSLDNYIGINETPEQMFGKIMSVSDE
                     LMWRYIDLLSFKTGKEIQQLKQSVLEGKNPRDVKIDFAKEIVARFHDQTQAEFAHNKF
                     IERFQKGNIPEDLEELSLVIAEPIALAQLLKQIDLTASTSESIRMVKQGAVKVDGDKI
                     SDPSLKLPIGKSYIIQVGKRRIAKLSIQQAD"
     gene            1472..2905
                     /locus_tag="JBH85_10710"
     CDS             1472..2905
                     /locus_tag="JBH85_10710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HAU0946672.1"
                     /translation="MDKRPNIPKRKSGNSSKLLAFFALVFAFSLPYLLVKNFSHPKRS
                     SYADQTDLYPELSDELSRDIPAEASTEIPHEKPDIKSATKPMQTKQDQQDKPINTSHV
                     KKDNEWQIVNPHSGDSMATIFHRLGLTAQNLNDVIKNNPHAKMLTRIKPNQKLQFLIK
                     KNKLEKLIVPVNTIQTLTVYRAGKIYKTKIDSKKTTTQNRYVTATVQGSLYTTAQRFN
                     IPSKLVRQMTTIFNKEIDFSRSLRSGDQFSIIYDAYYIEDKMVGVGDILVVTYTNRGK
                     TYQAIRHTNAHGEQDYFTPQGTSFKKAFTRYPIKFSHISSTFALSRYHPILHYRRAHK
                     GIDLAAPIGTPIHATGDGVITIIDRHNGYGNMIKIKHDKTYSTIYGHLLKFQKGLSKG
                     SRVKRGQVIGYVGQTGLATGPHCHYELHVNNQPRNPTTISLPTAAPVPAREMAAFKAK
                     ASTLLARLKLFEQAQLASKGKKKVNVG"
     gene            complement(3036..3569)
                     /locus_tag="JBH85_10715"
     CDS             complement(3036..3569)
                     /locus_tag="JBH85_10715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore maturation protein"
                     /protein_id="HAU0946673.1"
                     /translation="MNGFANHLSNWLFLTFIVGIPLYAAIKKVNVFDAFIIGAKQGFD
                     VSVKLIPYLVAMMVAIGMLRASGFFSLMSQILSPALTMIGMPSELLPLALIRPFSGSA
                     STGVMAELIHKYGGDSFIAKTAATMMGSTETTFYVIAVYFGSVGIRRTRHAIPAGLLA
                     DLAGIIASVLICRYLFT"
     gene            complement(3566..4183)
                     /locus_tag="JBH85_10720"
     CDS             complement(3566..4183)
                     /locus_tag="JBH85_10720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore maturation protein A"
                     /protein_id="HAU0946674.1"
                     /translation="MEAIMLNLIWLGMILISVVVGVIEGRIDEVVRAVTDSAKLGFEL
                     ALGLAGIMTFWLGIMSVATESGLVSILGKVLKPVLKRLFPDIPVEHPAMGAMVMNIAA
                     NMLGLANAATPFGLQAMKELQSLNQNLKVATNSMCTFLAINTSSVQLIPVTAIAFLAA
                     NGSTNPSSVVFTSLIATTVSTLVAIVAVKQLAKLPRFKIERTDSL"
     gene            4241..5311
                     /locus_tag="JBH85_10725"
     CDS             4241..5311
                     /locus_tag="JBH85_10725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1460 domain-containing protein"
                     /protein_id="HAU0946675.1"
                     /translation="MKHTYNPFRYLIYFAFFITSLSSYSSQTTNIKEQTDTGLAPPAP
                     AITTNSAAIEEQANSSIRKLYHTLNTMPNTSMADRISQISAYFKGTKYILGSLGEGPN
                     ARYDQFPRYRVDGFDCDTYVNTVLSLALANSLESFQECLKHTRYKNGKRSYINRNHFT
                     SIDWNNYNQKRGLLKDITFSIRNEKKQPVALYANALINKPQWYNHKTIDTIRLQKQDK
                     NEQEKRLVELKAKGKTLETSLSNVPYIPFTALFSENKPNLHLFSQIPNGAVIEIIRPN
                     WDLRQQIGTELDISHLGFAIWINNELFFRQASSQYGKVVDVSLIDYLDKARSSPTIKG
                     INIQVVLPEKPVSNGCQLFDIR"
     gene            complement(5556..5912)
                     /locus_tag="JBH85_10730"
     CDS             complement(5556..5912)
                     /locus_tag="JBH85_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HAU0946676.1"
                     /translation="MTNNKDKVYYYIVQCNNMENIMTQYNFERWSEMAKKIQEPFQAI
                     AELNVKTLQGLSYLKPDELAQVKKPEEMLEKQINLAVENGHKALDYMQKSFQIIEKAM
                     LSFVQEAKKTTAEVKK"
     gene            complement(6057..6455)
                     /locus_tag="JBH85_10735"
     CDS             complement(6057..6455)
                     /locus_tag="JBH85_10735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate biosynthesis repressor
                     PhaR"
                     /protein_id="HAU0946677.1"
                     /translation="MTRLIKKYKNRRLYDTEISQYITVEQLQKYVVDGIDFKIEDSET
                     GKDLTNSVLLQIIVEMEAGPTQFLSSEILRQIISLANHPMHVSFKEMMEQMFHAMDKP
                     LQNNPYQQATEAWNKQMQQMVHQWQKMFKV"
     gene            complement(6585..7331)
                     /gene="phbB"
                     /locus_tag="JBH85_10740"
     CDS             complement(6585..7331)
                     /gene="phbB"
                     /locus_tag="JBH85_10740"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HAU0946678.1"
                     /translation="MLNNNVVLITGGTGDIGTAVAKQLDSTFKHVIALDLVSYDEGEA
                     WLHDLKTQGYKNINFRHMDVTDYEQCAEVIGLIIEEFGGIDVLINNAGITRDAVFTKM
                     TKRQWDEVLRVNLDGMFNVTKQVVESMKAQESGRIVNVSSVNAQKGQFSQANYAASKA
                     GVYGFTKSLAQELMIKNITVNSISPGYVNTRLMKGIRPDILEGIINLIPAKRLAEPQE
                     IAWAIEFLISEKSRYITGANLSVNGGLHMY"
     gene            complement(7510..8256)
                     /gene="phbB"
                     /locus_tag="JBH85_10745"
     CDS             complement(7510..8256)
                     /gene="phbB"
                     /locus_tag="JBH85_10745"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HAU0946679.1"
                     /translation="MSMDKMIAIVTGGTGGIGSAISQRLADSYQVVACYYKDGRHEEA
                     KKWQDEQRQLGYDIDIVYGDIAQYSDCEKITSLVMERYGRIDVLVNNAGITKDCSLRK
                     MTPQQWQQVLDANLTSVFNMTRNVVPVMLERGYGRIVSISSINGRKGQFGQCNYASTK
                     AALFGFTKSLALEVASKGITVNTVSPGYIETPMLAALKEDVLNSIISSIPVGRLGYPK
                     EIADAVAFLASPDSGFITGANLDVNGGQYM"
BASE COUNT         2681 a         1752 c         1305 g         2567 t
ORIGIN      
        1 aaaattatct cagtctgctt gttgaatact cagtttggca attcgacgtt ttccaacttg
       61 aatgatataa gacttgccaa tgggtaattt tagggaagga tctgaaattt tatccccatc
      121 cactttaaca gccccttgtt tcaccattct tatagactct gatgtgctgg ctgtcaaatc
      181 aatttgcttt aataattgtg ctaaagctat aggctctgca ataactaacg acagttcttc
      241 caagtcttca ggaatatttc ctttttgaaa tcgttcaata aacttgttat gagcaaattc
      301 ggcctgagtt tgatcatgaa atcgcgcaac aatttctttg gcaaaatcaa tcttaacatc
      361 tctgggattt ttcccttcta atacagattg ttttaattgt tgtatttcct tgcctgtttt
      421 aaagcttaat aaatcaatat atcgccacat taactcatca gaaactgaca taatttttcc
      481 gaacatttgc tcaggtgttt cattgatccc aatgtaatta tcaagggatt tcgacatctt
      541 ctttacacca tccaaaccct ctatcaatgg tgtcatcatg acaacttgag gctcaaagcc
      601 ataatgcttc tgtaattctc tacccatcaa taaattaaat ttctgatcag taccgccaag
      661 ttcaacgtca gcttttaatg ccaccgaatc ataaccttgt aacagcgggt acaaaaattc
      721 gtgaattgcg ataggctgtc ctgtagtata acgtttattg aaatcatctc gttccagcat
      781 tcttgccact gtatgtgttg cagccagtcg aatcaaatca accgcattaa atttattaag
      841 ccattgtgaa ttgaaagcca cagtagtctt atcagggtca agaattttaa atacctggtg
      901 ttggtaggtc tttgcatttt ccagaaccgt ttcctgactc aatggcattc gggttacatt
      961 ttttccagtc ggatcaccaa tcatggctgt gaaatcacca atcaaaaaaa taacctcatg
     1021 accaaattgc tgaaactgcc tcaatttatt aagcagtaca gtatgtccca aatgaagatc
     1081 tggcgctgtt ggatcaaaac ctgcctttat tttcaatggg ataccttttt gtaatttctt
     1141 ctccaactca ggtacaggaa gaatttcctc acacccccgc attaattcgg aacaaactga
     1201 atcttgaact atcatgtcat taaaacccgt ataaatgatt gacctatctt ctcgcagcga
     1261 gtatcttagc ccggttagca atttcctgct ataccaaatg atacattttg agataattta
     1321 ttactctaaa ttgagaaaaa tataacaaaa tatccaaata agagtcgatt tagttgactc
     1381 aaggtagcgg tcacttccaa ataatgactg tgatatattg attgaaattt aaatagcagc
     1441 atttttcaga tgacggcaat ataggcaaaa aatggataaa agaccgaata taccaaaaag
     1501 aaaatctggt aactcatcaa agctattagc gttttttgcg ttggtatttg ccttttcgct
     1561 tccgtatttg ctagtgaaaa atttttcaca ccctaaacga agcagttatg ctgaccaaac
     1621 tgatttatac cccgaactat cagacgagtt atcaagagat atacctgctg aagcttccac
     1681 ggaaattccg catgaaaaac ctgatattaa atctgctaca aaacctatgc aaacaaagca
     1741 agatcagcaa gacaaaccaa tcaatacaag tcatgtaaaa aaagataatg aatggcaaat
     1801 agtcaatcct cattcaggag attctatggc gaccattttc cataggctag gactaaccgc
     1861 gcaaaattta aatgatgtga taaaaaataa cccgcacgcc aagatgctta caagaatcaa
     1921 acccaaccag aaattacaat ttttaattaa aaaaaataaa ttggaaaaat taattgttcc
     1981 tgtaaacacc attcaaacac taacagttta tcgcgcaggg aaaatataca aaaccaaaat
     2041 tgactcaaaa aaaacaacca ctcaaaatcg ttatgtgact gcaacagtcc aaggttcttt
     2101 gtatacaaca gcccaacgat ttaacatccc ctcaaaatta gtccgtcaaa tgaccactat
     2161 ctttaacaaa gaaattgatt tttccagatc tttgcgctcc ggagatcaat tctcgataat
     2221 ttatgatgct tattacattg aagataaaat ggttggagta ggagacattc tggtagtaac
     2281 gtatactaat cgtggaaaaa cttatcaagc aatacgtcat actaacgctc atggtgagca
     2341 agactatttt accccacaag gcaccagctt taaaaaagcc ttcactcgat atccaattaa
     2401 atttagccat ataagctcga cttttgcttt atcgagatac cacccaattc ttcattacag
     2461 acgagcgcac aaaggtatcg atttggctgc cccgattgga acaccaatac atgctaccgg
     2521 cgatggggtt attacaatca tcgataggca taacggatat ggcaatatga ttaaaattaa
     2581 gcatgataaa acatacagca ctatttatgg gcatttactc aaattccaga aaggtctatc
     2641 aaaaggcagt agagtaaaac gaggtcaagt aattggttat gtaggacaaa ccggcctggc
     2701 aaccggacct cattgccatt atgagcttca tgtcaataat cagccaagaa acccaactac
     2761 aataagcttg cctactgcag caccagtacc agcaagagaa atggcagcat tcaaagcaaa
     2821 agccagtaca cttttagccc gtctaaaact tttcgagcaa gcgcaattag caagtaaagg
     2881 gaaaaagaaa gttaacgttg gataaaaact gtgcgttgga tttttccata ccccaatacc
     2941 taatctaaat gacagcagac acttctttat aaagcgagta agctccaagt aattcaaaca
     3001 taacgttact ctttttgtgt taaaaaaatc ttatatcatg taaataaata tcgacaaatc
     3061 aaaaccgagg caatgattcc agctaaatct gccaataatc cggcaggaat agcatgtctt
     3121 gttcttctga tacccacaga cccaaaataa acggcaatca cataaaaagt agtctctgta
     3181 cttcccatca ttgttgctgc ggtttttgcg atgaatgaat ctcctccgta tttatgaatc
     3241 agctctgcca taactcctgt tgaagcactt ccagagaatg gtctaataag agctaaaggt
     3301 aataattcgg aaggcattcc tatcatagtc aacgctggcg ataagatctg actcattaag
     3361 gaaaaaaaac ctgaagctct tagcatgcca atggcaacca tcatcgcaac taaataaggt
     3421 ataagcttta cgctcacatc aaaaccttgt tttgctccaa ttatgaaagc atcaaataca
     3481 tttacttttt taattgcagc gtacaaaggg ataccaacga tgaaagtcaa aaacaaccaa
     3541 ttggataaat gattagcgaa tccattcata agctgtctgt cctttcaatt ttaaatcgcg
     3601 gtaatttagc caattgtttt acagcaacga tagctaccag agtagaaaca gtagtcgcga
     3661 tcaaagaagt gaagaccaca ctacttgggt ttgtgctccc gtttgcagca agaaatgcga
     3721 tagcggtgac tggaattaat tgcacactgg aagtgtttat tgccaagaaa gtacacatgg
     3781 aattcgtggc aactttcaaa ttctgattaa ggctctgcaa ttctttcatt gcctgcaatc
     3841 caaaaggggt cgcggcatta gcaagaccca acatgttcgc agcaatattc attaccattg
     3901 ctcccattgc aggatgctca acaggtatat caggaaataa tcgctttaac accggtttga
     3961 gtactttacc taaaatagaa actaaacctg attctgtagc aaccgacatt attcctaacc
     4021 agaaagtcat tatcccagcc aaaccaagcg ctaactcaaa tcccagcttg gcagagtcag
     4081 taactgctct taccacctcg tcaatacgcc cctcaataac tccaaccacc actgaaatca
     4141 gtatcattcc taaccatatt agattgagca ttattgcctc caacctctga aaaaggttaa
     4201 tatgtaacca aaattagatt taaaatacca atcaggactt atgaaacata cttacaatcc
     4261 cttcagatac ttaatatatt tcgctttttt tatcaccagc ctttccagtt atagcagcca
     4321 aacaaccaac attaaggaac aaactgatac aggtttagcc ccacccgccc ctgcgattac
     4381 cactaactca gctgctattg aagaacaggc taattcttca attaggaaac tatatcacac
     4441 actcaatacc atgccgaaca cttctatggc agatagaatt agccagatca gcgcatactt
     4501 taaagggaca aaatatattc ttggctcttt gggcgaaggt cccaatgctc gttatgacca
     4561 atttcccaga tatcgagttg atggctttga ttgtgatacc tatgtcaata cagtactttc
     4621 tctagcctta gctaactccc tggaatcatt ccaggagtgt ttaaaacata ctcgctataa
     4681 aaatggaaaa agatcttata tcaacagaaa tcattttacc tctatagact ggaataacta
     4741 taaccagaag agaggtttac ttaaagacat taccttctct atcagaaatg aaaaaaagca
     4801 gcctgttgct ctttatgcta atgccttaat caacaaacca caatggtata atcataaaac
     4861 gatcgatacc attcgattgc aaaaacaaga taaaaatgag caggaaaaac gtcttgtgga
     4921 actaaaggcc aaaggtaaaa cgctggaaac ttctctttct aatgtccctt atattccgtt
     4981 cactgccttg ttttcagaga ataaacctaa cctgcattta ttttcccaaa ttcctaacgg
     5041 ggctgttatc gaaattatca gacccaattg ggacttacgc caacaaatag ggacagaatt
     5101 agatatttcg catttaggct ttgctatttg gattaataac gaactgtttt ttcggcaagc
     5161 ctcttctcaa tatggtaaag tagttgatgt atccttaatt gattaccttg ataaagcacg
     5221 cagtagccca actataaaag ggattaatat tcaagttgta ttgcctgaaa aaccagtatc
     5281 caatgggtgc cagctttttg atattcgata gcttataaat taatatctta atggttaacc
     5341 tatagttttg cgtaattacg cgcgtataac cattatttat ttcatgaaat agccagtgtt
     5401 tttattaacg agatactcgt gtttcttaat aaaaaaatcg atttctattt taattgactc
     5461 gcttgggtat tatctagcag ttggcggctg gaaatatgct caatgatatg aaaatagaaa
     5521 aggcttattt tgatcaaata agccttttaa aggaattatt tctttacttc agcagttgtt
     5581 tttttagctt cttgtacaaa acttaacata gctttttcaa taatttgaaa tgatttttgc
     5641 atataatcca aagccttgtg gccattttcc actgccaaat taatttgttt ttccagcatt
     5701 tcttcgggct ttttaacttg agccagttca tcaggcttca aataacttaa cccttgcagg
     5761 gttttaacat tcagttcagc aatggcctgg aaaggctctt gtattttttt tgccatttca
     5821 ctccatcttt caaaattgta ttgagtcata atattctcca tattgttgca ctgcacaata
     5881 taatagtaga ccttatcttt attgtttgtc aatatcttat ctaattattt tttgcagtgc
     5941 accaaaaatc acgattaaat tcatggattt ttgatgtgta ttgcgctttc caaatcacca
     6001 gtaaaactcg taaaacgaaa cgttctatta actacaaaaa agtttgggag gaatttttag
     6061 actttaaaca ttttttgcca ttgatgcacc atttgttgca tttgcttatt ccaggcttca
     6121 gtcgcttgct ggtaaggatt gttttgtaaa ggtttgtcca ttgcatgaaa catttgttcc
     6181 atcatttcct taaaggaaac atgcattgga tgattagcta atgaaatgat ttgacgtaaa
     6241 atttctgaag acaaaaattg cgttggtccc gcctccattt ccactataat ttgcaacaga
     6301 accgaattag ttaaatcctt tcctgtctct gaatcttcta tcttgaaatc aataccatct
     6361 acaacatact tttgtagttg ctcaacagta atatattgac taatttcagt atcatacagt
     6421 cttcgatttt tgtatttttt tataagtcga gtcattattt tctcaagtat cagatataga
     6481 aatataatta taaaatgatg tgcaaaattg gtatagtttg cttctttaag cccaagagta
     6541 aatctttcac acttctttta caaattcttt caaggttaaa aaagttaata catatgcaaa
     6601 ccaccattaa cgctaagatt tgctcccgtg atatatcgac ttttctcact aatcagaaat
     6661 tcaatagccc aagcaatttc ttgtggctct gccaatcttt ttgcgggtat caaattaata
     6721 atcccctcca gaatatctgg tctaatacct ttcatcagac gagtattaac gtaaccagga
     6781 gaaatactgt ttactgtaat atttttaatc attagttcct gggcaagact tttggtaaaa
     6841 ccatatactc cagcctttga agcagcataa ttggcttggg aaaattgccc tttctgggca
     6901 ttaaccgaag acacattcac tattcggcct gactcctgag ctttcatact ctctactact
     6961 tgtttagtta cattaaacat tccatcaaga ttgacacgta acacttcatc ccattgcctt
     7021 ttggtcattt tggtaaacac agcatctcga gtaattccag cattattaat cagcacatca
     7081 ataccaccaa actcttcaat aattaagcct attacttcag cacattgctc ataatcagtt
     7141 acatccatat gcctgaaatt aatattttta tagccttgtg tcttcaaatc atgaagccat
     7201 gcttcaccct catcatagga aaccaaatcc aaagcaatga catgtttaaa agttgaatcc
     7261 agttgttttg caacagccgt accaatgtca cctgttccac cagtaattaa taccacatta
     7321 ttattcagca tgaatttctc tattagtttt tccctatccc caattgatga tttaaaattg
     7381 gagcttatat tttattcatt gttaacggtg atcgcagcca ctttttcaaa atcccaaggt
     7441 gccttgcgaa cagtaaataa tatgttcaca aaacctcttg agattcttaa tcggtgaatc
     7501 aaactctgac tacatatact gaccaccatt gacgtccaga tttgcccccg taataaatcc
     7561 gctatctggt gatgctaaaa atgcaacggc atctgcaatt tcttttgggt atcccaatcg
     7621 accaacagga atactggata tgattgaatt gagtacatct tctttcaatg cagcgagcat
     7681 aggagtttca atatacccag gcgacactgt gtttaccgta atacctttac ttgctacttc
     7741 taatgcaaga ctcttggtaa aaccaaataa agccgccttg gtggaagcat aattgcattg
     7801 gccaaactgc ccttttcttc cattgattga agatatactg acgatacgtc cataacctct
     7861 ttccaacatc actggaacga cattgcgcgt catattgaat acactggtca agttggcgtc
     7921 taaaacctgt tgccattgtt gaggtgtcat ttttcttaaa ctgcagtctt tagtaatgcc
     7981 tgcgttgtta accaaaacat ctatacggcc ataacgctcc atcaccaggg atgtgatttt
     8041 ttcgcaatca ctatattgag ctatatctcc atatacgata tcaatgtcat aaccaagttg
     8101 cctttgctca tcttgccatt tttttgcttc ttcatgtctt ccatctttat agtagcatgc
     8161 cacaacctgg taactatcag ctaagcgctg actaatagca gaaccaatac cgcctgttcc
     8221 cccagttaca atcgctatca ttttatccat cgacaactcc ttttgttgct aggtaacatt
     8281 acattactac aatctaattt cactt
//
LOCUS       DACVWI010000131         8305 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.131, whole genome shotgun sequence.
ACCESSION   DACVWI010000131 DACVWI010000000
VERSION     DACVWI010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8305
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.131"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            48..1406
                     /gene="dnaA"
                     /locus_tag="JBH85_10750"
     CDS             48..1406
                     /gene="dnaA"
                     /locus_tag="JBH85_10750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HAU0946680.1"
                     /translation="MSTTAWQKCLGLLQDEFSAQQFNTWLRPLQAYMDEQRLILLAPN
                     RFVVDWVRKHFFSRIEELIKQFSGDDIKAISIEVGSKPVEAVDTPAETIVTSSSTAPL
                     KSAPKKAVDYKSSHLNKKFVFDSFVEGNSNQLARAASMQVAERPGDAYNPLFIYGGVG
                     LGKTHLMHAIGNSILKNNPEAKVLYLHSERFVADMVKALQTNSINEFKRFYRSLNALL
                     IDDIQFFAGKDRSQEEFFHTFNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLT
                     VAVEPPELETRVAILISKAEQSNIELPYEVAFFIAKRIRSNVRELEGALRRVIANAHF
                     TGKPITIEFVHEALRDLLALQDKLVTIENIQKTVAEYYKVKVADLLSKRRSRSIARPR
                     QMAMALSKELTNHSLPEIGDHFGGKDHTTVIHACRKVKELIQDDSDFAEDYKNLMRIL
                     SS"
     gene            1420..2523
                     /locus_tag="JBH85_10755"
     CDS             1420..2523
                     /locus_tag="JBH85_10755"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HAU0946681.1"
                     /translation="MFELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLY
                     ITATDLEIEMSAQVACDSKNTSGSITVPAKKFIDIIRSLDENASPSIVFDKALVTIKQ
                     NRSTFKLATLPAENYPSSEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLL
                     LEFDSNIISAVATDGHRMAISRYSCNNIAQTKLLIPKKGVQELLRLLNCINDEQVLLA
                     AGKSHIKLITNQFVFLSKLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAH
                     EKSKAVLLHLQQGQLTLIANNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFSE
                     GQIRLSMSNTESSILIESLVNDNYQYIIMPMKI"
     gene            2520..3581
                     /gene="recF"
                     /locus_tag="JBH85_10760"
     CDS             2520..3581
                     /gene="recF"
                     /locus_tag="JBH85_10760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HAU0946682.1"
                     /translation="MILSEVRIHNFRNIASTSLILNPNFNCITGPNGGGKTSLLEALY
                     MLSCAHSFRSREITPIISYGQNQLNVFAHAYDESTISVQKSITDGTQIKLNNQFCCTT
                     SQLAYALPCQVIYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNA
                     LLKSRATYDHFIPWDQQLSQLANQLDKARNDYFLQWQPKFYQVLSDLTNISCTVEYYK
                     GWDRKNAGQNMEELLQKSFDSDRKKLYTQYGPHQADLIISTEQYRVKHTLSRGQQKII
                     LIALKLAQGQLLDKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYD
                     ILPIDSGLFEVNCGAIKNL"
     gene            3879..6296
                     /gene="gyrB"
                     /locus_tag="JBH85_10765"
     CDS             3879..6296
                     /gene="gyrB"
                     /locus_tag="JBH85_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019232685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HAU0946683.1"
                     /translation="MSVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFE
                     VVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHA
                     GGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETG
                     EANSTGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKKDTFH
                     YEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQ
                     RDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFS
                     SQTKDKLVSSEVKPAVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREM
                     TRRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGK
                     ILNVEKARFDKMLSSQEVATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIR
                     TLLLTFFYRQTRELLERGYIYIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDGAT
                     FYPAKEVPPISAKSLEELVQHFRRVEKIIKRYKRRYPSDILKRVAYMPMLHQEDFNNL
                     PKIENWCRQLHLSLQQVDSKTEQYKVDTQKLTEGNQYTPKITVYQHGLENDIPMQVEF
                     FLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKSLPVENFEQVLNWLMDEAKKGQTIQRY
                     KGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAADEIFTTLMGDNVEPRRDFIETNAL
                     DAENIDI"
     gene            complement(6665..7711)
                     /locus_tag="JBH85_10770"
     CDS             complement(6665..7711)
                     /locus_tag="JBH85_10770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HAU0946684.1"
                     /translation="MNMNTAPKQYGFYMPAEWYPHERCWMAWPCHHETWSKIGLDKAK
                     MAYARVAKAIAQFEPVTLLVNPGDEDSAENLCKGHNIEIISLPINDSWTRDTGATFLI
                     NNERQLAGVDWIHNAWGGNYADCSLDNLIASHLIKYTEAQYFHAPLVMEGGSFHVDGE
                     GTILTSKECLLNSNRNPHLSQQEIEQYLINYLGAERIIWLNMGLIGDETDGHVDEIAT
                     FIAPGKVLCLITKDKEDPNYHRLQENFEILKSSKDARGRTFEVYTVEQPPATYLNGER
                     LTLSYINFYMANQGIVMPAFGYESFDRLAYQLFVQIFPGYQITQIDALDVFSGGGGIH
                     CITQQQPKSHKLVE"
     gene            complement(7708..>8305)
                     /locus_tag="JBH85_10775"
     CDS             complement(7708..>8305)
                     /locus_tag="JBH85_10775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HAU0946685.1"
                     /translation="DEENPSEKALLMRINECMAAKIFCNISFFQSIPDAWAIGQIFPV
                     APISQLNRTLSMHSILQDLTCDSDGTIKQYPGSSCVTTTLMLPSYDINNPYNIGFFLV
                     GAYQEILGNLHNLFGDTNSLDVKLSDDGQFELDDLVSGDTVTNVLNLAHFDTKKLIQS
                     YEKQLIKSELPKEKALSYLNELRSIFSQLTYLDGNIAQ"
BASE COUNT         2696 a         1459 c         1643 g         2507 t
ORIGIN      
        1 gttttaagta ttcttttacc acacttgttt aaattaggag ttattttgtg tcaactactg
       61 cttggcaaaa atgtttaggt ttgttgcaag atgaattttc tgctcagcaa tttaatactt
      121 ggttgcgccc tttacaagct tacatggacg agcagcgttt aatcttatta gcgcctaatc
      181 gtttcgttgt tgattgggtt agaaaacatt ttttttctcg tattgaagag ttgatcaaac
      241 agttctccgg cgatgacatc aaagctattt ctattgaagt aggtagtaag cctgttgaag
      301 ctgttgatac gcctgctgaa acaattgtta cttcatctag tacagcacct ctaaaatccg
      361 ctcctaaaaa agcagttgac tataaaagca gtcacttaaa taaaaaattt gtttttgaca
      421 gctttgtcga aggaaattca aatcaactgg cgagagctgc gtccatgcag gtagctgagc
      481 gccctgggga tgcttataat cccttattta tttatggggg ggtaggctta ggtaaaacac
      541 atctcatgca tgccattggt aatagtattt taaagaataa tcctgaggct aaggtattgt
      601 atttgcattc agaacgtttt gttgcagata tggttaaagc attgcaaaca aattctatta
      661 atgaatttaa acgtttttat cgttctttaa atgctttact tattgatgat attcagtttt
      721 ttgcggggaa agacaggtca caagaggaat tttttcatac ttttaacgct ttactggaag
      781 ggcaacagca aatcattttg accagtgatc gatatcctaa ggaaatagaa gggatggaag
      841 agcgtttaaa atctcgattt ggttggggat tgactgtagc agtggagcct ccagagttag
      901 aaacgcgcgt ggcaatatta attagtaaag ctgagcaatc taatattgaa ttgccttatg
      961 aagtagcctt ttttatagcc aaacgtatac gttcgaatgt cagagaactc gaaggggcct
     1021 tgcgtcgagt tatagccaat gctcacttta ctggtaagcc gataactatt gaatttgtac
     1081 atgaagcatt gcgtgatctt cttgctttac aagataagtt agttactata gaaaatatcc
     1141 aaaaaacggt agctgaatat tataaagtaa aggtcgctga tttactttca aaacgcagaa
     1201 gccggtctat tgcaagacca cggcaaatgg caatggcttt gagtaaagag ttgaccaatc
     1261 atagtttacc tgaaatcggt gatcatttcg gtggtaagga tcatacgaca gtcatacatg
     1321 cttgtcggaa ggttaaagaa ttaatccagg atgatagcga ttttgctgaa gattataaaa
     1381 atttaatgcg aatattatct tcttgatacg gagtctatct tgtttgagct aaccattaaa
     1441 aaagaagatc tgcttactcc attgcttact gtttccggag ccgtagataa gaagcagtct
     1501 ttggctattt tgtcccattt tttattaaaa ctgtcggatg gacttttgta tattacggct
     1561 acagatttgg aaattgaaat gtccgcacag gtggcatgtg attccaagaa tactagtggt
     1621 tctattacag taccagccaa gaaattcatt gatattatca ggtcattaga tgaaaacgct
     1681 tcgccatcta tcgtttttga taaagcttta gtgacgataa aacaaaaccg aagtacattt
     1741 aaactggcaa ctttgcctgc tgagaattat cctagtagtg aagatgaatg taatgatgtc
     1801 gagttaacta tcccgcgttt ggttttgttg cagttattgc aatctactca ttttgctatg
     1861 tctcagcagg atgttcgtat atttttgaat ggattattgc tggagtttga cagtaatatt
     1921 atttcagcgg ttgctactga tgggcacaga atggctatat cgcgatattc ctgtaataat
     1981 attgctcaaa caaaattgct tatacccaaa aaaggggtgc aagaattatt aagattattg
     2041 aattgtatta atgacgaaca agttttgttg gcagcgggaa aatctcatat taagttgatt
     2101 accaatcaat ttgtattttt gtctaaatta attgaagcac gctttccacc ttacactaaa
     2161 gctataccaa gagagcagga taaatgtatt gttattgatt gcgcttcgct caagcgtgca
     2221 ttatctcgta ttgtcatttt agctcatgaa aagtcaaagg ctgtcttgtt gcatttacaa
     2281 caaggtcagt taactttaat tgccaataat aatgagcaag aagaggcaat tgaaacattg
     2341 agtgccgaaa cacaaggtga tgaactcaaa atcggactta atgcaaccta tttgctggat
     2401 gttttaactc atttttctga aggtcaaatc aggttatcaa tgtctaatac tgaaagcagt
     2461 attttaattg agtcattagt caacgataat tatcaataca ttattatgcc tatgaaaata
     2521 tgattttatc tgaagttaga attcataatt ttcggaatat cgcttcgact agtttaatcc
     2581 taaatcccaa ttttaattgt attacaggac ctaatggcgg tggaaaaacc tcgttactag
     2641 aggctcttta tatgttgagc tgcgcccatt cttttcggtc tcgtgagata actccaatta
     2701 tttcgtatgg tcaaaaccaa cttaatgttt ttgcccatgc ttacgacgaa agcactatta
     2761 gtgttcagaa atctataaca gatggcacac aaattaaatt gaataaccag ttttgctgta
     2821 ctacaagtca actagcctat gcgcttcctt gccaggttat ttactcagat atttttcaaa
     2881 ttattgatgc cggcccctcg gtaaggagaa gcttgcttga ttgggggttg tttcacgtga
     2941 aacatgatta tttgaaaatt tggaaggatt acaagcgcat acttagccaa cgaaatgcct
     3001 tattaaaatc cagagctact tatgatcatt ttattccttg ggaccaacag ctaagtcaat
     3061 tggcaaatca actggataaa gctagaaatg actatttttt gcaatggcaa cctaaattct
     3121 accaagtttt aagcgatcta accaatatat cttgcacagt tgagtattac aaagggtggg
     3181 atagaaaaaa tgcaggacag aacatggagg aactgcttca gaaatcattt gatagtgata
     3241 gaaaaaaact atatacgcaa tatggacccc atcaagctga tttgataatt agcactgaac
     3301 aatacagagt aaagcataca ctctctcgtg gacaacaaaa aataattcta atcgcgctta
     3361 aactggctca aggtcagcta ttagataaag attgcttata tcttattgat gatttggctg
     3421 ctgagttaga tgactatcac cagcgaaatt taattaagta tctgacacag caaaaagggc
     3481 agtttgttat aacgaattta attaacaaca ataattacga tatcctgcca attgactcag
     3541 gtttgtttga agtaaactgt ggcgcaatta aaaatttata atatagaatg tttcacgtgg
     3601 aacacaaatt aatggaatta aaagttctca ttattaaaca atatcacctt aatgcaaatg
     3661 caatataaaa ttctaaaggt aaacatatga tattctacaa atggctcatc aaatgtcatg
     3721 gtatgaaaat caaataaaca aaatgatatt caaaaaaaat caacgtcaat aattcaaaat
     3781 gcacaagcgt aaagttctct acttaagata taaactagat acaaaagatg atataataga
     3841 ctcattgtta atagcataat acggcaagag ggcagctgat gagcgtagac gccagttatg
     3901 attcaaataa tattaaagtc ctaaaaggtt tagacgcagt aagaaaaaga ccgggcatgt
     3961 acattgggga tacagatgat ggaaccggtt tgcatcatat ggtttttgag gttgtagata
     4021 attcaataga tgaatccctg gcaggttatt gcaaggaaat ttttgttacc attcatagcg
     4081 atgaatcaat taccgttaag gatgatggtc gtggtattcc tgtcgatatt cacaaggaag
     4141 aaggaaaatc agctgctgaa gtcattatga cagtcctgca tgccggaggt aaatttgatg
     4201 ataactctta caaggtatca ggcggtctac atggagtagg ggtatctgtg gtgaatgccc
     4261 tttcagaaga gttgcattta ctagtgcgta gacatggaaa agtgtatgag caacactaca
     4321 ggcatggtgt tcctgaatct cctattgctg aaactggaga agccaactct actggcacac
     4381 aaatatggtt taaaccaagc gctgaaacct tttctaatat tgagttccat tacgacattc
     4441 tagctaaaag attacgtgaa ttgtcatacc tgaattcagg cgtttgtatt cacttatttg
     4501 atgaaagaac acagaaaaaa gacacgtttc actacgaagg cggcatcaaa gcctttgttg
     4561 agcacttaaa taaaaataaa acaccagtcc accccgttgt tttctcaatg acatcggaaa
     4621 aagacggtat cgtcattgaa ctggccatgc aatggaatga tggctatcaa gaaaccatat
     4681 tttgctttac taacaacatc ccgcaaaggg atggtggaac acatatggcc ggctttagag
     4741 cagcattaac tcgcacttta aataattaca tagaaaacga agggtatgcc aaaaaggcaa
     4801 aagtatctcc aacaggtgat gatgctcgcg aaggtttaac agctgttctt tcagtaaaag
     4861 tccctgatcc caagttttca tcgcaaacga aagataaact ggtttcatct gaagtaaaac
     4921 cagcagtaga atcctgtgtt gctgaaaaat ttaacgattt tcttttagaa aatcccactg
     4981 cagcaaaatc catcgtagca aaaattattg atgcagcaag agctagagag gcagcgcggc
     5041 gtgctcgtga aatgactcga cgtaaagggg ctttggatat tgccggttta ccaggtaaat
     5101 tagctgattg ccaagaaaaa gacccatcgc tttccgagtt gtatttagtt gagggtgact
     5161 ctgctggagg ctcagcaaaa caagcgcgag atagaaaatt ccaggctatt ttacctctta
     5221 aaggcaaaat tcttaatgtt gaaaaagcac ggtttgacaa gatgctttct tctcaagaag
     5281 tagccacttt gattactgca ttaggctgtg gaattggtcc cgaggaatat gatccagata
     5341 aagtacgtta tcatagaatc atcattatga cagatgctga tgtggatggg tcccacataa
     5401 gaactttact tcttaccttt ttctatagac aaaccagaga gctattagag cgaggatata
     5461 tttatattgc acaaccacct ttgtataaag taaagcgtgg aaagcaggag caatatgtta
     5521 aagatgatga agcgttattt gattatctaa ctcagtgcgc gttggatggg gcgacatttt
     5581 atcccgccaa agaggttccg cccatatctg ccaaatcgct ggaagaattg gttcaacatt
     5641 tcagacgtgt tgagaagatt ataaagcggt acaagagaag ataccccagc gatatactaa
     5701 aaagagtagc ttatatgcca atgctgcacc aagaagattt taacaatctg ccaaaaattg
     5761 aaaactggtg cagacaatta cacctaagct tacaacaagt agacagtaaa acagaacaat
     5821 acaaagtaga tacccaaaaa cttacagaag gtaatcaata caccccaaaa attactgtgt
     5881 accagcatgg cttggaaaat gatattccga tgcaagttga atttttcctg tctaaagatt
     5941 acaaagaaat ggttgattta ggacataaat tgtcgaattt aatagaggaa ggcgcctata
     6001 ttcaacgtgg agataaatcc ttgcctgtgg aaaattttga gcaagtactt aattggctaa
     6061 tggatgaagc aaaaaaagga caaacaattc agcgctataa aggtcttgga gaaatgaacc
     6121 ctgagcagtt atgggaaaca accatggatc ccgaggttag acgaatgttg caagtgagca
     6181 ttgaagatgc cgtagctgcc gatgaaatct ttaccacctt aatgggcgac aatgtagaac
     6241 caagaagaga ttttattgaa acgaatgctt tagacgctga aaacattgat atttaaacaa
     6301 atagtattgt tgaactggag tgatgtttgc ctcgctcgtg gcaaacgcct ctctagctta
     6361 tagctggtcc actcaatgac ttaacttatt ttcctactat gatgatgtgt tcaaaaaaag
     6421 ccttttgatt gattgcttaa aagaaaaaaa tcaaagaggt atactggtaa attggagaat
     6481 aagtgctgcg tccttgcagc gaagtacatc ctttgtactg gtcccttagt tgacttcctg
     6541 tcagacatat ccatgtcatc cctgtatgtt tttagtataa ccaattggca gtatatgtca
     6601 tcgagtataa tgagcagtaa tatgtaagaa atttctcaat taagaagtgg cattgtcttc
     6661 gtcattactc cactaattta tgagatttag gttgttgttg tgtaatacaa tggataccac
     6721 caccaccaga aaatacatcg agtgcatcaa tttgtgtaat ttgatatcct ggaaaaattt
     6781 gtacgaataa ctgataggct aatctgtcaa atgattcata tccaaaagca ggcatcacaa
     6841 taccttgatt agccatgtaa aaattgatgt acgagagagt gagcctttct ccgttaaggt
     6901 aagttgcagg tggttgctca acagtataga cctcaaatgt tcgtcctctg gcatccttag
     6961 atgatttgag aatttcaaag ttttcctgca agcgatggta gttaggatct tccttatcct
     7021 tggtaataag gcataacacc tttccaggag caataaatgt tgctatttcg tcaacatgac
     7081 catctgtttc atcacctatc aatcccatgt tcagccaaat aatacgctca gcacccagat
     7141 aattaataag gtactgttcg atttcctgtt gagataaatg tggatttcga ttggaattta
     7201 acaaacactc tttgcttgtc aaaatagtcc cctcaccatc tacatgaaag gaaccacctt
     7261 ccatgaccaa tggcgcatga aagtattgag cttcagtgta ttttattaga tgagaagcta
     7321 ttaaattatc caaagaacag tcagcgtaat ttccacccca agcattatgt atccagtcaa
     7381 ctccggcaag ctgcctttca ttattaatta aaaaggtagc ccccgtatcg cgggtccacg
     7441 aatcgttaat tggcaaagag ataatttcaa tattatggcc tttgcataaa ttctctgcgg
     7501 aatcttcatc tcctgggttt actaataaag taacgggctc aaattgagct atagcttttg
     7561 caacacgtgc ataggccatt ttagccttgt ctagccctat tttggaccag gtttcatggt
     7621 gacagggcca tgccatccag catcgttcat gaggatacca ttcagcaggc atataaaaac
     7681 catattgttt gggtgctgta ttcatattca ctgtgctata tttccatcaa ggtaagttaa
     7741 ttgagaaaaa atacttctta attcgtttaa gtaagagagt gccttttcct taggaagttc
     7801 agatttaatt aattgctttt cataagattg aattaacttt ttggtatcaa aatgggctaa
     7861 attcaacacg tttgttacgg tgtcgccgct gactaaatca tccagctcaa attgtccatc
     7921 atcagaaagc tttacatcta gagaattggt atctccaaac aagttatgca gattacccaa
     7981 tatttcctga taggcaccaa ccaggaaaaa tccgatgtta taagggttat tgatatcgta
     8041 tgaagggagc atcaatgtgg ttgtaacgca ggaacttcca gggtattgct taattgtacc
     8101 atctgaatcg caggttaaat cctgtaggat actatgcata ctaagtgttc tattaagttg
     8161 agatataggg gctaccggga aaatctgacc aatagcccaa gcatcaggaa tagattggaa
     8221 aaaagagata ttacaaaata tcttggcagc catgcattca ttgattctca ttagcaaagc
     8281 tttttcactt ggattttctt catcc
//
LOCUS       DACVWI010000132         8295 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.132, whole genome shotgun sequence.
ACCESSION   DACVWI010000132 DACVWI010000000
VERSION     DACVWI010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8295
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.132"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            63..587
                     /locus_tag="JBH85_10780"
     CDS             63..587
                     /locus_tag="JBH85_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946686.1"
                     /translation="MMKRKFTMPKKFTRKIPLISREECFALLPGYSINAMNLLKRGNH
                     TPYYEEIEYLSKIFVALVTHYAEPIESIINCMEKAMYGAYKEELDKIEHEIQRLFKIR
                     KNTPIHSLFGEREIEKLTIQISELEKRKSVPVKEIIQGVIYDTLDKASQTLVDRIPAN
                     YKLQEYESRDNPFQ"
     gene            849..1328
                     /locus_tag="JBH85_10785"
     CDS             849..1328
                     /locus_tag="JBH85_10785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HAU0946687.1"
                     /translation="MTLCPCGSQNKYEQCCGIYLESKKTPETPEQLMRSRYTAYSLAK
                     IDYIKQTMQGKPLIAFNESEAKQWAQNVSWLGLKIIQSYMERPDKGFVEFIATFLDGN
                     QLKSIHELSEFQKDNSVWFYVDGEAKQLPNKQDKQKIGRNSPCPCGSGKKFKNCHDK"
     gene            1348..3153
                     /locus_tag="JBH85_10790"
     CDS             1348..3153
                     /locus_tag="JBH85_10790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HAU0946688.1"
                     /translation="MNGHLLLNVFIFLAAASIMVPLASRFRLGSVIGYLTVGMLIGPF
                     GLKLIGNAEQIMHFAEFGVVMMLFLIGLELEPIMLWKLRKLIVGLGGLQVLLTTIALS
                     SAAVMMGYNLRASVAVSMALALSSTALVLQMLQEKNLLKTAEGETSFAVLLFQDIAVI
                     PILVILPLLGNHHGINVAINPHTAASIAQLPKWLHAIVVAGIIGSIVLAGHYLSRYLF
                     LIIAKTNIREVFTAFSLSLVVGITLLMETIGVSPALGAFIAGMVLANSQYKRTVEADI
                     QPFKGLLLGLFFISVGMGINFNLLFSQMAVIIPIVLGLITIKALILFTLGKIFQLTKI
                     QALGFALGLSQGGEFAFVLFQYSSTLKVISPEINSFFTLVVALSMLATPFLMLLYHRF
                     MIPKLISKLPEREYDSIHEKNNIIIAGYGRFGQIIGRFLSGENIKVTVLEKNPEQVEL
                     LRKFGYTGYFGDANRLDLLKSAGAAHAQLLIVTVGNPDTNLEIVKLAKEEFPQLKIFA
                     RARNRRHAYELHKAGVHYFKRELFDSSLTMTKEILKFLGYKPEEIEKKANAFQKHDEE
                     TLIKSFDFFEEEANLINFSRQAKGELERILQNNNP"
     gene            3195..4109
                     /locus_tag="JBH85_10795"
     CDS             3195..4109
                     /locus_tag="JBH85_10795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HAU0946689.1"
                     /translation="MAFIMIKQLQQALSDILLGKEEVIRLGITCLLANGHLLLEDNPG
                     MGKTTFSHALAQLTGMQYRRIQFTSDLLPSDLLGVSIYDHQRNVFQFHKGPIFSQLIL
                     ADEINRATPKTQSALLEAMEERQVTTDIGTEALPQPFFVIATQNPSCHTGTYPLPESQ
                     LDRFLMRLVIGYPPPDAERMLLKSSNLNAQLKELIPIINPQQLQILQRESQKVLVSEL
                     VLDYVQSLLDASRNQGWFNHGLSPRAGMGLVHAAQAFARTDDRDFVRPDDIQAVMPAV
                     VNHRLIIKKSQTQLSAAELLMSEIEVPV"
     gene            4133..5056
                     /locus_tag="JBH85_10800"
     CDS             4133..5056
                     /locus_tag="JBH85_10800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946690.1"
                     /translation="MAYWEEWIAKRISKTNPQILGSQNIYIIPSGFGWAYGVVVLSLF
                     SGAINYQVSTVFLMSFILAIVGFISAWEAHANLKGLSIKLVSVEDTYEGTPAQVSLLI
                     QSNNRMHFGLDFRLNNQSVTRLEKIPPQGLRFIFPLATTRRGCYTLPKITISSFFPFG
                     LFQVWGYANFDSNYYVYPQPVNPGFWPIPLYHQNKRKTDSHGDNEYYDLKQVDNPWIQ
                     PNLIAWKIAAKGQGWYLKTMDRAEEMYWLFRLNDLPIETLEEKLKHLSYWLVTAESQG
                     QFYKLELGNDPDQFSHGEEHLRYCLRQLAVY"
     gene            5056..7044
                     /locus_tag="JBH85_10805"
     CDS             5056..7044
                     /locus_tag="JBH85_10805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3488 domain-containing protein"
                     /protein_id="HAU0946691.1"
                     /translation="MDFFSKQHTFLITTRYALLVMLICYFPHFLTCPLWLTALILTTL
                     CYKLISDYFAYPLLDGKIRFIVVIICLFLLKFQYGSIISSGFFIGFLLAFIGLKTIEI
                     HNDRDIRILILCNFYLIFAALIVVQELWIIPYLLIAILANFTLMLKLTAPQASLRQIN
                     GHSMKLLLIATPLTVFLFYFFPRIANPLWQVPSLEKNHTGFSEWMEPGSVANLLNDDR
                     TALRIIFKRKAILNGYWRGLTLSRYNGISWNPAWHDSSTFSSLKELTTSDDGDYEVIM
                     EPHQKKWLFYLGYPNAAYPQLLFSPNFGLVSHNKDMIAQRFAYALRISSSPHSSLTQK
                     DWKLNTQLPKYSNPRITFWAKKQFAEVNYDPQAFIQFIQNYIKKESFWYTLTPPKLDN
                     ENDQMDYFWFDSRKGFCEHYASAVTVVLRAVGIPARVIVGYQGGEWNPLAKYLTIKQY
                     DAHAWVEYWQKDFGWKQLDPTAFISTSRIDPSVLAMRAARTDQQLIIDPLNLNWIQKI
                     KLYMESTRFFIERWLLFYNQDAQYKLLEQIGLKHWNAAMLLQIAILSLVLFIILLGAC
                     YQWWQKRTLDPLLREYHLLQKEFCRFNIATQPPATLNKQCKILINKIPNLEETITTFL
                     SHYEKLRLRHRITKTKENKKQTLLLFKNLRRILKQVKI"
     gene            7126..>8295
                     /locus_tag="JBH85_10810"
     CDS             7126..>8295
                     /locus_tag="JBH85_10810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HAU0946692.1"
                     /translation="MVHFQKMTVQTFLKDYWQKKPLIIRQALPDFTNPLTPDELAGLA
                     LEEEIESRLVYETPDQSPQWNLKRGPFKESDLIGLPKTHWTLLVQGVDRIVPDVYELL
                     EHFNFIPQWRVDDVMISYATLHGSVGPHYDNYDVFLYQAKGRRLWSLTSKKCHTNNFI
                     KGLELRIMKEFEVEEQFILEEGDMLYLPPHIGHYGIAQSEECMTYSFGYRSYQGQELW
                     DSLGDYLSEHGSFKSLYQDPDWSTLKNTSEITPKAWDNARQLLRQVLENDQLMQSWFG
                     CFATSLDQSAEQYLPPPLEEDELLGLDEFIKELANYQEIVRDASCRFAYIMSDQESQC
                     HFYVNGKEWDSRGVSTNLLSFVANNRFLSLKELKPYLNHKANQLFLYELWKLQWLQ"
BASE COUNT         2606 a         1612 c         1533 g         2544 t
ORIGIN      
        1 gcccaatata taaccatatt gatcaatata aattctttgg atgctatact tataatgtag
       61 acctgatgaa aaggaagttc actatgccta agaaatttac tcgaaaaata ccacttatct
      121 ccagggaaga gtgtttcgct ttattacctg ggtacagcat caatgcaatg aatcttctga
      181 aacgaggaaa tcacacaccc tattatgaag aaattgaata cttatcaaaa atttttgttg
      241 ccctggtcac tcattatgca gaaccaatag aatcaatcat caattgcatg gaaaaagcaa
      301 tgtatggtgc ttataaagag gaattagata aaattgagca cgaaattcaa cgcctgttta
      361 agataagaaa aaatactcca attcattctc tatttggcga aagagaaatc gaaaaattga
      421 ctatacagat ttcagaattg gaaaaacgca aatcagtacc tgtaaaggaa attatccagg
      481 gagttatcta cgatacctta gataaggcaa gccaaactct ggtggacagg ataccggcaa
      541 actataaact gcaagaatat gagagccgag acaatccttt tcaataagat tcaggtacat
      601 tgttaaatga aatacaacca atcacttata acctaattta ctccgatagc acttggtcat
      661 ttttttatta cccattttaa aatcgctgtg tggattaata atgaatcaca ctttgtccct
      721 gtttttataa aaatccaatg caacaaaact gtttagaaat aatggaatgc catatagaat
      781 ataatccggg attcgttaat ataacggatt gtaaatttac ccataaacca gtttttacag
      841 gtaactaaat gactctttgc ccctgtggtt cacaaaataa atatgagcaa tgttgcggga
      901 tttatctgga aagcaagaaa actcctgaaa caccagaaca attaatgcgt tcgagatata
      961 ctgcgtattc tcttgcaaaa atcgattata ttaaacagac catgcaaggc aaaccactaa
     1021 ttgctttcaa cgaatcagaa gcaaagcaat gggctcaaaa tgtttcctgg ctgggtttga
     1081 aaatcattca aagctacatg gagaggccag ataaaggatt tgttgaattt atagcaacct
     1141 ttcttgatgg aaatcaattg aaaagtattc atgaattaag tgagtttcaa aaggataatt
     1201 ccgtttggtt ttatgtggat ggggaggcta aacagttacc aaacaaacaa gacaagcaaa
     1261 agataggccg caatagccca tgtccctgtg gaagcggtaa aaaatttaaa aactgtcatg
     1321 ataaatgaat taaactcaag gtagcagatg aacggtcact tactcctcaa tgttttcatt
     1381 ttccttgctg ctgcaagcat catggttcca ctggcaagcc gatttagact tggttctgtg
     1441 attggttatc ttaccgttgg gatgctcatt ggaccttttg gacttaagct aataggcaat
     1501 gccgaacaaa ttatgcattt tgcagaattt ggagtagtca tgatgttatt cttgattggt
     1561 ttggaattag aaccaatcat gctctggaag ctgagaaaat taatagttgg cttagggggc
     1621 ttgcaagtgt tgttaacaac aatcgctctg tcttcggcag ctgttatgat gggatacaat
     1681 ttgcgagcca gtgtcgcggt cagtatggca cttgccctat cttcaactgc tttagtcttg
     1741 caaatgctcc aggagaaaaa tcttttgaaa accgcggagg gtgaaacttc ttttgctgtt
     1801 ctcttattcc aggatattgc ggtcattcca atcttggtga ttttgccttt attaggcaat
     1861 catcatggaa ttaatgtggc tattaaccct catacggctg cctctattgc tcaattaccc
     1921 aagtggcttc acgctattgt cgttgccggc attatcggta gcattgtttt ggcgggacac
     1981 tacttatcca gatacttgtt cctaatcatt gcaaaaacca atatccgtga agtatttaca
     2041 gcattttcct tatccctggt cgttggaatt accttgttaa tggaaacaat tggggtgtct
     2101 ccggctttgg gagcttttat cgcaggtatg gttttagcta actctcaata taaacggact
     2161 gtagaagctg atatccaacc tttcaaagga ctgcttcttg gattattttt catctcagtc
     2221 ggaatgggta tcaacttcaa tctactcttc agtcaaatgg ctgtaatcat ccctattgta
     2281 ctcggtttga ttaccattaa ggcattgatt ctctttacgc tcggcaagat atttcaactc
     2341 actaaaatac aggcgctcgg attcgccctt ggtttatcac agggtggaga atttgccttt
     2401 gttctttttc aatactccag cacattaaaa gtaatcagcc cggaaataaa cagttttttt
     2461 actctggtag tcgccctgtc catgttggcc acaccctttt taatgctttt gtaccatcgt
     2521 tttatgatac cgaaattaat aagcaaatta ccagaacgtg aatacgactc tattcatgaa
     2581 aaaaataaca ttattatagc tggttacggt cgatttggtc agataattgg tcgatttctt
     2641 agtggtgaaa acatcaaggt aaccgttttg gaaaaaaatc cggagcaagt cgaattatta
     2701 agaaaatttg gctacaccgg atattttggt gatgcgaatc gtctggacct gctaaaaagc
     2761 gcaggagcag cgcatgctca attgctcata gtcacagtcg ggaatcccga caccaatttg
     2821 gaaattgtga aattagctaa agaagagttt cctcaattga aaatttttgc ccgagcaaga
     2881 aatagacgac acgcctatga gttacataaa gcaggagttc attatttcaa aagagagtta
     2941 tttgactctt cgttaaccat gaccaaggaa attttaaaat ttcttggtta taaacctgaa
     3001 gaaattgaga aaaaagccaa tgctttccaa aaacacgatg aagaaacatt aattaaatct
     3061 tttgattttt ttgaggaaga agccaatctc atcaatttct cacgtcaggc aaaaggagaa
     3121 ttagagcgta ttttgcaaaa taataatcca taatcaaatc ataaaggtct atacttccat
     3181 ataatcatct tgaaatggct ttcattatga taaaacaatt acaacaggca ttaagtgata
     3241 ttcttttagg aaaagaagaa gtcatcagat tgggtattac ctgtttatta gccaatgggc
     3301 acctgcttct tgaagacaac ccaggtatgg ggaaaacaac atttagtcat gcgctggctc
     3361 aactgactgg tatgcaatac aggcgaatac aatttaccag cgaccttttg ccaagtgatc
     3421 ttttgggagt atctatttat gatcatcaac gcaatgtctt tcaatttcat aagggtccta
     3481 tattctctca attaattctc gctgacgaaa taaacagggc cacacctaag actcaaagcg
     3541 ccttattaga ggcaatggaa gagaggcaag ttactactga tataggaaca gaagctctcc
     3601 ctcaaccatt ttttgttatt gctactcaaa atccgtcttg ccatacggga acttatcctt
     3661 tgcctgaatc gcaattggat cgatttctga tgcgcctggt cattggctac ccaccgccag
     3721 atgcggaacg tatgctttta aaatcatcaa acttgaatgc tcaattaaag gaactaatcc
     3781 ctatcattaa tcctcagcaa ttacaaattt tacaaagaga gagtcaaaaa gttctagtct
     3841 ctgaattggt tcttgattat gttcaatctc tactggacgc cagtagaaac cagggatggt
     3901 ttaatcatgg attaagccca agagcaggaa tgggattagt gcacgccgct caagcctttg
     3961 ccagaactga tgatagagat tttgttcgac ctgatgatat tcaggcagtc atgccagctg
     4021 ttgtgaatca ccgcttaatc ataaaaaaat cacaaactca actctctgct gccgaattat
     4081 taatgagtga aattgaggtt cccgtgtgat aaggcaaatc aaaacaaaag ttatggctta
     4141 ttgggaagaa tggattgcca aacgaatctc taaaaccaat ccccaaattc ttggttcaca
     4201 aaatatttat attataccct ctggatttgg atgggcctat ggtgtggttg tactgtccct
     4261 gttttctggc gcaatcaact accaagttag cactgttttt ttaatgagtt tcattttagc
     4321 aattgtaggt tttataagtg cttgggaagc tcatgccaat cttaaaggat tatctattaa
     4381 attggtatcg gttgaggata cctatgaagg aacgccagcc caggttagct tattgattca
     4441 atcaaataat agaatgcatt ttggactaga ttttcgcctt aataatcaat cagtcactcg
     4501 attagaaaaa attcctccgc aaggtttgcg atttattttt cctctggcaa caactcgaag
     4561 aggatgttat accctaccca aaatcaccat ttccagtttt tttccttttg gcttgtttca
     4621 ggtatgggga tacgccaatt ttgatagcaa ttattatgtc tatcctcaac ctgtcaatcc
     4681 tggcttttgg cccatacccc tttatcatca gaataaaagg aaaacagact ctcatggaga
     4741 taatgaatac tatgacttaa agcaggtaga caatccctgg attcaaccta atcttattgc
     4801 atggaaaatt gcagcaaaag gacaaggttg gtatttgaaa acgatggacc gcgctgaaga
     4861 aatgtattgg ctttttagat taaatgattt acctattgaa acactcgaag aaaaattaaa
     4921 acacttgagc tattggttgg ttactgccga atcccaaggc cagttttaca agctcgagtt
     4981 gggaaacgat ccggatcaat tttcccatgg ggaagaacat cttcgatatt gcttacgtca
     5041 attggcggtg tattgatgga ctttttttcc aaacaacata cttttctgat aacaacccga
     5101 tacgctcttt tggtcatgtt gatatgctac tttccccatt ttttaacatg ccctttgtgg
     5161 cttactgccc tcatcttgac aacgctatgt tacaagttaa tatccgatta ctttgcctat
     5221 ccacttcttg acggcaagat acgctttatt gtggttatca tctgtctttt tctattaaaa
     5281 tttcaatacg gcagcatcat ctccagtggt ttttttatcg gttttttact ggcatttatt
     5341 ggactaaaaa ctattgaaat tcataatgac agagatataa gaatactaat actgtgcaat
     5401 ttttatctta tctttgccgc attaattgtg gtgcaggaac tatggatcat accttattta
     5461 ttaatagcaa ttctggctaa tttcactctg atgttaaaat taactgctcc tcaagcctca
     5521 ctaagacaaa ttaacggcca tagtatgaaa ctattactta ttgcaacacc attaactgtc
     5581 tttcttttct actttttccc ccgcatagcc aatccccttt ggcaagtacc ttcccttgag
     5641 aaaaatcaca ctggatttag cgaatggatg gaaccagggt cggttgcaaa tcttctaaat
     5701 gatgacagga ctgctttacg aattatattt aaaagaaaag ccattctaaa tggctattgg
     5761 cgaggattaa ctttaagtag atacaatggg ataagctgga atcctgcctg gcatgactca
     5821 tcaaccttct cttcattaaa ggaattaact acttctgatg acggggatta tgaggtcatt
     5881 atggagcccc accaaaaaaa gtggttgttt tatcttggtt accccaatgc ggcttaccct
     5941 caactcttat tttctccaaa ttttggtttg gttagtcata ataaagacat gattgcccaa
     6001 cgttttgcct atgctttgcg aattagctct tcccctcact cctcattgac gcagaaagat
     6061 tggaaactca atactcaatt acctaaatat tcaaatccca gaattacgtt ctgggcaaaa
     6121 aaacaatttg ccgaagtaaa ttatgacccc caagccttta ttcaattcat ccagaattac
     6181 ataaaaaagg aatccttctg gtatacccta actcctccaa aactggataa tgaaaatgac
     6241 caaatggatt atttctggtt tgattccaga aaaggatttt gtgaacatta tgcaagcgca
     6301 gttactgttg tattacgcgc tgttggtatc cctgcccggg ttattgttgg ctatcaagga
     6361 ggtgaatgga atccactggc aaaatattta actataaaac aatatgatgc acatgcctgg
     6421 gtagagtatt ggcaaaaaga tttcggctgg aagcaactgg atcccactgc atttatttcc
     6481 acctcgcgta tcgatccttc tgttcttgcc atgcgagcgg cacgcaccga tcaacagtta
     6541 ataattgatc ccttaaactt aaactggatt cagaaaatca aattatatat ggagtcaacc
     6601 cgttttttta tcgagcgttg gctgttattt tacaatcagg atgctcagta taaattatta
     6661 gaacaaatcg gattaaaaca ttggaatgcc gccatgctat tgcaaattgc catattgtct
     6721 ctggttttat ttatcattct cttgggcgcc tgttatcaat ggtggcaaaa aaggacatta
     6781 gatcccttat tgcgtgaata ccatctttta caaaaagaat tttgccgctt caatattgca
     6841 actcaaccac ccgccacact gaataaacag tgtaaaattt taatcaataa aattcccaat
     6901 ctggaagaaa ccatcactac ctttctttct cactatgaaa aactgcgttt acgacaccgc
     6961 attaccaaaa ctaaagaaaa taaaaaacaa acgcttttgt tgtttaaaaa cctgagacga
     7021 atattaaaac aagtaaaaat ctaaatttga cgggatttat cggttgcatt cttgagtctc
     7081 aaagtgctta aatagataac atttatcaaa ctatgatttt taataatggt tcactttcaa
     7141 aaaatgactg tccaaacctt tttaaaagac tattggcaaa aaaaaccatt gatcattcgt
     7201 caggctttac ctgattttac taatccactc acaccggatg aattggcagg acttgctctt
     7261 gaggaagaaa tagaaagccg cctggtctat gaaacgcccg atcagtcccc gcagtggaat
     7321 ttaaaaagag gcccgttcaa ggaatctgat ttgataggct tgcctaaaac tcactggact
     7381 ctattagtac aaggagtaga ccgtattgtt ccagatgtct atgagttact tgagcatttc
     7441 aattttatcc ctcaatggcg agttgatgac gtgatgatta gctatgccac tctacatgga
     7501 agtgtgggcc cacattacga taattatgat gttttcttgt atcaggctaa aggtcggcga
     7561 ctatggtcat taacctcaaa aaaatgccac accaacaatt ttataaaagg tcttgaacta
     7621 cgaatcatga aagaatttga ggtagaagag caatttatcc tggaagaagg cgacatgctc
     7681 tatttacccc cccatatagg acattatggc atcgctcaat ctgaagaatg tatgacttac
     7741 tcttttggtt atagaagtta ccagggacaa gagttatggg atagtctggg tgattatttg
     7801 tctgaacatg gctcgttcaa atccctgtat caggatccgg attggtccac tcttaaaaac
     7861 acatcggaaa taacgcccaa agcatgggac aatgcaagac aattgctaag acaagtcctg
     7921 gaaaatgatc agctcatgca atcctggttc ggttgttttg ctacaagcct tgatcaatca
     7981 gcagaacaat atttaccccc tcctttagaa gaagatgaat tactcggttt ggacgaattt
     8041 attaaagaat tggctaatta tcaggaaata gttagagatg cctcatgtcg ttttgcttat
     8101 atcatgtctg accaagaatc ccagtgccat ttttatgtca atgggaaaga atgggacagc
     8161 cgtggggttt caacaaactt actcagtttt gttgccaata atcgattcct gtctctaaaa
     8221 gagttaaaac cttatttaaa ccataaggct aatcaactct tcctctatga attatggaaa
     8281 ttacaatggt tacaa
//
LOCUS       DACVWI010000133         8235 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.133, whole genome shotgun sequence.
ACCESSION   DACVWI010000133 DACVWI010000000
VERSION     DACVWI010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8235
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.133"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..421
                     /locus_tag="JBH85_10815"
     CDS             <1..421
                     /locus_tag="JBH85_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HAU0946693.1"
                     /translation="VNRTFKNSETVLDIAVFNRDILIAGHVPTQELYDELQLRLSKVK
                     GYRRLFNRVIINKMPSNSIQDSWITTKIRSQIFADSSIDPNAFKVVTSDRVVYLMGDV
                     QTEQAEKVIKIARYTGGVQKVIKLMRYYTYQTSTNMA"
     gene            607..750
                     /locus_tag="JBH85_10820"
     CDS             607..750
                     /locus_tag="JBH85_10820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946694.1"
                     /translation="MDEICNVVDMKGDFYYACVKAHRYNDCSFFLAAWLLYAEFSLTF
                     FNP"
     gene            890..1285
                     /locus_tag="JBH85_10825"
     CDS             890..1285
                     /locus_tag="JBH85_10825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HAU0946695.1"
                     /translation="MNKQLNKRGITRLWLAQLGVTIILAGLCAILFGVNAASSALLGG
                     LVCIIPNAYFAIKLFKHQGARAARQIVNSFYKGEALKIILSMFLFALVFLLCRITPAA
                     FFASYILVLMTHWFAPWIIVNKQNRPKSD"
     gene            1236..2114
                     /gene="atpB"
                     /locus_tag="JBH85_10830"
     CDS             1236..2114
                     /gene="atpB"
                     /locus_tag="JBH85_10830"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HAU0946696.1"
                     /translation="MPHGLLSINRIGQKVTEMVSSTNYIKHHLTYLTYNVNDMTFGSS
                     GGFWTLNLDTIFFSIALGLIALAIMYLAARKVTTGVPGKLQNFAELMLEFADNQVKDC
                     FHGKNNLIGPLALTIFMWVFLMNFMDIVPVDILPVLAQLVGIHYLKVVPTNDLNLTFG
                     LSLSVFFLIVFYSLKIKGVKGFVKELTLQPFNHPLFIPFNLLLELVGLIAKPISLALR
                     LFGNLYAGELIFILIALLTLNATTSSLISTMTLGTAQFILALAWSIFHILVITLQAFI
                     FMVLTIVYLSLAHEDH"
     gene            2155..2430
                     /gene="atpE"
                     /locus_tag="JBH85_10835"
     CDS             2155..2430
                     /gene="atpE"
                     /locus_tag="JBH85_10835"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HAU0946697.1"
                     /translation="MQAAELIAQVQSMTVIAVALLIGLGALGTAIGFGLLGGKFLEGS
                     ARQPEMVPMLQVKMFIVAGLLDAVTMIGVGIALFFTFANPFLSSLGS"
     gene            2482..2952
                     /locus_tag="JBH85_10840"
     CDS             2482..2952
                     /locus_tag="JBH85_10840"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HAU0946698.1"
                     /translation="MDINLTLIVQMLVFAAFVLFTMKLVWPPLAKALEERQDKIADGL
                     AAAERGRKELELAQHRVKDELKQAKAHSADIIDKANKRASEIIEAAKEAAKREAQIQA
                     KLAQEQIAQQVNHAKEELRKQVAKLAITGAEKILMREVDAKANSELLDNLIEEI"
     gene            2939..3496
                     /locus_tag="JBH85_10845"
     CDS             2939..3496
                     /locus_tag="JBH85_10845"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HAU0946699.1"
                     /translation="MKRFKMSDSTTIARPYAKAIFEHALAEKKLSEWSEYLTLLAQVV
                     LTPQATQFIANPASTDEQQIELLIEVCGSKFKKNDALNNLIKLLTTNKRLMLLPEIEA
                     LYEVYRAEQEKILEVDVVSYSELTPAQQQRLSESLSQRLSRKVSLKISIDPSLLGGAL
                     IRAGDLVIDGSVRGKLNMLGTSLAA"
     gene            3514..5067
                     /locus_tag="JBH85_10850"
     CDS             3514..5067
                     /locus_tag="JBH85_10850"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HAU0946700.1"
                     /translation="MSEQVALNPSEISELIRKKIDQFSVVSEARNEGTIVSLKDGIVR
                     LHGLADVMAGEMIEFPGGVYGLALNLERDSVGAVILGDSSTLAEGQKGKCTGRILEVP
                     VGKGLLGRVVDALGNPIDGKGPIESSGMSPIEKVAPGVITRKSVDQPVQTGLKAIDAM
                     IPVGRGQRELIIGDRQTGKTAIAIDAIINQKGTGVKCVYVAIGQKASSVASIVRKLEE
                     HGALEHTIVVVAGASDSAALQYIAPYSGCTMGEYFMERGEDALIVYDDLTKQAWAYRQ
                     ISLLLRRPPGREAYPGDIFYLHSRLLERAARINADEVEKLTNGEVKGKTGSLTALPII
                     ETQAGDVSAFVPTNVISITDGQIFLDVDLFNSGVRPAINSGLSVSRVGGAAQTKIMKK
                     LGGGTRLALAQFRELEAFSQFASDLDDATRKQLERGQRITELMKQKQYSPLTVAEMGV
                     SLFVVEKGYLDDVPVNEISSFEASLHDYMRSTHAALLHAINEAGAYDNEIEAKLKKAV
                     EEFKNTGSW"
     gene            5157..6023
                     /gene="atpG"
                     /locus_tag="JBH85_10855"
     CDS             5157..6023
                     /gene="atpG"
                     /locus_tag="JBH85_10855"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HAU0946701.1"
                     /translation="MAGAKEIRSKISSINKTRKITRAMEMVAASKMRKTQERMRASKP
                     YANKIYEVIKHIARAASEYRHPFMSEREIKRIGIIVVTTDRGLCGGLNSNLFRETIRT
                     IRNWQEHGKEVDIAVIGRKGQAFFRRVGGNILGSIDHLGDTPSINDFIGVVKIMLDAY
                     YNGTIDSLHIVYNEFINTMTQKPFVKQLLPLPKSEEDKKTLGHHWDYIYEPEAKELLD
                     EILERYIELQVYQAVVENIACEQAAKMIAMKSATDNAGDLIKEFQLAYNKARQAAITQ
                     ELAEIVGGAAAL"
     gene            6036..7412
                     /gene="atpD"
                     /locus_tag="JBH85_10860"
     CDS             6036..7412
                     /gene="atpD"
                     /locus_tag="JBH85_10860"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HAU0946702.1"
                     /translation="MSLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSDLVFEVQQQ
                     LGDGVVRTIAMGTTDGLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDA
                     EETWAIHRKAPSYEEQAGSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
                     LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRV
                     ALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGVEVSALLGRMPSAVGYQPTLAEEMGM
                     LQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVD
                     PLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKDIIAILGMDELSEEDKRVVTRA
                     RKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIKGFQGILAGEYDDLPEQAFYMVGSIEE
                     AVAKAKTL"
     gene            7424..7846
                     /locus_tag="JBH85_10865"
     CDS             7424..7846
                     /locus_tag="JBH85_10865"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HAU0946703.1"
                     /translation="MSITTHLDIVSAEHEIFSGVVEMVVATGELGEIGITPGHAPLLT
                     VLRPGEVRITLQGGTQDIYYVQGGMLEVQPHCVTILADVAERAEHLDEAAALAAKAKA
                     EAAIASKGGDIDYSVAAAELARAVAQIRAIQKTRKKMK"
BASE COUNT         2509 a         1444 c         1853 g         2429 t
ORIGIN      
        1 tgtcaaccgg acatttaaaa actcagagac agtactggat attgctgtgt tcaacagaga
       61 tattttaata gcagggcatg ttccaaccca ggagttgtac gatgaattac aactacgtct
      121 aagcaaagtt aaaggataca ggcggttatt caatcgtgta attatcaata aaatgccatc
      181 caactcgatc caggacagct ggattaccac gaaaatccgt agccaaattt ttgcagactc
      241 ttcaatcgat cctaacgctt tcaaggtggt tacttctgat cgtgttgtct atttgatggg
      301 agatgttcag acagaacaag ctgaaaaagt gattaaaatt gcaagataca caggtggtgt
      361 acagaaagta ataaaactta tgcggtatta tacttatcaa accagtacga atatggcctg
      421 atcagaatca ggccaatagc tgcacgtcca atccaggaag tggctaacct gggaggataa
      481 gtatactgta tcaatggaat cgacctttat ccagtcgttt tcgtattttt ctcaaattaa
      541 actcacgtaa cagccctgta gagccattta caatattttc ttcgtcgtta ttgttcgttt
      601 gattgcatgg atgagatctg caatgttgtc gatatgaaag gtgattttta ttatgcttgt
      661 gtgaaagccc atcgctataa cgattgctca ttttttcttg cagcctggct gctgtatgct
      721 gaattttctc tgacattttt taatccttag gcgaggttaa atagtaaatc gcttaacatg
      781 tgattaatgc taaaccctac attacaatta tagctcgtaa tttgaatatc aacgttgatt
      841 attacaattg tttaatttat aattcgcgcc gtgaaagtta ggtgaatatg tgaacaaaca
      901 gctgaataag cgcggaatca cgcgattgtg gctggcgcag ttgggagtta ctataatcct
      961 ggctggcctt tgcgcaattt tatttggtgt caatgcggcc agttctgcat tgcttggtgg
     1021 actggtttgt attataccaa atgcttactt tgctattaaa ctgtttaagc atcaaggcgc
     1081 gagagctgcg aggcaaatag ttaatagttt ttataagggt gaagcgttaa aaataatatt
     1141 gtccatgttc ctgtttgcat tagtattttt attatgtagg atcacaccgg cagcgttttt
     1201 tgcatcatac attttggttc ttatgacgca ttggtttgcc ccatggatta ttgtcaataa
     1261 acagaatagg ccaaaaagtg actgaaatgg tatctagcac aaactatatt aagcatcatt
     1321 taacgtacct tacctataac gtaaatgata tgacattcgg ttcaagtggt ggtttttgga
     1381 ctttgaacct ggatacaatc ttcttttcta tagccttggg tctaattgct ctggcaatta
     1441 tgtatttagc ggcaaggaaa gtaaccactg gtgttcctgg aaagttacaa aattttgctg
     1501 agctcatgct cgagtttgct gataatcaag ttaaagattg ttttcatgga aaaaataacc
     1561 taataggccc attggcatta actatcttca tgtgggtatt cctgatgaat tttatggata
     1621 tcgtgccggt agatatcctt cctgtacttg cgcagctagt cggtatacac tacctgaaag
     1681 ttgtaccaac taatgacttg aatttaacat ttggattgtc actttctgta ttttttctaa
     1741 tagtttttta cagtttaaaa ataaaaggcg ttaaaggttt tgttaaagag ctcaccctgc
     1801 agcccttcaa tcacccacta ttcattccat ttaatttatt gttggagttg gttgggctga
     1861 tagctaaacc catttccttg gcattacgac tttttggtaa cttatacgct ggcgaattaa
     1921 tatttatttt gatagcctta ctaaccttaa atgcaacaac gtcatcatta attagtacta
     1981 tgacactggg tacggcgcaa tttattcttg cactcgcctg gtccattttc catatattag
     2041 tgataacctt acaagcattt atttttatgg tactgactat agtttatttg agtttggccc
     2101 atgaagatca ttaaccgatt taattatcat catccattgt aaaggggata aaatatgcaa
     2161 gctgctgaat taatagcaca agttcaaagt atgaccgtca ttgcggttgc cttgttgata
     2221 ggtttaggtg cgttaggcac agccataggt ttcggattgc taggcggtaa atttctcgaa
     2281 ggctcagctc gtcaaccaga aatggtacct atgttacaag ttaaaatgtt tattgtagct
     2341 ggtttgcttg atgcggtaac catgattggg gtaggtattg cattattctt tacctttgct
     2401 aaccctttcc taagcagcct gggttcttga taacacacaa atagggcgct atgcgccctc
     2461 actgttacag gagaatatac tttggatatt aatttaacat taatagttca aatgttggtt
     2521 tttgccgcgt ttgtactatt cactatgaaa ttagtttggc ctccactagc aaaagcactt
     2581 gaagaaagac aagataaaat tgctgatgga ttggctgctg ctgaaagagg gcgcaaagag
     2641 ttggagttgg ctcagcatcg tgtaaaagat gagttaaaac aagccaaggc tcactctgct
     2701 gatattattg ataaagcgaa taagcgagca tcagagatta ttgaagcagc aaaagaggcc
     2761 gcaaaacgcg aagctcaaat tcaagcaaaa ctcgcgcaag aacaaattgc tcaacaagta
     2821 aatcacgcca aagaagaact gagaaaacaa gttgcaaagc tggctattac tggggcagag
     2881 aaaattttaa tgcgagaggt agatgcaaaa gcgaatagcg aactgttaga taacctaatt
     2941 gaagagattt aaaatgtctg atagtaccac tatagccaga ccctatgcaa aagcgatatt
     3001 tgaacatgct ttagcagaaa aaaaactgag tgaatggtca gaatatctta cattactggc
     3061 tcaagttgtt ttaactcctc aagctactca gtttatcgct aatcctgcat caacagatga
     3121 acaacaaatt gaacttctta ttgaggtatg tggttcaaag ttcaagaaaa atgatgcact
     3181 aaataattta atcaagctat taacaaccaa taaaagattg atgttgttgc cagaaattga
     3241 agctctttat gaagtatata gagcagagca agaaaaaata ctggaggttg atgtagtcag
     3301 ctattccgaa ttgactccag cgcaacaaca gcgtttgagc gaatccttaa gtcaaagatt
     3361 atcacgtaag gtttctttaa aaataagtat tgatccctcc ttgcttggcg gagcgctaat
     3421 tcgagcaggc gatttagtta tcgatggttc agttcggggc aagcttaata tgcttggcac
     3481 cagcttggcc gcttaattta gaggatagtt tccatgtcag aacaagtagc gttaaatcct
     3541 tctgaaatca gtgaattaat cagaaagaaa atagatcaat ttagtgtggt ttctgaagca
     3601 cgaaatgaag gtactatcgt tagtttgaaa gacggtattg tacgactgca tggtcttgcc
     3661 gatgttatgg caggtgaaat gatagagttt ccaggagggg tctacggatt ggctcttaac
     3721 ctggagagag attctgttgg tgctgtaata ttaggcgact catccacatt agctgaaggg
     3781 caaaaaggta aatgtacagg tcgtattctg gaagtcccag ttggaaaagg tcttttggga
     3841 cgtgtcgttg atgctttagg aaatcctata gacgggaaag gcccgataga gtcatcaggt
     3901 atgtctccaa tagaaaaagt cgctcctggt gtaattacac gtaaatcagt agatcaacct
     3961 gttcagacag gattaaaagc aatcgatgcg atgatccccg ttggaagagg tcagcgagag
     4021 cttattattg gtgaccgcca aactggtaaa actgccattg ctattgatgc gattatcaat
     4081 caaaaaggta ccggcgttaa atgcgtatat gtagccattg gtcaaaaggc ttcatccgtt
     4141 gcatcgattg ttagaaaatt ggaagagcat ggcgctcttg agcatactat tgttgtggta
     4201 gcgggagcct ctgattcagc agcactccaa tatatagcac cttactcagg ttgtaccatg
     4261 ggtgagtatt tcatggagcg tggggaagat gcattgattg tttacgatga tttaactaaa
     4321 caagcatggg catataggca gatctccttg ttattacgtc ggccaccagg tcgcgaagct
     4381 tatcctggtg atattttcta tttgcattct cgcttgttgg aaagagccgc aagaattaat
     4441 gccgatgaag tagaaaaatt aactaatgga gaagtgaagg gtaaaacagg atcactgact
     4501 gcattgccga ttatcgaaac acaagcggga gatgtgtcag ccttcgtacc aacaaacgta
     4561 atctctatta ccgatgggca aatattcctt gatgttgact tatttaactc aggtgttaga
     4621 ccagcaatca attccggact gtccgtttca cgggttggtg gtgctgcaca aacgaaaatc
     4681 atgaaaaagc ttggtggtgg tactcggctt gctctggcac aattccgtga gttagaagca
     4741 ttctcccaat ttgcatctga tcttgatgat gcaacacgta agcagctgga gcgtggacaa
     4801 cgcattacag agctgatgaa acaaaagcaa tactccccac ttacagtggc tgaaatgggg
     4861 gtaagcttgt ttgtggtaga aaagggatac ttggacgatg tacctgtaaa tgaaatcagc
     4921 tcgtttgaag cttccttgca cgattacatg cgcagtaccc atgccgcttt attacatgca
     4981 attaatgaag ccggtgctta tgataatgaa atcgaagcaa aactgaaaaa agcagtagaa
     5041 gagttcaaga acacaggcag ttggtaaggt atggcctcaa agagctaact ctttgaggca
     5101 caaaggccat tatttgaaag taatggcctc taaaactaat taaggcgaat tgaaagatgg
     5161 ctggagcaaa agaaatacgt tcaaaaattt cgagtattaa taaaactcga aaaattactc
     5221 gagctatgga aatggtggct gcaagcaaaa tgcgcaaaac gcaagaaaga atgcgcgctt
     5281 ctaaacctta tgcgaataaa atctatgaag tcataaagca tattgctcga gcagcatctg
     5341 agtacagaca cccatttatg agtgagcgcg aaatcaagcg tataggtatt attgttgtca
     5401 ccacagatag aggtctttgt ggtggtttaa actcgaatct atttcgtgaa acaattcgta
     5461 ctattcgtaa ttggcaagaa catggcaagg aagttgatat cgctgttatc ggaagaaagg
     5521 gccaggcctt ttttaggcgt gtgggtggga acatattagg ttccatagat catctgggtg
     5581 atacaccgag tatcaatgat ttcattggtg ttgtaaaaat aatgcttgat gcttattaca
     5641 atggcaccat tgattctttg cacattgtat acaatgagtt cattaataca atgacgcaaa
     5701 aaccttttgt aaaacaatta ttgccgttac caaaatcaga agaagataaa aaaacattgg
     5761 gtcatcattg ggactatatt tacgagcccg aagctaaaga attattagat gaaattttag
     5821 agcgatatat tgaattacaa gtgtatcaag ctgttgtaga aaacattgct tgtgaacaag
     5881 ctgcaaagat gatagcaatg aaaagtgcaa cggataatgc tggtgatttg attaaagaat
     5941 ttcaattggc ttataacaaa gcccgacaag cagccattac tcaagagttg gcagaaattg
     6001 tcggtggcgc agccgcttta taaagagggt atataatgag cttaggaact gtggtagaag
     6061 taattggtgc ggtagttgac gtagaatttc ctcgtgatag cgtgcctaaa gtcaatgatg
     6121 cgttaaagct tgttgatagt gatctggttt ttgaagtgca gcagcaactt ggagacggag
     6181 ttgtgcgtac tattgccatg ggaacaaccg atggtttaaa gcgaggatta aaagcagaaa
     6241 atacaggcca tcctattcaa gtgccagtag gtaagaaaac tttgggacgc attatggatg
     6301 ttcttgggcg tcctgtagat gatgctgggc ctatcgatgc tgaagagact tgggctattc
     6361 atcgtaaagc accaagttat gaagagcaag ctggcagcca ggaattattg gaaactggta
     6421 ttaaagtaat tgatttgctt tgcccttttg ccaagggagg taaagttggt ctattcggtg
     6481 gtgccggtgt aggcaaaacc gttaacatga tggaattaat acgaaacatt gcaattgagc
     6541 atagcggtta ttcagtgttt gcaggggttg gtgaacgtac ccgtgaagga aacgacttct
     6601 atcatgagat gaaagactct aatgtattgg ataaagtatc gcttgtttat ggtcagatga
     6661 atgagccgcc aggaaaccgt ttgcgtgttg ctctaaccgg tttgactatg gctgaaaaat
     6721 tccgggatga agggcgagac gttcttttgt ttatcgataa tatttatcgt tataccttgg
     6781 ctggggttga agtatctgcg ctgttaggcc gtatgccttc tgcagtagga tatcagccga
     6841 cattagcaga ggaaatgggt atgctgcaag agcgcattac ctccacaaaa acaggttcta
     6901 ttacttccat acaagctgta tatgtacctg cagacgactt gactgaccca tcaccagcta
     6961 caacctttgc acacttggat gccactgtag tattgtctcg tcaaattgct gaattaggta
     7021 tttatcctgc ggttgatccg cttgattcta catcacgtca gctggatcca ttgattgtag
     7081 gtcaagagca ttacgatacc gcacgtcgtg tacagcaaac cttgcaacga tataaagaat
     7141 taaaagatat tattgcaatt ttgggtatgg atgaactgtc tgaggaagac aaacgagttg
     7201 taactcgagc tcgtaaaatc caaagattct tatctcagcc atttttcgtt gcggaagtat
     7261 ttacaggttc tcctggtaaa tacgtatcgc ttaaagatac catcaaaggt ttccaaggca
     7321 ttcttgctgg tgaatatgat gatttgcctg aacaggcatt ttatatggtt ggaagcatcg
     7381 aggaagctgt tgcaaaagct aaaaccttat gaggcaagat aatatgagta ttacaacgca
     7441 cttggatatt gttagtgcag agcatgaaat tttctctggt gtggtagaaa tggtagttgc
     7501 aactggagag ttgggtgaaa ttggaattac tccagggcat gctccattac taactgtgct
     7561 aaggccgggt gaagttagaa ttactttgca aggtggtaca caggacatat actatgtgca
     7621 gggtggaatg cttgaggttc agcctcactg tgtaacaatt cttgctgatg tggcagaacg
     7681 agccgagcac ttggatgaag ctgctgcatt ggcagctaaa gcgaaagctg aagccgctat
     7741 agccagtaaa ggaggcgata ttgattactc tgttgctgca gcagaattgg ccagggctgt
     7801 cgctcaaata agagcaattc aaaagaccag gaaaaaaatg aagtaagagt ttcctgtttg
     7861 tggaaactgc tttgctatga ataccttata ctcctctaca aaacgggttt cttcccgata
     7921 ggaaaaaccc gtgttttact ctcttagtaa atgtaatttt gtcgccgtat ctttctctct
     7981 aatacaccag aaaatagtgt gctaactcta atgctttgca ttgctctatt atttgaggga
     8041 attcaagtta tctgcggatg catagatatg gtatccagta tgtacattgc cattatggtt
     8101 gaaaggcaat accaggggca attggtcatt taaaaatcaa gtggtaacaa ctgaaatttg
     8161 aaaatttgtt tatagtggag agaacaattt acaacttata aaaaattctt ggtaattaac
     8221 aacaagttat cttat
//
LOCUS       DACVWI010000134         8223 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.134, whole genome shotgun sequence.
ACCESSION   DACVWI010000134 DACVWI010000000
VERSION     DACVWI010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8223
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.134"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            187..642
                     /locus_tag="JBH85_10870"
     CDS             187..642
                     /locus_tag="JBH85_10870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HAU0946704.1"
                     /translation="MPDITHYLKPMVLFSGLLVATFAMAEATKAEETSTVKLSTILQQ
                     LSDQGYKNIHDAEIDDGVLTVEGSNEQGVKFEIHIDPATGKILKKQEHPQPKYSIIDI
                     TKKIENEGKFKIIEIEFDEGIYKIKGETASHEKKKLYIDPNTGEAKTNH"
     gene            complement(723..1544)
                     /locus_tag="JBH85_10875"
     CDS             complement(723..1544)
                     /locus_tag="JBH85_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0946705.1"
                     /translation="MFLVSISIKTNKESIMSKTIYFFSNNLKLEGKLEEPTGQCLGYV
                     LFAHCFTCGKDIAAASRIASALVANGFAVLRFDFTGLGSSEGSFSETNFSSNVEDLVA
                     AADYLRTHYQAPVLLIGHSLGGAAVLLAAKKITEVKAIATIGAPASAHHVKHHFSADL
                     SKIESDGEAHVTLGPRSFTIKKQFLQDIDRYQETIKSDAGKALLIMHSPIDKVVSIKE
                     AEKIYKAAQHPKSFISLDKADHLLSNKRDSQYAAEVIAAWASRYLAPSLEDKRAE"
     gene            complement(2002..2283)
                     /locus_tag="JBH85_10880"
     CDS             complement(2002..2283)
                     /locus_tag="JBH85_10880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SapA"
                     /protein_id="HAU0946706.1"
                     /translation="MLICKTQITQDWVEFADKATKFAWQFGIGSLYALSDSLLIDINY
                     NFISIGEVRNSGQYNAIAANNTPASGAPTKFTNVYSNQAEIGIHYQFNT"
     gene            2495..2914
                     /locus_tag="JBH85_10885"
     CDS             2495..2914
                     /locus_tag="JBH85_10885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HAU0946707.1"
                     /translation="MKTYRKELWFNIPERMGFINITDKVIECLKESRIQEGLILVNAM
                     HITASVFINDDESGLHQDYKKWLERIAPHQPIEQYRHNDTGEDNADAHIKRQIMGREV
                     VVAITEGRLDFGPWEQIFYGEFDGHRDKRVLVKIIGQ"
     gene            complement(3168..4145)
                     /locus_tag="JBH85_10890"
     CDS             complement(3168..4145)
                     /locus_tag="JBH85_10890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946708.1"
                     /translation="MNLKKEVFLNQNCAEMMIKKAARLILGSDLDFEYTRDVQDIQID
                     LGPAFMFSPDEEKTLWVSGKNQETLERDLATLNKSSAYFFRTGTQGGAGHWQVLYYEA
                     AKSGWVSYSSQSNHFQVTDSNGKLTASGKGLLVPHANWGKENGNYAFLLVNASAQNII
                     HAANFVYIFRTQNEDAAIQYCALNQALHPEIKRITITKVQTQTRLTPEIHCPRGDLSY
                     ANLKNVYSKHLALLHVINRLEAGSKSYNPYWMGSQEKLNKIFEALGHCYQKGLDVDNE
                     LNNSNSKLSKAINMRRLPSLFSFWCEKNESFVESRKIIEEHRICRLNNL"
     gene            4366..4845
                     /locus_tag="JBH85_10895"
     CDS             4366..4845
                     /locus_tag="JBH85_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946709.1"
                     /translation="MKEKTAKQLKLFIIYLLSYWLLSIISCLIAFGYDDSLRMLLASP
                     KSDLSGALLFFSSFIAAALLFVFRYKTFSDKPYPYFIFGFYVGNVSLLMLFILDAFIR
                     ELIVWKFPEFLLVFISPFVELVLSYLFFGFAFLAIIPAVTSAFILYAVQRKLLLSPI"
     gene            5020..5232
                     /locus_tag="JBH85_10900"
     CDS             5020..5232
                     /locus_tag="JBH85_10900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946710.1"
                     /translation="MGIVKISDELHEATKLMARAMSRSINSQAEYWIRIGKLAEENPS
                     ITYTDILKILVHQASLGEIYDVSEDA"
     gene            5201..5974
                     /gene="map"
                     /locus_tag="JBH85_10905"
     CDS             5201..5974
                     /gene="map"
                     /locus_tag="JBH85_10905"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HAU0946711.1"
                     /translation="MKYTMLVKTPEEIKKMRVAGQLAASVLEMIEPYVIAGTSTKELE
                     QICRQYIVEDLKAIPSTLNHYGFPACICTSINHVVCHGIPSEKKLKNGDIINIDVTVQ
                     KDGYIGDTSKMFLVGNIKPFAKKLVEVTQECLYKAISIVRPGAHLGDIGNIIQTHAEQ
                     HGYSIVREFGGHGIGKSMWEDPHIMHFGKPNTGLRLQAGMTFTIEPMLNLGRKEVKTL
                     GDGWTVVTKDHKLSAQWEHTILVTDNGHEILTLRADEHL"
     gene            6001..7161
                     /locus_tag="JBH85_10910"
     CDS             6001..7161
                     /locus_tag="JBH85_10910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0946712.1"
                     /translation="MFLQASRRKTYTIIKLKETQSIKGNSMPCEKCDSAATYHLSGTY
                     QLLILPPRGHCYSKLLKHLTENNFDINKRDSGIIELLFTAERAQDIGHALERCYSQAE
                     LEDSKAVLLPIDIADRNVERVLNHTHSLKKIVGLCLSQWLVGLIENQGLSTFCQPILH
                     NTTLKPYGFECLLRGKQDNNILPSSDLFGAAKSSDMLFLLDKKARICHIENMSKIDIA
                     DKKIFINFNPTAIYDPLFCLTTTNQSLKKTSIKPAQIVFEVTESDEVKDKKHLLKIID
                     YYRNQGYCVALDDLGSGYSSLNLLTELQPDYVKLDQELISQIHTNEFKQIILEKICEM
                     ATKLKIKIICEGIETEDELQIIKNYAIDFYQGFLFEKPMPYEKIPDYIKASA"
     gene            7191..8069
                     /locus_tag="JBH85_10915"
     CDS             7191..8069
                     /locus_tag="JBH85_10915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAU0946713.1"
                     /translation="MLTNIERAKLQLIDETNDMVIITKAEPLDAPNGPEVVWVNKAFE
                     NISKYKANEIIGQTPRILQGKETNQNTLKMIKEALKAQTNINVDLLNYTKDGTPYWIS
                     FSIVYLRDGQGNLCYLGAIEKDITALKNLNFKLSEKAKTDPLTNVYNQENFFIAGNEA
                     IKNFHQNQEAVGLLFFDVDDFKGINDTQGHIYGDMILKKVAQESLKLVRKTDNVFRYG
                     GDEFAIIFSGIDVKILERKAQQLQKKLAKSHISVSIGGTISIQSDKSINTLLARADEA
                     LYYVKANKKGLFFIAE"
BASE COUNT         2702 a         1583 c         1482 g         2456 t
ORIGIN      
        1 actaatgaat acgaagtaag tactataaga gtcaaaatcc attgtaaaat caaagtaact
       61 ttgcattcca tcgctcaaat gactatagtt aaacaataat tttttaacac caaacctcat
      121 caggcgattc tttttttgcg atttatttga attttaatac catactatca ataggagata
      181 agcaggatgc cagatattac acattacctt aaacccatgg ttttattttc aggactattg
      241 gttgctactt ttgccatggc cgaagcaaca aaagctgagg aaacttctac tgtaaaatta
      301 agtactattc ttcaacagtt gtctgaccag gggtataaaa acattcatga cgctgaaatt
      361 gacgatggcg tattgactgt tgaaggcagc aatgaacaag gcgttaagtt tgaaattcac
      421 atcgatccag ctactggcaa gattttaaaa aaacaagaac atccacaacc aaaatattcc
      481 atcatagaca ttaccaaaaa aattgaaaat gagggtaaat ttaaaatcat tgaaattgag
      541 tttgatgaag gtatttataa aataaaaggt gaaacagcca gccatgaaaa aaagaagcta
      601 tatatcgacc ccaataccgg ggaagccaaa acaaatcatt aatcccatat aaaggggcaa
      661 gcctttcttt tttccttagt atgcccaatt attctcccta gaggaaagga agagagctgt
      721 ttctactcag ctcttttatc ctctaatgaa ggagctaaat aacggctggc ccaggcagca
      781 ataacctctg cggcgtattg tgagtccctt ttgttactta ataaatgatc agccttatca
      841 aggctgataa aacttttggg atgttgggcg gctttataga ttttttctgc ctctttaatg
      901 gataccactt tatctatagg agagtgcata atgagtaagg ctttaccagc gtcgctttta
      961 atcgtttcct ggtatctgtc aatatcttgt agaaattgtt ttttaatagt gaatgagcgt
     1021 gggcccaggg taacatgagc ttcgccatca gattctattt tacttaaatc agcagaaaaa
     1081 tggtgtttga catgatgagc actggcagga gcaccaatag tagctattgc ctttacttca
     1141 gtaattttct tggcggcaag gagcacagcc gcaccaccaa gactatggcc tatcaaaaga
     1201 acaggtgctt gataatgagt ccttaaatag tcagcggcag caactaaatc ttcaacattt
     1261 gaagaaaaat tcgtttctga aaaggaacct tcgctgctac ctaagccagt aaaatcaaac
     1321 cgtaacaccg caaatccatt agcaaccaaa gcgctggcaa ttctgcttgc agcagctata
     1381 tcttttccgc aggtaaaaca atgagcaaat aaaacataac caaggcattg acctgttggt
     1441 tcttccagtt ttccttccag tttcaaattg ttactgaaaa aatatatagt cttagacatt
     1501 atgctttcct tgtttgtctt gattgagatg ctaacaagaa acattcaaat ctgtttatca
     1561 atccattttc ttactctaaa atcaattcaa tttattccta ctgtagagtt tggatattct
     1621 ggaagtgttc acatactaac aaatatagac acatttaagc caacttccca atttatttgg
     1681 aatatttatt aaccttatag ctatgatgta gcgaaacgca atcaaggaca acgatttata
     1741 tacattacaa tctacttaaa gcaccgctcg tttaacatca tggaagattg actgcccact
     1801 ttttccatca tgaggtaaag tccgtaaaat tacgggaaaa tttgccagga aaactatgag
     1861 tgaagtacca ggcagctaaa aaccaggaaa gacctgagta cgaaggtagt tttcatttca
     1921 gccgagtaga tagcaatggg caggttaaac agtggctccc attgatgtca tctttttact
     1981 tcaacctgcc ttgaattggc gctaagtatt aaattggtaa tgaataccaa tttcagcctg
     2041 gttgctatac acgttggtga attttgttgg cgcacctgaa gctggagtat tattggctgc
     2101 aatagcatta tactgacctg aattcctcac ttcgccaatt gaaataaaat tataattgat
     2161 atcgattaac aacgagtcac tgagggcata gaggcttcca ataccaaact gccaggcaaa
     2221 ttttgtggct ttgtcagcga actctaccca atcttgtgtt atctgggttt tgcaaatcaa
     2281 caataatata attgacccga atacattaag gcatttgcat ttttaccata agcctaaaat
     2341 gcctcaatgg attgttctct ccacaacccc atgattcatg ccttaagacc cagaagagtt
     2401 ctctaataaa gattaaattg tcatccattt gaaataaaac caggaatgct atatgttgcc
     2461 agttattgat ttatgcccaa atcattgtca aaacatgaaa acataccgaa aagaactatg
     2521 gtttaatatc ccagagcgta tgggatttat caatatcaca gataaagtca ttgaatgctt
     2581 aaaagaaagt cgtattcaag agggtttaat attggttaat gccatgcaca tcaccgcttc
     2641 tgtattcatc aatgatgatg aaagcggctt gcatcaggat tataaaaaat ggcttgagcg
     2701 gatagcaccc catcaaccca ttgagcaata ccgccataat gacactggtg aggataatgc
     2761 tgatgcccat atcaaacgcc aaatcatggg gcgagaagtg gttgtcgcta ttacagaagg
     2821 aagactggat tttggtccat gggaacaaat attctatggt gagtttgacg gccaccgtga
     2881 taaaagagtc ctagtaaaga ttatcggtca ataaagcatg acttgaatgg atcatgagta
     2941 attaaagcat aaaaggtccg gtttttcctt tttccttaat aagctctgtg ccctaattcg
     3001 cgccaaagaa aacggaaaat cctgcccatg atctaaaatt taactggagc ctctggctcc
     3061 attagatgtt actgcagact ccatttgaga tagtaatgac cgttaactgt tatatcctat
     3121 acaacatcaa caacatgaga ggtcatgcca taaactatac acagctttta taaattattt
     3181 agcctgcaaa tcctgtgttc ttcaattatt tttcttgatt ccacgaaaga ttcgtttttt
     3241 tcacaccaaa aactaaaaag cgatgggagg cggcgcatat tgattgcttt ggataatttg
     3301 ctgttgctat tgtttaattc attatcgaca tcaaggcctt tttgataaca atgtccaagt
     3361 gcctcaaaaa ttttattgag cttctcttga ctacccatcc agtaaggatt gtagctttta
     3421 cttcctgctt ccaggcggtt gataacatgc aacaaggcta gatgcttact gtatacattt
     3481 ttaagattcg cataagataa atctccccgg ggacaatgaa tctctggtgt taacctcgtt
     3541 tgtgtttgaa ctttggttat agttattctc tttatttctg gatgaagcgc ctgattgagc
     3601 gcacaatatt gtattgcagc atcctcattc tgagttctga aaatatacac gaaattcgct
     3661 gcatgaatga tgttttgtgc acttgcgttt acgagcaaaa atgcataatt tccattttcc
     3721 tttccccaat tggcatgggg aacaagcagt cccttaccac tggctgttaa cttcccattg
     3781 ctgtcagtca cttgaaagtg attggattga gatgaatagc taacccaacc tgatttagca
     3841 gcctcatagt acaggacttg ccaatgacca gcccctcctt gagtaccagt ccggaaaaag
     3901 taggcactgc ttttattaag agtcgccaga tccctttcca acgtttcctg atttttccca
     3961 ctaacccaca gtgttttttc ttcgtctgga ctgaacataa aagcagggcc cagatcaatt
     4021 tgaatatctt gaacatctcg agtgtattca aaatcaagat cactgcctaa aatcaaccga
     4081 gcagctttct ttatcatcat ttctgcacaa ttttggttta agaacacttc tttttttaag
     4141 ttcattggaa aatcccagtc atctttcgat tattataata caaaataatc acataaaaag
     4201 ctaagtgatt gcttcgatta taaagccatc ctaatatttg agtccccctt aagacagcag
     4261 tctgtggccc cgttcaggag catgcccatg catcaatgcc caaagagtcg tgttaaaatc
     4321 ccaaagatag aagcgccgtt taaaacagct tgattaaaat tggttatgaa agaaaagacc
     4381 gcgaaacaat tgaaattgtt tattatctat ctacttagct attggttatt aagcattatt
     4441 tcatgcctta tcgctttcgg ttatgatgat tccctacgca tgttgcttgc ctcgccaaaa
     4501 tcggatctca gcggtgcttt attatttttc tcttcattta ttgccgccgc tttgttgttt
     4561 gtttttcgat acaaaacttt ttcagataaa ccttatcctt attttatttt tggattctac
     4621 gtaggaaacg tctcgttact gatgttattc atattggatg cttttattcg cgaactcatt
     4681 gtatggaaat tccctgaatt cttacttgtt tttatatcac cattcgttga attagtgctc
     4741 tcctatctat tttttggctt tgcattcctg gcaatcattc cggcagttac cagtgctttt
     4801 attctctatg cagttcagag aaaattatta ttgtcaccaa tataaacctc cagagtcttc
     4861 tctttttcat ttgtaatcgc tcccttattc tcgcgttgga aaaaaggaag cctgccctta
     4921 atctattgcc cgatttattt attccccaaa aaatatattt tataatgaaa tgtatcattt
     4981 tatattaaaa cgctatatta tacatttttt ggagaaaata tgggcatagt aaaaatttcg
     5041 gacgaattgc atgaagcaac caaactgatg gcaagagcca tgagtcggtc aatcaattca
     5101 caagcagaat attggattag aatagggaaa ttggcagaag aaaatccctc cattacctat
     5161 actgacattc ttaaaatttt agtccatcaa gcttcactag gtgaaatata cgatgttagt
     5221 gaagacgcct gaagaaataa aaaaaatgcg cgttgctggg cagttggccg catctgtact
     5281 tgaaatgata gagccttatg tcattgcagg taccagtaca aaggagcttg aacaaatttg
     5341 tcgtcagtat attgtcgagg atttgaaagc gattccctcg acgttaaacc actatgggtt
     5401 tcccgcatgc atttgcactt cgataaatca cgtggtatgc catggcatcc cctcagagaa
     5461 aaaacttaaa aatggcgaca tcattaatat tgatgtgact gtgcaaaagg acggttatat
     5521 tggggatacc agcaaaatgt ttctcgtcgg caacatcaag ccatttgcta aaaagttagt
     5581 ggaagttacc caggaatgcc tatacaaagc tatttcaata gttcgcccag gggctcatct
     5641 tggagacatc ggaaacataa tccagacaca tgcagaacaa catggatatt caatagtacg
     5701 agagtttggt gggcatggaa ttggtaaatc catgtgggaa gatcctcaca ttatgcactt
     5761 cggtaaacca aataccggat tacgattaca agcaggaatg actttcacta ttgagccaat
     5821 gctcaatttg ggccgtaaag aagtcaagac tttaggggat ggttggactg ttgtcacaaa
     5881 agaccataaa ttatctgcac aatgggagca taccatttta gtgaccgata atggacatga
     5941 aatactgacc ttaagagcag acgagcacct atagacatat ctcctcttgc ttggtaatta
     6001 ctgttcctcc aagcctcgcg acggaaaaca tatactataa tcaaactaaa ggaaacccag
     6061 tcaatcaagg gaaatagcat gccttgcgaa aaatgcgatt cagcggcaac ctaccattta
     6121 tcgggaacct accagttact cattttaccc ccacgaggtc attgctattc aaaattatta
     6181 aagcatttaa ccgaaaataa ttttgatatc aataaaagag acagcggaat tatcgaatta
     6241 ttatttactg ctgagagagc acaagacata ggtcatgcac tggagcgatg ttattcacaa
     6301 gcggaacttg aggacagcaa agcagttttg ttgccaattg atatcgcgga cagaaacgta
     6361 gagagagtac tcaatcatac gcattcatta aaaaaaattg tggggttgtg tttgtctcaa
     6421 tggctggttg gactcattga aaatcagggg ctatcaacct tctgccagcc tattttgcat
     6481 aataccacac tcaaacccta tggttttgag tgccttctca ggggaaagca agataataat
     6541 atactgcctt cctctgattt atttggagca gcaaaatcga gcgacatgct ttttttgtta
     6601 gataaaaaag cacgtatatg ccacattgaa aatatgagca aaattgacat cgctgacaaa
     6661 aaaatcttca ttaattttaa cccaacagcc atttacgatc cccttttttg cttgacaaca
     6721 acgaaccaat ccttaaaaaa aacatccatt aaacctgcac aaattgtatt tgaagtcact
     6781 gaaagtgatg aagtaaaaga taaaaaacac ttgttaaaaa taatagatta ttacagaaat
     6841 caaggttact gtgtcgccct tgacgatttg ggctctggtt acagctcttt gaatttgctt
     6901 actgagttac aacctgatta cgttaaactt gatcaagaat tgattagcca gattcataca
     6961 aatgaattca aacaaatcat attggaaaaa atatgtgaga tggctactaa actaaagata
     7021 aaaataatct gcgaaggcat agaaacagaa gacgagttac agattataaa aaattatgcc
     7081 atcgattttt atcaaggttt tttgtttgag aaacctatgc cttacgaaaa aatacccgac
     7141 tatatcaaag caagcgcata aaaatggatt ggctattgga tatatgacaa atgcttacaa
     7201 acattgaaag agcaaaactt caattaattg atgaaaccaa cgatatggtc attataacca
     7261 aagcagaacc acttgatgca cctaatggtc cggaagtggt ttgggtgaat aaagcctttg
     7321 aaaacatttc aaaatataaa gccaatgaaa ttattggcca aacaccacgt atccttcaag
     7381 gtaaagaaac caatcaaaac acattaaaaa tgataaaaga agcacttaaa gctcaaacga
     7441 atatcaatgt ggatttatta aactatacta aggatggaac accttattgg attagttttt
     7501 caatagttta tttaagagac gggcagggta atttatgtta tttaggcgca atagaaaaag
     7561 acatcaccgc actcaagaat ttaaatttta aattatctga aaaagcaaag actgatccgc
     7621 ttaccaatgt ttacaatcag gaaaatttct tcatcgcagg gaatgaagct attaaaaact
     7681 ttcatcaaaa ccaggaagca gttggattat tatttttcga tgtggatgat tttaaaggaa
     7741 taaacgatac gcaaggacat atctatggcg atatgatatt aaaaaaagtt gcccaggaat
     7801 ctttaaagct tgtccgtaaa acggataacg tatttcgata tggcggcgat gagtttgcta
     7861 ttattttttc aggcattgat gtgaaaatcc tggaaagaaa agcacaacaa ctacaaaaaa
     7921 aattggcaaa atctcacatc tctgtgagca ttggagggac tatttcaatc caaagtgaca
     7981 aatcgataaa caccctcttg gcgagagcgg atgaagcact ctattacgtc aaagccaaca
     8041 aaaaagggtt atttttcatc gcagaataat cacattttga cgctgccaaa ttgcgaggaa
     8101 attaaaacca gtgacgttca atccaatgac atcgcctttt aaacaattcc tttatgccat
     8161 gaaaaaataa ttattttcag ttttaaccat gcttctctca aaagtcattt tacataatca
     8221 tgt
//
LOCUS       DACVWI010000135         8175 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.135, whole genome shotgun sequence.
ACCESSION   DACVWI010000135 DACVWI010000000
VERSION     DACVWI010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8175
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.135"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1069)
                     /gene="carA"
                     /locus_tag="JBH85_10920"
     CDS             complement(<1..1069)
                     /gene="carA"
                     /locus_tag="JBH85_10920"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HAU0946714.1"
                     /translation="MSIFMINKSAILALADGTVYEGLSVGASGDSVGELVFNTSMTGY
                     QEMLTDPSYARQIITLTTAHVGNTGCNMEDMESTKVWAAGLVMRNCTAIPSNYRAEQS
                     FPDWLSKNGVVAISGIDTRALTLKLREKGSIGACISTNVEKPEIVVAKAKSFAGLQGA
                     DLALEVTRQTIERWHEGRGMWSLDKQPQQLHVVAYDFGVKHNILRILHDKGCHITIVP
                     AKTSAEEVLAMNPNGVFLSNGPGDPQACDYAIKATQVFLDNNIPLFGICLGFQILALA
                     CGGITKKMKFGHHGSNHPVVETTGKKRVFITSQNHGFAVDEDSLPNCLEVTHRSLFDN
                     SLQGIRHKTKPAFGFQGHPEAS"
     gene            complement(1153..2292)
                     /gene="dnaJ"
                     /locus_tag="JBH85_10925"
     CDS             complement(1153..2292)
                     /gene="dnaJ"
                     /locus_tag="JBH85_10925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HAU0946715.1"
                     /translation="MEQRDYYELLEVSRNASDAEIKKAYRRLAMKYHPDRNPGDTSAE
                     EKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVFEDIFENI
                     FSGGRGHGRQSRGQRGADLQFNVQLTLEEAAIGKEVEITVPRHGTCTVCEGSGAKKGT
                     SPKTCETCQGMGQVRIQQGFFSIQQTCPTCHGEGKIISDPCASCHGQGRVRESKKINV
                     KIPAGVDNGDRVRLSGEGEAGVHGGGSGDLYVQISLKKHAIFERHENDLHCEVPISFA
                     TAALGGSIEVPTLEGRVTLKIPAETQTGKVFRLRSKGMKSVRGYGQGDLLCKVVVETP
                     VNLSREQKELLNKLQDSLENAKGTHSPKTSSWFAGVKKFFEDMKF"
     gene            complement(2482..4416)
                     /gene="dnaK"
                     /locus_tag="JBH85_10930"
     CDS             complement(2482..4416)
                     /gene="dnaK"
                     /locus_tag="JBH85_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HAU0946716.1"
                     /translation="MAKIIGIDLGTTNSCVAVMEGDKPKVIENSEGHRTTPSIVAFTD
                     DNEILVGQSAKRQSVTNPEKTLFAIKRLIGRRFDDPIVQKDIKMVPYKIMKADNGDAW
                     VRVKDQDKAPPQISAEVLRKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGMDKKRGDSVIAVYDLGGGTFDISIIEIAEVDGEHQFEV
                     LATNGDTFLGGEDFDLALIEYLASEFKKDTGIDLHNDPLALQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADASGPKHLNIKLTRAKLESLVEKLVERTIEPCKTALKDAGLTVSQI
                     NEVILVGGQTRMPLVQKTVEEFFGKEPRKDVNPDEAVAVGAAIQAAVLSGEVKDILLL
                     DVTPLSLGIETMGGVMTKLIEKNTTIPTKATQVFSTADDNQTAVTVHVLQGEREQASA
                     NKSLGRFDLRDIPPAPRGVPQIEVTFDIDANGILNVSAKDKATGKAQSIVIKASSGLS
                     EEEVAAMVKDAQSHAEEDKKFKEMAELRNQADSLIHSCEKSMKDLADELSEDEKRGIE
                     TAISELKEAVQGTDKARIEDKLKVLTDASAKMAERIYAKKSSEGQAAQGQTQSQESTK
                     PAEEGVVDAEFEEVKEEDKK"
     gene            complement(4561..5163)
                     /gene="grpE"
                     /locus_tag="JBH85_10935"
     CDS             complement(4561..5163)
                     /gene="grpE"
                     /locus_tag="JBH85_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HAU0946717.1"
                     /translation="MMSKQNKKDWKKFKDEHKEEHKVENEILEEETDEESQHQEPALG
                     HPSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISAL
                     LPVVDSLEQALQLADKNSDPSMHEGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHE
                     AMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVSTK"
     gene            5440..6777
                     /locus_tag="JBH85_10940"
     CDS             5440..6777
                     /locus_tag="JBH85_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HAU0946718.1"
                     /translation="MQEWSPTTWQKYSYLQAASYADEEQLNKVVEQLSLLPPLVTSGE
                     IKHLKNEIAQAGRGNAFILQGGDCAESFNDCRSEVISNKLKIILQMSLILLYGLRKPI
                     IRIGRIAGQYAKPRSSDYETINGVTLPSYRGDIVNSPEFTTTAREPNPKLLLQAYSCS
                     AMTLNFIRALLDGGFADLHHPQRWDLGFVEHSPQKNEYQHIVDSIEDALDFLNAIDGI
                     RSSSISKVDFYTSHEALHLHYEQALTRQLKDGKWYNLSTHLPWIGMRTAQTDSAHLEF
                     LRGVQNPIGIKIGPAATPEWLSEVLSIANPQKEEGRVLLYTRLGAKLIDRLLPPLIDT
                     VRKSKIPVTWSCDPMHGNTETTEDGTKTRHFDNILSELKQALEIHRSMGSYLGGVHFE
                     LTGDNVTECIGGARGLAPHDLKTAYHSLVDPRLNYEQSLEMAIQLSHQFRNES"
     gene            complement(6926..7987)
                     /locus_tag="JBH85_10945"
     CDS             complement(6926..7987)
                     /locus_tag="JBH85_10945"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HAU0946719.1"
                     /translation="MMFDLNQSLFLRALRRQPVERTPIWIMRQAGRYLPEYRKVREHA
                     GDFLNLCKNPELACEVTLQPLRRYALDAAILFSDILTIPDAMGLGLYFAEGEGPRFTN
                     PLQDTKAIHTLKIPSIPESLSYVFDAARLIRQEMPKELPLIGFSGSPWTLACYMVEGG
                     SSRDFKRILNLIYTEKEAAHLLLNKLAVSVTAYLIEQIKAGVNAVMIFDTWGGVLTPQ
                     NYKDFSLAYMHQIVQQLKKEYPDIPVILFTKNGGQWLEWMAETGCDALGVDWTCDLAS
                     ARKRVGGKVALQGNLDPAVLLTTKNCIRSEVGSVLASYGYGTGHIFNLGHGITPDVPP
                     ENVAIMIEAVHEISPQYHL"
BASE COUNT         2374 a         1845 c         1445 g         2511 t
ORIGIN      
        1 ggcttgcttc tggatggcct tgaaaaccaa atgccggttt tgttttgtgc cttattccct
       61 gtaaactgtt atcaaataat gaacgatgcg taacttccag gcaattgggc aatgaatcct
      121 catctacagc aaaaccatga ttttgacttg ttataaaaac acgttttttg ccagttgttt
      181 caactacagg atgattggaa ccatgatgtc caaatttcat ttttttagta ataccaccac
      241 atgccaaagc caaaatctga aacccaaggc atataccaaa taaaggaata ttattgtcta
      301 aaaacacctg tgttgctttg atggcataat cgcatgcttg gggatcaccc ggtccattgg
      361 ataaaaagac accattagga ttcatggcta aaacctcttc tgcagaagtt ttagcaggga
      421 ctatagtaat atggcatccc ttatcatgta agatacgtaa aatattatgt tttacaccaa
      481 aatcataggc aacaacatga agctgttgag gctgtttgtc tagactccac attccccgac
      541 cttcatgcca acgctctatc gtttgtcttg taacctctaa agccaaatct gcaccctgaa
      601 gccctgcaaa ggatttagcc tttgccacaa caatttcagg tttctccaca ttggtgctaa
      661 tacaggctcc gatagaaccc ttctcacgca atttcagtgt aagcgcgcgc gtatcaatgc
      721 cagaaattgc aactactcca tttttactta accagtctgg gaaggattgt tcagctctgt
      781 aattgctagg gattgcagtg cagtttctca tgacgaggcc ggctgcccag acttttgtgg
      841 actccatgtc ctccatgtta caaccggtat ttcccacatg agcagtagtt aaggtaatta
      901 tttgtctggc atacgaagga tcagtaagca tttcctgata gccagtcatt gacgtgttaa
      961 aaaccaactc accaacagaa tcaccactgg cccctactga caggccctca taaacagtgc
     1021 catcagctaa agctaaaatt gctgatttat taatcatgaa tatactcaat tatgttcaaa
     1081 gtatgcttat ccagcgtaaa ataggcaatc catgctgaaa acgacaaatc ttccaattgt
     1141 aacttaatta agtcaaaatt tcatgtcttc gaagaatttt ttcacaccgg caaaccagga
     1201 gcttgtttta ggtgagtgcg ttcccttggc attctctaat gaatcctgta acttatttaa
     1261 cagttctttt tgctctcgag ataaattgac cggtgtttct acaactacct tgcatagcaa
     1321 atcgccttgt ccatatcctc tgacagattt catcccttta cttctcaagc gaaatacttt
     1381 gcctgtttga gtttccgccg gaatttttaa agtgactcgg ccttccaaag tgggtacttc
     1441 gatcgagcct cctaacgccg cagttgcaaa actaataggt acttcacaat gcaaatcatt
     1501 ttcatggcgc tcaaaaatag catgtttttt caagctaatt tgaacatata aatctcctga
     1561 accaccacca tgcacccctg cttcaccttc tccgcttaaa cggactcgat caccattatc
     1621 gactccagcc gggattttga catttatttt tttactttct ctaactcttc cttgaccatg
     1681 acaactggca caaggatcag aaattatttt tccctcacca tgacaagtgg ggcaggtttg
     1741 ttgtatggaa aaaaaacctt gttgaattct gacttgcccc atgccctggc atgtttcaca
     1801 agtttttggg cttgtgcctt ttttagcccc cgatccctca caaacagtac aagtaccatg
     1861 tcttggaacg gtaatttcaa cttcttttcc tatagccgct tcttcaaggg tcaattgcac
     1921 attaaattgc aaatcagcgc ctctttgtcc acgtgattga cgcccatgcc cacgcccccc
     1981 tgaaaaaata ttctcaaaaa tatcttcaaa aacgtcacca aatcctccaa atccgccaaa
     2041 accacctggg cctccaccca ttgaaggatc cactccggca tggccgaatt gatcataagc
     2101 ggcgcgtttt tgcttatcgg acaagatgtt ataggctttt tgaatttctt taaatttttc
     2161 ttcggcagag gtatcacctg gattccgatc gggatggtat ttcattgcca gcctgcgata
     2221 tgctttttta atctctgcat cactcgcatt tcgacttact tctaaaagtt cataataatc
     2281 ccgctgttcc ataactgctc acaatttata acaatcactt aattttaatt ctctcagtcg
     2341 tatgaagact ctaaattagc ttaagtgcta tttcaataga caaacgggac gataatatcg
     2401 ccccgaccca aaatttattt attataaccc gatgaatcct tcttccgccc tcttaaatca
     2461 gagggcgaga gtaatattaa attacttttt atcctcttct ttaacttctt caaactcagc
     2521 atcaacaact ccctcttccg caggttttgt agattcctga gattgtgttt gcccctgagc
     2581 tgcctgacct tcagacgatt ttttagcata aatacgttca gccatttttg cggaagcgtc
     2641 tgtcaatact ttcagcttgt cttcaatacg agccttgtca gttccttgca ccgcctcttt
     2701 cagctcagaa attgctgttt cgatgcctct tttctcatcc tcagacaact catcagccaa
     2761 atctttcata gatttttcac agctatgaat caaactatct gcctgattgc gcagttctgc
     2821 catttccttg aatttcttat cttcttcagc atgcgattgg gcatctttca ccatagcagc
     2881 aacctcttct tcacttaaac cactggaagc tttgatgaca atggattgtg ccttgccagt
     2941 tgccttgtct ttggcagaaa cattcaagat accattggca tcaatatcaa aagttacttc
     3001 aatttgagga acaccacgag gagcaggagg gatgtcacgc aaatcaaacc gtcccagtga
     3061 cttgtttgct gaagcctgtt ctctttcacc ctgcaataca tgcacagtca ctgctgtctg
     3121 attatcatcg gctgttgaaa acacttgtgt agcctttgta ggaatagttg tgtttttttc
     3181 aatgagtttg gtcattacac cacccatggt ttctataccg agagacaaag gagtgacatc
     3241 gagtaaaaga atgtctttca cttcaccgga caatactgct gcctgaattg cagcacctac
     3301 tgccacagcc tcatcagggt ttacatcctt acgaggttct ttgccaaaga attcttccac
     3361 agttttttgt accagaggca tacgagtttg cccaccgacc agaataactt cgttgatttg
     3421 tgagacagta agccctgcat cttttaaagc tgttttacat ggctcaatag ttctctcaac
     3481 cagtttctcc actaaagatt ccagttttgc gcgagtcaat ttgatattta aatgttttgg
     3541 cccagaagca tctgctgtaa tgtaaggcaa attgacatca gtttgttgtg cagatgacaa
     3601 ttcaattttt gctttctcgg cagcctcttt caagcgttgc agagcaagag gatcattatg
     3661 caaatcaata ccagtgtctt tcttgaactc agaagccaaa tactcaatta aagccaaatc
     3721 aaaatcttct ccaccgagga aggtatcacc attggttgca agtacttcaa attgatgttc
     3781 accatccact tcggcaattt caataattga aatatcaaaa gttcctcccc ctaaatcata
     3841 taccgcaata acagagtcac cgcgtttttt atccatacca taagccagtg cagcagcggt
     3901 aggctcatta atgattcgtt ttacttccag gccagcaata cgaccagcat ctttggttgc
     3961 ctggcgttgc gaatcgttga aataggcagg tacagtaatc actgcttctt ttacttcttc
     4021 acccaaataa tcttctgctg tttttttcat ttttcttaac acttcagcag aaatttgtgg
     4081 tggtgcctta tcttgatctt tgactctaac ccaagcatcc ccattgtccg ctttcataat
     4141 tttgtaggga accatcttaa tatctttttg cacgatagga tcatcaaatc gacgcccaat
     4201 taatcgttta atcgcaaaca gcgttttctc tgggttagtc acggattgac gcttggctga
     4261 ttggcctacc aatatttcat tatcatcagt aaatgctacg atagaaggag ttgttctgtg
     4321 accttcacta ttttcaatta ccttcggttt gtcaccttcc atgacagcaa cacaagagtt
     4381 cgtagtaccc aggtctatac ctattatttt agccattcta ttttgctcca aattaatatt
     4441 ttctcatgca atattccaca tatggggtgc atcatgacga tttcaagcta tcaccctaaa
     4501 aaaagctgaa tacactgcat ctaaaaattt gtttaaaaat acctcaactg aaacaccaga
     4561 ttatttggtg gaaactatca cccgagctgg tcgaattact cgatcgctca atttgtaacc
     4621 tttttggaat acagtaatta cagaattcgg tggcgctcct ggggcaggtt gcattgacat
     4681 tgcctcatgt tgttgagggt caaatgtctg tccaagagga tcaatttgtt ccacatcaaa
     4741 cttctgtaat gcgtcaagaa agagtttcat agttaactca agtccttcat gcatagatgg
     4801 atcactgttc ttgtccgcta attgtaatgc ttgctcaaga ctgtccacta ctggcaataa
     4861 agctgaaatc agtttttcta cgccatattt atgagcattg gcaacttctc gttccatacg
     4921 acgacgaacg ttctccaatt cagcaagggc gcgtacagac ttttcccaat tttcatgtgc
     4981 tttttgttcc gccaatgtca gttgctcttc caaggcagta tagctgggat gtcctaaagc
     5041 aggttcttga tgttgtgatt cttcatcagt ttcttcttcc agaatctcat tctctacctt
     5101 gtgttcttct ttgtgttcgt ctttaaattt tttccaatct tttttatttt gtttactcat
     5161 caaaatcgct cctgactaac tcgattccta caaatgggga ttgtatttgc aattttcaag
     5221 cccctgttag gattttaaat cttggtttaa aattcaggtc attaactgat tgaaactttt
     5281 caaatcatgg cttgcagtaa ttgtccattt attccatact tagatagcta aaaaatctgt
     5341 cttaattctc atttaggtaa aaaaatcaaa gtatttaata atcctttgag ttaaattaag
     5401 tctaaacgac aactaaagca aaaataactt gggtaaatta tgcaagaatg gtcgccaact
     5461 acatggcaga aatattcgta tttgcaggca gcttcatacg ctgatgaaga gcaattaaat
     5521 aaagtggtag aacaattaag tttgctgccc ccattagtta ccagcggtga aatcaaacat
     5581 ttaaaaaatg aaattgccca ggctggccgg ggtaatgctt ttattctgca gggtggtgat
     5641 tgtgctgaat cttttaatga ctgtcgttca gaagttataa gtaacaaatt aaaaatcatt
     5701 cttcaaatga gcctaatctt attatatggc ttgcgtaaac caattattcg tatcggaaga
     5761 atagctgggc aatatgcaaa accacgctcc tcagattacg aaaccataaa tggagttact
     5821 ttacccagtt atcgtggaga tatcgttaat tcacctgaat ttactaccac tgccagggag
     5881 cctaatccta aattattact tcaggcatac agttgttctg ccatgacttt aaattttatc
     5941 cgagcgctgc tggatggcgg ttttgctgac ctgcatcatc ctcaacgctg ggatttaggt
     6001 tttgttgaac actcccctca gaagaacgaa taccaacata ttgtagactc tattgaagac
     6061 gccctggatt ttttgaatgc catagatgga atacgttcga gtagcataag taaagttgat
     6121 ttttacacct ctcatgaagc gttgcattta cattatgagc aagcattaac aagacagttg
     6181 aaagatggaa aatggtacaa tctttcaact catttaccct ggattggaat gcgtacggca
     6241 caaacggaca gtgcacatct tgagtttcta cgaggggtac aaaatccaat aggcattaag
     6301 ataggcccag cagctacacc tgaatggtta tcagaggtat taagcatagc caatccgcaa
     6361 aaagaagaag gacgagtttt actttatact cgcctgggag caaaacttat cgaccggttg
     6421 ttacctccac tgattgacac agtaaggaaa agcaaaattc cagtcacgtg gtcatgtgac
     6481 cctatgcatg gcaataccga aacaacagaa gacggtacta aaacacgtca cttcgataac
     6541 attttatcgg aattaaaaca agctttggaa attcatcgca gcatgggtag ctaccttgga
     6601 ggtgtccatt ttgagctaac tggtgacaat gtaacagagt gtatcggggg cgctcgtgga
     6661 ttagctcctc atgatctcaa aactgcctat cacagcctgg ttgatccaag attaaactat
     6721 gaacaatctc tggaaatggc catccaatta agccatcaat tcagaaatga atcttaatga
     6781 aattcatgac gtcttgaatg aaggccagta tctatgccaa aagctgatta tctgtaactg
     6841 ttcatgcaat ggcgtgtacg gttacgattg tctgattctt gaggcatttc actattttga
     6901 aacaataatt tttgcctcgc acaaactaca aatgatattg aggacttatc tcatgtaccg
     6961 cctcaatcat tattgcaaca ttctcagggg gtacatccgg agtaatgcca tggcccaaat
     7021 taaagatatg ccctgttcca taaccataag atgccagtac actcccaacc tcacttcgta
     7081 tacaattttt tgtagttagt aaaacagcag gatccagatt tccttgtaaa gcgacctttc
     7141 cgcctactct cttgcgcgcg gaagccaaat cacacgtcca gtcaactcct aatgcatcac
     7201 aaccagtttc tgccatccat tctaaccatt gcccaccatt cttggtaaat aaaattacag
     7261 ggatatcagg gtattctttt ttcaattgct gaacaatttg atgcatatat gccaaagaaa
     7321 aatccttata attttgtgga gttaaaactc ccccccacgt atcaaagatc ataaccgcat
     7381 taacccccgc ctttatttgc tcaattaaat aggcagtcac agagacagcc aatttattca
     7441 ataacaggtg cgctgcttct ttttcagtgt atattaaatt taaaattcgc ttaaaatctc
     7501 tactgctccc gccctcaacc atgtaacaag ctaaagtcca tgggctacca gaaaatccga
     7561 tcaaaggtaa ttctttaggc atttcctggc ggattaagcg cgcagcatca aagacatagg
     7621 ataaagattc aggaatggaa ggaattttca gggtatgaat tgccttggta tcttgtaaag
     7681 gatttgtgaa acgaggtcct tctccttcgg caaaatagag ccctagcccc atagcatcag
     7741 gtattgttaa aatatcggaa aataaaatag ctgcatccaa agcatagcga cgcaacggtt
     7801 gcaaggttac ttcacaggcg agttccggat tcttgcaaag atttaaaaaa tcaccggcat
     7861 gctctcttac ttttctatat tcaggcaaat aacgcccagc ctggcgcata atccagattg
     7921 gagttctctc cacaggttgt cttctcaaag ctcgaagaaa aagggattgg ttcaaatcaa
     7981 acatcattta atcactatca caataaaaag tgtttatagt atcatgttaa ggtaatcaat
     8041 acagtggtat aaatagcaat cgatacttaa caatataaac aggacacacg aaaaacccca
     8101 aggtcaaagc aaacaatgtt ttcatgagaa aatttagata aattaaatgg atgattttaa
     8161 aaattttaaa caaaa
//
LOCUS       DACVWI010000136         8171 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.136, whole genome shotgun sequence.
ACCESSION   DACVWI010000136 DACVWI010000000
VERSION     DACVWI010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8171
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.136"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            7..978
                     /locus_tag="JBH85_10950"
     CDS             7..978
                     /locus_tag="JBH85_10950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HAU0946720.1"
                     /translation="MHYIQINNPGPHSELTLVEGPNPGFNESQILVRVKATALNRADL
                     MQKYGKYPPPPGESDIPGLEVAGEVIVTGSKVKQFKPGDKIYGLVGSGGYAEICPVDA
                     SLAHHIPSHWNYSLAAALPEALTTVYATLYDLGALSAGQTLLIHGAGSGIASLAIQMA
                     KLTNTKVITTVGDSSKIEKALALGADQVIHYKEQDFELLIEDNSVDLIIDFVGGDYFN
                     KHLHLLKPQGKLIQIACLKGSKVECSLALLMQKRLHIIGFVLRSQSIKEKARLWKLAH
                     DHWFNAFENDKIKPVIDSELDLNQIETALQRMQQGSHFGKIVIRVGK"
     gene            complement(1152..2435)
                     /gene="clcA"
                     /locus_tag="JBH85_10955"
     CDS             complement(1152..2435)
                     /gene="clcA"
                     /locus_tag="JBH85_10955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HAU0946721.1"
                     /translation="MGKKILILYFVSVLLGILTGAIASLFQLTIQQMDHLLELLFHIT
                     ESYGLPVGIVSAMISMMMLFIAWMMVKYIAPEAAGSGVQEIEGTLLHVRPIFWKRLIP
                     VKFFGGVLSISAKMVMGREGPTIQMGGNLGQMLGELFQLTRRRRDTLIAAGSAAGLAA
                     AFNAPLAGVLFVMEEMRNQFNYSFTNFKMVVICCVMATIVLHLIIGSQPAIQMEVFEL
                     PTLGSLWLFFVFGILMGLAGLLFNVTLMRTVGWLDKQNPKNKKYYILAVGFLVGYLAY
                     SYPATVGGGYVIISEALTMSPAFSVLCSLIVIRFIMTMLSYSSGVPGGIFAPMLALGT
                     LFGLGFFHLFQWLSMDFSIEPGMFAVAGMGALFAAAVRSPITGVVLVVEMTKNYSLIL
                     PLMISCITATIVVQLARNEPIYTQLLERTLRLNAK"
     gene            complement(2428..4584)
                     /locus_tag="JBH85_10960"
     CDS             complement(2428..4584)
                     /locus_tag="JBH85_10960"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HAU0946722.1"
                     /translation="MVFMLQQYKTLGGVHVEFSQQELDYQQGIDFLLESLDSQRGAVF
                     ASSFEYPGRYTCWDMGFYNPPLVIICQSNTICFEALNQRGEILLSFLYPLLKTTDLWE
                     VISQTTSFCQLKIKSSDKVFSEEERSHQPSVFSTIRLLLNFFKTDEDSYLGLYGAFGF
                     DLIYQFEQLERCKSRNETQRDMVLYLPDEIYIVNHRKEEAFVRRYDFQYQGRSTQSLS
                     REGKYSPYQPIHKPEKNCDHEPGEYAQVVKKAKEKFSCGDLFEVVPSQTFYTHFAEKP
                     SILFRQMREINPSPYGFFVNLGDEEYLVGASPEMYVRVQGKRVETCPISGTIKRGADA
                     IEDAHNIQTLLDSEKEESELTMCTDVDRNDKSRICEAGSVKVIGRRQIEMYSRLIHTV
                     DHVEGVLRDGFDAVDAFLTHMWVVTVTGAPKIWAMNFIEQHEKSPRKWYAGAVGWFGF
                     DGNLNTGLVLRTVRIEKGTAEIRVGATLLYDSIPEAEEEETRLKASAFLDILQKPWQK
                     AKKKIENIPLVGENKKVLLIDHQDSFVHTLANYLRQTGAAVTTVRYDKAIGYLQNNHF
                     DLIVLSPGPGKPVDFKLSETIDMILSKNIPIFGVCLGLQGIVEYFGGVLDVLEYPMHG
                     KSSVIRVLDNKGLFSGLGDCFKAGRYHSLYARAETLPSELLVTAVSEDDVIMAVSHEH
                     LPVHAVQFHPETILSLSDQVGLRIITNLMNMVKDNG"
     gene            4843..5145
                     /gene="gatC"
                     /locus_tag="JBH85_10965"
     CDS             4843..5145
                     /gene="gatC"
                     /locus_tag="JBH85_10965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HAU0946723.1"
                     /translation="MTMTLSAKDLENISKLAYLNEDSEHSAKLTQEVSAIMDFVDQLK
                     TIDTSQIAPLFHPLALNQRLRPDEVTEAECLAELEAMAPLFEDNLYLVPKVISSDK"
     gene            5148..6599
                     /gene="gatA"
                     /locus_tag="JBH85_10970"
     CDS             5148..6599
                     /gene="gatA"
                     /locus_tag="JBH85_10970"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HAU0946724.1"
                     /translation="MEHYSLAQLSKALHNREFSSVELTQHCINKIQSNKDLNAFISLD
                     EDQALKEAQSADLVLKSGEGKPLTGIPMALKDLFCTKRLNTTCASKMLANFQAPYDAT
                     IVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVSGGSSGGSAAAVAG
                     NLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAED
                     LAMILHCMAGFDSKDSTSVDRVIPDYSAEIKNPVDKIRIGLPSCFFQPQVEKGIQDAI
                     HDAVKLFENLGAEIIEIDLKLQPLWVPCYYVIACAEASSNLSRYDGIRFGHRSKSAST
                     LIELITNSRSEGFGNEVKRRILTGTHVLSSGFFDAYYLHAQKVRRLIRDELITTLNSV
                     DVILGPTTPTTAFKLGEKIDDPIQNYLADVFTVAANLAGLPAVSIPTGFENKLPIGLQ
                     LMSKHFSENRLLAIAHHYQQHTNWHLANPNKQR"
     gene            6603..8036
                     /gene="gatB"
                     /locus_tag="JBH85_10975"
     CDS             6603..8036
                     /gene="gatB"
                     /locus_tag="JBH85_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HAU0946725.1"
                     /translation="MEWDTVIGLEVHAQLKTKSKLFSGASTAFGATPNSQTSFIDAGL
                     PGVLPVLNEQAIIMAIQFGLAIHGTINDLSVFERKNYFYPDLPKGYQISQYQKPIVTN
                     GYLNIQLGNNLEKTVHIARAHLEEDAGKSLHDAHTDYTGIDLNRAGTPLLEIVTTPCL
                     YSAEEAINYLKTLHQLVRFLGICDGNMQEGSFRCDVNLSIKPKGSSVLGTRTELKNLN
                     SFRFIEKAIAFEQARHQDILESGLSVIQETRLYNPDNNTTQAMRGKENENDYRYFPDP
                     DLLPIHIDKEQVEEIKNNLPDLPEAISKELKNTPSLNDEDINFILSSPDTYQYYKKIK
                     SLCPAADKTIINWLKGQYAAFLNEHNLTFETPPISAKTMAAFLSKIHEKKISSSIAKN
                     IFSMLCTGEKDIDAIIEREGYQQQNDNSALEEIVEQIIKQYPEQVTEYKAGKEKLLAF
                     FIGQAMKQTKGKANPEQINLLLKKHLG"
BASE COUNT         2659 a         1694 c         1442 g         2376 t
ORIGIN      
        1 cttatcttgc attacataca gattaataat ccaggacctc atagtgaatt aacccttgtc
       61 gaaggtccaa atcctggttt taatgaatct caaattcttg tgcgtgtcaa agccacagcc
      121 ttgaatagag ctgatttgat gcaaaaatat ggtaaatatc cccctcctcc aggagaatcc
      181 gatatacctg gactagaagt agctggagaa gtaatcgtca ctggttccaa ggtaaaacaa
      241 tttaaaccgg gtgataaaat ttacggtctt gtcgggagtg gaggttatgc tgaaatctgt
      301 ccagtagacg cttctttagc tcatcatatt ccttctcatt ggaattattc attggctgca
      361 gcgctcccgg aagcattaac gacagtctat gctacattgt acgatttagg tgccttaagt
      421 gctggacaaa cattattgat ccatggcgct ggaagcggaa tagcttcatt agccatacaa
      481 atggctaaat taacaaacac taaagtgata accacagtcg gtgattccag taaaatagaa
      541 aaggctcttg ccctgggcgc cgatcaagtc attcattaca aagaacaaga ttttgaatta
      601 ttaattgagg acaattctgt tgatttgatc atcgattttg tcggtggtga ttattttaac
      661 aaacacttac atttactgaa gcctcagggt aaattaatcc aaattgcttg cctcaaagga
      721 agcaaagtag aatgcagtct ggctttgctt atgcaaaaaa ggttgcacat cattggattt
      781 gtactcagat cgcaaagcat caaagaaaaa gcaaggcttt ggaaattggc tcatgatcat
      841 tggtttaatg catttgaaaa tgacaagata aaaccagtaa ttgactcgga acttgatcta
      901 aatcaaatag aaacagcgct gcaacgtatg caacaaggtt ctcatttcgg aaaaatagtc
      961 attcgcgtag gtaagtaatg ctatgcctca tcaatttctc atgagctcaa tattatatgc
     1021 acagactctt ccaaagctgc cttggcaatg tccagtgagt tcgtgttttt ggtagataaa
     1081 tcaagagctc ttcttacttt tatccttatt ccccatagct gaactatcaa tacatattga
     1141 gatatttaga ctcattttgc attgagccgt aaagttcgct ctaacaattg agtgtaaatc
     1201 ggctcattac gtgctaattg caccacaatc gttgcagtaa tgcaggagat cataaggggt
     1261 agaattagag agtaattttt tgtcatttca acaaccaata ccacaccagt aattggtgat
     1321 cttactgcag ctgcgaaaag cgctcccata cctgcaactg caaacatacc aggttcaatt
     1381 gaaaaatcca tactcaacca ttgaaataaa tggaaaaaac ctaatccaaa tagtgttccc
     1441 aaagccagca ttggtgcaaa gataccgcca ggtacgccac ttgaatagga taacatggtc
     1501 atgataaacc tgattacaat aagactgcat aacacgctaa atgcaggtga catagtcagt
     1561 gcttcactga tgataacata accaccccca acagtagcag gataggagta cgccagataa
     1621 ccgactaaaa atccaacagc taaaatataa tattttttgt ttttgggatt ttgtttatcc
     1681 aaccatccaa cagttctcat gagtgtgaca ttgaataata aaccagccaa ccccattaat
     1741 attccaaaaa caaagaacag ccacaaagag cccagtgtag gtagttcaaa aacctccatt
     1801 tgaatagccg gttgtgagcc aataataaga tgcaaaacaa tcgttgccat aacacaacaa
     1861 ataacgacca ttttaaaatt ggtaaatgaa taattaaact ggttacgcat ttcctccatg
     1921 acaaacagta caccagccag aggcgcatta aatgctgcag ccaaaccagc ggcagaacca
     1981 gcggctatta aagtatcacg gcgacggcgt gtaagttgaa acaactctcc aagcatctgt
     2041 ccaaggttac cgcccatctg aatagtaggc ccttctcttc ccataaccat ttttgccgat
     2101 atggataaca cacccccaaa aaattttact ggtatcagac gtttccaaaa tattggtctc
     2161 acatgaagca aggtgccttc aatttcttgc acaccacttc ctgctgcttc tggggcgatg
     2221 tacttcacca tcatccaggc aataaataac atcatcattg atatcatagc agaaacgatt
     2281 cctacaggaa gtccataact ttctgtgata tgaaataata gctccagcag atgatccatc
     2341 tgttgaatag taagttggaa taatgaagca attgcgcctg ttaatatccc taatagaact
     2401 gatacaaaat ataaaatcag tattttttta cccattgtcc ttcaccatat tcatcaaatt
     2461 ggtgattatt cttaaaccca cttgatccga taaagacaaa attgtctctg gatgaaattg
     2521 aaccgcatgc acaggtaaat gctcatgaga aactgccata atcacatcat cttcacttac
     2581 agcggtaact aataattcac tgggtaaggt ctctgctctg gcatagagtg aatggtatct
     2641 tcccgcttta aaacaatcgc ctaaaccgga gaacaacccc ttgttatcta ataccctaat
     2701 tactgaagat tttccatgca tagggtattc aagaacatcc aaaacccctc caaaatactc
     2761 aacaattcct tgcagcccca gacaaacacc gaatattggt atgttctttg agagtatcat
     2821 atcaattgtt tctgaaagct taaaatcaac cggttttcca gggccaggtg ataatacgat
     2881 caaatcaaaa tgattatttt gtaaatagcc aatcgccttg tcatagcgaa ctgttgtaac
     2941 cgcagctccc gtttgcctta aatagtttgc caaagtatga acaaaggaat cttgatgatc
     3001 gataagtaaa acttttttat tttcccctac cagggggata ttctctatct tcttttttgc
     3061 cttttgccat ggtttttgta aaatgtctaa aaatgcagaa gcctttaatc tcgtctcctc
     3121 ttcctcagct tcaggaatag agtcataaag taacgttgcg cctactctaa tttctgcagt
     3181 tcccttttct attcgcactg ttcttaagac caatccagta tttaaatttc catcaaaacc
     3241 aaaccatcct acggctcctg cataccattt gcgcggggat ttctcatgtt gttcaatgaa
     3301 attcatagcc caaattttag gcgcaccagt cacagtaaca acccacatat gagttaaaaa
     3361 agcatctact gcatcaaatc catctcttaa aacaccctca acatgatcaa ctgtatgaat
     3421 caatcgagaa tacatttcaa tttggcgacg cccaatgact ttcacactcc ctgcttcgca
     3481 tattcttgac ttatcatttc tatccacatc ggtacacatg gttagttctg attcttcttt
     3541 ctctgaatct agaagtgtct gaatattgtg agcatcctca atagcatctg ctccccgttt
     3601 gatagtgcct gagatagggc aagtttctac tcttttacct tggacacgaa catacatttc
     3661 aggtgaagca cctaccagat attcttcgtc acccaaatta acaaaaaatc catatggcga
     3721 tggatttatt tctcgcattt ggcgaaataa aattgacggc ttttcagcaa agtgagtata
     3781 gaaagtttgg ctaggaacca cttcaaataa atcaccacag gaaaattttt ctttagcttt
     3841 tttgaccact tgggcatatt cacctggctc gtgatcacag tttttttccg gtttatggat
     3901 aggttgatat ggtgaatact ttccttctct ggataaagat tgagttgatc gcccctgata
     3961 ttgaaaatca tatcgtctaa caaaggcttc ttccttacga tgatttacta tataaatttc
     4021 atcaggtaga tagaggacca tatctctctg tgtttcattt cttgatttac accgctccaa
     4081 ctgttcaaat tgataaatca ggtcaaaccc aaaagcacca tataaaccca agtatgaatc
     4141 ttcatctgtt ttaaaaaaat tcaataagag gcgaattgta ctgaatactg acggttgatg
     4201 gctccgctcc tcctcactaa atactttgtc tgatgattta atttttaact gacaaaatga
     4261 ggtcgtttgg ctaattacct cccagagatc tgttgttttt aataacggat agagaaaaga
     4321 taataatatc tcgcctcgtt gatttaatgc ctcaaagcag atggtattac tttggcagat
     4381 gataactaat gggggattat aaaaacccat gtcccaacaa gtatagcgtc ctggatattc
     4441 aaagctcgaa gcaaatactg ccccacgttg agaatcaagg ctctcaagca aaaaatctat
     4501 gccttgttga taatccaact cttgttgaga aaactcaaca tgaacaccac cgagagtttt
     4561 atattgctgt aacatgaata ccattctcta tcatttaatt cgtacaaata ttcattctac
     4621 tgtaaaacca ctgttctgca agaatcttgt aacatttcaa tatcattgct tttttatgtc
     4681 ttcagaagag attgcaaaac ttgcttcaaa aaagacatga ctgcagtcat gattaaacat
     4741 ggctctagga aagcaacttg gctcaacaga ctaaaagata attaaactaa tacttcattt
     4801 ttagaacaat accgctataa tgtataaccc ttatatttgg atatgaccat gactctctct
     4861 gctaaagatc ttgaaaatat ttcaaaattg gcttatttaa atgaagactc tgagcattct
     4921 gcaaaattga ctcaagaagt aagtgcgatc atggattttg ttgaccagct caaaacaata
     4981 gatacaagcc aaatagcacc tctttttcat cctttggcac taaatcaacg cttaagacca
     5041 gatgaagtaa ctgaagcgga atgtcttgct gaattagaag ccatggcgcc attatttgag
     5101 gataacttat atttggttcc caaggtgata tcatcggata aataataatg gaacattact
     5161 cactggctca attatcaaag gctcttcata atcgagaatt ttcaagtgtt gaattaacac
     5221 aacactgtat taacaaaatt caaagcaata aagacttgaa tgcattcatc agccttgatg
     5281 aagaccaggc tcttaaagaa gcgcaatcgg ctgatttggt actaaaaagt ggggagggaa
     5341 agccactgac tggtatcccc atggctctca aggatttgtt ttgtacaaag cgattaaata
     5401 caacttgtgc ttcaaaaatg ctggctaatt ttcaagcccc atatgatgcc actatcgtca
     5461 caaaatttaa acaaaatggc gcaattatta ttggaaaaac caatatggat gagtttgcca
     5521 tgggatcctc taatgaaaac agttacttcg gttcggtaaa aaacccgtgg gatagagaaa
     5581 gagtgtcagg tggatcatca ggcggttctg cagcagcggt tgctggaaat ctggtacctt
     5641 ttgcaattgg ctctgacacc ggtggatcaa ttcgtcagcc agcagccttt tgcgggatta
     5701 gcgggataaa acccacctat ggattagtct ctcgatacgg aatggtcgcc tttgcctcaa
     5761 gccttgatca agcgggacca tttgcgaaat cagctgaaga tctggccatg atacttcact
     5821 gtatggcggg gtttgatagt aaagattcca cgtcagttga tagagttata cctgattatt
     5881 cagcagaaat taaaaaccca gtagacaaaa tacgcatagg acttccttct tgcttttttc
     5941 aacctcaagt cgaaaaaggt atccaggatg ccatacatga tgctgtgaaa ttatttgaga
     6001 atctaggggc tgaaataatt gaaatcgact tgaaacttca gccactttgg gtgccatgtt
     6061 actatgttat agcttgcgca gaagcttcat caaatctttc gcgttatgat ggcataagat
     6121 ttggccaccg aagcaaatcc gcatcaacct taattgaatt aatcactaac tctcgaagtg
     6181 aaggttttgg taacgaggta aaacgtcgaa ttctaactgg aactcatgtg ctctcatccg
     6241 gtttttttga tgcctattat ttgcatgcac aaaaagtgag gcgtttgatt cgagatgaat
     6301 taattacaac tttaaattca gtagatgtta tccttgggcc aacaactcct accaccgctt
     6361 ttaaattggg tgaaaaaata gatgatccca tacaaaatta tttggcagat gtatttactg
     6421 tagcagccaa tcttgcaggc ctaccagctg tttctatacc aactggtttt gaaaataaac
     6481 taccaattgg tttgcaatta atgagcaagc actttagtga aaaccgcttg cttgcaatcg
     6541 cacatcatta tcagcaacac accaactggc atttagccaa tcctaacaag caaaggtgat
     6601 atatggaatg ggataccgtc attggtcttg aggtacatgc tcaattaaaa accaaatcaa
     6661 aattattttc aggagcatct actgcttttg gtgccacccc taactcgcaa acgagtttta
     6721 tcgatgctgg tttgcctggt gttctccctg tgttaaatga acaagccatc ataatggcta
     6781 tccaatttgg tttggcaatt catggaacca ttaatgattt gtctgttttt gaacgcaaaa
     6841 attattttta tcctgactta cccaaaggct atcaaatcag tcagtatcaa aaacccattg
     6901 ttactaatgg ctatttaaat atacagcttg gtaataacct ggaaaaaaca gtccatattg
     6961 cacgcgctca tttagaagaa gatgctggca aatccctaca cgatgcccat actgattaca
     7021 ccgggatcga cctcaacaga gcaggtaccc cactattgga aatagtcaca accccttgcc
     7081 tgtactcggc tgaagaggcg attaattatt taaaaacgct gcatcaatta gtgagattcc
     7141 ttggaatatg cgatggcaat atgcaagaag gttcttttcg gtgtgacgtc aatctgtcta
     7201 taaaacctaa aggcagctca gttttaggca cacgaacaga acttaaaaat ctgaattcat
     7261 ttcgttttat tgaaaaagcc attgcttttg aacaggcaag acaccaagat atattggaaa
     7321 gcggtctgtc agtcatccag gagactcgcc tttacaatcc tgacaataac acaactcagg
     7381 cgatgagagg caaggaaaat gaaaatgatt accgttattt tcctgatcct gatttattac
     7441 caattcatat tgacaaagaa caagttgaag agattaaaaa taacctgccg gacttgcctg
     7501 aagcaatttc caaagaatta aaaaacactc cgtccctaaa tgatgaagac attaatttca
     7561 tattatcatc accggacact tatcaatatt acaaaaaaat taaatccctt tgtccggctg
     7621 ctgataaaac aattatcaac tggttaaaag gccaatatgc cgcctttctt aatgaacaca
     7681 acctaacctt tgaaacacca ccaatttcag ctaaaaccat ggctgctttt cttagcaaaa
     7741 ttcatgagaa aaaaatctct tctagtattg ctaaaaatat tttcagtatg ctttgcacag
     7801 gtgaaaaaga tatcgatgcg attattgaac gcgaaggcta ccagcaacag aatgacaact
     7861 cggcactgga agaaatagtt gagcaaataa tcaaacaata tcccgaacaa gttacagaat
     7921 acaaagccgg taaagagaaa ttattagctt tttttatcgg gcaagcgatg aaacaaacta
     7981 aagggaaagc aaatcccgag caaatcaatc tgttattaaa aaaacatctt ggatgatgca
     8041 atatttttat aattcacaat gctcatttat ggccttgttg attgattgcc agctattatc
     8101 atctttttgt cagaaggtat aatgcaagca ttcaattata ataaccaatt ttcatataga
     8161 attaattgca t
//
LOCUS       DACVWI010000137         8047 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.137, whole genome shotgun sequence.
ACCESSION   DACVWI010000137 DACVWI010000000
VERSION     DACVWI010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8047
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.137"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1257
                     /locus_tag="JBH85_10980"
     CDS             <1..1257
                     /locus_tag="JBH85_10980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal region-containing protein"
                     /protein_id="HAU0946726.1"
                     /translation="TPLLKGHFVFSEINIDGLKLFINQENNEKPLSSERNANQYNTTT
                     YPNEQFAIQKLLLSHGQIILNNKGQSTVLKNIQIRAEQFNLKNSPFSVQIKAKLTDAA
                     FLQTAKANINFKGRVSLSPSIIDELNSGISKSSIEGQLQIQNILLNQFAIKKINTTLK
                     THKRDIQFNPLTFSLYHGESIGDMDYVIATQQLLINQTATNLDGKQLITSLLKHPAIS
                     GNLDYSIHASIPLKALSIESLVSKGTITLKDGEVYNINLDQLLNNLKVKLNSLMTETP
                     DNIKKLTQSADWDQNKNMQGNTKFKLANFKFQLQTGAISSDSFLLQTDKLQVNGEGRI
                     NLLNQEINSNIKATLNDNSTDNTLQKIQQALGGYFPLVVSGTVENPIVLPDFKAISPV
                     LSSLAIKSALTKPLKIIQKPLKELIH"
     gene            1254..2321
                     /gene="mutY"
                     /locus_tag="JBH85_10985"
     CDS             1254..2321
                     /gene="mutY"
                     /locus_tag="JBH85_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HAU0946727.1"
                     /translation="MSTNSLNQLFSQLLLDWYDLHGRKDLPWQLPRSPYRVWVSEIML
                     QQTQVQTVIPYFNRFIEHFPDIFLLANAEEDEVLSLWSGLGYYSRARNLHNTAKIISD
                     QYNGVFPEDLNILVQLPGIGPSTAAAILSQAFNKPAAILDGNVKRVLSRFFLIEGWPE
                     QAQVKKKLWGLASSCMPNERCADYTQAIMDLGATCCTNKNPQCLRCPVKNHCLAFHNK
                     KQHLYPTKKIKKQRPILSQQFLVLHNGQNQVYLEKRPPSGLWGGLWCLPSINNQTCPI
                     EHIQLLYKLQGDSPKLITRFKHSFSHFHLEITALSIRIESMNNFISESRGQWFTKETL
                     PTLGLAKPTTLILSKLMETGA"
     gene            2530..3261
                     /gene="ceg18"
                     /locus_tag="JBH85_10990"
     CDS             2530..3261
                     /gene="ceg18"
                     /locus_tag="JBH85_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg18"
                     /protein_id="HAU0946728.1"
                     /translation="MHLTREVNIMSILSAVSRVINNFSTEIKNRVVEVGSNLKKSTEE
                     FIGEVVIKAAVNRLKQGMLNALSSSNDTTKDNGNDLSTNSPDIEDVSAPTLSSKKKTE
                     ANTTLAGSTGIMQKLLGNIGVNSEQSIEVLSKHFNGAVERFTQDVSKAANEAVCEKIK
                     SIQPEDVVKGINSLIGNTLKVDSESGDTTLSFKLESAVQILGVILAAMGMLMFASQTK
                     STEQKTLEIEHLPTEEIQPPSLAIH"
     gene            3534..4493
                     /locus_tag="JBH85_10995"
     CDS             3534..4493
                     /locus_tag="JBH85_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HAU0946729.1"
                     /translation="MNPILNLIISFIALLWAANHLVAGASGLAIRFQLSPLMIGLTIV
                     ALGTSAPELFISIISSLKDKNDLAIGNAIGSNIANIGLILGILILIKPTSFHFNKLKK
                     VYPILIIVMLFAYSLILDGYLGTIDGCLFLIGCIAVLCYFIYLANHSPKRDLSVNEFR
                     PAILSYRSTPSNLLSIAIGLLILPICSKYLVYNASEIAKWAGISEFTIGLTIIAIGTS
                     LPELTTALVAAIKGEDSIAIGTIIGSNIYNLLLILALPGLLNPTKISSVVLWRDMPVM
                     LSITLLLLFLNYYYQKKTSSWPGGILLLVYFCYMASLIINAHS"
     gene            complement(4572..4949)
                     /locus_tag="JBH85_11000"
     CDS             complement(4572..4949)
                     /locus_tag="JBH85_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HAU0946730.1"
                     /translation="MQRIFKLFILIIFIPMMAACIHSTLNLREGIQCFKAQDYRKAFI
                     RLKPEAEKGNPDAQYAVGYMYYYGKGVVEDRKKARFWITCAARAGQPDAIVALGVLDR
                     QARRDRELFQDNNLQHFPVDNGL"
     gene            complement(4955..5464)
                     /locus_tag="JBH85_11005"
     CDS             complement(4955..5464)
                     /locus_tag="JBH85_11005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general secretion pathway protein GspC"
                     /protein_id="HAU0946731.1"
                     /translation="MKFDIQFLFSANYAKWIIISLISLFGILIIFEWISLFYPLTYVR
                     AIPVSNTKSIAGMREENLNYIFNTSLFGVYVPADLNEDNVKQSMLNVTLVGILFADKI
                     EESQVIIRSASGEEKTYNVGDKIPGGATIKRIMPGGVLVERDGTLESLSLPKNDLTFE
                     PVAKPLKEE"
     gene            complement(5815..7185)
                     /locus_tag="JBH85_11010"
     CDS             complement(5815..7185)
                     /locus_tag="JBH85_11010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HAU0946732.1"
                     /translation="MSQNQWSLEKIKQYKEDTGQALLSDEQSLVLFGQDFGKLIQSQP
                     VAVSAPQSIESLQSLILFSNQYHLPVTIRGNGLSQGGQSLPVPGGLTISMQSFNKTLD
                     LSEDLIWVEANTSWKNLLEKSLVNNKAPYVLPYNCNLSVGGVLSAGGIGASSFKYGVI
                     NAYVSALEVVDGLGRKQIVEKNSPLFQACLSGQGRFGVITKACIQLRSVQPRVKTYSL
                     VYADQNQWFEDIYKIQGKVDYMEIFCSPSIQGARLKEDKRVPMAYWLYGLHLSVEYDR
                     HAENILGQLKPWNVLNIQEESILSYFLRHNSRFDMMKLTGQWDLLHPWYECFVPTSFL
                     TGVLSQLLEELPLHYASLVHVVPIAKQKAGFMMLPDCDSICEFMILNPGVPYSLEKSC
                     LKAIEDLDKHLLQNNGKRYLSGFLGTELPDNYWLKHFGEKYDSWVGLKKQYDPAGIFS
                     SILHHI"
     gene            complement(7142..7906)
                     /locus_tag="JBH85_11015"
     CDS             complement(7142..7906)
                     /locus_tag="JBH85_11015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946733.1"
                     /translation="MESVMKTVQAYIDSKQHEFMNHPFFNILEELNSIEEISYFVPEL
                     TFWAMTFQDILRINEERVTDPYLKKVARHHRLEDAGHEKWFLSDKKYMGEICDNKACD
                     RDDVAWLYSKDSQLVRDAAYSIMSEIYKIEDENLNIVLLLTLESSGHVFFEKVVKQVK
                     KTGEDKNLKYFSSSHLEVELAHALFEEEMERKVYSRRLPISTRREALRMVDRCYDAFS
                     KMFDGLILACNKRLELAKERNQHVAKSVELRENQAV"
BASE COUNT         2671 a         1581 c         1283 g         2512 t
ORIGIN      
        1 actcctttgt tgaaaggaca ttttgtattt agtgaaatta acattgatgg cctaaaatta
       61 tttatcaatc aagaaaataa tgaaaagcct ctctcttctg aaagaaacgc taatcaatac
      121 aacaccacaa cgtaccccaa tgagcaattt gccattcaaa aattattatt aagccatgga
      181 caaattatcc ttaacaataa ggggcaatct actgtcttaa aaaatattca aatcagagca
      241 gagcaattta atttaaaaaa ctcgcccttt tcagtacaga ttaaagccaa gctgactgat
      301 gctgcttttt tacagacagc caaagctaat attaatttta aaggtcgagt tagtctatca
      361 ccctcaatta ttgatgaact caattcagga attagtaagt cttccataga aggccaactg
      421 caaatacaaa atattttatt gaatcaattc gctatcaaaa aaatcaatac cactcttaaa
      481 actcataaaa gagatatcca atttaatcca cttactttct cactctatca tggggaatcg
      541 ataggagata tggactatgt catcgctaca caacaattgt taattaatca aactgcaacc
      601 aatttagatg gaaagcaatt aatcacttct ttattaaaac atcctgcaat tagcggtaat
      661 ttagattact caattcatgc ctcaatacca ttgaaagcac ttagtattga aagtcttgtt
      721 agtaaaggaa ccattacgct taaagatgga gaagtctata atattaatct tgatcaatta
      781 cttaataatc taaaagtcaa acttaattcg cttatgactg aaacgccaga taacataaaa
      841 aaactgactc aatcagcaga ttgggatcaa aataaaaaca tgcaaggcaa taccaaattt
      901 aaattagcaa attttaaatt ccagttacaa accggagcaa ttagcagtga ttcatttttg
      961 ctgcagactg acaaactcca ggtgaatgga gaagggagaa ttaatctgct aaatcaagaa
     1021 ataaactcca atattaaggc cacgttaaac gacaatagta cagacaatac tttgcaaaaa
     1081 attcaacaag cattgggcgg ctatttccca ctggtagtat ctggcacagt tgaaaatccc
     1141 atagttttgc cagattttaa agcaattagc cctgtattaa gttcgttagc gatcaaatcg
     1201 gctctgacaa aacctttaaa aataatacaa aaaccactta aagagctaat ccattgagta
     1261 caaactcttt aaatcaactt ttcagtcaat tactgcttga ttggtatgac ctgcatggac
     1321 gcaaagattt gccatggcaa ttaccccgct ctccctacag agtttgggta tcagaaatca
     1381 tgttacaaca aactcaagtt caaactgtaa ttccctactt taatcgtttt atagaacatt
     1441 tccctgatat ttttttgctt gctaatgcag aagaggatga agtgctctct ctatggtcgg
     1501 gattaggcta ttacagtcgc gccagaaatc tgcacaacac agcaaaaata attagtgacc
     1561 agtataatgg cgtatttcct gaagatctga acattttagt tcaactgcca ggaataggac
     1621 catcgacagc agcagcgata ctttcacaag cttttaataa accagctgct attttagatg
     1681 ggaatgtgaa acgagttttg tctcgatttt ttttaatcga aggttggcca gaacaagctc
     1741 aggttaaaaa aaaactatgg gggcttgcgt cttcttgtat gcccaatgaa cgatgtgcgg
     1801 attatacaca agcaattatg gacttaggtg caacatgctg cacaaataaa aatcctcagt
     1861 gtttgcgttg tcctgttaaa aatcattgcc tggcctttca taataaaaag caacatcttt
     1921 atccaacaaa aaaaataaag aaacagcgcc caatattatc ccaacagttc ctggtgttgc
     1981 ataatggaca aaatcaggtt tatctggaaa aaagacctcc ttcagggtta tggggaggct
     2041 tatggtgttt acccagtata aataatcaaa cttgtccaat tgagcatatc caactccttt
     2101 acaagttgca aggagatagc ccaaagctaa ttacgcggtt taaacacagc ttcagccatt
     2161 ttcatttgga aataacagca ttgagcataa gaatagagtc tatgaataat tttatctctg
     2221 aatccagagg acaatggttt acaaaagaaa ccttgccaac attaggcctt gccaaaccaa
     2281 ccaccttgat actatccaaa ttaatggaga ctggcgccta aagaaccatt ttaaaaccac
     2341 caaaaggtgt ataaacggtt aagtccgcat aagccgatat caatctaaca aaatctttac
     2401 aaataattta tttattcatt atttaataaa taatgaacaa ttacttttaa tttacatttt
     2461 tttgtaaaga aatgtttcaa tcttaacaat tccttaatgt tcacttaatg ttctcttctt
     2521 attatttatt tgcacttaac aagagaggta aacattatgt caatattatc tgctgtttcg
     2581 cgtgtcataa ataatttttc aactgaaatt aaaaatagag ttgttgaagt ggggagtaat
     2641 ttaaagaagt caacagaaga gtttattggc gaagtagtca taaaagcggc tgttaatcgt
     2701 ttgaaacaag gaatgttgaa cgctttgtct tcttccaatg acaccaccaa agataatggt
     2761 aatgatttat ccacaaacag ccctgacatt gaagatgtat ctgcccccac gctaagctca
     2821 aagaaaaaaa cagaggcaaa taccactctg gctggcagta ctggtataat gcaaaaactg
     2881 ttgggcaata ttggcgtaaa ttctgaacaa agtatagaag tgttgtctaa gcattttaat
     2941 ggtgctgttg agcgttttac tcaagatgtt tcaaaggctg caaatgaggc tgtgtgtgaa
     3001 aagatcaaaa gtatacagcc tgaagatgtg gtaaagggta ttaacagtct aatcggcaat
     3061 actctcaaag tagactcaga gtccggtgac actaccctat cattcaagct tgagagtgct
     3121 gtacaaatcc tgggcgtcat tcttgcagcc atgggtatgc taatgtttgc atctcaaact
     3181 aaatcaaccg agcagaaaac tctagagata gaacatctgc caactgaaga aattcaacca
     3241 ccttcattgg ctattcatta agaaatactc acgacttgtt cttccaggct acgtactgca
     3301 aatcattctt ggtatgtagc ttgaagaatt ggcaacacat tcataaactc cttaattaca
     3361 agatttgatt acagaacttg ccgtgcttca tgatatacaa gcatttttta attaacatga
     3421 tgattacatg agctcctggc aaaacctgaa tataaagtga cacttaatat ccataagtta
     3481 tatcctataa accattctcg tattattatc actaaaaaat atcgagtata aaaatgaacc
     3541 ctattctgaa tttgattatc agttttattg cccttctttg ggctgccaat catttggttg
     3601 ctggtgcctc agggctggca attcgttttc aattatcacc ccttatgatt ggtttaacta
     3661 ttgttgcatt gggtaccagc gctcccgaat tatttatctc tatcatttct tccttaaaag
     3721 ataaaaatga tctggcaatt ggaaatgcga ttggttcaaa catagcaaat attggcttaa
     3781 ttttagggat tttaatcctt atcaaaccaa catcttttca tttcaataaa ctaaaaaaag
     3841 tatacccaat attgataatt gtcatgctgt ttgcgtacag cttaatactt gacggttatt
     3901 tgggtacaat cgatggttgc ctttttttga tcggatgtat agcagtactc tgttatttca
     3961 tttatttagc taatcactcg cctaaaagag atttatcagt taatgaattt agacccgcga
     4021 tactatccta tcgttcaaca ccctctaatt tattgagtat cgcaataggt ttattgattc
     4081 tgcctatttg ttcaaaatac ctggtttata atgcatctga aattgcaaaa tgggctggta
     4141 taagtgaatt caccattggc ttgaccatta ttgctatagg tacctccttg ccagaactta
     4201 caacggctct tgttgccgct atcaaaggag aagattctat agcgattggt acgataattg
     4261 gctcaaatat ttataacctg ttgttaattt tagctctacc gggattacta aacccaacta
     4321 aaattagcag cgtggtatta tggcgtgata tgccagtgat gctttccatt accttacttt
     4381 tattgttttt aaattactat tatcaaaaaa agacatcctc ctggcctggg gggatacttt
     4441 tgcttgtgta tttttgttac atggcttctt tgattattaa cgcacacagt tagctaaaac
     4501 taacctggcc tggtttaccc aggtttttca gaaagcattt gaatcaaaga aattagctta
     4561 aagtaaaaaa tttataaccc attatcaacg ggaaaatgtt gcaaattatt atcttgaaat
     4621 agttctctat ctcgccttgc ttgtcgatca agaactccaa gagcaactat ggcatctggc
     4681 tgacctgctc ttgcagcaca ggttatccag aaacgggctt tttttctatc ttctaccaca
     4741 cctttaccat aataatacat ataacctaca gcatactgag catctggatt tcccttttca
     4801 gcttccggtt ttaaacgaat gaatgccttc ctgtagtcct gtgctttaaa gcattggatt
     4861 ccttctcgta aatttaaggt actatgaata caggcagcca tcataggaat aaaaattatt
     4921 agaatgaata acttaaagat gcgttgcatg ccatttattc ctcttttaaa ggcttagcga
     4981 caggttcaaa ggttaaatca tttttcggaa gacttaaact ttctaaagtg ccatctcttt
     5041 ccacaagcac tcctcctggc ataatacgtt taattgttgc accaccaggt atcttatctc
     5101 ctacattata ggttttttct tccccactgg cagatcgtat aatcacttga gactcttcta
     5161 tcttgtccgc aaaaagaata ccgaccaaag taacattcag cattgattgt tttacattat
     5221 cctcattcaa gtctgcagga acataaactc caaataagga cgtattgaaa atataattga
     5281 gattctcttc tctcattcca gcaatagatt ttgtatttga aacagggata gccctaacat
     5341 aagtcaatgg ataaaataag gaaatccatt caaaaataat caaaatacca aacagggata
     5401 ttaaactaat gattatccat ttagcgtaat tggctgaaaa caaaaattga atatcaaatt
     5461 tcatacgttt ccaatcccag ttaaacctat caaaacaaat tcatccttct ctttaaataa
     5521 tattgatata tagcatccta ccacaaaata gatctttatc accctcactt caagatcact
     5581 agatcagagc ttacgaaaaa tcccaaggtc aaggcaaaaa ttttttttaa tgaaggagtt
     5641 tagaataaac taaatgaccg aattaaaaac tttttttaac aaaaagatag gtggttttcg
     5701 taagccctat agataatata tctttatcca ggctgaattc atacctttat gcatcagatc
     5761 gaccaccatg ccttgatatc tgttacgaag catgagtttg cacaacacta ttttttatat
     5821 atgatgtaat atcgatgaaa aaatccctgc tggatcatac tgttttttca aacctaccca
     5881 tgagtcgtat ttttctccaa aatgctttag ccaatagttg tctggtaatt ctgtacctaa
     5941 gaatcctgat aaatagcgtt taccattatt ttgcagcaag tgcttgtcga gatcctcaat
     6001 agccttcagg caacttttct ctagggaata aggtactcct ggatttaaaa tcataaactc
     6061 acaaattgaa tcacaatctg gtaacatcat aaacccggct ttttgcttgg caattggaac
     6121 aacatgaacc aaactggcat agtgaagcgg taattcctct aatagttggg aaagtactcc
     6181 tgttaaaaat gaggtaggaa caaaacattc ataccaagga tgtaacaaat cccattgccc
     6241 tgtcaacttc atcatatcaa agcgagagtt atgccttaaa aaataagata aaatactctc
     6301 ttcctgtata ttcaggacat tccatggctt taactgccct aaaatatttt ccgcatgccg
     6361 atcatattca acagaaaggt gcaaaccata taaccaataa gccatgggaa cacgtttatc
     6421 ttctttcaat cgagccccct gaattgaagg agagcaaaat atctccatat aatcgacttt
     6481 accctgtatt ttataaatat cttcaaacca ttgattctga tcagcataaa ccagagagta
     6541 agttttgacg cgtggctgaa ctgatcgtaa ctgaatacat gccttggtaa tgacaccaaa
     6601 tcgaccttgc cctgaaaggc aggcttgaaa tagaggtgag tttttttcaa cgatttgctt
     6661 tctccccaaa ccatcaacca cctccaatgc tgaaacataa gcattaataa caccgtattt
     6721 aaaagaggaa gcccctattc ctcctgcaga taaaacaccc ccgaccgaca aattacagtt
     6781 ataaggcagc acataggggg ctttattgtt cactagtgat ttttcaagca gattcttcca
     6841 actggtattg gcctcaaccc agatgagatc ttcactcaaa tcaagtgtct tgttgaaaga
     6901 ctgcatagaa attgttagtc ctccaggaac aggcaatgat tggccacctt gacttaaacc
     6961 attaccacga atagtcactg gtaagtgata ttgattggag aatagaatta atgactgcaa
     7021 tgactctatg ctttgaggag cggatacagc taccggctgt gattgaatga gcttgccaaa
     7081 atcctgacca aataaaacaa gcgattgctc atcactgagc aatgcttgtc cggtatcttc
     7141 cttatactgc ttgattttct ctaagctcca ctgattttgc gacatgttga ttcctttctt
     7201 ttgccaattc caatcgttta ttgcaagcaa gaatcaatcc atcaaacatc ttgctgaatg
     7261 catcatagca acgatctacc atccttagtg cttctctacg agtgctaatt ggtaatcttc
     7321 tggaatatac ttttctttcc atttcctctt caaataaagc atgtgctaat tctacttcaa
     7381 gatgagaact tgagaagtat ttcagatttt tatcttcacc cgtcttttta acttgtttga
     7441 caactttctc aaaaaataca tgtcctgatg attccagggt caacagcaag acaatattca
     7501 gattctcatc ctctatttta taaatttcag acataataga ataggcagca tcacgtacca
     7561 attgggaatc cttactgtat agccaggcaa catcatcgcg atcacaggcc ttgttatcac
     7621 atatttcacc catgtatttt ttatcactta aaaaccattt ttcgtgtcct gcatcttcta
     7681 atctgtgatg tcgagctact ttctttaaat aaggatcagt tactctttct tcattaattc
     7741 gaagtatatc ttgaaaagtc attgcccaaa atgttaactc cgggacaaaa taactgattt
     7801 cttctatact atttaattct tctaaaatgt tgaagaaagg atgattcatg aactcatgtt
     7861 gttttgaatc aatataggct tgaacagttt tcataacaga ctccatataa actttattta
     7921 gacaagttta tactgcagaa tacgtgccat ctttttaatc aaaatgttca ataatataac
     7981 aaaaattaag ttattttttt attctttgcg ctaataatcc tcaggtagcg acaaaaaaat
     8041 gtccctg
//
LOCUS       DACVWI010000138         8023 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.138, whole genome shotgun sequence.
ACCESSION   DACVWI010000138 DACVWI010000000
VERSION     DACVWI010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8023
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.138"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            36..1520
                     /locus_tag="JBH85_11020"
     CDS             36..1520
                     /locus_tag="JBH85_11020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAU0946734.1"
                     /translation="MLSPLIAMLFYILLGKTRNIQATYYGTTVIGFGFGLSLLALIVS
                     ANTVNQNSYFLFHASTLSLLLSTLILFISFIIHRFSLRYMHGDKCYRRYFFKLSAITL
                     TTVVMALADNLLLFWLAWSASNLLLINLMIHKSQWKAAYNSGILTLKTLLPGSLLLIT
                     AFWILFTLNNTLSIETITSEVSNKSSLAIAVALGFIILAAMAQSAIWPFHRWLMSSLN
                     SPTPVSALMHAGLVNGGGFLIVKFAPLFVTQENLLTILFIFGALTALLGTLWKLLQWN
                     IKSMLASSTMAQMGFMMMQCGLGLFPAAIAHLCWHGLFKSYLFLNSGSAVQQKKYQNK
                     SRPEKLTNLLTAFFGGLSGMYGFALITGKPILSLHASTFLLGFAFITGTQLTLGLIAY
                     EKHFKKVILALALVFSIGIFYGGSIHLIESLLPNLTGFPQYQLSSLQVLTLIIFFSLW
                     LLFSMGLFKKIRETRLWDWFYMYMFNASTPHPKTITANRHTYYY"
     gene            1535..3823
                     /locus_tag="JBH85_11025"
     CDS             1535..3823
                     /locus_tag="JBH85_11025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2309 domain-containing protein"
                     /protein_id="HAU0946735.1"
                     /translation="MSSHITLIKTNTSNENQMTQCNYPVDNDVMIIQAMVNNVTKQIT
                     PVWPLEKFIACNSLHGFESMSFEEAVIQNQTAKKGTPFNEKLERVNWHMIKWCGSFLD
                     IGQGTIEMPHRDKGLYFGFLKLAPFDSTLHQNNKSTKNWLSNLPEMPEQAIRLCLDKL
                     GVLNQRQEEFLQSTLSHLPGWAGYIKWISEWKNRNGKEENPVSLVDFLAVRLIITCIL
                     WPEANLEEKKKEKDSADTKQLIQNIKHKEDDYRQLLLKKLLPELNKVQIKGNRAKAQM
                     VFCIDVRSEPFRRCIEKLGHYETLGFAGFFGLPVSIKDYDGETIKDSCPVLLKPRFNI
                     HEKAIAANEHCLEHHEKGKEFKKILNRVYQQLKYNFSTPFALVESLGIWCGITMFLKS
                     CSPIFARRLTQDLNEMICPSIQTQPVFELDLLEKEVGISLQEQIAYAEMALRLMGLTD
                     NFAKLVIFCGHGSSTQNNPYASALDCGACGGNQGGKNAQLLASILNKITVRRALAENG
                     INIPQDTVFCGAQHDTTTDEVEIYHSNVSQFIDQDILDQLRADLNMAKHNNNLERINY
                     LNSIDCAEKDIVRRSADWSETRPEWGLARNAAFIVAPRQLTKNIDLEGRCFLHSYDWS
                     KDEDGTLLETILTAPMVVAQWINTQYLFSTIDNVAYGSGSKITHNVAGKIGVMQGNAS
                     DLMHGLPLQSVMSHDEKSFHEPQRLLTVVYAPREIISELVEKHDVLKTLFFNEWVHLV
                     AIDPRSHLFYKLEKTNTWSVIK"
     gene            3837..4190
                     /locus_tag="JBH85_11030"
     CDS             3837..4190
                     /locus_tag="JBH85_11030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HAU0946736.1"
                     /translation="MNIIKVSEKKEMNISLHPMKKIEVIVSGDNENMVATMMEKANIS
                     GFTLLRNVSGKGHHGFHEGKILFNDKASFVMFIAVAPEEAIAKIALGMKTLFQKNSGV
                     LFVSDVSVARVDYFS"
     gene            4200..5054
                     /locus_tag="JBH85_11035"
     CDS             4200..5054
                     /locus_tag="JBH85_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946737.1"
                     /translation="MEVTPMHYQNQRVLLASKHQKEKAIQPPFEEKLGCFIHVPADYD
                     TDQFGTFTGEIPRKASAYETLILKAKAAAKQFGYRYVISSEGSFGPHPQLYFCPADTE
                     LMAFVDLDNDLIIAEHEVSTETNYSHIDISATDDYEAFLNKAKFPSHGIIVRALNSEE
                     NYIQKGICEPEQLKTTIQKAFTYSTTIRLETDMRAMMNPLRMNVINKLAVKLVHRIQQ
                     HCPQCHTPGFGKISAEGHLACISCGTPTELYLRKVLNCLKCEFKTYQARDDGLEFAEQ
                     RYCPYCNP"
     gene            5114..5614
                     /gene="purE"
                     /locus_tag="JBH85_11040"
     CDS             5114..5614
                     /gene="purE"
                     /locus_tag="JBH85_11040"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HAU0946738.1"
                     /translation="MKPILIGLIMGSQSDWQTLIHAAHTLDALNIGYEAEIVSAHRTP
                     DKLFRYAEQAEARGLEVIIAGAGGAAHLPGMVAAKTSLPVLGVPVMSQTLNGVDSLLS
                     IVQMPAGIPVGTLSIGKAGAINSALFAAAILANKYPDIRAALKHYREQQTQKVLDNPN
                     PKEEKS"
     gene            5611..6690
                     /locus_tag="JBH85_11045"
     CDS             5611..6690
                     /locus_tag="JBH85_11045"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HAU0946739.1"
                     /translation="MKLGILGGGQLARMLALAAYPLGINTVCLDPSPDACAGQLTRLI
                     VSDFNDELALKQFLSEVDCVTIETENIPFSCAELIAQIKPFYPSTQALKITQDRLYEK
                     NFFRSLNIPTPEFLPVESEGELMQAITDIGMPAVLKTRRFGYDGKGQFVLRAQSDISK
                     SWGLLGSQPLILEELISFESEFSLIAVRNKSGETSFYPLIKNHHRKGILHFSEAPVHQ
                     DTLQQEAQTHAFKILEALNYVGVLTIEFFYQGNQLIANEIAPRVHNSGHWTIEGAHTS
                     QFENHLRALFDLPLGSTEVSGSCFLLNCIGNLLPLEPCLSIPGVHYHAYGKAPRPDRK
                     VGHVTLIDTHLERYAKSKDLLLDIS"
     gene            complement(6776..6988)
                     /locus_tag="JBH85_11050"
     CDS             complement(6776..6988)
                     /locus_tag="JBH85_11050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HAU0946740.1"
                     /translation="MNNQQKIKCPICDKQNTWRPDNLFRPFCSERCKLIDLGEWASES
                     RKIPGSSIDPESIVTTNNKQDNVDEQ"
     gene            complement(7108..7992)
                     /locus_tag="JBH85_11055"
     CDS             complement(7108..7992)
                     /locus_tag="JBH85_11055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0946741.1"
                     /translation="MEFKLLQTFIEVVRQGSFSKAAENLFTTQSTVSKAIKQLEEELG
                     ITLIERFKKRNVPTTAGEIVYQRGTKLLADRDDLLKELDEIRGLKQGRLRLGISPVGS
                     STLFAPLFVLYRQRYPGIEVELVEHGSDKLAECLRAGEIDFAGTLLPISEEFDCQLVR
                     SEPLVALLASGHPLATKHCISLPELKEIPFILFGSGFALHRIILDACRHAGFEPKVVA
                     QSSQIDFMLELVAAGLGVTFLPRMIATQRHTTQIRSLLLNGSEFQWNMAMTWRRNSYL
                     SEAAQAWLALVREVHVDN"
BASE COUNT         2446 a         1659 c         1599 g         2319 t
ORIGIN      
        1 tggataaatt tttaaatggg ttatcgattt cactcatgct atcgcccttg atagcgatgc
       61 tattctatat cttgttagga aaaacaagaa atattcaagc aacttattac ggtaccacag
      121 ttataggttt tggttttgga ttgagtctct tggcactaat tgtttctgca aatactgtaa
      181 accaaaacag ttatttttta tttcatgcca gcacactaag cctcttgcta agcacattaa
      241 tattattcat cagctttatt atccaccgtt tttccctacg atatatgcat ggtgacaagt
      301 gctaccgacg ttattttttc aaactttcag ccataacttt aacaactgtt gtgatggctt
      361 tagcagacaa tcttttattg ttctggcttg cctggtcagc tagtaacttg ctcttgataa
      421 acctcatgat tcataagtca caatggaaag cagcctacaa ctcagggata ctgactttaa
      481 aaacactatt accaggaagc ttgttgctta tcacggcatt ttggattctt tttacgttaa
      541 acaatactct gtcaattgaa acaataacca gcgaagtgag caataagtca tcccttgcta
      601 ttgccgtggc acttgggttt attatcttag cagcgatggc acaatcagcc atatggcctt
      661 ttcatcgctg gctaatgagc tcattaaact ctccaacacc ggtatccgct ctaatgcatg
      721 ctggattagt taatggaggg ggctttctga ttgttaaatt tgctccgctg ttcgtaacgc
      781 aagaaaattt attgaccatt ttattcattt tcggcgcact gactgcttta ttaggcaccc
      841 tctggaaact gttgcagtgg aatatcaaaa gtatgcttgc cagttccacc atggcacaaa
      901 tgggttttat gatgatgcaa tgtggcttag gacttttccc tgccgctatc gcccatctat
      961 gctggcacgg cttgtttaaa tcctatcttt ttctcaattc aggctctgcc gtccaacaaa
     1021 agaaatatca aaataaatca cgtcctgaaa aattgacaaa cttattgact gcattttttg
     1081 gaggacttag tggaatgtat ggctttgccc ttatcacagg gaaacccatc ttatctctgc
     1141 atgcctccac ctttctttta ggttttgcat tcatcacagg aacacaactc accctgggct
     1201 tgattgcata tgagaagcat ttcaaaaaag taattttagc cttggcttta gttttctcaa
     1261 ttggaatttt ttatggggga agtattcatc tcatcgagtc actcttacct aatctaacag
     1321 gatttcctca ataccaatta agcagcttac aagtcttaac tctgattatc ttcttttccc
     1381 tttggctttt attcagcatg gggttattca aaaaaatcag agagaccaga ctttgggatt
     1441 ggttttacat gtacatgttt aacgcaagta cgcctcaccc caaaactatt acggcaaatc
     1501 gccacactta ttactattaa gaaaaggagt caacatgagt agccacatca cactaatcaa
     1561 aactaacaca agcaatgaaa atcaaatgac ccaatgcaac tacccagtcg ataatgatgt
     1621 catgattatc caggccatgg taaataatgt tacaaaacaa attacacctg tatggcctct
     1681 ggaaaaattt attgcttgca attccttgca tggttttgaa tcgatgtcct ttgaagaggc
     1741 tgtgatacaa aaccagacgg ctaaaaaagg cactccattc aatgaaaaac tagaaagagt
     1801 caattggcac atgatcaaat ggtgtgggag ctttcttgac attggacaag gcacgattga
     1861 aatgcctcat cgtgataaag gcttatattt tggtttttta aagctagccc cttttgacag
     1921 cacactgcat caaaacaata aatcaacaaa gaactggtta tcaaatctgc cagaaatgcc
     1981 tgaacaagct attcgacttt gcctcgataa acttggcgta ttaaaccaaa gacaagagga
     2041 atttctccaa tccactctgt ctcacttacc tggatgggct ggatacatta agtggataag
     2101 tgaatggaaa aatcgtaatg gcaaggaaga aaatcctgta agcctagtcg attttcttgc
     2161 agtgaggctg ataatcacct gcatattatg gccagaagca aatctggaag aaaaaaaaaa
     2221 ggaaaaagat agtgcggata ctaaacaact tattcaaaat ataaaacaca aagaagatga
     2281 ttacaggcaa ttgcttttaa aaaagctttt gcctgagtta aacaaagttc agataaaagg
     2341 aaacagagct aaagcccaaa tggttttttg cattgatgtc cgctcagaac catttcggcg
     2401 atgtatagaa aaactaggac actacgagac tttgggattt gcaggattct ttggtttacc
     2461 tgtgagtatc aaagattatg acggtgaaac aataaaagac tcctgcccag tactattaaa
     2521 gccacgattt aatatccatg aaaaagcaat tgctgcaaat gaacattgcc tagagcatca
     2581 tgagaaaggt aaagagttta aaaaaatttt gaaccgggtc tatcagcaat taaagtacaa
     2641 tttttcaacc ccatttgcct tagtagaatc attaggaatc tggtgtggga ttacaatgtt
     2701 cctcaaatca tgtagcccaa ttttcgctag acgccttacc caagacctaa acgaaatgat
     2761 atgcccctcg attcaaacac agcctgtttt tgaattggat ttattagaga aagaggtagg
     2821 gatctcactt caagaacaaa ttgcctatgc cgaaatggca ttgagactca tgggactgac
     2881 tgataacttt gccaaacttg ttattttctg tggtcatggc agctctactc aaaataatcc
     2941 ttatgcttca gccctggatt gcggcgcttg tggaggtaat caaggtggaa aaaatgcaca
     3001 attactggcg tctatcctca ataaaataac agtgagaagg gctctggcag aaaatggaat
     3061 caatattcct caagacactg tgttctgtgg cgcgcaacat gacacgacga cggatgaggt
     3121 tgaaatttat cattcaaatg tcagtcaatt cattgaccaa gatatcctcg accagcttag
     3181 agctgactta aacatggcta agcacaataa taatttagaa cgaattaact atttgaattc
     3241 catagattgt gcggagaaag acattgtacg gagaagcgca gattggtctg aaacaaggcc
     3301 agaatgggga cttgctcgca atgccgcttt catcgtagca cctcgccaac tgaccaaaaa
     3361 cattgatctg gaagggcgtt gtttcttgca ttcttatgac tggagcaagg acgaagacgg
     3421 taccctgctt gaaaccattt tgactgcgcc tatggtggtt gcccaatgga ttaatactca
     3481 atacctgttt tcaacaatcg acaacgtggc atatggaagt ggcagtaaaa tcactcataa
     3541 tgtcgcagga aaaattggag tcatgcaagg caatgccagt gatttaatgc atggattgcc
     3601 actgcaatct gtcatgagcc atgatgagaa atcctttcat gagccacagc gcctgttaac
     3661 tgtagtctat gctcctcgcg aaatcatcag tgaactagtt gaaaaacacg atgtcttaaa
     3721 aaccttgttt tttaatgaat gggttcattt ggtagcgatt gatccacgga gtcacttgtt
     3781 ttacaagtta gagaaaacca atacatggtc tgtaattaag tgaaaggagt ttcctgatga
     3841 atataatcaa agtatcagaa aaaaaagaga tgaacatctc tttgcatccg atgaaaaaga
     3901 tcgaagtgat cgtatctggt gacaatgaaa atatggtcgc taccatgatg gagaaggcaa
     3961 atatttctgg ttttacctta ttgcgaaacg tctctggaaa aggacatcat gggtttcatg
     4021 aaggtaaaat tttgtttaac gacaaggcct ctttcgtcat gtttattgca gtggcgcctg
     4081 aggaagctat tgccaaaatt gcacttggca tgaagactct attccaaaag aattcaggag
     4141 tcctctttgt gtcggatgtt tctgttgcta gagtcgatta tttctcttag tatttaactt
     4201 tggaggtgac ccctatgcac tatcaaaatc agcgtgtttt actggcctca aaacaccaaa
     4261 aggaaaaagc gattcagcct ccttttgagg agaaattagg ctgttttatc catgtccctg
     4321 ctgattatga tactgatcag ttcggcacct tcaccggtga aataccaaga aaagcctcag
     4381 cctatgaaac attaattctg aaagctaaag cagcggccaa gcaatttgga taccgttatg
     4441 ttatatccag tgaaggaagc ttcggccccc atccccagct ttatttttgt cccgcagaca
     4501 ccgaattgat ggcctttgtt gacttggata atgatttaat tatcgcggag cacgaagtat
     4561 ctacagagac aaattatagt catattgata tcagtgccac agatgactat gaagcgtttc
     4621 tcaacaaagc aaaatttcca agccacggca ttattgttcg cgccttaaat agcgaagaaa
     4681 attatattca aaaaggaatc tgtgagcctg agcaactcaa aacaacgatt caaaaagcgt
     4741 tcacatacag tacaactatc cgccttgaaa ccgatatgag agcgatgatg aatccacttc
     4801 ggatgaatgt aattaacaaa cttgcggtga aactggttca ccgcattcag caacattgcc
     4861 ctcaatgcca cactccaggg tttggaaaaa tctcggctga aggtcattta gcctgcattt
     4921 cttgtggaac accaacagaa ctttacctgc gaaaagtttt aaattgtcta aaatgtgaat
     4981 ttaagactta tcaagcgcga gacgatggac tagaatttgc tgagcaaagg tattgtcctt
     5041 attgtaatcc ttaaccgttt gcgagaatca agtccatggt atgttataaa cattcaaaca
     5101 agagaggcac attatgaaac ccattttaat aggtctaatt atgggttctc aaagtgattg
     5161 gcaaacatta atccatgccg cccacacact ggatgcgcta aacattggct atgaggcaga
     5221 aattgtctcc gctcatagga caccggacaa acttttccgg tatgccgaac aggctgaggc
     5281 aagaggtttg gaagtgatta ttgctggtgc aggaggagcg gctcatctcc ctggcatggt
     5341 agcagccaaa acatctttgc ctgttttagg tgtcccagtc atgtcacaaa ctttaaacgg
     5401 cgtcgattcc ttgctatcca ttgtgcaaat gcctgcgggg atacctgtag gcactttatc
     5461 gataggtaaa gcaggtgcca tcaactccgc actgtttgca gccgcaattc ttgctaataa
     5521 atatcctgat attcgagctg ccttaaaaca ctatagagaa caacaaacac aaaaagtgct
     5581 cgacaatcca aaccctaaag aggaaaagtc atgaaacttg gtattctagg tggtggccaa
     5641 cttgcaagaa tgttggcatt agcagcatat cccttaggga ttaacactgt ctgcctggat
     5701 cccagccctg atgcttgtgc tggccaactc accaggctga tagtctctga ttttaatgat
     5761 gaattggctt taaaacaatt tttgtcagaa gtggattgcg tcacaataga aaccgaaaat
     5821 ataccatttt cttgtgccga attaattgcc caaataaagc ctttttatcc atcaacccaa
     5881 gctttgaaaa ttacgcaaga cagattatat gaaaaaaatt ttttcaggtc tctgaatatt
     5941 cctactccag aatttttacc agttgaatct gaaggtgaat tgatgcaggc tattacggac
     6001 ataggaatgc ctgccgtgtt aaaaacaaga aggtttggct atgatggcaa gggccaattt
     6061 gttttgcgag cccaatcaga tatttcaaaa agttggggcc tgttaggcag tcagcctctc
     6121 attctcgaag agttaatttc ctttgaaagt gaattttcgc taattgctgt tcgcaataag
     6181 agtggtgaaa caagtttcta cccattgatt aaaaatcatc acaggaaggg cattttacat
     6241 ttctcagaag cccctgttca tcaggacacc ttacaacagg aggcgcaaac tcatgcattc
     6301 aaaattttag aagccctgaa ttatgttggt gtacttacca ttgagttttt ttatcaaggc
     6361 aaccaattga ttgcgaatga gatagcacca cgcgttcata attctggcca ctggactatc
     6421 gagggagcac atactagcca attcgaaaat catctgcgcg ctctttttga tttgcccttg
     6481 ggaagcactg aagtaagcgg ctcttgtttt ttattaaatt gcattggcaa tctgctgcca
     6541 ttggagccct gtttatcgat cccgggtgtt cattatcacg cttatggaaa agccccccgg
     6601 ccagatcgca aggtaggtca tgttaccctt atcgatactc atttggaacg ttatgcaaaa
     6661 agcaaagact tacttcttga catttcatga gtagcagata gttagaaagc gagcaatagg
     6721 agtcagcgca taatattgtt cgcaatttgg aaagctgagc gttggattct gttgcctact
     6781 gctcatccac attatcctgc ttattattgg ttgtcactat agactcagga tcaatggagc
     6841 ttccgggaat ttttcggctt tcgctggccc attctcccag atctattaac ttgcatcgtt
     6901 cagagcaaaa aggcctgaac aggttatcag ggcgccaggt attttgtttg tcacaaatgg
     6961 ggcatttaat tttttgctgg ttgttcatca cggttttgct aattcatatt gtttagatat
     7021 gaagtatggc tacaccagca atgattttca atatatctgc cttatgattg atatgaaaat
     7081 agagctcttg cagcccccaa tctaaaacta attatcaaca tgcacttcac gcaccagagc
     7141 caaccaagct tgggccgcct cagagagata agaatttcta cgccaggtca tcgccatatt
     7201 ccattggaac tcacttccat taagtaaaag agagcgaatt tgtgtcgtat gcctttgagt
     7261 ggcaatcatc cgtggcaaaa aagtaacccc aaggcctgct gcaacaagct ccagcataaa
     7321 atcaatctga ctgctttgag ccaccacctt aggttcgaaa ccagcgtgac ggcacgcgtc
     7381 caatataatt cgatgtaacg cgaaaccact gccaaaaagg atgaaaggta tttctttaag
     7441 ttctggtaga gaaatgcaat gtttagttgc taatggatgt ccagatgcca ggagcgcgac
     7501 caatggttca gagcgtacta attggcaatc aaattcttcg gaaatgggta atagggtccc
     7561 agcaaaatcg atctctcctg cacgtaaaca ctctgcaagt ttatcgctgc catgttcaac
     7621 aagctctact tcaatgcctg gataacgttg tctgtataga acaaaaagag gggcaaataa
     7681 agtactgcta cccaccggag aaatacccaa acgtagtcga ccttgtttca aacctcggat
     7741 ttcatccaat tctttaagaa gatcatctcg atcagccaat aattttgttc ctcgttgata
     7801 aacaatttca cctgcggttg ttggtacatt acgcttttta aaccgctcaa tcagagtgat
     7861 acctaactcc tcttcaagct gttttatggc tttactgact gtagactggg tcgtaaagag
     7921 attttcagcc gctttggaaa aactaccctg ccgtacaacc tctatgaaag tctgaagcag
     7981 tttaaattcc ataattattc catattggaa aggttattag tct
//
LOCUS       DACVWI010000139         8014 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.139, whole genome shotgun sequence.
ACCESSION   DACVWI010000139 DACVWI010000000
VERSION     DACVWI010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 8014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8014
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.139"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            73..1650
                     /gene="cegC1"
                     /locus_tag="JBH85_11060"
     CDS             73..1650
                     /gene="cegC1"
                     /locus_tag="JBH85_11060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector CegC1"
                     /protein_id="HAU0946742.1"
                     /translation="MNTTEHTELGNGLLMDKIEGNPYLRIDEFGVLHLRLQRFGENNL
                     PEPMELEMSAGEIIAMAGDYFTQANWTMDLDLPKCELFNSPAELGKHLIRKPIDPKEE
                     NALITAYNNLAAPDVTRKEIDRIYSINNANYVPFSPTLNFYAQQLMYYFRVKDYGEML
                     VRNQTHFTPWSIRVYILGHAIALRYARLSYELKQLATDRNYQSDNPDLSTLKISLQNK
                     NETLSSNTLLDLANRYHAQAYSIELFTFHYYSDHFATGHMSMIGDLRVVLKERFGVWG
                     NILANNLHDEVNRVGVYTVRPYDPTPNTTEAPSRARGDGKFDTCLNQFNRLACLNGMT
                     ASLKDINQVLSGGVIPEQKKFGGLVHMPDVDFNSRQHQPLLVLSKGKVYYRNNLSQIH
                     IISPSEYEALRENPEKHGYKELTSKWAAFKLVTKLRLFPYLYDGSVMPVSDEKLAEII
                     ADEKRRNPQRAPIPTPSCLPESEPTVFDWRTKASWRNNKDSLDILDGLKKHSILAAKQ
                     THSAIQEEEEVRLNLGV"
     gene            1819..2289
                     /locus_tag="JBH85_11065"
     CDS             1819..2289
                     /locus_tag="JBH85_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HAU0946743.1"
                     /translation="MKRLIPTFIYLLVLAITPFSTHAEALLKDTFGHNIPFSSLKGKW
                     VFINYWASWCETCVDEIPEFNRFYKNHKNEAVALYAVNYDALPLPEQKLLIKKFNINY
                     PNLLKDPAQDLQLGDITGVPVTFVFNPKGQLIKKLYGGQTAKTLEKVIAENRTS"
     gene            complement(2394..3653)
                     /gene="hflX"
                     /locus_tag="JBH85_11070"
     CDS             complement(2394..3653)
                     /gene="hflX"
                     /locus_tag="JBH85_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HAU0946744.1"
                     /translation="MGIRVVFERPQGGERAVLVQLALPGVDADKALAEFEELALSAKA
                     EVLDCVLGARATPDAKYYVGKGKAEEIAHLVNMLDADLVLVNHELSPSQERNLERLFG
                     CRVVDRSGLILDIFAQRARTFEGKLQVELAQLQHLSTRLIRGWTHLERQKGGIGLRGP
                     GETQLETDRRLLRERIRYINKRLEKVRCSRDQNRQARRKASMPTVSLVGYTNAGKSTL
                     FNVLTGEHTYVADQLFATLDPTMRKLELPGSSAAILADTVGFIRDLPHHLVEAFRATL
                     EETQQADLLLHVIDISDPNWRETVFEVQKVLDELKVNNIPVIQVFNKIDLQEGWQPKI
                     DYTEDSCKVWLSATTGAGLDLLKEAIATQLHGMILIEDIVIKPDQAKLRAQLYQLGAV
                     LKESVDENGDWLMKIRITADQKRRLLS"
     gene            complement(3666..3923)
                     /gene="hfq"
                     /locus_tag="JBH85_11075"
     CDS             complement(3666..3923)
                     /gene="hfq"
                     /locus_tag="JBH85_11075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HAU0946745.1"
                     /translation="MSKNHLLQDPFLNELRKEKVPVSVFLVNGIKLHGIIDSFDQYVV
                     MLKNSITQMVYKHAISTVVPSRMVKIPAEESSGEEEGTVAD"
     gene            4111..5370
                     /locus_tag="JBH85_11080"
     CDS             4111..5370
                     /locus_tag="JBH85_11080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946746.1"
                     /translation="MTFTCDELKGLEHPYEVLGNGDALAENREELNKLSNDEKLVLAS
                     RLVLECPVNELKDFSHAIEAARMPQDDSDTFHSFLFQAYQVKKRIISLLDPRNKNPHS
                     MILEKEFDGELFNNFNKLAIDVLNNNEVAIALRLAETTPAQDRSRVSQNINNIFPQSL
                     FAAKVGHAFAVRRDIERLLLGDRPDQFFSSREFKIDSCIEFASLFNVINDKESSIAGK
                     LALRTPAENRTDVVMKIKGFCAEDSELAIKVQSALALRRDIERNLLGDNPEQFFNSRD
                     FSVDLCLEFAILFPELLKGHEQAIGEKLAKLDAKVRSDISRKLEMINGAAHEQSSPFR
                     IIASAMVPKEEPCLTKPTPVVLPSTEEIVPKQESPTSLRNRNVLFKEQTEEHKKKNSQ
                     MEPIVSDSEEEEEKQNCWTSFCGLFGK"
     gene            5524..5715
                     /locus_tag="JBH85_11085"
     CDS             5524..5715
                     /locus_tag="JBH85_11085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014840681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946747.1"
                     /translation="MNAALNLINDSDRKTIEQVYFFSFKTIEAPYLTKNQGKTKCAVL
                     NERKDSLLIDSRELSPLSE"
     gene            5899..6756
                     /locus_tag="JBH85_11090"
     CDS             5899..6756
                     /locus_tag="JBH85_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase"
                     /protein_id="HAU0946748.1"
                     /translation="MGTLMKENKLTVALVQEQWYENPKEHQDKLASGIFSATQQGAKL
                     VCLQELTLSPYFCTRSDVDPAPYMEDIATGPTAQFVSQMAKSNQIHITASLFEKAGYN
                     TAVAFNPQGELIAVTRKQHIPSGEKYHENFYFKPGNSNYPVHTIAGHYLGLPTCYDQW
                     FPELSRIYGLKGAEILVYPTAIGGEPTAPGFDSQPMWQKVMVAQGIMSNTFIIAVNRI
                     GCEDGLSFYGSSFISTPMGEILVQAPRNEPAVLVAELDFSQRELWGRLFPFPQQREPE
                     TYHELVKSR"
     gene            6776..>8014
                     /gene="speA"
                     /locus_tag="JBH85_11095"
     CDS             6776..>8014
                     /gene="speA"
                     /locus_tag="JBH85_11095"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HAU0946749.1"
                     /translation="MNNNTLSDDNLYNIENWGEGYFRINSKGNIEISKKPGKPGVELQ
                     TIVDAADRAGLHLPLLIRCSDILHDRVHRIYQAFTQAREDTCYAGNYQLVYPIKVNQE
                     QSVVRELLKSPDNQIGLEAGSKPELMAVIGMLGDHQSTIVCNGYKDTSYIRTALIAQQ
                     MGHKVFIVIEKKSELDIILKESARLQIKPTLGVRIRLVSKSAGKWENTGGVKSKFGLN
                     AKQVLELILQLKANDMLDCLQLMHCHLGSQIANIHDIRHCMQEVARYYIELRQLNAPI
                     GTIDVGGGLSVDYEGTRSNKGCSMNYSLVEYATHIMLALKHLCQEAEISEPDLISESG
                     RALTAHHAVLISNITDVEIINKAPVLPEISEDDSHVIRDIYDTYQAITDSSPTEIYNY
                     AAHSLNEAHSLFKHGVISLQE"
BASE COUNT         2532 a         1635 c         1540 g         2307 t
ORIGIN      
        1 tatttaaact attggcacgt tcagttatca aggatatgat gaaaatagac tctaaggata
       61 ggagcagaat ttatgaacac aacggaacat acagagctgg gcaatggttt gctcatggat
      121 aaaatcgaag gcaatccata tttacgaata gatgagtttg gcgtgctcca tctgcgactt
      181 caacgattcg gtgaaaacaa cctgcctgag ccaatggagc tggagatgtc cgctggcgaa
      241 attattgcca tggcgggtga ctactttaca caggctaatt ggactatgga tttggatctg
      301 cccaaatgcg agctattcaa ctccccggca gaattgggaa aacacctcat tcgcaaacct
      361 atagatccta aagaagagaa tgctttaatt acagcataca ataacctggc tgctcctgat
      421 gttactcgaa aagaaattga tcgcatttat tccattaata atgctaacta tgtgcccttt
      481 tcgcctacgt tgaatttcta tgctcaacaa ctgatgtatt attttcgcgt caaagactat
      541 ggggaaatgc ttgttcggaa ccaaactcat tttacgccat ggtctattcg agtttatata
      601 ttgggtcacg ctatcgcatt gagatatgca cgtttatcct acgaattaaa acaattggct
      661 accgacagaa actatcaatc agataaccct gacttgagta ctttaaaaat ctcattacaa
      721 aataagaatg aaactctttc aagcaatacc ctgcttgatt tggcgaatcg ctatcacgcc
      781 caagcttatt ctatagagct gtttactttt cactactatt ctgatcattt tgctacagga
      841 catatgtcca tgattggcga tttacgtgtc gtattaaaag agcgtttcgg agtatggggc
      901 aatatcctgg ctaataatct tcatgatgaa gtaaatcgtg ttggagttta tacagtgaga
      961 ccctatgatc caacccctaa tacaacagag gctccgtctc gagcacgtgg ggatgggaaa
     1021 tttgatacct gccttaatca atttaaccgt ttagcttgcc taaacggtat gaccgcatca
     1081 ctaaaggaca tcaatcaagt attatcagga ggtgtaatac cggagcaaaa aaaattcggt
     1141 ggtttggtgc atatgcccga cgttgatttt aactcaagac aacatcaacc attgctggtt
     1201 ttaagtaaag gaaaagtata ttaccgcaac aatctcagtc aaattcacat aatttctcct
     1261 tctgaatatg aggcactcag agaaaaccct gaaaaacatg ggtataaaga gctaaccagt
     1321 aaatgggctg cctttaaatt agttaccaaa ttacgtctct ttccttatct ttatgacggc
     1381 tcggttatgc ctgtttctga tgaaaagctc gccgaaatta tcgcagatga aaaacgcaga
     1441 aatccacaac gagctcccat ccccacacca tcatgccttc cggaaagcga accaactgta
     1501 ttcgattggc gaacaaaagc gagctggcgt aataataaag actctctgga tattttggat
     1561 gggttaaaga aacacagtat tttggcagca aaacaaaccc attcggccat tcaagaggaa
     1621 gaagaggtcc ggttgaattt gggagtctga ttgtttcctg ataaactagt ggcctattgt
     1681 tactatttaa cttttagtaa cccatttgag ctgtcttaaa gttagtaagt tggacataag
     1741 caaatacatg cattttctta tgtccaattt ggttaacaat aataaccgta aacaattttg
     1801 actattcaag aggtgatcat gaagcgctta atacctactt tcatatacct gctggtttta
     1861 gcaattactc ccttctctac tcatgcagaa gcgcttttga aagacacttt tggtcacaat
     1921 attccttttt catcacttaa aggaaaatgg gtttttatca actattgggc aagctggtgt
     1981 gaaacctgtg tcgatgaaat ccctgaattt aatcgctttt acaaaaacca taaaaatgag
     2041 gcagtagccc tatacgcagt caattacgat gctcttccct taccagagca aaaattacta
     2101 attaaaaaat ttaatattaa ctaccctaat ttgttaaagg atccggctca ggatttacaa
     2161 ttaggagaca tcacaggagt gcctgtaact tttgtattta acccaaaagg gcaattaatt
     2221 aaaaaattat acgggggaca aacggcaaaa acattagaaa aagtcattgc agagaacagg
     2281 acctcctaag aagataaata aaaattatat ttatggttaa taagttaaag attttcttgt
     2341 gaatttatca agtctggaat cgattctatc gccccgcagc ctgacttgat tattcatgaa
     2401 agcaatcgtc gtttttgatc agccgttatt ctaattttca ttaaccaatc gccgttttca
     2461 tctacagact ctttaagtac agcacctaat tggtataatt gggctcgtaa ttttgcctgg
     2521 tcaggcttaa ttacaatatc ctcaattaaa atcataccat gcaattgagt tgctattgcc
     2581 tcttttagaa gatccagacc agcgccggtt gttgctgata accacacctt gcaagaatcc
     2641 tcagtataat caatttttgg ttgccaacct tcctgcaaat caattttatt aaatacctga
     2701 attaccggga tattattaac ttttaattca tctaacacct tttgtacttc aaaaaccgtc
     2761 tctcgccaat tcgggtcaga aatatcaatg acatgcagta atagatcagc ttgctgggtt
     2821 tcctctaaag tagcgcggaa tgcttctacc aagtgatggg gaagatctcg aataaatcct
     2881 actgtatctg ctaaaattgc tgctgaggac cctggcaatt ccaatttacg catcgtcgga
     2941 tccaaggttg caaacaattg atcagccaca taagtgtgtt cccctgttaa aacattaaat
     3001 aaagtggatt ttccggcatt ggtgtaaccc actagagaaa cagtgggcat ggacgccttc
     3061 cgcctggcct gcctgttttg atcgcggctg caacgtactt tttccaatcg cttattgata
     3121 taacgaatgc gctctcttaa caaacgccgg tccgtttcca attgagtttc tcctgggcct
     3181 cttaaaccaa tccctccttt ttgcctttcc aaatgggtcc atccacgaat aagccttgtt
     3241 gataaatgtt gcaattgggc taactcaact tgaagtttac cctcaaaagt acgagctctc
     3301 tgagcaaaaa tatcaagaat caagccactt ctatcgacaa ctcgacatcc aaataatcgc
     3361 tcgagattcc gctcttgaga aggcgatagc tcatgattga ctaacactaa atccgcatcg
     3421 agcatgttta ccaaatgagc tatttcctcc gccttacctt tccctacata atatttggca
     3481 tcgggagtag ctcgggcacc taatacacaa tccaacacct cagccttcgc cgaaagcgct
     3541 aactcttcaa actcagccaa tgccttatca gcatcaaccc cggggagagc taactgcacc
     3601 aaaacagctc gctcaccgcc ttgtggacgt tcaaacacta ccctaatccc caaacaagaa
     3661 attgattagt ctgccacagt tccttcttcc tcaccagagc tttcctcagc aggaattttg
     3721 accattcgag aaggaacaac tgttgaaatg gcgtgtttat aaaccatttg ggttatggag
     3781 tttttaagca tcaccacata ttgatcaaaa gaatcgatta tcccatgcaa tttaatacca
     3841 ttgaccagga acactgaaac aggtaccttt tccttgcgca attcatttag gaaagggtct
     3901 tgtagtaaat gatttttaga cattgcctac tccttgttgt tattgtaatt tttaaaggca
     3961 aaaacgggta tctaactatt tattcgacac cctataataa aactttagta tattttcatg
     4021 acagcgtggt ttgaattcgt taatatagtc aatcaaaata tttttgcaca tctagaatca
     4081 ggctactgat gagttaataa ggagatttta atgacgttta cttgcgatga attaaaagga
     4141 ttagagcacc cctacgaagt acttggcaat ggtgacgcac tggcggaaaa ccgcgaagag
     4201 ctaaacaaat taagcaatga cgaaaaatta gttttagcca gccgcctcgt tttggagtgc
     4261 cccgttaatg aattaaaaga tttttctcat gccattgaag cagcaagaat gccacaagat
     4321 gatagcgata cctttcattc ctttttattc caggcttatc aggtaaaaaa aagaatcatt
     4381 tccttgctcg atccgcgcaa taaaaaccct cattccatga tattggagaa ggaatttgat
     4441 ggtgagctat ttaataattt taataaattg gctattgatg tattaaataa caatgaagtc
     4501 gcaattgcat tgagactggc tgaaacaact cctgctcaag atcgttcacg agtatctcaa
     4561 aatatcaaca atattttccc acagtctctg tttgccgcta aagtcggcca cgcttttgcc
     4621 gttcgcagag acatagagcg actattgcta ggtgacaggc ctgatcaatt cttctcaagt
     4681 cgtgaattca agatcgattc ttgcatcgaa tttgcaagtt tattcaatgt aattaatgat
     4741 aaagaatctt ctattgccgg aaaacttgca ctgagaactc ctgctgaaaa tcgcactgat
     4801 gtagtaatga aaattaaagg tttttgtgcc gaagatagtg aacttgcgat aaaagtccaa
     4861 tctgcccttg cattaagaag ggatatagag cgcaatctat taggtgataa tccagaacaa
     4921 tttttcaata gccgagattt tagcgttgat ttatgccttg agtttgcaat tttattcccg
     4981 gaattattaa aaggccatga acaagctatc ggagaaaaat tagctaagct ggatgctaaa
     5041 gtacgctcag atatcagtag aaaactggaa atgatcaatg gagcagctca cgagcaatca
     5101 agccctttca gaataatagc cagtgccatg gtgcctaaag aagagccttg cctgacaaag
     5161 cccactcccg ttgtcttgcc atctactgaa gaaattgtac caaagcaaga atcaccaacc
     5221 agtttacgca acaggaacgt tttatttaaa gaacaaacag aagaacacaa gaagaaaaac
     5281 tctcagatgg aacccattgt ctcagattct gaagaagaag aagagaaaca gaattgctgg
     5341 actagttttt gtgggttatt tggcaagtaa agcagccata tcttttgccc ttacttggtt
     5401 aagggcaact ttacactttt ttacccattc tttacacatc aggtagcaat aattcatgtt
     5461 aatatttctc ataaattcat tgacttattg caatctgctc gagttaaaga cataaattaa
     5521 caattgaacg ccgctttaaa cttaataaat gattcggaca gaaaaactat tgaacaagtt
     5581 tactttttta gctttaaaac aatagaagcc ccttacctca caaaaaatca aggaaaaacg
     5641 aaatgtgctg tcctaaatga aaggaaagat tcgcttctaa tcgatagtcg cgagctttca
     5701 ccactttcag aatagctgcc attctgaaaa ttcattagta attagtaaca gccaaaatga
     5761 gcagtgaatt gaaattaatg ctagtacaaa gagagctttt tttgataaca tagccagatt
     5821 tttaatctgg gttgatgatt taacttaagc aagagtaagc cattcgaatt cgagataaaa
     5881 attacttaac atcatttatt gggaactcta atgaaagaaa acaaactaac ggtcgcactg
     5941 gttcaggaac aatggtatga aaatcctaaa gaacatcaag ataaactggc ttctggaata
     6001 ttttcagcta cccagcaagg ggcaaaactc gtttgtttac aagagcttac cttaagccct
     6061 tatttctgta cacgtagtga cgtcgatccc gccccttata tggaggacat cgccactggt
     6121 cccactgctc aatttgttag ccaaatggca aagtcgaatc aaattcatat taccgcatcg
     6181 ctttttgaaa aagctggtta caataccgca gttgctttta atccccaagg agaattgatt
     6241 gctgttacca gaaagcaaca tatccccagt ggtgaaaaat atcatgaaaa cttttacttc
     6301 aagccgggca actccaatta tcctgtccat accattgctg gtcactactt gggattacca
     6361 acatgctatg accaatggtt cccggaatta tcaaggattt atggattaaa aggagctgaa
     6421 attttggtct atcccacagc gattggaggg gaaccgactg cgccaggatt tgatagccaa
     6481 cccatgtggc aaaaagttat ggtagcacaa ggaattatga gtaacacatt cattattgcg
     6541 gtcaaccgga ttgggtgtga agatggttta agtttttacg gaagcagctt tatcagtacc
     6601 cctatgggcg aaattttagt tcaggcaccg cgtaatgaac ctgccgtatt ggttgctgaa
     6661 ctggatttta gccaacgtga attgtggggg cgattatttc catttcccca acaacgagag
     6721 cctgaaactt atcatgaatt agtcaaatcc cgttaatcct ctttggaacg ttagaatgaa
     6781 caataatact ctatcagatg acaatcttta caacatagaa aattggggcg agggatactt
     6841 ccgaattaac tccaagggaa atattgaaat cagtaaaaaa cccgggaaac cgggtgttga
     6901 actgcaaact atagttgatg cagctgatcg tgctggcttg catttgcctt tattgatccg
     6961 ttgtagtgat attcttcatg atagagtcca tagaatatat caggcgttca cccaagctcg
     7021 agaagacact tgttatgccg gtaattatca gctggtttat ccaattaaag taaaccagga
     7081 acaaagtgtg gtacgggaat tgttaaaatc gcctgataat cagataggcc tggaggcagg
     7141 cagcaaacct gaattgatgg cggttatagg tatgctgggt gaccatcaga gtactatagt
     7201 ttgcaacggc tataaagaca caagttatat tcgtacagcg cttattgctc aacaaatggg
     7261 tcataaggtt tttattgtta ttgaaaaaaa atctgagttg gacattattt taaaggagtc
     7321 tgcacgcctt caaatcaaac caacattagg tgtgcgaatt cggctggtca gcaagagtgc
     7381 tggcaagtgg gaaaataccg gcggggttaa atcaaagttt ggactaaatg ccaaacaggt
     7441 acttgaactg attttacaat taaaagccaa tgatatgctg gattgtttgc agctaatgca
     7501 ctgccattta ggttcacaaa ttgccaacat ccatgacata cgccattgca tgcaggaagt
     7561 ggcgagatac tatattgagc tacgtcaact caatgctccg ataggtacca tcgatgtggg
     7621 tggaggtctg agtgtcgatt atgaggggac tcgatccaat aaaggatgct caatgaacta
     7681 cagtcttgtt gagtatgcta cgcacatcat gttagcttta aaacacttat gtcaagaagc
     7741 tgagatatca gagcctgatc ttatctccga atcaggacga gcattaacag cccatcatgc
     7801 tgtattaatt tctaatatta cggatgtaga gattatcaat aaagcgcccg ttcttcctga
     7861 aatatcggaa gatgattcgc atgtcattcg agatatttac gatacttatc aagccattac
     7921 agatagctcg cccactgaaa tatataatta cgcagctcat tcgcttaatg aagcgcattc
     7981 ccttttcaag catggggtaa ttagcctgca ggaa
//
LOCUS       DACVWI010000140         7642 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.140, whole genome shotgun sequence.
ACCESSION   DACVWI010000140 DACVWI010000000
VERSION     DACVWI010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7642
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.140"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(39..1847)
                     /gene="oadA"
                     /locus_tag="JBH85_11100"
     CDS             complement(39..1847)
                     /gene="oadA"
                     /locus_tag="JBH85_11100"
                     /EC_number="4.1.1.112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit alpha"
                     /protein_id="HAU0946750.1"
                     /translation="MSQEELMSKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDV
                     GFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQMLPNTQLSMLLRGQNLLGYRNYADD
                     VVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLD
                     NFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLAS
                     ICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYDTELDLNILLEIDDYF
                     KAVRKKYSQFESEAQNIDPRVQLYQVPGGMISNLYNQLREQNALDKMDAVHKEIPRVR
                     KDLGYPPLVTPTSQVVGTQAVINVLTGERYKTITNEVKLYCQGKYGTPPGKISSALRK
                     KAIGRTEVIEVRPGDLLPNELDQLQNEISDLALSDEDVLLYAMFPEIGRQFLEQRKNN
                     QLIPEPLLTQSSAPDNSVMSEFDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEE
                     VVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSVGDEVKAGQAVLVIEAMK
                     METEIKAPANGVVAEILCQKGDKVTPGQVLIRVEVS"
     gene            1785..2024
                     /locus_tag="JBH85_11105"
     CDS             1785..2024
                     /locus_tag="JBH85_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946751.1"
                     /translation="MGITQGDICYKRFRHKLFLAQEINKNIINLKSVHSLSTIHCFLL
                     NIKFLAKLAEILPISSQIYRHVHKVQAKSANLRLY"
     gene            2031..2468
                     /gene="aroQ"
                     /locus_tag="JBH85_11110"
     CDS             2031..2468
                     /gene="aroQ"
                     /locus_tag="JBH85_11110"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HAU0946752.1"
                     /translation="MKKILVLHGPNLNLLGSREPSIYGHASLTQINGDLIQEADNAGI
                     RLSCFQSNAEAELIQAVHQAGIDKINYIIINPAAFTHTSIALRDALSAVAIPFIEVHL
                     SNIFSRETFRHHSYFSDIAVGVISGLGTKGYLLALQAIIKELK"
     gene            2482..2964
                     /locus_tag="JBH85_11115"
     CDS             2482..2964
                     /locus_tag="JBH85_11115"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HAU0946753.1"
                     /translation="MDIRKIRKLIELLEETGISEIEIKEGEESLRLSRHSNIVAETAP
                     QIHYVAPSAVKQTASAPSSNTSTTESHVIENKQVTSASSGHKIRSPMVGTMYTAPSPE
                     SPPFVTVGQSVKAGDTLCIIEAMKMFNEIEADRAGKIVEILVKNGDPVEYDQALFIIE
                     "
     gene            2977..4320
                     /gene="accC"
                     /locus_tag="JBH85_11120"
     CDS             2977..4320
                     /gene="accC"
                     /locus_tag="JBH85_11120"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014841032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HAU0946754.1"
                     /translation="MLSKIVIANRGEIALRILRACKELGIQTVAVHSDVDKDLLHVRL
                     ADETVCIGPAPAQKSYLNIPAIISAAEITDAVAIHPGYGFLSENADFADIVEQSGFRF
                     IGPRGDSIRLMGDKVSAIAAMKAAGVPCVPGSDGPLGDDDNKNLELARKIGYPIIIKA
                     AGGGGGRGMRVVHSESNLLSAIALTRSEAKAAFNNPIVYMEKFLENPRHVEFQVLGDG
                     KGHAIHLGERDCSMQRRHQKVVEEAPAPGITPELREEIGASVIKACKELQYRGAGTFE
                     FLFQDGCFYFIEMNTRIQVEHPVTEMITGIDLIKEQIKIASDIPLTLTQKDIKLRGHA
                     IECRINAEDPRNFMPSPGTIKLLHQPGGPGIRFDSHIYSSYVVPPNYDSMIGKLISYG
                     ATRAEAIARMRNALDEIIIDGIKTNIELHQRILHDKSFMEGGTNIHYLEKMLKDS"
     gene            4322..5191
                     /locus_tag="JBH85_11125"
     CDS             4322..5191
                     /locus_tag="JBH85_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HAU0946755.1"
                     /translation="MWFQLKIEHCPNDKIEEITEELEECGALSITLTDKNDNPVLEPE
                     PGTTPLWPEVIIHALFAQAEEAQYAREQLVAKRPSLHCSLELLADKNWERAWMDDFRP
                     QRFGNRLWVCPTWLPPPEPDAVNLILDPGLAFGTGTHATTSLCLTWLEQADLKNKSII
                     DYGCGSGILSLAAIKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQN
                     PVHLVIANILLAPLISLKERFHQLLPSGAHLVTSGILEEQAPLLIDAYDSAFTHIATE
                     YCEGWSLLVFTSK"
     gene            5218..6807
                     /gene="purH"
                     /locus_tag="JBH85_11130"
     CDS             5218..6807
                     /gene="purH"
                     /locus_tag="JBH85_11130"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HAU0946756.1"
                     /translation="MAKKQIYSSFKPRRALLSVSDKRGIRELGQVLHDQGVELIATGN
                     TAAILREHKLPVTDVSECTGFPEIMDGRVKTLHPAIHAGLLARGEEDSPVLRQHGIKP
                     IDLLIVNLYPFEQVINHPDCDFNKAIENIDIGGPAMVRAAAKNHAHTYVIVDPNDYSK
                     LIHYLQDQKAPSHWNFALAKKAFAHTAAYDAAIANYLTTLDNDYVPTGFPDILTCQFN
                     KITDLRYGENPHQQAIFYADKNSHPGSLSTATLLQGKQLSYNNILDADAALDCVKSFS
                     NEKSVCVIVKHTNPCGIALSDTSLDAYLKAFQSDPISAYGGIIAFNGTLDSDTAKAIL
                     EKQFVEVIIAPDANEEAKKILATKENTRVLLTGFWQQGNNFRLSMKKVDGGLLVQEHD
                     SLSLESCELQTVTQIKPTDEQLQNLMFAWLAAKHVKSNAIVYANDLTTIGIGGGQTSR
                     VMSARIGLWQAEQMGFDPKGAVMASDAFIPFPDTIEIAAKAGISAIIQPGGSIRDEKI
                     ISCADQHNIAMIFTGVRHFKH"
     gene            7092..>7642
                     /locus_tag="JBH85_11135"
     CDS             7092..>7642
                     /locus_tag="JBH85_11135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DotU family type IV/VI secretion system protein"
                     /protein_id="HAU0946757.1"
                     /translation="MTTEQYPSSLVNRLAITEPALVPSGYYRSKLFIAPFSTNVLVAA
                     AGPILSLLERLCLSPSLPPVEDIRENIQHELRAFHSKLDASKYPLDIISIAQYLLSAT
                     IDEILGKSYLRVYNLTTEFKSFTPLSSDGAQPQQRFFEILNYIKERPNQFLDLIELAY
                     FCLIAGFEGEYHLKADGRQCLDNT"
BASE COUNT         2397 a         1600 c         1460 g         2185 t
ORIGIN      
        1 taaaaacaag tagtgaaaat aatacactta actacccgtt aactcacctc cactctgatt
       61 aatacttgcc ctggagtcac tttgtctccc ttttgacata atatttctgc aaccacccca
      121 tttgcaggtg cttttatttc tgtctccatt ttcattgcct caataaccag tacagcctgc
      181 ccggccttga cttcatcacc aacagaaaca tgaattgcaa taatagaacc ggggatagct
      241 acagtaatat ctccaggtcc tatcttgtta ttaacagatg aacgctctat tttgtcatga
      301 agttcagaat gttgcacaac aacttcttca ggaacaccat caacccacaa aaaacaggat
      361 tgttgaccat gctcaatcat tccataacca gctactttta catgataact ctcaccatga
      421 agaataatat caaactcaga cataacggaa ttatctggtg cacttgattg agtcaataat
      481 ggctcaggaa ttaattgatt atttttacgc tgctctaaga attggcgccc aatttcggga
      541 aacatcgcat aaagaagaac atcctcatca cttagtgcca aatcacttat ttcattttgc
      601 aattgatcta attcattagg taacaaatcg ccaggcctga cttcaatcac ttctgttcgt
      661 ccgatcgctt ttttccgtaa agcagaacta attttgccag gaggagtgcc atattttccc
      721 tgacagtaga gtttcacttc attggttatt gttttatacc gttctcccgt tagaacatta
      781 ataactgcct gagttccaac gacttgagat gttggcgtaa ccaaaggcgg ataacccaag
      841 tccttacgaa cgcgggggat ttccttgtga acagcatcca tcttgtctaa tgcattctgc
      901 tcccttaact gattatacag atttgagatc atgccacctg gcacttgata caattgaaca
      961 cgagggtcaa tattctgtgc ctcactttca aattgagaat acttcttgcg gacagcttta
     1021 aaataatcgt ctatttccaa taaaatattt aaatccaatt ccgtgtcata cggagtgtca
     1081 gtcaatgcgg caaccaatgc ttccgtaggt ggatgagatg caccgccaga aaaagatgaa
     1141 atcgctgtat caatgtgatt acaacccgct aaaacggcct cataatggca tatacttgcc
     1201 aaaccggaag tagaatgact atgcaaatgt acaggtaagc cagtcgcttg ttttaaaccg
     1261 gcatacaatt cgacagtcac cgttggggtt agcaaacctg ccatatcttt tatggcgata
     1321 ctatcacatc ccatttcagc caattttttc cctagctcca aaaaattgtc caaagtatga
     1381 accgggctgg ttgtgtaaca aattgctccc tgggcatgtt ttttatgtga tttaatcgcg
     1441 tctatggcta ctttaaggtt tcgcgcgtca tttaaagcat caaacacacg aaatacatcc
     1501 actccattat tcacggccaa tttaacaaac gctcggacta catcatctgc ataattccta
     1561 tagcctaaca aattttgacc tcttaacagc atagagagtt gagtattcgg taacatttgg
     1621 cgaagttgac gcaatcttga ccagggatct tcctttaaaa atcgcaaaca ggcatcaaaa
     1681 gtagcgcctc cccagacttc catagcccaa aatcctacat catccatttt attacagatt
     1741 ggcaacatat cttcagtacg cattcttgta gcgattaagc attgatgggc atcacgcaag
     1801 gtgacatctg ttataaacgt tttagacata agctcttcct ggctcaagaa ataaataaaa
     1861 atatcataaa cctaaaatcg gtacactctt taagtacaat ccattgcttt ttactaaata
     1921 taaaatttct tgctaaactt gcggagatct tgccgatatc ctcgcagata tatagacatg
     1981 ttcataaagt tcaggcaaaa tctgcaaatc tcagactata ctgatgtgta atgaaaaaaa
     2041 ttctagtatt acatggtcct aatctaaacc ttttaggctc ccgagaaccg tccatttatg
     2101 gacatgcttc gttaactcaa atcaatggtg atttaatcca ggaagcagac aatgcaggga
     2161 ttcgactcag ctgctttcaa agcaatgctg aagcagagtt aattcaagct gtccatcagg
     2221 ctggaattga taaaatcaat tacattatca taaatcctgc ggcatttact cacacaagca
     2281 ttgctcttag agatgcttta agtgcggttg ccatcccatt tattgaggtt catttaagta
     2341 acattttttc ccgtgaaact tttcgtcacc attcctattt ctcagatatt gccgttggtg
     2401 tcattagcgg tttggggacg aaagggtatt tactggcctt acaagcgatt atcaaagaat
     2461 taaagtagag agaaaaaaca aatggatatc agaaaaatca gaaaacttat tgaactcctg
     2521 gaagaaactg gtatttcaga gattgaaatc aaagaaggag aagagtcgtt aagactaagt
     2581 cggcatagta atatagtagc agaaacagct ccacaaattc attatgtggc tccttctgct
     2641 gtgaagcaaa cggcctctgc tccttcctcc aatacttcta ccaccgagtc tcatgttatt
     2701 gaaaataaac aagttacttc agcctcctca ggtcataaaa ttcgttcacc aatggttgga
     2761 acaatgtaca cagcgccatc tccagaaagc ccaccttttg taacagtggg acaatctgtt
     2821 aaagcaggag atactctatg cattattgaa gcaatgaaaa tgttcaatga aattgaagcc
     2881 gatcgtgctg ggaaaattgt tgaaatcttg gtaaaaaacg gggatcctgt tgaatatgac
     2941 caggccttgt ttattataga atagagaggc ctgtttatgc tcagtaaaat agttattgct
     3001 aatcgaggcg aaattgcgct tcgtatactg cgtgcttgta aagaacttgg cattcagact
     3061 gttgctgttc actctgatgt agacaaagat ttattgcacg ttcgcctggc tgatgaaacc
     3121 gtatgcatag gccctgcacc tgcccaaaaa agctatctca atattcctgc aattatatct
     3181 gcggcagaaa ttactgatgc agtagcgata catccaggtt atggattttt atcagaaaat
     3241 gccgattttg cagatattgt tgagcaaagc ggtttccgtt ttattggccc acgcggcgac
     3301 tccattcgtc ttatggggga taaagtttcc gcgattgctg ccatgaaagc ggcaggagta
     3361 ccctgtgttc ccggttcaga cggtccttta ggagatgacg acaacaaaaa tctcgagttg
     3421 gcgcgaaaaa ttggttatcc aatcattatc aaagcagccg gcggcggtgg tggacgtggc
     3481 atgagagtcg ttcatagcga atccaattta cttagtgcta ttgcgttaac ccgaagcgaa
     3541 gcaaaagccg ctttcaataa cccgatagtt tacatggaaa aatttctgga aaatcctcgc
     3601 catgttgaat tccaagtcct tggtgatggg aaagggcatg ctatacattt gggtgagcgt
     3661 gattgctcga tgcaaagacg acatcaaaaa gtcgtagaag aagctccggc tccaggaatc
     3721 actcctgaat taagagaaga aattggcgcg tcagtgatta aagcttgcaa agagttacaa
     3781 taccgaggtg ctggaacctt tgaattttta tttcaagatg gttgttttta tttcatcgaa
     3841 atgaatacgc gcattcaggt tgagcatcca gtaactgaaa tgatcactgg gattgattta
     3901 attaaggaac aaatcaaaat tgccagcgat attcctctga cattaaccca aaaagatatt
     3961 aaattacgcg gccatgctat tgaatgccga atcaatgcgg aagatccaag gaattttatg
     4021 ccctctcctg gaaccataaa attacttcat caaccaggag gcccaggcat tcgttttgat
     4081 tctcacatct acagcagcta tgttgttcca cctaattacg attccatgat aggaaaatta
     4141 ataagttatg gggcaacaag agcagaagcg attgccagga tgcgtaatgc ccttgatgaa
     4201 attatcattg atggcataaa gacaaatatt gaattacacc aacgtattct tcatgacaaa
     4261 tcttttatgg aaggtggcac aaacattcac tatctagaaa aaatgctcaa ggattcatag
     4321 cgtgtggttt caactaaaaa tagaacattg tcctaatgac aagattgaag aaataaccga
     4381 ggaactcgaa gaatgcggtg ccttgtccat cacactcaca gacaaaaatg acaaccccgt
     4441 tcttgaacca gagccaggga caacgccttt atggcctgaa gtaatcattc atgccctatt
     4501 tgcccaagca gaagaggcgc aatacgcaag agaacaattg gttgctaaaa gaccatctct
     4561 gcattgcagt ttggaactgc tcgctgataa aaattgggaa agagcctgga tggatgattt
     4621 tcgacctcaa cgttttggta accgcttatg ggtctgtcct acttggctcc ctcccccgga
     4681 acctgatgcg gttaatttaa tattagatcc tgggttagca tttggtacag gcacacatgc
     4741 gacaacctcc ctatgcctaa cttggctgga gcaggctgat ttaaaaaata aatcaataat
     4801 agattatggt tgtggttcag gaatactctc actcgcggca atcaagctag gagctaaaca
     4861 tgtctatgct gttgacatag ataatcaagc cttacaagcc acacaaagta atgcgcatgc
     4921 caaccatatc actgagagcc aactctctat cagcttcccg gaagcattgc aaaatcctgt
     4981 gcatttagtt atcgcaaata ttttgttggc tccattaatc agtttaaagg aacgttttca
     5041 tcaactgctc ccgtcaggcg cgcatttggt aacatcagga attctggaag aacaggcccc
     5101 tttgctgatt gatgcttatg attccgcatt cacccatatt gcaactgaat attgtgaggg
     5161 atggtcgttg ctggttttta caagcaaata ataactatat cactaaggta tatgtaaatg
     5221 gcgaaaaaac aaatttactc ttctttcaag ccacgacgag cactactgag tgtttccgat
     5281 aaaagaggaa taagagaact cggtcaagtc ttacatgacc aaggagtgga attgatagcc
     5341 actggaaaca cagctgccat attaagagaa cataaattac ccgttaccga tgtcagtgag
     5401 tgcacaggat ttcccgaaat aatggatgga agagtcaaaa cccttcatcc agccattcat
     5461 gctggtttat tagcccgcgg agaagaagac agcccagttt taagacaaca tggaataaaa
     5521 cctattgatt tactgattgt caatttatac ccctttgaac aagtcattaa ccacccggac
     5581 tgcgatttta ataaggccat tgaaaacatt gacattggtg gaccagcaat ggtgcgagcg
     5641 gcagctaaaa atcatgccca tacttatgtc atagttgatc caaatgatta ctcaaaatta
     5701 attcattatt tacaagatca gaaagcacct tcccattgga attttgcgtt agctaaaaaa
     5761 gcatttgccc atactgcagc ctacgatgcc gcaattgcaa attatttaac tactttggat
     5821 aatgattatg tcccaactgg atttcccgac atactaacct gccaatttaa taaaattact
     5881 gatcttcgtt atggtgaaaa cccccatcag caagctattt tttatgctga taaaaattca
     5941 catccaggct ctctaagtac agcaacctta ttacagggaa aacaattatc ctataataat
     6001 attcttgatg ccgatgcagc tctcgattgt gtgaaatcat tttccaatga aaagtcggtt
     6061 tgcgtcattg taaaacatac caacccctgt ggcattgcgc tatccgacac atcacttgat
     6121 gcttacttaa aagcctttca aagtgatccg atatccgctt atggtggaat tattgctttc
     6181 aatggaactc tggatagcga tacggcaaaa gcaatattag aaaaacaatt tgttgaagtg
     6241 attattgcac ctgatgccaa tgaagaagca aaaaaaattc tggcaaccaa agaaaacact
     6301 cgtgttcttc taaccggttt ttggcaacaa ggtaataatt ttagattaag tatgaagaaa
     6361 gttgatggtg gtctattagt acaagaacac gattctcttt ctctggaatc atgtgagcta
     6421 caaaccgtta cccagataaa acccactgat gaacaactac aaaatttaat gttcgcttgg
     6481 ttagcagcca agcatgtcaa atctaatgcc attgtatacg ctaatgattt gaccactata
     6541 gggattggcg gaggacaaac cagtcgagta atgagtgctc gtattggttt gtggcaagca
     6601 gagcaaatgg ggtttgatcc caaaggcgct gttatggcct cagacgcatt tatccctttc
     6661 cctgatacca ttgaaatagc agcgaaggct ggtatatccg caattattca accagggggc
     6721 tctatcagag atgaaaaaat catttcttgc gccgaccaac acaacatagc gatgattttt
     6781 acaggagtgc gacattttaa acattaatgt caagcatgta ttaattctaa gcttgactaa
     6841 cttgaacaaa gagtcgtata taacgtatca tcttcttttt aattgaggct ttttgattag
     6901 cataaatgga ccttttcttg taggactgat ggacttgata ttagaacaag gagcaagtat
     6961 ttctagaagc agattttacc tatagaataa ataagaatta taggaatact tactaatcaa
     7021 ctagcaatca cgcaaaagac aaaaatgcta ctgaaagtct aatgcatcac tgaaacccat
     7081 ggagtaatat aatgacaact gagcaatacc cgtcctcact tgtcaatcgt cttgcaatca
     7141 cagagcctgc gttggttcca agtggatatt atcgttcgaa attatttatt gccccatttt
     7201 ctacaaatgt tttagttgca gcggccggac caatactgtc tttattggaa agactttgtt
     7261 taagtccttc tttacctcca gtagaggata taagagaaaa tatacagcat gaattacgcg
     7321 cctttcacag taaattagac gcttctaaat atccgttgga tattattagc attgctcaat
     7381 atttattatc agctaccatt gatgaaatat taggtaaaag ttatctaagg gtctataacc
     7441 tgacgacaga gttcaaatca tttactccct tatcaagtga tggggcacaa ccccagcagc
     7501 gtttttttga aatattgaac tacattaaag agaggccaaa tcaatttctc gatttaattg
     7561 aattggccta cttttgcctc attgccggat ttgagggtga gtaccatctg aaagcagacg
     7621 ggcgacaatg tcttgataat ac
//
LOCUS       DACVWI010000141         7552 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.141, whole genome shotgun sequence.
ACCESSION   DACVWI010000141 DACVWI010000000
VERSION     DACVWI010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7552
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.141"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            52..3402
                     /gene="sdbA"
                     /locus_tag="JBH85_11140"
     CDS             52..3402
                     /gene="sdbA"
                     /locus_tag="JBH85_11140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdbA"
                     /protein_id="HAU0946758.1"
                     /translation="MHKKYNYYSLEKEKKTFWQHILDILKAPFRLPGWVVSFFLARNI
                     THVALNPNNIPQQRLIHLTKTSNRPEDDIVVINFKKRPPHKWFNDTLIKIANTIAALP
                     FVTPRLRTRLHYDNENDINHVNKLLAEIDALVQGKSKQKYCKGRAFDWSKIHLKGLEF
                     LDPKMRGYVYEQLHEKYGYVSYTTKRKPNIEFFTLKTPDGSELDSVQVTGEDEEKKPM
                     GERKFIITCIARDQNFINWIKDLNYTAKNLGATAISFNYRGVDYSRGLVWTENNLVDD
                     ILAQVQRLISLGADPKNICLDGMCIGGAVATIAAAKLHEKGMKVKLNNERSFTSLSSL
                     VFGFIVPELQTANWWSPLTYGRFLLAGVVYALLTPLIWLAGWPVDVTKAWNRIPAQDK
                     MYSVVRDKDNGLYDGVIHDHFCSIASLVDSQINSILYKLSTDQPLTEEEKQILCDDQF
                     SHHFKPSQSVLKNPKYKGPHFISRQDLVAELGHREEYTNHDYFLDRLREKFQLDRATR
                     PVALAEDGEKDIDGISSQLSNNKERPLIIASSGGTGHISATHGIINDLQSKTDNVVIT
                     QHHAELYKNKPFSITSVLIRIGVWFTSLPILEDILKGVMRFIGYPVLPSSSIFWDQMS
                     KIQQSETKKENGIETGRTRPYVDMLLDIYPEGYEYTAFNNATHLTSSIEDIQTMISFK
                     GHVEEDNRNIVYQNILQRLMHAAKQNTPYTRLISTQALSLGAICDAVKYYNTVFLPVY
                     NAERGTSYQPIAIDQYMTDLPSLGCIHFMNNLEELTSEQRQLMEIHAVNMSEPFKEAH
                     FGKEQGFKAVHNIDPRNNPMIRNAFKDPSLTKYLDKTQSFDLHFNVYKKEKQNALPVL
                     NGKEKITIKPHAKIASIMIGSLAANASADYAKYLLNQGYEHIFLFGGLNDSIAARIDQ
                     IINSYPAPTRDEIRKKIILLGNQSDVEMAPIMTRSNCVVIRGGGLSVMEQMAMPIMDD
                     KIVLLHHEDNEEGPLTSGLSWEDGNSDKLIEYLSEKGAYAKKTSPGLCSGHLHEAEKS
                     FEKKYHGQLKSTETKKKVDLTIPQQETYSLKKEWDRKTGYTESGHILSHQHRFFNTIP
                     EVREPFCSKEDLHHNELSSQSLVSVSAG"
     gene            3560..5059
                     /gene="legG2"
                     /locus_tag="JBH85_11145"
     CDS             3560..5059
                     /gene="legG2"
                     /locus_tag="JBH85_11145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegG2"
                     /protein_id="HAU0946759.1"
                     /translation="MINKSRLLSLIACFNNREINMPKILDSHAYREMENELNTLFEQI
                     YKHGKNDRTAITLQAQQFLDNLSESIRDHSRLLLTKIAREELIYFKEKKPGDSREKFQ
                     NIDKMSDYFNNLSALINFSVMQQEDPTLRAFYYDMYIQLMNFCYLKGDLFGAGAIYTG
                     LIANNLPNSIDWKQLSSESRLIFKDCEEKFKRLFNLSTTYNAHTDLKRQFKTALIPAL
                     PSLLTVQIYTKDSYDNSVSDFERIQDKLRQLDIEHNRFLNQLQNDRSTWSKAYYDYMS
                     NVYLPQSIFEYTTLLREYEELVTTHGGPIAKQFHKDKNSEPLVNFVESTLSENQSVLK
                     VSPFQNERIVEMLSEIDVVKSECSSPAVFDDLSWKLREMNCTLVKAKSIGDYTSKIFA
                     NLDTPYMEENTDEDPKPVLVEELQTDDVYQLHHSGMKLMRELEQAIEDHKPKVIYHCS
                     GEANYGFFKEARRRGRHLSREPMDIEVMDMDVMDYDENDLRDQTVMITV"
     gene            complement(5125..7347)
                     /locus_tag="JBH85_11150"
     CDS             complement(5125..7347)
                     /locus_tag="JBH85_11150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0946760.1"
                     /translation="MSTESFRILVIDDNPAIHQDFMKILNVSKNSVLLNKFDAELFDD
                     ETEQLGISLPEFEIDVATQGIEGIEKVKRSLEEGRPYPLAFVDIRMPPGIDGIETIKR
                     IWAIDPQIQIVICSAYSDYSWESTVNTLGLSDNLLVLKKPFDVIAVRQLASALTQKWV
                     LARETQKHTEFLNQLVEERTESLQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFV
                     KLWNIPESIMKKTSESQLIQYMSTQLLNSEQHAQHVKEFSIHIDDSSIQIYHFRNGKV
                     VECCSKPHRVGPQTVGRVWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEH
                     AISSYARHKMKFAILFFDLDRFKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARL
                     GGDEFVMLFQSFNSEEQIAGVAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTV
                     NTLLSNADMAMYQAKFRGGNQFSFYTEKLNKKTNQQFQLELDLQKAIIHHEFFLLYQP
                     QFTVNTHEIRSMEALIRWNHPQKGIILPLDFIPTAESSGLIVPIGEWVLRETCKQIGT
                     WRTMGLPEIRVACNVASKQLRQRDFPAMVEDLLKEYSVKPHCLELEITENVIIDKEIQ
                     RTIKKLKSLGVLIILDDFGTGNSSLNLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDA
                     IIAIAQSMNFNIIAEGVETQNQLKFLKKRRCNDIQGFLMSKPIPSEEIEKLLQGNRTK
                     "
     gene            complement(7350..>7552)
                     /locus_tag="JBH85_11155"
     CDS             complement(7350..>7552)
                     /locus_tag="JBH85_11155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HAU0946761.1"
                     /translation="IQKDNLDRIFSFGFTTKKNGHGFGLHCSAIYARDLGGTLYAESN
                     GNGKGAQFVLDLPINPKTLSTR"
BASE COUNT         2335 a         1392 c         1504 g         2321 t
ORIGIN      
        1 ggattgcaat agatagtgcc actttgattt aattaatttt tagaagttaa tatgcataaa
       61 aaatacaact actacagtct tgaaaaagaa aaaaaaacat tctggcaaca tatactggat
      121 attctgaagg ccccatttag gctacctggt tgggtcgttt cttttttctt ggcacgaaat
      181 attactcatg tggcattaaa tcctaataat attccgcaac aacgtttaat acatcttact
      241 aaaacaagca atcgtccaga ggatgatatt gttgtcatta atttcaaaaa acggcctcct
      301 cacaaatggt ttaatgacac gctgattaaa atagccaata ccattgcggc tcttcctttt
      361 gtaacaccaa gattacgtac aagattacat tacgataatg agaatgatat caatcatgtg
      421 aacaagttgc ttgccgagat cgatgcgctt gttcagggca aatcaaaaca aaagtattgc
      481 aaaggcaggg cattcgattg gtcaaaaatt catctaaagg gattggagtt cctggaccct
      541 aaaatgagag ggtatgttta tgaacaactg catgaaaaat atggttatgt ctcatataca
      601 acaaaacgca aacctaatat tgaatttttc accttaaaaa ctcctgatgg atctgaattg
      661 gattcagtgc aagttacagg tgaagacgaa gaaaaaaaac caatggggga gcgcaagttt
      721 attattacct gtattgcgcg ggatcaaaat ttcatcaatt ggataaagga tttaaactat
      781 acggcaaaaa atctgggcgc tacggccatc agcttcaact acagaggcgt ggattacagt
      841 cgcggtcttg tctggacaga aaataatctt gtcgacgata ttctggctca ggtgcaaagg
      901 ctaattagcc ttggtgccga ccctaagaac atctgccttg atggtatgtg tataggtggg
      961 gcggtagcaa caattgctgc agcaaaactt catgagaagg gcatgaaagt caagttgaat
     1021 aatgaacgct cttttacttc tctttcttct ctagtatttg gttttattgt acctgaattg
     1081 caaacagcaa attggtggag ccctttgact tatggtcgct tcctactggc cggtgtagtt
     1141 tatgctttac tcacgccttt aatttggctg gcaggatggc cagttgatgt gaccaaagcc
     1201 tggaatagaa tacctgctca ggataaaatg tattctgttg tgcgggataa agacaatggc
     1261 ttgtacgatg gagtaattca cgatcacttc tgttccattg cgtcgttggt tgattctcaa
     1321 attaattcta ttttatataa attatccact gatcagccgc ttactgagga agaaaaacaa
     1381 attttgtgtg atgatcagtt ttctcaccat tttaaaccaa gtcaaagtgt tttaaaaaat
     1441 ccaaaataca aaggcccgca ttttatttcc cgacaagatt tggtagctga gcttggtcat
     1501 cgagaggaat ataccaatca tgattatttc cttgaccgct tgcgggaaaa atttcaattg
     1561 gatcgcgcaa cacggccagt ggctttggct gaagatgggg aaaaggatat agatgggatt
     1621 tcatcgcaac tatctaataa taaagagcgt cccttaatta ttgccagcag tggaggaaca
     1681 gggcatatct ctgccacgca tggcatcatt aatgatttac agagtaaaac agataatgtt
     1741 gtcattacgc agcatcatgc ggaactctac aaaaacaagc ccttctcaat tacatctgtt
     1801 ctgattcgta ttggtgtttg gtttacctct cttcctatcc tggaagacat actgaaagga
     1861 gttatgaggt ttatcggata tcccgtttta ccgagctcct ccatcttttg ggatcaaatg
     1921 tctaaaatac agcagagtga aactaaaaaa gaaaatggaa ttgaaaccgg cagaacccgt
     1981 ccttatgtgg acatgctgtt ggatatatac ccggagggat atgaatacac ggcattcaat
     2041 aacgcgactc acttgacttc cagtattgaa gacattcaaa cgatgataag cttcaagggg
     2101 catgttgaag aggataacag gaatatagtc tatcaaaata tattacaacg ccttatgcat
     2161 gcggcgaaac agaatactcc ttacacaaga ttaatttcca cacaggcgct ttctttggga
     2221 gctatttgcg atgccgttaa atactacaat acggtatttt tgcctgtata caatgctgaa
     2281 agagggactt cctatcagcc tattgccatt gatcagtata tgaccgattt gccttcactg
     2341 ggttgtattc attttatgaa taatttggag gagctcacat cagagcaaag gcaattgatg
     2401 gagatacatg cagtaaatat gagtgaacca tttaaagagg cgcattttgg caaagaacaa
     2461 ggctttaaag cggttcataa tattgaccca cgcaataacc ctatgattcg caatgccttt
     2521 aaagaccctt cattgacaaa atacctggat aagacccagt catttgattt gcactttaat
     2581 gtttataaaa aggaaaagca aaatgcactg ccagtactga atggtaaaga aaaaattaca
     2641 atcaaaccgc atgctaaaat tgcttccatc atgataggct ctctggcggc aaatgcttca
     2701 gctgattatg cgaagtattt attgaatcag gggtatgagc atatttttct tttcggcggg
     2761 cttaatgatt ccattgccgc acgtatcgat caaatcatca attcttaccc tgcccccacg
     2821 cgtgatgaga tacgtaagaa aattattctc ctggggaatc aatctgatgt tgaaatggca
     2881 ccaataatga ccagaagtaa ctgtgtggtt atccgtggag gtggtttaag tgtcatggaa
     2941 caaatggcca tgcccattat ggatgataaa attgtattat tacatcatga agataatgaa
     3001 gagggccctt taacatctgg tctcagttgg gaagatggga attccgataa attaatcgag
     3061 tatctgtctg aaaaaggggc ttacgctaaa aaaacatcgc ctggtctgtg ttctggtcat
     3121 cttcatgagg cagaaaagag tttcgaaaag aaatatcatg ggcaactgaa gtcgacagaa
     3181 accaagaaaa aagtagattt aaccattcct caacaagaga cgtattctct gaaaaaagag
     3241 tgggatagaa aaactggata tactgaatct ggacatatac tatcccatca gcatagattt
     3301 tttaacacga tacctgaagt aagagagcca ttctgttcta aggaagattt acatcataat
     3361 gagctttcca gtcaaagttt ggttagtgtc agtgctggtt gaggaaatat gcctttaatc
     3421 atcgaagctc gtttgattca ggtcagtact agtttgtgat tgcaataagt actgattgat
     3481 gcaattccaa aaagcgagat tgtttgttaa taacacatgt cgaatttttt atgttatttt
     3541 agtataaccc aattactttt tgataaataa aagtcgtttg ttgtcattaa ttgcatgttt
     3601 taataataga gaaatcaata tgcctaaaat tttagatagc catgcatatc gcgagatgga
     3661 aaatgagctc aatactcttt tcgagcaaat ttataagcat ggtaaaaatg acagaaccgc
     3721 gattacatta caagctcagc aatttttaga taatttgagt gaatccataa gggatcattc
     3781 ccgcttattg cttaccaaaa ttgccagaga agaactcatt tattttaagg aaaagaaacc
     3841 tggggattcg cgagagaaat ttcaaaatat cgataagatg agtgattact ttaacaattt
     3901 atctgcattg attaatttct cggtgatgca gcaagaagat cctactctgc gggcttttta
     3961 ttatgatatg tatattcaac taatgaattt ttgctatctt aaaggggatt tgtttggagc
     4021 gggtgcaatt tatacaggtt taatagccaa taacctccct aactctattg attggaagca
     4081 attgagttcc gagagtcgct tgatttttaa agattgtgaa gaaaaattta agcgattatt
     4141 taatctctca acgacataca atgcgcacac tgatttaaaa agacaattca aaactgcttt
     4201 gatacccgca ttaccgtcac ttctcacggt tcagatatat actaaggact cttacgataa
     4261 ctcggtcagc gattttgaaa gaattcagga taagttacgt cagttggata tagaacataa
     4321 tcggtttctt aatcaattac aaaatgaccg ttcaacctgg tctaaagctt attatgatta
     4381 tatgagtaat gtttatctcc cgcaaagcat attcgaatac actactctct taagagagta
     4441 tgaagaactt gttacaacgc atggtggccc tattgcgaag cagtttcata aggataagaa
     4501 ttcagaacct ctggtaaatt ttgttgaatc gacgctatca gaaaatcaat cagttctcaa
     4561 agtatctcct tttcaaaatg aaagaattgt tgaaatgctt tccgagattg acgtggtaaa
     4621 aagtgagtgc tcaagcccag ctgtgtttga tgacctctcc tggaagttga gagaaatgaa
     4681 ttgtactttg gtaaaagcca aatctattgg tgattatact tccaaaattt ttgcaaatct
     4741 tgatactcca tacatggaag agaatacgga tgaagacccg aaaccagtgc ttgtagaaga
     4801 gctgcaaacg gatgatgtgt accaacttca ccatagtggt atgaaattga tgcgtgagct
     4861 cgaacaggct atagaagatc ataaaccaaa ggttatttat cattgttcag gtgaggcaaa
     4921 ctatggtttc tttaaggaag ccagaaggag ggggagacat ttgagtcgag aaccaatgga
     4981 tatcgaagtc atggatatgg atgtgatgga ttatgatgag aatgatttac gtgaccaaac
     5041 cgttatgatt accgtgtaat ttgtcttgca tctataattg caatccatcg gatagctctt
     5101 atagatgcca atgcgatttt tatcttattt tgtcctattt ccttgcagaa gtttttctat
     5161 ttcttctgag ggtataggct tactcattaa aaagccctga atgtcattac atcgcctttt
     5221 cttgagaaat ttgagttggt tttgcgtttc gactccttcg gcgatgatat taaaattcat
     5281 gctttgtgcg atagcaataa tcgcatcaat gatcgcttca tctcctggcg attttgaaat
     5341 attctgaatg aatgattggt cgattttaag actatcgaca gcgacctgtt ttaataaatt
     5401 caggctggaa tttcctgtgc caaaatcatc caaaataatc aacacaccca gtgatttcaa
     5461 ctttttgatc gttctttgta tttctttatc aataatcaca ttttcagtaa tttccagctc
     5521 caaacaatgg ggtttaactg aatattcttt taaaagatcc tccaccattg cagggaaatc
     5581 tcgttgtctt aactgtttac ttgctacatt acaagcgaca cgaatttcag gcagccccat
     5641 tgtgcgccag gtaccaattt gtttacaggt ttcccgcaaa acccactccc ctatcggtac
     5701 gataagccct gaactttcgg cagtaggaat aaaatccaag ggtaaaataa tacctttttg
     5761 cgggtgattc caccggatta atgcttccat ggaacgaatc tcatgagtat taactgtaaa
     5821 ttgaggctgg tagaggagga aaaactcatg atggataatc gctttttgca agtctaattc
     5881 cagctgaaat tgctggtttg tttttttgtt gagtttctct gtataaaatg agaattggtt
     5941 accgccgcga aattttgcct gatacatcgc catatccgca ttactgagta aagtgtttac
     6001 tgttttgcca tccgttggat aaacgcttat accgatgctg acatgaatat tgatgtctct
     6061 ttccgcgata tgaaatggtt tttgaaagga tttgaggatt ttttgagcta ctccggcaat
     6121 ttgctcttca gaattaaacg attgaaaaag cattacaaac tcatccccac caagtctggc
     6181 gagagtatct tcttttcgca ccaaagatcg taatcgttta gcaacggcac acagtaattg
     6241 atcgcctgct tcatggctca agctgtcatt gatcatttta aagcggtcca agtcaaaaaa
     6301 taatatggca aatttcattt tatggcgggc atagctactg atagcatgtt caatacgatc
     6361 aattaataac aagcgattgg gtaaattggt taatgcgtca tgagtagcct gatactccag
     6421 tttttccttt aatcgcgttt gttcagtgat gtctctgaag ctccatacac ggcctactgt
     6481 ttgcggacca acgcgatgcg gtttggaaca gcattcaact actttaccat ttctaaaatg
     6541 ataaatttgt atactggaat catcgatgtg aatagaaaat tctttaacat gttgggcatg
     6601 ctgttctgaa ttgagtaatt gcgttgacat atactgaatg agttgggatt cactggtttt
     6661 tttcatgatg gattcgggga tattccacaa tttgacgaat tgagagttgt aatcaacgat
     6721 tttcccttgt aaatcaacaa ccagaatgcc atccgaagag gactcaatcg ttgcccgtaa
     6781 taatgagaag gattgttgta aagattcggt tcgttcttcg accaattgat ttaaaaattc
     6841 agtgtgtttt tgagtttctc tggcaagtac ccatttttgt gtcaaagcac ttgccagctg
     6901 tcttactgca atcacatcaa agggcttttt tagcaccaat aaattatcac ttaaacccaa
     6961 ggtatttact gtgctttccc atgagtagtc ggaataggca ctgcatataa caatttgtat
     7021 ttgcgggtca atggcccaaa tgcgtttgat ggtttctatc ccatctatcc ccgggggcat
     7081 tcttatgtca acaaaagcga gtgggtatgg ccggccttct tcaagtgagc gtttcacttt
     7141 ttctatgcct tcaatgcctt gagtcgctac atcgatttca aattcaggca aagaaatccc
     7201 aagttgttct gtctcatcat caaacagctc ggcatcaaat ttatttaata atacagagtt
     7261 cttgctgaca tttaagattt tcataaaatc ctgatggatt gccgggttgt catcaatgac
     7321 cagaatgcga aaagattcag tactcatttc tacctcgtac tcaaggtttt gggattgatg
     7381 ggcaaatcta atacaaattg agctcctttg ccattgccat tactttcagc ataaagtgta
     7441 ccacccagat cccgtgcata aattgcagaa cagtgcagtc caaagccgtg accatttttc
     7501 ttggttgtaa atccaaaaga aaaaattcga tccaggttat ctttttgaat tc
//
LOCUS       DACVWI010000142         7406 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.142, whole genome shotgun sequence.
ACCESSION   DACVWI010000142 DACVWI010000000
VERSION     DACVWI010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7406
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.142"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            239..1492
                     /locus_tag="JBH85_11160"
     CDS             239..1492
                     /locus_tag="JBH85_11160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946762.1"
                     /translation="MSLEIYTWKNGSKGLGFTKPVKSMLFGGNVGHAAVELTFPADAK
                     GDELAKKYQDVPGLSISKRTEIVPEKQEDGSYKPKEQVVYFVYFSWWPGHTNGHHINS
                     HREDLESEWRHEPAPKIKPEIQKHLYGENTPAANKTNVTGILISEKTISKVKEFSHQN
                     IKETITIENDPAYQQLKAKEAALQTELQQLIYKGKIYEQELAKSALEQRQPNKDLGLT
                     DAEIVRLAEINKELKRVVEQIKLCQMDFEERYLSVGEPPSSVIRIPTTHDYNAPTFAL
                     DTAGILEKMASLAQSTTAYSFYKFNCSTSATQVVKAGISDELKNIMKTDGFNVDKASQ
                     TTIATPTSFSHFSQQVQTELILLNTNQALVEQQRAKTANTSGPLTTTTQSFKQKFQEA
                     VKGKSEEIVREQDESEENRMDLTMS"
     gene            1779..2783
                     /gene="ravE"
                     /locus_tag="JBH85_11165"
     CDS             1779..2783
                     /gene="ravE"
                     /locus_tag="JBH85_11165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavE"
                     /protein_id="HAU0946763.1"
                     /translation="MEHCMPKTKYALPPVVLYESHADRATSDFLIKQLPDLKKTGYTT
                     ICVDGMEPGASLEENISMMKILIKIQIKKLSELPLEHPEYEQGIEKLRSVVAKLELFE
                     AMKEQGFKLGGIDLPVSEQLKEKSLNSIRREQTLTDNTLGHVKENDGGVVVVLGFGHC
                     IFQQMIKEQDENADQYLWYHVHNPDNETQAYKELVKSYTKKGLSTYFPLGVNIFKSSD
                     KELDTDFWNKVSANCYNYDPKALETSTASILKSLLGPEVSAHLRTDGHHHVDALISLE
                     TVEKTHQVKSSDFLRSLSKTLGDIHFEVAKIKTKDQVIIRGINEPEVAEQISKLSKKM
                     "
     gene            2903..5152
                     /gene="katG"
                     /locus_tag="JBH85_11170"
     CDS             2903..5152
                     /gene="katG"
                     /locus_tag="JBH85_11170"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HAU0946764.1"
                     /translation="MFKRTIPLFAAFTLAISPSVFPNYAYAQEDKPKTNQYWWPKMLD
                     LSPLRQPNATSNPMGEQFNYAEEFNSLDLNAVIEDLKKLMTTSQDWWPADYGNYGPLF
                     IRMSWHAAGTYRIYDGRGGANGGFQRFAPQNSWPDNANLDKARRLLWPIKQKYGRKIS
                     WADLLVLAGNVAMESMGFKTIGFAGGREDAWEAININWGPEGKWLESKRQDKDGKLEK
                     PLAATVMGLIYVNPEGPNGVPDPLAAAEKIRETFGRMAMNDEETVALIAGGHAFGKTH
                     GAASGKYLGPAPEAAGIEEQGFGWKNSYGSGKGKDTITSGLEGAWTVTPTHWSHNYLQ
                     NLFNFNWVKTKSPGGAIQWVPENSNASSMVPDAFDPSKRHAPVMLTTDLALKFDPVYS
                     KIAKRFLDNPKEFDDAFARAWFKLIHRDMGPRSRYLGSLVPKEIMIWQDPVPPVDYKL
                     VDANDIANLKGKILNSGLSTSELVKTAWASASTFRGTDMRGGANGARIRLSPQKDWPA
                     NDPQELAKVLKTLESIQNNFNNAQADGKKISLADLIVLGGNAAIEQAAKQAGYDIIVP
                     FMPGRTDATQGMTDVKSFEVLEPKADGFRNYFDKSNNMSPPEMLVEKASLLKLSVPQM
                     TVLVGGMRVLNANTGQNQYGVFTDKPGTLNNDFFVNLLSMSTEWKKSSETEGIYEGYD
                     RKTGKLKWKATSVDLIFGANSELRAVAEAYATDDAKEKFIQDFVNAWVKVMTADRFDI
                     KAANTNINS"
     gene            5304..5498
                     /locus_tag="JBH85_11175"
     CDS             5304..5498
                     /locus_tag="JBH85_11175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946765.1"
                     /translation="MPSLELRVIRLYSISNIRHFVLEKIWFNPIFCMRLSCSPIRDNR
                     FKIDLLPKLINWFQAKALTF"
     gene            5621..6205
                     /locus_tag="JBH85_11180"
     CDS             5621..6205
                     /locus_tag="JBH85_11180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HAU0946766.1"
                     /translation="MRRFLMKNKLLPNLIIITLAATIYANSINVQAKQNDQIQNSNEQ
                     LTQDPFDTDPFFQSHDDVLLQIHKMQQAMDQFIKSQFSQMQNTLANDPHHNPFGSAKN
                     IQITENKDEIIYKIKLPQGSDSKVDITVKNGQLVLSANVTQKITREQDNNKSVSFSQS
                     NYMQSFPLPQSYDPKSMVTKMKDSNLIVTFKKNS"
     gene            complement(6410..7363)
                     /gene="ceg5"
                     /locus_tag="JBH85_11185"
     CDS             complement(6410..7363)
                     /gene="ceg5"
                     /locus_tag="JBH85_11185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg5"
                     /protein_id="HAU0946767.1"
                     /translation="MISQKEALALLNKYEKHLNELQNIITTSYQNLLRCDAQIIPNAL
                     AALKAIANNTQFVPVVATSGMSSIKALNSDPQIALKELLVNDFFKDHFQKMCIHYAKD
                     KPELLTNLQNFHACVSQEKIIIYKAKNGELALKFPTQEWRDRFIQKMGGISHFASSDK
                     FNANKECPQTYPENPTTLYLSTYTAKNGELAVVFPNKEIRQNFLTLFRHASSATWSIY
                     EGQDAVYFNDKNLHTPGYNFGINAPACVSQSSNAAHADVRYAARILGQALRNPNNTCF
                     FNRLPEELINKIISLSTDNEVLAAEDAISLVQPNLGKPQLK"
BASE COUNT         2435 a         1446 c         1473 g         2052 t
ORIGIN      
        1 gcattggcaa gaatagttaa tccattttgt ttatactgag aaatattccc tcttatcaga
       61 tcaggttttc gctcctattg acgtttttca taagtcttga tgaatcttta aagattcagc
      121 gttattcctg ttaggaatgt atgatgctga gattccctgc acatataagc cccctttaat
      181 ttaatttcta atcaattagc tcataataaa accatgttag ttgtgtggag actttattat
      241 gagccttgaa atatatacct ggaaaaatgg ttccaaaggg ttgggattta ccaaaccagt
      301 taaatccatg ttatttggtg gcaatgttgg ccatgctgcc gttgaattaa catttccagc
      361 tgatgcaaaa ggagatgagt tagcgaaaaa atatcaggat gtgcctggtc tttcaatcag
      421 taaacgcaca gaaatcgttc cagaaaaaca agaagacggg agttataaac ccaaagaaca
      481 agtcgtctat tttgtctatt ttagctggtg gccaggacat accaatggtc accacattaa
      541 cagccacaga gaagatttgg aatcagaatg gcgtcatgaa ccagctccca aaattaaacc
      601 tgaaatacag aagcatttat acggagaaaa tactcctgcc gctaataaaa ccaatgttac
      661 gggaatatta attagtgaaa aaacgatttc caaagtaaaa gagttttccc atcaaaatat
      721 taaagaaact attacaattg aaaatgaccc ggcttatcag caattaaaag ctaaggaagc
      781 ggcattacaa actgaattgc aacagttaat ttataaagga aaaatttatg aacaggaatt
      841 ggccaaatct gcccttgaac agcggcaacc taataaagat ctaggtttaa cagatgctga
      901 aattgttcgt cttgctgaga ttaacaaaga actaaagaga gtggttgagc aaatcaaatt
      961 atgtcaaatg gattttgaag agcggtatct gagcgttgga gaacctccct catcagtgat
     1021 cagaataccc acaacccacg attacaatgc accgactttt gcccttgata cagcaggaat
     1081 ccttgaaaaa atggccagtt tagcgcaaag cacaaccgcc tacagcttct ataaatttaa
     1141 ttgttccact tcagcaacgc aagtagtcaa agctggcatc agcgacgagc taaaaaatat
     1201 catgaaaacg gatgggttta acgtagataa agcttctcaa accaccatcg ccacacctac
     1261 atcgttcagt catttcagtc aacaagttca aacggaactg atacttctta atacgaatca
     1321 agcgcttgta gaacaacaaa gagcaaaaac agcgaatact tctgggccac tgactacaac
     1381 cacacagagc ttcaaacaaa aatttcagga ggcagtgaaa ggaaaatcag aagaaatagt
     1441 tagagaacaa gatgagtctg aagaaaacag aatggattta accatgagct aatgttttca
     1501 tctttcccaa agtattaatc ggttgagttc tgcataacaa caatgaacaa gataaactca
     1561 accaataact acagcacaaa ttggcaagta aagtaagtta gttcaaaatt tcaacaagca
     1621 tccttcagaa aacaaataag aaattcattt tcttactacc ttattctcca aatcgcaatt
     1681 caatcagaaa agttattctc cagacaacca caccccaata tgttgtccat tatatgagca
     1741 ttgaaattta atctactata cttaaagata tacttcacat ggagcattgt atgcctaaaa
     1801 ccaaatatgc tcttcctcca gttgtgttat acgaaagcca tgcggataga gctacgagcg
     1861 attttcttat caaacaacta cctgatttga agaaaactgg gtatacaacc atttgcgttg
     1921 atggaatgga accaggcgca tccctggagg aaaatatttc tatgatgaaa atactcatca
     1981 agatacaaat caagaaatta tctgagctac ctcttgaaca tcctgaatat gagcaaggaa
     2041 ttgaaaaact gagaagcgtt gttgccaaat tggagctttt tgaggcgatg aaggaacaag
     2101 gattcaaact tggtggaatt gacttacccg tttcagaaca gcttaaagag aagagcctta
     2161 attccataag aagagaacaa acgcttaccg ataatacctt agggcatgtg aaagaaaatg
     2221 atggaggagt agtcgttgtc ctaggatttg gccattgcat attccagcaa atgattaaag
     2281 aacaggatga aaatgccgat caatacctct ggtaccatgt ccataacccg gataatgaaa
     2341 cacaagccta caaagaattg gtcaaatcct atacaaaaaa aggactttct acttatttcc
     2401 cactgggagt taatattttt aaaagctcag ataaagaatt ggataccgat ttttggaata
     2461 aggtaagcgc caattgctat aattatgatc caaaagctct tgaaacatcg actgcttcca
     2521 ttttgaagtc cttactgggt cctgaagttt cagcacactt gcgcacagat ggacatcatc
     2581 acgtggatgc actgatatct cttgaaacag ttgaaaaaac acatcaggta aaatcttcgg
     2641 atttcttgag aagcttaagt aaaaccttag gcgacattca ctttgaagta gcaaaaatca
     2701 aaaccaaaga tcaggtgatt attcgtggca ttaatgaacc tgaggtagca gagcagatca
     2761 gtaagttatc aaaaaaaatg taaccaaaaa tatagtgtac tttaaattat cttgttgaat
     2821 aaacagttaa atgtgttatt gctgcttaaa agtaacatgg agtatacttt gccttttctg
     2881 tatagaaaag ggagtcattt ctatgttcaa acgaacaata cctctgtttg cagcattcac
     2941 tctggccatc tcgccttccg ttttcccaaa ttatgcctat gcgcaagaag acaagccgaa
     3001 aaccaatcaa tactggtggc ctaaaatgct cgatcttagc ccgctgcggc aacccaatgc
     3061 cacttcgaat cccatgggtg aacaattcaa ctatgccgaa gaattcaata gcttggattt
     3121 gaatgccgtg atagaagatc tcaaaaaatt aatgactacc tcgcaagact ggtggcctgc
     3181 tgattatggt aactatggtc cattattcat acgcatgtca tggcatgcgg caggaactta
     3241 ccgcatctat gatggccgtg gtggagcaaa tggtggcttc cagcgtttcg ccccgcaaaa
     3301 cagctggccg gataatgcca atctggacaa agccagacgt ttactgtggc caattaagca
     3361 gaaatatggg cgcaagattt catgggctga tttgttggta cttgctggaa atgttgcgat
     3421 ggaatctatg ggcttcaaga ccattggatt tgctggaggg cgtgaagacg catgggaagc
     3481 catcaatatc aattggggcc ctgaaggcaa atggctggaa agtaagcgcc aggataaaga
     3541 tggaaaactc gaaaaaccgc ttgctgcgac cgtaatgggc ttaatctatg tgaatccgga
     3601 aggaccaaac ggcgttccag atcctcttgc tgcggccgaa aaaattcgcg agactttcgg
     3661 gcgtatggcc atgaatgacg aagaaacagt tgctttaatt gcgggcgggc acgcattcgg
     3721 aaaaacacat ggagccgcgt ccggcaaata tctggggcca gcaccggaag cagcgggcat
     3781 agaagaacaa ggctttggtt ggaaaaacag ttacggcagc ggcaaaggga aagatacgat
     3841 taccagtggt ttagaaggtg cctggaccgt aacacctacc cactggagcc ataactactt
     3901 acaaaacctg ttcaatttca attgggttaa aaccaagagc cccggtggag caatccagtg
     3961 ggtgcctgag aattcgaatg cctcgtcaat ggttcctgat gcatttgacc ctagtaaaag
     4021 gcatgcgccg gtcatgttga ccacagactt ggcactaaaa tttgatcctg tttacagtaa
     4081 aattgccaag cgttttcttg ataatcctaa agagttcgat gacgcatttg ctcgtgcctg
     4141 gtttaagctg attcaccgag acatggggcc acgttcacgc tacctcggct ctttagtgcc
     4201 taaagaaatc atgatttggc aagatccagt tccaccagtt gattacaaat tagttgatgc
     4261 caatgatatt gctaacctca agggtaaaat tctcaactcg ggattatcca catccgagct
     4321 ggtcaaaact gcttgggcct cggcatccac cttccgtggc actgatatgc gtggaggggc
     4381 aaatggtgct cgaattcgcc tgtctcccca gaaagattgg ccggctaatg atcctcagga
     4441 gttggcaaaa gtattaaaaa cattggagag cattcagaat aacttcaata atgctcaagc
     4501 cgatgggaaa aagatatctc tcgcggattt gatagtttta ggcggtaatg ccgcaatcga
     4561 acaagcggcc aagcaagctg gctacgacat cattgttccc ttcatgccag gacgcacaga
     4621 tgccacacaa ggaatgaccg atgtgaagtc ttttgaggtt cttgaaccta aagcagacgg
     4681 gtttagaaat tactttgata aaagcaacaa tatgtcgcca ccagaaatgt tggtggaaaa
     4741 agcgagtctg ttgaaattaa gtgttccgca aatgacggtt ttagttggtg ggatgcgtgt
     4801 acttaacgcg aatactggac aaaatcaata tggtgtattc actgacaaac ctggaactct
     4861 aaataatgac tttttcgtca atctgctaag catgtcaaca gagtggaaga aatcaagtga
     4921 gacagagggg atttatgaag gttatgatcg caaaactggg aagctgaaat ggaaagcgac
     4981 ctcggttgat ctcatcttcg gcgcaaattc tgagttaaga gcagttgcag aagcctatgc
     5041 aaccgatgac gcaaaagaaa aatttataca agattttgtt aatgcctggg ttaaggtaat
     5101 gacagccgat cgcttcgaca tcaaggcggc aaataccaac attaacagtt aatcctcatt
     5161 ctttcagatt cagggtgaca aactgtgact cgatcatcgt ttgttaccct aagtcccaaa
     5221 tcaccggata aggctctgac ttatactggt ttaacaaagc ccggctaatt tagccaaacc
     5281 tctatggttt tccagcttgg cctatgccct ctcttgaatt acgtgttata cggctttatt
     5341 ccatttcaaa tattcgccac tttgtacttg aaaaaatctg gtttaaccca atattttgca
     5401 tgcgactttc atgttcacca ataagagata accgctttaa aatagacctc ttgcctaagc
     5461 tgattaattg gtttcaggcc aaggcactaa cgttttgagg agcggagttt gcattcagca
     5521 ataaaatgaa agagggcagg ttatgcaaga gggctaatga gtggattgaa gtaaaaacat
     5581 ccatatcaaa tagagataga attttttata aacaaatctt gtgaggagat ttttaatgaa
     5641 aaataaacta cttcccaatt taatcatcat cactcttgcc gctacaatat atgctaactc
     5701 cataaacgtt caggcgaaac aaaatgatca aatacaaaat agtaacgaac aattaaccca
     5761 ggatccattt gatactgatc ctttttttca atcacatgat gatgttctgc tgcaaataca
     5821 caaaatgcaa caagctatgg atcaatttat caaaagtcaa ttttcacaaa tgcaaaatac
     5881 ccttgcaaac gatcctcatc acaatccctt tggcagtgca aaaaatattc aaattacaga
     5941 gaataaagat gagattattt ataagataaa actaccgcaa ggttctgata gtaaagtgga
     6001 tattaccgtt aaaaatgggc agttagttct tagcgctaac gtcactcaga aaatcacccg
     6061 tgaacaagat aataacaaaa gtgtcagttt ctcccaaagc aattacatgc aatcatttcc
     6121 attgccccag agctatgatc cgaagtccat ggtcacaaaa atgaaagact caaatttaat
     6181 tgttactttt aaaaaaaatt cttaaccgca ttatctgctt aattaaataa cctgctaaaa
     6241 caaccatggg aaaggattga ttatacagtt tgatgccggc ttgaaatttt gattttctgc
     6301 agcgctggtt aaaggaaatc aagagcctgg gtttgaattt tctattgcaa agattccctg
     6361 tctttgcaca taaaattcaa gccccggcac catttttaaa aatagctgat tattttaact
     6421 gaggcttacc taagttaggt tgaaccaaac ttattgcatc ttctgccgca agcacttcat
     6481 tgtccgtact taagcttatg attttattaa ttaattcttc tggaagcctg ttgaagaagc
     6541 aagtgttatt tggatttcta agggcttggc ccaaaatcct tgcagcataa cgaacatccg
     6601 catgggcagc attagatgat tgtgaaacac acgcaggtgc attaatacca aagttatatc
     6661 cgggggtatg caaattttta tcattaaaat ataccgcatc ctgcccttca taaattgacc
     6721 atgttgctga agaggcgtgt ctaaataaag ttaaaaagtt ttgacgtatt tccttattag
     6781 gaaaaactac ggctaactcc ccattttttg cagtataggt actgagatac agcgtagtag
     6841 gattttcagg ataagtttgc ggacattctt tattggcatt gaatttatca gaagatgcaa
     6901 aatgagatat gccccccatt ttttgaataa atcggtctct ccattcttgg gtaggaaact
     6961 ttagtgcaag ttctccattt tttgctttat aaataataat tttttcttgg cttacgcatg
     7021 cgtgaaaatt ttgtaaattt gttaataatt ccggtttatc cttggcatag tgaatacaca
     7081 ttttttggaa atgatcttta aaaaaatcat taactaacaa ttctttaaga gctatttgtg
     7141 gatcagaatt caatgctttt atactgctca tgcctgaagt agctacaact ggtacaaatt
     7201 gagtgttgtt tgctatagct tttagagcgg ccagagcatt gggtataatt tgcgcatcac
     7261 aacgtaaaag attttgataa cttgttgtaa taatattttg cagctcattt aagtgttttt
     7321 catacttgtt gagtaaagca agtgcttctt tttgggatat catatttttt cctcaggttt
     7381 tcacatggct cgaaattcta acagta
//
LOCUS       DACVWI010000143         7404 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.143, whole genome shotgun sequence.
ACCESSION   DACVWI010000143 DACVWI010000000
VERSION     DACVWI010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7404
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.143"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            102..713
                     /locus_tag="JBH85_11190"
     CDS             102..713
                     /locus_tag="JBH85_11190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAU0946768.1"
                     /translation="MKKIAPTLKNEIINTAIDIAQDTSWEKVRLIDIAKALNIDLNTI
                     RYFFAEKEQIIDGCFDRADEAMLNASSRPKFDLLTAKEKLHDLLMTWLSTFEGQQKVI
                     RQMIFHKLEPGHLHLQLPAIKRISQTVQWWREAAGLRETFIQRAIQETGLTIIYLATF
                     SYWLLDNSTEHLATRLFLENKLNMAKNLSNFWGFTYYAPSKIS"
     gene            691..1743
                     /locus_tag="JBH85_11195"
     CDS             691..1743
                     /locus_tag="JBH85_11195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HAU0946769.1"
                     /translation="MHHLKLAERLGIQFPIIQAPMAGGATTPELVAAVSNSGGLGSLG
                     AGYMRPDEIRQAIIKIRQLTSKPFAVNLFIPEAHHATPEQIQKACDDINRCCTELNIE
                     IIPVTKPYSQSFVDQMQILIEEKIPVFSYAFGTLEPMWTKQLKKNGTFLIGTATSIHE
                     ARILEASGIDAIVAQGSEAGGHRGTFIGNAEDALIQLSELIPQLVETIRIPAIAAGGI
                     MNGKGIVSAINAGASGVQMGTAFLSCFEAGITYKYKQTLLSQQQDNTVLTRAFSGKLA
                     RGIRNKFIICMDNRKINILDYPIQNALTQMMRQKAREKDNIDFMSLWAGQSAHLCRSM
                     SASDLISTLVIEAEIR"
     gene            complement(1810..1989)
                     /locus_tag="JBH85_11200"
     CDS             complement(1810..1989)
                     /locus_tag="JBH85_11200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946770.1"
                     /translation="MPSLFKITKHTDPVMLFIIFIISQARTMDERIFQDLLKPPVSLL
                     KKFLIRSFSLSKLPH"
     gene            1960..2340
                     /locus_tag="JBH85_11205"
     CDS             1960..2340
                     /locus_tag="JBH85_11205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946771.1"
                     /translation="MFRYFKQGWHGDLKFSEVLFGSGGDYFLLEGGLAYIGFYILFAI
                     LLITSKPLSLDNILALALFSYGIVLYIWLIKAFWGSAHHCSNKISAVLIRTFTILLPL
                     ISIVLFFLIIIYYLVTAITDALSG"
     gene            2355..3521
                     /locus_tag="JBH85_11210"
     CDS             2355..3521
                     /locus_tag="JBH85_11210"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HAU0946772.1"
                     /translation="MNVSTSFIKREFDMDIKKNKAKIFVNYMLQLANININGQTPWDI
                     QIYNDEFYSRLLRDADLGLGESYMDGWWDCQRIDLFISKLINANLESKIKINFKLAFN
                     VFLSKILNLQTQKRSLHVGRQHYDRGNDLFQIMLDSNMNYTCGYWRKAENLEQAQLDK
                     LDLTCRKLCLKPGMKLLDIGCGWGGLAKYAAENYGVSVVGITISQQQYELAKTRCAHL
                     PVEIRFQDYRDLNEKFDRIVSLGMFEHVGYKNYRKYMEIVHQCLNDDGLFILHTIGSN
                     ESVTKATPWISKYIFPNGMIPSIMQIGQASEKLFVMEDWHNFGADYYKTLMAWHENFN
                     KGWDQIKSQYSEKFFRMWNYYLLSCAGAFDARMLQLWQIVFSKKGIQGGYSAPR"
     gene            3686..4012
                     /locus_tag="JBH85_11215"
     CDS             3686..4012
                     /locus_tag="JBH85_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946773.1"
                     /translation="MPKNNEPSGEELKKAGIVVGITNLLLWPFYYADSRWGLFASIFA
                     TSAVLYASHEVGESKRPVENSVARLGLFQQRGASNAEIENAFNNTVTGAAAIYDWLVP
                     GSNGPK"
     gene            4174..5625
                     /locus_tag="JBH85_11220"
     CDS             4174..5625
                     /locus_tag="JBH85_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HAU0946774.1"
                     /translation="MKFRTKLFLGLLLIVITTNGIFLFLSYQYGKETVYKEVGSSALS
                     IAAATAVLMNPEDIQKFNLDTSANSPLYKDLEKKLLEVRNANRRKDVYVNFIYSLFPD
                     SNNPKVLRFAVDPEENTIDKTELGTVMKLKTESGQTINVNYESPIVLPEFVEDIWGTW
                     LTALYPIKDAQGKYLGNIRVDVDADSVNQRFHFLLYSGIAVFISTFLFAIFLGWLLFQ
                     WFNKPLLKITTALKNIAQGDLEQHLDIRTKDEFAEVGRVINEMTEGLRQRNMLQVSLT
                     RFISHALAEKIVKSGELPQVFSERRKVTIMVCDIRDFTTISERIKPELVVDFLNHFFE
                     KMIEAITSQHGILDKYLGDGFLAIFGSPDDDAYQEDHAIHAALKMREAMKSLNADWAK
                     ILGSEIQIGIGINTGSAIVGNIGTDIHMEYTAIGDTVNLASRIENATKKLNTDILISE
                     YTYIATDHTAFQFIELGEISIKGRVHKVKVYTL"
     gene            complement(5754..7313)
                     /gene="ravO"
                     /locus_tag="JBH85_11225"
     CDS             complement(5754..7313)
                     /gene="ravO"
                     /locus_tag="JBH85_11225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavO"
                     /protein_id="HAU0946775.1"
                     /translation="MPTGIVLSSQSPEATTSFPRRGGTAAGINHVTGFPVIKMHRDAQ
                     ARPDERKYFNQIKDGSLVFITGHSNTALDHLTGDYVPPLATPVQPMSTEWTYKQFRDL
                     ILKNGSLKAGDTITVVLWACNAGEGGLSSGAGLLGRLFREKQINTRVIASAATTMRFD
                     GHYSPTPEGTPAMAFITENGSKDIRIFDFTEEATIEWKNKGRLYVTCNGIEGYNLYSP
                     KQLESLESEKIYKVMEEIFVDRHYKENIRTGEEVKQYFSKSKAEFILRWSSANESDTE
                     NKYVFIAASFQASDGIHSIRYGINKNGELFSINTASNKVTPIDILPLGVMATLTQHIT
                     QNKELIEKALHEKGAQMTPSPKLQHRVKRKKSDHTELLILKGEKEPLKPVQTDTLSSK
                     VPASPGWSTQENQDFLMFVTPLQVQELLKSHGETKKEKHEKKIRLGHEKTIGDEKTRK
                     PVSKHKEPSGENEEPEMDLSKRQRIPVVQRKRPQGRRHEFFSDSPKNPDEHKTEKDKT
                     ISPSRNPTKGG"
BASE COUNT         2295 a         1359 c         1392 g         2358 t
ORIGIN      
        1 tttttgattt aacttatagt taatttaact accaaaacca tcaaaaatta atcctgatca
       61 taaaattagt aataaactaa taagagacag ggaggtattt catgaaaaaa atagcaccaa
      121 cactaaaaaa tgagatcatc aatacagcaa tagacattgc ccaggatacc tcttgggaaa
      181 aagtgaggct gattgatatc gctaaagcat taaatatcga tttaaatacg atccgatatt
      241 tttttgcgga aaaagagcaa atcattgatg gctgttttga tcgtgctgat gaagccatgc
      301 tcaatgcgtc ctccagacca aaatttgatt tactcactgc caaagaaaaa ctgcatgatt
      361 tattaatgac ttggttaagt actttcgaag gccagcaaaa agtaatccgg caaatgatat
      421 ttcataaatt agagcctggt catcttcatc ttcaattgcc tgcaatcaaa cgcatcagcc
      481 aaactgttca atggtggcgt gaagcagctg gtcttcgaga aacctttatt caacgtgcca
      541 tccaggaaac cggattaacc atcatttatc tggccacctt tagttattgg ttattagata
      601 actccacaga gcatcttgca actcgtcttt ttttggaaaa caaattaaat atggcaaaaa
      661 atttatccaa tttttggggt tttacttact atgcaccatc taaaattagc tgagagactt
      721 ggtattcaat ttcctatcat tcaagcacct atggccggag gagctactac tcctgagttg
      781 gttgcagcgg tttctaacag tggtggtttg ggctctctgg gcgcagggta tatgagacct
      841 gatgagatca gacaagccat tataaaaatt cgccaattaa caagtaaacc ctttgcagtt
      901 aatcttttta tacctgaagc gcatcatgca acaccagaac aaattcaaaa agcttgtgat
      961 gatatcaatc gatgctgcac tgagttaaac attgaaatca ttcccgtgac taagccctat
     1021 tcccaatctt ttgttgacca aatgcaaatc ctgattgaag aaaaaatccc tgtttttagc
     1081 tatgcattcg gtacattaga accaatgtgg acaaaacaat tgaagaaaaa tggaaccttt
     1141 ctgataggaa cggcaacctc tatacacgaa gcaagaatac ttgaagcaag tgggattgat
     1201 gccattgttg cacagggaag tgaagcagga ggacatcgag gtacttttat cggtaatgcg
     1261 gaagatgctt tgattcaact atctgagctg ataccccaat tagtagaaac aatacgaata
     1321 ccagcgatag ccgccggggg aatcatgaat ggtaaaggca tagtttctgc aataaatgca
     1381 ggtgcctctg gcgtgcaaat ggggaccgcc tttttaagtt gttttgaagc tggcatcact
     1441 tataaataca aacaaaccct attatcgcag caacaagaca atactgtact aacacgtgct
     1501 ttttcgggaa agcttgctcg tggaattcga aataaattca ttatttgcat ggataatcgg
     1561 aaaataaata tcctcgacta ccccattcaa aatgcattaa cccagatgat gagacaaaaa
     1621 gccagagaaa aggataatat tgattttatg tcgttatggg ctggacaatc ggctcattta
     1681 tgccgctcta tgtcggcaag tgacttaata agtactttag ttattgaggc agaaattagg
     1741 taaaagagag gtgaatgatt acaaaaacag gacttacaaa aaaccttaag atcgaggcaa
     1801 aaaatgtttt taatgaggga gtttagataa actaaatgac cgaattaaaa acttttttaa
     1861 caaagagact gggggtttta gtaagtcctg aaaaattctt tcatccattg tcctagcttg
     1921 gcttataata aaaattataa ataacataac aggatcggta tgtttcgtta ttttaaacag
     1981 ggatggcatg gagatctgaa attttctgaa gttctgtttg gttcaggtgg tgattatttt
     2041 ttgcttgaag gcggcctggc gtatattgga ttctatattt tatttgccat tttgttaata
     2101 acatctaaac cattatctct agataatata ttagccctag ctctcttctc ctatggcata
     2161 gtcttataca tctggttaat taaagcattt tggggatcgg cgcatcattg ctcaaataaa
     2221 atttcagccg ttttgattcg tacctttacc attcttttgc ccttgatttc gattgtgttg
     2281 ttttttctga ttattattta ttatcttgtt acagccataa cagacgcttt gagtggctga
     2341 tgatgttgca ttgattgaat gtttcaacat cctttataaa aagggagttt gatatggata
     2401 ttaaaaaaaa caaagcaaaa atatttgtta attacatgct tcagctagcc aatatcaata
     2461 tcaatggcca aacaccttgg gatatacaaa tttataatga tgagttctat tccagattat
     2521 tgcgtgatgc cgatttgggt ctgggtgaaa gttacatgga cggttggtgg gattgtcaac
     2581 gaattgattt atttatttca aaactgatta acgcaaatct tgagtccaaa attaaaatta
     2641 attttaaatt ggcatttaat gtctttttat caaaaatatt gaacctgcaa acccaaaaac
     2701 gttctctaca tgttggtaga caacattatg atagaggaaa tgatctgttt cagattatgc
     2761 ttgatagcaa catgaactac acttgcggtt attggagaaa agctgaaaat ttggagcaag
     2821 cccaactcga caagctcgat ctgacctgca gaaaactctg ccttaaaccc ggtatgaaat
     2881 tgctggatat cggatgtgga tggggaggac ttgcaaaata tgctgctgaa aactatgggg
     2941 tatcagtagt tggcataacg atatcacagc aacaatacga gttagctaaa acgcgctgtg
     3001 ctcatttgcc tgttgaaatc cgatttcagg attatagaga cttaaatgaa aaattcgatc
     3061 gtatagtctc cttagggatg tttgagcatg ttggttacaa gaattaccga aaatacatgg
     3121 agattgtcca tcaatgttta aatgatgatg gtttgttcat attacacact ataggttcca
     3181 atgaaagtgt cacaaaagcc acaccctgga tttcaaaata tatttttccc aatggaatga
     3241 ttccatccat catgcaaata ggccaagctt ccgaaaaatt attcgttatg gaagattggc
     3301 ataattttgg agctgattat tacaaaacat taatggcatg gcatgagaat ttcaataagg
     3361 gatgggacca aattaaatcc caatatagcg aaaaattctt tcgtatgtgg aattattatt
     3421 tgctctcttg tgctggcgct tttgatgcca gaatgttgca attatggcag attgtttttt
     3481 caaagaaagg aattcaagga ggttactctg cgccgaggta aatggtttaa acgatttatt
     3541 ccgtatcgta ataccttcac cagcaaacct ggttttccat gccatgaagt tggcaagatt
     3601 attcatatat cccgttaatt ttgcttgcaa tttttattat ctggaatata gtttgaactg
     3661 aaattttgtc taaaaaggaa ttaatatgcc aaaaaataat gaaccaagtg gagaagagct
     3721 caaaaaagca gggatagtgg taggaataac aaacctgctt ttatggccat tttattatgc
     3781 cgactcgaga tgggggttat ttgcatccat attcgctact tccgcagtac tttatgcttc
     3841 tcacgaagtc ggagaaagta aacggcccgt cgaaaattca gtggcgcgac ttggcctctt
     3901 ccagcagcgt ggggccagca atgctgaaat tgaaaatgct tttaataata cggtcacagg
     3961 tgccgctgcg atatatgatt ggcttgttcc tggctctaat ggccccaaat aataagcatc
     4021 ctgtcttata ataaattata tttttgggaa gtattatttt atccaaaacc acatcgttct
     4081 ggagattggt aaagatctcc agaaatctgt tgtctttact tctcactgcc tttatccaat
     4141 acttataatt aatctgctaa tggtggataa ataatgaaat ttcgtactaa gttatttctt
     4201 ggcctacttc tcattgtaat cactactaac ggcatatttc tgtttttatc ttatcaatat
     4261 ggtaaagaaa ccgtatacaa agaagtaggc tcatcagccc tatccatagc tgcggcaaca
     4321 gctgtcctga tgaatccgga ggatatccag aaatttaatc tggatacgtc tgcaaactca
     4381 cctctttaca aagatcttga aaaaaaactt cttgaagtac gtaacgcaaa tcgtcgcaaa
     4441 gatgtgtatg tgaatttcat atatagttta tttcctgact ctaataatcc caaggtactt
     4501 cgctttgccg tagatcccga agaaaacact atagataaaa ctgaattggg aactgtcatg
     4561 aaacttaaga ctgaatcagg gcagacaatt aatgtaaatt atgaatcccc tatcgttctg
     4621 cctgaatttg ttgaagacat ctggggtaca tggctgactg ctttataccc aataaaagac
     4681 gcacaaggga aataccttgg aaatatccga gtggacgtag acgccgattc ggttaaccaa
     4741 agatttcatt tcttgctgta ctcaggtatt gccgtcttta tctcaacatt tttatttgcc
     4801 atttttttag gctggttact ttttcagtgg ttcaataaac ccttattaaa aattacaact
     4861 gcactcaaaa atattgccca aggtgatctt gaacagcatc tcgacattag gacaaaagat
     4921 gaattcgcgg aagtgggtcg agtaatcaat gaaatgactg aaggattaag acagcgtaac
     4981 atgctgcaag taagcttaac acgttttatt tctcatgctt tagcagaaaa aattgtgaaa
     5041 tctggtgagt taccgcaagt atttagcgag agacgtaagg tcacaattat ggtctgtgat
     5101 atacgcgatt tcacaaccat ttcggagcgt ataaaacctg aattggtagt tgatttttta
     5161 aatcattttt ttgagaaaat gatagaagct attacctcgc aacatggaat attggataaa
     5221 tatcttggag atggtttttt agcgattttc ggttcacctg atgatgacgc ctatcaagaa
     5281 gaccatgcta tccatgccgc attaaaaatg cgagaagcga tgaaatcact caatgccgat
     5341 tgggcaaaaa tattaggctc tgaaatacaa attggtattg gtatcaatac aggcagtgcc
     5401 attgtcggga atattggaac tgatatacat atggaataca cagctattgg tgatactgtc
     5461 aatttggcat cacgaataga aaatgccacc aaaaaactca atacagatat tctaatcagt
     5521 gaatatactt atattgcgac agatcatacg gcatttcaat ttatagaatt gggagaaatt
     5581 tctatcaaag gaagagttca taaagtaaaa gtttatacgc tttaagatta attattttta
     5641 atctgtaaca attgactggg aaccctttat cacaccatat caaaatacac ccactaattc
     5701 ttgtgtcaaa atggtatagt cttaatcaac accaacaaca ctttgcttgc cagctagcct
     5761 cctttggttg gatttcgcga gggagatatc gttttatcct tttctgtttt atgctcatct
     5821 ggattttttg gggaatcact aaagaactcg tgcctacgac cctgaggtcg ttttctctgt
     5881 acaacaggta ttcgttgcct tttacttaaa tccatttctg gttcttcatt ttctccagat
     5941 ggttctttat gtttagatac tggctttctt gttttctcat caccaatagt tttttcatga
     6001 cctaatctga tttttttctc atgtttttcc ttttttgttt ctccatgaga tttaagcaat
     6061 tcctggactt gcaacggtgt aacaaacatt aagaaatcct gattttcttg ggttgaccat
     6121 cctggagaag caggcacctt gcttgagaga gtatctgttt gaacgggttt taatggttct
     6181 ttctcgcctt ttaaaataag caattcagta tgatctgatt ttttacgctt cactctatgt
     6241 tgtagttttg gactaggagt catttgagct cctttttcat ggagtgcttt ctctatcaac
     6301 tctttatttt gagtaatatg ttgcgtcaaa gtagccatta cacccagtgg taaaatatca
     6361 attggcgtaa ctttattgct agccgtattt attgaaaaaa gctctccatt cttgtttatt
     6421 ccatatcgaa tgctatgaat tccatcagag gcttgaaaag atgccgcgat gaagacatac
     6481 ttattttcag tatcagattc attggctgaa ctccaacgta atataaactc tgccttagac
     6541 ttggaaaagt attgtttcac ttcttctcca gttctgatat tttccttgta gtgcctgtca
     6601 acaaatattt cctccatcac tttatatatt ttttcacttt ccagggattc taattgttta
     6661 ggactgtaca agttatagcc ttcaatccca ttacaggtaa cataaagacg ccctttattt
     6721 ttccattcaa tcgttgcttc ctcagtaaaa tcaaaaatac gaatatcttt gctaccattc
     6781 tctgttataa acgccatagc tggcgttccc tctggagttg gagaatagtg accatcaaat
     6841 cgcatagtag ttgctgctga agcaataact cttgtattaa tttgtttttc cctgaataag
     6901 cgccccaata agcctgcccc actactaaga cctccctcac ctgcattaca tgcccaaaga
     6961 acgacagtta tcgtatcacc tgctttgagg cttccattct tcagaatcag atctctaaac
     7021 tgtttatatg tccattcggt actcattggc tgaaccggag tcgctaatgg gggaacataa
     7081 tcgccagtaa gatgatccaa ggcagtattg ctatgtccgg taatgaaaac caggctgcca
     7141 tctttaattt gattaaagta ctttcgctcg tcaggacgag cctgagcgtc tctatgcatt
     7201 ttaataacag gaaaaccagt cacatggttt attccagcag cagttcctcc tcgacgagga
     7261 aaagaagttg tggcttcagg ggattgtgaa cttaatacga ttccagtagg cattattcat
     7321 actcaattag tttatcttga aaatttgagc aaaattatat gcaatcagat ttttattgga
     7381 acttcaaagt tgttttgctt tgct
//
LOCUS       DACVWI010000144         7375 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.144, whole genome shotgun sequence.
ACCESSION   DACVWI010000144 DACVWI010000000
VERSION     DACVWI010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7375
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.144"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            19..993
                     /locus_tag="JBH85_11230"
     CDS             19..993
                     /locus_tag="JBH85_11230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1810 family protein"
                     /protein_id="HAU0946776.1"
                     /translation="MKSREKFMARNKRLDRFHNAQNSNTCGYDQAFSEIQGGRKRSHW
                     IWYIFPQLENLGKSPSAKLYGIKDFNEACDYLKDPVLFKRYFELIKLIEEKLKNIPLP
                     HLMGGFPDDRKFISSLTLFQATSNYLSSKDTDSQNKYHELYETCNRVFKQIAPQGYSP
                     CQQTELLVKHQSNSPVKKTTEKSSQPPQVTIFSPKRSKPNTAHPILKDLAQYINKRGN
                     EWSYHYNFLGLVAFVYFIQDLILGTDYLNDKARQVKLTAASKLQKILDPQCHERCNLN
                     PSERKALSDGRLGEIINKHGGLDKILTEAPRKPPKTGHDQEINISPFS"
     gene            1266..1838
                     /locus_tag="JBH85_11235"
     CDS             1266..1838
                     /locus_tag="JBH85_11235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HAU0946777.1"
                     /translation="MSQNIILNRCEWVGQNKPHYELYHDTEWGIPVHDDEKHFEMLIL
                     EGAQAGLNWETILKKRDGYRRAFKQFNPQAVAQMTDDELNALLINPEIIRNRLKIFST
                     RKNAKVFLSIQQEYGSFDSYVWQFVNGAPILNRPENIRAIPATSKESDALSKDLKKRG
                     MSFVGSTIIYAYMQAIGMVNDHIVTCFRAK"
     gene            complement(1998..3089)
                     /locus_tag="JBH85_11240"
     CDS             complement(1998..3089)
                     /locus_tag="JBH85_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946778.1"
                     /translation="MKKYHQLLMGISLLLFGVCNYAGDTGPVENSDLFRVFIPNLKPG
                     YEFSATAFYLQPGADNLGWGVITTVLPIPSPNWQVVTFNPDYQVGFNLGGRYVFANSG
                     SDLQLNWSHLRTNDTDNVFVNPSSQWISPFSQTGTPPTPSGQITGVALLKLAHASLDF
                     SYDAVSLDVGKFINFGSKLQTRLFTGLSSAWIKEELISTFRGFSLPILSLNNTSTYKG
                     VGPRLGFNNSYNISHGFNLVGQLAGSVLYGRMQPAQYQFTGTSQQLIIAGIFVNREGL
                     ANPSVNQLVPALDAKIGLSYLYSLKQNWDLNFEAGYMGALYFNPLSSYETNTNVIALD
                     TGSLSTSSAKHTQSNFSVGGPYITVSLRT"
     gene            3109..3291
                     /locus_tag="JBH85_11245"
                     /pseudo
     CDS             3109..3291
                     /locus_tag="JBH85_11245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096200.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(3483..4340)
                     /gene="queF"
                     /locus_tag="JBH85_11250"
     CDS             complement(3483..4340)
                     /gene="queF"
                     /locus_tag="JBH85_11250"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HAU0946779.1"
                     /translation="MNKELESIYQNIANQSELGQTANYDSYYNPKRLYPIPRAPKRQE
                     INLDPNSTTFYGFDCWNHYEVSWLNSKGKPVVAMAVISYDCHSPCIIESKSLKLYFNS
                     LNNSTFPDVETVVQTISKDLSYCIGSEVAVNVYPLSDIPNQTIYAAFDGVCLDKLDIE
                     CSVYHVMPDFLSTSSELVEEVLYSDLLKSNCLVTNQPDWGSVQIIYKGKKINHEGLLK
                     YLISFRNHNEFHEQCIERIFADIMRFCQPESLTVYGRYTRRGGLDINPIRSTEPCAFD
                     GQNIRLIRQ"
     gene            4485..4886
                     /locus_tag="JBH85_11255"
     CDS             4485..4886
                     /locus_tag="JBH85_11255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HAU0946780.1"
                     /translation="MINQQIEVFLKSPAFAVVGASSNREKYGNKVLRCYLRNGKKVYP
                     VNPHETLIESLPVIHSVNDLPDDVHSISIITPPSITEEVVKEAVKKGIQHIWMQPGAE
                     SDSAIQYGLDHKLNVISGGPCILVVMGYEEN"
     gene            complement(4951..6072)
                     /locus_tag="JBH85_11260"
     CDS             complement(4951..6072)
                     /locus_tag="JBH85_11260"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010653784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAU0946781.1"
                     /translation="MPLQPFKTSNLLTMGVELELQLISLSNFDLTAASPDILELLGRS
                     SFPGSFTPEITESMLEIATDVHEEYDQLLKQLFHIRDALVTVGDRLNIGICGGGTHPF
                     QMWSDQRIFNKTRFIEVSELYGYLTKQFTIFGQHIHIGCEDGNQALFLLHSLNRYIPH
                     FIALSASSPFVQSKDTLYNSARLNSVFAFPLSGRAPFVLNWDEFSLGYFEKMEHTGIV
                     KSMKDFYWDLRPKPEFGTIEMRVCDSPLTVERAAALACYMQALCSYLLENKEPLPHED
                     DYLVYNYNRFQACRFGLDGTLVHPKTYEQILLREDILTTLRRLKPYANQLNSTMALEH
                     IYEITHKGSDASFLREKYAEHRTLESVVNESLKQFRRSK"
     gene            complement(6074..7261)
                     /locus_tag="JBH85_11265"
     CDS             complement(6074..7261)
                     /locus_tag="JBH85_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HAU0946782.1"
                     /translation="MIDVGKIITDLAWPISLLIAWFAGELGYRWAKLPHISIYAIVGF
                     SLASTQIGLLPSIQPPSILLLANIGFGLILFESGYRINLRWLSYNPWVAASSITEATL
                     TFCLVYILVKSFGLQTSTCLLLASLSMATSPATVVRVINEQRSSGQVTERVLHLSVIN
                     CVLAVFLFKVIIGLVVFRTSGNLWEAAYASLTVTAISTIWGIIFGVIMPILLKTVKST
                     CQDNTLAFACAVILLVILTHNLKLSPVLATLTFGLVSRHGRMVFSPSQPGFGTLGDLL
                     SVLLFVFIAATIEWQRVVTGVWIGLSIITVRFVAKIIGISLFAHISGISLKKGILTGL
                     AMTPISVFVILILEQSRYIGINLVDTLAPLAMVALTLEILGPIMVQRALIKANEISAI
                     KEF"
BASE COUNT         2489 a         1465 c         1306 g         2115 t
ORIGIN      
        1 tcgtgaatat aaaaattaat gaaatcaaga gaaaaattca tggccagaaa taaaagactc
       61 gatcgttttc ataatgctca aaatagtaat acttgtggct acgatcaagc attcagcgaa
      121 atacaaggcg gaagaaaaag aagccattgg atatggtata tttttcctca attggaaaat
      181 ttaggtaaaa gcccatcggc caaactatat ggaattaaag attttaatga ggcatgtgat
      241 tatttaaaag atcctgtact gtttaagcgc tattttgagt taataaaact catagaggaa
      301 aaattaaaga acattcctct acctcatctg atgggtggtt ttcctgatga tcgtaaattc
      361 atctcaagtt tgaccttgtt ccaagccact tccaattacc tgagttcaaa agatacggat
      421 tctcaaaaca agtatcatga gctttatgag acttgtaata gagtttttaa acaaattgct
      481 ccacagggtt attctccatg tcaacaaact gagttattgg tcaaacatca atcaaattcc
      541 cctgtgaaaa agacaacaga aaaatcaagt caacctcccc aagtgactat cttttcaccc
      601 aaacggtcca aaccgaatac tgctcaccct atccttaagg atcttgctca atatataaac
      661 aagaggggaa atgaatggag ttatcattac aattttctag gcctagtggc tttcgtttat
      721 ttcatacagg atttaattct tggaaccgat tatttgaatg ataaagctcg tcaagtcaaa
      781 ttaactgcgg caagcaaatt acagaaaatt cttgatcccc aatgccatga acgatgtaat
      841 ctaaatccat cagaaagaaa ggcgctttcc gatggtcgct tgggggagat tattaataaa
      901 cacgggggat tagataaaat cctgacagag gctcctagga aacctccaaa aactggccac
      961 gatcaggaaa tcaatattag tcccttctca taaaaccatt ggatttcaag tctttgcacc
     1021 aagaaacatc acattataaa cccaatggct tttacaattt tttaatctct acgaattcac
     1081 tacaaaccac atcaattatt attcaaaaga ctcccataga gcgacatatg caccagtcgg
     1141 atcgactatc attacttgac aacgaataca acttaatgaa tagttcacac agaatagtag
     1201 accaatgtta taaatactgc cattaccagg attaaatatt tttaacccaa tctaataatt
     1261 acattatgag tcaaaacatc attctaaacc gatgcgaatg ggtagggcaa aataaacccc
     1321 attatgaact ataccatgat actgaatggg gaattcctgt tcatgatgat gaaaaacatt
     1381 tcgagatgct cattctggaa ggtgctcagg cagggttaaa ttgggaaact atattaaaaa
     1441 agcgcgatgg ataccggaga gctttcaagc aatttaaccc acaagccgta gcccaaatga
     1501 ctgatgatga attgaatgct ttgttaatta atcctgaaat tatccgcaac cggcttaaaa
     1561 tcttttctac cagaaaaaat gcgaaggttt ttctatctat tcaacaagaa tatggatcgt
     1621 ttgattctta cgtttggcaa tttgttaatg gggcacctat cttaaatcgc cctgaaaaca
     1681 tacgagcgat accagcaacc agcaaagaat cagatgcctt atccaaagat ctgaaaaaaa
     1741 gaggaatgag ctttgttggc tcaacaatca tctacgctta catgcaagcc attggtatgg
     1801 tgaatgatca catcgtaacc tgttttcgag ccaaataaag aaatcactcg aactcctgaa
     1861 ggtgactcat attctccata agctttttag cgaaatcatt taaaccggat tatctgtcgt
     1921 atcttggcct aaccataaat tggaaattca gttttcatat tttgttaggc caaggaatga
     1981 tagtttgacc aacctaatca ggttctcaag ctgactgtaa tgtaagggcc acctacagaa
     2041 aaattacttt gtgtgtgttt ggcacttgat gtcgacaaag agccagtgtc caaggcaata
     2101 acattggtat ttgtttcata actggataaa ggattaaaat acaaagctcc catataccct
     2161 gcttcaaaat tcaaatccca attttgtttc aatgagtaaa gataacttaa cccaattttg
     2221 gcatccagag ctggaaccag ttgattgaca ctgggattag caagtccttc acgatttaca
     2281 aagattccag cgataatcaa ttgctgagag gttcctgtga attggtattg agctggttgc
     2341 attctgccgt acaagactga gccggcgagt tgtccgacca aattaaaccc atgagaaata
     2401 ttataactat tattgaatcc cagtctcggc ccaacacctt tgtaagtgga tgtattattt
     2461 aatgacagta tagggagtga aaagccccga aaagttgata tcaactcttc ctttatccag
     2521 gcactgctta accctgtaaa aagccttgtc tgtaatttgg aaccaaagtt aataaatttt
     2581 ccaacatcga gactgactgc atcataacta aaatcaagac tggcatgtgc aagcttcaat
     2641 aaagccactc ctgtaatttg gccagaaggc gtaggaggag taccggtctg agaaaaagga
     2701 gagatccatt gcgatgaggg attcacaaag acattatcag tatcattggt acgcagatga
     2761 gaccagttta attgcaaatc gcttccagaa ttggcaaata cataacgtcc tcccaaatta
     2821 aacccaactt gataatctgg attaaaagta acaacctgcc aattaggcga tggtattggc
     2881 agtactgtcg taatcacccc ccaacctaaa ttatccgctc ccggttgcag ataaaaagct
     2941 gtcgcagaaa attcatatcc aggtttcaaa ttaggaatga agactcggaa caggtcgcta
     3001 ttttcaactg gccctgtatc accggcataa ttgcatacac caaacaacag taagctaatt
     3061 cccataagta attgatgata tttcttcata tttaatgaat cctccctaat gcatgatttc
     3121 tatcaatcag gacttacgaa aaaccctaat ctctttgtta aaaaaagttt ttaattcggt
     3181 catttagttt atctaaactc cctcattaaa aacatttttt gccttgacct tggagttttc
     3241 gtaagtcctg tcaatcaaaa taaactccaa aaccaagttt ttattcttta atctatggat
     3301 ttcagcgatg gaccaatcga acagcgatga gtaaatctgt ggaattaagt ttaagattta
     3361 tgcctgaatt ggtacaaatt tccaggcaat cttagcatag gaaagatgta atgtattgaa
     3421 aattaattat taaattccca ggcgggatta aaatttatcc cttaggggat aagtaccttc
     3481 ttttattggc gtattaaacg aatattttgc ccatcaaaag cacaaggttc tgttgacctg
     3541 attgggttaa tatccagacc tccccttctt gtatatcgtc cataaacagt caatgactca
     3601 ggttggcaaa atcgcataat gtctgcaaat atccgttcaa tgcactgctc atgaaattca
     3661 ttatgatttc taaatgaaat caggtattta agcaaccctt catgatttat ctttttacct
     3721 ttataaataa tttgaacgct tccccaatcc ggttggttgg taaccaggca gtttgattta
     3781 agtaaatcag aatacaatac ctcttcaact aattcagacg aggtcgaaag aaaatcaggc
     3841 attacatgat atacagagca ttcaatatca agcttatcaa ggcaaacacc atcgaatgca
     3901 gcatagatag tttgattagg gatatccgac aaggggtaca cattaaccgc cacttcagaa
     3961 ccaatgcagt aacttaaatc tttgctgata gtttgcacaa cggtttccac atcagggaaa
     4021 gtactattat tcaacgagtt aaaatagagt tttaatgact ttgattcaat aatacacggg
     4081 gaatgacaat cataagaaat aacagccatc gcaacaacag gtttaccttt ggagtttaac
     4141 caggagacct cataatgatt ccagcaatca aaaccataga aagtggtgga gttgggatcc
     4201 aaattaattt cctggcgttt tggggctctg gggataggat acagcctttt aggattatag
     4261 tagctgtcat aatttgcagt ttgccccagc tccgattgat ttgctatatt ctgataaata
     4321 ctttcaagtt ccttattcat tatggatgcc ttttgtaact ctaaaaaaca aagtgattat
     4381 aatctatcat gttacctaag ggtcaatttt ttcttaaaaa aaaggaaata gcctatattt
     4441 aattaaagat actgaaatta gcatctaaag gagtgcattt acccatgatt aatcaacaga
     4501 tagaagtatt tttgaaatct cctgcttttg ccgtagttgg cgcctcttcc aatagggaaa
     4561 aatacggcaa caaagtattg cgatgctatc ttcggaatgg caaaaaagtc tatcctgtaa
     4621 atccacatga aacgctgatt gaaagcttgc ctgttattca ttcagtaaac gatttacctg
     4681 atgatgtaca cagtatttct attatcaccc ctccatccat tactgaagaa gtcgtcaagg
     4741 aagcagtcaa aaaaggaatc caacatatat ggatgcagcc tggagcagag agtgactcgg
     4801 ccattcaata tggcttggat cacaagctta atgtcatttc tgggggacct tgtatattgg
     4861 ttgtcatggg gtatgaagag aattaaggaa atacaaaaag ctattttgta gtccaaaata
     4921 gcttttttga ttttgtataa tcccagccga ttatttagaa cgcctgaatt gctttaatga
     4981 ttcattgacc acactttcaa gagttctatg ttctgcatat ttttctctta aaaagctggc
     5041 atcactccct ttatgagtta tttcataaat atgctccaaa gccatagtac tatttagctg
     5101 attagcataa ggctttaatc ggcgaagtgt tgttaaaata tcttctcgaa gcaaaatttg
     5161 ctcatatgtt ttgggatgca ccagagtgcc atccagacca aatcggcatg cttgaaaacg
     5221 attgtaattg tacacaagat aatcatcttc gtgaggcaga ggttctttat tttccaataa
     5281 ataactgcaa agcgcttgca tataacatgc taaagcggct gctcgctcaa ccgtaagggg
     5341 actatcacac acccgcattt caattgtccc aaattcaggt ttaggtctta aatcccaata
     5401 aaaatccttc atacttttca ctatgccggt atgctccatt ttttcgaaat aaccgagtga
     5461 gaattcatcc cagtttaata caaagggagc ccttccactt aatgggaagg caaataccga
     5521 attcaatcga gcagagttat acaaggtatc cttactctga acgaagggag atgaagcaga
     5581 caatgcaata aaatgaggga tataacgatt taaagaatga agtaaaaaaa gcgcttgatt
     5641 accgtcctca caaccaatat gtatatgttg cccaaaaata gtaaattgct tggttagata
     5701 gccatataat tcagacacct ctataaacct ggttttatta aaaattcgct gatcagacca
     5761 catttgaaat ggatgggttc ccccgccaca aataccaata tttaatcggt ctccaactgt
     5821 caccagggca tcgcgtatat gaaacagttg tttcagtagt tgatcatatt cttcatgcac
     5881 atctgtcgct atttctaaca tactctctgt gatttctggc gtaaaactgc cgggaaaaga
     5941 cgatcgtccc aagagctcca atatatcagg gctagcggca gtcaagtcaa aattacttaa
     6001 gctgattaat tgtaattcca gctcaacccc catagtcagt aaattagatg ttttgaatgg
     6061 ttgtaaaggc atttcaaaat tccttgattg cagagatctc gttcgcttta attaaagcac
     6121 gttgaaccat tattggaccc aatatttcca aagtcagagc aaccatagcc agcggggcca
     6181 gtgtatctac caaattaata ccaatatatc ggctctgttc taaaatcaaa atgacaaaaa
     6241 cagagatggg ggtcatagcc aaaccagtca agataccttt tttaagcgaa atcccactaa
     6301 tatgggcaaa taaactaatc ccgataattt tagctacgaa ccttacagtt ataattgata
     6361 atcctatcca tacaccagtt actacccttt gccattctat ggttgctgca ataaatacaa
     6421 acaaaagtac cgataacaaa tcacctaagg tgccaaatcc tggctgtgaa ggagaaaaaa
     6481 ccattcgccc atgacgggaa accaacccaa aggttaatgt ggctaaaacc ggggacaatt
     6541 ttaaattatg ggttaaaata accagcagta tcacagcgca ggcaaatgcc aacgtattgt
     6601 cttgacaggt gcttttaact gttttaagca aaatgggcat tatcactcca aaaataatcc
     6661 cccaaatagt tgaaatggct gtcaccgtta agctggcata agctgcttcc caaagatttc
     6721 ctgaagttct gaaaacaacc aagccaatga tgactttgaa taaaaatact gccagcacac
     6781 aattgatcac ggagagatgt aaaacacgtt ctgtcacttg gcctgaacta cgttgttcat
     6841 taatcaccct gactacagtg gctggtgaag tcgccatgga caacgaagcc aataaaaggc
     6901 aggtcgaagt ttgtaaccca aaggatttca ctaaaatata aaccaggcaa aaggttaaag
     6961 tcgcttcggt aatactggat gctgcaaccc aggggttata acttaaccag cgtaaattaa
     7021 ttctatagcc tgattcaaac aagattagcc caaaaccaat attggctaaa agtaaaatag
     7081 atggtggttg aatagacggt aataatccta tttgagttga tgctagtgaa aatcctacaa
     7141 tcgcatagat actgatatga ggcaattttg cccatcgata tccaagttcc cctgcaaacc
     7201 aagctatcaa taaactgata ggccaagcca agtcggttat aatttttcca acatcaatca
     7261 tccatacctc ctatgaaaat ccgaccttac tttataacac acatcgattt gttttgcaga
     7321 attgaagtat ttttaagaca atataaaata atcaggactt acgaaaaatc ctaag
//
LOCUS       DACVWI010000145         7313 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.145, whole genome shotgun sequence.
ACCESSION   DACVWI010000145 DACVWI010000000
VERSION     DACVWI010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7313
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.145"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(134..886)
                     /gene="kdsB"
                     /locus_tag="JBH85_11270"
     CDS             complement(134..886)
                     /gene="kdsB"
                     /locus_tag="JBH85_11270"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HAU0946783.1"
                     /translation="MSHNFHVIIPARYHSSRFPGKLLQEINGITVIERVYRQALLAEP
                     KSVIIATDHDEIADRAIQFGAEVVITSHTHQTGTDRIAEVIAKGSFAPDDVIVNVQGD
                     EPFIRPKLIQQVACSLTKTKAPVSTLCWPISSLEILNNPNVVKVVCTRDNHALYFSRS
                     AIPFHRDDKNAYSNTFRHIGLYAYRAAFLLEFVSWPPCTLEQIECLEQLRILWSGFSI
                     RVDEACEEPLQDINTKEDLILAQQYFLDTFNV"
     gene            complement(883..1062)
                     /locus_tag="JBH85_11275"
     CDS             complement(883..1062)
                     /locus_tag="JBH85_11275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HAU0946784.1"
                     /translation="MDKKLLEILVCPLCKGKLLFKKQELICKFDRLAFPVRDDIPVML
                     EQEARLIPLEEKDKL"
     gene            complement(1055..1726)
                     /gene="tsaB"
                     /locus_tag="JBH85_11280"
     CDS             complement(1055..1726)
                     /gene="tsaB"
                     /locus_tag="JBH85_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HAU0946785.1"
                     /translation="MMKLLAIDTSTELASVAILIGDEIISREQDSQRIHAQLILPMID
                     ELIAQTGLGLNQLDGIIFGCGPGSFTGLRIACSIAKGLAYANDLPLVPVSSLAAIAWT
                     AREIKEDFNQPVLSVLDARMHEMYWSCFLEHQFLAQDRINAVKDIQLPANQSFILAGV
                     GIDLYWKDFPEQIKSQISEVLAVFPTASAMIRLAQKANIKAVSVAQAQPVYVRNQVTQ
                     GDSRG"
     gene            complement(1704..3704)
                     /locus_tag="JBH85_11285"
     CDS             complement(1704..3704)
                     /locus_tag="JBH85_11285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HAU0946786.1"
                     /translation="MGRSKGQTSIFAKRVEEITTFAETCRRTLSEKGRLSTAIPGFVA
                     RAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALISTATKTLQDQ
                     LFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDK
                     LSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRAMEADIV
                     VINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQLADIASNFNGERLGTRQFKDLVD
                     DMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWDLVKRNKEFMEAWNT
                     WLSLKDELIQCLESKDTADIPGLKRCKERLLDLETVLLSFTEENNHKIRWIERFKHTL
                     VFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASVFDSFCKPLGLDKVQTLLLSSPF
                     DYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFLFTSHKAVKLVAQMM
                     SNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLPF
                     ANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIADPR
                     LTGREYGRTILASLPGLPKTRDEEKVLHFIKELALNDETVSD"
     gene            complement(3650..3985)
                     /locus_tag="JBH85_11290"
     CDS             complement(3650..3985)
                     /locus_tag="JBH85_11290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HAU0946787.1"
                     /translation="MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCA
                     LCEPECPVNAIVSEDDLTEEQQQFKELNAELSKTWPNITAKKDAPSDAKDWEEVKDKL
                     QYLQKEWKK"
     gene            4268..7060
                     /locus_tag="JBH85_11295"
     CDS             4268..7060
                     /locus_tag="JBH85_11295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1924 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946788.1"
                     /translation="MPLNLPPKSSKNTMPLVIAYNNAPEDDKIQKLFYLQKINYLLNK
                     TQLNDDLFDWINDAEEGGWLNELAKFSINPNASFFLKGMQFAKAITEEIKNKPEINSS
                     EVNIYHLMQERDQLLKEVEFEKCATRYAEINFLLNELALNDKKTKEIVERQTEILRLV
                     APKIKAIKGESIDNLPVIPSYKTKELGNHVNNFNFKFTMSGWEAPFVFRVEDRHELGK
                     EQELHSYGVSKYFIEDYSVFMMRFKAEDGSTVYKPVILSQFANQNNLEEIAKQLKDGS
                     PKNIAPRIGYYFVQLTDFCLKLIETHNYHPDIKLNNFLVHNNRVLVSDRKTFTTNDNP
                     LASEILTSPLFAPDEFLKCLLFNKEGDPVGYNRNALWKRMNMPQFMAYQLGMALKQFL
                     ILTQLDELPDDFRNPDHSAVSHFKTPSRQIINLSLLVQELTRLDPDKRMTIKQFQTLL
                     NFKNLPPDAFYQKVEEVFPSSQLGIAEDIEALNKVLNSDLKGEALLKQANPVFTKLSK
                     YDPKETRLTRLAEKLAIRCFNNVSKPYFQKLSGLIESALEKDVNEIRQLLNPQSNSER
                     LLQKASPIFMKLFERQPEVPQLTDLAKQLAAQCFDESSKNYFTRQLPLLIEEELLNQD
                     WEQAPWYRKALHWLTFGYFRVDNVTEISSLKIPEHTKGKEFQIYFWQLLFLPSEEIKN
                     MFTSKDSQISEFLLGYIEKEREKRETETPSVQIPVDLKGEEFQIHFPQLEFLPSKDFE
                     SIGEKEGEHLECFIFANLQEILSHNNSDSSEKNSTSEPSDSESEIHLNAGNVDTIIIA
                     NEPNPTDAKPQKKDNDGAKQNNPAKASSPEGIVSTPEVEEHPKKKITDDAPKPKTKRS
                     VHFFDEAKKSKPKEKENASPAVDETPPAKRKNVCRIDSVRSTLFRGDGSHRQKIKEQR
                     PRLSEIAWEPPKPNLQ"
BASE COUNT         2413 a         1521 c         1302 g         2077 t
ORIGIN      
        1 tattacaaaa agatgtcatt tcgatgtgct aaaaaatagt caagatcgtc actccattat
       61 gatgaaaatt gagtggcgac catacggagt gaataaaatc attctcatag aaaaaacaat
      121 aaattacaac gagttataca ttgaaagtat caagaaaata ttgctgagcc aaaatcaaat
      181 cttcttttgt attaatatcc tgtaaaggtt cttcgcaggc ctcatcaacc cggatagaaa
      241 aacctgacca taggatgcgc aattgctcca aacactctat ttgttccaag gtgcagggcg
      301 gccagctaac aaattccagt aaaaaggcag cacgataagc atataaaccg atatgcctga
      361 aggtattgga ataagcgttt ttatcatctc tgtgaaaagg tatcgcgctt cttgaaaaat
      421 aaagagcgtg attatctcga gtgcatacca ctttaaccac attagggtta tttaatattt
      481 caaggctgct aataggccag cataaagtag acacaggcgc ctttgtcttt gttaaagagc
      541 aagcaacttg ttgaattaat ttgggtcgga taaatggctc atcaccttgc acattgacaa
      601 tgacgtcatc aggagcaaag ctacctttgg cgataacctc cgcaattcga tcagttccag
      661 tttggtgcgt atgtgaagtg attacaacct ccgctccaaa ttggattgcg cggtcagcta
      721 tctcatcatg atcagtggca ataatcaccg actttggttc tgccagaagt gcttgcctgt
      781 aaactcgttc aatcacggta ataccgttaa tttcctgaag taatttacct ggaaaacgac
      841 tggaatgata tctggctggt ataatcacat gaaaattatg gctcataatt tatctttctc
      901 ttccagagga atcaaacgcg cttcttgttc cagcattaca ggaatatcat cacgaacagg
      961 aaatgccagc ctatcaaatt tgcagatcag ttcctgtttt ttgaacagca attttccttt
     1021 acataaagga caaaccaata tttccaataa ttttttatcc acgcgaatct ccttgagtaa
     1081 cctgattgcg cacatacact ggttgtgcct gcgccacaga aactgccttg atatttgctt
     1141 tctgtgccaa acgtatcata gcagacgctg tcggaaaaac agctaatact tcactaattt
     1201 gtgatttgat ctgttctggg aaatccttcc agtacaaatc aatcccaact ccggccaaaa
     1261 taaaggattg attggctggc agctgaatat cttttaccgc gttaattctg tcctgggcta
     1321 agaattgatg ctccaaaaag caactccaat acatttcatg catacgagca tccaaaacag
     1381 acaatacagg ctgattaaaa tcctctttta tttcccgagc tgtccaggca attgcggcta
     1441 aactgctcac aggaacaagg ggcaaatcat tggcataagc caaccctttt gcaatgctac
     1501 acgcgattct caatcctgta aaacttccag ggccacatcc aaaaattatt ccatccaatt
     1561 ggttaagacc caatccggtt tgcgctatca actcatcaat cataggtaaa atcaattggg
     1621 catggattct ttgactatcc tgctccctgc ttatgatttc gtcacctata aggatggcaa
     1681 cactggccag ttcagttgag gtatcaatcg ctaacagttt catcatttaa agccaactct
     1741 ttaataaaat gcagtacttt ttcttcatcc cgagttttcg gaagaccagg taaacttgcc
     1801 aaaatggttc gaccatactc tctaccagtc aaacgtggat ccgctatcat taatatacct
     1861 ttatcggtga tgtcacgaat caatcgccct actccctgtt ttaatgcaat gacagcattt
     1921 ggcaaggata attcatcaaa accggaaagc ccttttttct ttaaataaga cattctgcca
     1981 cgaattacag gatcaacggg gttagcaaag ggtaatttat ctataatcac gcaagaaagc
     2041 gcctcccctt ttacatcaac accttcccaa aaagtagaag tgcctaaaag cacagcattg
     2101 cccaattgcc tgaatcgaga caggagaatg ggttttgctt catcaccttg aatcaaaagc
     2161 ggatatttta aagtattgct catcatttga gcaaccaatt ttactgcttt atgactggta
     2221 aaaaggaaaa agcaacggcc accgcaagct tctataactg gcaaagcctt ttccagcaaa
     2281 gcttcataat aatgagcatc tttaggatcg ggtattcctc gaggcaaata aagcagagcc
     2341 tgttgctgat aatcaaatgg actggataat aacaaagttt gtactttatc taatcccaga
     2401 ggtttacaaa aactatcaaa aaccgatgcc atagtcagtg tagctgatgt aaaaatatag
     2461 gcacatgatt ggtcttttaa taattgacta aatgattcag ctacatcata cggggtggca
     2521 tgaaaaacaa gagtatgttt aaaacgttct atccagcgaa ttttatgatt attttcctca
     2581 gtgaaagaaa gcaagaccgt ttccaaatcc aaaaggcgct ctttacatct ttttaacccg
     2641 ggaatatcag cagtatcctt tgattccagg cattgtatca actcatcctt taaagataac
     2701 caggtattcc acgcctccat aaactcctta tttcgtttaa ccaaatccca actgattcgt
     2761 tcctcacgag tcggcaaagc attgagcaat tgatccacca gtttgtccgc tttatgactt
     2821 atagacttta gaggttgatt ggctaaatcc aggattggcc actcattaag catatcatca
     2881 accaagtctt tgaattgacg tgttcccagg cgctccccat tgaaattaga ggcgatgtct
     2941 gcaagctgat gagcttcgtc aaacactacg acatcaacac caggtaatag ttcgctaaaa
     3001 ccatcttttt ttaactgaga atcagcaaaa aaaagatggt gattgataac gacaatatct
     3061 gcctccatcg ctcgcttacg tgctttcact aaaaaacagg tttcatgatt cggacattct
     3121 gcaccaagac agttatcggt agtggatgtg acataatgcc atactgagga gtcttcatta
     3181 atttcaggta attccgagcg aacgccttct tgcatttgag acaatttatc tctgacatgg
     3241 agtatttcgt gagcgcattg ggggctttga aattgtcctt cctcagcatg cttctcaact
     3301 cgatattgac aaatataatt ggaacgcccc tttaaattct ggattcgtac cgataaacct
     3361 aaagctctaa tcaaggttgg caaatctttt tgaaaaagtt gatcttggag cgttttggtt
     3421 gctgttgaga taagcgcttt tttaccactt aacaaacaag gcaataaata agcaaaggtc
     3481 ttacctgttc ctgttcctgc ctcagctacc aaaatcgatc gctgaacaat agcattggct
     3541 atagccactg ccaaatcggc ttgtggtgct cttgccacaa agcctggaat agcagtggat
     3601 agtcttccct tctcactgag agttcgccga caggtttcag cgaaagtggt tatttcttcc
     3661 actctttttg caaatattga agtttgtcct ttacttcttc ccaatccttg gcatcagagg
     3721 gagcgtcctt tttagcagta atattaggcc aggttttgga taactcggca tttaattctt
     3781 tgaattgctg ttgttcctct gttaaatcgt cttctgaaac gatagcatta actggacatt
     3841 caggttcaca aagggcacaa tcaatgcatt catcggggtg aatcaccagg aaattaggcc
     3901 cctcataaaa acaatctaca gggcatactt ctacacaatc ggtatacttg catcgtatac
     3961 aactttccgt tactacaaaa gtcatagcaa accttaaaaa ttatctttaa gaaatgactc
     4021 atattaaagc ataaaatacc ctgctgatga tagaggagcc tgatattttt atacccctgg
     4081 gtcccattca ttattcagaa ccaaactgaa atcataaact caaaaccaac ggcatcatat
     4141 acattcttac tgctcataaa atgcacttga agtctcgata taaagatgtt aagtttgctc
     4201 aatttaaatc tattttgttc aatggtctaa tgcactgtct gtgtaattag atatctcgga
     4261 gtacttcatg cctttaaatt taccgcctaa atcatctaaa aatacaatgc ctttggtcat
     4321 tgcatacaat aatgcacctg aagatgacaa gattcaaaaa ttattttatt tacaaaaaat
     4381 caattattta ctgaataaaa ctcaactaaa tgatgatttg ttcgattgga taaacgatgc
     4441 tgaagaaggt ggctggttaa atgagctggc taaattttca attaatccca atgcctcctt
     4501 ttttttaaaa ggaatgcagt ttgccaaagc cattactgaa gaaataaaaa ataagcctga
     4561 aattaacagt tctgaagtaa acatctacca tctcatgcaa gagcgtgacc aactgttaaa
     4621 agaagtagaa tttgaaaaat gcgctactcg ctatgctgaa attaattttc tcctgaatga
     4681 gttagccctt aacgataaaa aaacaaaaga gattgtagaa agacaaacag aaatccttag
     4741 gcttgtcgct cccaaaataa aagccattaa gggagaatcc atagacaatt taccagttat
     4801 accttcttat aaaaccaaag aacttggcaa tcatgtaaat aattttaact tcaaattcac
     4861 aatgagcgga tgggaggctc cttttgtatt tcgtgtagaa gacaggcatg agttaggaaa
     4921 ggaacaagaa ctacactcct acggagtctc aaagtatttt attgaagatt actctgtttt
     4981 tatgatgaga tttaaagcgg aagatggttc tactgtttac aaaccagtta tcttaagcca
     5041 attcgccaat caaaataatc tggaagaaat tgccaaacag ttaaaagatg gcagtccaaa
     5101 aaatattgca ccgcgaattg ggtattactt tgtccagtta accgattttt gtctaaagtt
     5161 aatagagact cataactatc atcccgacat taagttaaat aattttctgg ttcacaataa
     5221 cagagtactg gtgagcgata gaaaaacatt caccacgaat gacaatcctt tagctagtga
     5281 aattctcacc agtcctttat ttgctcccga tgaattttta aaatgtctac tatttaacaa
     5341 agaaggcgac cctgtaggct ataatcgcaa tgctctgtgg aaacgcatga acatgcccca
     5401 attcatggcc tatcaactgg gaatggcttt aaaacaattc ctgattttaa ctcaattgga
     5461 tgaattacca gatgatttta gaaatccgga tcacagcgcc gtatcacatt tcaaaacacc
     5521 atccagacaa atcatcaatc tttcccttct ggttcaggaa ttaacacgcc tcgatcctga
     5581 taagcgaatg accattaaac aattccagac cttgcttaac ttcaaaaact taccgcctga
     5641 tgccttttac cagaaagtgg aagaagtttt cccctcctct caattaggga ttgcagaaga
     5701 tattgaggct cttaataaag tattgaacag cgatttaaaa ggcgaagcgc ttctgaaaca
     5761 agctaatcct gttttcacca aactatcaaa atatgatccc aaagagaccc gattaacccg
     5821 cctagccgaa aaattggcaa ttcgatgttt taacaacgtg tcaaaacctt attttcagaa
     5881 actgtctggt ttgattgaat cagccttaga aaaagatgtt aatgaaatca ggcagctatt
     5941 aaatcctcaa tcaaatagcg agaggctttt acagaaagcc agtcccattt ttatgaaact
     6001 ttttgaaaga cagcctgagg taccccaatt aacagacttg gcgaaacaat tagcggctca
     6061 atgttttgat gaatcttcaa aaaactattt tactcgtcaa ctgcctttat tgattgaaga
     6121 ggaattgtta aaccaggatt gggaacaagc cccctggtat agaaaagccc tgcattggtt
     6181 aacctttgga tacttcagag tcgataacgt cacagaaata tcgtccttga aaatacccga
     6241 gcatacaaaa ggtaaagaat ttcagattta tttttggcaa ctcttatttt taccctctga
     6301 agaaatcaaa aatatgttta cctccaaaga cagccaaata tctgaatttc ttctgggtta
     6361 tatcgaaaag gaaagagaaa aaagagaaac ggaaactcct tcagtccaaa ttcctgttga
     6421 tttaaaagga gaagaatttc agatacactt cccgcagctt gaatttttac cttccaaaga
     6481 ttttgaaagc attggtgaaa aagagggtga gcatttggag tgttttatct ttgccaatct
     6541 tcaagaaata ctctcgcata ataacagcga ttcatcagaa aaaaatagta ctagcgaacc
     6601 ctctgatagc gaaagtgaaa tccatttaaa cgcgggtaac gttgatacaa ttataattgc
     6661 aaacgaacca aatcccaccg acgcgaaacc gcagaaaaaa gacaatgatg gggcaaaaca
     6721 aaataatccg gccaaggcca gtagtcctga aggaatagta tcaactccag aggttgaaga
     6781 gcatcctaaa aagaagataa ccgatgatgc ccccaagcca aaaacaaaac gttctgtaca
     6841 cttctttgat gaggctaaaa aatccaaacc caaggagaaa gaaaatgcct ctcctgctgt
     6901 tgacgaaacg ccccccgcaa agagaaaaaa tgtctgcagg atagatagcg tcaggtccac
     6961 ccttttcaga ggagatggca gccataggca gaaaatcaaa gaacaaagac ccaggttatc
     7021 tgaaatagct tgggagccgc caaaacctaa tctacaatag caaacagagg cttgcttctt
     7081 gaggctttct gcagccaccc tgattataca gggtggctaa cttaacaaat gtcatggtgg
     7141 gcttgaaact ttattttctc tttttgttaa aaaattgcac atgtttttta acaacagcat
     7201 caaactatgt ctatatttat agaaaagaat atacaaaaat cagagtcaaa ataatgactt
     7261 attttttact gtgaagtaag taagaataac tataaatttg aaggaaaaca ttg
//
LOCUS       DACVWI010000146         7098 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.146, whole genome shotgun sequence.
ACCESSION   DACVWI010000146 DACVWI010000000
VERSION     DACVWI010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7098
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.146"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            217..1677
                     /locus_tag="JBH85_11300"
     CDS             217..1677
                     /locus_tag="JBH85_11300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HAU0946789.1"
                     /translation="MNHKPIQFKDLSLIYPHKTCFQDFSGEIHFADRIALIGRNGSGK
                     STLLKMLCGLFLAPAGEIKIPHDVRFGHLPQVLENCPDLSGGQRLNRVLSKILSYEPN
                     VLLLDEPTNHLDRRNRCSLMRMLEHYPGTLIIASHDIELINTVTDTLWHIDLGQVTVF
                     RGTYFDYQQILEDKKASIEQELSRIVRQKKESHLALMKEQERNKRARVQGEKKITQRK
                     WPTIRSHTKLGSAITTGNKRLSHINYKKQQLLEELSSLNYPEVIKPKFRLKGLGHHKP
                     LIRIQDASVAYEAVVILENIHFHLSGCERAALYGKNASGKSTFVKAILGESQIKRTGE
                     WAVPDCNTIGYIDQHYQHLNFNETVLDLMRSSMPHAFHTEIRAHLNDFLFRKNEEVEI
                     KVKNLSGGEKARLSMALIAANPPKLLILDEITNNVDLETRTHIIQVLREFQGAMLVIS
                     HDYDFLESIHIETRYQIHQGKIHHFNEKQLEVVHHD"
     gene            1670..3451
                     /locus_tag="JBH85_11305"
     CDS             1670..3451
                     /locus_tag="JBH85_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0946790.1"
                     /translation="MTNRLPNHLGSFMWHFLKPYRGIVILFILFALLAGFWGPFNSLL
                     IKSFINTLAEKTSQDLSSLYWIAGLLVLNFIVFDNITWRTLGYLNYKYQAIIKNQIIS
                     QTFEYVLGGSTQFFQDNLSGRIADQITTLADNLEIILHRVSVDFLRGASLLVVSFITA
                     YFVNVLFFYILFLWFVAFASFSIWMSARLVQLSDDHASSESQLSGQLVDSLANQSNIR
                     IFSRKIYEVKRMNTFFRLVQQAFQRKELFIVLLCCAQGGMIAVMMGLASITLIYLYGK
                     GLVSIGDFALILGLSMELGHMMWYTMYQVDQFNQALGKARQSLNALVIPHDIKDKSNA
                     SQLVVTQGRIEFSKVKFHYQGGYSLFQNKSVTIEPGQKVGLVGYSGSGKSTFVNLILR
                     LYEVVDGQILIDGQNLAEVTQESLRQAIAMIPQDPTLFHRSLMDNIRYGRTDATDEEV
                     ILASRKAHSHEFISLLPEGYKTLVGERGVKLSGGQRQRIAIARAILKNAPILMLDEAT
                     SQLDSITESNIQESLWDLMQGKTTLVVAHRLSTLLHMDRILVFDKGHIIEDGTHTELL
                     NRGGLYKTLWDAQVGGFLPDQQNEKGE"
     gene            3455..4411
                     /locus_tag="JBH85_11310"
     CDS             3455..4411
                     /locus_tag="JBH85_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946791.1"
                     /translation="MSVKQEQCLIKVVSYDSNWPVQFEQEAERIKKALGSNCIEIHHI
                     GSTSVPDLVAKPVIDMIPVVLDISKVDGANAAIRALGYEAKGEYGIPFRRYFQKGDNR
                     LTHHAHVFELGNPEIERHLKFRDWMRMHPKDREAYARLKQELARRYSDDITAYCLGKE
                     DFIATIDKKAGFNGLRMVKALTTREWDKVRHFRQFYFFDKAGLSDPYTWTFEHNAHVH
                     FVLFQGSEITGYAHLQLWSHNRAALRIIVIDELKRNHQYGTRFLALCEKWLKSQGYQS
                     LHVESSPDALKFYRNNGYIDMPFDDPDGYEGDPRDTAVGKIL"
     gene            4408..4935
                     /locus_tag="JBH85_11315"
     CDS             4408..4935
                     /locus_tag="JBH85_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946792.1"
                     /translation="MIQIEIVIKTLELSDIPILVDAFQKANWEKPASLFEAYYQEQRK
                     SLRIVWLAYSQDQIAGYVTLKWISQYQPFAHQKIPEIMDLNVLPSFRKQGVGTALLQA
                     AEEKAAGESDVVGIGVGLYGGHDGGYGQAQRLYVNRGYIPDGLGVTYSYKPTVPGQIY
                     PLDDDLILWFTKKLR"
     gene            5001..5753
                     /locus_tag="JBH85_11320"
     CDS             5001..5753
                     /locus_tag="JBH85_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAU0946793.1"
                     /translation="MAYTVKQLAKISNVSVRTLHWYDEIGLLKPAYQGANGYRYYEEK
                     QCLKLQQILFFRELGFPLNDIQKLLMQNDFDHIKALRAHKQVLESDINRKNQLIVTID
                     KTIQHLKGKHKMSNEELYYGFDSLRQKQYEKELVKEGVVSQDWMNNYKKKTSQWTQAD
                     KDRFIREGKDINQALILAINNQLKPASPEVQAIIHRHHAWVGWNPNKEGYIGLSQRYL
                     TPEFRKLYERQHPDLLEFIIEGMLFYANKNLD"
     gene            6004..6951
                     /locus_tag="JBH85_11325"
     CDS             6004..6951
                     /locus_tag="JBH85_11325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAU0946794.1"
                     /translation="MTQWFVKDLSQLTSVSVQTLHHYDRIGLLKPSLRLANGYRVYSE
                     KDLLKLQQIIALKFFGFELSQIKTLLAEEGNALNHFNSQARVLEQKASTLLDGAKTLR
                     RIIDSVDKNQSIPWETIIQLIEVYKMTEHLEHGWVKEIFTPDELKQYAEFEKEMKANA
                     TPEQKAAMENNWSQLVDEVKNNLKQDPDSKIGIYLGKKIMDWVNGVYGKKYAHLRTKK
                     FEQGFGEGKGLDEVGLTPQIVSWMDKAMDAYWRDRIYGILDQVGKAPSASVLDLWNEM
                     LVDMYGEESSRKNVIYEIALNDDQVSPEAKAWLRNILDS"
BASE COUNT         2246 a         1235 c         1492 g         2125 t
ORIGIN      
        1 gaaaagataa gccaggaaaa aataattttg aatataatat tgacatcttc aactatttta
       61 atttatattc cctgtaattt tttaccagtt aaaaggtagg tttaggccgt catgaaaatt
      121 acatcttaag tgcgcccaac tatagggcaa agtaaacaaa gtcctttgtg acttttagtt
      181 ttttactgtc ctggcagaca tgcttaagag taaatcatga accataaacc gattcaattt
      241 aaagacctca gtcttatcta tccgcataaa acctgttttc aagactttag tggtgaaatc
      301 catttcgctg atcgcattgc actgattggc cgtaatggct caggaaaatc aacgctactc
      361 aagatgcttt gtggtctttt tttagcccct gcgggcgaaa ttaaaatacc ccatgatgtt
      421 cgctttggtc atttacctca agtgcttgaa aattgtcctg atttaagtgg cggtcagcga
      481 ttaaaccgag tattaagcaa aatactgtcg tatgagccta atgtattgtt gttagatgag
      541 cccacaaatc atctggacag acgtaatcgt tgttctttaa tgcgcatgct tgagcattat
      601 cctgggacat tgattatagc ctctcatgat atagaactca tcaatacagt cacagatact
      661 ctatggcata ttgatttagg tcaagtgact gtattcagag gaacttattt tgattatcaa
      721 caaattcttg aagacaagaa agcatcgatt gaacaggagt tatcaaggat tgtacgacag
      781 aaaaaagaat cacatcttgc tttgatgaaa gagcaggagc gtaataaacg tgcgcgtgtt
      841 cagggtgaaa agaagataac ccaacgcaaa tggccaacga ttcgatctca tacaaagctc
      901 ggttcagcaa ttacaacagg caataaacga ttaagtcaca ttaactataa aaaacaacaa
      961 ttactcgagg agctttcttc tctaaactat ccggaggtaa ttaagcccaa atttaggtta
     1021 aagggacttg ggcaccataa acccttaatc aggattcaag acgcttctgt tgcctatgag
     1081 gctgttgtga ttcttgaaaa tattcatttt caccttagcg gttgcgaacg agcggcatta
     1141 tatggcaaga atgcatcagg taagtcgacc tttgtcaaag cgattttggg ggaaagtcaa
     1201 attaagagaa caggggaatg ggctgtgcct gattgcaata caataggcta tatcgatcaa
     1261 cattatcaac atttgaactt caatgaaaca gtcctggatt taatgcgctc cagtatgccc
     1321 catgcatttc atacagaaat tcgtgctcat ttaaatgatt ttttatttcg caaaaatgaa
     1381 gaagtagaaa ttaaggtcaa aaatctttct ggtggtgaaa aggcaaggtt atcgatggca
     1441 ttgattgctg caaatccacc taaactactt attttagatg agatcacgaa caatgtagat
     1501 ttggaaacac gcactcatat cattcaggtg ctgcgtgaat tccaaggtgc aatgctggtt
     1561 atttctcatg actatgactt tttagaatcc attcacattg aaaccaggta tcagattcat
     1621 caagggaaga tacatcattt caatgagaaa caattagagg tagtgcatca tgactaatcg
     1681 tttgcccaat cacttgggct cttttatgtg gcatttttta aaaccatatc gaggcatagt
     1741 gatattattt atcctgtttg ctctattggc cgggttttgg ggaccattca atagcttatt
     1801 gattaagtct ttcattaaca ctttggctga aaaaacaagt caggacctat cttctttgta
     1861 ttggattgct ggattattgg tattgaactt tattgttttt gacaatataa cctggcgaac
     1921 acttgggtac ttgaactata aatatcaagc gatcattaaa aaccaaatca ttagccaaac
     1981 atttgagtat gtgttaggag gaagcacgca attttttcag gataatctat ccgggcgaat
     2041 tgccgatcaa atcacgaccc ttgctgataa tcttgagatt attttgcatc gtgtgtctgt
     2101 agattttctt cgtggcgctt cattattagt ggtttcattt attacagcct attttgttaa
     2161 tgtcttgttc ttttatattt tgtttctctg gttcgtcgcc tttgcctcat ttagtatttg
     2221 gatgtcagcg cgattagtcc agttgtctga tgatcacgca agttctgaat cacagctttc
     2281 cgggcagttg gtagatagcc tggcgaatca atccaacatt cgtatctttt cacgaaaaat
     2341 ctacgaagtg aaacgtatga acactttctt tcgcttggta caacaggctt ttcaaagaaa
     2401 agagcttttt attgttttgt tatgttgtgc acaaggagga atgattgcag tcatgatggg
     2461 tttggcatcg attactttaa tctatttgta tggtaaaggt cttgtgagca ttggtgattt
     2521 tgccttgatt ctcggactgt ccatggaatt gggtcatatg atgtggtaca ccatgtacca
     2581 agtggatcaa tttaaccaag ccttaggcaa agcaaggcaa agtttgaatg cattggtgat
     2641 ccctcatgac attaaagata aaagtaacgc atctcaatta gtagttaccc aaggacgaat
     2701 tgaattttca aaggtaaaat ttcattacca aggcggttat tctctgttcc aaaataagtc
     2761 tgtaacgatt gaaccaggtc aaaaagtggg tttagtaggc tattcaggca gtggtaaatc
     2821 gacttttgtg aatctgattt tacgacttta tgaggttgtg gatggacaga ttctcattga
     2881 tggtcaaaac cttgccgaag tcacgcaaga aagtttaagg caagctattg ctatgattcc
     2941 tcaagaccca actctttttc atcgaagctt aatggacaac atacgctatg gcagaacgga
     3001 tgcaacggat gaggaagtga tattagcctc caggaaagct cattcacatg aattcataag
     3061 tcttttgcca gaaggctata aaaccctggt aggggagcgt ggggttaaac tatcaggtgg
     3121 tcagcgccag cgcattgcga ttgcccgagc catcttaaaa aatgctccga ttttaatgct
     3181 ggatgaagcc acatctcagc ttgattccat taccgaatcc aatattcaag agagtctctg
     3241 ggatttaatg cagggaaaaa caaccctggt agttgctcat cgcttgtcta ccctcctgca
     3301 tatggaccga attttagtct tcgataaagg ccatattatc gaagacggta cgcacactga
     3361 actattgaat cgtggcggtt tgtacaaaac cttgtgggat gctcaagttg gtggtttttt
     3421 gccagatcaa cagaatgaaa aaggagaata agtaatgtca gtcaagcaag agcagtgtct
     3481 cattaaagtg gtttcttatg attcgaattg gcctgtgcaa tttgaacagg aagcagagcg
     3541 gattaaaaaa gcgttaggca gtaactgcat tgaaattcat catattggtt ccacttcagt
     3601 acctgatttg gttgcaaaac cagtcatcga tatgattcca gttgtattag atattagcaa
     3661 agtagatgga gctaatgctg ccatacgagc acttggctat gaagcaaaag gagaatacgg
     3721 tattcccttt cgccgttatt tccaaaaggg agataatcga ctaacgcatc atgctcatgt
     3781 ttttgagctt ggaaaccccg aaatcgagcg ccacttaaag tttagggatt ggatgagaat
     3841 gcacccgaaa gatagagaag cttatgcacg tttaaaacaa gagttggcgc gccgatattc
     3901 ggatgacatt accgcctatt gcctgggtaa agaagatttt attgcaacaa ttgataaaaa
     3961 agccgggttt aatggattaa gaatggttaa ggcactaaca acacgtgaat gggataaggt
     4021 gcgtcatttc agacaatttt atttttttga caaagcaggg ctttctgatc cttatacctg
     4081 gacttttgag cataatgcgc atgttcattt tgttttattt caaggaagcg aaatcacagg
     4141 ttatgctcat ctgcaattat ggtctcataa cagagcagca ctaaggatta tcgttatcga
     4201 tgagcttaaa agaaaccatc aatacggtac ccgttttttg gcattatgtg aaaaatggct
     4261 caaaagtcag ggctatcaaa gtttgcatgt cgagtcgtca ccagatgctc tgaaatttta
     4321 tcgaaataat ggttatatcg atatgccttt tgatgatccc gatggctatg aaggtgatcc
     4381 acgggatact gcagtaggaa aaatattatg attcaaatag aaattgtcat taaaacactg
     4441 gagctatccg acatccccat tctggttgat gcatttcaga aagcaaattg ggaaaaaccc
     4501 gcttcattgt ttgaagccta ttaccaggaa cagcgaaagt ctcttcggat agtatggttg
     4561 gcttattctc aagaccaaat tgctggttac gttactctaa aatggatatc gcaatatcag
     4621 ccgttcgcac atcaaaaaat tccagaaatt atggatttaa atgtattgcc ctcttttcgt
     4681 aaacagggag tggggactgc tttactgcaa gccgctgaag aaaaagcagc aggcgaaagt
     4741 gatgttgtgg ggattggcgt tggtttatat ggcggccatg atggaggata tgggcaagct
     4801 caacggcttt atgtcaatcg aggttatatc cctgatggtt taggtgtcac ttatagttat
     4861 aagccaactg ttccagggca gatctatcct ttagatgatg atctcatttt atggtttaca
     4921 aaaaaattaa gatgaaatgc ttgaccctta cgttacgtga gcacttatct ttaaatggaa
     4981 tcatttgaga ggacagttta atggcttata cggtaaaaca attagcaaaa atatcgaatg
     5041 taagtgtgcg cactttacat tggtatgatg aaataggctt attaaaacca gcctatcaag
     5101 gtgctaatgg ctatcgttat tatgaagaaa agcagtgctt aaaattacag caaattttat
     5161 tcttcagaga gctgggattc cccttgaatg atattcaaaa actgcttatg caaaatgatt
     5221 ttgaccacat caaagcattg agagcgcata aacaggtttt ggaaagcgat atcaatcgaa
     5281 aaaatcaatt gattgtaacg attgataaaa ccattcaaca tttaaaaggt aagcataaga
     5341 tgtctaatga agaattatat tatggctttg attcactgcg gcaaaaacaa tacgaaaagg
     5401 aattagttaa agaaggcgtg gttagccagg attggatgaa taactacaag aaaaaaacaa
     5461 gtcaatggac tcaggctgat aaagaccgat ttattcggga gggtaaagat atcaatcagg
     5521 cactgatttt ggctattaat aatcaactta agcctgcttc tccagaagta caagccatta
     5581 tccataggca ccatgcttgg gtaggttgga acccaaacaa ggaagggtat attgggttaa
     5641 gccaaagata tttgactcct gagtttagaa agctttatga gcggcagcat cctgatctac
     5701 tcgaattcat tattgaaggg atgctgtttt atgcaaacaa gaaccttgat taagctgaga
     5761 gaagggctgc gtcttatcag ccctatatat attggattga gagcattgtg cgtgttagca
     5821 gaaataatac tgatttatgc ataccagctt atcatgttgt tccaaaccag gagcttttgt
     5881 gagttttttg cttaataatt aatctcttgg taggttagaa aaataatgat tcaagaaatt
     5941 ttaaaaactg cttgacccta ttgttgctat aggcattacc tttgtcttga agggggaaac
     6001 acaatgacac aatggttcgt aaaagattta agccaattaa ctagtgtatc agtgcaaacg
     6061 ttacatcact atgaccgtat aggattgcta aagccttcat tacgacttgc caatgggtac
     6121 cgtgtttact ctgagaagga tttattgaaa ttacaacaga ttattgcttt gaagtttttc
     6181 ggttttgagt tgtcacaaat caaaacctta ctcgctgaag aaggtaatgc gctcaatcat
     6241 tttaacagcc aagctcgggt gttagaacaa aaagcatcca ctttacttga tggagctaaa
     6301 actttgaggc gcatcattga ctctgttgac aaaaatcaat ctatcccatg ggaaaccatt
     6361 attcaactta tagaggtata taaaatgaca gaacatcttg agcatggctg ggtaaaggaa
     6421 atattcacgc cggatgaatt aaagcagtac gctgagtttg aaaaagaaat gaaagccaat
     6481 gccacgcctg agcaaaaagc agctatggaa aacaattggt cccagctggt tgatgaggta
     6541 aaaaataatc taaagcaaga tccagattca aaaataggaa tttatttagg aaaaaagatt
     6601 atggattggg ttaatggggt ctacggtaaa aaatatgccc atttaagaac caaaaaattt
     6661 gaacagggtt ttggggaagg aaaaggtctt gatgaggttg gattaacacc acaaatcgta
     6721 tcctggatgg ataaagcgat ggatgcttac tggagagacc gaatctatgg gattcttgat
     6781 caagtaggaa aagctccttc agcaagcgta ttagatcttt ggaatgaaat gctggttgat
     6841 atgtatggtg aggaatcgtc acgaaaaaat gtcatatatg aaatcgcttt aaatgacgat
     6901 caggttagcc ctgaggcaaa agcctggctt agaaatattt tagattccta aaaatatcaa
     6961 taacactgtt ggatcggtat tgttttaccg atccattcaa cttgatttga taccttcaat
     7021 tattaattga tttagcatct taggcagacc aatcgtctct aaataaattt aattgctata
     7081 gacacaataa accatgat
//
LOCUS       DACVWI010000147         7051 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.147, whole genome shotgun sequence.
ACCESSION   DACVWI010000147 DACVWI010000000
VERSION     DACVWI010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7051
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.147"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1097
                     /gene="dgt"
                     /locus_tag="JBH85_11330"
     CDS             <1..1097
                     /gene="dgt"
                     /locus_tag="JBH85_11330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dNTP triphosphohydrolase"
                     /protein_id="HAU0946795.1"
                     /translation="NLEDKLIFLNSQKNEDIDTLLDTIGLLHDIGHPPYGHGGEQALN
                     YKMRNYGGFEGNAQTLRLINKVDSLNLTYRTLLGVLKYPATYSALVNVKTYPNLDQRI
                     SDQKEITEYLIDNSRWNPPKCYYDSDNPTVLNLLSYITDNERIEFQRSFPAPKPDHKK
                     TKYKTFDCSVMNIADDISYSIHDLEDAIFFRQISMDELVNFFENQNFIQNWSNYPTLL
                     LSDDLKARKKVIGTLIHEAIIHTCIEENSNFNEPIFRYFVKFENEAIETFIKNLKLLV
                     SNNLIKTQHVKSIIHGGKVLIMQLFDAIDVNPEMLLPTEVFQKYSRQTQEADQKRIIA
                     DYISGMTDNYLYKMHQRIFGGNTQSTFDTI"
     gene            complement(1136..1306)
                     /locus_tag="JBH85_11335"
     CDS             complement(1136..1306)
                     /locus_tag="JBH85_11335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946796.1"
                     /translation="MEYNFDMKTLSEINPNPQDSEKPNDLTLEAIEELESVGGKKYSS
                     FKSMIDDLEYDA"
     gene            1561..1932
                     /locus_tag="JBH85_11340"
     CDS             1561..1932
                     /locus_tag="JBH85_11340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAU0946797.1"
                     /translation="MDFWIESTSATGIFKLDLWKKPLWRHFLMSNENSFEKGITMSKN
                     HVSRLQLINEFESAPESTLFNQNTLAAVLDCSVQLLERNRWAGQGVPYLKIGRTVRYR
                     KLDILNYLQHQCVHNTHQEAV"
     gene            1997..3706
                     /locus_tag="JBH85_11345"
     CDS             1997..3706
                     /locus_tag="JBH85_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF927 domain-containing protein"
                     /protein_id="HAU0946798.1"
                     /translation="MNSEQIYHVDFKQSKRIKSFHYAGGLFQLTSDGVIFVGKDKDNN
                     ELPPRWICSSLSVVAKTRDANSGEWGRLLEWVDDDGIKHQWAMPLALLQGDSSDVRRE
                     LARLGLTISPSKTARDLLASYIQVFPVEERARCVDKLGWYKEVFVTANEAIGQSLSVA
                     GSVEDWRNSISRLADGNSRLVFAISAAFAPSLANLVGEDSGGFHFRGASSSGKTTALK
                     VAASVWGKPDSYIRLWRSTANGLEGLAALHNDGLLILNELSQMDPKEAGECAYLLANG
                     QGKTRASRCGTARQSMRWSLLFLSAGEESLTSLMAKAGQRCNAGQEIRLADIEADAGA
                     EMGLFEQLHDHINPAAMSLALKEAASQYHGAVGLAWLHKIVKHRAELIALLTNKIQHF
                     VAKVTKPEHSGQIQRVARRFALVAMAGEIATHYELTGWTRGTACNPAEKCFNAWLKDF
                     GEHGNREDRAILSQVRAFFEKEGASRFENENHPNSERLFNRAGFFHTDSEGFRVFMVL
                     SEVYRKEICQGFEPKMVNKVLINAGWIVPGNDGKASQKRRIKGIGIPRCYIFTEKVWS
                     DDY"
     gene            complement(3903..4244)
                     /locus_tag="JBH85_11350"
     CDS             complement(3903..4244)
                     /locus_tag="JBH85_11350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CGNR zinc finger domain-containing protein"
                     /protein_id="HAU0946799.1"
                     /translation="MEEYYDNGVSDNLLIKLNEILVNVNIQCLFENIENRLVAVHVAY
                     MPYNPPPLAFGAYMFSNVTSLCGLEGLKRCKSNDCLKFFIGRRNAKWCSNSCGSKYRV
                     NKLRKNKRAVY"
     gene            4495..5679
                     /locus_tag="JBH85_11355"
     CDS             4495..5679
                     /locus_tag="JBH85_11355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946800.1"
                     /translation="MSKRVTTADFIRRARDVHGNRYDYTKVFYVAARSKVVIICPEHG
                     EFKQIPAGHLSGRGCHECGGNKPLTIARFIERASKKHGNHYDYSHVQFQNVESKIEII
                     CPDHGLFFQQLMSHLKGFGCPQCGRINTANKLSHSIQRFIEDAKRAHGNKYDYSQVRY
                     VNALTKVTIICPDHGPFDQKPSNHIRDVGCPKCGDESAAMIRTRTTEEFVQEAKEVHG
                     ALYDYSKVDYKSSHKHVEIICLVHGSFWQSPVNHVRGNKSGCPGCAVSGFDQTKPGLL
                     YYIAVKKDDGELLYKIGITNLSIERRFPSVDRARIRVIRIWRFELGQIAAEYEANIIS
                     QFNRYRYYGPAVLMGSGNTELFTKDILSLDKSHHDLRDAVVDLEGNLISRPRQLEFDL
                     SE"
     gene            complement(5797..6924)
                     /locus_tag="JBH85_11360"
     CDS             complement(5797..6924)
                     /locus_tag="JBH85_11360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4263 domain-containing protein"
                     /protein_id="HAU0946801.1"
                     /translation="MSKKQRVIMGTITYSYKSTSSSSAEIEDIEFSRTSTTRRIIRPM
                     IVENNERPDASIKIEIIHQKAEKGLFEDIPTEKLSKYKAKDIGKLVLSSEETLSLFNH
                     LCNLYLIHKENGIPSGYHEFEVDENSRLMSIDSKRAAIIETLIQQGYSEEVWEKLVEN
                     SPDLATKLSIARLYQTRMTALEQFRTMLSCDHSEQDWQSFFENNNWIFGYGLNYKILK
                     AITGQPHYGGVVIDGSGTNKGDFLSATQGYLKFTVLVEIKRSDTKLLASKRYRNDVVL
                     PSEDLIGGVSQLRVNGRTWEQQGSQLPKNRDLLEDDSIYTIQPRKILVIGNTNELNDR
                     LKRENFELFRRGQSDIEILTFDELLNRAQFITEHTEAIKDG"
BASE COUNT         2183 a         1284 c         1347 g         2237 t
ORIGIN      
        1 aaaatctaga agataagctt attttcttaa actctcagaa aaatgaagat atagacactt
       61 tgctcgatac aattggatta cttcatgaca ttggacaccc accatatggt catggtggtg
      121 agcaagcact aaattataaa atgagaaact atggaggatt tgagggaaat gcgcaaactt
      181 taagactaat taataaagta gattctttaa atcttactta tagaacttta ttgggagtac
      241 taaagtatcc tgcaacctac agtgcattgg tgaatgtaaa aacatatcct aatctagatc
      301 aaagaatctc cgatcaaaaa gagattacgg aatatctaat agataattca agatggaatc
      361 ctccaaagtg ttattatgat agtgacaacc caacagtcct gaatctatta agttatatta
      421 ctgataatga aagaatagag tttcaaagat cttttccagc cccaaaacca gatcataaaa
      481 aaacaaaata taaaacattt gattgcagtg ttatgaatat tgctgatgat atttcttaca
      541 gtattcatga tctagaagat gctattttct ttcggcaaat tagtatggat gaattggtta
      601 atttctttga aaatcaaaac ttcattcaaa attggagtaa ttatccaaca cttcttcttt
      661 cagatgattt aaaagccaga aaaaaagtta tcgggacatt aattcacgaa gcaataattc
      721 atacttgtat tgaggaaaat agtaatttca atgaacctat atttagatat tttgtaaagt
      781 ttgaaaatga ggctattgaa acatttataa aaaacctaaa actacttgta agcaataatt
      841 taattaaaac tcaacacgta aagtcaatta ttcatggagg aaaggtacta attatgcagc
      901 tatttgatgc aattgatgtt aatcctgaaa tgttattacc gacagaagta tttcaaaaat
      961 atagcagaca gacccaagaa gctgaccaaa aaaggattat cgctgattat atcagtggca
     1021 tgacggacaa ttatctctat aaaatgcacc aaagaatttt tggtggaaac actcaaagta
     1081 catttgacac tatctaattg accgacctaa atctactgga gttgaacgaa ttatctcatg
     1141 catcatattc caaatcatca atcattgatt taaaagatga atatttcttt cccccgacac
     1201 tctccagctc ctctatagct tcaagggtta gatcattggg tttctcacta tcctgaggat
     1261 taggattaat ttctgataat gttttcatat caaaattata ctccatttcc cctatattga
     1321 gagcagcctt aatgattttt agtggtacga gtggaactaa ggggacatct tgatattact
     1381 aggccataag cgtgccaccc tcaaaatatc ccatggtacg cgtgggacaa ataactcata
     1441 tttgttcact ctaattacac tttctttgaa tttgtttcca attgttgact ttaattttca
     1501 aaccacgtaa taatctgttc gttgttttaa atagctttat gaaaatggct ttaaagctat
     1561 atggattttt ggatagaaag taccagtgct actggaattt tcaaattgga tttatggaaa
     1621 aagcctcttt ggcgacattt tttaatgtcg aatgaaaatt cttttgagaa aggtattact
     1681 atgtctaaaa atcatgtatc gcgcttgcaa ctcatcaatg aattcgaatc tgctccagaa
     1741 tctaccctct ttaatcaaaa tacacttgcc gcagttttag attgctcagt tcaattactt
     1801 gaacgtaatc gttgggctgg tcagggtgtg ccctacttaa aaattggtcg caccgttcgc
     1861 tatcgcaaat tggatattct taattatctt caacaccaat gtgttcataa cacccatcaa
     1921 gaagcggttt agcctttttt tgaataattg gaaggtggta gctcaccttc ctgcgacagt
     1981 tgttggagag aataaaatga attcagaaca aatatatcat gttgatttta aacagtctaa
     2041 acgcatcaaa tcgtttcact atgcaggtgg actattccag ttaacctcag atggggtaat
     2101 ttttgttggt aaggataaag acaataatga gctacctcct cgatggattt gctcttcgtt
     2161 gtctgtggtc gctaaaactc gtgatgccaa tagtggcgaa tggggtcgat tacttgagtg
     2221 ggtggatgat gatgggatta agcatcaatg ggctatgcct ttggctttat tgcaaggaga
     2281 ctccagcgat gtaagacggg agctggcgcg attgggattg accatttcac ccagtaaaac
     2341 agctcgtgat ttattagctt cctatatcca agtctttcca gtcgaagagc gtgctcgttg
     2401 tgtcgataaa ctgggctggt ataaagaagt ctttgttacc gctaatgaag ccatagggca
     2461 atccctgtct gttgcaggta gtgttgagga ttggcgaaac tctatctcac gattagcaga
     2521 tggtaattct cgcttggtat ttgctatttc cgcagccttt gctccaagcc ttgccaatct
     2581 tgttggtgaa gattcaggtg gctttcattt cagaggagct tcctcttctg gtaaaacaac
     2641 cgctttaaaa gtagcagctt ctgtttgggg taaaccagat agttatattc gtttatggcg
     2701 aagcacagcg aatgggttag aaggattggc agcacttcat aatgatggat tattaatcct
     2761 caatgagctg agccagatgg atcctaaaga agctggagaa tgtgcctatc tacttgcaaa
     2821 tggtcaaggt aaaacaagag cttctcgttg tggtaccgca agacagtcca tgcgttggtc
     2881 attacttttc ttatcagctg gtgaggagtc attaacttca ttaatggcaa aagctgggca
     2941 gcgatgcaat gcaggtcaag aaattcggtt agcagatatt gaagcggatg ctggtgcaga
     3001 gatggggtta tttgagcagt tacatgatca tataaaccca gccgctatgt cactcgcatt
     3061 aaaagaagct gccagtcaat atcatggtgc tgttggtcta gcatggctcc ataaaattgt
     3121 gaaacatcgc gccgaattga tcgccctact cactaataaa attcagcatt ttgttgctaa
     3181 agtcactaaa ccagaacatt ctggtcaaat tcaacgagta gccagacgct ttgcgttggt
     3241 tgccatggct ggagaaatag cgactcatta cgaactaact ggatggacac gtggcacagc
     3301 atgtaatccg gcagaaaaat gctttaacgc ttggctaaaa gattttggtg agcatggtaa
     3361 tagagaagac cgagctatac tgtcacaagt tcgtgcgttc tttgagaaag aaggagcgag
     3421 ccggtttgaa aacgaaaatc atcccaacag tgaacgcctt tttaatcggg ctggcttttt
     3481 tcacacggac agcgagggct ttcgtgtttt tatggtttta tctgaagtgt acaggaaaga
     3541 gatctgtcaa ggatttgagc ctaaaatggt gaataaagtt cttattaatg ctggctggat
     3601 agtccccggt aatgacggca aagcatctca aaaacgaaga attaaaggga ttggtattcc
     3661 tagatgttat attttcactg agaaagtttg gtctgacgac tattaattgt cccactcgtt
     3721 ccactgtcga ttttgatagt ggaacatcta aagtccagta actactgggg tgttccactt
     3781 gtcccagtag ttccacgtat tttttagatg taggtaaaaa tctattaggt tgtatcgact
     3841 ttaatgaaga tgatttccca tactacaact aaatgtaata cgggaaaatc attgtacctt
     3901 gttcaataca cagcacgctt gttctttcgc agtttattta ctctgtattt agagccacac
     3961 gagtttgagc accatttggc attcctgcgg cctataaaaa acttaaggca gtcattactt
     4021 ttacaacgtt tcaatccttc aagtccacaa agtgaagtaa cattcgagaa catatatgcc
     4081 ccgaaagcta atggtggtgg attatatggc atataagcaa catgcactgc caccagccta
     4141 ttttctatgt tttcaaaaag gcattgaatg ttaacattca cgaggatttc gttaagtttg
     4201 attaataagt tatcagatac cccattgtca taatactctt ccatgcactc ataaataaaa
     4261 gcctctaagg ctggtatggt acttttagaa ttaataccgt ttttactgtc taaatgaatg
     4321 ttagctgctt ctattaaagt agaagcttcg ttactgctgt atagcttaag ttcttttcct
     4381 gtattgatat aaaaatagtc atgtaacgct tttttcaatt taaatcccta ttgaagtcgt
     4441 aacggctttg atgtttatat ctcgtaacaa tatcattttc aaggttgtga gaaaatgtcc
     4501 aaacgtgtta ctacagcaga tttcattcga cgtgctcgtg acgtgcacgg caatcgctac
     4561 gattacacaa aagtgtttta tgttgcagct agaagtaagg tcgtaataat ttgtcctgag
     4621 catggtgaat ttaagcaaat acctgcaggt catctctccg gtcgcggttg ccatgaatgc
     4681 ggtggaaata agccactgac cattgcaaga tttatcgagc gtgcaagtaa gaagcacgga
     4741 aaccattatg actattccca tgtacaattt caaaacgttg aaagtaagat tgaaattata
     4801 tgtccggatc acggcttgtt ttttcagcaa ttaatgtcac atctaaaggg ttttggttgc
     4861 cctcagtgcg gtagaattaa tacagctaat aaactgagtc attccatcca acgtttcatt
     4921 gaagatgcga aaagagcaca tgggaataag tatgactatt ctcaggtacg gtacgtcaat
     4981 gcattaacca aggtaactat catctgccca gaccatggtc cattcgacca aaagccgtcc
     5041 aatcatataa gggatgtagg atgtccaaag tgcggcgatg aaagtgcggc aatgataagg
     5101 actcgaacaa ctgaagagtt cgttcaggaa gcaaaggagg tgcatggagc tctttatgac
     5161 tattcaaagg ttgattacaa atcatctcac aagcatgttg aaataatatg cctagtacat
     5221 ggttcgtttt ggcaatcccc tgttaatcat gtaaggggta ataaatctgg ttgtccaggt
     5281 tgtgcggtgt caggttttga tcaaacaaag cccggtttgt tgtattacat tgctgtaaaa
     5341 aaagacgatg gtgaacttct atacaagatt ggtataacaa acctctccat agaacgtcga
     5401 tttccctccg tagatcgtgc tcgaataagg gttataagga tctggcgatt tgaattaggt
     5461 caaattgcgg ctgagtatga agcaaatatt attagccaat ttaatcgata tagatattat
     5521 ggtcctgcag tattaatggg aagtggaaat accgaattgt tcaccaaaga catactaagt
     5581 ttagacaaga gtcatcatga tttaagagat gcggttgttg atttggaagg caatttgatt
     5641 tctcgaccaa gacagttaga atttgattta tcagagtaat aaaacacaga gatgaggcat
     5701 ttcccccaca atgaatctat tagacatcat agatgctgga gaaaatgact caaattactc
     5761 ctgcttaagt gcatcattaa tttccttcaa tgaatactag ccatctttga ttgcctcagt
     5821 gtgttctgtt atgaattgtg cccgatttaa cagttcatcg aaggttagga tttcaatatc
     5881 actttgtcct ctacgaaata actcaaagtt ttcacgcttt aatcgatcgt ttaattcatt
     5941 agtattgccg ataaccaaaa tttttcgtgg ctgaatagta taaatagagt catcttctag
     6001 gagatctcta ttttttggta gttgagatcc ttgctgctcc caggttctac cattcactct
     6061 taattgagaa acccctccta ttaaatcttc actaggtaat accacatcat ttctatatct
     6121 ttttgaggct aatagcttgg tgtctgatct tttaatttca actaataccg taaattttaa
     6181 atatccttga gtagcactta agaaatctcc cttattagtt ccacttccat caattactac
     6241 gcctccataa tgaggttgtc ctgtaatggc ttttaaaatt ttataattca atccataacc
     6301 aaatatccaa ttattattct caaaaaagga ttgccaatct tgctcactat gatcacagga
     6361 tagcattgtt ctaaattgct ctaaggcagt catgcgtgtt tgatataacc gagctatact
     6421 aagtttagtc gctaagtcag gagaattttc aaccaatttt tcccatactt cttctgagta
     6481 tccctgctga attagtgttt caataatagc tgctcttttc gagtctattg acattaatct
     6541 actattttca tcaacttcaa attcatgata gccagacgga attccatttt ctttatgaat
     6601 taagtatagg ttgcaaagat gattaaaaag agacaatgtc tcctcactac ttagaactaa
     6661 cttaccaata tctttagcct tatacttaga caatttttca gttggaatat cttcgaacaa
     6721 tcctttttct gctttttgat gaataatctc aattttgata ctagcatctg gtcgctcatt
     6781 attctcaaca atcataggtc gaattattct tcgtgttgtt gatgttctac taaactcaat
     6841 atcctcaatt tctgctgagg agctcgaggt agatttataa ctataagtaa tcgtccccat
     6901 tattaccctt tgttttttag acagatatta ggctctaccc caacaaaggg ggcactttaa
     6961 tcaagttagt ataaactaac ctcttgattt cgcgatcaaa aaggagatta aagtgccgag
     7021 acatgatgtt atcctaaatt tacctggttt t
//
LOCUS       DACVWI010000148         7014 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.148, whole genome shotgun sequence.
ACCESSION   DACVWI010000148 DACVWI010000000
VERSION     DACVWI010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 7014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7014
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.148"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(8..565)
                     /locus_tag="JBH85_11365"
     CDS             complement(8..565)
                     /locus_tag="JBH85_11365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HAU0946802.1"
                     /translation="MINEIKQDSEKRMKKTIEALHTDMSKIRTGRANASLLDHVMVDY
                     YGSPTPLSQVANITTSDSRTILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPM
                     PPLTEERRKELIKVVRHEGEQGRVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAI
                     QKLTDRYISEVDAVLAEKEKDLMEI"
     gene            complement(555..1298)
                     /gene="pyrH"
                     /locus_tag="JBH85_11370"
     CDS             complement(555..1298)
                     /gene="pyrH"
                     /locus_tag="JBH85_11370"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HAU0946803.1"
                     /translation="MMNESQPKLKYKRILLKFSGEALMGKSQFGIDPSVLDSLARDIA
                     ELIHMGVEVGLVLGGGNLFRGKALSQAGVGRVTGDHMGMLATVMNALALRDALERIDL
                     PARIMSAIPMLGVVDPYHRRKAITHLRNGQVVIFAAGTGNPFFTTDTAACLRAIEIGA
                     DIVLKATKVDGVYSADPLKNSDAKRYDYLTYKEVLTKGLEVMDSTAICLCQDQGMPLQ
                     VFDMAAPKALKRIVTGERVGTIVGANHDQ"
     gene            complement(1295..2173)
                     /locus_tag="JBH85_11375"
     CDS             complement(1295..2173)
                     /locus_tag="JBH85_11375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095740.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HAU0946804.1"
                     /translation="MSTISAALVMQLRERTGAGMMECKKFLIATNGDIEQAIIEMRKA
                     GQAKADKKADRVAAEGIIVIARSSDERTAVMLEINSETDFVARDENFTNFANAVADVA
                     LTSLPKNIEDLSNQALSSGATVEQARQELVAKIGENIKLRRLEKMHCDGVIGYYLHGS
                     RIGVMVALKNGSEALAKDIAMHVAASKPMVVSRDQVPAEAIENEREIFTAQAKESGKP
                     QEIIDKMIDGRINKFIDEVSLLGQPYVKDPNIKVGQLLKEKNAEVISFVRYEVGEGIE
                     KKEDNFVEEVMAQVRT"
     gene            complement(2239..3003)
                     /gene="rpsB"
                     /locus_tag="JBH85_11380"
     CDS             complement(2239..3003)
                     /gene="rpsB"
                     /locus_tag="JBH85_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095741.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HAU0946805.1"
                     /translation="MNNVSMRELLEAGAHFGHRTRFWNPKMSEYIFGSRNKIHIINLE
                     KTLPMLSDVTNYVSRLAANKAKILFVGTKRAAQDSIREHAKRCGMPYVDHRWLGGMLT
                     NYKTVRQSIFRLKELKEMKEKGLFNDMIKKEALMLTRELEKLERSLGGIENMGGLPDA
                     LFVVDVGFEHIAVEEARRLRIPVIGVVDTNNSPDNIDYVIPGNDDSMRAVDIYVRCVA
                     DAILDGKNSNTVGRVSSDSEFVEVTSNSNEEEKSGE"
     gene            3337..3747
                     /locus_tag="JBH85_11385"
     CDS             3337..3747
                     /locus_tag="JBH85_11385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946806.1"
                     /translation="MSKKSICLATLALIFTFGQPVFANSSEATQTKPCHCHDHKKILS
                     QLNLTQEQKTKIKTIKIQAQKSIKENYRQLKAIKEQINALIANEKLDEAKLDSLINQR
                     NKITGTMLKNRVMMKNQIYNQLTNEQKSQYKKNM"
     gene            4257..4715
                     /locus_tag="JBH85_11390"
     CDS             4257..4715
                     /locus_tag="JBH85_11390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1716 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946807.1"
                     /translation="MRGHMIFLSIPKGMEFKQITEKDNTNDYFVDPNGKLPRINIQAL
                     VKDALQYNKGRKKEISLPDFTIYRHKPPYRDELFLQYNPDHNGKYFTKESVNLVNGKE
                     FIKYKTPATSYGTFWFQKVQLSESRMDEVLAKRSEQRENRRHTGDSPNPT"
     gene            complement(4779..6467)
                     /locus_tag="JBH85_11395"
     CDS             complement(4779..6467)
                     /locus_tag="JBH85_11395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1717 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946808.1"
                     /translation="MPVRYSGFDYDGCVGVTNLINIVAQNPKLAQRIRETSNYYTKEV
                     ALIASNRQSDRDDKRNARSNGNGSCFIQIQKLCTDLGMEFDPFLLADAYNLVPAGTSL
                     HEATNPANGAKIQNGWLHDKSKASLVYAHMQRASSLEAREQIDYFFYDDREDILEGLY
                     QFFSANPELIPSNVTMHLVKYACSRENVHTMDNYKIPVQGKGFTNPDYVKTIKAFGDK
                     AIENARDVYDIDGKEINAAGVRQAKYNCNFEFEANKLQPMKFVNNFNSPAELIKAHEQ
                     AIEKIKLGAFELYKAKINVITTLSNEQKVFLIRAKAQQWNLLCDEGQWNNPIFTLQAI
                     MAEKSDRFFLPQYAFTAKMLIKNYQEARENSKDGSRFWEQINAFIKSMNALKDPMRNA
                     QSIFEVFKKNSYSVKAVDGFVKKVVEVMNALMDKYPQRSTTEMVACMRILESNLQKMV
                     NFFSLVDRLITIYRGCTTAGLNFNKILTVVREALEEMKMITDSGDNYSTTLIDLDKVI
                     TAANNRLESLTYPKEYSTKNFHSQESYKVVGAYLCMQSQLIQKLDTKASTALAI"
BASE COUNT         2184 a         1493 c         1123 g         2214 t
ORIGIN      
        1 ctatacctta aatttccatt aaatcttttt ctttctcggc taatactgca tcaacttcag
       61 aaatatatct atcagtcagc ttttggatcg cttctgctgc acgtcgttca tcgtcttcag
      121 aaattgcttt ttctttaaca agttccttta gctgattatt ggcatccctt ctgatatttc
      181 gaattgaaac tcttccttgt tccccttcat ggcgaacaac tttaatcaat tcctttctgc
      241 gttcctctgt taaaggtggc atcggaactc gaatggctgt tccagcagtt gcaggattca
      301 aacccaaatc agagtttagt atagcctttt caatagctgc gaccatagat ttttcccagg
      361 gtgtaactaa aatagttcgg gagtcactgg tagtgatgtt ggcaacctgg cttaaaggtg
      421 taggacttcc ataataatca accatgacat gatctaaaag actggcattc gccctgccgg
      481 tacggatttt tgacatatcc gtatgcaaag cctcaatagt ctttttcatg cgtttttctg
      541 aatcttgctt aatctcattg atcatgatta gctccgacta tagttcctac tcgttctcca
      601 gttacaattc gttttaatgc tttaggagcc gccatatcaa acacctgtaa aggcattccc
      661 tgatcttggc acaaacaaat tgcagtggaa tccatcactt ccaaaccttt ggttaaaact
      721 tctttgtaag tcaaataatc ataacgcttt gcatcagagt ttttaagtgg gtcagcagaa
      781 taaactccat ccaccttagt tgcttttaaa acaatatctg cgcctatctc aattgccctc
      841 aaacaagcag cagtatctgt tgtaaaaaag ggatttcctg ttccagctgc aaaaatcacc
      901 acctgaccat tgcgcaagtg agtgatagct tttcttctat ggtatgggtc aactacccca
      961 agcattggaa tagctgacat aatacgagca ggcagatcaa ttcgctccaa agcatcacgg
     1021 agtgccaaag cattcataac agtggccagc atccccatat ggtctcctgt cactcgtcct
     1081 acgcccgcct gagagagtgc tttccctctg aacagattac ctccacctaa aaccaaacca
     1141 acttccacac ccatatgaat taattctgct atgtctcgag ctaatgagtc aagaactgaa
     1201 ggatcaatcc caaattgaga tttccccatc agcgcctcac cactaaattt aagcagaatg
     1261 cgtttgtatt ttaatttagg ttgactttca ttcatcatgt acgaacctga gccatcactt
     1321 cttcaacaaa attgtcctct tttttctcta ttccttcccc tacttcataa cgaacaaagg
     1381 atattacttc agcatttttc tcttttagaa gttgacccac tttaatgtta ggatctttta
     1441 cataaggttg tcctaacaag cttacctcat caataaattt attgattcgc ccatcaatca
     1501 tcttgtcaat gatctcttgc ggcttaccac tctcttttgc ttgagcagtg aatatttctc
     1561 tttcgttttc aatcgcttcg gctggtacct gatcacgact aaccaccatc ggtttgctgg
     1621 cagcaacatg catggcaata tctttagcca atgcttcact tccattcttt aatgcgacca
     1681 taactcctat acgcgaacca tgcaaataat acccgattac accgtcgcaa tgcatttttt
     1741 ccaatcggcg taatttaata ttttcaccaa ttttagcaac cagctcctgt cttgcttgct
     1801 caacagtagc accagaagat aatgcctgat tggacaagtc ttctatgttt tttggaaggc
     1861 tggttaatgc aacatcggca acagcatttg caaaattagt gaaattctca tctcgtgcaa
     1921 caaagtctgt ttcactatta atctcaagca ttaccgctgt acgttcatca gaagaacgtg
     1981 caataacaat tataccttct gctgcaactc tatctgcctt tttgtctgct tttgcctggc
     2041 cagctttacg catttcaatg attgcttgct cgatatcacc gttagtagct attagaaatt
     2101 ttttacattc catcatacct gcgcctgtgc gctcacgcaa ttgcattact aatgcagcac
     2161 taattgttga cattttgatt tctccacata gcaaaaaggg ggcttattaa attaacgccc
     2221 cctttattca aatagtaatt attctccgga tttttcttct tcattagaat ttgaagtaac
     2281 ctcaacaaac tctgaatcag atgatactct tcctacagta ttgctatttt taccatctaa
     2341 aatagcatca gcgacacagc gaacataaat gtccacagca cgcatagaat catcattgcc
     2401 tggtataaca taatcaatgt tgtcagggct attattggta tcaacaacac caattaccgg
     2461 aattcttaat cgacgcgctt cttcaacagc aatatgttca aaaccaacat caaccacaaa
     2521 taacgcatca ggtaggccgc ccatgttctc gattccacca aggctacgct ccagtttttc
     2581 aagctctctt gtcagcatta gcgcttcttt cttaatcatg tcattaaaca atcccttttc
     2641 cttcatttct tttaattctt ttaaacggaa tattgattga cggactgttt tatagttggt
     2701 cagcatacct cctaaccatc tatggtctac ataaggcatc ccgcatcgtt ttgcatgctc
     2761 tcgaatgctg tcttgagctg ctcttttagt gcctacaaaa agaatttttg ccttgtttgc
     2821 tgccaatcga ctaacgtaat tcgttacgtc actcagcatg ggtaatgttt tttcaaggtt
     2881 aatgatatgg attttatttc ttgagccaaa aatgtattca ctcatttttg gattccagaa
     2941 acgtgttctg tgcccaaaat gagcacctgc ttcgagcaat tcacgcatac taacattatt
     3001 catatatata tctccagggt taagcctcca cgcttcccat acgaaaccca ccaagggacc
     3061 ctatcgcatg tgacgaaacg tgtgtgtatt taaagcgcgg tatttataac atattcatgc
     3121 caattcagca atcaaattaa cattgctctc tgtacatgac aaaaatatgt catgtacaaa
     3181 tcattatgta tgaccacagt aattagacaa agcctattag gaaataagtc tatattaatt
     3241 tgtacatttt gatttatact gctatcagca tggaagtttt aaaaatgttg tactcaggag
     3301 aatcctatta acgataacat ttaagaggaa acgataatga gtaaaaaatc tatctgttta
     3361 gccacgctcg ccttgatatt tacctttggt cagcctgtct ttgccaactc aagcgaagct
     3421 acacaaacaa agccttgtca ttgccatgat cacaaaaaaa tactcagtca gcttaattta
     3481 actcaagagc aaaaaaccaa aatcaaaaca atcaaaatac aagcccaaaa atcaatcaaa
     3541 gaaaattata gacaacttaa agcgatcaaa gaacaaatca atgcgctcat tgcaaatgag
     3601 aagcttgatg aagccaagct ggatagttta atcaaccaaa gaaataaaat aacagggact
     3661 atgctaaaaa atcgtgtaat gatgaaaaat caaatttaca atcagctaac gaacgaacaa
     3721 aaatcacaat acaaaaagaa tatgtaaaac ctgattggta ccgataataa aaaattcggt
     3781 accaatctat cccaactctt cagatataat cattgctgta attatgatct ttctcactgt
     3841 tgcttcctga acaatatttt ctgaacgcaa aaaaatgggc aaaccttctc tctctaccat
     3901 taaaaaacag atgatatttc gctcagtatg ctaacccata gcatgctgca gcagctgcac
     3961 tggcaatgat gcaaagtgca aatattatag ttctcgccat attcttcttt gttttgggtt
     4021 tcataacaaa tcctggaatg acggttatcc tgattgatat ttcatttaaa ttatagttca
     4081 aattttatgc acatccagac ccacatattg attgccctta cactgagtag catggagctt
     4141 tactacaaat tcattgcaaa acacttgcta caattattga cttatgaccc aatttagaac
     4201 aacctatatc ggcgatgagc aatattgttg ttgcagaata aaaaagaaac ccaattatga
     4261 gaggacatat gattttttta agtattccta aagggatgga atttaagcaa attacagaaa
     4321 aagacaatac gaacgactat tttgttgatc cgaatggaaa gttaccacga attaatattc
     4381 aggctttagt taaagacgct ctgcagtaca acaaaggtag aaaaaaagaa atctccctgc
     4441 ctgacttcac tatttatagg cacaaaccac cttatagaga tgaactcttc cttcagtata
     4501 atccagatca taatggtaaa tactttacaa aagaatctgt aaatttggtg aatggtaaag
     4561 aatttattaa atataaaact cctgctactt catacggcac tttttggttt caaaaagtac
     4621 aattatccga aagcagaatg gatgaagtgc ttgccaagcg aagtgaacaa cgagaaaatc
     4681 gcaggcatac aggggatagt ccaaacccaa cataatcaaa caagaatagt gaaaaggcat
     4741 gtactagcat gccttttttc aaaaagaaca aaatgaaatt aaatggccaa tgcagtagaa
     4801 gctttagtgt ctaatttttg aattaactga ctttgcatgc acaaatatgc gcctacaact
     4861 ttataagact cttgtgaatg gaaatttttt gttgagtatt ctttaggata agtgaggctt
     4921 tccagccgat tatttgctgc ggttatcact ttgtctaaat caatcaaggt ggtagagtaa
     4981 ttatcaccac tgtctgttat cattttcatt tcttcaagag cctcccgtac aacagtcaga
     5041 attttattaa aatttagacc agcagtggtg caacctcgat agatagtaat taggcgatcg
     5101 acaagagaaa agaaattaac catcttttgc aaatttgact caagaatacg catacatgct
     5161 accatttctg ttgtgctgcg ttgaggatat ttgtccatta aagcgttcat cacttcgaca
     5221 acttttttca caaacccatc tacagcttta acggaataac tgtttttctt aaacacttcg
     5281 aaaatagatt gagcatttct cattggatcc tttaaagcat tcatactttt aataaacgca
     5341 ttaatctgct cccaaaagcg gctgccatcc ttgctgtttt ctctagcttc ttgatagttt
     5401 ttgattaaca ttttcgcagt aaacgcatat tggggtaaga aaaagcgatc gcttttctca
     5461 gccattatcg cctgcaaagt aaaaattgga ttgttccatt gtccttcatc acacaggaga
     5521 ttccattgct gggctttcgc tctgattaaa aagacttttt gttcatttga taacgtagtg
     5581 ataacgttga tttttgcttt atacaattca aatgcaccaa gctttatttt ctctatagcc
     5641 tgttcatgag ctttaattaa ttcagcggga gaattaaaat tattaacaaa cttcattggt
     5701 tgtaacttat tggcttcaaa ttcaaaatta caattgtatt ttgcctgacg aactcctgca
     5761 gcattaattt cttttccatc tatgtcataa acatctcttg cattctcaat agctttatcg
     5821 ccaaacgctt tgattgtttt gacatagtca ggattagtaa agccctttcc ctgaacagga
     5881 attttgtaat tgtccatggt atggacattt tcacggctac aggcatattt aactaaatgc
     5941 attgtaacgt tagatggaat aagctctgga tttgctgaga aaaattgata caaaccttca
     6001 agtatatctt ctcgatcatc ataaaaaaaa taatcaatct gctctctagc ctccaaggaa
     6061 gaagctcttt gcatgtgtgc atacacaagc gaagctttcg atttatcatg taaccagccg
     6121 ttttgaattt ttgcgccatt tgcaggattc gttgcctcat ggagactagt acctgctggc
     6181 accaaattgt atgcatcagc taataaaaac ggatcaaatt ccatgcctaa gtcggtgcac
     6241 agtttttgaa tctggataaa acaagaacca ttgccattgg agcgagcatt acgcttatca
     6301 tcgcgatcac tttgccgatt cgaagcaatt agcgcgactt ctttagtata gtagtttgaa
     6361 gtttctcgaa ttctttgggc aagctttgga ttttgtgcaa cgatatttat tagattggta
     6421 acaccgacgc aaccatcata atcaaaacct gaataacgaa ctggcatttt attttcctct
     6481 caaaaagatt gcataaccac tgtcacttta attaaggaga aaatttcaaa catggaagtc
     6541 ggaacatcgc cttgagtaaa gtgatacttt cttcatagcg acgcacccgt ttcctcatga
     6601 aactagaaat agccagtcct ctaggcaatc cttatagaga agacacatcg aaattttgct
     6661 aaacaatatt aagcaaagtt cataatgtta acattatgca aagatatgtg tcaatttctt
     6721 atttattgtt gtttttctat tcatagttca aacagcccca atcaggttca atttggactg
     6781 tataagctct catataacac gagttaatag agagctggga atttctgata taagatatgt
     6841 aaacaggaaa tatcaaatca aaaaaacttg ctttcaagtg tgatacttga atccataata
     6901 cctaattgct ctaacaagtc ttcaggcaaa tgcaaaccgc tctccctgag ctgcattaat
     6961 aaaatactac gctcatttga gttaaaatct tttatcgctt ttctaaaagc attg
//
LOCUS       DACVWI010000149         6950 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.149, whole genome shotgun sequence.
ACCESSION   DACVWI010000149 DACVWI010000000
VERSION     DACVWI010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6950
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.149"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            96..860
                     /gene="map"
                     /locus_tag="JBH85_11400"
     CDS             96..860
                     /gene="map"
                     /locus_tag="JBH85_11400"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HAU0946809.1"
                     /translation="MGVTIKTPDEIEKMRVAGRLAAEVLEMIGPYVQVGITTDELNTI
                     CHDYIVNVQKAIPAPLNYNGFPKSICTSINHVVCHGIPGKKTLKDGDIINIDVTVIKN
                     EYHGDTSKMFIVGTPSVKAKHVVQIAHECLYIGIDMVKPGVQLGDIGHAIQQHAEKNR
                     CSVVRDYCGHGIGRVFHEDPQVLHYGVPGTGMKLEPGMTFTIEPMVNIGKHHTRLLPD
                     HWTVVTKDHSLSAQWEHTLLVTDTGVEILTLRNEER"
     gene            847..3432
                     /gene="glnD"
                     /locus_tag="JBH85_11405"
     CDS             847..3432
                     /gene="glnD"
                     /locus_tag="JBH85_11405"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HAU0946810.1"
                     /translation="MKNDNRIIKNTIKQFKEKLCKDFSQKTNITSITRKLAVFIDTIL
                     IQLFIKNKLHFGDNFCLLALGSYGRRELQLHSDIDLLILHTEKVSNIQLQRAQKFIQD
                     CWDVGLEVSHQITTVSSCANLASQDLSVISTIMDMFLLCGHGALMEELIYQTHTLHMW
                     PSHQYFFAKLQEQQNRYAKYGETAYNLEPNIKNGPGGLRDLQILLSISKRHFKIKKLA
                     EGIGYGFITDKEYEELKYCQNFLWRVRFALHMLAGKPEERLSFDYQVKLAQFFGYQDQ
                     SHILAIEQFMKDYFKVIKRNRELNEMLLQWFNETIVYHQKQKIIRLDDEFQLSNRFIE
                     VRNNRVFKQNPQSILKLFYWLVKRPDIEGVRASTIRLIRESLFLMGKRFRQSKETANI
                     FINIFRTGNDPYDALQRMNRYGVLAHYLDCFATVTGQMQYDLFHAYTVDQHTLFVIRN
                     ISRFKKNEYAKQFPLCAKIITALEKPEILYLGALFHDIAKGRGGDHSELGAIEAQQFT
                     QRHYMEAEDSKLIVWLVRYHLLMSQTAQRKDIYDPKTIEQFCQLLPHARYLDYLYLLT
                     VADICGTNPTLWNAWKDSLLKELYHAAKTRLHKQQELLDEAALISIRKQYAMDILISD
                     GISFRVIQDLWGQFKGKYFLHESPEVIARHTKAILNSKQFPVVIIMPHHSQGGTEVFI
                     YMPHKDERFTITTSVLSNHHVTIQEAAIITCDNQFDLDTYIILDENNQAFLNEQRARD
                     IQKSLCDHLANTGRLPAVSRRRLSRALTHFNVKTQINFIDDNTNHQTQLFLVTNDRPG
                     LLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQTGYSLNHEEKTILKEKLILEI
                     SKSKY"
     gene            complement(3454..3879)
                     /gene="tadA"
                     /locus_tag="JBH85_11410"
     CDS             complement(3454..3879)
                     /gene="tadA"
                     /locus_tag="JBH85_11410"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HAU0946811.1"
                     /translation="MQLAYEQAVIARNEGEVPVGAVLVSKDNQLLGVGRNVIEKSHDP
                     SDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPCVMCAGLMVHARIKRLVFATRDFKTG
                     AAGSMFNVLHALNHSVLIDEGIMQAECSQLLSDFFRNLR"
     gene            complement(3894..5471)
                     /gene="guaA"
                     /locus_tag="JBH85_11415"
     CDS             complement(3894..5471)
                     /gene="guaA"
                     /locus_tag="JBH85_11415"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HAU0946812.1"
                     /translation="MNDLKKSPLLILDFGSQYTQLIARRVREMGVYCEIYPYHINHEQ
                     FKKLNPCGVILSGGPSTVTHDANPRAPQWLFDSGLPLLGICYGMQTMAVQLGGQVHSS
                     ALREFGYAELRLHGHSQLLNNIEDRILADGSALLDVWMSHGDKVTELPPGFKIICETR
                     NAPIAGMADESRQMYGLQFHPEVTHTLQGLRILQRFVVDICKASTDWTPEHIIDEAIN
                     KIREQVGTEKVLLGLSGGVDSSVVAALLHRAIGEQLVCVFVDTGLLRLNEAEQVLSMF
                     GRHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEVFDEEAQKLTEIKWLAQG
                     TIYPDVIESAATSTNDAAVVIKSHHNVGGLPDTLNLKLLEPIRELFKDEVRQVGLELG
                     LPHDMVYRHPFPGPGLGVRILAEVKKEYADILRKADAIFIEELHNAQLYHKISQAFAV
                     FLPVKSVGVMGDGRRYDYVICLRAVETVDFMTAHWSQLPWDFLGKVSNRIINEVEGVS
                     RVTYDISGKPPATIEWE"
     gene            complement(5474..6946)
                     /gene="guaB"
                     /locus_tag="JBH85_11420"
     CDS             complement(5474..6946)
                     /gene="guaB"
                     /locus_tag="JBH85_11420"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HAU0946813.1"
                     /translation="MPLSIVQQSLTFDDVLLVPAHSTILPKDVSLKTKLTRAIHLNMP
                     LISAAMDTVTEARLAIALAQEGGLGIIHKNMSIADQAEEVRRVKKFESGMVKDPISVT
                     PDLTVKELLAVMTKYNFSGVPVVDGKHLVGIVTSRDIRFETNMNLTVAQVMTPKGRLV
                     TVKEGASREEVRSLLHKHRIEKLLVVNENFELRGLITVKDIQKAKDNPYACKDSFEQL
                     RVGAAVGVGEGTDERVAALVESGVDVIVVDTAHGHSQGVLNRVKWIKKNYPDVQVIGG
                     NIATAAAARDLYEAGADAVKVGIGPGSICTTRIVTGVGIPQISAIANVAQELKGIIPV
                     IADGGIRFSGDVCKALAAGADTVMLGSMFAGTEESPGEIELYQGRTYKNYRGMGSIGA
                     MSLAQGSSDRYFQDASLGTEKLVPEGIEGRVPYKGPVQTIIHQLLGGLRSCMGYTGCA
                     TIEELHSKTEFVQVTNAGMRESHVHDVSITKQAPNYQVDN"
BASE COUNT         2161 a         1491 c         1241 g         2057 t
ORIGIN      
        1 gtgattttca ttgaaaatct attattttgc tgattgaaga gtattgttgc ccctcttacc
       61 catgtgctaa catttatgat tttggataaa ccataatggg cgttacaatt aaaactcctg
      121 atgaaattga aaaaatgcgt gtcgctggca gactggcagc cgaagtactt gagatgattg
      181 gtccttatgt tcaagttggc attacaactg atgaattaaa cactatttgt cacgattata
      241 ttgttaatgt acaaaaggct attcccgccc ctttaaatta taacggtttc cccaaatcaa
      301 tttgcacctc aattaatcat gtggtatgtc atggaatacc agggaaaaaa actttaaaag
      361 atggagacat catcaatatt gatgtcactg ttataaaaaa tgaataccac ggtgatacca
      421 gtaaaatgtt tattgtaggc accccttctg tcaaggccaa gcatgtagtg cagatagcac
      481 atgagtgctt gtatattgga attgatatgg ttaaacccgg tgtccagcta ggcgatatag
      541 ggcatgccat tcagcaacat gcagaaaaaa atcgttgctc tgtggtgcgc gattactgcg
      601 gacatggaat tggccgtgta tttcatgagg atccacaagt gcttcactat ggagttcccg
      661 gaacagggat gaaattagaa ccagggatga cttttactat agagccgatg gttaatatag
      721 ggaaacatca tactcggcta ttaccagatc attggactgt cgttaccaaa gatcatagtc
      781 tttcagctca atgggagcac acacttttgg taactgatac aggtgttgaa attctgactt
      841 tacgtaatga agaacgataa tcgcatcata aaaaatacga ttaaacagtt caaggagaag
      901 ctgtgcaagg actttagcca aaaaactaat attacctcca tcacacgcaa gcttgctgta
      961 tttattgata ctattttaat tcaattattt attaaaaata agctacactt tggagataat
     1021 ttttgtctcc tggctcttgg aagctacggg cgtagagagc ttcaactcca ttcagatatt
     1081 gacttgttaa tattgcacac tgaaaaagta agcaatatcc aattacaacg cgcacaaaaa
     1141 tttatccagg attgttggga tgtggggctg gaggtaagcc atcaaattac cactgtttct
     1201 tcatgtgcca atttggccag tcaggatttg agcgtaattt ctaccattat ggatatgttc
     1261 ttactgtgtg ggcatggtgc cttaatggag gaattaatat accaaacaca taccttgcac
     1321 atgtggccta gccatcaata cttctttgcc aaacttcagg aacagcaaaa tcgttatgca
     1381 aagtatggag aaaccgccta caaccttgaa cctaatatta aaaatggtcc aggtggatta
     1441 agagacctgc aaattttgct aagcatcagc aaacgccatt ttaaaattaa aaaattagcc
     1501 gagggaatcg gttacggctt tattactgat aaagagtatg aagaattaaa atactgccag
     1561 aactttcttt ggcgcgttcg atttgctttg catatgttag caggaaagcc tgaggagcgc
     1621 ttgtcatttg attatcaggt taaattagct caattttttg gatatcaaga tcagtctcat
     1681 atcttggcca tagagcaatt tatgaaagac tactttaaag tcatcaaacg caatagagag
     1741 ctgaatgaaa tgctcttgca atggttcaat gaaaccatag tctatcatca aaagcaaaaa
     1801 attattcgtc tggatgatga atttcaactg tcaaaccgat tcattgaagt acgcaataac
     1861 cgtgtattta aacaaaatcc gcaatctata ttaaaactat tctattggct tgttaaacgc
     1921 cctgacatag aaggagtaag ggcaagcaca atcagactaa taagagaatc attattttta
     1981 atgggcaaac gctttagaca atcaaaagaa accgctaata tatttatcaa catattcaga
     2041 actggtaatg atccatacga tgcattacaa agaatgaata gatatggtgt tctagcgcac
     2101 tatcttgatt gttttgctac agtcactgga caaatgcagt atgatttatt ccatgcctat
     2161 actgttgatc agcatacact gtttgtgatc cgtaatatat ctcgctttaa aaagaacgaa
     2221 tatgctaaac aatttccttt atgcgccaaa atcattactg ctttagagaa acctgaaatt
     2281 ttgtatctcg gcgctttatt ccatgacatt gccaaaggtc ggggaggaga tcattctgaa
     2341 ttaggagcaa ttgaggcaca acaatttaca caacgccact atatggaggc agaagatagc
     2401 aaattgattg tttggcttgt tcgctaccat ttactcatgt cacaaactgc tcagcgtaaa
     2461 gatatttatg atcctaaaac aattgagcaa ttctgccaac ttctgcctca tgcaaggtat
     2521 ttggattatc tttatttact cacagtagca gatatttgcg gtacaaatcc tactctttgg
     2581 aatgcctgga aagattcatt acttaaagaa ttatatcatg cagcaaaaac aagacttcat
     2641 aaacaacaag agttgcttga tgaagcagct ctgatatcca ttcgtaaaca atacgctatg
     2701 gatatattaa tttcagatgg gatatccttc agagtcatac aggatttatg gggtcaattt
     2761 aagggaaaat attttcttca tgaatctcct gaggtaatag ccagacacac caaggccata
     2821 ctgaacagca aacaatttcc agtggtaata attatgccgc atcacagtca gggtggaact
     2881 gaagtattta tctacatgcc acataaagat gagagattta ctatcaccac ttcagtattg
     2941 agcaatcatc acgttactat acaggaagca gcaattatta cttgtgataa tcaatttgat
     3001 ctggatactt atattatttt agatgaaaac aatcaggctt ttttgaatga acaacgtgcc
     3061 agagacatcc aaaaaagtct atgtgatcat ctggccaata caggacgcct cccagctgtt
     3121 tctcgcagaa gattatccag agcattgact cattttaatg tcaaaacaca aattaacttt
     3181 attgatgaca atacgaatca tcaaacccaa ctatttctcg ttaccaatga cagacctgga
     3241 cttttggcga ctataagtcg cgtgtttctt acactaaaca ttcatttaca taatgcaaaa
     3301 attgctacag ctggtgagcg ggtagaagat atgttttata tctccaacca gacaggttat
     3361 tccctgaatc atgaggaaaa aacaatttta aaagaaaaat taattttgga aatttctaaa
     3421 agcaagtatt aagaaatatg ccaagataaa ttactagcga aggtttctga aaaaatctga
     3481 cagcaattga gaacactcag cctgcataat gccttcgtct attaataccg aatggtttag
     3541 agcatgtaaa acattaaaca ttgagccagc tgcccctgtt ttaaaatctc gggtagcaaa
     3601 taccagccgt ttgatgcgtg cgtgaaccat aagtcccgca cacatcacac agggctcaag
     3661 agtaacataa agcgttgtat ccaataatct atgattattt aactttctcg aggcttgtcg
     3721 tattgccctg atttcagcat gatcagaagg atcatgactt ttttcaatga catttctgcc
     3781 aacgcctaat aattgattgt ctttgctaac caacacagcc ccaacaggaa cctctccttc
     3841 attacgagct ataaccgctt gctcgtaagc cagttgcatc caaaatttat caatcattcc
     3901 cattcaatgg tagcaggtgg cttgccagaa atatcgtaag tgacacgtga tactccctct
     3961 acttcattaa taattcgatt ggatactttt cctaaaaaat cccagggcaa ttgagaccaa
     4021 tgtgctgtca taaaatcaac tgtctcaaca gctcttaaac aaattacgta atcgtatcgg
     4081 cgtccatccc ccatcacacc tacgctcttt actggtaaaa aaacagcaaa tgcctggctg
     4141 attttatgat aaagctgcgc gttatgcagt tcttcaataa aaatagcatc ggctttacgt
     4201 aatatatccg catattcttt ttttacttcc gctaaaattc ttacacccaa tccaggtcca
     4261 ggaaagggat gccgatagac catatcatgt gggagtccca attccagacc tacttgacgt
     4321 acttcatctt taaagagctc acgaataggt tccagcagtt taagatttaa tgtatctggt
     4381 aagccaccga cattatgatg agactttatg accacagccg catcattagt acttgttgct
     4441 gcagactcga tgacatcggg atagattgtg ccctgagcca gccactttat ctcagtcagt
     4501 ttctgtgctt cctcatcaaa gacttcaata aatgtacgcc caataatttt tctcttttcc
     4561 tctgggcaag ttactccctt caaagcagtt aaaaatttat cttcggcatt gactgcaata
     4621 atgcgtattc ccatatgccg accgaacatg ctcagcactt gctccgcctc attaagtctg
     4681 agtaaacccg tatcaacgaa aacacaaacc agttgctctc caatggctct atgcagcaat
     4741 gcggctacaa cagaagagtc aacgcctccg gataggccca gtaaaacttt ttcagttcct
     4801 acctgttctc tgattttatt aatggcttca tcaataatat gctctggagt ccagtctgtt
     4861 gatgctttac aaatatctac gacaaaacgt tgtaaaattc ttaaaccttg caaggtatga
     4921 gtaacttctg gatgaaattg caaaccatac atttgacgac tctcatcagc catacctgca
     4981 attggcgcat tgcgtgtttc acatataatt ttaaatcctg gcggtaactc ggtaacttta
     5041 tctccgtggc tcatccatac atccaatagt gcgctgccat ccgccaggat gcgatcttcg
     5101 atattattta ataattgact atggccatgc aagcgcaact cggcataccc aaactctctt
     5161 aacgccgatg aatgcacttg gccaccgagt tgtacagcca tggtttgcat cccgtagcaa
     5221 atacccagca agggcaaacc actatcaaat agccattgag gagccctggg attggcatca
     5281 tgcgttactg tcgaaggacc ccctgataaa atcacaccgc agggatttaa tttcttaaat
     5341 tgttcatgat taatatgata aggataaatt tcacaataaa cccccatttc tcgaacgcgt
     5401 cttgcaatta attgggtgta ttgagaacca aaatctaata ttaataatgg gctttttttc
     5461 aaatcattca ttattaatta tccacctgat aattgggggc ttgcttagta atactcacat
     5521 catgcacatg tgactcacgc ataccagcat tagtcacttg cacaaattca gttttagaat
     5581 gcaattcctc aatagtagca caaccggtat agcccataca ggagcgtaaa ccacctaata
     5641 attgatgaat aattgtttga accggtcctt tataaggtac tcttccttca atgccttcgg
     5701 gaaccagttt ttctgtacca agagaagcat cctgaaaata gcggtcactt gacccctgag
     5761 ctaatgacat ggctccaatg gatcccatac ctctgtaatt tttataagta cgcccctgat
     5821 ataattcaat ttcaccagga gattcttccg tacctgcaaa catactgcca agcattacag
     5881 tatcagcacc ggcagccaac gctttacaaa cgtcaccaga aaaacgtatt cctccatcgg
     5941 ctatcacagg aattatccct ttaagttctt gtgccacatt tgctatagcg ctaatttgcg
     6001 ggataccaac accggtcact atgcgagtgg tacaaattga tcctggccca attccaactt
     6061 ttactgcatc agcacccgcc tcatataaat ctcttgcggc ggcagcggtt gcaatattac
     6121 cacctatgac ttgtacatca ggataattct ttttaatcca tttcacgcga tttaatacgc
     6181 cctgagaatg accatgcgct gtatccacta ctatgacatc aactccggat tcaaccagag
     6241 ctgcaactcg ctcatcagtc ccttcaccaa caccaacagc agccccaact cttagctgct
     6301 caaaactgtc tttacaagca taggggttgt cttttgcttt ttgtatgtct tttactgtaa
     6361 tgagtccacg taactcaaaa ttctcattca ctaccaataa tttttctatt cggtgcttat
     6421 ggagcaaact tctgacttct tctctactcg ctccttcttt tacagtaact aaacgccctt
     6481 tgggagtcat tacttgcgcc acagtcaaat tcatattggt ttcaaaacga atatctcgac
     6541 tggttactat tcctaccaaa tgcttaccat caaccacagg cacccctgaa aaattatatt
     6601 ttgtcatgac tgcaagcaat tctttaactg tcaagtcggg agttactgaa ataggatctt
     6661 tcaccatacc gctttcaaat ttttttactc ttctgacttc ctctgcttga tcagcgatac
     6721 tcatattctt atgaataatc cccaaaccac cttcctgtgc taaagcgata gctaacctcg
     6781 cttcggtcac tgtatccatt gccgccgaaa ttaaaggcat attaaggtgg attgcacggg
     6841 ttaatttggt tttcaatgaa acgtctttgg gtaaaatagt tgagtgggca gggacaagca
     6901 aaacatcgtc aaaggttaat gactgttgca caatggatag aggcattttt
//
LOCUS       DACVWI010000150         6917 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.150, whole genome shotgun sequence.
ACCESSION   DACVWI010000150 DACVWI010000000
VERSION     DACVWI010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6917
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.150"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(19..894)
                     /locus_tag="JBH85_11425"
     CDS             complement(19..894)
                     /locus_tag="JBH85_11425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HAU0946814.1"
                     /translation="MDSLDLDFYAITRAFLFFSLIGLMVVLEYFFSFHRLGKAGVRRR
                     RVSNWYLGIVNIIVALPLSTLTTAAYCEYYQIGLFNLLKVPFGLVFILWFIIYDLYVY
                     LFHRLSHATFLWHFHKIHHSDKSLNVTTSFRFHPVEYILFNALKIVLIILLGPYFFVI
                     LVSDFIQAILVFWGHSNIALNAKLEQALSRIIITPRYHVMHHTQDECRRNYAAGLTLW
                     DYLFHTQTEPLWNKDDINKLTLGVQTKTNWSEFKNLLLINKLIHFLGRLQFVYFKFPL
                     ITIGVAVIFGIVEFY"
     gene            1210..1446
                     /locus_tag="JBH85_11430"
     CDS             1210..1446
                     /locus_tag="JBH85_11430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946815.1"
                     /translation="MKRVHHHPATHSHPSNATVQVSQGQTTVVVNPNPPHFPGQLPMY
                     HPNSFFTTHHHSPYYASQNQHYHQQPAPNTHQHP"
     gene            1623..2483
                     /locus_tag="JBH85_11435"
     CDS             1623..2483
                     /locus_tag="JBH85_11435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946816.1"
                     /translation="MVSYLFSEVHFTHALKKVLGISVLVGVYSAIIYFWFEQDNLHSS
                     NWLSYSQSVFGIILGLLLVFRSNRAYERWWEARTLWGQLVNASRNLAIKIRILLSPNA
                     DEAKKFSELINTFCEVLAIHLRQKSTRDDFKKFLKMVSLPNHVPSYVAQELYRELSEK
                     TKASKRLNLWLLDNEFSKFMDICGGCERIKNTFISLSFRVFVKHVFIIFILFLPCSLI
                     DTLGVWAIPATIIITYLIIAIEGIARNLEEPFGLTEDHLNLSAITESIRESVNEVLLG
                     QKSNEESNSI"
     gene            2538..2729
                     /locus_tag="JBH85_11440"
     CDS             2538..2729
                     /locus_tag="JBH85_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946817.1"
                     /translation="MECKCNQCGMGVKNLTCSKCDALLVSGTIVKNDGNKVQVAKCPN
                     GCGQIKSPVCCGHDMACSV"
     gene            complement(2798..3499)
                     /locus_tag="JBH85_11445"
     CDS             complement(2798..3499)
                     /locus_tag="JBH85_11445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HAU0946818.1"
                     /translation="MNRYSIFFLIFCTLSLESHASLYSGINLGINAVKINKNLVYPLE
                     DPVPTTSSFNSAYTDFHGQLIAGYDFSLAPKISAAVEANIDLFTGKAKHRITEWYFNE
                     DVYAEEQLKVGYSLFLLPTYHLNNMVQFFVGPGVSSSRFNIAFSNTAGNVGVSDSLNE
                     WLTGISIKAGSITKLTRNIDLLLTYQFTQYNSVTGVQMEPLSEDTLRGSYKPNVNTVL
                     IGFKVHPSDEITKDT"
     gene            complement(3512..5758)
                     /locus_tag="JBH85_11450"
     CDS             complement(3512..5758)
                     /locus_tag="JBH85_11450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946819.1"
                     /translation="MILLNLMGFTMIRTFLTAFLMLLCSLALAQEKVVTQFFKEVNSS
                     IAISEGKANIQASRYRVVDIDVNQLYAELENAPHRDGISTGIPLQLELPQPDGTVKRY
                     QVMENSTLAPELSTKFPEIKTYDAYGIDNPGELVKFDLTPQGFHAMILSPGRDTVFID
                     PLIKGNTQYYMIYYKKDFITSKKMKCGVKNQNQPLINAASKRDFTDFNPCVLKKYRLA
                     LAATAQYTQFHGGTVPQALAAEATTVNRVNGIYEIDMAITMQIIANNNLIIYTDPNNQ
                     PYTSGDPDKMIGENQANIDKEIGAANYDIGHVVDAAGSGLAQTPSVCINGEKAMGVTG
                     QSNPVGDPFDVGYVAHEIGHQFGANHVQNNNCQRNNPTAVEPGSGSTIMSYAGICDPN
                     VQDDSDPYFNGISLQEMGNFVSDATHTCPVKTSIPSAPVIQGTNGGVKIPAQTPFALT
                     ATATKSGGNEALTFAWEQQNNEASQQPPVSTSRVGPNFRSFSPQVSGTRYFPNLNALA
                     NNGPFTWEVLPSVSRTLKFRVTVRRNTPGGSCNAYTDTTLSVESKAGPFVVTNPTESG
                     ITWTGISPRTVTWDVANTNLPPINARFVNILLSIDGGQTFPFTLLSNVDNTGSEVICV
                     PNLNSSTARIMVQASNGTFFNVSKNNLTIIPVPPRPPELTRADRNPMDTSKAFILYAN
                     CIPTGNDVYTVNGLPPGATVRFDANNRRFIIENINTPKRVRNVTITATDENGVSRTSN
                     AITIPSIL"
     gene            5932..>6917
                     /locus_tag="JBH85_11455"
     CDS             5932..>6917
                     /locus_tag="JBH85_11455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAU0946820.1"
                     /translation="MDPITHGALGAACAQAALGKYDKRIPWQAGALAGMAPDLDVFIR
                     FSQEPLSLEQWHRYLTHSLMFIPIGGLIVALFLLCFSQYRQYWKITIGASLVGYATHC
                     LLDSLTSYGTVLFWPWSDSRISWDIISIIDPVFTLPLLLGTAWSVIYQNQKAVIASLF
                     FCILFLIFNTILHNRAVDGIHQYATTNNFKINHPRALPKLASSTYWRIIAKQQDCLII
                     AEAKTSLFYPTTIRLIRQALSFNESMIPFALSSGQKSDLATFHWFTDGFLIVANKNPL
                     ILADARYTIDDNPIFSLWGIEILPGQEHINKLSLPKINEYCESPDSERYKEDG"
BASE COUNT         2169 a         1308 c         1252 g         2188 t
ORIGIN      
        1 gcctacatgc taaggtaatt aataaaattc aactattcca aaaattactg caactcctat
       61 cgtaattagg gggaatttga aatagacaaa ttgtagcctg cccaaaaaat ggattaattt
      121 atttattaat aagagatttt tgaattcaga ccaatttgtt tttgtttgga ctccgagggt
      181 tagtttattg atatcatctt tattccaaag gggttctgtt tgggtatgaa ataaatagtc
      241 ccatagcgtt agtcctgcag cataatttct tctacattca tcttgcgtat gatgcatcac
      301 atgatatctc ggagtaataa ttattcgaga tagtgcttgc tcaagtttag cattcaaagc
      361 aatgttgctg tgtccccaga atacaagtat cgcttgaata aaatcggaga ctaatatgac
      421 aaagaaataa ggacccaaaa ggataatcaa aactattttt aaagcattga ataaaatata
      481 ttcaacagga tgaaatctaa aactcgttgt tacgttaagc gatttgtcgg aatgatgtat
      541 tttatgaaaa tgccataaga aagttgcatg acttaggcga tgaaataagt acacgtacaa
      601 atcatatatt ataaaccata aaataaagac aagcccaaaa ggtaccttca gcaagttaaa
      661 taatcctatt tggtaatact cacaataggc cgctgtagtt aaggtgctta atggaagggc
      721 aactataatg ttaacgattc ccaaatacca attgctgact cttcgccttc taacccctgc
      781 tttacccaaa cgatgaaaac taaagaaata ttcaagaact accatcaaac caattagcga
      841 aaaaaataaa aaagctctgg taatggcata aaaatctaaa tctagagaat ccataacaag
      901 accttaataa atttagttaa acacaaagaa atacaaatca ccctcttggt gcttattcct
      961 tagcttatta agttatgtta attgtcttgg ctagaacagt gtgtttatat aaccactatg
     1021 cgcataatta tagcacaaaa agctaataat attgaggcaa caggaagtga aaatagtaaa
     1081 tttttaacac tatctgtact tgtttaacta tctacattac aatctcgcac tcaggttatt
     1141 tttgaatagc ctgaataacg tcagttttat gtatgtaatg cagttgtatt tttataagga
     1201 taataatcta tgaaacgagt acatcatcac cctgcaacac actctcaccc atcaaatgct
     1261 actgtacaag tcagccaggg acaaaccact gtcgttgtta atccgaaccc tcctcatttt
     1321 ccagggcaat tgcctatgta ccatcccaat agttttttta caactcatca tcattcaccc
     1381 tattacgcat cccagaatca acattatcac caacaaccag cacccaatac tcatcaacac
     1441 ccataaatgg tggtaactgt taataaacag actattgctc tttaagaatt tagagtgaac
     1501 aataagtaat aactggcatt ctctggttat tacttatttt gctcccactt ttttgacaaa
     1561 gcactttata gaaagatcag tttctattat tctggaaaaa ctaaacaatc aaatggactg
     1621 ccatggttag ctatttattt tcagaagtac atttcaccca tgccctaaag aaagtacttg
     1681 gaattagcgt tttggttggt gtttacagcg ccattattta tttttggttt gagcaagata
     1741 acttgcattc cagtaactgg ctatcctatt cgcaaagcgt atttggcatc attttaggtt
     1801 tgcttttggt ttttagaagc aatcgggctt atgaacgttg gtgggaagcg agaaccctgt
     1861 ggggtcaatt agtcaatgcc agtcgtaatt tagcaataaa aatcaggata ttgttatcac
     1921 ccaatgccga tgaagctaaa aaattctctg aactcatcaa tacgttttgt gaagtattgg
     1981 ccatccattt gaggcaaaaa agtactcggg atgattttaa aaaattttta aaaatggtga
     2041 gtcttcccaa tcatgtgccg tcttatgttg cacaagaact gtatcgtgag ctttctgaga
     2101 agaccaaagc atcgaaaaga ttgaatctat ggttattgga taacgaattt agcaaattta
     2161 tggatatttg cggcggttgc gagcgtatta aaaatacatt tatctcgctt tcatttcggg
     2221 tttttgtaaa gcatgtattc attattttta tccttttttt accttgcagc ctaatcgata
     2281 cgcttggagt ttgggcaata cctgctacca ttattattac ctatttaatc atcgccatag
     2341 agggaattgc tcgaaattta gaagaaccat ttggtttaac agaagatcac ttaaacctta
     2401 gtgcaataac agaaagtatt agagaaagcg tcaatgaagt cttgctagga cagaaatcta
     2461 atgaagaatc caattcaatt tagtatggat tataattaat aaaagttttt ctacttaaat
     2521 aacagggagt cattataatg gaatgtaaat gcaatcaatg tggtatgggc gtaaaaaatt
     2581 taacctgcag taaatgtgac gcattgttgg ttagtggcac catagtcaaa aatgatggga
     2641 ataaagttca agtagcaaaa tgccccaacg gatgcggtca aatcaaatca cctgtttgct
     2701 gcggccacga catggcgtgc tcagtttgat tatttaaaat cagttaagga taggaaacct
     2761 caaataactg caattgaggt cttatccata actgagatta agtgtctttt gtgatttcat
     2821 ctgaagggtg tactttaaaa cctattagca ctgtgtttac gtttggctta tagctccctc
     2881 tcaacgtatc ttcggataaa ggttccattt gaaccccggt aacactgtta tattgtgtga
     2941 attgataggt taaaagtaag tctatattgc gagttagctt tgttattgaa cccgccttaa
     3001 tacttatccc ggtcagccat tcattcaaac tatcactgac ccctacgttt ccagcagtat
     3061 tactaaaagc aatattaaat cgactcgatg acacgcctgg acctacaaaa aattgaacca
     3121 tgttatttaa atgataggtg ggtaacaaaa ataacgaata acctactttt aactgctctt
     3181 ctgcatacac atcctcatta aaataccatt cggtaattct gtgttttgcc ttacctgtaa
     3241 acaagtctat atttgcctca actgcagcag atatttttgg ggcaagagaa aaatcataac
     3301 ctgcaatcaa ttgtccatga aaatcagtat aagcactatt gaaactggaa gttgttggca
     3361 caggatcttc cagcgggtag accagatttt tattgatttt aacagcattg attcccaaat
     3421 taattcctga atacaaactg gcatgagatt ccagtgataa agtacaaaaa attaaaaaaa
     3481 atatggaata tctattcata ttgagccctt tttataaaat actggggata gtaattgcat
     3541 ttgaagttct gctaacaccg ttttcatccg ttgcggtaat agtcacatta cgcactcttt
     3601 tcggtgtatt aatattctca atgataaatc gtcgattatt tgcatcaaat cttactgttg
     3661 caccaggagg caatccattc accgtataca catcattgcc agttggaatg caattcgcat
     3721 agagaataaa agccttagaa gtatccatag gatttcgatc agcgcgcgtt aactctggtg
     3781 gtcgaggtgg aactggaata attgtcaaat tgtttttgga aacattaaaa aaagtcccat
     3841 ttgatgcctg caccataatt cttgctgttg acgaattcag attaggaaca cagattacct
     3901 cacttcctgt attgtcgaca tttgataaga gggtaaaagg aaaagtttgc cctccatcta
     3961 ttgataatag aatgtttaca aatcgggcat ttattggagg aaggttagta ttggctacgt
     4021 cccaagtaac tgtccttggt gagataccag tccaggtaat acctgactcg gtgggatttg
     4081 tcactacaaa aggtccagcc ttactttcta cagataaggt agtatctgta taagcattgc
     4141 aagaacctcc gggagtattc ctgcgtacgg ttaccctgaa cttcaaggtg cgggagactg
     4201 aaggtaaaac ttcccaggta aaggggccat tattagccaa agcatttaaa ttgggaaaat
     4261 aacgtgtccc cgatacttga ggagagaaac ttctaaaatt tggtccaact cttgaggtgc
     4321 tgacaggagg ctgctgtgat gcttcattat tctgttgctc ccatgcaaaa gttaatgcct
     4381 cattacctcc acttttagtt gctgtagcag ttagagcaaa aggcgtttgt gctggtattt
     4441 taaccccacc attcgttcct tgaattaccg gagcagaggg tattgatgtc tttacaggac
     4501 aagtatgtgt tgcatcagaa acaaaattcc ccatttcttg caaactaata ccattaaaat
     4561 agggatcaga atcatcttgg acattagggt cgcaaattcc cgcatagctc ataatcgtac
     4621 tgccgcttcc aggctctaca gcagtagggt tatttctttg acaattatta ttttgtacat
     4681 gattcgcacc aaattgatgt cctatttcat gggcaacata accgacatca aatgggtctc
     4741 caacaggatt actttgccca gttacaccca ttgctttttc accgtttata cacacgcttg
     4801 gagtttgagc caatccacta ccagcggcgt caaccacatg acctatatcg taattagctg
     4861 ctccaatctc tttatcgata tttgcctgat tttcaccaat cattttatca ggatcgccgc
     4921 tggtataggg ctggttattc gggtctgtgt aaataatcaa attgttatta gcaataattt
     4981 gcatggtgat tgccatatcg atttcataga taccgttgac cctgttgaca gtagttgcct
     5041 ccgcagcaag tgcttgaggt actgtacccc catgaaattg ggtatattgt gccgttgccg
     5101 ccaatgcaag acgatatttt tttaatacac agggattaaa atcagtgaaa tctctttttg
     5161 aagccgcatt tataagaggt tgattttgat ttttcacacc gcacttcatt tttttggaag
     5221 taatgaaatc ttttttgtaa taaatcatgt agtactgcgt attacccttt attaaaggat
     5281 caataaagac tgtatctcta cctggactta agatcatggc atgaaaacct tgaggtgtca
     5341 gatcaaactt tactaattcc cctggattat caatcccata ggcatcatat gttttaattt
     5401 ctggaaattt tgtacttaat tcgggagcta aagtgctgtt ttccatcact tgataacgtt
     5461 ttacagttcc atccggctga ggaagttcaa gttgaagggg tatgcctgtg cttataccat
     5521 cgcgatgagg cgcattttcc aattctgcgt aaagctggtt aacatcgata tcaacaacac
     5581 gatatcggct tgcctggata ttcgcttttc cttctgaaat tgctatggaa gaattaactt
     5641 ccttaaaaaa ttgagtgaca accttctctt gtgctaaagc aagtgaacaa agcagcatga
     5701 ggaatgctgt aagaaacgtc cttatcattg taaaacccat caaattgagt aaaatcaatt
     5761 attattagaa cagtaaatcc aattaaaatt gaaaaaaatt acttttattt ttaaaaagta
     5821 tctataaaaa tttttttgca gcatataata cttatttttt caatgaaatt aaagccttac
     5881 ctttctcaga agaagcgcat tttcattgtt tatcagcctg ttaagtaaaa aatggatccg
     5941 ataactcacg gtgctttagg tgccgcttgt gcacaagcgg ctttaggaaa atatgacaag
     6001 agaatcccct ggcaagcagg tgccttagca gggatggctc cggatttgga tgtttttatt
     6061 cgttttagcc aagaaccatt gagccttgag caatggcacc gttatcttac gcattcctta
     6121 atgtttatcc caattggagg tctgatagtt gcactgtttc tattgtgttt ttcacaatat
     6181 agacaatatt ggaaaataac cattggagcc tctctcgttg gttatgcaac tcattgttta
     6241 ttggattcat tgacttctta cggcaccgtt ttgttttggc cctggagcga tagtcgtatt
     6301 agttgggata ttatttctat tattgatccc gtatttacct tacctctatt gctaggaaca
     6361 gcctggtcag tcatctatca aaatcaaaag gcagtaattg caagcctgtt tttctgcatt
     6421 ttatttctga tttttaatac gatattacat aatcgcgctg tagatggcat tcaccaatac
     6481 gctacgacta ataacttcaa aataaaccat cctcgtgccc tgcctaaatt ggccagctct
     6541 acttattggc gcatcatagc caagcaacaa gattgtttaa ttatcgcgga agcgaaaacg
     6601 tctctttttt atccaaccac aatcagactg attcggcagg ctttaagctt taatgaatca
     6661 atgattcctt ttgctttgtc atccggacaa aaaagtgatt tggctacatt tcactggttt
     6721 actgatggat ttctaattgt tgccaataaa aatcccttaa tcctcgcaga tgcgagatac
     6781 acgatagatg acaaccccat attctcccta tggggaatag agatattgcc agggcaagaa
     6841 catattaata aattaagctt gcctaaaatc aatgaatatt gtgaatcgcc agatagcgaa
     6901 cgctataagg aggacgg
//
LOCUS       DACVWI010000151         6796 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.151, whole genome shotgun sequence.
ACCESSION   DACVWI010000151 DACVWI010000000
VERSION     DACVWI010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6796
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.151"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            87..1190
                     /locus_tag="JBH85_11460"
     CDS             87..1190
                     /locus_tag="JBH85_11460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HAU0946821.1"
                     /translation="MHQELLKYLEMYHPQIAPFMHLQINEWDKNRPLEGVKILHHVPL
                     VPNTLLKIAALVAANAEVTVTNPASFCQAHPDAITCLHNSGIAYVENLDLLRDETFDV
                     YMDCGGQLHQRLGRPLTGAIELTGSGDQYYRSLKTLDFPVISIDHTMTKQLETVFGCA
                     ESSHQAIQKLTGVDPTNKNWLIFGFGKIGRGLAYFCLEHQVPVTVVDSSVHQCDLAFN
                     LGIEAIRPEEHDKLEKAVAKADIILTATGGKNIMSEYPRAWFDGKILGNLGLHDEFGP
                     NFTSQDVLYDKKPINFCLYDPTPMIFIDPEFYLHNLGCLLLLQGNFPRGMHDIPEDID
                     SSIIKDWCQYHRRSEKSIRCWFLTSQDFSLKTN"
     gene            complement(1312..2322)
                     /locus_tag="JBH85_11465"
     CDS             complement(1312..2322)
                     /locus_tag="JBH85_11465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946822.1"
                     /translation="MSTDNLLQPKLIEATLGDYPVIQNMARFYVYDMSRYCGFISEEW
                     TCPPDGLYESYDFKIYFTDPERKAFLIQIDNELAGFALLNKFGIQAVDWSMGEFFILA
                     KFQGKGIGQSVAHQLWRTHPGEWEISVIPENIPALSFWRQAVMTYTLGRYKEQIKTVN
                     YDIHQTQRIILSFNTQKQNKSCHSIPKKPITIDFVDNIPKSLEKKMTEDLIAYERTHG
                     IDVNYKRFSIVLSEEGVTCGVINAFTAFAEIYIDDIWVDKAYRGKGYGKKLLQTLENH
                     FKGQGFNNINLCTSAFQAPEFYRKCGYTAEFTRINQANPKLSKTFFVKFFDDENQTQG
                     LF"
     gene            complement(2570..3211)
                     /locus_tag="JBH85_11470"
     CDS             complement(2570..3211)
                     /locus_tag="JBH85_11470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946823.1"
                     /translation="MYFLKRRYRMVWDATTTNAISNAAHALFLLLYLIGACIHYLKKD
                     HTFSLLIVFFFLNLLVLKVLGVYVHYYPSHLHLPPAWIAISLLVIMLNYLLVQSMQMP
                     DLCRVIVVFLSIVFTYLFLTHDGNYTYIALPVILVCLIAAYYSQAKVRIGFVMVVISN
                     LIWIVTRHIANYLTGHEIPIEYRYDNDIYHILLILSTYVIYKGIAEGQWKHPR"
     gene            complement(3343..3717)
                     /locus_tag="JBH85_11475"
     CDS             complement(3343..3717)
                     /locus_tag="JBH85_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug:proton antiporter"
                     /protein_id="HAU0946824.1"
                     /translation="MLSDPNLVLFYVKNPAKSEEFYKNLLDTQPIESSPTFAMFVMKT
                     GLRLGLWAQEEIEPKAHQTGGGMELSFQVNSNEMVDEIHRQWSDKEISIIQPPTQMDF
                     GYTFVGVDPDEHRLRIFCLKRT"
     gene            3907..4680
                     /locus_tag="JBH85_11480"
     CDS             3907..4680
                     /locus_tag="JBH85_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946825.1"
                     /translation="MNSRIETFHQMEWHFFSLISMELLSLEGLKACNSGMPIPALNPV
                     FYSGKSTLLVAEIYQCKRFYESHSVPWALMVPDYLSDTKTDNVLAQSGFLSIDQGVAM
                     YLSIQDLGMPGFKSDLLIKRMDNEMETWILPTIPAFESTAEIAKIYRVRHQEAIEKSS
                     DIYHFSGFIQEQIVCSLTLTVMGDCARIDDVATFPKYQKNGYATQLILSELQILKDTN
                     ISWCFLEASADGLNIYKKIGFRELFKNLYYEEQYHYEQN"
     gene            4649..5353
                     /locus_tag="JBH85_11485"
     CDS             4649..5353
                     /locus_tag="JBH85_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HAU0946826.1"
                     /translation="MKSNTTMSKTERLFHLLQILRRYRYPLSGQFLANELGVSTRTIY
                     RDIAALQAQGADIEGEPGLGYVLKPGFMLPPLMFNEEEIEALVLGSRWVAKKTDTHLQ
                     QAAHNALAKIASVLPADLRQQLELSSLLIGPGEVISGEDESLALVRKAIRKELKLFIQ
                     YHDLKGNVSTRTIWPIGLGYFDQVRVLIAWCELKKDFRHFRADRIVDVENLGVCYAKR
                     RSVLLHDWRKQNNIPG"
     gene            complement(5513..6772)
                     /gene="lem19"
                     /locus_tag="JBH85_11490"
     CDS             complement(5513..6772)
                     /gene="lem19"
                     /locus_tag="JBH85_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem19"
                     /protein_id="HAU0946827.1"
                     /translation="MIDMISITTYWQQFKDCIDQLRSSVDNKEYSNQIATADLMIEIG
                     LTIEQLGITQIQQVGDRLHEKAKLFGYRVPFVTPEKKYEFCLPKITNAETLIFAIVYY
                     QHLKNYENVEYQGSINWFRSKVIHGVNEKKISTRAQAEAMLGEIRRYCQSQNLAFNES
                     EFIKKNDESAKEYTTRLFKNFYANKTAKSEPIGLKQLNESKESNLSDELAKLEKSLED
                     SRNKRNQLIVKIDALAKKLADYHLLSQNQHKLNNEWNNKWFFTKFFDWIMSWFSNDSF
                     IKNLKTSYEQVINAEHELKQEFHPFDTADAYRAELKKQLEETHIECDKNQKQINEYQL
                     KQLEHKLEQRLEQKLQEKLQQDTAVEQKEPSVTKVLSEIKHETNGSDFSSNLNHYYGF
                     FKEHLPNRETLGAIAVGVAAIALQNLM"
BASE COUNT         2014 a         1166 c         1334 g         2282 t
ORIGIN      
        1 taaaatatgc tttattaatt cgtgttattg ttaatgagtt ttattatagt attgtcattc
       61 tttctcatac tcatatggtc taaataatgc accaggagtt attaaagtac ttagaaatgt
      121 atcacccgca aattgcgcca tttatgcatc ttcagattaa tgaatgggac aaaaacaggc
      181 cactggaagg agtgaaaata ctgcatcatg tgcctttggt tcccaataca ctgctaaaaa
      241 tagcagctct tgtcgctgca aatgctgagg tgaccgtaac caatccagcc tctttttgtc
      301 aggcacatcc tgatgcgatt acttgtcttc ataattcagg aattgcttat gttgaaaatc
      361 ttgacctttt aagagatgaa acgttcgatg tttatatgga ttgtggcggg cagcttcatc
      421 agcgtctcgg aagacctttg acgggagcta tagagttaac aggctcaggg gatcagtatt
      481 atcgtagtct gaaaacactt gattttccgg ttataagcat tgatcacaca atgacgaaac
      541 aattggaaac agtatttggc tgtgctgaaa gttctcacca agcgattcaa aaactcactg
      601 gtgtcgatcc cacaaacaag aattggctaa tctttgggtt tggtaaaata gggcgagggc
      661 tcgcttattt ttgtctggaa catcaagtac cagttactgt agtggatagt tcagtccatc
      721 aatgtgattt agctttcaat cttggtatag aggctattag acccgaggag catgataagc
      781 tcgaaaaagc tgtggctaaa gcagatatta tattaactgc aacgggcggt aaaaatatca
      841 tgagcgaata tcccagagcc tggtttgatg gcaaaatttt ggggaattta ggactgcatg
      901 atgagtttgg tcccaatttc acctctcagg atgtattata cgataaaaaa cctattaatt
      961 tttgcctata tgatcctacg ccaatgattt ttatagatcc tgagttttat ttgcataatc
     1021 tgggatgttt attgctttta cagggaaatt ttcctcgagg aatgcatgat attcctgaag
     1081 atatagattc ctctattatt aaagactggt gccaatatca taggcgttct gaaaaaagta
     1141 ttcgatgttg gtttctgact tcccaggatt tttctcttaa aacaaattaa tataaacagt
     1201 tcgaataaga cggtttatag gcactttaat tagtctattt aattgaaaat tactttttca
     1261 ggacttctga atatcaataa gatgtgggga gttatttaga agttctattt ttcaaaatag
     1321 tccttgtgtt tgattttcat catcaaaaaa tttcacaaag aaggttttgg aaagcttggg
     1381 attggcttga ttgatgcgag taaattcagc cgtgtatccg cattttctgt aaaattctgg
     1441 tgcttgaaag gcgctggtac ataaattgat attattaaat ccttgccctt taaaatgatt
     1501 ctcaagagtt tgcagtaatt ttttgccata tcctttacca cgatatgctt tatctaccca
     1561 tatgtcatcg atgtatattt ctgcaaaagc agtaaaggca ttaataacgc cacaagtcac
     1621 cccttcttca gatagtacta tcgaaaaacg cttgtagttc acatcaatac catgagttct
     1681 ttcataggct atcagatctt ctgtcatctt tttttccaga gatttgggga tattatccac
     1741 gaaatctatt gtaataggtt tttttggaat ggaatgacaa gatttgttct gtttttgtgt
     1801 attaaaactt aaaataatgc gttgggtttg gtggatatca taattcactg tctttatctg
     1861 ttctttgtac cgtccaagag tataggtcat tactgcctgg cgccaaaacg ataaagccgg
     1921 tatgttttcc ggaatgaccg atatttccca ttcacctgga tgagtgcgcc atagttgatg
     1981 agctactgat tggccaatgc ctttcccttg gaatttagcc aggatgaaaa actctcccat
     2041 actccaatca acagcttgga ttccgaattt atttaataaa gcaaaaccgg ccagttcatt
     2101 gtcaatttga ataaggaagg cttttcgttc ggggtcggta aaataaattt tgaaatcata
     2161 actttcataa agtccatctg gtgggcatgt ccattcttcc gaaataaaac cgcaataacg
     2221 tgacatatca taaacataaa atcgcgccat attttgaata actggatagt caccaagtgt
     2281 tgcctcaatt aacttgggct gtaataaatt atcagtgctc atgaatattt attctcaaga
     2341 gattttctta attatttgga taaggtatca aagtgttctg tggttttata gagtgattgt
     2401 tgttaatcgc ataattaatc agctattttg gtaggctgtc tagaataact aaaagaattc
     2461 catgaatgta tgaattcatg ctcaggaaat ggttcatttc aaagtgatta aattattcac
     2521 tcatatcttg acattgcttt tgataagtat aggtttctca atgatatttt taacgaggat
     2581 gtttccattg cccttcggca atacccttat agatcacata agtagagaga attaaaagga
     2641 tatgatagat atcattatca tagcgatatt ctataggtat ttcatgacca gtgagatagt
     2701 ttgcaatatg tcttgtaact atccatatca ggtttgatat aacgaccatg acaaagccaa
     2761 tcctgacttt tgcttgcgaa taataagccg caatcaaaca tacaaggatg acaggaaggg
     2821 caatgtaggt ataatttcca tcgtgggtca ggaacagata agtgaagacg atggatagaa
     2881 atactacgat aactcggcac aaatcgggca tttgcattga ttggacaagc agataattaa
     2941 gcatgattac aagcaaacta atcgcaatcc aggctggtgg taaatgcaaa tgagaagggt
     3001 agtaatggac ataaactccc aataccttga gaacaaggag gtttaagaaa aaaaacacaa
     3061 tcaaaagcga aaaagtatga tcttttttta agtagtggat gcaggcacca attaagtaca
     3121 ataacaggaa aagcgcatgg gcggcattag agatggcgtt tgttgtcgtt gcgtcccata
     3181 ccattctgta tctccttttt aaaaaataca gctatcagcg gtcgatgtcc cgatgtttgt
     3241 tcatttgcta atagtaattg tagcttgtag cagcttggga tgtgtgatat cactcactta
     3301 aaagccatac tacaagctat gattggtcat tactccaatt gcttacgttc gttttagaca
     3361 aaaaatacga agacgatgct catcgggatc aacaccaaca aatgtgtatc caaaatccat
     3421 ttgtgtggga ggttgaataa tagaaatttc tttatcagac cattgcctgt gtatctcatc
     3481 gaccatttca ttactgttaa cctgaaaaga cagctccata ccccctcctg tttgatgagc
     3541 tttaggctca atctcttctt gcgcccataa tccaagacga agccctgttt tcatgacaaa
     3601 catagcgaat gtcggtgaag attcaatagg ttgagtgtct aacagatttt tataaaattc
     3661 ttcacttttt gccgggtttt tgacgtaaaa taaaaccaaa ttagggtcac ttaacatgtt
     3721 attttcctta ttttttatta atcatcgcca gtataaacaa ggctaatgac agattttgtc
     3781 agtagtgttt taagtgccta atattgacct tcttgataat aaaaaacaca tgaaacagga
     3841 ttttggtgtt attatgaaaa caaaatttag cctatcctgg ctcaaaaatt ttgatgagtt
     3901 tattttatga acagccgtat tgaaactttc catcaaatgg agtggcattt tttttcactg
     3961 attagtatgg agcttttatc attggaagga ttgaaagctt gtaacagtgg aatgccaatt
     4021 cctgctctaa atcccgtgtt ttattcaggt aaatcgactc tgcttgtggc agagatttat
     4081 caatgcaaac gcttttatga gtctcattca gtaccttggg cactgatggt tcccgactat
     4141 ttatctgata caaaaacaga taatgtactt gctcaatcag gatttttatc tattgatcaa
     4201 ggagtggcca tgtacttgtc aattcaggat cttggaatgc ccgggtttaa atctgacttg
     4261 ttaataaagc gcatggataa tgagatggaa acctggattt tacctactat ccctgcattt
     4321 gaatcaactg cagagattgc aaaaatttac agagtaagac atcaggaggc tattgagaag
     4381 tcttctgata tttatcattt ttccggtttt attcaagagc aaattgtctg ctcattaacg
     4441 ctgactgtta tgggagactg tgcaaggatt gatgatgtag ctacttttcc caaatatcag
     4501 aaaaatgggt atgcaacaca attgatttta tcagaacttc aaattctgaa agacactaat
     4561 atttcctggt gttttttaga agcatctgca gatggtttga atatttataa aaagattggt
     4621 tttcgtgaac tgttcaaaaa tctttattat gaagagcaat accactatga gcaaaactga
     4681 gagactcttt catctgttgc aaattttgcg gcgttatcgt tatcccctta gtggacaatt
     4741 tcttgccaat gagctgggtg tcagtacccg taccatctat cgggacattg cggctttaca
     4801 ggctcaaggt gctgatattg agggtgaacc aggattgggt tatgtgttaa aaccaggctt
     4861 tatgttaccg cctttgatgt ttaatgaaga ggaaattgag gctcttgttt taggctccag
     4921 atgggtagct aaaaaaacgg atactcactt gcaacaggct gctcataatg ccttggctaa
     4981 aatcgcttct gtacttcctg ccgatttgcg acagcaattg gagctatcca gtttattaat
     5041 agggcctggt gaagtgattt caggagaaga tgaatctctc gcattagtca gaaaggcaat
     5101 acgaaaagaa ctgaagttgt ttattcaata ccatgactta aaaggaaatg tttcaacgcg
     5161 tacgatttgg ccaattggac ttgggtattt tgatcaagta agagttttga ttgcctggtg
     5221 tgaattaaaa aaggattttc gtcattttag agctgataga attgtagatg ttgaaaactt
     5281 gggggtctgt tatgcaaagc gacgctcggt gttacttcat gattggcgaa agcaaaataa
     5341 tatcccaggc tgatgacaac acgatgttat tgacgtgtta acttgaacag gtaaaattta
     5401 atgccgggaa tcaagtttta ctttcttccc ggattaagat tgcttccaat gccaaagacg
     5461 tgctgaactc ccacttattc ctgagtgaga gaacctcgta tttcaaacgg ttttacatca
     5521 aattttgaag ggcaatggct gcgacaccaa cagcaattgc tcccagcgtt tctcgatttg
     5581 gcaagtgctc tttaaagaaa ccataataat gatttaaatt tgaagagaaa tcactgccat
     5641 tggtttcgtg tttgatttct gatagcactt ttgtaacgga aggttctttt tgttcaacag
     5701 cagtgtcctg ttgtagtttt tcttgcagct tttgttctaa cctttgttca agtttgtgtt
     5761 ctaactgttt caattgatat tcgttaattt gcttttgatt cttatcgcat tcaatgtgag
     5821 tttcttccag ttgttttttt aattcagctc gataggcatc cgcggtgtcg aaggggtgaa
     5881 attcttgctt cagctcatgt tcagcattaa tgacttgctc atagctggtt tttaaatttt
     5941 tgataaatga atcattagag aaccaggaca tgatccagtc gaaaaatttt gtaaaaaacc
     6001 atttgttatt ccattcattg tttaatttat gctggttttg cgaaaggaga tgatagtctg
     6061 ccagtttctt tgcaagagca tctattttga caatcaattg atttctttta tttcttgaat
     6121 cttcaaggga tttttcaagc ttggctagct catcggacag gttggattct tttgattcgt
     6181 taagttgttt tagcccgatt ggttcacttt ttgcagtttt attggcataa aaattcttga
     6241 acaatcttgt tgtatactct tttgctgact cgtcattttt ctttatgaat tcagattcat
     6301 taaaggcaag attttgactt tgacaatatc gtctaatttc tcctaacatc gcttcggctt
     6361 gagcacgggt cgaaattttc ttttcattaa caccatggat tacctttgat ctaaaccaat
     6421 tgatagaacc ttggtattcg acattttcat agttcttaag gtgctgatag taaacgattg
     6481 caaaaatcag ggtttcagcg ttagttattt tgggtaaaca aaattcatat tttttttcag
     6541 gggtaacaaa tgggactcga tatccgaaca atttggcttt ttcgtgcagt cgatctccta
     6601 cctgttggat ttgagtaatc cccagttgtt ctattgtcaa gccaatctcg atcataagat
     6661 ccgcggtggc tatttgattg gagtattctt tgttgtctac agatgaacga agttgatcaa
     6721 tgcaatcttt aaattgttgc caataagttg ttattgaaat catatcaatc attatttaag
     6781 aaaaaagagt cataaa
//
LOCUS       DACVWI010000152         6784 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.152, whole genome shotgun sequence.
ACCESSION   DACVWI010000152 DACVWI010000000
VERSION     DACVWI010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6784
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.152"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1033)
                     /locus_tag="JBH85_11495"
     CDS             complement(<1..1033)
                     /locus_tag="JBH85_11495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAU0946828.1"
                     /translation="MQNNFSVKIGIIVGFKLFLSSFILLVFFQSEICFAAPSQVKTNT
                     TLEEIKTAYKKKNFDQTIKLSQDYLRAFHQDADVSLYKGLAFSQLNQCDRAIPVFNSV
                     LDSYPQYLDARLGLINCLLKSNNYSQALETVEQGLTLNPHHSELLFLKAKTLFLLNRK
                     QEAKTVLNQNLKTNPENQQSIVLLNNMEKEEKSESAKQFVNEISSTQTSKRVLLAGRR
                     NLELVTDEIKRPKLIMGVFTDNMGVNIPRQYWNLSNFYGYWVNSLGAFGGSVNYATRY
                     NQNATQLELDAYPNIGKYFTLDLTYAYADKPELFPDELESGELHAYLPYEIDASFGGA
                     HRKIAHFTLN"
     gene            complement(1110..2330)
                     /locus_tag="JBH85_11500"
     CDS             complement(1110..2330)
                     /locus_tag="JBH85_11500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAU0946829.1"
                     /translation="MRILFINTGPWGTGSFTVIKGLSKQLIKSGHQVKIFFPDSNLES
                     VDKDEYYKNTHIYKIWEFPISKDSVAIPTFPLMITDPHPRNPNAITFKSLTEQQIAFY
                     EQKLTHELKQLIQEFQPDVIECHHIWLSSWVLYQMNVNYTVVAHHSDQLGLKYYPAIA
                     EKVCASAHGAKKIIAISESVKKEVMRLYHVEEKQIVVLSNGYDDSIFKKRPVIRDSFL
                     AELGIHIEPGIPIISFAGKISRTKGVDFILAANKLLQTKVNVHFIMMGSGSIEEFCAK
                     LDPERIDLNNMHFIGQQIPENVAKVHNISRLSVMPSRSEGFGISCLEAMGCGLPVVVT
                     RCGGPEQFAVGKILDKKDPVLLAQAILDLLGLSEVKYHNLSLEAIHTAHQYSWKRITK
                     QHLELYSNLLNHKK"
     gene            complement(2351..3325)
                     /locus_tag="JBH85_11505"
     CDS             complement(2351..3325)
                     /locus_tag="JBH85_11505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HAU0946830.1"
                     /translation="MAHILITGGCGFIGSHLAAFHLEQGDEVLVVDNMSSGSITNLRL
                     FQDNPLLRIENKDILFWEDLPKATKWADRIYHMAAIVGVFKVLSEPVNVIKTNIWGAQ
                     RLLETITESGSLARVLLASSSSVYGAIKRPDLNEEEDLVVKIKNYSLSTYMISKITQE
                     AIALAYYKSYQIPLTLVRMFNVIGPKQTGRYGMVVPRFVQQACNNEPITVFGDGTQTR
                     SFCDVRDAVNAMNMLLDTRESIGEIINVGNTQEISISQLAELVIKRTKSRSKIQYISY
                     EEAYGPGFRDTTQRKPDLSKLYSMISYKPMWTMENTIDDLASAYRGIQ"
     gene            complement(3326..4612)
                     /locus_tag="JBH85_11510"
     CDS             complement(3326..4612)
                     /locus_tag="JBH85_11510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HAU0946831.1"
                     /translation="MCLKRRIVMMGLGYVGLTLAVALGKITRVIAYDKNSSRISELKN
                     GQDRNLEVEDDALAVSDLLLTSDPKELENGDFYIIAVPTPLNKNRQVDFSMLFEATKL
                     VGKCLKKGDIVVYESSVYPGATEEQCIPLLEKSSKLICGESFSVGYSPERINPSDQEH
                     VLQNIVKIVSATDGDTLNIISEVYNSIINAGVFPVSSIRVAEAAKVIENAQRDINIGF
                     INDIAVMLHHLGIDTAEVIQAMKTKWNYIPFQPGLVGGHCIGINSYYLMHKAEEIGYY
                     SNLIMAGRQINESIAKFIAEQTIKQLIRQGSPVKRARIAILGLTYKENCSDLRDTRVI
                     DIIRELQSYDTELFIHDPIADAVAAKKHYGIELQSWENLNDLDAMIFTVSHQYYLTMD
                     RHEIKNKLNWHGLIMDVKEIFNYEEFKDTGILLWRL"
     gene            4789..5634
                     /locus_tag="JBH85_11515"
     CDS             4789..5634
                     /locus_tag="JBH85_11515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0946832.1"
                     /translation="MNAVVITGAASGIGLALSKVCLQKGKTVVMVDNNEGSLNRADKL
                     FSNDFPNQIISAHCDVTQEHEISELAQLVYQNLGQIDWIFNNAGIIGNLLPAWELQAS
                     DINQVMEVNLHGMLNMIRSFMPYLFKQNFRSHIINMASLYALCTGSQMAAYSMSKHAV
                     LALSESLYFDLNRLKKPVDVSVVFPSFTDTSLLATSGKLNHSPIHNQLNNLLAHSRPA
                     IEVAEHIVREVEQKRFYILPDKEVKGYCEDRTKAILLQENPHRNSVEQLMCSLLKRQS
                     SEANL"
     gene            5840..6784
                     /locus_tag="JBH85_11520"
                     /pseudo
     CDS             5840..6784
                     /locus_tag="JBH85_11520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947727.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
BASE COUNT         2158 a         1329 c         1158 g         2139 t
ORIGIN      
        1 aattaagagt aaaatgagca atttttctgt gtgcgcctcc aaaagaagca tctatttcat
       61 aaggcaaata agcatgtaac tcgccactct ccaattcatc aggaaacaac tcaggtttat
      121 cagcataagc ataagtcaaa tccaaagtga aatatttgcc aatattagga taagcatcta
      181 attctaattg tgtcgcattc tgattatacc gcgtagcata attcactgag ccaccaaagg
      241 ctcccaaaga attaacccaa taaccgtaaa agttagataa attccaatat tgcctaggta
      301 tattaacacc catgttatct gtaaaaacac ccattatcaa tttagggcgt ttgatttcat
      361 ctgtcactaa ctccaggttt cttctgcctg ctagcaggac tcttttggac gtttgggttg
      421 agcttatctc attgacaaac tgtttggcgc tttcactttt ttcttccttc tccatattgt
      481 ttaacaatac gattgattgc tgattttctg gattagtttt caaattttga tttaacacag
      541 tcttggcttc ttgcttccta ttcagtaaaa ataaggtctt agccttaaga aacaaaagtt
      601 cactgtgatg cggattaagg gtcagtcctt gctcaactgt ttcaagagct tgactataat
      661 tattgctttt taaaagacaa ttaattaagc ctaatctggc atccaaatat tgtggataac
      721 tatccaaaac agagttaaaa acagggatag ccctatcaca ttgatttaat tgactaaaag
      781 ctagtccttt atacagagaa acatcagcat cctgatggaa tgctcttaaa taatcctgac
      841 tcagtttaat cgtttgatcg aaatttttct ttttataagc ggttttaatc tcttccagag
      901 tcgtattggt tttaacttga ctgggagctg caaaacaaat ttcagattga aaaaaaacca
      961 ataagatgaa tgatgagagg aaaagtttaa aacccacaat aatccctatt ttgacagaaa
     1021 aattattctg cagttatcct gtaacgaaat taaactttag tttttcatct tactcaatca
     1081 taatactaat tttcaagctt tcataaaaat tattttttat gattcaacag attactgtat
     1141 agttcaagat gctgttttgt aattcgtttc caactgtatt ggtgagctgt atggatggct
     1201 tccaagctta aattatgata tttaacctca gaaagaccta gcaaatctaa tatggcttgg
     1261 gcaagtaaaa caggatcttt cttatcaaga attttaccta ccgcaaattg ctcagggcca
     1321 ccacagcgtg tcacaacaac cggtaatcca catcccatgg cttccaaaca ggatatccca
     1381 aatccttcac tacgtgaagg catgacactt aatctggaaa tattatgtac tttagctaca
     1441 ttttcaggga tttgctgacc gataaaatgc atattattca aatcgattcg ttcaggatct
     1501 aatttcgcac agaattcttc aatagaacct gaacccatca tgataaaatg gacattgact
     1561 ttggtttgta acaatttatt cgctgccagt ataaaatcca ctcccttggt gcgagatatc
     1621 tttcctgcga aactgattat tggaataccc ggttctatgt gaattcctaa ctcagcaaga
     1681 aaagaatctc taatcacagg cctcttttta aaaatgctat catcataccc attcgagagc
     1741 actacgattt gcttttcctc aacgtgataa aggcgcatta cctccttttt aactgattcg
     1801 gaaattgcaa taatcttttt ggccccatgt gcactggcgc ataccttttc tgcaatcgct
     1861 ggataatatt tcaaacccaa ttgatcgcta tgatgtgcaa caaccgtata attcacattc
     1921 atctgataca atacccagct acttaaccaa atatgatgac attcaataac atcaggctgg
     1981 aattcttgaa tcaattgttt tagctcatga gtcagttttt gctcatagaa tgcaatttgt
     2041 tgttctgtaa gactcttaaa agttatggca tttggattcc taggatgtgg atccgtaatc
     2101 attaatggaa aagtaggaat agcaactgaa tctttgctaa ttggaaactc ccatatttta
     2161 taaatgtgag tatttttata atattcatct ttatctacag attccaaatt ggaatcaggg
     2221 aaaaaaattt ttacttgatg tcctgattta attaattgtt tagataaccc tttaatgaca
     2281 gtaaagcttc ctgtacccca tggccctgta ttgataaata aaatgcgcat ccaatattaa
     2341 tcctttatta ttattgtatg cctcgatatg ccgaagcgag atcgtctatg gtattttcca
     2401 tagtccacat gggtttatag gaaatcatgc tataaagttt acttaaatcc ggctttcttt
     2461 gagtagtatc tctaaatcct ggcccatagg cttcctcata agaaatatat tgaatttttg
     2521 atcgtgattt tgtgcgcttt ataaccaact cggccaattg actaatggaa atctcttgag
     2581 tattaccaac attgataatt tcaccaatcg attctctggt atcaagcagc atattcatgg
     2641 cgttaactgc atctctgaca tcacaaaacg agcgtgtttg agttccatcc ccaaaaacgg
     2701 tgatcggctc attattgcaa gcttgttgta caaatcttgg aacaaccatt ccatatcttc
     2761 cagtttgctt aggtccaatg acattaaaca tcctgactaa agttaaggga atttgataag
     2821 atttataata agccagagcg attgcttctt gagtaatttt actgatcata taggttgata
     2881 gagaataatt ttttattttc actaccaaat cctcttcttc attaagatct gggcgtttta
     2941 ttgccccgta aactgaagaa gaggatgcca gtaaaactct tgccagcgag ccactttcag
     3001 tgattgtttc cagcaaacgt tgagcacccc atatgtttgt cttaatcaca ttaacaggtt
     3061 ctgaaagcac tttaaagacc ccaacaattg cagccatgtg gtagattcga tcagcccatt
     3121 tagtcgcttt aggcaagtcc tcccaaaata gaatgtcttt attttcaata cgcaaaagtg
     3181 gattatcctg aaacaaccgt aaattagtta tagatcctga gctcatatta tctacaacca
     3241 aaacttcatc tccctgttct aaatgaaagg cagcaagatg agaacctatg aaaccacatc
     3301 ctccggtaat taatatatgc gccattcata gcctccagag taaaattcca gtatccttga
     3361 actcttcata attaaaaatt tcttttacat ccatgataag gccgtgccaa tttaatttat
     3421 tttttatttc atgtctgtcc atagtcaaat agtattgatg tgacacagta aaaatcatgg
     3481 catccagatc attaagattt tcccaggatt gaagttcgat accgtaatgt ttctttgcgg
     3541 ctacagcgtc agcgatagga tcatgaataa atagctcggt atcatacgat tgtaattctc
     3601 taataatatc aattactcgg gtgtcgcgga gatcagaaca attttcctta taggttaatc
     3661 ctaaaattgc aattcgcgcc ctttttacag gacttccctg gcgaattaac tgttttatgg
     3721 tttgttctgc gataaatttt gcaatggatt cattaatctg ccttcccgcc ataataaggt
     3781 ttgagtaata tccaatctct tccgctttgt gcatcaagta atatgaatta ataccgatac
     3841 agtgaccacc cactaatcca ggttgaaaag ggatataatt ccatttggtt ttcattgcct
     3901 ggatcacttc cgctgtatca atgccaagat gatgcaacat aacagcaata tcatttataa
     3961 aacctatgtt gatgtccctt tgcgcatttt caatcacctt tgccgcctca gcgacgcgta
     4021 tggaggaaac tggaaaaact cctgcgttaa ttatgctgtt atacacttcc gagataatat
     4081 tcaaagtatc tccatcagtg gcagaaacaa ttttcactat gttttgaaga acatgctctt
     4141 gatctgaggg attaatacgt tccggagagt agcctacaga aaaactctcg ccgcaaatta
     4201 atttggagct tttttcaagt agcgggatac attgctcttc tgtagctcct ggataaacag
     4261 atgattcgta aacaacaata tccccctttt taagacattt tccaaccaat tttgttgcct
     4321 caaacaacat tgagaaatca acctgcctgt ttttattcaa tggagttgga acagctatga
     4381 tataaaaatc accattttcc agttccttcg ggtcggatgt taatagaaga tcgcttacag
     4441 ctaaagcatc atcttcgact tccaaattcc tatcctggcc atttttaagt tcggaaatcc
     4501 gtgatgaatt cttatcatat gctatcactc ttgtaatttt tcccaaggcg acagcaaggg
     4561 ttaaaccgac atatcccaga cccatcatta ctattcttcg ttttaagcac atgattgagc
     4621 tttatttagt atttatataa ttaaatttag acaatctttc ggcaatataa aaatcggcga
     4681 catgaaattt gacaaaagtt tttaaaattc atcgtgaatg gaagcaaata accttcccat
     4741 gatacaattc gccaagtatg tcctctatta ttttaaaagg caaaaaatat gaatgcagtt
     4801 gtcatcaccg gagcagcaag cggaatagga cttgctttat ccaaggtttg tcttcaaaaa
     4861 ggaaaaactg tcgttatggt ggataataat gagggcagtc tcaatagagc agacaaatta
     4921 ttctcaaatg attttcctaa tcaaatcatt tccgcccact gtgacgtaac ccaagagcat
     4981 gaaataagcg aattagcaca actggtctac caaaatttag gccaaattga ttggatattt
     5041 aataatgcag gaatcatcgg caatttactt ccagcctggg aattacaagc aagtgatatt
     5101 aatcaggtaa tggaagtgaa tttgcacggg atgcttaata tgattcgctc attcatgcct
     5161 tatttattca aacagaattt ccgttctcat attatcaaca tggccagcct atatgcctta
     5221 tgtacaggct cacaaatggc cgcctattcc atgtcaaaac atgccgtatt agccttatcc
     5281 gagtcattat attttgatct caatcgcctt aaaaaacctg tagatgtttc tgtagtattt
     5341 ccttctttta cagatacctc gttattagcg actagtggga aattaaacca ttctccaatc
     5401 cacaatcaat taaataactt gttagcacat tcccgccccg ccattgaagt tgcagaacat
     5461 atagtaagag aagtggaaca aaaaagattt tacatattgc ccgataaaga agttaaagga
     5521 tattgtgaag acagaaccaa agccatattg ttacaggaaa atcctcaccg taacagtgta
     5581 gaacaattga tgtgttcttt attaaagcgc caatcatcag aagccaatct gtaaattgtt
     5641 tgcgattttc aaaacagaat aagtgtaacc gtaaccgtac gcggggtatg caaatttttc
     5701 tgtttataag cctatttatt tgagttgtct ttcccgcgaa ggcgcactac tgtccggtaa
     5761 aaggaaaaga aaagttgcac gtccttgata aaacgccaag aatggcgtcc taaatgggga
     5821 tttaggtcaa ggacatacga tgaaagatag cgtttttcaa agaatattaa aacccataag
     5881 tagtgaatgg cttaaaaatt gcgtcaatat tttcaattct gattattcct atgaaaaatt
     5941 taagacccaa gaccatatac aaacgatgat ttatgttcaa cttaatcaaa ttagcagcct
     6001 tcgcctgttg gaggaatcaa ttaacaccca agatataggg ttatcgactt ctgtatgtcg
     6061 ttcgacgcta agcgatgcga ataaaaaacg gaaagcggat tgttttttat ggatactcga
     6121 acagttatta acactattac ccaaaaaaca aaagaacgaa ttttctgagg tggtccgtgc
     6181 tcttgatagt agccctatcc aacttaaagg atatggctat gaatgggtaa aacaacattc
     6241 tacgaggcgt tgtgaaggac ttaaacttca tgttgaatat gatttaggct tagcatgtcc
     6301 agcacgtatt gcattaagcc gccctaactt taatgattca tcaatgggta agaaatggcc
     6361 catagaggaa gggataattt atgtcttcga caaagggtac tgtgattata attggtggtg
     6421 gagtattcat caaagaagtg cttattttgt ttcgcgactc aaaagcaatg ccgctatcca
     6481 aattcagcag acatgtcaaa ccaaaggaga tacacctatt ttggaagatg ggttgttcca
     6541 attttccaac tctaatccac gcggcggcaa aaagaactta tatactgctc ttgccagacg
     6601 gattagcgtc aaacgtgagg gcaaagaacc tctcgtactg ggtcactaat cttcttgatg
     6661 agcctgctga gcggattgct cagctctata aatcgagatg ggaaatagaa ctttttttca
     6721 aatggataaa acagcgatta aaaataaaaa aatttcttgg aaaatcagaa aatgctgtaa
     6781 aaat
//
LOCUS       DACVWI010000153         6703 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.153, whole genome shotgun sequence.
ACCESSION   DACVWI010000153 DACVWI010000000
VERSION     DACVWI010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6703
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.153"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            8..712
                     /locus_tag="JBH85_11525"
     CDS             8..712
                     /locus_tag="JBH85_11525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0946833.1"
                     /translation="MGLIGLVNMNIKEKIGQRIQEERIAKGLTRKALEELTDDLKQSR
                     ISNWERGDRTPGPEEIKQLARALDISPAYLMCLTDEKRPKKIPGLGSLVPLLDHQQAC
                     DPKGFIQRVRNEHNSDEISFIPISSELSTRLGENAFALKMKDESMHPELRVNDILIID
                     PNSELHPGSLVAAQLNEENEVIVRRYKQLTLSKEFNPFELRAENDNWGNIKIDKVTDA
                     IIIGVIVCVVRYTGRY"
     gene            861..1535
                     /locus_tag="JBH85_11530"
     CDS             861..1535
                     /locus_tag="JBH85_11530"
                     /inference="COORDINATES: protein motif:HMM:PF13546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAU0946834.1"
                     /translation="MDMLDLYCDYLIFQNKYATATGLSDLVDGAFAHNKVTRFLRFEH
                     FGSKSLWHYVKKPVRSQETVGGVLILDDSIEEKPYSDENEVNCWYYSHAKGAVLKGIN
                     ILYCMVRYADFSVSIGYKVIKKDIAYCDIKTRQTRRKSSVNKNQLFQSLIAQAITNKV
                     MFDYVLADNWFGSKANMVHIHKDLQKSFIIGIKSNLTLALSENDAKNGRYQQVRALEL
                     EEDILA"
     gene            1984..2556
                     /gene="msrA"
                     /locus_tag="JBH85_11535"
     CDS             1984..2556
                     /gene="msrA"
                     /locus_tag="JBH85_11535"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HAU0946835.1"
                     /translation="MRYLFILIALLSQPLFAKPSEAIFAGGCFWCVEADFDKVPGVLE
                     TISGYDGGTEPRPGYALVSSGKTAYVEVVRVVFDSDKVTYQELLDFYWRHIDPTVQNQ
                     QFCDVGKQYRSVIFYLNDDQKKAALASIDEIKKRFPKVYTEVIPSTTFYPAEEYHQDY
                     YQKNPIRYKYYRYNCGRDARIKELWDEKSS"
     gene            2516..3037
                     /gene="msrB"
                     /locus_tag="JBH85_11540"
     CDS             2516..3037
                     /gene="msrB"
                     /locus_tag="JBH85_11540"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HAU0946836.1"
                     /translation="MLVSRSYGMKSLVSFIVSVFMLNTALAYTPEFNKSEKLKQLTPL
                     QYQVTQKAATEKPFDNPYWNNEQAGIYVDIVSGEPLFSSLDKYDSGTGWPSFTKPINT
                     ANVILKPARHYLFFVQTEVLSKNAQSHLGHVFNDGPKPTGERYCMNSAALRFIPKDQM
                     SKEGYEEYLTLFK"
     gene            complement(3030..3617)
                     /locus_tag="JBH85_11545"
     CDS             complement(3030..3617)
                     /locus_tag="JBH85_11545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HAU0946837.1"
                     /translation="MIEQHLRPLYQRLCVNPITPVLIERVTPNQVTFFSGVLGLLVIP
                     ALWLNLPYLAISLLLLSGYCDTLDGTIARLTNHSSDWGSVLDIMTDRVVEVGVVFALW
                     AINPNERGLGSLLMMASILLCITSFLVVGIFKTNDSEKSFHYSPGLIERAEAFVFFIA
                     MMLWPNHFLSLAMIFSLLVIGTAMHRLYEFHKQSI"
     gene            complement(3622..5757)
                     /locus_tag="JBH85_11550"
     CDS             complement(3622..5757)
                     /locus_tag="JBH85_11550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercuric reductase"
                     /protein_id="HAU0946838.1"
                     /translation="MKISAIKTWLPLLIIIVLLGLFLGLGLNKYVSFASLRDNHEWLI
                     AITKSHFYLVSFVFIIIYTVAVALSIPGAIFLTLIGGFLFGILWGTFLVVLSATLGAT
                     ILFFAVQSSLGEVFSKRASGWVKRMRSGFKDNAFSYLLTLRLIPLFPFWVINIVSAVL
                     GVSASTFIIATFIGIIPGSIVYVSVGNGLGELFAASLQPNLGIIFEPKFILPLLGLAA
                     LSLIPVFYKKKGKQGTEKMKDKDLFCDLAIIGGGSAGLSIAAGCSQLGLQVVLVEPNK
                     MGGDCLNYGCIPSKTLLNTAKIFYQTKHSTVLGIQAKSVKIDFLQVMQQVHNVIACIA
                     KNDSVERFTSLGVQVIQEAGHFIGPKQFKLKRKIIRAKHFVIATGSSPAIPPIQNLNK
                     VSYLTNETIFNLKVQPEHLIVIGGGPIGCELAQAFAMLGSKVTILEAFTILPKDDADC
                     VAIIRSQLESMQIALYEQIKINKIEESADKTISVHLENQDNPITITGSHLLVSTGRVA
                     NVDGLGLEKAGVQYTTRGINTNARLQTTNKKIYAIGDVTGPYQFTHMASYQAGIALRN
                     IAFKWPAKVDYKAVPWVTYTEPELAHVGLLASEALKDPTLKITEFAFAEVDRAQAENK
                     VNGKIKIITGKKAKILGVSIVGAHAGELILPWVIAVKERKSLRTFTDAIAAYPTFSEI
                     SKRVAGEYYKPFIFSSKIRTFVRWLNKLG"
     gene            complement(5776..6657)
                     /locus_tag="JBH85_11555"
     CDS             complement(5776..6657)
                     /locus_tag="JBH85_11555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HAU0946839.1"
                     /translation="MSEINYSTVQYYLVLILIFIYLSLFVLEKKWPLRKATRPLLPRL
                     AINFTFTLLVYVIASLFISPLAKATVLFTFSHDFGLLSMLPFNQWVVFILGFLLMDLS
                     FYYWHALNHKLPLLWRFHVVHHADPDLDVSTAMRFHCVEIMYSSLFRLVQLGLIGVSP
                     LLFFCYEFFFQAHTFFQHSNIKLPFRFERLINKIIVTPRMHGIHHSNYLNETNSNYGV
                     VFSFWDRLHQTIKLDIPQQAIIIGVPGYSKPSDNSLIRLLLMPIKAQRHYWQIKKDFH
                     FSRKSKTSDKKVRTLCE"
BASE COUNT         2250 a         1268 c         1258 g         1927 t
ORIGIN      
        1 tcacaatatg ggattaattg ggttggttaa tatgaatata aaagaaaaaa ttggtcaaag
       61 aattcaagaa gaacggatag caaaaggatt aactagaaag gcccttgagg agttaactga
      121 tgatcttaaa caatcaagaa ttagcaattg ggagcgaggt gatagaactc cagggcctga
      181 agaaataaaa caacttgcta gagcactaga tatttcacct gcttatttga tgtgcctaac
      241 cgatgagaaa cgtccaaaaa aaattccagg attagggtca ttggttccac tgctcgatca
      301 tcaacaagcc tgcgatccta aaggattcat tcaaagggtt aggaacgaac ataattcaga
      361 tgaaataagc tttataccga tttcttctga gcttagtact cgtcttggag aaaatgcatt
      421 tgctctaaaa atgaaagatg agagtatgca ccctgaatta agagttaatg atattttgat
      481 tattgatccc aattctgaac tgcatccagg aagtttagtt gcagcacagc ttaacgaaga
      541 aaatgaggtt atcgtgcgta gatataaaca actaacctta tcaaaagaat ttaatccatt
      601 tgaattgcgg gccgaaaatg ataattgggg gaatataaaa attgataaag taactgacgc
      661 tataattatc ggcgttattg tgtgtgttgt gaggtataca gggagatact aatacattta
      721 acctaattaa ttcgatttac cagtgaaatg ttaacggata gttctgagat tttttataaa
      781 ccactcatgt tacgcacgtg aacttgcagt ttgaataaaa agcattagaa ttttgccctt
      841 aattttaggg agtgaattca atggatatgc ttgatcttta ttgtgattat ttaattttcc
      901 aaaacaaata tgcgactgct accgggttat ctgatttggt tgatggagca tttgctcata
      961 acaaagtaac acgatttctt cgttttgaac attttggttc aaaatcactt tggcactatg
     1021 tcaaaaagcc agttaggtca caagaaacag taggaggagt attgatactt gatgattcca
     1081 tcgaagagaa gccctactct gatgagaatg aagtgaattg ctggtattac tctcatgcta
     1141 aaggggctgt actcaaaggg ataaacatct tgtattgcat ggttcgttac gctgacttca
     1201 gtgtatccat aggatataag gtgattaaaa aagatatcgc ttattgtgat attaaaacca
     1261 gacaaaccag aagaaaatca tcagtgaaca agaatcaatt atttcaaagc ttgattgcac
     1321 aggctattac caataaggtg atgtttgatt atgtgctagc tgacaactgg tttggctcga
     1381 aggccaatat ggttcacatc cataaagacc ttcaaaagtc gtttatcatt ggaatcaagt
     1441 ctaacctaac attagcctta tctgaaaacg atgccaaaaa cgggcggtac caacaagtaa
     1501 gagcattaga acttgaagag gatatactgg cttaaaggcc tagacctccc cgtgaggctc
     1561 ctgaaaaagg ttttcaaaaa cgaaaatggc tcaacaggaa ttctctatct tgtttcaaat
     1621 gacatgcaaa gtagtgccga acgtctttat gaagtgtacc ctggcggatt gaagagtatc
     1681 acaagtcaat taagcaaaat gcaagcttaa ccaagtcccc agctcgaatc gtcataacac
     1741 agtgcaatca tatttatgcg tctattattg cttactgcaa gctcgaaatg ctgaagataa
     1801 aaacccaatt aaatcacttt gccattaagt acaaactaat tgttagagcg aaccaaattg
     1861 cctggcaggg gcttaaaaat atggctgctt aaaattgatc gtgggtaaca tgagtatttg
     1921 agctaaaacc ttaaagtaat tttctgctac acttaaaata caaactgtct tccaaggtta
     1981 ggtatgcgct acctctttat tttgatagct cttctatccc aaccactttt tgctaaacca
     2041 tccgaagcca tctttgctgg tggttgtttt tggtgtgttg aagccgattt tgataaagtt
     2101 cctggggttt tagagactat ttcaggctat gatggtggta ctgagcctag gcctggttat
     2161 gcattggtct catcgggtaa aactgcttat gtagaggttg tgcgtgttgt ctttgatagc
     2221 gataaagtga cctatcaaga attactagat ttttattggc gtcatatcga cccaacagta
     2281 caaaaccagc aattttgcga tgttggtaag caatatcgca gcgtcatttt ctatttaaat
     2341 gacgatcaaa aaaaggcagc tttagctagt attgatgaaa taaaaaaacg atttcctaag
     2401 gtatatacag aggtaattcc ctctacaacg ttttatcctg cagaagaata tcatcaagat
     2461 tattatcaaa aaaatccaat tcgttacaaa tattaccgtt acaattgtgg tcgtgatgct
     2521 cgtatcaagg agttatggga tgaaaagtct agttagtttt attgtaagcg tatttatgct
     2581 aaatactgcc ctggcttaca cgcctgaatt taacaaatcc gaaaaactaa aacagcttac
     2641 gcctctacaa taccaagtga ctcaaaaggc tgctacagaa aaaccttttg ataatcccta
     2701 ttggaataat gaacaagccg gaatttatgt ggacatagtt tcaggagagc ctctgtttag
     2761 ttctctggat aaatacgact caggaaccgg ttggcctagt tttacaaaac ccataaatac
     2821 cgcaaatgtt attttaaaac ccgcgagaca ctatttgttt tttgtgcaaa ctgaagtgct
     2881 ttctaaaaat gcgcaatctc atttagggca tgtatttaat gacggcccaa aacccaccgg
     2941 tgaacgatat tgcatgaatt cggcggcatt gcgatttatc ccaaaagatc aaatgagcaa
     3001 agaaggctat gaagagtatt taactctttt taaatagatt gcttatgaaa ttcataaagc
     3061 ctgtgcatcg ctgtccctat cactaacaaa gaaaagatca ttgctaaact taggaagtgg
     3121 tttggccaaa gcatcatggc tataaaaaaa acaaaggctt cagctctttc tattaatcct
     3181 gggctgtaat gaaaactttt ttctgaatca ttagtcttaa aaatacccac aacaagaaaa
     3241 ctcgtgatac aaagtagtat actcgccatc attaacaaag acccaagacc ccgctcattt
     3301 ggattaatag cccataaggc aaacacaaca cccacctcaa ccacgcgatc agtcataata
     3361 tccaatacac taccccagtc agagctatgg ttagttagac gagcaatagt accatcgagg
     3421 gtatcacaat atccagacag taatagtaaa ctaatggcca gatagggtag atttagccac
     3481 agtgcgggta tcactaaaag acccaatacg ccagaaaaga aggtgacttg atttggggtc
     3541 actcgctcta tcaacacagg agtaattgga ttgacacaaa ggcgttgata cagtggccta
     3601 aggtgttgtt ctatcataga tttatcctaa tttatttagc caacgaacga aagttcgaat
     3661 tttagaagaa aatataaacg gcttataata ctctcccgca actcgcttac taatttcact
     3721 aaaagtgggg tacgctgcaa tcgcatcggt aaaagttcgc aaacttttcc gttctttaac
     3781 ggctataacc caaggtaaaa ttaattcacc cgcatgagcg cccactatgc tcacacccaa
     3841 aattttagct tttttaccgg ttatgatttt tattttgcca tttaccttat tttccgcttg
     3901 ggctctgtcc acctcggcga aggcaaattc tgtgattttt aatgtaggat cttttaaggc
     3961 ctcactcgcc aataggccca cgtgggctaa ttcgggctca gtataagtca cccaaggcac
     4021 cgctttgtaa tctacttttg caggccattt aaaagcaata tttctcaatg caatacccgc
     4081 ttgataacta gccatgtgcg taaattgata aggccctgtc acatcgccta tggcatagat
     4141 ttttttatta gtggtttgaa gtctggcatt cgtgtttatc cctctggtgg tgtattgaac
     4201 gcctgctttt tccaaaccga gcccgtccac attagccaca cgacctgttg ataccaacaa
     4261 atgcgagcct gtgatagtaa ttgggttgtc ctggttttcc aaatgaacac taatggtctt
     4321 atcagcactc tcttctattt tgttaatttt aatttgctca taaagtgcta tctgcatcga
     4381 ctcaagttga cttcgaataa tagccacgca atcggcatca tccttaggaa gaatagtaaa
     4441 ggcttctaaa atagtgactt tagacccaag cattgcgaaa gcctgagcta attcacagcc
     4501 tataggacct ccgccgataa caatcaaatg ctcaggttgt acttttaggt taaagatggt
     4561 ttcattagtt aaataagaga ccttgtttaa gttctggata ggagggatgg ctggagatga
     4621 gcctgtagca atcacaaaat gtttggcccg aataattttc ctttttaatt taaactgttt
     4681 tggccctata aaatgccctg cttcttgaat aacctgaaca cctagagagg taaaacgttc
     4741 caccgaatca ttttttgcaa tacacgctat cacattatgc acctgctgca tcacttgcaa
     4801 aaaatcaatt ttcaccgatt ttgcctgaat acctaaaaca gtcgaatgtt tggtttgata
     4861 aaagattttg gcagtgttca atagcgtttt agaagggata caaccgtaat ttaaacaatc
     4921 acctcccatt ttgtttggtt caaccaatac cacttgtaat cccaattgag agcaacctgc
     4981 agcgatactt aagcctgcag aacccccgcc aataatggcc aaatcacaaa ataaatcttt
     5041 atctttcatt ttttcagtac cctgtttacc cttttttttg taaaaaacag gaatcaaaga
     5101 aagagcggct aatcctaata aaggtagaat aaatttgggt tcaaaaataa tccccagatt
     5161 aggctgaagg cttgctgcaa atagttcgcc caatccatta ccaacagaca catagacaat
     5221 agagccagga ataattccta taaaagtggc tatgataaaa gtagaagcgc tcacacccaa
     5281 tacggcagaa acgatattaa tcacccagaa aggaaataat gggataagtc gcaaggtgag
     5341 caaataagaa aatgcattgt ctttaaaccc agaacgcatc cgcttaaccc aacctgaagc
     5401 acgcttggaa aacacttcgc ctaaggacga ttggactgca aaaaaaagaa tcgttgcacc
     5461 taaagtggca cttagaacca ccaaaaaagt tccccaaagt attccaaata agaagccgcc
     5521 tattaaagtc aaaaagatag cacctgggat agagagtgct acagccactg tataaattat
     5581 tataaaaacg aaagagacca gataaaaatg tgattttgtt atggctataa gccattcatg
     5641 attgtctcgt aaactggcaa aacttacgta tttatttaag cctaaaccca aaaaaagacc
     5701 taataaaact attataatta ataagggcag ccaagttttt attgcactaa ttttcataag
     5761 atgatgccct tttcattatt cacataacgt tcttactttc ttatcagaag tttttgactt
     5821 tcgactaaaa tgaaaatcct tttttatttg ccaatagtgg cgttgagctt taattggcat
     5881 caaaagtaac cgtataagac tattatctga tggcttggaa tacccaggta caccaattat
     5941 tatagcttgt tggggaatat ctaatttgat tgtttgatgc aacctatccc aaaatgaaaa
     6001 tacaacccca taattactat tggtttcatt gagataattg gaatgatgaa tgccatgcat
     6061 tcttggagta acgataattt tattaattag ccgttcaaag cgaaaaggca atttgatatt
     6121 gctgtgttga aaaaaagtat gtgcttgaaa aaaaaattca tagcaaaaaa agagtaaggg
     6181 actcactcca atcaacccta attgcaccaa cctaaagaga ctcgaataca taatttccac
     6241 acaatgaaaa cgcatggcgg ttgaaacatc taagtcagga tcagcgtgat gcacgacatg
     6301 gaatcgccac aacaacggaa gtttatgatt tagagcatgc cagtagtaaa agcttaaatc
     6361 cattaacaaa aacccaagta taaacactac ccattgatta aagggaagca tagatagaag
     6421 gccgaaatca tggctaaagg tgaaaaggac ggtggctttt gctaaggggc taataaacag
     6481 acttgcgatg acataaacca agagggtaaa ggtgaaatta attgctaatc gcggcaataa
     6541 tgggcgagtt gcttttctta aaggccactt tttctctaaa acaaacaatg acaaataaat
     6601 aaaaataaga atgagtacta agtaatattg tactgtactg taattgatct cagacattag
     6661 tttaaaaggc tcgtgaattg tttctataaa cttgcctata aaa
//
LOCUS       DACVWI010000154         6684 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.154, whole genome shotgun sequence.
ACCESSION   DACVWI010000154 DACVWI010000000
VERSION     DACVWI010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6684
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.154"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            88..1056
                     /locus_tag="JBH85_11560"
     CDS             88..1056
                     /locus_tag="JBH85_11560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HAU0946840.1"
                     /translation="MSIITTNLNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAV
                     FEMKGRPLNHPLIVHIASNWDLHKLVEEVPEYAHQLASKFWPGPLTLVFYCKKDQINP
                     LITGGQSTIAIRCPDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL
                     TILDGGRCRVGIESTIVDATNPVSYQILRHGIIDEKTIAETIAIGCSTQKNNIRVPGK
                     LDSHYQPQKTLYYFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSA
                     YDLYYQLRLADTSDAICIAIELPPNTSEWQGVRERILKAGFPYSQQ"
     gene            1139..1225
                     /locus_tag="JBH85_11565"
     tRNA            1139..1225
                     /locus_tag="JBH85_11565"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1173..1175,aa:Leu,seq:cag)
     gene            complement(1230..2081)
                     /gene="psd"
                     /locus_tag="JBH85_11570"
     CDS             complement(1230..2081)
                     /gene="psd"
                     /locus_tag="JBH85_11570"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096966.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HAU0946841.1"
                     /translation="MFRDVLKTLPQYLIPKHGITALAGYFADVKNPRLKNFLIQNFIR
                     KFDVDMSEALIEDPKSYDCFNDFFIRHLKPECRPLSQSDVICPVDGCISEIGKIERGQ
                     LLQAKGKYYSVQELLACDGQLAEQFVQGQFATLYLSPKDYHRVHMPIDAELVSMTYIP
                     GALFSVQPATTRVVPKLFARNERLAIFFKTKIGPMVMVMVGATIVGAIGTSWHGDVKR
                     SKELERFDYSEQFLDKIISQGSEMGYFKLGSTVVLLFANGEKIQWDKELLAGSKIQLG
                     KPMAIIT"
     gene            complement(2174..4789)
                     /locus_tag="JBH85_11575"
     CDS             complement(2174..4789)
                     /locus_tag="JBH85_11575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2975 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946842.1"
                     /translation="MGLPKKALKESQLQFLTAGTAVSDSSHQTYKVSFIENGVIKNAF
                     YKKLDPKNHYPELLAKISVAVSLFKRIFQGRRSAEERLVFDDEERLVGTLSISVDGFK
                     GFNFHKESVPQESSAKEQVIPSTRTLIEKSFMEILLGRWFLDDDDGHPHNLSLAGDID
                     FDMFFYWFTIYMKEPRPAIGIPKTRVNLTVRDWEGFPNVKDSKPFHWPTYKNPGQETL
                     PTVLPVQDKLVNLILEKTYPDPGQFEQLAHEPVAQEQKFAAALKILLTYQPEMIRKRL
                     TELFGEMTLNYTSLDETDVALRNQYEKTFPHLCNENTNIKPFVDFIMNLYQMHYDNLY
                     RVVVFYMGCENNGYGVPLPATNSALYHKPSFYKDIVEWARTQNITIFSKDDSSIKFDE
                     DELRRRYHQVWRDAYAPTFRDLLHDSYSLTNKLLQQVSTFHVVLDEVEGKKPTDDTLT
                     NAWELFGTMPELSLEKITPLISVDKDSKLRTALILLVEFTTQFHAVAKTYYQKDRKDL
                     TEEDNLEFSEQLVQLYTNYNLKIRQSLAHTSTLAGEFNRIAVGLKQYTERANFQLHLT
                     TTDEQMKEATVATTPKEILPHTHEDVIRQFNDSLFLWAKNLRPEDLSHHISEIIDKYY
                     APTIELLSKRHRAQPVKEYLQASVNESGENRLAYILSAGEGDTGALNTLLIQHLTPYM
                     LQTYPLLSIRNAVKEGNFDKDLEIFTKAAVDFAKHDRRFIHLYNVEGKSLFFKTMYEW
                     IDELPATKFKGLLESALKDYEGKLWWSTSRRSEVEGYCTKFSQAKIVAMTFLNGKDSS
                     SLNDVLFDKIIAAIQKDINKNKEKLKIPGFRLINCYNAKEHRADYFKEVKNYAEPISH
                     RQETTLNSNVTSLVV"
     gene            complement(5052..6581)
                     /locus_tag="JBH85_11580"
     CDS             complement(5052..6581)
                     /locus_tag="JBH85_11580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946843.1"
                     /translation="MSITAQELVKQYKLRLTPAMENDLLSEESRLKKELEAVPFNSEE
                     TLYKSILQMIIVFYEENTLEENRYLLQDHELIKQLSALMWDDIQIKLIPFLIQKNFTL
                     SEIKELLFDDAYYRSLHVLVDFGLTQDIPELLAHQEKREQLKFINTLANDHCRKLCLI
                     FWVKGSLSIKEIQDIVNATSHYPMLAETLIALDKTKTISIKQLKKLALDPKKHQQESI
                     LYHYSEQFKAYNLRKSDLSQLNLDDLDALGKSFKVLKEAGIANDYAYRLVLKNNKTGQ
                     LLRLFLPGLAKIESLSHRKALIELLYIGAQKGVVTQGKALLQIKDSNLLALSRALRER
                     FICVQQMQDLGFKKEIIAFTGEENNINSSRFRHVIMRVEEKCKDIHERLRKSSLDKDK
                     VGNWQRADEKYRQTLYSIAYDGITKSGVDLHIKMKSAEKEILSIVDPEIKSIIHKVLV
                     VIANIIITALTLGFANDLKESATGNYWFFNQSPSGEVIRALNKEVLTTIDSPELITIL
                     P"
BASE COUNT         2036 a         1360 c         1143 g         2145 t
ORIGIN      
        1 tatagaagct tattcttatt attaaattga gcttaaaaac agatagaaag accctgaaac
       61 ataactattt tttatcgagc cccttatatg tccataatta ctaccaatct caatcgggca
      121 attcatgatt tacagcaagg aaaaccagta gctataccga ctgaaacggt ttacggattg
      181 gcagcaccaa taaacaataa tgctgccatc agagctgtgt ttgaaatgaa aggcagacct
      241 ttaaatcatc ctttgattgt tcatattgct tccaattggg atctgcataa gctcgtggaa
      301 gaggtacctg agtatgcgca tcaattagct agcaagttct ggcctggacc attgaccctg
      361 gtattctatt gtaaaaaaga tcaaatcaat ccgctcatta ccggtggtca atctaccata
      421 gcgataagat gcccggatca tcccttgaca caaaaattgt tacaaaaatt aaatattcct
      481 gtggtggcac cctctgccaa tccttttgga aaaattagcc cgacaaccgc tttgcacgtt
      541 aaacaatcat ttaatgatgc cgagttaact atcctggacg gaggacgctg tcgtgtgggt
      601 attgaatcaa ccattgtaga tgctaccaat cctgtttctt atcaaatttt acgccatgga
      661 ataatagacg aaaaaactat tgctgaaacg attgccatag gttgctcgac tcaaaaaaat
      721 aatattcgtg tccctggtaa attggatagc cattatcaac cacaaaaaac tttatattat
      781 tttgatcaat atgaaaccct ttccgaattt tgtcaaaaac gcaaagggac tgtttatgtc
      841 atagcgaata gacaaccccc tggtgtcgag actaatctct ttcatccact gggaatgcat
      901 cctgaaaaat cggcctatga tttgtattat caactaagat tagctgatac atccgatgcc
      961 atttgtatcg ctatcgagct accacccaat acgagtgaat ggcagggagt acgagaaaga
     1021 atattaaaag ccgggttccc ctattcgcag caataaatct caagtaattt atactttttt
     1081 gatttcgcgc aattctgtat tgacagaaca ctataatttg cgtaacttaa cgccctatgc
     1141 cgaggtggtg gaattggtag acacgctagc ttcaggtgct agtgggggca accccgtgga
     1201 ggttcgagtc ctcttctcgg taccattaat taagtaataa ttgccattgg tttacccaac
     1261 tgaatcttgc taccagccaa taattcttta tcccattgta ttttttctcc atttgcaaac
     1321 aataaaacga ccgtagatcc caatttaaaa taacccattt cacttccctg agatataatc
     1381 ttgtccaaaa actgctcact ataatcaaag cgttctaatt cttttgatct tttgacatca
     1441 ccatgccaac tggttccaat tgcacctaca atagtagccc caaccatcac catcaccatc
     1501 ggaccaattt tcgttttaaa aaaaatggca agcctttcat ttcgtgcgaa caatttagga
     1561 acaacacgtg tagttgctgg ttgaacggaa aacaaagcac caggaatata agtcattgaa
     1621 acgagttctg catctattgg catatgtacc ctgtggtaat ctttcggcga taagtatagc
     1681 gttgcgaatt gtccctgcac aaattgttcg gccaattgcc catcacaggc taaaagctct
     1741 tgtacagaat aatatttgcc tttagcctgc aataactgtc ctcgttcaat cttgcctatt
     1801 tcgctgatac aaccatctac tggacaaatc acatctgact gagaaagagg acggcattcc
     1861 ggctttaaat gacgaataaa gaaatcatta aaacagtcat aagacttagg atcttcaata
     1921 agcgcctcac tcatgtcgac atcaaactta cgaataaagt tttgaattag gaaattcttg
     1981 agacgagggt tcttaacgtc agcaaaatac cctgctaaag cagtgatacc gtgtttcgga
     2041 ataaggtatt ggggtagtgt cttcagtaca tcacgaaaca tactttttac tcaaaactga
     2101 aaaaagagaa taataaccta aagcttattg tattgtcaca ataagacgag taaatctcca
     2161 tgccagagaa aatttagacc accaagctcg taacatttga attcaaagta gtttcttgcc
     2221 tatgagatat aggttctgcg taatttttga cctctttaaa ataatcagcc ctgtgttctt
     2281 tggcattgta gcaattaatt agcctgaatc ctggtatctt taatttttct ttgtttttgt
     2341 ttatgtcttt ttgtatagcc gcgatgattt tatcaaataa aacatcattc agagaggagg
     2401 aatctttccc gtttaaaaag gtcatagcaa caatttttgc ttgtgagaat tttgtacaat
     2461 aaccttccac ctccgatctc cttgaagtgg accaccataa tttaccttcg taatctttta
     2521 atgcagactc aagcaacccc ttaaacttag tcgcggggag ctcatcaatc cactcataca
     2581 ttgttttgaa aaatagagac ttaccctcca cattgtataa atgaataaaa cgcctgtcat
     2641 gtttggcgaa atctacagct gctttggtaa aaatttccaa atccttatca aaattacctt
     2701 ctttaactgc attacggatg ctcaacaaag gataagtttg tagcatataa ggcgtgaggt
     2761 gttgaataag caaagtattt aaagcacctg tatcaccctc ccctgcgctt aaaatataag
     2821 ccaatctgtt ttcaccactt tcatttacgc tggcttgtaa atattcttta acaggttgtg
     2881 ctctatgacg ctttgataac agttctatag ttggggcata atatttatca attatttcag
     2941 agatatgatg agataaatct tcaggtctta agttcttggc ccaaaggaat aaagaatcat
     3001 taaactgcct aatgacgtct tcatgcgtat gcggcaatat ttctttgggg gtcgtggcta
     3061 cagttgcctc cttcatctgc tcatctgttg tcgttaaatg taattggaaa ttggcccgct
     3121 ctgtgtattg ttttagccca acggctatgc gattaaattc accggcaaga gtgcttgtat
     3181 gtgccaaact ttgacgaatt ttcaggttat aattcgtata caactgtacc aattgctcgg
     3241 agaactcaag attgtcctcc tccgttaaat cctttcggtc tttctgataa taagtcttag
     3301 ctactgcatg aaattgagtt gtaaattcaa caagcaatat taacgctgtt cttagtttgc
     3361 tgtctttatc tacactaatt aatggggtaa ttttctcgag tgataactca ggcatggtgc
     3421 caaacaactc ccaggcattg gttaaggtgt catcggttgg ctttttgcct tctacttcat
     3481 ccagaacaac gtgaaatgta gacacttgct gcaatagttt attagtcagg ctataggagt
     3541 catgcaacag atctctgaat gtaggcgcat aagcatctcg ccacacctga tgatatcttc
     3601 ttcgcaactc atcttcatca aatttgatgc tgctgtcgtc cttgctaaaa atcgtaatat
     3661 tttgagtcct tgcccattcg actatgtctt tatagaaaga aggtttgtgg tagagcgctg
     3721 aattcgttgc aggcaacgga actccgtacc cattattttc acaccccata taaaaaacca
     3781 ctactcgata caaattatca taatgcattt gatataaatt cattatgaaa tcgacgaatg
     3841 gttttatatt ggtgttttca ttgcataaat gaggaaatgt tttctcgtac tgattgcgca
     3901 gggcgacatc cgtttcatct agagaagtgt agtttagcgt catctcacca aaaagctcgg
     3961 tcaaacgctt tcttatcatc tccggctgat aagttaacaa tattttcaac gcggcagcaa
     4021 atttttgctc ctgagccact ggctcatgag cgagttgctc aaattgacca ggatccgggt
     4081 acgtcttttc aagaattaaa ttaaccagct tatcttgaac aggcaaaacc gttggcaaag
     4141 tttcctgccc cggattttta tatgttggcc aatgaaaagg ctttgagtct ttgacattag
     4201 gaaatccttc ccaatcgcgc acagtcaaat taacccttgt tttaggtata cctatagctg
     4261 gcctgggctc tttcatatag atggtaaacc aataaaaaaa catatcaaaa tcaatatccc
     4321 cggccaaact tagattatgc gggtgaccat catcatcatc aagaaaccac cttcccagaa
     4381 ggatttccat gaaacttttt tcaattaagg ttcttgtgct gggaatcacc tgttctttgg
     4441 cggaagactc ctgaggcact gactctttat ggaaattaaa ccctttaaat ccgtcaacac
     4501 tgatagataa agtacctacc agcctctctt catcatcaaa tacaagacgt tcttctgccg
     4561 accttcttcc ctgaaaaatt cttttaaata aagagacagc gacacttatt ttcgctaaaa
     4621 gttccggata atgattttta ggatccagtt ttttataaaa ggcattttta ataacgccat
     4681 tttcaataaa actgaccttg tatgtttgat gagagctatc cgaaaccgca gtccccgctg
     4741 ttaaaaactg cagttggctc tctttcagtg cttttttggg caaacccata tatcaaatcc
     4801 tttaaatcag atcaatccat cctatgcccc atattaatca gaaatagtca agaagttcaa
     4861 gtataatttt catacaaaat tacacttgac tagaaacaaa ctagacatct ggcacacata
     4921 atgagttata aatgaaaatt tgcttgttta tttgtcatga tgacgaactc gaaatcatca
     4981 ttttaattaa acattcaggg ttgtcttata ttgcccaaag caataagggt ttgttaacag
     5041 aagccctatg attagggcaa aattgtaatt aactccggag aatcaatagt agttaatact
     5101 tctttattta aggctcttat gacttctcca gatggacttt ggttaaaaaa ccaataattg
     5161 ccagtggcac tttcttttaa atcgttagca aaacccaagg tcaatgccgt aataataata
     5221 ttagctataa cgactaaaac tttatgtatt attgacttta tttcaggatc aacaatactc
     5281 aatatttcct tttccgcact tttcatttta atgtgcagat caacacctga ttttgttatg
     5341 ccatcatagg caatgctgta gagtgtttgc cggtattttt catcagcacg ctgccaattt
     5401 ccaactttat ctttatcaag agatgatttt cgtaatcttt catgtatatc cttgcatttt
     5461 tcttctaccc gcataatgac atgcctgaaa cggctggagt tgatattgtt ttcttcgcct
     5521 gtgaatgcaa tgatctcttt cttaaatcct aaatcttgca tctgctggac acaaataaat
     5581 cgttcgcgca acgctcgtga caaagccaat aaattgctgt ctttaatttg taaaagcgcc
     5641 tttccctgag taacaacccc tttttgggct cctatatata aaagttcaat taaagctttt
     5701 ctatgagaga gcgattcgat tttagcaagc cctggcaaaa acaagcgaag caattgccct
     5761 gttttattat tttttagtac caaacgataa gcataatcat tggcaatccc cgcttctttc
     5821 aagactttaa aagattttcc taaagcatcc agatcatcca aatttaattg ggataaatcg
     5881 gatttacgca aattgtaggc tttaaattgt tcagagtaat gatataaaat agattcctgt
     5941 tgatgttttt tgggatccag agccagtttt tttagctgtt ttatagaaat ggttttggtt
     6001 ttatctaatg ctatcaatgt ttcagccagc attgggtaat ggctggtagc attaacaatg
     6061 tcttgtattt ctttgatcga taaactcccc ttaacccaaa atataagaca tagttttctg
     6121 caatgatcat ttgctaaagt attaatgaat tttagttgct ctcttttttc ctgatgggct
     6181 aataattcag ggatatcttg agttaaacca aaatcgacaa ggacatgaag cgaacgataa
     6241 tacgcatcgt caaataagag ctctttaatc tcacttaaag tgaaattttt ctgaattaga
     6301 aaaggaatta acttgatttg gatatcatcc cacatcaatg cgcttaattg ctttattaac
     6361 tcatgatctt gcaataaata acgattttct tccaaagtat tttcttcata aaatacaata
     6421 atcatttgca aaatactttt atacagagtt tcctcagagt taaaaggaac cgcttcaagc
     6481 tccttcttta atctgctttc ttccgacaat aaatcgtttt ccatggcggg agtcaaacga
     6541 agcttgtatt gttttaccaa ctcctgggct gtaatactca ttggaagtta acctcttgtt
     6601 catttactaa ttaaccctat ttcatggaga tagggtaata aagattattt tttggatcaa
     6661 aatttggtta ttttgaacga taca
//
LOCUS       DACVWI010000155         6665 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.155, whole genome shotgun sequence.
ACCESSION   DACVWI010000155 DACVWI010000000
VERSION     DACVWI010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6665
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.155"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(427..1290)
                     /locus_tag="JBH85_11585"
     CDS             complement(427..1290)
                     /locus_tag="JBH85_11585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946844.1"
                     /translation="MVITMSREEEQAKKKLEEDKVQEDKFLRSTVADYIREFSSMLHA
                     CEQRARRKPADRTALSAEKDAHTLREFLDDLQKAQQEGHGDLPILRTPAEWAAIDQMR
                     QRCVQYQIDPMQNHKMKNEKTEKPTHDSQVSEENLRRLQILDRYKETPRSEEEEEKER
                     KRLINLATSGNNTFIAYEDLETIAKSGKPFFIPSNSKEDACLSCGNGRLYKGSLSEIR
                     MQLEFDLKKDPDNEQMRTGLRRIENEIFMKPNLASPKKEKDFTEAGITPQENTYTTPN
                     PFSIKPKKEPI"
     gene            1583..2794
                     /locus_tag="JBH85_11590"
     CDS             1583..2794
                     /locus_tag="JBH85_11590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0946845.1"
                     /translation="MVMKTMRLFKGILFTFCGIIFCFNSHAALEHEKLVNYIALGEFS
                     RETAEIALKKMPPLDTLTVHYDLQLYKINYKTQSPDGNLTIASGLVAMPIHPVGQVGI
                     ISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTLHPYVQA
                     ETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVS
                     AVAPGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTL
                     IPELMDGYHAVDEILQALPQDPLLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTA
                     PLLLVGTKGDRDVPYAGAEMAYHSFRKYSDFVWIKSVSDALDHVQAHPFVLKEQVDFF
                     KQFERQEAMNK"
     gene            complement(2838..3830)
                     /locus_tag="JBH85_11595"
     CDS             complement(2838..3830)
                     /locus_tag="JBH85_11595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HAU0946846.1"
                     /translation="MNQKQIKNELALKWALEHLALNDEFKIIDQQKIIETAYSTVHRI
                     TSSESNVYYLKQTPEMLYLEPQTLTYIKEQRCHNIPQIIAENKHLNCFLMLSCGDETL
                     RNLFKENIDLEMLKAGILNYTKIQRLVENQLPQLMELGLPDWRLEKFSSLYDQLIQQE
                     ELLSSDGLSKNEITLLNKAHEICFNLCESLSKYQIPETINHCDFHENNMILNQKTGNV
                     SIIDWGETVITHPFFSLNGCLWNITFFYPIKQSDKIYEILQRQCITPWLGLHDETDLL
                     NALKIANQLNGVFAALSYKRIYDATMDQSQTVQQEHPGSIAGCLRSFINHFHLA"
     gene            4029..4532
                     /gene="msrB"
                     /locus_tag="JBH85_11600"
     CDS             4029..4532
                     /gene="msrB"
                     /locus_tag="JBH85_11600"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HAU0946847.1"
                     /translation="MTKLISVVFYLFIIPNVMAYTPQFNKSEQLKKLTPLQYQVTQNG
                     ATEKSFDNAYWNNKEEGIYVDIVSGEPLFSSNDKYDSGTGWPSFTKPIDTSYLVFHTD
                     RSYFFIVRTEVRSKYANSHLGHVFKDGPEPTGLRYCMNSAALKFIPKKEMEQAGYGEY
                     LYLFNKK"
     gene            complement(4631..5905)
                     /locus_tag="JBH85_11605"
     CDS             complement(4631..5905)
                     /locus_tag="JBH85_11605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1106 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946848.1"
                     /translation="MRNNKMGEKIPSFFHPDNKAASHQILVDDPLIIKDSELLDLLNA
                     SIEKDEKYHLLISCIRSHSPKYLNQRIMVKSHITIEGDERTPPHWTPLATKREYGYPT
                     DGDQNNELTTTLANIIATNELNFSSAQMVALFRELMIKGVDFTAMDQSPYLNLIHPKS
                     GNNPLKSLIAASLGDPEIIHLLHDFMSYIENIVPRDKQLLIINNQDNFEFEAMQPAEF
                     LLRLGHEDLALRLYRMGAQPTVQAFRLACSSYGTTIYYEEAMECIQFMMNSVELSETD
                     LVEGKNSLQKASPGQYNEMLTRILRSLQEDSKLDTGHSSLYEMIQKDYIENYQDKRFI
                     SFRDFCQKEAKIDHPLIQKYALLRIKQENVGNGYFSDYYRTESRHLSENKWAFLNKNQ
                     RASQLLINLINAIDLGLIDMELGSLSITSAKL"
     gene            complement(6147..6566)
                     /locus_tag="JBH85_11610"
     CDS             complement(6147..6566)
                     /locus_tag="JBH85_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HAU0946849.1"
                     /translation="MNFSAWYFPSLAALILYGAWGYWGTRASDFINPLSITFYSSIGV
                     LISGIIALILLGFKPELSVKGSTYGLLNGLANGIACIFFILALRNGPTMPVVLVTSMY
                     PMITLIFCMIFLKQELSLKQGLGMVFALTALILFSTE"
BASE COUNT         1954 a         1168 c         1250 g         2293 t
ORIGIN      
        1 aagctccgaa tatatgaccc ttagcaaagc ccaagggtta tttactaaag ttactggcat
       61 aaaaactgat tcgcaacggg cagtagaaga gatttttagc aaggcactca aagatttaca
      121 atcacccaag cttgcaatga ggtagctcaa atttgattgg gcagttgcca tttatcagct
      181 gactgcctca tcaaattcaa tttaaatttt tcaatttggc gaagactgta gcagtacaag
      241 ttgttctcat agccatgtcc ctgttctacc agcattgttt aaataactgt gttttgtttg
      301 tcttgacagc ggtgcggcat tttattggtt gatagaaagc ttatgttact aaccattaag
      361 cttcatcact ttagcaagat ttccagttgt ttggatccaa gtggttaagc tcatcagtac
      421 ataggcttat ataggttctt ttttcggttt tattgaaaat gggtttggag tagtgtaagt
      481 gttttcttgt ggagttattc ccgcttcagt aaagtctttt tcttttttgg gtgatgctaa
      541 attaggtttc ataaaaattt cattttcaat tcttctcaaa ccagttctca tctgctcatt
      601 atccggatcc ttttttaggt caaactctaa ttgcatacga atctctgata atgaaccttt
      661 atacaaacgc ccattaccac aagatagaca agcatcctct tttgagttgg atgggataaa
      721 aaaaggttta ccactcttgg ctatcgtttc caaatcttca taagcaataa aagtattatt
      781 accgctggtt gcaagattta taagtctttt tctttctttc tcttcttcct cttcagagcg
      841 aggtgtttct ttgtatctat ctaatatctg tagtcggcgt aaattttctt cagaaacctg
      901 agagtcatgg gttggtttct ctgttttttc attcttcatt ttatggttct gcatgggatc
      961 gatttggtac tgtacgcacc tttgtcgcat ttgatcgata gcagcccatt cggccggggt
     1021 tcgtagtata ggtaggtctc catgtccttc ttgttgagct ttctgaaggt catcgaggaa
     1081 ttcacgaaga gtatgtgcgt ctttttcggc tgagagtgct gtcctgtcgg caggttttct
     1141 tcttgctcgt tgttcgcaag catgtaacat actactgaat tcccggatat aatcagccac
     1201 tgtacttctg agaaatttgt cttcctgtac tttatcttct tctaattttt tcttagcttg
     1261 ctcttcttct ctggacattg tgattaccat aaattatttg aacatcaatt cactgtggaa
     1321 ttgaaaataa tcttatctta taaaattaat gatagtatat ttttctggag ttacttatct
     1381 ctctgagttt tccaataaaa ttcatgcatt ttttagcaac aagagcattt gtagatgata
     1441 cttcatttat ttcatcaggc gttttaattg aatacttgtt tgttagatga tgaaagggac
     1501 agattttttc ctttgcatta atgcaagtaa ccgcttcatt tgattctcct tattaaacat
     1561 gtaattatcc acatttttat agatggttat gaaaacgatg cgtttattca aagggattct
     1621 ttttacattt tgcgggatta ttttttgctt taattcccat gctgctctgg agcatgagaa
     1681 gctggttaat tatattgctt tgggtgaatt ttccagggaa acagcagaaa tcgctttaaa
     1741 aaaaatgccg ccattagaca cccttacagt acattatgat ctgcaattat ataaaattaa
     1801 ttataaaacc cagtcaccag atggaaatct gactattgcc tcaggattag ttgcaatgcc
     1861 aattcatcct gtggggcaag tgggaattat tagctatcag catggcaccc gatttgaacg
     1921 caatgatgta ccttccagaa ataatgaaaa aaactatata taccttgctg cctatggtaa
     1981 tagtgcaggt tatatgacgg tgatgccaga ttatcttggt ctgggagata atgaattaac
     2041 actccaccct tatgttcagg cagaaactct tgccagcagt agcattgata tgttgtttgc
     2101 tgctaaggag ttagccaaca ggcttcatta cccaataagc gataaattat atctggcagg
     2161 ttattcagaa ggcggattct caactattgt aatgtttgaa atgctggcaa aagagtatcc
     2221 tgatttacct gtctctgcgg ttgccccagg ttcagctcct tatggctggg aagaaaccat
     2281 gcattttgtg atgttggaac caggacctcg tgctacagcc tatttggcct atttctttta
     2341 ttctctgcaa acttataaga gttattggtc tggttttgac gaaatttttg ctcctcctta
     2401 caatactctt atcccggaat tgatggatgg atatcatgct gttgacgaaa ttcttcaagc
     2461 cttaccacaa gatccgctgc ttatttttca gccaaaattc tctaatggaa ttattagtaa
     2521 gacagataga aataccgaga ttttaaaaat taattttaac cactatgatt ttaaacctac
     2581 agctcctttg ttattggttg gcactaaagg tgatcgtgat gtaccttatg caggagctga
     2641 aatggcatat cattccttta ggaaatatag tgattttgtg tggataaaat ccgtcagtga
     2701 cgcattggat catgtgcaag ctcatccctt tgtactcaaa gaacaggtgg atttttttaa
     2761 acaatttgag cgtcaagaag caatgaataa ataatgtcat tttatgaaac tcagcaatca
     2821 cagttttgat gtagcggtca agctaaatga aaatggttta tgaatgatct taggcagccg
     2881 gctatagaac cagggtgttc ttgttgaact gtttgagatt gatccatagt tgcgtcataa
     2941 attcgcttat aacttaatgc agcaaaaacc ccattgagtt ggttagcaat ttttagcgca
     3001 tttaataaat cagtttcgtc atgcaggccc aaccaaggag taatacattg ccgttgcaat
     3061 atttcatata ttttgtcgga ctgttttatt gggtaaaaga aagttatgtt ccacaaacag
     3121 ccattcagag aaaaaaatgg atgagtgata acggtttctc cccagtcaat gatgcttaca
     3181 tttcccgtct tttgattgag aatcatgtta ttttcatgaa aatcacaatg attaattgtt
     3241 tctggaattt ggtatttgga gagtgattca cataaattaa agcaaatttc gtgtgctttg
     3301 ttcaggaggg taatctcatt ttttgatagt ccatcacttg ataaaagctc ttcttgttgt
     3361 atcagttggt catatagtga tgaaaatttt tcaagccgcc aatcaggaag acccaattcc
     3421 ataagttgtg ggagttgatt ctctactaac cgttgaattt tagtgtaatt aagaatacct
     3481 gctttaagca tttccaaatc aatattttct ttaaacagat tccgtaaagt ttcatcgcca
     3541 caagacagca tcaaaaagca atttaagtgt ttattttctg caatgatttg gggaatgttg
     3601 tgacatcgtt gttccttaat ataggttaat gtttggggtt ccaggtacaa catttccggt
     3661 gtttgcttca gataataaac gttgctttcg gaagaggtga ttctatgcac tgttgaataa
     3721 gcggtttcaa taattttctg ttgatcaatg attttaaatt catcgtttaa tgccagatgc
     3781 tcaagagccc attttaaggc gagttcattt tttatttgct tttgattcac agtttgctca
     3841 tgactaataa tctttaatat gaatttaatg tataaaatag tttaagtcca aacatcatgc
     3901 ctgtcttttg ctttgggtat gaatattaat tccgatggaa acgtagattt ctgataatag
     3961 gggtacgctt gctacactat aagtaagtgt tatcaatgtg ggcatgaaca gtgaatgtgg
     4021 agtatgacat gacaaaacta atcagcgttg tattttatct gtttataatt ccaaacgtga
     4081 tggcctatac ccctcaattt aacaaatcag agcagcttaa gaagctgact ccattgcaat
     4141 atcaggtaac ccaaaatgga gcaacggaaa aatcatttga taatgcatac tggaacaata
     4201 aagaggaagg tatttatgtt gatatagtat caggagaacc tttgtttagt tctaatgata
     4261 aatacgattc aggaacgggt tggcccagtt ttacaaagcc aatcgataca tcctatttgg
     4321 ttttccatac tgacagaagc tattttttta ttgtgcgtac tgaagttcgc tctaaatacg
     4381 ctaactctca tttaggccat gtctttaaag acgggccaga accaaccggg ttgcgatatt
     4441 gcatgaattc agctgccttg aaatttattc caaaaaaaga aatggaacaa gctgggtatg
     4501 gagagtacct ttatctgttc aataaaaaat aaactgcctt tgtttttcca gcaagttagc
     4561 ctatggagtt cattgagctc aaatcaatgt aggaatagaa atgagctgaa cttgccttat
     4621 gttcctaaga ttatagtttg gccgaggtta tacttaatga tccaagttcc atgtcaatta
     4681 atccaaggtc aattgcatta atgagattta tcagcaattg actggctctt tgattcttat
     4741 tgaggaaagc ccatttattc tcagacaaat gtctggattc tgtgcggtag taatctgaga
     4801 aataaccatt acctacgttt tcttgcttga tgcgtaaaag agcatatttt tgaatcagcg
     4861 gatgatcaat tttcgcttct ttctgacaaa aatcacgaaa tgaaatgaac ctcttatcct
     4921 gataattttc tatgtagtct ttctgtatca tttcatagag agaagaatgt ccagtatcaa
     4981 gtttcgaatc ctcctgcagg gaacgtaata ttcttgtcag catctcgttg tattgtcccg
     5041 gacttgcttt ttgcagggaa ttttttcctt caactaaatc cgtttcactc aactcaacag
     5101 aattcatcat gaattgaatg cattccattg cttcttcgta gtaaatagtg gtgccataac
     5161 tggagcaagc cagtcggaat gcttgtacag tcggttgagc tcccattctg tataagcgta
     5221 aagccaaatc ttcatggcct agccttaata aaaattcagc cggctgcatc gcctcgaatt
     5281 caaaattatc ttgattattg ataatcaata attgtttatc gcgaggaact atattttcaa
     5341 tataactcat gaagtcatgc agtaagtgga taatttcagg atcccccaaa ctggctgcta
     5401 tcaagctttt gagagggttg ttgccagatt ttggatgtat taaattgagg tagggggatt
     5461 gatccatggc ggtaaaatca actcccttta tcattaactc tctaaacaag gcaaccattt
     5521 gagcagaaga aaaatttaat tcattggtag caatgatatt tgccagtgtt gttgtcaatt
     5581 cgttattttg atccccatcg gttggataac cgtattctct ttttgttgct aaaggtgtcc
     5641 agtgaggggg ggtacgctca tcaccttcga ttgttatatg gcttttaacc ataattcttt
     5701 gatttaaata tttgggactg tgactgcgaa tgcaggatat taggaggtga tatttctcgt
     5761 ctttttcaat tgatgcgttt aacaggtcta acaattcgct atctttaatg attaacgggt
     5821 cgtctaccaa tatttgatgt gaggcggcct tattatcagg atgaaaaaaa cttggaatct
     5881 tttctcccat tttattattt cgcatagtta agaacctctt tcaaaaaatt taaaagcgac
     5941 agctaatgta acaaaagctt cgaacccatg tttgtttgta acaatcaaca actgtgtttt
     6001 tattcctatt ttaggcatga tgcttttatc ttgattagat tgtttatatt agtcaagaag
     6061 atttttgctt ggccaaagtt tttaagtaaa tctctttaat tttgataagt caaagaaatg
     6121 taggctattt catctgattt gggttttcat tcagttgaaa ataaaattaa ggcagtcagt
     6181 gcgaaaacca tacctaatcc ttgttttaaa cttaattctt gtttgagaaa aatcatgcag
     6241 aatattaaag taatcatggg atacatagag gtgaccaaaa ctaccggcat ggtggggcca
     6301 ttacgtaatg ccaaaataaa aaaaatacag gcaattccat tagccaaacc atttagcaaa
     6361 ccgtaagtac tccctttgac agaaagttca ggcttgaaac ccaataaaat caaagcaata
     6421 atcccggaaa ttaaaactcc tatacttgaa taaaaagtaa tagacagggg attaatgaaa
     6481 tctgaggctc ttgttcccca atacccccaa gcgccataca gaattaatgc ggccaaagat
     6541 ggaaagtacc aagcgctaaa attcataatt ttatcttatc aagcaatttg tttgaggttt
     6601 gctcaggata actgttcatt agtgaaaata atactgtttg ttactaaatt ttatttatta
     6661 tcatg
//
LOCUS       DACVWI010000156         6625 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.156, whole genome shotgun sequence.
ACCESSION   DACVWI010000156 DACVWI010000000
VERSION     DACVWI010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6625
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.156"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            34..240
                     /locus_tag="JBH85_11615"
     CDS             34..240
                     /locus_tag="JBH85_11615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAU0946850.1"
                     /translation="MSEKIRGTVKWFNESKGFGFLESGGKDYFVHFSAIQGSGFKTLA
                     EGATVMFKACNGQKGPQAEEVEVV"
     gene            complement(579..2312)
                     /gene="ceg34"
                     /locus_tag="JBH85_11620"
     CDS             complement(579..2312)
                     /gene="ceg34"
                     /locus_tag="JBH85_11620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg34"
                     /protein_id="HAU0946851.1"
                     /translation="MLMIMARVIVTYSPEVGGSSVLSLKESFTHVGSEVIDGDYRKMM
                     EDIPKEEFDKLYSTKEGRQRLFAHAKAKAMELLKNVDVLALSGNNSMIDPELFNQTRD
                     PDQNYDFSRTIAELALVHVATEKGMPILGVCGGHQVIAVYGGGEICDLNSDKLNTQKV
                     MNYDAIKVHKGSLIAQIIGGKQVQKEMDTARKAFNERMNQYNRLSEKLNALEKLNLVQ
                     EAGKLDALGKLEELDKSEVQLLLKLTGLNIEEELFDLRELVGEIGETNQLKTELQNIK
                     TSLNGLEDSHPLTSPHYETEFFGAHEQVVSKLAAGFQHTGTASDNESNEAAESEFGVP
                     IITTQFHPEVGAKGLPEAHFFYLRTEAEQEMNLNIFRYLDKAGDAYNKKKNLMVELKQ
                     INPKNQDVLLQPSQIKKTSKERQQEREKQGNKSSSKRQTESYFFESILSKIGSYLSAI
                     GEFIREGIGKFLRDILSSMFTYDSVSRLKKKEQKQSKSEHSKIDLIDSKSNSYSTVFH
                     DMKVKSPSEILRENPAKLWAEKDDSHEKTITNQTDMDNSNKVRITTELVQEEVGQEFD
                     ENHTSLYRNNL"
     gene            2658..3635
                     /locus_tag="JBH85_11625"
     CDS             2658..3635
                     /locus_tag="JBH85_11625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946852.1"
                     /translation="MDMDFCKYYQYSRQHDFPADLFMTCKGSTVLMVPPEGFCFNYET
                     STSNSFQSFMSIKDISTKALAEFTAMVLQLEKEEIKVLTLSQRQDLPDAVFPNNWFST
                     HIDARGNNILIIYPLLAKNRQAEVNIKGLMEVLNQAQFEVHEIIDLRNDKDEILEGTG
                     SLVLDRENHLLYASLSPRTSLNLVNKVADILGYTPIVFNSVDRQNKPVYHTNVIMSLS
                     QCYAIICLDSIHDTQQKAMLSESFKETGKTMIDISWNQAQHMCGNVLELYNKKGESLL
                     ILSEQAKRHFTHEQLRIIQQHSRLISTDIPTIEAIGGGSARCMMAEIFY"
     gene            3783..5039
                     /locus_tag="JBH85_11630"
     CDS             3783..5039
                     /locus_tag="JBH85_11630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2828 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946853.1"
                     /translation="MKISELKKLVAELNKEVSPKVTCTNIINLAGNLSEIIEYFEQDE
                     HVGPELIYRIEAVICEFWKLVSLTLPYEEWQSSIQVAPWLILQQSLSKAGLLPTDFHH
                     PILYQRLKERYESFGHSELGVDQLLPLLIRCSRMTGYANKDPQSLDTYPHSPLNKQIE
                     ARRPQELAKLKDILCLLRAIFYLIHHCCTIEQLTLIPYLIYFRNPTTDEERRSELAIF
                     NWLTQKPADCLEFFKTNEDYIDTRSFRQISELAPLRPFIPTARSDFIKITNREHWIYP
                     FIQSRTNTSRSEYDLLNDAVNWLDTDFATEKDKSYHAALEFAHTVKKQANILTQREMK
                     IVHSALYVFCLDKYIKHRKADPRPRCTPFSLSGETKCQAAEKKQQEILGKPTKFGFFE
                     NLALNEGRLKTLTKTFEMPPYPLLRN"
     gene            complement(5106..>6625)
                     /locus_tag="JBH85_11635"
     CDS             complement(5106..>6625)
                     /locus_tag="JBH85_11635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein SidH"
                     /protein_id="HAU0946854.1"
                     /translation="NSLHNELGIYTSLFIDKISPEIHLHQSEILGNVAFDSKMGAEIG
                     SKINAITPGILLNNNPLKEAYVDLNNTLKEINTLLDEENKKTRDNPCRNEKIAKLTSL
                     KDRLSDLDSIPKENTVEFLKKMQEETRSSLKSLESNDALINIYDVLNSLKETIENGSD
                     LPEIKKDKLQMISDVQNILSNFDKNPAERLNLAVQILNDSNPEVLSKTKGNFLIGEAF
                     KGQVFTNYINTKISEQLNNELGPYGKVFLKQIMPDFIAKKSEIIKEIAIDNMETGLET
                     QFKIHAPAIFEKNKELKAAYEQLNVHLKEVQSLIEAEEKKPKGNPCREEKIAALRSHQ
                     SQLMNTQRIPDHETLRFLQEQNKSAKSFMGKLEKYDTMISVYDSLTEIREHVSNHKSL
                     SKEIKDEKIQEISKMEDMLKTTSKEPSIRLAEVKAHGLSDQCKNVLLKNSDNFLVSFF
                     KTLFSKLFNIKNENETLVSSFKQRLQNIKGPEPVATPMETPENEAPLVNANITRF"
BASE COUNT         2011 a         1236 c         1116 g         2262 t
ORIGIN      
        1 tacaatggat gcgtaacaat ttaggaaatt aacatgtcag aaaaaattcg tggtacagtc
       61 aagtggttta atgagtccaa aggtttcggt tttttagaaa gtggcggcaa agattatttt
      121 gtgcatttta gtgcgatcca aggcagtggt tttaaaaccc tggctgaagg cgctactgta
      181 atgtttaaag cttgcaatgg tcaaaaagga cctcaagctg aggaagttga agtagtctaa
      241 tttttttata ttagccctgt ttttttaagt ataatttaat ccttagaaaa gcagggcttt
      301 ttttatctac aacattctta aaatttctgt tctgcactta aaaaaactct gctcaagcaa
      361 ttgctttggc aaatattggt taaagccagc tcaattatat gataaagttt gtgccatcat
      421 tcaattcaat agcgctcaaa ttattattgg caaatacctg tgctgataat agctgttact
      481 agcattctgt ttttcaatgg aggcagcata gtagataaat atcaatcccc catcgtttct
      541 ggtagactgc ataaagacgt tcggtcatat cttgtctatt ataaattgtt tctgtacaaa
      601 ctagtatggt tctcatcaaa ctcttgtcca acttcttctt gaaccaattc tgttgttatt
      661 cttaccttat tagagttatc catgtcagtt tgattggtga tggttttctc atgactatca
      721 tctttttctg cccacaactt tgctggattt tctcgtaata tttcagaagg tgacttaact
      781 ttcatatcat gaaacacagt agaatatgag ttacttttgc tatcaatgag atctattttc
      841 gaatgctcag attttgattg tttttgttcc ttttttttca gtcttgaaac ggaatcatat
      901 gtaaacatac ttgataggat gtctcttaaa aatttaccaa ttccttctct tatgaattct
      961 cctatggcac ttaaatatga accaattttt gagagtatac tctcaaaaaa gtaagattct
     1021 gtttgtcttt ttgatgaaga cttgttccct tgtttttccc tctcttgctg acgttctttg
     1081 cttgtttttt taatttgaga gggttgaagc aatacatctt gatttttcgg attgatttgt
     1141 tttagctcaa ccattaggtt tttcttttta ttgtaagcat cacctgcttt gtcaaggtat
     1201 ctaaatatat taagattcat ctcttgttca gcttctgttc ttagataaaa gaaatgagcc
     1261 tcgggcagtc ctttagcacc aacttcggga tggaattgcg tggttataat aggaacacca
     1321 aactctgatt ctgctgcttc attggactca ttatcacttg cagtacctgt atgttgaaag
     1381 cctgctgcta atttggaaac aacttgctca tgcgcgccaa aaaactccgt ttcataatgc
     1441 ggggaagtaa gaggatgaga atcttctaat ccatttaaac tcgtttttat attttgtagt
     1501 tctgttttta attgattagt ctcgcctatt tctcctacta attctcttaa atcaaacaac
     1561 tcctcttcta tatttaatcc agtcaacttt aataaaagtt gcacttcaga tttatctaac
     1621 tcttctaatt ttcctaatgc atctaatttc cctgcttcct gtactaggtt taatttttcc
     1681 aatgcattta gtttttctga caatctatta tattggttca ttctttcatt aaacgctttt
     1741 ctggctgtat ccatttcttt ctggacttgt tttccaccaa taatttgagc tattaatgaa
     1801 cccttatgca ctttgattgc atcataattc atgacttttt gtgtatttaa tttgtcagaa
     1861 tttaaatcgc atatttctcc accgccatat actgcaatga cttgatgccc accacaaaca
     1921 cctagaatag gcataccttt ttctgtcgct acatgcacta atgccaattc agcaattgtt
     1981 ctggaaaaat cataattttg atcggggtct cttgtttgat taaaaagctc aggatcaatc
     2041 attgaattat taccagataa tgctaacaca tcaacatttt taagtaattc cattgctttt
     2101 gctttggcgt gtgcaaataa tctttgtcgg ccttctttag tggaatacaa cttatcaaat
     2161 tcttctttgg gtatgtcttc catcattttc ctgtagtcgc cgtcaataac ttcggaaccg
     2221 acatgtgtaa atgattcttt caacgaaaga acactgcttc caccaacttc aggactatag
     2281 gtaacaatta ctcttgccat gatcataagc atatttgaat gagcaaatga tattataaat
     2341 gatcattatt aagggatcct tatttattgg tttggttttg agcaattcgc aatttcaggt
     2401 aattatttga tgaaactgaa aattaaaagg agttctggac aagagcaaat tatttgcagc
     2461 cgtgaactat gaccttcgct ttgataccat gggatacaat atagagcttg attagcggcc
     2521 ttattcctgg aacactattt accctatttg ttttgcctgc gatttacaac atcatcaaat
     2581 ccaaactaat tgatttacaa aaacaagcgg caaaaatcgg tgcagcaaag aataaagatt
     2641 tatttaaaat gcaataagtg gatatggatt tttgcaaata ctatcagtat tctaggcaac
     2701 atgatttccc cgctgactta tttatgactt gtaaaggatc tacggtatta atggttccac
     2761 cggaaggatt ttgctttaat tatgaaacat caaccagcaa ctctttccaa tcattcatgt
     2821 ctatcaaaga cataagcact aaggcgctag cagaatttac tgctatggtg ttacaactgg
     2881 aaaaagaaga gataaaagta ttaaccctat cgcaaagaca ggatttaccg gatgccgtct
     2941 ttcccaataa ctggttttca acacatattg atgcaagagg gaataatatt cttattattt
     3001 atccattact agctaaaaac agacaagcag aagtcaatat caaaggatta atggaagtac
     3061 tgaaccaagc tcaatttgaa gttcatgaaa taattgactt aagaaacgat aaggatgaaa
     3121 tccttgaagg aactggcagc ctggttttag atagagaaaa ccaccttctt tatgcgtctt
     3181 tatccccgag aacttccctg aatctggtaa acaaagtcgc tgatatcctg ggatacactc
     3241 ctattgtatt taatagtgta gatagacaga acaagcccgt ctatcatacc aacgtcataa
     3301 tgagtctaag ccaatgctac gcgattattt gcctggattc tattcatgat actcaacaaa
     3361 aagccatgct ttcagaaagt ttcaaagaaa caggcaaaac aatgattgac attagttgga
     3421 atcaagcaca gcacatgtgt ggtaatgttt tggaacttta taacaaaaaa ggtgagagcc
     3481 ttttaatttt atccgagcaa gctaaaagac actttactca tgagcagcta agaatcatcc
     3541 aacaacactc cagattaata tcaacagata tccctacaat agaagccatt ggaggtggaa
     3601 gcgcacgatg catgatggct gagatttttt attaaaagtt caaaaaattt tgctaccagt
     3661 ttaatttcct ttcagatatt ctctaaaacg agacttaaga aaaaccccaa ggtcaaggta
     3721 aaaaaagatt ggaggtttac ttaaggcctg taaaaaacta atcattcagg cagggaatca
     3781 tcatgaaaat tagtgaatta aaaaaactgg ttgctgaatt aaataaagag gtttcaccaa
     3841 aggttacatg cacaaacata attaacctgg ctggcaattt atcagaaatc attgagtatt
     3901 ttgagcagga tgaacatgtt ggtccagagc ttatataccg aatagaagcg gtgatttgtg
     3961 aattctggaa gctagttagt ctcacattac cttatgaaga atggcaaagc agtattcaag
     4021 ttgctccctg gcttatatta cagcaatcat tatccaaagc cgggttactg cctacggatt
     4081 tccaccatcc cattttgtac cagcgcttaa aagaacgcta tgaaagcttt ggtcacagcg
     4141 agttaggagt tgaccagctc ttgcccttgc ttatccgttg cagccgcatg actgggtatg
     4201 ccaataaaga tccacaatct cttgatactt atcctcactc accattaaac aaacaaatcg
     4261 aagcgagaag accacaggag cttgccaagc taaaagacat cctctgcctt ttaagagcca
     4321 tcttctattt aattcatcat tgttgcacca ttgagcaatt gacgttaatt ccttacctga
     4381 tttattttcg taatcccact acagatgaag aaagacgatc tgaattggcc atttttaact
     4441 ggctaaccca aaaaccagct gattgccttg aattctttaa aaccaatgaa gattacattg
     4501 acacaagatc atttaggcaa attagtgagt tggcaccatt acgccctttt atcccaactg
     4561 cgcgtagtga ttttattaaa ataactaata gagaacactg gatataccct tttattcaaa
     4621 gcaggacaaa tacatcaaga tcagagtatg atttgctgaa tgatgcagtc aattggttag
     4681 atactgattt tgcaactgag aaagataaat cctatcatgc tgctttggag tttgcccata
     4741 ccgtcaaaaa gcaagcaaac attttaaccc aaagggaaat gaaaatagtg cattccgcgc
     4801 tctatgtctt ttgtctggac aaatacataa aacatcgtaa agcagatcct cgtccaaggt
     4861 gcactccgtt ttcactttcg ggagaaacaa aatgccaagc agccgaaaaa aaacagcagg
     4921 agatactggg aaaaccaacg aagtttggat ttttcgaaaa tctggccttg aatgaaggaa
     4981 gattaaaaac actgaccaag acttttgaaa tgccacccta tcctttacta agaaattagt
     5041 taaatttaat tgttgttttg actgaaatga aagattatgt ctgattaaat caaaactaat
     5101 tcgaattaga atctggtaat attggcattc actaaaggtg cttcattttc tggagtctcc
     5161 ataggcgtag cgacgggctc tggacccttg atattttgca gcctttgttt gaatgatgaa
     5221 accaaagttt cattttcgtt tttaatatta aataatttgg aaaatagcgt tttaaagaaa
     5281 ctcaccagaa aattgtcaga atttttaagt aatacatttt tacattgatc acttaggccg
     5341 tgagccttga cctctgccaa acgaatagaa ggctctttgc tggttgtttt tagcatgtct
     5401 tccatctttg atatttcctg aattttttca tctttgattt cttttgacaa actcttatga
     5461 ttactaacat gctctcttat ttctgtcagt gagtcataca cactgatcat cgtgtcatat
     5521 ttttctaatt tacccataaa acttttcgca cttttattct gctcctgcaa aaacctgagt
     5581 gtctcatgat ccggaatacg ttgggtattc attaactgag actgatggga tcttaatgcg
     5641 gctatttttt cttcacggca gggattacct ttaggtttct tttcttctgc ctcaatcagg
     5701 ctctgtactt cttttagatg gacgtttaat tgctcgtaag ctgcttttaa ctccttattc
     5761 ttttcaaaaa tagcaggagc atgaatttta aactgggttt caagccctgt ttccatatta
     5821 tcaatggcta tttctttgat tatttcagat tttttggcaa taaaatcagg catgatttgc
     5881 ttcaagaata cctttccata aggaccgagt tcgttgttca attgctcgct gattttagta
     5941 ttaatataat tagtaaaaac ttgtccttta aatgcttctc caataagaaa gtttccttta
     6001 gtttttgaca agacttcggg gttagagtca tttaatattt gcactgccaa atttaaacgc
     6061 tcggctgggt ttttatcaaa attcgagagg atattctgaa catcggaaat catttgtaac
     6121 ttatcttttt tgatttcggg taagtcactc ccgttctcta tggtttcttt taaagaatta
     6181 agtacatcat aaatattgat taaggcgtca ttgctttcca gagatttcag cgaagacctt
     6241 gtttcttctt gcatcttctt aaggaattcc actgtatttt ctttaggaat actgtccaaa
     6301 tcactcaagc gatcctttag agaagtcaat ttggctattt tttcattgcg acaaggatta
     6361 tccctggtct ttttattttc ctcatcaagt aatgtattaa tttccttcaa tgtattattt
     6421 aaatcaacgt acgcctcttt caatggattg ttattcagca aaattccggg agtaatcgca
     6481 ttaatttttg agccaatttc agcccccatt ttgctgtcaa atgcaacatt tcccaatatt
     6541 tcagattgat gcaaatgaat ttccgggctt attttatcga taaataaact ggtataaatt
     6601 cccaattcat tgtgcagaga gtttt
//
LOCUS       DACVWI010000157         6557 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.157, whole genome shotgun sequence.
ACCESSION   DACVWI010000157 DACVWI010000000
VERSION     DACVWI010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6557
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.157"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            104..1114
                     /locus_tag="JBH85_11640"
     CDS             104..1114
                     /locus_tag="JBH85_11640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAU0946855.1"
                     /translation="MKYRKLGKVGPDVSALGFGCMGLSEFYGKPARLDDAIKIIRNAH
                     DQYQVNFFDTADIYGKGKNEELVGKAIKPFRNQIILATKCGVVRTGSNDEMSVNNSSA
                     YIRTACEKSLKRLNTDHIDLYYLHRYDHQTPIEEVMEIMHDLIDEGKIGYIGLSETDA
                     DTIRAAYTAVKDKLVAVQTEYSLRVRAPATAVLGTCRELGICFVAYCPIARGFLSGKI
                     KKPNLLRTNGFDFRTNIPQFQPENFDQNLGLVNELETIGEKTGYTPAQLSLAWLLAQG
                     EDIIPIPGTSNPQHLAENMRSIDIFLTPEQMKDLENAYKNNPVAGKRLSKELMATFHL
                     KE"
     gene            1222..2034
                     /locus_tag="JBH85_11645"
     CDS             1222..2034
                     /locus_tag="JBH85_11645"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HAU0946856.1"
                     /translation="MDYYFTKGKPQLVNMKTPVYLVTQFQQLMDLMQNQYQVSCLELM
                     QRSGKAACDFLVYRWPKVKKISIFCGRGDNGGQGYVLAQQAKKMGMIPTVWQVGHQMS
                     MSKPPQMHEEVWYEMNSCHQQGILLHTYSPDIDLGDPELIVDALFGVGLYGHVRPEIA
                     SLLQRLQQFTVPILAIEVPTGINASTGEIAGNALAATATITFLCMKLGLLINDGKIYS
                     GEIAFDDLLAPEAIYQQVKGIEKSSLLDSSTCFSKKIWYRNKTQKGWQLSIN"
     gene            2146..3972
                     /gene="typA"
                     /locus_tag="JBH85_11650"
     CDS             2146..3972
                     /gene="typA"
                     /locus_tag="JBH85_11650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HAU0946857.1"
                     /translation="MIEKIRNIAIIAHVDHGKTTLVDKLLQQTGTLNERAPKVERVMD
                     SNALEKERGITILAKNTCVYWKGYQINIVDTPGHADFGGEVERILSMVDSVLLLVDAV
                     DGPMPQTRFVTQKAFARGLNPIVVINKIDRPGARPDWVMDQVFDLFDNLGANDTQLDF
                     PVVYTSALNGYAKLNLEDNATDMSALLQTIVDKVTPPCVDANGPFQMQISSLDYSSYV
                     GTIGIGRITRGQIKAKSPVKIIDKDGNMRSGRLLQLLGFKGLERVEVEEASAGDIIAI
                     TGIESLNISDTICDPNLVEALPALLVDEPTISMTFQVNDSPLAGQEGKYVTSRKIRER
                     LNTELLHNVALRVEDCDDPDKFRVSGRGELHLSILIETMRREGYELAISKPEVIIREV
                     EGEQQEPYEHLTVDVEENHQGTIMEKLGERRGEMQNMVPDGKGRVRLDYIIPTRGLIG
                     FHNEFLSCTSGTGLMYHVFDHYGPLIKGRIGKRLNGVMIANCPGTARAFALFNLQERG
                     RLFLEPQSVCYEGMIVGIHARDNDLVVNVTKEKQLTNIRASGSDENIILTPPVKLSLE
                     QALEFIDDDELVEVTPLSIRLRKKFLKEHDRKKASRTATSEE"
     gene            3979..4866
                     /locus_tag="JBH85_11655"
     CDS             3979..4866
                     /locus_tag="JBH85_11655"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HAU0946858.1"
                     /translation="MKQKFKRAILYARQHRANQEVNESLHRLVDFLSTQDIEIFQDSD
                     TAASFELKAPVLPREKMGAKHDLIIVVGGDGSLLSASRMAIKVNTPVIGINRGRLGFL
                     TDILPQDIESHLGPVLNGQYNEEERFLLHTKIYDKENSYFEGDALNDVVLGRGSETHL
                     IEFDVYINQQLVSHYRSDGMILSTPTGSTAYALSAGGPIMHPQLNAIVLVPMFSHSLS
                     SRPLVIDGEAEIELYISKSNETDLRISCDGHESRVVKPGQKVAVKKNGNRLRLLHPLD
                     YHYYDTLRSKLGWESKHQG"
     gene            4870..6537
                     /gene="recN"
                     /locus_tag="JBH85_11660"
     CDS             4870..6537
                     /gene="recN"
                     /locus_tag="JBH85_11660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HAU0946859.1"
                     /translation="MLTTLRIEHFAIVKQLELDFTQGMTTFTGETGAGKSIMIDALLL
                     ALGEKADPSVVRPGEEKCDITAGFCFDESSELAQWLAEHDISCHDGEIYLRRIIYAEG
                     RSKSYINGQPFPLQKIKELSEKLVHIHGQHQHQTLMQHATHRQQLDRYANNHLLLNDV
                     NTLYKQHQQIVQEINALQSQEQQADRIKLLQFQIDELQALDIQDGELEALHQEHQILH
                     HAREYLQLSQQINELLNSDDQPNICSGLNQIFQLIQQLPQEQAQIKNTAELINSALIQ
                     CEEAITEMQQFADKIQLDPERLQEVEARISSIHQLARKYHLDSKSLQEHEKTLQNELE
                     SLQNVESKLAHLHLQLAQINKVYESAALKLSESRKIHAKKLAQEITASIQQLGMPKGW
                     IEIEITPLEKMQAHGLDKVEYKVCTNPGMEPDSLNKIASGGELSRISLAIQMITAQKG
                     STPTLLFDEVDVGIGGSTAALVGKMLRKLGERLQVFCVTHQPQVAASAHHHFLVTKHS
                     NNNQTFTHISLLKASDKIAEIARMMGGLTITEQTLSHAKELISLSNE"
BASE COUNT         2111 a         1318 c         1356 g         1772 t
ORIGIN      
        1 taccatttca gaaataaaat cacaatcatt aatatgttac tgccaaataa ttctatactt
       61 tattcaactg tccaaataaa accatgtcag ttgaggataa accatgaaat atcgcaaatt
      121 gggaaaggtg gggcctgatg tctcagcatt gggctttggg tgcatgggat tatcagagtt
      181 ttatggcaaa cccgctcgcc ttgatgatgc aatcaaaatt attcgtaatg cgcatgacca
      241 ataccaagtt aatttctttg atacagctga tatttatgga aaaggtaaaa atgaagaatt
      301 agttggtaaa gcgataaaac cctttcgtaa ccagattata cttgcaacga aatgcggagt
      361 agtaaggaca ggctctaatg atgaaatgag tgtcaataat tcatctgctt atatcagaac
      421 agcctgtgag aaaagcctaa aacgcttaaa tactgaccac attgatctct actatttgca
      481 tcgttatgac catcaaacac caattgaaga agtgatggag ataatgcatg accttattga
      541 tgaaggcaaa attggttata ttggtttatc tgaaactgat gctgatacca ttcgggcagc
      601 ttatacagca gtcaaggaca aactggttgc tgttcaaact gaatattcac ttcgagttcg
      661 agctccggcg acagcagttt tgggcacctg ccgtgaattg ggtatttgtt ttgttgccta
      721 ctgccccata gcacgtggtt tcctcagtgg aaaaattaag aagcccaatc ttttaaggac
      781 aaatggcttt gatttcagaa ctaatattcc gcaattccaa cctgaaaact ttgatcaaaa
      841 tcttggctta gtcaatgaac ttgagaccat aggagaaaaa acaggctaca ccccggcaca
      901 attatcatta gcttggctat tggctcaagg agaagacatt atccccattc ccggaacctc
      961 gaatccacaa cacttagcag aaaatatgcg ctcaattgat atttttctaa ctcctgaaca
     1021 aatgaaagat ttggaaaatg cttacaaaaa taatcctgtt gccgggaaac gattatctaa
     1081 ggaactgatg gcaacctttc atttaaaaga ataagctgta tgtgaatagc ataggagaat
     1141 gacgctttct taaccgcaaa tcaggaaact ttccaacatt ctaaaaacca tgtttacaaa
     1201 agttagaaaa gattttttta tatggactat tattttacta aaggaaaacc acagctggtc
     1261 aacatgaaaa cgcctgttta tcttgttaca caatttcaac aactgatgga cttaatgcaa
     1321 aaccaatatc aagtttcttg tctcgaactt atgcagcgtt cgggcaaagc agcctgcgac
     1381 tttttggtgt atcgttggcc gaaagttaaa aaaatcagta ttttttgtgg tcgtggtgat
     1441 aacggaggac aaggctatgt tttagctcag caggcaaaaa aaatggggat gatcccaaca
     1501 gtttggcaag taggacacca gatgagtatg tcaaaaccac ctcaaatgca tgaagaagta
     1561 tggtacgaaa tgaattcatg ccatcagcaa ggtattcttc tgcatactta ttcgcctgac
     1621 attgatttag gcgatcctga attgattgtc gatgcccttt ttggcgtagg gttgtatggt
     1681 catgttcgcc cggaaatcgc ttcgcttctt caacgcctcc aacagttcac tgtacccatc
     1741 ctggctatcg aagtgcctac aggcatcaat gccagcacag gtgaaatagc aggtaatgcc
     1801 ttggctgcaa ccgccaccat taccttcttg tgtatgaaat taggcttatt aataaatgat
     1861 ggaaaaattt atagtggaga aatagcattc gatgatttac tggcacctga agcaatttat
     1921 caacaagtca aaggcataga aaagtcaagc ttgcttgata gttctacttg cttctccaaa
     1981 aaaatttggt atcgcaataa aactcaaaaa ggctggcagt tgagcatcaa ttaaagagta
     2041 gatattcttt aatgagcgat tagtgtataa tgttaaatct atgaacaatt gtcagttatt
     2101 atcttaaatt attaaatctc gctattcccc aactaaaggt tttttatgat tgaaaaaatt
     2161 cgcaatattg ccattattgc ccacgttgac catggcaaaa ctactcttgt tgacaagctc
     2221 ttgcaacaaa ctggaacgct caatgagaga gctccaaaag ttgaacgcgt gatggactcc
     2281 aatgcacttg aaaaggaacg tggaattact atcttagcca aaaacacttg cgtttattgg
     2341 aaaggttatc aaattaatat tgtagatacc ccagggcatg cggattttgg cggcgaagtg
     2401 gaacgtattc tttctatggt tgacagcgtt ttattgctgg tcgatgcagt tgacggcccc
     2461 atgccacaaa cccgctttgt cacccagaaa gcatttgccc gtggcttaaa ccctatagtc
     2521 gtgatcaata aaattgaccg tccaggagca agacctgatt gggtcatgga tcaggtgttc
     2581 gacttgttcg ataacttagg cgccaatgac acccaactag acttccctgt agtttatacc
     2641 tccgctttaa atggctatgc caaacttaat ttggaagaca atgcaacaga tatgtctgcc
     2701 ctactgcaaa caatcgtaga taaagtcaca ccaccttgtg tcgatgccaa tggtccgttt
     2761 caaatgcaaa tcagctctct cgattattct tcttatgttg gcaccatagg cattggccgg
     2821 attacacgcg ggcaaattaa ggcaaaatct cctgtaaaga ttattgataa agacggtaat
     2881 atgcgcagcg gacgactgct ccagttactg ggattcaaag ggctggaacg cgttgaagtc
     2941 gaggaagcca gtgccggtga tattatcgcg ataaccggaa ttgagagcct gaatatatcc
     3001 gacacgattt gcgaccccaa cctggtggag gcattgccag cacttttagt agatgaacct
     3061 acaatcagca tgacttttca ggttaatgac tcgcctctgg ccggccaaga aggtaaatac
     3121 gtcacatcaa gaaaaattcg tgaacgctta aatactgaat tactgcataa tgtggcgctt
     3181 cgcgtagagg actgcgatga tcctgataaa ttcagagttt ctggtcgcgg cgaattacac
     3241 ttgtcgattc ttatcgaaac gatgcgccgt gaaggctatg aattggcaat aagcaaaccg
     3301 gaagtgatta ttcgcgaggt agaaggtgaa caacaggagc cttatgaaca cctgacagtt
     3361 gatgttgagg aaaaccatca aggtaccatt atggaaaaat tgggtgaacg ccgaggcgaa
     3421 atgcaaaata tggtgcctga tggcaaaggc agagtacgtt tggattacat catcccgact
     3481 cgcggattaa tcggttttca caatgaattt ttatcctgca cttccggtac cggattaatg
     3541 tatcatgtct ttgatcacta cggtccgttg attaaaggac gcatagggaa gcgtctcaat
     3601 ggcgtcatga tagctaattg tcctggtact gcccgggctt ttgccttgtt caatttacaa
     3661 gaacgtggaa gattattttt agagcctcaa tcagtctgct atgaaggaat gattgtaggt
     3721 atccatgcca gagataacga cctggttgtt aatgtcacca aagaaaagca attaacaaac
     3781 atcagggcat caggttcgga tgaaaatatt atcctgactc ctccggtcaa attatctctt
     3841 gagcaagcgc tggaatttat cgatgatgat gagttagttg aggttacccc gttatctatt
     3901 cgtttacgta aaaaatttct caaggaacac gatagaaaaa aagcctctcg taccgccaca
     3961 agtgaagaat aacacattat gaaacaaaaa tttaaacgag ccatcttgta tgcccgtcaa
     4021 cacagagcga atcaggaagt caatgaaagc ttgcatcgac tggttgactt tttaagcacg
     4081 caagacatag aaatctttca ggactcagat actgcggcca gttttgaatt aaaagcccct
     4141 gttttaccta gagaaaaaat gggggcaaaa cacgacttga ttattgtcgt gggtggtgat
     4201 ggcagtttac tttctgcctc acgtatggct ataaaagtta atacaccggt catagggatt
     4261 aacaggggga ggctaggttt tttaacggat attttacccc aagacattga gtcccattta
     4321 ggccctgtgc ttaatggaca atataatgaa gaagaacgct tcttattaca tactaaaata
     4381 tatgataagg aaaacagtta ttttgaaggc gatgcactca atgatgtcgt attaggcaga
     4441 ggaagtgaaa cgcatttgat agaatttgat gtttacatca atcagcagct ggttagccat
     4501 taccgttcag atggaatgat tttatccact ccaactggct caacagccta tgccttgtct
     4561 gcaggaggac cgataatgca tcctcaactc aatgccatcg tcctggtacc catgttttca
     4621 cacagcctaa gttcccgacc actcgttatc gatggggaag cagaaattga attgtatatc
     4681 agcaaatcaa atgaaaccga tttgcgtatc agttgtgatg gtcacgaatc ccgtgtcgtt
     4741 aaaccgggac agaaagtagc agtcaaaaaa aacggtaatc gattgcgttt gttacaccct
     4801 cttgattatc attattatga tacattacga agcaaacttg gttgggaatc aaagcatcag
     4861 ggataaaaca tgctcacgac attgcgcatt gaacattttg ctattgttaa acaactggaa
     4921 ctcgatttta cacaaggcat gaccaccttt acgggcgaaa caggcgctgg caaatccatc
     4981 atgattgacg ccttgctgtt agcattaggt gaaaaagcag atccttctgt agtccgcccc
     5041 ggcgaagaaa aatgtgatat cacagccgga ttttgtttcg atgaatcatc agaactcgct
     5101 caatggttgg ctgagcacga tatttcttgc catgatggtg aaatctatct aaggcgcatt
     5161 atttacgcag aaggccgctc caaatcttat attaatggcc aacctttccc tttacaaaaa
     5221 ataaaggagt taagtgaaaa actggtgcac atccatgggc aacaccagca tcaaacactc
     5281 atgcaacatg caacacatag acaacaactt gatcgctatg ccaataacca cctcttgtta
     5341 aatgatgtca atacactcta taaacaacat caacaaatag tacaagaaat aaatgcatta
     5401 caaagtcagg agcaacaagc agaccgcatt aaattattac aatttcaaat tgatgaatta
     5461 caagcgctgg atatccagga tggtgaactg gaagccttac atcaagagca tcaaattttg
     5521 catcatgcca gagagtatct gcagttaagt caacagatca atgagctatt gaatagtgat
     5581 gatcaaccga atatttgctc tggtttaaac cagatttttc aactcatcca gcaactccct
     5641 caagaacaag cgcaaataaa aaacacagct gagttaatta attcagcctt gattcaatgt
     5701 gaagaagcaa tcactgaaat gcagcaattc gcagataaaa ttcagctgga tccggaaaga
     5761 ttgcaagaag tggaagcccg aatcagctct attcatcaac tagcccggaa gtaccatctt
     5821 gatagcaaat cgcttcagga gcatgaaaaa acattacaaa atgaattgga aagtttgcaa
     5881 aatgtagaaa gcaaattggc acatctgcat ttgcaattgg ctcaaatcaa taaggtatat
     5941 gaaagcgccg cattaaaatt aagtgaatca cgcaaaattc acgcaaaaaa actggctcaa
     6001 gaaataacgg ccagcattca gcagttaggg atgccaaaag gatggattga aattgaaatc
     6061 actcctttag aaaaaatgca agctcacgga ttggataaag tggaatacaa ggtatgtact
     6121 aaccctggga tggaacctga ttcattgaac aaaattgcct ctggcggaga attatcccga
     6181 atcagtcttg caatacagat gattacagca caaaaaggtt caactcctac cttattattt
     6241 gatgaggtcg atgtgggtat tggtggctcg actgctgcac tagttggaaa aatgctgaga
     6301 aaacttggag aaagattgca ggttttttgt gttacccacc agccgcaagt tgctgcctcg
     6361 gcacaccatc actttttagt caccaaacat agtaataaca atcaaacttt tactcatatt
     6421 tcattgctta aagcatccga taaaattgcc gagatcgctc gcatgatggg tgggctcact
     6481 ataacagaac aaacactttc tcatgcgaaa gagctgatat cgctgagcaa tgagtgaaca
     6541 cgtcgatcat tttcggg
//
LOCUS       DACVWI010000158         6550 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.158, whole genome shotgun sequence.
ACCESSION   DACVWI010000158 DACVWI010000000
VERSION     DACVWI010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6550
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.158"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            232..1257
                     /locus_tag="JBH85_11665"
     CDS             232..1257
                     /locus_tag="JBH85_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946860.1"
                     /translation="MGWTDRFWNAYRVVTNTVIEGAANSLNAAGSLACLLGGAGVSLS
                     YSMSETIKAGYFGSVGVAGTVNLDVTAVEFNYGFNQTIPFRRDLLEKSDGGSYALNDF
                     ANPGTIFMISSLAILSGTTLRTFGANLKKWQQNREDKHHFITKYGTDLEPPSYKEYLH
                     VNAESFFNSLAIASFSSLLAKNVLDFSIKDLSKYHFTYPFNGTNITGSVKTPDYTGPV
                     TSEFFPLDFFVSQNTTIHTDYLNLIVNEKVKANAMTNVTYGGGVHLEPNHQSSAPLLA
                     ASATIGISTYLAGTFFGKKILRERDERLQHSRSSSYSIVSGTFWDNKHDIEAKGDTKF
                     EHSHSLQ"
     gene            1320..2513
                     /locus_tag="JBH85_11670"
     CDS             1320..2513
                     /locus_tag="JBH85_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HAU0946861.1"
                     /translation="MVFKSRLVGIILLCFSSITGWCLSQSPEEDRIIVSNCLYEQLKD
                     KARLIAQSDHFSFIAIPIDENITNTLQKMRPVCGNYLNAEPYIQQTSNRFLDSKKLLD
                     KLTSYHSISTANPYPINHEAQVHSLFEQIDPAKIWQTNQHLTSYINRSAKSRTGVEAA
                     QWFKQQFDTLAQDYGRKDVESYFVKTGNKFIQPSVVTVIGKDKPGEAIVIGAHIDTLD
                     GNMPGADDDSSGISVELEMARVVFSSNFELNRPIYFIAYAAEERGLIGSGYVVQDFLQ
                     KKIPVKAVMQLDQAGYRANAKDQTIWLLKDYVDKGLTEFTAELLTRYVKTPVGYTKCG
                     YACSDHVNWTNEGFKTTYPSATTLDDDNPYVHTSNDTLDILNLEHMVNFTKLGLAFIV
                     ELGLN"
     gene            2548..3462
                     /locus_tag="JBH85_11675"
     CDS             2548..3462
                     /locus_tag="JBH85_11675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946862.1"
                     /translation="MLCNGSLLMKTEALLSWLNVESNESYDSIRIKYQLRLEALEKEE
                     RIKKMGGINPFAPKIPLNNPRIITSKEIQEAWAAIDSLSKYQQFKGLVAQEENLSTIP
                     NKKMDSKREETKLTHFVRERAQGPRGRRLPAHLQAKIKRVSLDKPHSKLITEGAEQQI
                     NAILDKTTLSVSDLQSAVYTAVQNYTNYHMKSENKNNPKYNRGQGDGFFSFFRHGSFG
                     ITTANNLYTSINAKNATLDETIEKLKDFLGHSSRAYHHHSFTSYLADALAEKGLLTSH
                     PASRYKQEDVVNQLDQWIAQNSTVNFLK"
     gene            complement(3574..6531)
                     /locus_tag="JBH85_11680"
     CDS             complement(3574..6531)
                     /locus_tag="JBH85_11680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0946863.1"
                     /translation="MIGVGLNWHMIDKMRKSKKPHPLNHIASGDNFSHLNLLERGLIS
                     QLIELSYDENTLHTLSLSGLKLLGKHPLLKNTITAVWHHDGSHINILASNGLKFDAPK
                     ELEKFLAVVSDWHFLKIYKTKLKKHCEEKLKQRIDICLDKYQDNLFCISFWFDSIDCN
                     FEMLMPFFKDILGLLNLSLAKLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAF
                     ENITLYNAREAMNKTVASLLRSPVEDAQLFEEINQTLKSGNTWKGQIRSRKKDGSYWV
                     AQTIIVPVMDDELGRITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVADGIFIHN
                     LQGAFLEVNEAACLSLNYSREELINSYVWDIEVGFSQESLNQLWENVQKGPINTEGMH
                     RRKDGTTFPVDVRLAVFNATGEKLVLAIVRDITLQKRSEATIRKLTRALEQSPVLVII
                     TDKTGTIEYVNAKVIEQTGYRKEELVGGNTRILRSGQTPHEIYKTMWEHLANGEEWHG
                     ELLNKNKSGEHFWVSAIISPIRNDNEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLT
                     NLPNRLYAVNKLERAISKSHINNQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSER
                     FLSMIRQTDTIARLGGDEFMMILENIMQDKDAESIAKKCREICSQPFVIESQELLVST
                     SIGIAIYPEHGKDAKTLMRNADTAMYQSKIRGKNNWTVFQNTMIEGANNHIRIKTELH
                     QAFTRNELYICYQPIIELKENKVVAAEALLRWQNTTLGQINPDQIIPLAEETGMIIPL
                     GYWILDKVCTQAKEWEFITGSKIKVAVNISTLQLKQKDFIHKVQLILKRTKLSADSLI
                     FEVTESAFIDDSKFILSQLNKLSDMGIHFSLDDFGVGYSFLQYIKSYPFKNLKIDRVF
                     IQGVNTNHNELSLINSIITMARNLKLSVIAEGIETAEQLELMRSMNCDMVQGWYFSKP
                     LSGDKFLFYLMNK"
BASE COUNT         2084 a         1333 c         1117 g         2016 t
ORIGIN      
        1 tagcaacaac tttcgattat atgtaatagt taataccatt agtcaacgtg aaaaccattc
       61 cataatgacc taaacaaaac cacaaagggg ctatttttct actaaatgct attttttgcc
      121 acaaataaat ctggctttta aaaaaaatat gttattcttt ccaacatcac tgattcgtac
      181 ttaatcaaag tggcgaattt attttttatc atttaacaaa agactttaaa tatgggatgg
      241 actgatcgat tttggaatgc gtatcgcgtg gttactaata ccgtaatcga aggcgcggca
      301 aactctttaa atgcagctgg atcattagct tgcctgctcg gaggcgctgg ggtctctctc
      361 tcttactcca tgtctgaaac aataaaagca gggtacttcg gatcagttgg ggtagcaggc
      421 acagttaatt tggatgtgac tgcagtagaa tttaattatg gatttaatca aaccattcct
      481 tttcgcagag atttactgga aaaatccgac ggtggcagtt atgcattgaa tgattttgcc
      541 aatccaggta ctatttttat gatcagttcg ctggctattc tttccggaac cactttaaga
      601 acttttgggg ctaatcttaa aaaatggcaa caaaacagag aagacaaaca ccactttatt
      661 accaagtacg gcactgacct ggaaccccct tcttacaaag aatatctgca tgtcaacgca
      721 gaatccttct tcaattcttt ggcaatagcc tcattcagca gtcttttggc aaaaaatgtt
      781 ctggattttt caattaagga tttatcgaaa tatcatttca cttatccttt taatggaaca
      841 aatataactg gctcagtgaa aacgcctgat tatactgggc cagttacatc agaatttttc
      901 ccccttgact tttttgtgtc tcaaaataca accatccaca cagattattt gaacctgata
      961 gtcaatgaaa aagtgaaggc caatgcaatg accaatgtca cttatggtgg gggagtgcat
     1021 ttagagccca accaccaatc aagcgccccc cttctggctg cttctgcaac tattggtatc
     1081 agtacctatt tggcaggcac tttttttggc aagaaaatcc tgcgagaacg tgatgaaaga
     1141 cttcaacatt caagatcatc gagctattcc atagtttcag gcactttttg ggataataaa
     1201 catgacatag aggcaaaagg cgatacaaaa ttcgaacata gccattcatt acagtaaaga
     1261 atagcctaag tctcctccat gtaatatatt gcaatgaaaa aaataaaacg gagtttttca
     1321 tggtatttaa atcaaggtta gttggcatta ttttattgtg cttttcaagt attactggat
     1381 ggtgtctttc tcagtcccct gaagaagata gaatcattgt ttcaaactgc ctgtatgagc
     1441 aattaaaaga caaagccagg ttaattgcgc aatcggatca ctttagcttc attgccattc
     1501 caattgatga aaatattacc aatactctac aaaaaatgag accagtttgt ggaaattacc
     1561 ttaatgctga gccatatatc caacaaacct ccaatcgttt tctcgattcg aaaaaattat
     1621 tggataaact gaccagctac cactccatct caaccgcaaa cccatacccg attaatcatg
     1681 aagcacaagt ccatagtttg ttcgaacaaa ttgacccggc aaaaatatgg caaaccaatc
     1741 agcatttaac cagttatatc aaccgctctg ccaaatccag aacgggagta gaggctgcac
     1801 aatggtttaa acagcaattt gataccttag ctcaagatta tggaagaaaa gatgtagaga
     1861 gctacttcgt caaaaccgga aataaattta tacaaccctc agtcgtcact gtaattggaa
     1921 aagataaacc gggagaggcc attgttatag gggcacatat tgacacactg gacggcaata
     1981 tgcctggtgc cgatgatgac tctagtggaa tatccgttga acttgaaatg gcaagagtgg
     2041 tattttcatc gaactttgag ctcaatagac caatttattt tatagcttat gctgctgaag
     2101 aaagaggact tatcggctct ggatatgtgg tacaagattt tttacagaaa aaaattccgg
     2161 tgaaagcagt aatgcagtta gaccaggcag gatacagggc taacgccaag gaccaaacga
     2221 tttggctgtt aaaagattat gtagataagg gtttaactga atttacagca gaattattaa
     2281 ctcgctatgt caaaactcct gttggctata ctaagtgcgg ttatgcatgc agcgatcatg
     2341 tgaattggac caatgaaggc tttaaaacca cctatccgtc tgcaactact ttagacgatg
     2401 ataatcctta tgttcatacc tccaatgata ctttggatat tctgaatctg gaacatatgg
     2461 ttaatttcac taaattaggc ctggccttta ttgtagagct tggtttaaat tagcgatgaa
     2521 agcaatagag ctcgtgccaa tttaacggtg ctctgtaatg ggagtttatt aatgaaaaca
     2581 gaagccttac ttagctggct aaatgtagaa agcaatgaat cctatgattc tatcagaata
     2641 aagtatcaac taagacttga agccttagag aaagaagaac gtattaaaaa aatgggaggt
     2701 atcaatcctt ttgcgcctaa aatacccctt aacaacccca ggataatcac ctccaaagaa
     2761 atacaagagg catgggctgc tattgattct ctcagcaagt accaacaatt caaaggacta
     2821 gtggctcaag aagaaaattt atccactatc cctaacaaaa aaatggatag caagagagag
     2881 gaaacaaaat taacccactt tgtaagagaa cgggcacaag gccctcgggg aagacgctta
     2941 cccgcccatt tacaagctaa aattaaaaga gtctctttgg acaaaccaca cagtaagcta
     3001 attactgaag gggccgaaca acaaattaat gcaattttag acaaaaccac cttgtcagtg
     3061 agtgacttgc aatctgctgt ttacaccgca gtgcagaatt atacgaatta tcacatgaaa
     3121 tccgaaaata aaaataatcc caaatacaac agaggacaag gtgatggttt tttcagtttt
     3181 tttcgccatg gaagctttgg aatcactaca gcgaataacc tatatacttc catcaacgca
     3241 aaaaatgcta ctttagatga aaccatagaa aaattaaaag attttttagg ccattcctcc
     3301 agagcatatc atcatcattc tttcacatct tacctggctg atgcacttgc tgagaaggga
     3361 ctattaacat cccatcctgc cagccggtat aaacaagaag acgtagtgaa tcagcttgac
     3421 caatggatag cacaaaactc aactgttaat tttttaaaat gataatggca agggtagtct
     3481 gttttttact cctgaagtaa aaacaaataa gttagaatcc gccaccgaca tccgtgccaa
     3541 atctttaaat taggcacggc agctggtaca tttttactta ttcattaaat aaaacaaaaa
     3601 tttatcccca ctcaaaggct tggaaaaata ccatccttgt accatatcgc agttcattga
     3661 gcgcattaac tccagctgtt ctgctgtttc tattccttca gcaataaccg ataatttcag
     3721 attgcgcgcc atagttataa tactattaat caaacttaac tcattatgat ttgtatttac
     3781 accctggata aaaacccgat caatttttaa atttttgaac ggataggact taatatactg
     3841 caggaaagaa taacccaccc caaaatcatc caaagaaaaa tgaatgccca tgtcacttaa
     3901 tttgtttaat tgagataaaa tgaattttga atcatcaata aatgccgatt ctgtaacttc
     3961 aaaaattaga gaatctgcgg ataattttgt tcttttcaaa atgagttgca ccttatgaat
     4021 aaaatccttt tgctttaatt gtaaggtaga gatattcacc gctactttta tcttgctgcc
     4081 ggtaataaat tcccactctt tcgcttgtgt gcacacctta tccaaaatcc aataacccaa
     4141 tggaataatc ataccggtct cctcggccaa gggaataatc tgatcaggat taatttgacc
     4201 taaggttgta ttctgccaac gtagcaaggc ctccgcagcg acgaccttat tttccttcag
     4261 ctcaatgatc ggttggtagc aaatatataa ctcattacgg gtaaacgcct gatgtaattc
     4321 cgtcttaata cggatatggt tatttgcccc ctcaatcatg gtattttgaa ataccgtcca
     4381 attatttttg ccccgtatct tgctctgata catggctgta tctgcattac gcattaacgt
     4441 tttggcgtcc ttgccatgct caggatatat tgcaattcct atacttgtag ataccaatag
     4501 ctcttgtgat tcaataacaa aaggctgaga acaaatttcc cggcattttt ttgcgatact
     4561 ttcagcatct ttatcctgca tgatgttttc taaaatcatc ataaattcat caccacctaa
     4621 gcgtgcaata gtatcggttt gccgtatcat agatagaaag cgctccgata acgcttttaa
     4681 taataaatct ccgatggcat gccctaaaga atcattaatc tgtttaaatt catctaaatc
     4741 taaaaacagc accgccaatt tttgattgtt gatgtgggat tttgaaatag ctcgttccaa
     4801 tttattaact gcatagagac gattgggaag gttagttaaa ttatcaaatg ttgcctggtg
     4861 ttttaacatt tcctcgtagc ttttcttctg agtcacatcc tccataacag ccagataatg
     4921 agttatctct tcattatcat tacgaattgg agaaataatt gctgataccc aaaaatgctc
     4981 tccggatttg tttttattca gcaactcacc atgccactct tccccattgg ctaagtgttc
     5041 ccacatggtt ttataaattt catgaggagt ttggcctgac cgtaaaattc ttgtatttcc
     5101 accaaccaat tcttctttgc gataacctgt ttgctctatg acttttgcat tgacatactc
     5161 aatggttccc gttttatcag ttattatgac taaaacaggg ctttgctcta acgctcgtgt
     5221 taattttctt atagttgctt cagagcgttt ttgaagtgta atatcccgta cgatagccaa
     5281 aaccaatttc tccccagtcg cattaaaaac tgccaaacga acgtcaacag gaaaagttgt
     5341 gccatctttt ctgcggtgca tgccttctgt attaatgggg cccttttgca cattttccca
     5401 caactgattt aaactttcct gagaaaatcc cacttcaata tcccaaacat aggaattaat
     5461 taattcttcc cgactataat tcaaagacaa acaagctgct tcattaactt ctaaaaatgc
     5521 tccctgcaaa ttatggataa aaataccatc cgctacagca ttcatcagat ttcgatatcg
     5581 ttcttcactg atttttagtt gattgaatcg gtgtacttgt tccgtaatgt cttgtttaat
     5641 tgctatatgt tgggtaattc gccccaattc atcatccatc acaggaacga tgatggtttg
     5701 agcgacccaa tagctgccat ccttttttct tgagcgtatt tgccccttcc atgtattccc
     5761 tgatttaagg gtttggttta tttcttcaaa caactgagcg tcttcgaccg gtgagcgcaa
     5821 taaggacgcc actgttttat tcattgcttc acgggcatta tacaaagtga tgttctcaaa
     5881 agcgggatta acatattgaa tgacagcctc ttcattcgtt atttcgaccg agtcgccagc
     5941 tttttccaaa atagtggtca gcagcttttc ccttttttta ttcatcaatt tggctaaaga
     6001 caggtttaat aaacccagaa tatctttaaa aaaaggcatt agcatttcaa agttacaatc
     6061 aatagaatca aaccaaaaac taatacaaaa taaattatct tgatatttat caaggcaaat
     6121 atcgatacgc tgctttaatt tttcttcaca atgcttcttg agctttgtct tatatatttt
     6181 taaaaaatgc caatccgaaa ctacagctaa aaatttctcc aattcctttg gcgcatcaaa
     6241 ttttaatcca ttagatgcca gaatattaat atgactgcca tcatgatgcc aaactgcggt
     6301 gattgtattt tttaataagg gatgcttgcc aagtaatttc aatccactta agcttaaagt
     6361 atgtagggta ttttcatcat aactcaattc aatcaattgg cttattaagc ctcgttctaa
     6421 caggttaaga tggctgaaat tatctcctga agcaatatga tttaatggat gtggcttttt
     6481 actcttcctc attttatcta tcatgtgcca atttagacct acacctatca tttctgtata
     6541 ataaagctta
//
LOCUS       DACVWI010000159         6501 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.159, whole genome shotgun sequence.
ACCESSION   DACVWI010000159 DACVWI010000000
VERSION     DACVWI010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6501
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.159"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            20..1810
                     /locus_tag="JBH85_11685"
     CDS             20..1810
                     /locus_tag="JBH85_11685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAU0946864.1"
                     /translation="MNGLEKECCPKNIILTKQEESSEHIDSCCVPDDADTTDNVFAFF
                     GQLFQANLAKWTAGISPAALGSSYSTWLWQLAQSPEVLWELAFYPVFHANDCINNIIC
                     VERAAGGKDVRFKKDSWQPMPWRLYAEGFLQVEDWWRHATTRVPGLPDQVERTVSFWA
                     RQYLDALSPSNCVWSNPDLFHEAIRTGGFNLIQGSQIAMEDSLEKLTGAPPTGSEHFI
                     PGKDVAITPGRVVFQNHLIELIQYEAQTKTVYKEPILVLPAWIMKYYILDLSPHNSLV
                     KWLVRQGHTVFIISWRNPDKEDRDLGMDDYYRQGAMAAIDAVSAILPQTKINLMGYCL
                     GGTLAMITAAAMSRDRDERLNSLTLLAAQGDFTEAGELMLFVTKSQVAFLKNMMGEQG
                     YLDTKQMAGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYL
                     EQLFLNNDFAEGRYTVEGKPVAAENIQLPLFAVSTEKDHVAPWQSVYKIHLMTEGDIT
                     FVLTGGGHNAGIVSEPGHPGRSYRVHESKKGDAYLNPASWLAIAKQQEGSWWQEWHDW
                     LVQLSAKKRVPPLVMNTSLPAAPGTYVLQK"
     gene            1823..3229
                     /locus_tag="JBH85_11690"
     CDS             1823..3229
                     /locus_tag="JBH85_11690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional enoyl-CoA hydratase/phosphate
                     acetyltransferase"
                     /protein_id="HAU0946865.1"
                     /translation="MDKEFLENVTFDELTVGRQASLSKTLTQDDINLFAAMSGDVNPA
                     HMDPVFAQSDIFHGIVGHGMWSGSLISALLGTVLPGPGTIYLKQDIQFKKPVRLGDTL
                     TITIIVKDKGANKPRVIFNCKGVNQHGETVIEGLATVLAPTKKVRVARTHLPSIEIHN
                     HDRFEAIIKACRCMGAVRTAIVHPVSMSVMEAVNDAVKAGLIIPILIGPLVKMKTAAQ
                     EAGIDLSQWETIDTEHSDAAASKAAELASSGEIDAIMKGSLSTHELMGAIVPTASGLR
                     TQHRVSHAYVMDIPSYHKPLIITDAAINIAPTATDKADICQNAINLWRVLFGEDKKPK
                     VAILAAIETVNPKMQATVDASILCKMADRGQINDGILDGPLAFDNAINKEAAKEKGII
                     SLVAGDPDILLVPEIESGNILAKQLTFLGHADAAGIVLGARVPIILVSRADSLRTRLF
                     SCSLAVKLVAARKEGRIK"
     gene            3226..4383
                     /locus_tag="JBH85_11695"
     CDS             3226..4383
                     /locus_tag="JBH85_11695"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019350002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate/propionate family kinase"
                     /protein_id="HAU0946866.1"
                     /translation="MTAIKAASILVINVGSSSVKFQLFSRQLNPQLLVQGKVADIGGR
                     SSFIATDTLLNPENKQADKKILSDNCSHEEALHRIWDWIEEWSEQWQVTAVAHRIVHG
                     GTLFKNSVLVNPHVMHKLWALAPLAPLHQPHNLKAIEFIGTLKPEVLQIACFDTAFHT
                     HHKALFTEYALPQKIREQGVRRYGFHGLSYEWIVHTLRRYEPSLAEGRLIAAHLGNGA
                     SLCAIHHGVSVDTTMGMTALDGLPMGTRCGSLDAGAVTFMIRHLGLSIDEVESLLYNE
                     SGLLGLSSLSNDVKTLQDSKDAKAQFALEYFCLKAAQFMGMMAVTLGGVDAIVFTGGI
                     GENSAFVRNTILRHVTFLKPFETRVVAANEERMMALHAMSLLERKTEVGNG"
     gene            4380..5135
                     /gene="fabI"
                     /locus_tag="JBH85_11700"
     CDS             4380..5135
                     /gene="fabI"
                     /locus_tag="JBH85_11700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HAU0946867.1"
                     /translation="MKNKKGLIVGIANEYSIAWGCAKVLHEAGSELAITYQNEKTKGY
                     VQPLAEKVSSPIVMPLDVTDKAQFDALFQKIKDCWGRLDFVIHAIAFAPKTDLQGRVV
                     DCSKDGFMMAMDISCHSLIRLAKAAEPLMVDGGSIMTMSYYGAEKVVKNYNLMGPVKA
                     ALETSVRYLAMELGSKKIRVNAISPGPISTRAASGLADFDKLMEQAAKEAPLHQLVTI
                     EDIGETASFLVSNKAASITGQILYVDGGYNIKA"
     gene            complement(5176..5919)
                     /gene="phbB"
                     /locus_tag="JBH85_11705"
     CDS             complement(5176..5919)
                     /gene="phbB"
                     /locus_tag="JBH85_11705"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HAU0946868.1"
                     /translation="MNKRIALVTGGTGGIGTAICQEMQNLNYQVIACYFKHGHHELAR
                     EWQKKQSTQGFDIDIAYADISSFNDCEKLTDLVIEKYGKIDVLVNNAGITHDTSLKKM
                     TPEQWQEVINANLNSVFNMTKTALSNMLDNGYGRIITISSVNGRRGQFGQCNYAASKS
                     ALYGFTKSLAQEVAKKGITVNTVSPGYIKTEMLASMRDDILEAIVAQIPVGRIGQPEE
                     IARVVAFLADEQSGFITGANFDINGGQYM"
     gene            complement(5949..6158)
                     /locus_tag="JBH85_11710"
     CDS             complement(5949..6158)
                     /locus_tag="JBH85_11710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAU0946869.1"
                     /translation="MTNKIRGKVKWFNEGKGFGFIESSGKDYFVHFSAIQSSGFKTLP
                     EGATVLFKVGKGQKGPQAEDVELVK"
BASE COUNT         1736 a         1400 c         1491 g         1874 t
ORIGIN      
        1 aataccaggg atatcggtga tgaacggact agaaaaggaa tgctgtccca agaacattat
       61 attaactaag caggaagaat cttcagaaca tatagactct tgctgtgtac ccgatgatgc
      121 agatactaca gataatgtct ttgctttttt tggtcagtta tttcaagcaa accttgctaa
      181 atggactgcg gggataagtc ctgccgcgct aggctcttct tattccacat ggctttggca
      241 attggcacaa tccccagaag tattatggga actggccttt tatcctgttt ttcatgctaa
      301 tgattgcatt aataatatca tttgtgttga gcgtgctgcc ggtggcaaag acgtacgttt
      361 caaaaaagac agttggcagc ctatgccttg gcgtttatat gcagaaggat ttttgcaggt
      421 ggaggattgg tggcgacacg ccacaacccg tgtgccagga ttacccgacc aggtggagcg
      481 caccgtttca ttctgggcac gccaatatct tgatgccctg tccccttcca attgtgtttg
      541 gtctaaccct gatttattcc atgaagccat tcgcaccggg ggatttaatc tcattcaagg
      601 cagccaaatc gctatggaag actccttaga aaagctaacg ggcgcacctc ctacaggctc
      661 tgaacatttt atccctggca aagacgtggc gattacccca ggacgagtgg tatttcaaaa
      721 tcatttaatc gaattgattc aatacgaagc tcagactaaa accgtgtata aagagcccat
      781 actagttctc cctgcctgga ttatgaaata ctatattctc gatttatccc cccataattc
      841 cttggtgaaa tggcttgtta gacaaggcca taccgtattc atcatttcct ggcgcaatcc
      901 agataaagag gaccgtgatt taggaatgga tgattattat cgccaagggg ccatggcggc
      961 gattgatgcg gtatcagcca ttctgcctca aacaaaaatt aatctgatgg gctattgttt
     1021 aggtggcacg ctcgccatga ttacggcggc cgcgatgagt agagataggg atgaacgctt
     1081 aaatagcctc acccttcttg cagcccaagg ggattttact gaagccgggg aattaatgct
     1141 ttttgttact aaaagccaag tggctttcct taaaaacatg atgggagaac aagggtatct
     1201 tgataccaaa caaatggccg gttcctttca aatgttgcgt gcctacgatt tgatttggtc
     1261 caaaatggtt caggactaca tgcacgggat gcggcgtggg atgattgatt taaccgcttg
     1321 gaatgcggat gccacccgaa tgccttataa aatgcacagt gaataccttg aacaattgtt
     1381 cttaaacaat gattttgcag aaggtcgtta taccgtggaa ggaaagccag tggctgctga
     1441 gaatatccag ttgccacttt ttgcagtcag tactgaaaaa gatcacgtag cgccttggca
     1501 gtctgtttat aaaattcacc tgatgacgga gggtgatatt accttcgttc tcaccggcgg
     1561 cggacataat gcagggattg tgagtgaacc gggtcatccg gggcgttctt atcgggttca
     1621 tgagagcaag aaaggtgatg cttacctcaa tcctgcgagt tggcttgcga tcgcaaaaca
     1681 acaagaaggc tcctggtggc aagaatggca tgattggtta gtgcagctat cggctaaaaa
     1741 acgcgtccct ccactggtca tgaatacctc actacccgct gcaccaggta cttatgtact
     1801 gcagaaataa aagggaagaa aaatggacaa ggagtttctt gagaatgtga cttttgatga
     1861 gcttacggtg ggtcgtcagg cgagtctaag taaaacactc actcaagacg acatcaattt
     1921 atttgctgcc atgtcgggtg atgtgaatcc tgctcatatg gatccggtgt ttgcccaaag
     1981 cgatattttt catggtattg tgggtcatgg catgtggtct ggctcgctga tttctgcact
     2041 gctgggcact gttttacctg gtccaggcac catttatctt aaacaggaca ttcaatttaa
     2101 aaagccagta cgtttagggg acacgctcac catcaccatc atcgtcaagg ataagggtgc
     2161 caataagccc cgagtgattt ttaattgcaa gggcgtgaat caacacggag aaacagtcat
     2221 cgagggcttg gcaaccgtgc ttgcgccaac gaaaaaagta cgggttgcac gaactcattt
     2281 accgtctata gaaatacata accacgatcg cttcgaggcg ataatcaaag cgtgtcgctg
     2341 tatgggtgct gttcgcacgg ccattgtgca tccggttagt atgagtgtca tggaagcggt
     2401 gaacgatgcg gtaaaagctg ggctcattat tcccattttg attggccctt tggtcaaaat
     2461 gaagactgca gctcaagagg cagggattga tttatcacag tgggaaacga ttgatacgga
     2521 gcacagcgat gccgcagcaa gcaaggctgc cgaattggca tcttccggcg agattgatgc
     2581 catcatgaaa ggctcattaa gcactcatga attaatgggg gctattgtac ccactgcctc
     2641 tggcttacgc acgcaacatc gtgtgagtca cgcctacgtc atggatatcc cttcttacca
     2701 caaaccactc atcattacag atgctgcgat taatattgcc cctactgcca ccgacaaagc
     2761 ggacatttgc caaaacgcta ttaatctttg gcgagtattg tttggcgagg acaagaagcc
     2821 caaagtagct atccttgccg ccatcgaaac cgtcaaccct aagatgcaag ccactgtcga
     2881 tgcctctatt ttgtgcaaaa tggctgaccg aggacagata aatgatggca ttcttgacgg
     2941 tcccttggct tttgataatg cgattaacaa ggaggcagcc aaagaaaaag ggattatttc
     3001 tctcgtggca ggcgatccgg atattctttt ggttcctgaa atcgagtctg ggaatatttt
     3061 ggccaagcaa ttgacttttt taggtcatgc ggatgctgct ggaattgttt tgggtgctcg
     3121 tgttccaatc attctggtga gccgagcaga ctcactgcga acgcggcttt tctcctgttc
     3181 tctggctgtt aaactggtgg cagctcgaaa ggaaggacga atcaaatgac tgcaatcaaa
     3241 gcagccagta ttcttgtgat taatgtgggc tcttccagcg tcaaatttca gcttttttca
     3301 agacaattaa acccgcaact tttagttcaa gggaaggtgg ctgatattgg cggaagatct
     3361 tcctttatag ccaccgatac cctgctaaac cctgagaata agcaggctga caaaaaaata
     3421 ctttctgata attgctcgca cgaagaggct ttacaccgta tttgggactg gattgaggag
     3481 tggagtgaac agtggcaggt gactgcagtt gctcatcgca ttgtccatgg tgggaccctc
     3541 tttaaaaaca gtgtgctagt caatccacac gtcatgcata aattatgggc attagcccca
     3601 ttggctcctt tacaccaacc ccataatctc aaagccattg agttcatcgg tactctgaaa
     3661 ccagaggtac ttcaaattgc ttgttttgat acagcatttc atacccatca taaggctttg
     3721 ttcaccgagt atgcattgcc acaaaagata agggagcaag gtgttcgtcg ctatgggttt
     3781 catggattat cgtatgaatg gattgttcac accttgcggc gatatgagcc gtcattggct
     3841 gaggggcggc ttattgcggc ccatcttggc aatggagcca gtttgtgtgc catacaccat
     3901 ggagtaagtg ttgatacgac aatgggcatg acagccctgg atggattacc catgggaact
     3961 cgttgtggga gccttgatgc cggagctgtg acgtttatga tacgtcacct aggtttgtct
     4021 atcgatgagg ttgagtccct tctttacaat gaatcagggc ttcttggttt atcgagccta
     4081 agcaatgatg tcaaaacctt gcaagacagc aaagatgcaa aggctcaatt tgcattagag
     4141 tatttctgtc ttaaagctgc ccaattcatg gggatgatgg cagtaaccct gggtggggtg
     4201 gatgccatcg tgtttacggg cggtattggt gagaactcag cctttgtgcg aaacactatc
     4261 ttgcgtcatg tgacatttct taagcctttt gaaacacggg ttgttgcagc caatgaagaa
     4321 cgcatgatgg cacttcatgc catgtcgctt cttgaacgca aaacagaggt aggaaacgga
     4381 tgaagaataa aaaaggattg attgttggaa ttgccaatga gtactccatc gcctggggtt
     4441 gtgccaaagt attgcatgaa gcgggcagcg aattggcaat cacctatcaa aatgagaaaa
     4501 ccaagggtta tgtacagcct ttggctgaaa aagtgtcatc tcctattgtt atgcctttgg
     4561 acgtgacgga taaggcacaa tttgatgccc tatttcagaa aataaaagac tgctggggtc
     4621 gtcttgattt tgttatccat gcgattgcct ttgcaccaaa aactgattta caaggtcgtg
     4681 ttgtcgattg ctcgaaagat ggcttcatga tggcgatgga tatttcttgt cattcgctca
     4741 tccgattggc aaaagccgct gaaccactga tggtcgatgg agggagtatt atgaccatga
     4801 gttattatgg tgctgaaaaa gtggttaaaa attacaatct catgggacct gttaaagcgg
     4861 ctttagaaac ctctgtgcgc tatctcgcca tggaacttgg cagtaaaaag attcgagtca
     4921 atgccatttc tccagggcca ataagcactc gtgcggcctc aggtttagct gattttgata
     4981 agctgatgga acaggcggca aaggaagcgc ccttgcatca gctggttaca atagaggaca
     5041 ttggtgaaac agcctctttt ttggtatcca ataaagccgc ctccattacc ggtcagatcc
     5101 tttatgtgga tggcggttat aatatcaagg cctaataaac caaaagtaac tcctccagaa
     5161 ttgacgctta gttatttaca tgtattgccc gccattgata tcaaaattag cacccgtgat
     5221 aaagccactt tgttcatcag caagaaaagc gacgacccga gcaatttctt caggctgccc
     5281 tattcgtcca actggaattt gggcaacgat tgcttctaaa atatcatctc tcatggaggc
     5341 gagcatctcc gttttaatat aaccagggga gaccgtattc accgtgatcc ctttctttgc
     5401 gacttcttgc gcgagacttt tggtgaatcc gtagagtgct gatttactgg cagcataatt
     5461 acattgccca aattgacctc tgcgtccatt aactgaagaa atcgtgataa tacgcccata
     5521 accattatcc agcatgttgg ataatgcggt tttcgtcata ttaaaaacgc tatttaaatt
     5581 agcattaatg acttcttgcc attgttccgg tgtcattttt ttcaagctgg tatcatgggt
     5641 aatgcctgca ttattaacta gaacgtcaat tttgccgtac ttctctatca ccaaatccgt
     5701 taatttttca caatcattga aggaagaaat atccgcatag gcaatgtcga tatcaaatcc
     5761 ttgcgtggat tgttttttct gccattctct tgctaattcg tgatggccat gtttgaagta
     5821 gcaagcaatc acttgataat tgaggttttg catttcttga catatggctg ttccaatgcc
     5881 accagttcct cccgttacta aagcaattcg tttattcacc ttccttcctc cttgatttgg
     5941 ttatttaatt atttaacgag ttcaacgtcc tctgcttgcg gccctttttg tcctttgcct
     6001 actttaaaca gaacggttgc cccttcggga agggttttaa aaccgctact ttgtatggca
     6061 ctgaaatgga caaaataatc cttgccacta ctttcaataa agccaaagcc cttgccttca
     6121 ttaaaccatt ttactttacc gcgaatttta tttgtcattt tggttttttc cctgatgatt
     6181 ttagtgcttt atagtgtcat gctacatgat tctctgtgtc aatagtcagt attttagctc
     6241 agcaatcctg gattttttta ttctttctaa gtcatggggt tttaaaacca aaagacataa
     6301 tcaaaagaac tgaggagaat tattgcttgt cgcatccctt tctcaattaa ttgaatcaga
     6361 gggcttagtt tcttcttcca tctttttcaa tgaaacaact ttatcacact gaatctcaat
     6421 ggtatttatt ttacgtgttg atacacccca gcatcttatc ctttttccat ctatattcat
     6481 tgataggata tgaataatca a
//
LOCUS       DACVWI010000160         6301 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.160, whole genome shotgun sequence.
ACCESSION   DACVWI010000160 DACVWI010000000
VERSION     DACVWI010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6301
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.160"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1160)
                     /locus_tag="JBH85_11715"
     CDS             complement(<1..1160)
                     /locus_tag="JBH85_11715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HAU0946870.1"
                     /translation="MTKESEIKIPDIGGANQVDVIEILVKEGDQIEVDTPLITLESEK
                     ASMDIPSPISGTVTQILVKVGDKVSEGDLIVKAKSDTTTNISSSQEQKTEPEKQNLQT
                     RAEEQSVDTKATASTPSSKDIEISIPDIGGANDVDVIDILVKPGMEVEKDQALITLEG
                     DKATMDIPSPYAGKVIEMKIKLGDKVSQGTPILTLKTLGKSETPEIEKSQIKNISEQS
                     IKEIEKPYEELKSEAISINNLEIAESKSILISAGPAVRRLAREFGVDLSLVQGSGRKS
                     RITKEDLQNYIKVRLSEKTTSGGFSLPSNPAIDFSKFGSIETKPLNKIKKLTGTNVHR
                     SWITIPHVTQFDEADITDLEAFRKSESESAKNQDYKLTLLAFVCSVVCKALHA"
     gene            complement(1218..3899)
                     /gene="aceE"
                     /locus_tag="JBH85_11720"
     CDS             complement(1218..3899)
                     /gene="aceE"
                     /locus_tag="JBH85_11720"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HAU0946871.1"
                     /translation="MLGNYFMTNETNLDLDPIETREWLDALQAVLFNDGPERTAFLLQ
                     QLLNKANAEGVKLTSSINTPYRNTIKPHEEKQMPPDEGIGKRINALIRWNAVAMVLRA
                     GKYAPELGGHIASYASASTLYETGFNYFFKGQKGENGGDLLYIQGHSAPGIYARAFLE
                     GRLTEKQLEKFRQEVEVDGLSSYPHPWLMNDFWQFPTVSMGLGPLQAIYQARFLKYLE
                     NRGLIKAEGRKVWAFLGDGEMDEPESVGALSIAAREKLDNLIFVVNCNLQRLDGPVRG
                     NGKIIQELEGLFRGAGWNVIKVIWGGRWDPLFARDNQGWLQKRMEECLDGDYQSYKAN
                     DGSYVRQHFFNQYPELKKMVENMSDEEIWRLNRGGHDPQKVYAAYARAVEHKGTPTVI
                     LAKTIKGYGMGAAGEGQNITHQQKKMTIDQLKAFRDRFNIPISDDKIADIPFYKPDDD
                     SPEIKYIKKQREALGGYLPHRSTEVEQLKIPDLGEFSSITKGLGDREISTTMAFVRIL
                     SVLLKNKDINSRIVPIVPDECRTFGMEGLFRQIGIYSPVGQLYTPVDHEQVMYYREAV
                     DGQILEEGINEAGAFCSWIAAATSYSSNKLAMIPFYIYYSMFGFQRIGDLAWAAGDMQ
                     ARGFLLGGTAGRTTLAGEGLQHQDGHSHVLASTIPNCISYDPTYAYELAVIIQNGLHR
                     MYEKQENVFYYITIMNENYSHPDMPAGVEEGIIKGMYLLKENKKKSKNHVQLMGCGTI
                     LREVIKAAEMLEEDFSITSDIWSVTSFNELRKEGLAVERYNNMHPQNKPQESYVTSQL
                     KGRRGPVIASTDYMRIYADQIRPFVPNRYITLGTDGYGRSDTRTQLRHFFEVDAKFIV
                     LAALNALVAEGSLDKTKIVDAMKRYNINQDKLDPMTH"
     gene            complement(3909..4298)
                     /locus_tag="JBH85_11725"
     CDS             complement(3909..4298)
                     /locus_tag="JBH85_11725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAU0946872.1"
                     /translation="MNTAFRLLFCLIILELSACATLKSKITHHKTLSQCQQTCFQQLN
                     YCKQNCTDNCRDCSTKVNHFAKENYLEYLHEVKIQGGYITRGLQSYRDPLQCRKVTCN
                     CSADFNACNQGCSGVIQKRLQPVPYCS"
     gene            complement(4337..5116)
                     /locus_tag="JBH85_11730"
     CDS             complement(4337..5116)
                     /locus_tag="JBH85_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946873.1"
                     /translation="MKKCVRINQMKLLVIVLCLLSERFLIHSVSYQRFSWFNNYCLFL
                     KKTIDKNKCFSNPWATLIAIILPIVFLTFLVYFSLQSILFGLFGLILSLFIFYYCLGP
                     QNAFYPILKKQANQTETDAIGEYFAEVNSQLFAVVFWYIIAGPIAALTYRLITLCKEI
                     NFISTQANQITNILEWIPARITALLFLLVGNFQRGFHLFAQYVLTYPDSNDKILRGCG
                     LQAVRINDTEEVPMAAAENLVEHATIVLLVFIALFTLVAWL"
     gene            complement(5094..6266)
                     /locus_tag="JBH85_11735"
     CDS             complement(5094..6266)
                     /locus_tag="JBH85_11735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HAU0946874.1"
                     /translation="MHDGSVFYTIFLIFAGAAFFSTLVLYTKQSLLVAYITLGAILGP
                     WGFKLVSDVTVVKQIGDIGIVFLLFLLGLHLQPQNLIHMLRKVTWIAIVSSILFAALA
                     YGIGRWFGLTVTESLILGGAMMFSSTIIGLKLLPTTILHHQHTGEVMISVLLMQDVIA
                     IVLLILLNSAHQDGNLSISDFILVIIALPALCLFSFLFERYILIKLLARFDRTQEYVF
                     LLSIGWCLGISVLAQTIGLSEDIGAFIAGVALASSPISLFIAESLKPLRDFFLVMFFF
                     SIGATFNFGFGAQVVIPAVILATLILIIKPLLFYILLARSGEKKQVAKEVGIRLGQGS
                     EFSLLVASIALSTNLISEVASNLIQATTILTFIVSSYLVVLKYPTPIALSEKMRKD"
BASE COUNT         1883 a         1278 c         1136 g         2004 t
ORIGIN      
        1 gcatggagag ccttacaaac tacgctgcaa acaaatgcta acagggttaa tttgtaatct
       61 tgatttttag cgctctctga ttctgatttt ctaaacgctt ccaagtctgt aatatctgct
      121 tcgtcaaatt gagtgacatg tggaatggtt atccaggagc gatgtacgtt tgttccagta
      181 agttttttaa ttttatttaa aggctttgtt tcaattgaac caaatttact gaaatcgatg
      241 gctggatttg acggtaagct gaagccacca gacgtagttt tttcacttaa acgtactttg
      301 atataatttt gcagatcttc ttttgtaata cgagattttc tcccacttcc ctgaaccaaa
      361 gataaatcga ctccaaactc tcttgccaac cttcttacgg ctggacctgc agatattaag
      421 atactttttg attcagctat ctcaaggtta ttaattgata ttgcttcgga ttttagttct
      481 tcatatggct tctctatttc ctttatagat tgttctgaga tatttttaat ctggcttttt
      541 tcgatttcag gtgtctcaga ttttcctagg gtttttagag ttagaatagg agtaccttga
      601 gatactttat cccctaattt aattttcatt tcgatgactt tacctgcata gggcgaagga
      661 atatccatcg ttgctttatc accctctaat gtaattaatg cctgatcctt ttctacttcc
      721 atccctggtt tgactaaaat atcaattaca tcaacgtcat ttgcaccacc aatatccggg
      781 atagatattt caatatcttt ggaactaggt gtagatgcag ttgcctttgt atcaacagat
      841 tgctcttctg ctctggtttg caaattctgt ttttctggtt cagtcttttg ttcttgagaa
      901 ctggaaatat ttgtcgttgt atctgacttg gctttgacaa tgagatcacc ttcggatact
      961 ttgtcaccga ctttaacgag aatttgcgtt accgttccag atattggaga agggatgtcc
     1021 atgcttgcct tctcagactc aagcgtaatc aatggtgtat ctacttcgat ctgatcaccc
     1081 tctttcacta aaatctcaat gacatcaact tgattagcgc caccgatatc aggaatttta
     1141 atttcacttt cttttgtcat attttcctca gcactcagtt aaaccggaac tatcttctgt
     1201 tctgattaat tgtttaacta atgggtcatt ggatccaatt tgtcttgatt aatattgtaa
     1261 cgtttcatgg catcgacaat ttttgtttta tcaagactac cttcagctac aagtgcattt
     1321 aatgccgcca acactataaa ttttgcatca acttcaaaga aatgacgtag ttgtgtacgg
     1381 gtatcacttc tgccgtaacc gtctgtacct agggtaatat agcgattagg aacaaaaggc
     1441 ctgatctgat ctgcataaat acgcatatag tcagttgagg caataacagg tccacgacgt
     1501 ccttttaatt gagatgtcac ataactttcc tgaggcttat tttgggggtg catgttattg
     1561 tatcgctcta cagccaaacc ttctttacgt aactcattga agctagttac actccagata
     1621 tccgatgtaa ttgaaaaatc ctcttccagc atctctgcgg ctttgataac ttcacgcaaa
     1681 atagtaccgc atcccattag ttggacatgg ttttttgatt ttttcttatt ttcttttaag
     1741 agatacattc ctttgataat accttcctct actcctgcag gcatatcggg atgagagtag
     1801 ttttcattca taatagtaat gtaataaaac acgttttcct gtttttcata catacggtgc
     1861 aatccatttt ggatgataac tgctaattca taggcgtatg tgggatcata agaaatacaa
     1921 ttaggtattg ttgatgctaa gacatgacta tgtccatctt ggtgttgcaa tccttctcct
     1981 gccaacgttg ttcgtccagc ggttccacca agtagaaatc ctctcgcttg catatctcct
     2041 gccgcccatg ctaaatcacc aatgcgttgg aaaccaaaca tagagtaata aatgtaaaat
     2101 ggaatcattg ccagcttatt tgaactgtaa gaggttgcgg cagcaatcca tgaacaaaac
     2161 gccccagctt cattaatacc ttcttcaaga atctgcccgt caactgcttc tcggtaatac
     2221 atcacttgct catgatctac aggagtataa agttgaccta cgggagaata aattccaatt
     2281 tgtctgaata atccctccat accgaatgtt ctgcattcat ctggtactat ggggactatt
     2341 ctggaattaa tatctttatt tttgagtaga actgaaagaa ttcgcacaaa tgccatagta
     2401 gtcgagattt ctctatctcc taatcccttg gtaatactgg aaaattctcc taaatcaggt
     2461 atttttaact gttctacttc agttgaacgg tggggcaaat aaccgcccaa ggcttccctt
     2521 tgctttttta tatacttgat ttcgggactg tcgtcatcgg gtttatagaa aggaatatca
     2581 gcaattttgt catcgctgat tggaatatta aatcgatctc tgaaagcttt tagttgatct
     2641 atggtcattt ttttctgctg atgagtaatg ttttgtccct caccagccgc tcccatcccg
     2701 tagcccttga tggtttttgc aaggataact gttggagttc ccttgtgttc aactgctctg
     2761 gcataagctg catatacttt ttgaggatca tggccaccac gatttaatcg ccaaatttcc
     2821 tcatcagaca tattttcaac cattttcttt aattctggat attgattaaa gaaatgttgt
     2881 cttacatacg atccatcgtt cgctttgtaa gattgataat ctccatccag acattcttcc
     2941 atccttttct gtagccagcc ttgattatca cgggcaaata atggatccca acggcctccc
     3001 cagatgacct taataacgtt ccatccagct cctcgaaata ggccttcaag ttcttgaatg
     3061 attttaccgt taccacgaac aggcccatca agtctttgta aattgcaatt aactacaaaa
     3121 atgagattat ccagcttttc tcgtgctgcg atactgagtg ccccgactga ttcaggctca
     3181 tccatctcgc catcacccaa aaatgcccat actttcctac cctcagcttt gatcagtccc
     3241 cggttctcaa gatattttag aaagcgagct tgatagatag cttgcaaagg acctaagccc
     3301 atggatacag tgggaaattg ccaaaaatcg ttcattagcc aagggtgtgg gtaggaagat
     3361 aaaccatcta cctctacttc ttgccgaaat ttttcaagtt gtttctctgt taatcggcct
     3421 tcaagaaatg ctctggcata aatgcctgga gccgagtggc cttgaatata aagcaagtct
     3481 cctccatttt cgcctttttg tcctttaaaa aaatagttaa atccagtttc atataacgtt
     3541 gatgcagatg cataagaagc gatgtggccg ccaagctctg gcgcgtattt acctgcccta
     3601 agtaccattg caacagcgtt ccatctaatt aatgcattga tgcgctttcc aattccctca
     3661 tcgggaggca tttgtttttc ttcgtgaggt tttatagtgt ttctgtaggg agtattaatt
     3721 gagctggtta gtttaacccc ctcggcgttc gctttattaa gaagctgctg caaaaggaat
     3781 gcagtacgct caggaccatc attaaagagt acagcttgta gggcatccag ccattcacga
     3841 gtttctattg gatccagatc taaatttgtt tcattggtca tgaaatagtt ccccaacaat
     3901 caataatttt atgaacagta tggtacgggt tgtaatcttt tctgaattac accagaacaa
     3961 ccttgattac atgcattaaa atccgcagag caattacaag ttactttgcg gcattgtagt
     4021 ggatcacggt aagattgcaa cccgcgagta atatatccac cttggatttt gacttcgtga
     4081 aggtattcca gataattttc tttggcgaaa tggtttactt tcgtagaaca atctcggcag
     4141 ttgtctgtgc aattttgttt acagtaatta agctgctgaa aacaagtttg ttggcattgg
     4201 cttaaggttt tatgatgggt aattttactt tttagtgtgg cacaagctga aagctccaat
     4261 attataaggc aaaaaagtaa acggaatgca gtgttcatga ttcaagtccc acattaattt
     4321 attgtgaaat agaacattat agccaagcta ctaacgtaaa taatgcaata aaaaccaaca
     4381 acactattgt ggcatgttct acaagatttt cagcagcagc cattggtact tcttcagtat
     4441 cattgatacg aactgcttgc aaaccacacc ctctcagtat tttatcattt gagtcaggat
     4501 aagttagaac atattgagcg aatagatgaa aacctcgttg aaaatttcca actaacaaaa
     4561 acagcaaggc ggtgattctg gctggtatcc attcgagaat gttagtaatt tgatttgcct
     4621 gagtacttat aaaattaatt tctttacata aagtgattaa tctgtatgtt aaagctgcta
     4681 ttggcccagc gatgatgtac cagaatacaa cagcaaataa ttggctgtta acctcagcga
     4741 aatattctcc aattgcatct gtttcagttt gattagcctg tttcttcaaa attgggtaaa
     4801 aagcattttg cggccccaga cagtagtaaa aaataaacag gctaagaatt aggccaaata
     4861 aaccaaacag aatactttgt agtgaaaaat aaacaagaaa tgtgagaaaa acaatgggca
     4921 atatgatagc tatcaaggta gcccaaggat tagaaaaaca tttattttta tcgatggttt
     4981 ttttaagaaa tagacagtag ttattaaacc aggaaaatcg ctgataggac actgaatgga
     5041 ttaaaaaccg ttcactgagc aagcataata ctattaccag taatttcatt tgattaatcc
     5101 ttacgcattt tttcagataa agctataggt gttggatatt tcaatacaac aagatacgat
     5161 gaaacgataa aagttaaaat agtagttgcc tggattaaat tggaggcgac ttctgaaatc
     5221 aggtttgtac tcaaggcgat gctcgcaacc aataaagaaa actcactccc ctgccccaag
     5281 cgaattccta cttcttttgc cacttgtttt ttctcaccag aacgggcaag caatatataa
     5341 aatagcaacg gcttaataat cagtatcaat gtcgctaata tcaccgctgg gataactacc
     5401 tgagctccaa atccaaaatt aaaagtagca cctatcgaaa aaaagaacat tacaaggaaa
     5461 aaatctctta atggctttaa actttcagca atgaacaatg aaattgggct tgatgccaaa
     5521 gctactcctg ctataaaagc gccaatatct tctgataagc ctattgtttg tgctaaaacg
     5581 gatatcccca aacaccatcc tatggagagt agaaaaacgt attcctgagt tctatcaaaa
     5641 cgtgccagca gttttatcag gatgtatctt tcaaataaaa aagagaacaa gcacagggcc
     5701 ggtagcgcga taataaccag gatgaaatca ctgattgaca ggttcccatc ctgatgggca
     5761 ctattaagta atatcaaaag cactatagct ataacgtcct gcattaggag tacgctaatc
     5821 atgacttcac cagtatgctg gtgatgtaaa atggttgttg gtaataattt caagccaata
     5881 atagtacttg aaaacatcat ggctccgccc aatatcaatg actcagtcac tgtgaggcca
     5941 aaccatctgc caattccgta ggcaagtgca gcaaacagaa ttgagcttac gattgcaatc
     6001 caggttactt ttcttagcat atgaatcaaa ttctggggct gtaaatgcaa acctaataag
     6061 aaaagcaaga atactattcc gatgtcacct atctgcttga caaccgtcac atcggataca
     6121 agtttgaatc cccaaggacc taagatagca ccaagtgtta tataagcaac caataatgac
     6181 tgtttggtgt acaataccaa agtagaaaaa aaagcagctc cagcaaatat caaaaatata
     6241 gtgtaaaata cagagccatc atgcattgat tgaatacctc ttaagaaaag gtagttaaaa
     6301 t
//
LOCUS       DACVWI010000161         6205 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.161, whole genome shotgun sequence.
ACCESSION   DACVWI010000161 DACVWI010000000
VERSION     DACVWI010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6205
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.161"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..967
                     /locus_tag="JBH85_11740"
     CDS             <1..967
                     /locus_tag="JBH85_11740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946875.1"
                     /translation="KIDFWQNYNKGFKMLSFGNRYHLSDTSKQTKHLFHYPIDPQHAE
                     QFINWHKTQNINVSTGLIAACQIVFYKLSRQNKIPIILIHSGREGGEYKSTLGLFSEY
                     KRINLTLNENSQFIDCIHSIEEQLLKTAPYQKCSHLIKDSGLKGSSLSFGQYLTLALN
                     KMFMLKHFKESKLHSIIIDYYLKYLSRLLSFKKNISMKQRLNQLFKLDMSLQKPERLR
                     VLVSVTPSFFTKERPDMSFANLDYSYPNHFGCMDRPIGNRTLWIYFSKNQDGEYQISI
                     NAPLTIECKNKIGSGLSQFITTFVENNNCNIAELIQAMEDSSIAS"
     gene            complement(970..1371)
                     /locus_tag="JBH85_11745"
     CDS             complement(970..1371)
                     /locus_tag="JBH85_11745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HAU0946876.1"
                     /translation="MKSLRMAGVLFLFLFSFVSIHVYAAPNTGASNAEMKDVCQLAGG
                     TFTSTIEGNWACCWDNWGCYGCVQGVCKMKCHTQRCRRANGQSAVLQPGEVKIKGKFG
                     TDIVVPKVSTQPSSSNPKQIKNNNTTVNQAQ"
     gene            1370..1522
                     /locus_tag="JBH85_11750"
     CDS             1370..1522
                     /locus_tag="JBH85_11750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946877.1"
                     /translation="MIHLLGIVLSAPAKKPNFFVKNCFQFVHLAYLNSLIKNIFCLDL
                     GAFRKP"
     gene            complement(1601..2554)
                     /locus_tag="JBH85_11755"
     CDS             complement(1601..2554)
                     /locus_tag="JBH85_11755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAU0946878.1"
                     /translation="MTSISEWWMWLGFLAFVLIMLFVDLFVFGGGKAHRVSTKEALSW
                     TILWFTLAIIFNFLLWWYLVENFTFSVANEKALEFFTGYLIEKSLSFDNIFVFLILFE
                     YFAIPAKYQHRVLIYGVIGAIVMRLILILLGIWIVNQFHWILYIFGFFLMITGIKMFI
                     FADKKPELAKNPILHWMRSHLRITQELHGERFFLRKNQLVYVTPLFMVLVLIEISDLI
                     FAVDSIPAIFAITNDPFIVFTSNIFAILGLRALYFLLVNMHKRFYFLKYGLAFILVFV
                     GFKMLIAPWFKIPIFIALGIVMATLVFCILFSIWHRKNEVT"
     gene            complement(2669..4531)
                     /locus_tag="JBH85_11760"
     CDS             complement(2669..4531)
                     /locus_tag="JBH85_11760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmL"
                     /protein_id="HAU0946879.1"
                     /translation="MPKHLFYGVFLILLSMKAYSQDAVSRDIAKRTESIEKKGIVYHN
                     VIDCDYKISPEISHIDSNIILNWAEYAAILSFNFNFSSIEDQLNQLHSCYTEKGWGQM
                     QNALHKSNNIETIKAEKLKVKGYKDGEAQIIEALDNRWKIILPLKVVYENDKKRVTHF
                     LNAYLTIGWKNKDSLGIMQMIAIPRLAPLAQKVTPADEVIKSMGIILAERKKASLDSA
                     RKITDSFFVFLFSNHGECSKGNLALSNRASQRAAIIQPMPNLNPTHNLVRMQSFDMPE
                     SAKTPYLALSQQKSLVNDSDSNKSTLSDFGNKSRKLYPNWLSQIGLHSSKLQLNSLIT
                     RINPLPLWRAFSQYQQSIRDKSDNIEAINKQKPILSAQIEGEPQFIEVKENQWDIKLP
                     IKIVYQKDDERITQRLDVNLALDQKMINHLTVKNKSLDSNRVLQSLKSILASSSLQLS
                     PQLFLGSQNIQLKQPEQSKPKETVSCHYKIPEETIKTDKNIILQWAEHAATQSFAFDF
                     TSIESQLNKLQSCYTENGWIEFNSAMMKSGNIEAIKMQRLTMTSEVNGVAEFIETREN
                     HWIIALPLKVTYKNDTMRVSQLLNIQLTVGRKTNGEFGVIQLIATLDPSSPPPS"
     gene            4841..5368
                     /locus_tag="JBH85_11765"
     CDS             4841..5368
                     /locus_tag="JBH85_11765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HAU0946880.1"
                     /translation="MASKLRRYIMNTTSLSLTPLLRHSVGFERFNDLFESMRNADDST
                     YAYPAYDIEKHGEDSYTITMAVPGFQESDLNIMVQNDQLTVSGRIQEKETKESEYLHR
                     SIVTRAFEQTFRLADHMQVTGAEIKNGLLSIGLIREIPEEAKPRIIPIKSISDQESNK
                     KGKTLEPESKKKISN"
     gene            5507..6073
                     /locus_tag="JBH85_11770"
     CDS             5507..6073
                     /locus_tag="JBH85_11770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HAU0946881.1"
                     /translation="MEVTTMDIKKLAPWNWFKEEEAQNKSVPLSTTGQSCISPLSQLH
                     QEIDRIFDNVLRSVGISNLDIEKTPSNSAQNLLLKPCIDIAATDKEYTITVEVPGVEE
                     DHIKLELSDNTLIIKGEKKHESEKKDKDIYRIERAYGSFQRVLSLPEDANQEDIKAQI
                     KNGVLTITMPRKEVSKPKGKLIDIKKAS"
BASE COUNT         2105 a         1162 c         1049 g         1889 t
ORIGIN      
        1 taaaattgat ttttggcaaa actataataa aggctttaaa atgctgagtt tcggcaatag
       61 atatcattta tccgatacct caaaacaaac aaagcactta tttcattacc ctattgatcc
      121 tcaacacgcc gaacaattta taaattggca taaaacccaa aatatcaatg tcagtactgg
      181 attgattgcc gcatgccaaa ttgttttcta caaactaagc cgccaaaata aaataccgat
      241 cattttaatt cacagtggta gagaaggtgg ggaatataaa tcaaccctgg gtttgttctc
      301 ggaatataaa aggataaatc ttaccttaaa tgagaatagc caatttattg attgtattca
      361 ttcaattgaa gagcaactct taaaaacagc cccctatcaa aaatgttctc atctcatcaa
      421 agacagtggc ttgaaaggtt cgagcttatc ctttggtcaa tatttgactt tggcgttaaa
      481 taagatgttt atgctgaaac actttaaaga aagtaagctc cattccatta tcattgacta
      541 ttacctgaaa tatttaagtc gcctgctatc cttcaaaaaa aacatttcaa tgaaacaacg
      601 actaaatcaa ctatttaaat tggatatgtc attgcaaaaa ccggaaagat taagagttct
      661 cgtcagcgta acccccagct tttttaccaa agaacgccct gatatgagtt ttgctaatct
      721 tgattacagc tatcctaatc attttggatg tatggatagg ccgataggaa atcgaacgct
      781 ttggatttat ttctccaaaa atcaggatgg tgaatatcaa atttccatta atgcgccatt
      841 aacaatagaa tgtaaaaata aaatcggaag tggtcttagc cagtttatta caacttttgt
      901 agagaataat aattgtaata ttgctgaatt aattcaagca atggaggatt cctccattgc
      961 ttcctgattt tactgagcct ggttaaccgt agtattatta ttttttattt gtttagggtt
     1021 tgatgatgaa ggctgagttg aaactttggg taccacaata tccgttccaa atttgccttt
     1081 tatcttgacc tcacctggct gcaatacagc agattggcca ttggctctac gacaacgctg
     1141 ggtatgacat ttcatcttac aaactccctg gacacatcca tagcatcccc agttatccca
     1201 acagcaagcc caattgcctt cgattgttga ggtaaaagtt ccccctgcca actggcagac
     1261 atctttcatt tcagcattcg atgcccccgt attcggcgca gcataaacat gaattgatac
     1321 aaaactaaaa agaaagagga aaagcacccc tgccatcctt aaagatttca tgattcacct
     1381 ccttggaatc gtactatcag cacctgcgaa aaaacccaat ttctttgtta aaaattgctt
     1441 tcaatttgtt catttagctt atctaaactc cctcattaaa aacatttttt gccttgacct
     1501 tggggctttt cgtaagccct aactatttaa ttatggcaaa acctcataat tgttcaagtt
     1561 ttaaacaaaa agaggtcttg aaacactgaa aagcatccac tcaggttact tcattttttc
     1621 tatgccaaat actgaataga atacaaaaaa ccaaagttgc cataacaata cccagagcaa
     1681 tgaaaatcgg tatcttaaac caaggtgcga taagcatctt aaagcccacg aatactaaaa
     1741 taaaagcaag cccatatttg agaaaataaa atcgtttgtg catattcaca agcagaaaat
     1801 ataaagcgcg taatcctaaa attgcaaata tattagaagt gaatacaata aaaggatcat
     1861 tggttatggc aaaaatcgct ggaatgctat ccacagcgaa aatcagatca ctgatttcaa
     1921 taagaaccaa caccataaaa agaggcgtta cgtagacaag ttgatttttc ctgagaaaaa
     1981 atcgctcacc atgtaactcc tgggtaattc gcaaatggct tcgcatccaa tgtagtatgg
     2041 ggttttttgc gagctctggt ttcttatcag caaaaatgaa catcttgatt cccgttatca
     2101 tcagaaaaaa tccaaaaata taaagaatcc aatgaaattg attcactatc catatcccta
     2161 ataaaataag aatcagacgc ataacgatgg cacctatcac accatagatt agaacacgat
     2221 gttgatattt agccggtatt gcaaaatact caaagagaat aagaaaaaca aaaatattat
     2281 caaacgataa agacttctct atcagataac ccgtaaaaaa ttcaagggct ttttcattgg
     2341 ccactgaaaa agtaaaattc tcaacaagat accaccatag aagaaagttg aaaataatag
     2401 ccagagtgaa ccacaatatg gtccaggata aagcttcttt tgtggaaacg cgatgagctt
     2461 ttcctccccc aaacacaaac aaatcaacaa acagcataat gagcacaaat gctaaaaaac
     2521 ctaaccacat ccaccattca ctgattgaag tcattaattt ctaccatgtc ttttctatgg
     2581 tttttatacc acattgatat gttttcatta tagtcatagt attagaaatt atgcgcttca
     2641 aaaaatattt atattcattt gaaaaaacct aggaaggagg aggagaagaa ggatccaaag
     2701 tagcgatcaa ttgaataacc ccaaactcac cattggtttt cctgcctaca gttaattgaa
     2761 tattcagtaa ttgagaaact cgcatggtat cgtttttata agtgactttt aagggcaatg
     2821 ctataatcca atggttctct ctggtttcaa tgaactctgc taccccatta acttcactag
     2881 tcatagtgag tctttgcatt ttaattgcct cgatattccc tgatttcatc atggcagaat
     2941 taaactcaat ccatccgttt tctgtataac atgattgtaa tttatttagc tgcgactcaa
     3001 tagaagtaaa atcaaaagca aaagattgtg ttgcggcgtg ttcagcccat tgtaaaataa
     3061 tatttttatc tgtttttata gtttcttcag ggattttata gtgacaagaa accgtttctt
     3121 ttggctttga ttgctccggt tgtttgagtt gaatgttttg agagccgagg aacaattgag
     3181 gtgatagctg aagagaagat gaggccagta tcgattttaa agattgtaac accctgttag
     3241 agtcaaggct cttattcttt accgtcaagt gatttatcat cttttgatct aaagctaaat
     3301 taacatcaag gcgttgagtg attctctcat cgtctttttg ataaacaatt tttataggta
     3361 atttaatatc ccattgattt tctttaacct ctataaactg gggctctcct tctatctgag
     3421 cacttaaaat cggcttttgc ttattgattg cctcaatatt atctgattta tctcttatgg
     3481 attgttgata ttgagaaaaa gcacgccata agggcaaggg attaattcga gtaatcaatg
     3541 aattaagttg taatttagaa gaatgcaaac cgatctggct taaccagttt ggatagagtt
     3601 ttcgactttt gttgccaaaa tcactcagag tgcttttgtt agaatcagaa tcgttaacaa
     3661 gggatttctg ttgggataaa gcaagatatg gagtttttgc agattcaggc atatcaaatg
     3721 attgcattct cacaagatta tgagtgggat ttaagtttgg cattggttga ataattgccg
     3781 ctctttgcga agccctgtta ctcaaagcaa gatttccttt agaacattct ccatgatttg
     3841 aaaataaaaa cacaaaaaaa gaatctgtta tttttcttgc actatctaaa ctggcctttt
     3901 ttctctcagc cagtattatg cccatacttt taattacctc atcagctggc gtcaccttct
     3961 gagctagtgg cgccagacga ggaatagcaa tcatttgcat aatccccaaa ctatctttat
     4021 ttttccagcc tatggtcaga taggcattaa gaaaatgtgt cactcttttt ttatcattct
     4081 cataaacaac ttttaagggc aatataattt tccatcgatt atccaaagcc tctattattt
     4141 gagcctcccc atctttatag ccctttactt ttaatttttc tgctttaatg gtttctatat
     4201 tatttgattt atgtaaagca ttttgcattt gcccccaccc cttttcagta tagcaagagt
     4261 gcaattgatt taattggtcc tcaatagacg aaaaattgaa attaaaagac agaatagccg
     4321 catattcagc ccaatttaaa atgatattcg aatcaatatg agaaatttca ggtgagattt
     4381 tataatcaca atcaataaca ttgtgataga caataccctt tttttcaatg gattcggttc
     4441 gctttgcaat atctctgcta acagcatcct gagagtaggc tttcatactc aataaaataa
     4501 gaaatacacc atagaagaga tgttttggca taaaaagatt ccttattctg tatctacaaa
     4561 tcccttacga acgtgaaaat ttatcggata atttaattta ttctactgtt taatagtttg
     4621 gaggtaacta gttaattttt caaatatttt actattctaa tttcgaccta tggaaagaat
     4681 tgctattcag cacatgtttt ctttttagac tataaaaatc tgtcattttt ctacttgaaa
     4741 ttttattaat tgaccctatt taaacataca actacatagg gttttacact tcaattgtga
     4801 gacgtggagc agccagtagg gtgctcggtt aatattaatc ttggcctcaa agttaaggag
     4861 atatattatg aacactacct cattatcact aaccccgtta ctacggcatt ccgttggttt
     4921 tgaacgattc aatgatttgt ttgaatcgat gcgaaatgcc gatgattcaa cctatgccta
     4981 tccggcctat gacattgaga aacatggaga agacagttat acgatcacaa tggctgtccc
     5041 aggatttcag gagagtgatc tgaacatcat ggtacaaaat gatcagttaa cggttagtgg
     5101 ccgcattcaa gaaaaagaaa ccaaggagtc tgaatactta caccgcagca ttgtgacgcg
     5161 tgcttttgaa caaacctttc gacttgcaga tcacatgcaa gtaacaggcg ctgaaataaa
     5221 aaatgggcta ttgtctattg gcttgattcg tgaaataccg gaagaagcga aaccacgcat
     5281 cattccaatc aagagtattt ctgatcaaga aagcaataaa aaaggcaaaa ccctcgaacc
     5341 ggaaagcaag aaaaaaattt ccaattaaaa taatgtgccg ggggatatgg aaaatccggc
     5401 acggatttta gatagaatag ccagatttcg cctggcaatg attaatttga tgttaaccag
     5461 ataagtctaa taatagcaat aactcaattg acttaaccca gatttaatgg aggttacgac
     5521 tatggacatt aaaaaacttg ctccctggaa ttggtttaaa gaggaagaag ctcaaaataa
     5581 gagcgtaccg cttagtacca ctggacaaag ctgcatttct cctctgagcc aactgcatca
     5641 agaaatagat agaatatttg ataatgtctt aagaagcgtt gggatttcta atctggatat
     5701 agaaaaaaca ccctctaact cagcccaaaa tctgttgctt aaaccctgta tcgatattgc
     5761 agcaactgat aaggaatata ccatcacagt agaagtgcct ggcgtggaag aagatcatat
     5821 taagttggaa ttaagcgata acacattgat catcaagggc gaaaaaaaac atgagtcaga
     5881 aaaaaaagac aaagacatct atagaatcga acgcgcttat ggctcatttc aacgcgtgtt
     5941 atcacttcca gaagacgcta atcaagaaga catcaaagct cagataaaaa atggggttct
     6001 caccattaca atgccacgta aggaggtatc caaacccaaa ggtaaattaa tagacattaa
     6061 aaaagcaagc tgatttattg ccagaaatct atgagcaatg tgcccatata agtatcctct
     6121 ttaattcaat agaaagaggg ggccaaggga aaagttagag ttggataaaa atctactctg
     6181 acctcagagg tttctgtaca tcttt
//
LOCUS       DACVWI010000162         6181 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.162, whole genome shotgun sequence.
ACCESSION   DACVWI010000162 DACVWI010000000
VERSION     DACVWI010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.162"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(417..641)
                     /locus_tag="JBH85_11775"
     CDS             complement(417..641)
                     /locus_tag="JBH85_11775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019215222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946882.1"
                     /translation="MVFPTKRPATELGNEVALHKTSEDVSPESHQLISYALFKTIKAV
                     LAAQGFKEKNFVLTRESRQDKMTECVDFTG"
     gene            complement(689..869)
                     /locus_tag="JBH85_11780"
                     /pseudo
     CDS             complement(689..869)
                     /locus_tag="JBH85_11780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006871145.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            935..1738
                     /locus_tag="JBH85_11785"
     CDS             935..1738
                     /locus_tag="JBH85_11785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAU0946883.1"
                     /translation="MRKYSLRQTANRYLQLDNNGSYRERKQRAYVIQKMIDDLFRIGD
                     VPKSWNNLEQEHIKKLVEHWRKYHLKDATIMRHMTIIRNYLQSIDCPIPNIDNKSLQL
                     NRQRLSGQRLDWKPNIWESFTDSTSQLIMALQTQFGLTFSETFHIKPGIHIKEQKLWI
                     TRDIAFNSADRMIPIRNEVQKQILSDLNQLTNGISLIHFLGYKQIRSDWHNTLAKHDL
                     PAKKSWRYLYAKQMYEYLLPLLGNYQTYLLLHDEMGIKSRNTLWSYLHE"
     gene            1731..2630
                     /locus_tag="JBH85_11790"
     CDS             1731..2630
                     /locus_tag="JBH85_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAU0946884.1"
                     /translation="MSKSKLKNALYSINGCLKDLKGYSYASKADMRHILNRCIKDLHE
                     HGLMVAHIKGLKPKHIHVLVEHWKNQGKNPATIKNYMAKLRKVSVLLNKPELVKPSND
                     HYQISRRSYAPTYNKAIKDVDFSKCNDPMIRLSLEAQYLFGLRREESMKLVISEAWQG
                     NHLVIKPSWTKGGIGRTLDIISNEQRQWLEKAFRQIPHNQSLIPKGKTYKQHLRRYQT
                     ETEKMGLKNCHGLRHAYAQRRYHELTSQLSPDNKPFKCPIEGGIPSKHLPENQKEIDR
                     KAREIISLEMGHSRIAIVRVYLG"
     gene            complement(2611..3150)
                     /locus_tag="JBH85_11795"
     CDS             complement(2611..3150)
                     /locus_tag="JBH85_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019234847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HAU0946885.1"
                     /translation="MNMNNENRFHFKPVSKTQENLVLDWISQPHINEWLHGDGLSNTI
                     KDIHEFLNDGEPWATHWIAYDNEIPFAYLITSEIEKSEEYPDGAVTLDLFICRLDYIG
                     KGLSVKMIHEFILSQFSDAKIVLIDPEIANERAVHVYKKAGFEIIGEFIASWHPVPHY
                     KMQLCIEMLKTKGVSLSRP"
     gene            complement(3275..4141)
                     /locus_tag="JBH85_11800"
     CDS             complement(3275..4141)
                     /locus_tag="JBH85_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019234846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HAU0946886.1"
                     /translation="MDKVKINIHLVEKLITEQFPQWQSLTIHPVAQSGWDNRTFHLGE
                     EMVIRLPSDKQYEPQIEKEYQWLPWLSKQLSFQITQPIALGKPSPAYPWHWSINRWIE
                     GESASRQNIHDIKCFAETLGNCLNELQSLDATGGPQAGAHNFYRGGSLKAYDHEMRLA
                     IPKIKNAHEQSLAVSLWQDALSSEWRLSPVWVHGDIAVGNILVHSGRLQAIIDFGQIA
                     IGDPACDLVIAWNFFSSEERGVFKNAVQLDNDTWIRALGWAFWKTLCWPIKGTDVKEV
                     LHEIYKDYNALK"
     gene            complement(4153..5184)
                     /locus_tag="JBH85_11805"
     CDS             complement(4153..5184)
                     /locus_tag="JBH85_11805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019234845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946887.1"
                     /translation="MITLLPHNPAWIAAFSIEKQQLLQLGIKNITQVEHIGSTAISGI
                     YAKPVIDILIGVKSLSEFTSEDIQKIESLGYRYNQVFETVFPHRRYFQKDNEYGERTH
                     QIHLVNYPSSWYAKHLLFRDYLRVYPGIAKEYEALKLNLSKIHDNTIEYANAKSELCQ
                     AIGKKAFLHFGVNKPIIETSRLIAFIPQVACHEDYAIMLSNLEFIQCYGVSYNEGQAL
                     NRLESDMTHYNQYGFAPWMWYDKETHGFVGRAGLKTFVLNEKEEVELTYQIAQIYWGK
                     GLAFEMGQASLDYAEKHLNLASTICFTAHSNYSSLRVMEKLGFKFEFDFEHAGITHKL
                     HRKSTIKKQ"
     gene            5279..6139
                     /locus_tag="JBH85_11810"
     CDS             5279..6139
                     /locus_tag="JBH85_11810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006869157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAU0946888.1"
                     /translation="MIVIKKLDELYIDELSSYLNHYQETTMFIRNNLYYSGITYQDEP
                     FHGEYYGSFENNQLNGVLAHYWNGNVMMQAENFTALSALVEKFKLKRTRLIAGILGED
                     SQANVVIDKLDLQSSLFAINYQEKLFSLNLEKMITPQVIHSYSCTLKPVQDCEMDVIK
                     EWLIAYHIEALGDDANNPKLEESIINEIQDKQLSQNRWVLFVNNAPLSLCGFNAHLPD
                     IVQLGPVYTPPSLRNKGFARAAVYLCLKQAAMKKVKRAILFTNDNSAIRAYKALGFQE
                     IGKYRLALLK"
BASE COUNT         2017 a         1278 c         1033 g         1853 t
ORIGIN      
        1 attttttatt ttggaatctt tatgatattt aatatgatag gattccatgc ctgcataggc
       61 gtttatttct gtgaagaaaa aaataacagt aagaataacc ttaaaaaggc tcattttttc
      121 tattttagac agtctgatat gcttcatgcg agtcatgccc ccttattttt ttgatattcc
      181 aataaaaatt ttcatgtgcc ccagttctat aaagttaata ttaatccttc ttctgcgtac
      241 atataatccc tccaagttta gactacacaa aacaaatttt tgaggggcaa tgaacgtaag
      301 tctgattcag agtatccttt gacaatatat aacccaatca ttaatgcatc gtattctact
      361 cctctgttct gcgtcactgc aaaaatgtgc agtgacgcag aaaaccaacc ttgattttac
      421 ccagtaaaat caacacattc agtcattttg tcctggcgcg attcacgcgt caggacaaaa
      481 ttcttctcct taaacccttg cgcagcaagc accgctttga tagttttaaa taaagcataa
      541 ctgatgagct ggtgcgattc cggcgaaacg tcttctgacg tcttatgcaa cgccacttca
      601 ttccctaact ctgtggctgg acgtttagtc gggaaaacca tctaggaatc tctgtcatcc
      661 ggcagggcaa ctccctcggg agtttaagtc aatttatttc aatttgacca tggacttgtg
      721 ataaggccca ttgtcttgtc atttttatta atcaactaat aaggagaaaa caccgacaca
      781 aaaaactgct gtaaacaggc gagatcgttt gccatataac gattgttttg cccccctact
      841 tcgagcttac ggcttttgcc gggtttcatc tttgagtgag ccgctcgacc aacactaaac
      901 cagagacagg gcaaatgaat tttcggattg gacgatgaga aaatattcct tacgacaaac
      961 agccaaccgt tatttacaac ttgataataa cggcagctac agagagagaa aacaacgggc
     1021 ttacgtcatt caaaaaatga tagatgattt atttcgtatt ggtgatgtac ctaaatcatg
     1081 gaataacttg gaacaagagc atatcaaaaa actggttgag cattggagaa aataccatct
     1141 gaaagatgca accatcatgc gtcacatgac catcattaga aactatttac agagtatcga
     1201 ttgcccaata cctaatatag ataacaaatc attgcaatta aaccgtcaaa gactatcagg
     1261 ccaacgctta gactggaagc ccaatatctg ggaatcattc actgatagta cctctcaatt
     1321 aatcatggca ttgcaaacac aattcggatt aacttttagt gaaacattcc acatcaaacc
     1381 cggtatccat atcaaagaac aaaaactctg gattacccgt gatatcgcat ttaactctgc
     1441 tgacaggatg attcccatca gaaatgaagt gcaaaaacaa attctgtctg atttaaacca
     1501 actaactaat ggtatcagcc tgatacactt tttgggctat aaacaaatcc ggtcagattg
     1561 gcacaatacc cttgcaaaac atgacttacc agcaaaaaaa tcctggcgtt atctttatgc
     1621 caagcaaatg tatgaatatc tgctgccact tctaggtaac taccaaacct acttgctcct
     1681 acacgatgaa atgggcatta aatctcgaaa cacactatgg tcatacctgc atgagtaaat
     1741 caaaactaaa aaacgcactt tattcgataa atggatgtct aaaggatctc aaaggatact
     1801 cctacgccag caaggcagac atgcgtcata ttcttaatcg ttgtattaaa gatctgcacg
     1861 aacatgggtt aatggtcgcg catatcaaag gtttaaaacc caaacatatt catgtcttag
     1921 ttgagcactg gaaaaatcag ggtaaaaacc ctgccaccat caaaaattac atggctaaat
     1981 tacggaaggt gtccgtccta ctaaataaac cagagctcgt caaaccaagc aatgatcatt
     2041 atcaaattag tcggcgcagt tatgctccaa cctataataa agccattaaa gatgtcgatt
     2101 tttccaaatg caatgaccca atgatacgct tatcgctaga agcgcagtat ctttttggtc
     2161 tgcggcgtga agaatcaatg aaactggtca ttagtgaagc ctggcaagga aatcatttag
     2221 tcatcaagcc cagctggacc aaaggcggta tagggagaac tcttgatatt attagtaatg
     2281 aacaaagaca atggttagag aaagcctttc gtcaaattcc acacaatcaa tcattaatcc
     2341 ccaaaggtaa aacctataaa cagcatctaa gacgatacca aactgagaca gaaaagatgg
     2401 gattaaaaaa ctgccatggc ttacgccacg cctatgccca aaggcgttat catgaactca
     2461 ccagtcaatt atctccagac aataaaccat ttaaatgccc tattgaagga ggcatcccat
     2521 cgaaacattt acctgaaaat caaaaagaaa tagatcgcaa agcccgggaa attataagcc
     2581 ttgagatggg ccattctcgt atcgctatag tcagggtcta cttaggctga ccccttttgt
     2641 ttttagcatt tcaatacaca attgcatttt atagtgtggc acaggatgcc atgaagctat
     2701 aaattcccca atgatttcaa aaccagcttt tttataaaca tgaaccgcac gctcattagc
     2761 gatctcagga tctataagca ctattttggc atcagaaaat tgacttaaga taaattcatg
     2821 aatcatcttt acggacaatc ccttaccgat ataatccaat ctgcaaatga ataaatctag
     2881 tgtaactgca ccatcaggat attcttctga tttctctatt tcagaagtaa ttaaataagc
     2941 gaaggggatt tcattatcat aggctatcca atgagtagcc cacggttccc catcgttcaa
     3001 aaattcatga atgtctttta ttgtattact taaaccatct ccatgaagcc attcattaat
     3061 atgtggctga ctaatccaat caagaacaag gttttcttgt gttttactca ctggtttaaa
     3121 atgaaatctg ttctcattat tcatgttcat aattgattaa actcaaatag ttgggataaa
     3181 actttgactt gtacttctgt tattcacgaa tatttataat gccaacgctg catttatatt
     3241 cccaaacctt aatcattgaa tacttccggc atgtttattt aagcgcatta taatccttat
     3301 aaatttcatg caaaacctct tttacatcag tgcctttaat tggccaacat aaggttttcc
     3361 aaaatgccca tcctaaagct cgtatccagg tatcattatc cagttgaact gcatttttaa
     3421 acacaccccg ttcttcactg gaaaaaaaat tccatgctat caccaaatca catgctggat
     3481 cgcctatagc aatctggcca aaatctataa tcgcttgcaa tcttccacta tgtaccaaaa
     3541 tatttccaac cgctatatct ccgtgaaccc aaacaggact caagcgccat tcagaagaaa
     3601 gtgcatcttg ccataatgat actgcaagac tttgttcatg agcgttttta attttaggaa
     3661 ttgcaagtcg catttcatga tcataggcct tcaatgaacc tccccgataa aaattatgtg
     3721 caccagcctg aggcccacct gtagcatcta aagattgaag ttcgtttaaa cagttaccca
     3781 atgtttccgc aaaacacttt atatcatgaa tattctgtct tgaagcagat tccccttcaa
     3841 tccagcgatt gatactccaa tgccatggat aagctggtga tggttttcct agtgcaatag
     3901 gttgcgtgat ttgaaatgag agctgtttgg agagccatgg caaccattga tattcttttt
     3961 ctatttgtgg ctcatactgc ttatcgctag gcaaacgaat caccatttcc tcacctaagt
     4021 gaaacgttcg attatcccaa ccactttgag caactggatg aatagtcagt gattgccatt
     4081 gtggaaattg ctcagtaatc agtttttcga ctaagtgaat gttaattttg actttatcca
     4141 ttaaggcggc ctctattgct tctttattgt agattttcga tgcaacttgt gcgtgattcc
     4201 agcatgctca aaatcaaact caaatttaaa acctaatttt tccataactc gcaatgatga
     4261 ataattactg tgtgctgtaa aacaaatagt actggccaaa tttaaatgct tttcagcata
     4321 atccaatgat gcttgcccca tttcaaacgc taaacctttt ccccagtaga tttgggctat
     4381 ttgataagtt aactcaactt cttctttttc atttaataca aatgtcttta atccagctct
     4441 cccaacaaag ccatgggttt ccttgtcata ccacatccag ggagcaaaac catattgatt
     4501 gtaatgcgtc atatccgatt ccaaacgatt taaagcctgg ccttcattgt atgaaacacc
     4561 ataacattga ataaactcaa gatttgaaag cattattgca tagtcttcgt gacaagctac
     4621 ttggggaata aatgcaataa gccgagaggt ttctatgatt ggtttattaa ctccaaaatg
     4681 caaaaaagct ttcttaccaa tagcctgaca caattcactc ttggcattgg catattcaat
     4741 cgtattgtca tggattttgc tcaaattgag cttaagtgct tcatactctt tagcaatacc
     4801 ggggtaaacg cgcaaataat cgcgaaacaa cagatgcttc gcataccaag aagatggata
     4861 attaactaaa tgaatctgat gcgtgcgctc accatattca ttatcttttt ggaaataacg
     4921 ccggtgtgga aaaactgttt caaaaacttg attataccga taacccaagg attcaatttt
     4981 ttggatatcc tcagaagtaa attcactcaa agacttaaca ccaattaaaa tatcaatcac
     5041 tggttttgca taaatgccag aaatagctgt actgccaata tgctcaactt gggttatatt
     5101 cttgataccc aattgcaata actgttgttt ttcaatgcta aatgctgcta tccacgcagg
     5161 attatgaggg agtaaggtaa tcatatgcta tgttttgtat ttaataacaa ccaatattgg
     5221 gctatcttag catatgtctt aaaagtgcat taaaaatatt catcttaccg aggaaaaaat
     5281 gattgtgata aaaaagctag acgaattgta tatagatgaa ctgtcatcct atctcaatca
     5341 ttatcaagaa acgactatgt tcattaggaa caatttgtat tactcaggta taacttacca
     5401 agatgagcca tttcacggag agtattatgg ttccttcgag aacaaccaac ttaatggagt
     5461 tttagctcat tattggaatg gtaatgtgat gatgcaggct gaaaatttta ctgcgttatc
     5521 agcattagtt gaaaaattta aacttaaaag gacaaggtta attgccggaa tactaggtga
     5581 agactctcaa gccaatgttg tcattgataa gctggactta caatcatccc tattcgctat
     5641 taattatcag gaaaaattat tctcacttaa tcttgaaaaa atgattacac ctcaagtaat
     5701 tcattcatat agctgcacac tcaaaccagt gcaggattgt gaaatggatg tcatcaaaga
     5761 atggcttatc gcctatcata tagaagcact tggagacgat gctaacaatc ccaaacttga
     5821 agaatccatt attaatgaaa ttcaagataa acagcttagt caaaatcgtt gggttttatt
     5881 tgtaaataat gcaccccttt cactgtgtgg attcaatgcc catttacctg atattgtgca
     5941 gctaggtccg gtatataccc ctccctcttt aagaaataaa ggttttgcca gggccgctgt
     6001 gtatctttgt ttaaagcaag ctgctatgaa gaaagtcaaa agagctattt tgttcaccaa
     6061 tgataattct gctatacgcg cttataaagc ccttggcttt caagaaattg gaaaatatcg
     6121 attggcctta ttaaaataaa tattttcaat ttttcattag ttcgatcact agaccaccat
     6181 g
//
LOCUS       DACVWI010000163         6172 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.163, whole genome shotgun sequence.
ACCESSION   DACVWI010000163 DACVWI010000000
VERSION     DACVWI010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6172
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.163"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(287..2638)
                     /locus_tag="JBH85_11815"
     CDS             complement(287..2638)
                     /locus_tag="JBH85_11815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraM recognition domain-containing protein"
                     /protein_id="HAU0946889.1"
                     /translation="MMRGIDSRHELDPTLLLRDTRTFTQRLADFFADPTNISIVLISL
                     AAVSYYFSEAATFLLIMGGIFFLYSYTRKQKLPFRLPQISRAKDYNDLKPGINKPNIA
                     RGITFFGNDRKTGEELWFANDDMRTHALIFGSTGSGKTETLVSLSYNALVQGSGFIYV
                     DGKGDNSLYAKVFSMVRSMGREDDLLLINFMTGARDIVGPQEKRLSNTLNPFCQGSSS
                     MLTQLVVSLMGSSGQSSDGDMWKGRAIAFVEALMRLLVYMRDEGAILLDANTIRNYFD
                     LQRLESIVIDKVFPRDDQESVNIETIPKLVTDPLRNYLNTLPGYNKEKKGKQVSQVLE
                     QHGFITMQLVRSFSSLADTYGHIIRTNLAEVDFKDVVLNRRILVVLLPALEKSPDELS
                     NLGKIIVSSLKAMMAAGLGEEVEGDYRDVILRKPTNAPTPYMCILDEYGYYAVQGFAV
                     VPAQARSLGFSAIFAGQDLPAFQKASKEEAASIGANTNIKICMKLEDPTETWDFFTKT
                     AGEAYVTKVDSFQTKETSIANSYMDTKSSSFEKRARVDLLDLKEQTEGEAHIFFKSKI
                     VRARMFYANPKPVKQLKINQFLKVEPPPDDYLMKLQKQLASFQSILESGDLSINKAVE
                     NEEITLISKALKESTIVEPIERGVAALIAFHGQNEPEPVEDIVEEEVEGALTIFSKLR
                     IDPNAPPILVADKEVFSEPLLPINETRNQMITIERLAGAKDKYAGTVANELIKDFQIA
                     TSYPPEERDVIDVQELTGIIRDLSAKISAEREKANKKAAEELT"
     gene            complement(2635..3777)
                     /gene="icmP"
                     /locus_tag="JBH85_11820"
     CDS             complement(2635..3777)
                     /gene="icmP"
                     /locus_tag="JBH85_11820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system coupling complex
                     protein DotM/IcmP"
                     /protein_id="HAU0946890.1"
                     /translation="MYIEMAQQQQQSGSDNSMAPVWIVILLFITAYFVWALAHQYIVS
                     FVFTINIWQARLVNLFLNNQLLANQIYLMQTLDPNTVNWDQMVTVMRAVGDYMRYPVI
                     CILVVLAFVLYNSNVTLKYRKTYDMKSLRAQEQFNWPAIMPIVKEDLVSQDVNKGPWA
                     MALTPMEFARKYNLLRKDDALLDNPVPGEEMTAGIRRGDAKRVFTMQLGPYWDGFERC
                     SPQAYALSAVFMARMNRDRDAANNILKVLDKTFVDGKPDFSVARPVMKKYQNSELVQE
                     VVAKHAYVLTVIASLLEAAREDGVVPSSEFLWLKPVDRRLWYMLNCVGRQTPYSEVAG
                     PFAHWKAEKEMGRRSLVPMIDEAIRALEIAVKEVRLTPRQMEELEP"
     gene            complement(3952..4551)
                     /gene="icmQ"
                     /locus_tag="JBH85_11825"
     CDS             complement(3952..4551)
                     /gene="icmQ"
                     /locus_tag="JBH85_11825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm secretion system protein IcmQ"
                     /protein_id="HAU0946891.1"
                     /translation="MVPISIEVMKDQLSDEQKETILKALNDAIEKGPWDKSNFLRVIG
                     KKLIAIRDRFLKRIGAASQAKLKAESHLANRIALRSGQQEIYVSLYSSDGSNLQSWEK
                     IVGSLPRQMISRPIYADEEDIKAILKTKENKQNEAYVAIYISQSDILHLSADKAPVDK
                     LGKPLLTLKDKSISLENISRFVHVSGVYRYSNGRLIKNA"
     gene            complement(4618..4980)
                     /locus_tag="JBH85_11830"
     CDS             complement(4618..4980)
                     /locus_tag="JBH85_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HAU0946892.1"
                     /translation="MGNNTDDSARNPFGFYTPPRVKEIGEPDVTDATLGSVYSEIISP
                     VKDCILTVAKAVSFNPGGKDNTDAVEVLTELNTKVERAALNQPILTTKTERMFGAAES
                     EKSSEPPSHDERGFKLSS"
     gene            complement(5080..5424)
                     /locus_tag="JBH85_11835"
     CDS             complement(5080..5424)
                     /locus_tag="JBH85_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein IcmS"
                     /protein_id="HAU0946893.1"
                     /translation="MERDISKCMAKIAASMNAKFYLNDRFVSFDEVFSETGLLPAIAK
                     RADQLCSLCLGYGLGATYDESEGALLGIRVVFDEVTPNVLRLLCMTDVMNELIQGGPS
                     RDYTPLDELMYD"
     gene            complement(5425..5685)
                     /locus_tag="JBH85_11840"
     CDS             complement(5425..5685)
                     /locus_tag="JBH85_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HAU0946894.1"
                     /translation="MAGGFSATSHWRDSARSARFFVVDARAAFPIFLFLMHIRVWTGV
                     LVLVSAIFFGIIEHYGFTVPVFLRWLRSFLAGSVRSARPWWR"
     gene            complement(5856..6068)
                     /locus_tag="JBH85_11845"
     CDS             complement(5856..6068)
                     /locus_tag="JBH85_11845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946895.1"
                     /translation="MDIHSTYKMLAKMQGNKELSSHKIAETEQAEADTVPQLKLQAEP
                     EAKPDMQNILSNMLGISSNKKHSPMD"
BASE COUNT         1914 a         1335 c         1017 g         1906 t
ORIGIN      
        1 tgccattttt ttaaataatt tatttatttc agatggggtt gactaattaa ggcaaatcaa
       61 catatgccaa attaatctat gagtaaactg ataattaccc tgttaattca gaatacaaaa
      121 agttctccca aagaggaacc acacagaata tcaacctgat agatcaaagt ttaaagaaac
      181 aacgtcactg cccggattat aaaaaactca gagtaactta catatggagc tctcttcatg
      241 cccaatagca caggaacact tctacctcca attgccgact gagtctttat gttaattcct
      301 ctgcagcctt tttattggct ttctcacgtt ctgcggaaat tttagctgat aaatctctta
      361 tgataccagt aagttcttgg acatcaatca catccctttc ttcaggagga tagctagtcg
      421 ctatttgaaa atctttgatt aattcattag ctactgtacc agcgtatttg tctttagccc
      481 ctgccaaacg ctcaatcgtt atcatttgat ttcgtgtttc attaattggt aataatggct
      541 cagagaaaac ttctttgtca gcgactaata ttggaggagc attagggtca attcgtagtt
      601 tgctgaaaat agttaatgcc ccctcaactt cttcctctac aatatcttcc acaggctcgg
      661 gttcattttg accatgaaat gcaattaaag cagcaacgcc tcgttcaatt ggctctacga
      721 tagtagattc ttttaatgcc ttactaatga gagtgatttc ttcgttctcg actgccttat
      781 tgatactcaa gtcaccactt tcaagaatgc tctggaaaga agccaattgt ttctgtagct
      841 tcattaaata atcatctggc ggcggctcta cttttaaaaa ttggttaatt ttcaattgct
      901 taaccggttt tggattggca taaaacatac gagcacgaac aattttcgat ttgaaaaata
      961 tatgcgcctc accttcggtt tgctctttta aatcaaggag atctacccga gctctctttt
     1021 caaaagaaga gcttttagta tccatatagc tgtttgctat gctggtttct ttggtttgaa
     1081 acgaatccac ttttgtaaca taagcttcgc cagctgtttt agtgaagaaa tcccaggttt
     1141 cggtaggatc ttccagtttc atacatattt taatgtttgt gtttgcacca atggaagctg
     1201 cctcttcttt ggatgctttt tggaatgcag gtaagtcttg tccagcaaaa atagcagaaa
     1261 atcctagaga acgagcttgc gcaggcacta ccgcaaatcc ttgtactgcg taataaccgt
     1321 actcatcaag aatgcacata taaggagttg gggcattcgt gggttttctt agaataacat
     1381 cacgataatc accctctact tcttcaccta aacctgccgc catcatagct tttaatgatg
     1441 aaacaataat cttgccaagg ttagataatt catccggtga tttttccaga gcgggtaata
     1501 aaaccactaa tatacgtctg ttgagtacca catctttaaa atcgacttct gctaaattgg
     1561 tacgaataat atgaccataa gtatctgcca gagatgagaa acttcttacc agctgcatgg
     1621 taataaaacc atgttgctcc aaaacttggg atacctgttt cccctttttc tctttattat
     1681 acccaggcaa ggtatttaaa tagtttctta aaggatccgt tactagtttt ggaatggttt
     1741 caatattgac gctttcttga tcatctctgg gaaaaacttt atcaattaca atagattcca
     1801 gtctttgcaa atcaaaataa tttcgaatag tattcgcatc aagaagaatt gccccttcat
     1861 cacgcatata caccaataaa cgcattaatg cttctacgaa agctatagcc cgtcccttcc
     1921 acatatcacc atcagatgat tggcctgaag atcccatcaa actgactacc aactgagtta
     1981 gcatactgga agagccttgg cagaatgggt ttagtgtatt ggaaagtctt ttttcctgcg
     2041 gaccgacaat atcgcgcgct ccagtcatga agttgattaa gagcaaatca tcttcacgcc
     2101 ccatgctcct taccatagaa aagactttag catacagaga gttatctcct ttaccatcaa
     2161 cgtagataaa cccgctcccc tgtaccaggg cattatatga cagagaaacc aaagtttctg
     2221 ttttaccact acctgttgaa ccgaaaatta acgcatgggt acgcatatca tcgttagcaa
     2281 accaaagttc ctcaccggtc tttctgtcat taccaaaaaa ggtaatacct cgagctatat
     2341 tcggtttatt aatacccggt ttcaaatcgt tgtaatcctt cgcgcgcgaa atttggggca
     2401 atcgaaatgg caacttttgc tttcgggtat agctataaag aaaaaatatg ccccccataa
     2461 tcaacaaaaa tgttgccgct tcagagaaat aatatgaaac agctgctaat gaaataagaa
     2521 caatagaaat attggtcgga tctgcaaaaa aatctgccaa ccgctgcgta aaagtacgtg
     2581 tatccctaag taaaagggtt ggatctaatt catgacgaga atcaataccc cgcatcatgg
     2641 ctctaattcc tccatttgac gtggtgttaa tctcacctct tttactgcaa tttccagagc
     2701 tctaatcgct tcatctatca ttggcaccaa agagcgtctt cccatttcct tttcagcttt
     2761 ccaatgtgcg aaaggacctg caacttcaga gtatggagtt tgcctgccta cacaattcaa
     2821 catataccat aaacgtctgt cgactggttt gagccataaa aactctgagc tgggaaccac
     2881 accatcttct cgtgctgctt caagcaaaga agcaatcact gtgagcacat aagcatgttt
     2941 ggctactact tcctgaacca actctgagtt ttggtatttt ttcattactg gccttgcaac
     3001 agaaaaatca ggtttcccat ccacaaatgt tttatctaaa actttaagga tattatttgc
     3061 tgcgtctcta tctctattca ttcttgccat aaatacggca gacaatgcgt aagcctgagg
     3121 agagcaacgt tcaaaaccat cccaataagg acccaattgc atggtaaata ctcgtttggc
     3181 atcgccacgc cgaatccccg ctgtcatctc ttcgccaggc acaggattat ccaataacgc
     3241 gtcgtccttt ctcaataaat tatattttcg cgcaaattcc atgggtgtta aagccattgc
     3301 ccaaggccct ttattgacgt cttgactaac caaatcctcc ttaactatag gcatgatggc
     3361 tggccaatta aattgttcct gagcccgcaa acttttcata tcataggttt tgcgatattt
     3421 taaagtcaca tttgagttat aaagaacaaa ggctaacact accaggatac aaataaccgg
     3481 gtaacgcata taatcaccga ccgcacgcat tacagtcacc atttgatccc aattgacagt
     3541 gttaggatca agtgtttgca tcagataaat ttgattggcc aagagttgat tatttaaaaa
     3601 caaattaact aatcttgctt gccagatatt gatagtaaat acaaaactaa caatgtactg
     3661 atgagccagt gcccaaacaa aataagcagt aataaataac agtatgacga tccatactgg
     3721 cgccatggaa ttatctgaac ctgattgctg ctgttgttgt gccatctcta tatacaatta
     3781 gttaatagat tctatatatc aagtatatac tgctcagagc tatttttgcg agattttcgt
     3841 gtactatatc aaaatatgaa tacaaggatg attaaataaa gcgtaaagac agttagagta
     3901 gaaataaatt tttaacacgc tcgaaatcat tataaggaaa accgaaacgg cctatgcatt
     3961 tttaattaga cggccattgg agtatcgata tacgccactc acatgaacaa agcggctgat
     4021 gttttccaga ctgatggatt tatctttaag cgttaataac ggtttaccta atttatctac
     4081 cggagcctta tcagcggata aatgcaagat atctgattga ctgatgtaaa ttgccacata
     4141 cgcttcattt tgtttatttt cttttgtttt taatatcgct tttatgtctt cttcatctgc
     4201 gtaaataggt cgtgaaatca tttgtcgggg caaactcccc actattttct cccaggactg
     4261 aagattgctt ccatctgagg aatataatga aacatatatt tcctgctgac cactccttaa
     4321 ggcaattcga tttgcaagat gagactctgc ttttaacttg gcctgactag cggcacctat
     4381 ccgttttaaa aaacgatctc gaattgcaat taacttttta ccaattaccc ttaagaaatt
     4441 ggatttatcc catggacctt tttcaatagc atcgtttaag gcctttagaa tggtttcttt
     4501 ttgttcatcc gagagttgat ctttcataac ttcaatactt atgggaacca agaattaggg
     4561 gaaatataaa gaaagtataa cagcatttat aaaaatcact gaaatgaaat taatctttca
     4621 agatgataat ttgaaaccac gttcatcatg gcttggtggc tcagacgatt tttcagattc
     4681 agcagcacca aacattcttt ctgtctttgt tgttaaaatc ggttgattta aggcggctct
     4741 ctctactttt gtattgagct ctgttaacac ctcaactgca tccgtgttat ctttccctcc
     4801 gggattaaag ctaacagcct ttgcaacagt caaaatgcaa tcctttaccg gtgaaataat
     4861 ttcactatag acactgccta gagtagcatc agttacatca ggttcaccta tctctttaac
     4921 acgaggtggc gtataaaaac caaatggatt tcgtgcactg tcatcagtat tattacccat
     4981 tattaccact cctgagctaa atctcttact ttacatatat caaaatatat ctttcaatat
     5041 atcttggtcc aataaaactt tctaattctt tacaaacaac taatcataca ttaactcatc
     5101 caggggagta taatcacggc ttgggccccc ttgaataagc tcattcataa catccgtcat
     5161 acataacaaa cgtaatacat tcggcgtcac ttcatcaaaa accactctaa tacctagtaa
     5221 cgccccttca gactcgtcat aagttgctcc caaaccataa cccaaacaca aggaacacaa
     5281 ttgatccgct ctcttggcaa tggccggtag caaacccgtt tctgaaaaaa cttcatcaaa
     5341 acttacaaat ctatcgttca ggtaaaattt cgcattcatg cttgctgcaa tctttgccat
     5401 acacttgcta atatctcgct ccatttatct ccaccaaggt ctagcagatc taactgaacc
     5461 agctaaaaaa cttctgagcc agcgtaaaaa aaccgggaca gtgaaaccat aatgttcaat
     5521 tatcccaaaa aaaattgcag aaactaagac caaaacacct gtccatactc ttatatgcat
     5581 tagaaataaa aatattggga atgcggccct cgcatcaact acaaaaaacc gcgcgcttct
     5641 cgctgagtca cgccagtggc tcgttgctga aaatccacct gccattttta aacctcaaaa
     5701 aatcatcctt taaaaaaagt atatacttaa aaaacagctt gtgcacgttg atacttttaa
     5761 gaaacttaaa ctaagattaa tttttatgca attgaatatt gcaaacacga aggggttaac
     5821 caaaaataga tatcctaagt gttaataccc cggacttaat ccattggaga atgcttttta
     5881 ttagatgata tccctaacat attagataaa atattttgca tatcaggttt tgcttctggt
     5941 tcagcttgaa gttttaactg tggaacagta tccgcttcag cttgctcagt ttcagcaatt
     6001 ttatgactgc ttagctcttt gttcccttgc attttagcta acattttgta ggtactgtgg
     6061 atatccatct gaaatcccct tttaacaact cttaattaag atatcacata caaattaagg
     6121 aattattaag agtttgaaaa aaatcaaaaa aattcggcac tggccgatca tt
//
LOCUS       DACVWI010000164         6080 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.164, whole genome shotgun sequence.
ACCESSION   DACVWI010000164 DACVWI010000000
VERSION     DACVWI010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6080
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.164"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            27..1157
                     /locus_tag="JBH85_11850"
     CDS             27..1157
                     /locus_tag="JBH85_11850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent ubiquitin ligase"
                     /protein_id="HAU0946896.1"
                     /translation="MVIVPIILDPEVLKVAEYVYQERLSKPYTEVGPEWEYNHKTPYA
                     TRATGTGHNLQRFITIDDQKLHRPIHGLAHTMRTLFYSQLMYEAAKRQPHPHRCADGR
                     TIADLSAQDLKKLNIAQLFFVAGRESEASYGDAYHRYHLYGAKQFEEYARKHLTHLFS
                     EKEIVLYSRCIEDRIGDRFDETAEGYLIHLSHMIDLMRCKSPVEVFIGHSRGVSGIVP
                     TLIQLFGREDGLDIMHYARSLFAATGEAVPYISSSEWPHLGIESDRVERALKIVGPLE
                     VEGQEADAKKTAQAGFSVDGCYGALVKVDTPDWYHQVKEKEDYDVDEVIALPPQITIR
                     EEPPKANESFLLSLLRHVFWCCPSNQKRDDENTDVLEKKAQL"
     gene            1210..3831
                     /gene="sidJ"
                     /locus_tag="JBH85_11855"
     CDS             1210..3831
                     /gene="sidJ"
                     /locus_tag="JBH85_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T4SS meta-effector polyglutamylase SidJ"
                     /protein_id="HAU0946897.1"
                     /translation="MFGFIKKVLDFFGVDQSEDNPSETAVETTDVSTKIKTTDTTQEE
                     SSVKTKTVVPTQPGGSVKPETIAPDQQKKHQIKTETTTSTTKQKGPKVTLMDGHVKQY
                     YFARRGETSTHDTSLPPPVKVLSGRSIPLKEIPFEATRNELVQIYLTSIDKLIKSNKL
                     NSIPSQQIASHYLFLRSLANSETDGIKKNQILSLAKPLGTYLASKEPHVWKMINELIE
                     KSEYPIIHYLKNNRAHSNFMLALIHEYHKEPLTKNQSAFVQKFRDSSVFLFPNPIYTA
                     WLAHSYDEDSSFNPMFRERLSTNFYHSTLTDNLLLRTEPKEVTLSSEHHYKKEKGPID
                     SSFRYQMSSDRLLRIQGRTLLFSTPQNDVVAVKVQKKGEPKSTLEEEFEMADYLLKHQ
                     RRLDVHSKLPQPLGQYSVKKSEILEISRGSLDFERFKTLIDDSKDLEVYVYKAPQSYF
                     TYLHDKNQDLEDLTASVKTNVHDLFVLLREGIVFPQLADIFHTHFGEDEREDKGRYQA
                     LVQLLNVLQFQLGRIDKWQKAVEYVNLRSSGLADLGDSLPITSLFTSSDFTKHYFSEL
                     LTGGYHPTFFDKSSGTANSLFTGKRRLFGNYLYLNTIAEYLLVIQLTLGSYGDKVTRD
                     MMDKPKKEAVWRELANVMFTSCAEAIHIMTGIPQSRALTLLKQRANIEKHFRQTQFWM
                     TPDYSKLDEDTLQMEQYSIYSGEPEYEFTDKLVSGVGLSVDGVHQDLGGYNRESPLRE
                     LEKLLYATVTLIEGTMQLDKEFFKQLEQVEKILSGEIKTDANSCFEAVAQLLDLARPG
                     CHFQKRLVLSYYEEAKLKYPSAPTDAYDSRFQVVARTNAAITIQRFWREARKNLSEKS
                     DIDSEKPESERTTDKRL"
     gene            4112..>6080
                     /gene="sdeB"
                     /locus_tag="JBH85_11860"
     CDS             4112..>6080
                     /gene="sdeB"
                     /locus_tag="JBH85_11860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdeB"
                     /protein_id="HAU0946898.1"
                     /translation="MPKYVEGVELTQEGMHAIFARMGHPEIKSGTIYNGVPTIDQEAL
                     DKQGFMPVLTGVGPKRDSGHWIMLIKGSGNQYHLFDPMGKISGEGYQDILATQLPKGS
                     TLSVIPNEPGLNKGLCGYWVASVGLKACSALNKDNPPNLETLGQITTDAMKDELTDNG
                     YLKITGWLKAVADKFPEGDPQPDAKALRQTTEKDLHIEIPSPVSPVKDTAPKEVSTKP
                     TAPQVAPKYSLDSKLLENDDDVLDTIKYVHKEYLGKPYPGPLKNPKAPEEGRLPPNEG
                     PDRGPHGLAHTVRTMACAEVMIEEARKAQLRGETLGKAKNGQTLADVTPEELKKILIA
                     QAFFVVGRDDERSGYDDVHKRNFYAEYHEKSEQAFRKYVEDNKLIGKIFKDQKEVDFY
                     AAIILDKNHEWDATPAHILINQGHMVDLMRTKAPAEVALERTYNTLKGTVGSKGAEVV
                     LKAHRDFFFATGAVVPLVNPEAIDDPSRGGPYENPYSGEKFVIVDDKVPASKKDLPKA
                     VNRDYKLKDNERFLTIKEYYAFPDVQQTYPGYKTRLEASSYYFPTPFAGECEQNPAKC
                     LGAIQKARSKLQTDAIKNGFQSSSEKERRQPNMDEIAAARIIQQIMANPDCIHDDHVL
                     INGQKLEEKFFRDLLAKCDMAVVGSLLNDTDI"
BASE COUNT         1992 a         1275 c         1209 g         1604 t
ORIGIN      
        1 atgctatgtt ttaatttaaa caaaaggtgg ttattgtgcc cataatttta gatccagaag
       61 tattaaaagt agcagagtat gtctatcaag agagattatc caaaccttac actgaagtag
      121 gcccggaatg ggaatacaat cataaaaccc cttatgccac tcgtgctaca ggcacagggc
      181 ataatttgca acgatttatc acgatagatg atcagaaact tcatcgcccc attcatggtt
      241 tggctcatac catgcgcact cttttttaca gtcaattaat gtatgaagcg gccaaaagac
      301 agccacaccc tcatcgatgt gctgacggac gcactattgc tgatctgagt gcgcaagacc
      361 ttaaaaagct taacatagcg caattatttt ttgtggctgg acgagaaagc gaggcctctt
      421 atggtgatgc ttatcaccga tatcatctgt atggcgctaa acaattcgaa gaatacgccc
      481 gtaaacattt gacccatctc ttttcagaaa aagaaattgt cctttattct cgatgcatcg
      541 aagatcgaat aggcgatcgg tttgatgaaa ctgctgaagg ctatctcatt cacttatcgc
      601 acatgatcga tttaatgcgc tgtaaaagcc cagtagaagt gtttatagga cattcacgcg
      661 gtgtttcagg tatcgtacca accttgattc aactatttgg tcgtgaagac ggtttagata
      721 ttatgcatta tgcacgcagc ctttttgctg ccactggcga ggctgttcct tatatcagtt
      781 catcggaatg gccccatttg ggcattgagt ctgatagagt ggaaagagcg cttaagattg
      841 taggaccgct tgaagtggaa ggtcaggaag ccgatgctaa aaaaaccgca caagctggat
      901 tttcggtgga tggctgctat ggcgctttgg tcaaagtaga cacacccgat tggtatcatc
      961 aggttaaaga aaaagaagac tatgatgtcg atgaagtgat cgctttgcca ccgcaaatca
     1021 ctataagaga agagcctccc aaggcaaatg agtctttcct gttatcactc cttagacacg
     1081 tattttggtg ttgtccttca aatcaaaaaa gagacgatga aaatacagat gtcttggaaa
     1141 aaaaggcaca actatgaaga ggttatgagg cagcttattt tataattttc gaggtcatga
     1201 ggacgcagta tgtttggttt cataaagaaa gtacttgatt tttttggtgt tgatcaatct
     1261 gaagataatc catctgagac tgcggtggaa acaaccgatg tttcaacaaa aatcaaaacc
     1321 actgacacca cccaggaaga gagttcagtc aaaaccaaaa cggttgttcc tacccaacct
     1381 gggggttctg tcaaacccga gacaatcgca cctgaccaac aaaaaaaaca ccaaataaaa
     1441 acagaaacga ctacaagcac aaccaaacaa aaaggcccca aagtaacact aatggatggt
     1501 cacgtgaaac aatattattt tgcccggcga ggtgaaacaa gcactcatga cacctctctg
     1561 ccaccacctg tgaaggtgtt aagtgggcgc tctatcccat taaaagaaat tccttttgaa
     1621 gctaccagaa atgaattagt ccagatttat ctcacttcta ttgataaact catcaaaagc
     1681 aacaaattaa actctattcc atcacaacaa atcgcctctc actatctctt tcttagatca
     1741 cttgccaact cagagactga tggaattaaa aaaaatcaaa tactgtcatt agccaagcca
     1801 ttgggcactt accttgcctc taaagagccc catgtatgga aaatgatcaa tgaactcatt
     1861 gaaaaaagtg aatacccaat tattcattat ttaaaaaata accgtgctca ttccaatttc
     1921 atgctggcat taattcatga gtatcataag gaaccattaa ccaaaaacca aagcgccttt
     1981 gtacaaaaat ttagggactc ctctgtcttt ctcttcccta acccaattta tacagcatgg
     2041 ctcgctcatt cctatgatga ggactccagc tttaatccta tgtttcgtga aagattatcc
     2101 accaactttt atcattccac tctgaccgat aatctcttgt taagaacaga acctaaggaa
     2161 gtaactcttt catcagagca tcattataaa aaggaaaaag gaccaattga ctcgtctttt
     2221 cgttatcaaa tgtcaagtga tcggttattg cgtatccagg gcagaacttt actgtttagt
     2281 accccccaaa atgatgtggt tgcagtcaaa gtacaaaaaa aaggagagcc taagtccacc
     2341 ttggaagaag aattcgaaat ggcagattat ttgctgaaac atcaacgtcg tttggatgta
     2401 cacagcaaat tgccacaacc gcttggacaa tactctgtta aaaaatcaga gattttggaa
     2461 ataagcaggg gatcattaga ttttgagcgt tttaaaacct taatagacga ctctaaagac
     2521 cttgaagtgt atgtttataa agccccccag tcttatttca cttacctaca cgataaaaat
     2581 caggatttgg aagatctgac agcttctgtt aaaacaaatg tgcacgatct ctttgttcta
     2641 ttacgcgaag gaatcgtatt tccccaatta gccgatatct tccatactca ttttggtgaa
     2701 gacgagcgcg aagacaaagg aagataccag gcattagttc aacttttgaa tgttttacag
     2761 ttccaattag ggcgcattga taaatggcaa aaagctgtgg aatacgtcaa tttgcgcagc
     2821 agtggtctgg ctgatttggg agacagtctg cccataacta gcctgttcac ttcatctgat
     2881 ttcacaaaac attatttctc tgaactgctt acaggaggat atcacccaac cttctttgac
     2941 aagtcatctg gtacagccaa ctctttattc accggcaagc gccgattatt tggtaattac
     3001 ttgtatctca ataccatagc agaatatttg ctggttattc agttaacact cggcagctat
     3061 ggggataaag tgactcgaga catgatggat aaacctaaaa aagaggcggt atggcgagaa
     3121 ttggcaaacg tcatgtttac aagttgtgca gaagccattc atatcatgac tggaatacct
     3181 caatcgcgag cactgacact actaaaacaa cgagctaata ttgaaaaaca tttcagacag
     3241 acacaattct ggatgacgcc tgattattcc aaactggatg aagatacact gcaaatggag
     3301 caatacagca tttattccgg tgagccagaa tatgaattca ctgataaatt agtctctggt
     3361 gttggattgt ccgtcgatgg tgttcatcag gacttgggtg gatataacag ggaaagccca
     3421 ttaagagaac ttgaaaaact gctctatgcc acagtaacac tgattgaagg aaccatgcaa
     3481 cttgataaag agttttttaa acaattggaa caagttgaaa aaatactttc tggtgagata
     3541 aaaactgatg ccaattcgtg ctttgaagca gttgcccaac ttctggacct tgcaaggcct
     3601 gggtgccatt ttcagaaaag attggttttg tcctactacg aagaagccaa gcttaaatat
     3661 ccctccgcac caactgacgc ctatgattca cgttttcaag tagtcgccag aaccaatgcc
     3721 gcaataacca ttcaacgatt ctggcgagaa gcacgcaaaa acttgtcaga aaaatcggat
     3781 atcgattctg aaaagccgga atccgaacgt actactgata aacgtttgtg ataaaacgaa
     3841 taccctgccc ctgactcttt gaaaccacac tattcccatg gagaagtcta taagacagaa
     3901 tagacttctt cattttctgg cttgagtttt aagagcaata agagaaaacc ccccgcttct
     3961 gttccagcta tcaactccat atgttgccta tcttttaaac acttaatact ttcttaatac
     4021 tgtagcccta taatgaaaat aaacataaga atattcacat ctattagaat cagtatttgt
     4081 acatacaaat attcgcttgg gagaaagtaa aatgcctaaa tatgtagaag gggtagagtt
     4141 aactcaagaa ggcatgcatg ctatttttgc acggatgggg catcccgaga ttaaaagcgg
     4201 tactatttat aacggagtac ctactattga tcaagaagct ctcgacaagc aaggttttat
     4261 gcctgtatta acaggggtag gacctaagag agactccggt cactggatca tgttaatcaa
     4321 aggatcaggc aaccaatacc atctctttga tccaatgggt aaaatttcag gtgaaggcta
     4381 tcaagacatt ttagccactc aattgcccaa aggctccacc ctttctgtta tccccaatga
     4441 gcccggccta aacaaggggc tatgtggcta ttgggttgct tctgttggat taaaggcatg
     4501 ttctgcactc aataaggata atcctcccaa tttagaaact ttgggtcaaa tcacaacgga
     4561 tgcaatgaag gatgaattaa ccgataatgg ttatctgaaa attaccggct ggctaaaagc
     4621 tgttgctgat aaatttccag aaggtgaccc ccaacccgat gcgaaagcat taagacaaac
     4681 cactgaaaaa gatttgcaca tagagatacc ctctcctgtt tctccagtca aagacacagc
     4741 tcctaaggaa gtttctacaa aacctactgc accacaagta gctcccaagt attctttaga
     4801 cagtaagtta ttagagaatg acgatgatgt tctagacacc ataaagtatg ttcataaaga
     4861 gtatttagga aaaccatatc ctggcccatt aaaaaatcca aaagcaccgg aagaaggacg
     4921 acttcctcca aatgaagggc ccgatcgagg acctcatggt cttgctcata cggtaagaac
     4981 aatggcttgt gccgaggtga tgatagaaga agcacgtaaa gctcaactga gaggagaaac
     5041 attaggtaaa gcaaaaaatg gtcagacttt agctgatgta acaccagaag aactgaaaaa
     5101 aattctcatc gcacaagcct tttttgtggt aggaagggat gatgagcgtt ccggctatga
     5161 tgacgtccac aagagaaatt tttacgcgga atatcatgag aaaagtgagc aagcgttcag
     5221 gaaatacgtt gaagataaca agctcatcgg caaaatattt aaagatcaaa aagaagtcga
     5281 tttctatgct gcgattattc tggataaaaa tcatgaatgg gatgccaccc cggcacatat
     5341 cctgataaat caaggccata tggtcgattt aatgaggact aaagcacctg ccgaagtcgc
     5401 attggaacgt acctacaata cactgaaagg taccgtcggt tcaaaaggtg ctgaagtggt
     5461 cctcaaggcc catcgagatt ttttctttgc cacaggcgct gttgttccct tagttaaccc
     5521 tgaagcaatt gatgacccca gtagaggtgg accttatgaa aatccttata gcggggagaa
     5581 atttgttatt gttgatgata aggtaccagc ttccaagaaa gacttaccaa aagctgtcaa
     5641 tcgtgactat aaactgaaag ataacgaacg attcctaacc ataaaggaat actacgcttt
     5701 tcctgatgtg cagcaaacct accctggtta caaaacacgt ttggaagcaa gctcttacta
     5761 tttcccaaca ccatttgcag gagaatgtga acaaaaccct gcaaaatgtc tgggagctat
     5821 ccaaaaagcc cgttcaaaac tacaaacgga tgccattaaa aatggctttc aatcaagctc
     5881 tgagaaagag agaagacaac ctaatatgga tgaaattgcg gccgcccgca ttattcaaca
     5941 aatcatggcc aatcctgatt gcatccatga cgatcatgtg ctcatcaatg gtcaaaaact
     6001 ggaagaaaaa ttcttccgtg acttgttagc gaaatgtgat atggctgttg taggctcact
     6061 gctcaatgac accgacatca
//
LOCUS       DACVWI010000165         6075 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.165, whole genome shotgun sequence.
ACCESSION   DACVWI010000165 DACVWI010000000
VERSION     DACVWI010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6075
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.165"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            6..2651
                     /locus_tag="JBH85_11865"
     CDS             6..2651
                     /locus_tag="JBH85_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946899.1"
                     /translation="MDVGQKIRILKRYLKEKSITPEDVNLNDQDLTAYAGLDMLLDYI
                     SIHHNGLFDFATLESDEKQWKQYVDILNYSATYSPGSPPALIDTSERKAQFGLQYWLN
                     TRTIEALPRDNYYTRTVTLSDEADEEFDQLITESRAKLYEIAQTFPEISSFNPANIIQ
                     VTNQISSIKEKLDTLTGNNSQITLLQKKLNVLTDLNKINQLERLNIPQDNGSNLSYCT
                     LAETIEGVTEKIPLITLAKVKEQLRHLCAQNELDLDSYSESREQYYKLGIEGILKLPK
                     HGDIKEVQREAIALNISRLMGLDTTSSTTVSYNGHPALFIPFDNINLLNEFSSGKIFK
                     VGMGLSGQSYTHYSTIKPLGEGIQADLYIKDFGHALALLYLCCDTDAIGGYCKNKALR
                     NYSNLYIFDQVITDTDKFILDSRISLQPDQFIMKHTRHGQGRNRTLIEDSSLVTKYAS
                     LMRLKELKRIITQYCDHISWLHHNRTQAIKKQLKEELAKDERVRLTEELNDVEILEKD
                     AEQIKNQILIRINKIAEVLPQTTGPVGSDVIRQCLILEKLLHNPVLYSDDGRPYKHPW
                     TTRQANTVQTINDLQNGKIQITFKFNIPEEMVDFIKRHGGGDSLTISSPKVITISKAH
                     LDSLRENMLHPEHSPELSLNTDYLDDKDLCIIKMAYRIGNRTKILNAIAEYRVLMNNE
                     QVSFHNKIECLAQTEAKIKALIELANDKGLGMHILKKFYFDAQQQLQKLINPEVLPHD
                     IGQAFAAALRLDRVSEFNKVVREAIVQNKVTDPQFTIFLTSCIKNESLAKNYKDAQKT
                     SRALLIESQRIINHLKSPIIPLIVQLGGQLHSQAELDTDGLANLENDLQLDFEKPDTE
                     SMTTMDLHQAVTKEEMIENGMTVKV"
     gene            2721..3284
                     /locus_tag="JBH85_11870"
     CDS             2721..3284
                     /locus_tag="JBH85_11870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HAU0946900.1"
                     /translation="MTMPVHERRQHFRIDDHIYFDYRILAPGEFCSDIEITNQLLGEN
                     GQKYMEAAQYFQGIDYELAELTQVMAVKEPALAHYLNLLNAKIDYLSRQMLMSSKVQL
                     RKVNISLGGMAFKTMEQIREKTNLKIILYTKPKMIPIIVDAVVVYSQYQSETHYRTAV
                     AFCNLTSEQEQLLSQHILQAQIKSRAD"
     gene            3360..3629
                     /locus_tag="JBH85_11875"
     CDS             3360..3629
                     /locus_tag="JBH85_11875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HAU0946901.1"
                     /translation="MSRTVFCCKLKQEAEGLEKQPFPGELGKKVFNEVSKQAWNMWLS
                     HQTMLINEYRLNLIEARAREFLKEEMQKYFFGEGSEKPSGYKEIK"
     gene            3641..4567
                     /locus_tag="JBH85_11880"
     CDS             3641..4567
                     /locus_tag="JBH85_11880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HAU0946902.1"
                     /translation="MFHDLLEFNEEVLDAINDKNPIVALESTIISHGMPYPDNLTTAI
                     EVENIIRRQGAIPATIAMHQGKIRVGLTQEVMEHLALQKEVIKASRRDISFVLSRKVT
                     ASTTVAATMFCAHMAKLPLFVTGGIGGVHQDVTMSFDISADLIELSNTPVTVVCSGAK
                     SILDLPKTLEVLETFGVPVIGYATDEFPAFYSRSSGIPVPQRLNSAEEVANLMSIQQK
                     LNMKNGIVVANPIPVSAELSDEEISPYIKQAHDEAKHMSGKSLTPFLLKRIAELTAGK
                     SLEANIELIKNNAFLGAEIAIAYQKKLFSKKT"
     gene            4618..4693
                     /locus_tag="JBH85_11885"
     tRNA            4618..4693
                     /locus_tag="JBH85_11885"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4651..4653,aa:Phe,seq:gaa)
     gene            complement(4736..4825)
                     /locus_tag="JBH85_11890"
                     /pseudo
     CDS             complement(4736..4825)
                     /locus_tag="JBH85_11890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652677.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            4872..6023
                     /locus_tag="JBH85_11895"
     CDS             4872..6023
                     /locus_tag="JBH85_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine kinase"
                     /protein_id="HAU0946903.1"
                     /translation="MYPFILKPKSLRFFNFVFIALALSFCLLANARAAGIERYDFGDM
                     ASKVTKAWDQDVALYVAKRFAVENSFDEKEITVKKLNAGATNHFIYLMFINNELKFVI
                     KGLGTEKEAESLFALQNYSKIPDIQNNPQAATVTLSKIINSYRVKNDSRTYFFTILEA
                     AQGKELFKIMTYELLQHKDINTLKGVFYRIGQQMAELHKTIIGSDQLITPRDLVTVIH
                     DDFHPENTFYNLETNIFSLIDNESMGDSITEPLPIIRELYGFYEVPIIRWPSEKITVD
                     LLKDADPHDIASIYYDFVLGMASVYQDPQDAKRELIEAIIDLNNMAIAFLKDRYSEPW
                     MLNPSDKHEAHIVWGKLAKVDTNPQLAELYITKLTIINNELQSLSGFKR"
BASE COUNT         2086 a         1140 c         1139 g         1710 t
ORIGIN      
        1 aggcaatgga cgttggccaa aagataagga ttttaaaacg ttatttaaaa gaaaaaagta
       61 tcacgccaga ggacgtcaat ctcaatgatc aggatctaac ggcctatgcc gggctggata
      121 tgctattgga ttatatttct atacatcaca atggattgtt tgacttcgca acattggaat
      181 ctgatgaaaa gcaatggaaa caatatgtgg atatacttaa ctattccgca acctactcac
      241 caggctctcc ccctgcttta atcgatacca gtgaacgcaa agctcaattt ggtttgcaat
      301 attggctaaa tacgagaacg attgaagcac tgccaagaga caactattat actcgtacag
      361 tcaccttatc cgatgaagca gatgaagaat ttgatcagct gattacagaa agcagagcca
      421 aattgtatga gatagcgcaa acttttccag aaatcagctc ttttaatcca gcaaatatta
      481 tccaggtaac caaccaaatc tcttcgatta aagaaaaact ggatactttg acaggcaata
      541 attctcaaat aaccctttta caaaaaaaac tcaacgtact aacagattta aacaaaatta
      601 atcaactcga gaggctcaat attccccagg acaatggttc taacttgagt tattgtacgc
      661 tagcagagac tattgaagga gttactgaga aaataccttt aataacactt gccaaagtga
      721 aagagcaatt gagacatctt tgcgctcaaa atgagcttga tttggatagt tatagtgagt
      781 ccagagaaca atattataaa cttggtatag aaggtatact caaattaccc aagcatggcg
      841 acataaaaga agtacaacgt gaagccatag cccttaatat ctcaagatta atgggtctag
      901 acactacttc ttcaacaaca gtaagctata acggtcatcc cgccttgttt attccttttg
      961 acaacatcaa tctattaaat gaattttctt caggtaaaat ttttaaagta ggcatggggt
     1021 taagcgggca aagttatacc cattactcca caattaaacc attaggtgaa ggaatccagg
     1081 cagatcttta tatcaaggat tttggccatg ctctggcatt actttattta tgttgtgata
     1141 cggatgctat aggtgggtat tgtaaaaaca aagcattaag aaactacagt aacctctata
     1201 tttttgatca ggtcattacg gacactgata aatttatcct tgattcacga attagtcttc
     1261 aacccgatca gttcattatg aaacataccc gtcatgggca agggagaaac agaaccttaa
     1321 tcgaggattc ttccctggtt accaaatacg caagccttat gcgacttaaa gagttaaaac
     1381 gcattattac ccaatactgc gatcatattt catggctgca tcataatcgt actcaagcca
     1441 ttaaaaaaca attgaaagaa gaacttgcaa aagacgaacg cgtacgatta acagaagagt
     1501 taaatgatgt tgaaattttg gaaaaagatg ctgagcaaat aaaaaaccaa attctaattc
     1561 gcatcaataa aatagccgaa gtgctacctc aaacgactgg gcccgttggc tccgatgtca
     1621 tccggcaatg tttaattctg gagaaattat tacacaatcc ggttctctac tctgatgatg
     1681 gaagacctta taaacatcca tggacgacac gacaagcgaa tacagtacaa acgattaatg
     1741 atttacaaaa tgggaagata caaattactt ttaaattcaa tattccagaa gaaatggtcg
     1801 actttatcaa acgccatggt ggtggagact ccttgactat tagctctcct aaagtgataa
     1861 cgattagcaa agcccatctg gatagcctta gggaaaatat gttgcatcct gaacattcac
     1921 ctgaattgtc tcttaatact gattatttag acgataaaga cctctgtatt ataaaaatgg
     1981 cctatcgtat aggtaataga accaaaattt taaatgctat tgcagaatac cgcgtcctta
     2041 tgaataatga acaggtaagc ttccataaca aaatagaatg tcttgcccaa actgaagcga
     2101 aaatcaaagc gctgatagaa ttggcaaatg acaaaggctt ggggatgcac attcttaaaa
     2161 aattctattt tgatgcgcag caacaactcc aaaagttaat taatccagaa gtgttgcccc
     2221 atgacattgg tcaagccttt gccgcagctc ttagactgga cagagtatca gaattcaaca
     2281 aggttgtgag agaagctatt gtccaaaata aagtgaccga ccctcaattt acaatttttt
     2341 tgacaagctg tatcaaaaac gaatctcttg ccaaaaatta taaagacgca caaaaaacaa
     2401 gcagagcctt attaatcgag tctcagcgaa ttataaatca tctaaaatcg cctataattc
     2461 ctttaattgt tcaattagga gggcaattgc attcacaggc tgaattagat acggatgggt
     2521 tagccaatct tgaaaatgac ctacagcttg attttgagaa accagataca gaatcaatga
     2581 ccactatgga tttacatcag gctgttacga aagaagaaat gattgaaaat ggaatgacag
     2641 taaaagttta atagatttct tttaaaacta tctgtaatgc agcaaatgaa aagagagatg
     2701 tttaaacttg gaataatgga gtgactatgc cagtacatga aaggcgccaa cattttcgta
     2761 ttgatgatca tatctatttt gattatcgaa ttcttgcacc gggtgaattt tgttccgata
     2821 tagaaatcac taatcagtta ctaggtgaaa atgggcaaaa gtatatggaa gcagcacaat
     2881 attttcaggg aattgattat gagcttgccg agctaactca ggtaatggca gtgaaagaac
     2941 ctgctttggc gcattacctt aatcttttga atgccaaaat tgattattta tctcgacaaa
     3001 tgttaatgtc aagtaaagtt caactacgta aagtcaacat cagcctgggc ggcatggcat
     3061 ttaaaacaat ggagcagatt agagaaaaaa ccaatctaaa aatcattctg tacacaaaac
     3121 ccaaaatgat acccattatt gttgatgctg tagtggttta tagtcaatat caaagtgaga
     3181 cgcattaccg aacagcggtg gctttctgta atttgaccag tgagcaagag cagttgcttt
     3241 cacaacatat tttacaagcc cagataaaaa gccgtgctga ctaagatgga gatgctgtag
     3301 attggaactg ttttttctag gataatgagc cttcaaatta aaataacgag gttatatcca
     3361 tgagcagaac agtattttgc tgcaaattaa agcaagaagc agaaggcttg gaaaaacaac
     3421 ccttccctgg tgaattgggt aagaaagttt ttaatgaagt atcaaagcaa gcatggaata
     3481 tgtggctttc ccatcaaacc atgttaatca acgaataccg cctgaatttg attgaagcca
     3541 gggctcgtga gtttttgaaa gaagaaatgc aaaaatattt ttttggcgaa ggttcagaaa
     3601 aaccctctgg ctataaagaa ataaaataaa ggattaattt atgtttcatg acttgttgga
     3661 atttaacgaa gaagtactgg atgctatcaa tgataaaaac ccaattgttg ctcttgagtc
     3721 gaccattatc tctcatggaa tgccctaccc tgataattta actacggcaa tagaggttga
     3781 aaatattatt cgtagacaag gcgccattcc agctactata gcgatgcacc aagggaaaat
     3841 ccgtgttggt ttaactcaag aagttatgga acatctcgcg cttcaaaaag aagtaataaa
     3901 agcctctcgc agagacattt cttttgtatt atctcgtaaa gtgactgcca gcacgacggt
     3961 agcagcaacc atgttttgtg cccatatggc taagctcccc ctatttgtca ccggaggtat
     4021 aggtggtgtt catcaagacg tgacgatgag ttttgatatt tcagctgatc ttatagagct
     4081 atccaatacg ccagttaccg tagtctgttc tggcgcaaaa tcgattctcg acttaccaaa
     4141 aacattggaa gttcttgaaa cgtttggggt gccggtcata ggttatgcca cagacgaatt
     4201 ccctgctttt tatagcagat cgagtggaat accagttcca caacgcttaa actcggccga
     4261 ggaagtagca aatctcatgt caattcaaca gaaattgaat atgaaaaatg gaatagtcgt
     4321 cgcaaacccc attccagtat cagccgaact atccgatgag gaaatcagtc catacataaa
     4381 acaggctcat gatgaagcca aacacatgag cggaaaatca ttaaccccct tcctgttaaa
     4441 acgtattgct gaattaactg cgggcaagag cctggaagct aatattgagc ttatcaaaaa
     4501 caacgctttt ctaggagcag aaattgccat agcctaccaa aaaaaattat tttcaaaaaa
     4561 aacttaatca acacttgact caaagtcgat ctcggagttt aatagcaagc cttgagtggc
     4621 cagatagctc agtcggtaga gcagaggact gaaaatcctc gtgtcggcag ttcgattctg
     4681 cctctggcca ccattagaat ttccgggtct ttcccaatta cggcgcactc cccatttaac
     4741 aacacaacac cctaacacga gttctataat catcaaagtt acgaaagcca taagctagtc
     4801 tttgagtcaa tttgatttgc aaatgcaaac aacatacaat atgatcaatt ctaattcata
     4861 gaccaattaa attgtaccca ttcatcctta aacccaaatc cttgcgattt tttaactttg
     4921 tttttattgc tttagccctt tctttctgtt tattagctaa tgcccgagca gcaggaattg
     4981 aacgctatga cttcggagat atggcctcaa aggtgactaa agcttgggat caagatgttg
     5041 cgctttatgt tgccaagcgt tttgcagtag aaaacagttt tgatgaaaag gagataactg
     5101 tcaaaaaatt aaatgcaggg gcgaccaacc attttatata tttgatgttt atcaataacg
     5161 agttgaagtt tgttatcaaa ggtctgggaa cagaaaaaga ggcagagtca ttgtttgctt
     5221 tacaaaatta ctcaaaaatt cctgatattc aaaataatcc acaagccgcg actgttacat
     5281 taagtaaaat cattaattcc tatagagtaa agaatgattc caggacttat ttcttcacaa
     5341 ttttagaagc tgctcaagga aaagagttat ttaagataat gacttatgaa ttgctacagc
     5401 ataaagatat taacacttta aaaggtgttt tttatcgaat agggcaacag atggctgaat
     5461 tacataaaac aattatcggg agtgatcaac ttatcactcc aagagattta gtgaccgtta
     5521 ttcatgatga ttttcaccct gaaaatacgt tttataatct tgaaacaaat atcttctctt
     5581 taattgataa tgaaagcatg ggtgatagta ttacagagcc tttgcccatt atcagagaat
     5641 tatatgggtt ttatgaagtt cctatcattc gctggccctc agaaaaaata actgtagatc
     5701 tcttaaagga tgctgatcct catgatatag ccagtatcta ttacgacttt gttctcggta
     5761 tggcctcggt gtatcaagac ccccaagatg caaaacgaga gttaattgaa gctattattg
     5821 atttaaataa tatggctatt gcctttctga aggatagata ttctgagcca tggatgctta
     5881 acccaagcga taaacatgaa gcacatattg tgtggggcaa gttagcaaaa gtcgacacta
     5941 atccgcagct agcagaactc tatatcacta aattaaccat tattaataat gaattgcaat
     6001 cactttcagg ctttaaacgc tagcagaggg tgagtactca ggttattccg caccctcgga
     6061 ttttaattgc tgctg
//
LOCUS       DACVWI010000166         6058 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.166, whole genome shotgun sequence.
ACCESSION   DACVWI010000166 DACVWI010000000
VERSION     DACVWI010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 6058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6058
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.166"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            134..1432
                     /locus_tag="JBH85_11900"
     CDS             134..1432
                     /locus_tag="JBH85_11900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946904.1"
                     /translation="MAHYNVQSESLNKASVSLIMPWMVWGLGCLFYFYECLLQVSPSV
                     MSNELMRDFSVTSHTLGILSGIYFYSYAAMQLPGGVLMDYFGPQRLLTLATVVCAVST
                     IAFGMTDNFFMACIARLMIGFGSAFAAVGTMKLAANWFPAQKFALLTGLMVTIGMMGA
                     IGGETPLALLIDNFGWRESMIIMGSVGLLLATLLILIARDTPKNFSPAIHQHPVEEER
                     LIPSLFTLIKNKQLWLVATYGGLMYMATPVFCGLWGVPFLMNKMLIAKSTAANFISLV
                     FVGWAIASPLWGLFSNRIGLRKPPMYIGCVGAMICSLLFIFAPITSSITMEILLFAFG
                     IFSAGFLPAFSVAKELCNKKYVATGLSFMNMMNMVGIALAQPLIGYILDKMWQGQMMG
                     TVRVYPLEAYYTALSILPIGMLVALLILPKIKETYCQSVN"
     gene            1469..2812
                     /gene="miaB"
                     /locus_tag="JBH85_11905"
     CDS             1469..2812
                     /gene="miaB"
                     /locus_tag="JBH85_11905"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HAU0946905.1"
                     /translation="MVKKLYIKTNGCQMNEYDSSKMAEVLYASHGLVKTDQVEDADVI
                     LLNTCSIREKAQEKVFSQLGQWREYKAKNPHVLIGVGGCVASQEGSDIIKRAPFVDIV
                     FGPQTLHRLPALLNERLEKNKSVVDISFPEIEKFDHLPAPRAEGPTAFVSIMEGCSKY
                     CSFCVVPYTRGEEISRPFDDVLAECYQLASQGVREINLLGQNVNDYRGIMDNGDIADL
                     ALLIHYIAAIDGIGRIRFTTSHPLAFSENLINAYAEVPELANHLHLPVQSGSDRILSL
                     MKRGYTALEFKSKIRKLRKIRPDIRLSTDIIVGFPGETDKDFQDTMDLVHEIGFDTSF
                     SFIYSPRPGTPAANLPDDTPMEIKKQRLQILQNRLLMNAARYSESMIGSKQKILVTGF
                     SKKSSQQLSGRTECNRVVNFDGPPHLIGQFIDVQISDALPNSLRGRLLEKEMQPA"
     gene            2812..3777
                     /gene="rluD"
                     /locus_tag="JBH85_11910"
     CDS             2812..3777
                     /gene="rluD"
                     /locus_tag="JBH85_11910"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HAU0946906.1"
                     /translation="MIEHIQQQLSVPRELHNQRVDSVLARLLPEYSRSLICNWIKTGA
                     VTLNNLPCKPKDKALGGDLITINVDHTIVNTDFNYCKPENIPIQIIYEDSEVIVVNKP
                     AGLVVHPGAGNKEHTLVNALLHHCPELQLLPRAGIIHRLDKDTTGLLIVAKNLISHTS
                     LIRQMQNREIKRHYLTLVHGYVISGGTIDTGFGRHPKNRLKMAVTDFGRQAVTHYNIN
                     KHYKDFTLLNVSLMTGRTHQIRVHMNYINHPVVGDQLYGGRMKFPPNADEAILSVLKQ
                     FKRQALHACSISFCHPVKNTEITLNALLPDDFELLLNTLDQHDEK"
     gene            3767..4492
                     /gene="pgeF"
                     /locus_tag="JBH85_11915"
     CDS             3767..4492
                     /gene="pgeF"
                     /locus_tag="JBH85_11915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HAU0946907.1"
                     /translation="MKNRFANWPAPKNITALSTTRLYGFSDGPYASNNLGLHVGDNQQ
                     HVFKNRQQLIELIDLPAEPIWLEQTHSTKCITVETEKTRDADAAITRLPKLPLVIMTA
                     DCLPILLCNRQGTEIAAIHAGWKGLYNGIIENTLKKLNSNRTDIIAWIGPAICNKCYE
                     VGEEVYLSFTNKYSLTRNAFEPVHSKWLADLPQIAEIVLNLEGVKSVFQSNLCTFELK
                     NEFYSYRRESQTGRIGTFIWINE"
     gene            4485..5885
                     /locus_tag="JBH85_11920"
     CDS             4485..5885
                     /locus_tag="JBH85_11920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HAU0946908.1"
                     /translation="MSKIRINNMITRIKLFIASLLVFFIPVADAAQDLTNMPSLAPVL
                     KNAMPAIVNVAVQGYLPNNMASGNADDDDGENSKQPSRIPEKGRKFESIGSGVIIDPK
                     NGIIITNDHVIRNANLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGDS
                     DKLEVGDYVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEGVENFIQTDAAINPG
                     NSGGALVNAKGELIGINTAIISPYGGNVGIGFAIPINMAKDVAQQIIKFGSIHRGLMG
                     IFVQHLTPELAQSMGYAEDFQGALVSQVNQNSPAQLAGLKSGDVIVQINDTKITQATQ
                     VKTTISLLRAGSTAKIKILRDNKPLTLDVEVTDIKKHEQKLQSNNPFLYGLALRNFEQ
                     ESPPHGNVVGVQVVGASETSAGWRAGLRPGDIIISANKTPVKDIKSLQAVAHEKGKQL
                     LVQVLRGAGALYLLII"
BASE COUNT         1886 a         1138 c         1230 g         1804 t
ORIGIN      
        1 tcgctgtgtg aataaaataa gtacattttt aatcaaagat tagaatatat ggaaatacca
       61 tctatatcct cttttttgac taataacttt catagaatct aatgattgga taaatttgga
      121 gaatttttaa ataatggctc attacaatgt acaatccgaa tcgctcaata aagcaagtgt
      181 cagcttaatt atgccctgga tggtgtgggg cttgggttgc ttattctatt tttatgaatg
      241 cttattgcaa gtatccccaa gcgtaatgag taatgaactc atgagagatt tctcggtaac
      301 aagtcatact ttagggattc tatcgggcat ttatttctat tcttatgccg ccatgcagct
      361 tcctggtggt gttctaatgg attattttgg cccacaacgt ttattaactc ttgccacagt
      421 ggtttgtgcc gtgagcacta tagcctttgg catgacagat aatttcttca tggcctgtat
      481 cgcaaggctg atgattggat ttggttccgc atttgctgct gttggcacca tgaaattggc
      541 agccaactgg tttccagcac aaaaattcgc attattgact ggcttgatgg ttaccatagg
      601 catgatgggt gcaataggtg gagaaacgcc tttggctctt ctaattgata attttggctg
      661 gcgggaaagc atgattataa tgggtagtgt tggacttctt ttggcaactt tgctcatctt
      721 gattgccaga gatactccca agaatttttc tcctgctatc catcaacatc ctgtcgagga
      781 agaacgttta atcccaagtt tattcacatt gataaaaaat aagcaacttt ggctagtagc
      841 tacctatggc gggttaatgt acatggcaac acccgtgttt tgcgggcttt ggggggttcc
      901 ttttctgatg aataaaatgc taatagcaaa atctacagca gctaatttta tctcattggt
      961 ctttgtgggt tgggcaatag ccagtccttt atggggtctg ttttcaaacc gtattggatt
     1021 acgtaagccg cctatgtata ttggatgtgt aggggcaatg atttgttctt tgctctttat
     1081 ttttgctccc atcacttctt caattactat ggaaatcctg ctgtttgcat ttggtatctt
     1141 ttccgcaggc tttttgccag ctttctcagt agccaaagaa ttatgtaata aaaaatatgt
     1201 ggcaacaggg cttagtttca tgaatatgat gaatatggtt ggaatagcgt tagcacaacc
     1261 tttaattggt tatattctgg ataaaatgtg gcaaggtcaa atgatgggga ctgtgagagt
     1321 ttatccattg gaagcttact acactgcttt gtcaatcctt ccaataggca tgttagttgc
     1381 gttactaata ttaccgaaaa tcaaagaaac ctattgccaa agtgttaatt aatgaaataa
     1441 taccgcaatt tcaatttgta gaatcaaaat ggttaaaaaa ttatatatta aaacaaatgg
     1501 ctgccaaatg aatgaatacg attcttctaa aatggcagaa gtactttacg cttcccatgg
     1561 tttggtcaaa actgatcaag tcgaggatgc cgatgttatt ttattaaaca catgctcaat
     1621 tcgagaaaaa gcacaggaaa aagttttttc tcaactgggt caatggcgag aatataaagc
     1681 caaaaaccct catgtgctca ttggagtggg aggatgcgta gcgagccagg aaggctcaga
     1741 catcataaaa agagcaccgt ttgttgatat cgtatttggg ccacagacat tacacaggct
     1801 ccctgccctg ctcaatgaaa ggcttgagaa aaataaatct gttgttgata tcagctttcc
     1861 agaaatagag aaatttgatc atttacccgc accaagagca gaaggcccta cagcttttgt
     1921 atctataatg gaaggctgta gtaaatattg cagcttctgt gtggtgccct acacccgtgg
     1981 cgaagaaatc agcagaccat ttgatgatgt attggctgag tgttatcaat tagccagtca
     2041 aggcgtcaga gagattaatt tactaggcca aaatgtgaac gattacagag gtattatgga
     2101 caatggggat atagccgatc ttgccctgtt aattcattat attgccgcta tcgatggaat
     2161 aggaagaata cgtttcacaa catcacatcc cttggcattt tctgaaaatt tgattaatgc
     2221 ctacgctgag gttccagagc ttgccaatca tttacacctt ccggtacaaa gcggatccga
     2281 tcgcatttta tcgttaatga aacgagggta cactgctttg gaatttaaat ccaaaattcg
     2341 taaattaagg aaaattcgac cagacattcg cttatctact gacattattg taggctttcc
     2401 cggagagaca gacaaagatt tccaggacac tatggatctt gtgcatgaaa tcggttttga
     2461 tacctctttc agctttatat acagcccaag accaggaact cctgcagcaa atttacctga
     2521 tgacacgcct atggagatca aaaagcaacg tttacagatt ttacaaaaca gattattaat
     2581 gaatgcagct cgttacagtg aatcaatgat aggcagcaag caaaaaattc tggttaccgg
     2641 attttccaag aaaagttcac agcaattatc tggtcgtact gaatgtaacc gtgtagttaa
     2701 ttttgatgga ccacctcatt taattggaca atttatagat gtccaaatta gtgacgcact
     2761 acctaattca ttgcgaggaa ggctgcttga aaaggagatg cagccagcct aatgattgag
     2821 catatccagc aacaattatc agtacctcgc gaattacata accaacgagt agacagcgtg
     2881 cttgccaggc tgctccctga gtattcacgc tctcttatct gtaactggat taaaacaggt
     2941 gctgttaccc ttaataatct gccttgcaaa cccaaagata aagcgctggg cggtgattta
     3001 attacgatta atgttgacca tacaatagtt aatacagatt ttaactattg taaacctgag
     3061 aacattccaa ttcagataat ctatgaagac agtgaagtaa ttgttgttaa caagccagcc
     3121 ggtcttgttg tacatccggg tgcgggaaat aaggaacata cactcgttaa tgcgctgctt
     3181 catcattgtc ccgagttgca actacttcct cgtgctggaa ttattcacag attggataaa
     3241 gataccactg gtctgctgat agtggctaaa aacctgatta gccatacttc tctcatcagg
     3301 caaatgcaaa atcgcgaaat taagcgccac tatctgacat tagttcatgg ttatgtcatt
     3361 tctggtggaa caatagatac gggttttggc aggcatccca aaaatagact aaagatggct
     3421 gtaactgact tcgggcgtca agctgttacc cattataata tcaataagca ttataaagac
     3481 tttaccttac tgaatgttag cttaatgaca ggacgcactc atcagataag agtgcatatg
     3541 aactatatta accacccagt tgtaggagat caactgtatg gaggaagaat gaagtttcct
     3601 cctaatgctg atgaggcaat actctcagtt ttaaaacaat ttaaaagaca agcactccat
     3661 gcctgttcca tttcattttg tcatcctgta aaaaatacag aaataacact gaatgcatta
     3721 ttacccgatg atttcgaact cttgttaaac actctggatc aacacgatga aaaatagatt
     3781 tgccaattgg ccggctccta aaaatattac cgctttgagt actacccgtt tgtatggttt
     3841 cagtgacgga ccctatgcga gcaacaacct tgggttgcat gttggtgata accaacagca
     3901 tgtattcaaa aacagacaac agctcattga acttattgat ctgcctgcag aaccaatctg
     3961 gctggaacaa acacatagca caaaatgcat cacggtagaa actgaaaaaa ccagagatgc
     4021 tgatgctgca attactcgtt tacctaaact ccctttagtc attatgacag cagattgcct
     4081 acccatattg ctatgcaatc gacagggaac tgaaattgcc gccattcatg ctggatggaa
     4141 agggctgtat aatggtatta ttgaaaatac actaaagaag ctaaatagca ataggacaga
     4201 tataattgcc tggataggcc ctgctatctg taataaatgt tatgaagtgg gtgaagaagt
     4261 ttacttgtct tttaccaata aatactcctt aaccaggaat gcgtttgagc ctgttcatag
     4321 caaatggtta gctgatttac ctcaaattgc agaaatagta cttaatttgg aaggggtaaa
     4381 atcagtattt cagtcaaatt tgtgtacttt tgagttaaaa aatgaattct attcctatcg
     4441 cagagaatca caaacaggta gaataggtac tttcatctgg attaatgagt aaaatcagga
     4501 ttaataatat gattacacgt ataaaattat tcatagcaag tctgcttgta tttttcatcc
     4561 cggtagccga tgcagcacaa gatcttacaa acatgcccag cttggctcct gttctgaaaa
     4621 atgctatgcc ggctattgtt aacgtggctg ttcaagggta cttgcctaat aatatggcat
     4681 ccggaaatgc agacgatgat gacggggaaa acagtaaaca gccttccaga atacctgaaa
     4741 aaggcagaaa atttgaaagt atagggtctg gagttatcat tgaccctaaa aatggcatta
     4801 ttataacgaa tgaccatgtt attcgtaacg ccaatttaat tactgtaact cttcaagatg
     4861 gcaggagatt aaaagctcgc ctgattggag gtgatagcga aacggacttg gctgttttaa
     4921 aaattgatgc taaaaatttg aaatccctgg taattggtga ttccgataag ctggaagtcg
     4981 gagattatgt tgttgctatt ggaaacccct ttggattaaa cagctttgga aatagtcaat
     5041 ctgctacgtt tggaatagtg agtgccttaa aacgcagcga tttaaatatt gaaggtgttg
     5101 aaaactttat tcaaactgac gcagctatca atcctggtaa ttcaggaggg gctttggtca
     5161 atgcaaaagg cgaattaatt ggcattaata cagccattat ttcaccctat ggaggaaatg
     5221 taggtatcgg ctttgcgatc ccaattaata tggcaaaaga tgtagcgcaa caaatcatta
     5281 aatttggctc tattcatcgt ggtttaatgg gtatatttgt tcaacattta acaccagaac
     5341 ttgcccaatc aatgggatat gccgaagatt ttcaaggggc tttagtatca caggtcaatc
     5401 aaaattcacc tgctcaattg gctggcctaa aatcaggcga tgtcattgta caaattaatg
     5461 acaccaaaat aacgcaggca acacaggtaa aaacaacgat tagtctgttg cgagctggct
     5521 ctactgctaa aattaaaatc ttgcgagata ataagccgct tacattagat gtagaagtca
     5581 cagacatcaa aaaacatgaa caaaaattac aatccaataa tccatttctc tacggattag
     5641 ccttgcgtaa ttttgaacaa gagtcaccac ctcatggtaa tgttgttgga gttcaggtag
     5701 taggtgcttc ggaaaccagt gcgggctggc gagctggctt aaggccagga gatattatca
     5761 tttctgctaa taaaacaccg gtcaaagaca ttaaatcttt acaagctgtt gcacacgaga
     5821 aagggaaaca gctattagtc caggtgctga gaggagcagg agcactctac ctgttgatca
     5881 tttaaatttt ttatccaaat aatgaaataa cgcatcttct ttctttaagc ccatctctga
     5941 gagatgggct taaattttga taaattatcc tgcttttgat aatgctggct atcaactatt
     6001 ccgcctatcc tccaaagcaa tctcttgagt gtgggaatat cacttttcaa tatatcaa
//
LOCUS       DACVWI010000167         5930 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.167, whole genome shotgun sequence.
ACCESSION   DACVWI010000167 DACVWI010000000
VERSION     DACVWI010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5930
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.167"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            3..689
                     /locus_tag="JBH85_11925"
     CDS             3..689
                     /locus_tag="JBH85_11925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003637049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HAU0946909.1"
                     /translation="MPLVLFHGWGFDNQIWQPIIPYLKPKYQIILVDLPGFGLTPMMD
                     WESFKKNLLDQLPDKFALAGWSMGGLYATRLAIEEPARVQYLINITSSPRFISDIDWP
                     GVAEEVFVNFYNNLSKDINKTLKEFISLQLNKMKFDFKIGNPPSPEGLAFGLEILGTW
                     DFREQLKQITIPTVYLFGRLDPITPVKTMAIMEKNYPNFKYVLFNRAAHMPFLSHTDL
                     FITMMDEFIK"
     gene            686..1324
                     /locus_tag="JBH85_11930"
     CDS             686..1324
                     /locus_tag="JBH85_11930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HAU0946910.1"
                     /translation="MKRYFVTGTDTDCGKTFVTNQLVNYFSNSAAIKPIASGCEYSEN
                     QLVNSDALLHQQQNHLSLEIINPWRFRLPVSPHLSAREDGASIDVHKVADYCLNLQLN
                     DIKKLFIEGAGGLMVPLNEQDTWLDFLKLTRIPVILVVGMKLGCINHTLLTQEVLEIN
                     KIKCQGWIANCLDQDMLMLDENINTLEAKLKYPLLARTNYGGKISDICLSSL"
     gene            1459..1773
                     /locus_tag="JBH85_11935"
     CDS             1459..1773
                     /locus_tag="JBH85_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HAU0946911.1"
                     /translation="MPIYEYQCTNCHHQFDLMQKVTDAPVKQCPKCYENTVTKLISPA
                     GFQLKGTGWYVTDFKNKGNGPKESTENKSGDPGINKENSSKETPAASSADSAKSTKGD
                     SE"
     gene            1770..2399
                     /locus_tag="JBH85_11940"
     CDS             1770..2399
                     /locus_tag="JBH85_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HAU0946912.1"
                     /translation="MKLISLRAYLITGLIVWLPIFVTIVVLRFIIDMLDSTLALFPKA
                     YQPEQLFGFYIPGFGVLFSLVLLLVTGIIATNFLGQRLVSRGESLLAKIPLVRSIYNA
                     VKQVIHAVLSTNSQAFRKVVLVEYPRKGLWTIAFQTGSVNPEIKEKSKEDMMSVFVPT
                     TPNPTSGFMLMIPRQDAIELNMSIDEALKLVISLGVMQSDPALAQVKTQ"
     gene            2418..4199
                     /gene="aspS"
                     /locus_tag="JBH85_11945"
     CDS             2418..4199
                     /gene="aspS"
                     /locus_tag="JBH85_11945"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HAU0946913.1"
                     /translation="MRTHYCSAVNELSLDKQITVCGWVHNRRDHGGVIFLDIRDRSGL
                     LQVVYEPENKEIFAIAEKLRSEFVVRVTGIVRKRPEGMINDKMETGRVEVIGIQLEIL
                     NQSPTPPFLPDDHQIINEDLRYKYRYIDLRRAVMQKKLTLRHKLNSCIRNYLNEQNFL
                     DIETPMLTKATPEGARDYLVPSRVHPGQFYALPQSPQLFKQLLMMSGFDKYYQIVRCF
                     RDEDLRADRQPEFTQLDIEMAFINEEDILQLIEGLLKVVFKEILNITLPDKLPRMSYK
                     EAMTRYGSDKPDLRNPLELIDIADLVKDCDFNVFASAANDNSGRVVALKLPNGCDLSR
                     KDLDNYGQFVTIYGAKGLAYIKVNDLSAGMAGLQSPILKFLSETAVQSILNRVEAQTG
                     DVIFFGADKAHVVNESMGALRNKLGHDRNLINPGWQLLWVIDWPMFELDPQSNKLQPM
                     HHPFTSPQELSAEALRSKPTQTLAKAYDIVINGYEIGGGSIRIHQPELQKTVFDLIGI
                     DEQEAHEKFGFLLDALQYGAPPHGGIALGIDRLAMLLTDSTSIRDVIAFPKTQTASCP
                     LTSAPSPAGNAQLTELGIRLAPTITTK"
     gene            4174..>5930
                     /locus_tag="JBH85_11950"
     CDS             4174..>5930
                     /locus_tag="JBH85_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel protein MscS"
                     /protein_id="HAU0946914.1"
                     /translation="MRQLLRQSNLNLSTTSFKYLWRFFLPLFLLLFSFSLFSSSVKEN
                     NATLVEYLAHEKTHLTIAINEIKQKSAPKDEQEYNEKLRQIRTILSMNKAKIESLNSF
                     SENQKKEEVNLNDQLKRLQQMPLANAEVTIQEKVGKIETLLTVNKKTTELIAETLDLA
                     KQYQLLLNDILNELKLWKANFDLKEKLKSIKAIRAKLNKELNILYENAVSSQDQKQQK
                     LTISEQIQYEANLYINNQRIAVIHQKLNVLELQKKVIKTNILLLNNLDTKALQSAIDN
                     YREVINQYSAIESSLQTILNSLTNQANLFVEPGLQKSVSLLQHDVKTELKETSNQKLI
                     LSKNLEDYQNQLKKQISTRQSLSEYNIDSWAVILKKLIDIPNLFYKYIKTLTIKVYDS
                     YTWLDTFPAIFLWTVLIFILSLFYILNHVLKTLARDKERSRFTGYLYGGILVLLQRNI
                     PHLCFFAMLSFILYFTSISYANSQLLIKLIIVWLTFRVLILIARLILLESISDSSGKD
                     VKLYYRLKWLLLFGGWTTALMTFSHLLPLSILLQDIFNRLFMLFMLTVSLVAWKSKDV
                     IPYLIRPLLKSKKRYFKNA"
BASE COUNT         1907 a          984 c         1157 g         1882 t
ORIGIN      
        1 gtatgccttt ggttctattt catggctggg gatttgataa ccaaatctgg caaccgataa
       61 ttccttatct taagcctaaa tatcagatta ttttggtcga tttgcctggt tttggattga
      121 ctccaatgat ggactgggag agttttaaaa agaatttgct tgaccaatta cctgataaat
      181 ttgcattggc agggtggtca atgggtgggc tctacgcgac acgtttagca attgaagagc
      241 ctgccagagt gcagtatttg ataaatataa cgtcttcacc tcgctttatc tctgatattg
      301 attggccggg agtagcagag gaggtatttg tcaattttta taacaattta tcgaaagata
      361 ttaataagac attaaaagag ttcatatctt tgcaactcaa taagatgaaa tttgatttta
      421 aaataggtaa tcctccatct ccagaaggct tggcgtttgg tctcgaaatt ttgggtacct
      481 gggattttag agagcagttg aagcaaataa ctatacctac tgtttactta tttggtcgac
      541 ttgatccgat tactcctgtc aagaccatgg caattatgga gaaaaattac ccgaatttta
      601 aatacgtcct cttcaacaga gcagctcaca tgccttttct gtcccatacc gatttattta
      661 ttacaatgat ggatgaattt ataaaatgaa acgatatttt gttacgggta ctgacactga
      721 ttgtggtaag acatttgtaa ccaatcaatt ggttaattat ttttcaaatt cagcagcgat
      781 aaaacccata gcaagcggat gtgagtacag tgaaaatcaa ttagtaaatt ctgatgcact
      841 tttacaccag caacagaatc atttgtcttt ggaaattatt aatccctggc gatttagatt
      901 gccagtttcg ccgcacttat cagcaaggga ggatggtgca agtattgatg tccataaagt
      961 ggctgattat tgccttaatt tgcaactgaa tgatattaag aaattattta tcgaaggagc
     1021 cgggggatta atggttcctc tgaatgagca ggatacttgg cttgattttt taaaattaac
     1081 caggatccct gttattttag ttgtgggcat gaagttgggt tgcatcaacc acactttgct
     1141 tacccaggaa gtgctcgaaa taaataaaat caaatgtcaa ggatggattg ctaattgcct
     1201 ggatcaggac atgctaatgc ttgatgaaaa tattaatact cttgaagcca aattaaaata
     1261 ccctttatta gccaggacaa actatggcgg caagatttct gatatatgtt taagctcctt
     1321 gtaattgcag taaaatttta tatcaaaaca gcactatata cctgatgtta ttgtttgttc
     1381 tgcttgcgct atacccatgg cagcaattat aatgaaaagt taaattacag atacttcgag
     1441 tttatggagt gatgctagat gccaatttat gaatatcagt gcacaaactg tcatcatcaa
     1501 tttgatttga tgcaaaaagt tacggatgcg cctgtaaaac aatgcccaaa gtgttatgaa
     1561 aatactgtaa caaaacttat ttctccggct ggatttcagt taaaggggac tggctggtat
     1621 gtcacagatt ttaaaaacaa aggaaatgga ccaaaggagt caactgagaa taaatcagga
     1681 gatcccggca tcaataaaga gaattcttct aaagaaactc ccgcagcaag ctctgcagat
     1741 agcgcaaaat cgacaaaagg tgatagcgag tgaaattaat ctccctcaga gcctatttaa
     1801 ttaccgggtt aatagtgtgg ttaccaatat ttgtaaccat tgtagtcctg cgatttatta
     1861 ttgatatgct tgatagtacc ttggctttat ttccaaaagc ttatcaacct gagcagttat
     1921 tcggtttcta tataccaggc tttggcgttt tattttcatt ggttttatta ctcgtgacag
     1981 gaattattgc aaccaatttt ttggggcaga gacttgtaag tcggggtgaa tccttattag
     2041 ctaaaatacc tctggtgcgg tcaatttata atgcagtaaa gcaagttatt catgctgttc
     2101 tatcaactaa tagccaagct tttcgtaaag ttgttttagt tgaatatccc cgtaaaggac
     2161 tttggactat cgcatttcag actggctccg ttaatcctga aattaaagag aaatccaagg
     2221 aagacatgat gtctgtattt gttccaacta cacctaaccc tacttcgggt tttatgttga
     2281 tgatacccag gcaagatgcc atcgagttga atatgagcat tgatgaagcg ttaaaattag
     2341 taatatcgtt aggcgtaatg cagtctgatc ctgcattggc acaagtaaaa actcaataaa
     2401 ctttaatagg tggttttatg cgtacacact actgttcggc cgtgaatgaa ttaagcttgg
     2461 ataagcaaat cacagtttgt gggtgggtgc ataatagacg agatcatggc ggggttatct
     2521 ttttagatat tcgtgatcgt tcaggattat tgcaagtggt gtacgagcct gaaaataagg
     2581 aaatttttgc aattgctgaa aaactaagat cagagtttgt tgttcgtgtt actggcatag
     2641 tgcgtaaaag accagaagga atgatcaatg ataaaatgga gactggccgg gttgaggtaa
     2701 tcggtataca acttgaaatc cttaatcaat ctccaactcc accgtttttg ccagatgatc
     2761 atcaaattat caatgaagat ttgcgctata aataccgcta tattgatttg cggcgcgctg
     2821 ttatgcagaa gaaactgact ttaagacaca agttaaacag ttgcatacgt aattacttga
     2881 atgagcagaa ctttttagat atagaaacgc ctatgttaac taaagcaact cccgaaggcg
     2941 cacgggatta tcttgtgcct tcaagggtgc atccagggca gttctatgct ttacctcaat
     3001 cgccacaatt atttaagcaa ttgttgatga tgtcaggatt tgataaatat taccagattg
     3061 tacgctgttt tagagacgaa gatttaagag ctgacagaca gcctgaattt acgcagcttg
     3121 atatagaaat ggcatttatt aatgaagaag atatattgca gctaattgaa ggattgctta
     3181 aggttgtatt taaggaaatc cttaacatta ccttacctga taaattgcca agaatgtcgt
     3241 ataaagaggc tatgacacgc tatggaagtg ataaacctga tctgcgtaat ccactggagt
     3301 tgattgatat tgcagatttg gtaaaggatt gcgactttaa tgtatttgcc tctgctgcga
     3361 atgataattc aggaagagtg gttgctttaa aattacctaa tggatgtgat cttagtcgaa
     3421 aggatctgga taactatgga caattcgtaa ctatatatgg ggctaaagga cttgcatata
     3481 ttaaagtcaa cgatttaagt gctggtatgg cgggtttgca gtcaccaatt ctaaagtttt
     3541 tatctgaaac ggctgtgcaa tctattctta atcgggttga ggcgcagact ggcgacgtta
     3601 tttttttcgg tgctgacaaa gctcatgtag taaatgaatc tatgggagcc ttaaggaata
     3661 aactgggtca tgatagaaat ctgattaatc ctggatggca attactatgg gttatagatt
     3721 ggcctatgtt tgagttggat cctcagagca ataagttaca gcctatgcat catcccttta
     3781 catcccctca ggaattatct gctgaggcac ttcgctccaa gccaacgcaa acattagcca
     3841 aggcatatga tatagttatt aatggttatg aaattggcgg tggatctatt cgtatccatc
     3901 aacctgaact acaaaaaact gtatttgatt tgatcggaat tgatgagcaa gaagcacatg
     3961 agaaatttgg gtttttactc gatgccttac aatatggtgc tccacctcat ggaggaattg
     4021 cgttgggaat tgatagatta gctatgctgc tgacagactc aacttccata agggatgtga
     4081 ttgcgtttcc caaaactcaa acagcatctt gtcctttaac aagtgcgcca tcgcctgcgg
     4141 gcaatgcaca attaactgaa ctgggtataa gacttgcgcc aactattacg acaaagtaat
     4201 ttaaatttaa gcaccacaag ttttaaatac ttgtggcgct ttttcctgcc tctattttta
     4261 ttattattta gtttttcgct cttttcatcg tcggttaaag aaaataatgc cacgctagta
     4321 gaatatttgg ctcatgaaaa aactcatttg accattgcta tcaatgaaat taagcaaaag
     4381 agcgctccca aggatgagca agagtacaat gagaagttaa gacaaattag aactattctt
     4441 tcaatgaata aagcaaaaat tgagagtttg aatagtttta gtgaaaatca aaagaaagaa
     4501 gaagtcaatt tgaatgacca actaaagcgt ttgcaacaaa tgccacttgc caatgctgaa
     4561 gtaaccattc aggaaaaagt aggtaaaatc gagactttgc ttactgttaa taaaaaaact
     4621 actgagttaa ttgcagaaac tttggattta gccaaacagt atcaattact tttaaatgat
     4681 attttgaatg aattaaaact ttggaaagcc aacttcgatt tgaaagaaaa gcttaagtca
     4741 attaaagcta ttagagctaa attgaataaa gagctgaata tcctttatga gaatgcagta
     4801 tccagccaag atcaaaagca acagaaattg acgattagcg aacagattca atatgaagct
     4861 aatttgtaca tcaataatca aagaattgca gttattcatc aaaagttgaa tgtattggag
     4921 ttacagaaaa aggtaattaa aacgaatatc ctattattaa ataacttgga tactaaagcc
     4981 ttgcaatctg cgattgataa ttacagagag gttattaatc aatattcggc tatagagagt
     5041 tctttgcaaa ccattctgaa ttctcttaca aatcaggcca atctttttgt tgagccaggg
     5101 ttacaaaaat ccgttagctt attgcagcat gacgttaaaa cagaattaaa ggagacctct
     5161 aatcaaaaac ttatcttatc caaaaattta gaggattatc aaaatcaatt aaagaaacag
     5221 atctcaacaa gacaaagctt aagcgaatac aatatagaca gttgggcagt cattctcaag
     5281 aagctaattg atatccccaa tttgttttat aaatacatca aaacactaac cataaaggtt
     5341 tatgatagtt atacctggct agatactttt cctgctattt ttttatggac agttcttatt
     5401 tttatcctga gcctgtttta tattttaaat catgttttga agactttagc aagagataaa
     5461 gaacgctcga gatttaccgg ttatctttat ggtggaatac tcgttttact gcaaagaaac
     5521 atacctcatc tttgcttctt cgctatgtta tccttcattt tatactttac cagtatttcc
     5581 tatgctaact ctcaattatt aattaaactc attattgtgt ggcttacctt tagagtttta
     5641 attttaatag cccgtttgat tttgttagaa agtatatcgg attcatccgg taaggacgtt
     5701 aaattatatt atcgactaaa atggttgttg ctttttggtg gatggacaac cgcgttgatg
     5761 acatttagtc acttgttacc tttatcaatt ttattgcaag atatatttaa tcgattattc
     5821 atgcttttta tgttaacggt atcattggtc gcatggaaaa gtaaagatgt aattccttat
     5881 ctcattagac cattactgaa atcaaagaaa agatatttta aaaatgcaat
//
LOCUS       DACVWI010000168         5914 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.168, whole genome shotgun sequence.
ACCESSION   DACVWI010000168 DACVWI010000000
VERSION     DACVWI010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5914
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.168"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            4..726
                     /locus_tag="JBH85_11955"
     CDS             4..726
                     /locus_tag="JBH85_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAU0946915.1"
                     /translation="MATRNPFDIDHKSKYLREAALEANLSHPETTPTMLTCPIDSGFL
                     KDPVITPEGFVYNKSSILKWLETKKEDPQSRKPLTAKDLQPFPELLIIVNRFVETQTN
                     YEKLKNRLVQNARVAARQKEYTEIPDIFLCPISKTLIKTPVITAQGKVYDQEALSNFL
                     IATGNKDETGKKLSIDDVVVFDELYQQIKVYNFYRKREMQKNQIQPSVSSGFGFFSLN
                     FLTSWLWGTEEKKEKTSSDMTY"
     gene            847..>5914
                     /gene="sidH"
                     /locus_tag="JBH85_11960"
     CDS             847..>5914
                     /gene="sidH"
                     /locus_tag="JBH85_11960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SidH"
                     /protein_id="HAU0946916.1"
                     /translation="MKRTIETYIIYLKEDLKIADTCKTIKDGLLKSITDKTHFSEELA
                     TYFERDNPNAPFKVNTTDPTQVAVLKKLLNALENAEKSFRAIENIDISRDRYTAMIAK
                     DAVMVSYKAVHEIYAALQLINHSNSDIQDIVGPHIQKLLPQMALASKALGNFAPEHPE
                     ESAGAVLAGVVNMLPTEKPTESESLGKLSNLIFELPHYFEELQKLIATGASGIATKSI
                     TSAEDYQSAMIKKANETKYYFEQLSSKSGLLAIPSYLSIVKRLIAHSTDLVNAGAPLT
                     KQAYLDAVAKLEDIKHNILPQLISELEMVEESMGLKPGLLTDPALEQMNKYYTQLAEQ
                     VDNIAKAAGVLDTVSDYSDSIGGKIVRFLAGDSKKLDVGPKLTPAPDLGVLMDDVFIQ
                     KRRSNQESRLNEARLSSEDKSVLAAANRFFDKIGSYNSIHKAWSKWSLANISQSEKDA
                     LIKEYKQFQPHFAALYPDIDKLVVDALTQPTGSNIVSRLYSSDYKQLWSSDHFKQVLS
                     CKDSVLSSIQQSLAQSEFKAKLIEKTMSHSEETAYSMNNKTTNLTTRVQPFEPLKFTL
                     EDDKPVEYYHKRVIAASNQILELERAQKGVAEFFNYIQKKYPHENPSFDSLDESDKEF
                     LRKAYKTFQPQLLALKHDDINTRLVSSLTSSKPTDPPLRLTDLVSLKSGINDYLNEKI
                     SDLNQDKTTLLDKEEEAREEQYAKNPLVAKGAELEKQTLFGQMSKLKLSKSVDDFFNK
                     KFQTYLKDNLSPEVWKQLSSNGETLDFDKIPYLEFHKDSPEVAMYKQLINSMHYMKNG
                     LEKLESLNDYGDPNNIYHRTRFVMTTFNALVMNICFSKYYVMEAGNNPGLKAIVQEGL
                     DLLKPLEGMPLIGDYLKTTEKQEPPKQNIITAWKKQQAVVESGLSKGPKPKTDQQLIS
                     EQLGKIQEAIDNFDGDLEVSDSAREKIKTQIGEFAKGISGLSFGPGSVKKILAALTKL
                     ETQLSNLDKESPEVTLGKLKDIHSELNAQFRAAAEYTEYHSGQKFGSYSNNISTIVSN
                     FCNGLVSNLPLKQEPAPKVKAPEKPVTPVITGTTNPHEVVFGTKHEEFNSVYQPYLLL
                     KRITDEFRDQNNPYKPSFDELKEEAVSYYDKIQPLLESVDPKFDKNFIAKHKESSTLL
                     KAIDEVMSMRQRINNPESSFAKLKDLHLEGDFEKEENKEKFRQLYKEIQPYLHKIDST
                     YDQTQFLEGLKTAKDFSGALQRIMNEENALQQSTSLKDTSYLQLIAESLYQIPVKLNK
                     LKAEPDTPEPSKEEIDANVKAFVEGLNGLSFGPGSVKKILSTAAKLQMQLSDIGKEGR
                     ELTMGRLKEIQAEFGTILMAAADNAEFHLGLKPGTYSRTVSERFEKFYSSLIVNLPLE
                     KDQTGLELLIDTTSTQKRLAREMERLESVKEDTSAIDTKKSIFGTEHEQFSTLYQPYA
                     SLRHIAKDIEDGVHMNLYERTLEELKEEASNEYKKIQPYLAKINPEFTEDYISKTDGE
                     YSLLHAIDRVFEERHKINKPSSPFDKLRDLYLDGDFEKEENKEQFLQLYAELQPHLIK
                     INYQYDLAYFLRELQTPEDFKAATERIINDESKLQELITGLDDTKRLKVKLCEERIGY
                     FIDLLKKQELEVGPEKIQAFKEKIFFNYIHANVNSALDAKIGSHAEQFLQFIEKDFLD
                     KKNEILEKITIDQDMEEEIAK"
BASE COUNT         2084 a         1037 c         1153 g         1640 t
ORIGIN      
        1 gaaatggcga cacgaaatcc ttttgatatt gatcataaaa gtaaatactt aagagaagca
       61 gcattagagg ccaatttatc tcatccagaa acaacaccaa caatgctgac ttgccctatt
      121 gacagcggat ttctaaaaga tcccgtgatc acaccagaag gttttgttta taataaatcc
      181 tctattttaa aatggttaga aacgaaaaaa gaagacccac aaagccgtaa acccttaacg
      241 gctaaagatt tgcaaccatt ccccgagtta ttgattatag tcaatagatt tgttgagaca
      301 caaacgaact atgaaaaatt aaaaaacaga ttagtgcaaa atgctcgggt tgctgcacgc
      361 caaaaagaat acactgaaat tccggatata tttctttgcc caataagtaa aacgcttatc
      421 aaaacacctg tcattactgc ccaagggaaa gtatatgatc aagaagcatt aagtaacttt
      481 cttatcgcaa cgggtaataa agatgaaaca ggcaaaaaat tatccattga tgatgtagtg
      541 gtgtttgatg aactctatca acagataaaa gtttataatt tttaccgcaa acgcgaaatg
      601 caaaaaaatc aaattcaacc ttcagtaagt agtggttttg gcttttttag cttgaatttt
      661 ctcacctcat ggttatgggg aactgaggag aaaaaagaaa agacatcatc tgatatgacg
      721 tactaatgcc ccgtttttgc gcaatattga ttcaaagtga agtaaatttt gagagaaaaa
      781 accactatac tggcatgaat caactatatt aataatatag attgttcatt tgctggttga
      841 tgtggcatga aaagaaccat tgaaacctac atcatctatt taaaagaaga tttaaaaata
      901 gctgatactt gtaaaacaat aaaagatggt ttgttaaaat cgattaccga taaaacccat
      961 ttttctgagg aattggctac ttattttgaa cgagataacc ccaatgcccc ttttaaagtt
     1021 aacacgactg atcctaccca agtcgctgtt ctgaaaaaat tgcttaatgc tctggaaaat
     1081 gctgaaaagt cgtttcgagc tattgaaaat attgatatca gtcgtgatag gtacactgcc
     1141 atgatcgcta aagatgcagt catggtcagt tataaagcgg tgcatgaaat ttatgcggct
     1201 cttcaactaa tcaatcacag taattcggac atacaagata tagtaggccc acatatccaa
     1261 aaattattac cacaaatggc tttagccagt aaggcattag gaaattttgc tccggagcat
     1321 cctgaggaga gtgccggggc agtgcttgct ggtgtagtca atatgcttcc aactgaaaag
     1381 ccaaccgagt cagaaagttt gggtaaactc agtaacctta tttttgaatt gcctcattac
     1441 ttcgaggagt tacaaaaatt aatcgctacc ggggcatcag ggattgccac caaatcaatt
     1501 accagtgctg aagactatca atccgcaatg ataaaaaagg caaatgaaac aaaatattat
     1561 tttgaacaac tcagttccaa gagtgggcta ttagcaatcc caagctatct ttcaatagtc
     1621 aaaagattaa ttgcccatag tactgatttg gttaatgccg gtgctcctct gacaaaacaa
     1681 gcttatttgg atgctgtcgc taagcttgaa gacattaaac ataatatttt accccaattg
     1741 atttcagagc tggaaatggt tgaagaaagc atgggtttaa aaccaggttt actgaccgat
     1801 cccgctcttg aacaaatgaa taaatactat acgcagctgg cagagcaagt tgataatatt
     1861 gccaaggcag ctggagttct tgatactgtt tcagattatt ctgattcaat agggggaaaa
     1921 atcgttcgtt ttcttgctgg agatagcaaa aaactggatg tggggccaaa attaacgcct
     1981 gcacctgatt taggtgtttt gatggacgat gtatttattc agaagagaag atctaatcag
     2041 gaaagccgac ttaatgaagc cagacttagc tctgaagaca aaagtgtact tgccgcggcc
     2101 aatcgtttct ttgataaaat cggctcctac aatagcattc acaaagcatg gtccaagtgg
     2161 agtttggcaa acattagtca gagtgaaaag gacgctttaa tcaaggagta caaacagttt
     2221 cagccacatt ttgcggcatt atacccagat attgacaaac tggttgtaga tgctcttact
     2281 cagcctaccg gaagcaatat cgtttccaga ctatacagtt ccgattataa gcaattatgg
     2341 agttctgatc attttaagca ggtattatcc tgtaaggact ctgtgctatc cagtattcag
     2401 caaagccttg ctcaatctga gtttaaagca aagctcattg aaaaaaccat gagtcactca
     2461 gaagagacag cttattcaat gaataataaa acaactaatc taactactcg ggttcaaccg
     2521 tttgaaccac taaaatttac tttggaggac gataaaccgg ttgagtatta ccataagagg
     2581 gttattgcag catctaacca aattttagaa cttgaaagag cacagaaagg agtagcggag
     2641 ttttttaatt atattcagaa aaagtatccc catgaaaacc catcgtttga ttctctggat
     2701 gaatcggata aagaatttct tcgcaaggct tataaaacat ttcaaccaca attattggcg
     2761 ttgaagcatg atgatattaa cactcgcctt gtaagcagcc taaccagttc aaaaccaacg
     2821 gaccctcctc ttcgcctcac cgatctggta tctcttaaat caggtattaa tgactattta
     2881 aatgagaaaa ttagtgattt aaatcaggat aaaacgactt tgctggataa ggaggaagaa
     2941 gctcgcgaag aacaatatgc aaaaaatccc ttggtagcga agggggcaga acttgagaaa
     3001 caaacgctct ttgggcagat gagtaaattg aagttatcca agtctgttga tgattttttc
     3061 aataaaaaat ttcagactta tcttaaggac aatctttctc ctgaggtatg gaaacagctc
     3121 tcatcgaatg gagaaacgct tgattttgac aaaataccgt atctcgagtt tcataaagac
     3181 agccctgaag ttgccatgta caagcaatta ataaactcca tgcattatat gaagaatggc
     3241 ttggaaaagc tggagtcgtt aaatgactat ggtgacccca ataacattta tcaccgtacg
     3301 cgatttgtca tgaccacatt taatgctctg gttatgaata tctgtttcag taagtactat
     3361 gttatggagg caggaaataa tccaggatta aaggcaattg tccaagaggg tttggatttg
     3421 ctaaaaccat tagagggtat gccactcata ggtgattatt taaaaaccac agaaaaacaa
     3481 gagcccccca agcaaaatat tattactgca tggaagaaac aacaagcggt tgtagaatct
     3541 ggtttgtcaa aaggacctaa gcctaaaaca gatcagcaat taattagtga gcaattgggt
     3601 aaaattcagg aagccatcga taattttgat ggtgacctgg aagtttcaga ttcagccagg
     3661 gaaaaaataa aaactcaaat tggcgaattt gccaagggga tcagtggctt gtcttttggc
     3721 cctggttctg tgaaaaaaat actggctgcc ttgaccaaac tcgaaaccca gctttctaat
     3781 ctggataagg aaagtcctga agtaacactt ggtaaactta aggacattca ttccgaattg
     3841 aatgcgcaat tcagggcggc tgcagaatat accgagtatc attcaggtca aaagtttggc
     3901 tcctactcca ataacataag cactattgtc agtaattttt gtaatggtct tgttagtaat
     3961 ctgcctttaa aacaagaacc ggcaccaaag gttaaggcac cagaaaaacc tgttactcct
     4021 gttattactg gtacaactaa ccctcatgag gtagtttttg gcacaaaaca tgaagaattt
     4081 aatagcgttt atcagcccta tctcttgtta aagcgtatta ctgatgagtt tcgagatcaa
     4141 aataatccat ataaaccttc ttttgacgaa ttaaaagagg aagcggttag ttattatgac
     4201 aaaatccaac ctcttctcga gtctgttgat ccaaaatttg ataaaaattt catagcaaaa
     4261 cataaagagt catcaacact actgaaagct attgatgaag tgatgtcaat gcgccaacgc
     4321 attaataatc ctgaaagtag ttttgctaaa cttaaggatt tgcatttgga aggagacttt
     4381 gaaaaagagg aaaacaagga aaaatttcga cagctataca aggaaattca gccgtacctc
     4441 cataaaatcg atagtactta tgatcaaacg caatttttag aaggtttaaa gacagcaaag
     4501 gatttcagtg gtgctttgca aagaattatg aatgaggaaa atgctcttca acaaagtacg
     4561 tcactgaaag atacttctta tttacaatta attgcagaaa gcctctatca aattccagtc
     4621 aagctcaata agttaaaagc ggaacctgac actccagaac cttccaaaga ggaaatagat
     4681 gcgaatgtga aagcatttgt tgaaggatta aatggattat cctttggtcc aggttcagtt
     4741 aaaaagattc tgagtactgc cgctaaactg cagatgcagc tttctgatat tggtaaagaa
     4801 ggacgagaat taacaatggg gcgtttaaaa gaaattcaag cagagttcgg caccatttta
     4861 atggcggctg ctgataatgc agaatttcat ttgggcctaa agcccggtac gtattctcgt
     4921 actgtgagtg agcgatttga aaagttctat agttctctga ttgtcaattt acctttggaa
     4981 aaagatcaaa cgggtttgga gttattaatt gatacaacaa gcacacaaaa acgtttggca
     5041 agagaaatgg aacgccttga aagtgtcaag gaagatacca gtgcaatcga tacgaaaaaa
     5101 agtatatttg gtacagagca tgagcaattc agtactttat atcaaccata tgccagctta
     5161 aggcatattg cgaaggatat agaagatggg gtgcacatga atctgtacga gaggacatta
     5221 gaggaattaa aagaagaagc ttcgaatgaa tataaaaaaa ttcaacctta tcttgctaaa
     5281 attaatcctg aatttactga ggattacatt tccaaaacag atggtgagta ctcattactc
     5341 catgccattg acagggtatt cgaagagcgt cataaaatta ataaaccatc cagccctttt
     5401 gataaattaa gggatttata tttggatggc gatttcgaaa aagaagagaa taaagaacaa
     5461 tttttgcagc tttatgcgga gcttcaaccc catcttatca aaataaacta ccaatatgat
     5521 ctcgcttatt ttcttaggga gttgcaaaca ccggaagatt ttaaagccgc gacagaaaga
     5581 attattaatg atgaaagtaa acttcaagaa ttgattaccg gtttggatga tacaaaacga
     5641 ttaaaggtaa aattatgtga agagcgtata ggttatttta ttgatctgct aaagaaacag
     5701 gagctggaag ttgggccaga aaaaatacaa gcctttaaag aaaaaatatt ttttaattac
     5761 atccatgcta atgtcaatag tgcccttgat gctaaaattg gttctcatgc cgaacagttt
     5821 ctacaattca ttgaaaagga ttttctcgat aaaaaaaatg agattttaga gaaaattact
     5881 attgaccaag atatggaaga ggaaattgca aaag
//
LOCUS       DACVWI010000169         5911 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.169, whole genome shotgun sequence.
ACCESSION   DACVWI010000169 DACVWI010000000
VERSION     DACVWI010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5911
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.169"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            215..1975
                     /gene="phaC"
                     /locus_tag="JBH85_11965"
     CDS             215..1975
                     /gene="phaC"
                     /locus_tag="JBH85_11965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I poly(R)-hydroxyalkanoic acid synthase"
                     /protein_id="HAU0946917.1"
                     /translation="MLSGARMTHDTELSELMQAVAKKSLQIMTDFKEKPIPISSLVSQ
                     YIDLTEHFQNLIAVILKNPEKVWQMQLNYLEDALSLAQAQFNYWLEGKPLPINDQRFN
                     GEDWINNPFFNLLSQHYLLANEHMNSLLENMEYGDENLAKRVRFFTRQYLDALSPANF
                     IHTNPQLMAETLQSHGKNLLRGLHNLLSDVEAGSSRLIIKMTDTEAFKIGENLATTPG
                     KVIFRNSMMELIQYCPRTTKVKSIPLLIVPPWINKYYILDLSPHNSLIRWLVEQGITV
                     FIISWVNPDETYANKSFYDYLNEGPREAIAVIQKQLRVKQVNTLGFCIGGTLLASLLA
                     YNKATKDHSIRSATFLAAMIDFSDPGDIAVFIDEQQINKLEEEMKSKGYLAGKFMASS
                     FNSLRANDLIWSFFIKNYLRGKSPVPFDILYWNADSTNMPATMHSQYLRWMYLHNNLI
                     KPGKIRLNHIPIDVTNIDIPTFFLSTQKDHIAPWKTTYKGFELMKGPKRFVLGGSGHI
                     AGIINPPTQQKYGYRTNNSMDLSAEQWFEKSKEHSGSWWPEWLNWLKLHSGRLINSPD
                     INHLPFAPIMDAPGSYVLKK"
     gene            2024..2407
                     /locus_tag="JBH85_11970"
     CDS             2024..2407
                     /locus_tag="JBH85_11970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946918.1"
                     /translation="MRKKNRILLASLFLLGSLNAFAAQDLTVVNTSDDLGYVTIGSYS
                     CELTSSCAIPPDNSIHINSDILEAACANTSADCEIVFGVDSIKARIATGSFSLNEGIQ
                     YIAQSRWLNYSAKRLSKTVAEIYKR"
     gene            complement(2494..2913)
                     /locus_tag="JBH85_11975"
     CDS             complement(2494..2913)
                     /locus_tag="JBH85_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1499 domain-containing protein"
                     /protein_id="HAU0946919.1"
                     /translation="MKLIWIVLALILALVVILYLFPQINFREMPKGLVEGQLPDDKPN
                     WVSSLVNESDSHYIAPLKVESMPQLVACIERKIPELKIQKQEASFLVGYRQSPFFHFV
                     DWLCIHADGNVISSATMGYSDFGKNRELVEKIRSLCL"
     gene            complement(2914..5115)
                     /locus_tag="JBH85_11980"
     CDS             complement(2914..5115)
                     /locus_tag="JBH85_11980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HAU0946920.1"
                     /translation="MMTKTNEENLTWKGKQKQRARAWIKIFLEKWFRIEVKGQYQANS
                     HSVIIANRASIIDVLLLSVFLPERLTLALHPDMFKKIWVKTLLFFADVIVVDPGSAQA
                     TRILIRAIRAGKRCLLFPQGLLRQQEDSLKVFEGPGLILQRVGAEVIPVRIEGAEHSI
                     FSNSKNKHRIRIFPKITLHILPAQKLSQAENTGVDREGISLRLFQLISDLSFANSFKP
                     YVLFSALIEGVSIGTKNKTKIEDNNRIPLTYRQFLARCFILGRQIKKQTAVGETVGVM
                     MPTTIAGMVTFFALQAYRRIPAMLNFSMGFYNLYSACNTARIKSIYTARQFIETAKLE
                     PLVEEFQQAGIRIHYLEDFKSTIHLGNKLSGIFKGFFPTLSYRFLGDKISSDTTGIIL
                     FTSGSEGKPKGVALSHANILANCWQMTSRVDFTPRDVLFNSLPIFHCFGLTAGSVLPL
                     VNGLNCFFYPSPLHYKVIPGLIYQTRATILFGTDTFLTGYARAAGKHDFNSVRYIFAG
                     AEKVKPETIRYWSEAFGARIYEGYGATEASPVISLNCPLASVPGSVGMILPFMDFKVE
                     PVEGIVQGGRLKLCGPNIMLGYLDEDKPGVIIEPEDGWHDTGDIVTVNADGFITIAGR
                     AKRFAKIAGEMVSLTAVEGIAASIWPELLHAAVVQKSPRKGEQIFLFTEAEYADKVSF
                     IKKVKERGQSELLVPHMIYPACQIPVLPSGKIDYITLEKQFLEQKETMETV"
     gene            5258..>5911
                     /locus_tag="JBH85_11985"
     CDS             5258..>5911
                     /locus_tag="JBH85_11985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAU0946921.1"
                     /translation="MREGLRVLNSCNKVRGIFTLTQKTIKTFCFILAILVLIIFAVVF
                     HNHSLEIIDYIDDLGWLAPVLFLITYCLATLLLLPTMVLTLAGGAVFGPVFGTLLNLL
                     GATSGAALAFLITRHLVYDWFSTKKGEKLNKLIAGVDEKGWVFVAFLRLFPIVPFNLV
                     NYGLGVTGISFRLYLLTTFIFLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLA
                     "
BASE COUNT         1813 a         1183 c         1080 g         1835 t
ORIGIN      
        1 aaagggagat tttaccttat tgataaggaa ataagcaaat aaaatcttct gttctacctt
       61 ggcgatttca tgcattttaa tattttttac aataggttag tcatcaaggg aatgggcttg
      121 ccaatattcc atctgtctat aatgtgctct ggatttaata tagaatactc ttgataaaca
      181 caaccaaacc cataagaata agctattcga ttatttgctt tcaggagcca ggatgactca
      241 cgacactgaa ctaagcgaac tgatgcaggc tgtagctaaa aaaagcctgc agattatgac
      301 cgatttcaaa gaaaaaccca tcccgatttc atcgctggtc agtcaataca tcgatctcac
      361 ggagcatttc caaaatttga ttgccgtcat tctaaaaaat cctgaaaaag tatggcaaat
      421 gcagttgaat tacctagaag atgccttaag tctggctcaa gcacaattta attattggct
      481 tgaaggaaaa ccactgccta ttaacgatca gcgttttaat ggggaagatt ggataaacaa
      541 tccttttttt aacttgctaa gccaacatta tcttttggca aatgagcata tgaattcatt
      601 gctggaaaat atggaatatg gtgacgagaa tctggcaaaa agagtacgtt ttttcacccg
      661 acaatatctt gatgctttat ccccagctaa ttttattcac acgaatcctc agctcatggc
      721 agaaacatta caaagtcatg gtaaaaacct attacgtgga ttacacaatt tgctatccga
      781 tgttgaagca ggatcttcca gattaatcat taaaatgact gatacggaag catttaaaat
      841 cggtgagaat ctggctacaa cgcctggtaa agtcatattt cgcaattcca tgatggagtt
      901 aatccaatat tgccccagaa caacaaaagt aaaatccata cctttactta tcgttcctcc
      961 ctggattaat aaatactaca ttttagactt aagcccgcat aattcattaa tacgctggtt
     1021 ggtcgaacaa gggattactg tttttattat ctcctgggtc aaccctgacg aaacgtatgc
     1081 caataaaagc ttctatgatt atttaaatga aggccccaga gaagccattg cagtaattca
     1141 aaaacaattg cgtgttaaac aagtcaatac gctgggattc tgtataggcg ggacacttct
     1201 ggcttctctt ttagcctaca ataaggcaac taaggatcat tccattcgca gtgcaacctt
     1261 tttagcggca atgattgatt tcagtgatcc tggggacatc gctgttttta ttgatgagca
     1321 gcagattaat aaacttgaag aagaaatgaa atccaaaggt tatctggctg gcaaatttat
     1381 ggcgtccagc tttaattcct taagggcaaa tgacctaata tggtcatttt tcatcaaaaa
     1441 ttacctgcgc ggtaaaagcc ctgttccttt tgacatactc tattggaatg ctgattcaac
     1501 taatatgcct gcaaccatgc attctcaata tttacgttgg atgtatttgc ataataactt
     1561 gataaaacct ggaaaaattc gccttaatca tatccctatt gacgtaacaa atatcgacat
     1621 acccactttc tttctgtcta ctcaaaaaga tcatatcgct ccctggaaaa caacatataa
     1681 aggatttgaa ttaatgaagg ggccaaaacg ttttgtttta ggtggatctg gacatattgc
     1741 aggaattatt aatccgccaa cccagcaaaa atatggttat agaaccaata acagcatgga
     1801 tttatctgct gagcaatggt ttgaaaaatc caaggaacac tccggttcat ggtggccaga
     1861 atggttaaat tggcttaaat tgcattccgg aagactcatc aattcccctg atatcaatca
     1921 cttgccattc gcaccgataa tggatgctcc agggagttat gtactaaaaa aataatattt
     1981 tgaactcaat aaccatacat taaaacataa aaggagttgt attgtgagaa aaaaaaacag
     2041 gatacttttg gcaagtttat tcttgctagg cagcctgaat gcctttgctg ctcaagatct
     2101 gacggttgtt aatacgtccg atgatctggg atatgtgaca ataggatcct attcctgtga
     2161 attgacttcc agttgtgcta ttccccctga taattcgatt catattaact ctgatatctt
     2221 agaagcagct tgtgcgaata cttccgctga ttgtgaaatt gtttttgggg ttgacagtat
     2281 aaaagcaaga atcgcgaccg gaagctttag tttgaatgag gggatacaat acatcgccca
     2341 atctcgttgg ctgaattatt ctgctaagcg tttatccaaa accgtggctg aaatctataa
     2401 aagataattc gatttattcc ctgctgatgt cctggttgaa gtacacagca atagccagga
     2461 caaggtgcaa tgacatggat tgattaagat aaatcataaa cacagggatc tgattttctc
     2521 caccagctct ctgttcttgc caaaatcaga ataccccatg gtggcacttg aaataacatt
     2581 cccatccgca tggatgcata gccaatcaac aaaatggaaa aaggggcttt gtctataccc
     2641 caccagaaag gatgcctcct gtttctggat tttcaattcc gggatcttgc gttcaatgca
     2701 tgctaccaat tgaggcatac tctcaacctt caaaggagca atatagtgag aatccgattc
     2761 attaaccagg ctacttaccc agtttggctt atcatctggc aattgcccct caactaaccc
     2821 tttcggcatt tctcgaaaat tgatttgagg aaataaataa agaatgacaa caagggctaa
     2881 aataagggct aatactatcc atattaattt catttatact gtttccatgg tttctttctg
     2941 ttctaaaaat tgcttttcaa gcgttatata atcaattttt cctgaaggca ggacaggaat
     3001 ttggcatgcc ggataaatca tatgaggaac cagcaattct gattgccctc tctccttaac
     3061 cttttttata aatgatactt tatctgcata ctctgcttca gtaaataaga aaatttgctc
     3121 cccctttctt ggagattttt gcacaacagc ggcatgtaat aattcaggcc aaattgaggc
     3181 tgcaattcct tccaccgctg taagagatac catttcacca gcaatcttgg caaaacgttt
     3241 ggcgcgacct gctatagtaa tgaatccatc cgcattcacg gtgacgatat ctcccgtatc
     3301 atgccaacca tcttcaggtt ctataattac tccaggttta tcctcatcaa gataacctaa
     3361 catgatattg ggtccgcata attttaaacg cccgccttgt acaattccct ctactggttc
     3421 tactttgaaa tccataaaag gtaaaatcat tccgacacta cccggtactg atgccaaagg
     3481 acaattaagc gatatgactg gcgatgcctc agtagcacca tagccttcat aaattcttgc
     3541 cccaaacgct tcgctccagt atctaatggt ttccggtttc actttctcgg cgccagcgaa
     3601 gatatagcgg acgctgttga aatcatgttt gcccgcggcc cttgcataac ctgttaaaaa
     3661 agtatctgtg ccaaacaaaa tagtagccct tgtttgataa atcaatccag gaattacctt
     3721 ataatgaaga ggggaagggt agaaaaaaca attcaaacca ttaaccaaag gaagcacact
     3781 tcctgctgta aggccaaaac aatggaatat aggtaaggaa ttaaataaaa catctcgtgg
     3841 agtaaagtcg actctggaag tcatttgcca acaattagcc aatatattgg catgactaag
     3901 agcaacccct ttgggttttc cctcagaacc agaggtaaac aggattatgc ctgttgtatc
     3961 agaggatatt ttgtcaccaa gaaaacggta gcttagagta ggaaagaagc ctttgaatat
     4021 cccggaaagc ttgttaccta aatgaatggt tgatttaaaa tcttctaaat aatgaattct
     4081 tatacccgcc tgttggaact cttctaccaa gggttctaat ttggcggttt ctatgaattg
     4141 tcttgcggta taaattgatt taattcttgc tgtattacaa gctgaatata agttataaaa
     4201 acccatgcta aaatttaaca tggcaggtat tcgtctataa gcttgtaaag caaaaaaagt
     4261 gaccatgcca gctatagtag tcggcatcat tactccaaca gtttcgccta cagccgtttg
     4321 ctttttaatt tggcgcccca gaataaaaca acgagccaag aactgtctgt aagttaatgg
     4381 aatacgatta ttgtcttcta ttttagtttt gtttttagtt cctatactta ctccttcaat
     4441 taaagcagaa aataaaacat atggcttaaa actattggcg aatgataaat cgcttattag
     4501 ttgaaataaa cgtaaactga taccttctct gtcgacacct gtattttcag cttgactcaa
     4561 tttttgagca ggtaatatat gaagagtaat tttcggaaaa atccgtattc gatgtttatt
     4621 tttgctatta gaaaaaatac tgtgctccgc cccttcaata cgaacaggga ttacctcggc
     4681 gccaaccctt tggagtatca atccaggtcc ttcaaagacc tttaagctgt cttcctgctg
     4741 tcttaataac ccttgtggaa atagaagaca acgcttgcca gcccgtattg ctcttattaa
     4801 aattcttgtt gcctgagcgc tgcctggatc aactactatg acatcagcga aaaataataa
     4861 cgtttttacc catatttttt taaacatatc aggatgtaaa gctaaagtta atcgttcggg
     4921 taaaaataca gaaaggagta acacatcaat tatagaagcc ctgttggcaa taatgacaga
     4981 atgactgttc gcctgatatt gtcctttaac ctctatgcga aaccatttct ccagaaaaat
     5041 ttttatccat gccctagccc gctgtttttg ttttcccttc caggtcaaat tttcctcatt
     5101 tgtttttgtc atcatgtcgc atcagttatc tctatattga cttttattct gcaagattca
     5161 aaacgatttg aatagatagg tttatgaatc atgttgattt catttaaaaa atttaagcga
     5221 aagcaacatc tgtttttatg ataatttacc cggaatattg agagaaggct tgcgagtcct
     5281 taattcctgt aataaagtga ggggcatctt tactttaaca caaaaaacca ttaagacatt
     5341 ctgtttcatt ttagccatat tagttttaat tattttcgca gtggtctttc ataatcattc
     5401 gttagagatc attgattata tagacgatct gggttggctt gcccctgttc ttttcttgat
     5461 cacctactgc ctcgcgactt tattgctttt acccacaatg gtattaactc tggctggagg
     5521 agctgtgttt gggcctgtat ttggtacctt gcttaattta ttgggcgcca ctagcggcgc
     5581 tgcgttggca tttctgataa caagacacct ggtttacgat tggttctcaa ccaaaaaggg
     5641 tgaaaaacta aacaaattga ttgccggggt agatgagaaa ggttgggttt ttgtggcttt
     5701 cttgcgattg tttccaatag tcccttttaa cctggtcaac tatggcttag gagtaactgg
     5761 catatcattt cgtctttatt tgctaactac ttttattttt ctaattcctg cagaaattat
     5821 ttatacctat tttggatacg tcggcatgga tgctctgaca aggccaggcc atttatatag
     5881 gaatggtgga atttttctaa ctggattagc g
//
LOCUS       DACVWI010000170         5824 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.170, whole genome shotgun sequence.
ACCESSION   DACVWI010000170 DACVWI010000000
VERSION     DACVWI010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5824
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.170"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(107..1339)
                     /locus_tag="JBH85_11990"
     CDS             complement(107..1339)
                     /locus_tag="JBH85_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HAU0946922.1"
                     /translation="MNRPVVIVDPLSSGIELAPAFKARGIPAIAVTLKPLDWIGFGAN
                     MQTSDFIEIIPDQPNLVEVLAKYDPIAIIPGTEEGVPLAEALAINLTPQFANDPEKSQ
                     NRLHKAMMQKALQEAGVPALKTLNTASENEVEAWIRTNGLIDSPLIIKPPVSAGSDKV
                     FHIPARGEWKKAFNRVLSEPSKITGKVNATVVVQEQAIGTEFAVGTVSANGKHYLAHL
                     IQYNKTSFNDRKTVYDYVEFVPYSKERYGELFDYTQKALDALGIRWGAAHNEIMLTKD
                     GPRLIETGARMCGGPVVGFAREATGSSQADKLVEIYVDGGVSAEEYVFKKTVVPVFLK
                     SPAKGKISNVEAFADLSKLPTFLNEHIWFKNGDLVPQTVDYLTSIGIIGLAGDRDSIL
                     LDYEKIRNMESKLVIQTF"
     gene            complement(1336..2484)
                     /locus_tag="JBH85_11995"
     CDS             complement(1336..2484)
                     /locus_tag="JBH85_11995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946923.1"
                     /translation="MNKSLIFLAIGMFTVGCNTFLIAGLLPQIGETLEQSVAVTGQGV
                     SLFSLTYLFSAPLFSLILVNQPVKRMIQLALTVFMLGNLITLLSENIVLFLIGRSLAG
                     AGTGIFTPLCISIAIHFTRPSAKGRILSFIWSANSAGVVFGVPAGLYLSSLFHWQLSI
                     ASLIILSLLALIGFSMQNIDIKLPKPSPFGGRLRLLIEPKTLSVIGITCFTALASLGL
                     YSYVTLIQSGSPNSLSMTLLSWGLGGFIGSSLIGVFIDRTGKPRVIMALILVGLMFAL
                     IAIPFTRNLPYLGLIPFFMWGACGWAIVTPQQHILYELHENQGTILAAINSSALGLGS
                     ALGTLLGGLLISSGFRGIYLPFSAATLLFFVLIIQLIVINTSHKVNNI"
     gene            complement(2481..3923)
                     /locus_tag="JBH85_12000"
     CDS             complement(2481..3923)
                     /locus_tag="JBH85_12000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HAU0946924.1"
                     /translation="MSAQVADVVIVGAGPVGLMCAYLGQLCGINVVIVDKSNCPLEVG
                     RADALNARTLQLLELVDLFDELYPLGKTCNTSSVWADGQFISRQSSWWEELEGCLHKH
                     FLMLGQSYVEKLLDDKLKETAAAVKRSTAIVNIEINEAGCLTTLANGERIQSRYVIGA
                     DGSRSFVRNHFAIPFEIIRPQIIWAVIDGIIDTDFPKVPEIIVFQAETSDVAWIPREG
                     EIDRFYVRMDTKDFTLQEAMDKINHAVRPHSLNFKDIVWFSQFSVKESVAESFFIQDR
                     IFLAGDACHIHSVNGGQGLNTGLADAFNLMWKLHMVMHFGAPKELLHSYEAERKPVAH
                     GVIETSGELVRSTKYSLNGTHAQDYVRIVQKRAGYITGMGIRYGETGLCGSRLFDFEI
                     FNGIAKTRLYSLLDYMKFTLFIFGDCEVELQPPEFVKVIPIYPNQYQKNFWTNNTHYA
                     NQAILVRPDSYIQYAVPLDKIESLFELAQL"
     gene            complement(3920..4756)
                     /locus_tag="JBH85_12005"
     CDS             complement(3920..4756)
                     /locus_tag="JBH85_12005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HAU0946925.1"
                     /translation="MNYKVTSLKPFGVLLEPVSEKTKVTDVDIENLRHLFAKNQLVVL
                     RGFCAFQNAEDFSNYCELWGEVSLWPFGKVLELIEQEDPEDHIFDHSYMPLHWDGMYR
                     PQVPEYQIFHCVKAPLPGQGGRTTFSNTILALQFASSEIKELWNKVSGTYQRKMEFYN
                     SKTVSPIITKHPQKDFSVIRYNEPPSVDKGHFVNPPDIEFTGIDQEELDFFHRSLENA
                     LYSPDNFYAHEWQNGDIVIADNFSLLHGREGFVSRSPRHIQRVHVLSNPPFDNPGLES
                     YQ"
     gene            complement(4746..5795)
                     /locus_tag="JBH85_12010"
     CDS             complement(4746..5795)
                     /locus_tag="JBH85_12010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyoverdine biosynthesis protein PvcA"
                     /protein_id="HAU0946926.1"
                     /translation="MKNTAFLITKNHYPKDYRLKKSPDSDSAMGVAKRILAEVMIFRR
                     VPETISLCGTGCQKCASPHLPKIISAVNKNEPVTFILPAFPGKSPNPEKVLGHLPDHA
                     ERLSLNFLGTLCQRIKNFYTPGIKIILCSDGRVFSDVVGMNESDVTAYQLELDRLIKE
                     MSLADLSTFNLDYFYKDLHFVQMREELMKSYGQSLDFLKQKIRNGAKPSASPDEQEAN
                     RMYSGITRFLFEDAMHAGQTKSRTAIQKESRFKAYEVIRRSNAWSALIAERFPKAVRL
                     SIHPQTCGSKKLGIRLIGNESWMTPWHGVAVESNKGYVLLRRSEAEALGAKLICSSDG
                     RHSHYQLMAEVSYEL"
BASE COUNT         1773 a         1305 c         1131 g         1615 t
ORIGIN      
        1 agctgtttgt ttattaggct aaagaattgt tcatataaaa ctcaagtaac cataatactt
       61 caaaccattg aaaaaatatt tcaatggcag ttcaacaata gaaatcctaa aatgtttgga
      121 taaccaattt cgactccata tttcgaattt tttcgtaatc taataaaatg gagtcgcggt
      181 ctccagccaa cccaataatt ccaatactcg ttaaataatc aacggtttgt ggaacaaggt
      241 caccattttt aaaccaaata tgttcattaa gaaaggttgg taatttcgat aggtcggcga
      301 aagcttcaac attcgaaatt ttgcctttag cgggtgattt caaaaaaaca ggcacaaccg
      361 tttttttaaa tacatattct tctgctgaaa cacccccatc gacatagatt tccactaatt
      421 tatcggcttg actactgcct gtcgcctctc gagcaaagcc aaccactgga ccaccacaca
      481 ttctggcgcc tgtttctatg aggcgagggc catctttagt gagcatgatt tcattatgag
      541 cagctcccca gcgaattccc aaagcgtcca atgctttttg cgtataatca aataattcac
      601 catatctttc tttgctataa ggcacaaatt ccacatagtc gtaaactgtt ttgcgatcat
      661 taaaggatgt tttattgtat tggattaaat gcgctaaata gtgttttcca ttagcactca
      721 ctgtgcctac agcaaattcc gttcctatgg cctgctcttg cacaactaca gttgcattga
      781 cttttccggt aattttagat ggctccgata aaacccggtt gaatgctttt ttccactccc
      841 ctctggctgg aatatgaaag accttatcac tgccagcaga tactgggggt ttaataataa
      901 gtggagaatc aattaatccg tttgtcctga tccaggcttc aacctcattt tcagatgccg
      961 tattgagcgt cttaagggca ggaactccag cttcctgcag tgctttttgc atcatagcct
     1021 tgtgcaatct attctgtgat ttttcaggat cattggcaaa ttgaggcgtc aagtttatcg
     1081 ccaacgcttc cgcgagaggg actccttcct cagtaccagg aataatggca atagggtcat
     1141 attttgcaag tacctccaca agatttggtt ggtctggaat aatctcgata aaatcagagg
     1201 tttgcatgtt tgctccaaat ccaatccaat ccagaggttt aagcgtgact gcaatagcag
     1261 gtatccctcg agccttaaag gcaggggcta actctattcc tgatgataat ggatcgacaa
     1321 tgacaacggg cctgttcata tgttatttac cttatgtgaa gtgttaatta ctatcagctg
     1381 aattatcaat acgaaaaaca ataaagtggc agcagaaaaa ggaagataga ttcccctgaa
     1441 tccagaggaa atcaataagc cgccaagcaa cgttcccaaa gctgacccca agcccaaggc
     1501 cgatgaattg atagcggcaa ggatagttcc ctgattttca tgtaattcat ataaaatgtg
     1561 ttgctgggga gtcactatag cccatccgca agcaccccac ataaaaaaag ggattaatcc
     1621 caggtaaggc agattcctgg tgaatggtat ggcaatcaga gcaaacatga ggccaaccaa
     1681 aattaaggcc ataataaccc ttggtttacc cgttcgatcg ataaacaccc caatcagtga
     1741 gcttcctata aatccaccca gtccccaact caatagcgtc atactgagcg aattagggga
     1801 tcctgattga atcagggtga catacgagta taatcccaaa cttgccaaag cggtaaagca
     1861 agtaattcca attaccgata gcgtttttgg ctcgatcaga agacgaagcc tgcctccaaa
     1921 tggcgaaggt ttgggtagtt ttatatcaat gttttgcatt gaaaaaccaa tcaatgcaag
     1981 caaacttaaa ataataagac tggcaatcga taactgccaa tgaaacaagg aggataagta
     2041 aagtccggca ggaacgccaa atactacacc cgcactgtta gcactccaga taaaacttaa
     2101 aattcgtcct ttggcagatg gcctggtaaa atgaatggca atgctgatac ataacggcgt
     2161 aaaaatcccg gttcctgctc ccgccagaga tcttccaatt aaaaacagca cgatattttc
     2221 agaaagtagc gttattaaat tgccaagcat gaagacagta agcgcaagct gaatcatacg
     2281 ctttaccggc tgattaacca aaatcagaga aaaaagtggc gctgaaaaaa gataagtcaa
     2341 actgaataga ctcactcctt gcccagttac cgcaaccgac tgctcgagcg tttcgcctat
     2401 ttgaggaagc agaccagcaa ttagaaatgt attgcaacct actgtaaaca tgcctattgc
     2461 taaaaaaatc aggcttttat tcataactgc gccaactcaa ataaggattc tattttatcc
     2521 agcggcacag cgtattgaat gtaggagtca ggccttacta aaatggcctg gtttgcatag
     2581 tgtgtgttat tggtccaaaa atttttctgg tattggtttg gatatattgg aatgactttg
     2641 acaaactccg gaggctgtaa ctcgacttca cagtcaccaa agataaataa agtgaatttc
     2701 atataatcca gaagagagta aagccgtgtt ttggcaatgc cattaaaaat ttcaaaatca
     2761 aagagtcgag aaccacacaa acctgtttct ccataacgaa tccccatccc cgtgatataa
     2821 cccgcgcgct tttgcacaat cctgacatag tcttgggcat gggttccatt aagcgaatac
     2881 ttggtcgagc gcacaagctc accggaagtc tctatcacac cgtgagctac tggcttacgc
     2941 tcagcttcat aactgtgtaa aagttctttg ggagcgccga aatgcatgac catgtgcaat
     3001 ttccacatga gattaaacgc atctgcaaga ccagtgttaa gaccttgccc accgtttacc
     3061 gaatgaatat ggcaggcgtc accggcaaga aaaatgcgat cctgaatgaa gaaactctca
     3121 gcgacagatt ctttaactga aaattgtgaa aaccaaacaa tgtccttaaa atttaaggaa
     3181 tggggccgca cggcatgatt aattttgtcc attgcttcct gcaaggtaaa gtctttagta
     3241 tccattctta cgtaaaacct gtcgatttcc ccttcccttg gaatccaggc cacatccgaa
     3301 gtttctgcct gaaacacaat gatttcagga acttttggaa aatcggtgtc aataatacca
     3361 tcgattaccg cccatataat ttgtggccgt atgatctcaa aaggtattgc aaaatgattg
     3421 cggacaaagg aacgagatcc atcggctccg atgacgtagc gtgactgaat gcgctctcca
     3481 ttggcaagag tcgtaagaca tcctgcttca ttaatctcaa tgttgacaat cgcagttgaa
     3541 cgttttactg ctgccgcagt ttccttcaac ttgtcatcta acaatttttc tacataggat
     3601 tggccaagca taaggaaatg tttatgcaaa caaccctcca attcttccca ccatgacgat
     3661 tgtcgggaaa tgaattgccc gtctgcccat acagaactgg tattgcaggt ctttcctaaa
     3721 ggataaagct catcaaataa atcaactaat tcaagaagtt gtaaagtgcg cgcgttaagg
     3781 gcatctgctc taccgacctc taaaggacaa ttagacttat cgacaatcac aacattgatg
     3841 ccacatagtt gtcccagata agcacacatg agccctactg gacccgcacc gacaattaca
     3901 acgtctgcaa cttgtgcgct cattgataag actccagacc cgggttatca aaaggcggat
     3961 tactcaaaac atgaacgcgt tggatatgac gaggcgacct ggagacaaac ccttctctgc
     4021 catgtaataa agaaaaatta tctgcaatga cgatgtcccc gttttgccac tcatgagcat
     4081 agaaattatc cggtgagtaa agagcgtttt ctaaacttcg gtggaagaag tccaactctt
     4141 cctgatcaat accagtaaat tcaatatcgg gtggatttac aaaatgacct ttatctacag
     4201 agggaggttc attgtagcga atgactgaaa aatccttttg aggatgcttc gtgataattg
     4261 gtgataccgt cttgctgtta taaaactcca ttttcctttg gtaggtacca ctcaccttat
     4321 tccataattc tttgatttct gaagaggcaa actgtaacgc taaaattgtg tttgaaaaag
     4381 tagtccttcc tccttgtcca ggcaaaggcg ctttcacaca atgaaaaatc tgatattcag
     4441 gcacttgggg tcgatacata ccatcccaat gcaagggcat gtaactatga tcaaaaatat
     4501 gatcttccgg atcctcttgc tcaattaact caagtacctt gccaaatggc caaaggctga
     4561 cttctcccca caactcgcaa taattagaaa aatcctctgc attttgaaag gcgcaaaagc
     4621 ctcttaatac aacgagttga ttctttgcaa ataaatggcg caagttctct atatcgacat
     4681 cagtcacctt cgttttttcg ctcacaggct ccaagagtac tccaaatggt tttagagaag
     4741 tcactttata attcatatga cacctccgcc attaattgat aatgactgtg ccgaccatca
     4801 gaggaacaaa ttaattttgc acccaaagcc tcagcttccg agcgcctcag caagacatac
     4861 cccttattgc tttcaacagc aacaccatgc caaggggtca tccagctttc attccctatc
     4921 aaccgaatcc ctaatttttt tgatccgcaa gtttgtggat gaatagacaa ccgaactgcc
     4981 ttgggaaagc gttcggcaat gagcgcactc caggcgttgc ttcttcttat aacctcatag
     5041 gctttaaaac gagattcttt ttggatagca gtacgacttt tggtttgacc tgcatgcatg
     5101 gcatcttcaa acaaaaaacg cgtaattccg ctatacatgc gattggcttc ttgttcatcg
     5161 gggcttgctg agggttttgc accattacgg atcttttgtt taaggaagtc cagggactgt
     5221 ccatagcttt tcatgagttc ctcacgcatt tggacaaaat gaagatcttt ataaaaataa
     5281 tcaagattaa aagtggacag atctgcaagg gacatttctt ttataagtct gtccagctcg
     5341 agctggtagg ctgtgacatc actttcattc attccaacca catcgctaaa aacccttcca
     5401 tcggaacaca gaataatttt aatccccggg gtataaaaat tttttattcg ctgacaaagt
     5461 gttcccaaaa aattaagaga aaggcgttca gcatgatctg gcagatgacc cagaactttt
     5521 tcagggttgg gagattttcc cgggaaggca ggcaatataa aagtaaccgg ttcattctta
     5581 ttaactgccg agatgatttt tggcaaatga ggtgaagcgc acttttggca tccggtgccg
     5641 cataaactaa tggtttccgg gacacggcga aaaatcatta cttcagctaa tattcttttg
     5701 gctactccca tagcagagtc actatcgggt gattttttca gtcgataatc tttagggtaa
     5761 tgattctttg taattaaaaa cgctgtattc ttcattttcc ttccctcctg aaaaagagag
     5821 taca
//
LOCUS       DACVWI010000171         5810 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.171, whole genome shotgun sequence.
ACCESSION   DACVWI010000171 DACVWI010000000
VERSION     DACVWI010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5810
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.171"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            33..1571
                     /locus_tag="JBH85_12015"
     CDS             33..1571
                     /locus_tag="JBH85_12015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAU0946927.1"
                     /translation="MQKANAKIQNINEIMFSDRVMLLNKNLLVSIPANFLCALIIYID
                     FNKTTTDQEMLSVWFMVGVTVFVLHGGLFLFNYYRSLPSKYLLKWLISVTAIYGALWG
                     IAGSVLIPQNDLLNQMIVIIIIIGIASGGLHILQPSFLASLLFFTLTLIPLCVWFFQQ
                     STLNYWFLGTALLIYFCFLLIISWMGYGLLNKNFKLRYENLDLINKLYAINANLEESE
                     LRFRSAFNSAAIGMAIVSLEGMWLKVNQSLCQIVGYSEEELLETNFQSITHPEDLELD
                     LGYVRQLLEGDIRFYHMEKRYIHKNGSVIWILLSASLIRDLDNKPLYFISQIQNIDAQ
                     KRAEQELQHIAYHDTLTGLGNRKLLELSFDQALAHAKRHQTQIAIMFMDLDYFKNVND
                     KLGHDIGDLLLVEIGKRLQTILRSTDLIVRHGGDEFIIALTELSNVNQVIEIANKILI
                     AVSKPITIKRYGISITGSIGISIYPYDGDDSDTLIRKADEALYRVKIGGKNNFQLFNT
                     VLHK"
     gene            1590..2132
                     /locus_tag="JBH85_12020"
     CDS             1590..2132
                     /locus_tag="JBH85_12020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HAU0946928.1"
                     /translation="MALTYKPGNGWGFMDINQYPSKVFKTEETGLLAKMIIKGLNSVP
                     PSTYIALDASIYTTTRNPQMYSLSTQLGQFKSSHVITPEIAFREQNGMGLAWIAARIG
                     DIALISELAKHQAELNKADNDGFTTAHIAALTGQPLVLDELIKLGADLSPSLISAIHW
                     KKNLLETRCCFSNEFISAVS"
     gene            complement(2149..2418)
                     /locus_tag="JBH85_12025"
     CDS             complement(2149..2418)
                     /locus_tag="JBH85_12025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946929.1"
                     /translation="MTRSSFSLIASRSASVSSNCNSSISFWRFKSMSWLRHAITSLGN
                     GRPSIPFFCTIRPVGRSKMRFNHFIQITLNMIFIPHNNCQFSRRE"
     gene            2348..2644
                     /locus_tag="JBH85_12030"
     CDS             2348..2644
                     /locus_tag="JBH85_12030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946930.1"
                     /translation="MLELQFEETDALLEAIKENEERVIGRKYYIDFIDEHKESYTNVM
                     WHISNPVKEELFQNEAQLRHSGLSTTVLYGMSWATSFLSSCYRFLTPKRPTRIS"
     gene            2652..3314
                     /locus_tag="JBH85_12035"
     CDS             2652..3314
                     /locus_tag="JBH85_12035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946931.1"
                     /translation="MPQTLDSQSKALFKKLLQEHKDSLKKEMARSEQFITNINKKLFP
                     ESEEMLPLFSTLSSKNLQLLPIYEFRIMKSRLAEDSDILKEPIDAQNLMHKKSSMSIL
                     RIPATEREENIYAVFQMLECPLMCNEDSLIPKILKEIKAIIKEIDPQEEQSISDALRL
                     IRNVIKDGARQERPLVAEVLKIFDATGSLNFRQIRNSLEHLPGLNEFSLSSRRPLSGH
                     ST"
     gene            complement(3347..3835)
                     /locus_tag="JBH85_12040"
     CDS             complement(3347..3835)
                     /locus_tag="JBH85_12040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HAU0946932.1"
                     /translation="MKIRAIFFMIAIFFPVTLFASNTTCPLSNGINVLTKKRILNICK
                     NGTVVKTFKVALGYKGVGKKKAGDNKTPIGLYGLAHPRKSNQFKVFIPILYPTKKQLA
                     AGYSGRDVGIHGPAQTSNLFGWLNNLPGSTRGCVAVGKNNYIEYVANWVKANPGAKVL
                     II"
     gene            4313..>5810
                     /locus_tag="JBH85_12045"
     CDS             4313..>5810
                     /locus_tag="JBH85_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HAU0946933.1"
                     /translation="MMNESSTEKKNELSLSFAALGVVFGDIGTSPLYAFGQVIKYFPI
                     NDHNIYGILSLIFWSLIIIVSIKYLVIVFRADNDGEGGIIALAGLIRQKIKKPGGWLL
                     FITLVGIGLIIGDGILTPAISILSAVEGLESLSPNLAKYVLPVTLIILFFLFKMQSIG
                     TGKIGIYFAPVMLIWFITIGVLGFLQIIQNPKVLMAINPYYAIYFFMIHKYFALFILG
                     GVFLVMTGGEALFADLGHFGKKAIRTGWFAVALPALLLCYFGQGAFVLMHIEYIKYPF
                     FSLSPDWFLPVMIILATIATIIASQAIISAAFSILKQASLLNLIPRLKIIYTSKFEKG
                     EVYLPLINFILALGTCSLVVIFKSSSNLADAYGIAVNLDMLITTVLVGIIAYYCWNWH
                     AFKVMIFPLILVIELAFFAGNIPKLLTGGWIPILIAFLGFVVMYTWHCGFEKLRELHH
                     RDALMDAFIIDELNQNKISRQSGMGLYIIDPYDCEGESLLHHLRLNRIF"
BASE COUNT         1822 a          959 c         1122 g         1907 t
ORIGIN      
        1 tgaatttgtc actttatctc agtgagtgct gaatgcaaaa ggccaatgca aagattcaaa
       61 atataaatga aataatgttt tcagatcgcg taatgttact aaataaaaat ttattagtga
      121 gcattcctgc aaatttttta tgcgcattaa ttatttatat tgatttcaat aaaacaacaa
      181 cagatcaaga aatgctctca gtatggttta tggttggagt aacagtattt gttctccatg
      241 gaggtttatt tttatttaat tattatcgtt ccttgccatc caaatacctt ttaaaatggt
      301 taataagcgt cactgcgatt tatggggctc tatggggaat agcaggttct gttcttattc
      361 ctcaaaatga tctgttaaat caaatgattg tcataattat aattattgga atcgcatcag
      421 gtggattaca tattcttcag cccagttttt tagcaagtct attatttttt acattaaccc
      481 ttattcctct atgtgtctgg ttttttcagc aaagtacact taactattgg ttccttggaa
      541 ctgcattgct gatttacttt tgttttttat taattatatc ctggatggga tatggacttc
      601 ttaataagaa ttttaaatta cgttatgaga atttggattt aattaataaa ttgtatgcaa
      661 ttaacgctaa tttggaggaa agtgagttac gtttccgttc cgcatttaat tctgctgcta
      721 ttggtatggc tatagtttct ttggagggga tgtggttaaa ggttaatcaa tcgctttgtc
      781 agattgtagg atactcagaa gaagaattat tggaaactaa ttttcaatcg atcactcatc
      841 cagaggattt agagctcgat ttgggttatg tgaggcaatt attagagggg gatataagat
      901 tctatcatat ggaaaaacgc tatattcaca aaaatggtag tgtcatttgg attttactca
      961 gtgcttcttt aattcgagat ctcgacaata aaccactcta ttttatctcg caaattcaaa
     1021 acattgatgc tcaaaaacga gcagagcaag aacttcaaca catcgcatat catgacactt
     1081 taactggttt gggaaataga aagctattag agttatcatt tgaccaggca ttagctcatg
     1141 cgaaacgtca ccaaacgcaa attgctatta tgtttatgga tttggattat tttaaaaatg
     1201 tgaatgacaa attgggtcat gatattgggg atcttttatt agttgagatt gggaaaagat
     1261 tacagacgat tttaaggtct actgatctaa ttgtcaggca tggtggtgat gaattcatta
     1321 tcgcgcttac tgaattatcc aatgtaaatc aagttataga aatagcaaat aaaattctaa
     1381 ttgctgtaag caagcctatc acaatcaaac gttatggtat ttcaattaca ggcagtattg
     1441 gtataagtat ctatccatat gacggcgatg attcagacac attaattaga aaagctgatg
     1501 aagcattata tagggtgaaa atagggggaa aaaataattt tcaattgttc aataccgtgt
     1561 tacataagta agactctctt gatcatactc tggcattgac ttataaacct ggtaatgggt
     1621 gggggtttat ggatattaat caatacccct ctaaagtttt taaaaccgaa gagacaggat
     1681 tacttgctaa aatgataata aagggtttga attcagtccc gccttccact tatatcgctt
     1741 tggatgcatc catttacacc acaacaagaa acccacaaat gtattcatta agcacacaat
     1801 tgggtcaatt taaatccagt catgtaatca ccccggaaat agcattccgg gaacaaaatg
     1861 ggatgggttt agcctggatt gcagcacgaa taggagatat tgcacttatc tcagagcttg
     1921 cgaagcatca ggctgaactc aataaggcag ataatgatgg ctttaccacg gctcatatag
     1981 ctgcattaac aggtcaacct ttggttcttg atgaattaat aaaattaggt gctgatctaa
     2041 gtccttcctt aatttcagcc attcattgga aaaaaaacct acttgaaaca agatgctgtt
     2101 tctcgaatga attcatttct gcagtttcat aaaggaaaac aagaggtgtt actctcgcct
     2161 ggagaactgg cagttattat gggggatgaa aatcatattc aacgttatct ggataaagtg
     2221 attgaacctc attttagatc tgccaacagg gcggattgtg cagaaaaaag gaatactcgg
     2281 gcggccattg ccgagggaag tgattgcatg tcttaaccag ctcattgatt taaaacgcca
     2341 aaaggaaatg cttgagttac aatttgaaga aacagacgcg cttctggaag caatcaaaga
     2401 aaatgaggaa cgcgtcatag gcagaaaata ttatattgat tttattgatg agcacaaaga
     2461 gtcctatact aatgtcatgt ggcatatatc caaccctgta aaagaagagc tgtttcagaa
     2521 tgaagcacag cttcgtcact caggactttc aactacggta ctttatggca tgagttgggc
     2581 gacgtcattc ctttcctcct gctaccgttt tttgacaccc aagcgtccaa caagaatatc
     2641 ttgactcttt catgccccag actttggata gtcaaagtaa agccttgttt aaaaagcttt
     2701 tgcaagagca caaggatagc ctaaaaaaag agatggccag gtccgagcaa tttattacta
     2761 atatcaataa aaaattattc cctgagtcag aagagatgct ccctctattc agtacgttgt
     2821 cgtcaaaaaa cctgcagcta ctgcctatat acgagtttcg tataatgaaa agcagacttg
     2881 cagaagacag tgatatacta aaagagccta tagatgcaca gaacttgatg cataaaaaat
     2941 catcgatgag tattctaaga attccggcaa ctgagcgtga agaaaatatt tacgcggtat
     3001 ttcaaatgct agagtgccct ctaatgtgta atgaagacag tttaattccc aagattttaa
     3061 aagaaatcaa agcgattata aaagaaatag acccacaaga agagcaatca attagtgatg
     3121 cgcttcgcct gattcgcaat gtgataaaag atggggcccg acaagagaga cctttagttg
     3181 ctgaagttct aaaaatattt gatgctacgg gtagccttaa ttttagacaa atacgcaatt
     3241 cgttagagca cttacctggt ttaaatgaat tttctttatc atcaagacga ccactatcag
     3301 ggcattctac ataaaataaa taggcggtat caaatttcgt ctcaatttaa ataattaaaa
     3361 ccttagctcc aggattggct tttacccaat ttgccacata ctcgatgtag ttgtttttgc
     3421 caacagcaac acatccacga gttgagcctg gtaagttgtt taaccaacca aataaattgg
     3481 atgtctgggc tggtccatgg atcccaacat ccctacctga atatccagca gctaattgct
     3541 ttttagtcgg atagagaatt ggaataaaga ctttaaattg attggatttt cttggatggg
     3601 ctaacccata taaaccaatt ggagttttgt tatccccagc ctttttttta ccaacgcctt
     3661 tgtacccgag cgctacttta aaggttttaa cgacggtgcc gtttttacaa atatttaaaa
     3721 ttcgcttttt agtgagtaca ttgattccat ttgataaagg acaagtcgta ttactagcga
     3781 ataaagtaac tggaaaaaaa atagcgatca tgaaaaaaat tgctcttatt ttcatataaa
     3841 taggctaata ttgttgaagt tgggcaataa ttatcccaca atattgtttt tattcataga
     3901 cctggcaggc taaatcttat gtaaatatac gtagcttgaa agtctgttta ggaaaaaatc
     3961 aatttctatg gcgtgctctg aagaactctc cttcagaaat cttagttcga agccaagtat
     4021 tttagccatg acaaacttta aaataaagat ttgatgagac ggtgattaat gataactaag
     4081 aagatctgga acaattttaa aaaaaactga gaaaatatat caaaaaactt gaaagatgta
     4141 tgggcctatt gcttatgcaa tgaagaaagc attttacagt tggcgataga tagaaataaa
     4201 taattcacca ggcacaggat acttggagat aatgtttttt taatatcaga tagtactata
     4261 ctcaaaatag taattcataa aggatcttaa attatattgg gagtaacccc ggatgatgaa
     4321 tgagtcttca acagagaaga agaacgagct cagcttatca tttgcggctc tgggggttgt
     4381 ttttggtgat ataggaacaa gtcctcttta tgcatttggc caagtaataa agtattttcc
     4441 aatcaatgac cataatattt atggtatttt atcgctcatt ttttggtcgc tgatcattat
     4501 agtcagtatt aagtatctgg taatcgtgtt tcgtgctgat aatgatggcg aaggcggtat
     4561 tatagcttta gcagggttga taagacagaa aataaaaaaa ccaggaggct ggcttttatt
     4621 tattactctt gttggcatag ggcttatcat tggtgatgga atattaactc cagcgatatc
     4681 catattaagt gctgttgaag gtctggaatc tttgtctccc aatttggcca aatatgttct
     4741 tccagtgaca ttaattattt tatttttcct ctttaagatg cagagcatag gtactgggaa
     4801 aattggtatt tatttcgctc ctgttatgct tatttggttt attaccatag gcgttttggg
     4861 ttttttacaa attatacaga accccaaagt actgatggca ataaatcctt actatgcgat
     4921 ttattttttt atgatacata aatactttgc tctttttata ttgggagggg tgtttttagt
     4981 aatgactggt ggtgaggctt tatttgctga tttagggcat tttggcaaaa aggccattcg
     5041 aacagggtgg tttgctgtgg cgcttcccgc attactttta tgctattttg gccagggagc
     5101 gtttgtattg atgcatatag agtatatcaa atatcccttt tttagtttat cgccagattg
     5161 gtttctccct gtgatgatta ttttggctac cattgcaacc attattgcat cacaggcaat
     5221 tatttcagcg gcattttcga ttttaaagca ggcgtcactg cttaatctga ttccacgtct
     5281 taagattatc tatacgtcca aatttgagaa aggcgaagta tacttgccac ttatcaattt
     5341 tattttagct ttaggtacat gttcacttgt tgtgattttt aaatcatcat ctaatcttgc
     5401 cgatgcttac ggcatcgctg ttaatttaga tatgcttatc acaacagttt tagttgggat
     5461 cattgcttat tattgctgga attggcatgc gttcaaggta atgattttcc ctctgatatt
     5521 ggttattgaa cttgcattct ttgctggaaa tatacccaag ttgttaactg ggggttggat
     5581 ccctatttta atcgcgtttc taggatttgt agtgatgtat acctggcact gtggctttga
     5641 gaaactacgg gaattgcatc atagagatgc tctgatggat gcttttatca ttgatgaatt
     5701 aaatcaaaat aaaatttcaa gacaatccgg aatgggatta tatattatcg acccctatga
     5761 ttgtgaaggg gaaagccttc ttcaccatct tcgcctcaac cgtatttttt
//
LOCUS       DACVWI010000172         5753 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.172, whole genome shotgun sequence.
ACCESSION   DACVWI010000172 DACVWI010000000
VERSION     DACVWI010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5753
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.172"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(199..876)
                     /locus_tag="JBH85_12050"
     CDS             complement(199..876)
                     /locus_tag="JBH85_12050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HAU0946934.1"
                     /translation="MNTLFTLISTVLLTSNITSSTPLFAKPGTDINTQVQHLSHKAPQ
                     LNKKVLKLALTAYKNASKRGAVKKPVLTVIDYSLPSNKQRMWVFDLRNERLLYNTYVA
                     HGKNSGVNVARSFSNRESSKQSSLGTYITKNTYIGHKGYSLNLQGLDRGFNDNAYNRR
                     VVIHGAWYVEPEFIKKAGRAGLSWGCPAIAQTLAKPVINTIKNGSVVFAYYPDKKFLS
                     HSGYLVA"
     gene            1421..4585
                     /gene="putA"
                     /locus_tag="JBH85_12055"
     CDS             1421..4585
                     /gene="putA"
                     /locus_tag="JBH85_12055"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HAU0946935.1"
                     /translation="MENIMLEKQSIHLPEGLRAAINKAYRMDELSLITELSEQAALDP
                     QQMMAIKTSATKLVQSVRSERKKSTGIDSFLTEYALSSDEGIALMCLAEALLRVPDNA
                     TIDNLIKDKLAGGDWGAHRGQSESFFVNATTWALMLTGKVLTPEKAENTLTKALLKLV
                     NRSSEAVVRKAVDKAMRIMSKQFVMGRTINEALARAKKKEDRGYRYSYDMLGEAALTS
                     ADAARYFEAYKEAIISIGEKADKHSDVYRRPGISIKLSALHPRYSEFQYERVMAELPP
                     KLLALSRLAKDYGIALTIDAEESERLDLSLDVIEKVFTDESLQGWNGFGLAVQSYQKR
                     AFYVLDWVAALARSKQRRIMVRLIKGAYWDSEIKKTQMQGFSEYPVFTRKVFTDVSFQ
                     ACAKKILTMTDAIYPQFATHNAYSVAMILNLVGGYRDFEFQCLHGMGNELYEQIVPAN
                     CYGIPCRIYAPVGSHEDLLPYLVRRLLENGANSSFVNRIVDDKAPISELVEDPVAKSR
                     SLLDKINKNIPLPEDIFLPVRKNSKGFDFTNRLERALLQQELAKIESKEWQASPMIAG
                     RKLSRDLLQTVMSPQQPAYAIGSVQQATLDDVEVALNQAKLAFELWSKKPVEERASCL
                     NRFADLLQANMAELMVLTCREAGKTWSDGIAEVREAIDFCRYYAKKAQELMSSPQRFN
                     GYTGELNELSLHPRGTILCISPWNFPLAIFTGQVVAGLVTGNCVIAKPAEQTPLIAAY
                     AVKLMHQAGIPEGVIQLIPGAGETIGAALVADKRIKAVLFTGSTDTANLINRTLATRG
                     GEIIPLIAETGGQNAMIVDSSALLEQVVVDAVTSAFGSAGQRCSALRVLYVQEEVYPR
                     TVELLKGAMAELVVGDPQWLSTDVGPVIDKEALSILKNHVENMRKHHEILYQCTVDDE
                     ALSGYFMPPTAIAIDSISALEKEVFGPILHVIQFKRKDLDKVINQINQTSYGLTLGIH
                     SRINETVDYIRQRVHAGNCYVNRNMIGAVVGLQPFGGEGLSGTGPKAGGPNYLIRLCH
                     ERTYTVDTTAAGGNASLMSIPEEG"
     gene            4751..5315
                     /locus_tag="JBH85_12060"
                     /pseudo
     CDS             4751..5315
                     /locus_tag="JBH85_12060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005506484.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5517..5726
                     /locus_tag="JBH85_12065"
     CDS             5517..5726
                     /locus_tag="JBH85_12065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946936.1"
                     /translation="MHQWVSWWTRTANDWTKHNLLTWFIDTCWDASAKEVARMLLHRL
                     DGAQAALANSDHSYVNQALVLVQAQ"
BASE COUNT         1775 a          988 c         1263 g         1727 t
ORIGIN      
        1 agtattgagt gaaggtgtga tttaacacct tgcgcttccc ctattcaatt gctaaatttt
       61 aatcaagact tatatggata tgagtcgtgc aaatggattt gcaattagat ggatctgatt
      121 tgtcaggatg acaataagaa cgcaagttct tatacggatg actgcgaaaa gccagggctg
      181 agtccctggc ttactttttt atgctacaag ataacctgag tgagataaaa actttttatc
      241 agggtaataa gcaaaaacaa ccgaaccatt tttaatggta tttatcaccg gttttgccaa
      301 ggtttgtgct atagctgggc agccccagga taaaccagcg cgacctgcct ttttaataaa
      361 ttcaggttca acataccacg cgccatgtat cacaacacgt ctattgtatg cattatcatt
      421 aaagcctctg tccaggcctt ggaggttcaa ggagtagcct ttgtgtccga tataggtgtt
      481 ttttgtgata taggtaccta agctggattg tttgctggac tctctgttag aaaaactccg
      541 tgcaacatta actcccgaat ttttaccatg ggctacgtac gtattgtata atagacgttc
      601 attacgaaga tcgaataccc acatacgttg cttatttgaa ggcaaggaat aatcaattac
      661 tgtgaggaca ggctttttaa ctgctcctct cttactcgca tttttatagg ccgttaaagc
      721 aagctttaat actttcttgt ttaattgagg ggccttgtgg ctaagatgtt gtacctgggt
      781 gttaatgtct gttccaggct tggcaaataa tggagtgctg gatgtgatat tacttgttag
      841 tagtacagtt gagattagag taaataatgt attcatactg ctcctttctt cttgttaaat
      901 caccattatt ggttattaca aaagatggtg attatattaa caaataagtt aattgtaaat
      961 ttataagggt ttaagttgcc cattaggtaa aaatattaat catatcatga ggttaattac
     1021 aggctgaaaa agagaatgga gcaaaatgtt ttcaataagt tcactaattg ctctatatgt
     1081 ataaccaaaa aaacatctta ttgattataa ttagatcttg ttggttaaat ttagttctat
     1141 ttttctgggt taaaaagcat gtttttactt tatcgaacag gattgtcgtc atataatatg
     1201 ccacaaaaag ggggttgatg cattgatttt atatagccca atttattgct cgatactatg
     1261 atttatatct gaaatattgc cttgtcgtag agaggggcat ggcaaataag ccagtgtaag
     1321 atatcataac cggatttttt cattgttata ataatgaatt taatttttgt cttatatggt
     1381 aaaaatttaa taactatttt tttcaattac cactttagtc ttggagaaca ttatgctgga
     1441 aaagcagtcc attcatttac cggaaggatt aagagctgct attaataaag cttatcgcat
     1501 ggatgagctt tctttaatta cagagcttag tgaacaggca gcacttgatc ctcagcaaat
     1561 gatggcaatt aaaaccagtg ctacaaaatt ggttcaatca gttcgtagtg agagaaagaa
     1621 aagcacagga atagattctt ttttaacgga gtatgcctta tcaagtgatg agggaattgc
     1681 cttaatgtgt ctggcagaag ctttattacg cgttcctgat aatgccacca tagataactt
     1741 gattaaagat aaattagctg gcggtgattg gggggcgcat cgtggacaga gtgaatcatt
     1801 ttttgtaaat gctactactt gggctttaat gctaactggt aaagttttaa ctcctgaaaa
     1861 agctgaaaat acattaacca aagctttact aaaattggtt aatcgaagta gtgaggctgt
     1921 tgttagaaaa gcagtggata aagccatgcg aattatgagc aaacaatttg tgatgggacg
     1981 taccattaat gaagcgttag ctcgagcgaa aaaaaaggaa gacaggggat acagatattc
     2041 ttacgatatg cttggtgaag ctgccttaac atctgctgat gctgcaagat attttgaagc
     2101 ctacaaggaa gcaatcattt caattggaga gaaagctgat aaacattcag atgtatatag
     2161 acgccctggt atttccatca aactttctgc cttacatcca cgatatagcg agtttcagta
     2221 tgagcgtgtc atggcagaat taccccccaa attattagcc ttgtctcgtt tagcaaaaga
     2281 ttatggtatt gctttgacaa ttgacgccga ggagtcagag cgtttagatc tttcgcttga
     2341 tgtgatagag aaagtgttta ctgatgagag tttacaggga tggaatgggt tcggtttggc
     2401 cgttcaatcc tatcaaaaaa gagcttttta tgtcttggat tgggttgctg ctttagcaag
     2461 aagtaagcag cggcgtatta tggtcagatt gattaaagga gcctattggg atagtgaaat
     2521 caaaaaaacg caaatgcaag gcttttctga atacccggtt tttacccgta aagtatttac
     2581 tgacgtgtca tttcaggctt gtgcaaaaaa aatcctgact atgaccgatg ccatttatcc
     2641 acaatttgcc acacataatg cttattctgt agcaatgatt cttaatttgg taggaggtta
     2701 tagagatttt gaatttcaat gtctgcatgg tatgggtaat gaactttatg aacagattgt
     2761 tccagcaaat tgttatggta ttccatgccg tatttatgca ccagttggta gccatgagga
     2821 tttattaccg tatttagttc gacgattact ggaaaatgga gcaaactcat cttttgtcaa
     2881 tcgcatagtt gatgataagg cacctattag cgagttagtg gaggacccgg tagctaaatc
     2941 aagatcgtta cttgataaaa taaataaaaa tataccattg ccagaggata tctttttacc
     3001 cgtacgaaaa aattctaaag gctttgactt tacaaatcga cttgaacgcg cattattgca
     3061 gcaggaactg gcaaaaattg aatcaaaaga atggcaggca agtcctatga ttgctggtcg
     3121 aaaattatcc agggacttac tgcaaacagt tatgtcccca cagcagccgg catatgctat
     3181 tggctcagtg cagcaagcca cacttgatga tgtagaggtg gcattaaatc aggcaaaatt
     3241 ggcttttgaa ttgtggagca agaaaccagt agaagaacgc gcttcttgtc taaatcgatt
     3301 tgcagattta ttacaggcca atatggcaga gctcatggta ttgacttgtc gggaagctgg
     3361 taaaacctgg agtgatggca ttgctgaagt aagagaggct attgattttt gtcgatacta
     3421 tgccaagaaa gctcaagagc ttatgagtag ccctcaacgc tttaatggat acactgggga
     3481 actaaatgaa ttgagtttgc atcctcgcgg gacaatattg tgtattagtc cctggaattt
     3541 tccattggct atatttacgg gacaagtcgt agccgggctg gttacaggca attgtgttat
     3601 tgcgaaaccg gcagaacaaa cgccactaat tgcagcctat gctgtgaagt taatgcatca
     3661 ggccggtatc cctgaaggag taattcaatt aattccaggc gctggagaga ctattggcgc
     3721 tgctttggtc gcagataaac gaattaaagc agtattattt acaggctcga ctgacacggc
     3781 gaatttgatt aatcggacgc tagctactcg aggtggtgaa atcattcctc taattgctga
     3841 aacaggtggt caaaatgcaa tgattgtcga ttcttcagca ttattggaac aagtggttgt
     3901 tgatgctgtc acttctgcct ttggcagcgc ggggcagcga tgctcggcac ttagggtatt
     3961 gtatgtgcaa gaggaagtgt atccaagaac tgtagagcta ttaaaaggtg ccatggctga
     4021 gctagtcgta ggggatcctc aatggttatc aaccgatgtt ggccctgtta tagacaagga
     4081 agcattatct atattgaaaa atcatgtcga aaacatgaga aaacatcatg aaatattata
     4141 tcaatgcact gttgacgatg aagctttatc aggatatttc atgccgccaa cagctattgc
     4201 aattgatagt atcagcgctt tggaaaaaga agtatttggg ccaattttgc atgtgattca
     4261 gtttaagaga aaagatctgg ataaggtaat taatcaaatc aatcaaacta gctatggttt
     4321 aacactggga atacacagcc gaattaatga aacagttgac tacattaggc aaagggttca
     4381 tgcagggaac tgttatgtaa atcgtaatat gattggcgca gtagtaggtc tacagccttt
     4441 tggtggtgaa gggttatctg gcacaggacc caaggctgga ggccctaact atttgattcg
     4501 actttgccat gagcgtacct atacagttga tacaactgct gcaggaggca atgccagttt
     4561 aatgtctatc ccggaagaag gttagcagta ttagaaattc acttaagaga ataataaaat
     4621 cttaagtgaa tttattacag gagatctgcc cctgtctgga acggcaatat ttggttgttc
     4681 ttgtatgagg gctgatctat accgctgatc tatgaaaatg cttgcttttt tgatctgaga
     4741 agatcatgct atgccgcatg aaaagaatac acttatcacc agaagaaaag aagggctgga
     4801 agcaaggaat agttgttgct ctaacggtaa ggagcgtgat cgtataaaag ctgttttatt
     4861 gcgttatatt attgcctatg tagagaagaa atggtctatt atctatagtg ttccagggat
     4921 gaataaatgg atgcatcgta atggctttag ctacaagaaa cctaaaggtc atccacataa
     4981 agcgaataga gaacagcagg agcagtctga taagagcaaa ccatggttca aaaggaatca
     5041 ttcatttaat acttgaccaa gccccttatc atcgagcaga taaagtcaaa gaaaaggcta
     5101 aaaaattagt tattcactta aactatcttc ctccttatag tcccaattta aaccctatcg
     5161 aacgattatg gaaagtcatg aatgaaaagg tcagaaacaa tcgatttttc aacagtgcta
     5221 aggattttag aagagaaatt gaacggtttt ttactgaaat actgcctgat atcggtgcat
     5281 cattaggaca aagtatcaat gataatttcc agtgactttg acattggagc atcatgaaac
     5341 gctgggattt tgtagagatg acgaataccg gtagcaagct ttttgcaagc acccataagc
     5401 gcaagaagtt tgcccatcac aaacttaatg gctcgtacta tcagtgaatg gttaactcaa
     5461 ggggtgcaat ccattatcaa tggaacctat acacctccct tcgagccatg agttacttgc
     5521 atcaatgggt ctcctggtgg acgcgaacag caaatgattg gacaaagcat aacttattaa
     5581 cctggtttat tgacacctgt tgggacgcat ccgcgaaaga agttgcaagg atgttgcttc
     5641 accgcctcga tggagcacaa gcggctttag ctaactcgga ccactcgtac gtaaatcagg
     5701 cacttgttct tgttcaggct caataatatt tgcttttgcg tcttcaacaa gcc
//
LOCUS       DACVWI010000173         5738 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.173, whole genome shotgun sequence.
ACCESSION   DACVWI010000173 DACVWI010000000
VERSION     DACVWI010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5738
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.173"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1309
                     /gene="ceg23"
                     /locus_tag="JBH85_12070"
     CDS             <1..1309
                     /gene="ceg23"
                     /locus_tag="JBH85_12070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg23"
                     /protein_id="HAU0946937.1"
                     /translation="KDKKVISLQERVENAVDVSGAFDNCFFHNFALYLLTNNLPLPDD
                     LFHFKSIINRNSKAEQLFEFFHNPESLNLFSILDKENDVSEPSGYLFEKSLILGFLLR
                     EWFPTQLVNNSAVKAEMLEGEKGVFSAFKNYKEYRSFMSKEELKSTEFGALYEANEAF
                     LEYFYNRSESTLINKDSPFEKYFVGSSSDEEAIKNYWDAEGYTLYCQHLAKPQVKLSY
                     IEIMTMMKVINQPLTIYDRSTSSIVAEYVNPKVNLPDFEVAIDALQGHYFLLKTEETE
                     KELEEYERSYAQYKRDRSEILAHSDKPVSSLLVRATCPKGHLDEDPFIALIESLSEIN
                     SLSQIDTNLKNENTDIPNCNFLLKVGASVVGTSSALITLMGIAILSGQYDPGNSLAEE
                     ALATTVVSSIVGLGYGLYSFFSSSPKVSERDSTNGLSQKLKIN"
     gene            1479..1919
                     /locus_tag="JBH85_12075"
     CDS             1479..1919
                     /locus_tag="JBH85_12075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HAU0946938.1"
                     /translation="MWLLERNMSAKKKSITHDRLLTEVELELMNIIWSLDKVTIKEVV
                     SHLPKERPLAYTTVATVLKVLEQKGFLECQKNSYAHVFTPIVTKSDYESTCIDHMVAN
                     VFDGEPRALVQRLLLARKLQHDDIQAIEEALKQLNAGEKQPEVM"
     gene            1919..3829
                     /locus_tag="JBH85_12080"
     CDS             1919..3829
                     /locus_tag="JBH85_12080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HAU0946939.1"
                     /translation="MLLIEIVLTIHCLLLLSSLFIGRAWLANKPSFKLKLLRFLLASC
                     IISPIIVHCVDSDQKPERQNYVSFDALQQYAKQSIFKTESSKFNHGSSSAFTSMNVNY
                     CQLLSVMFFLIVLFRSYHLLSGLGRLKLMLTEAIPYRTSGKLVIKVSHHCHVPFSILL
                     FNKAYIVLPVSIFSSAMNVRIAIAHEGQHHRNGDCSWAYFIEIIRIIFFGNPGVTQWF
                     RVLADLQELSCDEVLVGHQKISAHDYGHCLLQVAEAVSQCSLASNREIACTVGMALNK
                     ENEDCKFIIRRISMLTAYSPNASRPLLLGIVFAGFSILSPICVAYSTAGSLTSSRAKE
                     VDISHLDPRMQQIVEKQITTAVKQYHAKSGVIAIADPQTGNIIAFAESSKNKGLESWK
                     SRIFSPGSTIKPFIAAAAINSGNSSETKNYDCHSPYYIAGKTFTNYNSNVESASLADA
                     IAKSINVCLIRVSQEAGVPVIRKKLTEFGFDMNSWWQADQSDDLQLAMAALGENIPVT
                     IESLIKSYAILANKGHSFDRGNSAIISETSTNSINHMLENAVTNGTGKLAVIPGVSVA
                     GKTGTVIENNDKYLALFAGYVPADNPRYVLLVVIEEGYFSKNGKTLVSGGELAAPVFR
                     NVAMDALSSANR"
     gene            3879..4679
                     /gene="blaOXA"
                     /locus_tag="JBH85_12085"
     CDS             3879..4679
                     /gene="blaOXA"
                     /locus_tag="JBH85_12085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014845076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /protein_id="HAU0946940.1"
                     /translation="MKKIIIFLCTGLLFCVSTWAQGTCFLAKENQTVLKREGNDCDQR
                     YSPASTFKIALSLMGFDSGILKDELHPEWPYKKEYELYLNVWKYPQNPHTWIRDSCVW
                     YSQALTRQLGMKRFKGYVDAFHYGNQDVSGDRGQNNGLTHAWLSSSLSISPTEQIQFL
                     QKIIYKKLPVSQKAYIMTKNIMYIQELPGGWKLYGKTGTGRQLTKDKSQKLPLQHGWF
                     VGWIEKDERVITFAKHIADSKENNTFASFRAKNDALIQLFNLINELEK"
     gene            complement(4804..5676)
                     /locus_tag="JBH85_12090"
     CDS             complement(4804..5676)
                     /locus_tag="JBH85_12090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HAU0946941.1"
                     /translation="MDKNLKLMFLLVYVISLVLLSACCFGAPNSIEKQLKIIIANKAY
                     TLSDLKKQFKTIRVSIPFNPAYNNVKKVYYAFDMNQILTKLLAVDLQKNNVDQVLLAQ
                     TADNYMSQTPLLYFTTKGQAYLAYQEAPETISDKDITKDGRWSYINQHGKKDNPGPFY
                     IVWDNTSTYPAGWPYQVISIQIVNKKDLAFSRFLNPLHESESIKNGHHIFNNMCSTCH
                     SIFYKGAQGRAPDLGKVTSYLTPSDISKLVKHGRGYMPPIGKNLSTEEINDLIKFLIW
                     VNRQSSKLKCEIND"
BASE COUNT         1801 a          999 c         1114 g         1824 t
ORIGIN      
        1 aaaggataaa aaagtaatat cacttcaaga aagagtagaa aatgcagttg atgtttcggg
       61 ggcttttgat aactgctttt tccataattt cgcactttac ctgttaacga ataatttacc
      121 acttcctgat gatttatttc acttcaaatc aatcattaat agaaatagta aggcagaaca
      181 attatttgaa ttttttcata acccggaatc attgaattta ttttctatat tagataagga
      241 aaatgatgtt tctgaaccct ctggttatct ctttgaaaag agcttgattt taggatttct
      301 gcttagggaa tggttcccaa ctcaacttgt taataattca gcagttaaag cggaaatgct
      361 ggaaggtgag aaaggggtat tcagtgcttt taaaaattat aaagagtatc gctcatttat
      421 gtcgaaggaa gaattaaaat caacggaatt tggtgcgtta tatgaagcga acgaggcttt
      481 tttagagtat ttttataatc gctctgaaag tactttaata aataaggatt caccttttga
      541 aaaatatttt gttggctcgt cctcagatga agaggcaatt aaaaattatt gggacgcaga
      601 agggtataca ttatattgtc aacatttggc gaaacctcag gttaaattat cttatattga
      661 aattatgacc atgatgaagg tcatcaatca gccacttaca atatatgatc gttctacttc
      721 ctcaattgta gccgagtatg tcaacccaaa ggtcaattta cctgattttg aagtggctat
      781 tgatgctctt caagggcatt attttctttt aaaaacagag gaaacggaaa aagagttaga
      841 agaatatgaa agaagttatg ctcaatataa aagagataga agtgaaatcc ttgcacactc
      901 cgataaacct gtttcttcct tattggttcg agctacttgc cccaaaggtc atttggatga
      961 agatcctttt attgcattaa ttgaaagcct ttccgaaata aacagcctta gccaaattga
     1021 tactaatttg aaaaacgaga atacagatat tcccaattgc aacttccttt taaaggtagg
     1081 tgcttctgta gttggtacct cttctgcgct aataacttta atggggatag ccatattatc
     1141 tggccaatat gatcccggaa acagtctggc tgaagaggca ttagctacta ctgttgtatc
     1201 cagtattgtg ggtttaggtt atgggcttta tagcttcttt agttctagcc ccaaggtatc
     1261 agagcgtgat tctaccaatg gattatcgca aaaacttaaa ataaactaac ctcctgaatt
     1321 agcaaatatt gtctgtaagc cgatcgtgtt gatattagat atcaacacga ttgcgccttg
     1381 agtaaactgt tctcacgtgt agagaagtat tttccccatg actattttaa ctctactatt
     1441 tttatagtag gatactacta taaaaatagt agtagcgtat gtggttattg gagagaaaca
     1501 tgtcggcaaa aaaaaaatcg ataactcatg atcgacttct tacagaagta gagcttgaat
     1561 taatgaatat tatctggagc cttgataagg taactattaa ggaggttgtt tcacatctgc
     1621 ctaaggaaag gcctttggct tatacaaccg tggcaacagt actaaaagtg ctggaacaaa
     1681 agggatttct tgagtgtcaa aaaaattcct atgctcatgt ttttacacct atagttacaa
     1741 agtcagatta tgaaagcact tgtattgatc atatggttgc caatgttttt gatggggagc
     1801 cccgagcact tgtccaaaga cttttgttag ccagaaagtt acagcatgat gacattcaag
     1861 ccattgaaga agcacttaaa caattaaacg ctggtgaaaa acagccagag gtgatgtaat
     1921 gttattaata gaaatcgtat tgactattca ttgcctgctt cttctcagtt cactatttat
     1981 agggcgtgcc tggctagcaa ataaaccatc atttaaattg aaattactcc gttttttatt
     2041 ggccagttgc attatttcac caataatagt tcattgtgta gactctgatc aaaagcctga
     2101 acgacaaaac tatgtatcat ttgatgcttt gcaacagtat gcaaagcaat ccatatttaa
     2161 gacagaatct tcaaaattta atcatggatc gtcttctgcc tttacatcaa tgaatgtgaa
     2221 ctactgtcaa ctcttaagcg tgatgttttt tttaatcgtc ttgtttcgta gttatcactt
     2281 gttatcaggt ttaggtcgct tgaaattgat gttgactgaa gcaatcccat atcgaacttc
     2341 cggaaaatta gttattaagg tttctcacca ctgccatgtt cctttctcaa tattgctatt
     2401 taataaagcc tacatcgtat tgccagtatc catattttct tctgccatga atgtgaggat
     2461 tgctattgct catgaagggc aacaccatcg taatggagat tgttcatggg cctattttat
     2521 cgaaatcata cgcattatct tctttggaaa cccgggtgta actcaatggt ttcgtgtttt
     2581 agcagattta caggaattgt catgtgatga agtattggtt ggacatcaaa aaatttcggc
     2641 acatgactat ggtcactgtc tattgcaagt ggcagaggca gtatcccaat gctctctggc
     2701 atctaaccgg gaaattgcat gcacggtggg tatggctttg aacaaagaaa acgaagactg
     2761 caaatttata ataaggagaa tttcaatgct aactgcttat tcacccaatg catccagacc
     2821 tttgctatta gggatagtct ttgcaggatt ttctatcctg tctccaatct gcgttgccta
     2881 ttcaacagca ggatctttga cgagttccag ggcaaaagaa gttgatattt ctcatttaga
     2941 tcccagaatg cagcagattg tggagaaaca aattacgaca gccgtcaaac aatatcatgc
     3001 aaaatctgga gtaattgcaa tagctgatcc ccaaacaggc aatatcattg catttgctga
     3061 atcaagtaaa aataaggggc tagagagctg gaaatcacgt attttttcac ccggatctac
     3121 tataaaacct tttattgcag cagctgcaat caactctggg aatagctctg aaacaaaaaa
     3181 ttatgattgt cattcacctt attacatagc aggcaaaaca tttacaaatt ataattccaa
     3241 tgttgaatca gcttccttag cagatgccat cgcaaaatct atcaatgtat gccttatcag
     3301 agtttctcaa gaggctggag tgccggtaat ccgtaaaaag ctcactgaat ttggttttga
     3361 catgaacagt tggtggcaag cggatcaaag tgacgattta caactggcaa tggctgcact
     3421 tggagagaat atccctgtca caatcgaatc gctaataaaa tcttatgcca ttcttgctaa
     3481 caaaggacat tcatttgaca ggggaaatag tgccattatt tcagaaacaa gcactaactc
     3541 aataaatcat atgcttgaaa atgctgttac aaatggcact ggaaaactcg cagttattcc
     3601 tggtgtttct gtagctggta agacaggaac tgtaattgaa aataatgata aatatcttgc
     3661 tttgtttgcc gggtatgtgc cagctgataa tccgcgttat gttttattag tcgtgattga
     3721 agagggttat ttcagtaaaa atggaaagac attagtttcg ggaggagaat tggccgcacc
     3781 ggtattccga aatgtcgcaa tggatgctct gagcagtgca aatcgataac tagcttatgg
     3841 gtttgcatat ccatatattc aaaaatgttg aggttgttat gaagaaaata attatatttt
     3901 tgtgtacagg attattattt tgcgtctcta cttgggctca aggcacctgt tttttagcaa
     3961 aagaaaatca aactgtttta aaacgtgagg gcaatgattg cgatcaacgc tattcgccag
     4021 catcaacttt taaaattgcc cttagcctca tgggctttga ttctggaata ttaaaggatg
     4081 agttgcatcc tgaatggcca tacaaaaaag aatatgaact ttatctgaat gtatggaagt
     4141 accctcaaaa cccgcatacc tggatcagag attcctgtgt ttggtattca caggcattaa
     4201 ctcgacaatt gggcatgaaa cggtttaaag ggtatgtcga cgcatttcac tacggtaatc
     4261 aggatgtttc gggagacaga ggtcaaaata acggcttaac ccatgcctgg ctttccagct
     4321 cactttctat ctcacccaca gagcaaattc aatttctaca aaaaataatc tacaagaaac
     4381 taccggtgag tcaaaaagct tatatcatga ctaaaaatat catgtacatc caggagttgc
     4441 ctggtgggtg gaagctttat ggaaaaacag gaactggtcg gcagttaaca aaagataaaa
     4501 gccaaaaatt gcctttgcaa catggatggt tcgtaggttg gattgagaag gatgagcgtg
     4561 taattacctt tgcaaagcat attgcagata gtaaagagaa taacactttt gccagtttta
     4621 gagcgaaaaa tgatgctctg attcaattgt ttaacctcat taatgagttg gagaaataat
     4681 ctaagacatt gtcggagcag gattattctg ttccgattac ccaaatctgc caactatagt
     4741 cacacacatt ccaggagttg ctgctgcttg tcatcggtag ctacaaagtc ctaaattata
     4801 tccttagtca ttaatttcgc attttagttt ggatgattgt ctgttaaccc agattaaaaa
     4861 tttaatgaga tcattaattt cttccgtaga gaggtttttg cctatcggtg gcatgtatcc
     4921 tcgtccatgc tttacaagct tactgatatc agaaggtgtt aagtagctcg tcactttgcc
     4981 taagtctggt gcgcgtcctt gagcaccctt gtaaaatata gagtggcaag tggagcacat
     5041 attattaaaa atatgatgac cattttttat agactctgat tcatgcaaag gatttaagaa
     5101 acgagaaaaa gcaaggtctt ttttattcac tatttgaatc gaaataacct ggtatggcca
     5161 accggcaggg taggtgcttg tattatccca tacaatatag aaagggccgg gattatcttt
     5221 tttaccgtgt tgattaatat aactccagcg accatctttg gtgatgtcct tgtcagaaat
     5281 tgtttcgggc gcttcttgat aagcaagata ggcttgacct tttgtcgtaa aatacaacag
     5341 gggggtttga gacatatagt tatctgctgt ttgagctaat aatacctggt ctacattgtt
     5401 cttttgtaaa tctactgcca acaattttgt taaaatctga ttcatatcaa aagcataata
     5461 tacttttttc acattattat aagcaggatt aaaggggatg ctaacacgta tggttttaaa
     5521 ctgtttttta agatctgaca gcgtatatgc cttatttgca ataattattt taagttgttt
     5581 ttctattgaa ttgggtgccc caaaacaaca tgctgaaagt aatacaaggc taattacata
     5641 aaccagtaga aacattaatt ttaggttctt atccataagt ccttcttgtt ttttgaaaac
     5701 aattcagatt ttttctatcc tgacactagt tattatgg
//
LOCUS       DACVWI010000174         5736 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.174, whole genome shotgun sequence.
ACCESSION   DACVWI010000174 DACVWI010000000
VERSION     DACVWI010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5736
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.174"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(126..1379)
                     /locus_tag="JBH85_12095"
     CDS             complement(126..1379)
                     /locus_tag="JBH85_12095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HAU0946942.1"
                     /translation="MDYSIYLLFAALILCFLMTWGVGANDLANVMSTTMGSKAVTVRQ
                     AMLIAIIFEFAGAFLGGEGVTETMRDGIINTSQLSNEPLILIEGMLCVLFACTIWMNL
                     ASYLGVPVSITNALVGSMVGFGTIVLGPDAIHWNQVARIAIGWISSPLISGITAYALF
                     ISIQQTIFVKSNPLTKAKLYIPIYLFLIGFILSFITVFKGLNHFDIHLNLKQDLAVTL
                     ATSIIITILGMIFIKRIPEYHKIRRRERFIQVEKYFAVLMAMTACAMAFAHGSNDVAL
                     AVGPLSIVHSLVMHSNQIFDADNYPSWIILLGCVGVVTGFLMYGRKVIETVGSSITAL
                     TPSRAFAATLSAATTVVVATSTGIPVSATQTLVGAVLGVGLARGIGALNLIVIRNIFM
                     SWVLTLPAASMLTILSYKLLHALLG"
     gene            complement(1389..2060)
                     /locus_tag="JBH85_12100"
     CDS             complement(1389..2060)
                     /locus_tag="JBH85_12100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HAU0946943.1"
                     /translation="MGSIFNMFGPSPIKPIEQHIRKAHQCAKQLYPFFEAVLKNDWDT
                     ANKIKDKIISIEKEADLIKRDLRLHLPTGLFLPVARTDILELLSAQDRIANKAEDIAA
                     LIISRQMSIPKKLIPSFMPFLSRCLDASKQACTAINELDELLETGFRGSEVKIVEEMI
                     VKLDEIEHDCDERLADIRHKIFELEKELPAIDVIFLYKLVQWIGELADHAQTVGGRLQ
                     ILIAR"
     gene            2248..3012
                     /locus_tag="JBH85_12105"
     CDS             2248..3012
                     /locus_tag="JBH85_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/III secretion system protein"
                     /protein_id="HAU0946944.1"
                     /translation="MIKRWLLVILLISGNAFSQQMITKVIELNYLQADKVIQLIQPLL
                     QTDEKVSGSGQTLIVNVSPQTLTQIRNVLHKIDVPPVVFNITVYQGDPEWLSSQDGND
                     VVYSTQPQYEVQRSQSVKVMSGESAFVATGEQVPVVTSVGVGLLATGVSYEQHNIQNG
                     LLVHPVLQGSQVKLTVRRVREQENVESDQQFDNQQIDTTIMAPLNKWVPLGTAEGVQN
                     TDSSSTSYTAGRPFSQNSTLYIKVSVVKSTPSGTTK"
     gene            3315..3878
                     /locus_tag="JBH85_12110"
     CDS             3315..3878
                     /locus_tag="JBH85_12110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HAU0946945.1"
                     /translation="MAIISSLANHLLIAMPSLKDPNFERSVVYLCEHNEQGSVGLIIN
                     RPLQFPLSIVFEQLQIEPIRVEKNGLPLLFGGPVQPERGFVIHKQMGGWRSSLFLQDE
                     VTVTTSNDIIRAIAYDEGPKDVLITLGYAAWTEQQLEREIMSNTWLVCPYKSEILYEV
                     PFEERWEYAGLTLGIKMNQLSSDAGHA"
     gene            3862..4290
                     /gene="ruvX"
                     /locus_tag="JBH85_12115"
     CDS             3862..4290
                     /gene="ruvX"
                     /locus_tag="JBH85_12115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HAU0946946.1"
                     /translation="MLAMPRGVYLGFDFGYKRIGVAVGQRLTCSASPLSTIEAKAGIP
                     DWNTIQKVITQWNPQALIVGLPTCIDDRELYTTSAARRFAKQLHKRFSLPVHLVDERL
                     STVEARGYLFEQGGYRQIKKAEVDSIAACVILEQWLQQSE"
     gene            4340..5233
                     /locus_tag="JBH85_12120"
     CDS             4340..5233
                     /locus_tag="JBH85_12120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HAU0946947.1"
                     /translation="MKHFLEISQLSSEQIESLLQRALYFKHTKQYPSYSQSIIANLFY
                     ENSTRTRISFELAERHLAMSVVNLDLQTSSETKGEAIEDTIRTLAAMGIQYFVIRHKQ
                     DGLQQNLANKLGDTVNIINAGDGTHAHPSQAILDMVTIIEQKKRLDKLKIAILGNIKH
                     SRVANSFQCICSKLGVGELVLISPEIWQPSQVHFGRVTDNLNEGLEGADVVICLRVQK
                     ERLLQDDHLDLDFYRNNFALTQKSLSYAKPDAMVMHPGPMNRGVEIDSEVADGNQSCI
                     LQQVTNGVYARMAILESLIAS"
     gene            complement(5347..5733)
                     /locus_tag="JBH85_12125"
     CDS             complement(5347..5733)
                     /locus_tag="JBH85_12125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946948.1"
                     /translation="MRSIRLLFPCILLMIPWQFATANRPTDNALAIIKSCYDESVNLS
                     NEFTPCVTKKLKTMPNAENFQLIMNFKTDEKGTNERIPVFMVDKTGYMYYCIVTTGKT
                     LIINACAGEQGKPLTQGQMLSIDLPE"
BASE COUNT         1772 a         1052 c         1179 g         1733 t
ORIGIN      
        1 tgagaaaagc atatggtttg cctgagaatt tatattttaa aggatattca attcattttc
       61 atattacagt aggcgttgaa atttaggcaa tccattgcct atgatgagct gataggcaat
      121 gaggattatc ccaacaaagc atgtaaaagt ttataggata agatcgttag catggaggct
      181 gcgggtaatg tcagtaccca tgacataaag atattacgga ttacaatgag attcaaagcg
      241 ccgatacctc ttgccaaacc tacacctaaa acggcaccaa ccagagtttg agtcgccgaa
      301 acagggattc cggtgctggt tgcaacaact acggtagttg ctgcagaaag tgttgcagca
      361 aatgcacggc tgggcgttaa agcagtgata gaacttccta cggtttcaat gacttttctt
      421 ccatacataa ggaaaccagt tactactccg acgcaaccta ataaaataat ccaggaaggg
      481 tagttatctg cgtcaaatat ttgattggaa tgcatgacca ggctgtgcac aatacttaat
      541 ggtccaacag ccagggcaac atcgttggag ccatgagcga aagccatagc gcatgccgtc
      601 attgccatga gcacagcaaa atacttctct acctgaataa atcgttccct gcgtcttatt
      661 ttatggtatt caggaatacg cttaataaag atcataccca gaattgtaat tattatactg
      721 gtggccagag tcaccgccaa atcttgcttt aaattcaagt gaatatcaaa atggttaagt
      781 cctttaaata cagtgataaa agataatata aaaccaatca aaaaaagata aataggaata
      841 tatagcttag ctttagtcaa cgggttactt tttacaaata tggtttgctg tatactaatg
      901 aacaaagcgt aggccgtaat ccctgaaatc aacggagatg aaatccatcc aatagcgatt
      961 cgcgctacct ggttccaatg tattgcgtca ggacccaaga ctatagtgcc aaaaccaacc
     1021 atcgagccta ctaatgcgtt ggttatcgaa acagggaccc ccagataact cgcaagattc
     1081 atccatattg tgcaggcaaa caaaacgcac agcatgcctt cgatgaggat taatggttca
     1141 ttagagagtt gactggtatt gataatccca tcacgcatgg tttcagtgac accttcaccc
     1201 cctaaaaaag cgcctgcaaa ttcgaaaatg atggcgataa gcatggcttg acggacggta
     1261 actgcctttg agcccatagt ggtactcatg acattagcca aatcattggc accgaccccc
     1321 caggtcataa gaaaacaaag aataagagca gcaaaaagta ggtaaattga ataatccatg
     1381 agtgataact accgggcaat tagaatttga agtcgaccac caactgtctg ggcatggtca
     1441 gccaattcgc caatccattg gaccagtttg tatagaaaaa ttacatctat agctgggagt
     1501 tccttttcta attcgaagat tttgtgccta atgtccgcca gtctttcatc acagtcatgt
     1561 tcaatttcgt ctaattttac tatcatttct tcaacgattt tgacttcgct gcccctgaat
     1621 ccggtttcaa gcaattcatc taattcatta atcgctgtac aggcttgttt agaggcatca
     1681 agacatcggc ttaaaaaagg cataaaagac ggaattaatt ttttaggtat gctcatttgt
     1741 ctgcttataa ttaaagcagc tatatcttct gctttattgg caattctatc ttgagcactg
     1801 agcagttcta atatatctgt gcgggcgact ggtaaaaata agccagtagg aagatgaaga
     1861 cgcaaatcac gtttaattag atccgcttct ttttcaatag agatgatttt atccttgatc
     1921 ttgtttgcag tatcccaatc gtttttgagc accgcttcaa aaaaagggta caattgcttg
     1981 gcacactgat gtgctttacg tatgtgttgt tcaatgggct ttattggtga tggcccgaac
     2041 atattgaata tactacccat aatttttgat ctcggataac agattttaag gattatacct
     2101 aaactttttg aggaacaaaa ctactactta tctagagtga atacagatta gggattaaag
     2161 ggggctattt gtaacctttt gagtcctatt agtgctacaa ttcaataaag gattttataa
     2221 ttaaattgaa acaacaggag tgtttctatg attaagcgat ggctattagt gatattatta
     2281 atttctggca acgctttttc ccagcagatg ataaccaagg ttatcgaatt gaattatttg
     2341 caagcagata aggttattca gttaatccag ccattattgc agactgatga gaaagtaagt
     2401 ggttcagggc aaacactaat tgttaatgtg agtccccaaa ctttaacgca aatcagaaac
     2461 gtattacata aaatagatgt tcctcctgtt gtttttaata ttactgttta tcaaggggat
     2521 cctgaatggt taagctcaca ggatgggaat gatgtcgttt acagcacaca accacaatac
     2581 gaagtccagc gcagtcaatc cgttaaagtt atgagtgggg aatccgcttt tgttgcgacc
     2641 ggtgaacaag taccagtagt tacttcagtt ggtgttggtc ttttagccac aggagtatct
     2701 tatgagcagc ataatatcca aaacggtttg ctagtacacc ctgttttgca aggatcacag
     2761 gtcaaattga cggtgagaag agtgcgagag caggaaaatg tagagagtga tcaacaattt
     2821 gataatcaac aaatagatac tacgatcatg gcgccattga ataaatgggt tccattaggt
     2881 acagcagagg gggttcaaaa taccgattct tcttcaactt cttatacagc tggaaggcct
     2941 ttttctcaaa attcaacttt gtacattaag gtatcagttg taaaatccac cccttctggg
     3001 accaccaaat aaaatgatgg aaatgcgttt cataatcatt ttacttggac ttctcttaat
     3061 gagcttttct tccctgaact ggagaataag ccaggattta ctgattaact aactcttaat
     3121 cccttcatta aaaatatttt tgccttgatc ctggagcttc tcgtaagcat ctttaagcca
     3181 tgaaaatcat cataattcgg tattgtgagc tcatgccatc atgggtagat taaattaaaa
     3241 acaaaatgat aaaattaaaa tcattaatag tgtataatta aagtgagcgg agataatttt
     3301 gggggggact tcttatggca attatcagtt cactggccaa tcacctattg attgccatgc
     3361 cttccttaaa agatccaaac tttgaaaggt cagtggtcta tttgtgcgag cataatgagc
     3421 aagggtcagt tggtttaatt attaacagac ctttacagtt tccactatct attgtttttg
     3481 agcaattgca aattgaacct attcgagtag aaaaaaatgg gttgccttta ttgtttggcg
     3541 gaccagtaca accagaaaga ggatttgtta ttcataaaca aatgggcggg tggcgttcca
     3601 gtttgttttt gcaagatgaa gtgacggtta ctacctcaaa tgatatcatt cgtgccatag
     3661 cttatgacga aggacctaaa gatgtattaa ttactttagg ttatgctgcc tggacagagc
     3721 agcaattgga aagagaaatt atgagtaaca cgtggctagt ttgtccctat aaatctgaaa
     3781 ttctttatga agtgcccttt gaagagcgtt gggaatacgc gggattaacg ctgggcatca
     3841 aaatgaatca actctcttct gatgctggcc atgcctagag gtgtgtattt aggttttgat
     3901 ttcgggtata aacgcatagg agtcgctgta ggacagcggc taacttgtag tgcctctccc
     3961 ttatctacta tagaagctaa agccggaatc cctgattgga ataccattca aaaagtgata
     4021 acccaatgga atccacaagc tttaattgta ggtcttccta cctgtattga tgaccgtgaa
     4081 ttgtatacaa catcagctgc tcgtcgtttt gcaaagcaat tgcacaagcg gttttcttta
     4141 cctgtgcatt tagtcgatga acgactttca acagtagagg caagagggta tttgtttgag
     4201 caggggggat atcgccagat taaaaaagcc gaggtagata gtatagcagc ttgtgttata
     4261 ctggagcagt ggttgcaaca atcggaataa ctcaaagagt atttttcttt tggcgtaaaa
     4321 tgaaatttgg cgggggaaca tgaagcattt tcttgaaatt agtcaattgt catctgaaca
     4381 aattgaatcc ttattgcaac gagctttata ttttaaacat acaaagcaat acccttctta
     4441 ttcccaaagt attattgcta atttatttta tgaaaacagt acccgaaccc gcatcagctt
     4501 tgagttagca gagcgccatc tggcaatgtc tgtagtgaat ctggatcttc agacctcatc
     4561 agaaactaaa ggcgaagcca ttgaagatac catcagaacg ctagccgcta tgggtatcca
     4621 gtattttgta attcgccata agcaagatgg gctgcagcaa aatttagcta ataagttagg
     4681 tgatacagtt aatataataa atgcaggtga tggaactcat gctcatccaa gccaagcgat
     4741 actggatatg gtgacaatta ttgaacaaaa aaagcgatta gataaattaa aaattgctat
     4801 tttgggaaat attaaacatt cacgtgttgc taattctttc caatgcattt gcagtaaatt
     4861 aggggttggt gagttggttt tgatttctcc agagatttgg caaccatcac aagtgcactt
     4921 tggacgggtt actgataatc tcaatgaagg tctggaaggt gcggatgtgg taatttgcct
     4981 gcgagttcaa aaggaacgtt tgctgcaaga tgatcatttg gatttggatt tttatagaaa
     5041 caattttgca cttactcaaa aaagtctgtc ttatgcaaaa cctgacgcta tggttatgca
     5101 ccctgggcct atgaatcgcg gggttgaaat tgatagtgaa gtggctgatg gcaaccaatc
     5161 ttgtatttta caacaggtta ctaacggtgt ttatgcaaga atggctatcc ttgaatcgct
     5221 gatagcgagt taggtttctc tatattctgt catgcattat gcttttattc tcttgggtaa
     5281 tatattctac tcatactgca agacgcatga ttaaccacgt tgagcaatag ataggaaacc
     5341 gcaaaattat tcaggtagat cgatggataa catttgacct tgcgtcagcg gttttccctg
     5401 ttctccggca caagcattta tgattaaagt ttttcctgtg gttactatac agtaatacat
     5461 ataccctgtt ttatcgacca taaagactgg tattcgttca ttcgtgcctt tttcgtcagt
     5521 tttaaaattc ataatcaatt gaaaattctc tgcgttaggc atagttttga gttttttggt
     5581 aacgcaggga gtaaactcat tgctgaggtt tactgattca tcatagcatg attttataat
     5641 cgctagcgca ttatcagtag gtctattagc tgttgcaaat tgccatggta tcattaataa
     5701 aatgcaagga aataagagtc gtatgcttct catgat
//
LOCUS       DACVWI010000175         5732 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.175, whole genome shotgun sequence.
ACCESSION   DACVWI010000175 DACVWI010000000
VERSION     DACVWI010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5732
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.175"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            108..395
                     /locus_tag="JBH85_12130"
     CDS             108..395
                     /locus_tag="JBH85_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HAU0946949.1"
                     /translation="MSAVMQQVTQGNDALSHQVISAVKGYLTSVGSKDANLNLYQLIV
                     EEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTKLKRYFDDEFIGTRDF"
     gene            506..878
                     /gene="rnpB"
                     /locus_tag="JBH85_12135"
     ncRNA           506..878
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="JBH85_12135"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(967..1755)
                     /locus_tag="JBH85_12140"
     CDS             complement(967..1755)
                     /locus_tag="JBH85_12140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HAU0946950.1"
                     /translation="MKKLIYISLIFVISNAFAQPAATVLFAKQKVISLREGKEYSLSR
                     GSQLEPGDTVVTGAGALINIKYKNGTLVNIGENSRYKILAFSPNPSDVQIKAELSQGK
                     IKFKTTGKSNESLKTPVIAMAITGTSAEIFVKSDKQTYLNLLEGNINNYAPGSYIATP
                     QGVVAGAFPAEGQVNTPAGTDGSISDAETTETISSESADATDTADATDTADATDTADS
                     AEEASDTIGFIESAQVVDQATTDSIEEEIASEIAEISLECISVI"
     gene            complement(1775..2239)
                     /locus_tag="JBH85_12145"
     CDS             complement(1775..2239)
                     /locus_tag="JBH85_12145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946951.1"
                     /translation="MKTIRLFMLSIIAHFLLTCSVIHDVWAEKTLNPEKLANTTITLI
                     SNNQNASIANCSLQSVTSCTILLHLANPGTPGILHVTNHSSFVTATNIEAVLPSSLEF
                     LVDMIESGCDVVPPGSTCSIYFYPVSGPISPQPVQLIGDNIRTATFYLGIEM"
     gene            complement(2279..4585)
                     /locus_tag="JBH85_12150"
     CDS             complement(2279..4585)
                     /locus_tag="JBH85_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HAU0946952.1"
                     /translation="MINKEDALSSWFKSSKRIIFVNKLTLYFPQFLNHIKWTEFFLGL
                     TVTLLVLLTLFFNIPPLNSLISQFEGRIYDQIINFNWHSKPENLKVIIIDIDEKSLEQ
                     EGRWPWPRSKIAELLNKLQENGVVTVGFDIVMSEAETNYALGLIEKLSQFSGKMTTDQ
                     KQLIATLNSVANQVDNDQTLVNALGKNNAILGFFFHNSEGIRKGSLPTPLRDTDSNPL
                     LANKLSVYQFTNFNGNLAAFTAAATSGGFVTNLPDKDGVVRHALLLANYKNNLYPSLS
                     LAIAMNYLLTDKVALKKYNNQLIGIELDGLQIPTNRKGQILIPFWGGPGTLNYYSATD
                     ILNNQFNPEELAGSIALVGSSITLLSDLHHTPVAQLFPGVEIVGNIVKGLVEQKIPRE
                     FDWESLQGKLCLVIFGLLFALVFSSVGIFGKLLIFFITTIVILTNTVILFVFYNNYIP
                     PAFLLTITTLQTFVNFSYSYVIEKRQKRRISELFGQYVPKEYVKELIEHPEHHTMEGL
                     NREMTVLFTDIRNFTTISETLGAGGVKLLLNSFFTPMTKIIFEHRGTIDKYVGDMIVA
                     FWGAPIEDKEHASHAVLCSLSCFEHLPQINTHLLEHGLPQVNIGVGIATGPMNVGDMG
                     SEFRRAYTVLGDTVNLASRLESLTKFYQVNILVSDKTRSYLDSILWRTVDKVAVKGRK
                     SPLTIYQPLGIVEQASARLLQEQEKYETALAHYYNQDWLAAEIIFNELKNVNPKIYLY
                     QMYLERIAAFKKKRPLPDWDGVYVHRSK"
     gene            complement(4723..5712)
                     /locus_tag="JBH85_12155"
     CDS             complement(4723..5712)
                     /locus_tag="JBH85_12155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HAU0946953.1"
                     /translation="MKIKFLLSMIGVILSTQSAYAKIPDSSASRAQNINDNKSAKNAN
                     NFLKKITPEFAYSYIDFNFDSTAGLNFNRYNGHSNLYSIGADHFSPVPSIIAGLYVLN
                     IDTEVSSQFQLFPNTPIPSSQTIHNNTLFAHMRKIFTPKFDIDIAGGYGQNRINSQTL
                     LNRAITDVAFSKHTNDNWLASINAVYRKRGKKISLRTYVGMLYSQINSGSYILAFQSN
                     QRGQIIAPLTTKTTYIMEGAEISYKLKPTLTPFVNGGLIQIADFTNSRPILTQQINGS
                     LPQLNMDKNGYKLGAGVIFNYKQMTLRLEEKYYSAGNIFESYQTTAGLEYRFN"
BASE COUNT         1680 a         1044 c         1141 g         1867 t
ORIGIN      
        1 gtttacactc tttgggatat ttgatattat atcggtcatg gtgttagagc caaattaatg
       61 tgctggacat gatttatgtt cattaaattt gtattaggag attaataatg agtgcagtta
      121 tgcaacaagt gacacaaggt aacgatgcct tgtcacatca agtgattagt gcagttaaag
      181 gttatttaac aagtgtcggt agtaaagatg ctaatttaaa cttatatcaa ttgattgttg
      241 aggaagtaga agccccttta ttccggactg ttatggaatt aactcgctat aatcaatcaa
      301 aagctgctcg agtgcttggt gtaagtcgtg gtactttgcg cactaaatta aagcgttatt
      361 ttgatgatga attcattggt actcgtgatt tttaattcag ttatatagct aatactttcc
      421 aagttcagtt atttttcgcg gtattctaat agaaattcat cgttaattat ggcctttgcc
      481 tgggcactct gctaatattg aagtcagagt cggtcaggca atcgctcttt gcctaacagc
      541 aaggggagga aagtccgggc tccatagggc agagtgccag gtaactcctg ggaggtgtga
      601 gcctacggaa agtgccacag aaaatatacc gcccactttt cctttgggaa tcgtaggtaa
      661 gggtgaaatg gtgcggtaag agcgcaccgc gcgattggta acagtcgtgg cagggaaaac
      721 cccactcgga gcaagaccaa ataggaatcc atttgactgc aaggtcctaa cgtatggccc
      781 atacgggatt cgggtaggtc gcttgaggca tgtggtgacg catgtcccag atgaatggtt
      841 gcccacgaca gaacccggct tatcgaccga ctctaatcca tattctatgt taatacatac
      901 cattatatgc ctttggctcc tatataaata aggaggtaaa gtcgcataca aaaatgacat
      961 gccaagctat ataacactta tacactccag ggagatctcg gctatttcac ttgcaatttc
     1021 ttcttctatt gaatcagtag tcgcttgatc cactacttga gctgattcaa taaatccaat
     1081 agtatcagac gcctcttcag cgctatcggc ggtatccgtt gcgtcggccg tgtctgtagc
     1141 atctgctgta tctgtagcat ctgcagactc tgaggagata gtctcagtgg tttcagcatc
     1201 agagatgctt ccatctgtgc cagctggagt gtttacctgg ccttcagcag gaaaggcacc
     1261 tgctacaacc ccctgtggtg tagcaatgta actcccagga gcataattat ttatatttcc
     1321 ttctagcaaa tttaaataag tttgtttatc agattttaca aatatttcgg cagatgtgcc
     1381 tgtaattgcc atcgctatca ctggagtttt caggctttca tttgatttgc ctgtggtttt
     1441 aaactttatt tttccttgag ataattcagc tttaatttga acatcagatg gatttgggga
     1501 aaaggctaga attttatatc tggagttctc acctatattt accaaggttc catttttata
     1561 tttgatgtta atcagggcgc ctgcccccgt aacaacagtg tctcctggct ccaattgaga
     1621 gcctcgagag agtgagtatt ctttaccttc tctgagtgag atgacttttt gtttggcaaa
     1681 taatactgtg gctgctggtt gagcaaacgc attgcttata acaaaaatta gactaatata
     1741 aatcaatttt ttcatgagtt cttcctactg gatatcacat ctctatacca agataaaatg
     1801 tcgcagttct tatattgtcg ccaattaact gaactggttg cggagaaata gggccactta
     1861 caggatagaa atagattgag caggtacttc caggtggaac tacatcacaa ccgctttcaa
     1921 tcatatccac aagaaactct agtgaacttg gtagtacagc ttcaatattg gttgctgtaa
     1981 caaaagagga gtggttagtc acatggagaa ttcctggggt accagggtta gcaagatgaa
     2041 gaagtatggt acaacttgtt actgattgaa gtgagcaatt ggcaattgag gcattttgat
     2101 tattagaaat taatgtgatt gtggtatttg ccagtttttc gggatttagg gttttttcag
     2161 cccaaacgtc atgaattact gagcaggtta ataaaaaatg tgcaattatt gataacataa
     2221 acagcctaat tgttttcata atccttccta ttgcagtatt taaagtttct tcttgatctt
     2281 acttgcttct atgaacatac accccatccc agtcaggcaa aggccgcttt tttttgaatg
     2341 ccgctattct ttccaaatac atttggtaca aataaatttt agggtttaca ttttttaact
     2401 cattgaagat aatctcagcg gcaagccaat cctgattgta atagtgagct aatgccgttt
     2461 cgtatttttc ctgctcctgc agaagtcttg cagaggcttg ttcaacaata cctagaggtt
     2521 ggtaaatagt caatggactt ttacgacctt tgactgccac tttgtcaacg gtacgccata
     2581 atatgctatc caggtaggag cgagttttgt cacttaccag gatattcact tgatagaatt
     2641 tggttagact ctctagcctg gatgcgaggt taacggtatc gccaagaaca gtatacgctc
     2701 gacgaaactc agaacccatg tcaccaacgt tcataggacc agttgctata cctactccaa
     2761 tattaacttg tggcagccca tgctccaata aatgggtatt aatttgaggc aagtgctcaa
     2821 agcaggaaag agaacacaaa acggcgtgac tcgcatgctc cttgtcttct attggtgctc
     2881 cccagaatgc cactatcata tctccaacat atttatcaat ggttcctcta tgctcaaaaa
     2941 tgattttggt cattggggtg aaaaatgaat ttaatagcag ttttacaccg cctgcaccaa
     3001 gtgtttcgct aattgttgtg aaattgcgta tgtcagtaaa cagaactgtc atttcacgat
     3061 tcagcccttc catagtatgg tgttcgggat gctctattaa ttctttgacg tattctttgg
     3121 gtacgtattg accgaataat tcacttattc gtcttttttg cctcttttca atgacatatg
     3181 aataggaaaa attaacaaaa gtttgcaagg tagtgatggt taataaaaat gcagggggga
     3241 tgtaattgtt gtaaaatacg aacaagataa ctgtatttgt taatattact atggttgtta
     3301 taaaaaagat taataatttg ccaaaaatac caacagaaga aaatacaagc gcaaataata
     3361 agccaaaaat cactaaacaa agttttcctt gcaatgattc ccagtcaaat tctcggggaa
     3421 ttttttgttc caccagtcct tttacgatat tacccactat ttcaactcca ggaaataatt
     3481 gggcaactgg tgtatggtgt aaatcagata agagtgttat ggatgagcca actaaggcga
     3541 tactcccagc caattcctcg ggattgaatt ggttgttcaa tatgtcagtc gctgaatagt
     3601 aatttagtgt tcccgggcct ccccaaaatg gaataagaat ttgacctttt ctatttgtgg
     3661 gaatttgtag cccatctaat tctataccta tcaattggtt gttatatttt ttcagagcaa
     3721 ccttgtcagt taagaggtaa ttcattgcta ttgccaaaga taaactggga tagaggttgt
     3781 ttttataatt ggccaataaa agtgcatgtc ttacaacccc atctttgtcg ggtaaatttg
     3841 taacaaaccc gccagaagtt gcagccgcag taaatgcggc caaattaccg ttgaaattag
     3901 taaattgata cactgacagc ttatttgcca ggagggggtt gctgtcagta tctcttaatg
     3961 gtgtcggtaa agagcctttt ctaatgcctt cgctattatg aaaaaaaaaa ccaagtatcg
     4021 cattattttt gcctaaagcg ttaacaagcg tttgatcatt atcaacctga tttgcaacgc
     4081 tgtttaatgt ggcaatcaac tgtttttgat cagttgtcat ttttccagaa aattgactca
     4141 gtttttctat gaggcccaaa gcataattcg tttccgcttc tgacatgact atatcgaaac
     4201 caacagtgac cacaccattt tcttgtaatt tatttaataa ttcagctatt ttacttcttg
     4261 gccatggcca tcttccttct tgttctaatg atttctcatc aatgtctatg ataataactt
     4321 taaggttttc aggttttgaa tgccaattaa agttaattat ttgatcataa attcttcctt
     4381 caaattggga tattagcgaa ttgagtgggg gaatattaaa gaacaaggtt agtaacacta
     4441 aaagggttac tgtcagcccc aagaaaaact cagtccactt tatgtgattg aggaattgag
     4501 gaaaataaag agttaattta ttcacgaaaa ttatcctttt gctactctta aaccaagatg
     4561 aaagagcgtc ctctttatta atcagtatat agtcttcgag ggaagggtag aaataatgtt
     4621 tttaagcctg gtagatcaca ggtatatttg ttccatgtta ttgcaaaatt aattttcgtg
     4681 cctccgatat gaagaacaat aaataaatta ctatacaacc aactaattaa atcggtactc
     4741 cagtccggca gtcgtttgat aactttcaaa aatgtttcct gcgctgtaat atttttcttc
     4801 aagccttaaa gtcatttgtt tataattaaa aataactcca gcaccaagtt tgtagccatt
     4861 cttatccata ttgagctgag gcagagagcc attaatttgt tgagtaagta taggtcggct
     4921 attggtgaag tccgctattt gaatcaaacc accgttaaca aaaggggtta atgtaggctt
     4981 gagtttgtaa ctgatttcag ccccttccat aatataagtt gtttttgtag ttaaaggagc
     5041 tatgatttgc ccgcgttggt tggactggaa ggctaatata taactacccg aattaatttg
     5101 gctgtataac attcccacat aggttcttag agatattttt tttcctcgct ttctataaac
     5161 tgcattaatg ctggcaagcc agttgtcatt agtgtgtttt gaaaaagcga catcagtgat
     5221 ggcgcgattt aacaaagttt gtgaatttat tctattttga ccatatcctc cagcgatatc
     5281 tatatcaaat tttggggtaa atattttacg catatgtgcg aataatgtgt tgttgtgaat
     5341 cgtttgactg gaaggaattg gagtattggg aaacaattga aattgagaac tcacttcagt
     5401 atctatgttt agaacataaa gcccggcaat gatgctcggt actggagaaa aatgatcagc
     5461 acctatggaa taaagattgg aatgcccatt gtatcgattg aaattaagac cagctgtcga
     5521 atcaaagtta aaatctatat agctgtaagc aaattcaggc gtgattttct ttaaaaagtt
     5581 attagcgttt tttgcgctct tattgtcatt tatattttgt gctcttgatg ctgagctatc
     5641 aggaatttta gcataggctg attgtgtgct tagtattact cctatcattg ataacaaaaa
     5701 ctttattttc attatttcaa aaatccttag cg
//
LOCUS       DACVWI010000176         5728 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.176, whole genome shotgun sequence.
ACCESSION   DACVWI010000176 DACVWI010000000
VERSION     DACVWI010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5728
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.176"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            42..2393
                     /locus_tag="JBH85_12160"
     CDS             42..2393
                     /locus_tag="JBH85_12160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946954.1"
                     /translation="MMRYLLLLPGVLIAIVTSVNANTSLKPSIAQPTACVNSLFTATG
                     NQHWKSIVLKLTNNCNQAVDFQNSTVSFQTTAALNTSFWGDFSPLSYPDNALNISSQP
                     QSGGNYLATLNLHFPSYPGANSKLPVGSSISIKYGAVTDSHIEGTANVYLSTTVETGS
                     IQLINAAAKPTNVSQGYALVHVTMNGQSVSDVQLPWETSKTLSGFAAGNYAISAETVT
                     DSNGNLYLGQANPSMVNVIANQTTSSTINYARVQETGKIKIHVQNLPGELSNYNENPT
                     VLITQSQSGNSRSQHAVWGNTTTVAELKEGSSYQFSTPAIQYNDYNCWPTFTPSSLVA
                     SAANVPTTNLTYQCAQIVKDNVTINVSGAPSSLASLKIILTPNDGSQTVEQTIDLANG
                     VGSSAISLTDGGIYTLSSEGVPGYTVQFSPQPLTATENATVNITLSPVTAAKGRIIGY
                     VPGWKTPPAAQELASAGYTHVMIAFGVFSTNTPGVIVPAFETITKEYIQSLHQVGIKV
                     ILSLGGALTSIPNTTVDFHQVLVASSSPEAFKQTFINSLKELISQYDFDGFDIDIEHG
                     INAGGSFSQPQGDIAVLASIINTMYSQNPSLLITLTPQVANIAATSGFDQTWGNYASL
                     TMQTHQSLAWVGIQLYNTGCAFGIDQVCYGPTPTDTPDFSVAMATDLLENWPATVNGR
                     PTGFQPYVSYLRPSQIVIGYPSPNSNGGSDGSPVTPTTTIKRAIQCLKTAIASNTSCG
                     AYAPPRAYGNIGGVFNWEVTYDKNNQFKFAKELKNCVINGVCE"
     gene            complement(2432..2905)
                     /locus_tag="JBH85_12165"
     CDS             complement(2432..2905)
                     /locus_tag="JBH85_12165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946955.1"
                     /translation="MAIYKFEISTMQNGNIQISAKHKLTGEIHGYVQLASSDRLESRN
                     LLEIDQLYVDNNARGHGLGSELASRAIKYALKMDKGIHMMIQPGSDVFWKKYFNSRFD
                     GKRITLFGGEALNTNLADGKVFEISKESLVANYKFPQDRHLRDRDMERICTKLSN"
     gene            complement(2997..4112)
                     /locus_tag="JBH85_12170"
     CDS             complement(2997..4112)
                     /locus_tag="JBH85_12170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HAU0946956.1"
                     /translation="MSRYVCKWKLIYTFFIFIVFNNCPLAFASPSLTKQLHTILKDNL
                     ADSLTPGAVLLISSADLGTISVAAGLADKENDISMNITDSFRLASMSKTFLAVTVLKL
                     VADKQLNLDDHIADLLPDSIDIERIPNGDEVTVQQLLQMRSGIPNYTDYDSYSDLIDT
                     MADKEWTPEECIKLVYDQKPDFKPGTAYEYSNTNYLLLQLIIENITGESYAESIKKYI
                     LKPLHLKNTYIEKQEFDDDHHYLSTHGYTLEDGKVVDVTDHDDGFGLADGGIISTAED
                     INIFVQALLKDKILLSPNYLTMMLTFTDDYGFGIGREEINGEIAWSHNGASSGYQGQY
                     YYFPDRQLTVVILTNYFDSDIIEDIVSQTLSAIDNSE"
     gene            4380..5444
                     /locus_tag="JBH85_12175"
     CDS             4380..5444
                     /locus_tag="JBH85_12175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine-type phosphatase"
                     /protein_id="HAU0946957.1"
                     /translation="MVNKICLSFALLISVPSILLAEDKLIFAVDIIRHGDRTPIVALP
                     TVNYQWQEGLGQLTAEGMQQEYKMGVAFRKKYIEESHLLPEHYEYGTIYVRSTDYART
                     LMSAQSLLMGLYPPGTGPTIPAGTSALPHAFQPIPVFSAPSKYDEVIIQQVDRKEREK
                     LMEQYVFSTREWQQKNNELKDKYPLWSRLTGINIDNLGDLETVGHTLYIHQIHNAPMP
                     EGLASNDIETIINSAEWAFMAQEKPQQIANVYSSKLMTNIADYLNSGSMKKSKLKYVL
                     LSAHDTTIASVLSFLGAPLEKSPPYASNVNFSLYDNGANYYTVKITYNGNPVSIPACG
                     GSVCELQQLINLVHDSKNSV"
BASE COUNT         1722 a         1137 c         1075 g         1794 t
ORIGIN      
        1 gatgatagat tagttttttt ccaatcacaa atgaggaggg attgatgcga tatttattat
       61 tactgccagg tgttttaatt gcaattgtga caagtgtcaa tgccaatacc tctttaaaac
      121 cctcaattgc ccagcctaca gcctgtgtaa actcactttt tacagcaacg ggaaatcaac
      181 actggaaatc aatcgtatta aagttaacca ataattgcaa tcaggcagtc gattttcaaa
      241 attcaactgt ctcctttcaa acaacagcag ctttaaatac ctctttttgg ggggattttt
      301 ctcctttatc ttacccggat aatgctttaa atatttcttc tcaacctcaa tctggcggaa
      361 actatctagc cactttaaac ctgcattttc ccagctatcc gggtgctaat agcaagttac
      421 ctgttggaag ttctatttca attaaatatg gggcagtcac tgatagtcat atcgagggaa
      481 cggctaatgt ttatttaagc acaacggttg aaacaggaag catccaatta atcaatgctg
      541 ctgcaaaacc aacaaatgtg tcacaaggat atgcattagt tcatgtcaca atgaatggtc
      601 aatcagtcag tgatgtgcaa ttaccatggg aaacttcaaa gactctatct gggtttgctg
      661 caggtaatta tgctatttct gctgaaacgg ttactgacag taatggcaat ctttatctgg
      721 gacaggccaa tcccagcatg gtgaatgtga ttgcaaacca aacaacgagc tcgactatta
      781 attatgctcg ggtacaagag acaggcaaga tcaagatcca tgtgcagaac ctccctggcg
      841 aattaagcaa ctacaatgaa aatccaactg ttctaattac ccagagtcaa tcaggaaatt
      901 cacgctcaca gcatgccgtt tgggggaaca caacgactgt tgctgagttg aaagagggga
      961 gtagttacca attctcaact cctgcaattc aatataacga ttacaattgc tggcccactt
     1021 tcacaccatc ttccttagtg gcaagtgctg caaatgttcc aactaccaat ttaacctatc
     1081 agtgtgccca gattgtgaaa gataatgtga caattaatgt cagtggcgct ccatcctccc
     1141 tggcttcatt gaaaattatt ttaactccca acgatggttc acaaacagta gaacagacaa
     1201 tagatttggc caatggtgtt ggttcatctg ccatttcttt aactgacggg ggtatttata
     1261 cactttcaag tgaaggtgtt cccggctata cagtacaatt ttcgccccaa cctttaacag
     1321 caacagaaaa tgcaacagta aacatcactt tatctccggt aaccgctgca aaagggcgta
     1381 ttattggtta cgtaccggga tggaaaactc cacctgccgc tcaagagttg gctagcgcgg
     1441 gttatactca tgtcatgatt gctttcggcg tatttagtac caatactccg ggtgttattg
     1501 ttcctgcttt tgaaacaata accaaagaat atattcagtc tcttcatcaa gtcgggatta
     1561 aagttattct ttctttaggt ggtgcgttaa ccagtattcc caatacaaca gtagattttc
     1621 accaggtttt agtagcttct tcttcaccag aggcatttaa acaaacattt atcaactctt
     1681 taaaggagtt aatttctcaa tatgattttg atgggtttga tatagatatt gagcatggta
     1741 ttaacgctgg cggttccttt tctcaaccac aaggtgacat tgctgtctta gcaagcatta
     1801 ttaatacgat gtacagtcaa aatccttctt tgctgattac tctgacacct caagtggcta
     1861 atattgctgc aacaagcggt ttcgaccaaa cctgggggaa ttatgcctct ttaactatgc
     1921 aaactcatca gtcattggcg tgggtaggca tccaactcta caatacagga tgtgcttttg
     1981 gtattgatca ggtatgttat ggccctacac caactgatac gcctgatttt tcggtagcca
     2041 tggctaccga tttattggaa aattggccag caaccgtcaa tggacgtcct acaggatttc
     2101 aaccttatgt tagctattta agaccttccc aaattgtaat tggttatccc tccccaaatt
     2161 ctaatggtgg cagtgacggt tcaccagtca ctccgacaac gacaatcaaa cgggctattc
     2221 agtgccttaa gacagcaatt gccagtaata ccagttgtgg tgcttacgct ccaccaagag
     2281 cttatggaaa tatcggtggt gtatttaact gggaagtgac ttatgataaa aacaatcaat
     2341 tcaaatttgc aaaagaattg aaaaattgtg ttattaatgg tgtttgtgag taattcattt
     2401 gaccaagtca ggctttagag cctgacactt attaattaga gagtttggtg cagattcttt
     2461 ccatatcgcg atcacgcaag tgtctatctt gaggaaattt gtaattggca accagacttt
     2521 ctttagaaat ttcaaatact tttccatcag ctaaattagt atttaaagct tctccaccaa
     2581 acagggtaat gcgttttcca tcaaaacgag aattaaaata ttttttccaa aacacatccg
     2641 aacctggttg aatcatcata tgaattcctt tgtccatttt aagagcatat ttaatggctc
     2701 ttgaggcaag ttcacttccc aatccatgtc ctctggcatt attgtcaaca taaagctgat
     2761 ctatttctaa caaatttctg ctttctaacc tgtccgatga ggcgagttga acatagccgt
     2821 gtatctctcc tgttaatttg tgctttgctg atatctgtat attgccgttt tgcatagttg
     2881 agatttcaaa tttgtaaata gccatatttt gcccccataa aagcctagat aattttcact
     2941 tagtataaca tataatctat tttgcgggct tccattagat gagtgcagct aagcagttat
     3001 tcagaattgt caatcgcact gagagtctga gatactatgt cttcgatgat atcactgtca
     3061 aaatagttgg ttaaaataac aacagtcaat tgccggtctg gaaaatagta gtactggcct
     3121 tggtatcctg agcttgcccc attatgggac caggctatct ctccattaat ttcttcacgt
     3181 cctattccaa aaccgtaatc atctgtaaag gtaagcatca ttgttaaata gtttggagat
     3241 aaaagtattt tatctttcaa caacgcctgg acaaagatat taatatcttc agcagtacta
     3301 attattccac catcagccaa gccaaaacca tcatcatggt ctgttacgtc aaccactttg
     3361 ccatcttcca aggtatagcc atgtgttgat aaataatgat ggtcgtcatc aaattcttgc
     3421 ttttctatat atgtattttt taaatgaaga ggtttcagga tgtatttctt aattgattcg
     3481 gcataggatt ctccggttat gttttcgata attaattgca gcaacaaata attagtattg
     3541 ctgtactcat aagctgttcc tggcttaaag tcaggttttt gatcgtagac tagtttaatg
     3601 cattcttctg gtgtccattc cttgtctgcc atagtatcaa tgagatcact gtaagaatca
     3661 taatccgtat aattaggaat gccgctacgc atttgtagta attgttgcac tgttacctca
     3721 tctccattcg gtatacgttc aatatctata ctatctggca ataagtctgc aatatgatca
     3781 tcaagattta actgtttatc tgctaccagt tttaagacag ttacagccaa aaatgtttta
     3841 ctcatgcttg caagacgaaa actgtccgta atattcattg aaatatcatt ttccttatct
     3901 gccaaccctg ccgcgacgga aattgtgcct aaatcagcac ttgatatcag taatactgct
     3961 ccaggggtta atgagtctgc gagattgtct tttaatatgg tatgtaattg cttggttaag
     4021 gaagggctcg caaaggcaag tgggcaatta ttaaagacaa taaaaatgaa aaacgtataa
     4081 atcaatttcc acttgcatac ataacggctc attgcaactc caatgtggca agggttttct
     4141 cacccaccaa atgagctata tcttaattct agtcgatttc aggataattt ctttacttcc
     4201 tgtataaaat agattgttcc tccaggttca aaatgaatca aggaatacaa aagccgatgt
     4261 cttgattttt gtttgtgtct tcgtcatagt gcgaaaccga gattaaccaa cggtggcaag
     4321 atacgacaag aattttttac gaagcctcat gtttacttta actcaaggag tatgaataca
     4381 tggtcaacaa gatttgcctg agtttcgcac tattaattag cgtaccctcc attttattag
     4441 cagaagataa gcttattttt gctgtggaca ttattcgtca tggcgacaga acgccgattg
     4501 ttgctttgcc tactgtaaat taccaatggc aagaggggct tggccagctt acggcagaag
     4561 gtatgcaaca agaatacaaa atgggtgtgg catttcgcaa aaaatatatt gaagagtcgc
     4621 atttgttacc tgaacactat gaatacggaa ccatctatgt ccgctctacg gattatgcac
     4681 gtactctgat gagcgcccag tcattgttaa tggggctata tccacctgga actggaccaa
     4741 caattcctgc aggaacttcc gctttacctc atgcttttca gcctattccc gtatttagcg
     4801 caccgtctaa atacgacgag gttattattc agcaggtaga tcgtaaggaa cgggaaaagc
     4861 taatggagca atatgttttt tctaccaggg agtggcaaca aaaaaataat gaattgaaag
     4921 acaaataccc attatggagc cgtctgactg gtattaatat tgataatctg ggggatctgg
     4981 aaacagttgg tcatacctta tatattcatc aaatccataa tgctcctatg ccggaaggat
     5041 tagcttctaa cgatattgaa acaattatca attctgctga gtgggctttt atggcacaag
     5101 aaaaacctca acaaatagcg aatgtttata gttcaaagct gatgactaac atagctgatt
     5161 atctgaattc cggaagcatg aaaaaatcta aactgaaata tgttttgcta tctgctcatg
     5221 atactacaat tgccagtgta ttaagttttt taggtgctcc tttggaaaaa tccccacctt
     5281 atgcctcaaa tgttaatttt tctctctatg ataatggagc aaattattac acagtaaaaa
     5341 ttacctataa tggtaatccg gtttctattc cagcgtgtgg tggttcagtt tgtgagttac
     5401 aacagcttat aaatttggta catgattcta aaaattcagt gtaactactc attctggagg
     5461 tatttggccg aggtaagtaa tcctaaccat ctcaaactat ctgttgttgc aaaacagcaa
     5521 tagcagctgg tttgagataa ttcaattaat cgatgaattc caaaagatct gggcgcatga
     5581 aagggatact ctaataatca agattctgtt catggtaaga tgtgttgtgg tcgtgctcgg
     5641 aatgcaatcc ttgatagagt acacacaaat ctggatggaa aaatttataa attaaatatg
     5701 acctgacaga tacctttgaa tagctggt
//
LOCUS       DACVWI010000177         5724 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.177, whole genome shotgun sequence.
ACCESSION   DACVWI010000177 DACVWI010000000
VERSION     DACVWI010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5724
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.177"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(26..238)
                     /locus_tag="JBH85_12180"
     CDS             complement(26..238)
                     /locus_tag="JBH85_12180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0045 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946958.1"
                     /translation="MKSTNNMQKKETDKPTSEQEQKKEVRRNNAPDFIPGASPYYNLY
                     CFFYKLCHGEDTSRQHQPATSFQHGK"
     gene            448..846
                     /locus_tag="JBH85_12185"
     CDS             448..846
                     /locus_tag="JBH85_12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946959.1"
                     /translation="MNCFPFFAKKNKKNNEEKAEKIFSVFPAGTSINKTTVKEICFTD
                     IFCDTHPFVWYYYPEHNLAIWTSRLAGTTQEYPADYLLNQLAKIPGITIDQGDAAIKD
                     VSTFLQGHQMIPIRNNESWRYIKSSSFSMS"
     gene            1012..1707
                     /locus_tag="JBH85_12190"
     CDS             1012..1707
                     /locus_tag="JBH85_12190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CatB-related O-acetyltransferase"
                     /protein_id="HAU0946960.1"
                     /translation="MSSFKFLNEQDMKPTDKKHWSKIEYLHQSVKNPNIHIKGKHSYY
                     SDAWTGSFEETVVRYLYGDEYSLQTWQPQWQIDQLYIGDYVCIAAEVIILLGGNHNHR
                     ADWFCLYPFADKYVEAYQGKGDTIIKDGVWLGMRAVIMPGVTIGEGAIVAASSIVTKD
                     VEPYSIVAGNPAKPVKKRFAENVIERILALGIYSWSEAKFNLLKDYICSNNIDKLEQA
                     SRSYDQNHTIESK"
     gene            1704..2582
                     /locus_tag="JBH85_12195"
     CDS             1704..2582
                     /locus_tag="JBH85_12195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0946961.1"
                     /translation="MINIRKLRLGDESTLETFLKSHADESMFLRSNLYHSGLSYHDKP
                     FHGDYFAAFDTNKKISGVLAHYWNGNVIVQCPDFNVLTALVGTFQKAATREIAGILGE
                     DQQADVVMKQLQLEHVDYAVNYPDGLYALNLQNLAMPGNQDRYQLKVAKDCDKCLLYE
                     WLRAYQIEALGAEEDSSILKEQVESEVKSTLEGNDRWVLEENGTPVSLCSFNARLSDI
                     VQVGPVWTPVTLRGRGYARTVVALSLSAAQKSGVSRAVLFTNNQAAVRAYQAIGFNKV
                     GNYRLAILKKPILLTR"
     gene            2617..3930
                     /locus_tag="JBH85_12200"
     CDS             2617..3930
                     /locus_tag="JBH85_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAU0946962.1"
                     /translation="MIGNKTMDMDIKHKPLKRELSLFGATMMGLGSIVGTGVFVSIGI
                     AAGVTGPSVILAIALAALVATCNAFSSAQLAANHAVSGGTYEYGYRYLHPAFGFTAGW
                     MFLCAKSASAATAALGFAGYFIHLSGLETVPVIPIALAVSITLILLVLSGLRRTNTVN
                     IIIVMITLITLTVFIISGLPDFMQRGTANLRPFFPVSKQEGLSHFFYATALMFVAYTG
                     YGRIATLAEEVKNPGKFIPAAIIITLMVSAVLYILVGLVAIGAVGVEKLAQVTETNAT
                     PLESAARAIGIPGLSVLVSIGACTAMLGVLLNLILGLSRVALAMGRKGDLPKMFCYVS
                     ETRHVPVSAVIGVGVVIIALVLTGSVETTWTFSAFTVLIYYAITNLAALHLPKEEQLY
                     PPLFAIGGLLSCLFLAFWVPIGVWITGISLLFLGLLWKVVANRFL"
     gene            3994..4860
                     /locus_tag="JBH85_12205"
     CDS             3994..4860
                     /locus_tag="JBH85_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4396 domain-containing protein"
                     /protein_id="HAU0946963.1"
                     /translation="MIDGIMVLWFILLMLSLAFIAYDVREMPIDWVQKLGWVLVVAYT
                     GPLGLFFYFLTCRSPGKGLHALYTKAQWKQAVNSEVHCLAGDATGIIFAAIFLSFIDL
                     SNGVELILEYISAFFFGWVIFQAGMMRSMYSSYGEALRKTFFAETISMNFVMMGMIPV
                     MMILMNTLDYGRNPAHLQFWFIMGMATVVGGFLAFPINNWLVKKKLKHGCMTLPEGDE
                     QIEGHMTHHHGGHEEHLQAQAKRIGSKVIHGHTHEMGSLPLNIQLKYIGISFGVLLII
                     VLIMAFFVPLKI"
     gene            complement(5348..>5724)
                     /locus_tag="JBH85_12210"
     CDS             complement(5348..>5724)
                     /locus_tag="JBH85_12210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HAU0946964.1"
                     /translation="NTRFNFETAFDYIFVFVIGAVLSRAINGNSTLISAMAGSSLLIF
                     LHWIFALCSFYSHGFGKLVKGKSVLLIQDGQLIWSALKRHQVTEEDLRQVFREKLNAS
                     DLTTVKEARLERTGRISFITYK"
BASE COUNT         1710 a          986 c         1208 g         1820 t
ORIGIN      
        1 gcttctagtt atgttaaaaa gaaatttatt tcccatgctg aaaagaagta gccggttgat
       61 gttgtctgga tgtgtcttca ccatggcaaa gtttataaaa aaaacaataa agattataat
      121 aaggtgatgc accaggaata aaatcggggg cattatttct tctcacttcc ttcttttgtt
      181 cttgttccga agttggttta tcagtctctt ttttttgcat gttatttgtt gatttcataa
      241 atcttatcct tgattaagaa aatagattga attttaagta tcgttcaaac caggaaagag
      301 agttccggtt tgtttacaaa tgaaccgttt tattgctcat ggcttggtga ttatagttca
      361 gacaggtgat caattgtagt agttgtccca gatgtgttat gtttatctga ctgacaggaa
      421 ttgaggtgcc agaacaagga atagataatg aactgttttc ctttctttgc aaaaaaaaat
      481 aaaaaaaata acgaagaaaa agcggaaaaa atattcagcg tatttcctgc aggtacttct
      541 ataaataaaa caacggtaaa ggaaatttgt tttacagata tcttttgtga cacccatcct
      601 tttgtttggt attactatcc agaacataat ctggcaattt ggacttcaag gctggcaggg
      661 acaacccaag aatatccggc agattatttg cttaatcaac ttgcaaaaat tcctggaatt
      721 accatcgacc aaggtgatgc agccatcaag gatgttagta ctttcctcca gggccatcaa
      781 atgattccta ttagaaacaa cgaaagctgg cggtatatca agtcttcttc tttctcaatg
      841 agttaatgaa tagattgaaa gcaggtcctt gttcttgata atggaagatt ttgctggctc
      901 agtttcgcaa gtgatgcgca agggatattc aaatgatttc tctcatctta ttgattgcat
      961 agagcccaca cataatgaaa cattagaaag ttataatcat aataatatac aatgagctca
     1021 tttaaattcc taaatgagca agacatgaaa cctactgata aaaaacactg gtctaaaatc
     1081 gaatatctac accaaagcgt aaaaaatcca aacatccata tcaagggtaa acacagttat
     1141 tatagcgatg cctggactgg tagttttgag gaaaccgtcg ttcggtatct ttatggagat
     1201 gaatacagtt tacaaacctg gcaaccacaa tggcagattg atcaattata tattggtgat
     1261 tatgtttgta ttgctgctga agtgataatt ctgttaggtg gaaaccataa tcaccgagcg
     1321 gactggtttt gtttgtatcc atttgcagat aaatacgtag aggcttatca aggcaaaggc
     1381 gatactatta ttaaggatgg tgtctggctt ggcatgcgtg ctgttattat gccaggcgtt
     1441 actattggcg aaggagcaat agtggctgca agcagtattg taaccaaaga tgtggagccc
     1501 tacagcattg ttgctggaaa tcctgcgaaa ccagtcaaaa aaagatttgc agaaaacgtg
     1561 attgaacgaa ttctggcctt aggtatttat tcctggagcg aagccaaatt taacttatta
     1621 aaagactata tttgcagcaa taacatagat aaattagagc aggctagcag gagctatgat
     1681 caaaaccata ccatagaaag caaatgataa atatcaggaa attaagatta ggtgatgaat
     1741 ccaccttgga aactttttta aaatctcatg ctgatgagag tatgttttta cgcagcaatc
     1801 tctatcattc cgggttgtct tatcatgata agccttttca tggggattat tttgctgcat
     1861 ttgataccaa caaaaagata agcggtgtat tagcccatta ttggaacggc aatgtcattg
     1921 tgcagtgccc tgatttcaat gttttaacag cactagtggg cacttttcaa aaagccgcta
     1981 cccgagaaat tgcaggtatt ctcggcgaag atcagcaagc cgatgttgtc atgaaacaac
     2041 tccagctgga gcatgtagat tatgccgtga attacccgga tgggctatac gcacttaatt
     2101 tacagaatct agcaatgcca ggtaatcaag acagatatca actgaaagtc gccaaagact
     2161 gtgataaatg tttattatat gaatggctta gagcttatca aatcgaagcc ttaggtgctg
     2221 aagaagacag ttcgatttta aaagagcaag tagagagtga agtgaaaagt actctcgaag
     2281 gcaatgatcg ttgggtttta gaggagaacg gcacccctgt ctcgctatgc agttttaacg
     2341 caagattatc agatattgtc caggttggac cggtatggac accagttacg ttgcgggggc
     2401 gaggatatgc tcgaacagtt gttgcgctta gtcttagtgc agcccaaaaa agtggagtga
     2461 gtcgagcggt attatttact aataatcaag ctgccgtacg agcttaccag gcaattggtt
     2521 ttaataaagt aggcaattat cgattggcca tattaaaaaa accaatactc ttgacacgtt
     2581 aattgtgaat acctgttaaa acagtaaaag tatttattga taggaaataa aacgatggat
     2641 atggatatta aacataagcc tttgaagcgt gaactcagtc tatttggcgc tacgatgatg
     2701 gggctcggct ctattgtcgg gacgggtgtt tttgtcagca tcggaattgc ggcgggtgtc
     2761 acaggaccat ccgtcattct tgctattgct ttggcagcac ttgttgctac ctgtaatgcg
     2821 ttttccagcg ctcaacttgc cgcaaatcat gctgttagtg gaggtactta tgaatacgga
     2881 tatcgttatt tacatcctgc ttttggtttc actgccggtt ggatgttttt atgcgcgaag
     2941 agtgcttccg ctgcaacggc cgcgcttggc tttgccggtt attttattca cctgtcaggt
     3001 ttagagacag tgcctgtcat acctatcgct ttagcagtgt ctatcacact aatactttta
     3061 gtcttaagtg gactcagaag aacaaataca gtgaatatta ttattgtaat gattacatta
     3121 ataaccttaa ccgtttttat aataagcgga ttacctgatt tcatgcaaag gggaactgct
     3181 aatctgaggc ccttctttcc tgtttcaaaa caagaaggat taagtcattt tttttatgcc
     3241 actgctttaa tgtttgtggc ttataccggt tatgggagaa ttgcaacatt agcggaagag
     3301 gttaaaaatc caggaaaatt tattcctgca gcgattatta tcactctgat ggtgagcgcc
     3361 gtactttata ttctggtggg tcttgttgct attggagctg taggggttga aaaactggcc
     3421 caagtgactg aaacaaacgc aactccttta gagagcgcgg cacgagccat tggtatcccc
     3481 ggattgagtg ttctggtctc cattggggca tgcacggcca tgttaggggt attactcaat
     3541 ttaatacttg ggttatctcg tgtggcttta gctatgggta gaaaaggcga tttaccgaag
     3601 atgttttgct atgtatcaga aacaaggcat gttcctgttt ccgctgtcat tggagttgga
     3661 gttgtaatta ttgctctggt attgactgga agtgttgaaa caacatggac tttcagtgcg
     3721 tttacagttt taatctatta cgcaattact aacctcgctg ccttgcattt gcctaaagag
     3781 gagcaattgt atccacctct gtttgctatc ggaggcttac tgtcctgcct tttcctggcg
     3841 ttttgggttc caattggagt atggataacg ggaatcagtt tacttttcct ggggcttctt
     3901 tggaaagttg ttgccaatcg ttttttataa aggcaagaaa aaaagacgga tgtattctag
     3961 aataaacaag aagatcagag aaaaggaacc gcaatgatcg atggaattat ggttttatgg
     4021 tttattttac tgatgctctc tttggctttt attgcttatg atgtgaggga gatgccaatt
     4081 gattgggtgc aaaaactagg atgggtattg gtcgtggctt ataccggccc tttaggcttg
     4141 tttttttatt ttttgacttg cagaagccca ggtaaaggat tgcatgcttt atataccaaa
     4201 gcgcaatgga aacaggcggt taattccgaa gttcattgtc tggctggtga tgcgacaggg
     4261 atcatcttcg cggcaatttt tttatctttt attgatttaa gcaatggtgt agagcttatt
     4321 ctcgagtata tttcagcctt tttctttggt tgggttattt ttcaggctgg aatgatgaga
     4381 agtatgtatt caagctatgg agaagcttta aggaaaacat tttttgcaga aaccatatct
     4441 atgaattttg tgatgatggg tatgattcct gtgatgatga ttttaatgaa cacattagac
     4501 tatggacgca acccggcaca tttgcaattt tggtttatta tgggaatggc tactgtagtc
     4561 ggtggttttc tggcttttcc aattaataac tggttggtta agaaaaaatt aaagcatgga
     4621 tgtatgactt tgccagaggg ggacgaacaa atcgaagggc atatgaccca tcatcatgga
     4681 ggtcatgaag agcatctaca ggcacaagct aaaagaattg gttcgaaagt cattcatgga
     4741 cacacccacg aaatgggaag cttaccatta aacattcaat tgaaatatat cggtataagt
     4801 tttggagttt tattgattat tgttttgata atggcctttt ttgttccatt gaaaatataa
     4861 cagagatttt tattaaatct gaacaatgtt ggattaaaat aatccaacat tgttttcgtc
     4921 ttattgcatg gttcttgata ttgcttttcc agttgcttta atatcttgtt tagctcctgt
     4981 tacagtcccc ttgacagtat ggcatgcagc taatagagca atgctgatac tgagagcccc
     5041 taacttgatt aaattccttt ttaagttaaa cataactcct cctttatact tataattcat
     5101 ttgaatttta aacgcccgtt ttttacttgc tgctgtatgt cttggacaat tggaggcacg
     5161 caggttgtta aacgagccat ataaaaatca aataattacg ttggtatttt tagttaattt
     5221 tcataaaaag aattctttac ataaagaata gaagagtatt cttaattttc aagatacaat
     5281 ttctatccaa tgaaacagtc gggatttacg aaaaaagtaa tcgccagaat tcgctcttgt
     5341 tacaaaatta tttgtaggta ataaaactga tacgccccgt tcgctccaaa cgagcttctt
     5401 tcactgttgt caaatcactt gcatttaatt tttctctgaa aacctgcctc aaatcttctt
     5461 cagtcacttg atgtcttttc aaagcactcc aaatgagctg cccatcttgt attaatagca
     5521 ccgatttccc tttaaccagt tttccaaatc cgtgggaata aaaggaacaa agagcaaaga
     5581 tccaatgtaa aaaaataagt aaactgctcc cagccattgc agatattaaa gtagagttgc
     5641 cattaattgc acgacttaac acggcgccaa tgacaaatac aaaaatataa tcaaatgctg
     5701 tttcaaaatt gaatcgggta ttgc
//
LOCUS       DACVWI010000178         5700 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.178, whole genome shotgun sequence.
ACCESSION   DACVWI010000178 DACVWI010000000
VERSION     DACVWI010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5700
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.178"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            81..848
                     /locus_tag="JBH85_12215"
     CDS             81..848
                     /locus_tag="JBH85_12215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(G),N(G)-dimethylarginine
                     dimethylaminohydrolase"
                     /protein_id="HAU0946965.1"
                     /translation="MFKNAIVRTPSSTMINGLTTSADLGKPNYELALIQHQNYIKALS
                     TCGLEVTVLPDLEQFPDACFVEDVSLLTEQFAVLTCPGAESRRDEVQEIEPSIQAFFK
                     DRIFRISTPGRLEAGDVLRIDNHFFIGLSERTNKEGAEQLIYLLNQHGYTASVIQLKK
                     FLHLKTGVSYLNNDYVLVSGELINHQAFGHLKQIVVSHEEAYAANCIMINETVLLPKG
                     CPKITHRLSELGFSIIELDMSEFRKLDGGLSCLSLRF"
     gene            827..2164
                     /locus_tag="JBH85_12220"
     CDS             827..2164
                     /locus_tag="JBH85_12220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HAU0946966.1"
                     /translation="MLVVEILMKSRLSVLSLALITVCSVDSIRNLPAAALAGNQLFYY
                     FALALLFFLLPCAIVAVWFSRQSEQGVYGWVKQGLGNQWAFIAIWFQCIQNVLIYPTL
                     LSFIAGTLLYSISPDLVQNKSMLFLIIIFLIWSLTWINLKGIHLSSRFNSYCSITGLI
                     LPFIIILFVGLYWWITQVKPGTTVLPPAEPYSWTSLTAIILSFCGIELAAVHARDSKQ
                     GAFPKAIAISVITIFLTMLFGSIVLAMIIPPEQLNFISSIPQLIQLFFNKIGYGYFAF
                     IINGLIAIGCIGAANNWLIAPIKGLEFAINEGFLNRQLSQVNKHNAPFRLLVAQAFCV
                     SIISALFLIVPSINASYWIMLNAATQINLLMYLLLFISAIKIVSSKPILSKLNIMIPA
                     YLGLAGSGITLIVSLTPPPSLAISSKLIYALLGAIFLVIMTLIPIWRRPRVLT"
     gene            2294..3337
                     /locus_tag="JBH85_12225"
     CDS             2294..3337
                     /locus_tag="JBH85_12225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2157 domain-containing protein"
                     /protein_id="HAU0946967.1"
                     /translation="MMMKLTRNMIAQAVQAKIITEEQAKNLIEFIKNLPEQTPGFNLT
                     NVLYYFGGLIAIGAMTLFMNLGWELFGGWGIFYLSICYALLGLGLCSQFNGKGYVIPA
                     GICATFVICLTPLAIYGLQKGMGWWPDDSVYHDYHVYIKWHWIFMELGTLMVGTILAW
                     IYRYPFMIMPIAVTLWYMSMDIAAMLGDGQFDFELRAMVSMYFGLITILIAFWVDVRS
                     SQSADYAFWLYIFGVMAFWFGLSCQSSDSEISKFIYMCINLFMILTGVILNRKVFVIF
                     GALGCSYYLGHLAFQVFKFSMLFPVALTAIGFGIIYLGIIWQKNEAKLTKELRSILPK
                     PLRDLLEARDSMD"
     gene            3475..4956
                     /gene="legL3"
                     /locus_tag="JBH85_12230"
     CDS             3475..4956
                     /gene="legL3"
                     /locus_tag="JBH85_12230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegL3"
                     /protein_id="HAU0946968.1"
                     /translation="MLTLSLAKCINATKNGAFAIKDLDLSGPLSYEDVLFLAEYLKVT
                     PLTDLDLSMAITRENSKALWDLSQVIAKNSQLQKLTFEVQLDFDFYFKHNLPIGWLDF
                     IDDYRLKKIAAPLHEALVNMLKNKPALNKLTIDFLVMETPFHNKHLNQLARSINKIPL
                     NYLNLGLSVTKETQVPLFKTKEPNQTLEFLILRGFNSGRNTLKYLPQTAALKMLAIDD
                     MQFEEHDLKLLANIMKSNSSLVALILGKTNLGQVNSPDVLTWLSACPNLNSLILIDNN
                     LSRLNVDSLCELLANNLQALKKLDLSKNAYMGDDAIKIAKALTFNTHIETLVLDDNYI
                     ENEGLQAFIDLVKNNKNITSLSISNTCRYTPSNEIIHSLCDLLRDPGCQLKELKFNQD
                     ITLAQYLMLQHALNSNKTLEYIDFNFRNQNILEAILGKNNSGNLNENEFSSDNPKEEK
                     APNTLNTDPTSKSAPLFFISPKSRQEENKNELSSLPSHSVHLH"
     gene            complement(5050..>5700)
                     /locus_tag="JBH85_12235"
     CDS             complement(5050..>5700)
                     /locus_tag="JBH85_12235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1661 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946969.1"
                     /translation="QVPVPGYGANQLTKDGSWVSYFDQLFFSASHLYEKTYDPEGFLS
                     TFTSIATTLSGVLAGSLLISPCNQFKKFYLLAGIGLLFLLLGWLWNMSFPINKNLWTS
                     SYVLWTSGLALLAFAFCYLLIDRFGVKKWSVFFKVFGMNALFAFVFHVLLLKLQYAFK
                     ITTPDGSKMVLISYLKDYFFGGFSNHNAALLYSICFLFLNFLVVLILYKRNVFIRI"
BASE COUNT         1779 a         1044 c         1045 g         1832 t
ORIGIN      
        1 caatgattgc attttgaaga ctctttgttt aatctctggc tgcgtgtgta ttggaaatca
       61 cttatttaag gacatgatga atgtttaaaa atgctatagt aagaacacca tcttctacaa
      121 tgatcaatgg actaaccaca tcggctgatt tggggaaacc caattatgag cttgcattaa
      181 tacagcatca aaattatatc aaagcactat caacatgtgg tcttgaagtg acagtgcttc
      241 cagatctaga acaattcccg gatgcttgtt ttgtagaaga cgtgtcatta ttaactgaac
      301 aatttgctgt cttgacatgc cctggcgcag agtccaggcg agatgaagtt caggaaattg
      361 aacccagcat tcaagcattc tttaaagaca ggattttcag aataagcacg cctggcagac
      421 ttgaggctgg agatgtgctt agaatagaca atcatttttt tattggtctc tcagaaagaa
      481 ctaacaaaga gggggctgag caactaattt atttactgaa tcagcatggc tatacagcct
      541 cagtaattca gctaaaaaaa tttctgcatc ttaaaacagg agtgagttac ctgaataatg
      601 attatgtatt ggttagtgga gaattaatca atcatcaagc atttggtcat ttaaaacaaa
      661 tagtagtaag tcatgaagaa gcgtacgcag ctaattgcat tatgattaat gagactgtgt
      721 tattacccaa agggtgtcct aaaataaccc atcgtttatc cgaactgggg ttttcaatta
      781 ttgaattgga tatgagcgaa tttagaaagt tggatggtgg tttaagctgc ttgtcgttga
      841 gattttaatg aaaagccgct tatctgtttt aagtcttgcc ttaatcactg tttgctcggt
      901 tgatagcatt agaaatcttc cagcagccgc tttagcgggg aaccagctgt tttattactt
      961 tgcattggcc ttgctattct ttcttctccc ttgcgccatt gttgcagttt ggttctccag
     1021 gcaatcagaa caaggtgtgt atgggtgggt aaaacaagga ctagggaatc agtgggcatt
     1081 catcgccatt tggtttcaat gtattcagaa tgttttaatt taccctacct tattgagttt
     1141 tattgctggc accctgctct acagcatctc ccctgattta gttcaaaaca aaagtatgct
     1201 ttttctaatt attatttttt tgatttggag tttaacctgg attaatttaa aaggaattca
     1261 tctctcaagt cgttttaact cttattgctc cataacggga ttaattcttc cttttattat
     1321 tatcctgttc gtgggattgt actggtggat tacgcaggtt aaacctggta ccacagttct
     1381 accaccagcc gaaccttatt cctggacttc gcttactgca attattttgt cattttgcgg
     1441 tattgaatta gccgcggttc acgcacggga cagtaaacaa ggggctttcc ctaaagccat
     1501 agctatttca gttattacaa tctttctgac gatgttattt ggttcgatcg tattggctat
     1561 gatcattccc ccagaacaat taaattttat cagcagcatt ccccagctca tacaattatt
     1621 ttttaataaa attggttatg gatattttgc ctttattatt aatggattga tcgcaatagg
     1681 ttgtataggt gcagcaaata actggctcat tgcacctata aaaggattag aatttgcaat
     1741 aaacgaaggg ttcttaaata ggcaactcag tcaagtgaat aaacataacg cacctttcag
     1801 attgttagtc gcacaagctt tctgtgtatc gattattagt gctttatttc ttatcgtacc
     1861 ttcgattaat gcatcttact ggatcatgtt gaatgcagcg acacaaatta atttattaat
     1921 gtacctcttg ctcttcatta gcgctatcaa aatagtttcc tcaaaaccga ttttaagtaa
     1981 gctaaatata atgattcccg cttacctggg gttggcaggc agtggcatta ccttaattgt
     2041 aagtttgacg ccaccgccat cactcgccat tagctccaaa ttgatttatg cattgcttgg
     2101 cgcaattttc ctggtcataa tgaccttgat tcctatttgg aggagaccta gagttcttac
     2161 atgaaaagaa atatccaatc ctgatttgca aattcagacg caagtttcat actctcagct
     2221 ataattgaga tattaatcat tagttattgt aaaatcaggt taaattttag caggaattca
     2281 gtactcatcg gagatgatga tgaaattgac acggaatatg attgctcagg ctgtccaggc
     2341 taaaataatt acagaggaac aggccaagaa cctcattgaa ttcataaaaa atcttcccga
     2401 acaaactcca ggatttaact taaccaatgt cctttattat tttggaggac ttatagctat
     2461 tggtgcaatg actttgttta tgaatcttgg atgggaactg tttggaggct ggggtatttt
     2521 ctatttgtca atttgttatg ccctactcgg cctaggcctt tgcagtcaat tcaatgggaa
     2581 aggatatgtc attcctgctg gcatttgcgc tacttttgtc atttgcctta ctcctttggc
     2641 aatctatggc ttacaaaaag gaatgggctg gtggccagat gacagcgttt atcatgacta
     2701 tcatgtttat atcaaatggc attggatctt catggagttg ggtacgctaa tggtaggtac
     2761 tatcctggcc tggatatatc ggtatccttt tatgattatg ccaattgcgg tcactctttg
     2821 gtatatgtcc atggatatag cagccatgtt gggtgacggt caatttgatt ttgagctaag
     2881 ggcaatggtt tcaatgtact ttggcttaat tactatattg attgcctttt gggttgatgt
     2941 tcgatccagt caatcagcag attatgcttt ttggctgtat atattcggtg tcatggcttt
     3001 ttggttcggt ttaagctgcc aatcctccga cagtgaaata tccaaattta tctatatgtg
     3061 cattaacctc ttcatgattc tgactggagt cattttaaac agaaaagtat tcgttatttt
     3121 tggtgcgtta ggatgttctt attatctggg tcatctggca tttcaggtgt ttaaattcag
     3181 tatgcttttc cctgttgctt tgactgccat aggttttggt atcatttatt taggaataat
     3241 ctggcaaaaa aatgaagcga aacttactaa agagcttcga tccatacttc ccaaaccatt
     3301 aagagactta ttggaagcaa gggacagtat ggattaatga aatattttct cacgtcctat
     3361 cacattctat tactctttag ataaattgta ggtaactctt tactttcaac tacctgaagt
     3421 agaagataga tgagttcatc attattttct ttcaaaagga cttgaggagt aattatgtta
     3481 actttatcac ttgccaaatg tattaatgca acaaagaatg gggcattcgc tatcaaagat
     3541 ttggatttat caggccctct atcttatgaa gatgtattat ttttagctga atatctaaaa
     3601 gtcacaccct taacagatct tgacttgtca atggccatca ctagggaaaa ctctaaagcg
     3661 ctatgggatt taagtcaggt tattgctaaa aattcacagc tacaaaaact aacatttgaa
     3721 gtgcaactgg acttcgattt ctattttaaa cataacctgc caattggttg gttagatttt
     3781 atagacgatt atcggttaaa aaaaatagcg gcgccactcc atgaggcatt ggttaacatg
     3841 ctaaaaaaca aacctgctct aaataagcta actatagact ttttagtgat ggaaactcct
     3901 tttcacaata aacatctcaa ccagttagca cgatctatca ataaaatccc gcttaattat
     3961 ttgaatttgg gcctttcagt gaccaaagaa acacaagtcc cgctatttaa gacgaaagaa
     4021 ccgaatcaaa ctcttgagtt cctaatcctt cgtggtttta attcaggtag aaataccttg
     4081 aaatatttac cccaaacagc agccttaaaa atgttagcta ttgatgacat gcaattcgaa
     4141 gaacatgatt tgaagttgct ggctaatatt atgaaatcca actcgtcact ggttgcttta
     4201 atccttggta aaactaatct tggacaagtc aattcgccag acgtactcac ctggctcagt
     4261 gcatgcccca atttaaatag tcttatactc attgacaata atctaagcag gcttaatgtg
     4321 gatagtttat gcgaattatt agcgaataat ctccaggctt tgaaaaaact ggatctgtcc
     4381 aaaaatgctt atatgggtga cgacgcgata aagattgcca aagcgttaac tttcaatact
     4441 catattgaaa cattggtgct ggatgataac tatattgaaa atgaggggct acaagccttc
     4501 atcgatctgg taaaaaacaa taaaaatata acgtctctat ctatttcaaa cacctgtcga
     4561 tatacacctt ctaacgaaat aattcacagt ctatgtgatt tattacgtga tcctggatgt
     4621 caattaaaag aactaaaatt taaccaggat attactttgg cacagtacct tatgctgcaa
     4681 catgccctaa actctaacaa aacactagaa tacattgatt tcaattttag aaatcagaat
     4741 attcttgagg caattcttgg gaaaaataat tccggtaatt tgaatgaaaa tgagttttca
     4801 agtgacaatc ctaaagaaga aaaagcccca aatactttga atacggatcc tactagcaaa
     4861 agtgctccat tattttttat ttccccaaag agtcggcaag aagagaataa aaatgaactt
     4921 tcttctttac cgagtcatag tgtccatctc cattagggat aatacacatt acactcaatt
     4981 ataatttctc actagcgatg tacacagttg gcgctgagca atctgcgagg cccaaccaac
     5041 cttacctctt tatattcgaa taaatacatt acgtttatat aaaatcaaaa caaccagaaa
     5101 attcaggaaa agaaaacaga tagaatacag caatgctgca ttgtgattac tgaatcctcc
     5161 aaaaaaataa tctttgagat aggatatcaa taccatttta gagccatcag gtgttgttat
     5221 tttaaaagca tattgcagtt ttaaaagaag gacatgaaat acaaaagcaa ataatgcatt
     5281 catgccaaat actttaaaaa aaacggacca ttttttaacc ccaaatctat caatcagcaa
     5341 atagcaaaag gcaaaggcaa gcagagccag gccgctggtc cagagtacgt aagagctagt
     5401 ccataaattt ttattaatag gaaaactcat attccataac catcccaata acaaaaatag
     5461 caagccaatc cctgctaata gataaaattt cttgaattga ttgcatggac taattagtaa
     5521 actaccggcc aggacacctg ataaagtagt ggcaatagat gtaaaagtac ttaaaaaacc
     5581 ttcgggatca tacgtttttt catataagtg ggaagctgaa aaaaataact ggtcaaagta
     5641 tgaaacccaa cttccgtctt tggttaattg atttgctcca tatcctggga caggtacttg
//
LOCUS       DACVWI010000179         5690 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.179, whole genome shotgun sequence.
ACCESSION   DACVWI010000179 DACVWI010000000
VERSION     DACVWI010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5690
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.179"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(119..844)
                     /locus_tag="JBH85_12240"
     CDS             complement(119..844)
                     /locus_tag="JBH85_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg0172 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946970.1"
                     /translation="MLYNKWGYLMTTLYIKNLRYNEVAVCRALFEAAEKTEEGIKTKR
                     YGMQMTADMPGLWSPLSNYDIENDLRMARVHRNGRMREIGYLTVNLVFQFDSLDVTEY
                     ETKYGISAKDVLEKAGFTCSQDAAGYSEPASTSTRLLGQESKPEKPTQTSVVNTSFFA
                     LKNVDTDKRFTKSTKLGILYEARSYGKIEDDTLKSYGFTDGQWERQKEGIENIVIIKK
                     LTQSISQGPAVLDEAVDNIPTLS"
     gene            1034..1600
                     /locus_tag="JBH85_12245"
     CDS             1034..1600
                     /locus_tag="JBH85_12245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F-box protein"
                     /protein_id="HAU0946971.1"
                     /translation="MKAKYDPTKPGLQKLPPEIKVMILEFLDAKSKLALSQTNYGWRD
                     LILDRPEYTKEITNTLFRLDKKRHRQAIAQMMSGRVTASSMAKLFEELLCFSIPSSYV
                     FLIFFASQKSVALIEVLTVILVFAAITSLAHDLVDYFIESDTKAEKQHAHRRAFQFFA
                     QPSQSAAQQNLEEENLSADPKACQCEPL"
     gene            1866..2621
                     /locus_tag="JBH85_12250"
     CDS             1866..2621
                     /locus_tag="JBH85_12250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0946972.1"
                     /translation="MYVFRRFSKPIITFLHSLELAFRFLGHLVHSTIKVIFGKLSIVW
                     PNTLEMIYYSGARLVILLSFIGILLGATVSQTVYALLKPFQLHQRVLPIVQNILTHEI
                     LPVLIGFILCIQAALHMVNTRLEHYQENPEAIILAQVLPIIVGMNIASLLLYVYLVSA
                     IFFSFYLTFHFMLGFTNNEFLSYVVSSTTLFDLIYSVVKTLILCIIVGLTSGYYYYEA
                     SIRHIYLRKAVSRILTRGSFWLIIASMYITLTF"
     gene            2590..3375
                     /locus_tag="JBH85_12255"
     CDS             2590..3375
                     /locus_tag="JBH85_12255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HAU0946973.1"
                     /translation="MPVCILLLRFRDDVHNERFYTLVGIFIVGALCLMILGGTFFYIE
                     YKRAQKQTFVMFFKGSLKGLVTTAPVTYRGVKIGEVKVIEITENKEHSKVLIPVYVQF
                     FVERTYGFSQDPIHLLIDNGYVANITKPNLLTGVAEIELIKPTPAVKYKQTYYHSYPV
                     FPTHNSAEKYTSMEEAFEAAKKAFEDVSELVRSKEIQDTLEAIQKVSENLGQLASSLN
                     QDVPSVVAYLNQSLKQITSAAYSTQNLTDYLSRYPESLLRGKR"
     gene            3372..4097
                     /locus_tag="JBH85_12260"
     CDS             3372..4097
                     /locus_tag="JBH85_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HAU0946974.1"
                     /translation="MKNNRHFLKFYCIRDLSWLSSVRASFIYSPFERITSSPFSSYIE
                     LRKKPVKFLLILLIALTLCDCGRSKETQFYLLTPIPPQKNSRNSYNHLQIGVDEVSIP
                     DYMKKPQLMIHQTAHHLTLEEFNQWAGALDKNITLVLTTNLSTLMPGVVVQTSPWNNK
                     FHPDYHLQVMISQFEIDIHGNSILRAEYLIYRKEELIYKGNAYYHIKVPLISIETLVQ
                     SMNTNLTHLTEEIARFFIKNTTK"
     gene            4198..4608
                     /locus_tag="JBH85_12265"
     CDS             4198..4608
                     /locus_tag="JBH85_12265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor-like protein"
                     /protein_id="HAU0946975.1"
                     /translation="MIGKDKWEILTEKMTNLHIYETDLSEKFILGSGKGGQKLHKTAS
                     TVYLKHLPTGMEVKCQESRSREDNRYFARQRLCEKLQAVFSDEKTKTQQRIEKIKRQK
                     KRRSRRSKQKMLDEKSRQSQLKTLRKSPRSHDIE"
     gene            4883..>5690
                     /locus_tag="JBH85_12270"
     CDS             4883..>5690
                     /locus_tag="JBH85_12270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HAU0946976.1"
                     /translation="MAGTSLLTLIDDIATALDDIAAMTKVATKKTAGVLGDDLALNAE
                     QIIGIHANRELPVIGAVAKGSAVNKLILIPLAILINFFVPALVGILLILGGLYLCFEG
                     FEKIVEKIFHKKNEPAKKKTDTQTIDMRQFEKEKISGAVRTDFVLSAEIIVITLGTVA
                     ATSLINQIAVLTLISLIMTIGVYGLVACIVKLDDLGFILREKKHPLKQIGILLIGAAP
                     ILMKILSVAGTIAMFLVGGGIITHQITAIHHFTENLSAMMSIGVDFFIGII"
BASE COUNT         1796 a         1068 c          986 g         1840 t
ORIGIN      
        1 caatgatttt tgcttatttt ttgaggtaat agaatttatt gcaaaaaata taaaacaccg
       61 aaattgattg ataatagacc attatttttc aatttcagta ttttaaaatt aatgctcttt
      121 aggatagtgt tggaatatta tcaacggctt catccaaaac ggctgggcct tgagaaatac
      181 tctgggtaag ttttttaata atcactatat tctcgatgcc ttctttctgc ctttcccatt
      241 gtccgtcggt aaaaccatag cttttcaaag tatcatcttc tattttaccg taggatcttg
      301 cctcgtataa tattcctagt tttgtcgact tggtaaatct tttatctgta tccacattct
      361 ttagagcaaa aaatgaggta ttaacaacac ttgtttgggt tggtttttcg ggtttgcttt
      421 cttggcctaa taaccttgtt gaagttgaag caggctcaga ataacccgca gcatcttgac
      481 tgcatgtaaa gccggctttt tctaaaacgt cttttgctga aatgccatat tttgtttcat
      541 actctgtaac atcgaggcta tcaaattgaa atacaagatt aactgtcaaa tatccaattt
      601 ccctcattct tccattgcga tgaactcttg ccattctgag atcattctca atgtcataat
      661 tagaaagagg agaccataaa ccaggcatat cagccgtcat ttgcatgcca tatctcttgg
      721 tctttattcc ttcttcagtc ttttcagccg cttcaaataa ggcacgacag actgctactt
      781 cattatatct taaatttttt atgtaaagcg ttgtcattag ataaccccat ttattgtaaa
      841 gcaggcattt tatccatttt tgctcaaaat aaaagcgttt ttaccgattg gacttaatga
      901 aaacgcatta cttactcccg catatcaata ttttatatag ctcctataca aataaatcat
      961 ttttgacaca atgcaaaacc acctaaaata aattttaatt ttttcaaaaa ttaaataatt
     1021 taggttattc actatgaaag caaaatacga ccccacaaag cctggactcc aaaagttacc
     1081 tcctgaaatc aaggtaatga ttcttgagtt tcttgatgcc aaatcaaaac tagctctttc
     1141 acagacaaat tatggttggc gtgatttaat tctagaccgg ccagaatata ccaaagaaat
     1201 aacgaataca ttatttcgtc ttgataaaaa acgccatcgt caagcaatag cacaaatgat
     1261 gtcaggaaga gttacagcaa gttctatggc taagctattt gaagaattac tatgttttag
     1321 cataccttcg tcctatgtgt ttttaatctt tttcgcatcg caaaaatctg tggcgcttat
     1381 agaagtctta accgtaatcc ttgtgtttgc tgcaataacc tctctcgccc atgatctggt
     1441 ggattatttt attgaaagtg atacaaaagc tgagaaacag catgcacatc gccgtgcttt
     1501 tcaattcttt gcccaaccca gtcaaagcgc tgcacaacaa aacttggagg aagagaattt
     1561 aagtgctgat cccaaggcct gccaatgtga gccattgtag ttggggtctt ggcccgatat
     1621 ttaccgaatt cctctactta attcttcgat gtttattata tttacaacct tattttgatc
     1681 ctccactcac ccgaatatca ctagcaacaa accaaacaga atgttattct tagctgtagt
     1741 aaaagagcaa aaagtctcac tgctattgag ttaagaatta actccttttt gcctgatgca
     1801 agcatcttgc taacgaagct attattcttt tcgcggcatt ttgaaagagg actaatggat
     1861 tagccatgta tgtttttcgc cgtttttcga agcctattat tacttttctc cattcgcttg
     1921 agctcgcttt tcgattttta ggccatttgg ttcatagcac tatcaaagtt atttttggca
     1981 aactgtccat cgtctggcct aacacactag aaatgattta ctattctgga gcgcggcttg
     2041 ttattctact gagttttatt ggtatattat taggcgctac tgtttcacaa acggtttatg
     2101 cgctcttaaa accttttcag ctacatcaac gagtacttcc cattgtgcaa aatattttaa
     2161 cccatgaaat attaccggta cttattggct tcattttatg tatccaagcc gccttgcata
     2221 tggttaacac ccgtttggag cattaccagg agaatccaga ggcaattatc cttgctcaag
     2281 tattaccaat cattgtaggt atgaacattg cctccttact gctatacgtt tatcttgtat
     2341 ccgctatctt ttttagtttt tatctcactt ttcattttat gttagggttt acaaacaatg
     2401 aatttttatc ctatgttgtc agctcgacaa ccttatttga tctgatatac tcggtcgtta
     2461 agacattgat tttatgcatc atagttgggt tgacttctgg ttattattat tatgaagcat
     2521 ctattagaca tatttatttg agaaaagcag tttctcgaat tttaacgcgt ggctcattct
     2581 ggctgatcat tgccagtatg tatattactc ttacgtttta gggacgacgt gcataacgaa
     2641 cgattctata cattagtggg tatttttata gtaggcgccc tatgtttaat gattctaggc
     2701 ggtacttttt tttatataga atacaaacgc gcacaaaaac aaacttttgt catgtttttc
     2761 aaaggctctt taaaagggct agtcactact gccccagtaa cctatcgagg cgtgaagatt
     2821 ggtgaagtca aagtcataga aatcactgaa aataaagagc acagtaaagt acttattcct
     2881 gtttacgtac aattttttgt cgagagaacc tatggtttta gccaagaccc tattcacctg
     2941 cttattgata atgggtatgt agcaaatatc accaaaccta acctgttaac aggcgttgct
     3001 gaaattgagt tgattaagcc aaccccagcg gtaaaatata aacaaacata ctaccattct
     3061 tatcctgttt tcccgactca caattcagct gaaaaatata catctatgga agaagcgttt
     3121 gaggccgcga aaaaggcttt tgaagacgtc agtgaattag ttcgttccaa agaaattcaa
     3181 gatactttag aggcgataca aaaagtttct gaaaatttag ggcaactagc ctctagctta
     3241 aaccaagatg tgccgagtgt tgttgcgtat ttaaatcaaa gcttaaaaca aattaccagt
     3301 gcagcttact ccactcaaaa cttgacggat tatttgtctc gatatcctga atctttactt
     3361 cgaggcaaaa gatgaaaaac aatagacatt ttttaaaatt ctattgcatc agagatttga
     3421 gttggctaag tagtgttcga gcctctttta tatattcccc atttgaacgc atcacatcct
     3481 cgcctttttc tagctatatt gagcttcgaa agaaacctgt gaagttcctg ttaatcttgc
     3541 tcattgcctt aacactctgc gattgcggtc gaagcaaaga aactcaattt tatttattaa
     3601 cacctattcc ccctcaaaaa aacagccgta actcctataa tcatttacag atcggtgttg
     3661 atgaagtgag tattcctgat tatatgaaaa aacctcaatt aatgattcac cagacagctc
     3721 atcacctaac tctcgaagaa tttaaccaat gggctggggc cttggataag aatattactc
     3781 ttgtattaac tactaatctt tcaactttaa tgccaggagt agtagttcag acctcacctt
     3841 ggaacaataa attccacccg gattatcatc ttcaagtaat gatttcacaa tttgaaattg
     3901 atattcatgg taacagtatt ttaagagccg aataccttat ttaccgaaaa gaagagttaa
     3961 tctacaaagg aaatgcttat taccatatta aagtcccttt aatcagtatt gaaacgcttg
     4021 tgcagagcat gaatacgaac ctgactcatt taactgaaga aattgcacgg ttttttataa
     4081 aaaacacgac taagtaatat actcatagtg tcttcaaatc aagaaaaatt attttgattg
     4141 aattcagcta ttataatgct ttaaaggcat tattttatgg gataataaag agacttcatg
     4201 attggcaaag ataaatggga aatactgact gagaagatga ccaatcttca tatctatgaa
     4261 acagatctca gcgaaaaatt tatactaggc agtggcaaag gcggacaaaa actacataaa
     4321 acggcatcaa cagtctattt gaaacatttg cctaccggta tggaagtaaa atgccaggaa
     4381 tccaggagtc gtgaagataa ccgctatttt gcgaggcaac ggctttgtga gaaattacaa
     4441 gccgtattca gcgatgaaaa aacaaagaca caacaaagaa ttgaaaagat aaaacgccag
     4501 aagaagagac gttcaagaag atccaaacaa aaaatgctgg atgaaaaatc aagacagagc
     4561 caactcaaga cactaagaaa aagcccccga tctcatgaca ttgaataata ggcacattaa
     4621 ccacttatca ttttagttaa ttagttaaat caaaatatcc gacaacgtcc ctaaagtttt
     4681 ttgtagattc ctgaacttta accaaggggc attattttca gtttgcttcg atcaattcct
     4741 tctcacacgt ctggtgattt taaaattgaa atttttatat cgtcaggttc gagtctttga
     4801 aacggagata agacatcttt ttgcaatgct ttgaatttgt tttagtattg aaaggaatca
     4861 ttaaattaag gtcagatccg atatggcagg aacaagttta ctaacattga ttgacgatat
     4921 tgcaacggca ctggatgaca tagctgccat gactaaagtg gcaactaaaa aaactgccgg
     4981 tgtgttgggc gatgacttgg cactcaacgc cgagcaaata ataggcatac atgcgaacag
     5041 agaattacct gtcataggag ctgtagccaa aggctctgct gttaataaat taatattaat
     5101 tccattagcg attttaataa attttttcgt ccccgcactg gtgggtatcc tattgatttt
     5161 gggcggattg tatttgtgtt ttgaaggttt tgaaaaaatt gtagaaaaaa ttttccataa
     5221 aaaaaatgag cctgcaaaaa agaaaacaga tacgcagacc atcgatatgc gccaatttga
     5281 aaaagaaaaa attagcggtg ctgtacggac ggattttgta ttatcagctg aaatcattgt
     5341 aatcacctta ggcacggtcg cggcgacatc tctgattaac caaatagcgg tattaacttt
     5401 gatttcatta attatgacca ttggagttta tggtttggtt gcgtgcattg tcaaattgga
     5461 tgatctgggc ttcattttac gggaaaaaaa gcacccactt aaacaaattg gaattctttt
     5521 gattggagca gccccaatac ttatgaaaat tttaagtgtg gcaggaacaa ttgccatgtt
     5581 tttagtagga ggggggatta ttactcatca aataactgcc attcatcatt tcacagaaaa
     5641 cctgtctgca atgatgtcta taggagttga tttttttata ggaattattt
//
LOCUS       DACVWI010000180         5666 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.180, whole genome shotgun sequence.
ACCESSION   DACVWI010000180 DACVWI010000000
VERSION     DACVWI010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5666
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.180"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            752..2686
                     /locus_tag="JBH85_12275"
     CDS             752..2686
                     /locus_tag="JBH85_12275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primary-amine oxidase"
                     /protein_id="HAU0946977.1"
                     /translation="MHVLDPLTLEEIQESCDILKREKELSDSYRFAWVMTYEPPQQEV
                     LHSSDTDFDRCAFLSVFNKKTNETFEAVVNLNSKKVVEWKQIVFEAPPYGKPPILIED
                     FQKCEQIVKADPTWRAAMEKRGLDDEQIDNIQVDAFSAGYFDEEEEREQRIVKGISFY
                     RDNLKDNGYARPIEGVVAIVDLGNEKVLRVIDDGRNVPIPKEKINYDSDSYPEKRKDL
                     KPLDIIQAEGPSFKVNGWEVNWQNWSFHVGFTPREGLVLHQIKYLDEGKERPIIYRAS
                     VTDMIVPYADPSVSHYWKSAFDAGEYGLGKLANELKLGCDCLGNIYYFDVPAADDFGN
                     SRLIKNAICMHEEDAGTLWKHYETRNSTFEVRRARELVVSFFTTIGNYDYGFYWRFGQ
                     DGSLKLEIKLTGIVQTAAIFPEAQYEWGGKLTPELAAPTHQHFFNARLHMMVDGEKNS
                     FSEHEFYPIAMGGKNPYGNAFGSSQKTFEHEGEAARSACAQTQRTWKIFNPNSVNGIG
                     TAPAYKLELPETPLLLADEESYIYKRGGFASKQVWVTQYDPQEKYAAGDYPNQSSGGC
                     GLPAYIKQNRKIDNENLVLWVTLGSTHFPRPEDFPVMPTSIISAKLHPFGFFKRNPAM
                     DLPQGKVQEKGDTCCSSLTY"
     gene            complement(2903..3091)
                     /locus_tag="JBH85_12280"
     CDS             complement(2903..3091)
                     /locus_tag="JBH85_12280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4169 family protein"
                     /protein_id="HAU0946978.1"
                     /translation="MADIINLNKKRKAKVRLEKEKKASENRIKFGRTKKEKQQEKQDN
                     ERSERHLDGHKLDKKEEN"
     gene            3753..4622
                     /locus_tag="JBH85_12285"
     CDS             3753..4622
                     /locus_tag="JBH85_12285"
                     /EC_number="1.8.4.11"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methionine sulfoxide reductase B/A
                     protein"
                     /protein_id="HAU0946979.1"
                     /translation="MSDYLDKTASLTPAIKRIVCDKATEYPHTGSYNQVATHGTYLCR
                     RCGLALFRGVSQFSSGCGWPSFDDEIANAVARKPDADGQRTEILCARCDAHLGHVFTG
                     EYMTYKNLRHCVNSASLDFVADNEVLDTEEAILAGGCFWGVEYYLKRTPGVLKVESGY
                     TGGHVSEPSYEQVCSGTSGHYEAVRVVYDAAKTNYHDIVKRFFEIHDPTQTNGQGPDL
                     GHQYLSAVFYFNQEQRQEAELLIQLLKKRGYQVVTQLLQAQPFWPAEDYHQDYYFKHH
                     KIPYCHKSVDRFG"
     gene            complement(4646..5611)
                     /locus_tag="JBH85_12290"
     CDS             complement(4646..5611)
                     /locus_tag="JBH85_12290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946980.1"
                     /translation="MAFSKSETTVDKFSLDEFPAFSAHDLEMAFSLKKKYRESKESGY
                     PFTGFVCDYERRDKLYDFIYSSCHSPKLFENNFKVQIAYLDREKSGVRHWSLIELQYS
                     IEKGNNTLKILVLDSLGAQLSYNTAQILANEVGFQDLLDENEDLSIKIYIPDVKLQHS
                     RAGCATFTMDCASMLSTQDKYENIYDFMDKQAEVSDKVKIAKLDTDFPVHCASLPPRI
                     LRGAQSRAIITDDKILNSTPYINSKEETFKHSLLKHCSFFEDQPQTPENIKRNERIMK
                     KAIKWRNTIDLKMKTSSAEEFESTCAIDDLEEYANSCLSSKSVRL"
BASE COUNT         1697 a         1060 c         1200 g         1709 t
ORIGIN      
        1 gcaacctata ttacacaata tttaagtagt atctatcgta ccccccaaat cccctgatta
       61 ttgtttagaa cgctttgcaa aaagaacaag catcctttga agtgctggat tttagtgtat
      121 aaccagagtg tattcacaga gttatccaca gaaaatgggg ataagtgatc aatgcaattg
      181 atgtatcaat acttgataag tccttgcagg acaaggggtt ttgtaaaaag agtatgatct
      241 gagctggtca tgacattgga gggtaggaat agttattcac aggaaaggag atgcacttaa
      301 tatgttaatc gctttacatc gtaacaaaaa aaaaaataaa aaaacagtct tgactaagtc
      361 aattttttgc aaaagctcct ggttaaaaat taattaaaaa aatggctgat gattttatcg
      421 atattgctac tgacccaata cggcaaatgc atggacaatt atttgattca aattgattag
      481 aatgatataa agtgcacccg taatggctgc atcgcctaat gtgatgcgcc aggagattaa
      541 ataatatacc acttttaaaa ggctagactt ttaatttgac aagcttatgt tgtattcact
      601 gattaaaaaa taccatactg cacaccgcct atccgactat tcttagcaat atcccgctat
      661 tttttatttc tatccaatta tttcaacgca ctgtctcttt aattaacgta aagagcaata
      721 tcagtttttt taatatgtaa aggatgtcaa tatgcatgtg ttagatccct taactcttga
      781 agaaattcag gaaagttgtg atattttaaa acgagaaaaa gagctctccg acagttatcg
      841 gtttgcctgg gtgatgactt acgaaccgcc tcaacaagaa gttttgcatt caagtgatac
      901 cgatttcgac cgttgtgctt ttctctctgt ttttaataaa aaaacgaatg aaacctttga
      961 agcagtcgta aacctcaaca gtaaaaaagt cgtggaatgg aaacagattg tcttcgaagc
     1021 cccgccttat ggtaagccgc ctattttaat tgaggatttt caaaaatgtg agcaaatcgt
     1081 taaagccgat ccgacctgga gagccgcgat ggaaaagcgt gggcttgatg atgaacaaat
     1141 tgacaacatt caagtagacg cattttctgc cggctatttt gatgaagagg aggagagaga
     1201 acaacggatt gtcaaaggga taagttttta ccgtgataat ttaaaggata atggttatgc
     1261 ccgtcccatt gaaggggttg tcgcgatagt agaccttggc aatgagaagg tattgcgtgt
     1321 cattgatgac ggccgcaacg tcccaattcc taaagaaaaa atcaattacg attcggattc
     1381 ttatcctgaa aaacgcaaag acttaaaacc actggatatt attcaagcag aagggccaag
     1441 ttttaaagta aacggctggg aagtcaattg gcaaaattgg tcattccatg ttgggtttac
     1501 gccgcgtgag ggattggttt tgcaccagat caaatacctg gatgaaggga aagaaaggcc
     1561 aattatttac cgggccagtg tgacggatat gatagtcccc tatgcggacc cttccgtgag
     1621 tcattactgg aaaagcgctt ttgatgcggg tgaatatggt cttggcaaat tggcaaatga
     1681 actaaagctc ggatgtgatt gtttaggcaa catttattat tttgacgttc ctgcggcgga
     1741 tgacttcggc aattccagat tgattaaaaa cgcgatttgc atgcacgagg aagacgcggg
     1801 caccctgtgg aagcattatg aaacacgcaa cagcaccttt gaggttcgcc gtgctcgtga
     1861 gctggtcgtc agctttttta ctacgatagg taactacgac tatggctttt actggcgatt
     1921 tggacaggat ggcagcctca aactggaaat aaaactgact ggtattgtac aaacagcggc
     1981 aatatttcct gaggctcagt atgaatgggg agggaaattg acaccggagc tggcagcacc
     2041 tacgcatcag cattttttca atgcccgcct tcatatgatg gttgatggtg aaaagaactc
     2101 attcagtgag cacgagtttt atcctatcgc catgggtgga aaaaatccct atggaaatgc
     2161 gtttggcagc agccagaaaa catttgaaca tgaaggtgag gcagcccgct cggcttgtgc
     2221 gcaaacccag agaacctgga agatattcaa tcccaatagc gtcaatggca ttggcacagc
     2281 acccgcttat aaactggaat tgccagaaac ccccttactg ctggcagatg aagagagtta
     2341 tatttataaa cgcgggggat ttgccagcaa gcaggtgtgg gtaacacaat atgatcctca
     2401 agaaaaatac gcggcaggag attaccccaa tcagagttcc gggggttgtg gtttgcctgc
     2461 gtacatcaaa cagaaccgta aaattgacaa tgaaaatttg gttttgtggg taacgctggg
     2521 gtctacgcat tttccaagac ccgaagactt tccggtcatg cctacttcga tcatttctgc
     2581 caagctgcat ccttttggtt tttttaagag gaatccggct atggatcttc ctcaaggcaa
     2641 agtacaggaa aaaggggata cctgctgttc ttcattaact tattaatgga ttggaaccaa
     2701 gcaccttctt gaggagaggg tgctttcctg ttggagctta aaaatcaaaa tctctcagga
     2761 cttacgaaaa accccaatct ctatgttaaa aaatgttttt aattcggtca tttagtttat
     2821 ctaaactccc tcattaaaaa catttttgcc ttgaccttgg agtttttcgt aagtcctgtc
     2881 tctattaaaa gagttcctgt ctttaatttt cctctttttt atccagcttg tgaccatcca
     2941 gatgacgttc actgcgttca ttgtcttgtt tttcttgttg cttttctttt tttgtccttc
     3001 caaattttat gcgattttca gatgcttttt tttctttttc caagcgaact ttagcctttc
     3061 tttttttatt aagattaatg atgtctgcca tggcactctc tgttgtaaga ccttgtttat
     3121 actatagcgc ataaaaccag ggcaaatcat ctcaatacac aaatcgatcg aaatagaatg
     3181 atctgaaagt atacactttg agaatgggaa ggactgtcgc aagatagcat tttcagcatt
     3241 gttttttatg acactttgca aaaagagcaa gcatcctttt aagtgctgga ttttagtcta
     3301 taaccagagt gtattcacag agttatccac agaaaatggg gataagtaat taatacaact
     3361 cacgtattaa tatttaataa atctatacag ggcaaggggt tatataaaaa gggcatggtg
     3421 tcaaatgcta atgagattaa aaataaagac aagttatcca cagaaagcga gatgctagtg
     3481 aaggtatggg acgctcatta tgataacaaa aaaaaaatta aaaaacagtc ttgactggca
     3541 caatttttta cctgaaaaag atttggatag actggcatca ggaataatgg caatacaaaa
     3601 acagctaatc ctgctataat ttttgaacaa aaggtgagcc cctgttagca ggatttttca
     3661 ctttaaatcg ttcactgacg gcttctgaga ctgatggcat agagggtgtt caggagattt
     3721 tctcatgagt cgagttttca aaggagcatg aaatgagtga ctacctcgat aaaaccgcaa
     3781 gcttaacccc agccattaaa agaatagtgt gcgacaaagc cactgaatat cctcatactg
     3841 gctcttataa tcaagtagcg actcatggca cgtatttatg caggcgctgt ggtctggcgt
     3901 tgtttcgtgg tgtcagtcaa tttagctcag gctgtggctg gcccagtttt gacgatgaaa
     3961 tagctaacgc tgtggcaagg aaaccggatg cggatggtca gcgaaccgag atattatgcg
     4021 ctcgttgtga tgctcacttg gggcatgttt tcacagggga atacatgacg tataagaatt
     4081 tacgtcattg cgttaattcc gcttcattgg attttgtcgc ggataatgaa gtactggaca
     4141 cagaagaagc catccttgca ggggggtgtt tttggggagt ggaatattat ttaaaacgaa
     4201 ctcccggagt attaaaagtc gagtcgggct atacaggtgg ccatgtttca gagccaagtt
     4261 atgagcaagt atgcagtggt acttcagggc attatgaggc tgtgcgcgtc gtctatgatg
     4321 ctgctaaaac taattatcat gacattgtaa aacgattttt tgaaattcac gacccaactc
     4381 agaccaatgg acaaggtccc gacttgggcc accaatattt aagtgccgtg ttttatttta
     4441 atcaggaaca acgccaggaa gcggagttat tgattcagtt attaaagaaa agggggtatc
     4501 aggttgtaac ccaattattg caagcacaac ccttttggcc tgctgaagac tatcatcaag
     4561 attactattt taaacaccac aaaattcctt attgccataa gtcagtcgat cgttttggct
     4621 agttgttccg gaagatttaa tctcatcata gtcgcactga tttagaagac agacaactat
     4681 tggcatattc ttcaagatca tctattgcgc acgtgctttc aaattcttct gcactgcttg
     4741 tcttcatttt caagtctatg gtgtttctcc atttgatcgc tttcttcatg attctttcat
     4801 tgcgctttat gttctctggt gtttgaggtt ggtcttcaaa aaaactacag tgctttagga
     4861 gagagtgctt gaaggtttcc tctttagaat taatatatgg ggtagagttc agaattttat
     4921 catctgtgat gatggctcgg ctttgtgcac ctcgtaatat ccgagggggt aagctggcac
     4981 aatgcaccgg aaaatcagta tcgagttttg caatttttac cttgtcactt acctcggctt
     5041 gtttgtccat aaaatcataa atattttcat atttatcctg ggtagacaac atgctggcgc
     5101 aatccatagt aaaggtggcg caccctgcgc gcgagtgctg taatttaaca tccgggatgt
     5161 agatttttat tgaaagatct tcgttttcat caagcaaatc ctggaatcca acttcattcg
     5221 ctaatatttg agcagtgtta taggataatt gtgctcccaa actgtcaagc accaaaattt
     5281 ttaaagtatt attgcccttt tcaatggaat attgcagttc aattaatgac cagtggcgca
     5341 caccggattt ctctctatcc agataggcaa tttgtacctt gaaattgttt tcaaataatt
     5401 ttggtgaatg acaactgcta taaataaaat cataaagctt atcacggcgt tcataatcac
     5461 agacaaaacc ggtaaatgga taacctgatt cttttgattc ccgatatttt ttctttaaac
     5521 taaaggccat ttccaaatca tgtgcggaaa atgcagggaa ttcgtctaga gaaaacttat
     5581 caacggttgt ttctgattta ctaaaggcca tacaaagaac cccatttgtt tgtattttta
     5641 ttatatgaaa tgtttttaca ttattc
//
LOCUS       DACVWI010000181         5640 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.181, whole genome shotgun sequence.
ACCESSION   DACVWI010000181 DACVWI010000000
VERSION     DACVWI010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5640
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.181"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(69..404)
                     /locus_tag="JBH85_12295"
     CDS             complement(69..404)
                     /locus_tag="JBH85_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-binding protein"
                     /protein_id="HAU0946981.1"
                     /translation="MTISYEEFEKVDLRSGTVVKAEPFLRARKPAYKVWVDFGADIGV
                     LQTSAQITVHYTPEALIGRIVIGCVNLGEKNIAGFLSQFLLLGFSDEKGAICLASVEP
                     HVPNGKKMH"
     gene            complement(414..1328)
                     /locus_tag="JBH85_12300"
     CDS             complement(414..1328)
                     /locus_tag="JBH85_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAU0946982.1"
                     /translation="MVIDVKKSNTYFIQGMLFLIFAQIMVGINIVFSKYVLSSIPVLY
                     ILALRFTLAAVILLLLHWLTPAKKLPMYSYFLQLKRRDWFFIFAQALSAGVLFNFLIL
                     WGLQYTDANVAGIITSALPAIIAIMSWLILGEKISGKKAICVGFATLGLVVIACDKLG
                     DINVSHSFLGDALVLTSLLPEAMYYILSKMHVNSLPVFLISSLLNGINAILLLFCLSF
                     STWDSFTIHTLDWLILIILGLSSGLFYVFWYFGCQTVDGVMASLSTAIMPLATVTIAW
                     IFLGEQLTIGQIIGMGMVILSITVYAKR"
     gene            complement(1394..2164)
                     /locus_tag="JBH85_12305"
     CDS             complement(1394..2164)
                     /locus_tag="JBH85_12305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0946983.1"
                     /translation="MLGSNMLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVG
                     HYSGVVNDDIGVYIAPNEQHCFAGSQKNLFLVIDATTQNSLRDEAFESNILNLTASTK
                     KLIQFTHHYLAHNERDFFTDSLINQLLFHFAASSFSPEPDLVVIRAKQWIDLYFADSV
                     NVNRVAKHCYLSISQLQRRFKQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEV
                     GYENLPAFSRRFSKVFGESPSQWRSKALTAKKMREIDK"
     gene            complement(2435..3004)
                     /locus_tag="JBH85_12310"
     CDS             complement(2435..3004)
                     /locus_tag="JBH85_12310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946984.1"
                     /translation="MNLMLGKWIGLIAAFLFLNTGFVQASATPIICDQEYALCTSARC
                     IPTSGNPANAVCDCIVEKGKSAGYKTCKERKPIRDRYKVTSLVSTFSFEQFAFKRKMN
                     CSEGLPWTNCLDMPCTVDPQNSKRALCLCTIENTQAFFTFGGDCNTNTCATGFWSGAT
                     QENSIILRKALMQEMRLKPKALLKDCSAK"
     gene            3132..3977
                     /locus_tag="JBH85_12315"
     CDS             3132..3977
                     /locus_tag="JBH85_12315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HAU0946985.1"
                     /translation="MTITTITSPQETRYIDLSSCYFYYSSRILAFVTWLSCGLFGIYI
                     LFFYANSLISDSASRWNNVLPNLYIKSHTASTLGIAIHFTAGGIILAMGFLQLLSTIR
                     HYAPGIHRWLGRIYVIAAALTGIGGLTFIASTGTIGGLVMDIGFGLYGLLMILCALQA
                     YRYARQLKFDNHQAWAIRLFALAIGSWLYRMEYGFWFLMTNKLWHTQTFQGPFDFVMA
                     FFFYLPNLLIAEAYLRGRSAQVSQFSKLIAGTVINLASGLLAVATYFFAKQYWLPAIW
                     GHSIR"
     gene            complement(4013..>5640)
                     /locus_tag="JBH85_12320"
     CDS             complement(4013..>5640)
                     /locus_tag="JBH85_12320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lpg2552 family Dot/Icm T4SS effector"
                     /protein_id="HAU0946986.1"
                     /translation="FANHKRPEVIMVLRRKFRTQKDWIITSFNQYQFTKEESQKVQQA
                     ILNGDLRITDLLNRPFSHYFWSFLTFKWGEILSGGKRLSKQEVLQIASCSSNGQEFAR
                     TPTQNRNRLIKGVPLVIGKVVTSMALCMVFCLGLLSTLGAPFGLSLGLAIILSLCNGI
                     VCLLSRGKAMLDSAGFQPQKQKTFKTLEENIKEKTIFDRGQKLFFGVVTLLACISAGI
                     SGYAGLVGLLTFLGAGMLISNPLVLILTIGLSVVAAVSFYSFQAIGIRENYTKFKNLF
                     IEDYQKPYGLLRCVLLGMVSTVFLAVYATLTWFTTVSGVNKLFNALGATPDTLLAHFI
                     AMICTSTTMVVNTFSQVYKVFNPKTYVDLKEKFESIYQPPEENLTRAQKIKHGAINML
                     KLFALIGDSLAYSVAGGIRSGIHIGETLGETIGAKFALTITMAILSPVILVFVSIAFT
                     WPTVFDRKKSTPCPSEMDKPLIEKMSHSHTSDVLQNNTLLPTSEKLSKPDDSNIRQAG
                     LRFFDVGLSEERTHKPNSNPTLESRAVLTSPSP"
BASE COUNT         1764 a         1151 c         1037 g         1688 t
ORIGIN      
        1 tgtaatcaac ggagctaaaa acaaatccat agttgataat gatgatgtat caatatttca
       61 gataggaatc agtgcatttt tttaccatta ggaacatgag gctcaacgga agccagacat
      121 atagcaccct tctcatctga aaaaccaagc aatagaaatt gagagaggaa cccggcaata
      181 tttttctccc ctaaattcac gcatccaata actatccgcc ctatcaatgc ttccggcgta
      241 taatgcactg ttatttgcgc agaggtttgg agaacgccaa tatcggcacc aaaatccacc
      301 caaactttat aggcaggttt cctggcacgc aggaatggtt ctgctttcac aacggtaccg
      361 gaacgcaaat cgactttttc aaattcttca taagatatcg tcatttttcc acctcaacgt
      421 tttgcataga ctgtaattga aagtataacc atgcccattc caattatttg ccctatcgtt
      481 aattgctcac caagaaatat ccaggcaata gtcactgttg ccaaaggcat tatagcggtc
      541 gataacgaag ccatgactcc atcaactgtc tggcaaccga aataccaaaa aacataaaaa
      601 aggccagaac ttaatcccag aataattaaa attagccaat ccaaagtatg gatagtgaaa
      661 ctgtcccatg tgctaaagct taagcaaaat aacaataaaa tcgcattaat cccattgagc
      721 aaggaagaaa ttaaaaatac aggtaatgaa ttaacgtgca ttttacttaa aatataatac
      781 atggcttcag gcagaagcga agttaaaaca agtgcgtcac ctaaaaaaga atggcttacg
      841 ttgatgtcgc ctagcttgtc gcatgcaatt acaactaatc caagagtagc aaaacccaca
      901 caaatggctt ttttgcctga tattttctcg ccaagaatta gccacgacat gatagcaata
      961 atcgcgggca aagcactcgt tataatgcca gctacgttag catccgtata ttgtaagccc
     1021 cataatataa ggaaattaaa aagtactccc gcagataatg cctgagcaaa aataaaaaac
     1081 caatctcttc gttttaactg taaaaaataa gaatacatgg gtaatttttt cgctggggtt
     1141 agccaatgta acagtaataa aatgacagca gccagtgtaa aacgaagtgc aagtatgtaa
     1201 agaacaggaa ttgacgaaag tacgtatttt gaaaatacaa tattaatgcc taccataatt
     1261 tgggcaaaga taagaaagag catgccctgg ataaaataag tattggattt tttcacatca
     1321 ataaccatct tggtcttatt taataatcga taccatcaaa tgaattcgta gtctatcaat
     1381 ttaaaaccag agcttattta tctatttcac gcattttctt tgctgttaac gctttggatc
     1441 tccattgaga aggggattca ccgaatactt tactaaaacg gcgactaaat gcgggcaagt
     1501 tttcataacc tacttcaaat gcgattgctt caatggaaca atttttctga gataataatt
     1561 ttttagcatg gagtaatttt ttcatccgcc aatattcggc aataccacag cctaacatct
     1621 gtttaaaacg gcgctgcaat tgactaatgc tcaaataaca atgtttcgct accctgttca
     1681 cattcacaga atctgcaaaa taaagatcaa tccattgttt tgctctgata acaaccagat
     1741 ccggttcggg tgaaaaagaa cttgccgcaa agtgaaacaa taattgattg attaaagagt
     1801 ctgtaaaaaa atctctttca ttatgtgcta aataatggtg ggtaaattgg atgagctttt
     1861 tagtactggc ggttaaattg agaatattag actcaaaagc ttcgtcacga agagagtttt
     1921 gagtagtagc atcaatcact aaaaacagat ttttttgact tccggcaaaa caatgttgtt
     1981 cattaggcgc aatgtatact ccgatatcat cattaacgac accggagtag tgacctacct
     2041 ctagctccat agaacctgag acgggcagta ccaattgcgc aaaatcgtga gtgtgactgc
     2101 aactttcagt atggtaagaa cgaagatcaa tacgattagt cagcaacata ttgctcccaa
     2161 gcaagcattt acctttaaaa gaaacagatt atatcatact taatttgagc cccattgaga
     2221 gaggtagtca ggaaattaga gagcgttatt tggatcagct tgagtttttt atcacacgga
     2281 taggtcagga ctaacaaagg ctttaaacgc ctgggtagag tttattgaaa ataggcaacg
     2341 ggatcgccca gggctagacc ctgttgtagt gagcatctca cagattcatt gaatcaatct
     2401 aaattttaat caactccctc tagtttgctt atcctcattt agcagagcaa tccttgagta
     2461 gtgccttggg tttcaaacgc atttcttgca ttaatgcctt acgaagaatg atgctattct
     2521 cttgggttgc accagaccaa aagccggtag cacaggtatt cgtattacaa tcaccgccaa
     2581 aagtaaaaaa agcttgagtg ttctcaatcg tacaaagaca caaagcacgt tttgaatttt
     2641 gtggatcaac cgtacatggc atgtctaggc aatttgtcca aggcaatcct tctgagcagt
     2701 tcatctttct tttaaatgca aattgctcaa atgaaaaagt tgaaacaagt gacgtcactt
     2761 tgtatctgtc tctaataggc tttctctctt tacatgtttt ataaccggca cttttacctt
     2821 tttctactat gcaatcacaa actgcgttgg ccggatttcc agacgtggga atacaacgag
     2881 cggaagtgca aagcgcatac tcctgatcac atataattgg cgttgcagag gcctgtacaa
     2941 accccgtatt gagaaataaa aaagcagcta ttaatccaat ccattttcca agcatcaagt
     3001 tcatttttca gatctcttta ttttttattt atagcagcat atttatacta ttatcgaatc
     3061 gtatgagctt taaataggtg actggacatt gtagactaac tctggtccca ctatgattaa
     3121 ttattgagca catgacaata actactataa cttctcctca agaaacgaga tacattgatc
     3181 tatcttcttg ttatttttat tactcttctc gcattcttgc tttcgttaca tggcttagtt
     3241 gcggcttatt cggaatttac atacttttct tttacgcaaa ctctctaata tccgactctg
     3301 cctctcgttg gaacaatgta ttacctaatc tttatatcaa atcgcacacc gcatcaactt
     3361 taggtattgc cattcacttt actgcaggcg gtattattct tgcaatggga tttttacagt
     3421 tactcagcac cattcgtcat tacgcacccg ggatacaccg ctggttaggg cgcatctatg
     3481 tcattgctgc tgctcttaca ggaataggcg gattgacttt catcgcttca accggaacta
     3541 tcggtgggct ggtaatggat attggttttg gtctttatgg attattaatg attttgtgtg
     3601 ccttacaggc ttaccgttat gctagacaat taaaattcga taaccatcag gcttgggcta
     3661 ttcgtttgtt tgcacttgcg atcggctcat ggctctacag gatggaatac ggcttctggt
     3721 ttctcatgac aaataaacta tggcataccc aaacatttca aggccctttt gattttgtga
     3781 tggcattctt cttctatctg cccaatttgt tgattgctga agcctattta cgaggccgct
     3841 cagcacaagt tagtcagttt tccaaactca ttgctggaac cgtgataaac ttggctagcg
     3901 gtttattagc agtagctacc tattttttcg ctaaacaata ttggttacca gcaatttggg
     3961 gacatagcat tagatagcaa gcttagcctg gttgctttaa aaacctcatc acttatggcg
     4021 agggggatgt caaaacagcc ctgctctcta aagtagggtt agaattgggc ttatgagtac
     4081 gctcttcgct caagcccaca tcaaaaaatc ttagcccagc ttgcctgata tttgaatcat
     4141 caggtttgga taatttttct gatgttggta atagagtatt attttgcagc acatctgaag
     4201 tatggctgtg actcattttc tctatcaatg gcttgtccat ctctgaagga catggagtcg
     4261 attttttcct atcaaaaacg gtgggccagg taaaagctat cgatacaaat actaaaatga
     4321 ccggagacaa tattgccatg gtaatggtta atgcaaattt tgcccctatt gtttctccca
     4381 gcgtttcacc aatatgaatc ccgcttcgga ttccaccagc aacagaataa gcaagagaat
     4441 cacctatcaa tgcaaacaat ttgagcatgt tgatagctcc gtgctttatc ttttgcgctc
     4501 ttgttaggtt ttcttccggt ggttggtata ttgattcaaa tttttctttt agatcgacat
     4561 acgttttcgg gttaaagact ttatatactt gtgaaaaagt attgacaacc atcgttgttg
     4621 aagtacatat catggcaata aagtgtgcta aaagggtatc aggagtcgca cctaaggcat
     4681 tgaaaagctt attaacccct gaaaccgttg taaaccaagt tagcgtcgca taaacagcca
     4741 aaaagaccgt acttaccatt cctaataaaa cacatcgcaa aagaccatag ggtttttggt
     4801 aatcttcaat aaaaagattt ttaaattttg tataattttc acgtatgccg atagcttgaa
     4861 acgaataaaa agagaccgct gcaaccacag acagcccaat tgtaagtatc aaaaccagag
     4921 ggttagagat tagcatgccc gcccccaaaa acgtgagaag tcctacgaga ccagcatatc
     4981 cagagatgcc cgcagaaatg cacgctaaca aggtcactac accaaaaaat aatttctggc
     5041 ctctatcgaa tatcgttttt tcttttatat tttcttcaag ggtcttaaac gttttttgtt
     5101 tttgaggctg aaagccggca ctatcaagca tggcttttcc gcggcttaat aagcaaacta
     5161 ttccattaca taaggaaagt attatcgcca aaccgaggct aaggccaaaa ggcgctccta
     5221 aagtacttaa taatcccagg caaaatacca tacacagcgc catggaggta acgactttgc
     5281 caatgaccaa tggcactcct tttatcagcc tgtttctatt ttgagtcggt gttctcgcaa
     5341 attcctggcc attgctagag cagctagcaa tctgtaagac ttcctgctta gataatcttt
     5401 ttccacctga aagtatctct ccccacttaa aggtaaggaa actccaaaaa tagtgagaaa
     5461 aaggacgatt aagaagatct gttatgcgaa gatccccgtt tagaatggct tgttgaactt
     5521 tttgcgattc ttctttagta aattgatatt ggttgaaaga ggtaataatc caatcttttt
     5581 gagtacgaaa ttttcttctt aaaaccatta tcacttcggg acgtttatga ttagcaaagt
//
LOCUS       DACVWI010000182         5529 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.182, whole genome shotgun sequence.
ACCESSION   DACVWI010000182 DACVWI010000000
VERSION     DACVWI010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5529
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.182"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..394
                     /locus_tag="JBH85_12325"
     CDS             <1..394
                     /locus_tag="JBH85_12325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946987.1"
                     /translation="IKKNAIRKALIKAFIHCDLVKDQSQKNKYQLIDKLNQTLAVSVG
                     AELKESILTNLSELFQILEALNTKLDEFTDRTNHLSQQAKSFRTQFYEVILRIIELIK
                     LLPEYKIDPAQDAINREPLYFDRTIGER"
     gene            478..954
                     /locus_tag="JBH85_12330"
     CDS             478..954
                     /locus_tag="JBH85_12330"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HAU0946988.1"
                     /translation="MNSCIIMHFKLISLECMMAKELTLSIIKPDAVAKSVIGEIYTRF
                     EKAGLDIVAAKMTQLSREQAESFYDIHRARPFFKDLVDFMISGPVMIQVLKGENAVAK
                     NREIMGATNPKEAAPGTIRADFADSIDANAVHGSDSLENAAREIAFFFEQHELCNR"
     gene            963..2123
                     /locus_tag="JBH85_12335"
     CDS             963..2123
                     /locus_tag="JBH85_12335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HAU0946989.1"
                     /translation="MGAVMDQQKVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQV
                     GIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKLECGNCIETVFI
                     PEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD
                     KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREV
                     SPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGV
                     NDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTIT
                     RKTRGDDIDAACGQLAGEVKDKTSRSQRWQKLHFMSKTDKSTELTISSEEIA"
     gene            2303..3085
                     /gene="pilW"
                     /locus_tag="JBH85_12340"
     CDS             2303..3085
                     /gene="pilW"
                     /locus_tag="JBH85_12340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HAU0946990.1"
                     /translation="MLKSIRYLLTIIICLFVGACQHTQDNEEPNSIRKVNLSKAASFN
                     VQLGLGYLKQGDRPRAKKKLLTALEQQPDSADVNAALAYYFEQTKELEQAKKFYHKAI
                     TLSQNGGAQLNNYGAFLCRQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPD
                     HDKAILYFTKALNQDPSRKESLYELVKLQSKIGHDKEALELLQKHADLVLNDKVMLAL
                     AKDIANRTGQYTLAAEYENSFNKLEQTNNISGVNDEYNSSNG"
     gene            3060..3629
                     /locus_tag="JBH85_12345"
     CDS             3060..3629
                     /locus_tag="JBH85_12345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0946991.1"
                     /translation="MNTIAAMDETRNNEFTNPGYELAALRQQKGYSIEYVASKLHLRA
                     RIIELIEAGDFDLLPQPVFVKGYLRAYSKLLGVSPEPFLTLFNAQYCFEKKPERAALW
                     QSKKESHKAEHFIKWFTILFAIGVLVAVGIWWQKNKDSQSIDTPKENSSGLSISETSS
                     EIKLTDLSKMESLLTPNNTQMTPLEKNGG"
     gene            3619..4899
                     /gene="hisS"
                     /locus_tag="JBH85_12350"
     CDS             3619..4899
                     /gene="hisS"
                     /locus_tag="JBH85_12350"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HAU0946992.1"
                     /translation="MVVDKIQAIRGMNDVLPDSTSIWRFIEQTFINCLVRYGYKEIRF
                     PIVENTQLFKRTIGEITDIVEKEMYTFNDLNGDSITLRPEGTAGCVRACIEHGLLHNQ
                     QQKLWYLGPMFRHERPQKGRYRQFNQFGVEALGITGTGIELELISICRRLWIDLGFSQ
                     SVQLQVNSLGEINERQKYRSILVEYLRDHFQILDEDSKRRLDKNPLRVLDSKNPDLQQ
                     LIQNAPKLIDVLGDDSREHFQSFCNGLETLGIPYSINPVLVRGLDYYGQTVFEWVTDQ
                     LGSQATICAGGRYDMLVEFLGGAPTPAVGFALGLERIFLLMETLNLLNESNNKQSIFI
                     IATNEEAILKALVMAESIRNAHPSLDVITNTAGGGFKSQFKKADKSGARLALILGEDE
                     IAKEYVSIKDLRTEIEQISIPMTKINEFLQDYLA"
     gene            4917..>5529
                     /locus_tag="JBH85_12355"
     CDS             4917..>5529
                     /locus_tag="JBH85_12355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HAU0946993.1"
                     /translation="MSVYMTEEEQLEIIKKWWKRYGNMITIFLSIMLLIIAGYRYMNW
                     HNDKIKQQASIAYENMMIAFSNQNIKSVRSYANELIKNYNHTVYADIAHMTLAKIYVN
                     KNKLEQARNELKAVASESQMTPLRQIAKIRIARLLAADKAYTNALNELSAVEDEAYLP
                     VINELKGDIYSAKGQYQDAMNAYRLAIDEVRTNGMGNLFLEMKT"
BASE COUNT         1935 a          940 c         1088 g         1566 t
ORIGIN      
        1 aattaaaaaa aatgcaatta gaaaagcgtt aatcaaggcc tttattcatt gtgatctggt
       61 caaggatcaa tcacaaaaaa acaagtacca gctaattgat aaattgaatc aaacattagc
      121 tgtttctgta ggtgctgaat taaaagagtc tatcctgacc aatctgagtg aactcttcca
      181 aattctagaa gctttgaata caaagcttga tgaatttact gataggacta atcatctaag
      241 ccaacaggct aaatcattca gaacccaatt ctatgaggta atacttcgca tcattgagtt
      301 aattaaacta ttacccgaat ataaaattga ccctgcacaa gatgcgatta accgagaacc
      361 attatacttt gatagaacga ttggagagcg ctaacgcaaa accctatttt ctctaaaatc
      421 atactataac tattgactga atggttgaat gcatgaattt ttattagcca gaccactatg
      481 aattcatgta taataatgca ctttaaatta atctcattgg agtgcatgat ggcaaaagaa
      541 ttaacattat ctattattaa acctgatgct gtagcaaagt ctgtgatagg tgaaatatat
      601 acccgctttg aaaaagcagg cttggatatt gttgccgcta aaatgacaca actttcacgc
      661 gaacaagccg agagctttta tgatattcat cgcgcgcgac cattctttaa ggatctggtg
      721 gattttatga tttctggtcc tgtaatgatc caagtattaa aaggtgaaaa tgctgtcgct
      781 aaaaacagag aaattatggg cgcgacaaat cccaaagaag cagcacctgg aactatacgt
      841 gctgattttg ctgatagtat tgatgcaaat gctgtgcatg gttctgacag ccttgaaaat
      901 gctgctcgtg aaatagcatt tttctttgaa cagcatgagt tgtgcaatag ataaaggcag
      961 gcttgggagc ggtaatggac caacaaaaag tgaatctatt aaattataat tactcacagc
     1021 tacgagaatt attgatagcg tgggatgaaa aacctttcag agctcaacag ctatttcaat
     1081 ggattcatca agttggcata cgtgactttg ctcagatgac taatttaggg aaagttttaa
     1141 gaaataaact ttcccaatta gcttgtatag atttacctga aatcgttgca tgtcaaaaat
     1201 cagctgatgg cacacataag tggctattaa agctggaatg tgggaattgt attgaaacag
     1261 tgttcattcc ggaagcaaat cgagggacac tttgtgtttc atcacaagta ggttgtgctt
     1321 taaattgttc tttttgctcc acagcaaagc aaggatttaa cagaaattta tcaacagctg
     1381 aaataattgg tcaagtatgg ctggcagcac gcgaactatc agataataat ggcactcacg
     1441 ataaaaaaat aactaacgtc gtgatgatgg gaatgggtga accgttactt aatttcgata
     1501 atgttgtttc tgctatgaac atcatgatgg atgatttagc ctatggacta tccaaaagac
     1561 gggttacatt aagcacttcg ggtgttttac cggaaatgga acgactcaga gaagtcagtc
     1621 ctgtcgcgtt ggcagtatcc ttacatgcac caacagatga actacgtaac gagctggtac
     1681 caattaataa aaaatatcct ctctctcaat taatatccct atgtaaacga tattttaaag
     1741 acgaaccaag aagaaaagtt acttttgaat acgtcatgct aaaaggagtt aatgatcaac
     1801 ctgaacatgc tagtcaatta attaaacttt tgcataatgt gcctgcaaaa gttaatttaa
     1861 ttccttttaa cccatttcct ttaactcaat atcagagatc atcccgggaa acaattgatg
     1921 cctttcgaga taaattaatg aaacatggta ttaatactat tactcgcaaa actcgtggag
     1981 atgatattga tgcagcatgc ggccaacttg ctggcgaggt aaaagataaa acgagcagat
     2041 cacaacgatg gcaaaaactt catttcatga gcaaaacaga caaatcaact gaattgacca
     2101 tttcttcgga agaaattgca taacacagtc ttgtataata accgagagcc aattaagaac
     2161 tttctccagt cttcctggtt ggagattatg tataataaag gtgttttcac ctgcagactc
     2221 acattaaata gtgacaaatc atttttaatt tggacttaag tggttataat gcgaaatcat
     2281 ttctaacgta aagtgattaa tcgtgctaaa aagcataagg tacttattaa ctataataat
     2341 ttgtttattt gttggagctt gtcagcatac acaagataac gaagagccta atagcattag
     2401 aaaagtaaac cttagcaaag cggcttcttt taatgtgcaa ttagggttgg gatatttgaa
     2461 gcaaggcgac aggcctagag caaaaaagaa gctgttaacc gccttggaac aacaacccga
     2521 ttcagcggat gttaatgcag cattagccta ttattttgaa caaaccaaag aattggaaca
     2581 agcgaaaaaa ttctatcata aagcaataac cctatcgcaa aatggtggtg cacaattgaa
     2641 taattacggc gcttttctgt gtcgacaggg ggattataaa aatgctgaaa cttacttcct
     2701 gaaggccgtt aaagatcaaa actatgtgca tacctcaggc gcttatgaaa atgctggatt
     2761 atgtgctatg gctatacctg atcatgataa agccatttta tattttacga aggccttaaa
     2821 tcaggatcca tccagaaaag aatcactata tgaattagta aaattacaaa gtaaaatagg
     2881 acatgataaa gaagccctcg aactgcttca aaaacatgct gatttagtat taaatgataa
     2941 ggtaatgctt gcattagcga aagacatagc aaatagaaca ggccaatata ctcttgcagc
     3001 agaatatgaa aatagcttca ataaactgga gcaaactaat aatattagtg gagtaaacga
     3061 tgaatacaat agcagcaatg gatgagacaa gaaataatga atttaccaat cccggctacg
     3121 agctggcggc tcttcgccag caaaaagggt attcaatcga gtatgttgcg agcaaacttc
     3181 atctacgagc tcgtattata gagctcattg aagcaggaga ttttgattta ttgcctcagc
     3241 cagtttttgt aaaagggtac ttgcgcgcct attcaaaatt attaggagtt tcacctgaac
     3301 cttttttaac cctttttaat gcacaatatt gttttgaaaa aaaaccggaa agagcagccc
     3361 tatggcaaag taaaaaggag tctcataaag cagaacattt tataaaatgg ttcaccattt
     3421 tatttgcgat tggagtttta gtcgcagttg ggatatggtg gcaaaaaaac aaggatagcc
     3481 agtctataga taccccaaaa gagaattcat ctggattatc aatcagtgaa accagttcgg
     3541 aaattaaatt gactgattta tcaaaaatgg aatcgttatt aacgcccaac aatacacaaa
     3601 tgacaccttt ggagaaaaat ggtggttgat aaaattcaag ctatccgagg aatgaatgat
     3661 gtactgcctg atagtacctc gatatggcgc tttatagaac agacttttat aaattgcctc
     3721 gtacgatatg gatacaagga aatacgtttt ccaattgttg agaatacaca gctatttaaa
     3781 cgtacaattg gtgaaataac agatattgtt gaaaaagaaa tgtacacttt taacgatttg
     3841 aatggtgata gcataaccct aaggccagaa ggcacagccg gctgtgttcg tgcctgtata
     3901 gaacatggtt tattacataa tcaacaacaa aaattatggt acttaggccc tatgtttcgt
     3961 catgaacgtc ctcagaaggg tagataccgt caatttaacc aatttggggt tgaggcgcta
     4021 ggaattactg gcactggcat tgagcttgag ctgatctcaa tttgccgcag attatggatc
     4081 gacctgggtt tttctcagtc agttcaatta caagttaatt cattaggtga aataaatgaa
     4141 cgtcagaaat atcgctctat cctggtagag tatctacgcg atcattttca gatacttgat
     4201 gaagacagta agaggcgatt ggataaaaac cctttgagag ttcttgatag taaaaaccct
     4261 gatcttcaac agctcattca aaatgcccct aagttaattg atgttcttgg tgatgatagc
     4321 agagaacact ttcaatcgtt ctgcaacgga ttggaaacac ttggtattcc ttattccatc
     4381 aaccctgtat tggtaagagg attagattat tatggccaaa cggtgtttga atgggtaaca
     4441 gaccaattag gaagtcaagc tacaatatgt gcaggaggta gatatgatat gttggtggag
     4501 ttccttggcg gagcacccac acctgcagtt gggtttgctt taggattgga aagaatattt
     4561 cttttaatgg aaactttaaa cttgttgaat gaaagtaaca ataaacaatc aatatttatc
     4621 attgctacta atgaagaggc catattgaaa gcgcttgtca tggcagagtc aattcgaaat
     4681 gctcatccat ctcttgatgt cattaccaat acggcaggcg gtggttttaa aagccaattt
     4741 aaaaaggccg ataaaagcgg ggctcgcttg gctttgattc ttggggaaga cgaaatagcc
     4801 aaggaatatg taagcattaa agatttgaga actgaaatag aacaaatatc aataccgatg
     4861 accaaaataa atgaattttt gcaagattat ctagcttaag ggcaggagaa tattatatgt
     4921 ctgtttacat gacggaagaa gaacaattag agattataaa aaaatggtgg aaacgatatg
     4981 gcaatatgat aactattttt ttatcaataa tgctcctgat tatcgcaggg taccgatata
     5041 tgaattggca caatgacaag ataaaacaac aagcatctat tgcctacgaa aatatgatga
     5101 ttgcattttc caatcaaaac ataaagtctg ttcgttccta tgccaatgaa ttaattaaga
     5161 attataacca tactgtttat gctgatatag ctcatatgac acttgcaaaa atctacgtaa
     5221 ataaaaataa gcttgagcaa gcaagaaatg agttaaaggc tgttgcatcg gaaagccaaa
     5281 tgacaccgct aagacaaatt gccaaaatcc gcattgcacg tttactggcg gcagataaag
     5341 cttataccaa tgcattaaat gaattaagtg ctgttgagga cgaagcctac ttgccagtaa
     5401 ttaacgaact gaaaggggat atttatagcg ccaaaggcca atatcaggac gcaatgaatg
     5461 cctaccggct tgcaatagac gaagtaagaa caaatggaat gggtaattta tttttagaaa
     5521 tgaaaacaa
//
LOCUS       DACVWI010000183         5382 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.183, whole genome shotgun sequence.
ACCESSION   DACVWI010000183 DACVWI010000000
VERSION     DACVWI010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5382
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.183"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            85..1419
                     /locus_tag="JBH85_12360"
     CDS             85..1419
                     /locus_tag="JBH85_12360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946994.1"
                     /translation="MTPIISHLLKIFPELNTQVKTDSLNWTFNTHLKQLGPDFYSKVA
                     RLHPILNMEYSVLCQHLRYNLSSPDYSSPEQIKEQLIDALKLAELLEYTYQHYLVVPR
                     EVVRLRRHKAIYKELLTELSGYSFALDNPEPESLKTSLSLTQAIREKTAQSNWYRIFI
                     SRSKRVINLLDNLDTGSKAFRDFVVLLDKYTNPFLAYLGWCFFAPRLFTNLFLILKHT
                     IPGEWMGEKEKSLDWSDRFYAHLQRRWFELANDSVWFTVGILNCFVLVGALAPLSVYL
                     SLFAFVFDVANTSLRAYIEIGRLQQLQKEYGELFDQEENEDQKKIIKEYQDLISYRIK
                     FEILRSFLSVGGAVAVVIAMALSVPALGIINPIIPLIGAVLLLALWGVSLYLNNKLDE
                     YRPVDNIEKPAPSVINKLSFFAPKNEKKESLHLSSKPEKVLEAEELIPAFTF"
     gene            1473..3533
                     /locus_tag="JBH85_12365"
     CDS             1473..3533
                     /locus_tag="JBH85_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HAU0946995.1"
                     /translation="MNVMLSKNYMMEKYNMSTTVGLPQFSHIKIEHFKSHLDALLKNH
                     LEEIDRLLKENHHYTWDNLIYPLDSLADELERFWSPFAHMHAVMDSETIRESYEACLP
                     LLSAYDAAIGHNQDLYEAIKSIDQHSLNPAQKKIIADSIQDFELSGVALSKANKKRFE
                     AIQSRLAELSSKFENNVLDATHAYTIHITEAERMAGLPEHALNTAKELAHEKGLDGFV
                     LTLEYPCFQAVITHAEDRALREEMYRAYITRASDQGPNAGTFDNTPLIDEILSLRHEK
                     AELLGFNNFAELSLATKMAASTNQVTEFIYDLISRTRDKGKAEFRQLEVFAQDKWNLS
                     PVNPWDVAYLSEKRRQDLYSLSQEELRPYFPQPKVMQGLFAIVKKLFGMSIEEIEGVD
                     VWHKDVQCYCIVDESNQTRGYIYTDLFARPHKRNGAWMDSMQSRRKLEDGTVQLPIAT
                     LTCNFAKPSANRPAMLSHDEVVTLFHEFGHCLHHVLTQVDYLGGSGINGVEWDAVELP
                     SQFFENWCWDEHALSLLTSHADTGETLPSALYERLIAAKNFQSAMAMLRQMEFALFDF
                     RIHQEYQTGKASFVPNILADVRSKTSVVPIVPYNRFQHSFSHIFGGGYAAGYYSYMWA
                     EVLSSDAFARFEEEGIFNPKTGHDFLKSILEVGGSRKAADAFVEFRGRPATIDALLRH
                     NGIL"
     gene            3684..4089
                     /gene="ssrA"
                     /locus_tag="JBH85_12370"
     tmRNA           3684..4089
                     /gene="ssrA"
                     /locus_tag="JBH85_12370"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            4171..>5382
                     /locus_tag="JBH85_12375"
     CDS             4171..>5382
                     /locus_tag="JBH85_12375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISLpn3 family transposase"
                     /protein_id="HAU0946996.1"
                     /translation="MIKSPLFEVCMDLAVEDTTAWSEAIFGSVALGDKRLTRRLIQIG
                     KQLSSTPGGSLSGSCGGQDALIEGSYRFLRNKRVTANQIAEGGYQVTSWLSQSIPTLL
                     AIEDTTTLSYTHQVKESLGDLGGPKEKSNRGFHVHTTMLMDAEQEKTIGLIAQERWCR
                     DIKERGKKNHRRVRLYTEKESYKWEKNTRELENRLGSKMSDVISVCDREADIFEYIQY
                     KLDHAQRFIVRASHNRKLEGSNCYLFQMLPSAVNLGIYTIEVAQKANRKKRQVTLELK
                     TTSVTFSPSERRAKARELKPITLNVVIAKEKNPSESDCLEWILLTTEATTTLECTRKI
                     TRYYEMRWRIEDFHKAWKSGVGAEEQRMQSIENLEKMIVILSFVAIRLLQLKEYFEYP
                     TTLVINDSSTSC"
BASE COUNT         1594 a         1077 c         1173 g         1538 t
ORIGIN      
        1 cccagataag gtgacaggag caaaaatttt tgcaaagctg gattagaaac acaatgatat
       61 gcggattatt tatttcaaac aatcatgaca ccgattatta gtcatttatt aaaaatattt
      121 ccagagctga acacgcaagt taaaactgat tctttgaatt ggacttttaa cacgcaccta
      181 aagcaattgg gccctgattt ttattcgaaa gtagctcgtc ttcatcccat tctcaatatg
      241 gaatacagcg tattgtgtca gcacttaagg tataacctgt catcgcctga ttacagttct
      301 ccggagcaaa tcaaagaaca actgattgat gcactcaaac tggctgaact tttggaatat
      361 acctatcaac actatctggt cgttccgcgc gaagtagtgc gtttacgtcg ccataaagcc
      421 atatacaagg aattattgac ggaattgtcc gggtattctt ttgctttgga taatcctgag
      481 cctgaatctc tcaagacaag cttatcgttg acgcaggcca ttcgtgagaa gactgctcaa
      541 tccaattggt atagaatttt tatcagcaga agtaaacgag tcattaatct tttggataat
      601 ttagacactg gttcaaaagc atttcgtgat tttgtcgtgc tgcttgataa atacactaat
      661 ccatttttgg cttatttggg ctggtgtttt tttgccccca gattatttac caatctcttt
      721 ttaattttaa agcacaccat tccaggggaa tggatgggcg aaaaagaaaa atcactggat
      781 tggtccgatc gattttatgc ccacctgcaa cgacggtggt ttgagttggc caatgacagc
      841 gtttggttta cagtcgggat tctcaattgc ttcgtgctgg taggcgcttt ggcaccccta
      901 tctgtttatt tgtctttgtt tgcgtttgtc tttgacgtcg ccaacacaag cctgcgtgct
      961 tacatagaga ttggtcgatt acagcagttg caaaaggaat atggcgaact cttcgaccag
     1021 gaagaaaatg aagaccagaa aaagataatt aaagagtatc aagacttgat aagttatcgc
     1081 attaagtttg agattttgcg ctccttttta tcggttggcg gggcagtcgc tgttgtgatt
     1141 gcaatggctt tatcagttcc tgctttgggt attataaacc caatcatccc cttgattggg
     1201 gcagtgcttt tgctagcgct atggggcgtt tcattatact tgaacaacaa gttagatgaa
     1261 tacagacctg tcgataacat tgaaaaacct gctccttccg ttatcaataa attaagcttt
     1321 tttgctccca aaaatgaaaa aaaagagagt ctgcacctgt cttccaagcc agaaaaggtg
     1381 cttgaggcag aggaattaat tccagcgttc accttttaat tcattactgt actttgccat
     1441 ttcaccgctg gtaagtatag agactaattc aattgaatgt tatgctttca aaaaattaca
     1501 tgatggaaaa gtataacatg tcgaccacag ttggattgcc gcaatttagc catataaaaa
     1561 ttgaacattt caaatctcat cttgatgctt tattaaaaaa ccatcttgag gaaattgaca
     1621 ggctgcttaa ggaaaatcac cactatacct gggataattt aatttaccct ttagatagcc
     1681 tcgccgatga actggagcgt ttttggtctc cttttgcaca tatgcatgcg gtgatggatt
     1741 ctgagacaat acgtgaatct tatgaggcgt gtttgccatt gctgtctgcc tatgatgctg
     1801 cgattgggca taatcaagac ttgtatgagg cgattaaatc gatagatcag cattccctta
     1861 accctgccca gaaaaaaatc attgcagaca gcatacagga tttcgagtta tcgggagttg
     1921 ctttatccaa ggcgaataaa aagcgctttg aagccattca atcgagactg gccgaattat
     1981 ccagcaaatt cgaaaacaat gtgctggacg caactcatgc ctacactatt catatcaccg
     2041 aagcagaacg tatggcggga ttacctgagc atgcattaaa tacggcaaaa gagttggcgc
     2101 atgagaaagg gctcgatggt tttgttttaa cccttgaata cccttgtttt caggccgtta
     2161 ttactcatgc cgaagacagg gctttacgtg aagaaatgta tcgagcttac atcaccagag
     2221 cttcagatca aggccctaat gcaggaacat ttgataatac tccgctgatt gatgaaattc
     2281 tgtccctgcg ccatgaaaaa gccgagcttt tagggtttaa taattttgcc gagttatccc
     2341 tggctaccaa gatggctgcc tcgaccaatc aagtcactga atttatctat gatttaatca
     2401 gcagaactcg tgacaagggt aaggctgaat ttaggcaact tgaagtgttt gcacaggata
     2461 aatggaatct gagcccggta aacccatggg acgttgctta tctttctgaa aaaagaagac
     2521 aggatttgta ttccttatct caagaggaat tacggcctta tttcccacag cctaaagtga
     2581 tgcaaggctt gttcgcgatt gttaaaaagc tctttggtat gagtatcgag gagattgagg
     2641 gcgtggatgt ttggcataag gatgttcaat gctattgcat agtcgatgaa tccaatcaaa
     2701 cgcgcgggta catttatacg gatttgtttg ccagaccgca caagcggaat ggtgcctgga
     2761 tggactcaat gcaaagccgc agaaaactgg aggatggcac agttcaatta cccattgcga
     2821 ccttaacttg caattttgcc aagccttctg caaacagacc cgccatgtta tcgcacgatg
     2881 aagtggtgac tttgtttcac gagtttggtc attgcctgca tcacgttttg actcaagtcg
     2941 attaccttgg cggctcagga attaatggcg tggaatggga tgcggtggaa ttacccagcc
     3001 aatttttcga aaactggtgc tgggatgagc acgcattgtc tttactgact tcgcacgcgg
     3061 atacagggga aaccttgcct tccgcattgt acgagcgctt gattgctgct aaaaattttc
     3121 aatccgccat ggccatgtta agacaaatgg aattcgcctt gtttgatttt cgcattcacc
     3181 aggaatatca aacgggtaaa gcgtcatttg tcccaaatat tctggcggat gtacgttcta
     3241 aaaccagtgt tgtacccatt gttccttata atcgctttca gcacagcttc tcgcatattt
     3301 ttgggggtgg ctacgccgct ggttattaca gttacatgtg ggcagaagta ttatccagcg
     3361 atgcctttgc gcgctttgag gaggaaggta ttttcaaccc caaaactgga catgactttt
     3421 taaaatccat tctggaggta ggcggctcaa gaaaagcagc cgatgctttt gttgaattca
     3481 gaggaagacc cgcgacgatt gatgccttgc tgcgccataa cgggatttta taaaaacagg
     3541 acttgcgccc cccaatcctc tcggtaaaac attttttgcc ttgaccttgg ggttttccgt
     3601 aagtcctgaa aatatattcg gtatgctggc gggattttgc ttacatgccg gcattttatg
     3661 ttataattaa agtgtacaga atggggggcg acctggcttc gacgtgggtt gcaaaaccgg
     3721 aagtgcatgc cgagaaggag atctctcgta aataagactc aattaaatat aaatgcaaac
     3781 gatgaaaact ttgctggtgg ggaagctatc gctgcctaat aagcacttta gttaaaccat
     3841 cactgtgtac tggccaataa acccagtatc ccgttcgacc gagcccgctt atcggtatcg
     3901 aatcaacggt cataagagat aagctagcgt cctaatctat cccgggttat ggcgcgaaac
     3961 tcagggaatc gctgtgtatc atcctgcccg tcggaggagc cacagttaaa ttcaaaagac
     4021 aaggctatgc atgtagagct aaaggcagag gacttgcgga cgcgggttcg attcccgccg
     4081 cctccaccaa ttcattatcc gatacagtcc aataccgggt ctttcccaaa tacctgaatc
     4141 ttctacacat cttgtttatt ccaaacaaac atgatcaaat cacctctttt tgaggtatgt
     4201 atggacttag cagttgaaga tactacagca tggtcggaag ctatttttgg ttcagttgct
     4261 ttaggggata aacgacttac tcgtcggtta attcaaatag gcaaacaatt atcatcgacg
     4321 cctggtggtt ctctttcagg aagttgtgga gggcaggatg cgcttataga aggtagttat
     4381 cgttttttac gaaacaaacg agtcacagcg aatcaaattg cagagggtgg ttatcaagta
     4441 acaagctggt tatctcagtc aatccccacg cttttagcca ttgaagacac aaccacgctc
     4501 tcctataccc atcaagtaaa agaatcatta ggtgatttag gcggtcctaa agaaaaaagc
     4561 aatcgaggtt ttcatgttca caccaccatg ctcatggatg cagaacaaga gaaaacaata
     4621 ggattaatcg cgcaagaacg ttggtgtcga gatatcaaag aaagaggcaa aaaaaatcat
     4681 cgacgagtaa ggttatatac agagaaagaa agctataaat gggaaaagaa tactcgggaa
     4741 ttagagaatc gattgggttc taaaatgtct gatgtgattt ctgtttgcga tagagaagct
     4801 gatatttttg aatacattca gtacaagtta gaccatgctc aacgttttat tgttcgagcg
     4861 agccataatc gaaaactaga aggaagtaac tgttatttat ttcaaatgtt accttcagca
     4921 gtaaacttgg gtatttatac aattgaagtg gctcaaaaag caaatagaaa gaaacgccaa
     4981 gtgactcttg agttaaaaac aacatctgtt actttctcac cttctgaacg aagagctaaa
     5041 gcacgtgaat taaaaccaat cactttaaac gtagtaatcg ctaaagagaa aaatccatct
     5101 gaaagcgatt gccttgaatg gattctatta acaacagaag ccacaacaac attagagtgt
     5161 acccgaaaaa taacgcgata ttatgaaatg agatggcgca ttgaggattt tcataaagca
     5221 tggaaatcgg gggttggtgc tgaagagcag cgtatgcaat caattgaaaa tttagagaaa
     5281 atgattgtca ttctctcatt tgtagcaatt cgattactcc aattaaaaga gtattttgaa
     5341 tacccgacta ctctagttat caatgatagc agtacttctt gc
//
LOCUS       DACVWI010000184         5377 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.184, whole genome shotgun sequence.
ACCESSION   DACVWI010000184 DACVWI010000000
VERSION     DACVWI010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5377
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.184"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            315..1595
                     /locus_tag="JBH85_12380"
     CDS             315..1595
                     /locus_tag="JBH85_12380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0946997.1"
                     /translation="MNTLSFKHPLLAKTYLWIIWTIAACFFFYKYLIQVSPSVMTADL
                     MKAFQVNAAGLGNLSAFYFYSYLFMQIPVGVMLDRYSPRLLTTLAIFVCSISTYIFSQ
                     TNTLWLACLSRALMGAGAAFAAVSCFKLAAVWFSPKRFALVSGMFMTAAMLGAVGGQM
                     PLAFLVQHEGWRKALELVSVMGIILGVVYFLILRDKPAQTQPMPNSKEPVIQLLRRII
                     VNKQAWALSLYSGLAFAPVSVFGGLWGVPFLEKAYLLSRTDAALAISFIFVGFAAGAP
                     FWGWFSDFIRRRKPVLFTGTCSALLCLLVVIYSSNQNLLTLIILLFLFGFGASGFFTS
                     FAMIRELFPLVLVATVLGIMNTFNSVFEALFEPLVGALLDWTWEGTMVDGIHQFTLHG
                     YYFSLLLLPLSLILALLTLLLIDETYCRTKEEVE"
     gene            complement(1605..1988)
                     /locus_tag="JBH85_12385"
     CDS             complement(1605..1988)
                     /locus_tag="JBH85_12385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946998.1"
                     /translation="MGFSAFLQAKTYIPQCPKEINTLERIQTSPDGWETLSGIKNNYL
                     GNVSFYSGHPKGQASLKPNRINKKKAEWKFSPHDTIYIVCHYNQTGIELTQQLPQKTK
                     GCTVIFNPNAKGPYGFLPQKITCNQ"
     gene            complement(2078..2380)
                     /locus_tag="JBH85_12390"
     CDS             complement(2078..2380)
                     /locus_tag="JBH85_12390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0946999.1"
                     /translation="MLNERDLEVEVKMESMIDLVGYVASSLVFATFYVKKILTLRLIA
                     VCSNVAFITYGLGYHLHPIFILHSVLLPLNLYRIFELLKNDPELTILARINLKATR"
     gene            2456..4177
                     /gene="legLC8"
                     /locus_tag="JBH85_12395"
     CDS             2456..4177
                     /gene="legLC8"
                     /locus_tag="JBH85_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegLC8"
                     /protein_id="HAU0947000.1"
                     /translation="MIFELNILPNRNFLFIFGDNMPLTSLKKFLKDIGKENIKQHQVK
                     LVLKTSQDIQLFLNALRDSRNHGISSLSELDLSDTRFTNQELSDLVTALNNIPGIKSL
                     RLDSCGLKDSDTVELSKLTHIKKLSLKSNYLKNRPMFNSMLEALYLDYNTELSASYVL
                     FSLSRNAAALKKLSLRNCGVTDANLEYLTRPESRLKSLTHFNLRRNNITHQGVDSFAH
                     LQSLTTIDLSQNTGIGDEGVSRLAPLKQLRTLYLDNCGIGGEGIKAIAKMNLQTVDLS
                     FNPGLKKEWGLDDIRPNHTIRTLLLTFCSLNDNHAKLIVSKFPAATDLNVANNNMTRA
                     GVKTLLSNPIIENLDVSTQSLYAKSTGASGTGMISPRIMMKKKEIKQQEKEKAQDLLD
                     TICNTITLKSINLEHTGITSRMLLSLIPDETDHKRYLKKINGVSCKELKPKLEQQIAL
                     RKAEKQSSPPVINAVEDSKTSDLMVKSGSSSKTEMQTREDDLIASPDEKIKALELENQ
                     KLKDELATARKRIFELENQSLSGSKTRKKTSIPPLAIPVMFQDFAKPGKNETDDNTIN
                     SITAIPK"
     gene            complement(4241..5206)
                     /locus_tag="JBH85_12400"
     CDS             complement(4241..5206)
                     /locus_tag="JBH85_12400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0947001.1"
                     /translation="MDLSKRIEPKTWSFVEKIQNAGGKPIYDIPVTEGRAIFDQLQAL
                     PTEKPDVDVEDKTLPVGPGGKVDIRIVRPKGAKEALPVIMFFHGAGWVFGDYQTHGRL
                     VREIAVGTHAAVVFVKYTLAPEAQYPTQIEESYAAMKYIAEHGKQFNLDTSRFVAAGD
                     SVGGNMTSVMTLLAKERGGPKIDYQVLIYPVTDANFDNASYKEFAEGPWLTKKAMEWF
                     WDKYLPNKEKRKEITASPLQASLEQLKGLPPALVITGECDVLRDEGEAYAHKLNAAGV
                     TVTAVRHLGTIHDFLMLNDLSETPACRNAVETIIGHLTHIFGKKK"
BASE COUNT         1578 a          960 c         1072 g         1767 t
ORIGIN      
        1 cacattgcct aaaaagttaa cattaaacat tcttttaatt tccagttttt tatgaatata
       61 agacgacaat taataagcag aaagtcttgc tcccaaagct gcaacagaca gcctgttgga
      121 ttgtcgcctg ttgttttaaa ctctctcatc tcaattgtcg tcgtggtggt ggtcagcttt
      181 accctttctt ctgctctgag acggcttctc tcctgactta tctgccccgc ctcagggcga
      241 taacagcagc agataagacc tggcggtttt tgaaatttta tctctaacct gaagcaaata
      301 agttaggagt tattgtgaac acattgtcat tcaagcatcc attgctggct aaaacttatc
      361 tttggattat ctggaccatc gcggcatgtt ttttctttta taaatatttg attcaggttt
      421 ctcccagtgt catgacagct gacttgatga aggcatttca ggttaatgct gctggccttg
      481 ggaatttgtc agctttttat ttttattcct atttatttat gcagattcct gtgggcgtta
      541 tgttagacag gtacagccca agattgctaa caactcttgc tatttttgtc tgcagtatca
      601 gtacttatat tttttctcaa accaatactt tatggttggc ctgtttaagt cgagcattga
      661 tgggggcggg agctgctttt gctgccgtgt cttgttttaa gctagccgct gtctggtttt
      721 ctccaaaacg atttgctcta gtatcaggga tgtttatgac agcagctatg ctgggtgctg
      781 tgggagggca gatgcctttg gcatttttgg ttcaacatga aggttggcgc aaggcgcttg
      841 aattagtaag cgtgatgggg attatcctgg gggtcgtgta ttttctcatt ttaagagata
      901 agcctgcaca aacgcagcct atgccaaata gcaaggaacc tgttattcaa ttgttaagac
      961 gtattatcgt taataagcag gcctgggctt tgtctttata tagtggatta gcatttgctc
     1021 ctgtttcggt ttttggtgga ttatggggag ttcctttttt ggaaaaggcc tatctcttat
     1081 ctcgtactga tgcagccctt gcgatttcat ttatttttgt cggttttgcg gcaggcgcgc
     1141 cattttgggg atggttttct gattttatca ggcggagaaa gcctgttttg tttacaggaa
     1201 cgtgttctgc tctattgtgt ttattggtag ttatttatag ctcaaaccaa aatttgctta
     1261 ctttaattat tcttttattt ctctttggtt ttggagcgag tggatttttt accagctttg
     1321 caatgatcag ggaattattt cctttggtac ttgtagcgac agtacttggt attatgaata
     1381 cgtttaattc ggtgtttgag gctttgtttg agccactggt tggtgctttg ctggattgga
     1441 catgggaggg gaccatggtg gatggtattc atcaatttac tttacacggg tactattttt
     1501 ctcttttatt gttgcctctg tctttaattt tagccttatt gaccttgtta ttgattgatg
     1561 aaacatattg tcgaacaaag gaggaggtag agtaaacctc cccattattg attgcaggtt
     1621 attttttgag gcagaaaacc atatgggcct tttgcgtttg gattaaaaat cacagtacat
     1681 ccttttgttt tttgaggcaa ttgttgtgtc agttcaattc ctgtttgatt gtaatgacac
     1741 acaatgtaaa tggtatcatg aggagaaaac ttccattcgg cttttttctt attgatacgg
     1801 tttggtttta agctggcttg acctttgggg tggccggaat aaaaggaaac attacccaga
     1861 taattgtttt taatcccgct cagggtttcc catccatccg gagatgtctg tatacgttca
     1921 agcgtattaa tttctttagg gcattgaggg atataggttt ttgcttgtaa aaaagcagaa
     1981 aatcccatta atgccaagcc aattatcctg ttccaattgc acacggaaga ccccttattg
     2041 agtaaacagt tatcatatca ttaaatgatg aaaatgatta tctggttgcc ttcaaattaa
     2101 tccttgcaag tattgtgagc tctggatcat tttttaataa ttcaaatatt ctgtataaat
     2161 ttaaaggcaa taaaaccgaa tgcaaaataa atataggatg taaatgataa cccaaaccat
     2221 atgtaatgaa cgcaacatta ctacaaactg ctatgagtct taatgtcaga atctttttga
     2281 cataaaatgt tgcaaagact aaagaagaag ctacatatcc aaccaaatca atcattgatt
     2341 ccattttaac ctccacttcc aaatcccttt cattcaacat aacactgacc agaggagatt
     2401 agcaagtttt ttaatcaatt cttatggttt tcttaagcgt tgaaatgtat aatcgatgat
     2461 ctttgagtta aatatattac caaacaggaa ttttttgttt atatttggag acaatatgcc
     2521 ccttacttcg ttaaaaaaat ttttaaaaga tattggaaag gaaaatataa aacagcatca
     2581 ggtaaaactt gtcttaaaaa catctcagga tattcaatta tttttaaatg ctttgcgaga
     2641 ttcgagaaat cacggaatct cgtccttatc tgaacttgat ctaagtgata ctcgctttac
     2701 taatcaagag ttgagtgatt tagtcactgc tcttaataat atacctggaa ttaaatcttt
     2761 acgcttggat tcttgtggtc ttaaggatag tgacacagtg gagctttcca aattaactca
     2821 catcaaaaaa ttatcattga aaagtaatta cttaaagaac cgccctatgt ttaattctat
     2881 gcttgaagca ttgtatttgg attataatac agaacttagc gcaagttatg tgttatttag
     2941 tttaagtcgc aatgctgccg ctttaaaaaa attatccttg cgtaactgtg gcgttactga
     3001 tgccaattta gagtatttga ctcggcctga gtccaggtta aaaagtctga cacactttaa
     3061 tttgcgaaga aataatatca ctcaccaagg agtggatagc tttgctcatc ttcaatcgtt
     3121 gactactatt gatttaagtc aaaatactgg gattggtgat gagggtgtat ccaggcttgc
     3181 gcctttaaag cagttaagaa ccctgtattt ggataattgt ggaatagggg gagagggaat
     3241 taaggcaatt gccaaaatga atttgcagac tgttgatttg agtttcaatc ccgggttaaa
     3301 aaaagaatgg ggattggatg acattcgacc taatcatacc attcgaacat tattgctaac
     3361 attttgcagc ttaaatgata atcatgccaa gcttattgtt tcgaagtttc cagcggctac
     3421 cgatttaaat gttgcgaata ataatatgac cagggcaggg gtaaagactt tattaagtaa
     3481 cccgattata gaaaacttgg atgtcagtac ccaatcgctt tatgcaaaat caacaggagc
     3541 ttctggcact ggcatgatct ctccccgaat aatgatgaag aaaaaggaaa taaaacaaca
     3601 ggaaaaagaa aaagcgcagg atttgctaga tactatctgt aatacaatca cattaaagag
     3661 tattaatctg gaacatacag gcataacctc caggatgtta ttaagtttaa ttccagatga
     3721 aacagatcac aaacggtatc ttaagaaaat taatggtgtt tcctgtaaag agcttaagcc
     3781 aaaattagaa caacaaattg ccttgagaaa agctgaaaaa caaagttctc ctcctgtaat
     3841 caatgcagtg gaagattcca aaacaagtga tttaatggtt aaatctggca gtagttccaa
     3901 gactgagatg caaaccaggg aagatgactt gatagccagt cctgatgaaa aaataaaagc
     3961 tctggaacta gagaatcaaa aattaaagga tgaattggca acagctcgta aaagaatttt
     4021 tgaattggaa aatcagtctt tatctggatc taaaacaaga aaaaaaacct caataccacc
     4081 attggcaatc ccggtgatgt ttcaggattt tgcaaaacca ggaaaaaatg aaacagatga
     4141 caacaccatc aactcaataa cggcaatccc caaatagcac aattattgta aatgtattca
     4201 gcatgactaa catccgcttg gatgttagtc atgtattgtt ttactttttc ttgccaaaaa
     4261 tgtgagttaa gtgaccaata atagtttcaa cggcatttcg gcatgccggt gtttcagaga
     4321 gatcattgag catcaggaaa tcatggattg tgcccagatg gcgaactgca gtcactgtca
     4381 cacccgctgc attgagttta tgggcatagg cttcgccctc atcacgcaaa acatcacact
     4441 ctccagtgat gactaatgct ggtggtaggc ctttaagttg ttcaagagaa gcttgtagcg
     4501 gacttgctgt aatttccttt cttttttctt tattgggcaa atacttatcc caaaaccact
     4561 ccatcgcttt tttggttagc caggggcctt cagcaaattc tttataggaa gcgttatcaa
     4621 aattggcatc agttacagga taaataagta cttgataatc aattttgggg ccaccacgtt
     4681 ctttagcaag aagagtcatg acgctggtca tattaccacc aacactgtca cctgcagcga
     4741 caaatcgtga agtatccaga ttaaattgct taccatgttc tgctatatat ttcatggcag
     4801 cgtaagattc ttctatttgt gtcgggtact gagcttccgg agctaatgtg tatttaacaa
     4861 acacgactgc ggcatgagta cccactgcta tttctcgtac cagacgacca tgagtttgat
     4921 aatcgccaaa aacccagcca gcaccatgaa aaaacatgat gacaggtaag gcttcttttg
     4981 cgcctttagg gcgaacaatg cgaatgtcaa ccttaccgcc aggtcctact ggcaaagttt
     5041 tatcctcaac atcgacatca ggtttctcgg tgggcaaggc ttgtagttga tcaaatattg
     5101 ccctaccttc tgtaaccggt atgtcataaa tcggttttcc acccgcattt tgtatttttt
     5161 caacaaatga ccaggttttt ggttctattc ttttgcttaa atccattttg attttcctta
     5221 atttataaat agggatgact tcttatgtat agtatattga attgaaaaat caaggaaatt
     5281 tgaattcgtt tgtggataat aataacaggt ggatggtgtc tgggattgga tttacgatga
     5341 attaaatttt gttttgaatc gctcaaatta atttgca
//
LOCUS       DACVWI010000185         5333 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.185, whole genome shotgun sequence.
ACCESSION   DACVWI010000185 DACVWI010000000
VERSION     DACVWI010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5333
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.185"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..294
                     /locus_tag="JBH85_12405"
     CDS             <1..294
                     /locus_tag="JBH85_12405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947002.1"
                     /translation="KKDILASELCKFLGINSHIKAKELTHDKDGVSRDIATLIMIFLN
                     DNSIPGYQSDDEEDFKGWLSKLALSTNVGYLELITYIEQFINDIFNEFQFVTK"
     gene            324..1664
                     /locus_tag="JBH85_12410"
     CDS             324..1664
                     /locus_tag="JBH85_12410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947003.1"
                     /translation="MAYTKWTYEKLIEEARKYQTKQEFRTKNCSAYAAAKYQGIIEKV
                     CSHMIPAHMSWSDEMLATEAKKYQSKIDFKNGSSGAYQAAHKRELIDQICTHMDNLHP
                     KWTEEKIRDEASKFKTKSEFRASNLGAYKAAWKRGILNDVCMHMIDMKTDWTYEMLLS
                     EAKKYSSRGEFSSISNAYQIAAKRGILDEICSHMEVHHVNWTDEMIFEEATKFKSRSD
                     FKLSSPLAYAAAQRRTILDKACGHMEFKHKYWSNEEIAQEAKKYKTRNELQMRSTAYG
                     IAHKRGILDEVCSHMKYTERVNWTPKLLAEEALKYSTRADFYRNNNNAYVAARRFGVL
                     DDITEHLEYLDRYNTRDVVYLWHAEADIYKVGITSENLGDKRIYDVAKDAGFIPKIVM
                     LENVGTVMAKRIESQILKLGQPLSFRNSFPGSSEFRHFSSTDLNKAIELIKTGN"
     gene            complement(1796..3166)
                     /locus_tag="JBH85_12415"
     CDS             complement(1796..3166)
                     /locus_tag="JBH85_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947004.1"
                     /translation="MSQDSFQSSYTPVHYGKSASEFSKERGQWLLANVEQQIGWPQKR
                     ALISYRGRKILLLPATSKYYAGVAVITKIGQLDEGKIFVMQFLSALAWYRPSKIDIIQ
                     WTNSATQGSLNQYLRLELTKRPGMTALFFRPTMLPDPKNKNAQLALSLFREGLSLNHL
                     GYSFLSYYKIINMRYPNGATQKQWIRSNLYKLESLKYLSDRLSSLKQKHNDLAYYIYT
                     ECRCAVAHAGGTAPVYDPESLYDEIRFYEIQPIAHALAKIIIEDEFCIKTTNTILKEH
                     LYELEGFHYLIGDKVTKRLKDRESISTTEIQIPHLISLRLWGKRKFRAFEKLSVTVIG
                     INKGIVQLSLTRDGRVIIPLALDFPSEKLIFEPMTGADLSDDGTPNAASQFADTYRFY
                     GEVIANGILEVWDVNSNLILGRLLEYLPVNILPSQTKDNLIKIEKRWRDEAKRRVVAI
                     KSPNGK"
     gene            complement(3281..3610)
                     /locus_tag="JBH85_12420"
     CDS             complement(3281..3610)
                     /locus_tag="JBH85_12420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947005.1"
                     /translation="MSKSIEPHQFDLAKDNGEKFILPYAQYFNLEDLNKLIKGVIENK
                     NPWPINQIIHAGGMDEIFRQLYQDKKDISGADDMWIQLWDTILAENANDNFHGFEELL
                     KNNNIIQ"
     gene            3648..4822
                     /locus_tag="JBH85_12425"
     CDS             join(3648..3912,3912..4822)
                     /locus_tag="JBH85_12425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611931.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAU0947006.1"
                     /translation="MSIRRKYTKEFKLDAISLVTEQGYTCPEAARSLGINSNILSRWI
                     REAAENNENAFRGNGKLTEEQLEIRQLREEVRRLTMEKEILKKANGLLCERSEIKYSF
                     IAQHKKTWPVGMMCHLMGVTSSGYYSYQKRKSTKPNNEPEHEELLEWVKKISESSKFS
                     YGNRRIRKALNALGYPVGRRKTRRLMREAGIFVRYKKKYKVTTNSNHKQPIFDNVLNR
                     KFQVNEPNRAYVSDMNYIPTHEGWLYLTVVIDLFSRKVVGWNMSSRMKADTVCDALTM
                     AIWQRKPKAGLIVHSDRGSQYASKQYRSLLNQHGLVGSMSKKGDCWDNSVAESFFSRL
                     KDELVHWRNYQTRREAKQDILDYMTMFYNNQKLHSSLDYLSPNQFENRYWGLMKKVA"
     gene            5021..>5333
                     /locus_tag="JBH85_12430"
     CDS             5021..>5333
                     /locus_tag="JBH85_12430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site specific recombinase"
                     /protein_id="HAU0947007.1"
                     /translation="MEQRNINLYTLQQELLKIEKQINASTSRFIETTSQVIQRALEKK
                     IEELEEQKLQILQSIELHSNNKIDFETALMAVLSFMENPYKTWVNGDLKQKKLVQRLV
                     FI"
BASE COUNT         1824 a          903 c         1012 g         1594 t
ORIGIN      
        1 aaaaaagata tattagcttc tgaactgtgc aaatttttgg ggattaattc tcacattaaa
       61 gctaaagagc tgacacatga taaggatgga gtatctcgag atatagctac tttaattatg
      121 atctttctaa atgataactc aattcctggc tatcaaagtg atgatgaaga agactttaaa
      181 ggatggctct caaaattggc attaagtact aatgttggtt atttagaatt aatcacttac
      241 atcgagcaat tcatcaatga catttttaat gagttccagt ttgttacaaa ataaaaaaat
      301 gaaaaactcg gataagtaat actatggcat acacgaaatg gacatatgaa aagctgattg
      361 aggaagctag aaaataccag acaaaacaag agtttcgtac caagaattgc tcagcttatg
      421 cggcagccaa gtaccaaggc attatagaaa aagtttgctc tcatatgatc ccagcccata
      481 tgtcttggtc tgatgaaatg ttggcgactg aggcgaagaa atatcaatct aaaatcgact
      541 tcaagaatgg ttcttccgga gcgtatcaag cagcccataa acgagagctt atagatcaaa
      601 tctgtactca tatggataac ctacatccaa aatggacaga ggagaaaata agagatgaag
      661 cttctaaatt taaaacgaaa tcagagtttc gtgccagtaa ccttggtgct tacaaagcgg
      721 catggaaacg cgggatttta aatgatgtct gtatgcatat gatcgatatg aagaccgatt
      781 ggacgtatga aatgctctta tcggaagcta agaaatatag ttcaagaggc gagtttagct
      841 ctattagtaa tgcttatcaa atagctgcaa aacgtggcat tttagatgag atatgttcac
      901 acatggaagt acatcatgtt aattggactg acgaaatgat ttttgaagaa gctactaaat
      961 ttaaatcacg aagtgacttt aaactatcaa gtcctttagc atatgcagca gcccaaagaa
     1021 ggactattct ggataaagca tgcgggcaca tggaatttaa acacaaatat tggtcaaatg
     1081 aagagatagc tcaagaggct aaaaagtata agaccagaaa tgaactccaa atgagatcta
     1141 cagcctatgg aatagcacac aaaagaggta ttttagatga agtttgttct catatgaaat
     1201 acacagaaag agtaaattgg acaccgaaat tactagcaga ggaggcatta aaatattcaa
     1261 ctagagcaga cttttacaga aataataaca atgcatatgt ggcagctaga cgttttggag
     1321 tactagatga tattacagag catttagaat atttagatag atataatacg agggatgtgg
     1381 tttatctgtg gcatgcggag gctgacattt ataaagtagg cataactagc gaaaatctag
     1441 gtgataagag aatttatgat gttgccaaag acgctggatt catacctaaa atagttatgc
     1501 ttgaaaatgt aggtactgta atggctaaga gaattgaaag ccaaattctt aaacttggtc
     1561 agcctttatc atttagaaat agctttcccg gttctagcga atttagacac ttttcttcaa
     1621 cagacttaaa caaagcaatt gaacttatta aaactggcaa ttgaacgttt cgggtgtaaa
     1681 agtgattcat gttggtcagc aatagtggcg aaattgtcag attagattgt aatcaataat
     1741 tcatggtcag gtcatatcca gctttttaca cttaaataaa tatgcatgcc ttttctcatt
     1801 tcccattggg ggatttaatc gcaacaactc ttctttttgc ttcatccctc catctttttt
     1861 caattttaat caaattatct ttcgtctgcg aaggcaatat attaactggt aaatactcaa
     1921 gtaatcgacc taagattaaa tttgaattta cgtcccaaac ctccagaatg ccgtttgcaa
     1981 ttacctctcc ataaaatcga taagtatcag caaattgtga tgccgcattt ggtgtgccat
     2041 catctgataa atcagcaccg gtcattggtt cgaaaattaa tttttcactg ggaaaatcta
     2101 atgctaaagg aatgataact ctaccgtcac gcgtcaaact tagttgaaca atacctttgt
     2161 taattcctat aactgtaaca gataattttt cgaacgccct gaatttcctt ttaccccaaa
     2221 gacgtaagct aattaagtgt ggaatttgaa tctctgttgt tgatatactt tctctatctt
     2281 tcaatcgttt agttacctta tcccctataa gataatgaaa gccttctaat tcatacaaat
     2341 gttctttaag aatagtattt gttgttttaa tacagaattc gtcttctatt ataatttttg
     2401 ctaaagcatg tgcaattggt tgaatttcat aaaaacgaat ttcgtcatag aggctctctg
     2461 gatcataaac aggagccgtt cccccggcgt gcgccacagc gcatcggcac tctgtataaa
     2521 tataatacgc aagatcatta tgtttttgtt ttaaactact taatcgatcc gacaaatatt
     2581 tcaaactctc gagtttatat agattacttc taatccattg tttttgagta gcaccgttag
     2641 gatatctcat gttaataatt ttataatagc ttaagaatga ataccctaaa tgatttaacg
     2701 acaatccctc tctgaataat gataaagcga gctgggcatt tttattttta ggatctggca
     2761 acatggttgg ccggaaaaat aatgctgtca tacctggccg tttagttagc tctaacctta
     2821 aatattgatt tagagaacct tgagttgctg aattagtcca ttgaataatg tcaattttgc
     2881 taggcctgta ccaggctaat gcacttaaga actgcattac aaaaattttg ccctcatcta
     2941 actgacctat tttagtaatt accgctaccc ctgcataata tttacttgta gccggcaata
     3001 ataaaatttt gcgaccgcga taagaaatta aagctctttt ttgaggccag ccaatctgct
     3061 gctctacgtt ggcaagaagc cactgacctc tttctttgct aaattcagaa gctgatttcc
     3121 cataatgaac aggagtataa gacgattgaa aactatcttg gctcatattt tttaattctg
     3181 tccaatccta ttaaagtgat tggtatgata ttgcagtaac tattcataat gaagagaaat
     3241 tctatgcttt ttcaactcca tatatagcaa attttgtagt tcattgaatg atattattgt
     3301 tttttagtag ttcttcaaat ccatggaaat tatcattagc gttctcagcc aagattgtgt
     3361 cccataattg tatccacata tcatcagcac cagaaatatc tttcttgtct tgatacaatt
     3421 gacgaaagat ctcgtccatg cctccagcat gtattatctg attgattggc cagggatttt
     3481 tattttcaat aactccctta ataagtttat tcaaatcttc taaattaaaa tattgcgcgt
     3541 atggtagaat gaatttctcg ccattatctt tggcaagatc gaattgatgt ggttcaattg
     3601 atttagacac tccagttaag agataatttg tttaattgga ggtcacaatg tctataagaa
     3661 gaaaatatac aaaggaattt aaactggatg cgattagttt agtaactgag caaggataca
     3721 catgtccaga agcagcaagg agcttgggaa ttaattcgaa tattttgagt cgctggattc
     3781 gagaggcagc ggagaataat gaaaatgctt ttcgtggaaa tggaaaattg acggaagagc
     3841 aacttgaaat tcgtcagtta cgagaagaag tcagaaggct gacaatggag aaagaaatac
     3901 taaaaaaagc gacggtcttc tttgcgaaag aagcgaaata aaatattcgt ttatcgccca
     3961 acataagaag acctggccgg ttggcatgat gtgccatctc atgggcgtta cttcttctgg
     4021 atactatagc tatcaaaaaa ggaagagcac aaaaccgaac aatgaaccag aacatgaaga
     4081 gctattggag tgggttaaaa aaatctcaga atccagcaag ttttcgtatg gaaatcgcag
     4141 gataaggaaa gcactgaatg ctcttggtta tccggttggc cgcagaaaaa cccgtagatt
     4201 aatgcgtgaa gcgggtattt ttgttcgcta taaaaagaaa tacaaagtga caacaaacag
     4261 caatcacaag caacctattt ttgataatgt tttaaacagg aaatttcagg tcaatgaacc
     4321 caatcgtgcc tatgtgtccg atatgaacta tatcccaacc catgagggct ggttatacct
     4381 gacggtggta attgatttgt tttcccgaaa agtggttggt tggaacatga gttcgagaat
     4441 gaaggctgat acagtttgcg atgcattaac aatggccatt tggcagagaa agccaaaagc
     4501 aggccttatt gtgcattccg acaggggctc acaatatgcc agtaaacaat atcgcagcct
     4561 tctcaatcaa catggccttg tgggcagcat gagcaaaaaa ggtgactgct gggacaatag
     4621 cgttgctgag agttttttca gccgcttgaa ggatgaatta gttcattggc gtaattatca
     4681 aaccagacgg gaggcaaaac aagatattct agattacatg actatgtttt ataacaatca
     4741 aaaattgcat tcgtctttgg attatctaag tccgaatcaa tttgaaaatc ggtactgggg
     4801 gttaatgaaa aaagtggctt aactggggtg tacaaatttg cttgacctcg tcaaataccc
     4861 ctattatcgt tgtaacaata aacaacgtgg cttaacgaag aaaaacatta gtcgagaagt
     4921 attggaaaat ttttttagag gtagtttaaa agaaattact cccactaagc agatagtcac
     4981 gctcactaaa gcgattacac aagagcattt taataaaaaa atggaacaac gaaatattaa
     5041 tctttacacc ttgcagcaag agttactcaa aattgaaaaa caaataaacg ctagtaccag
     5101 caggtttatt gaaactacta gccaggtaat acaacgcgct ttagagaaaa aaattgaaga
     5161 attagaagag caaaaattac agatattaca atctatagag cttcattcta ataacaaaat
     5221 tgattttgaa accgcactta tggctgtttt atcatttatg gaaaaccctt ataaaacatg
     5281 ggttaacggt gatttaaagc agaaaaagtt agttcaaagg ctggtattta taa
//
LOCUS       DACVWI010000186         5293 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.186, whole genome shotgun sequence.
ACCESSION   DACVWI010000186 DACVWI010000000
VERSION     DACVWI010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5293
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.186"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(105..1037)
                     /gene="mavJ"
                     /locus_tag="JBH85_12435"
     CDS             complement(105..1037)
                     /gene="mavJ"
                     /locus_tag="JBH85_12435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavJ"
                     /protein_id="HAU0947008.1"
                     /translation="MTITHTAAGGITMTLELIRNGETDTNDYEEHLDSFGYETLEKSL
                     KEDAKSICQFFCNEELVLQGLKKLVTQFYQFNQPEKKTLMQFFDGWGSKNHFNQGTTS
                     NEKIPFETSRNFHFPNHTPVLCGELTADLFNNVLLKQGYLSADIGAGPKHGKWAHSIQ
                     FFLLEEARKAGQLNLHANNVCEFIKKISQIHGQYESLSLWSILFDSFDETFTCPNLIT
                     QTLTSQWDNSKEAQFLADRLNSFQKKFEKAASTENNYNAYANKKYLSKIDKANYVKYK
                     DKCAILWFAPQDKKTIPKPSSQEELKQNQLSFLN"
     regulatory      1179..1282
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1269..1535
                     /locus_tag="JBH85_12440"
     CDS             1269..1535
                     /locus_tag="JBH85_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947009.1"
                     /translation="MSIVIFSGIVAFITSFIGLLPQIVKSLKTKSTEDLSMMMLVNYL
                     VCSLAWIIYGSSTNSFFVTSSNVVGLIVSFLLILLKRRYDARCN"
     gene            1516..2169
                     /locus_tag="JBH85_12445"
     CDS             1516..2169
                     /locus_tag="JBH85_12445"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HAU0947010.1"
                     /translation="MMLDVINFKDYRSILCLNGDLPDPSFFHKRKLPVIAADGAANVL
                     CNLGVFPDLITGDLDSIQPALLENHSFLHLPDQGSTDYQKAMHYLQTHDLLPAIVVGI
                     NGGYLDHILNNINIFMDTNCLLYSPPLKGFVVNEKLRVNFILPVQTKISLIGIPEVVL
                     SSEGLKWELKHSHLSFPGKNSCFNRTQTAEISLEVHQGAALVLIYEDAIEDAGVSSL"
     gene            complement(2328..2852)
                     /gene="trmL"
                     /locus_tag="JBH85_12450"
     CDS             complement(2328..2852)
                     /gene="trmL"
                     /locus_tag="JBH85_12450"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HAU0947011.1"
                     /translation="MHPATLFLALNKSIKMAARMLLENHMIHIALYQPEIPPNTGNII
                     RLCANTGAQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYENWQTFLQSHSQRRLFC
                     CSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQYSTIRIPMRENNRSLNLSNAVA
                     IILYEAWRQMDFNM"
     gene            3055..4473
                     /locus_tag="JBH85_12455"
     CDS             3055..4473
                     /locus_tag="JBH85_12455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homospermidine synthase"
                     /protein_id="HAU0947012.1"
                     /translation="MDKNHNTKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVT
                     IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSIGISSLALIIL
                     CNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITHGANP
                     GLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAMTLGIKVIHVAEQDSQVTYPPKS
                     PGEFVNTWSANGLILEGLQPAEIGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMV
                     RSWTPTLGAFHGFLITHAETISLTNFLTLKNGSELLYRPTVHYAYNPCPDARLSIFEL
                     KSNEWKPQNKNRLILNEIIDGCDELGVLLMGNQRGAYWYGSTLSIQEARQIAPYNNAT
                     SLQVVASMISGIIWAIEHPDEGIVEPEEVDHQYIIDIAKPYLGKVGGYYTDWTPLKNR
                     GELYPEEVDLSDPWQFFNIRVN"
     gene            complement(4524..5216)
                     /locus_tag="JBH85_12460"
     CDS             complement(4524..5216)
                     /locus_tag="JBH85_12460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HAU0947013.1"
                     /translation="MTMKFPFQIIDLTHSVSPESPGWDLDCGFTHSNFIDYEDCTSEI
                     KFRVQQIHSPLGIGTHMDAPAHCITGAASITDLDLHRNYLLTQSVLINVSHQTDEHYQ
                     ITKQDILDFEARYGRLKKNVFVLFYTGWDKHWPNPDKYRNNLVFPSISAHAAQLLLER
                     NIAGIGIDTLSPDTADSGYPVHQLLLQAGKYIIENVANAHSLPPIGAWTLALPWKIIN
                     ATESPVQLIGLV"
BASE COUNT         1560 a          918 c         1046 g         1769 t
ORIGIN      
        1 tttcgattta aaacaatttt ttgctttgat aaagagttgc tatccaagcc agggatgttt
       61 tatttaagtt tatcgatata aagtcatatc ctcttataat aagcttaatt taaaaagctt
      121 aattgatttt gtttcaattc ttcttggctg gaaggttttg ggatagtttt tttatcctgt
      181 ggcgcaaacc acagtattgc gcatttgtct ttgtatttga catagttcgc tttatcaatt
      241 ttgctcagat actttttatt cgcatacgca ttgtaattat tttcagtaga tgcggctttt
      301 tcaaattttt tttggaaact atttagtctg tctgctagaa attgagcttc tttcgaatta
      361 tcccattgtg atgtcaaagt ttgagtaatt agattagggc aggtaaaggt ttcgtcaaat
      421 gaatcaaaga gaatgctcca taaactcaat gattcgtatt gaccgtgaat ttgtgagatt
      481 tttttaataa attcgcagac attattggca tgaaggttta attgtccagc ttttcttgct
      541 tcttccaaaa gaaaaaattg aatggagtgt gcccatttgc catgctttgg ccctgctcca
      601 atatcggcag ataaataacc ctgttttaga agaacattat tgaataaatc agcggttaat
      661 tcgccgcata aaactggagt gtgattaggg aaatgaaaat tgcgactggt ttcaaaaggt
      721 atcttttcat ttgatgtagt cccctggtta aaatgatttt tacttcccca gccatcaaaa
      781 aattgcatta atgttttttt ctcaggctgg ttaaactgat aaaattgtgt caccaatttt
      841 tttaaacctt gtaaaaccag ctcttcatta caaaagaatt ggcatatcga cttggcatct
      901 tctttcaagg atttttctaa tgtttcgtat ccaaaagaat ccaggtgttc ctcataatca
      961 ttggtatctg tctctccatt tcgaataagt tctaatgtca tagtgattcc tccagctgct
     1021 gtatgagtta ttgtcaaata ccgatttgag agttatttga ggagcttaat tccttttttg
     1081 aactaaagga ttatcaatta atcataaact gataaaaaaa gaaaggagta ttttgttgct
     1141 attaaattgc ggtctgctca tttcgtgata aaatataagt ccagcattag gggtgccaat
     1201 tgataagttg gctgagagga tcacccaacc ctttgaacct gatctcatta gtctgagcgg
     1261 aggaaaatgt gtcaattgtt attttttctg gaatagttgc ttttattacc tcgtttattg
     1321 gacttttacc gcaaatcgtt aaatccttaa aaaccaaatc aactgaagat ctttccatga
     1381 tgatgttagt gaattatcta gtttgttcgc tggcctggat catttatgga agcagcacaa
     1441 actcattttt tgtaacgagt tccaatgtag tgggtttgat agtgagtttt ctgctgattt
     1501 tattaaaaag acgttatgat gctcgatgta attaacttta aagactatcg ttctatttta
     1561 tgtcttaatg gtgatttgcc cgatccttcc ttttttcata aaagaaagct gccggtcatt
     1621 gcagctgatg gtgccgctaa tgtgttatgt aaccttggtg tctttcctga cttaattact
     1681 ggagatctgg attctattca gcctgctttg ttggaaaacc attcttttct tcatttacca
     1741 gatcaaggga gtacggatta tcaaaaggct atgcattatt tacaaactca tgatctattg
     1801 cctgctatcg ttgtagggat aaatggtggg tatttggatc atattctgaa taacatcaac
     1861 atttttatgg atacaaactg ccttttatat tcgcctcccc tcaaaggttt tgttgtcaat
     1921 gaaaagttga gggttaattt tattttacct gtccagacta aaatctcgtt aataggtatc
     1981 cctgaggttg tcctgtcttc tgagggtttg aagtgggagt taaagcactc acacctttct
     2041 tttcctggaa aaaattcctg tttcaatcga acacaaacag cagaaattag tttggaggtt
     2101 caccagggcg ccgcccttgt tttgatttat gaagatgcta ttgaggatgc tggagtttcc
     2161 tctttataag gaataaagac ttacgccctc cccaatctct ttgttaaaaa atatttttgc
     2221 ctcggccttg tggtttttcg taagtcctgt ttatattaga gtactgcttg cataacctgt
     2281 tccttccatt gctgtaatcg ctatcaggtg gattaccaag ttaatgctta catgttaaaa
     2341 tccatttgcc tccatgcttc gtacaatatg attgctacag catttgataa gttgagacta
     2401 cgattatttt ctctcatggg aatccgtatt gttgagtatt ggttcagtat ttgttgaggt
     2461 aagccgcaag attcgggtcc aaataataag atgtcatctg ccttataatc gacgtcacta
     2521 tacttcactt ttccttttgc gctacagcaa aataatcgtc gttgtgaatg agactgcaag
     2581 aatgtttgcc aattctcata atgcaatatt gaggcccatt gatgatagtc aagaccggct
     2641 cgtcgcattt gtttatcttc caaagtaaag cctaatggat gaatcaaatg cagttgagct
     2701 ccagtattgg cgcagagtcg aataatattg cccgtgttcg gtggaatttc tggttgataa
     2761 agcgcaatat ggatcatgtg attttccagt aacattctgg ctgccatttt aattgattta
     2821 ttcaaagcca ggaatagagt ggcaggatgc aattttacta catactttaa aaatcaagca
     2881 gggagttgat gtgtctaatt ttttactcaa caggctgtct gaattcaaca tagctactac
     2941 aatattagta tgccatatga aagtttttga tgtctgttgg gtatgatcat tgttgaatag
     3001 ttgttgagta ttaaaaattc aaattaaact gggccgggaa gttaaggatt catcatggat
     3061 aagaatcata atacaaaaaa aatcttgttt aaaaatcgtt ttgtcatatt aggatttggt
     3121 tgcgttggtc aggcattaat gcctttaatc tttgagaaat ttgatatcaa accatcgcaa
     3181 gtgacaatca ttgccgcaga agggacaaag gtcgatgttg ctcaacaata cggagtttca
     3241 ttcaagttac aacaaattac tccccaaaat tatcttgaag tgattggtag tactttggaa
     3301 gaaaacgatt ttttaattga tgtgtcaatc ggtatatcaa gtcttgcttt gattatacta
     3361 tgtaatcaaa aaggagcatt gtatattaat gctgcaactg agccgtggaa agaagaattt
     3421 gttatggaga agatggcgct taatcgccga accaattatt ctttgcgtga agaagtcctt
     3481 cgcttaaagg ataaaactca aaaaacagcc ttaattactc acggggctaa tccgggtctt
     3541 gtttcacatt ttattaaaga ggccttgttg aatattgcaa aagataatgg ccttactatt
     3601 aacagaccta aaaatgcagc agaatgggct aatctcgcca tgactttggg aattaaagta
     3661 atccatgttg cagagcaaga ctctcaagtt acctatcctc caaaatcacc aggcgagttc
     3721 gttaatacct ggtccgctaa tggtctgatt ttggaaggac tgcaacctgc tgaaatcggg
     3781 tgggggacac atgaagctca ttggccccat gacgcttatt ctcatagtaa tggaccacaa
     3841 tgcgcgatct atctgtctcg ccctagtgcc ggtgtaatgg tgcgttcatg gacgccaaca
     3901 ctgggtgctt ttcacggttt tttaattact catgcagaaa ctatttcact taccaatttt
     3961 ttaacattaa aaaatggatc tgaattattg tataggccaa cagttcacta cgcctataat
     4021 ccttgtccag atgccaggct ctccattttc gaattaaaaa gtaatgaatg gaaaccacaa
     4081 aacaagaatc gcctgatttt aaacgaaatc attgatggat gtgatgaatt gggtgtgttg
     4141 ttgatgggta atcaaagagg ggcgtattgg tatggttcaa ctctttctat ccaggaagca
     4201 aggcaaattg ccccttataa taatgcaacc agtttacaag ttgtcgccag tatgatttca
     4261 ggaataatct gggcaataga gcatcctgat gagggtatcg tagaaccaga ggaagttgat
     4321 caccaatata ttattgatat tgccaaaccg tatcttggaa aagtcggcgg ctattacacg
     4381 gattggaccc ctttaaaaaa tagaggggaa ctttatcctg aagaagtgga cttatctgat
     4441 ccctggcaat ttttcaatat aagggttaat taaaaggagt aacgtattgt aataattagt
     4501 attaatcaat gaactatgca ttatcatacc agtccaatca attggactgg tgactccgta
     4561 gcattgatta ttttccatgg taaagcaagg gtccaggcgc caatgggtgg cagggaatgt
     4621 gcattggcaa cgttttcaat aatatattta cctgcttgta ataacagttg atgcacagga
     4681 taacctgagt ctgcggtatc aggagaaagc gtgtctatgc caatgccagc aatatttctt
     4741 tcaagcaata gttgggctgc gtgagcacta atgcttggaa aaaccaaatt gttgcgatat
     4801 ttgtcaggat taggccaatg tttatcccaa ccagtataaa aaagcacaaa cacattcttt
     4861 tttaacctcc catatctggc ttcgaaatcc agaatatcct gttttgtaat ttgataatgt
     4921 tcatccgttt gatgactaac attaatcagc acactttgtg tgagcaggta attacggtgc
     4981 agatcgagat cagtaataga ggcggcccct gtaatacaat gggccggagc atccatatgg
     5041 gttccaatcc ccaagggtga gtgtatttgc tgaactctga atttgatttc cgatgtacag
     5101 tcttcataat caataaaatt actatgggta aatccacaat ccagatccca accaggggat
     5161 tcaggtgaaa cagagtgtgt taaatcgatt atttgaaaag gaaatttcat agtcatttga
     5221 gagagcgatg gattatttca attaaattat cataaaaaga atcaggatca atgaaactaa
     5281 tttttaattt agg
//
LOCUS       DACVWI010000187         5279 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.187, whole genome shotgun sequence.
ACCESSION   DACVWI010000187 DACVWI010000000
VERSION     DACVWI010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5279
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.187"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..322
                     /locus_tag="JBH85_12465"
     CDS             <1..322
                     /locus_tag="JBH85_12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type IV secretion protein Dot"
                     /protein_id="HAU0947014.1"
                     /translation="NIIFNYQNIKNKNPHDLFNELFKKFTEDIGYSGMGSRSIEALKR
                     ALAKNNITYTNGYYGKTATLTSLLWSKEPPVITDEKNIFKLSDEKHLSENKEDIRGKG
                     ITNI"
     gene            complement(388..954)
                     /locus_tag="JBH85_12470"
     CDS             complement(388..954)
                     /locus_tag="JBH85_12470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HAU0947015.1"
                     /translation="MKKIICLLSNLVLTVGIMSAHAETAIIKTSEGNITCELFTKEAP
                     NTVANFVGLATGTKEFKDIKTGKMVKRPFYNGLTFHRVIAGFMIQGGDPLGNGTGGPG
                     YTFDNENTNASFNKPGVLAMANAGPNTNGSQFFITVAPTPELQGGYNVFGQVISGQEV
                     VDKISKMPTDPQDKPITPVVIENITIQK"
     gene            1082..2614
                     /locus_tag="JBH85_12475"
     CDS             1082..2614
                     /locus_tag="JBH85_12475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HAU0947016.1"
                     /translation="MLCESFMSDSEYESDSESDSDSKSEYELRTLPSKIHFVWVGGPI
                     RAQYLRTIMDVAAVALKSGFEVNLWVDNEMNYIKTSTQEGIDIPNLRIRNVHELEEGM
                     RNAPFYEEGDRYKKFWEYVNRERVGFKNLAAAADFFRFEILRQEGGYYFDTDIVFYLD
                     ENSQFVADEVAFGIKAHVDLHTGSFTDPRGGSTTHYVNTLGDVNNDIIAAIPDHEVME
                     DAILNAMQRHEEYDSSPLPLESLKKKFGPYGNLMDAKRTPYQLKEPMDFRKYQTIAAG
                     PGALQEALRDYMEGVEVEDSSLLVTLKVGNQYSNVANDKDKKPIMGIEVVSKCDKTWL
                     TKKRKAAQKAFDTDSIVIEPSLSKESGHPVSNREAYSDDDEEYSDELTEETGFHGNLR
                     KEQFINELKDYIIIKKEEARQALEVKENEEGHDSEEKILSKHFKTRHIEITKGFSVEQ
                     KIAAVEKLISLLQEKDGAELLNAIDYAALTSSRLGKLVERYDDLILKEYVVPDEYGEK
                     PY"
     gene            complement(2651..3424)
                     /gene="lirA"
                     /locus_tag="JBH85_12480"
     CDS             complement(2651..3424)
                     /gene="lirA"
                     /locus_tag="JBH85_12480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LirA"
                     /protein_id="HAU0947017.1"
                     /translation="MFFSKDEKNPIKRALQGELLQNEPFIQLCTKIENYLMDTEAVNE
                     QLIELNEQLTMRLKEKGLKPGEKGATKQLRTLIQEILTEAGFREGMLQTIGNKPLKKE
                     DFMFLVSSGFMLKDSSLRASSHGELTHAIQWCLIILKQKKDSSFLENIPTSEICDRIY
                     KKLGHQDSSNPNYPFTCWDVLIDKLGEIDSRSPEWLSDHIQNDEDQIFPVLREVIKNR
                     TEKGKTEENKGKLQKKLENPPEHYEKHEEIENILMPKPK"
     gene            complement(3609..>5279)
                     /locus_tag="JBH85_12485"
     CDS             complement(3609..>5279)
                     /locus_tag="JBH85_12485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1959 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947018.1"
                     /translation="YPLLTQNPQTLFSFFANILAKIDSKVCEDISHRKILELTQNTCL
                     AELSRTQNGPPDGLAATQVSNDVTSLMKVNPFNLGVAINKLITENFSKELFFPHYIKP
                     TTDKHITHKLLIPAWDGIVLEGLSVKERKTTNNTVVLALIGHFQTEHHYLNTSFHEFQ
                     ELFGTELVLINHRNYSNRSNKFANSAEEIARDVLAFAKHFRQKNKKIVLYGMCGGAAH
                     MILAAHMLSHQKIPFKLIVDRFSQKYINFVDFKTLSRARDFSHSNGQDCSRLLPGYKY
                     YPGLMPYLLILLFLLLFILVQLGLFLTKTNIDFAKLVRRIPEEDLLILQAKGEKIAAL
                     KKPFFTDIIVHPENDMRAAVKDKRKQRKTILKNLCEHCLHAAGQAVFSAEMQKIFLQL
                     FNCFDQCLQLINNEKLMENTITNRPVDLHSKKLYTLTTRNKLPISQFIRGFFKQSPKM
                     HAHLLDSIKPYSSHLIVDALKQIYGNHPSMHSNLLQFSNHLALLLNDMKTNQFFISYM
                     ADRLSATQLADLNEPINALLRSELLQLIFKSSSEQNNQNIINNHRVSI"
BASE COUNT         1641 a          845 c         1037 g         1756 t
ORIGIN      
        1 caatatcata ttcaactatc aaaacatcaa gaataaaaat ccacatgatt tatttaatga
       61 gctctttaaa aaatttaccg aagacatagg atattctggt atgggttcac gatcaatcga
      121 ggctcttaaa agagcattag ctaaaaataa tatcacttat accaatggat attatggaaa
      181 aacagcgact ttaacaagcc tattatggag taaagagcca cctgttatta ctgatgaaaa
      241 aaatatattt aaattatccg atgaaaagca tttaagtgag aataaggaag atattcgcgg
      301 aaaaggaatt acgaatatct agtccttaca tacccatatt tcgaatttta attggcttac
      361 acaatatcac aagagttggt atcacattta cttttgaatg gtaatatttt caatgactac
      421 aggtgtaatg ggtttatctt gtggatcagt gggcatcttg ctaatcttat caacaacttc
      481 ttgtccagaa atgacttgac caaaaacatt gtagccacct tgtaattcag gtgttggtgc
      541 aacggtaata aaaaattgac tgccattcgt gtttggtcca gcattggcca tggcaagtac
      601 gccaggtttg ttaaaactgg cattagtatt ttcattatca aatgtgtaac ctgggccacc
      661 ggtcccattt ccgagggggt cgccgccctg aatcataaag ccggcaatca cacgatgaaa
      721 ggttaagcca ttgtaaaaag ggcgtttaac cattttgcca gtttttatgt ctttaaattc
      781 ttttgttcca gttgccagcc ctacaaaatt tgcaacggta ttgggagctt cttttgtaaa
      841 taattcacac gttatgttgc cctctgaagt tttaataatt gcagtttctg catgtgctga
      901 catgatacct actgttaaca ctaagttact gagtaaacaa ataatttttt tcatatgaaa
      961 ctctcaatag aatggttaag accagtataa cagtattgta tcgcattaaa atggttttta
     1021 aatgaaactc agagtttcgg ctgaattaga tgggggtgta ctataattaa agaacattga
     1081 attgttatgc gagagtttca tgagcgattc tgaatatgaa agtgattctg aatctgatag
     1141 cgattctaaa tctgaatatg agctccgtac gctaccatcc aaaatacatt ttgtttgggt
     1201 tgggggacct attcgagctc aatatttacg cactattatg gatgttgctg cagtagcact
     1261 aaaaagtggt tttgaggtta atttatgggt tgataatgaa atgaattaca ttaaaacatc
     1321 aactcaagaa ggaatagaca tacctaactt aagaataagg aatgttcatg aattggaaga
     1381 agggatgcga aatgccccct tttacgagga gggagacagg tacaaaaaat tttgggaata
     1441 tgtcaataga gaacgagtcg gttttaaaaa tcttgcggca gccgcagatt tttttcgctt
     1501 cgaaatttta aggcaagagg gcggttatta cttcgatacc gatatcgttt tttatttgga
     1561 tgaaaactca caatttgtag cagatgaggt tgcttttggc ataaaagcgc atgtggattt
     1621 gcatacagga tcattcacgg atccacgtgg aggttctact acccattatg tcaatacttt
     1681 aggagatgtt aataacgata ttattgctgc tattcctgat catgaggtta tggaagatgc
     1741 aattctaaat gctatgcaac gtcatgaaga gtatgattca tccccattgc ccctggaatc
     1801 gcttaaaaaa aaattcggtc catatggcaa tctgatggat gctaaacgca ctccttatca
     1861 attgaaggaa cctatggatt ttagaaaata tcaaactatt gcagctggtc ctggtgcatt
     1921 acaggaggca ttgcgtgatt acatggaagg tgttgaagta gaagattcca gcttgctagt
     1981 taccttaaaa gttggtaatc aatactcgaa tgtagcaaat gataaggata aaaaaccgat
     2041 tatgggaatc gaagtggtca gtaagtgtga taaaacttgg ctgactaaaa aaagaaaagc
     2101 tgcgcaaaaa gcttttgata ctgattcgat tgttatagag ccctcacttt caaaggaatc
     2161 tgggcaccca gtaagtaata gagaggcata ctctgatgat gacgaagagt atagtgatga
     2221 attaacagaa gaaaccggat tccatggcaa tttgcgcaag gaacaattta tcaatgaatt
     2281 gaaagattat attatcataa aaaaagaaga agcaaggcag gctttggaag tgaaagagaa
     2341 tgaagaaggc catgattctg aggaaaaaat tctaagtaag cattttaaaa cacgtcacat
     2401 agagataaca aaagggttct ctgttgaaca gaaaattgct gccgtagaga agcttattag
     2461 tttactgcag gaaaaggatg gggcggaact gcttaatgcg attgattatg cagcgcttac
     2521 cagttctcgc ctgggtaagt tagtcgaaag atacgatgat ttgatactta aagaatatgt
     2581 tgtgcctgat gagtatgggg aaaaaccata ctgaattcaa atggattagt tggtctgtag
     2641 tagttcaaat ttatttgggt tttggcatga gaatattttc aatttcctcg tgtttttcat
     2701 aatgttctgg cggattttcc agtttttttt gtaattttcc cttgttttct tctgttttgc
     2761 ctttttcagt tctgtttttt attacctctc ttaacacagg aaaaatttga tcctcgtcgt
     2821 tttgaatatg atcggaaagc cattccgggg atctggagtc tatttctcct aatttatcga
     2881 taagtacatc ccaacaagta aaaggataat taggattcga agaatcttgg tgccctagtt
     2941 ttttataaat tcggtcacaa atctcactag taggtatgtt ttcaagaaaa ctgctgtctt
     3001 tcttttgttt caatatgatt aaacaccatt gaattgcatg ggtcagctca ccatgggatg
     3061 atgctcttag actgctgtct tttaacataa atcctgatga tactaaaaac atgaagtctt
     3121 ctttttttaa tggcttattc cctattgttt gtaacattcc ctctctaaag ccagcctcgg
     3181 ttagtatttc ctgtatgagt gttcttaact gctttgttgc tcctttttct ccgggtttga
     3241 gtcctttttc ctttaacctc attgtcagtt gttcgtttaa ttcaataagt tgctcgttta
     3301 cagcttcggt atccatcaaa tagttttcta tttttgtaca tagttgtata aagggctcat
     3361 tttgtaataa ttcaccttga agagctcttt ttattggatt tttttcatct ttagagaaaa
     3421 acatatgacc tccaacgcgc taattttttt aagtatagat tatttttaat aaatattgtt
     3481 tataaatatt cgttattgct tacttattgg ttgacttgag tgttgatgag cacatggttt
     3541 aagcgcattt acattaatct tgccatttag tatcaacgat aacccaatta gtggggtcaa
     3601 tgaatgcatt aaatggatac cctatgatta tttatgatat tttgattatt ttgttcagac
     3661 gaactcttga aaattagttg aagtagttcg cttcttaaca gcgcattgat aggttcattt
     3721 aaatcagcta attgagtagc agataaacga tcggccatat aagaaataaa aaactgattg
     3781 gttttcatat catttaaaag caaagccaaa tgattagaaa attgcaataa attagaatgc
     3841 attgatgggt ggtttccata aatttgtttt aaagcatcaa ctataaggtg actagagtat
     3901 ggtttgattg aatcaagcaa atgggcatgc atttttggtg attgtttaaa aaaacctcta
     3961 atgaactgac tgataggtaa cttatttctg gttgtaagcg tgtaaagttt tttactgtgt
     4021 aaatctacag ggcgattagt gatggtattt tccattaatt tctcattgtt tattagctgg
     4081 aggcattgat caaagcagtt aaataattga agaaaaatct tttgcatctc ggctgaaaaa
     4141 acagcttgac cagcagcatg caaacaatgc tcacataaat ttttcaagat ggtttttctc
     4201 tgttttcttt tatcttttac ggctgcccgc atgtcatttt cggggtgtac aatgatgtct
     4261 gtaaagaatg gtttttttaa ggctgctatt ttttctccct tggcttgtaa aatcaggagg
     4321 tcttcttcag gaatcctccg cacaagtttt gcgaaatcaa tatttgtttt tgttaaaaat
     4381 agacctaatt gaactaaaat aaacaacaat aaaaaaagga gaatgagcaa gtatggcatt
     4441 aaaccaggat aatatttgta acctggaagc aatctcgagc aatcttgtcc gtttgagtgt
     4501 gaaaaatctc tggctctcga gagtgtttta aagtctacga aattgatgta tttttgagag
     4561 aacctgtcaa cgattaactt aaatgggatt ttctgatggg atagcatatg ggccgctaaa
     4621 atcatatgcg cagccccgcc acacattcca tacagtacaa tttttttgtt tttttgtctg
     4681 aaatgttttg cgaaagcgag cacatccctg gctatctctt cagcactgtt ggcaaattta
     4741 ttggaccgat tagaataatt tctatgattt ataagcacta attctgtgcc aaaaagttcc
     4801 tggaactcat gaaagctggt attaagataa tgatgttctg tttggaaatg tccaattaac
     4861 gctaaaacaa cggtattgtt tgttgttttt ctttccttaa cagaaagccc ctcaagtaca
     4921 ataccatccc aggctggtat taataattta tgagtaatat gcttgtcggt tgttggcttt
     4981 atgtagtgtg ggaaaaaaag ttccttgcta aaattttccg taatcagctt attgatagcg
     5041 acacctaaat tgaacggatt aactttcatt aaactggtaa catcattaga cacttgtgtt
     5101 gctgccaatc catctggcgg gccattttga gtacgtgata attcagctag gcacgtattc
     5161 tgagtcagtt caaggatttt tcggtgagaa atatcttcac ataccttgct gtcaattttt
     5221 gcaagaatat tggcaaagaa agaaaatagc gtttggggat tctgggttaa taacggata
//
LOCUS       DACVWI010000188         5265 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.188, whole genome shotgun sequence.
ACCESSION   DACVWI010000188 DACVWI010000000
VERSION     DACVWI010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5265
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.188"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            583..1386
                     /locus_tag="JBH85_12490"
     CDS             583..1386
                     /locus_tag="JBH85_12490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947019.1"
                     /translation="MRKSQLRQQVDQYCKHNHTGSFRAKKHRHFVLHKMIRDLYHIGH
                     VPSKWHAVTHDHMVRLVAHWQKEEIKPKTIMKYMTLIRRFFQSIDHTIDNISNQNLGI
                     KCAQLRSKTILFPNNHLEILKNPIAKIVIEFQIYFGLTLSEAMRLNPAIHIQENSLWI
                     TRDIATNSHDRRIPVRNDKQAQANKTLQTLCKEESLILTFGYHSVRGAYSHAIKKIGL
                     SSSRSYRCFYAKSMYPELCQILSPYLAKQTIMREMGLQSRRTLWSYLHE"
     gene            1379..2278
                     /locus_tag="JBH85_12495"
     CDS             1379..2278
                     /locus_tag="JBH85_12495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAU0947020.1"
                     /translation="MSNTKLRSAKFSINELVKKAYNHSYASQSDMRHMLFRCVKDLHE
                     LGYKIGHIKGLKAKHIYVLVEHWKSEGKNTGTIKNYMAKLRKTACLLDNPMLIKPENG
                     AYNIGQRSYVSSINKAIHHIDLSRCTDPYIRLSLEGQMLFGLRREESMKFTLSEAHHG
                     DSLTIKPSWTKGGIGRTLNITNEAQRQWLTKVSQQVKTGESLIPSNRTYKQHLSHYEE
                     QAKIMGVSKLHGLRHAYAQRRYRELTQLFDSKNKGMLCPFEGGKKFQDMNPIEKAMDR
                     KARQMISLELGHSRISITRIYCG"
     gene            2614..2874
                     /locus_tag="JBH85_12500"
     CDS             2614..2874
                     /locus_tag="JBH85_12500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947021.1"
                     /translation="MDDSFFNHLGETSLMWWFSQFLEKIMENVSSTISRKEYVFFDLA
                     CCINEFHALHEELSAQDIEEIKRLSKKLHSLLEDQHPRLNLV"
     gene            2937..3443
                     /locus_tag="JBH85_12505"
     CDS             2937..3443
                     /locus_tag="JBH85_12505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein ArdA"
                     /protein_id="HAU0947022.1"
                     /translation="MDTPQIYVACLAAYNNGILHGEWIDATQDANTIYDEIHEMLAKS
                     PIEDAEEFAIHDFEGFGGAQISEYDSINDVAELASFIMKHGELGAELFSYYSIEDAER
                     MLEENYHGAYDNEVDFARALFDDCYSSTIPEDLLFYFDYEAFARDLFISDYLSVEADG
                     QTHVFSNY"
     gene            complement(3545..4162)
                     /locus_tag="JBH85_12510"
     CDS             complement(3545..4162)
                     /locus_tag="JBH85_12510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947023.1"
                     /translation="MLEDLNAINSGMVEFGCSLLGKSLYDLTFAPMGGECVHPYAYSS
                     LVQALEILMKAAIAEKHPLLIYEKIPKLTSKNDQLNEFFKKARSRSFLDLPDLLALTT
                     NYQIEYNLLEIAWINRCKIIHIGHSFSLDYTYSGLELTFNVIDPFIYKFWNRSSIDET
                     TSFDSETPIYLVEHCLDYNINFKMRKGQIDKDEDIFPRITEQHYY"
     gene            complement(4195..4686)
                     /locus_tag="JBH85_12515"
     CDS             complement(4195..4686)
                     /locus_tag="JBH85_12515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003634962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-diphosphocytidyl-2C-methyl-D-erythritol
                     kinase"
                     /protein_id="HAU0947024.1"
                     /translation="MKQGGSYANSSGGVLEGLVEFALTKKGFTVVRYKDWRLNPSSYS
                     EELLLKNVPYEGLYKHASATEFVLMSKAYNLNTRIECKWQQVSGSVDEKLPYLFLNCS
                     EKMVEPHIIILLDGGGAKPGAIEWLRDACEKFNLKEATTSKRKIDLMSMTEFVQWVNS
                     VFK"
     gene            complement(4697..>5265)
                     /locus_tag="JBH85_12520"
     CDS             complement(4697..>5265)
                     /locus_tag="JBH85_12520"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HAU0947025.1"
                     /translation="NTDSNSQSVYLSLRSEFNSTKDSYLKSALFLYLNRHSFNGLIRY
                     NSSGKFNTAFGDYKQPYFPENEMFTFIQKAEKAEFRCADYKVIMKEAVKGDVIYCDPP
                     YAPLSASANFTKYHSTSFGLEDQRQLVELAKELAAKGVPVIISNHDTTFIQSLYQGSR
                     IVSFDVQRNISCNGSARTRAREVLALFD"
BASE COUNT         1751 a         1010 c          911 g         1593 t
ORIGIN      
        1 atttatccgc agtgacgcag ccgaatggct gcgaaatttt tcaataaatt caatctacta
       61 cttatcattg agcaagcgcg tgcaacgcga ttgctcaaaa taatcattta aaagcccttg
      121 tccaacacga atcgttttgc taatgtgaca ttaagcataa ctgacgagac cggtgcgatt
      181 ccggcgaaac cttaacaggt cttatgcaat agccactctc attctctaat cttgtggcag
      241 aacgataagt cgagaacaaa acaccatctg cacttcgcag aatctattgt aataaaaagc
      301 aatacaattc tttaagaatt gaacctcaca ataccatctc tgtattgccc cgtgcgctac
      361 aatagttcgt agagactttg ttgtatttaa aaccattaaa cctaaggaga tcaccatcat
      421 aaaaaagtag tacctatgta atcaggtcaa tagaagtttg tagtttaaac tgatttgccc
      481 ctgaactgag tcttgaggca ctacgcctgg tactgcaatc ttgcaagccg ctctaccaac
      541 actaaacaaa ataccagggc aaatagtttt agagggttac agatgagaaa aagtcagctc
      601 agacaacaag tagatcagta ttgtaaacac aatcacacgg ggtcattccg cgcgaaaaaa
      661 caccgtcatt ttgtattaca caaaatgatt cgtgatttat atcatattgg ccatgttccc
      721 tccaaatggc atgcagttac tcatgatcat atggtgcgac ttgttgctca ttggcaaaaa
      781 gaagagatca aacccaaaac catcatgaaa tacatgaccc tcattcgtag attttttcaa
      841 agtatcgacc atacaattga taatattagc aaccagaatt tgggaattaa atgcgctcaa
      901 cttcgctcca agacaatcct atttccaaat aatcatttgg aaatactaaa aaatcccatt
      961 gcaaaaatag tgattgaatt tcagatttat tttggattaa cgctgagtga agcaatgcgt
     1021 ctaaatcctg ctatccatat tcaggaaaat tcactttgga ttacaagaga tattgccaca
     1081 aatagccacg acaggaggat tcctgttaga aatgataagc aagctcaagc caataaaaca
     1141 cttcaaacac tatgcaaaga agaaagtttg attttaactt ttggatatca ttctgtacgc
     1201 ggtgcgtaca gccatgcaat aaaaaaaata ggcttgtcat catcaaggag ctaccgctgt
     1261 ttttatgcca agagtatgta tccagaactg tgtcaaatct tgtcccctta cctagcgaaa
     1321 caaacaatca tgcgtgaaat ggggctgcaa tccagacgca cgctttggag ttatctgcat
     1381 gagtaataca aaattgcgtt cggcaaaatt ttcaatcaat gaattggtta aaaaagcata
     1441 taaccactcc tatgccagtc aatcagacat gcgtcacatg ctatttcgat gtgtgaaaga
     1501 tttacatgag cttggctata aaattggtca tataaaagga ttaaaagcaa aacatatcta
     1561 cgtgttagta gaacactgga aatctgaagg gaaaaataca ggaacaatta aaaactatat
     1621 ggccaaacta cgcaaaacag cttgtctatt ggataatccc atgctcatta agccagaaaa
     1681 tggtgcctat aacatcggtc aacgctctta tgtatcttca atcaacaaag caattcatca
     1741 tatcgatcta tccaggtgca ccgatcctta tattagatta tcccttgaag gtcagatgct
     1801 ttttggccta aggcgtgaag aatccatgaa atttacgctt agtgaagcac accatgggga
     1861 tagcttgacg attaaaccaa gttggacaaa aggaggcata ggcagaacat taaacataac
     1921 aaatgaggcg caacgtcaat ggttaacaaa ggtttctcag caggtcaaga ctggggaatc
     1981 gctaataccg tctaatagaa cctataaaca gcacttaagt cattatgaag aacaagcaaa
     2041 aatcatggga gttagtaaac tgcatggctt aagacatgcc tatgcccaaa gacgatatag
     2101 agagctaacc caattatttg attcaaaaaa taaaggaatg ctatgcccat ttgaaggcgg
     2161 gaaaaaattt caggacatga atccaataga aaaagccatg gatagaaaag cacgtcaaat
     2221 gattagcctt gaattaggac actctcgcat atcaataaca aggatctatt gcggatgaaa
     2281 taaatcaaaa cgtgttttat ttttaaataa ataacacgtt ttgattgatt tatttgttgt
     2341 aacagtttag agtactaggt atataacaca actgaagagc cagtgagagc ctggcgaaac
     2401 ctcaataggt cttgtgaaga gccactatca ttccctaatc ttatggcaga acgttaagtc
     2461 gggaacctca gtttcgatca ctgatcaccc accagggtga aaccacatta aaacctcttg
     2521 ttttaaacct gtttatccat tcgcaattgt tcattttgcg aacggctgtt ctttaaaaat
     2581 taggcgaatc aaccagactt gtcgtaatcg agtatggatg actcattttt taatcatctg
     2641 ggagaaactt ccctgatgtg gtggttttcc caatttttgg agaaaatcat ggaaaatgtg
     2701 agttctacta tctcaagaaa ggaatatgta ttttttgatt tagcttgttg tattaatgaa
     2761 tttcatgcct tgcacgaaga gttatcagca caagatatag aggaaattaa acggctaagc
     2821 aaaaaattgc attctctttt agaggatcaa catcctcgac tcaatttagt ttaaccctaa
     2881 gtaggagtgc ttatttctac ttagagagta gcactccttt tacaaggagt cttaaaatgg
     2941 atacacctca aatttatgtt gcatgtcttg cagcttataa caatggcata ctacatggag
     3001 aatggattga tgcaactcaa gatgcaaaca ccatttatga tgaaattcat gaaatgttgg
     3061 ctaaaagccc cattgaggat gcagaggaat ttgcgatcca tgattttgaa ggatttggtg
     3121 gtgcacaaat tagtgagtat gacagcatca atgatgttgc ggagcttgcc tccttcatta
     3181 tgaagcatgg ggagttaggt gctgaacttt ttagctacta ctctattgaa gacgcagaga
     3241 ggatgttaga ggaaaattat cacggagctt atgataatga agttgatttc gcccgtgcgc
     3301 tttttgacga ctgctacagc agtacaatac cggaggattt gctattttat tttgattatg
     3361 aagcttttgc gcgtgatcta tttataagcg attatctttc ggtagaagca gatggtcaaa
     3421 cgcatgtttt ttctaattac taagcccctt ctttggggct ttttatttga tgtctgtaga
     3481 atgatattga ccgctatggc tttctcaata atacctttac acaatattat tcaacactgt
     3541 ccatttaata atagtgctgc tctgtaattc tcggaaaaat atcttcatct ttatcaattt
     3601 gtccctttct cattttaaaa ttgatattgt aatcaagaca gtgctctact aaataaattg
     3661 gagtttctga atcaaatgag gtagtttcat caatcgaact tctattccaa aatttataaa
     3721 taaaaggatc aataacgtta aaggttaatt ctaatccaga gtaagtgtaa tccaaactaa
     3781 aactgtgccc aatatgtatt attttacacc tattaatcca tgctatttct agcaagttat
     3841 attcaatttg gtaattggtt gtcaaagcta aaagatctgg aagatctaaa aaactacggg
     3901 atcgggcttt cttaaaaaac tcattcaatt gatcattttt cgacgttaat tttggtattt
     3961 tttcataaat taataatggg tgcttctccg caatagctgc tttcattaaa atttctaatg
     4021 cttgcacaag acttgaataa gcataagggt gaacacattc acctcccatt ggagcaaaag
     4081 ttaagtcata taaacttttt cctaatagtg aacaaccaaa ctctaccatt ccactattaa
     4141 ttgcatttag atcttccaac ataatattcc caccatgctc cccaaataat gatgttattt
     4201 aaaaactgaa ttaacccatt gaacaaactc agtcatactc attaaatcga tcttgcgctt
     4261 agaggttgtg gcttctttta gattaaattt ttcgcatgca tcacggagcc attctattgc
     4321 tccaggtttt gcaccacctc cgtctagcaa aataataatg tgtggttcaa ccattttttc
     4381 agaacagttt aaaaataaat atggaagttt ttcgtctaca cttccagaaa cttgttgcca
     4441 tttacattca attctagtgt ttagattgta ggcttttgac attaagacaa attctgtagc
     4501 actagcatgc ttataaagcc cctcatatgg aacatttttt aataataact cctcactata
     4561 actcgatggg tttaatctcc aatctttata ccgaacaaca gtaaatcctt tttttgtaag
     4621 ggcaaattct actaatcctt ccagaacccc tccactactg tttgcatatg agccaccttg
     4681 tttcataaca ttgcccctaa tcaaataaag caagtacctc tctcgctcgt gttcttgcgc
     4741 tgccgttaca acttatatta cgctgcacat caaaactgac gatacgtgat ccttgatata
     4801 agctctgaat aaaagtcgta tcatgattgg atataatcac aggaactccc ttagcagcta
     4861 gttctttagc taactcaact aactgcctct gatcttctag cccaaaacta gttgaatgat
     4921 attttgtaaa attagctgat gcagataatg gagcatatgg aggatcacaa taaataacat
     4981 ctcccttaac agcctctttc ataatcacct tatagtcagc acatctaaat tctgcttttt
     5041 ccgctttttg aataaaagta aacatttcat tttccggaaa atagggttgt ttataatctc
     5101 caaaagctgt attaaattta ccagagctgt tatatcgaat taatccatta aaagaatgac
     5161 gattgagata gagaaataat gcagacttta agtaactatc cttcgttgaa ttaaattctg
     5221 aacgtaatga taaatacaca gattgcgaat tagagtccgt attaa
//
LOCUS       DACVWI010000189         5237 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.189, whole genome shotgun sequence.
ACCESSION   DACVWI010000189 DACVWI010000000
VERSION     DACVWI010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5237
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.189"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(28..537)
                     /locus_tag="JBH85_12525"
     CDS             complement(28..537)
                     /locus_tag="JBH85_12525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HAU0947026.1"
                     /translation="MESNNTQQSIKIHSSVIVLHDLSKDSLILTRRSQMLKKHPGEVC
                     FPGGFQEINDQDLYSTALRELNEELGVTSDRITLIRKLNIEKTLLGLVIHPWYASIDS
                     IFPYTMNPQEVSELILVPMPLVKNQKNYKEIRIEKEGKHIVTCQFIANEELIWGATAR
                     IMRQLASQY"
     gene            complement(524..1846)
                     /gene="pabB"
                     /locus_tag="JBH85_12530"
     CDS             complement(524..1846)
                     /gene="pabB"
                     /locus_tag="JBH85_12530"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HAU0947027.1"
                     /translation="MIDSTLITLDYHDFSSESYEKFSRLPGFVLLQSTDKSTGRYDIL
                     SAYPYERMVIENNVHDKDLVLTELKNKLKIEESEFDLPFQGGAIGYVSYDFGSLLHNH
                     EQYSQKDLAHIPVLNFGFYDWAIIVDHHLKKATLFARNSHSSTKSVVDKIKNILNDQP
                     MKSVQFSVQAEFLPLISKENYRSSFNAIQQALRAGRSYQVNFTQPFQTKFTGDLWDMY
                     QRVNKNNPVPYAAFIRTEEADILSFSPERFLLYDNGEMLTSPIKGTIHRSKDPVVDKK
                     LKEQLLKCPKNKAENVMIVDLLRNDLGKLAKAGSVKVMNLCHIQSFNAVHHLVSDIRA
                     LCKEDIHPIEAFFSCFPGGSITGAPKLETMKIISEQETYKRGVYCGCIAYFSQHGRFD
                     ANIAIRTVTAKDNVLYLAAGGGIVIDSDWEDEYRECFTKITAIINGIK"
     gene            2005..3099
                     /gene="pdhA"
                     /locus_tag="JBH85_12535"
     CDS             2005..3099
                     /gene="pdhA"
                     /locus_tag="JBH85_12535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HAU0947028.1"
                     /translation="MLTRSHVMTTVAQFEITYTQYLNEQGKLVAELPPFADNQSILKE
                     LYKIMVLTRTFDKKAIALQRTGKMGTYAPINGQEAISTAIGHALKPEDVLVPYYRDYA
                     AQFQRGVKMSEILAFWGGDERGSHYSNNAEDLPICVPIASQCLHAAGVAFAFKYRNQP
                     RVAVVCIGEGGTSEGDFYEAMNVAGAWKLPVVFVVNNNKWAISVPIEKQTGSQTIAQK
                     AIAAGFSGVQIDGNDIFAARQVIGDAIEKARQGGGPTLIEALTYRLCDHTTADDATRY
                     QPSHEVEEAKAKEPIVRFKHYLMQQNIWTSQDEEKLVIECSETVEKAVEEYLNTKPQP
                     VSSIFDYHYAELPEYLIEQRAIAMEEYSHA"
     gene            3092..4066
                     /locus_tag="JBH85_12540"
     CDS             3092..4066
                     /locus_tag="JBH85_12540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HAU0947029.1"
                     /translation="MPDITLVEAVTQALAYELAHDENVVVFGEDVGKNGGVFRATVGL
                     QDRFGENRVFDTPLAESMIAGLAVGMSIQGLKPVAEFQFMGFIYPAMNQIISHAARMR
                     NRTRGRLHCPLVYRAPFGGGIRAPEHHSESTEALFAHIPGLQVVIPSSPKRAYGLLLA
                     AIRNPDPVIFLEPKRIYRLVKQPVPDDGQALPLGKCFTLQQGDDLTLISWGASMHETL
                     QAAKQLTDEGISCDVIDVATIKPLDIETILSSVEKTGRCVIVHEGAKTCGVGAEISAQ
                     IMEHCMADLLAPVQRVTGYDTVMPYFQLEKQYIPSIARIKNTVMSIME"
     gene            4069..5181
                     /locus_tag="JBH85_12545"
     CDS             4069..5181
                     /locus_tag="JBH85_12545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HAU0947030.1"
                     /translation="MNIFNLPDLGEGLPDAEIHEWFVKEGDTVKADQPLVSMETAKAV
                     VDVPCPQSGTIAKLYGKPGDVIKTGEPLVAFVSTTEKPADKGTVVGNLEESTDVSEDN
                     FIIGSQRSSHRVKTTPAVRLLAKKLGVDLSSLKGSGDNGVITREDVQNQANINSQPPA
                     GFEHLRGVRRAMLNSMVQSHAEIVPVSIFDEADIHIWKPNTDITVRLIRAIIHASKKE
                     PALNAWFDTKHAARRCFKEVHLGIAMDNEEGLFVPVIHDAEKYSDSELRKIIDEFKES
                     VRNRAVSADKLKGATITLSNFGKFSGRFASPIIVPPMVAILAVGRLYKAAVINDEDKI
                     EAHKMLPLSLSFDHRAITGGEATRFLGAVIESLQQA"
BASE COUNT         1594 a          958 c         1063 g         1622 t
ORIGIN      
        1 atgcctttta tcatcctggt ataatactta atattgagaa gctaattgcc tcataattct
       61 tgctgtggca ccccatatta attcttcatt agcaataaat tggcaggtga caatgtgttt
      121 tccctctttc tcaattctaa tttctttata atttttctga ttttttacta aaggcatagg
      181 cacaagaatt aattcactaa cctcttgtgg attcatagtg taaggaaata tagaatcaat
      241 actggcgtac caagggtgaa tgactaaacc cagtaaagtc ttttcaatgt ttaattttct
      301 gatcagagtt attctgtctg atgtaacacc tagctcttca ttaagttctc tcaatgcagt
      361 gctatataga tcttgatcat ttatttcttg aaaaccacca ggaaagcaca cttctcctgg
      421 atgtttttta agcatctgac ttcgcctggt gagaattaac gagtctttgg aaagatcatg
      481 taaaacgata actgatgaat gtattttgat tgactgttgg gtattatttg attccattga
      541 taattgcagt aatttttgtg aaacattcac gatattcatc ttcccaatcg gagtcaataa
      601 ctattccccc tcctgctgcc aaatataaaa cattatcttt ggctgtcacc gtacgtatcg
      661 cgatattggc atcgaaacgg ccatgttgtg aaaaataggc tatgcaaccg caatagaccc
      721 ctcttttata ggtttcctgt tcactgataa ttttcatcgt ctctaattta ggcgccccgg
      781 taattgaacc acctggaaaa caggagaaaa atgcttcaat tggatgaata tcctctttgc
      841 atagagctct tatgtcggaa accaaatgat gtactgcatt gaagctctgg atgtggcaaa
      901 gattcattac ctttacactg ccagccttgg caagtttccc tagatcgttt cttagcaaat
      961 cgacaatcat gacattttca gccttgtttt tagggcattt caataactgt tcttttaatt
     1021 ttttatctac aacaggatct ttcgatcggt ggatagtgcc ttttatgggc gaagttaaca
     1081 tttcaccgtt gtcataaagt aaaaatcgct caggagaaaa gctcaatatg tcagcttcct
     1141 cagttctgat aaaagcagca taggggacag ggttattttt gttaaccctt tggtacatat
     1201 cccagagatc cccggtgaat tttgtttgaa acggttgcgt gaaattaacc tgataagagc
     1261 gtcctgctct cagggcttgt tgaatggcat tgaatgagct cctgtagttc tcttttgata
     1321 ttaaaggcaa aaattcagct tgaactgaaa attgtaccga tttcatgggt tgatcattca
     1381 atatattctt tattttatct acaacgcttt ttgttgaaga atggctattt ctcgcaaata
     1441 aagtggcctt ttttaaatgg tgatcaacta tgatagccca atcataaaat ccgaaattta
     1501 aaacaggtat atgcgccaga tctttttgtg aatattgttc atgattatgt aagagtgaac
     1561 caaagtcgta agaaacgtag cctatggccc cgccctgaaa aggaagatca aattctgact
     1621 cctctatttt tagtttattt tttaattctg ttaatactaa atctttatca tgtacattat
     1681 tctcaataac catcctctca tatggataag cacttaaaat atcataacgc cccgttgact
     1741 tgtctgtact ctgaagcagg acaaatccag gtaaacgact gaatttttca taggattcag
     1801 atgaaaaatc atggtagtca agtgtaataa gagtactatc aatcaaatta tcacctcaag
     1861 ataaggatgt gctgtgaaaa aatgcagtgt ttttcatttg gtcattttaa cctaacttat
     1921 caataaaaaa cgtatatttt tatcttgggt tcctattaat ttactggttt ttaaattaat
     1981 ttgtgagtat cctatgccaa cgcgttgttg acaaggagcc atgtaatgac aactgttgct
     2041 caatttgaaa taacatacac acaatacctg aatgaacaag gtaagttggt cgctgaatta
     2101 cctccattcg cagataatca atccatactt aaagaattgt ataaaatcat ggtactcacc
     2161 cgtacttttg ataaaaaagc aattgcatta caaagaacag ggaaaatggg aacctatgcg
     2221 ccaattaatg gccaggaagc tatttcgact gcaattgggc atgctcttaa acctgaagat
     2281 gtacttgtac cttattacag agattatgcc gctcaatttc agagaggcgt taaaatgtca
     2341 gagatactcg ccttttgggg aggggatgag cgaggaagtc attattctaa taatgccgaa
     2401 gatttgccta tttgtgtccc aattgcatct caatgtttgc atgccgcagg agtcgcattt
     2461 gccttcaaat acagaaacca accaagagta gctgtggtat gtattggaga aggaggcact
     2521 tcagaaggtg atttttacga agccatgaat gtggctgggg catggaaatt accagtggtc
     2581 ttcgtagtaa ataataacaa atgggcgatt tctgtgccta tagagaaaca aactggctca
     2641 caaacaatag cccaaaaagc gattgctgct ggtttttctg gcgttcaaat agacggtaat
     2701 gatatttttg ctgcaagaca ggttataggg gatgctattg aaaaggctcg tcaaggtggt
     2761 ggacctactc taatcgaagc cttaacctat cgcttgtgcg accatacaac ggctgatgat
     2821 gcaacacgct atcagccttc tcatgaagta gaggaggcaa aagccaaaga gcctattgtt
     2881 cgttttaaac actatttaat gcaacaaaat atttggacat ctcaggatga agaaaagctg
     2941 gttatagaat gcagtgaaac ggtggaaaaa gcagtagagg aatatttgaa taccaaacct
     3001 cagcctgtta gcagcatttt tgattatcat tacgcagaat taccagaata tttaattgaa
     3061 caacgcgcaa tagccatgga ggagtattct catgcctgat attactttag ttgaagctgt
     3121 tactcaggct ttggcgtatg agttagctca tgatgaaaat gtagtagtct ttggcgaaga
     3181 tgttggtaaa aatggtggag tatttcgagc tactgtaggt ttacaagaca gattcggaga
     3241 aaatagagtt tttgatactc cattagcaga atcgatgata gcaggcctgg ctgttggaat
     3301 gtccattcaa ggcttaaaac ctgttgctga atttcaattc atgggtttta tttatccagc
     3361 catgaatcag atcatatctc atgcagcgcg tatgcgtaac agaaccagag gtcgcttaca
     3421 ttgccctttg gtttatcgtg ctccgtttgg tggtggaatc agagcaccgg agcatcattc
     3481 tgaaagtaca gaagcattat ttgctcatat tccgggtttg caagtggtta ttccctcttc
     3541 tccaaaacgt gcttatggtc tgttgttggc cgctatacgt aaccctgatc ccgttatctt
     3601 tcttgaacca aaacgaattt atcgcttggt caaacaacct gttccagatg atggacaagc
     3661 cttaccgtta ggtaaatgtt ttaccctgca acagggagat gatctgacat taattagctg
     3721 gggagccagt atgcatgaaa ccttacaggc agccaaacaa ttaactgatg aaggtatttc
     3781 ctgtgatgtt attgatgtag caacaatcaa gcctctggat atagaaacta ttttaagttc
     3841 tgtagaaaaa acaggacgtt gcgtcatagt gcatgaagga gcaaaaactt gtggagtggg
     3901 tgctgaaata tcggctcaaa ttatggaaca ttgtatggca gatttactag ctcctgtgca
     3961 aagagttacg ggatatgata cggttatgcc ttatttccaa cttgaaaaac agtacatacc
     4021 tagcattgca cgtattaaaa acactgttat gagtataatg gagtaataat gaatattttt
     4081 aatctacccg atttaggtga aggtttacct gacgctgaaa ttcatgaatg gtttgttaag
     4141 gaaggcgaca cagttaaagc agatcaacct ttagtttcta tggaaacggc aaaagcagtt
     4201 gttgacgtac cctgccctca atcaggcact atcgcaaaac tttatggcaa accaggtgat
     4261 gttatcaaaa caggtgagcc tcttgtagcg tttgtttcaa ctaccgaaaa acctgcagat
     4321 aagggcacag ttgttggtaa tctggaggaa agtactgatg tgtcagaaga taattttatt
     4381 attggaagtc agcgttcttc tcaccgcgtt aagacaacac ctgctgtaag attgttagca
     4441 aaaaaattag gagttgattt aagctcttta aaaggtagtg gtgacaatgg tgttattact
     4501 cgagaagatg ttcaaaatca ggccaatatc aattcacaac cacctgccgg gtttgagcac
     4561 ttgcgaggtg ttagacgagc catgcttaat agcatggtac aatctcatgc agaaatagtt
     4621 ccagtcagta tttttgatga agcagatatc catatttgga aacccaacac agacattact
     4681 gttcgtttaa tccgggctat tatccatgcc tcaaaaaagg aacctgctct taatgcctgg
     4741 tttgatacca aacatgccgc acgtagatgc tttaaagaag tgcatcttgg cattgccatg
     4801 gacaatgagg aaggtttgtt tgttcctgtt atccatgatg cagaaaaata ctccgacagt
     4861 gaattaagaa aaataattga tgaattcaaa gagtcagttc gtaatcgggc ggttagtgca
     4921 gacaagctaa aaggggcgac aattacgttg tctaattttg gaaaattttc aggacgtttt
     4981 gccagtccaa taattgttcc tccaatggta gcgattttag cagttggaag actttataaa
     5041 gccgcagtaa ttaatgatga ggataaaatt gaagcccaca aaatgcttcc tttatccttg
     5101 agctttgatc atagagctat taccggagga gaagccactc gatttttagg tgctgttatt
     5161 gaatctttgc aacaagcatg attttaattt atgttgggct tcgtaaatag cgaggcctaa
     5221 caacaaatac tattact
//
LOCUS       DACVWI010000190         5227 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.190, whole genome shotgun sequence.
ACCESSION   DACVWI010000190 DACVWI010000000
VERSION     DACVWI010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5227
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.190"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(61..912)
                     /locus_tag="JBH85_12550"
     CDS             complement(61..912)
                     /locus_tag="JBH85_12550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0947031.1"
                     /translation="MAMNTKVILITGCSSGIGFDAVFALKNRGHRVIASCRKTEDVQK
                     LLNKGVEALLLDVSNPISIQSAFAQLLIMTSGHLDVLINNAGYGQVGALEDISRDILR
                     QQFETNVFGLQDLTNLVIPVMREQGQGRIINISSILGVVSMPFRGAYNASKYALEGLS
                     DTLRLELSGSGINVITIEPGPINSRFRDNAVDLSLQQIPMEKSYFKNQYRNMLSNFKQ
                     KKADSFFTRDTDAVIKKLVHAVESRKPKPKYPVTFPAYFLIGLKRFFTTRLLDRFILF
                     LSRKELG"
     gene            1066..2574
                     /gene="ravZ"
                     /locus_tag="JBH85_12555"
     CDS             1066..2574
                     /gene="ravZ"
                     /locus_tag="JBH85_12555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavZ"
                     /protein_id="HAU0947032.1"
                     /translation="MKGKLTGKDKLIVDEFEELGEQESDIDEFDLLEGDEKLPGDSEL
                     DKTTSIYPPETSWEVNKGMNSSRLHKLYSLFFDKSSAFYLGDDVSVLEDKPLTGAYGF
                     QSKKNDQQIFLFRPDSDYVAGYHVDAKSDAGWVNDKLDRRLSEISEFCSKATQPATFI
                     LPFVEMPTDITKGVQHQVLLTISYDPKSKQLTPTVYDSIGRDTYSESLSSYFKGKYRT
                     TCDEILTQSIEKAIKSTDFTLGKFTRAAYNHQNRLTEGNCGSYTFRTIKEVISSSAQG
                     TEVKIPGSGYITSNSYLTSQHVQDIESCIKYRNLGVVDIESALTEGKTLPVQLSEFIV
                     ALEDYGKLRSQQSEKSMLNFIGYSKTAKLTAVELLIGILNDIKGKNEISESQYDKLVK
                     EVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFDDTIDDFVTIEKDELFDVPDIT
                     GEELASKKGIEQGALDKEALLKQKQIKTDLLDLREEDKTGLKKPLHGGIKVK"
     gene            2878..4275
                     /locus_tag="JBH85_12560"
     CDS             2878..4275
                     /locus_tag="JBH85_12560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1684 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947033.1"
                     /translation="MKSVDEIDSLLQSAKTSEKDSSEQIVPPNDEIEDGFYLIDDSNH
                     DEDLDFSDFPWLDPDHPLFFPATQANNSKGSTRWDAVNKFSVENWYPHLRKHTFKSHF
                     ITLNYNDIHYLMGNIPPDYDSSKLESIFNKILSEFNNKEVFMRLSTRSPKDSKFLFEE
                     ASTIMSKDFVYWNENDNKHQQLVSFVASMLKAMKIKSGRKIIETIAQSPRVYNDLLAL
                     VSSSNQSDCTTNVILREWHDIRPDHEFRVFVSRRHRKESIVTAISQYFHFLYFDKSPA
                     DCFNFLDEEDKKAVIKKFENYVLKSVDPDVAKFLNFSSEQDDDESSDCIREYIVDLAL
                     IPVSQYHGEITDENIIEIGANTYVMVVIELNPFAPAATGSGLFNWKNDLMMLWGKASC
                     DYPVFKYRTTPREDLQSVSLLPSNYESVIKSALIKRLETSYSNSASQKERFFSSTKPV
                     TESSGSALLDMVTKP"
     gene            complement(4286..5155)
                     /locus_tag="JBH85_12565"
     CDS             complement(4286..5155)
                     /locus_tag="JBH85_12565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1685 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947034.1"
                     /translation="MQCAIERKNSLRDLQSQPNLGDWMFISSLGSQDFDERKFFSQIS
                     LQSLSFIIRIAKFSAYFAALCEKSEYDELWKKLYSTFGLVLTRDKPVPKSFFTHDGGE
                     INHFNLLRGAYYFHLSQKALAAKEKSFSDSELYWLNQAMKFGSIHASQRYIQFLYQKL
                     DKVASADEAEQILTEAIKLCKANLNQYGSYAYMMLAEAFFRYAMWAQQSGNINRAKSA
                     ITSSINSCTKANQHLRASASSIHNASLGEGLKASNTLAMESPEEAIAFLNAWAVAHLY
                     KHEIELVSRPGFY"
BASE COUNT         1740 a          927 c          953 g         1607 t
ORIGIN      
        1 gtagttgcta attatcaaca tcaacttatg actattttat aatattacca ataagttgct
       61 ttaacccagc tccttcctgg ataaaaataa aataaaccta tctaataaac gtgtagtaaa
      121 gaatcgtttt aaaccaatta aaaaataagc tggaaaagtt acagggtact tgggttttgg
      181 tttccttgac tccacggcat gaaccagttt ttttatcact gcatcagtat cccgagtgaa
      241 aaacgagtct gccttcttct gtttaaaatt gctcagcata tttctgtatt gattcttgaa
      301 ataacttttt tccattggta tttgttgtaa agataagtcc accgcattat cacgaaatcg
      361 gctatttata gggccaggct ctattgttat gacattaata cctgaaccag acaattccag
      421 tcgaagtgtg tcacttaagc cctccaatgc atatttggag gcattataag caccgcgaaa
      481 tggcatgcta actacgccaa gtatagagct gatattgatt atgcgtcctt gtccttgttc
      541 cctcattaca ggaataacca aattggtcaa atcttgcaaa ccaaatacgt tcgtttcaaa
      601 ttgttggcga agaatatccc gagaaatatc ctcaagagca cctacctgac cgtatcctgc
      661 attattaatc aatacatcca ggtgacccga cgtcataatt aacaactgcg caaatgcact
      721 ttggattgaa atagggttac ttacatccaa caagagagcc tcaacccctt tatttagtaa
      781 tttttggaca tcctctgttt ttctgcagga tgcaatcact ctatgtcctc tatttttcaa
      841 agcaaaaaca gcatcaaaac ctatcccact ggagcatcct gtgatcaaaa taacttttgt
      901 attcatcgcc atgacctatg cctaattttt aactatcgta ctaagctatc tatcgaatta
      961 ccactattat gataattatt tgttcaattt ttgacttata tttcactttt tcctaaaaat
     1021 catttgctaa acttttaata tggaaatgac agtttagagg tcaaaatgaa aggcaagtta
     1081 acaggtaaag acaaattaat agtggatgag tttgaagaac tgggagaaca ggaatccgat
     1141 atcgatgaat ttgatcttct tgaaggtgat gagaaattgc ctggcgactc agagcttgac
     1201 aaaactacat ctatttatcc tcccgaaacc agctgggaag tgaataaagg gatgaacagt
     1261 tctcgtttgc ataaactata cagtttattc tttgacaaaa gttccgcctt ttatcttggc
     1321 gatgatgtta gtgtattgga agacaagcct ttaacaggtg cctatggttt tcagagtaaa
     1381 aaaaatgatc aacaaatttt tttattcaga ccggattctg attatgttgc aggatatcac
     1441 gttgatgcaa aatcagacgc tggatgggta aatgacaaac tcgatcgtcg tttatctgag
     1501 attagtgaat tttgtagtaa ggccactcaa cctgcaacgt ttatacttcc ttttgttgaa
     1561 atgcccactg acattaccaa aggggttcaa caccaggtat tgttaactat tagctacgat
     1621 ccaaaaagta aacaactcac tcccactgtc tatgactcca ttggacgaga tacctactct
     1681 gaatcgttat catcctattt taaaggcaaa tatagaacaa cttgcgatga aattttgacc
     1741 caaagtattg aaaaagctat taagagcact gattttactc ttggtaaatt tacacgagct
     1801 gcttataacc atcaaaaccg cctcaccgaa ggcaattgcg ggtcttatac cttcaggacg
     1861 attaaagagg ttatttcatc ctcagcacaa ggtactgaag taaaaattcc tggctcagga
     1921 tatattactt ctaacagtta tttaacaagt cagcacgtac aagacattga aagttgcatt
     1981 aaatatagaa atttgggggt tgttgatatc gaaagtgctt tgactgaagg taaaacatta
     2041 ccggtacagc tttctgaatt tattgttgcc ttggaagatt atgggaaatt acgaagtcaa
     2101 caatctgaaa aaagcatgtt gaattttatt ggctacagca agacagcaaa attgaccgct
     2161 gttgagctgc taataggcat tttaaatgat atcaaaggca aaaatgaaat cagtgaatct
     2221 caatatgata aattagtaaa ggaagtcgat tgtttaatgg attcatcttt aggaaagttg
     2281 gtacaatttc accttaaaaa tttaggcgct gaatcactac aaaaactggt acttccgtgt
     2341 gtcaagtttg atgatacgat agatgatttt gtgactatcg aaaaagacga actattcgat
     2401 gtacccgata ttacagggga agagcttgcc tctaaaaaag ggattgagca aggtgctctg
     2461 gataaagagg ctttactaaa acaaaaacag attaaaacgg atttgttaga ccttcgcgaa
     2521 gaagataaaa ccggtctgaa aaaaccattg catggtggca ttaaggtaaa atagtgtgaa
     2581 ttgaattcaa ctatgtgatt aataggcaga aggtttttta atgcgctgat aatttcttaa
     2641 actttaaaaa ataagcgagc catgctgtca tcaattattg aatttaagtt gaataattaa
     2701 tcatttcatt attaagttct tacataatca ttaaatttaa ttcatggtgg ctcggtattt
     2761 ggcaattaca acggaaagtg ttagaattaa ttggccatat tgtatcctaa taagtcatgt
     2821 tattggatta tggtgtgaat attaaattta caaagcgttg ggtggagtgc ggtaaacatg
     2881 aaatctgttg atgaaataga ctctcttttg cagtcagcca aaacaagtga aaaagacagt
     2941 tcagagcaaa ttgttccacc aaatgatgag attgaagatg gattttatct catagatgat
     3001 agtaaccatg atgaagacct tgactttagt gattttccat ggctggatcc tgaccatcca
     3061 ttattttttc cggcaacaca ggcaaataat tcgaaaggat cgacacgatg ggatgcggta
     3121 aataaatttt ctgtagaaaa ttggtatcct catttaagaa aacatacctt caagtcacac
     3181 tttattacac taaactataa tgatattcac tatttaatgg gaaacattcc tccagactac
     3241 gatagcagta aactggaaag tattttcaat aaaatccttt cagaatttaa caataaagaa
     3301 gtcttcatga gattgtccac caggagcccc aaggattcca aatttctctt tgaagaagct
     3361 tctaccataa tgagtaagga ttttgtgtat tggaatgaaa atgacaataa acatcagcaa
     3421 ttggtgtcat ttgttgcttc aatgctcaag gcaatgaaaa ttaaaagtgg tagaaaaata
     3481 attgaaacaa tagcacaaag ccctagagtt tataatgatt tgcttgcgct cgttagttca
     3541 agcaatcaat cagattgtac gacaaacgtt attttgcgcg aatggcatga cattcgtcca
     3601 gaccatgagt ttagagtttt tgtatccaga cgccatcgta aagaaagtat tgttacagcg
     3661 atatcacaat attttcattt tttatatttt gataaaagcc ctgcagattg tttcaatttt
     3721 ctagatgaag aggataagaa agctgttatt aaaaaatttg aaaattatgt tctcaaatct
     3781 gtagatccag atgttgcaaa atttttaaat ttttcaagcg aacaagatga tgacgaatca
     3841 tcagattgca ttcgtgaata cattgttgat ttagccttga ttccagtcag tcaatatcac
     3901 ggcgaaataa cagatgagaa cataattgaa ataggggcaa atacttatgt aatggtagtc
     3961 atagagctga atccatttgc accagcagca acaggaagtg gtttattcaa ttggaaaaat
     4021 gacttaatga tgctttgggg gaaagcatcc tgtgactatc ccgtctttaa gtatcgtaca
     4081 acaccaagag aagatttaca gtcagtatca ttgctgccgt caaattatga gtctgttatc
     4141 aaaagtgcct tgatcaaacg attggaaacc tcctactcaa actcagcaag tcaaaaagaa
     4201 agattttttt catccactaa acctgttact gaatcctctg gatcagccct gcttgatatg
     4261 gttacaaaac cgtgataggc aagatttagt aaaaacctgg gcgggagacc aattctattt
     4321 catgtttgta aaggtgcgcg actgcccaag catttaaaaa agcgatggct tcctctgggc
     4381 tttccatagc aagtgtattg ctggctttca acccctcccc caagcttgca ttatgaatgg
     4441 aggaggcact ggcacgcagg tgttgattag cttttgtgca ggaattaatt gacgaggtaa
     4501 ttgcagattt agcacgattt atattaccgg attgttgtgc ccacatcgca taacgaaaaa
     4561 aagcttcagc tagcatcata taagcataac tgccatattg atttaagttt gccttacaaa
     4621 gcttaattgc ctccgttaaa atttgttctg cttcatctgc agaagcaacc ttatctaatt
     4681 tttgatataa aaattggata taacgctggc ttgcatggat cgacccaaat ttcattgcct
     4741 gatttaacca gtagagctct gagtcagaaa aggacttttc ttttgctgct aatgcttttt
     4801 gggaaagatg aaaataataa gcgccacgta gtagattaaa atgattgatt tctccaccgt
     4861 catgagtaaa aaaagattta ggtactggtt tatctctggt gagaactaat ccaaaagtcg
     4921 agtagagctt tttccaaagc tcatcatatt cacttttctc acaaagcgca gcaaaataag
     4981 cagaaaattt agctattctg ataataaaag acagtgattg caatgaaatt tgagagaaaa
     5041 actttctctc atcaaaatct tggctcccta aagaggagat aaacatccaa tcaccaagat
     5101 ttggctgtga ttgcaaatca cgtaaactat tttttctctc gatagcacat tgcaattttt
     5161 taagccctca acatctttgc caaataacaa gcatggcaat atattaacat attgtacata
     5221 atattgc
//
LOCUS       DACVWI010000191         5223 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.191, whole genome shotgun sequence.
ACCESSION   DACVWI010000191 DACVWI010000000
VERSION     DACVWI010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5223
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.191"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            24..662
                     /locus_tag="JBH85_12570"
     CDS             24..662
                     /locus_tag="JBH85_12570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HAU0947035.1"
                     /translation="MFIVLIKTIDFIYLAVSPKFNNENGVNLMRRKLMITVGNKFPEF
                     QLKATVANDVSNAFQMISNETYRGKWLVVFFWPKDFTFVCPTEIAEFGRLNSEFADRD
                     AQILGGSTDSEFVHLAWRNQHPDLNNLPFPMLADVKRELTANLGILDDEEGVAQRATF
                     IVDPQGITRFVMVTDLNVGRNPAEVLRVLDALQTDELCPCNWKKGEETIHIK"
     gene            685..1200
                     /locus_tag="JBH85_12575"
     CDS             685..1200
                     /locus_tag="JBH85_12575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096358.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase"
                     /protein_id="HAU0947036.1"
                     /translation="MLENVKESIPEVAKDIRLNLTKVLDLEQSDGLSEHQILGSALAV
                     SYSLGNEVLIKGLKELVHNEQIVRAAQLAASLMAMTNIYYRFVHLTEIKEIEHIPAGL
                     RMQGMMTPGVDRVTFEILSLAVSALNGCGACVSSHARQLKEHGLSDTSLARVGRITAV
                     IHAVHVSGRIK"
     gene            complement(1244..1732)
                     /locus_tag="JBH85_12580"
     CDS             complement(1244..1732)
                     /locus_tag="JBH85_12580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn]"
                     /protein_id="HAU0947037.1"
                     /translation="MNKSGIILIGTILFSSMAIADDLTAPIYTTGPKPVAIGKVTFTQ
                     TPYGVLITPDLTNLPEGPHGFHLHKTADCGNHGMHAEGHYDPQNTNSHQGPYGNGHLG
                     DLPVLYVTSNGKAMIPTLAPRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGV
                     IK"
     gene            1683..1835
                     /locus_tag="JBH85_12585"
     CDS             1683..1835
                     /locus_tag="JBH85_12585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HAU0947038.1"
                     /translation="MLENKIVPINIIPDLFMSFPGIFQSPLIFLVLSKKNIYSTGFKK
                     KSIFWG"
     gene            2037..4061
                     /locus_tag="JBH85_12590"
     CDS             2037..4061
                     /locus_tag="JBH85_12590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
                     /protein_id="HAU0947039.1"
                     /translation="MELRIDNTPFKAIFQPLDLGFTQIKNRLLMGSMHTGLEEDKENL
                     NRLASFYRERAQGGVGLIVTGGFAPNRAGRLAPFAAKLTNSKEQHRHEVITQAVHEAG
                     GKIALQILHAGRYGYHPFIVAPSGIKSPISPFKPWEMSKRRIIKTIKHFARCARLAQL
                     AGYDGVEIMGSEGYLINQFIVTHTNHRRDEWGGSFSNRIRFPIEIVRSVREAVGEHFI
                     IIYRLSMLDLVAEGSNWQEVVTLAKAIEQAGASLINTGIGWHEARIPTIGTMVPSAAF
                     TPVTQHLKPEIKIPVITSNRINTPELANQLLEDGVADMISMARPFLADPCFAEKAKLG
                     ESKAINVCIACNQACLDQVFVNKTASCLVNPRACNETTLVYETTNQPKAIAVVGSGPA
                     GLAFAVTAAERGHKITLFEKANQIGGQFNLAKKIPGKEEFQHTLNYFAYQLQKYKVDV
                     RLNTEATVELLKDYDEVVLASGIIPRVPEIKGIDHKKVVSYIDVITQNKPVGSRVAVI
                     GAGGIGFDVAEFLTHDHQLTSEQFYNEWGIDISGQHRGGLKPPEIAPSPREVYLLQRK
                     KEKMGKRLGKTTGWIHRSSLKHKQVKMLSGVNYERIDDQGLHLTIDDKPQVLEVDSIV
                     ICAGQIELKNLYEPLKMAGKLVHLIGGAYKALELDARHAIDQACRLAALV"
     gene            4037..4975
                     /locus_tag="JBH85_12595"
     CDS             4037..4975
                     /locus_tag="JBH85_12595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HAU0947040.1"
                     /translation="MSVGCISMSKIAVVINPIAGGGRGKKVWKVLKPGLHALFEQTVY
                     RISNRVNDLEAITDGLLAENPDSLLIIGGDGTLNHVLNGLIEKDKLKNPQTKIAFFNA
                     GCGGDFTRQFPQQKMTEFLDRLSHNQFIKCDIGKITLANQLSRYFINIASCGLSGHVV
                     LRVSKSKWLKKLGGTLNYLLHALTGLMTYRKTKVRVQIDDALPFDSSILLMAVCSGQY
                     FGGGMHVAPMAKVNDGLFDVVSFNEFSKLNALLKLYKIYSGGHLLDNNVHYVQTKKIK
                     IEPLEESKIEIEADGEIIGCLPAQFELIKETLPLII"
BASE COUNT         1608 a          883 c         1160 g         1572 t
ORIGIN      
        1 aataattttt attatgatta attttgttta tcgttttgat aaaaacaatt gattttattt
       61 atttagcggt ttcacctaaa tttaacaatg aaaatggtgt taatttaatg aggagaaaac
      121 ttatgattac ggtaggcaac aaatttccag agtttcaact taaagcaacg gtggccaatg
      181 atgtaagtaa tgcatttcaa atgatctcta atgaaacgta tcggggtaaa tggttagtcg
      241 tatttttttg gcctaaagat tttacctttg tctgccctac tgaaattgcg gagtttggaa
      301 ggctaaattc cgagtttgcc gatcgagatg ctcaaattct gggtggaagc acagacagtg
      361 aatttgtaca cttggcctgg agaaatcagc atccggactt aaacaatttg ccatttccca
      421 tgctggctga tgttaaacga gaattgacag caaatttggg catattggat gacgaggagg
      481 gagttgccca acgtgcgaca tttattgtag accctcaggg aattactcgt tttgtgatgg
      541 ttacggattt aaatgtaggg cgcaatccag ctgaagtatt acgtgttctg gatgctttac
      601 agaccgatga actttgtcca tgtaattgga aaaaaggtga agaaacaatt catatcaaat
      661 aaattgaaaa aagaggcatc aatcatgtta gagaatgtta aagaaagtat accggaagtg
      721 gctaaagaca tacgcttgaa tttgactaag gtacttgatc tggaacaaag tgatggattg
      781 agtgagcatc agattttagg ttctgcattg gctgtgagtt attctttagg caatgaggtt
      841 ctaattaaag gacttaaaga attggtgcat aacgaacaga ttgtacgtgc agcacaactt
      901 gcggcaagcc ttatggcgat gactaatatt tactatcgct ttgttcattt aactgaaatt
      961 aaggaaattg agcacattcc tgcaggatta cgaatgcaag gaatgatgac tccgggggta
     1021 gacagggtaa cctttgaaat attgtccctt gctgtttctg ctctcaatgg ttgtggggct
     1081 tgtgtcagct ctcacgcacg tcaattgaaa gagcacggct tatctgatac aagccttgca
     1141 cgagttggac gtattactgc tgtgattcat gcggttcatg tgagtggtcg aatcaaataa
     1201 atcattgcat ttgaagcaga ttatctgctt caaatgcaaa aaactattta atgacgccgc
     1261 acgctatacg gtcccccccg ccaccttgtg gaggattgtc actgtaagtg tctccattgg
     1321 catggatcat gacagctaaa ttgtgcatat cacttaattt caaacgaggg gctaaagtag
     1381 gtatcattgc tttcccatta cttgtgacat ataaaacagg taaatctccc aaatgcccgt
     1441 taccataagg gccttggtgg ctattggtat tttgaggatc ataatgtcct tctgcatgca
     1501 ttccgtggtt accacaatct gcagttttat gtaaatggaa accatgcgga ccttcaggaa
     1561 ggttagttaa gtctggtgta atcaaaacac cataaggggt ttgtgtgaag gttaccttgc
     1621 ctattgcaac tggtttggga ccagttgtgt aaattggtgc tgtaagatca tcggcaatag
     1681 ccatgcttga gaataaaata gtaccaatta atattattcc tgatttattc atgtcatttc
     1741 ctggtatttt tcaaagcccg ttaatatttt tagtattatc caagaaaaac atttattcca
     1801 caggatttaa aaaaaaatcg attttttggg gttaaaaata tttttaattc agacatttag
     1861 tatatcagga tttgcacgtt caaaccttca ttgtgtagac catgagagtt tcgtaaactc
     1921 tattttaaag tttagagaga ggattacaaa ttaattgaat cggtaaaaaa tgattgctgt
     1981 ataataagca aggtttatac tttatgtttt aagctttaat taaacagaga gtcctcatgg
     2041 aattgagaat tgataatacc ccttttaaag ccatttttca gcctttggat ctgggcttta
     2101 cccaaatcaa gaatcgttta ttgatgggtt caatgcacac tggacttgag gaagataaag
     2161 aaaatttaaa tcgcctggca agcttttata gagaaagggc tcagggtgga gttggattaa
     2221 tcgtaacggg tggttttgct cctaaccgag ctggccgtct ggctcccttc gctgccaagc
     2281 tgactaatag taaagagcaa catcggcatg aggtcattac tcaagcggtc catgaagcag
     2341 gtggaaaaat tgccttgcaa atattgcatg cagggcgtta tggttatcac ccttttattg
     2401 tagcaccaag cggcattaaa tcccccatta gcccgtttaa accgtgggaa atgagtaaaa
     2461 gacgaattat caaaaccatc aaacattttg cccgatgtgc cagactggct caattggctg
     2521 gctatgatgg ggttgagatc atgggaagcg aaggatattt gataaaccag tttatagtta
     2581 ctcataccaa tcatcgaagg gatgaatggg gaggaagttt ctccaatcgc attcgatttc
     2641 ctattgaaat agttcgcagt gttcgtgagg cggtaggcga gcactttatt atcatttatc
     2701 gcttgtccat gcttgattta gtggctgagg ggagtaattg gcaggaagtg gttaccctcg
     2761 ctaaagccat tgagcaagct ggtgccagtt taatcaatac gggtataggt tggcatgaag
     2821 caagaattcc aacgatagga acgatggttc catctgctgc cttcactcca gtgacccagc
     2881 atttaaagcc agaaattaaa atacctgtaa ttacatctaa ccgaattaat acaccagaat
     2941 tggctaatca attattagaa gatggggtcg cagatatgat ctctatggcc agaccatttc
     3001 tagcggatcc ctgctttgca gaaaaagcaa aattaggcga aagcaaagcg attaatgtat
     3061 gcatcgcttg taatcaagca tgtcttgatc aagtttttgt gaacaaaaca gcatcttgcc
     3121 tggttaatcc ccgcgcatgc aacgagacaa ccttggttta tgaaacaaca aatcaaccga
     3181 aagctattgc tgtagttggt tctgggccag ctggccttgc ttttgctgta acagcagctg
     3241 agcgagggca taaaattacc ctgtttgaaa aagcgaatca gattggcggg cagtttaatt
     3301 tagcgaaaaa aattcctgga aaagaagagt ttcagcatac cttgaattat tttgcctacc
     3361 aactccaaaa gtataaagtg gatgtacgtt tgaatactga agctactgtg gaattactta
     3421 aagactatga tgaagtggtc ttggccagtg gaattatacc cagagttccc gaaattaaag
     3481 gcatagatca taaaaaggtg gtgagttata ttgatgtgat tactcaaaac aaacccgttg
     3541 gctcacgtgt tgccgtcatt ggggcaggag gaattggttt tgatgtcgct gagtttttaa
     3601 ctcatgatca tcaattgact tctgagcaat tttataatga atggggaatt gatattagcg
     3661 ggcagcatag aggtggatta aaaccacctg aaattgcacc gagccctcgt gaagtgtatt
     3721 tattacaacg caaaaaagaa aaaatgggta aacggttggg aaaaactacc ggatggattc
     3781 atcgctccag tttaaaacat aaacaagtca aaatgctttc gggtgtaaat tacgagcgta
     3841 ttgatgatca gggattgcac ttgactattg atgacaagcc tcaagttttg gaagtagatt
     3901 ctatagtgat ttgtgcaggc caaatagaat taaagaattt gtatgagcct ctgaaaatgg
     3961 caggcaagtt ggttcattta ataggaggcg cttataaagc tttggagctt gacgcacgtc
     4021 atgctattga tcaggcttgt cggttggctg cattagtatg agtaaaattg ctgtagtgat
     4081 aaatcctata gcaggcggcg gtcgcggaaa aaaagtttgg aaagtcctaa aacccgggtt
     4141 acatgcccta ttcgaacaaa ctgtttacag aatatctaac agggttaatg atcttgaagc
     4201 aatcacagac ggacttcttg ctgaaaaccc tgacagcctg ttaataatcg gtggagatgg
     4261 cactttaaat catgttttga atggcttaat tgagaaagat aaattaaaaa atccgcaaac
     4321 aaaaatcgct ttttttaacg caggttgtgg cggtgatttt acaagacaat ttccccaaca
     4381 gaaaatgacc gaattcctgg atagattaag tcataaccaa tttatcaagt gtgatattgg
     4441 gaaaattact cttgccaatc aattgtcgag gtattttatt aatattgcca gctgtggtct
     4501 gtcaggacat gtggttttgc gtgtctctaa aagcaagtgg ttaaaaaaac tgggcggtac
     4561 tctgaattac ttgttgcatg ctttaaccgg gttgatgacc tatcgtaaaa ccaaagtaag
     4621 ggttcagata gacgatgctc taccatttga tagctccatc ctgctcatgg ccgtctgcag
     4681 tggccagtat tttggcggag gtatgcatgt agcgccaatg gcaaaagtga acgatggctt
     4741 gtttgatgtg gtttctttta atgaattttc aaaactaaat gcacttttaa aattatataa
     4801 aatttattca ggagggcatt tgttggataa taatgtccat tatgttcaga ctaaaaaaat
     4861 taaaatagag ccgttggaag aaagtaaaat agaaattgag gcagatggtg aaattattgg
     4921 ttgcttaccg gcacagtttg agttaattaa agaaactctt cctcttatta tttaaaaata
     4981 aaggtcaaaa tagggcactt tctataaaat tattttttat caagacaggt tgttgcctca
     5041 agacgagatc acatcattaa gtgcaataaa caacacaaac gattgttcat attttgtcat
     5101 tctgcgcagg cgggaagcca tttttattgt aagctgtgga gcaaaatttg aaatagattt
     5161 tcacttgcgt gggaatgaca catgtgatgt attatttagt caaaatatga ttttgccctg
     5221 gtt
//
LOCUS       DACVWI010000192         5161 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.192, whole genome shotgun sequence.
ACCESSION   DACVWI010000192 DACVWI010000000
VERSION     DACVWI010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5161
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.192"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            137..1564
                     /locus_tag="JBH85_12600"
     CDS             137..1564
                     /locus_tag="JBH85_12600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095369.1"
                     /note="structural flagella protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HAU0947041.1"
                     /translation="MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDD
                     AAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQETTNILQRMRELSVQAANS
                     TNNSSDRSSIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFS
                     IGSTKASSLGGIATATGTEVAGAAAADITIAIGGGAATSINSSANFTGALNGQDATSA
                     YAKAAAINDAGIGGLSVTASTSGTQAVGAIGGTAGDTYNLTINGVAIYTNLNVATALT
                     NSDLRDAINGVSNQTGVVASLNGGNMTLTAADGRNITVTESGTGFTAGTDGLTVTGGA
                     FDGALRGTLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRID
                     AALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQI
                     LQQAGTAMLAQANSLPQSVLSLLGR"
     gene            1647..1928
                     /locus_tag="JBH85_12605"
     CDS             1647..1928
                     /locus_tag="JBH85_12605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947042.1"
                     /translation="MSIEPVSSVNKAAQTDQIKIVEEVSKPEIKNMVYDSALDAETKQ
                     ALDKATGLLQTIITEKISDKVLRKMPSDEYLQLLSLLDDIISGSIDKHV"
     gene            1991..3616
                     /gene="fliD"
                     /locus_tag="JBH85_12610"
     CDS             1991..3616
                     /gene="fliD"
                     /locus_tag="JBH85_12610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HAU0947043.1"
                     /translation="MELSSPGVGSGLDVKNLVDAIVTAEITPSQVRHDKQLNSVNTEL
                     SALGQLKSYLTNLQTSLAKLSSLSQFYTMKSTISDPNYFSATLGTGATKNTYQIEIQK
                     LAQQHSLASSYMTNTGSGTITIDFGTYNSDKTTFTPNPSATSVNITITPGNDSLVAVR
                     DAINNTNSGITASIVQDSQGSRLTITSSKTGENYAMKISGGVASLNYDPTMGVNSLTE
                     TVAAQNSTVKINGLTLVQSSNQLNEAITGVTIDLKKAEIGKIVTLTVDDNKDQLTGLI
                     NEFIKQYNDTMTFLTNLTGYNNETKQGGVFQGDPQFRNLKLNLNKWATTPLANQEGPI
                     RSLADLGIITNKQGLLEIKQDKFKTALDNHYKEIGALFAKTAKANDTGINVKSINSTV
                     KSGTYDVVLTEFTPGVSMSGTIGGLSAISSDGITLTGSADLSGLSINVFSGSAGSRGQ
                     ITVTDGIAVQLSSLLDAYIEIKGDLEQRKDQLNNQVKQLNKIQNEIDIRRKSIETRYL
                     KQFTALDTLLSQLQSTSVFLSQQLANLPQLKLK"
     gene            3626..4036
                     /gene="fliS"
                     /locus_tag="JBH85_12615"
     CDS             3626..4036
                     /gene="fliS"
                     /locus_tag="JBH85_12615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HAU0947044.1"
                     /translation="MRMKNLYSQISSQYKAIELQTRIETASPHELIDLLLQGARSHIA
                     TAQGNIQRNQIKEKGEHIGKAISIIEGLKMSLNHDKGGEIAENLLQLYDYVQQILLKA
                     NLKNDEDLLAQSNMLLAEVHQAWQAINSNAGNEL"
     gene            4359..5105
                     /locus_tag="JBH85_12620"
     CDS             4359..5105
                     /locus_tag="JBH85_12620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAU0947045.1"
                     /translation="MNTFKSSLAFVICLLLGMQSAQAQMRYGETLCNLPEYFCMKIKS
                     GDTWDRLFPNIEEQDIVRRINRMNIRLKPGMIIAVPKNIERLTIYDVSPFPRYIEPSG
                     EKTIYVSQKKLAWGAYDEDGELLWWGPISSGVGKCKVIGGCSTPTGSFRIIRKQDIDC
                     VSTVFPRRANGEHGGALMPYCMHFFRGYALHGSYEVPGYRASHGCVRMFIEDARWLNE
                     EFIDLPGGGMRGTRVILDAPDAQENPDNLQ"
BASE COUNT         1725 a         1005 c         1034 g         1397 t
ORIGIN      
        1 aagcgctttc ggaactaaag tttttttcac tatttccgat aactaaatcg ggtacagtaa
       61 attcacaaca ataaatcgaa tttactgaat tacaaatgtc ccataccagg gattcaggtc
      121 tgaggagact aaaattatgg ctcaagtaat caacactaat gtggcgtcgc tcacagccca
      181 acgtaatttg ggtgtttcgg gcaacatgat gcaaacatcg atccagcgtt tatcatcggg
      241 attaaggatt aacagtgcca aagatgatgc agcaggactc gccatttctc aacgaatgac
      301 tgcacaaatt cgcgggatga accaagccgt tagaaatgcc aacgatggta tttccctggc
      361 tcaggttgct gaaggagcaa tgcaggaaac aaccaatatt ttacaacgca tgcgtgagct
      421 ttccgttcaa gctgctaact caaccaataa ctcatctgac cggtcttcaa ttcaaagtga
      481 aatttcacaa ttaaaaagtg aattggagcg tattgctcaa aatactgaat tcaatggtca
      541 aagaattctc gatggttctt tctctggcgc aagcttccag gttggggcga attcaaacca
      601 aaccatcaat ttcagtatcg gcagcacaaa agcttcttct cttggtggta ttgccacggc
      661 aacaggaaca gaagtagcag gtgcagcagc ggcagatatt actatcgcaa ttggaggagg
      721 agcagcaacc agtattaact cttctgccaa ttttaccggg gcactaaacg gacaagatgc
      781 tacgtcagcc tatgccaaag cagcggctat caacgatgcc gggataggag gactatcggt
      841 tacagcgtct accagcggca cacaagcagt tggcgcaata ggtggaactg caggtgatac
      901 ctacaactta acgattaatg gtgttgcaat atacactaac cttaacgtag caacggcatt
      961 aaccaactct gatcttagag atgccatcaa tggcgtcagt aaccaaactg gagttgttgc
     1021 atcacttaac ggtggtaata tgacactcac tgctgctgat ggcagaaaca ttacggtaac
     1081 agaaagcggt acaggtttta ctgcaggtac tgacggttta actgtaactg gtggcgcatt
     1141 tgatggcgcg ctacgcggta ctttatcaat cagcgccgtt gatactatcg cgattggtgg
     1201 tactgttgct aacattggtt taagtgccaa tatctctaaa gacacagtag ggatagattc
     1261 actggatgtg agcacagcgt ctggcgctca aacagcgatt aagagaattg atgcagcact
     1321 caatagcgta aactctaatc gggctaatat gggtgctctg caaaatcgct ttgaatcaac
     1381 gatagccaac ctgcaaaacg tatcagacaa cttatcagct gctagaagtc gtattcaaga
     1441 tgctgattac gctgctgaaa tggctagttt gaccaaaaac caaattctgc aacaagcagg
     1501 tacagcgatg ttggcacaag ctaatagcct accgcaatct gtattatctt tgttaggtcg
     1561 ataggatgtc gcaatcgaag tgcagcaaca actgcacttc gatttcttta tacctcggtt
     1621 gatgggtata aaaaggagta agaaaaatga gtattgaacc tgtatcttca gttaataagg
     1681 cagcccaaac agatcaaata aaaatagttg aggaagtctc taagccagaa attaaaaata
     1741 tggtttatga ttccgctttg gatgccgaaa caaaacaggc gctggataaa gcaacaggtt
     1801 tgcttcaaac tataataaca gagaaaatat ccgataaagt attacgtaaa atgccttctg
     1861 atgagtattt gcaattacta agcttgcttg atgatattat tagtggttct atagacaagc
     1921 acgtttaata atttgaaata tttattaaaa atttgactag aacaataaca acatagaaaa
     1981 gggatactct atggaactct cttcaccagg cgtagggtca ggacttgatg taaaaaactt
     2041 ggtcgatgcg atagtcacgg cagaaataac tccatcgcaa gtgcgtcatg ataaacagtt
     2101 aaacagtgtc aatacagagt tgtcggcgct tggtcaatta aaaagctatt taactaactt
     2161 gcaaacttcc ttagccaagc tctccagtct tagccaattc tacactatga aatcaaccat
     2221 tagtgatccg aattactttt ccgctactct ggggactggc gcgactaaaa atacttatca
     2281 aattgaaata caaaaactgg cgcaacaaca cagtctggca agctcttaca tgactaatac
     2341 tggaagcgga acaataacca tagattttgg aacctataac agtgataaaa ccacttttac
     2401 accgaatcct tccgctacgt cagtcaacat aaccattacg cctggcaacg atagccttgt
     2461 tgcggtacga gatgccatta ataatactaa ttcaggaata acagccagca tagttcaaga
     2521 tagccagggc tccaggctaa ctatcacttc gtcaaaaacc ggcgaaaatt atgccatgaa
     2581 aattagtggt ggagttgcct cattgaatta tgatcctact atgggagtga attcattaac
     2641 tgaaacagta gcagcacaaa acagtactgt taaaattaac ggattaactt tggttcaaag
     2701 ttctaatcaa ttgaatgagg caataactgg tgtcaccatt gatctaaaga aagcagagat
     2761 tgggaaaatt gtcaccttaa ctgttgatga taataaagat cagctcacag gcttaatcaa
     2821 cgagttcata aaacaataca atgacaccat gactttttta accaacttaa ctggttataa
     2881 taatgaaacc aaacaaggag gagtatttca gggcgaccct caatttcgca atttaaaact
     2941 caatttaaac aagtgggcaa ctaccccttt ggctaaccag gaaggaccaa tccgctcatt
     3001 agccgatttg ggaatcatca ccaataaaca aggtttactg gaaatcaaac aagacaagtt
     3061 taaaactgca ctcgataatc actataaaga aataggagca ttgtttgcaa aaacagccaa
     3121 ggctaatgat actggcataa acgtcaaatc cattaattca actgtcaaat caggtaccta
     3181 tgatgtggtg ttgactgaat ttactcctgg agtcagcatg tctggaacaa taggaggctt
     3241 atctgctata tcatccgatg gcattacatt gacaggaagt gctgatttga gtggtctgtc
     3301 gattaatgta ttttcggggt ctgccggctc ccgtggacaa ataactgtta cagacggtat
     3361 tgcagtccaa ttaagttcct tgctggatgc ttacattgaa attaaaggcg atttggagca
     3421 gagaaaagat caactcaata atcaagtcaa gcaattgaat aaaatacaaa acgaaattga
     3481 tatcaggcgc aaatcaattg aaactcgcta tttaaaacaa ttcactgctc tggacactct
     3541 actcagccaa ttacaaagca ctagtgtttt tctatcccag caattagcca atttacccca
     3601 attaaaattg aaataatagg aggtaatgag aatgaaaaac ctatattcac aaatttccag
     3661 ccaatacaaa gccatagagc tacaaacccg catagaaaca gcctcccctc atgaacttat
     3721 agatttatta cttcaaggag cccgatctca cattgctact gctcagggta atatacagcg
     3781 taaccaaatt aaagaaaaag gagaacatat tggcaaagcc attagcatca ttgaaggttt
     3841 aaaaatgagt ctcaatcatg ataaaggtgg cgaaattgcc gaaaatttac tccagttata
     3901 tgattatgtt caacaaatac tacttaaagc caatttaaaa aatgatgaag atttattagc
     3961 tcagtccaat atgttattag ctgaagtgca tcaagcctgg caagcgatta actctaatgc
     4021 tggtaatgaa ctttaatatt tgcaatgagc tcccatgatt cagcatttgc tttttacagc
     4081 tttatagcaa ccaaaataag agttttcttg atttggcaat tattaaaccc agtccatcta
     4141 tttttatttt cccaatgcaa atagtttaag gcttctaaat atcaataaga tatgaggaat
     4201 tgtctggaag tcttgtagtt atcgaaattt ttgtacattt tggtaatcaa gaataggatt
     4261 ataattttgg caaatttgta tagatttatc gaattggaat ataaagtttt tccattattt
     4321 gccgccaaaa cagttaggat gaataaatta atttcattat gaatacattt aaatcatcac
     4381 tggcatttgt aatttgtctc ttacttggca tgcaatcggc acaggcgcaa atgcgatatg
     4441 gagaaactct ctgcaacttg ccagaatatt tttgcatgaa aataaaaagc ggggacactt
     4501 gggataggct tttccctaac atcgaagagc aagatattgt cagacgcatt aaccgaatga
     4561 atatcaggct caaacccggg atgattattg ctgttcccaa aaatatagag cgtttaacca
     4621 tctatgacgt ctcgcctttt ccaagatata ttgaaccaag tggtgaaaaa acaatttatg
     4681 tcagtcaaaa aaaattggca tggggagctt atgatgaaga cggggaattg ctttggtggg
     4741 gaccaatatc atcaggtgtt ggaaaatgta aagtaatagg tggttgttct acaccaacag
     4801 gttcatttcg cattatccgc aagcaagata ttgattgtgt ttcaactgtt ttcccaagaa
     4861 gggcaaatgg cgaacatggt ggtgcactga tgccttattg catgcacttt tttagaggtt
     4921 atgctttgca tggaagttat gaagttccag gatatagggc cagccacggc tgtgttcgca
     4981 tgtttattga agatgcgcgt tggttaaatg aggaatttat cgacctccca gggggaggaa
     5041 tgagaggaac acgtgtaatc cttgatgcgc cagatgctca agagaatccc gataatctac
     5101 aataatatat tgaaaacaca atcaaaaact cactcccaat agacaaatag tgatcaacct
     5161 g
//
LOCUS       DACVWI010000193         5137 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.193, whole genome shotgun sequence.
ACCESSION   DACVWI010000193 DACVWI010000000
VERSION     DACVWI010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5137
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.193"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            75..602
                     /locus_tag="JBH85_12625"
     CDS             75..602
                     /locus_tag="JBH85_12625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HAU0947046.1"
                     /translation="MNRIKLGISNLIFMGRWLQLPLYLGLILILAGYVYRFIIELFEL
                     IFHLKGLDDTHIMLGVLDLIDVVMIANLLIMVVMGGYETFVSHLQLDSHPDQPEWLDH
                     FDAGAMKIKLALSLIGISSIHLLRTFIDPAKLSNYSIMWQVVIHLTLIVSALAIALTN
                     RLMDQPARKNLQHPD"
     gene            839..2056
                     /locus_tag="JBH85_12630"
     CDS             839..2056
                     /locus_tag="JBH85_12630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microtubule-binding protein"
                     /protein_id="HAU0947047.1"
                     /translation="MTDTPKANLAVDEIKEDTPKDQPLPEENTEILVKKLKVLETTQE
                     NFDQIKKHIAAVIDSLAKNRSFFGRVAAYWGEMQLWLKITLGIVLVVPTLTLGIAIQV
                     ASLIVVSVLTLVTYVGSALLLENHVQKEEHITDRLKEEMIGLADNLGKVIESFEPLRK
                     QIAEQIEYFHKENDRLNLNVTQLSDHIMRLTKQAEQLQKTEQTLRKVREELEKTSETL
                     DEKVQVQTELLQINQEELNRIREEIAKNEIELSEKISELDQVKKEMSVEIEKAETVTQ
                     VLKNTVEKLSQTAIADHNHRESFQNKLNDFLSNKEQSFNDVAQRICEAEHELCFVKEE
                     LNFSNKRYQELLERQEEVVKRLEQLQFSRKPTPYSNAKVLGKLGIMATEEKESPTPVS
                     AEENTIPTQTLTG"
     gene            2073..2336
                     /locus_tag="JBH85_12635"
     CDS             2073..2336
                     /locus_tag="JBH85_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013347340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947048.1"
                     /translation="MLWHIDCLSRAVNQKPISATKFILKQIANYILSIRLKLKLFVDS
                     IIVLLMSYFRSIAHNQFILNQLIFLLYEHKPTENNKRTILLEY"
     gene            2376..2690
                     /locus_tag="JBH85_12640"
     CDS             2376..2690
                     /locus_tag="JBH85_12640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947049.1"
                     /translation="MSTPKWNLSISRAVICVIALFASMICAAAHFVGGIHTNAGYVGW
                     YHPDYYNHDVIGVGNYHPGYGWVAPVYATPTYIIGNTGYNCQTVQQCDSEGNCIQSQN
                     CD"
     gene            complement(2827..3102)
                     /locus_tag="JBH85_12645"
     CDS             complement(2827..3102)
                     /locus_tag="JBH85_12645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HAU0947050.1"
                     /translation="MTKELCMRCYISGRVQGVWFRASAKNLAEQLMISGWARNLADGR
                     VEVFACGKEDKLEEFYTWLQKGPLNARVDVCTRENLPWEDYISFDVL"
     gene            3259..3612
                     /locus_tag="JBH85_12650"
     CDS             3259..3612
                     /locus_tag="JBH85_12650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947051.1"
                     /translation="MKKVILYALPSLMLAILFSPAYADEAPAQLTGTPAEQIQQLNAQ
                     IQSQLQEMQTKQQQQLDALNTQLQNQIKQVQSQLQEQIQTVNSQTQDQIKQIQATLQE
                     QIKQVQQQALQKANQ"
     gene            complement(3794..5125)
                     /locus_tag="JBH85_12655"
     CDS             complement(3794..5125)
                     /locus_tag="JBH85_12655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine/phosphatidylglycerophosphate/
                     cardiolipin synthase family protein"
                     /protein_id="HAU0947052.1"
                     /translation="MLQFFEKGLQYSGEKISTDSYLMRKIVEAAIPSADKGTVSAEKM
                     LGLMNPNQIEIVSGSESAYRLIVHKIKEAKKQILIQAFVWEPGTQVVKDIRNALCDIK
                     HEVEVFLLVDQLDRLAQVFYHGEILPKKPKHDPACLGLDNLPQNIKLHIGTHVHNSIA
                     SNHNKAIWIDGDVILTGANFQQENYGPNGFHDAAMFIPGGAAEAVFYDFKAMWDKRTN
                     KSDEPEISPIYTGQESTESYRNTNSCSVLYVTNTIRQKWALLPFYRAPLPEDPLNNAY
                     MAAIKYAKHTIRIAVPNLNSPEIIHALADFINNRNGHVYLLMGKGFNDFRERFYGGTN
                     QSAIDYFSSLLDEDRQNNLQVRWFHRVNNNENSMKKEVIHMKFMSIDGQVVIYGSSNL
                     DLLSLHNSHETNIVIDNADFAQRAIEQLYLPIFETSIPVLISPKRTCFVCS"
BASE COUNT         1735 a          980 c          874 g         1548 t
ORIGIN      
        1 agtattaaca aaaccttcag gaaagcttat cataagacca ttcaataagt tatattttgt
       61 agtgaatcga caaaatgaat cgaatcaaac ttggcatcag taatcttatt tttatgggaa
      121 gatggcttca acttcccttg tatctcggtt tgatcttgat actggccgga tatgtgtatc
      181 gcttcatcat tgaattattt gaactcattt ttcatcttaa aggcctggat gatacccata
      241 tcatgcttgg agtattggac ctcattgacg tcgtcatgat tgctaatctt ttgattatgg
      301 tagttatggg cggctatgaa acctttgtat cccatttgca attggattcc caccctgatc
      361 aacctgaatg gcttgaccat tttgatgcag gagctatgaa aatcaaattg gctctttcac
      421 tgataggtat ctcctcgatt catctgttaa gaacttttat agaccctgca aaacttagca
      481 attattctat tatgtggcag gttgtgattc atttaacttt aattgtttca gccttggcca
      541 ttgcattaac caatcggttg atggatcagc ccgccaggaa aaacctccaa caccctgatt
      601 gatttaaaaa tctgaaaatt aaataacctc tttctctgat gtcactcact ctgcacatga
      661 caaaacctgt tatgttcaga gtcccgccct aaaaaaataa tgactggctt aaaattattc
      721 gatagaatca ggaaagtttg acctattcag ggaactcatg ggattgaacc agaaagaagt
      781 agattgcaag ctctttcggg ttgaatgtag tcaaaatgga aataaaggaa tatgaatcat
      841 gacagacact ccaaaagcta atctagccgt tgatgaaatt aaagaggata cccccaaaga
      901 ccagcccctc cctgaagaaa acacggaaat attggtaaaa aaactgaaag tattggaaac
      961 tacccaagaa aattttgatc aaatcaaaaa acatattgct gcggttatag attccttggc
     1021 aaaaaatcgc agtttttttg gccgtgttgc cgcctactgg ggagaaatgc agttatggtt
     1081 aaaaattact cttggaatag tattggttgt tcccaccttg acacttggaa ttgcaattca
     1141 agtggcctct cttatagtag ttagcgtcct gactctggtg acttatgttg gtagtgccct
     1201 gcttcttgaa aatcatgttc aaaaagaaga gcatattact gatcgtttaa aagaagaaat
     1261 gataggtttg gcagataacc tgggaaaagt tatcgagtct tttgagcctc tccgcaaaca
     1321 aattgcagaa caaattgagt attttcataa agaaaatgat agattaaacc tcaacgttac
     1381 tcaactaagt gatcatatta tgcgattaac aaaacaagct gaacaattac aaaaaaccga
     1441 acaaactttg cgtaaagtca gagaagaatt ggaaaaaaca tctgaaactc tggatgaaaa
     1501 agtacaagtt caaaccgaat tactacagat aaatcaggaa gaattaaaca gaatcaggga
     1561 agaaattgca aaaaatgaaa ttgaattatc tgaaaaaatt tctgagctgg atcaagttaa
     1621 gaaagaaatg tcagtagaaa ttgaaaaagc cgaaactgtt acccaagtat taaaaaatac
     1681 tgtagaaaaa ctgtcccaaa ctgctattgc agatcacaat catagggaat cgtttcaaaa
     1741 taaattgaac gattttctct ctaataaaga acaaagtttc aatgatgttg ctcaacgtat
     1801 atgtgaagcc gagcacgaac tatgctttgt taaagaagaa ttaaacttta gtaacaaacg
     1861 ttatcaggaa ctattggaac gtcaagaaga agtagttaaa cgtttggaac aactccaatt
     1921 ttcccgtaag cctacgccat atagtaatgc aaaagtactt ggtaaattag gtattatggc
     1981 tactgaggaa aaagagtctc caacacctgt ttcagcagaa gaaaatacaa tcccaactca
     2041 aactctcaca ggttagatgt ttttaaatcg atgtgctatg gcacatcgat tgcttatcac
     2101 gtgcggtcaa ccaaaaacca atcagtgcaa cgaaatttat tttaaaacag atcgccaatt
     2161 acatactgag cataaggctc aaactaaagc tattcgtaga cagcataatt gttctattaa
     2221 tgagctactt tagatctatt gcccataatc aatttatatt aaatcagcta atttttttac
     2281 tttatgaaca caaacccaca gagaacaata aaagaactat acttttagaa tattgactgt
     2341 gaccagtgaa atgattcttt gaaaaggaga gagctatgag cacacccaaa tggaatttat
     2401 ccatttctcg cgcagttatc tgcgtcattg cattatttgc ttctatgatt tgtgctgcag
     2461 ctcatttcgt tggtggaatt catacaaatg cgggttatgt aggatggtat catccagatt
     2521 attacaatca cgatgttata ggcgtgggta attatcaccc aggttatggc tgggttgctc
     2581 cagtgtatgc tactccaacg tatataatag gcaatacggg gtataactgc cagacagtcc
     2641 agcaatgtga ttcagaggga aattgcattc aaagccaaaa ctgtgattag tagtggaaaa
     2701 tgtagcatat caatgcgcat tatctttttt acgagattga gaacaaattt ccctccactt
     2761 aggttctcta atcatcaaaa ctgttaatta gattaatagg taaccaataa tagagcgcat
     2821 tgatttttat aacacatcaa aacttatata atcttcccaa ggtaaattct ctcgtgtaca
     2881 tacatcaact cttgcattaa gaggtccttt ttgcaaccag gtataaaatt cttccagctt
     2941 atcttctttt ccacatgcaa aaacctcaac acgaccatcc gctaaattcc gagcccatcc
     3001 acttatcatc aattgttcag ccaaattttt agcagaagct ctaaaccata ctccttgaac
     3061 tcttcctgaa atataacaac gcatacataa ctccttggtc atgattcttt tccacctatc
     3121 gtaaaaatat cagttacttc atttcatttg accttgcata acctgttttc actctgattc
     3181 tgctatagtt aaattagcat tcttattaga gcaaaataaa ttagataatt tggatttttt
     3241 caataatgga gataaaaaat gaaaaaagtg atattgtatg cacttccatc tttaatgttg
     3301 gcaatcttgt tttccccagc ctatgctgat gaagcccctg ctcaactgac cggcacacca
     3361 gctgaacaga ttcagcaatt aaatgctcag attcaatctc aattacagga aatgcaaaca
     3421 aaacaacagc aacaactgga tgctttaaat acccaattac aaaatcaaat taaacaagtc
     3481 caatctcaat tacaagaaca aattcaaacg gtcaattctc aaacacaaga tcagattaaa
     3541 caaatacaag caaccctaca ggagcagatt aaacaagtac agcagcaagc attgcaaaag
     3601 gctaaccaat agttatttga atttatataa cttcgcccgt gtggacttgg gcattgacaa
     3661 tgcttatgca tctaaaactt aaagacaatt gatggtaatt tgcatgagtt tggataaaaa
     3721 tggaattatt ttttatgtcg aactcatgta tcaggattat aattaatatt ggcttgatca
     3781 aaacagccta aaatcaagaa caaacaaaac aggttctttt aggcgatatc aatacaggta
     3841 tactcgtttc aaaaatgggt agatataatt gttctattgc tctttgtgca aaatcagcat
     3901 tatcaattac aatatttgtt tcatggctgt tatgtaagct taacaaatca agattcgatg
     3961 aaccgtaaat aaccacctgc ccatcaattg acataaattt catatgaata acctcttttt
     4021 tcatagaatt ttcattgtta ttcacacgat gaaaccaacg aacttgcaag ttattttgcc
     4081 tgtcctcatc aagtagtgaa ctaaaataat ctatcgcact ctgatttgta ccgccataga
     4141 atctctcgcg aaaatcattg aatccctttc ccatcaatag atagacatgg ccatttctat
     4201 tattaataaa atccgccagg gcatggatga tttccggcga gtttaaattg ggaacagcga
     4261 ttcgaatagt atgtttggca tatttaatag cagccatgta ggcgttattc aatggatctt
     4321 caggtaaagg cgccctataa aaagggagaa gcgcccattt ctgcctgata gtatttgtca
     4381 catagagcac agaacaagag tttgtatttc tataagattc tgttgactcc tggcctgtat
     4441 atatgggaga aatttctggt tcatcagatt tattggtgcg cttatcccac attgctttaa
     4501 aatcgtaaaa aaccgcttcc gctgcgccgc caggaataaa catggcggca tcatgaaacc
     4561 cattaggacc ataattttcc tgctgaaaat tagcccctgt caaaatgaca tccccatcaa
     4621 tccagatggc tttattatgg ttggacgcaa tggaattatg aacatgagta cctatatgca
     4681 atttaatatt ctgaggtaaa ttatctaaac ctaaacaggc tggatcatgt tttggttttt
     4741 taggaagtat ttcgccatga taaaaaactt gtgccaaacg atccaactga tcgaccagaa
     4801 gaaatacttc gacttcatgt ttgatgtcac aaagcgcatt tcggatatct ttgacaacct
     4861 gagttcctgg ctcccataca aaagcctgaa taagtatttg ctttttagcc tctttgattt
     4921 tatgaactat taaacgatat gcgctctcac tacccgatac tatttctatc tgatttggat
     4981 tcatcaggcc cagcattttt tctgcagaaa cagttccctt atcagcagag ggaattgctg
     5041 cttcaactat ttttctcatt aaataagaat cggtggaaat tttttctcct gaatattgca
     5101 aacctttctc aaaaaattgg agcatgattc actcata
//
LOCUS       DACVWI010000194         5135 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.194, whole genome shotgun sequence.
ACCESSION   DACVWI010000194 DACVWI010000000
VERSION     DACVWI010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5135
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.194"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(39..2051)
                     /gene="ravR"
                     /locus_tag="JBH85_12660"
     CDS             complement(39..2051)
                     /gene="ravR"
                     /locus_tag="JBH85_12660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavR"
                     /protein_id="HAU0947053.1"
                     /translation="MLSQGVRSMGKEKRELEASYIPLPKKGRFWIHSESCYTEEELNF
                     REWILKIRSNSGVHPDYLNNPSSWFANDDQALVNLYEHAWFYSNAYKPRHVLSLDDFH
                     VQPIDNQRLQWPQLYDLMQKVGDYLLLRNKELPPEHLNQPMNFVLLDVNNILKGLSQN
                     NNIQQVKEQLESVTRYLRTIEKNISPLIGSDRLFLANFRKTVDTKIHPHLDHMLETQL
                     LRDKLGELSKDIRKLSSERNRILHYALNANSVNPHSYEFELDKISDSASYPTQAAKHC
                     AQKSNELVVDPLPILHLTKEQLSDCPHFKLITMKDEILDHYAKAVSDLNELERFQKVI
                     QEIMDLLGQAGEVYTVHQFKHQMQSLLTQIDSFIDASSEHIDEIIDANTQAYHKAIQE
                     EQNLPFWKNWLTNEKEKLKIFIKNQDTLSQFPSSSSDLKKTNKALKTRVNEVVSHLNQ
                     PKLKETSFEAIAGQTQALNKLMLSMHDWMKIQHELKGLPLPQPPEPLKIMPTPIPTVD
                     VFSSPPPPLHAYKPLFTALPGNTTAPCMPDNNQCKTTPSSPTQNSLGYLGLIALIPIS
                     VIALYLVIHWMNKKDAQIRVSGTEEEFNKIKEKFEDLLAELKGFEHSEEIDLSDDYYF
                     IVQDYEELIKKTKSNHYDVEALQDTYQELEDLYEEYCNPKKELLNF"
     gene            2311..2796
                     /locus_tag="JBH85_12665"
     CDS             2311..2796
                     /locus_tag="JBH85_12665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HAU0947054.1"
                     /translation="MPSFDIVSKMNEVDLRNAVDNAVREVSTRFDFRGVEATIELKDL
                     TVTLRSESDFQVRQLEDLFRNHCSKRNLSTSGVEIEDEPVHSGKFYTLTMTFKQGIDQ
                     PTAKEIVKYIKDTKAKVQTSIQGDKVRVTGKKRDDLQETIALLKKSNIELPLQYENFR
                     D"
     gene            complement(2919..>5135)
                     /locus_tag="JBH85_12670"
     CDS             complement(2919..>5135)
                     /locus_tag="JBH85_12670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0947055.1"
                     /translation="FLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIESQ
                     IRGYFRQTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVI
                     DGLALKTADKNNLDALIWVFSNSVSGFILIIGLSLLAHASDDKPVRLVTFILLTTFLV
                     LAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILS
                     DSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAV
                     LEGQKNLKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANGQRNNSSLALLLIDLD
                     NFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARH
                     LAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
                     TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNN
                     EALGGVSPNEFIPVAENTGLITELSQWVLQKSCIQIMHWASQYNKMLSFSINVSPVQL
                     TNPQFPKILEKILQEYQYPAEYLELEITENALMGDQDEISKMLNVISDLGIKLSLDDF
                     GKEYSSLNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIE
                     TIPQLKYLVSRKCHFGQGFLLSKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRL"
BASE COUNT         1616 a          851 c          971 g         1697 t
ORIGIN      
        1 atttaggggc aatataaaat gcaatattta aaattgagtt aaaagttcag taattccttt
       61 ttaggattac aatactcttc atagagatct tccaattctt gataagtatc ttgtaatgct
      121 tctacatcat aatggtttga ttttgtcttt tttatcaatt cctcatagtc ttggacaatg
      181 aaataatagt catctgagag atcaatctct tccgaatgct cgaaaccttt aagttcggct
      241 aatagatctt caaatttttc ttttatctta ttgaactctt cttctgtgcc agatactcgt
      301 atttgagcat cttttttatt catccaatga ataaccaaat ataaggctat gacactaata
      361 ggtatcaggg caattaatcc taaataacct aaagaatttt gtgtgggtga gctgggggtt
      421 gttttgcatt gattattgtc aggcatacaa ggagctgttg tattgccagg cagggcagta
      481 aatagaggct tatatgcatg aagtggaggc gggggagaag agaatacatc aactgttggt
      541 ataggagttg gcattatctt gaggggttca ggtggttggg gaagtggaag ccctttcaat
      601 tcatgttgga ttttcatcca gtcgtgcatt gataacatca atttattaag tgcttgagtt
      661 tgtccagcta ttgcttcaaa ggacgtttct tttaacttag gctgatttaa atggctaacg
      721 acttcattga cccgggtttt taaagccttg tttgtttttt tgagatcaga agaactggat
      781 ggaaattgag agagtgtgtc ctgattttta ataaaaatct ttagtttctc tttttcatta
      841 gtcaaccaat ttttccagaa gggtaaattt tgttcctctt gtattgcctt atgataggct
      901 tgagtgttcg catcaattat ttcatcaatg tgttctgacg aagcgtcaat aaaactatca
      961 atttgtgtca gcagagattg catttgatgt ttgaattgat gaacagtata gacttcgcca
     1021 gcctgcccca gaagatccat gatttcctgg atgaccttct gaaatcgttc caactcgtta
     1081 agatcagaga ctgctttggc atagtgatca aggatctcat ctttcatcgt gattaatttg
     1141 aagtgaggac aatcacttaa ttgctcttta gttaaatgca gtataggcag aggatctacg
     1201 accaattcat ttgatttctg agcgcagtgt ttggctgctt gagttggata agaagcggag
     1261 tcactgattt tatccagttc aaattcataa gagtggggat ttaccgaatt ggcattaaga
     1321 gcataatgca agattctatt tcgttcactg gataattttc tgatgtcttt tgataactct
     1381 cccaacttat ctctaagtag ttgagtttcc agcatatggt ccagatgcgg gtgaatttta
     1441 gtatccactg ttttgcgaaa gttggctaaa aataatcggt ccgaaccaat cagtggtgaa
     1501 atattttttt caatagtacg caggtagcga gtgactgact caagttgctc ttttacttgt
     1561 tgtatgttgt tgttctgact tagccctttt aagatattgt ttacatcaag aaggacaaaa
     1621 ttcatgggtt ggtttaagtg ttcggggggt aactccttat ttcttaataa aagatagtca
     1681 ccaacttttt gcattaagtc ataaagttgt ggccattgga ggcgctgatt atcaatgggt
     1741 tggacatgaa aatcatcaag gcttaacaca tgtctcggct tgtaggcatt tgaataaaac
     1801 caggcatgtt cataaagatt aaccaaagct tgatcgtcgt tggcaaacca ggaactggga
     1861 ttattaagat aatccggatg aacccctgaa ttcgatcgaa tttttaaaat ccattctctg
     1921 aagtttaatt cttcctccgt gtagcaactt tcagaatgga tccaaaagcg ccctttctta
     1981 ggtaacggta tatatgaggc ttccagctct ctcttttcct ttcccatact tctcactcct
     2041 tgagaaagca aaaaaaaact taaggtaatt ccagattaac actaaattag caatagcttt
     2101 ttttgctgcc gattaataat atccataacc aactgggtaa tttttattcc aatttatttg
     2161 ataacactct ttgcggaatt aagcaatagt taatcaattg atttgttttg agacaaatat
     2221 aatttttaca agagggaaaa tggaggtgct atttctttca cctatccctg ttttttgata
     2281 aattacaatt ttaattttaa cggattgttt atgccttctt ttgatattgt ttctaaaatg
     2341 aatgaagtgg atttgcgcaa tgcagtagat aatgcagtgc gagaagtaag cactcgattt
     2401 gattttcgag gagttgaggc tactatcgag cttaaagatc tgactgttac tttgcgttct
     2461 gaatctgatt ttcaagtgag gcaacttgag gatttattcc gaaatcattg ctcaaaacgt
     2521 aacctcagca catcaggagt agagatagaa gatgaacctg tacatagtgg aaaattctat
     2581 actcttacca tgacttttaa acaaggcatt gaccaaccta ctgctaaaga gatagtgaag
     2641 tacataaaag acactaaggc taaggtccaa acttctattc agggtgataa agtgagggtg
     2701 accggaaaaa agcgagatga tcttcaagaa accattgctt tattaaaaaa atcaaatatt
     2761 gaattacctt tgcagtatga aaattttcgt gattaattaa tatgaattcg atataaaagg
     2821 caaagaaaag ccttttatat ccttaaatga acgatatcac ctaaaatgca cagcatctat
     2881 aagaaataca ttttgaaaga tccagtatat ggttctaatt aaagtctgtt attgttaatt
     2941 aatgaaatga cttttgcgtt agatttggtt tttcccaact tggtataagc aattgaagtg
     3001 aactcatttg cagttaaggg cttactcagg aggaagcctt gaccaaaatg acattttctt
     3061 gacacaagat attttaattg aggtatggtt tcaataccct cggcaacaat actcattcct
     3121 aactcattag ccaatttaat aataatgtct ataatgacta ctttctcatg ttcgttgtgt
     3181 atatcagaga taaatgtttt atcaattttt aaactgtcaa tagggagagt ttttagtctg
     3241 ttaagggagg agtattcctt gccaaaatca tccaatgaca actttattcc caagtcggaa
     3301 attacattaa gcattttgga gatttcatct tgatcaccca ttaaagcatt ttcagtaatt
     3361 tcaagctcga gatattctgc agggtattga tattcctgta gtattttttc aagaatttta
     3421 ggaaattgtg gatttgttaa ttgaacaggc gaaacattta tggaaaagga aagcatcttg
     3481 ttgtattgac tagcccagtg cattatttgt atgcacgatt tttgtaaaac ccattgactc
     3541 agttctgtta ttaatccggt gttttctgct actggtataa actcattagg agacactcct
     3601 cccagggctt cattattcca gcgtaaaaga atttctgcgc caataatctc catattaatc
     3661 aggttaaatt tgggttggta ataaagttca aattcatcat tttgtaatgc ttttcgaaga
     3721 tgagattcca gctcggattc cctatgctgt gaataaccta gttgttcagt ataaaattga
     3781 taggtatttt ttcctgagtt ttttgcttta tacatagcca agtccgcttt tcttaacaga
     3841 tcttctgtag tatttccatc atcaggaaaa atagatattc ctatactgac cgttactgtg
     3901 attaatttgc cattgatagt atagggactg tttaattcat ttaaaattcg ttctgccaga
     3961 tgccttgcgc tggaagggga ttctatattc agagagatta atgtaaattc atctccaccc
     4021 actctggata aaagatcacc ttttcgaact agtaaaacca ggcgattggc aaattgtttt
     4081 aaaagttcat cgccatgaaa atgaccaaat gtgtcattta ttgccttgaa attatctaaa
     4141 tcaataagca gtaaagccag ggaagagtta tttctttggc cattagcaat ggatttatca
     4201 agcaaatctt caaattccct gcgattaaac aggtttgtca gaggatcatg agaggccata
     4261 tattttaact cttcctgttt tatttttaag tttttttgcc cttccagtac cgctgagtat
     4321 gaaaaaacgt aattaattac aaaacaggtg caaggtataa aataaacaac cactttaaga
     4381 aaatatgcta tattaaaggc actgtcatac ggagttgttg ataatagcat gatgtagata
     4441 gccaacacga cttgggtgag tgacatatag aatacagaat cagataaaat agtcgggtaa
     4501 gatgcataga tttttgggta aacaataatc atcaacataa gatagataaa gacggatatg
     4561 agttcaaaag gtctggaaac ataagaatca taaagccaca tatcaggaat ttgtattatt
     4621 acagcggcat aataaatgac tgcgatagca gccaagacca aaaaagtagt cagtagaata
     4681 aaagttacca atctcactgg tttatcatcg cttgcatggg ccagtaaaga aagtccgatg
     4741 attagaataa agccgctaac actattagag aaaacccaaa ttaaggcatc caggttattc
     4801 ttatctgctg ttttcaaggc taagccatca ataaccaagg tatgaagtgc ttcaatggag
     4861 ccagagaata gaatggcaag gccaataatt aaagcaattt tatcattact cagtcgatac
     4921 tgagtgaacg ctaataacac ggtgactgca gcaagagaaa atcctgacca ttgtaagaga
     4981 gtttgtctga agtaaccgcg aatttgagac tcaatgagtt gggaacctgc tattttccca
     5041 tcatttattg taatggccaa attactaaag tccaaacccc agtttaaacc tatgtaaggc
     5101 aggcctaaca ataaaataat aattaatacc aaaaa
//
LOCUS       DACVWI010000195         5052 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.195, whole genome shotgun sequence.
ACCESSION   DACVWI010000195 DACVWI010000000
VERSION     DACVWI010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 5052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5052
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.195"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..703)
                     /gene="ceg17"
                     /locus_tag="JBH85_12675"
     CDS             complement(<1..703)
                     /gene="ceg17"
                     /locus_tag="JBH85_12675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg17"
                     /protein_id="HAU0947056.1"
                     /translation="MIIYSSSIKNAFGAGTIMQTQKTIYEQIQKDKGSYKGVTLSYSG
                     AQYLPSSFQNNKYSADNPELSPLQAFTERFKNIGALVIRFHLGQGQRAGLLQQVSKFN
                     YSENPVERPAQGGDEETLFFKEESTNSGRINGDVLEFASHLTLGRSKVLNERAQPLVH
                     VNQKSTYGEQGIWDIIHAPVWNVGRAMKYELNKQGFIYINCPAQLNPKEKEILDRQLR
                     TSGKPPALVCEEMGVE"
     gene            complement(1115..1885)
                     /locus_tag="JBH85_12680"
     CDS             complement(1115..1885)
                     /locus_tag="JBH85_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0947057.1"
                     /translation="MVNKMTKLRNLDTYLSLCTEVYDLSKPNPPEEAYAFYRSYVMNV
                     KDPILEPMCGTGRFLLPLLEEGFEIHGFDASEYMLEALNIKAKAKNLKPTVWRGFVEN
                     LTRPEKYNLIFIPSGSFCLLIDPATIRLALQTFYNHLSDEGILLFEGETLKAVPQLDV
                     WRGSVWHKPNGQMIMLSQLATLKDQVCHSIGKYELVHNNSIIHTEVEELRVRIYDPQE
                     LTGILKSCGFKNVRLIKAFDSAATPDDQDETIVYECRK"
     gene            complement(1839..2447)
                     /locus_tag="JBH85_12685"
     CDS             complement(1839..2447)
                     /locus_tag="JBH85_12685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAU0947058.1"
                     /translation="MTPHIIGISGITGAGKSTLAKALSLDLKATLISWDDFDDISLEP
                     EDYIEWYHKGCNYSEFQREDLAKVLAELKAKREIIHPVLRTLLNPAEYIIFDAPLGKL
                     HVQTGEYIDTCVHIEVPLDISFCRRILRDFKDKLQTKENLLEEISFYLNHSRPLFFDD
                     ELKQNATIAIDGLLSTEVQIQIIKNFLIGEQDDKIKKPGYLS"
     gene            complement(2444..2911)
                     /locus_tag="JBH85_12690"
     CDS             complement(2444..2911)
                     /locus_tag="JBH85_12690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947059.1"
                     /translation="MITIDLLKNHPQSIARCATIWHEVLGKIWVPEIPVEQVIQRFSE
                     HLNADKLPITFIALDTGKPVGMCSLRENDGIRPEISPWLGSLVVDPAYQRQGIGNRLI
                     EATKNKARDLGFNKLHLFAFDPTIPNYYSRLGWAIISMDKFKGHPVTVMEILL"
     gene            complement(3063..3626)
                     /locus_tag="JBH85_12695"
     CDS             complement(3063..3626)
                     /locus_tag="JBH85_12695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HAU0947060.1"
                     /translation="MRINFEKANSNHINIIFSWLKEPFIQEFWDNTQAHKDDILNFIN
                     GRTEPSSYADGKYVYWIASGNGHPFAMLMTIQETSEDEIDDIKLINLSKTGHSYGIDY
                     MIGDKNYFGIGYGARTLIEFIDFFIKEVDPKADTFLIDPASDNPRAKHVYIKAGFEYV
                     ADFLMSGDVSGAGKLHHLLIKRIGLIK"
     gene            complement(3692..3768)
                     /locus_tag="JBH85_12700"
     tRNA            complement(3692..3768)
                     /locus_tag="JBH85_12700"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3732..3734),aa:Pro,seq:cgg)
     gene            4071..4697
                     /locus_tag="JBH85_12705"
     CDS             4071..4697
                     /locus_tag="JBH85_12705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HAU0947061.1"
                     /translation="MADGDIEIKAGFVDTDLDDRKLTMIDDLNNPLAIVERVYLIWWH
                     WADFHLHVISPHIDTITPAIVIEPELIPGSNDHEFVYSIHDSGSKLSTSKSQDMFSAG
                     MSMCKLFYTIEKMVYILVERLKSGGVSMEAEVQIAFAGHEIAQRKAFESIINLPYNVV
                     VTNFDPGIWGEKYLQNVKRLADKGYGYPPESPRKIYMHPVSSGTTARK"
     gene            complement(4727..>5052)
                     /locus_tag="JBH85_12710"
     CDS             complement(4727..>5052)
                     /locus_tag="JBH85_12710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HAU0947062.1"
                     /translation="ILFFAYTSALLLFTHGQAIPPATRWYQFSLFSIIFVYYYGSIRF
                     GGQTIGMKAWRFKLTTDSGKKLSRQQIIARFFYFIPATLIAPFCLKGNYKLLHQWTQT
                     GFKKV"
BASE COUNT         1529 a          915 c          966 g         1642 t
ORIGIN      
        1 cttcaacgcc catctcttca caaaccagtg caggaggttt tcccgaggtg cgtaattgcc
       61 gatctaatat ttctttttct tttggattaa gttgagctgg acaatttata taaataaagc
      121 cttgtttatt taattcatac ttcattgcgc gaccaacatt ccaaacaggg gcgtgtataa
      181 tgtcccatat tccctgttct ccgtaggtgc ttttttgatt cacatgaacc aagggttgtg
      241 ctcgttcatt taatactttt gagcgcccta aagttagatg gctggcaaac tcaagtacat
      301 caccattaat tctaccggaa ttagtacttt cttctttgaa aaataaggtt tcctcatccc
      361 caccttgagc tggacgctca actggatttt cggaataatt gaatttagat acttgctgta
      421 ataatcctgc acgttgccct tgacccagat gaaaacgaat taccagtgca ccaatgttct
      481 taaaacgctc agtaaatgct tgtaagggac ttagttcagg gttatcggca ctgtatttgt
      541 tattctgaaa agaagaaggc aaatattgtg caccggaata ggataaggta acgcctttgt
      601 agcttccttt gtccttttga atttgttcgt aaatggtttt ctgggtttgc ataattgttc
      661 ctgcaccgaa tgcatttttt attgacgaag agtatattat cactccaaaa ttaagggaaa
      721 attaagctta ttgagtaatt aatgttctat ggagggcgat caaggtgaag attattgggc
      781 ttaggatatg cttctgaggt tttgaaagtg cttcttggtt ggaggcaatc aaatatcaag
      841 acaaatttta ttattgcgta ggctcgaatc gagtatgatg cggcacatcg tgtgatgtaa
      901 aaatgcgcta tggaataata ctacaaagat ggagttgggc atggagtaaa aggtaaatcc
      961 tatcgaatta aaaacaataa atagactttg ggtagcaaat tttcactaag agcctgagtt
     1021 aattgcaggt tcaccaaaat tatccccagc aatggtgaca tacccataga gtttatttat
     1081 ttctttagat aagctattta gggtattaag aacattattt tcggcattca taaacaattg
     1141 tctcatcttg gtcatctgga gttgcggcac tatcaaatgc tttaatcaaa cggacatttt
     1201 taaaaccaca acttttaaga attcctgtta actcctgcgg gtcgtaaatt cttaccctca
     1261 actcttcaac ctccgtatga attatactat tgttgtgaac gagttcatat ttaccgatag
     1321 aatgacaaac ttgatccttc agggtcgcta attgactgag cataatcatc tggccattgg
     1381 gcttatgcca aactgaacct ctccagacat cgagttgtgg cactgctttg agtgtttcgc
     1441 cctcaaacaa taaaataccc tcatcgctta ggtgattata aaatgtttga agtgctagtc
     1501 ttattgttgc aggatcgata agcaagcaaa aggaaccgct tggtataaaa atcaaattgt
     1561 atttttctgg cctcgttaaa ttttcaacaa aacctctcca tactgttggt ttgagatttt
     1621 tagctttggc tttaatattg agggcttcaa gcatatattc gcttgcatca aagccatgta
     1681 tttcgaatcc ttcttcaagt aatggaagta aaaaacgacc ggtaccacac attggctcta
     1741 aaatagggtc tttcacattc attacataac tgcgataaaa tgcataagcc tcttcaggag
     1801 gattgggttt gcttaagtca tagacctcag tgcacaagct aagataagta tccaggtttc
     1861 ttaattttgt catcttgttc accaattaaa aaatttttga ttatttgaat ttgcacttcg
     1921 gtacttagga gaccgtcaat ggctatagtg gcattttgtt tcagttcatc atcaaaaaac
     1981 aaaggtcttg aatggtttaa ataaaaactg atttcttcaa gaagattttc tttagtttgt
     2041 aatttatctt taaaatccct caaaatgcga cggcagaatg aaatatcaag tggcacctca
     2101 atatgaacac aggtatcaat atattcacct gtttgtacat gaagtttccc taatggagca
     2161 tcaaaaatta tgtattccgc agggttgagc aaagtgcgta agactggatg aataatttct
     2221 ctttttgctt taagctctgc caaaaccttt gcaaggtctt ccctttgaaa ttcactgtaa
     2281 ttacaaccct tatgatacca ctcgatataa tcttcgggtt ctaaagaaat gtcatcaaag
     2341 tcatcccatg aaataagagt tgcttttaaa tccagggaca atgcttttgc caaagtggat
     2401 tttccagcgc ctgttatacc gctaatgcca ataatatgag gagtcataat aatatctcca
     2461 ttacagtgac tggatgtcct ttaaatttat ccatgctgat tatggcccaa ccaaggcggg
     2521 agtaataatt aggaatggtt gggtcaaagg caaaaagatg cagtttatta aaacctaaat
     2581 ctctggcttt attttttgtg gcttcaatta gcctgtttcc aataccttgt ctctgatagg
     2641 cagggtcaac cacaagcgag ccaagccatg ggcttatttc tggcctgata ccatcatttt
     2701 cacgcaaaga gcacatccca acgggtttcc ctgtatcaag tgctataaac gtaatgggta
     2761 gtttgtcagc atttaggtgc tcactgaacc gttgaataac ttgttcaacc gggatctcgg
     2821 gaacccagat ttttccaagt acttcatgcc aaattgttgc acaccttgct atgctttgtg
     2881 gatgattttt gagaaggtcg atggtgatca tgctttacct gcattgacga gttcaggtat
     2941 taaacttttg aggcgtagaa tagtagttgg taacatttgt ttgagcacaa ggatcttagc
     3001 ataaaaagca aaagacttat tgaggttttt aattgctaaa gtaatgtgat ttattccggt
     3061 aatcatttga ttaaaccaat gcgtttaatc aataaatgat gaagttttcc cgcgccagag
     3121 acgtcacctg acatcaaaaa atcagcaaca tactcaaaac ctgcttttat ataaacatgc
     3181 ttggctctgg gattgtcact tgcgggatca attaaaaacg tatcggcttt cggatcgact
     3241 tcttttataa aaaaatcaat aaattctatc aaggttctag ctccataacc tatgccaaaa
     3301 tagtttttat caccaatcat gtaatcgata ccataagaat gtccagtctt ggaaaggtta
     3361 atcaatttaa tgtcgtcgat ctcatcttcg cttgtttctt ggattgtcat cagcattgcg
     3421 aaaggatgcc cattaccgct tgctatccaa taaacatatt taccgtccgc ataggatgag
     3481 ggttctgtgc gaccattaat aaagtttaag atgtcatctt tatgggcttg cgtgttgtcc
     3541 cagaactctt gaataaaggg ctctttaagc caactaaaga taatgttgat atgattggaa
     3601 ttggcttttt caaaatttat gcgcattatg ttaacctggg tctccgatat aatttgtaac
     3661 cgatgtcttc ggaatagacc ctgctcttaa ttggtcggag tgacaggaat tgaacctgcg
     3721 acccctgcct cccgaaggca gtgctctacc agtctgagct acactccgct tttgtttgaa
     3781 gttacattca attaatctga tattttagaa agtatacgag ttattttact tgaagtgaat
     3841 ttatccgtcg atttattgtt gatttgagta cttaaatttg cctcaaaata acccttaatt
     3901 tatccatata aaacgatata aagacaaatt attatgaaaa agcgggtatc tattttatgc
     3961 tatacattga ttttacggct tttttacctt ttcttaagct ctgtttaatg ttctattgtc
     4021 aattttgggc taatataaca ataatatcct tactacccgg gtaaatataa atggcagacg
     4081 gcgatatcga aatcaaagca ggtttcgtag atactgatct agacgatcgc aaactgacaa
     4141 tgatagatga tttgaataat ccattagcca tagtggagcg agtctatcta atatggtggc
     4201 attgggcaga ttttcatctt catgttattt ctccacatat tgatactatt actcctgcga
     4261 tagtcattga acccgaactg atacctggtt ctaatgatca tgaatttgtt tattctattc
     4321 atgatagtgg ctctaaatta tctacatcca aaagccagga tatgtttagt gcgggtatgt
     4381 ccatgtgcaa acttttctat actattgaaa aaatggtcta tatactggta gagcgcttaa
     4441 aatctggtgg tgtcagtatg gaggcagagg ttcagatagc ttttgctggc catgaaatag
     4501 cgcagagaaa ggcttttgag tcgattatta atttacctta taacgttgtt gtgactaatt
     4561 ttgatcctgg aatatggggt gaaaaatatt tacaaaatgt gaagcgactg gcggataaag
     4621 ggtatggtta tcctcctgaa tccccaagaa aaatttatat gcatccagta tcttctggaa
     4681 ctactgcacg aaaataaata attagcgaga atggctcaac agtgttttaa acttttttaa
     4741 aaccagtttg ggtccattga tgcaaaagct tataattccc ttttaagcaa aaaggggcta
     4801 ttaaagtggc aggaataaaa taaaaaaatc gggcgataat ttgttgtctt gatagttttt
     4861 taccagagtc agttgtcagt ttaaatctcc aggctttcat acctatagtt tgtccaccaa
     4921 atcgaataga accataataa taaacaaaaa tgatactgaa taatgaaaat tgataccaac
     4981 gggtagcagg aggaatggct tgtccatgag tgaataagag cagggcagag gtgtatgcaa
     5041 aaaataaaat gg
//
LOCUS       DACVWI010000196         4987 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.196, whole genome shotgun sequence.
ACCESSION   DACVWI010000196 DACVWI010000000
VERSION     DACVWI010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4987
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.196"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            17..199
                     /locus_tag="JBH85_12715"
     CDS             17..199
                     /locus_tag="JBH85_12715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018576923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947063.1"
                     /translation="MIEIFLMDISKKEKCKLLQDFLLDCKNEMEAQDQNMHPEVHHNL
                     SQAYQLAQNYLRKLQE"
     gene            286..1140
                     /gene="folD"
                     /locus_tag="JBH85_12720"
     CDS             286..1140
                     /gene="folD"
                     /locus_tag="JBH85_12720"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HAU0947064.1"
                     /translation="MPASLIDGREISALRRAELKQRVLYHVEQGQRAPGLAVVLIGND
                     PASVIYVSNKRKACEEVGITSHSYDLPAETTQEKLIELINELNQSDKIDGILIQLPLP
                     KHINERTIIEYIKPEKDVDGFHPYNLGRLAQRNPFLRPCTPLGIMNLLHHYELNVKRK
                     HAVVIGASNIVGRPMSLELLLAGATVTICHKFTQQLQKFVEIADFLIVATGKMDVIAT
                     DWLREHQVVIDVGMHRLPDGSIRGDIDFKKAVEKVAWITPVPGGVGPMTIVTLLENTM
                     MSAARLRE"
     gene            complement(1143..1352)
                     /locus_tag="JBH85_12725"
     CDS             complement(1143..1352)
                     /locus_tag="JBH85_12725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011215341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947065.1"
                     /translation="MGLHEEFEDQSFSDYNYDEEIDDHIDDLNQKKKIRRMLEDRLER
                     KRLKEEFKDDFDELSGEFDWDELDK"
     gene            1613..2476
                     /locus_tag="JBH85_12730"
     CDS             1613..2476
                     /locus_tag="JBH85_12730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HAU0947066.1"
                     /translation="MKPSFMLSYQHGYHAGNFADVIKHITLTRLLAYLTHKDKPLFYL
                     ETHSGRGIYDLKDKQSLKTEEYKEGINPVWLDRENLPSLFLEYISVIKQINLNSTLSY
                     YPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPP
                     PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR
                     EISSKSVRIELHLNPLINEGMTGCGLWIINPPYTFPSEIKLVLETLTTYFNPGSSSYM
                     IESGSKLCHEL"
     gene            2480..3244
                     /gene="gloB"
                     /locus_tag="JBH85_12735"
     CDS             2480..3244
                     /gene="gloB"
                     /locus_tag="JBH85_12735"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HAU0947067.1"
                     /translation="MTILPISAFSDNYIWTFIDKIAGVLDCVDPGEAAPIIRFAQSNQ
                     LTLRTILLTHHHYDHIGGVDSLIKQWPSCKVYGPIDERINNVTHPIKQGQSVQVGSLH
                     FHILFNPGHTSTHISYYEPQQGWLFCGDTLFSAGCGRVFDGTIEELHESLLLFKKLPR
                     NTKVFCAHEYTFQNLKFAHTVEPCNSSVINYMQQILKQPSSCTLPSNIDLELSINPFL
                     RTDKEQVKQYALSHGANSSDSLDVFKVLRNQKNSFK"
     gene            complement(3223..3402)
                     /locus_tag="JBH85_12740"
     CDS             complement(3223..3402)
                     /locus_tag="JBH85_12740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HAU0947068.1"
                     /translation="MNDKNLFIINKLQFNGLTCYYNWLISLLKINEGLNPFWFNWEQM
                     GFYLIFLLYYLNEFF"
     gene            3359..4798
                     /locus_tag="JBH85_12745"
     CDS             3359..4798
                     /locus_tag="JBH85_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HAU0947069.1"
                     /translation="MNCNLLIIKRFLSFILIFIGISNPAISGTAPDVWDVLRSEFSLS
                     HEVTRPEVQEQIRWLISHPSYINKVSSQSEPYIYHVLGEIKKRKLPGELALLPMIESA
                     YDPFAYSGAGAAGIWQLMPRTGSDLGLKQDWWFDGRRSIGPSTDAALNYLVYLNKYFS
                     GNWILAIAAYDSGEGTISRALKSTARNGRKVQFWNLPVPRETKVYIPRLLALAEIINN
                     PKRYKISLPNIPYLPYFEEVNIGSQIDLNHAAKLAGISYKELIKLNPGYNRWTTAPYK
                     PFKLLIPAEKVERFNLNLSNIPEDKRVNWTKHQVKRGDSLDAIAKRYHTTVNLIKQLN
                     QLTSNKVQLNQSLLIPSSKNSPVAAKIPPQEKKPATKQLAPMKNVRIIHIVQNNDSYQ
                     KIQKTYGVAAKEIQNWNKLANNAPLRKGQRLIIWKRVKQPVVYIVKSGDSLSVIAKKH
                     QTKVNTIISLNPGLKKSMLLRLGQKILIG"
BASE COUNT         1705 a          940 c          875 g         1467 t
ORIGIN      
        1 gaatagagaa aatgaagtga tcgaaatatt tctaatggat atcagcaaaa aggaaaaatg
       61 caaattgtta caagattttc ttctggattg caaaaatgaa atggaagctc aggatcagaa
      121 catgcatcct gaagtgcatc acaatttatc gcaagcttat caactggcgc aaaattattt
      181 aagaaaactg caagaataag tgtattttcc ttgttgcata tgaatcatat tgcattagaa
      241 taacccgtaa ttcataatgt actccataaa aattgcgaga agaaaatgcc tgcatcacta
      301 atcgatggaa gagaaatctc tgcccttcgc agagctgaac taaagcaaag agtactatac
      361 catgtggagc aagggcaaag ggcgcctgga cttgctgttg ttttaattgg caatgaccct
      421 gcatcagtga tttatgtcag taataaaaga aaagcttgtg aagaagtagg gatcacctct
      481 cattcttacg atttgcctgc cgaaacaact caggaaaaat taattgaact gatcaatgag
      541 ttaaatcaat cggataaaat tgatggtatt ttaatccaat tacctttgcc caaacatatt
      601 aacgaaagaa ctataataga atacataaaa cccgagaaag acgtggatgg atttcatcct
      661 tataatttag gccgacttgc tcaacgaaac ccgtttttaa gaccatgcac tcccttgggg
      721 attatgaatt tattacatca ctatgagctc aatgtaaaaa gaaaacatgc tgtagtgatt
      781 ggggcatcca atattgttgg aaggccaatg agtctggagt tactattagc tggtgctacc
      841 gtaacaatat gccacaagtt tacccaacaa ttacagaagt ttgttgagat tgctgatttt
      901 ctaatagtag ccactggaaa gatggacgtc attgccactg actggctcag agagcatcaa
      961 gtagtgattg atgtaggaat gcatcgtttg cccgatggca gtatcagggg tgatattgat
     1021 tttaagaagg cagtcgaaaa agtagcctgg atcacacctg ttccaggggg agttggccca
     1081 atgactattg tcactttgct tgaaaatact atgatgtcag cagcaagatt aagagaatga
     1141 agttatttat ccagttcatc ccaatcaaat tcaccactta gctcatcaaa atcgtctttg
     1201 aactcttctt ttagacgctt acgttcaagc ctatcctcaa gcatacgcct gattttcttt
     1261 ttttgattta aatcatctat atgatcatca atttcttcgt catagttgta atctgaaaat
     1321 gattgatcct caaactcttc atgtaaaccc atcttagtct cccaatttac tcccctcaaa
     1381 aaaagtatag tgcataaatt atgaaataaa gtaactggaa gcaaaatagg cctcttgcat
     1441 aacctgatta ttttgcttca ggacatggcg catacggagt ttacatgcag tacataagtg
     1501 ttgaagaaac gcttacgatg cgggagtaaa ataaaagaga ccgcttatgc aagaagtcta
     1561 atatgcggct acagcataaa ccattatttt gatataattt ggaaaatatc ttttgaagcc
     1621 ctctttcatg ctcagttatc aacatggcta tcatgccgga aattttgctg atgtcatcaa
     1681 gcacatcacc ctaactcgac tattggctta tctaacccac aaagataaac ccttattcta
     1741 tcttgaaacc cattcaggtc gagggatata tgatttaaaa gacaagcagt ctttaaaaac
     1801 agaagaatat aaggaaggaa ttaatccagt atggctcgat agagagaatc tcccctctct
     1861 ttttcttgaa tatattagtg taatcaagca aataaatctt aattcaacat tgagttatta
     1921 tcctggttcc ccctatttcg caatcaatca actgcgctct caagaccgat tatacttatg
     1981 tgaattacac ccaacagaat ataatttctt attaaaactt cctcatttta ataaaaaagt
     2041 ttatgttaac cacacggatg gagtttcaaa attaaatgcc cttttgccgc caccggaaaa
     2101 acgtgggtta atttttattg atccctcata tgaaagaaaa gaagaataca aagaaattcc
     2161 atacgctata aaaaatgctt actcaaaatt ttctaccggc ttatattgtg tttggtatcc
     2221 tgttgtcaat aaagcatgga ctgaacaatt cttgaggaaa atgagagaaa ttagttccaa
     2281 atcggtaagg attgagcttc atttgaatcc actcattaat gaaggaatga ctggttgtgg
     2341 tctttggata attaatcctc cctatacttt cccttcagaa atcaagttag ttttagagac
     2401 attaacaact tattttaacc ctggctcatc ttcttatatg attgaatcag gttcaaaatt
     2461 atgtcacgag ttataaatta tgactatcct gcctatttcg gctttttcag ataattatat
     2521 ctggaccttt attgataaaa tagctggggt attagattgt gttgatccag gagaagcagc
     2581 accaataata cgctttgccc aatccaacca gctgacacta agaacgatat tattaaccca
     2641 ccaccactat gatcatatag gaggtgttga ctcgctaatc aagcaatggc catcttgtaa
     2701 ggtctatggc cccatagatg aacgaatcaa taatgtaacc cacccaatta aacaaggtca
     2761 atctgttcaa gtgggctctc ttcactttca tattttattt aatccagggc atacttctac
     2821 ccatatcagt tattatgaac cacaacaagg atggttattt tgtggagata ctctattttc
     2881 tgctggttgc ggtagagtgt ttgatggaac tatagaggaa ttgcatgaat ccctgctctt
     2941 atttaaaaaa ctcccgcgaa atactaaagt tttttgtgct catgaataca ccttccagaa
     3001 tttaaaattt gcacataccg ttgagccctg caattcatca gtcatcaatt acatgcaaca
     3061 aattctgaaa caaccatcat cttgtactct cccgtctaat atagacttgg aattatcaat
     3121 taatcctttt ttacgcactg ataaagagca agtaaaacaa tatgctctct cgcatggtgc
     3181 gaattcttca gattctctgg acgtttttaa agtattgaga aatcaaaaaa actcattcaa
     3241 ataatataac aaaaagatta aataaaaacc catttgctcc caattaaacc aaaaagggtt
     3301 taatccttca ttaattttta gtaaactgat tagccaatta taataacagg taagaccatt
     3361 gaattgtaat ttattgatta taaaaagatt tttatcattc atccttattt ttattggtat
     3421 ttctaacccg gcaatttctg gcacagctcc agatgtatgg gatgtattac gtagtgaatt
     3481 tagcttaagc catgaagtaa ctcgcccaga agtgcaagaa caaatcagat ggctaatttc
     3541 tcatcctagt tatatcaaca aagtaagtag ccaatctgaa ccttacattt accacgtatt
     3601 aggtgagata aagaaaagaa aactgcccgg agaattggcg ctactcccca tgatagaaag
     3661 tgcatatgat ccttttgcct attcaggagc aggcgctgct ggtatatggc aactcatgcc
     3721 tcgaactgga agcgatcttg gattaaagca agactggtgg tttgatggaa gacgtagcat
     3781 tggcccttca actgatgccg cattaaatta cctcgtctat ctaaataaat attttagtgg
     3841 taactggatt ttagctattg ccgcttatga ctctggagaa ggaacaattt cacgggcgct
     3901 caaatcaacc gcacgtaacg ggcgcaaggt gcaattctgg aatctgccag ttcccagaga
     3961 aaccaaggta tatatcccgc gtttattagc tctggcagaa attattaaca atccaaaacg
     4021 gtataaaata tcacttccca atattcccta tcttccttat tttgaagagg tcaatattgg
     4081 tagtcaaatt gatttaaatc atgccgctaa actcgccggc atcagttata aggagttgat
     4141 taaactaaat cccggttata atcgatggac aactgcacct tataagccat ttaaattact
     4201 aatacctgct gaaaaagtcg aaagatttaa cttgaatcta tcgaatatac ccgaagataa
     4261 gcgcgtaaac tggactaaac atcaagtaaa aagaggtgac agcttggatg ctattgcaaa
     4321 gagatatcac acaacagtca atttgataaa acaactcaac caattaacca gcaataaagt
     4381 tcaacttaat caatccctac tcattccgag cagcaaaaat tccccggtag cagctaaaat
     4441 acctccacaa gaaaaaaaac ctgctactaa acagctggca cctatgaaaa atgtccgtat
     4501 tattcatatc gtacaaaata atgatagtta tcagaaaatt caaaaaactt atggggttgc
     4561 agctaaagag atacaaaact ggaataaatt ggcaaataac gcgccattac gtaaaggcca
     4621 gcggctgatc atatggaaaa gagtcaagca acctgttgtg tatatagtaa aatcagggga
     4681 tagtttgagc gttattgcca aaaagcacca aacaaaagtg aatactatta tcagtttaaa
     4741 tccaggactt aaaaaatcaa tgctccttcg cttgggacaa aaaatattaa ttggctagat
     4801 tatgtgcatt atcatgatat aaactagata gattaatgca tctgtttgaa acagaagcat
     4861 gcttttgagg gaacaccaag actactgcat gccgctaaaa gcttaaagat tattaaataa
     4921 aaaatctgtg ataagtatgt aaattgtgca aattattttg ttaatacggt atgaagcttg
     4981 caggtga
//
LOCUS       DACVWI010000197         4948 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.197, whole genome shotgun sequence.
ACCESSION   DACVWI010000197 DACVWI010000000
VERSION     DACVWI010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4948
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.197"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..735)
                     /locus_tag="JBH85_12750"
     CDS             complement(<1..735)
                     /locus_tag="JBH85_12750"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HAU0947070.1"
                     /translation="MFQFNTSQHTLMQILGDGACHSGSELGNALKISRSAVWKQINQL
                     NDLGIPIIRIPHQGYQLEKPLILLDSNEITKQLHSKGFSQPFNLHLFTSIDSTNRYLK
                     DLPSSSAVEICCTEMQTQGRGRFGRHWHSPFGENIYCSTRWSFNCDISKLSGLSLVIS
                     LATVLTINEFIVSDKVKIKWPNDILWNNKKLCGILVEIIAESNATAQFIIGVGLNINS
                     DTKNNPLPDKSWCSFFGITNQNYNRNS"
     gene            complement(739..1476)
                     /locus_tag="JBH85_12755"
     CDS             complement(739..1476)
                     /locus_tag="JBH85_12755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HAU0947071.1"
                     /translation="MIITGFTPLNTQNCILNESRIDLWQFSLDYELHSAYQLLNADER
                     SRADRFYFNRHKRRFTNARATLRIILARYLNTPPERLEFTYNAHGKPNVINSQKLQFN
                     ISHTGEMAILAVGKTYPIGVDIERYSARPYEGIGKNLFSEQEYQELKKAHQSLKPALF
                     FHIWAQKEAFIKASGLGLSYPTKEFHVPTSFPTKQLVDDPLHNMTWQLRSFMPEVCCS
                     GALCYHPSVREIRHGIVQLQQNISLKF"
     gene            1558..2511
                     /locus_tag="JBH85_12760"
     CDS             1558..2511
                     /locus_tag="JBH85_12760"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HAU0947072.1"
                     /translation="MTRQFLEFEQPIEELNQKIEALRMVGSDNEVNLSEEIARLEAKC
                     SELTENIFSRLEPWQIAQMARHPLRPQTTDYIERIFTDFQELHGDRSYSSAPAIIGGM
                     ARLNGEPVMVLGHQKGKRTKEKVYRNFGMARPEEYRKALRLMRMAEKFKMPVVTFIDT
                     AGAYPGIGAEERNQSEAIARNLFAMSRIKTPIVCIVTGEAGSGGALAIGVGDKIIMLQ
                     FSIYSVISPEGCASILWKDASKASEAARAMGITADRIFENELVDMVVPEPLGGAHRDV
                     DEMASRLKRLLTSELQALKKVPLDQLIELRYQKFMAMGACD"
     gene            2498..3799
                     /gene="tilS"
                     /locus_tag="JBH85_12765"
     CDS             2498..3799
                     /gene="tilS"
                     /locus_tag="JBH85_12765"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HAU0947073.1"
                     /translation="MLVTRPLLSPEWVARLKQFKKLIVGFSGGLDSTVLLHVLASTPP
                     LSNQLLAVHINHGISGNSLNWQRHCEQLCLDLGIAFIAKAIEFDRSANVEEAARNARY
                     DFFSSLLEDNDCLVLGHHLDDQAETVLLQLFRGAGVDGLAAMQECSNLGAGQLARPFL
                     TCPRVELEHYARIHELKWIEDESNQDTKYSRNYLRHRVMPLLLEKWPGVAGNISRAAT
                     HCQQAKANLEVLAIKDCPDLLNATDHLLIEPIKGLEFERITNVLKFWLKKNRIQLPSS
                     KTFHRIIHEIIFAKLDAMPTVSWDQIQVRRFQQHLYLLKADQINLPKAIKWQQFPASL
                     TYPDADIKLSAVKAQKGLMIPKDAQIEIRFRKGGEEIYWHGQTKHLKKLFQEWQIPPW
                     VRDRVPLVYINDQLACVVGYAVSDLFFTTNPLEAWSIVNNS"
     gene            4107..4643
                     /locus_tag="JBH85_12770"
     CDS             4107..4643
                     /locus_tag="JBH85_12770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947074.1"
                     /translation="MISESVIPLAYFITFTCYGTWLHGGKSTSVDYYNNIPGTEFIPY
                     DRRRLYQVKNLMLETPYSLDELRRHIVLQAICEVCGYRQWVLLAAHVRSNHVHLVIHA
                     QPSPERVMNTVKAYASRYLNYTRLDGDRKNRWTRHGSTRYLWNEEEIEATIQYVVYEQ
                     GLPMAVFENKNRVFGVEV"
BASE COUNT         1436 a          917 c         1059 g         1536 t
ORIGIN      
        1 cgaattccga ttgtaatttt gattagttat tccaaaaaaa gaacaccagg atttatctgg
       61 tagaggattg ttttttgtat cagagttgat atttaaacca acacctataa taaattgtgc
      121 tgtcgcgtta gattctgcaa taatctctac taaaatccca cataactttt tattattcca
      181 caggatatca tttggccatt ttatttttac tttatcagat acaatgaatt catttatagt
      241 gagaactgtt gctaaactta tgactaaact gagacccgat agcttagata tgtcacaatt
      301 aaaactccac cgggtagagc agtaaatatt ctctccaaaa ggagagtgcc agtgtcgtcc
      361 aaagcgccct ctcccttgag tttgcatttc agtgcagcaa atttcgacgg ctgagcttga
      421 aggcagatct ttcaggtagc ggttggttga gtcaatcgat gtaaataaat gcaggttaaa
      481 cggttggcta aatcctttgc tgtgtaattg cttggtaatt tcattggagt ctagcaggat
      541 taaaggcttt tccaattggt atccttgatg tggtatgcgg ataataggta tgcctaaatc
      601 attaagctga ttgatttgtt tccatactgc tgagcgactg atttttaaag cgtttcctaa
      661 ttcactccca ctatgacatg ccccatcacc cagtatttgc attaacgtat gttgagaagt
      721 attaaattga aacatgattt aaaattttaa actaatattt tgttgaagct ggacgatccc
      781 atgacgaatt tctctaacag aagggtgata gcataaagcg ccactgcagc atacttccgg
      841 catgaatgag cgtagttgcc aggtcatgtt atgcaaggga tcgtcgacca attgttttgt
      901 tgggaaactg gtagggacat gaaattcttt ggttggatag gagagaccta aaccactagc
      961 tttgatgaac gcttcctttt gagcccatat atgaaaaaat aaggctggct taagggactg
     1021 atgtgctttt ttcagttcct ggtattcttg ctcggaaaac aaatttttac caatcccttc
     1081 ataaggccgg gctgaatatc tttcaatatc cactccaatc ggataggttt tacccactgc
     1141 caatatggcc atttcaccag tatgactgat attaaattgc aatttttgcg aattaatcac
     1201 attgggcttg ccatgtgcat tgtaagtaaa ttccaatcgt tcagggggcg tattaaggta
     1261 tcgggccagg ataattctta aagttgctct ggcgttggta aagcgtcttt tatggcgatt
     1321 aaaataaaag cgatcagcac gggagcgttc atcggcattc aataactgat acgcactatg
     1381 caattcatag tctaatgaga actgccaaag atcaatacgt gactcattta aaatgcagtt
     1441 ttgtgtgttt aatggagtaa atcctgtaat tatcatctgt tgtatctgaa atctggcatc
     1501 gattaacggt taagagtatc atataccaaa gatgtttaat tcaccaaaga gtaatcaatg
     1561 acccgacaat ttttggaatt tgaacaacct attgaagagt tgaatcaaaa aattgaagca
     1621 ctgcgtatgg ttggcagtga taatgaagtt aatttaagtg aagagatagc tcgacttgaa
     1681 gcgaaatgct ccgagttaac agagaatata ttctccaggc ttgaaccatg gcaaatcgct
     1741 cagatggcca gacatccttt aaggccgcag actactgact atattgagcg aatttttact
     1801 gattttcagg agttgcatgg tgatcgcagt tattcttcag cccctgcaat tatcggaggc
     1861 atggcgcgat taaacgggga gcctgtcatg gtgcttggtc accaaaaagg taaacgtacc
     1921 aaggaaaaag tatacagaaa ctttggtatg gcaagacctg aagaatacag gaaagcactg
     1981 cgtttgatga gaatggctga aaaattcaaa atgcctgtag tcacatttat tgatacggct
     2041 ggagcttatc ctggcatagg tgctgaagaa cgtaaccaat cagaagccat tgcacgcaat
     2101 ctttttgcta tgtctcgcat taaaacacca attgtctgta ttgttacagg agaagccggt
     2161 tcaggtggtg ccttggcgat tggggtcggt gataagatta ttatgctgca attcagcatt
     2221 tattcagtca tttctcctga ggggtgcgcc tcaatccttt ggaaagacgc ctctaaagcg
     2281 agtgaagccg cgcgtgctat gggaattact gcagacagaa tattcgaaaa tgaattggtt
     2341 gatatggtag tccctgagcc tttggggggc gcacaccgag acgttgatga gatggcaagt
     2401 cgcttgaaga gattattaac gagtgaactc caggctttga aaaaggtgcc tctggatcaa
     2461 ttaattgagt taaggtatca aaagtttatg gcaatgggtg cttgtgacta ggcctttact
     2521 aagtcccgaa tgggtagctc gccttaaaca attcaagaaa ttgatagtag ggttcagcgg
     2581 tggtctggac tctacagtgc tcctgcatgt ccttgcctca actcctccct tgtctaatca
     2641 acttttggct gtccatatta accatggcat tagtggaaat tctctgaact ggcaaaggca
     2701 ttgtgagcaa ttgtgcctgg atttaggtat tgcttttatt gccaaagcga ttgaatttga
     2761 tcgttctgca aatgttgaag aagcagcacg caatgcgaga tatgattttt tttcctcctt
     2821 attagaggat aatgattgtc tggttttggg gcatcatctt gatgatcagg ctgaaacagt
     2881 tcttttgcaa ctgtttcgcg gtgcaggagt tgatggcttg gcagccatgc aggaatgcag
     2941 caatttgggt gctgggcaat tggcaagacc atttttgacc tgccccagag tggaattaga
     3001 gcattatgct cgtattcatg aattgaaatg gatagaagac gaaagcaatc aagatacaaa
     3061 atattctcgc aattatctgc gccatcgcgt aatgccatta ttgcttgaaa agtggccggg
     3121 agtagcaggt aatatttccc gagctgcgac tcattgtcag caggcaaaag cgaatcttga
     3181 ggtattggct ataaaggatt gtcctgattt gttaaacgct actgatcatt tgctgattga
     3241 acccataaaa ggacttgaat ttgagcggat tacaaatgtt ttaaagtttt ggcttaaaaa
     3301 aaatagaatt caattgcctt cgtccaagac gtttcatcgt atcattcatg aaataatttt
     3361 tgcaaagctc gatgccatgc caacagtgag ttgggatcaa atacaagtac gtcgtttcca
     3421 acaacatctt tatttgctta aggcagacca gatcaattta ccgaaggcta ttaaatggca
     3481 acaatttcca gcttctttaa cttatccaga cgctgatatt aagttgtctg cagtaaaggc
     3541 ccaaaaggga ttaatgatcc cgaaagatgc gcaaatagaa atacgattca gaaagggtgg
     3601 tgaagagatt tattggcatg gtcaaaccaa acatctaaaa aaactatttc aggaatggca
     3661 aattccccca tgggtaaggg atagagttcc attggtttac attaatgatc aattggcttg
     3721 tgtagtaggt tatgcagtga gcgatttgtt ttttactact aatccactgg aagcttggtc
     3781 tatagttaat aattcttaat ataacaatct ccgctccctt acggtcgtgg ctcggttttg
     3841 actataattc catttgcact cccttatggt cgtggctcgg ttttagctat aattccattt
     3901 aatccacccc cttgtggttg tggctcggtt ttagccataa ttccatttaa taatctgatt
     3961 aatcatctga gccgcgaccg tgaggaagcg gaaaactggt tgttgtacta attttccaca
     4021 gaaaaattta cttcaaaaat aattagttag tgtgataacc ttttcttaca taaacaagtc
     4081 ctaaaccaaa tggaaatggt gaaataatga tatctgaatc agtcatccca ctcgcttatt
     4141 ttattacctt tacctgttat ggaacatggt tgcatggagg caaatcaact tcagttgatt
     4201 actacaataa tataccagga actgaattta tcccttatga tcgaaggcgg ttatatcagg
     4261 taaaaaacct catgctggaa acaccttatt ctctggatga attaaggcgt cacattgttt
     4321 tgcaagcaat ttgtgaagtg tgcggatatc gtcaatgggt attactggct gctcatgtaa
     4381 gatcaaatca tgtgcatctt gttattcatg cccaaccatc tcctgaacgc gttatgaata
     4441 cagtaaaagc atatgcttca cgttatttaa attatacaag actggatggt gatagaaaga
     4501 acagatggac tcgccatgga agtactcgtt atctttggaa tgaggaagaa attgaagcaa
     4561 cgattcaata cgttgtttat gaacaagggt taccaatggc tgtgtttgaa aataaaaaca
     4621 gagtgtttgg agttgaagtt tgatctatcc gctctcggtt ttagttataa ttctatttaa
     4681 cccgctccct tacggtcgcg gctcggtttt agttataatt ccatttaatc cactccctta
     4741 cggtcgtggc tcggttttag ccataattct atttaatcca ctcccttacg gtcgtggctc
     4801 agttttagcc atagttctat ttaatccgct cttacggtcg cggctcggtt ttagccataa
     4861 ttccatttaa ttatctaatt aatcatccga gccgcgactg tgagggagcg gattacgttt
     4921 aaactaaatt atttcttcag ttttttta
//
LOCUS       DACVWI010000198         4894 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.198, whole genome shotgun sequence.
ACCESSION   DACVWI010000198 DACVWI010000000
VERSION     DACVWI010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4894
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.198"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(101..1462)
                     /gene="amrB"
                     /locus_tag="JBH85_12775"
     CDS             complement(101..1462)
                     /gene="amrB"
                     /locus_tag="JBH85_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HAU0947075.1"
                     /translation="MFRSVVVSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAP
                     KAILVPHAGYVYSGAVAASAYASLRDKKDTINKIILLGPAHRLYFKGIAYDPVDKFAT
                     PLGEIDQDKELLTQIIDLPYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVIGET
                     NPQDVARLIARIWGGDDTLLIISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDA
                     ACGYFPLRGFLYFGRQNHVYSRLLDLRNSGDTAGDKERVVGYAAYHFYQKLKFSEHCA
                     DELKYIAKETIRLQTEENKALTINYNDYSQLLQMRVPTFITLKKNGMLRGCMGSLTTK
                     DPLAENIIYNSIRAASADPRFPQIKPCELKELSLTISLIKPLSPLHFDSEEELKSQLQ
                     IGLDGLVLICGPYQATFLPSVWESVKTKDEFINHLKLKMGLSENFWSSEMRALRYATE
                     IIK"
     gene            1498..2592
                     /gene="amrS"
                     /locus_tag="JBH85_12780"
     CDS             1498..2592
                     /gene="amrS"
                     /locus_tag="JBH85_12780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HAU0947076.1"
                     /translation="MIVGYLMFDTIPTKYWHKLEDGRIQCDVCPRNCKLREGQRGLCF
                     VRANLDNQIKLTTYGRSSGYCIDPIEKKPLNHFLPGSPVLSFGTAGCNLACKFCQNWD
                     ISKSRDIDTLADTAMPEDIAKAAQNLNCLSVAYTYNDPVIFMEYAIDVAKECHKLGIH
                     SVAVSAGYINPEPRRELYTYMDSANIDLKSFSEDFYYKITGSHLQPVLDTLIYLKKET
                     SVWFEITNLVIPEENDSDAEFERMSEWIMTNLGPDVPLHFTAFHPDWKMMDKAPTPFS
                     TLQRAREIAIKTGLHYVYTGNVHDTTGSSTYCPHCKLPVIVRDWYRILDYRVDDTGHC
                     LNCHTQIAGVFKGAVGHWGPRRVMVKLGCS"
     gene            2651..3070
                     /locus_tag="JBH85_12785"
     CDS             2651..3070
                     /locus_tag="JBH85_12785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1171 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947077.1"
                     /translation="MRFQDSDFEERYNTMWNKIAVSADVQIRQLFGAKGFFSEQQPNY
                     YQLLANYAQAAKNIVDNLNRQSPMFDDKEYVEGYMIATLQSVYKDFSQYKPRIAGRYG
                     EHSSCVELINKTLDWVQSFDLKLENLSESDDEMKITF"
     gene            3219..4706
                     /locus_tag="JBH85_12790"
     CDS             3219..4706
                     /locus_tag="JBH85_12790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HAU0947078.1"
                     /translation="MQGGMMKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKA
                     EQGDAQAQFELGLKYEKGDGVNKDLKKAIYWYQKAADQGQAEAQNNLGVLYLKGEGVP
                     QNSQQAMYWFKKASEQGLAIGQNNIGILYENGLGVKKDPGQAFIWYQKAAEGGNSDGQ
                     YNLAVMYMYGNGIPKDIKKAIHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAIS
                     WYTRAANEGSLIAQTNLGVLYMTGDPSIQDGKKAIYWYEKAAAQGGEKAQNNLGYIYE
                     QGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGVLYSNDGELQDYKKAYLWFKKAADQG
                     FAEAQNNLGLMYMKGNGLSVNYHEAVLWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDN
                     KLAIKWYQKAAEKGLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINL
                     GIMYLDGMGVNKDFAKAKYWIGKAKDSGSQDALTIWNKNKLWKYQ"
BASE COUNT         1547 a          789 c         1070 g         1488 t
ORIGIN      
        1 ttggcaaaat tgctgatttt atatcttgtt aatctgggct atatgaaaat aatatttggg
       61 gctggattct tatttgagca ttattaatga gtttttcaat ttattttatt atttctgttg
      121 cgtagcgaag tgctctcatt tctgaagacc agaagttttc tgaaagcccc atttttaatt
      181 ttaaatgatt aataaactca tcttttgttt taacagactc ccatacagaa ggtaaaaaag
      241 tagcttgata gggaccacaa attaatacta aaccatcgag accaatttgc agttgtgatt
      301 tgagctcttc ttcactgtca aaatgtaaag gagataatgg tttaattaac gaaatagtta
      361 gtgacagctc ttttagttca catggcttta tttgggggaa gcgtgggtct gcacttgctg
      421 cccgtatgga attgtaaatg atgttctcag ctaatggatc tttagttgtc aggcttccca
      481 tacaacctct tagcatgcca ttctttttta gagtaataaa agtaggaact cgcatctgta
      541 ataattgact ataatcattg taattaatgg ttaatgcttt attttcttct gtttgtaatc
      601 gtattgtttc ttttgcgatg tacttcaatt catctgcgca atgctctgaa aatttaagtt
      661 tttggtagaa gtgataagcg gcatagccta ctactctttc cttatctcca gccgtatcgc
      721 ctgagttgcg taaatcgagc agacggctgt aaacatgatt ttggcgaccg aaatacagga
      781 aaccgcgcag aggaaaataa ccacaagcgg catcgtgaag tatttcttca ccatttaaag
      841 tgtctatgga aaggcaagtc tttttatctt ctctttgggc tatgtgatag ggaagataat
      901 ggcttaaatc agagctgata atcaggaggg tatcatcacc accccatatt cgggctatta
      961 gacgggctac gtcttgagga tttgtttctc caataaccag ggggagtatt ttaaatttgg
     1021 agaatatcat ttggcagaaa ggcaattgta cttccagaca atgttcattt tggtgagctt
     1081 caggaagtga atagacatag ggtagatcta taatttgagt tagcagctct ttatcttgat
     1141 caatttctcc taacggcgtg gcaaatttat caacaggatc ataggcaatg cctttgaaat
     1201 acaatctatg cgcagggcct aatagtatga ttttattgat ggtgtctttt ttatcgcgta
     1261 acgaggcata agcagaagct gctacagctc ctgaatagac ataaccagca tgtggaacca
     1321 gtattgcttt tggagctggc ttatgaattg gtgcttggtc caggaaattc aatacggttt
     1381 gctttaaagt caatggatcg tcaggataaa aatacccagc tacggctggt tgacggacgc
     1441 tcacaacaac actccggaac aactgaacat actatactta taaatataga ctaagagttg
     1501 attgtgggct atttgatgtt tgatactatt ccaaccaaat actggcataa gctggaagat
     1561 gggcgcatac aatgtgatgt atgtcctcgt aattgtaaat tgcgtgaagg gcaaagaggg
     1621 ttatgttttg ttcgtgcaaa cctggataat caaataaaat taactaccta tggccgttct
     1681 agcggttatt gcatagatcc cattgaaaaa aaaccattga atcacttttt gccgggtagc
     1741 cctgtcttat ctttcggaac tgcgggatgt aatctagcct gtaagttttg ccaaaattgg
     1801 gacattagca aatccagaga tattgataca ttggcagata ctgccatgcc agaagatatt
     1861 gcaaaagctg cccaaaacct gaattgccta agtgtggcat atacctataa tgatccggtg
     1921 atttttatgg aatatgccat tgacgtcgca aaggaatgtc ataagcttgg cattcattcg
     1981 gtagcggttt ctgcagggta tattaatcct gagccacgca gggagcttta tacatacatg
     2041 gactctgcca atatcgattt aaaatccttt agtgaagatt tttattacaa aattactggt
     2101 tctcatttac aacctgttct ggatactctc atctatttga agaaggaaac cagtgtatgg
     2161 tttgaaatta ctaatttggt gattccagaa gaaaatgatt cggatgccga gtttgagagg
     2221 atgtctgaat ggattatgac taatctgggg cctgatgttc ctttacactt cactgcgttt
     2281 catccagatt ggaaaatgat ggataaagct ccgactccat tttcaacttt acaaagagcc
     2341 agagaaatcg caatcaagac aggcttacat tatgtgtata cgggaaatgt tcacgataca
     2401 accggcagca gcacttattg tccccattgt aaattacctg tgattgtaag ggattggtat
     2461 cgaatattgg attatcgggt ggatgatact ggacattgct taaattgtca tacgcaaatt
     2521 gcaggagtat ttaagggagc agttggtcat tggggcccaa gaagagtaat ggttaaatta
     2581 ggttgctctt aatcttcaca taataaattt ttagtattat atgccatgtt tttgtacatg
     2641 gtgaattaat atgagatttc aagattctga ctttgaagaa cgttataata caatgtggaa
     2701 taaaattgca gtgtctgctg atgttcaaat acggcaatta tttggagcca aaggattttt
     2761 tagtgaacag cagcccaatt actatcaact ccttgcaaac tatgctcaag cagccaaaaa
     2821 tattgtcgat aatttaaatc gtcaatctcc catgtttgat gacaaagaat atgttgaagg
     2881 ctatatgatt gctactctcc aatcggtata taaagatttt tctcaatata aaccgagaat
     2941 tgcagggcgt tatggagagc actcaagctg tgttgaactg attaacaaga ccttggattg
     3001 ggtacaatcc tttgatttaa aattagaaaa cctctctgaa tctgatgatg agatgaaaat
     3061 tactttctaa ttgcaagcta tcctgtatta tgagaaatct gtaatgcggg atagcaacat
     3121 ttccctatta catcttactc ctatagatgc actttgcttg tgtggcacca gagcgtcaat
     3181 gtttattcat catcaattgt gctataattg aacaatgatt gcagggaggt atgatgaaac
     3241 aattggttgt tgcaggattt ttcttattac ttctaacttc ccctttatca gcgctggatg
     3301 ttgataccta tcgtagttca caaaaacaat tcaatacaga ggataaggcg gaacagggtg
     3361 atgctcaagc acagtttgaa ttagggctca aatatgaaaa gggtgatgga gtaaataaag
     3421 atttaaagaa agcgatttat tggtatcaga aagctgcaga tcaaggacaa gctgaggcac
     3481 aaaataatct cggtgtattg tatcttaaag gagagggtgt gccccaaaac agtcagcaag
     3541 caatgtattg gtttaagaag gcttcggaac agggtttggc aattggtcaa aataatatag
     3601 ggatcctata tgaaaatggc ctgggtgtta aaaaagatcc gggccaggct tttatctggt
     3661 atcaaaaggc cgcagaaggc ggaaattcag acggacaata taaccttgca gtcatgtaca
     3721 tgtatgggaa tggtatacca aaagatatca agaaggcgat tcactggtat atcaaagcag
     3781 cagagcaagg agatcttgat gctcaaaata atcttggtgt tctttatgag cgaggcgaag
     3841 aggttccaag agatttaaaa gcagctatta gttggtatac cagagcagca aatgaaggtt
     3901 cactgattgc tcaaactaac cttggtgtat tgtatatgac tggtgatcct tccattcaag
     3961 atggcaagaa agcaatatat tggtatgaaa aagcagcggc acaaggtggg gaaaaagctc
     4021 aaaataatct tgggtatatt tatgaacaag gaattggtac cgaaaaggat atgaaaaagg
     4081 ctatttactg gtacgaaaaa gccgcagaga atggatttac tctggctcaa aataatttag
     4141 gtgttctcta ttcaaatgat ggcgagctgc aagattacaa aaaggcttat ttatggttca
     4201 aaaaagccgc agatcaagga tttgccgaag cccaaaataa cttgggttta atgtatatga
     4261 aaggtaatgg attgtcagtt aattatcacg aagcagtctt gtggtacaag agagcggcag
     4321 aacaaggatt acctttagcg caacataatc tcgcgattat gtatatgaaa ggcttgggga
     4381 taaagaaaga caataaactg gccattaaat ggtaccaaaa agctgctgaa aaaggattgg
     4441 atctggcgca aaacaatttg gcggttatgt atatacgtgg tgaaggagta aaaagagatt
     4501 ttaagaaggc catgtattgg tatcaaaagg cagctgaaca aggtttggat ttggcacaaa
     4561 ttaatctggg tattatgtat cttgatggca tgggtgttaa taaagatttc gctaaagcaa
     4621 agtattggat tggaaaagcc aaggacagtg gttctcaaga tgcgctgacc atatggaata
     4681 aaaataaatt gtggaaatat cagtgatcat tggtgtgggt cttagttgat gtattgtgca
     4741 aaatgctcaa gtctggttat ataattaaaa tacgctgaat aatctaatgg attagaaaag
     4801 gatgtctgct gctcgccaaa tcaataatcc gaaaatgaga caatggcgaa tattgttggt
     4861 ttacaatatt tacagaatag taagtatttt tcta
//
LOCUS       DACVWI010000199         4880 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.199, whole genome shotgun sequence.
ACCESSION   DACVWI010000199 DACVWI010000000
VERSION     DACVWI010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.199"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1190)
                     /locus_tag="JBH85_12795"
     CDS             complement(<1..1190)
                     /locus_tag="JBH85_12795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HAU0947079.1"
                     /translation="MPSTVIILLIILIAIALRQVVRVIIPIWAIMATGAIAVLLCQQI
                     TPSRAFAAVEPDVMLYLFGVFFISQAAEESGYLTFLTDQIFYYANNGKQTLMLIVFIL
                     GLSSAVLMNDTIAIIGTPIILQLCQSHKNLIKPLLLALAFSITIGSTMSPIGNPQNLL
                     IAIKGEMASPFFEFFKHLAVPTLLNLGIVYFFILFLYRNELKEPIKKPVLPLINDRSN
                     LTLVKMSLLMMLVLTMIKILTDFLHYSEFQLNFSYIALLSSVPIWFSKHRWNYIKRLD
                     WGTLVFFASTFILMQSVWDSGFFQTGMSDSHIDVSHIVVIFIMSIALSQLISNVPLVT
                     IYLPLLMSHNHSNITLLSLAAGSTIAGNLSILGAASNIIIIQNSEKRGIRGFGFLEFI
                     LVGAP"
     gene            complement(1207..2592)
                     /gene="glmU"
                     /locus_tag="JBH85_12800"
     CDS             complement(1207..2592)
                     /gene="glmU"
                     /locus_tag="JBH85_12800"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase"
                     /protein_id="HAU0947080.1"
                     /translation="MNLQIIILAAGQGKRMYSDTPKVLHHLAGKPLLTHVVETAQQLN
                     PDAIHVIYGHGGEQIKSSLPNLPVHWVHQAEQLGTGHAVLQAMPHIPDDAYVLVLSAD
                     VPLIQVETLQSLIECSQRQNPDHSVLALLVAELENPSGLGRIIRNNQGEIYSIVEEKD
                     ANEQVKNIKEIYSGVCCTLANNLKKWLPQLSNSNAQGEYYLTEIISLAVQNKTPITSL
                     TAKNSFEVQGINNRQQLQQLERIWQQRAANQLMEKGVTLADANRFDLRGKLYCGKDVY
                     IDINCIFTGKVVLGNGCKIGPNCSLTNVTLGDGCEVYANSVLEGCHIANDCHIGPFAR
                     LRSGTQLAPHCKIGNFVETKKAIFDEGTKASHLSYLGDVLLGKNVNVGAGTITCNYDG
                     VNKHQTIIEDGVFIGSDTQLVAPVTVGANATIGAGSTIRRNVPPDELTLTESRQKTIY
                     GWKRPVKRERD"
     gene            2714..3598
                     /locus_tag="JBH85_12805"
     CDS             2714..3598
                     /locus_tag="JBH85_12805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2874 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947081.1"
                     /translation="MNIFLKVLKKLMKEKLSELSANLKWKSETIGYNTKLSIDQKNVI
                     DKLEESIVLFKDSGNDEADLLSINALIDAARIQIQSIRESYGEPRDKGESVTCLNNLK
                     NHSNDFLGKLKKFDFDLLNKAYTETPENIVYYHAAIYLGDEIFSPRTGIDYEIRTKKE
                     VQLAVRLQALSERINPSHNLEEQRKRALQVLQDLAQDNQNAIKKDKGFSLPGLSFWGV
                     SVVTPSDWFSSGEGRFGVEFNTAVRTIQGMTESQFERPTVKQTTAKQEETKPSDVKKT
                     EATDEEDEEHSSENTHTL"
     gene            complement(3696..4706)
                     /gene="ansA"
                     /locus_tag="JBH85_12810"
     CDS             complement(3696..4706)
                     /gene="ansA"
                     /locus_tag="JBH85_12810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HAU0947082.1"
                     /translation="MKKRVLIINTGGTISSIKTSHGYEPSPGFIQKALADIPALKHQD
                     MPDYVIKEYQPLLDSSNMTVTEWNRIARDIAHEYEQFDGFVVLHGTDTMAYTASALSF
                     MLEYLGKPVIVTGSQIPLSEIRNDATDNLITSLWLCAHQPIHEVCIYFNQHLFRGNRT
                     QKISAQRFNAFDSPNYPPLASIGIDIELHQHRLLPRPKAPFHLQTITPHFIANFRLFP
                     GFASDVLEYILNQPLRGLILETYGAGNAQNNDPRFLSLLKEACGRGVIIINCTQCHQG
                     KVEMNQYATGHTLKEAGLISGHDMTPEAAHCKLLYLLSKNLEIPEIKKLIETNLCGEL
                     QI"
BASE COUNT         1536 a          941 c          984 g         1419 t
ORIGIN      
        1 ggggctccca caagtataaa ctccagaaac ccaaaacccc tgataccacg tttttcacta
       61 ttttgaataa taataatgtt acttgctgcc cccaggatag agagattacc ggcaatagta
      121 cttcccgcag ccaggctcag cagggttata ttggaatgat tatgactcat caataaaggc
      181 aaatatattg ttactaatgg gacattagag atcaattggc tcagggcgat actcattata
      241 aaaatcacca cgatgtggct aacatcaata tgagaatcac tcattccggt ttggaaaaag
      301 ccgctatccc atacgctttg cattaaaata aaggtgctcg caaaaaaaac taaagttccc
      361 caatccagtc tttttatata attccatcga tgcttgctaa accaaattgg tacagacgac
      421 aagagtgcaa tataactaaa attgagctga aattctgaat aatgcaggaa atccgtcaag
      481 attttgatca tagtcagaac taacatcatg agcaagctca ttttaactaa agtaagatta
      541 ctacggtcat ttatcaaagg gagaactggt tttttaatag gttcttttaa ttcatttctg
      601 tataaaaaaa gaataaaaaa ataaactata cccagattta acaaagtagg tacagccaag
      661 tgtttgaaaa actcaaaaaa tggcgaggcc atctctccct taatagcaat caataaattt
      721 tgtggattgc ctataggact catggtgctt ccaatagtaa ttgaaaatgc caatgccaac
      781 agcaagggtt taattaaatt tttatgtgat tgacacagtt gtaaaatgat aggtgtacct
      841 ataatggcaa tggtatcatt cattaacacc gcggagctta aacccagaat aaaaacaatc
      901 aacattaacg tttgttttcc attattcgca taataaaaaa tttgatcggt cagaaaagtg
      961 aggtagccac tttcctctgc agcttgtgaa atgaaaaaaa caccaaacaa ataaagcatg
     1021 acatctggct ccacggcagc gaaagcgcgt gatggcgtta tctgttggca gagcaaaaca
     1081 gcaatggctc ctgttgccat aattgcccaa attggaatga taactctgac aacctgccgt
     1141 aaagcaattg caataagaat aatcagaaga atgatgacag tagaaggcat ttctgtcctc
     1201 ttttatttaa tccctctccc tttttaccgg ccttttccag ccgtagatgg ttttttgtcg
     1261 tgattcggtt aatgttaact catcgggcgg cacattccgg cgtatggtgc tccctgctcc
     1321 tattgttgcg ttagcgccca cggtaactgg agcaactaat tgagtatctg acccaataaa
     1381 aacaccatct tcgataattg tttgatgctt attaacccca tcgtaattac aagtaatggt
     1441 tccagcgcca acgtttacat tttttcctaa caggacatcc cctaagtaac tgagatgact
     1501 ggctttcgtg ccttcatcaa aaatcgcttt tttagtttca acaaaattac cgattttaca
     1561 atggggagct aattgcgtcc ctgagcgcaa gcgggcaaaa ggaccgatgt ggcagtcgtt
     1621 tgcaatgtgg cagccttcca gtacgctatt agcgtaaact tcacatccat cgcctaatgt
     1681 gacattagtc agactgcagt ttgggccaat tttacagcca ttacctaaaa ctaccttgcc
     1741 tgtaaaaatg cagttaatgt cgatatagac gtctttgcca caatataatt ttcctctcaa
     1801 atcaaagcgg ttggcatcag ccagggtcac gcctttttcc atgagttgat tggctgctct
     1861 ttgctgccag atgcgctcaa gttgctgaag ttgttggcga ttattaatgc cctgcacctc
     1921 aaagctgttc ttggcggtta atgacgtaat gggtgtttta ttttgtacag ccaatgagat
     1981 aatttcagtt aaataatatt cgccttgtgc gttactatta cttagttgag gcaaccattt
     2041 cttcagatta tttgccaaag tgcaacacac cccggaataa atttctttta tattctttac
     2101 ttgctcattt gcatcctttt cttctacaat gctataaatt tcaccttggt tgtttctgat
     2161 aatacgccca agaccgcttg gattttccag ttctgcaacc aggagtgcta aaacagaatg
     2221 atctggattt tgacgttggc tgcattcaat taatgattga agagtttcca cttgaatcag
     2281 gggaacatcg gcagataaaa ccagaacgta tgcatcgtca gggatatgtg gcatggcttg
     2341 caaaacagca tggccagtcc ctagttgctc tgcctgatgc acccaatgaa caggtaagtt
     2401 ggggagtgaa cttttaattt gttcaccacc atgaccataa atgacatgaa ttgcatcggg
     2461 atttagttgc tgagcggttt ccacgacgtg ggttaacagc ggtttgccag ccaggtggtg
     2521 aagaactttg ggcgtgtccg aatacattct tttaccttgc cctgcagcta aaataataat
     2581 ttgtaaattc atgagatttg tgttttccta agttaaatat cataatcggt gctgatttaa
     2641 acagtctgcc ccaatgttat gaatgatgta aagagctata tgataaataa gttgcagtta
     2701 aaggagtaga gcaatgaata tatttctaaa ggttttaaag aaattaatga aggaaaaatt
     2761 gagtgagtta tccgccaatt tgaaatggaa gtcagaaacc attgggtata ataccaaatt
     2821 atcaatcgat caaaagaatg tcattgataa actcgaagaa agtatcgttc tttttaaaga
     2881 ctcaggtaat gacgaagcag atttgctgtc aatcaatgca ttgatagatg ctgccagaat
     2941 acaaattcaa tccataagag aatcctatgg tgagccgaga gataaagggg aatctgtaac
     3001 ctgtctcaat aatttgaaaa atcattccaa cgattttctt ggcaaactaa agaaatttga
     3061 ttttgacctg ttaaataaag cttatacaga aacacctgaa aatattgtct attaccatgc
     3121 cgctatctat ctgggagacg aaatttttag ccctagaaca gggatagatt acgaaatccg
     3181 cactaaaaaa gaagtgcaat tggcagtaag gctgcaggca ttaagcgagc gaattaatcc
     3241 aagccacaat ttggaggaac aaagaaaaag agccctgcaa gtgttgcaag atcttgctca
     3301 ggacaatcaa aatgccatca agaaagataa aggtttttct cttcctggtt taagcttttg
     3361 gggtgtttca gtagttacac catcggattg gtttagctca ggagaagggc ggtttggcgt
     3421 tgaatttaat acggcagttc gcaccattca gggaatgact gaaagccagt ttgaaagacc
     3481 gacagtaaaa caaacaacgg caaagcaaga agagaccaaa ccatccgatg taaaaaaaac
     3541 agaggcaaca gacgaggagg atgaagaaca ttcatctgaa aatactcata cattgtaagt
     3601 tactttcaat gggtgtattt tgatttctct gcctcgaatg catacgagag gtctccaaaa
     3661 gatatattct gttggagcaa ggagatccct cgttcttaaa tctgcagttc accacacaaa
     3721 ttggtttcaa tcagtttttt gatttcaggg atttccagat tcttgcttaa taaatacagc
     3781 aatttgcaat gagccgcctc aggtgtcata tcatgaccgc taatcaagcc tgcttctttt
     3841 aaagtatgtc ctgttgcgta ttgattcatt tctactttcc cctggtggca ttgggtgcaa
     3901 ttaataataa taacccccct gccgcaagcc tccttaagca aacttaaaaa tcttggatca
     3961 ttgttctggg cattacctgc cccataggtt tcaaggatta aaccccgcaa aggttgattt
     4021 aaaatgtact caagaacatc agaggcaaag cctgggaaca gacggaagtt tgcgataaag
     4081 tgaggagtaa tggtttgtag atggaacggt gctttgggac gtggcaataa acggtgttga
     4141 tgtaactcga tatcgatacc aatcgatgcc aagggtgggt agttgggcga atcaaaagca
     4201 ttgaagcgtt gggcactgat tttttgagtg cgattgcctc gaaacaaatg ttgattgaag
     4261 tagatgcata cttcatggat aggttgatga gcacaaagcc ataaggacgt aatgagatta
     4321 tctgtcgcat cgttacgaat ctcggataaa ggaatctgtg aaccagtgac tatgacgggt
     4381 tttcccaaat actccaacat aaatgacaaa gcggaagcag tgtaagccat ggtatcagtg
     4441 ccatgtaata caacaaatcc gtcaaactgt tcatattcgt gagcaatatc tctggcaatc
     4501 ctgttccatt ccgtgacggt catattagag gaatcaagta gcggctgata ttctttgata
     4561 acgtagtcag gcatgtcttg atgttttaga gcaggaatgt ctgccaacgc tttttgaatg
     4621 aatcctggtg aaggctcata accatgcgat gtttttatgc tactgattgt gccgccagta
     4681 ttgataatta aaactcgttt tttcatgcgg atttataatc aatgatttat tattgtttcg
     4741 ataagtatag cgaaaacttg gctataccaa taacaactaa tttcaagact tgcgaaaagc
     4801 cccaatctct ttggtaaaaa agtgtttaat tcggtcattt agtttataga aattccctcg
     4861 ttaaaaacat taaagttacc
//
LOCUS       DACVWI010000200         4877 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.200, whole genome shotgun sequence.
ACCESSION   DACVWI010000200 DACVWI010000000
VERSION     DACVWI010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4877
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.200"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            17..1639
                     /locus_tag="JBH85_12815"
     CDS             17..1639
                     /locus_tag="JBH85_12815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2527 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947083.1"
                     /translation="MSYQKIELSISLSLDSPKLDESDFILLSVKYLEKSLGKKKEFSG
                     FFEDIEKLYFKQNYKEAIEKILDFCKKNESLLSEQVVQRLAEVAPRLKSNPKDNESRR
                     LYETLYADHLESVIKQESDLSVFNELRDSYNAVKPEYAVTHETEIKTLDEAKQFILSF
                     VMLNDNVELPLKAQSERYPKKDRSREELGNTPSANPGIMKPNSPNFTDNLVPVRDVPK
                     IAINEKVAGGYSKTKPTTPFVASLSGTTYSLMVVLTDYIEKHKTDKDIEKKVNQIINL
                     WISSYIKEGYHSYSEVVDVLTEPFLQSIFDKANIKLNYGVLDDTHAEFRKAQDYVFGL
                     TIQSAMHHELQERFKNKEKLQEEVKNFESGLNKLNQNVENTGRHREALNKLNEVFQDW
                     SAGKKSYDAFKSESNQLIHDIESEEQKSNRGLGSMLKNLGNYLLYLITLRFLKEDYPK
                     PSSPVTMLVTELRGTLEQIDHFHKTSLSLKKATQPDPKNTSSSDETADVRKSAVDTDK
                     PSKNQDSEVKKTLDSEQLEEVQRQDDKSARLQ"
     gene            1946..3313
                     /gene="mavL"
                     /locus_tag="JBH85_12820"
     CDS             1946..3313
                     /gene="mavL"
                     /locus_tag="JBH85_12820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavL"
                     /protein_id="HAU0947084.1"
                     /translation="MRLFQYNQHICRGRFPVSNAYCKDFVVRNINTIFGLSENIMAYQ
                     LLLSKETLNKILQYKQNLEKGLATPGKFFLEELSKQEKSISEMDITTFTQLLIQSKKP
                     QVFAESQVYHDGTDWTLEEESILGDVSVNMPVTMYNDGGHGSSFKNHPKPISGYLAYV
                     PGALLASGSGPTSDMKEVLDNGKLNQDKLNALYERRLLPQLIHFNELARQNEKQAAIT
                     IPGIGTGCFSGAYYDVIKPYVRNALIHILEKHKDSLPYIDIIHYDPYMGDEPAEKKIG
                     HMSFRVSPSGVVRGTTGQLDYPLGSNPDTHILVSIVAWDHFSWPGNDYWGGARQTDDG
                     VKAASTDTMGQVTGATGVYDKKWGRYMPPESFTKDRKGMSDWGDYVRENGIVFNGPVL
                     ALDKSGKLDTLENVASRSSKAKVETTTTISDLVRSMFSLFSHSTTTEPSPTVKEEESK
                     KSGPQ"
     gene            complement(3594..>4877)
                     /locus_tag="JBH85_12825"
     CDS             complement(3594..>4877)
                     /locus_tag="JBH85_12825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2525 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947085.1"
                     /translation="EIFADKNLDIQNIIVVSMVCKLWYELSLDNAVWRPLFIKRFSYS
                     PTLANHSIFKEDYQKQLALTQAMKKKCESNHACRNEPGLLEAIREKNIPLIYALFESG
                     HRIIIDSFPDGEQQFTEEMLGFLSECAELPSSLLARIFKRGFCTADMETSEFLALHFI
                     VAEADEKLLQKIFRALGDDLLSVSRYCDLYDNNFFSSLLHFPVERFSLVLRLLYETLG
                     KTKLSTLLVYQNHTYTDWSCIHSASRCGREYFFITLKYLKRQDYPVLLKKGLNDEDIP
                     LFNIAYWGDKESLSHIINILGADATTFLKYKDNKGRNILLPALLSEDHSTVELIEKVM
                     GMEFIDLLLMQDTNGRDILRRVMLLQEPTVLRRINTVLKLLRDYDCLDIAQELYSSDE
                     FTQLISQNLYINQDETIELFNKYTEEKTNNFCSIL"
BASE COUNT         1620 a          837 c          931 g         1489 t
ORIGIN      
        1 atttagcaga tatcctatgt cataccaaaa aatagaactc agtatttcat tatcattaga
       61 ttctccaaaa ttagatgagt ctgattttat attgctctca gttaagtatc ttgaaaagtc
      121 acttggcaaa aagaaagagt tttctggttt ttttgaagac atagaaaagc tctattttaa
      181 gcagaattac aaggaagcaa ttgaaaaaat attggatttt tgtaaaaaaa atgaatcctt
      241 gttaagtgag caagttgtcc agaggctggc agaggtcgct cccagattaa aaagcaatcc
      301 taaagacaat gaaagcagaa ggctttatga aaccttgtat gcagatcacc ttgaatcagt
      361 cattaaacaa gagagtgatc tttccgtatt taacgaattg agagacagtt ataatgcggt
      421 gaaacctgag tatgcagtaa ctcatgagac cgaaatcaaa actttggatg aagcaaagca
      481 atttatttta tcttttgtca tgctgaatga taatgttgaa ttacctttaa aagcacaatc
      541 agagagatac ccaaaaaagg acagatccag agaagagttg gggaatactc catctgcgaa
      601 tccagggatt atgaaaccta actcacctaa ttttaccgat aacctggtgc ctgtcagaga
      661 tgtgcccaaa atagccatta atgagaaagt ggcgggtggg tattcaaaaa ctaagcctac
      721 tactcctttt gtggcgtcgc tgtctggcac aacctactca cttatggtgg tgttaacgga
      781 ctatattgaa aagcataaaa cagataaaga cattgaaaaa aaagtaaacc agattattaa
      841 tttatggatt tccagttata tcaaggaagg ttatcacagc tacagtgagg ttgtggatgt
      901 tttgacagag ccgtttcttc aatccatttt tgataaagca aatattaaat taaattatgg
      961 tgtacttgac gacacgcatg cagaatttcg taaagctcag gattatgttt ttggtttgac
     1021 aattcaatca gcgatgcatc atgagttaca agagcgattt aagaataaag aaaaacttca
     1081 ggaagaggta aagaattttg aatctgggtt aaataaactc aaccagaatg tcgaaaatac
     1141 aggtcgccat cgcgaggcac tgaataaatt aaacgaggta tttcaggatt ggtctgcggg
     1201 caaaaaaagc tatgatgctt ttaaaagtga gtctaatcag ctgattcatg atattgagtc
     1261 tgaagaacaa aaaagtaatc gtggtcttgg ctccatgctg aagaacctcg ggaactatct
     1321 tttatacttg attacccttc gttttttgaa agaagactat ccaaaaccgt ctagtccggt
     1381 cacaatgtta gtcactgaat taagaggcac acttgagcaa atagatcatt ttcataaaac
     1441 cagcctttct ttaaaaaaag caacgcagcc tgaccctaaa aatacttcat catctgatga
     1501 gacagcagat gttcgcaaat cagctgttga tactgacaag cctagtaaaa atcaagacag
     1561 tgaagtgaaa aagacactag attctgagca attggaagaa gttcaaaggc aagatgacaa
     1621 aagcgctcgt ttacaataga tctcttgcat aaccagcgcg caaatgtttc tgcggtgctt
     1681 gtatgtaaac tacacgcctc gaaatgtttg tgccttgccc taaaataatc agcttaggca
     1741 agaaggctaa tgatgcatct aattaaaaag tttttaaatg actaaaaaag tatttgcaat
     1801 aaaactagac agttatatat ttatcaagcc atattccagt tttgaaaacg gtataccagg
     1861 ttttcactga ttggaatagc agctattatg tgttattatt atacgcatat tggtcaatta
     1921 aattcctttt gttgaggcaa taggtttgag attgtttcag tacaatcaac acatctgtag
     1981 gggaagattt ccagtaagca atgcttattg taaggacttc gtggtaagaa acattaatac
     2041 aatttttgga ttaagtgaga atataatggc ctatcaattg ttgctcagta aagaaaccct
     2101 gaataaaatt ttacaataca aacagaacct cgaaaaaggg cttgccacgc ccggtaaatt
     2161 ttttcttgaa gaattaagta aacaagaaaa aagcatctct gaaatggata ttactacatt
     2221 tactcaactg ttaatccagt ctaaaaaacc acaggttttt gctgaaagtc aggtttatca
     2281 tgatggaact gactggacac tggaagaaga gagcattctt ggggatgtta gtgtcaatat
     2341 gccagtcact atgtacaatg atggtggaca tggctcctct ttcaagaatc acccaaagcc
     2401 aatttccggt tatttggctt atgtgccagg agcgctcttg gcttcgggca gtggaccgac
     2461 ttcagatatg aaagaagtgc tagacaatgg caaactaaat caagacaaat taaacgcttt
     2521 gtatgagaga cgtttgttac ctcaattgat ccattttaat gagttagcgc gacaaaatga
     2581 aaagcaggca gcaattacta ttcccggtat aggaacaggg tgtttttcag gcgcttatta
     2641 tgatgtgatt aaaccctatg tcagaaacgc attaatccat attcttgaga aacataaaga
     2701 ttcgttacct tacattgata tcattcatta tgacccttat atgggagatg aacctgctga
     2761 aaagaagatt ggtcatatgt cttttcgtgt gagtccttct ggtgtggttc gtggcacaac
     2821 ggggcaactt gactacccct taggtagcaa tccagatacg catatcctcg tttcaattgt
     2881 tgcctgggat catttttcct ggcccggaaa tgattattgg ggcggtgctc gtcaaacaga
     2941 tgatggtgtc aaggccgcta gcacggatac catggggcaa gttacaggcg caactggtgt
     3001 ctatgataaa aaatggggtc gatatatgcc tccagaatca tttactaaag accgtaaagg
     3061 tatgagtgac tggggggatt atgtcagaga aaatggcatt gtatttaatg gccctgtttt
     3121 agctctggat aaaagcggta aattggatac cttggaaaat gttgcaagtc gttcctccaa
     3181 agcaaaagtt gaaactacaa ctacaataag tgaccttgtg cgtagtatgt tcagtctttt
     3241 ttctcatagt actacgacag agccatctcc aactgttaaa gaggaagaat cgaaaaaatc
     3301 gggtcctcag taataatttt gacaaattct tatagggtaa caatgggtct gacttttgag
     3361 gttggactct gttactactt gcaggactta ccaacttgac gtggtcaagt tatgtgtagt
     3421 ttcatgaaag attgaataat agtatggagc ctctgctatt ttgaataaat cgtaacaatt
     3481 tcattctggc ttattacgag gcatttttaa attggcagga tacatctatt atttcgagat
     3541 gcaacttcga atcttcttca atgataaagt acgttcatat atttattcta attttataaa
     3601 atagaacaaa aattgtttgt tttttcttct gtatatttat tgaataactc tatggtttca
     3661 tcctggttga tatataaatt ctgagatatg agttgggtaa attcatcact gctatatagc
     3721 tcctgagcaa tgtccaggca atcataatca cgtaatagtt taagtactgt attgatgcgt
     3781 ctcaatactg taggttcctg aagcaacatg actcgtctca aaatatcgcg gccatttgta
     3841 tcttgcataa gtaacaaatc aatgaattcc atccccatca ctttttcaat taattcaact
     3901 gttgaatgat cttcactcaa caatgcgggc aataagatgt tacgtccttt attgtccttg
     3961 tatttaagaa acgttgttgc gtcagctccc aaaatgttaa taatgtgaga taaagactct
     4021 ttatcgcccc aatatgcaat attgaataaa ggaatatctt catcatttaa tccttttttc
     4081 aataatacag gataatcttg ccttttaaga tatttgagag taatgaagaa atattctcta
     4141 ccacatctac ttgcagaatg aatgcaactc caatcagtgt aagtatggtt ttggtacact
     4201 aaaagagtac tcagttttgt ttttcctaaa gtttcgtaga gcaatctcag tactaatgaa
     4261 aatcgttcta caggaaaatg taatagagag ctaaaaaaat tgttatcata aagatcacaa
     4321 tagcggctaa ctgataataa gtcatcacct agagctctaa atattttttg taatagtttt
     4381 tcatcagctt ctgcaacaat gaaatgtaat gccaaaaact cactggtctc catgtctgct
     4441 gtgcaaaaac cacgtttaaa aattcttgcc aataaggaac ttggtaattc agcgcattct
     4501 gataaaaaac caagcatttc ttcagtaaac tgttgttcgc catcaggaaa actatctatg
     4561 ataattcgat ggccagattc aaataaggcg tagatcaaag gaatgttttt ttctctaata
     4621 gcctctagta atcctggctc attcctacat gcatgatttg attcacattt ctttttcatt
     4681 gcttgagtta aagccaattg tttttgataa tcctctttaa agattgagtg gttagctaaa
     4741 gttggtgaat aggaaaatcg tttgataaat aaaggcctcc aaacggcatt atcaagtgat
     4801 aactcatacc aaagtttaca aaccatgctg acaactatga tattttgaat gtctaaattt
     4861 ttatccgcaa aaatttc
//
LOCUS       DACVWI010000201         4854 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.201, whole genome shotgun sequence.
ACCESSION   DACVWI010000201 DACVWI010000000
VERSION     DACVWI010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4854
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.201"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1119
                     /gene="bamB"
                     /locus_tag="JBH85_12830"
     CDS             <1..1119
                     /gene="bamB"
                     /locus_tag="JBH85_12830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HAU0947086.1"
                     /translation="LTQGCTYVDDYMLGKDNTPQPKELKEIQPKVKMAQSWTTPVGKA
                     HKTNEYLNIKPAIRGDIIYTADASGLVQAVNRKDGQIKWSTALKNNIVSGPTVAAGYV
                     AVGTNASTLVLLNQSDGKEIWQNKVSAEVLAPPAISHQKVIAKTIDGKVYAIDAVNGK
                     QLWVADHGAPSLVLKASSSPIIVDNLVLVGFSDGKLDALELQTGRLIWQRSIAYGTGA
                     SDVERLVDIDSDPIISNNVAYLATYQGYVGALSLSDGQFIWRKPASVYKNMLLSHNNL
                     YFTDSNDVLWSLNSSTGQVNWKQTSLKARGLTAPALVGGNLAVGDKTGYLHILSTQTG
                     ELLGRSQLSGGVTVSPSVSGKNMYVLTNNGMLNQLSVS"
     gene            1124..2512
                     /gene="der"
                     /locus_tag="JBH85_12835"
     CDS             1124..2512
                     /gene="der"
                     /locus_tag="JBH85_12835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HAU0947087.1"
                     /translation="MIPVIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGH
                     AQHENKSFIIVDTGGIGVDDIEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQI
                     AQALRKFNKKVHLVVNKTDGMNEDIACADFQSLGITDIHAISASHGGGISSLLEEILE
                     PFTTETHEATDDKAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRDSISIPFT
                     REDKQYVLIDTAGVRRKSRIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGITDQDMN
                     LLGFIIESGKALVIAVNKWDGLEEDHKEKIKSELSRRLHFANFAKIRFISALHGSGVG
                     GLFKDINEAYHSAIQSFSTPKLTRLLQDISAKHTPPCINGRRIKLRYAHLGGHNPPVI
                     VIHGNQLDALPESYKRYLNNEFIKHLGLVGTPLKIEFKGGQNPFANKKNKLSQRQVNK
                     KKRLMRWAKSKK"
     gene            complement(2577..2999)
                     /locus_tag="JBH85_12840"
     CDS             complement(2577..2999)
                     /locus_tag="JBH85_12840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HAU0947088.1"
                     /translation="MYTNILFATDLLNEHSHLTEKAANIAKQFNAKLYLLHVIELPTS
                     ILIAQGLGFTELANPSKEDAQTVLSLIGESLQIPQEQQFVEIGSVKEHILNKAKDLNC
                     QLIIIGSHSATGLPSILGSTAHAVVNHSVCDVLTLKAD"
     gene            complement(3054..3479)
                     /gene="folK"
                     /locus_tag="JBH85_12845"
     CDS             complement(3054..3479)
                     /gene="folK"
                     /locus_tag="JBH85_12845"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HAU0947089.1"
                     /translation="MNVCYLSLGSNQKNPERQIRQAINEIKQIPSTCLIKVSRLYWNK
                     AWGFENQQEFCNVVIEIRTTLLPHKLLKWCQKIENRHKRVRRKFWGPRTLDIDIILYG
                     YRLIRTKNLIVPHPCFHLRDFVLVPLRELNSNLKIPNYT"
     gene            complement(3476..4786)
                     /gene="pcnB"
                     /locus_tag="JBH85_12850"
     CDS             complement(3476..4786)
                     /gene="pcnB"
                     /locus_tag="JBH85_12850"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HAU0947090.1"
                     /translation="MLRRNRSHGHAIDLAYIIPRNKHNISKADISNNALKVLNRLISH
                     GFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKNARIIGRRFKLVHILFHRE
                     IIEVATFRGHNSSDASHQFNERGMLVRDNVYGSLDEDAWRRDFTINSLYYNISDSSII
                     DFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISH
                     LITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSHYPVNPLLG
                     IALENTDTRIRDGKPVTPAFLIAVLLWFPMIECSRKLQESGLPPLPSIEKAMSIVLSE
                     QNAIISIPKRYSQVIREIWLLQYRFEKRFGGRAFNLLLHPRFRAAYDFMALRALSGDE
                     SMELAQWWATFQEVDNVEKNNMVTQLAATTPGRPKKRRKRKIAK"
BASE COUNT         1545 a          876 c          947 g         1486 t
ORIGIN      
        1 ttaactcaag gatgcacata tgtggatgat tatatgctcg gtaaggataa tacgccccaa
       61 cccaaagagc taaaagaaat tcagcccaag gttaaaatgg cacaaagctg gacaactcca
      121 gttggaaagg ctcataaaac aaatgagtat ttaaatatca aaccagctat tcgtggcgat
      181 ataatttata ctgcagatgc aagtggactg gttcaggcag ttaacaggaa agatggtcag
      241 ataaagtggt ctaccgcatt aaaaaataat atagttagtg gaccaactgt agctgctggt
      301 tatgttgctg taggaactaa tgcctccaca ttggtactac ttaatcaatc ggacggaaaa
      361 gagatatggc agaataaagt atctgctgaa gtattagctc ctcctgctat ctcacatcaa
      421 aaggtcattg caaaaaccat tgatggtaaa gtgtatgcga ttgatgcggt aaacggcaag
      481 caactgtggg ttgcagatca tggcgctccc agcctggtgt taaaagccag ctcgtcccct
      541 atcattgtcg acaatctggt tcttgtcgga ttttccgatg gcaaattaga tgctttggaa
      601 ttacagaccg gacgattgat ctggcaaaga agcattgctt atggaacagg agctagtgat
      661 gtcgaacgtt tagttgatat tgattctgac cctataataa gcaataacgt cgcctatttg
      721 gcaacttatc agggatatgt tggagcacta tcactgtctg atggccaatt catatggaga
      781 aagccagcat ctgtttataa aaatatgctt ttaagtcata ataatctgta ttttacggac
      841 agcaatgatg tcttgtggtc tttgaatagt agcacaggac aggtcaactg gaagcaaacc
      901 tccctaaagg caagaggtct tactgcacct gcattagttg gaggaaattt agctgttggt
      961 gataaaacag gatatttaca tatcctatca actcaaacag gtgagttact tggacgttct
     1021 cagctttctg gtggagtaac agtatcaccg agtgtttctg gtaaaaatat gtatgtatta
     1081 accaataatg gaatgctcaa tcaactttca gtgagctaat aaaatgatcc ctgttatcgc
     1141 tttagttggg cgtcccaatg ttggaaagtc tactttgttt aatagaatta ctaaaacgca
     1201 ggatgctctt gtcgcagatt ttcctggctt gacaagggat agacaatatg gacacgctca
     1261 acatgaaaac aagtccttta ttattgttga taccggaggc ataggagttg atgacattga
     1321 agtagatact ttgatgtcaa gacagtctca agttgcttta aacgaagcaa atgtgattct
     1381 tttcttggtg gatggccgtt caggactaac aggtatagat cagcaaattg cacaagcatt
     1441 aagaaaattt aataaaaaag tacatcttgt tgtcaataaa acagatggaa tgaatgaaga
     1501 tattgcttgt gccgattttc aatcattagg cattactgat atacatgcta tatctgcatc
     1561 tcatggtgga ggcatcagtt cactactcga agaaattctc gagccattta caacagaaac
     1621 gcatgaagca actgatgata aagcgatcaa aattgctttt gcggggcgcc ctaacgttgg
     1681 aaaatcaact ttgataaaca ggatattagg ggaagaaaga gtagttgttt atgatatgcc
     1741 cggaacaact cgagatagta tttcaatacc ctttacaaga gaagataagc aatatgtgct
     1801 tattgatact gctggtgtac ggcgtaagtc tcgaattgat gaaaaaatag aaaagttttc
     1861 tgtcatcaaa actctgcaag ctataaaaga agctcatgtc tgtttgttac ttcttgatgc
     1921 aaatgaaggc attaccgatc aagatatgaa tttgctcggt tttattattg aatctggtaa
     1981 agcactagtt attgctgtga ataaatggga tggcctggaa gaagatcata aagaaaaaat
     2041 aaagtcagaa ctgtcaagaa ggttgcattt tgcaaatttt gcaaaaataa gatttatttc
     2101 agcattgcat gggagcgggg taggtggatt atttaaagat attaatgaag cctatcattc
     2161 agcaatacaa tccttttcta ctccaaaact aaccagatta ttacaagata tcagcgcaaa
     2221 gcatacacca ccatgcatca atggccgacg aataaaatta cgctatgctc accttggcgg
     2281 acacaatcct ccagtcattg ttattcatgg aaatcaactc gatgccttgc cagaaagtta
     2341 taaacgttat ttaaacaatg agtttattaa gcatttagga ttagtaggta ctcctttaaa
     2401 aatcgagttt aaaggaggtc aaaatccatt tgccaataaa aaaaataaat tatcacaaag
     2461 gcaagtgaac aagaagaaac gattaatgcg atgggcaaaa agcaagaaat agcactccgg
     2521 ttcacctcag ccaggtttaa attgttctaa tgaaaaaagg tactaatctc ttcttattaa
     2581 tctgctttga gtgttaatac atcacaaacc gaatgattta ctacagcatg cgctgtactt
     2641 cctagaatag acggtaatcc tgtagcagag tgtgagccta ttataattaa ttggcaattc
     2701 agatcttttg ctttgtttaa tatatgttct tttacggacc cgatttctac aaattgttgt
     2761 tcctgaggta tttgtaaact ttctccaatt aatgataata cagtctgggc atcctctttt
     2821 gatgggttag ctagctccgt aaaacccaat ccttgagcta ttaatatact tgttggcaac
     2881 tcaatcacat gtaatagata caattttgca ttaaactgtt tagcaatatt agcagccttt
     2941 tctgtaaggt ggctatgctc atttaacaaa tctgtggcaa ataaaatatt tgtatacatg
     3001 ttaacctcat tttaaataga atcattaagt tatagtgtag tagattatga tatctatgtg
     3061 taatttggta tttttaaatt agagtttaat tctcttagag gaacaagaac aaaatctcgt
     3121 aaatggaaac aaggatgtgg aacgattaag ttttttgtgc gaattaatct ataaccatat
     3181 aaaatgatat caatatctaa tgttcttggc ccccaaaact ttctcctgac tcgcttgtgc
     3241 ctgttttcta ttttctggca ccacttaagg agcttatggg gtaacagagt agttcgtatc
     3301 tctataacga cattacaaaa ttcctgttga ttttcaaagc cccaggcctt attccaatat
     3361 aagcgagaca ccttgataag gcatgttgat ggaatctgtt tgatttcatt aatggcttgt
     3421 cttatttgac gctcaggatt tttttgattc gatcccaagc tcagatagca aacattcatt
     3481 ttgctatttt ccgtttacga cgttttttag gccgcccggg cgttgttgca gccaattggg
     3541 ttaccatgtt atttttttca acattatcga cttcttgaaa cgtggcccac cactgcgcca
     3601 gctccattga ctcatcacca gataatgccc taagagccat aaaatcatac gctgctctga
     3661 atcgaggatg aagaagtaaa ttaaatgctc tgccaccaaa tcttttttcg aagcgatatt
     3721 gcaaaagcca aatttccctt ataacctggc tatacctttt aggtatcgaa ataattgcat
     3781 tctgttcact aagcactata gacatggctt tttcaatcga gggtaaaggc ggaagcccag
     3841 attcttgcag ttttctggaa cactctatca ttggaaacca taacaaaaca gcaataagaa
     3901 atgccggagt cacaggcttt ccatcacgta ttcttgtatc agtattttca agtgctatgc
     3961 ccaaaagcgg attaaccggg taatgactat caaatagagc agctgtttga ggaaatagat
     4021 aattaaataa accatactcg accaataatt tttgaaccga ttcggcttct ccgcattgat
     4081 aaagtttcgt tatttcatca aatagtcgcg aactggaaac atgggttata aggtggctta
     4141 ttttggggaa gggagctttg gtttccggag ataaattaaa ttgcagcttg gcactaaacc
     4201 tgacagcacg taacatacgg acaggatcct cttgataacg cgtaacggga tcgccaatta
     4261 ttcgaattaa cttttgctta acgtcttcta caccaccagt aaaatcaatg attgaagaat
     4321 cagaaatatt ataataaaga gagtttattg tgaaatcacg tctccatgcg tcttcgtcca
     4381 gagaaccata aacattatct cttacaagca tgccgcgttc attaaattgg tggcttgcat
     4441 cgcttgagtt atggccacga aaagttgcta cttcaataat ttcacgatga aataaaatat
     4501 gtaccagttt aaatcgacga ccaatgatac gagcattttt aaaaagattt tttacctcat
     4561 tgggagtcgc atttgtcgct atatcaaaat ctttaggcgc tttatggagc agtaaatctc
     4621 tgacactgcc tccaacgata taggcctgaa aaccatggct gattaaacgg ttaagaactt
     4681 taagcgcatt attacttata tctgctttcg atatgttatg tttatttctc gggatgatat
     4741 aagccaagtc aattgcatgt ccatgcgacc tgtttcttcg taacagtttt ttaataaact
     4801 tgatgattgt tgtttctctc taaattgatt aaacagtaat tcggttgtgt tttc
//
LOCUS       DACVWI010000202         4808 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.203, whole genome shotgun sequence.
ACCESSION   DACVWI010000202 DACVWI010000000
VERSION     DACVWI010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4808
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.203"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..603
                     /locus_tag="JBH85_12855"
     CDS             <1..603
                     /locus_tag="JBH85_12855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-(ms[2]io[6]A)-hydroxylase"
                     /protein_id="HAU0947091.1"
                     /translation="DLQTLNDFLKTKTPEAWLNHAAANIPLLLLDHAHCERKAAGTAI
                     NFISKYPEKAELVAIMAPLAREELLHFEKVIDIMKQKGIVYSPLQPSDYASNLHKHVT
                     NKDGIERLCDQLIIGAIIEARSCERFSSIIPYIEDQDLARFYKTLVKSECRHFEEYLH
                     LAKFYGGSVDDRISEFLTIENAFILSDDVVFRFHSGLPPA"
     gene            complement(692..1438)
                     /gene="ravY"
                     /locus_tag="JBH85_12860"
     CDS             complement(692..1438)
                     /gene="ravY"
                     /locus_tag="JBH85_12860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavY"
                     /protein_id="HAU0947092.1"
                     /translation="MRSYPMSKPSNKMKEELEQIRKTEIENAIAKEREDLLAQRSRER
                     AEADDNLKKGRYIKDPRTGQSITLWESAVQKAEEVLNADLNSYMDARAAIMSLLKMYY
                     EMVKANAQTMKELRAGIGNTIMDWGVFPIKDYIGKKLTGNPEIDLPILQHEVSYTDDN
                     KLKIEPLTRSDKHEEKGQLDKLFEGIIHMWLKNNDYTPDRNNPGQFVNSHGETLDKAT
                     FDKLKKDDQHGLNHFLTEYDPDLQFRPSRP"
     gene            complement(1435..2163)
                     /locus_tag="JBH85_12865"
     CDS             complement(1435..2163)
                     /locus_tag="JBH85_12865"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HAU0947093.1"
                     /translation="MIDSVFISDLHLHPEDNEIQTRFDHFVNWAQLSVKRIYILGDFF
                     HAWSGDDSINAWSTAIAEQIESLTQSGIEIYFMTGNRDFLLGSLFAKRTGWKILTEPT
                     IITLGNHKILLVHGDRYCTNDRSHQRFRLLTRNRWFSFLFLRLPLSFRKRLVNGVRKI
                     SLKNHHKSIEQMDIVTEAAIRHMSENNTEILIHGHTHKPGITSYNYEEKILTRYVLSD
                     WDDIPKLLCYDNTKGFYFTQYDIN"
     gene            complement(2160..2870)
                     /gene="minC"
                     /locus_tag="JBH85_12870"
     CDS             complement(2160..2870)
                     /gene="minC"
                     /locus_tag="JBH85_12870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HAU0947094.1"
                     /translation="MDIMLMGENITNTQAFKLKGRLYTLTVLQVLNTDKNAFSQQFAE
                     IVIRAPKLFERTPVVFDLSSVNHIEFDLQELCQIARNHGMIPLAIQGGSPLHDTLAQC
                     QGLGILNASTAHDKPIIEESSECQSIENFKTKLLTTPVRSGQQVVAKGADLIVTSSVS
                     HGAELLADGNIHVYGTLRGRALAGISGDIEARIFCQSLDAELVSIAGFYRISDAIEPV
                     NGPCQIYLANEHIVVEPL"
     gene            2927..4636
                     /locus_tag="JBH85_12875"
     CDS             2927..4636
                     /locus_tag="JBH85_12875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HAU0947095.1"
                     /translation="MDKRWFEQYQNGVPHEIDASQYLSLISLFNESCSSYASRAAYSN
                     LGTEITYAELDSLSRNFAAYLQQLNLEKGARVAIMLPNVLQYPVAIFGVLRAGYVVVN
                     TNPLYTADEVIHQMNDSGAEVIIVLANFAKTIEKALPSMPSVKHVIVTQVGDLFPSFK
                     RFIVNFVVNHIKKLVPAFTIPHAVAFNYALSEGKQATLHRVELNHDDIAFLQYTGGTT
                     GVAKGAILTHGNLIANVMQAYTWISPLGVSNQDVIVTALPLYHIFSLTANCLTFMKIG
                     AKNILITNPRDMGHFIDQIKNSGFTAITGVNTLFNALLNHPKFKEIDFSKLKLALSGG
                     MALQKSVSLKWSEMTKTRVLEAYGLTETSPAVTINPMYLEGYNGSIGLPLPSTDVSIR
                     DESGKEVPIGTSGELCIKGPQVMPGYWKRPDETALVFTKDGFLKTGDIARMDEEGFIY
                     LVDRKKDMIVVSGFNVYPNEVEQIIGMHPGVLEVGVVGIVDEESGERVKACIVRKDST
                     LTAEQIINHCKEHLTAYKIPKVVEFFDELPKTNVGKILRRALKNQEKEQKSSANKKTM
                     EPV"
     gene            complement(4684..>4808)
                     /locus_tag="JBH85_12880"
     CDS             complement(4684..>4808)
                     /locus_tag="JBH85_12880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HAU0947096.1"
                     /translation="GEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF"
BASE COUNT         1478 a          891 c          888 g         1551 t
ORIGIN      
        1 gatttacaaa cgttaaatga ttttttaaaa actaaaactc cggaagcctg gttaaaccat
       61 gcagctgcca atatacctct tttattgctc gatcatgctc attgtgaacg taaagcagct
      121 ggaacagcaa ttaatttcat aagcaaatat ccagaaaaag cagaattagt agcaattatg
      181 gcaccattgg caagagaaga attactgcac tttgaaaaag tcattgatat catgaagcaa
      241 aagggaattg tttattctcc cttgcagcca tcagactatg catccaattt gcataagcat
      301 gtcacaaata aagatggaat tgagagacta tgcgatcaat taattatagg tgctatcatt
      361 gaggcccgat cgtgcgagcg ttttagctca ataattccat atattgaaga tcaggactta
      421 gccaggtttt ataaaacatt ggttaaatca gaatgcaggc attttgaaga gtatttgcat
      481 ttggccaagt tctatggcgg ttctgttgat gatcgtattt cggagttttt aactatagaa
      541 aatgcattta tcttatcaga cgatgtggta tttcgctttc atagtggctt gcctccggct
      601 tgatgcctta aaacagagtc aacagatttt tcagcactag cccataagta ttatatacag
      661 gctagtgcaa cccaatattt ctcttgctta atcaaggtct gcttggtctg aattgcaaat
      721 caggatcata ttccgttaaa aagtgattaa gtccatgctg atcgtctttt tttaatttat
      781 caaacgttgc tttgtctaag gtttcaccgt gtgaattaac aaattgacca ggattattgc
      841 ggtcaggggt ataatcatta ttctttagcc acatgtggat tataccctca aataatttat
      901 caagttgccc cttttcctca tgtttgtctg agcgagtcag aggttcaatt ttcaacttat
      961 tgtcatcagt gtaactcact tcatgttgca aaattggtaa atcaatttca ggatttcccg
     1021 tgagtttttt cccaatataa tctttaatgg gaaagacacc ccaatccata atcgtgttac
     1081 caattcctgc gcgcaattcc ttcatagtct gagcatttgc cttgaccatt tcataataca
     1141 tttttaataa actcatgatc gcagcacgag catccatata agaatttaaa tcagcattca
     1201 aaacttcctc tgctttttgc actgcacttt cccagagagt tattgattgg cctgtacgag
     1261 gatctttgat atatcggcct ttttttaggt tgtcatcggc ctcagcgcgt tctcggcttc
     1321 tttgagcaag taaatcttca cgctcttttg ctatagcatt ttctatttca gtttttcgaa
     1381 tttgttcgag ttcctctttc attttatttg atggtttaga cattgggtaa ctcctcaatt
     1441 tatatcatat tgggtgaaat agaatccttt tgtattatca taacacaata gtttgggtat
     1501 gtcatcccaa tcacttagaa cataccttgt cagtattttt tcttcataat tgtaacttgt
     1561 tatgccaggc ttatgtgtgt gtccatgaat cagtatttct gtattatttt cagacatgtg
     1621 tcgaattgca gcctctgtaa caatatccat ctgttcgatt gatttatggt gattctttag
     1681 actgatcttg cgaactccgt taaccaatcg tttgcgaaat gataaaggaa gtcttaaaaa
     1741 aagaaatgag aaccacctat ttctcgttaa taatcggaat cgttgatgtg atctgtcatt
     1801 agtacaataa cgatcgccat gaaccagtaa gatcttgtga tttccaagtg taataatggt
     1861 tggctctgtt aatattttcc aacccgttcg cttggcaaat aatgagccaa gcaaaaaatc
     1921 acgatttcca gtcataaaat aaatttcaat gccactttga gtcaatgatt ctatctgttc
     1981 tgcaatagca gtactccatg cgttaatcga atcatcacct gaccaggcat gaaaaaaatc
     2041 acctagtatg tatatccttt ttacagatag ctgagcccaa tttacaaaat gatcaaatct
     2101 ggtttgaatt tcattatctt ctggatgcag atgtaaatcg gatataaaaa cggagtcaat
     2161 cataatggtt caacaacgat atgttcattt gccaagtaaa tctgacaagg cccattaact
     2221 ggttcaatag catcacttat tcgatagaaa cccgctatgg atactaattc agcatccaaa
     2281 gactggcaaa aaattcttgc ctcgatatcc ccggatattc ctgctaatgc tctgccgcgt
     2341 aatgttccat acacatgaat atttccatca gctaataatt ctgccccatg gctaactgaa
     2401 gaagtcacta tcaaatcagc tcccttggca acgacttgtt ggcctgaacg cactggtgtc
     2461 gttagtaatt ttgttttgaa attctctata ctttgacatt ctgaggattc ttcgattatt
     2521 ggcttatcat gtgctgttga agcatttagt atgcccaaac cctgacattg agccagagta
     2581 tcatgtaaag gactaccacc ttgaattgcc aaaggaatca taccatgatt acgtgcaatt
     2641 tgacataatt cctgtaaatc aaattcgata tgattgacag aagacaagtc aaaaacaacg
     2701 ggcgttcttt caaataattt aggcgctcta ataactattt cagcaaattg ttgagaaaaa
     2761 gcatttttat cagtgttcaa aacttgcaaa acggttaaag tatacaacct tcccttaagt
     2821 ttaaatgctt gtgtattagt tatattttca cccattagca tgatatccat tagagagttt
     2881 tttgtttata ctagcatgag gaaaacaata acagaaggat atcaaagtgg ataaacgatg
     2941 gtttgaacaa taccaaaatg gagtaccaca tgaaattgac gcaagtcaat atttatccct
     3001 catatcttta tttaatgaat catgtagctc ttatgctagc agagctgcct attctaattt
     3061 aggtacggaa attacttatg ctgaactgga cagtttaagc agaaatttcg ctgcttatct
     3121 gcagcaattg aatttggaaa aaggggcaag agtagcaata atgctgccta acgttttaca
     3181 atatcctgta gccatctttg gtgtgttacg tgcaggttat gtcgtggtaa acactaaccc
     3241 tttatacaca gcggatgaag taatacacca aatgaatgac tcgggggcag aggttattat
     3301 cgtgctagct aattttgcaa aaacgattga aaaagcattg ccgtcaatgc cttccgttaa
     3361 gcatgtgatt gttacgcaag tgggtgattt atttccttca ttcaagagat tcattgttaa
     3421 ttttgtagtg aatcatataa aaaaattagt tcctgccttc acaattcctc acgccgtggc
     3481 ttttaactat gctttatctg aagggaaaca ggcaacgctc catcgagttg aactgaatca
     3541 tgatgatatt gcgtttctac aatatactgg tggtactact ggtgttgcaa aaggcgctat
     3601 tttgactcat ggcaatctta tagccaatgt gatgcaagca tacacctgga tatctcctct
     3661 gggagtcagc aatcaagatg ttatagtaac tgcacttcct ttgtaccata ttttttcctt
     3721 gacggccaat tgcctcactt ttatgaaaat tggcgcgaaa aatattctga tcaccaatcc
     3781 acgtgatatg ggacacttta tagatcaaat caaaaattcg ggttttacag caataactgg
     3841 agttaatact ctattcaatg cattgctgaa ccatcctaaa tttaaagaaa ttgattttag
     3901 caaattaaaa ctggcattat caggcggtat ggcattgcaa aagagtgtgt ccttaaaatg
     3961 gtctgaaatg actaaaacac gtgttttgga agcttatgga ttaaccgaaa ctagccctgc
     4021 tgtaactata aacccgatgt accttgaagg ctataatggc agtattggct tacctcttcc
     4081 ctcaactgat gtatctattc gtgatgaatc cgggaaagaa gtgcctattg gtacaagtgg
     4141 ggagttatgc attaaaggac cacaagtgat gcctggttat tggaaaaggc ctgatgagac
     4201 agccttggta tttactaaag acgggttctt aaaaactggc gatattgcac gtatggatga
     4261 agaaggcttt atctacctgg tcgatagaaa aaaagacatg attgttgttt caggattcaa
     4321 cgtttatcca aatgaggtag agcaaataat aggaatgcat cccggtgtat tagaagtagg
     4381 cgttgtaggt attgttgatg aagaatctgg tgaacgggtt aaagcctgta ttgtaagaaa
     4441 agatagtaca ttgacggctg aacaaattat caatcattgc aaggagcatt tgactgctta
     4501 taaaatcccc aaagttgtcg aattctttga cgaacttcct aaaacaaatg tgggcaagat
     4561 tttacgtcgt gctttaaaaa accaagaaaa ggagcaaaaa agctcggcca ataaaaaaac
     4621 aatggagcct gtttaggtat aattggagta ttttgggtgc tatttgtcct taatactcct
     4681 cttctaaaag tactctgaat atagtctcag ataagttcca tcagcttcca tttcaagaag
     4741 aattttattt atttttttaa ttaatacaaa ttgatcaggg tttgccataa tagaataccc
     4801 ttctccaa
//
LOCUS       DACVWI010000203         4781 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.204, whole genome shotgun sequence.
ACCESSION   DACVWI010000203 DACVWI010000000
VERSION     DACVWI010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4781
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.204"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            502..696
                     /locus_tag="JBH85_12885"
     CDS             502..696
                     /locus_tag="JBH85_12885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947097.1"
                     /translation="MQQQEPAHLEIEHLLFELNCCVNDLSRHRLQINPHDIQQAELSL
                     HKLESLISFVKQFDTQRIAC"
     gene            797..1219
                     /locus_tag="JBH85_12890"
     CDS             797..1219
                     /locus_tag="JBH85_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAU0947098.1"
                     /translation="MTASLNRVQLIGNLGADPKSITGKDGQSFVTATLATNESFKKND
                     EWQTRVEWHQLVLFGKLTKVAEYLKKGSQVYLEGKLRSNQWTDNEGKTHQTLSVVVNH
                     IQLLSHSKSADESSNKTAEHHMAQMREMLQTDSEEIPF"
     gene            1285..1791
                     /locus_tag="JBH85_12895"
     CDS             1285..1791
                     /locus_tag="JBH85_12895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein ArdA"
                     /protein_id="HAU0947099.1"
                     /translation="MDTPSIYVACLASYNNAILHGVWIDATQSEDDIMEEIWEMLDNS
                     PEPNAEEYAIHDYEGFGSIKIHEYESICNIVGYASFIKEHGELGLALLCDYSIDEAQT
                     MLEEHYQGCYDSEVDFSRQLFDDCYAHQIPDNLICYFDFEAFARDLFISDYCSVEFGG
                     QAYIFSSY"
     gene            1928..2761
                     /locus_tag="JBH85_12900"
     CDS             1928..2761
                     /locus_tag="JBH85_12900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HAU0947100.1"
                     /translation="MGSGVFIILSAILHAAWNTFAKRNSTPYYEVLGIMSFATVFSLL
                     FIPFFSGPLFETSDSFLWALTSGLFEGGYIITLAISLSQSSLGKAYIIMRGSAMVIVW
                     FISACFLGENINLFSIIGVSSVLFGLILTSKTFNPDQSRQLLFPILCGICIAGYHLCY
                     GRSLVYGANPAALFSAALWIALPCVFLLMKKKQRQTFKEQVKSNWKMTSLGGIISALS
                     FLLFLIGLRHAEAGLALTLRNTSVVFAQIFAYFIGEKISQYQWIGALLVAFGASLIYP
                     Y"
     gene            complement(2781..3860)
                     /locus_tag="JBH85_12905"
     CDS             complement(2781..3860)
                     /locus_tag="JBH85_12905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947101.1"
                     /translation="MNLVHEISPSQAQEKVNFVILVPNTKEVTLYNFILREEEVPYNE
                     QPSHYQFKKWSAWCSAHFSSYYFLVKYKNALLRCKQFLYDFGPLSTLDHAALYDHWVW
                     EMNPHVLNQESICWIGYDYSKSKTLSFLSHGTNIELRLLEGNLKDEEFLELCKFFSPL
                     SSSSEILEKSFFELSYWSRYNNCVENACINRNEYKPPSSLWNLRWPMHNILSGSKPDH
                     NLKYLNYLNLDFIADSQIIYGNKDQIEEIQLVMFPKNGKKSQIAWFRVFNKASFPIKK
                     PPLSRLPNMNSFSGYSNFNLTVLNPKSDMISSNIYIASVNNCYGPHDALWWDNENAYL
                     LQLSASVNNSIELFKEIFCQLMDDK"
     gene            complement(3925..4686)
                     /locus_tag="JBH85_12910"
     CDS             complement(3925..4686)
                     /locus_tag="JBH85_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline hydroxylase"
                     /protein_id="HAU0947102.1"
                     /translation="MKLVLNNDVFAVIDDFLELSAFEKIWNFIQTEKFKFVHTSKWVN
                     AFSLEDGSPLWGGVTISHPRPESCTTEQIYPTNTTIDLFIEELIAGSTDYSHLIGFKD
                     KDWDFFYARSYLYPRGAGLSWHTDGKYKISGAYVYYCHPTWDINWGAELLINPTPQLD
                     FDYPEVTLIDDKKKKVGFHLTSSELNKFAADGIGYYIVPKPNRLVIFKNNILHCIKKV
                     ENAAGNHVRASITGFFMSNDKINEAKEAEQEHSSL"
BASE COUNT         1503 a          907 c          810 g         1561 t
ORIGIN      
        1 agggataata ggtttatttt atgttcttca tcaagaaagt taactatttt ggttttcata
       61 atttcctcca gtgctacaca ttacttacat ctaaaccaat gtgatttaac acttgattac
      121 ttctattatg aattaacact gaattggaga aaattatacc atgctttcaa ttgagctcat
      181 ttaatatcaa caagaaaaaa tccttgcttt cgagtactag cttgataatc tgaaagcaac
      241 acaactgatg agtcagcgca attctgacga aacctatagg tcttgtgata tgccatcttg
      301 ttccctaatt ccatggcaaa gtgtttagca gggaaacccc atcaggagtt gtctttacgg
      361 ctttgcgccc gaggagtgct tcgagcacat catcattaat aaccaggtaa atcaaccgat
      421 gtttcggtga tcttttttgc ataacccaat tgggatgaat tatccctttg gggctaatcc
      481 tccctatccc aaggagctac catgcaacaa caggaaccag cacatcttga gattgaacat
      541 ttgctatttg aactgaattg ttgtgtcaat gatttaagtc gccatcgact ccaaatcaat
      601 cctcatgaca ttcagcaagc agagttaagt ttgcacaaat tggaatccct gatttccttt
      661 gtcaaacagt ttgatactca acgaattgct tgttaattga agcaaattaa gtcttatccg
      721 cataacagaa aaccacctgc ctatgcggat gtttttctgt tatgcggctc acatttaaca
      781 ataacaggag aatacaatga ctgcatcttt aaaccgcgtt caattaatcg gtaatctcgg
      841 cgctgatcct aaaagcatca ccggaaaaga cggacaatct tttgtcactg ccactttggc
      901 taccaatgaa tcattcaaaa aaaatgatga atggcaaacc agagtggaat ggcatcaact
      961 ggtgcttttt ggaaaactta ccaaagtagc tgaatattta aagaaaggtt cacaagtata
     1021 ccttgaaggt aaactgcgtt ctaatcaatg gactgacaat gaaggtaaga cacatcaaac
     1081 cttaagcgtc gtcgtcaatc atatccagct actcagtcac tccaaatctg ctgatgaatc
     1141 tagcaacaag accgcagagc accacatggc gcaaatgcgt gaaatgttgc aaaccgattc
     1201 agaagaaatt ccgttttaat cataccctac cacgggagca agctcctgtg tgggattgct
     1261 cccttaatac aaggagataa tcccatggac accccttcaa tctacgtcgc gtgtttagcc
     1321 tcatacaaca atgccatcct gcatggtgtt tggatagatg ccacacaaag cgaagatgac
     1381 attatggaag aaatctggga aatgctggat aacagccctg aacccaatgc tgaagaatac
     1441 gccatacacg attatgaagg attcggcagc atcaaaatcc atgagtacga atcaatatgc
     1501 aatattgttg ggtacgcatc atttattaaa gagcatgggg aactgggctt agcccttctc
     1561 tgtgattatt cgatagatga agcacaaact atgttggagg agcattatca aggttgttat
     1621 gattcagagg ttgatttttc caggcagtta tttgatgact gttatgccca tcaaataccg
     1681 gataatttga tctgctattt tgattttgag gcttttgctc gggatctttt tattagtgat
     1741 tattgttcgg tagagtttgg tggacaggca tatatttttt caagctatta agcccctctt
     1801 tggggcttct tttctactac tttaaactct aaaatccctt tggaacttct attaggtttt
     1861 aaacaagtat tatagcccgt tgattcaatg ttacaataat cgattattta actcaaaatg
     1921 aactaaaatg ggttctggtg tatttataat tttatccgca atactccatg cagcatggaa
     1981 tacatttgcc aaacgcaatt caacacccta ttacgaagta ttgggaatta tgagttttgc
     2041 aactgtattt tcgcttctat ttattccttt tttctctggc ccattgtttg aaacatctga
     2101 ttccttttta tgggcactaa cctctggttt atttgaaggc ggctatataa tcacattagc
     2161 tataagtcta agtcagtctt cgcttgggaa agcctacatt attatgcgag gaagcgccat
     2221 ggtaattgtc tggtttatct cagcatgctt ccttggtgaa aatataaatt tatttagcat
     2281 cattggtgta tcctctgttc tttttggatt gatactaaca agcaaaactt ttaaccctga
     2341 tcaatcaaga caactattat ttcctattct atgtggcatc tgcattgctg gttatcattt
     2401 atgctatggt cgttctttag tatatggtgc aaacccagca gcgctctttt ctgcagcttt
     2461 atggattgct ttgccctgtg tttttctttt gatgaagaaa aaacaaagac aaacattcaa
     2521 agaacaagtt aaatccaatt ggaaaatgac ttctctagga ggaattataa gcgcattatc
     2581 tttcttgcta tttttaatag gattgcgtca tgctgaagct ggtctagccc ttactcttcg
     2641 taatacctca gtagtatttg cgcaaatatt tgcttatttt attggtgaaa agatttccca
     2701 atatcagtgg attggagctt tactggtagc ttttggtgct agcttaatat atccatacta
     2761 aaagtgaatg agtccattga tcatttgtca tccataagtt gacaaaaaat ttccttaaat
     2821 aactctatag agttatttac actagcactt agctgtagta gataagcatt ttcattatcc
     2881 caccaaagag catcatgtgg cccataacaa ttattaacac tggcaatgta tatattgctg
     2941 gaaatcatat cactcttcgg gtttaggaca gttaaattaa aattactgta tccactaaat
     3001 gaattcatat tgggcaatct agaaagtggt ggtttcttta ttggaaaaga ggctttatta
     3061 aaaacacgaa accatgcaat ttggcttttc tttccattct tcggaaacat aaccagttga
     3121 atctcttcta tttgatcttt attgccataa ataatttgac tatcggcaat aaaatccaaa
     3181 tttagatagt ttaaatactt tagattgtga tctggcttgc ttccactaag gatattatgc
     3241 attggccatc ttaaattcca taaacttgaa ggtggtttat attcatttct attaatgcat
     3301 gcattttcta cgcagttgtt gtagcgtgac caatacgata gttcaaaaaa gctcttttct
     3361 aagatttcac ttgatgatga aagaggagaa aaaaatttac aaagttctaa gaactcctca
     3421 tcctttaaat ttccttcaag tagacgaagt tcaatattag tcccatggga taaaaaactt
     3481 aacgttttcg atttcgaata atcataacca atccaacaaa tactttcctg attcaaaacg
     3541 tgggggttca tttcccaaac ccaatgatcg tataaagcag cgtgatctaa tgttgataaa
     3601 ggtccaaagt catacaaaaa ttgcttacat cttaagagag catttttata tttcaccaag
     3661 aagtaataag aggaaaaatg agcagaacac caagcagacc attttttaaa ttgataatga
     3721 cttggttgtt cattataagg aacttcttcc tccctaagta taaagttata taaagtaact
     3781 tctttagtat tgggtaccaa aataacaaaa tttacttttt cttgagcctg actaggggag
     3841 atttcgtgca ctaaattcat tttttaattc caagcatatt aagattggga gtcatctata
     3901 atttggcggg actaaaacta ataattataa gcttgaatgt tcttgctcag cctctttcgc
     3961 ttcatttatt ttatcattac tcataaaaaa cccggttatc gatgccctta catgatttcc
     4021 tgctgcattc tctacttttt ttatacagtg caaaatatta tttttaaaaa taaccaacct
     4081 attaggttta ggtacaatat aatagcctat tccatcagca gcaaacttat tcaactcaga
     4141 actagtaaga tggaacccta cttttttctt cttatcatca atcaacgtca cttcaggata
     4201 atcaaaatct agttggggtg taggattaat taataattca gctccccaat ttatgtccca
     4261 agtggggtgg cagtaatata catatgcacc tgatattttg tacttaccat ctgtatgcca
     4321 agatagtcct gcccctcttg gatacaaata ggatctagca tagaaaaaat cccaatcttt
     4381 atctttgaaa cctattaaat gagaatagtc agtggatcct gcaattaatt cctctataaa
     4441 taaatcaatt gttgtgtttg tagggtaaat ttgctctgta gtgcaagact caggtctagg
     4501 gtgagaaata gtaacaccac cccataaagg ggagccatcc tcaagactaa aagcatttac
     4561 ccatttagaa gtatgaacaa acttgaattt ttcagtttga ataaaattcc aaattttttc
     4621 aaaagctgat agctctaaga agtcatcaat tactgcaaaa acatcattgt ttaaaactaa
     4681 tttcatatca atataaaacc atcaaaggag atacttatat ctccattgat aaccaaggca
     4741 tatattcgtc cttatcttca tcggcatcaa ttctattaga a
//
LOCUS       DACVWI010000204         4743 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.205, whole genome shotgun sequence.
ACCESSION   DACVWI010000204 DACVWI010000000
VERSION     DACVWI010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4743
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.205"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1296)
                     /locus_tag="JBH85_12915"
     CDS             complement(<1..1296)
                     /locus_tag="JBH85_12915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HAU0947103.1"
                     /translation="MVFSSLIFLFLFLPCLNLTYLVCFKSIKWQNFVLMLFSLSFYYW
                     GEKDHIFIMLACILINYLCGLLIEDSKKPGQRKIYLITSVSASLAMLMYFKYFNFFLD
                     SLNSVFDLNVMGISKIVLPLGISFYTFHALSYVVDVYWKKVPAERNFVTFVCYVSFFP
                     QLVAGPIVRYADIRHSFYQRYITRAGVRNGILRFCFGLAKKVLIANEVAKLADYVFYL
                     PANELTFWVAWLGAIAYALQIYFDFSGYSDMAIGLGLMFGFKYKENFNFPYNALSIQE
                     FWRKWHISLSSWFRDYLYIPLGGSYKSRFRTQINLIIVFGLCGLWHGANYTFIVWGLF
                     HGFFLILERTHFGYFMKKLPKIIRHGYVLSVVTVGWVFFREDNIQSALVFLKTMFIPA
                     EFNLDSIAACINIILIFAFIVGIILALGFNSRVRDSLILS"
     gene            1512..2150
                     /locus_tag="JBH85_12920"
     CDS             1512..2150
                     /locus_tag="JBH85_12920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947104.1"
                     /translation="MQDSFFSFLSSPINLLFLFVAFFLLFVTPWLWNIVNSAHNIHKL
                     LDPLGIKKKENSLPVTGLLFLPLLLIIIFIEWFWPLANITLFPILASPYIKFNIIAVI
                     SVVILLILIQCDKKKSMELWVLAYAAVLYLLYLIIIMATVVVGMNAFPASHYIFAPES
                     SMTINRTIIYGLLIAHLIFIWLTISLKFTWRLLLMILYTLALSFAYFSLIVS"
     gene            2377..3477
                     /gene="wipC"
                     /locus_tag="JBH85_12925"
     CDS             2377..3477
                     /gene="wipC"
                     /locus_tag="JBH85_12925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector WipC"
                     /protein_id="HAU0947105.1"
                     /translation="MNRMALFIIFIIHCFFSQSFAEQEKPYNELYVKQANLKQYPKEI
                     NSYPPGVEITIGDLHGNALKLLYFLIRNDVIKIDKEDYKLFVTIYQKNPNELTTKDLS
                     FFQIIVNSAEINTQHKIRFLGDDLCDRGMNDYYTLVIYKKLDQANVPFEVILSNHGNF
                     FLTAYERPEQSFNYNPYGEGENESTVQSMLNMGRLIDRGLIDKQDILEMIQYHYLKHI
                     VLPSYTHNKDKNELTIYTHAPIDLGIISALANDLQVPFKDSNLHELTKSLDAMNSKIK
                     QWILSNTFTRHYKELNEAHNQINTPSPIKQILWNRDYSILDRHAHPNNKPYGINYVHG
                     HDSMPNVFDLDNLFGKGEDFYQGPYAVHITHS"
     gene            complement(3525..4742)
                     /locus_tag="JBH85_12930"
     CDS             complement(3525..4742)
                     /locus_tag="JBH85_12930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010654523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HAU0947106.1"
                     /translation="MYLLWLLAVTSFNFSTSTIPVSKAEPQGNLLYSEIPSIKMPLNE
                     IKTLLQKEGNSLQPAVIDKVITTIQCANAYQVDRNNILTIIDYSMPSNQKRLWVFDLD
                     KKELLFHTYVSHGIKSGTLLTDKFSNKFDSKASSIGVYKTEQVYYGREGLSLRLVGLD
                     TKFNDNAFNRYIVMHGGWYMDEQFIKRYGRPGRSWGCPALPLPIKKQIIDTIKDNSLL
                     VVYYPSDEWFNKSKFLNCSKQKSDQVAINKLSETQAPVDDEIREDILFVDLNKNNSRE
                     EHEPIITMSADAYERIFHSQPPLSRMLRRQINNAEYIALSKEEFSKLVLQGNREGLGE
                     IHFVIPVIIMEHGYYETQMQIVNMGKIKEVQPNSDTSRITQEPAKSYRIDFESKPALN
                     LKTTNRFIRWLGL"
BASE COUNT         1600 a          936 c          763 g         1444 t
ORIGIN      
        1 acttaagatg agactatccc ttactctgct gttaaaccct aacgcaagta taatgcccac
       61 aataaaagca aaaataagaa taatattaat acatgctgct atggaatcaa gattgaactc
      121 agcaggaata aacatcgttt taaggaatac cagtgccgac tgaatattat cttccctgaa
      181 aaatacccat ccgactgtca caacagagag aacatagcca tggcgaataa ttttaggtaa
      241 ttttttcata aaataaccaa agtgggttct ttccagaata aggaaaaacc catgaaataa
      301 cccccaaaca ataaaggtat aattagcgcc atgccataaa ccgcacaaac cgaatacaat
      361 gatcaagtta atctgcgttc gaaatcttga cttataactc cctccgagcg gtatatataa
      421 ataatctcga aaccagcttg ataaggagat atgccacttc cgccagaact cctgtatcga
      481 taaggcatta tagggaaaat taaaattttc cttgtattta aacccaaaca tcaaaccaag
      541 gcctattgcc atatcagaat agccggaaaa atcaaagtag atttgcagag cataggctat
      601 agctccgagc caggccaccc aaaaagtcaa ctcattggca ggcaaataaa atacataatc
      661 agcaagcttt gccacttcat tggcgataag aacctttttt gccaagccga aacaaaaacg
      721 cagaattcca ttacgtaccc ctgcacgagt tatatatctc tgatagaaag aatgtcttat
      781 atctgcatag cgaacgattg gtcctgccac caattgcggg aaaaaggata cataacaaac
      841 gaaagtaaca aaattacgtt ctgctggtac ttttttccaa tacacatcaa ccacatagct
      901 taaagcatga aaagtataaa aacttattcc aagaggcagc acaattttac tgattcccat
      961 gacatttaag tcaaagacac tgttcagtga atcaagaaaa aaattaaagt acttaaaata
     1021 catgagcata gccagtgatg cgctcacaga ggtgatcaaa tagatttttc gttgtcctgg
     1081 ttttttgctg tcctcaatca atagaccaca tagataattt atcaaaatgc acgccagcat
     1141 aataaagata tgatctttct caccccaata ataaaaggac aagctaaaga gcattaaaac
     1201 aaaattttgc cacttgatac ttttaaaaca gactagataa gtcaggttaa ggcacggaag
     1261 aaataaaaaa agaaatatta aagatgaaaa aaccattcta tctccgtgaa ggcatttgcg
     1321 gaattaatta aacttgtatt aactgttcaa gacgttagat tcatcgcgtg aagcgcatta
     1381 tagggaagtg ttattcgttg tgcaaataga atacgataaa aagaaccatc tgcaaaatct
     1441 gaattgaagc tgccattata acattcatta gctatactta acctaaggca gcattcgttg
     1501 atgaattaat aatgcaagat tcctttttct catttttatc aagccctatc aatttactct
     1561 ttctttttgt tgcatttttt ttgctttttg taacaccatg gctctggaac atagtgaact
     1621 cggctcacaa cattcacaag cttcttgacc cgcttgggat taagaaaaaa gaaaattcac
     1681 tgccagtgac aggactgtta tttctcccac tgctcctgat aataattttc attgaatggt
     1741 tttggccttt ggcaaatatc acgttgtttc cgatactagc ctcaccctat attaaattca
     1801 atatcattgc agtcatttca gtagttattc ttttgatttt aatccaatgt gataaaaaaa
     1861 aatcaatgga gctttgggtg cttgcctatg cagctgtact ttatttattg tatttgatta
     1921 tcattatggc gaccgtagtg gtagggatga atgcttttcc tgcaagccat tatatttttg
     1981 cccctgaaag cagcatgaca atcaatagga caataattta tggtttatta atagcccatt
     2041 taatttttat ctggctaacc atatcgctta aattcacatg gcgtttattg ttaatgatac
     2101 tctatactct ggccctgtct tttgcttatt tctctcttat agtctcttaa ataagctgtt
     2161 tctttcattt tattgtagtg ttgcaaacgt ttgtgtggtg cagaaactcc gcccctcaaa
     2221 acgttttcac tttaccctgg caggacttac gaaaaacccc aaggtcgagg caagtggtct
     2281 accattgctt tcatgaacaa accaaggtat acctagctta ccagattacg gtcatcgaca
     2341 cagaacaata aaaaattttt acaggatgta gcattcatga accgcatggc acttttcatc
     2401 atttttatta ttcattgttt tttttctcaa tcatttgccg aacaggaaaa accatacaac
     2461 gaattgtacg tcaaacaagc aaacctgaaa cagtatccca aggaaatcaa tagttatccg
     2521 cctggcgtag aaatcactat tggagatttg catggaaatg cattgaaatt gctctatttt
     2581 ttaattcgca atgatgtgat taaaatcgac aaagaggact ataagctatt tgtaactatc
     2641 taccagaaaa atcctaacga actgacaaca aaagatttgt cttttttcca aattatagtc
     2701 aattccgctg aaatcaatac ccaacacaag atacgttttc tgggagatga tctatgtgat
     2761 cgtggcatga atgactatta cactttggtt atttataaaa agctcgacca ggccaatgtc
     2821 ccttttgagg tgattctatc caatcatggc aacttttttt taacagccta tgaaagacct
     2881 gagcaatctt ttaactataa tccttacggt gaaggtgaaa acgaatccac agtgcaatcc
     2941 atgctaaata tgggaagact gattgatcgg ggattaattg ataaacagga cattttggaa
     3001 atgattcaat atcattactt aaagcatata gtacttccca gttatacgca taataaagat
     3061 aaaaatgaac ttactattta tactcatgcg ccaatcgatt taggaataat ctcagcatta
     3121 gccaatgatc tgcaagttcc ttttaaagac tctaacttgc atgaattaac caaaagtctt
     3181 gacgcaatga actccaaaat aaaacaatgg atactctcta acacgttcac tagacattac
     3241 aaggagctta acgaagcaca caatcagatc aacacgccaa gcccaattaa gcaaatattg
     3301 tggaatcgtg attattctat cctcgatcgc cacgctcacc ccaataacaa accctatggc
     3361 attaattatg ttcatggcca tgactctatg cccaatgtgt ttgatctgga taacttattt
     3421 ggaaaaggtg aggattttta ccaagggcct tacgctgtgc atattacaca cagctagctg
     3481 tgaataaaat caaccctgtc attaaacagg gtaacaaatt gaaattatag ccctagccac
     3541 cgaataaagc gatttgttgt ttttaaattg agggctggtt ttgattcaaa atctattcta
     3601 tagcttttag caggttcctg tgtaatacga gacgtatcag aattgggttg aacttcctta
     3661 attttaccca tattgacgat ttgcatttga gtttcataat acccatgttc cataataatg
     3721 acaggtatta caaaatgaat ttctcccaaa ccctccctat tcccctgaag aaccagcttg
     3781 ctaaattctt ccttactcaa agcaatgtat tctgcattgt taatttggcg tcttaacatg
     3841 cgggacaaag gaggttgaga atgaaaaata cgctcataag catctgctga catagtaatg
     3901 ataggttcat gctcttcacg gctgttattt ttattgaggt caacaaacaa aatatcttcc
     3961 cgtatttcat cgtcaacagg agcttgggtc tcagaaagct tgttaatagc gacttgatca
     4021 gatttctgtt tactgcaatt taaaaatttc gacttattaa accactcatc gctaggataa
     4081 taaacaacca gtaaagaatt atcttttata gtatcaataa tttgtttttt aattggcaaa
     4141 ggtaacgcag gacaacccca actacggcca ggccgaccat atcttttgat gaattgttca
     4201 tccatatacc atccgccatg cataacaata taccgattaa aggcattatc attaaatttg
     4261 gtatccaacc ccactaatcg taaagacaat ccttctcgac cataatagac ttgttctgtt
     4321 ttataaacac caatactgct ggccttacta tcaaatttat ttgaaaattt atctgttaaa
     4381 agagtgcctg actttatccc atgagataca taagtatgaa ataataattc tttcttatcc
     4441 aaatcaaaca cccataaccg tttttgatta gaaggcatgg aataatcaat aatagtcaat
     4501 atattatttc tatccacttg ataagcatta gcgcattgta tggtcgttat cactttatca
     4561 ataacggcag gttgaagaga attaccctct ttttgtaaca atgtttttat ttcattcaaa
     4621 ggcatcttga ttgacggtat ttcactgtat aaaagattcc cttgaggctc ggcttttgac
     4681 actggaatcg tagaagttga aaaattaaat gatgttactg ctaataacca tagcagataa
     4741 ata
//
LOCUS       DACVWI010000205         4738 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.206, whole genome shotgun sequence.
ACCESSION   DACVWI010000205 DACVWI010000000
VERSION     DACVWI010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4738
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.206"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..376
                     /locus_tag="JBH85_12935"
     CDS             <1..376
                     /locus_tag="JBH85_12935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947107.1"
                     /translation="DYWKSPVEFIVDGGGDCEDFAIIKYFTLVAVGVPSDQLRITYAA
                     SLTLNQAHMVLSFYPTPESEPLILDSLESKILKASARPDLKPVYSFNAEGLWLAKTRG
                     ESSLMGDSKSLGKWDALMKRME"
     gene            392..2311
                     /locus_tag="JBH85_12940"
     CDS             392..2311
                     /locus_tag="JBH85_12940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0947108.1"
                     /translation="MTLTKKMAVGVLIMLLFVFIGTYFITMNNARNFFIQQLESNAQD
                     TATSLGLSLSQSLINHDVPTMDSMVKAVFDRGYFSSIKVQDIKGKVIILKKQLPQESD
                     IPQWFVNLIKWPSTEKSSLIMDGWMQAGVVLVASDPSYVYASLWRNAVEMVNAYLIFA
                     LVALVLSYGFLKYLLQPLKRVTAQALAISEHEFPVETKIPKTPELRQVTLAMNQMVTK
                     VKSLFQDQLKQTESLRTQVYQDSLTGMSNRRYFLQHLALILDNEDEFIPGYVMMLVID
                     GLDELNQKQGYQQGDQLVLTVAKICKSYWKQSSVSTLARINGTTFALISHERDPLVFE
                     KECKEFEQILSQGITDIKICKTYMGAASYFLHQPVSNLLSMVDQAVKKARETGVFYCQ
                     KEHDTYKYPQLISGDEIRNSLEQKKISLYAQAVTDGKNCFHKEVFVRIRNQEGEELGA
                     GYFIPVAEKLGLAYPIDQYVLNELTLMDIATHTHFALNISEDTLANKVNSTGYLRQLE
                     DTPAAVLRNLSLEINEAHVLSHFSNSKFFIKQAKKLGVTVGIDRVGIKFSPLHYLSDL
                     NIDYLKLHGSLVTDIDENESKQFFIHYFNEMAKTMDIAVVATQVESEAQWQALQIVHI
                     PWGQGRFLSSVELIK"
     gene            2447..3172
                     /locus_tag="JBH85_12945"
     CDS             2447..3172
                     /locus_tag="JBH85_12945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947109.1"
                     /translation="MNYFGNLQIRFSKSFLLLLIVSSLTACVDLTGARNTYIKKEKQP
                     AISDVPNKKSKAQNMSSKKGEVHTMLGGLGIFSKGMYTLRDKVSEKYHITAHSTMWYN
                     AGAVSRYIIDHYYQEKDHKPIILVGHSLGANEQIKVARNLNAAGVPVALLVTVDAVSQ
                     TIVPPNVKQALNVYKPGFVPMFSGLKLRAVDPQLTKIDNVNVDSLKGIKVNHFTIDKD
                     EILQAMIMDKVDKVLVDGNKKGA"
     gene            3147..4490
                     /locus_tag="JBH85_12950"
     CDS             3147..4490
                     /locus_tag="JBH85_12950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SidA/IucD/PvdA family monooxygenase"
                     /protein_id="HAU0947110.1"
                     /translation="MMEIKRVLKDRLSARVCVVGAGPSGIAAIKNLQEHGITNVTVFE
                     KNNQIGGNWVYDEQNEHSSVYETTHIISSKRWSEFEDFPMPVDYPDYPSHSQLLKYFQ
                     SYVEHFHLDRYIRFNTVVQKVHRLDDNTWHVIYEDAQGIHEACYDYLLVANGHHWDPF
                     MPVYPGVFDGEILHSHQYKKASIFKGKRVLVVGGGNSACDVAVEISRVAPGTCISMRR
                     GYHIFPKFIFGKPTDVAVAKIQWMPSWLRQKFISLVIRGLQGRYAKYKLMKPDCGPLE
                     IHPTINSELLYFIRHGKIHPRPGISRFEGNTVHFTDGTQGEFDTIIFATGYQISFPFF
                     DKNCIDFSNSTTIPLYRKMMHPEFENLYFIGLCQPQGCIWPLADYQSKIVARIIAGTL
                     KRPEQLHQKIAKEINKPHHRFKSHMRHALEVDYHIFRRELLEMLGQKHRRLKFYP"
BASE COUNT         1486 a          808 c          989 g         1455 t
ORIGIN      
        1 tgattattgg aaatcaccag tagaatttat tgttgatggg ggaggtgatt gtgaagattt
       61 tgccataata aaatacttta cattagttgc tgttggtgtt ccttctgacc agttaagaat
      121 cacttatgct gcttctctta ctctaaacca ggctcatatg gtgctgtctt tttacccaac
      181 tcctgaatcc gaaccactaa tccttgacag tttggaaagt aaaattctga aagcttctgc
      241 aaggcctgat ttgaaaccag tttatagctt taatgcggaa ggtttatggc ttgcgaaaac
      301 aaggggagag agttcattga tgggggattc aaaaagtttg ggcaagtggg atgctctaat
      361 gaaacgtatg gaataaaaaa ggtgatagac catgacatta actaagaaaa tggctgtagg
      421 cgtgttgatt atgttgttat tcgtttttat cggaacttat ttcatcacta tgaataatgc
      481 gcgtaatttt tttatccaac aacttgaaag taatgctcaa gatactgcga catcattagg
      541 tttgtcttta tctcagtctt taatcaatca tgatgtacct accatggatt ctatggttaa
      601 agctgttttt gacagaggat atttttcatc aattaaggta caagacataa aagggaaagt
      661 gatcatttta aagaaacaat tgccacaaga aagcgatata ccacaatggt ttgtgaattt
      721 aataaaatgg ccatcgactg agaagtcatc cttaattatg gatgggtgga tgcaagcagg
      781 agttgtttta gtagctagtg atccgagcta tgtttacgcc tctttgtggc gtaatgctgt
      841 agaaatggta aacgcttatc tgatttttgc gttagttgct ttggttctaa gctatggctt
      901 tctaaaatat ttattgcaac ctttaaaacg agtcacagca caggctttgg caatttcaga
      961 acatgagttt cctgtagaaa caaagattcc taaaacccct gaattgaggc aagttaccct
     1021 ggctatgaac caaatggtta ctaaagtcaa atccttattt caagaccagt taaaacaaac
     1081 agaatcactt agaacacagg tttaccaaga ttcattaaca gggatgagta atcgtcgtta
     1141 ttttttacag catttggctc tgatcctgga taatgaagat gaatttatac ctggttatgt
     1201 catgatgctg gtcatagacg gtctggatga gttaaatcag aagcaagggt atcagcaagg
     1261 ggatcaattg gtattaactg tagccaaaat atgtaaaagc tattggaagc aatcgtctgt
     1321 tagtacattg gcaagaatta acgggacgac ctttgcctta attagtcatg aaagggatcc
     1381 tttggtgttt gaaaaggaat gtaaggagtt tgagcaaatt ttgagccaag gtatcactga
     1441 tattaaaatt tgcaaaacat acatgggggc tgcgagttat tttctccacc aacctgtctc
     1501 caatctgttg tctatggtag atcaagcggt taaaaaggct cgtgaaaccg gcgtatttta
     1561 ttgccagaaa gagcatgata cttataaata tccccagtta atcagcggcg atgaaattag
     1621 aaactcattg gaacagaaaa aaataagttt gtatgcacag gcagttacag atggtaagaa
     1681 ttgttttcat aaagaggtct tcgttcgaat tcgcaaccag gaaggggagg agttaggagc
     1741 tggttatttt ataccagttg ctgagaaatt aggattggcc tatcctattg atcagtatgt
     1801 gctcaatgaa ttaaccctca tggacattgc aacacatacc cattttgctc ttaatatttc
     1861 agaagatact ttagcaaata aagtcaatag cactggttat ttgcggcaat tggaagacac
     1921 tcctgcagct gtcttgagaa atctctcact ggaaattaat gaggctcacg ttttgtcaca
     1981 tttttcaaac tccaagttct ttatcaagca agccaaaaaa ttgggggtga cagttggaat
     2041 agatcgtgtg ggtattaaat tttctccatt gcattatttg agtgatttaa acatagatta
     2101 tttaaaactg catgggagtc tggtgacaga tattgatgaa aatgaaagca agcagttttt
     2161 catacattat tttaatgaaa tggctaaaac gatggatatt gcggtggtag caactcaagt
     2221 ggaaagcgag gctcaatggc aagcattaca aatagtccac ataccctggg ggcaggggcg
     2281 ctttttatct tctgtagaat tgataaaata acgagatgaa aaacagatta ttctcaaggc
     2341 attaaaatga attcgtgaat agccttaaac ccgccaggtg cctctgtaaa atggtacaag
     2401 aataaggtat gataaaaaat caaataatta caataataat attaatatga actattttgg
     2461 caatctgcaa atacgttttt ccaaatcatt tttattgttg ttaattgtta gtagtttaac
     2521 agcttgtgtg gatttgacgg gcgcgcgaaa tacttatatc aagaaagaaa agcaacctgc
     2581 aatttctgat gtccctaaca aaaagtccaa agcacaaaat atgtcatcaa aaaaaggcga
     2641 agtccatact atgcttggcg gcctgggaat tttcagcaag gggatgtaca cacttcgtga
     2701 taaagtgtct gaaaaatacc atatcacggc tcatagcacc atgtggtata acgctggagc
     2761 ggtaagtcgg tatattattg accattacta tcaagagaaa gatcacaagc caattatttt
     2821 agtggggcat tctttagggg ctaatgaaca aatcaaagtg gctcgaaatt tgaatgctgc
     2881 aggtgtccct gttgctttgt tggtgactgt cgatgccgta tcacaaacta ttgtgcctcc
     2941 taatgttaaa caagctttga atgtatataa acctggtttt gtgcctatgt ttagcgggtt
     3001 aaaactcaga gcagtcgatc ctcaattgac aaagattgat aatgtcaatg ttgattcgtt
     3061 aaaagggata aaagtaaatc attttacaat tgacaaagac gaaattttac aagcgatgat
     3121 aatggataaa gttgataagg tgttagttga tggaaataaa aagggtgctt aaggaccgtc
     3181 tatctgctcg tgtttgtgtt gtcggtgctg gtcccagcgg tattgccgcc attaaaaatt
     3241 tgcaagaaca cggcattact aatgttactg tctttgaaaa aaacaatcaa ataggtggta
     3301 attgggttta tgatgagcaa aatgagcatt ccagcgttta tgagacgact catatcatca
     3361 gttcaaaacg ctggtctgag tttgaagact tccctatgcc tgttgattac ccggattatc
     3421 cttcacactc ccagctttta aagtattttc agagttatgt ggagcatttt catttagata
     3481 gatacattcg ttttaacaca gtggtacaaa aggtacatcg acttgatgat aatacatggc
     3541 atgttatcta tgaggatgcc caaggaattc atgaagcgtg ctatgactat ttgctggtag
     3601 ctaatggtca tcattgggat ccctttatgc ctgtatatcc tggagtattt gacggggaga
     3661 tacttcattc tcaccaatat aaaaaagctt caatttttaa aggcaagcga gtactcgttg
     3721 ttggtggggg taattcagcc tgtgatgtcg ctgttgaaat atcgcgggtt gctcccggaa
     3781 cttgcattag catgcgtaga gggtatcata ttttccccaa atttattttt ggtaaaccaa
     3841 cagacgtagc agtcgctaaa atacaatgga tgccatcctg gctaagacag aaattcatca
     3901 gcctggtcat tagaggattg caaggccggt atgccaagta caaattaatg aagcccgatt
     3961 gtgggccatt ggaaattcat cctactatta attccgaact cttgtatttt attcgccatg
     4021 gcaaaataca ccctcgtccc ggtatatcga gatttgaggg taacaccgtt cattttactg
     4081 atggaaccca gggggagttc gatacgatca ttttcgctac gggttaccaa atcagttttc
     4141 cattttttga taaaaattgt attgatttta gtaactctac caccatccct ttatatcgaa
     4201 aaatgatgca ccccgagttt gaaaatttgt atttcattgg tctatgccaa ccccaaggct
     4261 gtatttggcc tctggctgat tatcaatcaa aaatagtggc ccgtattatt gcgggaactt
     4321 taaaacgtcc tgagcaatta catcaaaaaa tagccaaaga gatcaataaa ccccatcacc
     4381 gatttaaatc tcatatgcgc catgctttag aggtcgatta tcatattttc agaagagaat
     4441 tgttagaaat gctaggccaa aaacatagga gactgaaatt ctatccctag attcgtaatg
     4501 agtacatgaa tgttaaagca tgaatgatca catcagttat aagccgggtt atacgtaact
     4561 tttcatgggg tatgtaatta aggaatatta ggtcctctgt ctttcccgcg aaggcacact
     4621 actgtccggt ttaagtttta gtctccaggc ctatattctt atgcttggga atctgatttt
     4681 ttaaaaataa acgaataggt tttgaatcca aagatttatc taaatgaaac ccaatcca
//
LOCUS       DACVWI010000206         4733 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.207, whole genome shotgun sequence.
ACCESSION   DACVWI010000206 DACVWI010000000
VERSION     DACVWI010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4733
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.207"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..3882
                     /locus_tag="JBH85_12955"
     CDS             <1..3882
                     /locus_tag="JBH85_12955"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00092.26,HMM:PF00353.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion C-terminal target
                     domain-containing protein"
                     /protein_id="HAU0947111.1"
                     /translation="VTVTDGDGDVATQAIGIGDKVVFEDDGPVASNITRSGLANEGAD
                     TNLMLILDTSGSMAGSGIQTLINSTLELLERYEALGNVKVRIVTFNTSATAIGSVWMT
                     VDAAKNALLGLTAGGNTNFDAALITAMNAFNSGTVGGADGRIGGAQNVSYFISDGNPT
                     VNQDWPSIPGTLAQNGIQPSEQAAWEAFLQDTNGASAGGEKIRSYALGMGTGITVSNL
                     EPIGFNGVNGTDIPAVVVTDISQLDSVLASTITASPISGTLISDPNPGVNFGADGGHV
                     QSVTVNGITYTVNANLSSLSTSGSATQGSNTHSYDNSTHVLTVTISTGESLTIDMDNG
                     SYTFTPPANITSSINRIINYVLVDGDGDTAAATITFNIDISGFNDPLVVRDDLVLTNQ
                     PAVSGQDVISIPTWALLANDTGGSGVSSVSSVTQPVAEGTVVLNAGSVAFTEESNSAA
                     DGTYNGSTSDPFRYTNTTGSQSATAKVDLDRTQAGENRLDGTYRSEILLGRDTSNDTI
                     IGNDGNDILIGLGGNDTLSGGNGDDILAGGAGNDTLDGGAGNDTATYIDATAGVTVSL
                     NTSSAQNTVGAGTDTLTNIENLTGSKFNDTLTGNNSANTIKGLEGNDTISGLGGNDTL
                     DGGSGDDVIIGGLGDDILTGGSGADQFVLVKGQGGASAGAAPIDTITDFEVNIDKIVI
                     NGNNITGVSVSTPVSNTYTITVNYSDAATEHFKVTLSNGAVLNDSGKTHLNGVVISGG
                     TATIDGTIVGAVLYLDLNANNQEDEGERLGITNQYGHVEWVVDLSKFDVNGDGQYVIG
                     EARAVQTGGFDIDTGLSYEINLYGPVGSAVISPLTSLLQAQLEAGMDYETANAALVAR
                     LGLPEGTQIISFNPITGSGEVLAQNAGVMTAAIQFAEIAAIHYSTDEGHVSFAVFEAI
                     SKALLELPEGVVADFGDEGFLQSISNYLGLDALVTSDMIDYMATSQKALEASILTLAP
                     GEDALTAISKIQHVTQGIYAQAIEMALIGYLPLDALKNMSAVLKAYADGDITDEQLNS
                     FEDKLSAVIVNWEDNNVTDTSHQATLQTERTVDDSSVKSEVNHEMAQEVNAVINDFMD
                     EHNISLYYYDQQAQMPQEAQQPTEDQAEETVMHDDVVQDLLLDDHSLTMLANNPELNG
                     GNGNDILHGTTGNDFIRGGQGNDTMTGGGGVDTFFWLSGDDDGGVDTITDFKANPVDK
                     SSDASVLNLSDLLSDADLETNSLDNYLNVSTTEEGDTAIKVDPNGNGNFDAPAQTIIL
                     EDVDLTAVFATNNSHDIVNQMIANGNLIVEQ"
     gene            4061..4660
                     /gene="wrbA"
                     /locus_tag="JBH85_12960"
     CDS             4061..4660
                     /gene="wrbA"
                     /locus_tag="JBH85_12960"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HAU0947112.1"
                     /translation="MSNPYILVLYYSRTGSTAQLAQYIARGVESVSGLEARLRTVPPV
                     STTCEAVDKPVPDAGATYVSLDDLRHCHGLALGSPTRFGNMAAPMKYFWDGTTSLWLG
                     GDLVNKPACVFSSSASMHGGQETTLISMMIPLLHHGMILLGVPYTEPALTSTQSGGTP
                     YGVTHVAGGDNENPLSQDEISLAKALGERLGRVAMGLKV"
BASE COUNT         1341 a          848 c         1150 g         1394 t
ORIGIN      
        1 gtgacagtga ccgacggcga tggggatgtg gccacacaag cgataggcat aggcgacaag
       61 gtggtgtttg aagacgacgg gcctgtggca tcaaatatta caagatcagg attagcaaat
      121 gagggtgctg atacaaacct tatgctaatt cttgatactt caggaagtat ggcgggttca
      181 ggaattcaaa ccttaattaa ttcgactttg gaattacttg agcgatatga ggcgcttggt
      241 aacgtaaaag tacgtattgt aactttcaac acaagtgcaa cggctattgg ctctgtttgg
      301 atgaccgtag atgcagctaa aaatgcactc cttggactta ctgcaggagg caatacaaat
      361 tttgatgcgg cacttattac cgctatgaat gcatttaatt ctggtactgt tggtggagct
      421 gatggaagaa tagggggagc acaaaatgtg tcgtatttta tctctgatgg taatccaaca
      481 gttaatcaag attggccaag tattccaggt acattagcac aaaatgggat tcagccaagt
      541 gagcaagctg catgggaagc tttcctgcaa gacacgaatg gtgcatctgc tggtggcgaa
      601 aaaattagat cttatgcctt aggcatgggt acggggatta ctgtcagcaa tcttgagcct
      661 ataggattta atggggtaaa tggtacagat attcctgctg ttgtcgttac agatattagt
      721 caactagaca gtgtattagc aagtacaatt actgcaagcc caattagcgg tactttgatc
      781 tcggatccta accctggtgt taactttgga gctgatggag ggcacgttca atctgttaca
      841 gtgaatggta taacttatac tgttaatgca aatcttagtt ctctttctac aagtggttct
      901 gctactcaag gatcaaatac tcattcctac gataattcaa cgcatgtgtt aacagtaaca
      961 attagcacgg gtgaatcgct tactatagac atggataatg gtagttatac atttacacca
     1021 ccagcaaata ttaccagctc aataaaccgc ataatcaact atgttctagt tgatggtgat
     1081 ggtgatacgg ctgctgcgac aattactttt aacattgata tttccggatt caatgatccg
     1141 ttggtagtac gtgatgattt agttcttacc aatcaacccg ctgtaagtgg tcaagatgtc
     1201 atttctatac cgacatgggc attattagcc aatgatacgg gtggaagtgg cgtgtcttca
     1261 gtcagcagtg tgacacaacc agttgctgaa ggtactgtag ttctcaatgc tggttctgta
     1321 gcttttaccg aagaatctaa tagtgcagcc gatggtacct acaatggaag tacatctgat
     1381 ccttttaggt acactaatac gacaggttct caatcagcaa ccgctaaggt tgatctggat
     1441 cgtacacaag caggggaaaa taggttagat ggaacctaca gaagcgagat tttattaggt
     1501 agagatactt cgaatgacac aattattggt aatgatggta atgatatact gattggatta
     1561 ggtgggaatg atactttaag tggtggtaat ggtgatgata ttcttgctgg tggcgctggt
     1621 aatgatacgt tagatggtgg tgcaggcaat gatacagcta cttacattga cgccactgca
     1681 ggtgtaactg tttccttaaa taccagttct gcacaaaata ctgttggtgc aggaacggat
     1741 acacttacca atatagaaaa tctaaccggt tccaaattta atgatactct aactggaaat
     1801 aatagtgcca atacaatcaa aggattggag ggtaatgata caataagtgg attaggtgga
     1861 aatgatactt tagatggcgg ttccggagac gatgtcatta ttggtggatt gggtgatgat
     1921 atactcaccg gcggatcagg ggctgatcaa tttgtgcttg tgaaagggca aggtggtgct
     1981 agtgcaggcg cagccccaat cgatactatt acagactttg aagtgaacat tgataagatt
     2041 gttattaacg gtaataacat tactggtgtc agtgtatcca ctccggtttc taacacttat
     2101 actataacgg ttaattattc tgatgctgct acggaacact ttaaagtgac attatccaat
     2161 ggcgctgttt tgaatgattc aggaaaaact catttgaacg gagtggttat aagcggcggc
     2221 accgctacca ttgatggcac aatcgttggc gcagttctat atttggatct gaatgctaat
     2281 aatcaggagg atgaaggtga gcgacttggt attaccaatc aatatggtca tgtagaatgg
     2341 gtcgttgatc tgagtaaatt cgatgtcaac ggtgatggtc agtatgttat aggcgaggct
     2401 cgtgctgttc aaaccggtgg ttttgatata gatacaggtc ttagctatga aataaatctt
     2461 tacgggccag taggttcagc agttatatcg cccttgacaa gtctcttgca agcgcagcta
     2521 gaagccggta tggattatga gacagctaat gctgcgttgg ttgctcgctt agggttacca
     2581 gagggaacac aaattattag tttcaatccg attactggta gtggagaagt cctggctcaa
     2641 aacgcaggtg taatgacagc tgccattcag tttgctgaaa tagccgcaat acactattca
     2701 accgatgaag gtcatgtttc attcgctgtc tttgaggcaa ttagcaaggc attgcttgaa
     2761 cttcctgaag gggtagtcgc tgattttggc gatgagggtt tcttgcagtc catttcaaat
     2821 tatctgggat tagatgctct ggttacatct gatatgattg actatatggc aaccagccag
     2881 aaagcgttag aggccagtat tttgactctt gcgcccggag aagatgctct gacggccatc
     2941 agcaagatac agcatgtgac ccaaggtata tatgcccagg ctattgaaat ggcattgata
     3001 gggtatttgc cattagatgc tcttaaaaac atgagtgctg ttcttaaggc ttatgctgat
     3061 ggagatatta cggatgaaca actcaactcc tttgaagata agctttctgc tgtgattgtg
     3121 aattgggaag ataacaatgt tacagacaca tctcatcagg ctacattgca aacagagcgt
     3181 actgttgatg actcttcagt caaatcagag gtgaatcatg aaatggcgca agaagttaat
     3241 gccgtgatta atgattttat ggatgaacat aatatttctt tgtactatta tgatcaacag
     3301 gctcaaatgc ctcaagaagc acaacaacca acagaggatc aggctgaaga gacggtcatg
     3361 catgacgacg ttgttcaaga tttgttgctt gatgatcata gccttaccat gttggctaat
     3421 aatcccgaat taaatggtgg taatggcaat gatattctgc atggcactac cggaaacgat
     3481 tttataagag gtggtcaagg aaatgatacg atgacaggtg gtggcggtgt tgataccttc
     3541 ttctggttaa gtggcgatga tgatggtggt gtggatacta ttactgattt caaagcaaat
     3601 ccagttgata agtcatccga tgcgagcgtc cttaacttaa gtgatttgct atctgatgct
     3661 gatctggaaa ccaatagttt ggataattat ctgaatgttt ctaccacaga agagggtgac
     3721 acagccatta aagtagaccc taatggtaat ggaaactttg acgctccagc gcaaacgatt
     3781 atattagaag acgtggattt aacagctgtt ttcgctacca acaattcgca tgatattgtg
     3841 aatcaaatga tcgctaatgg aaacttgata gtagaacagt aaggtgaact cattacattg
     3901 gtgaatatgg aattcaccaa tgttttatta attggaaaat atcctcgcga catttttctc
     3961 gctgctatat actcatgcgt tcattcgata ataagccttg caattcattt cacgttatta
     4021 aaatgacgaa aaaaggcaaa aaacgctatg gagcagtatc atgtctaatc cttatatctt
     4081 ggttttatac tattctcgca ctggctcaac ggcacaatta gctcaatata ttgctcgtgg
     4141 ggtggaaagt gtgtctgggc ttgaagccag gttacgcact gtacctcctg tatctaccac
     4201 ttgcgaagcg gtggataagc cggttcccga tgctggtgca acttatgttt ccttagatga
     4261 tttgcgtcat tgtcatgggt tggctttagg cagtcctact cgctttggta atatggctgc
     4321 tccaatgaag tatttttggg atggaactac ttctttgtgg ctgggtggag atctggtgaa
     4381 caagcctgct tgtgtgtttt cttcttcagc cagtatgcat ggtggacagg agactacctt
     4441 aatctccatg atgattcctt tgttgcatca tggcatgatt ttattgggtg ttccttatac
     4501 tgaacccgcc ctaaccagta cgcagtctgg tggtacgcct tatggtgtaa cccatgtggc
     4561 tggtggtgat aatgagaatc cattaagtca agatgagatt tcgttggcta aagctctggg
     4621 ggaaagattg gggcgtgtag caatgggact gaaggtttga tgagagggtt ttaggggttg
     4681 attacccctc tcccttaccc tctccccaaa ggggcgaggg aatgattaat taa
//
LOCUS       DACVWI010000207         4681 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.208, whole genome shotgun sequence.
ACCESSION   DACVWI010000207 DACVWI010000000
VERSION     DACVWI010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4681
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.208"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            37..795
                     /locus_tag="JBH85_12965"
     CDS             37..795
                     /locus_tag="JBH85_12965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HAU0947113.1"
                     /translation="MAEFFLINLYLVNRFQTIVISMILKPGKLLVATAYPDPPFDIEP
                     GDGFDGDLIKEICRILNLQLVQIKYEGENFNDIFLGLANKKYDVVISGTTITPNRSKQ
                     VLFSNPYLQFNQGIAVNTELKPNVSSFEDLTGLVAGIQKGNTSDEVAQDLLRKNILSD
                     IKYYAYNEIELAIQDLSAGKIGLVIKLYPVISCLIRNYTNLAVPLQAETHEKLGIAFA
                     KDNFKLRDKVNIVLADLVQNGTLSRLQHKWISTT"
     gene            1078..4539
                     /locus_tag="JBH85_12970"
     CDS             1078..4539
                     /locus_tag="JBH85_12970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-transporting P-type ATPase"
                     /protein_id="HAU0947114.1"
                     /translation="MLLEYKRIYNMKILKTTEKKSRKPTPKENRALPLQLVQNTEPDR
                     TYYLRSTVEGIGSFLSTRVRELYNTLAMTFSLDSMDWSSFKKYIWPTISSGAALLLGD
                     YLTRSMSEYQTGSPEYDFIFKFLFGTAILGYCALNRITDRKFTSQVELSAAVASEVMA
                     ITYMYSSVFKGTTYLLNDSISDEYSLIAGLGTSALLVPSGISYLTQKIQEFLVRIQYN
                     KGAQRSDTAVISSGLTPISNLYFQINHFIASELMISSRAFQLGLISHNIRYADRIMQK
                     FRNLPALLADLAPSTIKKMRIQQQKLEHDYEYNHKLHQVLRFTADGPMFISIPRYQLR
                     TGDLVYCDSSIDLACVPVSGELLALRRDLKGEFTQTLEQKKFSVNLKAQNGEDVWIEH
                     ETKPDFTSHYKKVDLHAVRDGKQAGVLVGDKLNLYGNDNIFIQIKPEKELLLSSNYEK
                     KAVINEIIAERKQRSVLYSILGSVIMAAFLQRDITAMPAETLRLMFTLFQTMIPFSEA
                     FLRETVNSRLMKKLNSELGDQPFGTIDALRVVDLCNALGGYYRDRFPNGVAIISDKTG
                     TLTTTRMDVLGLWTNDMAPEVQKTLKEKEGLLLPEETQWLQTFEVFCNAFTNNKKELE
                     PEEHAILELFQSLLDNRQCLEVITLGNNHFKKEMISKDIKKEIETFHLGLYRTFGGRF
                     TLVQDGSDHYLVFCGVPKQEAFKETPLLKAYTTMQSRTGVLSRDWCLARGKLSEREFT
                     ILKELFSKDDKKQIEHFILQNKLLLENLMYYGTFIIDNPVKKGAEKFIAQCREISVPV
                     FVATGDTTKAAENIAKVLCPANAGKIVTLRADQIDEKGIEFLNEENYPSDSTVIFSGI
                     NEAILNRFQKLMGREGAKRPVVIFAEMSTEGKGVLARYLKDHHYFVVANGDGTNDVMM
                     MKNSNVVIAHHSDDGTFAPGVDGLTNISEEQLRRLFGSQKTFYELFDINLPKSLFVQK
                     FAPLANSQEKPTMALALKSGKMTFDLAKTVGADVTEMNQQHWYSVVFDLLWLWIAFYE
                     INESSDLPMDNRNINASRLISNTMGIALIIAVFQSLANYALFNESTNLTSMLIMLSFL
                     PLILKSIFSGFRMVQDSLYPQVEVTEVEEEGDTSTNGSVLSYFGTFFSRKPVKQLEGL
                     NCAPALK"
BASE COUNT         1468 a          772 c          948 g         1493 t
ORIGIN      
        1 taaattattc atttaaatca atggcataaa aaatatttgg ctgaattttt tctgattaat
       61 ctatacttag tgaatcgatt ccaaacaata gttatatcta tgattctaaa gccgggaaaa
      121 ttattggtgg ctactgctta tccagatcca ccgtttgata ttgagccagg tgatggtttt
      181 gatggtgatt taataaaaga aatttgtcga attttaaatt tgcagctagt ccagatcaaa
      241 tatgagggag aaaattttaa tgatattttt ttaggcttgg ctaataaaaa atacgatgtt
      301 gtcatttcag gaacgactat tacaccaaac cgctcaaaac aagtactttt ttcgaatccc
      361 tatttacagt ttaatcaggg tatcgcggtt aatactgaat taaagccaaa tgtttcttct
      421 tttgaggatt tgacaggttt ggtggctggt atacagaaag gcaatacctc ggacgaagtt
      481 gctcaggatt tattacgtaa gaacatactc agtgatatta aatattatgc atacaatgaa
      541 atagaattag ccatacaaga tctgtctgcc ggtaaaattg gtttggtcat taaattatat
      601 cctgttattt cctgtttaat tcgaaactat acaaatttgg ctgttccttt gcaggctgaa
      661 acacatgaaa aacttggtat cgcgtttgct aaagataatt ttaaactgcg ggataaagtc
      721 aatattgtcc tagccgatct tgtgcaaaat ggcactttaa gtcgcttgca acataagtgg
      781 ataagtacaa cctagggtaa attaggccaa tgtcagtttc aactcaggag ataaccttat
      841 ttaaagacag gacttacgat aaactccaat ctctttgtta aaaaaagttt ttaactcggt
      901 catttagttt atctaaactc cctcattaaa aacatttttt gcctcgacct tggagttttt
      961 cgtaagtcct gaaagaatct tatttttctt gaatcgttct gtaattattt ttcaaatcct
     1021 cttgaacttt tatacagata agttaattat caggttgagc tctaaagatc caatagagtg
     1081 ttattggagt acaaaaggat ttataacatg aagatattaa agacgaccga aaaaaaatcg
     1141 cgaaaaccta ctcctaaaga gaacagagct ttaccgcttc aattggtaca aaatactgag
     1201 ccggatcgaa cgtattatct gagaagtact gtagaaggca tagggagttt tctttctact
     1261 cgtgtaaggg aactttataa cactttagcc atgacttttt ctttagactc tatggattgg
     1321 agcagtttca aaaaatacat ttggccaacg atatcctctg gagcagcatt gctgcttggt
     1381 gattatctaa cccgatccat gagcgaatat caaacgggaa gcccggaata tgattttatt
     1441 tttaaatttc tttttggtac agcgatatta gggtactgtg ctttaaatcg gataacggac
     1501 aggaaattta cttcccaggt tgaattatct gctgcagtag ccagtgaagt catggcaata
     1561 acctacatgt atagttcggt tttcaaaggc accacttatt tattgaatga tagtatttct
     1621 gatgaatatt cattaattgc cgggctagga accagcgcgc tgctggttcc tagcggaatt
     1681 tcttatctaa cacaaaaaat acaagagttt ttagtgcgaa tccaatacaa caagggtgcg
     1741 caacgctcgg atacagcagt gatttcaagc gggctcacac ccatatccaa tctttatttt
     1801 caaatcaatc attttattgc cagcgaactg atgatcagtt cacgcgcatt tcagctgggg
     1861 ctcatttcac acaacattcg ctatgcggat agaataatgc agaaatttcg taacttgcct
     1921 gcattattag cggatttggc accatcgacg ataaaaaaaa tgcgtatcca gcaacagaag
     1981 cttgagcatg attacgaata caatcataag ctacatcagg ttttaagatt tacagcagat
     2041 ggcccaatgt ttataagtat cccaaggtat caattacgca caggggatct ggtttattgt
     2101 gatagcagca tcgatttggc ttgtgtaccg gtttctgggg agctgcttgc tttaaggcgt
     2161 gatttaaaag gagaatttac tcaaaccctg gaacaaaaaa aatttagcgt taacctgaaa
     2221 gcccaaaatg gggaagatgt ttggatagaa catgaaacca agcctgattt tacctcgcat
     2281 tataaaaagg tggatttgca cgctgttaga gatggcaaac aggcaggagt attggtaggc
     2341 gataaattaa atttatatgg taatgataat atttttattc aaatcaaacc cgagaaagag
     2401 cttttgttaa gcagtaacta tgaaaaaaaa gcagtcatta atgagattat tgccgaacga
     2461 aaacaaagaa gtgttttata ttctatttta ggctccgtta tcatggctgc ttttttacaa
     2521 agggatatta ctgcaatgcc tgcagaaacc ctaaggctca tgttcacact ctttcagact
     2581 atgattcctt tttctgaagc ttttttacga gaaactgtga atagccgttt gatgaaaaaa
     2641 ttgaatagcg agctcgggga tcagcctttt ggaaccatag atgctcttcg tgtggttgat
     2701 ttatgtaatg ctcttggcgg ttattatcgt gacagatttc ccaatggtgt tgccattatt
     2761 tcagataaaa ccggaactct tacaactaca agaatggatg tattagggtt atggactaat
     2821 gatatggctc ctgaggttca gaagacatta aaggaaaagg agggtttgct cctgccagaa
     2881 gaaacccaat ggctgcaaac ttttgaagtg ttttgcaatg cgtttactaa caataaaaaa
     2941 gaattggaac ctgaggaaca tgctattttg gagttatttc aatccttact cgataatcgg
     3001 cagtgtctgg aagtgattac tttagggaat aatcatttta aaaaagaaat gatctctaaa
     3061 gacattaaga aagaaattga aacgtttcat ttgggtttat atcgtacgtt tggcgggcgc
     3121 tttactttgg ttcaggatgg ttctgatcat tatctggtct tttgcggagt gcccaaacaa
     3181 gaggctttta aggagactcc tttgctaaaa gcctatacga ctatgcaaag tcgtactgga
     3241 gtgttatctc gtgattggtg tttggctcga ggtaaactca gtgaacgcga gtttactatt
     3301 ttgaaagaat tatttagcaa ggatgataaa aagcagattg agcattttat tttgcaaaat
     3361 aaattattgc tcgaaaattt gatgtattac ggtactttta ttattgataa tcctgtaaaa
     3421 aaaggagcag aaaaatttat tgcccaatgt cgggaaatat cagttccagt ttttgtagca
     3481 acaggagata cgaccaaggc agcagaaaat attgctaaag tattgtgccc ggctaatgca
     3541 ggaaaaattg ttacgctgcg tgccgatcag attgacgaaa aaggtattga atttttaaat
     3601 gaagaaaatt atccctctga ctctacagtt atattttcag gtattaatga agcgatattg
     3661 aacagattcc aaaaactgat gggtagagaa ggggcaaaac gccccgtcgt tatttttgct
     3721 gaaatgagta ctgagggaaa aggtgtttta gctcgttatc ttaaggacca tcactatttt
     3781 gttgttgcca acggggatgg tactaatgat gttatgatga tgaaaaattc taatgtggtg
     3841 atagcgcatc attcagatga tggaactttt gctccaggag tggatggctt aaccaatatt
     3901 agtgaggagc agctaagacg gttgtttggt tcccagaaaa ctttttatga actgtttgac
     3961 attaatctac ccaaaagcct gttcgttcaa aaatttgccc ctctagccaa ctcacaagaa
     4021 aagccaacca tggctttggc actcaaaagt ggaaaaatga cgtttgattt ggctaaaaca
     4081 gttggagcag atgtcacaga aatgaatcag cagcattggt atagcgttgt ttttgactta
     4141 ttatggttgt ggattgcttt ttatgaaata aatgaaagct ccgatttgcc aatggataat
     4201 cggaacatca atgcttcaag attgatttcc aatacaatgg ggattgcctt aataatcgct
     4261 gtttttcaat cccttgctaa ttatgctctg tttaatgaat ctacgaactt gaccagtatg
     4321 ctgattatgt tgagtttttt gcctctaata ctaaagagta ttttctcagg ttttagaatg
     4381 gttcaggaca gcttgtaccc tcaggtggaa gtaaccgaag ttgaggaaga aggagataca
     4441 agtactaatg gatctgtcct aagctatttt ggaacttttt tttcacgcaa gccagtaaag
     4501 caattggagg gtttaaactg tgctcccgca ttaaaatagc cccttgcata aaggggctgt
     4561 ttttatttta tcgctcggtc ataaatattt ttgtgatgct tattgacctc atgtaaactg
     4621 tgtatttttt aattttaaag ataatcatac agtttcttat gattaatttt tccactattg
     4681 g
//
LOCUS       DACVWI010000208         4665 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.209, whole genome shotgun sequence.
ACCESSION   DACVWI010000208 DACVWI010000000
VERSION     DACVWI010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4665
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.209"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..658
                     /locus_tag="JBH85_12975"
     CDS             <1..658
                     /locus_tag="JBH85_12975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HAU0947115.1"
                     /translation="ISTAEDPVEIKVPGINQVNINPKAGLTFSGALRSFLRQDPDIIM
                     VGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETLNRLVNMGIPTFNIASSVTLIIA
                     QRLARKLCNQCKAVRDDFTNQGLIELGFKEADLVNLKLYKAVGCEQCTSGYRGRVGLF
                     EVLPMTKELGQLIMSGGNSLDILKLAQSEGMLTIFQSGIEKVKEGITTIEEVNRVTVD
                     "
     gene            664..1884
                     /locus_tag="JBH85_12980"
     CDS             664..1884
                     /locus_tag="JBH85_12980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HAU0947116.1"
                     /translation="MDKNSPPLLTFHYQGINKAGQKMEGDIQARSLAIAKADLRKQGI
                     VTNKVVKKRKPLFDRKNKKITQADITVFSRQLATMIESGIPLVQAFDIVAKGQSNKRL
                     KDLIETIKHDIETGLTLAESLIKHPLYFNELFCNLVDAGEKSGSLDIMLDKVATYKEK
                     IEIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITM
                     SEFMQAYWYIIFGALGGIVYSFFYAKNHSLEFAQTIDRVMLKFPVIGPILEKAAIARF
                     ARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATGQQMFTAMENTHLFP
                     NMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILGILVGGLV
                     VAMYLPIFKLGSAV"
     gene            1924..2793
                     /locus_tag="JBH85_12985"
     CDS             1924..2793
                     /locus_tag="JBH85_12985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HAU0947117.1"
                     /translation="MSMINALIINYPWFMYLVVGLFSLAVGSLLNVIIYRLPIILQEE
                     WKEQCCELFHLEQRKEKIKLNLFLPRSFCPHCKAMVKAWQNIPLLSYILLRGRCYQCD
                     SPISIRYPFVETLTTVLSLYASWHFGFTIQLLFALLAIWILISLVFIDLDHQLLPDSL
                     TLGLLWIGLIANTQNVFVSLDVAVLSCAGAYLALWLFINLFYLMTGKVGMGHGDFKLF
                     AAFGAWLGWMYLPLILLISSITGAIIGLIYLKINGKSRDTAIPFGPFLCISGLIAMFW
                     GDSIINWYIGYWM"
     gene            complement(2807..4045)
                     /locus_tag="JBH85_12990"
     CDS             complement(2807..4045)
                     /locus_tag="JBH85_12990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HAU0947118.1"
                     /translation="MWTYIFRIGIAMNQNDASKKDNDNSNQLDTELIGSYQSITIGFS
                     KDELASFSKIGQHKHYTAGSIIYNENDLADSFFIIIDGVAEIFKKTIDEFGEHNIHIL
                     ATLSKDDVVGEMALIENSRRSASVKAKTDLSVIEYPLEVVKAKPKLNLMLIKNMAQIL
                     SRRLRFTNEVTVKNMQQALKEASGRNTLGVFIIALLWIICLYTLSLHFLVTVIHQVTV
                     TTVLSICLISIFAVAILIAMHFTGLPYSRFGITAKDWGKTILEALAFTIPIMLFVLII
                     KVFFIIGIDHLDNTPIFSGTKRFLVNNEVDWEYYFAMIFLYSLFAPIQELMARSALQS
                     TFFHFLPGEKLFRQWNGIFLSNLIFATMHTHLGLTFASLTFIAGLFWGWLFHRQKSLL
                     GVSVSHVILGVWSLFIVGLR"
     gene            complement(4120..4659)
                     /locus_tag="JBH85_12995"
     CDS             complement(4120..4659)
                     /locus_tag="JBH85_12995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014841653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947119.1"
                     /translation="MQANRVSNQPGDEVLKKEILYYFELATIFKKLKNHKKYPYAEIM
                     MIECYRTAANLDDSAANFQLGQIFLDEAKYRQKLDNEGIFNSQANLKRAQQLFDEAHA
                     HLIAAEKLGHVGAKRLRGLCIINGWGVESDKNAGFELVVDSIEQEGSWDKIPQIFASM
                     GLNKPEFFSAIMQRRKGAS"
BASE COUNT         1468 a          785 c          890 g         1522 t
ORIGIN      
        1 tatttcaaca gctgaagatc cagttgaaat caaagtacct ggtatcaatc aggttaatat
       61 taatcctaaa gctggcctaa ccttttccgg tgcattgcgt tcgtttctaa ggcaagatcc
      121 tgatattata atggttggtg agatacgaga ccttgaaaca gcagagattg ctgtaaaagc
      181 tgctcagaca gggcatttgg ttctttctac tctgcacaca aacagtgccg ctgaaacttt
      241 aaatcgttta gtaaacatgg gaataccaac ttttaacatc gcgagttcgg ttaccttaat
      301 tattgcgcaa aggctggcaa gaaaattatg caatcaatgt aaggcagtgc gagatgactt
      361 taccaatcaa ggtttgattg aactaggttt caaggaagct gatctggtta atcttaaatt
      421 atacaaagca gttggttgcg agcaatgtac aagtggttat cgcgggcgag tcgggttgtt
      481 tgaggtttta ccgatgacga aagagcttgg ccaattgatt atgtcaggtg gtaattcgct
      541 ggatatatta aagttagctc aatcagaagg tatgctgact atttttcaat cgggtataga
      601 aaaagttaag gaaggaatca cgaccataga ggaggtcaat cgggtaaccg ttgattaatt
      661 tggatggata aaaatagccc acccctatta acctttcatt atcaaggcat taataaagcc
      721 ggtcaaaaaa tggagggtga tattcaagcg agaagcttgg caatagctaa agctgatttg
      781 cgtaagcagg ggattgttac caataaagta gtaaaaaaaa gaaaaccttt gtttgataga
      841 aaaaataaaa aaatcacaca agcagatatt actgtgttta gccgccaatt agcgacgatg
      901 atcgagtcag gaataccatt agtgcaagca tttgatattg ttgccaaagg acaaagcaat
      961 aaaagactta aagacttaat agaaacaatt aagcacgata tcgaaacggg gctaacgctg
     1021 gcagaatcct taattaaaca tccactctat tttaatgaat tattttgtaa tcttgtcgat
     1081 gctggtgaaa aatcaggctc attagatatc atgcttgaca aggttgcaac gtataaagaa
     1141 aaaattgaaa tcataaaaaa gaaaataaaa aaagctctca cttacccaat tgctgttatg
     1201 gttgtcgcac ttttggttac tgcgggatta ttaatctatg tggttcctca atttgaatcg
     1261 ttgtttaaag gatttggagc tgatttgcca gcgatgacta gagctgtgat cactatgtct
     1321 gaatttatgc aggcttattg gtatattatt tttggagctt tgggtgggat tgtctatagc
     1381 tttttttatg ctaaaaatca ttctttagag tttgcgcaaa ccattgacag agtgatgcta
     1441 aaattccctg taattggccc tattttagag aaagcagcaa ttgctagatt tgcgaggaca
     1501 ttatccatta cttttgctgc tggattaccc ctggttgaag cattgaaatc tgtagctgga
     1561 gcgaccggga atattattta tgccaaggcg actgataaaa tcagagaaga agttgcaaca
     1621 ggacagcaaa tgtttactgc tatggaaaat actcatttat ttccaaatat ggtaattcaa
     1681 atggtagcaa ttggtgagga atcaggtgcc cttgaaaaaa tgttaagcaa agtggctgat
     1741 ttttatgagg aagaagtaaa taatgctgta gatgccctga gtagtttatt ggagccgata
     1801 attatgtcaa tattgggtat actggttggg ggattggtgg tggctatgta tttacctatt
     1861 ttcaaactgg gttctgctgt ttaaacagat cctatttaat ttaatcatac aatataggca
     1921 aacgtgtcaa tgataaatgc actaataatc aattatccat ggtttatgta tttagtcgtt
     1981 ggactctttt ctctagccgt tggaagtttg cttaatgtga taatctatcg cttaccaatt
     2041 attttgcagg aagagtggaa agagcaatgc tgtgagctat tccatcttga acagcgaaaa
     2101 gaaaaaataa aacttaattt atttttacca cgttcttttt gtcctcattg taaagcgatg
     2161 gttaaagcgt ggcagaatat tcctctgtta agctatattt tgttaagagg acgctgttac
     2221 caatgtgata gtccaatttc aatccgctac ccttttgttg agacgttgac cacagtttta
     2281 tccttatacg ccagttggca ttttgggttt acaatacaat tattatttgc tttattagct
     2341 atctggatat taatatcact tgtttttatt gatcttgatc atcaattact ccctgatagc
     2401 ctcactttag ggctcttatg gattggcctt attgctaata cccagaatgt atttgttagt
     2461 cttgacgttg ctgtattaag ctgcgctggc gcttatttag ccttatggct attcattaat
     2521 ctgttttatc tgatgacagg taaagtaggt atgggacatg gagatttcaa attatttgca
     2581 gcatttggtg cctggcttgg atggatgtat ttaccattaa ttctactaat atcttcaata
     2641 acgggggcta tcattggttt gatttattta aagataaatg gtaaatcaag agatactgca
     2701 ataccatttg gcccttttct ttgcatttct ggattaatag ctatgttttg gggagactca
     2761 atcatcaatt ggtatatagg ttattggatg taaaatgttg attagcttag cgcaacccaa
     2821 caataaatag agaccacacg cctaaaatca catgagaaac agatactccc aaaagagatt
     2881 tctgtctgtg aaataaccat ccccaaaaaa gtccggcgat aaaagttaat gaggcaaagg
     2941 ttagccccaa gtgagtgtgc atagttgcaa agattagatt ggacagaaaa attccattcc
     3001 attgacgaaa taatttttcc ccgggtaaaa aatgaaaaaa agtagattgt aaagcacttc
     3061 tggccattag ttcttgaatg ggggcaaaaa ggctatataa aaaaatcata gcaaagtaat
     3121 attcccaatc cacttcatta tttaccaaaa agcgttttgt tcctgaaaat ataggagtat
     3181 tgtccagatg atcgatacct attataaaaa aaaccttgat aattagtaca aaaagcataa
     3241 taggaattgt aaaagctaat gcttccaaga tagtttttcc ccaatctttc gcagtgatac
     3301 caaatctgga atatgggaga ccagtaaagt gcattgcaat gagaattgct acagcaaaga
     3361 ttgagattaa acagattgac agtacggtag tgacagttac ctgatgtatt acagtaacca
     3421 ggaaatgtag agataaagta tagaggcaaa taatccatag cagagctatg ataaataccc
     3481 ccaatgtatt gcgccctgat gcttctttga gagcttgctg catatttttc acagttactt
     3541 catttgtaaa acgaagtctc ctggaaagta tttgagccat atttttaatt aacatcaagt
     3601 taagctttgg tttagccttt accacttcta acggatattc tataacacta agatcagttt
     3661 tagcctttac cgacgcagaa cgtcgactat tttctatgag agccatttct cctacaacat
     3721 catcttttga taaggtagca agaatatgga tattatgctc accaaactca tcgatagttt
     3781 ttttaaatat ttcggcaaca ccatcgatta taataaagaa tgagtcagcg agatcatttt
     3841 cattataaat aatgcttcca gcagtatagt gcttatgctg accaattttt gaaaaactgg
     3901 caagttcatc tttagagaaa ccaattgtta ttgattggta acttcctatt aattcagtat
     3961 ccaattgatt ggagttgtca ttatcttttt tagaagcatc attttggttc attgctattc
     4021 caatcctaaa tatgtaagtc cacatttact ctatttaatg caacgataat atatacctca
     4081 taaataattt ttgattagga aattaatcat gaataaattt taagatgctc cttttcttct
     4141 ttgcataata gctgagaaaa attctggttt atttaatccc attgacgcaa atatttgagg
     4201 tattttatcc caacttccct cttgttcaat actgtccaca accaactcga atccagcatt
     4261 cttatcgctt tcaacacccc agccgttgat aatacatagt cctcttaatc tcttggcacc
     4321 tacatgcccc agtttttcag ctgcgattaa atgtgcatgg gcctcatcaa aaagttgctg
     4381 tgctcttttt aagttggctt gactattaaa tattccttca ttatccagtt tttgcctgta
     4441 ttttgcttcg tccagaaaaa tttggcctag ctgaaaatta gctgccgagt catcgagatt
     4501 agctgctgtt ctataacact caatcatcat gatttctgcg taagggtatt ttttatgatt
     4561 ctttaatttt ttaaaaattg tggctaattc aaaataataa aggatttctt ttttaagaac
     4621 ttcatcgcca ggttgattac ttactctatt ggcttgcata gcctt
//
LOCUS       DACVWI010000209         4663 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.210, whole genome shotgun sequence.
ACCESSION   DACVWI010000209 DACVWI010000000
VERSION     DACVWI010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4663
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.210"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1473
                     /locus_tag="JBH85_13000"
     CDS             <1..1473
                     /locus_tag="JBH85_13000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HAU0947120.1"
                     /translation="YQQLEQHFKKYYDFENLAAIVSWDEATMMPAGGGQARAEALATL
                     SAVQHEWLTNKKIGDWIKRAKDLPGLSLWQRRNVYWIDRQYQQATCIPAQLIEEFTNE
                     SLICVQAWRELRAKNDWRSFKPYFKKLFEKVKMIADIKSQRFNKPCLDVLIDEYSPDL
                     DCKAITPVFDILKQEIPAIIPNVIEKQKSRDIKVISGDFSAEKQKQFGIEIMSRLGFD
                     FNRGRLDVSHHPFCGGISDDVRMTTRYSEQEFISSLMAITHETGHALYEQGLLKEWSR
                     QPVGHSLGMSVHESQSLLIEMQICRSLEFISFLVPIAKKYFKEAQNITEENLYFHCTK
                     VQPDLIRVEADEVTYPLHVILRYEIEQLLFSSEITIDDLPEVWDNFMRKYLGLSTKGN
                     DKNGVMQDVHWPSGNFGYFPAYTFGALIAAQLFSAAKKAIPDINDQIKSGDFQSLLIW
                     LRENVHQKAKLFSYQELLRQATGEELNPQYYLAHIRQRYL"
     gene            1534..2037
                     /locus_tag="JBH85_13005"
     CDS             1534..2037
                     /locus_tag="JBH85_13005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947121.1"
                     /translation="MLFFSSAMSKHKLTFTKLSDCMKYLDLAATWAEEEWGYIRNKGL
                     EFRKKILSDLKEHTYIGTFNGQPIAMFVLFDKEMSPEFNHGRFKPPVVNELMYVYIDK
                     PYRGLGFGKQIIDEAKQLASDSKSEYIMLDTLKPGLNRFYEKSGAKVIAENQLFSHPT
                     DVLTIKI"
     gene            2327..3838
                     /locus_tag="JBH85_13010"
     CDS             2327..3838
                     /locus_tag="JBH85_13010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1148 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947122.1"
                     /translation="MYMDLGSDNMALSKEIQNKSLRSLIQKYARQLNETDKKLIELIN
                     NLAAADDIPLYAQNQNVINLLIKTIKDSQSEHNPDLEGTSYFIYGLITAEMEAQSEIN
                     RQRHLMQGRFDETALHLRTERDQMQDHDMTLLMPKSQGRIVVMAVLNRYDSHSANAII
                     ETLASDVFNPEVHYIMIPVGPGHWRGVYLSKPQGGTSDTAYDLELFDPYGPEGAAVLD
                     DYVLDLLNQCGVPKELVNIRHTGPKHPQGDAYSCGDFTCAYSHKKMKEFGAPEGSYNP
                     ILIDTLDNLGNEDNVLRMTTREETRALVDKDRGRQHIHPAVQSMRAADKKEAISSTDK
                     LKTGAKGISFEIENANKSKKATIRQTVKESQLSPAMRTGLIIGGGTFTSGGVGAIIGG
                     LMGFFLLPGLGVLMGAIAGAFIGVGAGLLISGIIANAFWNSTPLNIVKAHESNTEIQR
                     VDLKSDSAGKPDKECSEKDEKPIHSPTLFFTLATQERNTNDMADELSSSGPKT"
     gene            4016..>4663
                     /locus_tag="JBH85_13015"
     CDS             4016..>4663
                     /locus_tag="JBH85_13015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947123.1"
                     /translation="MTVQKYFPWFNEAWQSYSLCRSSLWWPLSYLILTPLAVFIVFGL
                     IIPLGLNQLGWINFDHALINYPYLLLIAGLLYFALFPFLDALYQMIKAHLDGKPVKMN
                     TDDIDFINPNTSKVMGMSMGPILLTIIIMEIAGSFFKPFRALVLLAYVLAIFTPILSV
                     NNPESPMKKGLESLQFALNNKKLVAKVWGLRLLILLSLIFPWVIIGITGEHAILKI"
BASE COUNT         1465 a          782 c          975 g         1441 t
ORIGIN      
        1 tatcaacaat tagaacaaca ttttaaaaaa tattacgatt ttgaaaattt agcagccatt
       61 gtttcctggg atgaagcaac gatgatgcca gccgggggtg gtcaggcgcg tgcagaagcg
      121 ttagccactt taagtgctgt acaacatgaa tggttaacta ataaaaaaat aggtgactgg
      181 ataaaacggg caaaagattt accaggttta tcattatggc agcgacgaaa tgtttattgg
      241 atcgataggc aatatcagca agcaacctgt attccagcgc aactgataga agagtttacg
      301 aatgaatctt tgatatgtgt tcaggcatgg cgggaattac gagctaaaaa tgattggcgc
      361 tcatttaaac cgtactttaa aaagttattt gaaaaagtaa aaatgattgc cgatattaaa
      421 tcacaaagat ttaataagcc ttgtttggat gtcttaatcg acgaatactc cccggatttg
      481 gattgcaagg ccatcacccc ggtttttgat atcttgaaac aagaaatacc agccattatt
      541 cccaacgtta tcgaaaaaca aaaaagtcga gatattaaag tgatttcagg tgatttttct
      601 gcggaaaagc aaaagcaatt tgggattgaa atcatgtctc gattggggtt tgactttaat
      661 cgtggtcgat tagatgttag ccaccacccg ttttgtggtg gtatttcaga tgatgttcga
      721 atgacaaccc gatacagtga gcaggaattc atatcttcct taatggcaat tacccatgaa
      781 acaggtcatg ctctgtatga gcaaggcttg ctaaaagaat ggagtcggca acctgttggc
      841 cattcattag gaatgtctgt gcatgagagc caatcgttgc ttattgagat gcaaatttgt
      901 cgaagtttgg agtttataag ttttttggtt cctatcgcga aaaaatattt taaagaagct
      961 caaaatataa ctgaagagaa tctttatttt cattgtacga aagtacaacc tgatttaatt
     1021 cgtgttgagg cagacgaagt cacttatcca ctacatgtaa tactgcgtta cgaaatcgaa
     1081 caacttttgt tttcttcgga gattaccatt gatgatttac cagaggtctg ggacaacttc
     1141 atgagaaaat atttaggact atcaacaaaa gggaatgaca aaaatggtgt gatgcaagat
     1201 gtgcattggc cttctggaaa ttttggctat tttcctgctt atacgtttgg tgcattaatt
     1261 gccgctcaat tgttttcggc ggccaaaaaa gcaatccctg atatcaatga tcaaatcaaa
     1321 tcaggtgact ttcaatcgtt gttaatttgg cttagggaaa atgttcatca aaaagcaaag
     1381 ttattttctt atcaagagtt attgcgtcaa gcaacaggcg aagagttaaa tccgcaatat
     1441 tatttggctc atatcagaca gaggtattta taaaacgggg tggccttaga taaaatttgc
     1501 aggttgtatc attttaatta agagggttat cagatgttat tttttagttc agcaatgtcc
     1561 aaacacaaac tcacttttac taaactgtct gattgcatga aatatttgga tcttgccgca
     1621 acatgggcag aggaagaatg gggatatatt cgtaataaag ggctagagtt tcgtaaaaaa
     1681 atcctgtctg atttgaaaga gcatacttat ataggaactt ttaatggaca acccattgcc
     1741 atgttcgttt tattcgataa agagatgagt ccggaattta accatggaag atttaaaccc
     1801 ccggtagtga atgagttgat gtatgtctat attgataaac catatagagg gctgggtttt
     1861 ggaaagcaaa ttattgatga ggcgaaacaa ttagcaagcg attcaaaatc ggaatacatt
     1921 atgttggata ctttaaaacc tggcttgaat cgattttatg aaaaaagcgg ggcaaaagtg
     1981 attgcagaaa atcaattgtt ttcgcatcca actgatgtat taacaataaa gatataagct
     2041 gtgatctcta tcacgggtaa gtaatgctct tttttatgtg gacatgagca tgttatcgtg
     2101 tttaagttat catatattca atgggtgcaa taattaatca tgagagtgaa tttcttttcg
     2161 gttaattatt ttttatttca ttagacctct tgccctaaaa caaaagagac aggttaggca
     2221 agaggtctat ttcagagtca aaagcattgc gtaactgctt caggtggagc atacattatt
     2281 aaagaggagg gaagctttat tttttcttaa ttgttttata tagcatctgt atatggattt
     2341 agggagcgat aatatggcat taagtaaaga aattcagaat aaaagtttaa gatcattaat
     2401 ccaaaaatac gccagacaac ttaatgaaac agacaagaag ctcatagaac ttattaataa
     2461 tctcgctgca gcagatgata ttcctttgta tgcccaaaac caaaatgtta tcaatttgtt
     2521 aattaaaacc attaaagaca gccagtctga acacaatccg gatttggagg gaacttccta
     2581 tttcatttat ggattgatca ctgcagaaat ggaggctcaa tctgaaataa accgccaaag
     2641 acatcttatg cagggacgtt ttgatgaaac agcattgcat ttaagaacag agcgtgatca
     2701 aatgcaagat catgacatga ctctgctcat gccaaaatct caggggcgta tcgttgtgat
     2761 ggcagttctc aatcgctacg actctcattc tgctaatgcg attatagaaa ctttggcaag
     2821 tgatgtattc aatcctgaag ttcattacat tatgatacct gttggacccg gacattggcg
     2881 aggagtttat ttaagcaaac cccaaggcgg cactagcgat acagcttatg atcttgaatt
     2941 atttgaccct tatgggcctg aaggcgctgc agtacttgat gactatgtac ttgatttatt
     3001 aaaccagtgt ggcgttccca aagagcttgt gaatatacgg catacgggtc cgaaacatcc
     3061 gcaaggtgat gcttactcat gtggggattt tacttgtgcc tatagccata agaaaatgaa
     3121 agaatttgga gctccagaag gtagttataa tccgattctt atcgatacgc tggataattt
     3181 aggtaatgaa gataatgtgc ttcgtatgac aacgcgcgaa gaaacgcgag cgcttgttga
     3241 taaagacagg ggaagacagc acattcatcc tgccgttcag tctatgcggg ctgccgataa
     3301 aaaagaggca atatcgtcca ctgacaaact taaaacagga gcaaaaggga tatcctttga
     3361 aattgaaaat gctaataaat caaaaaaagc aactattcgc caaactgtta aagaaagtca
     3421 attatcaccg gctatgcgaa caggtcttat tataggtgga ggtacattca cctcaggagg
     3481 agtaggggct attattggcg gactcatggg ttttttcctt ttgccaggac tgggtgtatt
     3541 aatgggggcg atagcgggag cttttattgg tgtaggagca ggtttgttga tatcaggtat
     3601 tatagccaat gcattttgga atagtactcc attaaatatt gtaaaagccc atgagagtaa
     3661 caccgagatt caaagagtcg atttaaaatc cgactctgca ggtaaacctg ataaagaatg
     3721 ttcggaaaag gacgagaagc ctatccacag ccctacttta tttttcactc tcgctacgca
     3781 agagagaaac acaaatgaca tggccgatga gttgagttca agcggtccta aaacatagaa
     3841 aaacaatcat aaatttattt tatggatacc gctggcaagc agcggtacgt aggcggtgag
     3901 gatgaattgt taacatacct ttcaatatgt caattcagca tttgtgagta ttcttttaac
     3961 tatggaatta acgtgctaat ataaatcatt taatataatt agtgtccgac atttcatgac
     4021 tgtgcaaaaa tacttccctt ggtttaatga ggcatggcaa tcttactcac tttgccgctc
     4081 ttcgctatgg tggcctttaa gttatcttat attaacacca cttgctgtct ttattgtttt
     4141 tggattaatt attccattag ggttaaatca gttaggttgg attaattttg accatgcgtt
     4201 gattaattat ccctatcttt tgctaatagc agggctactt tatttcgctc ttttcccttt
     4261 tcttgatgca ttatatcaga tgattaaggc ccatctggat ggcaaacccg tcaaaatgaa
     4321 tacggatgat atcgatttta ttaatcccaa tacttcgaaa gtaatgggca tgtctatggg
     4381 ccccatttta ttgactatta ttatcatgga gatcgctggc tctttcttta aacctttccg
     4441 agcattggtg ctgttagctt atgtattggc tatttttacg cctattttaa gtgtaaataa
     4501 tcctgaatca cctatgaaaa agggactcga gtccttgcaa tttgctctta ataataaaaa
     4561 attggttgcc aaggtttggg gtttacgtct tttgattctt ctgtccttga tctttccctg
     4621 ggttattata gggattactg gtgagcatgc gattttaaag att
//
LOCUS       DACVWI010000210         4657 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.211, whole genome shotgun sequence.
ACCESSION   DACVWI010000210 DACVWI010000000
VERSION     DACVWI010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.211"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..758
                     /locus_tag="JBH85_13020"
     CDS             <1..758
                     /locus_tag="JBH85_13020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HAU0947124.1"
                     /translation="ANITIYPTRILFGIIIFCFLYLVSRAISTSISRHQQFENEEETQ
                     VAIASILTYVGFSIAVISGLLVAGFNFTGLAIIAGALSVGIGLGLQSIVNNFVSGIIL
                     LIEKPIRPGDRINIDGVEGFVKKIRVRSTQILTPVNEDIIIPNSDLITRRVVNYMLTD
                     NYWRVNCEVSVAFGTNLNLVKDILLEIANKHDDVVKSGRNKPVVLFTSFADSALTFQL
                     WCMIKDVNKKSTVKSELNFSIEEAFRKHDISIT"
     gene            931..3075
                     /locus_tag="JBH85_13025"
     CDS             931..3075
                     /locus_tag="JBH85_13025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercuric reductase"
                     /protein_id="HAU0947125.1"
                     /translation="MIKKIHRWLPLLVLIGLLVLFFSLHLDKYLSFNALRENHALLIA
                     WTQTHYFIAPLIFIVFYTTAVAISIPGAVLLTLTGGFLFGVFWGVLFVVISATLGATI
                     LFFAVRTALGDWFAQKASGWIERMRQGFQHNAFSYLVTLRLIPLFPFWAVNIVPALLN
                     IRAKTFITATFIGIIPGTTVYVMVGNGLSQIFAANQTPNLGIIFELQILGPLLALAVL
                     SLMPVLYQFSTRKHQNHHSFSDISRVINCDLAIIGGGAGGLSLASGCSQLGLKVVLVE
                     SGKMGGDCLNYGCIPSKSLLAAAKTFYYAKHATHFGVHTEAIKINFQQVMQHVHQIID
                     NISEHDSVQRFESLGVQVIKQVGKFLNPDTLQAGDSIIKAKRFVVATGSSPFIPPIPG
                     LDAVSYFTNETIFDLKEQPEHLIVIGGGPIGCELAQAFAMLGSKVTLLEGLNLLPKDD
                     PDCVAVLRTQMKSMSIVIHEQIEITQINSHPDTGISVCFEFQNTQFTITASHLLIATG
                     RRANVKPLDLEKAGVKLTSKGVEVNKYLQTSNKKIYALGDVTGLYQFTHMASYQASIV
                     LRNIVFKLPSKVDYRAIPWVTYTDPELAHVGIGVSDALKHPDAQIIEWPFVDNDRAQT
                     ERSLNGKIKIITDKKARILGVTIVGPHAGELILPWVMAIREKKNLRSFTDVIVPYPTL
                     SEISKRVAGSFYAPKLFSNKTRMLVRWLQKIG"
     gene            complement(3131..3850)
                     /locus_tag="JBH85_13030"
     CDS             complement(3131..3850)
                     /locus_tag="JBH85_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947126.1"
                     /translation="MLEMIHLLINWVNLKLTMRASTINTILFLFLGVWGDLSHATKSI
                     HTNQVDSLFNIVKMSTVLSKDSLISPYNYLLTQPLMTTTLEKYYQRTSRIKVITAFTN
                     PHNNTYSRIIILYVDRNKKRNNVELAQKKNEIIPVELAAININFEELPEKLITDITHT
                     NIPFGKLLTQYHLKVFSKDRRYFSVICNNMLASLIHCKPNKKLYGRTNVLARVDNKKW
                     VAHVIEILSDEKEVKHRLRLN"
     gene            complement(3938..4627)
                     /locus_tag="JBH85_13035"
     CDS             complement(3938..4627)
                     /locus_tag="JBH85_13035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009759800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947127.1"
                     /translation="MRDRLAQVPSQNYLRDWIYGGIDGVVTTFAIVSGVVGGQLSSLV
                     ILILGFANLLADGFSMAASNYLGTKSEVDQFQRYKTIEEKHIDFIPEGEKNEIKQIFQ
                     NKGLHGQTLDQVVEEITANRALWIKTMLQEEYGLPATLRFPLKSALYTFSAFLLFGII
                     PLIPYVLVMNNSFIWSCFFTAITFFVIGSIKSHWSTKSWLYSGFETLIIGTVTASLSY
                     GIGLFLHHYLT"
BASE COUNT         1423 a          844 c          880 g         1510 t
ORIGIN      
        1 tggcaaatat tacaatttat ccaacgcgca ttctcttcgg aatcataatt ttttgttttt
       61 tatatttggt gtctcgcgcc atttcaactt caatcagtcg tcaccaacag ttcgaaaacg
      121 aagaagaaac tcaggtagct attgcttcca ttttgactta tgttggattc agtattgctg
      181 ttatttcagg cttactcgtc gcgggcttta attttactgg acttgccatt atcgctggag
      241 cactttctgt aggaattggt cttggactgc aaagcatagt taataatttt gtatcaggta
      301 taattttgct tattgagaaa ccaataagac ctggagatcg aattaatatc gatggtgttg
      361 aaggatttgt aaaaaaaatc agagtcagat caacacaaat tctcactccg gtaaatgaag
      421 atattattat tccaaactct gatttaatta cacgccgtgt tgtcaattat atgctgacag
      481 ataattattg gcgtgttaat tgtgaggtta gcgttgcttt cgggacaaac ctgaatcttg
      541 ttaaagacat ccttttggag atcgctaata agcatgatga tgttgtaaaa agtggcagaa
      601 acaaacctgt tgtgttattt accagttttg ccgacagtgc attaactttt caactctggt
      661 gtatgattaa agatgtaaat aaaaaatcga cagtcaaaag tgaattaaat ttctctattg
      721 aggaggcttt tcgcaagcat gacatttcaa taacatagtc ttaatgtgat tttcatattt
      781 gaattggaga ttaaatactt tccctactct ggaaaataat gcttggtatc attaaaccct
      841 atcgataatt aagatatgac ctcaaagtaa attcctgtta ggatcttcat ataatttata
      901 tcagcttatc gggttaaagg aataacatga atgattaaaa aaatacatcg ttggttgcct
      961 ttgcttgtat taatcgggct attggtgctt ttcttcagcc tacaccttga taaatactta
     1021 agttttaatg cgttaagaga aaatcatgct ttactcattg cgtggaccca aactcattat
     1081 tttattgcgc cactgatttt tattgttttt tataccactg ctgtagccat ctctattcca
     1141 ggagcagttc ttcttacttt aactggagga tttttattcg gagtattctg gggcgtgtta
     1201 tttgtagtca tcagcgctac gcttggggcc accatactgt tttttgccgt tcgcactgct
     1261 ttgggcgact ggtttgccca aaaggcatct ggatggatag agcgtatgcg tcagggattt
     1321 cagcataatg ctttttctta tttagttaca ctgcgattaa ttccattatt tcccttttgg
     1381 gcagttaata ttgtaccggc tcttttaaac attcgagcaa aaacattcat tacagcgact
     1441 tttattggca tcattccagg aacaacagta tatgtaatgg ttggaaatgg tttaagccaa
     1501 atatttgcag ccaatcagac gcctaatctt gggatcatat ttgaactgca aatattaggt
     1561 ccactgctcg cgttggctgt tctctctcta atgccagttc tttatcaatt ctcaactcgc
     1621 aagcatcaga atcatcacag tttctcagat attagtcgag taataaattg tgatttagcc
     1681 attataggtg gtggtgccgg aggtttgagt ttagcttccg gttgttcaca gttaggactc
     1741 aaagttgttt tggtggaatc agggaaaatg ggaggagact gtttaaatta cggttgtatc
     1801 ccatccaaat ccttacttgc tgcagccaag acgttttatt atgcaaaaca tgcaacacat
     1861 tttggagtac atactgaagc aataaaaatt aattttcaac aagtaatgca acatgtgcat
     1921 caaatcatag acaacatttc tgaacacgat tctgtccaac gttttgagtc gctaggagtg
     1981 caggtcatta aacaagttgg gaaattttta aaccctgata ccttacaagc tggcgatagc
     2041 attattaaag cgaaacgctt cgtggttgca acaggttcat caccatttat cccacccatt
     2101 cccggattgg atgcagtctc ctacttcacc aatgaaacga tttttgattt aaaggaacaa
     2161 cctgagcact tgattgtcat cggtggtggc cctattggtt gtgaacttgc tcaagcgttc
     2221 gccatgctcg gttctaaagt tactctgctc gaaggattga atcttcttcc caaggacgat
     2281 cctgattgtg ttgctgtcct acgcacacag atgaaatcga tgagtattgt cattcatgaa
     2341 caaatcgaga ttacgcaaat aaactctcat cctgatacgg gtatctccgt atgttttgaa
     2401 tttcaaaaca cacaattcac aattacagcc agtcatctgc tcattgcaac tgggcgtcgg
     2461 gcgaatgtaa agcctcttga tttggaaaaa gcaggggtta aactcaccag caaaggtgtc
     2521 gaagtaaata aatacctaca aaccagtaat aaaaaaatct atgctctggg tgatgtaaca
     2581 gggctttacc agtttactca tatggcgagt tatcaggcca gtatagtgct tcgtaatatt
     2641 gtttttaaac taccgtctaa agtggattat agagcgattc catgggtcac ttatactgat
     2701 cccgaattag ctcatgttgg aataggagtc agtgatgcct tgaagcaccc tgatgcccaa
     2761 ataatcgaat ggccatttgt cgataatgat cgagcacaaa ctgaacgctc gttaaatgga
     2821 aaaataaaaa tcatcacgga caagaaagca aggatccttg gagtcaccat agttggccca
     2881 catgccggag aactcatttt accttgggtt atggcgattc gtgagaaaaa aaacctccga
     2941 agttttactg atgtaatcgt tccttaccct actctgagtg aaatcagcaa acgagttgct
     3001 ggtagttttt atgcacctaa attattttcc aataaaacac gaatgttagt tcgctggttg
     3061 caaaaaattg ggtaaataga tttttaacta actatatgtt ttttggctga aagaaaaaat
     3121 tacaagctat ttaattcaat cttaaacgat gtttgacttc tttttcatca gataaaattt
     3181 caataacatg ggcaacccat tttttattgt ctactctagc aagcacattg gtacggccat
     3241 ataatttttt atttggtttg caatggatta gtgaagccaa catgttgttg caaataaccg
     3301 agaaatagcg acggtcttta ctgaaaactt tcagatgata ttgagttaat aattttccaa
     3361 aagggatatt ggtgtgagtt atatcagtaa taagtttctc cggcagttct tcaaaattaa
     3421 tgttaatagc tgctaattca actggaatga tttcattttt cttttgggcg agctctacat
     3481 tatttctttt cttatttcgg tctacataca ggatgataat tcgagaatag gtattattat
     3541 gcggatttgt aaaggcagta attactttaa tcctggaggt gcgctgatag tacttttcca
     3601 aagtggtcgt cattaatggc tgtgtaagta agtaattgta aggagagatt agactgtctt
     3661 tgcttaatac agtgctcatt ttaacaatat tgaacagact atctacctga tttgtgtgga
     3721 ttgatttagt cgcatgtgat aaatcccccc aaacacctaa aaaaagaaat aaaatagtat
     3781 tgatggtact tgctcgcatg gtgagtttta aattcaccca gttgattaat aaatgaatca
     3841 tttctagcat gaccttatat aattaactac aaaattccta tctaacaaaa gcatccattg
     3901 ggattatagg atgaaagcag cagatccatg ccgtatttta agtcagataa tgatgtaaaa
     3961 atagtccaat accataagat agagaggctg ttacagtgcc aattattagt gtctcaaaac
     4021 cggaatataa ccaggatttg gttgaccagt ggcttttgat tgagccgatg acaaaaaatg
     4081 taattgcagt gaaaaaacaa gaccagatga acgaattgtt catgaccagc acgtaaggaa
     4141 ttaatggaat aattccaaaa agtagaaacg cactaaaagt ataaagcgca gatttaagcg
     4201 ggaatcgaag tgtagcaggc aacccatatt cttcttgtaa catggttttt atccataatg
     4261 ctctgttcgc tgtaatttcc tcaacaactt gatccaatgt ttggccatgc aaacctttat
     4321 tttgaaaaat ttgttttatt tcgttttttt caccctctgg aataaaatca atatgttttt
     4381 cttcaattgt tttataacgc tgaaattgat cgacctcaga tttggtaccc agataattac
     4441 ttgccgccat tgaaaaccca tcagcaagca agttggcaaa acctaaaatt agaataacta
     4501 aagaagatag ttgtccacct acaacaccag aaacaatggc aaaagtagtg acaacaccat
     4561 caattcctcc atatatccaa tctcgcaagt aattttgaga tgggacctgt gctaatcgat
     4621 ctctgatttc tttttgcgaa tgtccatgct ctaaatt
//
LOCUS       DACVWI010000211         4617 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.212, whole genome shotgun sequence.
ACCESSION   DACVWI010000211 DACVWI010000000
VERSION     DACVWI010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4617
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.212"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            306..1982
                     /gene="kaiC"
                     /locus_tag="JBH85_13040"
     CDS             306..1982
                     /gene="kaiC"
                     /locus_tag="JBH85_13040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circadian clock protein KaiC"
                     /protein_id="HAU0947128.1"
                     /translation="MHLLRGRNVNTNKAKTGIKGLDDILNGGYLKNKPTLLKGSPGTG
                     KTIFTLFFTHEQLKSNNSVIYVTCDESPEQIIAHMDGFNLESSKFLQEGKLLILDFTP
                     ILTDEVAGEFNINALLLRIEQAQQKIKADTLIIDSLQSILLGIKNYDPNYELLRLFQW
                     ARQKNLTVLTTMAETQTILQTEIYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSH
                     GTNEYPFSITHNGISLLPITSTKLNTTTSAAYLSTGIKALDSMLGSKGYQTGSQIIIS
                     GRSGTAKTLFATSFAQSAVRQGRKVLFISFEESPNDLIRHVKSINIDLMKYITKKKLH
                     INSRRSVEMGLEDHIISIIELTEEKQFDVLILDPISALLDLGNTMEVKRLFIRFISYM
                     KSLNKTLLFTELIPDYSKELTILGLSSLTETWIRLSNVESNGEFNRLIHIAKARGIKT
                     SNQIKEFYVTDKGINIEAPYLGDNQMMFGSQKSAHILREKQELQQRKEEIKRIELEID
                     KLAETQRAQLKIQEATFLAKRTELIAKKNELIAKEEALIKRMESNKLLRE"
     gene            1987..2259
                     /locus_tag="JBH85_13045"
     CDS             1987..2259
                     /locus_tag="JBH85_13045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circadian clock protein KaiB"
                     /protein_id="HAU0947129.1"
                     /translation="MTRTKLKLFVIGNSAISKRAIINLQSICSDPKLADLCDIEVVDL
                     CKNKGIAEQEKILATPILIKKEPLPERRIIGDLSDKQKVISALEMD"
     gene            2268..>4617
                     /locus_tag="JBH85_13050"
     CDS             2268..>4617
                     /locus_tag="JBH85_13050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0947130.1"
                     /translation="MISNEHINTQNFWYQLVEKMAIGVLVINNEGQILYANDYAVQLF
                     GAIRTELIGTNFLYPMAADETQEVEILKSSNEILTAHMTVRKSIWENRQVWIISLFDI
                     TELKLKEKLLKISSKGISSAFEGIIITDSEGTILEANQAFMKMTGYTEQEVIGQKPAI
                     FQSRKQNEKFYKELWKILAEKGQWSGELWAKKKNKKLFPAFLAISSVKNSEGDVINYI
                     GYYHDLTLIKKQEQQIENFKYYDYLTGLPNKFLLTQRLQMLISGLSEENKELIVFNIR
                     VFDSNSKNSLLDFPPNIRDKIILEVVNRIDRTSPKKMFYSRIGLGEFIVIYFIKSRIE
                     VMASIAQRMIEKLACPYYIDHQTIILQTIIGLTAYYKNSAFSAEDLLQQSEIARHKAQ
                     INGVNIFEFFDPQVEERIIEFNKRIESVSKAMQLNELKVYYQPIVELNTAKVVGLEAL
                     LRWQHPEKGLLLPKQFLSDLNNHPLSLQIGDWVLHQVLHQVEELLACNIKIPINVNVS
                     AYQLQHPNFVKKLFDTLARYPNVPHRLLVLEILETEAIEDLTLVSQIIAECKAKGINF
                     SLDDFGTGYASLTFLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLI
                     AEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKLIIWIKNWHLGPEWRETRFSQAEL
                     SNLVKISIKHYLHYQSIRLYLENNQSPKPELSLEVCPIEQWLIENQQTIKESKRFKKV
                     CDLHHKEHEVGNTIIQLIRTGQKEQVDKQLAKLDGLRDKFLKE"
BASE COUNT         1644 a          837 c          813 g         1323 t
ORIGIN      
        1 ttacaattag ccttttagct taaatgaaat aaccaaacca catgccaatt gggatggttg
       61 attcgctggt ttactttcca ttccacaaaa tagtagatcg atgaattaaa agcaaaaact
      121 tgttttcttt atttaaacga ttcaacccca aacctattct agaatgattc ggttagttct
      181 aaatacaact aaatgcaaaa tttattacga caaaatttgt tacgactcta tcaagacgaa
      241 atattagaac tataattaaa caatcagaat attatttatc gcttcaacag tggtatttta
      301 cagatatgca tctgttgaga ggacgaaatg tgaataccaa taaagcaaaa acgggaatta
      361 aggggttaga tgatatttta aatggtggtt atttaaaaaa taaaccaacc cttctcaaag
      421 gcagccctgg tacaggaaaa acaatattta cccttttttt tacgcatgaa caacttaagt
      481 caaacaacag cgtcatttat gtcacctgcg atgagtcacc tgagcaaatt attgctcata
      541 tggatggctt taacctggaa agcagcaaat ttttacaaga aggcaagctt ttaattcttg
      601 acttcacacc tatattaacg gacgaagtgg ccggggaatt caatatcaat gcacttttac
      661 tccgtataga acaggctcaa cagaaaatca aagccgatac actaattatt gattcacttc
      721 agtccattct tttaggcatc aaaaattatg atcccaacta cgagttgtta agattatttc
      781 agtgggcgcg gcaaaaaaat cttaccgttc tcacaacgat ggctgaaacc caaacgattt
      841 tacaaacaga aatctatgac gaatatgttg ttgattgtgc tattgagcta aaacaaaaag
      901 tcaagaacga cctgatgacg cgctatttgc gaatcattaa aaatcgtggt tcgtctcatg
      961 gcactaatga gtatcccttt tctattactc ataatggcat ttcattactt cccatcacta
     1021 gcacaaaact gaatacaaca acttctgctg catatctcag cactggtata aaagccttgg
     1081 atagtatgct aggcagtaaa ggataccaaa caggatcgca gataataatc agcggacgtt
     1141 caggaacagc aaaaacgctt tttgcaacaa gtttcgccca atccgctgtt cgacaaggca
     1201 ggaaagtgct gttcatctca tttgaagaat cccctaatga tttaatccgt catgtcaagt
     1261 ccattaatat tgatttaatg aaatatatca ccaaaaaaaa attacatatt aattcaagac
     1321 gctctgtgga aatgggactg gaagaccata ttatttcaat catcgaatta acagaagaaa
     1381 agcaatttga tgtcctgata ctggatccca tctcagctct gctggattta ggtaatacga
     1441 tggaagtcaa gagactgttc atacgtttta tttcttatat gaaatctctc aataaaaccc
     1501 ttttatttac tgaactgata cccgattatt ccaaagagct aaccatactg ggcttatcca
     1561 gcttaacaga aacctggatt cgcttatcta atgtggaaag taatggagaa ttcaatcgat
     1621 taatccacat tgccaaggcg cgtggcataa aaacatccaa ccaaatcaaa gaattttatg
     1681 tcactgataa agggattaac atagaagccc cttatcttgg tgataaccag atgatgtttg
     1741 gttctcaaaa atcagcccac atcttgagag aaaaacaaga attacaacag aggaaagaag
     1801 aaattaaacg gattgagctt gaaattgata agcttgcaga aacacaacgt gctcaactca
     1861 agattcaaga ggcaaccttt ttagctaaaa ggactgaatt gattgctaaa aaaaatgaat
     1921 tgattgctaa agaagaagcg cttattaaac gcatggagtc caacaaattg ttaagagagt
     1981 aaatgaatga ctcgaactaa gctaaaactg tttgtgattg gaaatagtgc tatatcaaaa
     2041 cgtgccatta ttaatttgca atcgatatgc tcagatccca agcttgctga tttgtgcgat
     2101 atcgaggtag tcgatctatg taaaaacaag gggatagcag aacaagaaaa aattctggca
     2161 actccgatat taattaaaaa agaacccttg cctgaacgtc gaatcatcgg tgatttatct
     2221 gataagcaaa aagttatttc tgctttggaa atggattagg tgatatcgtg atatcaaacg
     2281 agcatataaa cacacaaaac ttttggtacc aactcgttga aaaaatggct attggggtat
     2341 tggtgattaa taatgaaggg caaattcttt atgccaatga ttatgccgtt caattatttg
     2401 gcgccatccg tacagaactc attggtacta atttcttata tcctatggct gcagatgaaa
     2461 cacaggaagt tgaaatttta aaatccagta atgaaatttt aacagcacat atgacagtca
     2521 ggaaaagtat ctgggaaaat cgccaggtat ggattatttc tctctttgat attacagagc
     2581 tcaaattaaa ggaaaaactt ttaaaaattt caagtaaggg tatcagttca gcgtttgaag
     2641 gcattattat caccgattcg gaaggcacca ttcttgaagc gaatcaagct tttatgaaaa
     2701 tgaccggata tacagaacag gaagtcatag gccaaaaacc cgccattttt caatcaagaa
     2761 agcaaaatga gaaattctac aaggaactat ggaagatatt ggctgaaaaa ggacagtgga
     2821 gtggtgagct ttgggctaaa aagaaaaata aaaagttatt tccggctttt ttagccatct
     2881 catccgttaa aaattctgaa ggggacgtaa taaactacat tggttattat catgatctaa
     2941 cactaataaa aaaacaagaa caacaaattg agaattttaa atattatgat tatttaaccg
     3001 gtttaccaaa taaattttta ctcacccaaa gacttcagat gctcatcagc ggattgtctg
     3061 aggaaaataa agaactcatc gtttttaata ttcgagtatt tgactcaaac agcaaaaact
     3121 ctctgctgga ttttcctccc aatattcgcg ataaaatcat attggaagtg gttaaccgta
     3181 ttgatcgaac atcacctaaa aaaatgtttt actcacgcat tggtttaggt gaatttattg
     3241 ttatttattt tatcaaaagc agaattgaag tgatggcttc cattgcgcaa agaatgatag
     3301 aaaaactcgc ttgtccttat tacattgatc accaaactat tattttgcaa acgatcattg
     3361 gattaaccgc ctattacaaa aatagcgcat tcagtgccga ggacttgcta caacaatcag
     3421 aaattgcccg ccataaagct caaatcaacg gtgttaatat ttttgaattt tttgatccgc
     3481 aggttgaaga gcgaattata gaatttaata aacgcattga atcagtctct aaagcaatgc
     3541 agctaaatga actgaaagtt tattaccaac ctattgtaga attaaatacg gctaaagtgg
     3601 tgggtttgga agcgctactt cgttggcagc atccagagaa aggtttattg cttcccaaac
     3661 aatttttatc cgacctcaat aatcatcctc tttctctaca gattggtgat tgggtgcttc
     3721 atcaggtatt acatcaagtt gaagaattgc tcgcttgcaa tataaaaatc cccatcaatg
     3781 ttaatgttag tgcttatcaa ctgcaacatc ccaactttgt caaaaaactg tttgacacat
     3841 tagcacgata ccctaatgtt cctcatcgcc tgcttgtgct tgaaatcctt gaaacagaag
     3901 ctattgaaga tttaacccta gtatcccaga taatagccga gtgcaaggct aaaggaatca
     3961 acttttcctt ggatgacttt ggaacaggtt atgcttcttt aactttccta aaagaattga
     4021 gtacctcgga agtgaaaatc gatcgaagtt ttatcattaa catctttgat aaccctaaag
     4081 atctcgctat tttgaaaata attatagagt cttgcaaagt gattggccgc accctgattg
     4141 ctgaaggagt tgaaacagta gcacatggga aactattaga attacttggt tgccatctaa
     4201 tccagggata cgccattgcc aaacctatcc ctcctgcaaa attaattata tggataaaaa
     4261 actggcatct tggcccagaa tggagagaaa ccagattttc acaagcagaa ctatctaatc
     4321 tggtaaaaat ctccataaaa cactatctac attaccaatc aatcagactt tatttagaga
     4381 ataatcaatc ccctaaacct gaattatcac ttgaagtatg tccaatagaa cagtggctta
     4441 ttgaaaatca acaaacaatc aaagaaagca aacgatttaa aaaagtgtgt gatttgcatc
     4501 acaaagaaca tgaggtggga aatacaataa ttcagctaat tcggacaggg caaaaagaac
     4561 aagtggacaa acaactggca aagcttgatg gcttaagaga taagttcttg aaagagt
//
LOCUS       DACVWI010000212         4577 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.213, whole genome shotgun sequence.
ACCESSION   DACVWI010000212 DACVWI010000000
VERSION     DACVWI010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4577
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.213"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..742
                     /locus_tag="JBH85_13055"
     CDS             <1..742
                     /locus_tag="JBH85_13055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947131.1"
                     /translation="SKIKYLPIAVVSSALNLISLLFYLVGYSLWFIASHFYPSQDKKM
                     QEWYEFAQFKEQYLYAAALGLVATSISMMAIFSPIMLVLSGWLFFGSNIVWTIGEYNK
                     LNNPPSHEENFSKDRQNAYVSYALSISLIGFITAVSTTVAFFIPVMTIPLLIVTTIVC
                     IGVGALAFEYWIESKFGDPQPDITIDESYKQMSHDLGKKITLEPNPTPEPYHGTRPLH
                     FTPHDVKMREPSPDLQKDLSSRTCKPQY"
     gene            781..1176
                     /gene="cdd"
                     /locus_tag="JBH85_13060"
     CDS             781..1176
                     /gene="cdd"
                     /locus_tag="JBH85_13060"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HAU0947132.1"
                     /translation="MDKLTSNMISEAHKVLVNAYAPYSKFSVAACICTDKNNFYTGVN
                     VENISYGLTTCAEVSAICNMVTAGERKIKSIVVLAANNLLCSPCGACRQRIHEFSSSD
                     TMVHLCNKETIFHSITINELLPLAFDFNP"
     gene            1189..2028
                     /locus_tag="JBH85_13065"
     CDS             1189..2028
                     /locus_tag="JBH85_13065"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HAU0947133.1"
                     /translation="MTTSISTISYPHLAAEYIQKTCPSFKPKVGVVLGSGLGQFAEEL
                     EDTVAIEYEKLPGFPRTTVQGHGGKLILGYYGSTAVICLQGRAHTYESMENHETVKTY
                     VRTLKLLGCQYFIATNASGSLKEEVGPGELMLITDHINFQPGNPLVGPNDDEFGPRFY
                     PLDNAYDITMRNALLDIAQRHSIKLHQGVYISVLGPNYETAAEIRAFKLLGADAVGMS
                     TVPEVLVANHCGLRVAVIATITNYATGLAKTSHSHESVVKMASSAAEKLNTLIKQYIL
                     ELS"
     gene            2025..2789
                     /gene="deoC"
                     /locus_tag="JBH85_13070"
     CDS             2025..2789
                     /gene="deoC"
                     /locus_tag="JBH85_13070"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HAU0947134.1"
                     /translation="MSLDKHFNDVLDKLLSNQDIISISNAQLMHCIDLTLLEADASLE
                     ALHQLQSRACQNDVAAICVLPKHLHVFKPNSKIKLATVINFPLGNDDLLVSLAEIDNA
                     IQLGVNEIDYVLPYQYYLRGNKQKALNHCDVIIQTCKKYQLTLKIILETGLFPDMESI
                     YQLSSEVIALGGRFLKTSTGKTPQGATLAAVFAIVSAVMDSTYASSCGIKVSGGIKTP
                     LQAQQYAQLAELLMGKAIHKDWFRIGASTLLEKLLS"
     gene            2819..>4577
                     /locus_tag="JBH85_13075"
     CDS             2819..>4577
                     /locus_tag="JBH85_13075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAU0947135.1"
                     /translation="MQTGRGLAMKLWIMLFNCFIVTFLITFSHAKAPVNNNKSSYCLP
                     NQPCWPTPKEWEQLNKKINGHLIKARNYLSPCIEDPKSNGCKNTLEEIKNPFYLETQP
                     TATQSTGWFEAWDSEISPYIVAAKTAQEIAHAVKFARKHHIKLVVKGTGHDYLGRSNA
                     PDSLLIWTHHMREIQFQKHFVPNGCSANHKGVPAVTVEAGTRWIEAYKEVTVNQGRYV
                     QGGGCTSVGVAGGFIQGGGFGSFSKKYGTGAGGILEAEVIIADGSILIANECQNQDLY
                     WALKGGGGGTYGIVSKVTLETHELPATFGALTGSITAKTEQDFKNLIDYFIIFYRERL
                     HNEHWGEQVILGPDNKIELALVFQGMSKTQVDRLWQPFKTWLSQKPEHYQFTINSLVL
                     PARKFWDYDYLSKNLPDHIVIDKRKNIPYPEFWWSGNQSEVSIYLTHYQSGYLPYTLF
                     QEKFSNKLSNALFEASRLTKLSLHFNKGLAGASQQAIERQRKTSMNPSVLDAAALITI
                     IGGQQYVFPKLPEHKPDLDKARFSAKQAKKAMKLISALNPDSGTYGNEADYNLKNWQR
                     ALWGSNYEKLLQIKHHYDPE"
BASE COUNT         1458 a          866 c          895 g         1358 t
ORIGIN      
        1 ttcaaaaatt aaataccttc ccattgccgt tgtttcttct gccctgaatc tgatttcact
       61 tttgttttac ctggttggct atagtttgtg gtttattgca agtcattttt atccaagcca
      121 agataaaaag atgcaagagt ggtatgaatt tgctcaattt aaagaacaat atctttacgc
      181 cgcagctcta gggctcgtcg caacatctat cagtatgatg gcaatctttt ccccaataat
      241 gcttgttctt tcaggatggc tgttttttgg cagtaatatt gtttggacaa ttggtgagta
      301 caacaaatta aataatccac ccagccatga agaaaatttt tccaaagacc gtcaaaatgc
      361 ctatgtgtct tatgctttat ccataagttt aataggattt attacagcag tctcaactac
      421 tgtcgctttc tttattccag taatgactat acccttactt atagttacaa ctattgtatg
      481 tattggggta ggagcgttag cgtttgaata ttggatcgaa tcgaaatttg gcgaccctca
      541 gcctgatatc actatcgatg aaagctacaa acaaatgagc catgatttgg ggaaaaaaat
      601 tactttggag cccaatccta ccccagaacc ttatcatgga accaggccac ttcactttac
      661 gccacatgat gtaaaaatga gagaaccgtc tccagatctt caaaaggatt tatcctctcg
      721 tacttgtaaa ccacagtatt aatttagtat attctgcacg ccaatgatga gggtgtgaca
      781 atggataaat taacttcgaa catgattagc gaagcgcata aggtactagt caacgcttat
      841 gccccctatt ccaaattttc agtagctgcc tgtatatgca ctgataaaaa taatttttat
      901 acaggggtga atgtagaaaa tatttcctat ggactaacaa cctgcgctga agtttcagcg
      961 atttgtaata tggttaccgc aggtgagcga aaaattaaaa gcattgtggt attagctgca
     1021 aacaatttgc tatgctctcc ttgtggcgca tgccgacaaa gaattcatga gttttcatcc
     1081 tctgatacca tggtacatct ctgtaataaa gaaacaatat ttcatagtat tacaattaat
     1141 gaattactac ccttggcttt tgattttaac ccttaatcgg acgattttat gacgacttca
     1201 atatctacta tcagttaccc acatttagca gcagaatata ttcaaaaaac atgtccatca
     1261 tttaaaccaa aagtgggtgt agtattaggc tcagggttag gtcaatttgc cgaagagtta
     1321 gaagatacag ttgctattga atacgaaaaa ctcccaggat ttcccagaac tacagtacag
     1381 gggcatggag gaaaattaat tttaggatat tatggatcta ctgcggttat ttgcttacaa
     1441 ggcagagccc atacttacga aagcatggaa aatcatgaaa cagtaaaaac ctatgtaaga
     1501 actttaaagc tattaggttg ccagtatttt atagcaacaa atgcttctgg ttcacttaaa
     1561 gaagaagttg gaccgggtga attaatgcta attaccgatc acatcaattt tcaacccgga
     1621 aatcccctgg ttggtccaaa tgatgatgag tttggaccca ggttttatcc tttagataat
     1681 gcttatgaca ttaccatgcg taatgcatta ttggatattg ctcaaagaca ctcgattaaa
     1741 ctacaccagg gggtttatat ctctgtcttg ggaccaaact atgaaacagc tgctgaaatt
     1801 cgtgccttta aattgctggg agctgatgca gtggggatgt caactgtgcc tgaagtttta
     1861 gtcgccaatc attgtggctt gcgtgtcgct gtcattgcaa ccataacaaa ttatgcaact
     1921 ggccttgcaa aaaccagtca tagccatgaa tccgttgtca aaatggcttc cagtgccgct
     1981 gaaaaactta atactttgat taaacagtat attttggaat tatcgtgagt ttggataagc
     2041 attttaatga tgtcttggac aagctcctgt caaaccagga tattatatct atttcgaatg
     2101 ctcaattgat gcattgcatt gatttgactc tgctagaggc ggatgcttct cttgaagcat
     2161 tgcatcaatt acagagccga gcctgtcaaa atgatgttgc agctatttgc gtactaccca
     2221 aacatcttca tgtttttaag cctaactcca aaattaaatt agcaactgtt atcaattttc
     2281 ctcttgggaa tgatgatttg ctggtttcct tggcagagat agataatgcc attcaactgg
     2341 gtgttaatga aatagattat gtactaccct atcagtatta cttaagagga aataagcaaa
     2401 aagcgctaaa tcattgtgat gtcattattc aaacctgcaa aaaatatcaa cttaccttaa
     2461 aaataatttt agaaactggc ctttttccag atatggaaag catttatcag cttagctcag
     2521 aagtcattgc tcttggtggg cggtttctca aaacttcgac tggaaaaacc cctcagggtg
     2581 cgactctggc agcagtattt gctatagtca gtgctgttat ggattcaact tatgcatcct
     2641 cttgtggaat taaggtttca ggagggatta aaacacctct ccaggctcaa caatatgctc
     2701 aactggctga attacttatg ggcaaagcaa ttcataagga ttggtttcgt attggagcca
     2761 gtactctgct tgagaaatta ttgtcatgaa cgcacaatct atgtgttaat atgtcagcct
     2821 gcaaacaggg agaggtcttg caatgaaatt atggataatg ctatttaact gctttattgt
     2881 taccttttta ataacattct cccacgcaaa agcgccagta aataacaata aatcatctta
     2941 ttgcctccct aaccaaccat gctggccaac ccccaaagaa tgggagcaac taaacaaaaa
     3001 aataaatggc catttaataa aagccaggaa ctatctgtca ccttgcattg aagatcccaa
     3061 aagtaatggt tgtaaaaata ccctggagga aataaaaaat cccttttatt tggaaacaca
     3121 acctaccgca acccagtcca ccggctggtt tgaggcatgg gattcagaaa taagcccata
     3181 catagttgca gcaaaaacag cgcaggaaat tgctcatgca gtaaaatttg ctagaaaaca
     3241 tcatatcaaa ctagttgtca aaggcactgg tcatgactat cttggaagat ccaatgctcc
     3301 tgattctttg ctgatttgga cacatcacat gcgagaaata cagttccaga aacatttcgt
     3361 cccaaatggt tgttctgcaa atcataaggg tgttcctgcg gtaactgttg aagcaggtac
     3421 cagatggata gaggcttata aagaggttac tgtaaaccag gggcgctatg ttcagggcgg
     3481 aggctgtact tccgttggag ttgctggggg atttattcaa ggtggaggat ttgggagttt
     3541 ttctaaaaaa tatggaaccg gtgcaggggg aattttagaa gcagaagtaa ttatcgctga
     3601 tggttcaatt ttgattgcca atgaatgcca aaaccaggat ttatattggg cattgaaagg
     3661 aggtggcggc ggaacttatg gtattgtaag taaagtcaca ttggaaacgc atgaattgcc
     3721 agcaacattt ggagcattaa caggaagtat tacagcaaaa acagagcagg attttaagaa
     3781 tctcatagat tattttatta ttttttacag agaaagactt cataatgaac attggggaga
     3841 acaagtcata ttaggccctg ataacaaaat agagctggca ttggtttttc aagggatgag
     3901 caaaactcag gttgatagat tatggcaacc atttaaaact tggttatccc aaaaacctga
     3961 acattatcaa tttacaataa acagcctggt actacctgca agaaaattct gggattacga
     4021 ttatctaagc aaaaatctac ctgatcatat tgtaattgat aagcgaaaaa atatccctta
     4081 tccagagttt tggtggtctg gtaatcagtc agaagtttct atctatttaa ctcactacca
     4141 atccggttat ttgccctata ccctctttca agaaaaattt tcgaataaac tatctaacgc
     4201 tttgtttgaa gcatctcgcc tgaccaaact gtctttgcat tttaacaaag gcttggcagg
     4261 ggcgtctcag caagcaatcg agagacaaag aaaaacatca atgaaccctt ccgtattgga
     4321 tgcagcagcc ttgataacaa taattggggg gcaacaatat gtctttccca agttgcctga
     4381 gcacaaacct gatttagata aagcacggtt ttcagctaaa caggcaaaaa aagcaatgaa
     4441 gctaatatct gctctgaatc ctgattcggg cacctatgga aatgaggccg attacaattt
     4501 aaaaaattgg caaagggctt tatggggatc caattatgag aaattattac aaattaaaca
     4561 ccattatgat cccgaaa
//
LOCUS       DACVWI010000213         4546 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.214, whole genome shotgun sequence.
ACCESSION   DACVWI010000213 DACVWI010000000
VERSION     DACVWI010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4546
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.214"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(62..597)
                     /locus_tag="JBH85_13080"
                     /pseudo
     CDS             complement(62..597)
                     /locus_tag="JBH85_13080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015195628.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            complement(831..1490)
                     /locus_tag="JBH85_13085"
     CDS             complement(831..1490)
                     /locus_tag="JBH85_13085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HAU0947136.1"
                     /translation="MEHSNAYGLWLLVMVNSAIFILFALSFTQLKSKRDWKSLGAFSA
                     FVIAYFTEMYGFPLTIYLLSGWLSNHYPGINLYGHDSGHLLHTLLGLKGDPHFDLFHI
                     LSNVFIFGGLYLIYSGWSTLYAAQKTNQLATTGLYAYVRHPQYDGFILVMIGFLLQWP
                     TLITLFMFPILVYVYVRLAHREEQETQALFGEAYQRYAAKTPAFIPHLFHKRQRKGDL
                     P"
     gene            complement(1493..1774)
                     /locus_tag="JBH85_13090"
     CDS             complement(1493..1774)
                     /locus_tag="JBH85_13090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2933 domain-containing protein"
                     /protein_id="HAU0947137.1"
                     /translation="MNTEHDQHQQTKKSGFPSARGFILILIFVIIGYYLFTEHKAHVI
                     GFLAASPWWILLFLLCPLMHLFHGGHGGHSNHKTQHDKKDNNLDSNEKD"
     gene            complement(1774..3522)
                     /locus_tag="JBH85_13095"
     CDS             complement(1774..3522)
                     /locus_tag="JBH85_13095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3141 domain-containing protein"
                     /protein_id="HAU0947138.1"
                     /translation="MDEHNLKRGEEAISKEQKPSLTEVFSQSYQLWNDLFHYHIDYWQ
                     RSVLFFDTLRQRANDMMEHEQQGMPPPLRFRYELVLDGRTLEPKTNYALLKILEIDDV
                     CFEQCFDPNKPPVIIVDPRAGHGPGIGGMKRDSEIGIALHRGHAVYFVMFYPQPIPHQ
                     TLADVLSTMKQFVAQVKTWHQDQPPILYGNCQAGWMLALLASDCAGLVGPLVMNGSPI
                     SYWSSGEEEVNPMQLLGGLLGGVWLTRFITDLNDGILDGAWLVQNFELLNPTTAIWDK
                     YHHLFDAVDTERERFLDFEHWWNGFYHFSTEEITATVENLFIGNKLERGEIAINHDCV
                     YDLKRIHNPIVIFASQGDEITPPYQALHWLRRIYPTTNDLKKAKQRIIYLLHPTIGHL
                     GIFVSAKVVRFEHRAILEHCTAFEKLPPGLYEMIITNPTGNPDCSKEQYEVYFKERDL
                     AELCSSNPIEPFERVRKLSEANDTYYRALCQPWIQAISNPLLTLWLDKTHPMRLSRYV
                     FSEKINPTMRLILLVAKAVEANRQRLEGTNLFKNNEQLFCEMIRSSLEAVRNERNNLM
                     KHLFESLFGGDNKDKG"
BASE COUNT         1404 a          911 c          915 g         1316 t
ORIGIN      
        1 aataatcctt attattcaga atagcatagg atgtggaagc tgtagtgaat cgttcttgtt
       61 gtaaacggta aattgttgct ttatggacat taaaggtttt tgcaatttca ctgactgatt
      121 tatcttcttg taaaagccgc ttggctaatt gtttttgttc ttcattcatt ttttcgggtc
      181 gtccaaaacg aactccacgt tgctttgcag ctgcgcgtcc agcaccagta cgttcgcgaa
      241 ttaagtcacg ctcaaattct gcaataccag caaatacagt catgatcatt ttaccggcat
      301 gagaagtggt atctgcccat ggctcggaaa gcgaacaaaa ggaagcctct gttgttctta
      361 tgtagtctat taattctagt aaatgctggg ttgaacgcgc caatctgtcc aatttcaaaa
      421 caacgactac atcatcaggt cgaagctgat caagtaatcg ttgtaattct ggacgatctc
      481 tttttgcccc agaaattttt tcctgataga tacgtttaca atctgcttct ttagagctgt
      541 taattgcaac tctaaatttt gatctgtggt tgaaacgcga gcatatccaa ttttcataac
      601 caatccctaa tattttattt gcaaatcata tcgcaaaaca atagactttt gcatctgatt
      661 tttgcaacga atttaagctg ttaaataaaa gtattcaaat tacgttgcta aacttagtac
      721 ttttgccaat tgtacgccag ctccttgatt gcgtagcccc cagataatga gacttacacc
      781 taatgaaaaa gcaattaagc ccagcgtcat agctgtgtga aatagaaaca tcagggcaga
      841 tctccttttc tttggcgttt gtgaaaaaga tgggggataa atgcgggtgt ttttgccgca
      901 taacgttgat aggcttcccc aaacaacgct tgcgtttctt gttcttctcg gtgagcaaga
      961 cgtacgtaga cgtaaacaag gatgggaaac atgaataagg taataagcgt tggccattgc
     1021 aataaaaatc caatcatcac tagaatgaac ccatcgtatt gcggatgccg aacgtaggca
     1081 taaagtcctg tggtggcgag ttgattggtt ttttgcgccg cataaagggt actccacccc
     1141 gagtaaatga ggtaaagacc gccaaagatg aatacgttac tcaagatatg gaataagtca
     1201 aaatgcggat cacctttcag ccctaatagc gtatgcagta gatgaccaga atcgtggcca
     1261 tagaggttaa tgccagggta atggttagaa agccatccgg ataataagta gatggttaaa
     1321 ggaaatccat acatttccgt aaaataagcg atgacaaagg cagaaaaggc gccaaggctc
     1381 ttccaatcgc gtttggattt gagttgagta aaactgagag caaagagaat aaaaatggct
     1441 gagttaacca tcactaaaag ccaaagacca taagcattag aatgttccat catcaatcct
     1501 tttcattcga atccaggttg ttatcttttt tgtcatgttg cgttttgtgg ttgctatgtc
     1561 ccccatgccc accatgaaaa agatgcatta aagggcataa taaaaacaac agtatccacc
     1621 agggagaagc cgccaaaaaa ccgatcacat gggctttgtg ttctgtgaaa aggtaataac
     1681 cgataatcac gaaaatgaga attaggataa atccacgcgc agaaggaaac ccggattttt
     1741 tggtctgttg gtgttggtca tgttctgtgt tcatcatcct ttatccttat tatctccacc
     1801 aaaaagggat tcaaataagt gtttcatgag gttatttcgc tcattcctca ctgcctccaa
     1861 tgacgagcga atcatctcac aaaacagctg ttcattgttt ttaaataaat tagtaccttc
     1921 tagcctctga cgattcgctt cgactgcttt tgctaccaat aaaatgagcc gcatggttgg
     1981 atttattttt tcagaaaaga catagcgact caggcgcata gggtgcgttt tatctagcca
     2041 taatgtcaag agaggattgc tgattgcctg aatccaaggt tgacaaagag cgcgataata
     2101 agtgtcgttt gcctcagaca gtttgcgcac cctctcgaag ggttcgatgg ggttgctgga
     2161 acacagttct gcgagatcac gttctttaaa gtaaacctca tattgttcct tgctgcaatc
     2221 tggattgcct gttgggttgg tgattatcat ttcatataaa ccgggtggta acttctcaaa
     2281 ggccgtgcaa tgttccaaaa tggcacggtg ttcaaagcga accactttgg ctgaaacgaa
     2341 aatgcctaaa tgaccgatgg taggatgcaa aaggtaaata atgcgttgct tggctttttt
     2401 taaatcattt gtcgtaggat agattcttct taaccaatgc agggcttgat aaggtggtgt
     2461 aatttcatca ccttgcgagg caaaaatcac aatagggtta tggatgcgct ttaaatcata
     2521 aacacaatca tgattaatag caatttcacc tcgctccagt ttattaccaa taaaaagatt
     2581 ctcaaccgtt gctgttattt cctctgtact gaagtgataa aatccattcc accaatgttc
     2641 aaaatctaaa aagcgctcgc gctccgtgtc aactgcatca aagagatggt ggtatttatc
     2701 ccaaatggcg gtagtggggt ttaacagttc aaaattttgt acaagccatg ccccatcaag
     2761 gattccatcg ttcaaatcag taatgaaacg agtaagccac acaccgccta aaagcccacc
     2821 gagcaattgc atgggattta cttcttcttc gccactggac caataagaaa tgggagagcc
     2881 attcatcacg agtgggccca ccaagcctgc gcaatcagaa gccagtaacg ccaacatcca
     2941 acccgcctgg caattgccat aaagaatggg tggttggtct tgatgccagg ttttcacttg
     3001 tgcaacaaat tgcttcattg ttgacaatac atcagccagt gtttgatgcg ggatgggttg
     3061 agggtagaac atgacaaaat aaacggcatg accccgatgt agcgcaattc ctatttcaga
     3121 atccctcttc attccaccaa tccctggccc atgacctgcc cttgggtcaa caataatgac
     3181 tggcggctta ttggggtcga aacactgttc aaaacacaca tcatcaattt caagaatttt
     3241 aagtagcgca taattcgttt tgggctccaa ggttctgcca tccagaacca gctcatacct
     3301 aaagcgcaga ggcggtggca tcccttgttg ttcatgttcc atcatgtcat tggcccgctg
     3361 acgtagtgtg tcgaaaaata ggacacttcg ttgccaataa tcaatgtggt aatgaaacaa
     3421 atcattccac agttggtaag attgagaaaa tacttcagtc aatgagggct tttgttcttt
     3481 ggagatagcc tcttcccctc gctttaaatt gtgttcgtcc atgaaatacc gtctcgtttg
     3541 ccgcaacaat taatatatag cttagcacaa agaacactta aacgacttag aaaacaatga
     3601 ggagtggtta ctcgacacca ttagacttca atgcccttat cgcacaaaat agctaaaaaa
     3661 gaaattaagg actttattca ctaatagaaa tcctttttga aagaaaaatt ttaattttag
     3721 ggaagcgaaa ctgaatagtt taactaggct aaaaaaaata tttttttaat ggtaattttt
     3781 acacttttta ctgtttgcgc atgtacttct atgacaacga caaccaatga gtctaaaagt
     3841 aatgataata agaacagcga caaacacagt aaagcatctg ttgggcgcgt ttgggttgct
     3901 catcctagaa ggcactaata ttttttcacc tcttgagcaa ctcaatttga agaagaatag
     3961 gctttgaaag gcatcgaaag ccattaagct taatgccagc caatccctcc agtattgtgc
     4021 ccttcatagg tatgagaaac agtatgtgaa ttagtggctt ttgttgatga agcacacgag
     4081 gtaaacagaa gggttgagct taataatatc actaccccaa taactacttt aaatagtctg
     4141 ataggttgca tatcaatgct ccttgcaatg aaataaggtg actattgaat caatataaaa
     4201 acaacctgta tcattagata acttattatt ataatagcac tattaaaaac acgcgctgcc
     4261 aatcattgtc actttttgaa aaagagatga gcgtactcta ggtattgagt caatgctcct
     4321 gaaatgaaaa atgactaata taacgtgttg tacagcattt atgccgcacc tctagggtca
     4381 tgaaataact aaataaaaag agcacttatc ttttgagggg cttgatgtgt acgcccgaaa
     4441 ggttttgtga caataaatta gatttaatat aattttgaat taatcagctc aacggatatt
     4501 gaacgccata aaccaccttt ttggtaataa aatggcgtta gaactc
//
LOCUS       DACVWI010000214         4500 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.215, whole genome shotgun sequence.
ACCESSION   DACVWI010000214 DACVWI010000000
VERSION     DACVWI010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4500
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.215"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..245
                     /locus_tag="JBH85_13100"
     CDS             <1..245
                     /locus_tag="JBH85_13100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADH dehydrogenase FAD-containing subunit"
                     /protein_id="HAU0947139.1"
                     /translation="GSLATVGRKAAVAEFDRFKISGELAWWFWGGVHVFFLVGSRNRL
                     SVILNWLWSYYTFRANNLLITDDSLNKKNKSGTSEV"
     gene            287..1051
                     /locus_tag="JBH85_13105"
     CDS             287..1051
                     /locus_tag="JBH85_13105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetate decarboxylase"
                     /protein_id="HAU0947140.1"
                     /translation="MDKYLSANSLEGVIDNEFSMPAPRWLNTYPAGPYRFINREFFII
                     AYETDPDLLQAILPPDMELLEPVVKFEFIRMPDSTGFGDYTESGQVVPVRYKGEEGGF
                     TISMFLDCHAPIAGGREIWGFPKKLAKPKLFVEEDTLIGILKYGSIDIAIATMGYKHR
                     PLDTEKVLESVKKPVFLLKNIPNVDGTPLVNQLTKTYLTDITVKGAWTGPGSLELHPH
                     ALAPISNLYIKKIVSVSHFITDLTLPYGEVVADYLA"
     gene            1089..1361
                     /locus_tag="JBH85_13110"
     CDS             1089..1361
                     /locus_tag="JBH85_13110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2282 domain-containing protein"
                     /protein_id="HAU0947141.1"
                     /translation="MNKRPIQNTAVIAAALGAALASIYTYTDWLSSDEITVKRERCYN
                     VARAGKNDCATSQHSCAAQSTADRDPEAFIMLPKGLCERIVGGRSG"
     gene            1354..2667
                     /locus_tag="JBH85_13115"
     CDS             1354..2667
                     /locus_tag="JBH85_13115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HAU0947142.1"
                     /translation="MDSYSKLPLRIRKEIEAQQYTGELLVAGVQLGVIVLLSIINIFS
                     SAGYSPGAPVQSSSLGLWLFAILILLRLWFVYTNQLNPIFLGFFIVAEMALLLFIIWT
                     YYLQFETTPTINLKNPHINYVYVLIALRALRFEPLWVILSGLTAALGWGIIAWQTLSS
                     SGMNVITWDYVTFASTRSVYLGAVFDVILSVLLVTTIIALVLTRAKHTLFQAVEQTSA
                     AKDLSRFFDTSVVEKITTSEKSLQAGYGELRQAAIMFIDMRGFTKASVKLSPSELIGL
                     LAEYQRLLVPIIQKNNGSIDKFMGDGILASFGAVTPSNTYAADALRTVDEIVASVDVW
                     SENRRKKEQIVVGVGIGLASGEVVVGVIGYENRLEYTVIGEAANLAAKLEKHNKEEKT
                     QALTTRDTFLEAVKQGYEDKITKKELNARNVGGVGEPLDLVVLAK"
     gene            complement(2687..3526)
                     /locus_tag="JBH85_13120"
     CDS             complement(2687..3526)
                     /locus_tag="JBH85_13120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HAU0947143.1"
                     /translation="MKPGSPPVMPTIKQMQEFFLNTVLNQQDIAIFEYFCPDEITNEF
                     RFDIYRNTIFQNLRHSLEMTFPAIWKLVGKECADGLALHFIQDKNNLPTTHCLDDWGE
                     KFPLFLKNNPTVSHLLYLKDIAEIEWLKHLSYCSRDCLVFDPQKLQKHLNDRVEKLIL
                     LFNPSVFLYSSSYYLKNIFDLIENPTETGSIDFQQIPSYAVISRQKNQTVIHWITHDL
                     FHFLCHIKAGASLGFAYENTLENNPDFDLLTALQFLLRNELLEDSFIHSNYHLTHANN
                     CPE"
     gene            complement(3489..4322)
                     /locus_tag="JBH85_13125"
     CDS             complement(3489..4322)
                     /locus_tag="JBH85_13125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HAU0947144.1"
                     /translation="MHKIINGAMTGIGLRAPHYAQILEEKPDIDWLEVHTENFLVKGG
                     PLLELLDSISQHYPLSFHGVGLSLGSAEGVCIAHLNRIKTLIDRFQPALLSDHLSWST
                     IGNTYLPDLLPIPYNEESLTIISNNIDKVQNYLKRTLLIENPSSYLEYQTSSYSEPDF
                     LAEIIKRTEARLLLDINNIYVSCSNNKQDPYQYIQRIPHEAVQEIHLAGHSIVYQDNT
                     NFLRIDTHNNYVCPEVWDLYRYAIHYTGLVPTLLEWDTEIPSLDTLLNEARKSACYAY
                     N"
BASE COUNT         1376 a          767 c          942 g         1415 t
ORIGIN      
        1 atggtagctt ggctacagtg ggtcgtaaag cggctgttgc agaatttgat cgtttcaaaa
       61 tcagtgggga actggcatgg tggttttggg ggggagtcca tgtctttttc ctggttggct
      121 ctcgaaatcg tttaagtgtc attttaaatt ggctttggtc ttattacact tttcgcgcca
      181 ataatttgct gattaccgat gattcattga ataaaaaaaa taaatcaggg acaagcgagg
      241 tttagggctc attgaagata ataaggaaat acaaagggag tgattaatgg acaagtatct
      301 ttcagcaaat tctctagaag gggttatcga taatgaattt agcatgccag ctccacgttg
      361 gttaaatact tacccagctg gcccatatcg atttattaat cgtgaatttt ttattattgc
      421 ttatgaaact gatccggatc ttttgcaagc tattttacct cctgatatgg aattattgga
      481 gccggtagtc aaatttgaat ttatacgtat gcctgattca acaggatttg gtgattacac
      541 cgagtcaggg caagtggtcc ctgtgagata taaaggagaa gagggcggat ttaccatttc
      601 aatgtttctt gattgccatg cccctattgc tggtggccga gaaatatggg ggtttccaaa
      661 gaaactggcc aaacccaaat tgtttgttga agaagataca ctcattggca ttcttaagta
      721 tggaagtatt gatattgcca tcgcaactat gggatataaa catcgtccgc tggatacgga
      781 aaaggtattg gaatccgtta aaaagcctgt atttttactt aaaaacattc ctaatgtaga
      841 tggaactcct ttagtgaatc agttgaccaa aacttatttg actgacatta cagtgaaagg
      901 agcatggacc ggaccaggta gcttggagct tcatcctcat gcactggctc ctatctctaa
      961 tctttatatt aaaaaaattg tatccgtttc acattttatt actgatttga ccttgccgta
     1021 tggagaggtt gttgccgatt atttagccta aaataaaaag cgactcctaa aaatggcagg
     1081 aaaatcatat gaataaacgt ccgatacaaa acacggccgt cattgcagct gctttgggag
     1141 ctgctcttgc ttctatatac acctatacag attggctttc atcagatgaa atcacagtaa
     1201 aaagagagcg ttgctataat gtggcgagag cgggcaaaaa tgattgcgct acttcccagc
     1261 attcttgtgc tgcgcaatca acggccgatc gtgatcctga agcatttatc atgttaccta
     1321 aagggttatg cgaacgcata gtggggggaa ggagtggata gttactctaa gttaccgctt
     1381 cgcatcagga aagagataga agcccaacaa tacactggtg aactattggt tgccggcgtc
     1441 cagttgggtg tcattgtatt attaagcatt atcaatatat tttcttcagc tggctattcg
     1501 cctggcgcgc cggtgcaatc atcatctcta ggcttatggc tatttgctat tttgatatta
     1561 ctaaggctgt ggtttgtcta tactaatcaa ttaaatccaa tattcttggg attctttata
     1621 gtcgccgaaa tggctttgtt attatttatt atttggactt attatttgca gttcgaaacc
     1681 acacctacta ttaatcttaa aaatccgcat attaactatg tttatgtttt aattgctttg
     1741 cgtgcgcttc gatttgaacc attatgggta attctctctg gcctcactgc ggctcttggc
     1801 tggggaatta ttgcctggca aactttatcc agttcgggta tgaacgttat tacatgggat
     1861 tatgtgacat tcgcgtcaac tcggagtgtc tatctgggag ctgtatttga tgtcatattg
     1921 tccgttctac tggttactac catcatagcc ttggtattga cgcgtgcgaa acacactctg
     1981 tttcaagcag tagaacaaac tagcgctgca aaagatttat cacgtttttt tgatacaagt
     2041 gtggtcgaaa aaataacaac atctgaaaag tcattgcaag ctggatatgg cgagcttcgt
     2101 caggctgcaa ttatgttcat tgatatgcga ggatttacca aagcatcagt gaaactgtcc
     2161 ccgagtgaac taatcggact gctagcagaa tatcaacgct tactggttcc gattattcaa
     2221 aagaataatg gcagcattga taaattcatg ggggatggta ttttggcaag tttcggtgct
     2281 gtgacccctt caaatactta tgcagcagat gcattaagga ctgtggatga aattgtcgca
     2341 tcggtagacg tatggagtga aaatcgccgt aaaaaagaac agatagtggt cggtgtagga
     2401 attggtcttg cttcaggtga agtagtagtt ggtgtcattg gttatgaaaa tcgtttggaa
     2461 tatactgtaa ttggcgaagc tgccaattta gctgcaaagc ttgaaaaaca taataaggaa
     2521 gaaaaaaccc aggctttgac tacccgggat acttttttag aagcggtaaa acaaggttat
     2581 gaggacaaaa taactaagaa ggaattgaat gcaagaaatg taggtggtgt gggagaacct
     2641 ttggatttag tggtattggc aaaataaccc atattgttct tcacggttat tcaggacagt
     2701 tgttagcgtg agtcaaatga taattagaat gaataaaaga atcttccaat aattcatttc
     2761 ttagtaaaaa ttgtaatgca gtgagcaaat caaaatcggg attattttcc agagtatttt
     2821 cgtatgcgaa cccaagtgag gcccctgctt tgatgtggca taaaaagtga aacaaatcgt
     2881 gagtaatcca atgaatcact gtttgatttt tttgacgaga tatcaccgca taacttggta
     2941 tttgttgaaa atcaatagaa cctgtttccg tgggattttc tatcagatca aaaatatttt
     3001 ttaagtaata agaggatgag tataaaaaca cggaaggatt aaatagcaaa attaattttt
     3061 ctactcgatc atttaggtgt ttttgcagtt tctggggatc aaaaacaaga caatcccgcg
     3121 agcaatagct taaatgcttt aaccattcta tttctgcgat atctttcaaa taaagaagat
     3181 gactaacggt tggattattt tttaaaaaca gaggaaattt ttcaccccaa tcatccaaac
     3241 aatgggttgt tggcaaatta tttttatcct ggataaagtg taaagccaaa ccatccgcac
     3301 attcttttcc aaccaatttc caaatggctg gaaaagtcat ttccagggaa tggcgtagat
     3361 tctgaaaaat ggtattacga taaatgtcga aacggaattc attagtaatc tcgtcagggc
     3421 aaaaatactc aaaaatagca atatcttgtt gatttaatac tgtgttcaga aaaaattcct
     3481 gcatttgttt aattgtaggc ataacaggcg gacttcctgg cttcatttaa taaagtatct
     3541 aacgagggaa tttctgtatc ccattctaac aacgtgggaa caaggcctgt ataatgtatt
     3601 gcatatcgat acaaatccca tacctcggga cacacataat tattatgtgt gtctatccgc
     3661 aagaaattcg tattgtcctg atagacaatg gaatggcccg ccaaatgaat ttcttgtact
     3721 gcttcatgcg ggattctttg gatatattga taaggatctt gtttgttatt agaacaggaa
     3781 acatagatat tatttatatc caacaagagc ctggcttcag tacgcttgat tatttctgct
     3841 aaaaaatcgg gctctgaata cgatgaagtc tgatattcca aataagaaga ggggttttct
     3901 attaataagg ttctctttaa ataattttgt actttatcaa tattattgct aataatggtc
     3961 aaactttcct cattataggg aataggtaat aaatcgggta aataggtgtt tccgatggta
     4021 ctccaggata aatgatcaga gagcaaagct ggttgaaagc ggtcaatgag agttttaatg
     4081 cgatttaaat gcgctataca gactccctca gcagacccta aagataaccc gactccatga
     4141 aagctcagtg gataatgttg gcttatagaa tctagaagct ctagtaaagg cccacccttg
     4201 accaagaaat tttctgtatg tacttcaagc caatcaatat caggcttttc ctctaatatt
     4261 tgggcataat gtggcgctct taggccaata cctgtcatag caccatttat gattttatgc
     4321 atgatatttt ttatccgatt tgaagttttg ttgagcaatt aaaaaactat gtcaaagatt
     4381 taatgatata ttaatgtact cttgagaagt ttcgaacgca atggtcttgg aaaaagctat
     4441 tttcaatggg tattttaaac cataaatatt tttaattcag tgtaaaaatt aaccgcaata
//
LOCUS       DACVWI010000215         4488 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.216, whole genome shotgun sequence.
ACCESSION   DACVWI010000215 DACVWI010000000
VERSION     DACVWI010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4488
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.216"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            347..1165
                     /locus_tag="JBH85_13130"
     CDS             347..1165
                     /locus_tag="JBH85_13130"
                     /EC_number="1.14.16.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HAU0947145.1"
                     /translation="MEFSSRYVAHVPDAQGLVDYSAQENRIWNILFERQLKLLPGRAC
                     DEFLSGLQTLGLNSSTIPQLPEVSERLKAKTGWQVAPVAALISAREFFELLAEKYFPA
                     ATFIRSEEELDYVQEPDIFHELFGHCPMLTDRVYAEFVHDYACKVLTFPEQDWPLLQR
                     MFWFTVEFGLIKTPKGLRAYGGGILSSISETVYCVESDIPVRILFDPVVAFRMPYRID
                     QLQPVYFVIDSYQNLYDFVLSDMGKFMDRARELGEFPPYFDVDPDNPNIHIRAC"
     gene            1272..1949
                     /gene="uvrY"
                     /locus_tag="JBH85_13135"
     CDS             1272..1949
                     /gene="uvrY"
                     /locus_tag="JBH85_13135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HAU0947146.1"
                     /translation="MVKEHYLIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQ
                     ALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIAVTAICSDPLPTRVLQL
                     GAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREM
                     QVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHP
                     NDLSQDD"
     gene            1961..3817
                     /gene="uvrC"
                     /locus_tag="JBH85_13140"
     CDS             1961..3817
                     /gene="uvrC"
                     /locus_tag="JBH85_13140"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HAU0947147.1"
                     /translation="MNDLQLSAELALFLTKLPSEPGIYRMLDEEGTVLYVGKAANLKK
                     RVNSYFSKQNTGVKTRALVSQIKSIEISVTRSETEALLLESNLIKALRPKYNVLLRDD
                     KSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFGPYPGVAAVRETIVTIQKIFKIRNCR
                     DSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLSVEDAIRFLQGKCQIILDELAERM
                     KQAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGDADVIAIEVRPGFACIQCVTIR
                     EGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGFYYLDTSERIPDLIITNQSI
                     TESRSLEYILSQRRGKSCKIQINPRGVKSRWMDFAVNNLRISVAEYVSKHSTIRSRYQ
                     ALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPSEYRRFNIEGITPGDD
                     YAAMEQAVTRRFKRLIDVQLLPDVLIIDGGKGQVSIVKRVLTSLGVEDITLLGVSKGP
                     SRKAGWEKLILVNENREFVLPEDSKALHLLQHIRDEAHRFAITAHRKKRQKTRVESTL
                     ESIEGVGAKRRQALLQRFGGLRELAKAPLEEICKVQGISEQLAKRIYEHFHP"
     gene            complement(3841..>4488)
                     /locus_tag="JBH85_13145"
     CDS             complement(3841..>4488)
                     /locus_tag="JBH85_13145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1566 domain-containing protein"
                     /protein_id="HAU0947148.1"
                     /translation="GPKGDRGEAGSQGLPGPKGDKGEAGPQGLPGPKGDKGETGAVGP
                     QGMPGPKGEAGDDGQGVPAGGETGQVLAKSNDLDFNTMWVDPANSGIRRQLGDKALGG
                     TVIYVNALGTHGLVVANSDQVNASTWWDAHDFISNPAHFDNEGKLYSDWRLPTRFELN
                     LIYMMRNELGNFLAGNYWSSIEKSSANSWVFNSKTGEIKDLAKNKTAAVRAVRAF"
BASE COUNT         1332 a          801 c          965 g         1390 t
ORIGIN      
        1 gttatctttt atgatgcccc agttacctca catacaccag ttggtaattt ttgccatatc
       61 ggaaagttac tcattgcttt ccattgttag agggtatctc aaaaagataa tggtaatcat
      121 gttgacattt agtttactgt taggtaatta ctaaaacaag ttagagagtt tagtgatcat
      181 cataataatg ccaatctaaa acagggtatt ggctaggatg tatactcaaa ataaagcaac
      241 ttttaggtaa aaattctcgt tgactttaat aggctgaccc taaatacaaa taaatattat
      301 tatccctggt tatttatttt tgaatgagat gagtgaagga gagattatgg agtttagtag
      361 ccggtatgtc gcacatgtcc ctgatgctca gggtttagtc gattattcgg cacaagaaaa
      421 tagaatttgg aatattttat ttgagaggca actcaagtta ttgccaggaa gagcttgtga
      481 tgaatttctg tctggattac agactttagg acttaactcc tcgactattc cacaacttcc
      541 agaagtaagt gagcgattaa aggccaaaac gggatggcaa gtagcgccag ttgctgcttt
      601 aatttcagcc agggaatttt ttgaattatt agcagaaaaa tattttcctg cggcgacttt
      661 tattcgaagt gaagaagaat tggattatgt tcaagaacct gatatttttc atgagctttt
      721 tggtcattgt cctatgttaa ccgatagagt ctatgctgaa tttgtccatg attacgcatg
      781 taaggtatta acttttcctg aacaggattg gcctttattg caaagaatgt tttggtttac
      841 tgtagagttt ggattgatta aaacgcctaa agggcttaga gcatacggcg ggggaatttt
      901 atcttctatc agtgaaacgg tatattgtgt ggaaagtgat attcctgtgc gaattttatt
      961 tgatccagtg gtggcttttc gaatgcctta tcggattgac cagctacaac ctgtttattt
     1021 cgttattgac agctatcaaa atttatatga tttcgtgctt tctgacatgg gtaaattcat
     1081 ggatcgtgcg cgagagttag gtgaatttcc accgtatttt gatgtggatc cggataatcc
     1141 aaatattcat ataagggctt gttaatttgt tattttgtaa gacagctgga cttgtagatt
     1201 agagtgacta tgtattgtaa tgattatcga gtcttgttaa catcgaccaa cacagtttgt
     1261 tcattgactg attggtcaag gagcattatt tgattaaagt attaattgtt gatgaccatg
     1321 cattggttag aatgggcatt cgacgattgc ttgaagatat gtcggatgtt gatgtagttg
     1381 cagatgctga aagtggtgag caggctttag cctatgtaaa aacccactcc cctgatgtcg
     1441 tattattaga tatgaaaatg cctgggatag atgggtggga agtgacgcgt cgtttaaaaa
     1501 aaacaaaccc aaatattaaa gtcatagctg ttacagctat ttgctcagat cctctcccta
     1561 ctcgagtatt gcaattaggt gctatgggat accttactaa agagtcaggg gctgaagaaa
     1621 tggctgccgc aattcgtaaa gtggctaaag gtgagaaata tcttagtgcc gagatagcac
     1681 aaaaaatggc aattaatagt cttcaggagt ctcaggattc cccttttgat ttattgtctg
     1741 aaagagaaat gcaagtcatg ttgatgatta ctagcggcat gaatgtacaa gacattgctg
     1801 atagattatt tttaagtagt aaaaccatca atggctatcg atataggatg tttgaaaaat
     1861 tggggattaa aaatgatgtg gagcttactt atttggctat gaagcaccgc attattgagc
     1921 accccaatga tttgtcacaa gatgattaga tgttaatttc atgaatgact tacagctttc
     1981 cgctgaactc gctttatttt taacgaaact cccaagtgaa ccgggcatat accgcatgtt
     2041 agacgaagaa ggcaccgttc tatatgtggg aaaagcagcc aatcttaaaa aaagagtcaa
     2101 cagctatttt agtaaacaaa atacaggagt taagacacga gcactggtaa gccaaatcaa
     2161 atccatagaa atttctgtga caagatcaga gacagaggcc ttattattag agagtaattt
     2221 aattaaagcg ttaaggccaa aatataatgt tttgttgcgt gatgacaaat cctatcctta
     2281 tattcatcta tcaaatcatc cagactttcc aagaattgag ttataccgaa gtaaaaagaa
     2341 gccgccctcc ggtaattttt ttggccccta tcctggggta gctgctgtaa gagaaacgat
     2401 agttaccatt caaaaaatat ttaaaattcg caattgcaga gacagctatt ttaaagctcg
     2461 ttctcgccct tgtttacaat atcaaataaa acgttgtacc gcgccttgcg ttcattatat
     2521 ttctcctgaa aactacaaat tgtctgtaga ggacgccata agatttttac aggggaagtg
     2581 ccaaataatt cttgatgaac ttgccgaacg aatgaaacaa gcggtaagtc aattaaattt
     2641 cgaagaagct gctgttttgc gtgatcagat aaaaaatttg cgcttaattc aagaacaaca
     2701 aggagttgtc cagttacgtg gtgatgctga tgtgatcgca atagaagtac gtcctggttt
     2761 cgcatgtatt cagtgtgtga ctattcgtga aggacaagta ttgaatagtc aaagcttttt
     2821 ccctacagtg ccttatgctg tattagatga agaattggat gccaattcac tttggcagca
     2881 gacttttgaa gcctttattg gtttttatta tttggataca tcagaaagaa ttccggattt
     2941 gataattact aatcaatcaa taacagagag tcgctcatta gagtatattt tgtcccagcg
     3001 acgaggcaaa tcctgtaaaa ttcaaatcaa tccaagaggt gtcaaatcga gatggatgga
     3061 ttttgcagtg aacaatttac gaatttcagt agcagaatat gtcagcaaac attctacgat
     3121 aagatcaaga tatcaggcat taaagcaatt gcttgcgctt gataaaaata tagagcgaat
     3181 ggagtgtttt gatattagcc atactcaagg tgaagcaact gttgcatctt gtgttgtatt
     3241 tgatacagaa ggccctcgcc ccagtgaata caggcgattt aacattgagg gtattactcc
     3301 aggggatgat tacgcagcaa tggaacaggc agttactcgc cgatttaaaa gactgattga
     3361 tgttcaatta ttgccagatg ttttgattat tgatggaggt aaaggccagg tttctattgt
     3421 aaaacgagtt ttaacctctc tgggtgtgga agatattact ttattaggtg tatccaaggg
     3481 gccttcacga aaggcgggat gggagaaatt gatactggtt aatgaaaaca gagaatttgt
     3541 tttgccagag gactccaaag cgcttcatct tttacaacat attcgtgatg aagcgcatcg
     3601 ttttgctatt actgcccatc ggaagaaaag acaaaagaca cgtgttgaat ccactcttga
     3661 aagtatagag ggtgttggcg cgaaacgacg tcaagcgttg ctgcagcgtt ttggcgggtt
     3721 gcgagagttg gctaaagcgc cactggaaga aatttgtaag gtccagggaa tcagcgagca
     3781 gttggcaaag cgaatttatg aacatttcca cccttgatca aaattgaagt tttgccatgc
     3841 ttaaaaggct cttacagcac gtacagcagc cgttttattt ttggcaaggt ctttaatttc
     3901 ccctgtttta gaattaaata cccagctgtt tgccgatgat ttttcaatcg agctccagta
     3961 attacctgcc aaaaaatttc ccagctcatt acgcatcata taaattaaat tcaattcaaa
     4021 acgggtaggg agtctccagt cagaatataa tttaccttca ttgtcaaagt gggcaggatt
     4081 tgatatgaag tcatgtgcat cccaccatgt gcttgcatta acttgatctg agtttgccac
     4141 cacaagccca tgggtaccta gcgcattaac ataaattact gtaccgccaa gagctttatc
     4201 gcctaattgc cgcctaatgc cggaatttgc cggatcaacc cacatggtat tgaaatcgag
     4261 gtcatttgat ttggcaagga cttgacccgt ttcaccacct gcaggcacac cttggccgtc
     4321 atctcctgct tcgcctttag gtcctggcat accttgtgga cctactgctc ctgtttctcc
     4381 tttgtctcct ttagggcctg gtaatccctg cggccctgct tctcctttgt caccttttgg
     4441 accaggtaat ccctgagatc ctgcttcccc tcggtctcct ttagggcc
//
LOCUS       DACVWI010000216         4485 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.217, whole genome shotgun sequence.
ACCESSION   DACVWI010000216 DACVWI010000000
VERSION     DACVWI010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4485
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.217"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..101)
                     /locus_tag="JBH85_13150"
     CDS             complement(<1..101)
                     /locus_tag="JBH85_13150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin"
                     /protein_id="HAU0947149.1"
                     /translation="MFKHGCFILIVFFLASCLSGCLGVLWTGATLAY"
     gene            complement(103..675)
                     /locus_tag="JBH85_13155"
     CDS             complement(103..675)
                     /locus_tag="JBH85_13155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HAU0947150.1"
                     /translation="MNMNLKFKSIIVMMIGALLTGCVAVVVAGAAAGMVYDRRSVTTM
                     EADARLFHVIHKTIIKDPRFRHSRILVSSFNRVVLLVGQTPAASLRVLAERIAQNAPG
                     VKRVYDEITVDNPIPLTQRTKDSWITSQVRSNMLTKKGLESGSIRIVTENGVVYLMGI
                     VSDEQALLAVDVARRVAGVRKVVKIFQYIR"
     gene            complement(679..1278)
                     /locus_tag="JBH85_13160"
     CDS             complement(679..1278)
                     /locus_tag="JBH85_13160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HAU0947151.1"
                     /translation="MIQLEERVRHLFGVTIEAKISAADVLSGSIAKAGKLLVNCLLND
                     GKIFICASGGSSANCMHFSSSMLNHFEVERPSLPVINLCADASCLSSFADEHHFGQVF
                     ARQIQALGQEQDVLLLLTTSGNSDSMLQALHAASERGMDTIALSGRDGGVLANHMGPE
                     DIEIRVASDSTALIRELHLFILHCFCDLIEQSLFGQVLG"
     gene            complement(1305..1661)
                     /locus_tag="JBH85_13165"
     CDS             complement(1305..1661)
                     /locus_tag="JBH85_13165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HAU0947152.1"
                     /translation="MTQEKGKFAEQLALNYLKENGLALVMQNYHCRLGEIDLIMREGS
                     YLVFVEVRSRSNMNFGGGLASITYEKKQKIIKATSHYMIKYRIQDKFPIRFDVISIDG
                     KSNKITWLKNAFDAGC"
     gene            complement(1683..3494)
                     /locus_tag="JBH85_13170"
     CDS             complement(1683..3494)
                     /locus_tag="JBH85_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAU0947153.1"
                     /translation="MLIKQLKLRMFLVLVSLFLLCQCTKTVNSTEPVVTVNKKLKSPY
                     SLPTAAYLAMAKNQQGHEKQSALISAAGRLITDGQWKQGTAILAQTGELTVEQANEKN
                     LLLAKVDIMRDRPRDALAKLARIKEPERLSLYNQIQFHEQLAKSFRSIGSYSESVSER
                     IKLESLLPDEENQVNNRRALWLTLTSLPQEELNTMALEAVNKSEMQGWLQLAVISRKY
                     RNNSKSLLAALDQWQMHFSNHPANQILPNPLDSISGKLLAPPKQVALLLPLSGPLSGP
                     GNAIREGFMAAYKANRGDESTKIKVYDTSKDDITNTYRQAISDGAEYVVGPLTKTQVA
                     TIASMEHPVPTLLLNDTDTSTQSNSYSLGLSPVNEAIQVAIKARSKGYKKALIIAPNN
                     AWGNEVTKAFINQWNEDGGHIVDSLRYEAKQDLNKSMKDFLQITNSQEREKKLKQVLG
                     YNFQSTTSRRQDFDMIFLLAYPSKARQIMPLLKYYYAGDAPVYATSSVYGGSANALKD
                     KDLDGIIFCDMPWVFSHQMGTKNWPEQFNSYNRLYALGVDSYTLATQLNQLILFPADG
                     SNDSTGILYLKPTQQVARVLEWGQFKKGLAHSLGDTV"
     gene            3534..4385
                     /gene="rsmI"
                     /locus_tag="JBH85_13175"
     CDS             3534..4385
                     /gene="rsmI"
                     /locus_tag="JBH85_13175"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HAU0947154.1"
                     /translation="MTNTLATGLGTLYIVATPIGNREDISFRALNTLKSVDLILAEDT
                     RHSMQLLTSLGIKNNLASLHTHNEANKSNEIIELLLHGKSIALISDAGTPLISDPGFP
                     LVKQARQHHIPVVPVPGACALIAALSAAGVPCDSFAFLGFLPAKQSARKHALESSRSV
                     PYTIVFYESTHRIIDCLNDIAEIYGQDYELVLAKEITKTFERFVSGKIKEIKDWLLSE
                     PGHIKGEFVLIFPPRSTNKDPNSHEELLKILLEELPLKQAVAIACRLTNANKNQLYEE
                     ALKLKES"
BASE COUNT         1331 a          986 c          800 g         1368 t
ORIGIN      
        1 tcataggcta gagttgcccc agtccataaa acccccagac agcctgacaa gcagctggct
       61 aaaaaaaaga ctattagtat aaaacatccg tgtttaaaca tgctaacgta tatattggaa
      121 tatttttacg acttttctca ctccagcaac acgtcttgcc acatcaacag ctagcaatgc
      181 ttgctcgtca gaaacaattc ccatcagata gactactcca ttttcagtga ctatccgtat
      241 tgaacccgat tcaagtccct ttttagtcaa catgttactt ctcacttgac ttgtaatcca
      301 actgtctttt gtcctttgag tcaagggaat gggattatca acggttattt catcatacac
      361 tcttttaact ccaggggcat tttgggcaat ccgctctgct agaacgcgta atgatgcagc
      421 gggagtttgt ccaaccagca ataccacccg gttaaaactg gaaacaagaa ttctcgagtg
      481 ccgaaatcga gggtccttga tgatggtttt atgaatcaca tgaaataatc gggcgtccgc
      541 ctccatggta gttacgcttc ttctatcata aaccattcct gctgcagcac ctgcaacaac
      601 cacagcaacg caaccagtca gtaaagcacc aatcatcatt actatgatgg atttaaattt
      661 tagattcatg ttcatttttt atcctaaaac ttggccaaat aaagattgtt cgattaaatc
      721 acaaaaacaa tgcaatatga acaagtgtag ctctcttatc aatgcagtac tgtcagatgc
      781 cactcttatc tctatatcct ctggccccat atgattcgcc aaaacacctc catcgcggcc
      841 acttagtgca atggtatcca tgccgcgttc acttgctgcg tgaagagctt gcagcatgct
      901 atcagaatta cctgatgtag ttagtaaaag taatacatct tgctcttggc ccaaggcttg
      961 aatttgcctt gcaaacactt gaccaaagtg atgctcatcg gcaaatgaac tcaaacagga
     1021 cgcatcagcg cataaattaa tgaccggcaa agaaggtctt tccacttcaa aatgatttag
     1081 catggaactg gaaaaatgca tgcaattagc actagatccc ccactggcgc aaatgaatat
     1141 ttttccatca ttcaataaac agttaaccaa caacttccct gctttagcta ttgaacccga
     1201 caacacatca gctgctgata tttttgcttc tattgtgaca ccaaataaat gccttactct
     1261 ttcttctaac tgaatcattt caaaaccttc tattcattat cttcctagca tcctgcatca
     1321 aatgcgttct ttaaccaggt aatcttgttt gattttccat ctatactaat cacatcaaac
     1381 cgtataggaa atttatcttg tatgcgatac ttaatcatat aatgagaagt tgcttttatt
     1441 attttttgtt tcttttcgta agtaatgctg gcaagccccc caccaaagtt catatttgaa
     1501 cgcgaacgga cctcaacaaa aaccagataa gatccctcac gcataattaa atcaatttct
     1561 cctaaacggc aatgatagtt ttgcattact aatgcaagac cattttcctt taagtaattt
     1621 aaagccaatt gttcagcaaa ctttcctttt tcttgggtca ttattcttgg ctcacttcaa
     1681 aactaaacag tatcccctag tgaatgggct aaaccctttt taaattgccc ccattcaaga
     1741 accctggcta cttgttgagt cggctttaaa tataaaatac ctgttgaatc gttagagcca
     1801 tcggctggaa ataatatcag ttggtttaat tgggtagcca aggtataact gtccacgcct
     1861 aaagcataaa gcctgttata gctattgaat tgttcaggcc agtttttcgt tcccatctga
     1921 tgagaaaata cccaaggcat atcgcagaaa atgatcccat ccaaatcctt atccttcaaa
     1981 gcattggcgc taccgccata aacacttgaa gtagcgtaca caggagcatc tccggcataa
     2041 taatatttta ataaaggcat aatttggcgg gccttggaag gataagccaa taaaaatatc
     2101 atatcaaaat cctgtcttcg gctcgtagtc gattggaaat tatagcctaa tacctgcttt
     2161 agttttttct cgcgctcctg gctattggtg atttgtaaaa aatctttcat gctcttattc
     2221 aaatcttgtt tggcttcgta gcgaagagag tcaacaatat ggcccccatc ttcattccac
     2281 tgattgataa aagctttcgt tacttcatta ccccaagcat tattgggggc aataatcagc
     2341 gcttttttat atcctttgct tcttgctttt attgcaacct gaatcgcttc attaacaggg
     2401 gataagccta aggaataaga attgctttgt gtgctggtat ccgtatcgtt tagcaatagg
     2461 gtaggaaccg gatgctccat tgatgcaatg gtagcgactt gagttttcgt taaaggacca
     2521 acaacatatt cggcaccgtc agaaatagct tggcgatatg tgttcgttat atcgtctttg
     2581 cttgtatcat aaactttaat ttttgttgat tcatctcccc tgttggcctt ataggctgcc
     2641 ataaagcctt cccgtatagc attacccggc ccggataatg gaccacttaa aggcaataac
     2701 aaagcaacct gtttaggtgg agctaataat ttacctgata tgctgtctaa gggattaggc
     2761 aaaatctgat ttgctggatg attactaaaa tgcatctgcc attgatccaa ggcagccagc
     2821 aacgactttg agttatttct atacttacgg gaaataacag ccagctgcaa ccagccttgc
     2881 atttctgatt tgttcacagc ctccagagcc attgtattca gctcctcttg aggtaaactg
     2941 gttaaggtca accacaaagc ccgccgatta ttgacctgat tttcctcatc agggagcaat
     3001 gattctaact tgatacgctc actaactgat tcagagtaac taccaatgga ccgaaatgac
     3061 ttcgccaatt gttcgtgaaa ttggatttga ttatataacg agagtctttc aggttcttta
     3121 attctagcta acttggctaa ggcatctctg ggcctatcac gcataatgtc gacttttgcc
     3181 agtaaaagat tcttttcatt agcttgctca actgttaatt ccccagtttg tgctaaaatg
     3241 gcagttcctt gcttccattg accatcagta attaaacggc cagctgcgga aatcaatgcg
     3301 ctttgctttt catggccttg ttgattctta gccatagcca agtatgctgc agtaggtaat
     3361 gaatatggag attttaattt tttattaact gttactacag gctcggttga gttaactgtt
     3421 tttgtgcatt ggcaaagcaa aaaaagagat accaatacta agaacatgcg aagttttaat
     3481 tgtttaatta acatgttaat tcgccaaatt tgcttttcgc aagaggataa actatgacaa
     3541 acactctagc aacaggttta ggaactctct atatagttgc taccccaata ggaaatcgcg
     3601 aagatatttc tttcagggct cttaatacct tgaaaagcgt tgatttaata cttgctgaag
     3661 acacacgcca ttccatgcaa ttattgactt cgctagggat aaaaaataat ttagcttcat
     3721 tgcacaccca caatgaagcg aacaaaagca atgagataat tgagctgctg ctccatggaa
     3781 aatcaatcgc actaatcagt gatgcaggca cgcccttgat tagcgatcct ggatttcctt
     3841 tagtgaaaca ggctcgccag caccatatcc ctgttgtgcc tgttcctggc gcatgcgctt
     3901 taattgctgc gttaagtgct gccggggtac cctgcgattc ttttgccttt ttaggttttc
     3961 ttccggccaa acaaagtgcc agaaaacatg ccctggaatc atcgcggtca gtgccttata
     4021 ccatagtatt ctatgaatca actcacagaa tcatagactg tcttaacgat attgcagaga
     4081 tctatggcca agattatgaa cttgttttag caaaagaaat aaccaaaacc tttgaacgat
     4141 ttgtatctgg aaaaataaaa gaaattaaag actggctact cagtgaaccc ggtcatatca
     4201 aaggtgaatt tgttttgatt tttccacctc gctcaacaaa taaagacccc aactcgcatg
     4261 aagaactact caagatattg ttggaagagt tgcctttaaa gcaggctgtg gctattgcat
     4321 gcagattgac taatgccaat aaaaatcagc tctatgaaga ggcattgaaa ttaaaagaga
     4381 gctaaaaaga atattgatcg cttatttcca taacattgtc cgtaaatgac ctttttttgt
     4441 cctctaagac caagcaaaga tatcgccttt taagctatat tgttt
//
LOCUS       DACVWI010000217         4484 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.218, whole genome shotgun sequence.
ACCESSION   DACVWI010000217 DACVWI010000000
VERSION     DACVWI010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4484
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.218"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            52..128
                     /locus_tag="JBH85_13180"
     tRNA            52..128
                     /locus_tag="JBH85_13180"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:86..88,aa:Met,seq:cat)
     gene            309..1478
                     /locus_tag="JBH85_13185"
     CDS             309..1478
                     /locus_tag="JBH85_13185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HAU0947155.1"
                     /translation="MLITFHNMDFILFRINLIRYVVLLFIITLNLDCISVAFSSQIIY
                     GTQNAARVTGKNLKRIYFLQLGAFSQKNNAQQLARKIQARTQYPVIISHSGNAFSVRV
                     GPINTQELHQLSIKLSQNSNITPIKHNSSPKQTPTTQTKSQILVKETSRPLPTHSVTK
                     ETIDGKRSWYVTAKVGAQETTPDDQFTVNNDSGFPSPFDQDIYTNSSDSSLLLGIGGG
                     YRFTNIILPAISVGVYYSHFFNMDINGQVIQYSLPEFTNYNYQWKVKSDLVLASAKAN
                     VISWKNLMPFVQGGVGVSSNRASQYYESALPDVTPRISPNFANHTTTVFAYQLGAGLD
                     WEIRPQWLLSLGYEYSDLGKVRSGYGTDSWNRETLSSKNLTSNAGTLGFTYLFHG"
     gene            1531..3996
                     /gene="legT"
                     /locus_tag="JBH85_13190"
     CDS             1531..3996
                     /gene="legT"
                     /locus_tag="JBH85_13190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegT"
                     /protein_id="HAU0947156.1"
                     /translation="MWLPNGNLSNRTDLIFIKIMGEKTNMKYSTRIIITTILLLFTLM
                     GYAGKDPISWRVSGVFPAQSSVGQTYTVTYTFTNQLPFRLAKALIIERSASPNTEFNF
                     NDQCSGRLLNSGESCEVVVALNPLVIGLKTLQLTIAGYSKDRVPLPQTSTLSTGQSLS
                     PIVSFVMDGFPSQLATGSVSSYKFTFTNNGAISATNLSVNVSQSLGTPNYTTTCNNTL
                     TPNGGVCEVDGTYTVTAGNPSIQQVIASLSYTGPSGSPVTAQTFTQVVNPAAPLVGTL
                     VPPNYLPPLMIAGNQYTVQFLFTASGTVDITNNGTITCLEGVNNCNGTINITSSSCTP
                     QTLTNAACQMTATFTAPAANNPPRTYALTATVPYSVGGNPQAPATAITSGTVLAALPT
                     ERTVTLINECDFDVWFSLNGSQLGSSPNCPTTPCPNGTSCNTSTNKCFWNNPTPINGI
                     YLLAALPGVNTNSVTIPVTNADPNIQWSGNISASTLCNGTTCQQAACGNAGGTTSCAP
                     GIGFTQPATQAEITMNLTTSDSYDVEVINGFHIPISMQPIYYKQGLTTIIATPNNYNC
                     GVPGNDTADNGFGACNWNTATVPVIDQVPGNGFYWVTGGGQSCSITSANPGCPLMTLC
                     GLDSNFNQVCGNFLGYWSADQVCGSSNVPAAVQSYFKCNQLLPTSTTPFYPSGAVLSN
                     LMLCSVPTGFTGPRYNTCYNAYPSSSATDIAQCCGCADWWNPVQTNNVVIGANPNTES
                     CTQPGALQPQTNAQWNSFVQPMIQWMKQACPSAYIYPFDDKTSGFTCTNNLSGQPNST
                     SYTIRFCPGGITGLPAGVNEGRG"
     gene            complement(4076..4390)
                     /locus_tag="JBH85_13195"
     CDS             complement(4076..4390)
                     /locus_tag="JBH85_13195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4286 family protein"
                     /protein_id="HAU0947157.1"
                     /translation="MVIYEVNLTIDPEIFVQFQAWLKKHVAEIIQFPGFMQACILKQE
                     KETKSAKEKLTVQYQLDNGDSLSRYLSELAPQMREDGIHLFQTKFSADRRIFEVQEII
                     SK"
BASE COUNT         1342 a         1015 c          854 g         1273 t
ORIGIN      
        1 gaaacagtct tgacataaac acatgaaaaa gacaaaatca cgacctcttg tggctatgta
       61 gctcagccgg ttagagcgcg gcactcataa tgctgaggtc ggtggttcga gtccacccat
      121 agccaccatt tccatcatat gccccctgat agagaagact tgaagtgagc aatcaagccc
      181 tactcccgat ttttgtctct catttgtcac ttcaagcaat aaaatagcca ctgcaatcaa
      241 atcaggccct gcccagaaat aatatttgag atcatcttgc atcacgaaaa gaaattatag
      301 tagcatcgtt gctcatcaca tttcataaca tggattttat tttgttcagg attaacttaa
      361 tacgatatgt ggtacttctg tttattatta cattgaattt agattgtatt agcgttgcat
      421 tttcatctca gatcatttat ggaacacaaa atgctgcacg agttactggg aaaaatctga
      481 aaagaattta ttttcttcag ttaggcgctt ttagccaaaa aaataatgct cagcaattgg
      541 caagaaaaat tcaagcgaga acacaatacc ctgtaataat tagtcattca ggcaatgctt
      601 tctcggttcg tgtggggcct atcaatacgc aagaactgca tcaactcagc ataaaacttt
      661 cacaaaattc caatattact ccaataaaac ataattcatc accaaagcag acaccgacta
      721 ctcagacaaa atcacaaata cttgttaagg aaacttctcg ccctcttcca actcattctg
      781 tgactaaaga aacaattgat gggaaaagaa gctggtatgt aactgctaaa gttggagcac
      841 aagaaacaac accagatgat cagtttacag taaataacga cagtggcttt cccagtcctt
      901 ttgatcagga tatttatacc aatagttccg attcctccct gctattaggc attggtgggg
      961 gatatcgatt tacaaatata attctccccg caatctctgt tggagtatac tattcccatt
     1021 tctttaatat ggacattaat ggacaagtga ttcagtacag cttgcccgaa ttcaccaatt
     1081 acaattatca atggaaagta aaatctgatt tggtcttagc ttccgcaaaa gccaatgtca
     1141 tcagttggaa aaacttaatg ccatttgtgc aaggaggagt tggagtgagc tccaatcgag
     1201 caagccaata ttacgaaagc gccttgcctg atgtcacacc gcgcataagc cccaattttg
     1261 ccaatcatac gaccactgtg tttgcttacc agctgggcgc tggtctggat tgggagataa
     1321 gaccacaatg gttattatct ttagggtatg agtattctga tttgggcaaa gtacggtcag
     1381 gttatggcac tgatagctgg aatagagaga cattgtcctc gaaaaatttg acaagcaacg
     1441 ctggaacttt aggctttacc tatttatttc atggataacc aaaagtgagg cataggctaa
     1501 aattccaaac attgagaaac cataagttat ttgtggcttc ccaacggtaa cttgtcaaat
     1561 agaactgatt taatcttcat aaaaataatg ggtgaaaaga ccaacatgaa atactcaact
     1621 cgcatcataa tcaccacaat ccttctgtta ttcaccttga tgggttatgc tggaaaagat
     1681 cctatcagct ggcgagtcag tggagtattt cctgctcaaa gcagcgttgg tcagacttat
     1741 actgtgactt atacctttac caatcaattg ccttttcgat tggccaaggc cttgattata
     1801 gaacgatcgg caagccccaa cacagaattc aactttaatg atcaatgttc cggtcggtta
     1861 ttaaattcag gagaatcctg tgaagtcgtt gtggcgttaa acccacttgt aatcggcctt
     1921 aaaacacttc agttgactat tgcaggatat agcaaggata gagttccttt acctcaaaca
     1981 agcaccttga gtacaggaca gtccttgagt ccgatcgtta gctttgtcat ggatggtttt
     2041 ccctctcaat tagcgacagg ctcagtttcc agttacaaat ttacgtttac caataacggg
     2101 gctatttcag ctaccaattt atcagttaat gtctcgcaat cattagggac accgaattat
     2161 actacgacgt gcaataacac attgactccc aacggagggg tttgtgaagt cgatggaacg
     2221 tacacagtaa ctgccgggaa tccgtcgatt caacaagtca ttgccagtct gtcttataca
     2281 ggcccatcgg gaagcccggt aacggcacaa acattcacgc aagtagtcaa tccagcagct
     2341 ccgcttgtag gcactttagt accgccaaac tatctacctc cattgatgat tgctggcaac
     2401 cagtatacag tccagttttt attcaccgcc agtggaactg tggatattac aaataatggc
     2461 acaataacct gcctggaagg tgttaataat tgtaacggga ctataaacat caccagctcc
     2521 agctgcaccc cgcaaacatt gaccaacgcg gcctgtcaaa tgactgctac gttcacagcg
     2581 cctgctgcaa ataatccccc acggacttat gctctgaccg caacagttcc ctactctgtt
     2641 ggaggaaatc ctcaagcacc agcgactgcc atcacttccg ggacagtact tgctgcatta
     2701 ccgacagaaa gaactgtgac tttaatcaat gagtgcgatt ttgatgtgtg gttttcgctg
     2761 aatggaagcc aattaggtag ttcacccaat tgcccaacaa caccatgccc aaatggcaca
     2821 agctgtaata ccagtacgaa caaatgcttt tggaacaatc caaccccaat aaatggtata
     2881 tatttattag cagcgcttcc tggcgttaac actaacagtg tgactatccc tgttaccaat
     2941 gctgacccca atattcaatg gagtggaaat atttcggcaa gcactttgtg caatggtaca
     3001 acctgtcaac aagcggcttg tggtaatgct ggcggtacca cctcttgcgc gccaggcatt
     3061 ggtttcacac aacctgccac tcaggctgaa atcacgatga atttaaccac ctccgacagt
     3121 tatgatgtgg aagtcatcaa tggttttcac atcccgattt ccatgcaacc catttattat
     3181 aaacaaggac tcactactat tattgctacc ccgaataatt acaattgcgg agtgcccggt
     3241 aacgatacgg ccgataatgg atttggagct tgtaactgga atacagccac tgtaccagtc
     3301 attgatcaag tgccggggaa tggattttac tgggtaactg gtggtggtca aagctgttcc
     3361 atcacctctg caaatccagg ttgccctttg atgacattat gcggattaga cagtaatttc
     3421 aatcaggttt gtggcaattt tttaggatat tggtcagccg atcaagtctg cggttcaagt
     3481 aatgtcccag ctgccgtaca aagttatttt aaatgcaatc aactcctccc tacttctaca
     3541 acgccttttt atccctccgg cgctgtctta tcgaatttga tgctttgctc tgttcctaca
     3601 ggatttactg gtccaagata caatacctgc tataatgctt atccctcttc ttccgctaca
     3661 gacattgccc aatgttgtgg gtgcgcagac tggtggaatc ctgttcaaac caacaatgta
     3721 gtgattggag caaatcctaa taccgaaagt tgtactcagc ctggtgcctt gcaaccacaa
     3781 accaatgccc aatggaactc ttttgtacag ccaatgatac aatggatgaa acaagcttgc
     3841 ccttctgctt atatttatcc ttttgacgac aaaaccagtg gatttacttg tactaataac
     3901 ctttcaggac aacctaactc tactagctat actatcaggt tctgcccagg aggcatcaca
     3961 ggtcttcctg caggagtgaa tgagggacgc ggataaaata tatagctggt attaacgctt
     4021 agtactttat agttgcaaga aacgagtcgt taataccagt aaacatgaac aacaattact
     4081 ttgatataat ttcctgcact tcaaagatgc gtctgtcagc agaaaattta gtttgaaaca
     4141 aatgaatacc atcctcacgc atctgaggtg ccagctcaga caagtacctt gacaaactat
     4201 ctccattgtc cagctggtat tgaacagtca atttttcctt agctgatttt gtttcttttt
     4261 cctgctttag aatgcaggct tgcataaagc ccggaaattg aattatttcc gcaacatgtt
     4321 ttttgagcca tgcttgaaat tgtacaaata tctccggatc aatcgttagg tttacttcat
     4381 aaatcaccat aatttatctt cccaaattcc cataatttga attcaccaat agcacacaac
     4441 aactgaattt atttttagaa taatgagtca tgccatgatt agat
//
LOCUS       DACVWI010000218         4462 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.219, whole genome shotgun sequence.
ACCESSION   DACVWI010000218 DACVWI010000000
VERSION     DACVWI010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4462
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.219"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            119..1246
                     /locus_tag="JBH85_13200"
     CDS             119..1246
                     /locus_tag="JBH85_13200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HAU0947158.1"
                     /translation="MDMKKYILSLSLLTVINSSAIATTQEGEEAYNKGYYEKAFILLS
                     PEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLAGFYWYLN
                     TPEGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAEQGNSN
                     AALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQYNLGLMYEQGDGVPKDYQKA
                     AEYFEKAANQGHAKSQLELGYLYDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADM
                     YFYGDGVGKSLEQSVYWMQKAAEQGYGKAQNQLGIYYRDGIGVAADPVKAYAWFTAAK
                     NNGFEKAASNASDLEKSMNPEDLSKARILGQQYTDNYKAKK"
     gene            1513..2232
                     /locus_tag="JBH85_13205"
     CDS             1513..2232
                     /locus_tag="JBH85_13205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947159.1"
                     /translation="MTERKKTTVKNKKAPVKKSQLTVSLLIFIDLISILLSLMPGVAA
                     FSLTGLFLYYGFSKTWLVLICSPFVLLFSFILIIALIRISLPKLKPGRYKRELNKTMI
                     AWFCHFALSRAAKIVGLIHLLQSFNVIKYLYWRALGIKVSFRVMNSFDIDFVDCPLIS
                     IGKDVTLASQVSISCHSDVGNYLFLSPVVIEDNVFVGMTTKIGPGTTIKKGAWIGYGN
                     AFVNQVIEENAKIGNVRPVPE"
     gene            2375..3874
                     /locus_tag="JBH85_13210"
     CDS             2375..3874
                     /locus_tag="JBH85_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947160.1"
                     /translation="MKKIVYVLLFISSLTHANCVIYFNEQPLNKRLSDPLYSLLSNTE
                     ICPQSIQELRNSMRLRGLKEVIGMVANRGRNNPVEGSFSFFESVYGRLATNQLIAKGE
                     LFLGYFTRLKDGLIILDQKPRKGKLLIEAISWDAKKALYNFYELRGIEHGGVRWFYRG
                     NSKDAYKDNTWLYRISPEGENHFGSRMRCSACHNSGGPILKEQSLPHNDWWTNQRPLI
                     LLPNKPDGDVSQLLEQISDASVFANDVITGMRHLSDSKKMNAFQGKLSLQEQLRPLFC
                     TTEINLQSSTDSSETVVSIPSAFWLNPLLGDIHLTISMEDYNQLLKEFGTRFPETSLQ
                     DADHAWLTPVKGEADLNAIKQLIQHNIISKKFAQSVLMIDFTNPLFSSKRCELLKLIP
                     ESYQTNSKEWVEQFLINLRNSEEQFKGARQLADYMSKEQLDSKELMKKIKIYEYFLNQ
                     SISTRSGLRKHFQHLIELRKAVFRSELSQNPLGQILEPGFRVIFPESQQ"
     gene            complement(3940..>4462)
                     /locus_tag="JBH85_13215"
     CDS             complement(3940..>4462)
                     /locus_tag="JBH85_13215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947161.1"
                     /translation="LLRIMYYLFPLLAAISILYFILYTFHSFSSSQEHINPLIVLIPL
                     TTAGIIFFNAYFQDGTIKSDYPSWLKLSLRVYRVILFLLALMMTYKILSDFSLDTNAF
                     IYLLVAVLFSFTYAITAFLNENQEKQWIYMGNIGTAIFFIVTLFLCNLPYIPVEFTIG
                     GGNAINFITSTLS"
BASE COUNT         1451 a          720 c          943 g         1348 t
ORIGIN      
        1 agagttataa tatcttgatg aaagatataa aaaaaacaaa atgaaaagta attttataca
       61 ttgctgaatt tatgtcatat actttaaagc gatagctctt aaaaataagg tatatatcat
      121 ggacatgaaa aaatatattt tatctctttc tctactgacg gtgattaact cttcagctat
      181 cgctacgact caggaaggtg aggaggccta taacaagggg tattacgaaa aagcatttat
      241 tttgttgtct cctgaagcgg ataaaggaga tgccaaggct caatatttgc tgggtaagat
      301 gtattataat gcccaaggtg taacttataa tccggaaaaa acagagcaat tattacttgc
      361 ctcagcgaat caaggcaatg tcgatgccca ggtattgtta gccggtttct attggtacct
      421 taatacacca gagggctata aaaaggcgtt cgaatggtat cagaaagcag cggatcaaaa
      481 taatgcggat ggtcaatatg gcttgggcta tatgtatgat acaggaactg gtgtacctca
      541 gaattccgat acagccatgg tatggtataa aaaagcagca gagcaaggca actctaatgc
      601 ggctttggct attggttata attatgatac cggtacaggg gtgaaaaagg ataagactca
      661 agctctcaac tggtatgcaa aagcagctga cttaggtaat gccagcgcac aatataatct
      721 tggtttgatg tatgagcaag gggatggtgt tcctaaagat tatcagaaag cagcagagta
      781 tttcgagaaa gcagcgaatc aaggtcatgc caaatcgcaa ttggagttag gttatttata
      841 tgattctgga aaattaggta aatcggatct gcaaaaggct gctttttggt atcaaaaaag
      901 cgcagatctg gggaatgcca atgcgcaatt taatttagct gatatgtatt tttacggtga
      961 tggggtcggt aaaagccttg agcaatccgt atactggatg caaaaagcag ctgagcaagg
     1021 gtatggtaag gctcaaaatc aattaggtat ctattacaga gacggtattg gtgttgctgc
     1081 tgatcctgta aaagcttatg cttggtttac agcagccaag aataatggct ttgaaaaagc
     1141 ggcgagcaat gccagtgatc ttgagaaatc tatgaaccca gaggatctga gtaaggcgag
     1201 aattttagga caacaatata cggataatta caaggccaaa aaataaatgc ctgttacctg
     1261 ttttcaagag ctagggatac tgcatttgtg ggctatggga gtgtgcgaga gaattctcgc
     1321 atacactcgg gttcggcagc ccaaaaatag aaaaatataa aattaatttc accagaataa
     1381 agagacctct ttgaatttaa gaatgtatct tccaatcttt tacttgtttt tgttagtata
     1441 cctccaggtt taaataaaac aacctcaaag gttggcaaat gaattgtcta ttattttcaa
     1501 ggaaatcaca ggatgacgga gcgcaagaaa acgacagtca agaataaaaa agcacctgtc
     1561 aaaaaaagtc agctgactgt ttctttattg atttttattg atttgatttc tatattgctc
     1621 agtttgatgc ctggcgtggc tgcatttagc ttaaccggtt tgtttttgta ttatgggttt
     1681 tcaaaaacct ggcttgtttt aatttgctca ccgtttgtat tacttttttc ttttattctt
     1741 atcattgcac ttatcaggat aagccttcca aaacttaagc caggtcgcta taaacgagag
     1801 ttaaataaga ccatgatcgc ctggttttgt cattttgcac tctctcgtgc agcgaaaatt
     1861 gttggtttga ttcatttatt acaatccttt aatgttatta aatatttgta ttggcgtgca
     1921 ttgggaatta aagtgtcatt tcgcgttatg aactcatttg atatcgattt tgtggattgc
     1981 cctctcattt cgattggaaa ggatgttacc cttgccagtc aagtctctat cagttgtcat
     2041 tctgatgtag gaaattatct ttttttatcg cctgtggtga tagaggataa tgtttttgtt
     2101 ggaatgacga ctaaaattgg cccaggaaca acaattaaaa aaggggcctg gataggttat
     2161 gggaatgctt ttgttaacca ggttattgag gaaaatgcaa aaattggcaa tgttagacct
     2221 gttcctgaat agaatgaaat gttttatctt aagtttggat taataaaaat cagaatttag
     2281 tgcattgttt tcccggttaa cttaatgaat ccagattact gcaatcaggc tttgaagccg
     2341 ctgattattt ctttgattaa acggatgttc cagaatgaaa aaaattgttt acgtcttgtt
     2401 atttatttct tcgctgactc atgccaattg tgtgatctat tttaacgaac agccgcttaa
     2461 taaaaggtta tctgatcctt tgtattctct gttgtccaat actgaaattt gcccgcaatc
     2521 gattcaggag ttaagaaatt ccatgagatt gagaggatta aaagaagtca tagggatggt
     2581 cgctaataga ggaagaaata atcctgttga aggcagtttc agtttttttg aatcagtgta
     2641 tggtcgatta gcaactaacc aattgattgc aaagggggag ttatttctgg ggtactttac
     2701 tcgtttaaaa gatggcctaa ttattttgga tcaaaaaccc aggaaaggta aattattgat
     2761 tgaagcaatc agctgggatg ctaaaaaggc gctttataat ttttatgaat tgcgaggaat
     2821 agaacatgga ggcgtacgtt ggttttatcg aggaaattcg aaggatgctt ataaagataa
     2881 cacctggtta tatagaataa gtccagaggg cgaaaaccat tttggcagtc gtatgcgatg
     2941 ttcagcttgc cacaactccg gcgggccgat ccttaaggaa cagtctcttc ctcataatga
     3001 ttggtggact aatcaacgtc cgcttatttt gctccccaat aagcccgatg gcgatgtgag
     3061 ccaattattg gaacaaatca gtgatgccag tgtatttgca aatgacgtga taacaggaat
     3121 gcgacatttg agcgatagta aaaaaatgaa tgcatttcaa gggaaactgt cattgcagga
     3181 gcagttacgg cctttatttt gtactaccga aataaatctt cagtccagca ctgactcatc
     3241 agaaaccgtt gtatccattc catcagcgtt ttggcttaat ccactattag gcgacattca
     3301 tttaaccatt tcaatggaag attataatca actattgaaa gagtttggaa ctcgtttccc
     3361 agaaacgtct ttgcaagacg ctgatcatgc ctggcttaca cctgtcaagg gggaggctga
     3421 tctcaacgcg attaagcaac ttatccaaca caatataatt agcaaaaaat ttgcacaatc
     3481 agtgctgatg atcgatttta ccaatccttt gttttcatca aaaagatgtg agttattaaa
     3541 attaataccg gaatcctatc aaacaaacag caaagaatgg gttgaacaat ttctgattaa
     3601 tttaagaaac agtgaggagc aatttaaagg cgctcgtcag ctagctgatt atatgagtaa
     3661 agagcaattg gattcaaaag agctaatgaa aaaaatcaaa atttatgaat actttcttaa
     3721 tcagtctata tcaaccagat caggattaag gaaacatttt cagcatttaa tcgagctgcg
     3781 aaaagcggtc tttcgtagtg aactgtcaca aaacccctta gggcaaattt tagaaccagg
     3841 gtttcgggtg attttccctg aaagtcagca gtagacaaga agaggtctat tattggctct
     3901 gtgcatgaca aaaaactgcc atgcgctgag tattattttc tacgaaagag ttgaggtgat
     3961 gaaattgatt gcatttcctc caccaattgt gaattcaaca ggaatatagg gcagattaca
     4021 cagaaacagg gtgacaatga aaaatattgc tgtacctata tttcccatat aaatccattg
     4081 cttttcctgg ttttcattca aaaatgctgt aatggcataa gtgaaactga atagtacggc
     4141 aaccaataag taaatgaaag catttgtatc tagtgagaag tcagaaagga tcttataagt
     4201 catcattaaa gccagaagga acagaatgac tcgatagact cttaaagata attttaacca
     4261 ggaaggatag tctgatttaa tagttccatc ctgaaaatag gcattgaaaa atatgatacc
     4321 tgctgtagtc agtggaatta gtactattaa cgggttaatg tgttcctgac tgctcgaaaa
     4381 agaatgaaat gtatataata taaaatagag gatacttatt gctgccaaga ggggaaacag
     4441 gtaatacatt attctaagta at
//
LOCUS       DACVWI010000219         4456 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.220, whole genome shotgun sequence.
ACCESSION   DACVWI010000219 DACVWI010000000
VERSION     DACVWI010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4456
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.220"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            171..362
                     /locus_tag="JBH85_13220"
     CDS             171..362
                     /locus_tag="JBH85_13220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HAU0947162.1"
                     /translation="MLYWALIFLIVAIVAGLFGFRGVASAATGIAKVLFFLFIVMFIV
                     LLVFSLLGGTPEPVVIVKP"
     gene            511..804
                     /locus_tag="JBH85_13225"
     CDS             511..804
                     /locus_tag="JBH85_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947163.1"
                     /translation="MNVNSENTQSGEALTTEDYSKAMNFIGQNLLSSLTQSVEKLPPQ
                     LRNRRLVCQALSAFLTNVIYKQFPEQPESCQQMLDDITKHVSMQLDKIPQPSK"
     gene            complement(1004..1441)
                     /locus_tag="JBH85_13230"
     CDS             complement(1004..1441)
                     /locus_tag="JBH85_13230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947164.1"
                     /translation="MKKSSPVYSLLLLSAITFSPVIKASPIGMMVDIYCPITQGGPNV
                     ITNFGDYIGGYGMENILSQNNPIYFKSISLAHDVPAQLGNYYNETTSYNSTTGQVTCS
                     YISNNPTEPRFAVAYTLTNGRGGSVQWQSGNSINIIFPVGLKS"
     gene            complement(1636..2715)
                     /locus_tag="JBH85_13235"
     CDS             complement(1636..2715)
                     /locus_tag="JBH85_13235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096420.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase"
                     /protein_id="HAU0947165.1"
                     /translation="MKSKSINLCFFLFILYFGSPILLAQPSRVDNIINELVQPIIETH
                     RTPGLAIAIYYNGKDYYYNFGFADRKSKKPVTKNTIFELASITKIFISTLVALEVQKG
                     KLNVTDYAVQYTPELSKTNGLPIDRVQIVHLATHTASFPKQMEQFGVNKGNIKAFFAR
                     LKTWRPPVKIGTQYKYSNIGFGYLGYVLENASNETLPNLLKSNITKPLGMSHTFFNVP
                     ENLANYEAQGYRPKNKPAPYYRPANFLGGGALRSSAADMLVFLKANLGVQPGTASPEL
                     LSAMQYAQQPFFEVNPNFVMGLGWQRVKRGRHIVITKNGANQGFSTFIGFSPAKKLGV
                     VVLINQARGKATWLGNQILNSLLRL"
     gene            3256..4083
                     /gene="lem24"
                     /locus_tag="JBH85_13240"
     CDS             3256..4083
                     /gene="lem24"
                     /locus_tag="JBH85_13240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem24"
                     /protein_id="HAU0947166.1"
                     /translation="MWIFKDITDRYYKKILDSYQLQADEKTYKGKEAELLIQRNELAR
                     CLIKTISLMEVKTQEDYANYFKRVSDEINSALQAAKNAVKEYNEEHNTDFTTDLYESF
                     FTYSLSNFIEVVSDLFQKSPSIITNIMDESLFCNSRNVPWVYQLSFVFCDYILEKEFE
                     FITTKASRDIFDAKKQLVLKYIQKAADLYPRYEKEDFSDCHEMVNILLLSMRSEENNL
                     QKRRNQDSSTSYMYSYFTQTLYNASGKLMGKGQLGQKIDLLIEEFNERAMNKGPSYT"
     gene            complement(4186..>4456)
                     /locus_tag="JBH85_13245"
     CDS             complement(4186..>4456)
                     /locus_tag="JBH85_13245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="patatin"
                     /protein_id="HAU0947167.1"
                     /translation="HFLIFVFKAALKNYDKHDFILLLKNLKHLHHSIELIRNKPFHSD
                     DRFYGQWSFEGHDPKRILEFIKSDDISGLMTILEDKKALPNNKPN"
BASE COUNT         1407 a          743 c          826 g         1480 t
ORIGIN      
        1 tttctatatt ttggataaat agtctacaat tttagtagga tgactataaa taagtatttc
       61 aatttctttc gtttttataa gtgagatgag caaaaacaga tggatctgat tttgctctgg
      121 taaaaacaat tcaggaagaa cttattattc tgaaagacag ggagtttatc atgttatatt
      181 gggccttaat ttttcttatt gttgcaattg tcgcaggttt atttggattt agaggggtag
      241 catcagccgc aacagggata gctaaagttc tgttcttcct ctttatcgta atgtttattg
      301 tgcttttggt ctttagtctt ttgggtggca caccagagcc tgttgtcatt gtaaaaccat
      361 agctacatcc tatataagtc ctcttaatga tgtattttgt tgttttaatt gataatcaag
      421 ctgcttttac ggaaagaatt gaaacagtcg ttgaagtagc ttgagataga ctctataatc
      481 tggcttgctc tcacactgac aggataaaaa atgaatgtga atagtgaaaa cactcaatca
      541 ggcgaagctc taactactga agattattcc aaggcaatga attttatagg ccaaaattta
      601 ttgtcatcat taactcaatc tgtagaaaag ttgcctccac agcttcgtaa tcgcaggtta
      661 gtttgtcagg ctttgtctgc atttttgact aatgttattt ataaacagtt tccagagcaa
      721 cctgagtcat gccaacaaat gcttgatgat attactaagc atgtcagtat gcaactggat
      781 aaaatccctc aaccatcaaa gtaaaacgct agtaatctgt atcagctaat ttggcccgag
      841 ttgaaatcat ataaatcatg cgtttcagct tgaatacccc aattatcagg tatgttcttc
      901 tgcttggttt ggctttgatt gtagggtccc agcaaatcaa ttccagaaag agttgctggg
      961 aggcgaagaa gacagtcagg cattttaatc cagtaaactt tggttaactt tttagaccaa
     1021 ctggaaaaat gatattgatt gaattccctg actgccattg gacagaaccg cccctgccat
     1081 tggttaaggt atacgccaca gcaaagcgag gttctgtcgg gttattgctt atgtaactgc
     1141 aggtgacttg acctgttgtg ctgttgtagc tggtcgtttc attgtaataa tttccaagtt
     1201 gagctggaac atcatgggct agcgaaatgg atttaaaata aataggatta ttttgagaca
     1261 aaatattttc catgccataa ccaccaatgt aatctccaaa attagtgatg acatttggcc
     1321 ctccctgggt aatagggcaa tagatatcca ccatcatacc gataggactt gccttgataa
     1381 caggcgaaaa ggtaatagca gaaagcaata acaacgagta tacaggactg gattttttca
     1441 ttgaaacttc ctttttcagt tatttgataa gttgttggtt tgacctgagg ctctgttcgt
     1501 cattagttta gattaaaatc atactatcca tattgtaagt caagacgcac agagaatagg
     1561 gtcaaggata atcatgttgc acgacatttt gattgtcaat gcccatgagt ctatgcttaa
     1621 aaatagtcct ttaagctata acctaagcaa actattaaga atttggtttc ccagccaggt
     1681 tgccttgccc cttgcctgat tgattaatac gacgactccc agttttttcg caggagaaaa
     1741 accaataaag gtgctaaatc cctgatttgc tccattttta gtgatcacaa tgtgcctccc
     1801 tcttttcact ctttgccaac ctaatcccat aacaaaattt gggttgactt caaaaaatgg
     1861 ttgttgggca tactgcatcg cagaaagtaa ttctggtgat gcggtgccag gttgaactcc
     1921 taaatttgct tttaaaaata ccagcatgtc agctgcagaa gagcgcaaag cacctccgcc
     1981 tagaaaattg gcaggtctat aataaggtgc tggcttattt ttaggtcgat aaccttgagc
     2041 ttcatagtta gcgaggtttt ctggtacatt aaaaaaagta tgcgacattc ccaatggctt
     2101 ggtaatattc gattttaaca gattaggtaa agtttcgttt gaggcgtttt ccaatacgta
     2161 tcccaaatac ccaaaaccaa tattggaata tttatattga gttcctattt ttactggagg
     2221 acgccatgtt ttaagacggg caaagaaagc ctttatattg cctttattaa caccaaattg
     2281 ctccatttgt ttgggaaagc ttgctgtgtg ggtcgccaga tgcacaattt gaaccctgtc
     2341 aattggtagt ccattggttt ttgaaagttc aggtgtatat tgaacggcat aatctgttac
     2401 attcaatttt cctttctgaa cttccagggc tacaagagtg ctaatgaata ttttggtaat
     2461 cgatgccaat tcaaaaatag tatttttagt gacgggtttc ttacttttcc ggtcagcaaa
     2521 tccaaaatta taataataat cctttccatt ataataaatg gcaatggcta agccaggagt
     2581 ccgatgtgtc tcaataattg gttgaaccag ttcattaatt atattatcca ccctggacgg
     2641 ttgtgccaaa agaattggac tgccaaagta tagaatgaat aaaaaaaagc ataaattaat
     2701 ggattttgat ttcatgatta atttcttttg ggaaaatata ataattattt tttctttatt
     2761 ttgcatcgtc aggacatctt gtagcgattc tatcctgatt gtgtaagggc tccaaagcaa
     2821 aaaccgtgtt tgcgttctac agattgttag tctcagcatt cttgattaat tatcgatctt
     2881 ttttagaaaa gagccaaata attgctttga gttgaatgtt ttaatcaata ctgtttttaa
     2941 gtcctgtaag tatctttcgc tgtagtgttt ttagttaatt gatattttca aaaaaccgaa
     3001 tacagatact tttcctataa cttacaatga gttactatta gccatcatgg ctattcctac
     3061 tgttttttga acatttattt ataattcttg gcagttatca atggattacc aatacatcag
     3121 acaaggaaat catgtgtttg ctgtcattac aatattgact atcgcccgta atagaaaagg
     3181 aagacgttat tgttcttgat aatcagcgac aatttttgca aatactttct ggatcactaa
     3241 ttaaagaggt agataatgtg gatttttaaa gatattaccg accgctatta taaaaaaatt
     3301 ttggatagct accaattgca ggcagatgaa aaaacatata aaggcaaaga agcggaatta
     3361 ttaattcaac gaaatgagct tgccagatgt ttgattaaga ccatttcatt aatggaagtt
     3421 aaaacccaag aggattatgc taattatttt aaacgagtct ctgatgaaat taactcggca
     3481 ttacaagcag ccaaaaatgc tgtcaaagaa tataatgaag aacataatac tgatttcaca
     3541 acagatttgt atgaaagttt ttttacatac agtttaagca attttattga agtcgtatct
     3601 gacctgtttc aaaaaagtcc ttctattatt actaatatca tggatgagtc attgttttgc
     3661 aatagtagaa atgtaccctg ggtgtatcag ctgtcctttg tattctgtga ctatatcctt
     3721 gagaaggaat tcgaatttat aaccactaaa gccagcagag atatttttga tgcaaaaaaa
     3781 caattggttc ttaaatatat acagaaggcg gctgatcttt atcctcgcta tgaaaaagag
     3841 gatttctctg attgccatga gatggtaaat atcctgttac ttagcatgcg ttctgaagaa
     3901 aataatttac aaaagcgcag aaatcaggat agtagcacaa gttatatgta ctcctatttt
     3961 acacaaacac tttataatgc ttccgggaaa ttaatgggga aggggcaatt agggcaaaaa
     4021 atagatttat tgatagagga atttaatgaa agagcaatga acaagggacc atcgtatact
     4081 taattgttta ttttccaaaa caaggcagaa agatcacttg attaatagta aaaacaccaa
     4141 ttcaagttga tttgttaact cagtgacgct ttggatttaa acctgttaat tcggtttatt
     4201 attgggcagc gcctttttat cttctaaaat agtcattaat cctgaaatat catcgctttt
     4261 aatgaattcg aggattcttt tgggatcatg cccttcaaaa ctccactgtc cataaaatcg
     4321 gtcgtcagaa tgaaacggtt tatttctaat taactcgata gaatgatgaa gatgcttcag
     4381 gtttttcaat agtaatatga agtcatgttt atcgtaattt tttaaagctg ctttaaaaac
     4441 aaatatcaaa aaatgt
//
LOCUS       DACVWI010000220         4388 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.221, whole genome shotgun sequence.
ACCESSION   DACVWI010000220 DACVWI010000000
VERSION     DACVWI010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4388
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.221"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            36..1313
                     /locus_tag="JBH85_13250"
     CDS             36..1313
                     /locus_tag="JBH85_13250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947168.1"
                     /translation="MATNETELQVLIQHDSKSTITTSSLDSTDKDPKASTGTPEIESA
                     SLAQIVDTQKQLSQVKESLESIVDSIAENPSLITRAASAWGELPMWQKVTGGLVLTAP
                     TLAVGLFAHIGVLLVIGGVTGLTYTAGAIVLDDHHTCNVNIAKRLKEGLFGLADLLQI
                     TIEALDAIRKKFAEEIEKFKNENLRLTDNIDRLGNEVESLSAQVELYMEIEKMLRKDT
                     NEMEQTVKKLQESTTKQTDLLEKNQKELSKIRKEYEKSQLQLAEKIAELHEVRLSLGL
                     EVQKAKTVAKTLEGTVQTLTGTVIADEEQRVSFQKKLDGFLNDKQLSFDQVAERICKA
                     EEELKKVKEELRQSNDRYSELLKRQEQQVERLEKLGLHKLERIVDKENVKPSNDPVHS
                     GLLSHGIYSTPKGKVTQPKVEVVEDRQTIALVN"
     gene            complement(1676..3679)
                     /locus_tag="JBH85_13255"
     CDS             complement(1676..3679)
                     /locus_tag="JBH85_13255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HAU0947169.1"
                     /translation="MGLYMEKMLINAMQTEEIRVALIKNNQLFDLDIECPGEIKKKGN
                     IYKAIVTRREPSLDAVFVEYGSKRQGFLPLKEIAPEYLSKNPEEFGDEKPPITSLIRE
                     GQELLIQVDKEERGNKGAALTTFITLAGCYLVLMPNNPHSGGISRRIEGDERDELRET
                     LNALTLPEDMGLIIRTAGVGKSLEELQDDLNMLCNQWQSIKEAYNSELAPCLIHQEGD
                     VIIRSIRDNLRKSISEIIIDDQISYIKAKQYIERVKPEFLPNLKLYNSSIPLFNFYQI
                     ESQIETAYQRQVMLPSGGALVIDRTEALVSIDINSAKATGGADIEATALNTNLEAADE
                     IARQLRLRDLGGLVVIDFIDMSSSKNQREVENRLKEALQADRARIQVGRISRFGLLEM
                     SRQRLRLSLGETAQEICPRCEGRGTVRSIQSHGLSITRLIEEEALKEKTAEIQVQLPP
                     EMATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTITRLKEDNVGKSKKPSYSL
                     IQQPEVHVPSSDKEPVSHDEPAVKSFAEHRVIKHPQTSFIKRLWTSLFGGHSVAHTVT
                     QEPGKKHHRAQNQGKHASSKSSGGDKRQQGSNANRRRRSGGGQQRSSSGNTNAAASTH
                     QQRKKSNANQQSHGSQQSNRSIPAKNEGNKKREAILAKEPEEK"
     gene            complement(3742..4053)
                     /locus_tag="JBH85_13260"
     CDS             complement(3742..4053)
                     /locus_tag="JBH85_13260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947170.1"
                     /translation="MKGLFFPTHLICKRYIIQCAPLTTEVTCVRSVHKVMGQLKVPHP
                     ASLITLFFKNKIEQLGNRLLSFHQNYRDQDINFLTPSLCRFKTNARYGTRKINFMARK
                     L"
     gene            complement(4016..4213)
                     /locus_tag="JBH85_13265"
     CDS             complement(4016..4213)
                     /locus_tag="JBH85_13265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947171.1"
                     /translation="MLGRKNKMRFHLSRRYKEATQYQSKIDNYFDRYLCMPDMLYTNY
                     ELLPGFCTPDERPFFSNPLNL"
BASE COUNT         1285 a          825 c          921 g         1357 t
ORIGIN      
        1 catctaagga agatttttaa tcgtaaggag taaatatggc tactaatgaa acagagcttc
       61 aagtattgat ccaacatgat agcaaatcaa caatcactac ttctagcttg gacagtactg
      121 ataaggatcc taaagcaagt actggcactc ctgaaattga aagcgctagt cttgcccaaa
      181 tcgtcgatac ccaaaaacaa ctgagccaag ttaaagaaag cctggaatca atagtagaca
      241 gtatagcgga aaatcctagc ctgattactc gcgctgcgtc agcctggggc gaactgccta
      301 tgtggcagaa agtcacgggt ggccttgtcc tgacagcgcc tactttggca gtaggattat
      361 ttgcgcacat tggcgtctta ttagtaatag ggggagttac aggactaacc tataccgcag
      421 gtgcaattgt tttggacgac caccatacat gcaatgtgaa tattgccaaa cgattaaaag
      481 aagggctttt tggtttggca gatctgttac aaattacgat tgaggcattg gatgcaattc
      541 gcaaaaaatt tgctgaagaa attgagaaat ttaagaatga aaacctcaga ttaactgata
      601 acattgacag gctgggcaat gaagtggaat cactgagtgc tcaggttgaa ttatatatgg
      661 aaattgagaa aatgctccgt aaagatacaa atgaaatgga gcaaaccgtc aaaaaacttc
      721 aagaatctac aacaaaacaa actgatttat tggaaaaaaa tcaaaaggaa ttgtcaaaaa
      781 ttagaaagga atacgaaaaa agccaattgc agttagccga aaaaatagct gaattacatg
      841 aagtcagact gtcgttgggt ctcgaagttc aaaaagctaa aacagttgcg aaaacgttgg
      901 aaggtacagt ccagacttta actggaacgg tcattgctga tgaagagcaa cgtgtttctt
      961 ttcaaaagaa actggatgga ttcctgaatg acaaacagct cagctttgat caagtagctg
     1021 aacgaatttg caaggcagaa gaagaactta aaaaagtcaa agaagaatta agacaaagca
     1081 atgatcgtta tagtgaactg ttaaagcgtc aggaacaaca ggttgaacgt ttggaaaaat
     1141 tgggcttgca taaattggaa agaatagtag acaaagagaa tgtgaaaccc agtaatgacc
     1201 ctgtccactc aggtttgctt tcccatggaa tctatagtac gcccaagggt aaagtcaccc
     1261 agcctaaagt agaggtagta gaagatagac aaactattgc tttagtcaat taagagaagg
     1321 atttaaggaa gaagaatcag gctgttttaa aggttataat tttaagtaac cggttaaggg
     1381 atatgcaatc aaagaatatt aagtcctctg tctttcccgc gaaggcggga atccatctaa
     1441 aaattaacct atatactagc tttatggata gattcccgcc ttcgcgggaa agacgactca
     1501 aatgatcagg cttataaaca gaagaatttg catatcccgt gaatagttac aattttaaaa
     1561 tcggtatcct gacaagaaag agtgctgtgt tttacccgca caatccagag ttaactggac
     1621 tgtgcggata agtgcttatt gaaaaggtga ataggcaaat aattgatatg gcggcctatt
     1681 tctcctctgg ctctttagcc agtatggctt cccttttttt gttgccttca ttttttgcag
     1741 gaattgaacg attgctttgt tggctgccat gactttgctg atttgcgtta gatttttttc
     1801 gttgttgatg tgtgctggcc gcagcatttg tatttcctga tgaagaacgc tgctggcctc
     1861 ctcctgaacg acgtctacga tttgcgttgc tgccttgttg acgcttgtct cctcctgagc
     1921 ttttggacga tgcgtgttta ccttgatttt gagcacgatg atgtttttta ccgggttctt
     1981 gagttacggt gtgggcaact gaatgaccac caaataaact agtccataat cgtttaataa
     2041 aactggtttg agggtgtttg atgaccctgt gttcggcaaa tgatttcaca gcaggttcat
     2101 catgtgacac gggttcttta tcactgctgg gaacatgtac ttcaggttgc tgaatcaaag
     2161 agtaacttgg ttttttagat ttgcctacgt tgtcttcttt caggcgagta atcgtatatt
     2221 gtggagggtg catataagga ttcgcaataa caacaacact gacaccatgc cttttttcaa
     2281 tgtccctgat aaaattacgt ttttcattca taatgaatgt agccatttct ggtggcaatt
     2341 gcacttgaat ttcagctgtt ttttccttga gcgcctcttc ttcgataagg cgggtaattg
     2401 ataagccatg agactgtata ctgcgtacag ttcctctacc ttcacaacgt ggacaaattt
     2461 cctgggcagt ttctcctaat gataatcgga ggcgttgcct tgacatttca agaaggccaa
     2521 agcgtgaaat tcgccctact tgaattctgg ccctatcagc ctgcagtgct tctttgagtc
     2581 gattttctac ctctctttga tttttactag aactcatgtc aataaaatca ataactacca
     2641 aaccacctaa atcacgcagg cgaagctggc gagcaatttc atcagctgct tcaaggttgg
     2701 tatttaatgc agtcgcttca atgtcggcac cgcctgtagc cttggctgag ttaatatcaa
     2761 ttgataccag agcttcagtt ctatctatga ccaaggcacc tccagaagga agcatgacct
     2821 ggcgctgata agctgtctca atttggcttt caatctgata gaaattaaaa agagggatgc
     2881 tgctgttata gagttttaga ttaggtaaaa attctggttt tacgcgttca atgtattgtt
     2941 ttgctttgat ataggatatt tgatcatcaa taataatttc actgatggat tttcgcaaat
     3001 tgtcacgaat ggaacgaata atgacatcgc cctcttgatg aatcaggcaa ggtgccagtt
     3061 ctgaattata agcttccttg atggattgcc actgattgca aagcatgttt aagtcatctt
     3121 gcagttcttc cagacttttt ccaacacctg cagtgcgaat aataaggccc atgtcttcag
     3181 ggagtgttaa agcatttaat gtttcgcgta attcatcacg ctcatcacct tcaatacgtc
     3241 ttgatattcc gcccgaatga gggttattgg gcattaaaac caggtagcaa cctgccaggg
     3301 taataaaagt tgtcagtgct gctcctttat tccctctttc ttctttatcc acttggataa
     3361 gtaattcttg accttcacgg atgaggctgg taattggagg tttctcatct ccaaactctt
     3421 ccggattctt gcttaagtat tcaggcgcta tttcttttag gggtaagaaa ccttggcgtt
     3481 tggaaccata ttcaacgaaa acagcatcaa ggctgggttc tcttcttgtt acaatggctt
     3541 tataaatatt accttttttc tttatttctc ccgggcattc aatgtccaga tcaaataatt
     3601 gattgttttt aattagtgca acacgaattt cttctgtttg cattgcattg attagcattt
     3661 tttccatgta taaccccata tttagggcgc atgcatttac atcgagatag tgtaaggctc
     3721 agtatagccg tatgatcatt tctacagttt tcttgccatg aagttaattt tccgggtccc
     3781 atatcttgca ttcgtcttga atctgcagag agagggagtc agaaaattaa tatcctggtc
     3841 tctataattc tggtgaaatg ataacagcct attccctaat tgctcaattt tgtttttgaa
     3901 aaacaatgtt attaagctgg cagggtgagg aactttaagc tgacccatga ccttgtggac
     3961 agaccgtacg catgttacct cagtagttaa aggtgcacac tgtatgatgt accgtttaca
     4021 gattaagtgg gttggaaaaa aaaggccttt catcaggcgt gcaaaagccc ggcaataatt
     4081 cgtaattggt ataaagcatg tctggcatgc ataggtatct gtcgaaataa ttatcaattt
     4141 tactctggta ttgggtcgct tccttatatc ttcgacttaa atggaagcgc attttgtttt
     4201 ttcttccaag catctactca ggcgtattac gatgaaaaaa cagaggtgat tctttaactt
     4261 gtggttcaag ttcttattga attcaacctg ttttatattc gcttgagcag ctgcttcttt
     4321 agtttgattt gctatcagat taactaaatt tatgctattc tgttaatttt tcattcttca
     4381 ttaatgat
//
LOCUS       DACVWI010000221         4386 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.222, whole genome shotgun sequence.
ACCESSION   DACVWI010000221 DACVWI010000000
VERSION     DACVWI010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4386
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.222"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            172..420
                     /locus_tag="JBH85_13270"
     CDS             172..420
                     /locus_tag="JBH85_13270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAU0947172.1"
                     /translation="MPKTHVFGALSEFERNLIKERTSAGLEAARARGRQGGQPEKLTS
                     EQKELVKTLYATKKHSIQSICKMVGIGKTTLYKYINQK"
     gene            639..1046
                     /locus_tag="JBH85_13275"
     CDS             639..1046
                     /locus_tag="JBH85_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947173.1"
                     /translation="MSKSNNINIFVKGKKNQFVFSISSPDFEVLYQSQSKLDVGEDIS
                     PIKADILAIKEGLNFVKENRGNGIIPSTPIISLFTCYENNYHICNGRKNADKFRDELK
                     IINKIKSDLARWQGDHDHVKILWIPAGFKNLMD"
     gene            1268..2350
                     /locus_tag="JBH85_13280"
     CDS             1268..2350
                     /locus_tag="JBH85_13280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4917 family protein"
                     /protein_id="HAU0947174.1"
                     /translation="MNITHIMDFSEVLNETQRSPQKKPALLLGNGFSMAFNKSIFSYK
                     SLYEQALEKGLVQKLSSSIPELFESVNTFDFEYIMQVLKYFGIAGAAYSVDENVLMQA
                     KQDEALLKNMLVEAITNNHPDNPNSITLPQYKSCLEFLSNFKSIYSLNYDLLLYWVVM
                     KYLEELGFRDGFCDGNADEEDYYQDEYVVWPTTQSSSAEIYFLHGALHLFDAGHEIRK
                     FCWSRTGIALKEQILQALGQGMFPLFVSEGDAGAKLKKILHNGYLLKGLRSLTQLNGS
                     VVAYGVSFKKNDQHIIDAIIDSTISHLYVSIFGDPTLEPNKDMINMLSTMVEHRNHLI
                     DTKKRKNNLEVHFYNATSAKIWDKHS"
     gene            2508..3116
                     /locus_tag="JBH85_13285"
     CDS             2508..3116
                     /locus_tag="JBH85_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947175.1"
                     /translation="MKVKRNIIKELRVSRGWTQEHLAHLCDCSVRTIARAEKDGVNSM
                     ETITALAAVFGVEASQLMGMDKIEQLQQKTDEGERYLIRLHSGKMIVESFIESLAYKI
                     DYEIPRNSKDADLISSVIQEIKDWGEIWGDLDVGEQIRASYRLNEIISEIEENGLVLF
                     GLRTREKLNIFSQEIEGFLCNLFISYKDNERIVILGSDSTEE"
     gene            complement(3164..4272)
                     /locus_tag="JBH85_13290"
                     /pseudo
     CDS             complement(3164..4272)
                     /locus_tag="JBH85_13290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611501.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element ISLpn8 family transposase"
BASE COUNT         1449 a          743 c          830 g         1364 t
ORIGIN      
        1 tgcattatat atcctatctt tggggaaata attttaagct agatgacgta tggaaaatgt
       61 tcaatcaaag aaaagtttct ttaccaaaaa ttcatataag gtgggaacgt cattaataag
      121 tgtaaaaggc ttgtatagga atcctgaaat aaggtaggca atatttaaaa tatcccgaaa
      181 acccatgttt ttggggcact ttcagagttc gaacgtaact taatcaagga gcgaacctca
      241 gctggtctcg aagccgccag agctagagga cggcagggag ggcagccaga aaagcttaca
      301 agcgaacaaa aagagctagt taaaactctt tatgccacta aaaagcattc tatccaatca
      361 atttgtaaga tggttggcat tggaaaaact accctttata aatatataaa ccaaaagtaa
      421 aaaatacaat gatggttaaa ttcgcttagc attaatttct taaaatgcaa tgaaatttac
      481 aatataatta caaaaaactt gactttggtc gacttttaag ctattattag aatgaaatcc
      541 aaggaaattt atggattatc caaccagcag cctttgtggg tttatattgc agataaggaa
      601 aaaacaaccc caataaggct acattattga ggaacagcat gtccaaatct aacaatataa
      661 atatctttgt aaagggtaag aaaaatcaat ttgttttctc catttcgtct cccgattttg
      721 aagttctata tcagagtcag tctaaattag atgttggtga ggatatatca ccgattaagg
      781 cagatattct agcaataaaa gagggattaa attttgtgaa ggaaaatagg ggaaatggta
      841 tcattcctag tacacctata atctcccttt ttacttgtta tgaaaataat tatcatattt
      901 gcaatggtag aaaaaatgca gataagtttc gtgatgagct taagattata aataaaataa
      961 agagtgatct tgctagatgg cagggagatc acgatcacgt caaaatccta tggatcccag
     1021 caggatttaa gaacttgatg gattaatatt cacgtcatgg gagcatgtct tatcttttgc
     1081 ctgaatgatt taatcagtga atagttaata attttgccag aaatgagtct tataaggcaa
     1141 gagacaagac gaccccaaac tccaatgcaa catctttttt ttaaatttat gcaagaacac
     1201 tatgtaagct aatagcagtc tagtcttaag cccccacgtc aaggggttga tttaatgagg
     1261 aaccaaaatg aatatcacgc atattatgga cttttcagaa gtactcaatg aaacacaaag
     1321 atcaccacaa aaaaaacctg cccttcttct aggtaacggt ttcagcatgg catttaataa
     1381 aagtattttt tcttataaaa gcctatatga gcaggcttta gaaaagggac ttgtgcaaaa
     1441 attatcctct tcaattcctg aattgtttga atcagtaaat accttcgatt ttgaatatat
     1501 tatgcaagtg ctgaagtatt ttggcattgc aggcgctgct tatagtgttg atgaaaatgt
     1561 cttaatgcag gcaaaacaag atgaagctct tttaaaaaac atgttggtag aggcaattac
     1621 taacaatcat ccagataatc cgaatagtat tactttgcct caatataaat cctgtcttga
     1681 atttctttcc aattttaaat ctatatattc gttaaattac gatttattac tatattgggt
     1741 agttatgaaa tatcttgaag agctaggttt tagggatgga ttttgtgatg gaaatgcaga
     1801 tgaagaagat tattatcaag atgaatatgt tgtctggcct actactcaat catctagcgc
     1861 ggagatttat tttctacatg gtgccttgca tttgtttgat gcaggacatg agataagaaa
     1921 gttttgttgg tctagaactg gcatagcatt gaaagagcaa attcttcaag ctcttggaca
     1981 aggaatgttc cctctatttg tatcagaagg cgatgcggga gccaaactaa aaaaaatact
     2041 tcacaatgga tatttgctta aaggtttaag gagtcttacg cagttgaacg gctcagtagt
     2101 agcttatggt gtaagcttta aaaaaaatga tcaacatata attgacgcta taattgatag
     2161 cacaatttca catctgtatg tcagtatatt tggtgatcca acattagaac ccaataaaga
     2221 tatgataaat atgctctcga ctatggtgga gcatagaaat catctgattg atacaaagaa
     2281 aagaaaaaat aacttagaag ttcattttta taatgcaact agtgcaaaaa tttgggataa
     2341 acattcttga tttaaattag taaacaaaac cccccaataa tttactctaa gacatgaact
     2401 atttttttta tttgcctact gctgtcttat tactgtcagt aaactgtcag atagttagga
     2461 ctattatttt gatatagtta ccttgttgtt ataaacagga attcaaaatg aaagttaaaa
     2521 gaaatattat taaggaactg cgagttagcc ggggttggac tcaagaacat ttggcacatt
     2581 tatgcgattg tagtgtaaga actattgcaa gagcagaaaa ggacggagta aatagtatgg
     2641 aaactattac agctcttgct gcagtttttg gagttgaggc tagtcaacta atgggaatgg
     2701 ataaaataga gcagttgcaa caaaaaactg atgaaggaga gaggtattta attaggctgc
     2761 attctggaaa aatgatcgtt gaatcattta ttgaatcatt agcttataaa atcgattatg
     2821 aaatacccag aaattcaaaa gatgctgatc ttatttcaag tgttatacaa gagatcaagg
     2881 attggggtga aatctggggg gatttagatg ttggtgaaca aattagggca tcatatcgat
     2941 tgaatgaaat tatatcagaa attgaagaaa acggcttggt actatttggt ttgagaacta
     3001 gagagaagct aaatattttt tctcaggaaa tagagggttt tctatgtaat ctatttatca
     3061 gttataaaga taatgagcga atagtaattc taggctctga tagtactgag gaataagcta
     3121 ttttgaattt gttgcataaa ttgtagctgt aaacccccca tatttagtgg catcctaaat
     3181 tagagttcat tggctgattt tttgccagat attcccacgg cgttaaatca tttagtgaat
     3241 catggggtct ttcgtcgttg tactccttta tccagttttc tgttaactct cttacttcgt
     3301 gtaaattttt gaacgcatac atatccagta tttctgtgcg ataagttcta ttgaatcgct
     3361 caataaatga attttgtgtt ggcttggctg gcttgataaa ttccaactgc accttatttt
     3421 tttctgccca atcagctagg gctctggaaa taaattcagg accattatcc atacgtagtt
     3481 tggcagggag accacgccag gcaacaacac gttctaatac gcgaattact cgctgtgcgg
     3541 gcaggttcaa atctatctcg atcgctaaca cttcacgatt gaaatcatcc actatgttaa
     3601 atgttcggaa gcgtcgacca cacatcaatg catcgcacat aaagtccatt gaccaacact
     3661 ggttaatgga cgctggcaca ctcagaggtc caggtgagcg attgggtaac cgcttttttc
     3721 ccttgcgacg catattgagc ttaagctcac aatacacacg gtaaacccgt ttatgattcc
     3781 atttgtgccc ctggcgccgt aagaccttaa gcaatttact gaagccatac gctgggtaac
     3841 gttcagatga ttcttgtaat gccacaatga cactttcatc agaccgacta tccggcttat
     3901 agcgataaac cgagtcgttg atacccacaa ccttgcaagc gcggcgtaaa ctcacagcat
     3961 gagcattgac tgcataatca accaactccc gacgcacagt tggcttcaca gctttttttc
     4021 aacaatatcc ttcaggattt tgtgatcaag actcagttca gcgtacatct gctttagacg
     4081 acggttctct tcttcaaggt ctttcagacg ctttatgtct gatgactcca tgcctccata
     4141 ttttgctttc cagttgtaat atgttgcgtc agaaatacca tattcacgac aaatttcttt
     4201 aaccagtctg cctgcttcaa cctcttttag aattttgaca atctgagttt ctgtataacg
     4261 cgattttttc atcttcgttc tccttagtgg tagtttaact tggagaactc taatcaggaa
     4321 tacaactatt ttaggggatg gttacaaaga caactatata aatattatca atcacaaacg
     4381 tgcaat
//
LOCUS       DACVWI010000222         4363 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.223, whole genome shotgun sequence.
ACCESSION   DACVWI010000222 DACVWI010000000
VERSION     DACVWI010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4363
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.223"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..855)
                     /locus_tag="JBH85_13295"
     CDS             complement(<1..855)
                     /locus_tag="JBH85_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019235297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HAU0947176.1"
                     /translation="MERYKRQIAVIGEQSQKILSNARIMIVGLGGIGCPVAQYLAAAG
                     VGKLILVDNDKVDLSNLHRQILFNEADVGDYKAEKAKVALSQVNCNIVLEAYTNKFDV
                     DFGYSSVSDVDLIIDGTDNFETRYLINDICVLQEKVFISCSIFVNVIQLVLFDTKHCC
                     YRCLYPNPPPTGAIPNCSEAGVLGTVTGIAGTMAANLALNYLLKVEDGEAPQVRIVDA
                     KNFSISSLTIKQNNECIACKQKKINFDYLQTSSADYGISIEDLDRNKHFLVDIRQKEE
                     REIIKLDDD"
     gene            complement(860..1111)
                     /locus_tag="JBH85_13300"
     CDS             complement(860..1111)
                     /locus_tag="JBH85_13300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004450452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HAU0947177.1"
                     /translation="MHEYQLIEFSSSKKEIQLVSNQSNLQQVLLEFYKEKFEKMFDED
                     GCSKGYISVFVNSKQITSVKEIALNPNDEICIVTSISGG"
     gene            complement(1259..2422)
                     /locus_tag="JBH85_13305"
     CDS             complement(1259..2422)
                     /locus_tag="JBH85_13305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HAU0947178.1"
                     /translation="MRITTLLCIDPLQDYELIDCEMLLQLGITPFFLIKDASKAVKDR
                     ENVLVNSFSYEDILAICDSIRPKYIVCFSEDMFVDIAKIREHLKIAGMSSNTAMLLSH
                     KDLMYQKLDGSFPFPKTTTLIESPNLKSIQEKIGVQEIFVKPINSSGSYETYHIKTER
                     EFSNFLANKKEDEENYIAQAYVADDLYHSELVVFDGNILFVEARKYTHPNHLMVSKNF
                     PIFSLNILEAPQRQSIIDASVKVSQLLGFHNGVLHTEFFMNEDGYIQFIETNARPPGI
                     GLNKLYQRKYSISLETILCCIVCGVEPPSMVENKSHFVCGYFPTKMGVIKKINKPELH
                     VQNEWTFFVKPDDTSEQMAHMSKSAMVLCWDDSVTEINKTGNFLAEQDIVEVY"
     gene            complement(2394..3656)
                     /locus_tag="JBH85_13310"
     CDS             complement(2394..3656)
                     /locus_tag="JBH85_13310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947179.1"
                     /translation="MSELSWDRVKTDIARVNKRLYEILETIDGIQNMLFTVLEYQYGQ
                     IIADEDYFYLPNTCGKLSSVPFSMVLEKNLEMFIEFKGKSSTHQVYKEGDFLSVSSLY
                     NASNTHHPTDILQISSGARNTFLLCPVADARPHASLEKYFKADIPVPDELGNHYLTFK
                     SLCEAANCKWRSKLLVFPSEIVTLIKENKLPTLLSLVMEFDSNQTGYYANLPFYNYLM
                     AYVRANNPEISQNEFTNNAISQLITIGTGQVPGYGLAVGDDLLPLDFIVETYRDIYKS
                     KYTPFVMEPVHFDKNKNNPVFYSILKEEMAFKPTSFSNKPQRCELIYDTYFQYADHIK
                     KLGHLKNTPFFESATMLDLTLFHEKNNQVTNNLFKLPRETIFSYDPRFLEVTNKLGYS
                     VDQFPSKTTFLVGCFGIKYNENNDTVMH"
     gene            3840..4034
                     /locus_tag="JBH85_13315"
     CDS             3840..4034
                     /locus_tag="JBH85_13315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003637164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947180.1"
                     /translation="MVIDHVDSQIIKMIINGSQVTEIAEDTKKSKRYILYRLSDLKTS
                     FNCKTTPQLIYMLATSGLIK"
     gene            4055..>4363
                     /locus_tag="JBH85_13320"
     CDS             4055..>4363
                     /locus_tag="JBH85_13320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003637165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HAU0947181.1"
                     /translation="MNNSIYYHRFNKLLSLTNCPKEALLLDKIIFHYQGTLLKRENKL
                     WFTKKIPDLAAELGFSESRIYIYLKNLEEEGLIIRKRFKYYGVPRSFIAITETLQSKL
                     Q"
BASE COUNT         1471 a          793 c          654 g         1445 t
ORIGIN      
        1 atcatcatct aactttataa tctctctctc ctctttttgc cttatatcaa ccagaaaatg
       61 cttgtttcta tcaagatctt ctatggagat cccataatca gcactactgg tttgcaaata
      121 atcaaagttg attttctttt gtttgcatgc aatgcattca ttattttgct ttatagtcaa
      181 agaggagata ctaaagtttt ttgcatctac tattcgtact tgtggtgctt ccccatcctc
      241 taccttaagt aaataattta gagcaaggtt agcggccatg gttccggcta ttcctgttac
      301 tgtgcctaaa acacccgctt cggaacagtt aggaattgca cctgtaggag gcgggttagg
      361 atataaacaa cgataacagc aatgtttcgt atcaaataaa acaagctgaa tgacatttac
      421 aaaaatacta cagcttataa atactttttc ttgtaagaca caaatatcgt taataaggta
      481 tctcgtttca aaattgtctg ttccatcgat gatcagatcg acatctgaga ctgatgagta
      541 accgaaatct acatcaaatt tattggtgta tgcttcaaga actatattgc aattaacttg
      601 acttagagca actttcgctt tctcagcttt ataatctccg acatctgcct cattaaataa
      661 aatctgtcta tgtaaattag aaagatctac tttatcatta tcgactagga ttaactttcc
      721 aacaccagca gcggcaagat attgagcaac aggacatccg ataccgccta gaccaacgat
      781 cataattctt gcattactta gtattttttg actttgctct ccgatcactg cgatctggcg
      841 tttataccgt tccattcctc tacccccctg atatcgaagt tacaatacag atttcatcat
      901 tagggttaag tgcaatttct ttaactgatg taatttgttt tgagttaaca aatacagaaa
      961 tgtatccctt tgaacaaccg tcttcatcaa acatcttttc aaacttctct ttataaaatt
     1021 ctaataatac ttgttgcaag tttgattgat tagaaaccaa ttggatttct tttttggacg
     1081 aactaaactc tattaattgg tattcatgca ttcttataac ctgtagattt ttatataaac
     1141 gatatatata atttatttat atttttaaca attgtggtga aatatgaacg aacaactgtt
     1201 taaagatctt actaaaaact catcagcagc caaaatgagg ctataatcta tttttaattc
     1261 aataaacctc tacaatatct tgctctgcaa gaaagttacc agtcttattt atttcagtta
     1321 cagagtcatc ccaacaaaga accatcgctg acttagacat atgtgccatt tgttcgcttg
     1381 tatcatcagg cttaacaaaa aaagtccatt cattttgaac atgaagttca ggtttgttta
     1441 tcttttttat aacccccatc tttgtaggaa agtaaccaca tacgaagtga cttttatttt
     1501 ctaccatgct aggaggttca actccacaaa caatacaaca taaaattgtt tcaaggctta
     1561 tggaatattt tctctggtac aacttattta aaccaatacc tggtggtcta gcattggttt
     1621 cgataaattg aatataacca tcctcattca tgaagaattc agtatgaagt accccattat
     1681 ggaatcccaa taactggctc accttaactg aagcatcaat aattgattgt cgttgaggcg
     1741 cttctaaaat attcaaacta aatataggaa aatttttact aaccattaaa tggtttggat
     1801 gggtatattt cctggcttct acaaacaaaa tgttcccatc aaaaactacc aactccgaat
     1861 gatataaatc atctgccaca taagcttgag cgatatagtt ttcctcatcc tctttcttat
     1921 tggctaaaaa attagaaaac tctctctcag tcttaatatg ataggtctca taggaaccag
     1981 aggaattaat aggtttaaca aaaatctctt gaacacctat cttttcttga attgatttta
     2041 aatttggaga ttcaatcaat gtggttgttt taggaaatgg aaatgaacca tccaactttt
     2101 gatacataag atccttgtgg cttaatagca ttgccgtatt cgaactcata ccagcaatct
     2161 ttagatgttc tcggattttt gctatatcca cgaacatatc ctcagaaaaa cacacgatat
     2221 actttggacg aattgaatca caaattgcta ggatatcttc atatgaaaat gagtttacta
     2281 atacattttc ccgatcctta acagccttag atgcatcttt aatcaaaaaa aagggagtaa
     2341 tgcccaattg aagaagcatc tcacaatcga ttaattcata gtcctgaaga ggatcaatgc
     2401 ataacagtgt cgttattctc attatattta ataccaaaac atcctactaa aaacgttgtt
     2461 ttcgaaggga attgatcaac tgaataccca agtttatttg ttacttccaa aaatcgagga
     2521 tcgtaagaaa aaatcgtctc cctaggtagt ttaaataagt tattagtcac ttgattgttc
     2581 ttttcatgaa aaagtgttaa atcgagcatt gttgcacttt caaaaaatgg cgtattctta
     2641 agatggccta atttctttat atgatcagcg tactgaaaat aagtatcgta tattaattca
     2701 caacgctgtg gtttatttga aaatgaggta ggcttaaaag ccatctcttc tttgaggatc
     2761 gaataaaaaa cagggttgtt tttatttttg tcaaaatgaa caggctccat aacaaaagga
     2821 gtgtatttgg atttatatat atcgcgatac gtctcaacaa taaaatctaa gggcaataaa
     2881 tcatccccta cggctaaacc gtaaccggga acttgtcccg tacctatagt aatcaattga
     2941 ctaatggcgt tattagtaaa ttcattttga gatatttcag gattattggc tcggacgtag
     3001 gccattagat aattataaaa aggtaagttt gcataataac ctgtctgatt agaatcaaat
     3061 tccatgacta aactcaaaag agttggcaat ttattctctt taattaacgt tacaatttca
     3121 gaaggaaaca ccaataattt tgaacgccac ttacagttgg ctgcctcaca taaactctta
     3181 aaggttaaat aatgatttcc aagctcatct ggcacaggaa tgtcagcctt aaaatatttt
     3241 tctaaactgg catgtggcct tgcgtctgcc acaggacaaa gtaaaaaggt atttcttgca
     3301 cctgatgata tttgcagtat atctgtggga tgatgagtat ttgaagcatt ataaagtgaa
     3361 ctaacgctta aaaaatcccc ttctttatag acttggtgtg tgcttgactt ccctttaaat
     3421 tcaataaaca tttcaagatt tttttctaaa accattgaaa atggaaccga ggatagcttt
     3481 ccacaagtat ttggcaaata aaaatagtcc tcatccgcaa tgatttgtcc atactgatat
     3541 tcaaggacag taaaaagcat attttgaatg ccatctatgg tttctaatat ttcatagagg
     3601 cgtttattaa cacgagctat gtccgttttt accctatccc aagataattc actcatatga
     3661 catcaatcta aaatcctatt aattaaccga atcatacaag agaacattag tgtattcaat
     3721 gaacctgtat ttcatgcaat aaaatttatt gctaaaaata ataatatttc ttgcttaaat
     3781 gcatttcaag ttataaatta tatcacttgg gatgcattta aataaaaatg gagcttttaa
     3841 tggtaattga ccatgttgat agccagataa taaaaatgat aataaacggt agccaagtta
     3901 ccgaaatcgc tgaagatacc aaaaaatcaa aaagatacat cctctataga cttagtgact
     3961 taaagactag ctttaattgc aaaaccacgc ctcagctaat ctatatgttg gccacgtcag
     4021 ggttaattaa gtaatttcac cacatggatg ttttatgaat aattcaattt actatcatag
     4081 atttaacaag cttctttcat taactaactg ccctaaagaa gctctgcttt tagataaaat
     4141 catatttcat tatcaaggca ctcttttaaa acgcgaaaat aaattatggt ttacaaaaaa
     4201 aattcctgat cttgctgcgg aactcggttt tagtgaaagc aggatttata tctacctaaa
     4261 aaatttagaa gaagaaggac tgattatccg aaaaagattt aaatattacg gtgtacctcg
     4321 atcttttata gcaattacag aaacacttca aagcaaatta caa
//
LOCUS       DACVWI010000223         4324 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.224, whole genome shotgun sequence.
ACCESSION   DACVWI010000223 DACVWI010000000
VERSION     DACVWI010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.224"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            10..210
                     /locus_tag="JBH85_13325"
     CDS             10..210
                     /locus_tag="JBH85_13325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007278859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947182.1"
                     /translation="MHYYRKKSGLSQQELAHLAGVGKTVIYDIEKGKESVRLNTLLKV
                     LDVLNIQMKFETPFPQTTDNNS"
     gene            207..516
                     /locus_tag="JBH85_13330"
                     /pseudo
     CDS             207..516
                     /locus_tag="JBH85_13330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096377.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="toxin HipA"
     gene            513..1431
                     /locus_tag="JBH85_13335"
                     /pseudo
     CDS             513..1431
                     /locus_tag="JBH85_13335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096378.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
     gene            1560..4127
                     /gene="mgtA"
                     /locus_tag="JBH85_13340"
     CDS             1560..4127
                     /gene="mgtA"
                     /locus_tag="JBH85_13340"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HAU0947183.1"
                     /translation="MKINLDLNDLSTYDQNLLLNELNSSLEGLNNFQAQKRLTQYGTN
                     EILRKPYHLIILEAISHSINPLVAILFFAALISAFTGNVVNAAIIISIIIISIGLDYF
                     QSHRALVAIKMLQKKIATTVTVLRENQWLEIPAKELVPGDLFRLSAGDMVPADSILLK
                     SKDLHIHQAALTGESMPVEKEAIPLKTKPKNPLDALNIVFSGSSVIGGSATALAINTG
                     SNSLFGHIAESLKKKPPHTEFEQGMMRFSTFIMKMVFLLVIFVFSINIYMHRPLLDSL
                     LFAVALAVGLTPELLPMITTVTLASGAVRMSKKKVIIKNLSAVQNFGSIDILCSDKTG
                     TLTSGEMNLTKYLDFSGKQSEFVMLLAYLNSLYITEIKSPFNIAVLKKARLNPLDLAI
                     LKHDHPDIQPYHKVDEIPFDFERRRSSVIVSKNENHLFICKGAPENIMSVCSYYDFAG
                     ERELFTEKEQKQCELLFQSLSSEGYRVLAIAYKLMDRQLKYTQSDEKEMIFAGFLAFT
                     DPLLEDIPKVIKDLRQEGINIKILSGDNLIVTQHICQTVGMDTSRILTGEEISKISDD
                     ALPSLAEGIDIYARINPMQKQRIISALKKRGHVVGYLGDGINDVPSLHHADVGISVAS
                     AVDIAREAADIVLLEHHLKVLLNGIIEGRKSFRNVMKYLMMGTSSNFGNMISMAVAVL
                     FLPFLPMLPRQILLNNLLYDISQITIPTDHVDPSSIHQYKRLDINIIRQFMFYVGPIS
                     SVFDFLTFFVMLKIFSANEALFQTGWFVESLATQTLVIFIIRTAKKPWQSMPSLPLTA
                     TVLLIVMVGIWLPFSPFSGLFGFVPLPPLYFLFLVTATFTYLFLVELIKKKIMRKLY"
BASE COUNT         1461 a          741 c          755 g         1367 t
ORIGIN      
        1 gccaatttaa tccattacta ccgtaaaaaa agcggcttat cacaacaaga gttagcccac
       61 ttagcaggtg ttggcaagac agttatatat gatattgaaa aagggaaaga atcggtgcgg
      121 ttgaacacct tgctaaaagt attagatgtt ttgaatatcc aaatgaaatt tgaaacgcct
      181 tttcctcaaa caacggataa taattcatga gaaaagcata cgtatcagtg aatggcatca
      241 aggctggaat attagaagaa ttacaaagtg gaaaatatca attcagttac tttgataatt
      301 atcacggggc acctgtttct ctcacaatgc cgttaaccaa taaggtctat gattttgatg
      361 tatttccccc ttttttttga agggttactt cctgaaggca ttatgcttga agcactatta
      421 cgcaaatata aaatcgataa aaatgattat tttggccaat tgataatagt tggccaagat
      481 gtcgtaggcg cagtgactat tgaggaaata agatgaaacg ctgccccatt acatatgaaa
      541 aaatcagtga ccaagaaaac tattcacaac gtggattgcg cttgctttct cctcaattaa
      601 aaaacctgag cccattagat ttaagtgctg atgagcagcg tcaggaagca attgctcgag
      661 taggaaagat gtctattcaa ggtgtccaaa agaaactaag cacaaaacta aagattaaag
      721 agggatgttt tgaaatcgtg gatcaaaatg gtgactatat tttaaaacca caaagtgata
      781 tttatccaga attgccggaa aacgaagcca ttaccatgac ccttgcaaag accattggcc
      841 ttgaatggtt tagtgtactc taaagataac agtttgactt acttcattaa acggtttgat
      901 agaataggcc ataataaaaa attagcttta gaagattttg cacagctatc gggtgaagat
      961 cggcatacaa aatataaaag ttctatggaa aacgtgcttg caatcataga acagttttgt
     1021 acattcccca aaattgaatt cgtgaaatta tttaagttga cattgtttaa cttcctggtc
     1081 ggcaatgaag acatgcactt aaaaaatttt tccctaatta ccagagatag aaaaatttcc
     1141 atatcgccag cctatgattt acttaacact attgctcaaa aaaatacaaa agaagaaatc
     1201 gctttaccct taaaggggaa aaaaaataat ttgataacga atgattttct taaatacttt
     1261 gccgttgaaa aattaggatt aaatcagaag gtcatagatg ggatcgtaca agagttccat
     1321 caaataataa ctgaatggcg aaagctggtt ggcttcagtt ttttatctca acagatgcag
     1381 gaaaaatatc tccaattgct agaacaacga tgcaagcgat taaatttttg attaactgat
     1441 atgatgtctc ttctttccca aacatcaatt taattttgtt tcctataatt gtatttagac
     1501 tttcttgatc aattctctgc tttttatttt ttacttttaa gactaatgga aaaaagtaaa
     1561 tgaaaatcaa cttagactta aatgacttat caacttatga ccagaaccta cttttaaacg
     1621 agttaaatag ttcattggaa ggactaaaca atttccaagc gcaaaaacgg ttaactcaat
     1681 atggtacgaa tgaaattcta agaaaaccct atcatctgat tatccttgaa gcaatctcgc
     1741 actcaattaa tcctttagtt gccatcttat tttttgctgc tttaatttca gcatttacgg
     1801 gaaatgtagt taatgcagcg ataataatta gcatcatcat cattagcatt ggcctggatt
     1861 attttcaaag tcatcgcgct cttgttgcaa ttaaaatgtt acaaaagaaa atagcaacta
     1921 cagtaacagt cttacgtgaa aatcaatggc tggagatacc tgcaaaagaa ttagttcctg
     1981 gtgatttatt tcgattatcc gctggtgata tggtgcctgc agactcaata ctattaaaat
     2041 caaaagacct tcatattcac caagctgcac ttaccgggga atcaatgcca gttgaaaagg
     2101 aagcaatccc tctaaagacc aaacctaaaa atcctcttga tgcactcaac atcgtttttt
     2161 caggctcatc tgttattggg ggtagcgcaa cagcactagc aattaataca ggaagtaata
     2221 gtttatttgg tcacatcgca gaaagcttaa agaagaaacc accacataca gaatttgaac
     2281 aaggtatgat gcggttcagc acttttatca tgaaaatggt atttctgtta gtaatctttg
     2341 tattttcaat caacatatac atgcacagac cattgcttga ttccttgttg tttgctgtag
     2401 cgctagccgt aggtcttact cctgaattac ttcccatgat cacgacagtg accttagcct
     2461 ctggtgccgt tcgcatgtca aagaaaaagg taattatcaa aaatttatca gcggtccaaa
     2521 acttcgggag cattgatatt ttatgtagtg ataaaacagg caccctgaca agcggagaaa
     2581 tgaatttaac aaaatacctg gatttttcag gaaagcaatc ggaatttgta atgttattag
     2641 cctacttaaa cagcttatac ataacagaaa ttaagagtcc ctttaatatt gcagtattaa
     2701 aaaaagcaag attaaatcca ttagatttag caatcttaaa acatgatcat cccgatattc
     2761 aaccatacca taaagtagat gaaattcctt ttgattttga gcgcagacgt tcaagtgtca
     2821 ttgttagcaa aaatgagaat cacctgttca tttgcaaagg cgcacctgaa aacattatga
     2881 gcgtatgctc ctattatgat tttgcaggcg aaagagaact gtttaccgaa aaagaacaaa
     2941 aacaatgtga attgcttttc caatcgttaa gcagcgaagg ttatcgagtc ttagctattg
     3001 cctacaaact aatggatcga caacttaaat atactcaaag tgatgaaaaa gaaatgatct
     3061 ttgcgggttt tttagccttt actgatcccc tacttgaaga tatcccaaaa gtaattaaag
     3121 acctgcgtca ggaaggaatc aatataaaaa tcttatctgg tgataattta atagttactc
     3181 aacacatctg tcaaacagtt ggtatggata caagccgtat tttgacaggg gaagaaattt
     3241 caaaaatttc ggatgacgca cttccctcac tagcagaagg aattgatatt tatgctcgta
     3301 taaaccctat gcaaaaacag aggataatct ctgctttaaa aaaaagaggg catgtcgtgg
     3361 gatatcttgg agatgggata aatgatgtac catctttaca tcacgctgat gtgggaattt
     3421 cagttgcttc tgctgttgat attgctcgtg aagcagcaga tattgttttg ctggaacatc
     3481 atctaaaagt attattaaac ggaatcatcg aaggtcgtaa gtcgtttaga aacgtcatga
     3541 aatatctcat gatgggtaca agctcaaatt ttggcaatat gattagtatg gcagttgcag
     3601 tcctgttttt acctttttta cctatgctac ccagacaaat cctattaaac aatttacttt
     3661 atgacatctc acaaataacg atacccactg atcatgtaga tccaagctcg atacatcaat
     3721 ataagagatt agatattaat ataattcgcc aatttatgtt ctacgttggg cctattagct
     3781 ctgtatttga ttttttaaca ttttttgtca tgttaaaaat attttctgct aatgaagctt
     3841 tgttccaaac aggttggttt gtcgaatctt tggcaacaca aactttagtt atttttatta
     3901 ttcgcacggc caaaaaacct tggcaaagta tgccaagtct ccctttaaca gctactgttc
     3961 tactgatagt tatggtggga atatggttac catttagtcc attttctgga ttatttggat
     4021 ttgtgccctt gccgccattg tattttcttt ttttggttac agcgactttt acttacttat
     4081 ttctggttga attaattaaa aaaaagataa tgcggaaatt atattagtca aacaacatta
     4141 tcattcattt gaaggctcaa aatgattaaa tggatttctg ggtttataat tttggttgta
     4201 cttattatta tcattggtca ttttagtcaa ctgcgagttt ttcttggttt aattgagcaa
     4261 aaggataaaa aatatatttc atggccattt gttttactat ttctaattta gaaaccatta
     4321 tttt
//
LOCUS       DACVWI010000224         4310 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.225, whole genome shotgun sequence.
ACCESSION   DACVWI010000224 DACVWI010000000
VERSION     DACVWI010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4310
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.225"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..488
                     /locus_tag="JBH85_13345"
     CDS             <1..488
                     /locus_tag="JBH85_13345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947184.1"
                     /translation="ELLEKSKINPAIAEYITGTSSGVMMVDSYEKLLELSKINYAVAD
                     NMTQTQLGLDLIDSYEKFLEITKINAKVAFNFQILNYQRYVKLVDSYQQSSQAKSLSD
                     LNTSANSQLFFKKRDSTGQDRASITTGQARVAHDTVGLGLKWNEAIQNTISENMMNQR
                     L"
     gene            547..1413
                     /locus_tag="JBH85_13350"
     CDS             547..1413
                     /locus_tag="JBH85_13350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase"
                     /protein_id="HAU0947185.1"
                     /translation="MKNRRDEQTMLTLIIKIANDDERIKIVIMNGSRASPSAKKDIFQ
                     DYDIVYLVTEIESFVHDKNWINQFGELLIMQTPDEMDGQWPKFKGKYTYLMQFKDWNR
                     IDLTLLHIDQLETMPRDSQSLLLLDKDNLIAPFGEPTDEDYLPSPPTEKDFVNCCNEF
                     LWVSTYVAKGLWRKQLIYAKHVSEQIVKEELIKMLMWYAGIQTNFSQPMGTYGKYIEN
                     HLELELRQEFLKTYVDADYKNMWASLFKMCEIFNDLAIKISSYFGYSFNQKEFDNVVD
                     YLQDVKNNKIPT"
     gene            1513..3342
                     /locus_tag="JBH85_13355"
     CDS             1513..3342
                     /locus_tag="JBH85_13355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0947186.1"
                     /translation="MEQILKFEGNVMPKTPNNCSLSSGNKPPTFLRILFSYMAEYRWN
                     TAFFILFGLFWAFTLPYMSYLLGQIIDEIKFQNPKQFDTFSLILTSLILYVAIHVLRS
                     LGYYVHGLFSLTSIPEKKAKLIKQLFNHLGNQSIGYFEDKHSGYLTNKITNASSSIEP
                     LIFNLFTIIYPQSLAIILTGILLSLVVPYFGVVLWLWGAILIIYSYHSAKIGNDKAML
                     FANSNSKVNGKVVDVVNNIHTVIYNAEMSFELGNLDTDIQDMVQNDRNLQRHMTKVML
                     VQHIAMNILVAFFLIGSVLGYNYGYVSVGDIVFVMTSVTAIAGLTSSLGKCFLDFVTN
                     AGRLNEGLSLLGDQHTITDNANAQAHQINNGEIQFHDISFAYPNQPPIFLNFNLTIPA
                     KQKIGIVGSSGAGKTTLFKLLMRLYNVEKGVIAIDDLPINAYTKKSLCSQIAIVPQHL
                     TLFHRSIYDNITYGCNNFDKSDVILAAKKAHCHEFISELPQHYDTIIGEQGVKLSGGQ
                     RQRIAFARAILKNAPILLLDEATSALDSSTEQAIQDGLQNLLADKTALVIAHRLSTLK
                     AMDRILVLEDGKIIENGTHTELLEKKGAYYNYWTHQSEGFIRA"
     gene            3633..>4310
                     /locus_tag="JBH85_13360"
     CDS             3633..>4310
                     /locus_tag="JBH85_13360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent ubiquitin ligase"
                     /protein_id="HAU0947187.1"
                     /translation="MPKYVEGVELTQEGMHAIFARMGHGDITSGSIYNGVPTIDTEAL
                     NRQGFMPVLTGVGPRRDSGHWIMLIKGPGNQYFLFDPLGKTSGEGYKNTLLAQLPIAS
                     TLSVIPNEPGLNKGLCGYWVASVGLKARSELSKDNPPNLETLGQITTDAMKDELTDNG
                     YLKITGWLKAVADKFPEGDPQPDAKALRQTTEKDLHIEIPSPVSPIKDTAPKEVSTKP
                     TAPQVAPK"
BASE COUNT         1469 a          796 c          761 g         1284 t
ORIGIN      
        1 gagagttatt ggaaaaatca aaaattaatc ccgcgattgc agagtatatc acaggcactt
       61 catccggggt tatgatggtt gattcctatg aaaaactatt agaactctct aaaattaact
      121 atgctgttgc tgataatatg acacaaactc aattgggtct ggatttaatt gatagctatg
      181 aaaaatttct ggaaataaca aagataaatg ctaaagttgc ttttaatttt caaatattaa
      241 attatcaaag gtatgtcaaa ctggtcgact catatcaaca atcttcacaa gcaaaatctc
      301 tttcagacct aaatacctcg gcaaattcgc aacttttttt taagaaacgc gattctactg
      361 gacaagaccg agcttctatt accacaggac aagcgagagt agctcatgat acagttggat
      421 tggggctgaa atggaacgaa gctatccaga ataccattag cgagaacatg atgaaccaga
      481 gactttaaca gcaaacccta atagctattc tagaatttaa atttaaaaag gccataatcc
      541 agaaatatga aaaatcgacg tgatgaacaa acaatgctta cactcatcat caaaatagct
      601 aatgacgatg agaggattaa aattgtgatt atgaatggct ctcgagcaag cccttcagcg
      661 aaaaaagata tttttcagga ttatgatatt gtgtatctgg taactgaaat agaatcattt
      721 gttcatgata aaaattggat taatcagttt ggtgaattac ttatcatgca aacacctgat
      781 gaaatggatg ggcaatggcc aaaatttaaa ggtaaatata cttatctgat gcaatttaaa
      841 gattggaata ggattgattt aaccttgtta cacatcgatc aactggaaac tatgcctaga
      901 gacagtcaaa gtctcttatt gcttgataaa gacaatttaa ttgcaccttt tggcgaacct
      961 actgatgaag attacttacc aagcccccct acagaaaaag attttgttaa ctgttgtaat
     1021 gaattcttat gggtaagcac ttacgttgcc aaaggactct ggagaaaaca actcatctat
     1081 gcaaaacacg tttcagagca gatagttaaa gaagagttaa ttaaaatgct catgtggtat
     1141 gcaggaattc aaaccaactt tagtcaaccg atgggaactt atggaaaata tattgaaaac
     1201 caccttgagc tcgagctccg gcaagaattc ctcaaaacct acgttgatgc tgattataag
     1261 aacatgtggg cttcattatt caaaatgtgt gaaatattca atgacctagc gataaaaatt
     1321 tcaagttatt ttggttactc atttaatcag aaagaattcg ataatgtggt agattatttg
     1381 caagatgtaa aaaacaataa aattccaact taatcgaaca aatccacttg gagttaaaga
     1441 ataaatacta ttgagatatc gatgttggtt atcgattttt gcaaatgaat tgagagcact
     1501 ccgccatatg aggtggaaca aattttaaag tttgaaggaa atgttatgcc caaaactcca
     1561 aacaattgta gtttatccag cggtaataaa ccaccaacct tcttaagaat cttgttctca
     1621 tatatggctg aataccgctg gaatacagca ttttttattt tatttggcct tttttgggca
     1681 tttactctac cttatatgtc ctacttactt gggcaaatca tagatgaaat aaaatttcaa
     1741 aatcctaaac agttcgacac ctttagctta atcctaacct cattaattct ttatgttgca
     1801 attcatgttt tgcgaagctt gggatattac gttcatggtt tgttttcact taccagtatt
     1861 cccgaaaaaa aagccaaact gattaaacaa ctatttaatc acctgggcaa tcaatcgatc
     1921 ggttattttg aagataagca ctccggttat ttaacaaaca aaattaccaa tgccagttct
     1981 agtattgagc cacttatttt taatttattt accattattt acccacaatc attagcaatt
     2041 atcctaacag gtatattatt gtccttagtc gttccgtatt ttggagtggt tctctggctc
     2101 tggggagcta tacttattat ttattcatac cattccgcca aaattggtaa tgataaagca
     2161 atgctctttg cgaattccaa tagtaaagtc aacggtaagg tagtcgatgt ggtcaataac
     2221 atccacacag taatctacaa tgctgaaatg tcttttgaac ttggtaatct ggatacagac
     2281 attcaggata tggttcaaaa tgatcgcaat ttgcagcgcc acatgacaaa agtcatgctg
     2341 gtacagcaca ttgcaatgaa tatcctcgtc gctttctttt taataggctc agtgcttggg
     2401 tataattatg gttatgtcag tgtaggcgac attgtttttg ttatgacatc agttactgct
     2461 attgcaggcc tcacaagcag ccttgggaaa tgctttctcg attttgttac taatgccggg
     2521 cgtttaaatg aagggttgag cttattggga gatcaacata cgattactga taacgcaaat
     2581 gctcaagcac atcaaattaa taatggtgaa attcaatttc atgacatttc atttgcttat
     2641 cccaatcaac cgccaatttt tctaaatttt aatttaacga ttccagcaaa gcagaaaata
     2701 ggaattgtag gtagttcagg ggctggtaaa accacattat tcaaattatt gatgcgatta
     2761 tacaatgtag aaaaaggtgt cattgcaata gatgacttgc caataaatgc ctacactaaa
     2821 aaatcacttt gctctcagat tgcaatagtg ccacagcatt taacactttt tcatcgtagc
     2881 atttatgata atatcaccta cggttgcaat aattttgata aatcagatgt gattttagct
     2941 gcaaagaaag cacactgcca tgagtttatc tctgaactcc cacaacatta tgacactatt
     3001 attggcgagc aaggcgtaaa attatcaggt ggacaaagac agcgtattgc atttgcccga
     3061 gctattctca aaaatgcacc tatcttgtta cttgatgaag cgacatcagc cttagactcc
     3121 agtactgaac aggcaattca agatggctta caaaatttgt tagcagataa aactgcttta
     3181 gtgatcgcgc accgtctatc aacgctcaaa gcaatggata gaattctagt tttagaagat
     3241 ggcaagatca tcgagaatgg aacacatacc gaactattag aaaaaaaagg agcctattat
     3301 aactactgga cacaccaatc ggaaggtttc atacgggcat aaagtaacct gatatcagcc
     3361 tgtaaactgt taatataatc ctaagaaaaa cttataacta ttaaaacatt aaagtcttat
     3421 atcattgtat caactcctct tggcttattt ttaaaataga aagctcttac tgtctatcaa
     3481 attccccaat cacaaaaaat caaaagacta attttaaaca cttaatattt ccttaaaact
     3541 attatcctat aattaagtat acaaagtgtg aatattcgta tccattagaa tcagtatttg
     3601 catgtacaaa catcagtttg ggagaaagta aaatgcctaa atacgtagaa ggggtagaat
     3661 taactcaaga aggtatgcat gctatttttg ctcgtatggg gcatggcgat atcaccagcg
     3721 gtagcattta taatggagta ccgactattg acacagaggc cctgaacaga caaggcttca
     3781 tgcctgtttt aacaggagta ggccccagaa gagattctgg tcactggatc atgttaatca
     3841 aagggcctgg taaccaatat tttctctttg acccactggg taaaacatca ggcgaaggct
     3901 ataaaaatac tttattagcc caattaccca tagcctctac tctttctgtt atccccaatg
     3961 agcccggcct aaacaagggg ctatgtggct attgggtagc ctctgttgga ttaaaggcac
     4021 gttctgaact cagtaaggat aatcctccca atttagaaac tttgggtcaa atcacaacgg
     4081 atgcaatgaa ggatgaatta accgataatg gttatctgaa aattaccggc tggctaaaag
     4141 ctgttgctga taaatttcca gaaggtgacc cccaacccga tgcgaaagca ttaagacaaa
     4201 ccactgaaaa agatttgcac atagagatac cctctcctgt ttctccaatc aaagacacag
     4261 ctcctaagga agtttctaca aaacctactg caccacaagt agctcccaag
//
LOCUS       DACVWI010000225         4309 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.226, whole genome shotgun sequence.
ACCESSION   DACVWI010000225 DACVWI010000000
VERSION     DACVWI010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.226"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(102..356)
                     /locus_tag="JBH85_13365"
     CDS             complement(102..356)
                     /locus_tag="JBH85_13365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947188.1"
                     /translation="MEGILMNKIFNLASIACFLFFSLIAFAADIPGLDEGTDKLNMEE
                     CVGENYQQCLDDVCLTSDEIDCNSNCQSLAEDKCEQQAVD"
     gene            460..1755
                     /locus_tag="JBH85_13370"
     CDS             460..1755
                     /locus_tag="JBH85_13370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAU0947189.1"
                     /translation="MRSKRILLTNFTRAIYSESCCIRPDTEKELIHYIAQNQPKNMLT
                     RGAGLSYSDSCLNQDGLVIDTSRFNHFIDFDVETGIVVCQGGTPFKDLFLLHDEFIPP
                     VLPGTAFATVAGGIAHDVHGKNNHSAGSFGHHISWFDLLIGDQIMHCSREKNSDLFFA
                     TIAGLGLTGIITQVAIRLKKAPRHLAIKNKPFASIQELIAEMATYGLQQDYQVAWLDL
                     LYSEPRAILSTANYCESPNYPDKKLKIYSLPKLPFGLIKKWNMKVFNQYFYSRQKENE
                     MMSLTQYNNPLDKISHWNRLYGPRGLIQFQAVFDQDKAAQIINHILEIIRTHSATPTL
                     TVLKLFTQPGLGLLSFCRPGFTLAIDFINNPHAKKAISAMNQFIAENDGCVYLAKDLL
                     LNPEQYFTMYENQSKFAQILTKYRCPMRSDLATRLGIIK"
     gene            1707..2474
                     /locus_tag="JBH85_13375"
     CDS             1707..2474
                     /locus_tag="JBH85_13375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0947190.1"
                     /translation="MPHAFRSCDTFRNHKMMQRKWVVLGATSVIAEQFAHFAAQAGNH
                     LCLVARNSEQLALISKDIQLRYKIPCNAITINLSEPNEQLLTILETRERELDLFIAHC
                     DFTDNNHLNPQSIKHLIDTNISSTAILINTYLQSQQEKHRIVYLSSVASCRGRAKNSL
                     YGASKAAIEIFLEGLQQKATPHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACW
                     EKINHNKRLFYYPSFWKVVMAIITKLPFFIYKRMGKI"
     gene            2494..3501
                     /locus_tag="JBH85_13380"
     CDS             2494..3501
                     /locus_tag="JBH85_13380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0947191.1"
                     /translation="MLLCVITPYYRLLYNDKNYPSINLSNIMIGFKIMNIADLQSFLA
                     VVELHSISLAAKKLHITQPALSKRIRKLESEWNTQLFISSGLRTELTDKGKQLLPYVR
                     QMVYLSHELISSTGTDKKKPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLI
                     ADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPLWRERLIPIVGLSHPLAKIKEKLSFA
                     ELAEFDAVLMEKNFIIRRIIDKEAEKQKLTLKIRAEANIIYNNIALVEQGMAWSMINE
                     RLLNPNLKPLELSDYALSIDFYCHFLQKRTDERLIRIFIDNLVNWVNTSSELSSFSLV
                     N"
     gene            complement(3511..3732)
                     /locus_tag="JBH85_13385"
     CDS             complement(3511..3732)
                     /locus_tag="JBH85_13385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947192.1"
                     /translation="MDNGGTLEGVSRLFSVGTTTIKNWKRLRAQTGKLEGSGRPCNPY
                     KIDADALKLYLKERPDAFLNGNPPIFNWQ"
     gene            3830..3994
                     /locus_tag="JBH85_13390"
                     /pseudo
     CDS             3830..3994
                     /locus_tag="JBH85_13390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611931.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT         1408 a          817 c          723 g         1361 t
ORIGIN      
        1 ttggggtttt tcataagtct tatgcacagt atttgaggtt gtgagcgttc cttaatggta
       61 gtgaaatcac ttcaaaaata aatgtttaga aaatcctcca cttagtctac tgcttgttgc
      121 tcgcatttat cttcagctaa actttgacaa ttggagttac aatctatttc atcagaggtt
      181 aaacaaacat catccaggca ttgctgataa ttttccccaa cacattcttc catatttaat
      241 ttatcagtgc cctcatccag accaggaata tccgcggcaa atgctatcaa ggaaaaaaat
      301 aaaaagcagg ctatgctggc aagattgaat attttgttca ttagaatacc ttccattgat
      361 atttgattta attatagaca tcctatagcc tttgttcctg tttccataat aaaaaaatca
      421 tgcgacactc actcaactgt ctatttaaaa atttctgata tgcgcagcaa aagaatctta
      481 ttaactaatt ttacccgcgc aatttatagt gaatcctgtt gtataaggcc agacacagaa
      541 aaagaactta ttcactatat tgcacaaaat cagcctaaaa acatgctaac caggggtgca
      601 ggattgagtt acagtgatag ctgtctaaat caagacggcc tggtaattga tactagtcgc
      661 tttaatcatt tcatcgattt tgatgtcgaa acaggcatcg tagtatgtca gggtggaaca
      721 ccatttaagg atctgttttt acttcatgat gaattcattc ccccagttct cccaggcaca
      781 gcatttgcca ctgtagcagg tggaatagcc catgatgttc atggtaaaaa taaccattca
      841 gcgggaagtt ttggacatca tatttcttgg tttgatttat tgataggcga tcaaatcatg
      901 cattgtagcc gcgaaaaaaa tagtgatcta tttttcgcaa ctatagcagg tttaggttta
      961 acaggcatta ttacacaagt cgctattcgc cttaaaaaag caccacgcca tctggcaata
     1021 aaaaataaac catttgcatc tatccaagaa ttaattgcag aaatggcgac ttatggtctt
     1081 cagcaagatt accaagtagc ctggttagac ttgttatact cagaacccag agccatttta
     1141 tcaacagcaa attattgtga atcgccaaac tatcctgata aaaaattaaa aatttatagc
     1201 ctgcctaaat taccatttgg acttatcaaa aaatggaaca tgaaagtatt taatcaatat
     1261 ttttactcca gacaaaaaga aaatgaaatg atgagtctca cccaatacaa taatcctctg
     1321 gataaaatat cacattggaa ccgactctac ggacctagag gacttataca gtttcaagcc
     1381 gtatttgatc aagataaggc agcgcaaatt attaatcaca tattagagat tattaggact
     1441 catagtgcta ctccaaccct cactgtcctt aaactattta cacagcctgg gttaggtttg
     1501 ctttcgtttt gtcggcctgg atttactctg gctattgatt ttattaataa tcctcacgcc
     1561 aaaaaagcaa taagcgcgat gaatcaattc attgcagaaa acgatgggtg tgtttatttg
     1621 gctaaggatt tattactaaa tccagaacaa tattttacaa tgtacgaaaa tcaatcgaaa
     1681 tttgctcaaa tacttacaaa atatcgatgc cccatgcgtt cagatcttgc gacacgttta
     1741 ggaatcataa aatgatgcag aggaaatggg ttgttttagg agctacttca gttattgccg
     1801 aacaattcgc acattttgct gcgcaagccg gtaaccattt atgtttagtt gcacgcaact
     1861 ccgagcaatt agccttaatc tcaaaagata ttcaattgcg atataaaatc ccttgtaacg
     1921 cgataactat caatttatcc gagcctaacg agcaattgct taccatttta gaaaccagag
     1981 aaagagaatt ggatttattt attgcgcatt gtgattttac cgataataac catttaaatc
     2041 cgcaatcgat taaacattta attgatacca atatctcatc tacagcgatc ctgattaata
     2101 cctatttaca atcccaacaa gaaaaacatc gcatcgttta tttaagctct gttgcttcct
     2161 gccgcggccg tgccaaaaat agtctttatg gtgccagtaa agcagcaatt gaaatatttc
     2221 tcgaaggcct gcagcaaaaa gcaactccac atcaacatat cttaatcgct cgccttggat
     2281 acattgatac aaaacaaacg tatggactac ccggagtttt ttacgcagct caacctcatg
     2341 actgtgcaaa ggcatgttgg gaaaaaataa atcataataa aagattattt tactatcctt
     2401 ctttctggaa agtggtcatg gcaattatta caaaactccc ttttttcatt tataaaagaa
     2461 tgggaaaaat ataagtatca ttatcgcaat gatttgcttt tatgcgttat aacgccctat
     2521 tataggcttt tgtataatga taaaaactat cctagtatta atttaagtaa tattatgatt
     2581 ggttttaaaa taatgaatat tgccgatttg caatcttttc ttgcagttgt agaactccac
     2641 tctatctctt tagctgccaa aaaattgcat attactcagc ctgctttaag taaaagaatt
     2701 agaaaacttg agtcggagtg gaatacccaa ctttttattt cttcaggatt aaggactgag
     2761 ctaactgata aaggaaaaca attattgcct tatgttcggc agatggttta tctgagccat
     2821 gagttaatta gcagtactgg tacagataaa aaaaaacctc agttactgct aaatattggt
     2881 accacagtat atattgctca aactattatc ccccccctta taatccatat gaacgcactg
     2941 gacttgaact acttcattaa tacgaaactg attgctgaca aagatgtagc tcacggttta
     3001 agcgaaggtg cttatgatct gattatctct ccgttcatga gtaattctgc tgaaattaag
     3061 tctgtacctt tgtggcgaga aaggctcatc ccaattgtcg ggttatcaca tcctctagca
     3121 aaaattaaag aaaaactatc ctttgctgaa ttagcagaat tcgatgcggt gcttatggaa
     3181 aaaaacttta taatacgccg aattattgat aaagaagctg aaaaacaaaa gttgactctc
     3241 aaaataagag ctgaagccaa tattatttat aacaacatag ctcttgtcga acaaggtatg
     3301 gcttggagta tgattaatga acgcttattg aatcctaatt taaaacctct cgaactatct
     3361 gattatgccc tcagcattga tttttattgt cattttcttc agaaacgtac agatgaacga
     3421 ttgattcgta tttttattga taatctggtc aattgggtta acacgtcaag tgaattaagc
     3481 tctttttccc ttgttaatta gataaaccct ttattgccag ttaaaaatgg ggggattacc
     3541 gtttagaaaa gcatcaggac gctcttttag gtataatttt aatgcatcag catctatttt
     3601 gtagggattg caagggcgac ctgaaccctc tagcttccct gtttgtgctc tcagacgctt
     3661 ccagtttttt attgtagtgg tccctactga aaacaatcta cttactcctt ctaacgtgcc
     3721 tccgttatct atatgccgta acacgttttc tcaaagtcta atgaataggt cataaattaa
     3781 aaagcgtcat aataacaaat tacttgggca tttcaaattt taaatcagta tagttcattg
     3841 gcgtaattat caaaccagac gggaggcaaa acaagatatt ctggattaca ttactatgtt
     3901 ttataacaat caaagattgc attcgtcttt ggattatcta agtccgaatc aatttgaaaa
     3961 tcggtactgg gggttaatga aaaaaggggc ttaactggga tgtgcaaatt ggattgacca
     4021 cttcatgatt tagtcgatta ggagaatgct gcctgatcta tttccatcat acataacttt
     4081 taactgtagc tcatcgacca ttcatattcc caatacatcc tttcagtcac gatctaaaga
     4141 ataaaatttt gttccatact ttaggaggat acaacagtaa tagcctacat cgatagcaaa
     4201 aaccagcagc aactctcttt tagtcattta cgtttgccga aaacgtcaca gtgcattcag
     4261 aatatttgat tatggaaatt aaatgcttac tcggtcagat actgatttt
//
LOCUS       DACVWI010000226         4307 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.227, whole genome shotgun sequence.
ACCESSION   DACVWI010000226 DACVWI010000000
VERSION     DACVWI010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4307
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.227"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            2..721
                     /locus_tag="JBH85_13395"
     CDS             2..721
                     /locus_tag="JBH85_13395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0947193.1"
                     /translation="MSTVAQYKNYYHYISDGWSKEPKEMFKFLAQKIKELPLKPGNKL
                     LDIGCATGELIHFLRHQFPQLHYTGIDVFDDLIEVCKELQPNVNFINASALDLPFEFE
                     NQFDIITVVSVISIFDTIDLDIFWDNLFKATKDNGVIYVLSPFNEYGVDCEIRHRKRI
                     NNIKGEWERGWNIFCKETIAEYLEGRCKNWFFHPFKFNLELNQREDVIRTWTMKTEFN
                     DRQLTNGMKLMVDHYLLEIHI"
     gene            734..1819
                     /locus_tag="JBH85_13400"
     CDS             734..1819
                     /locus_tag="JBH85_13400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein"
                     /protein_id="HAU0947194.1"
                     /translation="MSQPFTIGPFSIGENHPPIFLAEIGTFFNQDLGIAEQLLHKIIT
                     IRDKVPYQPLILKTEILNNPNICLPVDYEETYTSKSGEVRKENYRSLIERKILPLEHY
                     SMLFSLLKNANLPFIVSIYELDTIDFAIKQGACALKTSSSNIVHIPLIRHLAKTGLPL
                     IIDTGRSSLTDICKAVETAKNAGCEKIIIEHSPDGHPALPEAHNLRMLRTLNQCFSLP
                     VGLSDHYNGIEMLYMSIALGASILEKGVHLYPEDIDQDISHTMGIDQLAKTLETIYNC
                     WQALGQPMRDLETPIKGVLGSSQRTCLVAKQKLQPGSLISLDNTTFAFPCKGVPTQYW
                     DLVNGWELQNKVSIGEPIKWSDIKQKK"
     gene            1816..2817
                     /locus_tag="JBH85_13405"
     CDS             1816..2817
                     /locus_tag="JBH85_13405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HAU0947195.1"
                     /translation="MIVRNPTWNSLTPPLPKFVSCNTVETDFLKEKLGEDGRVYIAQF
                     DLKSTSAFLFQRKSDQKKFFIKKVSSEHKRQYQQSEHLAQFIACPDYIVNIAINCVSN
                     EEENSLYYIYPYIHGKRLFAEPEEIISLATALAKLHLKKKSYPDQQLIIKNTTERTSQ
                     LNFIRKALADGCYSYIPHFSFVKKMAQQYDFDWINQEDAQPIHGDLNAGNLLLSEDNM
                     ICFFDFEDALHSFHPVVLDLLFVIERIIFNQNSSTEQLLNLGLMFIHAYKKAGGTYQY
                     KTRDEFGLTILALKAFCLLTLLAEKNKNILSSEWDKFLKLTQKAENERGLIKTILQG"
     gene            2828..3955
                     /locus_tag="JBH85_13410"
     CDS             2828..3955
                     /locus_tag="JBH85_13410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947196.1"
                     /translation="MRILVTARDVGAALNIIEIVKILKQYAGVTVFIYAQPPASKYFL
                     RAGIQPVFEVPLPPSRSLNEASDLLSYANQLIDKLNPDIILSGLSSPGEAGIDEAIIA
                     ECPAHIKTFVLQDFWGEVNFFFEKLADCYLCIDHHAAEITKKRFNAKTEVIGSPRHAI
                     YQTLNIEEQRNYIREYFNITQSTKTIGLFGQALHGIPGYMETISQWLQACLQQEKTKL
                     VIFYRPHPRESEADKEETIRLLNASGLEWKILSTKLVEESLLACDLVCSFFSNCLYDA
                     AYLNYFSLQPTLIPVVLNFNSQIQNYTNQLSLYEASPYRKQELAFFCESAHTLANDIA
                     HLLSKECSYKYWLQSKITLENPSKSIINTLTSLFNRIHNIA"
BASE COUNT         1499 a          742 c          711 g         1355 t
ORIGIN      
        1 tatgtcaact gtcgcgcaat acaagaacta ctatcattat atttccgacg gctggagcaa
       61 agaacctaaa gaaatgttca agtttcttgc tcaaaaaatt aaagaattgc cattgaaacc
      121 tggaaacaaa ttattagata ttggctgtgc aacaggagaa ttaattcatt ttttaagaca
      181 tcaatttcca cagctgcact ataccggaat agatgttttt gatgacttga ttgaggtatg
      241 caaagaactt caaccgaatg taaattttat taatgcatca gccttggatc tgccttttga
      301 atttgaaaat caatttgata ttattactgt tgtaagtgtt atttctatct tcgatactat
      361 cgacttagat atattctggg ataatctctt taaagcaacc aaagataacg gagtaatcta
      421 tgtcttgtca ccatttaatg aatatggggt agattgtgaa atacgacata gaaaaagaat
      481 aaataatatt aaaggggaat gggaacgcgg ttggaatatt ttttgcaaag aaacgatagc
      541 agaatatctt gagggtcgtt gtaaaaattg gttttttcat cctttcaaat ttaatcttga
      601 attgaatcag cgtgaagacg taattagaac ctggacaatg aaaaccgagt ttaatgatag
      661 gcaattaact aatggtatga aattaatggt agatcattat ttattagaaa ttcacatata
      721 aacgagacag tcaatgagtc agccttttac aattggacca ttctctattg gagaaaatca
      781 tcctcctatt tttttagcag aaataggtac tttttttaat caggatcttg gcatagctga
      841 acaattgcta cacaaaatta taaccatcag agataaagta ccgtatcaac ctcttatact
      901 aaaaacagaa attttaaata acccaaacat ttgcctacct gttgattatg aagaaaccta
      961 cactagtaaa tcaggtgagg ttcgcaagga aaactaccgc tcattaattg agagaaaaat
     1021 actgccttta gaacattaca gtatgctatt ctcactatta aagaatgcca atttaccctt
     1081 catagtttca atttatgaat tggacactat tgattttgca ataaagcaag gggcctgcgc
     1141 actcaaaacc tcttcatcaa acattgtcca tattccttta attcgtcatc tggcaaaaac
     1201 aggattaccg ctcattattg acactggaag atcttcctta actgatatat gcaaagcagt
     1261 tgaaacagca aaaaatgccg gatgtgaaaa aattattatt gaacatagtc ctgatggcca
     1321 tcctgctttg ccagaagcac ataacttaag aatgttacga actttaaacc aatgtttttc
     1381 attaccagtt ggattatctg accattataa tggaattgaa atgttgtata tgtctattgc
     1441 attgggagct tcaatcctgg aaaaaggggt tcatctctat ccagaagata ttgatcagga
     1501 catatcacat actatgggga ttgatcaatt agccaagact cttgaaacaa tttacaattg
     1561 ttggcaagct ttaggtcaac caatgcgaga tctggaaacc cctataaaag gagtacttgg
     1621 cagctctcaa agaacttgtt tggttgcaaa gcaaaagctt caacccggct ctctaattag
     1681 ccttgataat acaacctttg cctttccttg taagggagtt cctacccaat actgggatct
     1741 ggtaaatggc tgggaactac aaaacaaggt atctataggt gagcccatta aatggtcaga
     1801 tattaagcaa aaaaaatgat tgttagaaac cctacttgga actctcttac ccctccgctt
     1861 cctaaatttg tttcttgtaa tacagttgag acagatttcc tgaaagaaaa attaggcgaa
     1921 gatggtaggg tttatattgc tcaatttgat ctaaaatcaa cttctgcttt tttatttcag
     1981 cgtaaaagtg atcaaaaaaa attttttatc aagaaagtat cctctgaaca taaaaggcag
     2041 tatcagcaga gcgaacattt ggctcaattt atcgcttgcc cagattatat agttaatatt
     2101 gcaattaact gcgtttctaa tgaagaagaa aactcactct attatattta tccctatatt
     2161 catggaaaac gcctctttgc tgaaccagag gaaataataa gccttgcaac tgcgttagca
     2221 aaattacatc ttaaaaaaaa atcttatcct gaccaacaat tgattattaa aaataccacg
     2281 gaacgaacat cacagcttaa ttttataaga aaggctttag ctgatggatg ttattcttac
     2341 attccacatt tctcttttgt caaaaagatg gctcaacaat atgattttga ttggattaat
     2401 caagaagatg cccaaccaat tcatggtgat ttaaatgcag gaaatctgtt actatccgaa
     2461 gataatatga tttgcttttt tgactttgaa gacgcattac atagtttcca tccagtagtg
     2521 ttagatttgc tattcgtcat tgagcgcatt atttttaatc aaaatagttc gactgaacag
     2581 ctattaaacc ttggcctcat gtttattcat gcatataaaa aggctggtgg cacataccaa
     2641 tataaaacaa gagatgaatt tggattaaca attcttgctt taaaagcatt ttgtttgttg
     2701 actttgctag cagagaaaaa taaaaatata ctgagttcgg aatgggataa atttttaaaa
     2761 ttaacccaaa aagcagaaaa tgaacggggt ttgataaaaa caattttaca aggataagaa
     2821 agatagtgtg agaattcttg tgactgcgcg ggatgttggt gctgcgctaa acattattga
     2881 gatagtaaaa atacttaagc aatatgcagg tgttactgta tttatttatg ctcaaccccc
     2941 tgcttcaaaa tattttcttc gggctgggat tcaacctgta tttgaagttc cactaccacc
     3001 aagccgatcc ttaaatgaag ccagtgacct actatcctac gccaatcaat taattgataa
     3061 attaaatccc gatatcatat tatctggatt atcatctcct ggcgaagctg gcatagatga
     3121 agcaataata gctgagtgtc ctgcgcatat caaaacattc gtccttcaag atttttgggg
     3181 agaagttaat tttttctttg aaaaattagc tgattgctat ttatgcatag atcatcatgc
     3241 tgcagaaatt acaaaaaaac gatttaatgc caaaaccgag gtgataggct cccctcgcca
     3301 tgccatttat caaacattaa atattgagga acaacgcaac tatataagag aatattttaa
     3361 cattactcaa agtacaaaaa ctattggtct ttttgggcaa gcacttcatg gtatacctgg
     3421 atatatggaa accatttcac aatggttgca agcttgctta caacaagaaa aaaccaaatt
     3481 agttattttt tatcgccccc atcccagaga atcagaagct gacaaagaag aaactataag
     3541 attacttaat gcatctgggt tagagtggaa aattttgtcg actaaattag ttgaagaatc
     3601 attgttagca tgcgacttgg tttgtagttt tttttctaat tgcctttacg atgcagccta
     3661 tttaaactac ttttctttac aacctacact gatccctgtt gttcttaatt tcaactcaca
     3721 gattcaaaat tacacaaatc aattgagctt atatgaagct tctccatatc gaaagcaaga
     3781 gttagctttt ttttgtgaat ctgctcatac actagctaat gacatagctc atttattatc
     3841 aaaagaatgt tcttataaat attggctgca aagtaaaatt acattagaaa atccatctaa
     3901 atctataatt aatacattaa ccagtctttt taatcgcatt cataatattg cataaagcta
     3961 acagtaatcg ctcactcccc ttgtcatgta agtatataaa attatgatat ttttacgaca
     4021 agatgttttt attaccatca aaaatcgcta taaggagtca aaagataaga ctctgatttt
     4081 atgactgatt tatcccaaat caatttaact ccgaagaatc tagaagaagc attagaaaca
     4141 ataggccatt tagcaaaaat aatcattgag ttaaaagaag aaaatgctcg attaagaggc
     4201 accaaatcaa tatgagtcgc agatattaaa aacagtagat taattgcatg tctctttttt
     4261 cttgtctgcc ggacctttgg aataaaaaaa ttgtaacttc aaaagcc
//
LOCUS       DACVWI010000227         4298 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.228, whole genome shotgun sequence.
ACCESSION   DACVWI010000227 DACVWI010000000
VERSION     DACVWI010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.228"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            222..2219
                     /locus_tag="JBH85_13415"
     CDS             222..2219
                     /locus_tag="JBH85_13415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAU0947197.1"
                     /translation="MLNSQQMAAVKYIDGPLLVLAGAGSGKTRVITQKIGYLINSCGY
                     NANSICAVTFTNKAANEMRARVSAFLPAVSRRGLKVATFHTLGLSIIKRDVSRCDLKP
                     GFSIFDSEDCLQILRGFLPVNKATDRDFILKVQQQISLWKNNLLNPELILQNPPETLL
                     CDEALTIYPRYQEALKVYNAVDFDDLIRLPVDLLNDHADVLEYWQNKIRHLLVDEYQD
                     SNTSQYLLVKKLAGVRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDFPRLKIIKLEQN
                     YRSTSRILHAANHLIAHNQHLFEKKLWSDLGHGELLRVVSCKDEQDEAEHVIADLISH
                     KLRNRTNYSDYAILYRGNHQARIFEKVLRHHGIPYHISGGQSWFAKLEVRDIFAYLKL
                     LCNEADDAAFLRAITTPKRGIGESSLDALGRYAQSRGISLYHGSDHLALSEFVADKQR
                     MIFHDFKLWMEDIKKRISSDSVLEHLRQMVEDIGYEAYIYEQCDSPAKAQKKMDNVWE
                     LLEWVNRLLNKEPEQSLMDVVNKLILIDILEQSDESSSDVVQLMTLHASKGLEFPFVY
                     LVGMEEELLPHRVSIDDDQIEEERRLAYVGITRAQKGLCFTLAKQRRRAGELQDCVPS
                     RFLDELPQESLEWFGKGGERCEEQSKKLAKSHLEGLKNLLS"
     gene            complement(2303..4285)
                     /gene="iroT"
                     /locus_tag="JBH85_13420"
     CDS             complement(2303..4285)
                     /gene="iroT"
                     /locus_tag="JBH85_13420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter IroT"
                     /protein_id="HAU0947198.1"
                     /translation="MNIKNIPIKPQKIPYYLFLLLLTVGASLILGFLSFGGMYALWPV
                     LPLAFAGFALSVAYEGEIYLQNIKGALNKLFKFNYLKNYLAKEYLLNHFPNTDEENCP
                     QFFKDYKKQLTLLAEFGHKELNQDSKKRKRQIEKTLSDMEKWFALQLFSDKNNPSPNT
                     SKYTIELLDWLALNKRDEWIKQYEKRHFQFHIVKGFSVVAGLFMGLGSTYLIVEAFTI
                     IPFFATIPFTLWPIIILPMATVAGAAYGMLTYNAVTDMINNNTVVKWYNKIRNDLSQG
                     LTVRNVFIATTAVFLVGLALALTVCTAGTWWTIATNARPLFDWMKKMPSFIMGIINPI
                     ITGASAIVFNIQNTAESLDMVDEATRSNKNVFQKIYEAISNGYQHLRETENWLQIVNP
                     FRILLKLTITPLRILLFLGHLISVAVTSDRMPGVPQILSALVAIISEGFEDAHYFIGH
                     THEDELDEEHGHQDHHQFEKLLKERLDPDSDQDHNMDIPTWILKTIASPIYGLAALWD
                     CSASKLNPSQENHSKNLPSGKKPHVLSLGEAWNKQWGVAKEFNVEFSTHAKRPSQEWQ
                     VEHAVAQIDKFQRKHLKDIVIGRELADKKIIALNHLKEKIRHPEKGETLSDTLEQAKK
                     QPDYNQHRLFNQKGEKTRTQLFIEELPERINLSSGK"
BASE COUNT         1298 a          724 c          929 g         1347 t
ORIGIN      
        1 gtaaggagtt attatgaaaa ataacagttt acttcttccc ctatttaaaa caatagacaa
       61 attattgttt ggtatagaag aaattaaaga aatagaaaaa aaaccagaat atattctttg
      121 tgacaatgaa gacgagtttg atgtagaacg ctctatcaat taattcttgc gtgaaaaaga
      181 aagcctgggt gataatgcct tttttttgag cgggaataag tatgttgaat agccaacaaa
      241 tggctgcagt aaaatatatt gatgggcctt tgttggtgct tgccggggct gggagtggta
      301 aaaccagagt tattacacaa aaaattggtt atttaattaa ttcatgtggt tataatgcca
      361 actccatctg cgccgttact ttcacgaata aagcggcgaa tgaaatgcgc gcaagggttt
      421 cggccttttt accagctgta agcaggcggg gattaaaggt tgcgacattt catacattag
      481 gcctaagcat catcaagcgt gatgtttcta gatgcgattt gaaaccagga ttttccattt
      541 ttgatagtga agattgtttg caaattttgc ggggtttttt acctgttaat aaggcaaccg
      601 atagagattt tatcctcaaa gttcaacaac aaatttctct ttggaaaaat aatttattga
      661 atcccgaatt aatactccaa aaccctccgg aaacactttt atgtgacgag gcgttaacaa
      721 tttatccacg ctatcaagaa gcattaaaag tatataatgc agtggacttt gatgatttaa
      781 ttcggttacc tgtcgatcta ctgaatgatc atgctgatgt gttggaatat tggcagaata
      841 aaattcgtca tttgttggtg gatgaatatc aggattcaaa cactagccag tatcttctgg
      901 taaaaaaatt ggcaggggtt cgtgcccact ttacggttgt gggtgatgat gatcaatcga
      961 tttatgcctg gcgtggtgcc aaaccagaga atttggcgca gttacaaaaa gattttcctc
     1021 ggttaaagat tattaaatta gaacagaatt acagatcaac cagccgaatt ttacatgctg
     1081 ccaaccatct gatcgctcat aatcaacatt tatttgaaaa aaaattatgg agtgatttgg
     1141 ggcatgggga attattgagg gttgtcagct gtaaggatga gcaggatgag gcggaacatg
     1201 tgatcgctga tttaataagc cataaattac gtaatcggac aaattatagt gattacgcta
     1261 tcttatacag aggaaatcat caagcaagaa tatttgaaaa ggtattaaga catcacggta
     1321 ttccttatca tatcagcgga ggccagtcct ggtttgccaa gttagaagtc agggacattt
     1381 ttgcctatct taaattactt tgtaatgaag cagatgatgc cgcttttttg cgagcaatta
     1441 ctacccccaa acgaggtata ggagagagca gtctcgatgc cttgggacgc tatgctcagt
     1501 ccagagggat aagtttatat cacggatccg atcatttggc cttgtctgag tttgttgctg
     1561 acaagcagag aatgattttt catgatttca aattgtggat ggaagacatt aaaaaacgta
     1621 tcagttcaga ttcagttctg gagcatttaa ggcaaatggt ggaagatatt gggtatgaag
     1681 cttatattta tgaacaatgt gattctcccg ccaaggcaca aaaaaaaatg gataatgtat
     1741 gggagctttt agaatgggtt aatcgtttat tgaataagga acctgaacaa tcgctcatgg
     1801 atgttgtgaa taaattaata ctaatcgata tactggaaca atctgatgaa tcttcaagtg
     1861 atgtagtcca attaatgaca ttgcatgcct caaaaggttt ggaatttcct tttgtttatt
     1921 tggtcgggat ggaagaagaa ttattacccc accgagtgag tatcgatgat gaccaaattg
     1981 aagaagaaag aagattggct tatgtaggga tcacacgtgc ccagaaggga ttatgtttta
     2041 ctttagcgaa gcagagacgt cgagctggag aactgcaaga ctgtgttcca agccgatttt
     2101 tggatgaatt gccgcaagag agtctggaat ggttcggtaa aggcggggag cgttgtgaag
     2161 aacaatcaaa aaaactggcc aaatcccacc tggaaggact gaaaaacttg ttgagttaag
     2221 agtacattat attttatctc cagtaaggag tatcattaac tgaactcctt actgcttttt
     2281 aaggtactaa tgttaatctc tatcatttgc cagaagagag attgattcgt tctgggagtt
     2341 cttcaatgaa aagttgtgta cgggtttttt cccctttttg gttaaatagt ctgtgttgat
     2401 tgtagtctgg ttgcttttta gcttgctcca gagtgtcact caatgtttct cctttttcag
     2461 gatggcgtat tttttctttt aaatgattga gggcgatgat ttttttatcg gctaattcgc
     2521 gaccgataac gatgtctttg agatgctttc tttgaaattt gtcgatttgg gcaacagcat
     2581 gttccacttg ccattcttgc gatgggcgtt tggcatgagt actaaattca acattgaact
     2641 ctttggctac tccccattgt ttattccatg cttctccaag acttaacaca tgaggttttt
     2701 tgccagaagg caaattctta ctatgattct cttgagaagg atttagctta ctggcagaac
     2761 aatcccagag tgctgccaag ccatatatag gtgaagcaat ggtttttaat atccaggtag
     2821 gaatatccat attatgatct tgatcggagt caggatctag tctttccttt aggagttttt
     2881 caaattggtg atgatcttgg tgtccatgtt cttcatccag ttcgtcttca tgggtatgtc
     2941 caataaaata gtgggcatct tcaaagcctt cgctaataat ggcaacgagc gcggaaagaa
     3001 tctgcggtac tccaggcata cgatccgatg tgactgcaac gctgatcaaa tgccccagaa
     3061 acaaaagaat acgcaatggg gtaatggtta attttaaaag aatgcgaaac gggttaacta
     3121 tttgtaacca attttcagtt tcacgtaagt gctgatatcc attgcttatt gcttcgtaaa
     3181 ttttttggaa gacattctta ttactacgag ttgcttcatc gaccatatcc agtgattcag
     3241 ccgtgttttg tatgttaaag actatagcag aggcgccggt tataatggga ttgataattc
     3301 ccataataaa actgggcatt tttttcatcc agtcaaataa agggcgggca tttgtagcaa
     3361 tcgtccacca tgttccagca gtacagacgg ttagggctag tgccagtcca acaagaaaaa
     3421 cagcagtagt tgctataaac acattgcgta cagttaaacc ttggcttaaa tcattgcgaa
     3481 ttttattata ccatttgaca actgtgttat tgttgatcat gtcggtaaca gcattatagg
     3541 tcagcattcc ataagcagcc cctgcgacgg tggccatggg aagaattata atgggccaaa
     3601 gtgtgaatgg aatggtggca aaaaacggga tgatcgtaaa ggcttcgaca atcagatagg
     3661 tacttcccag ccccatgaaa aggccggcaa ccacgctaaa acctttgaca atatgaaatt
     3721 gaaaatgacg cttttcatat tgttttatcc attcgtctcg cttatttaaa gcaagccagt
     3781 caagtagctc tatggtgtat ttggatgtgt ttggagaagg attgttttta tctgaaaaca
     3841 attgcagggc aaaccacttt tccatgtcgg agagtgtttt ttcaatttga cgttttcttt
     3901 tcttactgtc ttgattgagt tctttatgcc caaattcagc caataatgtt aactgttttt
     3961 tataatcttt gaaaaattgc gggcaatttt cttcgtcggt gtttggaaaa tgattcagca
     4021 aatactcttt ggctaggtaa ttcttaagat agttaaattt aaacagttta ttaagagcgc
     4081 cttttatgtt ttgtaaatag atttcacctt cataagctac cgataacgca aaaccagcaa
     4141 aagccaaagg taacacaggc caaagagcgt acatgcctcc aaagcttaaa aagccaagta
     4201 tcaggcttgc tccgacagtt aatagcaaaa gaaacaagta ataagggatt ttttggggct
     4261 taataggtat attttttata ttcattgtag tatatttg
//
LOCUS       DACVWI010000228         4270 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.229, whole genome shotgun sequence.
ACCESSION   DACVWI010000228 DACVWI010000000
VERSION     DACVWI010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4270
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.229"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..526)
                     /locus_tag="JBH85_13425"
     CDS             complement(<1..526)
                     /locus_tag="JBH85_13425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HAU0947199.1"
                     /translation="MMGISIRYIILGIGVMNISSCMVYEDTYTTRYQIYTYDYGQLYP
                     QTDYRARDYNYGNQSGQSVVVPDSYHVGEYHSPVSFKDRDRNWVNSQNPQGYTIQIAD
                     DEKAAYVAQKLYKAPKNDRMAQVKYYQNGKTHYKGLYGTYDSQEAAQKALESLPPEIK
                     QGAGIKDWGSVQGNL"
     gene            800..2125
                     /locus_tag="JBH85_13430"
     CDS             800..2125
                     /locus_tag="JBH85_13430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003632002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HAU0947200.1"
                     /translation="MWTHRRSGQTNQRGSQDHRDPYERDRTRVIHCPAFRRLQRKTQI
                     LGTDEGDFHRTRLTHSLEVDSIGRSIVRNLMTNQEHQLLLSSLLPNDDLISVICLLHD
                     IGHPPFGHGGEVALNYMMRHYGGFEGNGQTLRLLTKVENSYGGFGLDLTRRALLGILK
                     YPVKRANVVAPKQPPIHESIHKTIKINDWLPPKAYFDCEQPEVDWLLSPLSDNDRELF
                     QSLSVKPHGTQTGKAAYHNFDCSIMDTADDIAYGVHDLEDAIHLRLINRSHLDTPEFR
                     QLIGETTLSLHQERLLNSLFSPEICLRKQAIGEMVNYFITSTQIIVTNEEFENSLLKH
                     NIALIPEAHALLRYLMQCIYNNVIDSQEARTFEYGGQTVVLRLFDAISSNPASLLDNK
                     NRVLFSQAPDEVAAYRVVCDYLANMTDEYAYRMHERLFGFNTRTIFERL"
     gene            complement(2166..2241)
                     /locus_tag="JBH85_13435"
     tRNA            complement(2166..2241)
                     /locus_tag="JBH85_13435"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2205..2207),aa:Glu,seq:ttc)
     gene            complement(2280..2355)
                     /locus_tag="JBH85_13440"
     tRNA            complement(2280..2355)
                     /locus_tag="JBH85_13440"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2320..2322),aa:Ala,seq:ggc)
     gene            complement(2683..3777)
                     /locus_tag="JBH85_13445"
     CDS             complement(2683..3777)
                     /locus_tag="JBH85_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947201.1"
                     /translation="MGQMAMLNQSMQILKSLSEGMGTAGGVAWTTFGLLFGSFGLTVG
                     NSALTISLGAISASLFLLVAIPVTYWSYCNSHKENDELRHAIEEQENQIVHYLTEYLL
                     ATRQECLLKNPQKYRNHYDKSVLAEDLKNRLLKTRLKRPVSFTTAQFLDCLLDDNHKN
                     SILGMLIDACTMDKLVLKKKLLTIYRGSVFLQFEELSLFAKLKTGFIAFCAGFGSLAG
                     CSSGSLGLFAALGIFPGFAAVPLVGLAIMGIACIFGLLLSGMSIDTAIQRSKEKQLFL
                     QSKAIHHDLKNLATLKTASVKAELKAQTKYQIGAKEGLTEKLARPKLLKRSSSFDSYF
                     YRNHPLWNISHNLPEASKCGFENLGSPFSR"
     gene            complement(3839..4261)
                     /locus_tag="JBH85_13450"
     CDS             complement(3839..4261)
                     /locus_tag="JBH85_13450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006869862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HAU0947202.1"
                     /translation="MVRVSNLEQSLDFYCNKLGLIEVKRTENAKGRFTLVFLAAPADI
                     EQVQTSYGPMLELTYNWDPEDYTEGRNFGHLAYHVDDIYKICQHLQECGVVINRPPRD
                     GHMAFIRSPDNISIELLQKGEPLPKQEPWLSAPNIGHW"
BASE COUNT         1378 a          874 c          750 g         1268 t
ORIGIN      
        1 tcaaatttcc ttgaacactc ccccaatctt taattccagc accctgttta atttcaggag
       61 gtaatgattc caatgctttt tgagctgctt cttgactatc ataagtacca tataaaccct
      121 tataatgggt tttgccattt tgataatact tcacttgagc cattctatca tttttaggtg
      181 ctttatagag tttttgggcc acataagcag ccttttcgtc atcggcaatc tgaatcgtat
      241 aaccttgagg attttggctg tttacccaat ttctatctct gtccttaaag gatacaggag
      301 aatgatactc accaacatga tatgaatcag gaaccacaac actttgacca gattgattgc
      361 cataattgta atcacgagca cgataatctg tttgaggata cagctgacca taatcatagg
      421 tataaatttg atagcgggta gtatatgtat cctcataaac catacaagaa gaaatattca
      481 ttacgccgat acctagaatg atgtacctga tgctaatacc catcataaca ccccctgatt
      541 ttaactttta cttttactct tatttgttgt tatctacaaa tacaaggaaa actttaggaa
      601 aatgttttat gaattgattc agaattattg gatttctatt caagtcatcg tccgaaaaaa
      661 tttcccttat tctgcgcgca tcaaaaaaat aaatgccatt ataaacaatc gtaattttcc
      721 agagactatg caaagactct attgtttccc aacatggtat agaataaagt aattggtttg
      781 tggaataagg gcaaaagata tgtggactca tagacgttct ggtcaaacca atcaaagagg
      841 ctctcaagat catagagatc cctatgagcg agataggaca agagtaattc actgtccagc
      901 atttagaaga ctacaaagaa aaacacaaat tcttggaaca gatgagggcg attttcatag
      961 aacccgtcta acccactccc tggaagtaga ttctataggt agaagtatcg ttcgcaactt
     1021 gatgaccaat caggaacacc agttgttatt gtccagcctt ttgccaaatg atgacctcat
     1081 cagcgtcatt tgtttgcttc atgatattgg ccatccgccc ttcggacatg gaggagaagt
     1141 cgcattgaat tatatgatgc gacattatgg aggatttgaa ggcaatggac aaactcttcg
     1201 cttactgaca aaagttgaaa atagttacgg tggctttggc ctggatctaa ctcgtcgtgc
     1261 gttgctgggt attttaaaat acccggtaaa acgagctaat gtggtagctc ccaaacaacc
     1321 acctattcat gaatcgattc ataaaacaat caaaatcaat gactggctgc ctcctaaagc
     1381 ttattttgat tgcgagcagc cagaagtcga ttggttatta tcgcctttat cagataatga
     1441 cagagaatta tttcagtctc tctccgtaaa gccccatggc acccaaacag gtaaagcagc
     1501 ctatcataat tttgattgct ctattatgga cacagcggac gatattgcct atggagtcca
     1561 tgacctggaa gatgcaattc acttaagatt aattaaccgt tcacatcttg atactcctga
     1621 gttcaggcaa ttaatcggtg aaacaaccct ctcgctacat caggagcgtt tgcttaattc
     1681 tctattttct ccagaaatct gtttaagaaa acaagctatc ggagaaatgg tcaattattt
     1741 tattacctct actcaaatca ttgtaaccaa tgaagaattt gaaaacagtt tattaaaaca
     1801 taatattgca cttatcccag aagcccatgc cctcctccgc tatttaatgc aatgtattta
     1861 taataatgtc attgactccc aagaagcacg tacctttgag tatggaggtc aaacggtagt
     1921 actccggcta tttgatgcca tcagctccaa tccagccagc ttgcttgata ataaaaatcg
     1981 agtgttattt tcgcaagctc cagatgaggt cgctgcttat agagtcgttt gtgattattt
     2041 agcaaacatg actgacgagt atgcttatcg aatgcatgag agattattcg gatttaatac
     2101 aagaacaatt tttgaaaggc tttagataac aagaaagacc ttaaaacaat agccattcaa
     2161 tataatggcg tccccagggg gattcgaacc cccgttaccg ccgtgaaagg gcgatgtcct
     2221 aggcctctag acgatgggga cctagtactt tttttaccat caacatacaa cgatgttgat
     2281 ggtggagcta ggcgggatcg aaccgccgac ctcttgcatg ccatgcaagc gctctcccag
     2341 ctgagctata accccaaaat aaggtgtgca gtttaattag acgcattaat actgtcaagt
     2401 ggtttttcta ttttaatgca agtcttttat aagacaacct ttttttacat caaaatcata
     2461 aataaatcca aatcacagcg ctaattttat caatagaaat gaacatgggt aaaagcacca
     2521 ttgcagcaaa aatttttgac cgtaagagcc taatccaaaa aaatatttga ccagcacgaa
     2581 aacaaaggtt gtaatagatc tttacataac ctggtttttt gttttaaggc tgagtaccag
     2641 aaaaagtttg caacgcagca atataataaa aggacaggtt attcaacgtg aaaaaggaga
     2701 accaaggttt tcaaagccgc atttcgaagc ttctggaagg ttgtgtgaaa tgttccataa
     2761 gggatggttt ctataaaaat aactatcaaa tgaagaagat cgcttcagta gcttaggcct
     2821 tgctaatttc tctgttaatc cctctttagc tccaatttga tatttggttt gtgcttttaa
     2881 ctcggcctta acagatgcag ttttcaacgt ggccaaattt tttaaatcat gatggattgc
     2941 tttgctttgg agaaataact gtttttcttt actcctttgg attgcggtat caatactcat
     3001 tccagacaac aacaaaccaa aaatacaagc gatacccata attgccaacc caaccaaagg
     3061 aactgcagca aaaccgggga aaatacccag ggctgcaaac aaacccaatg aaccactgga
     3121 acaaccagcc agcgacccaa atccagcaca aaacgcaata aatcccgttt ttaacttggc
     3181 aaataaggaa agttcttcaa attgaagaaa aacactacca cgataaatag ttaatagttt
     3241 ctttttcaat accaacttat ccatcgtgca agcatctatt aacataccca aaatagagtt
     3301 tttatgatta tcatctaata gacagtcaag aaattgtgct gtcgtaaacg aaacaggccg
     3361 ttttaacctg gtttttaata atcgattttt aagatcttcg gccagcacag acttatcata
     3421 atgattacga tatttttgag gatttttaag taaacattct tgcctggttg ccaataaata
     3481 ttccgtcaaa taatgaacga tttgattttc ctgttcttca atagcatgtc gtaattcatc
     3541 attttcttta tgcgaattac aataagacca ataagtaaca ggtattgcga ctaataggaa
     3601 taaactggca gaaatggcgc ccaatgaaat agtcagtgcc gaattgccaa cagttagtcc
     3661 aaaagaacca aatagcagtc caaaggtagt ccatgccacc ccccctgctg ttcccatacc
     3721 ttctgatagt gattttaaaa tttgcatcga ttgattcaac attgccattt ggcccaaaat
     3781 actattttag tatgattaaa ttatttccac tattcactac cagaatgcaa ttgtcaggtt
     3841 accaatgtcc aatattgggt gcagataacc aaggttcctg ctttggcaaa ggctcgccct
     3901 tctgcaataa ctcgatagaa atattatcag gagaacgaat aaaagccatg tggccatctc
     3961 tgggtggcct attaattaca acaccacatt cctgtaaatg ttggcagatt ttatagatat
     4021 catccacatg atatgccaaa tggccaaaat ttcttccctc agtgtaatcc tccggatccc
     4081 agttataagt caactctagc attggtccat aagaagtttg aacttgctct atatcagcag
     4141 gagcagctaa aaataccaag gtaaaacggc ctttggcatt ttcagttcgt tttacttcta
     4201 tcaaacccaa tttattacaa taaaaatcga gcgattgttc taaattcgaa actctaacca
     4261 tggtatgtaa
//
LOCUS       DACVWI010000229         4190 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.230, whole genome shotgun sequence.
ACCESSION   DACVWI010000229 DACVWI010000000
VERSION     DACVWI010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4190
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.230"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..777)
                     /locus_tag="JBH85_13455"
     CDS             complement(<1..777)
                     /locus_tag="JBH85_13455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HAU0947203.1"
                     /translation="MPTRVIEDKGDMTPSFGIDDRIFLGEGLFETIRVNSSKPSFAYM
                     HWERLGNSARQLGIPFEISFDDWFEHLIQKIQKDNLYHGGIKAILSGGPASRGLAERG
                     QVSQLIFQTFNYSIQKHPVRLISINWLRDKANPLYQLKSVNYLEAIIAQRQAIAVGAD
                     DALFFNTENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQE
                     ISLTKKRIEDADAVFLTNSLQGIRRVLSLDNIIFEVNHPII"
     gene            complement(791..976)
                     /locus_tag="JBH85_13460"
     CDS             complement(791..976)
                     /locus_tag="JBH85_13460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947204.1"
                     /translation="MSDLFEEDEEEVIEVVDDFDDVEVDTEIIEAPGVSLDARRRLEN
                     MLEEKRLRDELDDFVDY"
     gene            1223..1804
                     /locus_tag="JBH85_13465"
     CDS             1223..1804
                     /locus_tag="JBH85_13465"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HAU0947205.1"
                     /translation="MSDQYKVALRNTIKQVRSKLSVPYRTASSNQICTRIRSLEQYRQ
                     AKRIALYFAVNGEVDLTFLWKSAPLQGKYCYFPVLNNDSTLSFLPATPSTPFKTNKYD
                     IPEPDVDIELALPIDELDLIIMPLVAFDAHCTRLGMGSGYYDRTLANKSKAHLLGVAY
                     QFQRVDYIEPRPWDVPLDAVITQKAIYWRNPLA"
     gene            complement(1814..2188)
                     /locus_tag="JBH85_13470"
     CDS             complement(1814..2188)
                     /locus_tag="JBH85_13470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HAU0947206.1"
                     /translation="MGGSAFNVMEKNMKMITAIIKPFKLDDVHEALMEIGVPGITISE
                     TRGFGRQKGHTELYRGAEYVVDFLPKIKIELALPDNMVEAAIEAICKSAYTGKIGDGK
                     IFVYALEQVVRVRTGEVGTDAL"
     gene            2297..2557
                     /locus_tag="JBH85_13475"
     CDS             2297..2557
                     /locus_tag="JBH85_13475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HAU0947207.1"
                     /translation="MFDPKQFDELANKLFATLPTSLQNFEKDIQQKFKEVLQSTFSRM
                     DLVTREEFDVQCKVLARTREKLEQLQHQLEDFIKRQEVKNNK"
     gene            2622..4133
                     /locus_tag="JBH85_13480"
     CDS             2622..4133
                     /locus_tag="JBH85_13480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HAU0947208.1"
                     /translation="MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPGFTMVGLAETAVKE
                     SKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSGFDLPIALGILAASEQIPLTNLA
                     NHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
                     REVCDYLCQGTSLQNLPPKPDLLLNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSG
                     APGSGKTMMAKRFSTLLPELSETQALECAAINSIRGKLPDFREWRLPPFRAPHHTASP
                     VALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLESGHICISRAAAQIE
                     FPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALS
                     QEELIKPNTHLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLF
                     LREVMSKLKLSARGYHRLLKVSRTIADMSECNKVMLNHLQQALSYKQILHLPK"
BASE COUNT         1323 a          901 c          729 g         1237 t
ORIGIN      
        1 gataattgga tgattgactt caaaaataat gttatccagg gagagcaccc ttctgatacc
       61 ctgcagacta ttagttaaaa aaacagcatc ggcgtcctca atcctctttt tcgttaatga
      121 tatttcctgc actgacattt tgtgttgctg acaatgtgaa atgaggcgtg ctctggtaat
      181 gccgggtaag atcccatcct ctactcgcgg ggtatacaaa atgttatttt caatcaagaa
      241 taaattggca caagttgttt cagtaacatg attctctgtg ttgaaaaata aggcatcatc
      301 tgccccaacc gcaatcgctt gacgttgagc aataatcgcc tctaaataat tcactgattt
      361 taattgataa agaggattgg ccttatccct tagccaatta atactgatta accgaacagg
      421 atgcttttgt atagaataat taaaagtctg aaatattaat tggctgactt gtcctcgttc
      481 tgccaagcct ctcgaagcag gaccaccact caaaatggct ttaatgccac catggtacag
      541 gttatctttt tggatttttt gaataagatg ctcaaaccaa tcatcaaatg aaatttcaaa
      601 aggaataccc aactgacgag ctgaattgcc tagtctctcc caatgcatat aagcaaagga
      661 aggcttggaa ctattgactc taattgtttc aaataatccc tcacctaaaa aaattcgatc
      721 atcaattcca aatgatggcg tcatatctcc tttgtcttca ataacacgag taggcattat
      781 gatctcataa ttaataatct acaaaatcat ctaactcatc tcgcaatcgc ttttcctcca
      841 acatattttc cagtcgtctg cgcgcatcca aactgacacc gggagcttct ataatttcag
      901 tatccacttc aacatcatca aaatcgtcga caacttcaat tacttcttct tcatcttctt
      961 caaacaagtc actcataaca ttccctcaaa gaattaaaag taacattaaa taattgctta
     1021 aatggaacaa gattccagga cggctatata ccttattttt aattttttgc atagtatttt
     1081 ttaattattt tatgttataa acttatcgca tcgcgcattt ataatcaccc aatgcataaa
     1141 acaacatatt gatacctgga aacacttgaa ctttaagcct aatccatcta ataataaaaa
     1201 agaatattag tgataccaaa tcatgtcaga ccaatataaa gttgctctaa gaaataccat
     1261 aaaacaggta agatccaagc tttctgtacc ctacagaaca gcatcttcca atcaaatttg
     1321 tactcgtatc cgctcgctgg aacaatacag gcaagcaaaa cgaatagcct tgtactttgc
     1381 cgttaatgga gaagttgatt taacgtttct ctggaaaagc gcgcccctcc aggggaagta
     1441 ttgttatttt ccggtattaa ataatgattc cactctttct tttttaccag ccacccccag
     1501 cacccctttt aaaacgaata aatacgatat cccggaaccg gacgttgata ttgagttggc
     1561 cttgcctatt gatgaattag acttgattat catgcctctg gttgcttttg atgcacactg
     1621 tactcgtttg ggtatgggct caggctacta tgatcgcacc ttggctaata aatcaaaagc
     1681 gcatctctta ggagtcgcct accaatttca aagggttgat tacatagaac cacgcccttg
     1741 ggatgttccc ctggatgccg taataactca aaaagctatt tattggcgaa atcccttggc
     1801 ctaaaatgac attctataga gcgtctgtac cgacttcccc ggttctaacc ctcactacct
     1861 gttccaaagc ataaacaaaa atcttgccat caccaatttt accagtgtag gcggacttgc
     1921 aaatagcttc tatagctgct tcaaccatat tatctggcaa tgccagttca attttaattt
     1981 tagggaggaa gtctaccacg tactccgccc ctcgatataa ttcggtatga cctttttgac
     2041 gcccaaatcc tcgagtttca gatatagtaa ttcctggcac tcctatttcc attaaagctt
     2101 catgtacatc atccagttta aatggtttga taattgcggt gatcattttc atattttttt
     2161 ccatcacgtt aaatgcagag ccacccatga tatttctaac acacaatttt tatgttattg
     2221 cttttcaaga catcttgggt atagttgtaa tccaacagtt ttgctagact gtattcaaaa
     2281 ataatccgga gccaccatgt ttgaccccaa gcaatttgat gaattagcta ataagctttt
     2341 cgctacttta cctacgagtc tacaaaattt tgaaaaagac attcaacaaa aatttaaaga
     2401 agtactgcaa tcaacattca gccgaatgga ccttgttacc cgtgaagaat ttgatgtgca
     2461 atgtaaggta cttgccagaa ctcgagaaaa actggagcaa ttgcagcacc agcttgaaga
     2521 cttcattaaa cggcaagaag ttaaaaataa taaataataa ctattagtcg tccataggaa
     2581 atgggatcga cttaagtcca acataataag gaaaaaatct tatgaatctc gcatttacca
     2641 aaacgcgaag cactattggt attgtcgcac aaccagtatc tgtggaagtc catttatcaa
     2701 atggattacc aggttttact atggtaggac ttgctgaaac agcagtgaaa gaaagtaaag
     2761 accgagtgcg cagcgctatt ataaatagcc aattcgaatt tccatgccgt aaaattaccg
     2821 ttaatcttgg ccctgccaat ttacctaaaa cgggaagtgg ctttgacttg cctattgcac
     2881 tagggatact cgcagcatcg gaacaaattc ctctcaccaa ccttgcaaac cacgaattta
     2941 ttggagaatt ggctttaagc ggcgagctta gaggggtttc tgccattata cctgctgttc
     3001 ttgccgctca taaagacaat caacatctga ttatagcgaa tgcaaatgct gccgaagctt
     3061 ctttaaccgg ccatccaaaa gtctttactg ccaataactt acgcgaagtt tgtgattatc
     3121 tatgccaggg tacttcttta cagaacttac ctcccaaacc agatctttta ttaaataacc
     3181 atgaattgga ttggtctgat attaaggggc aacatcatgc caaaaatgct atggtcattg
     3241 ctgcctgtgg gggacacagt attctcctaa gtggcgcacc aggcagtgga aaaacgatga
     3301 tggcaaaaag atttagtacc ttgctacctg aactatccga aacacaagct ctcgaatgcg
     3361 cagccattaa ttcaattcga ggcaaattac ctgatttcag ggaatggcgt ttgcctcctt
     3421 ttcgtgcacc acatcatact gcttcacctg tcgctttagt cggaggaggc aacccgccga
     3481 aacccggtga aatttcatta gcccatcacg gcgtattatt tttagatgaa ttacctgaat
     3541 ttaatcggca agtattagag acacttagag aacctttgga gtcagggcat atttgcattt
     3601 ccagggcagc tgcacaaata gagtttcctg ccaaatttca attaattgca gcaatgaatc
     3661 cttgcccttg tggccaatgg ggtaattcac aagccaattg cttatgtact cctgatagaa
     3721 tcagccgcta tttggcaaaa ctttctgctc cattattaga tagaatcgat atgcaggtta
     3781 caattcacgc attatctcaa gaggagttaa ttaaacccaa tacccattta gaaaaacaaa
     3841 gtcctgctat tagagaaaag gtaacaaaga tgcatgaaat acaaatggca cgacaagata
     3901 gtctcaatgc caatttaaat tccaaaacat gcgaaatggt ttgcgaattg ggatcagaag
     3961 aacaattgtt tctccgagag gtgatgagta aactgaaact gtctgctcgt ggttaccatc
     4021 gcttactaaa agtaagcagg acaattgctg atatgagtga atgtaataag gtcatgctaa
     4081 accatctgca acaggcgtta tcctataaac aaatcttgca tttgcctaaa taaaatttct
     4141 tctcaagtat tggggtgtat aaaaaatcaa ttccgtatta atcatatata
//
LOCUS       DACVWI010000230         4115 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.231, whole genome shotgun sequence.
ACCESSION   DACVWI010000230 DACVWI010000000
VERSION     DACVWI010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4115
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.231"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            75..344
                     /locus_tag="JBH85_13485"
     CDS             75..344
                     /locus_tag="JBH85_13485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947209.1"
                     /translation="MNSKVFSQRFNRELATLGFPEDLTEKTKAVSKVFGVTRHLANAM
                     IFGHVLPDKEQLDKIAEILEVCPQWLSGATDRKKAYSGRETADSV"
     gene            443..1249
                     /locus_tag="JBH85_13490"
     CDS             443..1249
                     /locus_tag="JBH85_13490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RMD1 family protein"
                     /protein_id="HAU0947210.1"
                     /translation="MECLSFCVAKTIDLTRLDLHLKNVSKEFSAVKTRDVIRLNSHRN
                     KDHTLFIFKNGTVVSWGVKRYQIHEYLDIIKLLVDKPVALLVHDEFHYQIGDKTAIEP
                     HGFYDVDCLTIEEDSDELKLSLSYGFSQSVKLQYFETIIDALIEKYNPLIQALSHKGE
                     MPISRKQIQQVIGEILGAKSELNLISNFLYHPKYFWQHPTLEEHFSMLERYLHIQRRV
                     NAINHRLDTLNEIFDMFNGYLESRHGHHLEIIIIVLIAVEIIIAVMNFHF"
     gene            1267..2547
                     /locus_tag="JBH85_13495"
     CDS             1267..2547
                     /locus_tag="JBH85_13495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAU0947211.1"
                     /translation="MPTLKSYFLKDTSLRTEILAGATTFLTMVYIVFVNPKVLHDAGM
                     DQGAVFTATCLITAFACALTGFIANTPIGVAPSVALNIYFSYSVVQGMGVDWQHALAM
                     VFISGLLFLFLTLTKLRRLLVEAIPHNLQIAIVIGISLLIALIALENNQIIIGDQHNL
                     MRLGSIIRPETGLFFLGFILILTLDYHKIPGAIIIGILSISVLSLILGLTSWQGLIAM
                     PPSLEPTFLQLDFSGLSSIVALKTIFTFFLITVFDATGSLIGLLSPTIFKHEKNYYKR
                     LTRSLTADAAASSLAGLMGSASTSPYIESATGIEAGGRTGLTALVIATGFILMLFLFP
                     LAKMIPSFAVGPALLYVACCMIKHITNMKLQDITETAPCMVIIMMVPFTASIADGIGL
                     GIILYTLLKLFTRQKPNPLIIVLSLVFTVFFLIN"
     gene            2850..3446
                     /locus_tag="JBH85_13500"
     CDS             2850..3446
                     /locus_tag="JBH85_13500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HAU0947212.1"
                     /translation="MLEQSLRHYYQLVLVDPILPALRDRITPLSITWLSGIFGLLFIP
                     FVLLDKPYIAISFLLLSGYLDTLDGSLARFQNRASDFGSAMDIVIDRIVEFSAVLALY
                     LFDPQHRATLAILMLGSILLCITSFLVVGIFSNNTTQKSFYYSPGIMERAEAFLFFIF
                     MTLFSSCFNFLAALFCFLVCLTALIRLFEFKKSVQAPS"
     gene            3554..>4115
                     /gene="msrA"
                     /locus_tag="JBH85_13505"
     CDS             3554..>4115
                     /gene="msrA"
                     /locus_tag="JBH85_13505"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HAU0947213.1"
                     /translation="MLRILLYFLLLINTTFCLAKTEKAIFAGGCFWCMEADFDHLPGV
                     LSTTSGFDGGTLKDPTYEQVSAGNTHYAESVMVEFEPNKLSYKKLVEYFFRHIDPTVK
                     NAQFCDHGSQYRSAIFYLNDQQKKIAMEYKKELEQKFPTVYTEIAPSTSFYPAEEYHQ
                     NYYKKNPIRYKYYRYRCGRDTRIQEVW"
BASE COUNT         1196 a          798 c          754 g         1367 t
ORIGIN      
        1 attagtgcaa atgttgggtc aacatctcag taaattcatg ttgagttgac tgtataattt
       61 tcatggagtg aaaaatgaat agtaaagtat tttcgcaacg ttttaatcgt gaattggcaa
      121 ctctgggatt ccccgaggat ttaacagaaa aaacgaaagc cgtatcaaaa gtatttggtg
      181 tcacacgcca tttggctaat gcaatgatat ttggccacgt tcttcctgat aaagaacaac
      241 tggataaaat cgcagaaatt ctggaagttt gtcctcaatg gctaagcggg gcaacggata
      301 ggaaaaaagc ctactcaggc cgtgagactg ctgatagtgt gtaataaacc tggaatttca
      361 tgtatactgt aagctaatag acagcgtttg ctaaaattat ttactttgca aacgcttttt
      421 tcattgttgg gttattaaaa tcatggaatg cttaagtttc tgtgtggcca aaaccataga
      481 cttgactcgt cttgatcttc atctaaaaaa cgtctctaag gaatttagtg ctgtaaaaac
      541 ccgagatgta ataagattaa attctcatag aaacaaagat cacaccctgt tcatttttaa
      601 aaatggaact gtcgtatctt ggggtgtaaa aagataccaa atccacgaat acctggatat
      661 tattaaactg cttgtagaca aacctgtagc acttttggtg catgatgaat ttcattatca
      721 aattggtgat aaaacagcca tagaaccaca tggtttttat gatgtggatt gcctgaccat
      781 tgaagaagac agtgatgaac taaagctcag tttgtcttac ggcttttctc aatctgtaaa
      841 attacagtat ttcgaaacca ttattgacgc attgattgaa aaatataatc cgctgattca
      901 ggccttatct cataaaggag aaatgcctat aagcagaaaa caaattcaac aagttattgg
      961 tgaaatttta ggtgccaaaa gcgagttgaa tttgattagt aatttcttat accaccccaa
     1021 atatttttgg caacacccca ctctagaaga gcatttttcc atgcttgagc gctatttaca
     1081 tatacaaaga cgcgtcaatg ccattaacca tcgtcttgat acgcttaatg aaattttcga
     1141 catgttcaat ggttatttgg aaagtcgcca tggccatcac ttggaaataa ttattattgt
     1201 attaatcgca gtagaaatta taattgcggt tatgaatttc catttttagg gtttttccct
     1261 taatttatgc ccactctaaa atcctatttt ctcaaagaca cctctttgcg cacggaaata
     1321 cttgctggag caacgacctt ccttaccatg gtttatatcg tttttgtcaa tccaaaggtc
     1381 ctgcacgatg caggaatgga tcaaggcgcg gtatttaccg ccacttgttt gataaccgct
     1441 ttcgcctgcg cattaacagg cttcatagcc aacacaccga taggtgtagc gccaagtgtg
     1501 gctttaaata tttatttctc ttacagcgta gtacaaggga tgggagttga ctggcaacac
     1561 gccttggcca tggtattcat ttccggcttg cttttcctgt ttcttaccct caccaaatta
     1621 agacgcctct tggttgaagc aatccctcat aatttacaaa tagccattgt tataggcatc
     1681 agtttgctaa tcgccttaat tgctttagaa aataatcaaa tcattattgg tgaccagcac
     1741 aatttaatgc gattaggatc tatcatcaga ccagaaacag gactcttttt cctggggttt
     1801 attcttattc ttactctgga ttatcataag attccaggtg ccatcatcat tgggatactg
     1861 agcatcagtg tcttaagctt gatattgggc ttgaccagtt ggcaaggttt gattgctatg
     1921 ccgccgtcgc ttgaacctac gtttttgcag ctcgattttt ctggtctttc cagtatcgtg
     1981 gctttaaaaa ccatttttac cttttttctg atcaccgtgt ttgatgcgac aggatcatta
     2041 attggcttac taagtccaac catttttaaa catgaaaaaa attattataa acgcctaact
     2101 cgcagtttaa ctgctgatgc agccgcatct tccctcgcag gcctaatggg ctcagccagt
     2161 acctcacctt atattgagtc agcaaccgga attgaagccg gtgggagaac cgggctaact
     2221 gcgttagtca ttgcaactgg atttattctg atgctgtttc tttttccact tgccaaaatg
     2281 attccaagct ttgcggttgg accggcttta ctctacgtag cgtgttgcat gataaaacat
     2341 attactaata tgaaattaca ggatatcacc gaaacagcgc cttgcatggt catcatcatg
     2401 atggtgccat tcaccgcttc gattgccgat ggaataggtt tgggaattat actttatacc
     2461 ctccttaaat tatttactcg tcaaaaaccc aatcctttga ttattgtttt aagtcttgtt
     2521 tttaccgttt tctttctgat taactaagtg agtgtgatct ttaaatccag gataagccgt
     2581 aaaacctcca taaaaaactt gtctgctctc aaaaactgca aacaaaagtt tctttaattt
     2641 attgaattta gtagtattta aataagtgaa ttatgcacaa gataggtcgt tatcttaaat
     2701 cgttcgttta atttttcgtg ccaaagcttc gagatgatac ttaggcatcg gatatcgaat
     2761 gcttcttata tagtacttgt ccataactca cgctagatag ccaaataact gccataagct
     2821 catagttggc ctaatcgcga tgaattatta tgcttgaaca atcattacga cattattatc
     2881 agcttgtctt ggtagatccc atactacctg ctttacgtga caggataacg ccattgtcca
     2941 ttacctggtt gtcgggaata tttggcttgt tgtttattcc ttttgtctta ttagacaaac
     3001 cttatattgc aattagcttt ctcttgcttt ctggatacct ggatactctt gatggttcgt
     3061 tggcccgctt tcaaaacaga gcctctgatt ttggctcagc aatggatatc gtcatagata
     3121 gaattgtaga attttctgct gttcttgctt tgtatctttt tgatccacaa caccgtgcca
     3181 ctttagccat tttaatgtta ggcagtattt tgctctgtat tacaagtttt ctggttgtgg
     3241 gaattttttc caacaatact actcaaaaaa gtttttatta cagcccgggg ataatggagc
     3301 gtgccgaagc atttctattc tttattttta tgacattatt ttccagctgc tttaattttc
     3361 ttgccgctct cttttgtttt ttagtctgtt taaccgcgtt gataaggctt tttgaattta
     3421 aaaaaagtgt acaggctcca agttagcgaa acaataagtt ttccgaagcc tgatttaaaa
     3481 ctttctctga ttttatgctg actacaatac aaaatcttgt ataatttaca gcaattcata
     3541 aaagaggctt acaatgttgc gtatcctttt gtattttctc ttactcatta atacaacatt
     3601 ttgtctggca aagactgaaa aagccatttt tgcaggtgga tgtttttggt gcatggaagc
     3661 agactttgac catcttcctg gagtcctgtc caccacatca ggatttgatg ggggcactct
     3721 taaagatcca acttatgaac aagtttccgc cgggaatacc cattacgccg aatcggtaat
     3781 ggtggagttt gaacccaata aattaagtta caaaaaactg gttgagtact tctttaggca
     3841 tattgatcct accgtcaaaa atgcgcaatt ttgtgatcat ggcagtcaat atcgcagtgc
     3901 aattttttat cttaacgatc aacaaaagaa aattgccatg gaatacaaaa aagagttaga
     3961 gcaaaaattc cccacagttt atacagaaat tgctccatca acttcttttt atccggcaga
     4021 agaatatcat caaaattatt acaaaaaaaa tcctatacgt tataagtatt atcgatatcg
     4081 ttgtggccga gatacccgaa ttcaagaggt ttggg
//
LOCUS       DACVWI010000231         4100 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.232, whole genome shotgun sequence.
ACCESSION   DACVWI010000231 DACVWI010000000
VERSION     DACVWI010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.232"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            68..2374
                     /locus_tag="JBH85_13510"
     CDS             68..2374
                     /locus_tag="JBH85_13510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HAU0947214.1"
                     /translation="MIDRNIVNLRLFRIYSKRYLKFDFVAAIVVFLVAIPLCLGIALA
                     SGAPLFSGILSGIIGGIVVGIFSGSQVSVSGPAAGMAAVVLAAISQLGDFNTFLLALT
                     LAGVLQLIIGALRAGFVADYVPSNVVQGLLCSIGILLIIKQLPLAFTLSSDFDELKTH
                     LLETTEGFTVSPLLALSQHINEGALIITTLSLAILIYFDITKNKILKEIPAPILVVLA
                     GILLNELFIWANSSLAQNSPQLVNIPDTNGFFQFFSHLEYPDWSAWANPKVYLYALVI
                     CIVASLETLLNLKASERLDKKRRHSPTNQELVAQGLGNITSGLVGGIPVTSVIVRTSI
                     NIHAGSKTKFSAVLHGFFILFAVMLIPGALNKIPLSSLAAILIYTGYKLNKPAIYINI
                     FSQGSDRFIPFIVTVISIIAFNLLAGILIGLAISLFYILKSNSQARIDIIKEIYPNGS
                     TYRLMLPQQMTFLNKAALVAELDTLPRRSQLIIDARHSQYIDKEILDLFNELKEELAG
                     SKQISLNFTGFQEHYKIHNYIDFITVTTYDVQTNLTPAQVLNILLEGNQRFLSDNRIH
                     RSNQIDIKYTAKTQHPIAVVLACIDSRVPVETIFDMSFGDLFCVRIAGNVINDDILAS
                     IEYACNVVGAKLIMVLGHTRCGAIQSACDGIEKGHITQLLSKIKPAVNAEKETTTERN
                     GKNQIFVNHVTELNVANTLQNIYKKSDILRTMIDSNEIGMVGAIYDVSSGKVSCKTYT
                     EELSTLDGDENKLLAQKFETILLEAKAS"
     gene            2461..>4100
                     /gene="lem3"
                     /locus_tag="JBH85_13515"
     CDS             2461..>4100
                     /gene="lem3"
                     /locus_tag="JBH85_13515"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T4SS effector phosphocholine hydrolase Lem3"
                     /protein_id="HAU0947215.1"
                     /translation="MKLRYIINENKLVFTSCNMRDKIITGKKVIFSQSVAKDQTKNLS
                     SFLSERFYSVNQSHNHSIIIGSSLSHQENDIEHDTILDTSGVLVTTDTNGLVNGARVA
                     ITDGLGGGNGDQEEDDEIYRVSHSSCENFLNCDQNMDTTLSLITQPKASDKKQTAPKT
                     LQHTEASMAAFIYQNHPGKGYIGEFANIGDGLIIILDKRFKIKHMVSACHIYRGFGTW
                     TPPSLQALATTANKDALLVRQTRTLAEGDIIISMTDGVWGELKTSLIAQTNDRRDIGV
                     DKEYFKTLFDELTDSPYPSSFDIAHIITSSAMSRSLERRKTLIKLINEIEQQHFHEKS
                     VKTINEVLEYFIKTGHVETAQTLKAILFEDGLSDGITYFENIEIPLEMVMHDLKSRTV
                     GDCSTINVTRIPYHLDELIRGFINYPEKHQILAPLFKARVKSEADLEEAFDRLSLEMV
                     QAEIECPISEAHFERAFKKETLDKTQAVLTHYFRISTGLDSKKNYQERLNDLSAYLSK
                     ESSLEKNDIKLLLSMLDSEIKPKTGVFQTLFGENQNKL"
BASE COUNT         1305 a          782 c          770 g         1243 t
ORIGIN      
        1 atcacattaa ctgtgacttt gtttcattaa cccgatactg aattcaaaat aaaggaactt
       61 ttagattatg attgatagaa atatagttaa cctgcgtcta tttcgtatct actctaaacg
      121 ttatttaaaa tttgattttg ttgccgcaat tgtcgttttc ctcgtggcga ttcctttatg
      181 cttaggtatt gccctggctt ctggcgcacc tcttttttct ggtatattaa gtggaatcat
      241 tggcggtatt gttgtgggta tatttagcgg ctcacaggta agtgtcagcg gacctgctgc
      301 gggtatggca gccgtcgtat tggcagcaat ctcgcaactt ggtgatttta ataccttttt
      361 attggctctt actcttgcag gtgttttaca actgataata ggtgcgttaa gagcaggatt
      421 tgttgcagat tacgttcctt ccaacgtagt acaaggcttg ctgtgttcaa tcgggatctt
      481 gctaatcatt aagcaattgc cactcgcatt caccctctca tcagactttg atgaacttaa
      541 aacgcattta ttggaaacaa ccgaaggatt tacagtaagc cctttgttgg ctttgtcgca
      601 gcatattaat gagggcgcac tcatcattac taccctttca ttggctattt taatctattt
      661 tgatataacc aagaataaaa ttctgaagga aatcccagcc cctatccttg tagttctggc
      721 aggaatactg ttaaatgaac tgttcatctg ggcaaactct agcctggcac aaaactcgcc
      781 tcaactggtt aatatcccag ataccaatgg ttttttccaa tttttcagcc atctcgagta
      841 ccctgactgg tccgcctggg ctaatcctaa agtctatctc tatgcactag tcatatgtat
      901 cgttgcttct ttggaaacat tgcttaatct caaagcgtca gaacgattgg ataaaaaaag
      961 aaggcacagc ccaactaacc aggaattagt tgctcaaggc ttgggtaata taacatcagg
     1021 cttggttggc ggtattcctg ttacatcagt cattgtcaga acatccatta atatccatgc
     1081 tggttcaaaa accaaatttt cagccgtact ccatggtttt ttcatcttgt ttgctgtcat
     1141 gttaataccc ggtgcattga ataaaattcc tttgtcttct ctcgcagcaa ttttaattta
     1201 cactggctat aaactaaata aaccagccat ctatatcaat atattttcac aagggagcga
     1261 tcgattcatt ccttttatag taaccgtgat cagtattatt gccttcaatc ttcttgcagg
     1321 tatattaata ggtctggcta tcagtctctt ttatatatta aaatccaata gtcaagctcg
     1381 catcgatatc attaaggaaa tttatccaaa tggttcaaca taccgtttga tgcttcccca
     1441 acaaatgact tttcttaaca aagctgcgtt ggtagctgaa ttggatacat tgcccagacg
     1501 ttctcaattg attatcgatg cgcgtcattc tcaatacatt gataaagaaa ttctggactt
     1561 atttaatgaa ttgaaagaag agttggcagg cagtaaacaa atttctttaa atttcaccgg
     1621 atttcaggaa cactataaaa ttcataacta catcgatttc attacggtta caacctatga
     1681 tgttcaaact aacctgacgc ccgcacaagt attaaacata ctgcttgagg gaaatcagcg
     1741 ctttttaagc gataaccgga ttcatcgatc aaaccaaatc gatataaaat acactgcaaa
     1801 aacacaacat ccaattgctg tggttttggc ctgtatcgat tcaagagttc ctgtagaaac
     1861 catctttgat atgagtttcg gtgatctttt ttgtgtccgc atagcaggca atgtgattaa
     1921 tgacgatatt ttggccagca tagaatacgc ctgtaacgta gttggtgcga agcttatcat
     1981 ggttctggga catacccgat gcggcgccat tcaatctgcc tgtgatggta ttgaaaaggg
     2041 tcatatcacc caattgctct ctaaaattaa gcctgcagtt aatgcagaaa aagaaactac
     2101 aacagaacgt aacggaaaaa atcaaatttt tgtaaatcat gtcactgaat taaatgttgc
     2161 gaatacctta cagaacattt ataaaaaaag tgatatttta cggactatga ttgacagcaa
     2221 tgagataggg atggttggtg ctatttatga tgtaagcagt ggaaaagtga gctgtaaaac
     2281 atataccgaa gagttatcca ctttggatgg agatgaaaat aagctcctgg ctcaaaaatt
     2341 tgaaaccatt cttttagaag ccaaagcaag ttaaactttt ttgaaattgt aaaaacaccg
     2401 gaaagaaata aatttctcaa gccaggtata agattttcta caagtcatta agcctggcgt
     2461 atgaagttac gctatattat taatgagaat aagcttgttt ttacgagttg caatatgaga
     2521 gataaaatta tcactgggaa aaaagttatt ttttcacaat ccgttgcaaa agaccaaaca
     2581 aaaaatttat caagcttttt atcagaacgg ttttactctg taaatcaaag ccataatcat
     2641 tccattatta tcggttccag tctttctcac caagagaatg atatcgaaca cgataccata
     2701 ctcgatacat caggtgtgtt agtgactact gatacaaatg gcctcgttaa cggggcaaga
     2761 gtcgcaatta ctgacggtct gggtggtgga aatggcgatc aagaagaaga cgacgagata
     2821 tacagagtat ctcattccag ttgcgagaat tttttgaatt gcgaccaaaa tatggatacg
     2881 actctaagct tgattaccca accaaaggcc tctgataaaa aacaaacagc accgaaaacg
     2941 ttgcagcata cagaagcgtc gatggctgct tttatttatc aaaatcatcc gggaaaagga
     3001 tacataggtg agtttgcaaa tattggtgat ggactaatta ttatcctgga taaacgtttt
     3061 aagataaagc atatggtatc cgcatgccat atatatcgcg gatttggtac ctggactcca
     3121 ccttccctgc aagccctggc aacaactgca aataaagacg ccctgcttgt caggcaaaca
     3181 cggacacttg cagaaggcga tattataata tcaatgacag atggggtttg gggggagctg
     3241 aaaaccagtt tgattgctca aacaaatgac cgtcgagata taggagtgga taaagaatat
     3301 ttcaaaacgc tatttgacga attgacagac tccccctacc cttcttcatt tgatattgct
     3361 cacatcatta ccagtagcgc aatgtctcga agtttggaac gcagaaagac attaataaaa
     3421 ttaattaatg aaatagaaca acaacacttc catgaaaaat ctgtcaaaac cattaatgaa
     3481 gtcctggaat attttattaa gacaggccat gtggaaacag cacagacatt aaaagcaatt
     3541 ctctttgaag acggtttgag tgatggaata acttattttg aaaatattga aatcccgctg
     3601 gagatggtaa tgcacgattt aaaaagtcgt accgtcggtg attgttcaac catcaatgta
     3661 acgcgcattc cctatcattt agatgagctc atacgaggtt ttatcaatta ccctgagaaa
     3721 catcaaatcc tggcgccact atttaaagca agggtaaaat ctgaggctga tttagaagag
     3781 gcatttgatc gcctgtcact tgaaatggta caagctgaaa tcgagtgccc aatttctgaa
     3841 gctcattttg aacgtgcttt taaaaaagaa acccttgata aaactcaggc tgtcttaact
     3901 cactattttc gtatttcgac tggtttagat agtaaaaaaa attatcagga acgattaaat
     3961 gatctgagtg cttacttatc taaggaatcc tctctcgaaa aaaatgatat taaattgcta
     4021 ttatctatgc tagatagtga aataaaacct aaaaccggag ttttccaaac attgtttggg
     4081 gaaaaccaaa ataaattata
//
LOCUS       DACVWI010000232         4099 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.233, whole genome shotgun sequence.
ACCESSION   DACVWI010000232 DACVWI010000000
VERSION     DACVWI010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4099
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.233"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            75..2018
                     /locus_tag="JBH85_13520"
     CDS             75..2018
                     /locus_tag="JBH85_13520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional virulence effector protein DrrA"
                     /protein_id="HAU0947216.1"
                     /translation="MSIMGRIKMSVNEEQFGSLYSDERDKPLLSPTAQKKFEEYQNKL
                     ANLSKIIRENEGNEVSPWQEWENGLRQIYKEMIYDAFDALGVEMPKDMEVHFAGSLAK
                     AQATEYSDLDAFVIVKNDEDIKKVKPVFDALNNLCQRIFTASNQIYPDPIGINPSRLI
                     GTPDDLFGMLKDGMVADVEATAMSILTSKPVLPRYELGEELRDKIKQEPSFSNMVSAK
                     KFYNKAIKDFTAPKEGAEVVSVKTHIMRPIDFMLMGLREEFNLYSEDGAHLSAPGTIR
                     LLREKNLLPEEQIARIESVYNQAMSKRFELHAEHKKEHDEMPYSDAKAMLDEVAKIRE
                     LGVQRVTRIENLENAKKLWDNANSMLEKGNISGYLKAANELHKFMKEKNLKEDDLRPE
                     LSDKTISPKGYAILQSLWGAASDYSRAAATLTESTVEPGLVSAVNKMSAFFMDCKLSP
                     NERATPDPDFKVGKSKILVGIMQFIKDVADPTSKIWMHNTKALMNHKIAAIQKLERSN
                     NVNDETLESVLSSKGENLSEYLSYKYATKDEGREHRYTASTENFKNVKEKYQQMRGDA
                     LKTEILADFKDKLAEATDEQSLKQIVAELKSKDEYRILAKGQGLTTQLLGLKTSSVSS
                     FEKMVEETRESIKSQERQTIKIK"
     gene            complement(2185..2904)
                     /locus_tag="JBH85_13525"
     CDS             complement(2185..2904)
                     /locus_tag="JBH85_13525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HAU0947217.1"
                     /translation="MVDYHYFKSKLNHFYGRYVGYNQRPVFFDIDQTFPELNHITRHF
                     PDIKREFENVQANVKEFPRYHDIDPGESAISNTTEKNWNVFMLYLLGYQLKEARLLCP
                     ELCNLLEGIPHLIQAFFSILEPGKSIPLHEGPYIGYLRYHLGIHVPQNNPPQILVNNQ
                     TYTWKEGEAVLFDDSWPHEVRNTSDDYRAVLIIDVLRPMPFLPQLVNQFVTHVIARYF
                     YGRKVMKRAMQYGGEVKPLAL"
     gene            complement(3168..>4099)
                     /locus_tag="JBH85_13530"
     CDS             complement(3168..>4099)
                     /locus_tag="JBH85_13530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0947218.1"
                     /translation="SKQENIISHNTDSSLLNTVMQQMKERIINEGDKPHVTVETQLKI
                     LQELSQFGFGQFLIKNQGINGYWTHYMLTHPWFGRKTGLNNSREPLSNMECFLLDKAP
                     TMLATQQRFELFLQENQKALVNGATLASIPCGMLGELLYLDFNGINNIQLMGIDYDQA
                     ALEDANALAKERNLDRFTTLVCRNAWELNIQEEFDLISSNGLNIYEPDDNKVLDLYQQ
                     FHTALKKGGKLVTSFLTPPPHLSSQCEWIFNKINPEDLLLQRIIFSDILNAKFQCYRS
                     SQQTQKQLALAGFKNIHFLYDEAHLFPTVIAEK"
BASE COUNT         1359 a          661 c          834 g         1245 t
ORIGIN      
        1 accaaatgat atacttaatt acaagtagag aggtattatc tatcttatct gaagacttat
       61 gaatcctcga gtacatgagc ataatgggga gaattaaaat gagtgttaat gaagagcaat
      121 ttggtagttt atacagtgat gagcgagaca aaccattact atccccaacc gctcagaaaa
      181 aatttgaaga atatcagaac aaattggcta atctaagtaa aataattcga gaaaatgagg
      241 gcaatgaagt atctccatgg caggagtggg agaatggatt acgtcaaatt tacaaagaaa
      301 tgatttatga tgcctttgac gcgcttggtg tcgagatgcc gaaagatatg gaagtccatt
      361 ttgcaggttc tcttgccaag gcacaagcca ctgagtatag tgatttggat gcctttgtta
      421 ttgttaaaaa tgacgaagat ataaaaaaag taaaaccggt ctttgacgca ttaaataatt
      481 tatgtcagcg tatttttact gcaagcaatc agatatatcc tgatcctatt ggaatcaatc
      541 caagccgtct tattggtacg cctgatgatt tgtttggtat gttaaaagac gggatggtag
      601 ctgatgttga agcaactgca atgtcaattt taacatcaaa acctgttcta cctcgctatg
      661 aattaggaga agagttacga gataaaatca aacaagaacc ttctttcagc aatatggttt
      721 cagccaagaa gttttataat aaagcaatta aagactttac tgcacctaaa gagggtgcag
      781 aagtagtgag tgtcaaaact catattatgc gtcccatcga ttttatgctg atgggattgc
      841 gtgaggaatt taatttatac agtgaggatg gagctcatct ttcggcacca ggaactatac
      901 gtttattacg tgaaaaaaat ttattgcccg aagagcaaat tgctcgaatc gagtcagtat
      961 acaatcaagc gatgagcaag agatttgagt tgcatgctga gcacaaaaaa gaacatgatg
     1021 agatgcctta ttctgatgct aaagcaatgc ttgatgaggt agcgaaaata agagagctgg
     1081 gtgttcaacg tgtcacaagg attgaaaatc tggaaaatgc caagaagttg tgggacaacg
     1141 cgaatagcat gcttgaaaag ggtaacatca gcggatatct taaagcagcg aatgagcttc
     1201 ataaatttat gaaggaaaaa aatcttaagg aagatgattt aaggccagag ttgagtgata
     1261 aaacaatatc tccaaaagga tatgctattt tacaatcttt atggggagca gcttcggatt
     1321 atagtagagc ggctgcaact ctcacagaat caacggtaga gcctggttta gtatcagctg
     1381 ttaacaaaat gtcagcattc tttatggatt gtaaattaag tccaaatgag cgagcaaccc
     1441 ctgatccaga ttttaaggtt gggaaatcta aaattttagt aggtataatg caattcataa
     1501 aagatgtagc agacccaact tcgaaaatat ggatgcataa tacaaaagct ttgatgaatc
     1561 ataaaattgc tgctattcaa aaacttgaga gaagcaataa tgttaatgat gaaacattag
     1621 agagtgtgct gagctctaaa ggtgaaaatt tatccgaata tctttcttat aaatacgcaa
     1681 caaaagatga aggaagagag caccgctata cggcaagcac ggaaaacttt aaaaatgtta
     1741 aagaaaaata tcagcaaatg cgaggtgatg ctttaaaaac agaaatcctg gctgatttca
     1801 aggataaact ggctgaagct accgatgaac agagccttaa gcaaattgtt gctgaattga
     1861 aaagtaaaga tgaatataga attttggcta aggggcaagg gttaacaacc cagcttttag
     1921 ggttaaagac aagttcagtg tcttcatttg agaaaatggt tgaggaaaca agagaaagta
     1981 ttaagtctca agaaagacaa accattaaga taaaataacc agcgcatttc aattatgaag
     2041 atatgcttat atcgctcttt ttagtataga gaaagactga taagagctaa ttcaacaagg
     2101 gttgaaccta aagttcaact tttctttttt tattgattga taaatatttt aaacgatttt
     2161 cgaaagataa taatcgttgt ttacttaaag tgccaaaggc tttacttctc caccatactg
     2221 catcgcgcgt ttcattactt tgcgaccata aaaatatcga gcaatgacgt gggttacaaa
     2281 ttgattgacc agttgcggca agaagggcat agggcgcaag acatcaatga ttaatacggc
     2341 acgataatca tcactggtat ttcttacttc atgtggccag gagtcatcaa aaagtactgc
     2401 ttctccttct ttccaggtat aagtttggtt attaactaaa atttgtggtg gattgttttg
     2461 gggaacatga attcctaaat gatatcttag atagccaata taggggcctt catggagggg
     2521 aatagatttt ccaggttcta aaatcgagaa aaaagcttgt ataagatggg gtattccttc
     2581 caataaatta caaagttccg ggcataataa acgtgcttcc ttgagttgat aaccaagaag
     2641 atacagcata aaaacattcc agtttttttc tgtagtgttt gatatggcag actctccggg
     2701 atctatgtcg tggtagcgtg gaaattcttt tacattcgct tgtacatttt cgaattccct
     2761 tttgatatcg ggaaaatggc gtgttatgtg atttaattct gggaaagttt gatcaatatc
     2821 aaaaaaaacc gggcgttgat tatatcctac atagcgccca taaaagtgat tcaatttact
     2881 cttgaaataa tgatagtcta ccattgctta ttcctttatt ttatttgtga taataatcag
     2941 gtgccgaatg ttcgactatc cttgggaaaa tcagctattt taaaatgaag tttgaagaaa
     3001 tggaagttta aaaaatgctc gtttctgtgc cgaggtatcc tttcaggttt tggaaatgat
     3061 ttttggcatc cagcttattc caagtaagca tattctcaat ggcagtcatc atataatatt
     3121 tatcgctatg gcttaaaaaa atacggataa caatttcctt tttcttgcta tttttcagct
     3181 attacggttg ggaagagatg agcttcatca tatagaaaat gaatattctt gaagcctgcc
     3241 aaggcgagtt gcttctgggt ttgttgcgat gagcgataac actggaattt tgcatttaaa
     3301 atatcggaaa aaataattct ctgcaataat aaatcttctg ggttaatttt attgaatatc
     3361 cattcgcatt gtgaactcag gtgaggggga ggagttaaaa aactggttac taacttcccg
     3421 ccttttttta aggctgtatg aaactgctgg tataaatcca gaactttgtt atcgtctggt
     3481 tcataaatat ttaacccatt gctggaaatg agatcaaatt cctcttgaat attaagctcc
     3541 caggcattac gacaaacaag cgttgtgaat ctgtccaggt ttcgttcttt tgccaaggca
     3601 ttggcatcct ctaatgctgc ctggtcataa tctataccca tcagttggat gttgttgatg
     3661 ccattgaaat caagataaag taattcccct aacatcccac aggggataga agcaagggtt
     3721 gcgccattaa ccagagcttt ttgattttcc tgcaaaaata attcgaaacg ctgttgggtt
     3781 gctaacattg ttggtgcttt gtccaacaag aaacattcca tgtttgataa tggctcacga
     3841 ctattgttta atcccgtctt tcttccaaac caaggatgag tcaacatata atgagtccaa
     3901 taaccattga taccctgatt ttttattaga aattgaccaa acccaaattg gcttaattct
     3961 tgaagaatct taagttgagt ttctaccgtg acatgtggct tatcaccctc gtttattatt
     4021 ctttccttca tttgctgcat tacagtattc agaagagatg aatcggtgtt atgagaaatg
     4081 atattttctt gttttgaca
//
LOCUS       DACVWI010000233         4093 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.234, whole genome shotgun sequence.
ACCESSION   DACVWI010000233 DACVWI010000000
VERSION     DACVWI010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4093
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.234"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..223
                     /locus_tag="JBH85_13535"
     CDS             <1..223
                     /locus_tag="JBH85_13535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947219.1"
                     /translation="SKFLVFIGSILFFSSVLAGDIPEVDIQDQQSDQELCAQKFYNQC
                     INKCEKTNYGDCTQACEENAKNQCLYAGE"
     gene            353..925
                     /locus_tag="JBH85_13540"
     CDS             353..925
                     /locus_tag="JBH85_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HAU0947220.1"
                     /translation="MLHNTKINKLAVFCGSNTGYSEVYKQSAENMADVLSSNGITLVY
                     GGSKSGLMGIIANRMLKNGSNVIGVIPKSLVDTEKAHDGLTELHVVNSMYERKILMCK
                     LSDGFILLPGGSGSLDEFFEMFTLVQLGYHKKPCCVLNASGYYDYLLQFLDYAVNQGF
                     LRSKDRNALIVNQYPDTLIENLFEVINNRK"
     gene            965..1702
                     /locus_tag="JBH85_13545"
     CDS             965..1702
                     /locus_tag="JBH85_13545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HAU0947221.1"
                     /translation="MPKKLLIAALLCNIFCNPSHLYASSTEIPILGKTMTQAKQQQMT
                     PKQALQRLKDGNQRFLSNQPLARDYLKQAKQSAYGQYPFAVILNCMDSRSVPEFFFDQ
                     GLADLFTLRVAGNVLNDDILGSMEFATKVVGARLVVVLAHTSCGAVAGACKDVKLGHL
                     TDVINKIQPVVKPSMESTGIDNCSDPKLIDDMAKANALHVVKNILEQSPILNELVKNK
                     QIGIVAGLHDIKTGKVTFFEEKRSVPE"
     gene            1787..3019
                     /locus_tag="JBH85_13550"
     CDS             1787..3019
                     /locus_tag="JBH85_13550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HAU0947222.1"
                     /translation="MTFYMPKSHNSIIFLGLLSAFSLLTFDLYQPSLPFITNYFNITP
                     SMGQLTLSIYLLVYGITHLLWGPLIDHFGRRRLLPGNLLLALIGSLMCAFAPNITMLI
                     CGRALQGFALCCANLIAYSAARDFEDTIVRAKVLSYISMTVSVSPIIAPVIGALIFHH
                     FGWQANFIVMAIVACILLIQTKLSLLESPFWTPPQERFSVKKILQEYKSILNIPSLWC
                     ASFILMFGISAVMLTVINSSYLIIEVLNYSPLAYGLIFILNGLNIIFGNYLGIWLRDR
                     LPIITTIYLGNWFIVLGGTAMLVTSKLFGFSLLALSFSLIANLGISVSAAPTISIALT
                     DFKQNAGIVMAFMNTIRLIGPSLLTILTGYLLTRNLDALPLGLIGSGIGALFFSWHFS
                     RLTTESRNSDMDSEEALT"
     gene            complement(3016..3264)
                     /locus_tag="JBH85_13555"
     CDS             complement(3016..3264)
                     /locus_tag="JBH85_13555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947223.1"
                     /translation="MGVTVTNIGLLPFNTQYSHLKWKKSYFCTSRQNADIPVLLNVLT
                     LNEQLMFCFTFTEPMCGSVFQENYIKNFISNMGKLTDC"
     gene            complement(3672..3992)
                     /locus_tag="JBH85_13560"
     CDS             complement(3672..3992)
                     /locus_tag="JBH85_13560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947224.1"
                     /translation="MKPLSRKLGYWEELCQWRTILIYDQHGNSHEILLIAGHNIGDGV
                     SVAYFFHTLFRIYHKSDSNPSLPLYPPVEELVQHKKGKNLLCLLHFCLLRFITRIMSL
                     LASE"
BASE COUNT         1218 a          795 c          766 g         1314 t
ORIGIN      
        1 gagcaaattc ctcgtattta ttggatcaat attatttttt tcttccgttt tagctggaga
       61 tatcccagaa gtagacatac aagatcaaca gtcggatcag gaattatgcg cccaaaaatt
      121 ttataatcaa tgcatcaaca agtgcgaaaa aacaaattat ggcgactgta ctcaagcctg
      181 tgaggaaaat gctaaaaatc aatgtcttta cgcaggtgaa taagaatggt ttgcattgag
      241 gcaattaaat taaatcctat aaattttaat aatgaaaata ttaactcatt aaaaataaac
      301 tgtatttcct catttcatgt tataaataaa acattgcatc tggaatttta aaatgctcca
      361 taatactaaa ataaacaaac tcgctgtctt ttgtggatct aacactggtt attctgaagt
      421 ctataaacaa tcagctgaaa acatggccga tgtcctaagc agtaatggta ttaccctggt
      481 ttatggtggc tcaaaaagcg gtttgatggg aataatagcc aatcgcatgt taaaaaatgg
      541 ctctaatgtc attggtgtta taccaaaatc tctggttgac acagaaaaag cacatgatgg
      601 gttgacggaa ttacatgttg ttaattctat gtatgaaaga aaaatattga tgtgtaaatt
      661 gtcggacggg ttcattctgc tgccaggtgg gtcaggttct ctggatgagt tttttgaaat
      721 gtttaccctg gtacaattag gataccataa aaaaccttgc tgtgtactca atgcctctgg
      781 ttactatgat taccttttgc aatttttaga ctatgctgtt aatcaaggtt ttttacgctc
      841 aaaggatcga aacgcgctca ttgtcaatca atatccagat acgctcattg agaatttatt
      901 tgaagtaatc aataatcgca aataacaatt taggaaaatt aataacataa caaggagtta
      961 accaatgcca aaaaaactgc tcatcgctgc tttattatgc aatatttttt gtaaccccag
     1021 ccatctctat gcctcatcaa cagaaatacc catacttggg aaaaccatga cccaggctaa
     1081 acaacaacaa atgactccca agcaggcatt gcaacgttta aaagacggta atcaacgctt
     1141 cctcagtaat caacctttag cacgagatta tctaaaacaa gccaaacaat cagcttatgg
     1201 ccaatatcct tttgcggtca tcttgaattg tatggactcg cgcagtgttc ctgaattctt
     1261 ttttgatcaa ggattggcag acctgtttac cttacgtgtt gctggcaatg ttctcaacga
     1321 tgacatttta ggaagtatgg aatttgcaac aaaagtagtg ggagcacgtt tggtagttgt
     1381 cctggctcac acctcctgtg gggctgttgc aggagcatgc aaagatgtta aattagggca
     1441 tttgactgat gttataaata aaatccagcc tgttgtaaaa cccagcatgg aaagcacggg
     1501 cattgataat tgctctgacc ccaaactgat tgatgacatg gctaaagcca atgctctgca
     1561 tgttgtaaaa aatatactag agcaaagccc cattttaaat gaactagtta agaataaaca
     1621 aattgggatt gtagcgggtc ttcatgatat taaaacaggt aaggtgactt tttttgaaga
     1681 aaagcgatct gtcccagagt aaagcatgtt ggcagttgcc aacttgcttt aatatttcct
     1741 ttcaaatgca agctgaattt ggttacaatc gcataatttt tggtgaatga ctttttatat
     1801 gcctaaatca cataattcca ttatatttct tggtttgctt tctgcgtttt ctttgcttac
     1861 atttgatctt tatcaaccat cactgccttt cataacgaat tattttaata ttaccccaag
     1921 tatggggcaa ttaaccctaa gtatttattt gctagtttat ggtatcacgc atcttctatg
     1981 gggaccactt atagaccatt ttgggcgccg gcgcctactt cccggaaacc ttttattagc
     2041 cttaattggc agtttaatgt gtgcttttgc accgaatatc accatgctta tttgcggtcg
     2101 tgccctacaa ggattcgctt tatgctgcgc caatctcatt gcctattccg cagcacgtga
     2161 ttttgaagac acgattgttc gcgccaaagt gctgtcctat atttccatga ccgtttcagt
     2221 ttcaccgatt atagccccgg taattggtgc tcttatcttt catcattttg gctggcaagc
     2281 caattttata gtcatggcaa tcgttgcctg tattctattg atacaaacca aactctcctt
     2341 gctagagtcc cctttctgga ctcctcccca ggagaggttc tcggtaaaaa aaatactcca
     2401 ggaatataag tccatactca atataccctc tctatggtgc gcatcattta ttttaatgtt
     2461 tggcatttct gctgtcatgc tcactgtaat taattcctct taccttatca tcgaggtact
     2521 gaattactct ccacttgcct atggacttat ttttattctg aatggtttaa atattatttt
     2581 tggaaactat ctgggcattt ggcttcgtga ccgattaccc attatcacca ccatctattt
     2641 ggggaactgg ttcattgtcc ttggtggtac agcgatgttg gttacttcca aattgtttgg
     2701 atttagtctg ttagcattgt cattttcatt aattgccaac ttgggaatta gtgtcagtgc
     2761 cgctccaact atctccatcg ccctaacgga ttttaagcaa aatgcaggaa tagttatggc
     2821 ttttatgaat accatacgtt taatcggccc ctctctttta actattctaa ccggctattt
     2881 gttgacaagg aatcttgacg cgcttccact gggattaata ggctcaggaa ttggagccct
     2941 ctttttctca tggcatttta gccgattgac cactgaatcg agaaactcag acatggatag
     3001 cgaagaagcg ttgacctaac agtctgttaa cttccccata ttggatataa aattttttat
     3061 ataattctcc tgaaacacag agccacacat tggttctgtg aaggtaaagc aaaacatgag
     3121 ttgctcatta agagtaagaa cattgagcaa aacaggtatg tctgcatttt gccgggatgt
     3181 acaaaaatag ctttttttcc atttcaaatg actatattga gtattaaaag gtaacaaacc
     3241 aatattggtt acggtcactc ccattgaaaa gcgatcccta tgaccttccc atgatgacag
     3301 agcatcaata atatcctgct tactatgatg aactggaaat atagcgtcac cgggcaatcg
     3361 ctcttgtttt aactgatgat cataatccct ggccagctct ataatatctg attctatact
     3421 gacttgttta tgatatgtag tcaccacaga cacatagcat ccaaaatagt ccaccggaat
     3481 cacaggtata caccatttcc ttaaattaac aggggtgtgt agtgttttat cttaaggttg
     3541 atcgagaact tttgttaatg tcattaggga cagcgcatta attaatgcat tcagagaaaa
     3601 gttgtgattt ttactaaaag ccagaagcac tccggtttgt ttcactctaa caggataata
     3661 atgatttttt gttattcgct cgccaggagg gacataattc tggtaataaa tcggagtagg
     3721 caaaaatgta ggaggcagag aagatttttg ccttttttgt gttgcaccag ttcctcaaca
     3781 ggaggataga gaggtaagga tggatttgaa tcacttttat ggtaaattct aaagagagta
     3841 tggaaaaaat aggctaccga gacgccatct ccaatattat gtcctgcgat taacaggatt
     3901 tcatgagaat taccgtgttg gtcataaata agaatggttc gccattgaca tagctcttcc
     3961 caatagccta gttttctgga tagcggtttc atagattttc tcccgaagcc ctggtcatga
     4021 ttctggaaag ttccttttac agagagcaat ttccatacta caggacatat accagcttaa
     4081 ttacttttga tgg
//
LOCUS       DACVWI010000234         4020 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.235, whole genome shotgun sequence.
ACCESSION   DACVWI010000234 DACVWI010000000
VERSION     DACVWI010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.235"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            16..894
                     /locus_tag="JBH85_13565"
     CDS             16..894
                     /locus_tag="JBH85_13565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAU0947225.1"
                     /translation="MKRGENMLKRLLGVASLFLILNHQCFAEDHEIAITIDDLPFVGS
                     GTNTPGNLKRTQERFMAIVNTLVDNQVPATGFAIGGAIAKNEWELLEIFRNQGFSIGN
                     HTYKHRSLNSMTAENYIADIEKADTVLSPVMTEPKYFRYPYLAEGSGEKKQKVHEWLA
                     AHQYTIAPVTIDSKDYEFNAQFYRIPYRQRPQRLAQFKKRYLAFIWQQTLRAEKKVKK
                     VEGQPVKHILLIHANLINSLCLADIIEMYRSNGYKFITLQEALKGNTATPVNDSSPTE
                     ALKSETEKKEINEPQS"
     gene            complement(1011..2204)
                     /locus_tag="JBH85_13570"
     CDS             complement(1011..2204)
                     /locus_tag="JBH85_13570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947226.1"
                     /translation="MKSKLIYLTVALAAIILSAAVWWLQSPKPTFRQVSFKHLPGWEN
                     AQLKKSLETFQTSCRAFLKQNPERVVGTEQIDLQAKDWHPACRAALKINPVDEQSAKV
                     FFEKWFAPVEFYDDKPVKGLFTGYYMPLIKGSYTKSKEFSVPIYELPSNLVTVDLGLF
                     LPNLKNKKIIGRIAGNKVVPFYTREQINKGAIKDTARVLVWINSPVDRLFLEIQGSGI
                     IELEDGKRIFIGYDGQNGAPYTAIAGVLIKKGIMTKHNASMQRIKKYLEAHPKQMDKI
                     INQNKSFVFFRKLSLEAALGSQGVALTPGYSLAIDKQWIPMGAPLWLNTTRPDSKNPD
                     VNKPMQRLMIAQDTGGAIRGKVRGDVFWGGGDKATLIAGHMKNEGHYWLLLPAHALSR
                     LAQLK"
     gene            complement(2314..2871)
                     /locus_tag="JBH85_13575"
     CDS             complement(2314..2871)
                     /locus_tag="JBH85_13575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947227.1"
                     /translation="MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQFKALNSQETF
                     HQNFYQLEHWMMQLARSPLLYAGMDCYLQKDYGANKIANELVNNKGCVLILNQKKYRY
                     FIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESTVMQLRFIKLGSNLSSCPEG
                     EIQVKEGVSSWRYLPDYKNFEILTG"
     gene            complement(2868..3674)
                     /locus_tag="JBH85_13580"
     CDS             complement(2868..3674)
                     /locus_tag="JBH85_13580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947228.1"
                     /translation="MLRGLKKASQLFAPMIWMLIEMGRQTGFSLSEMLISLFLASIIT
                     ITLTQFYIRSKSQYLKTQEQLEINFDLLWIGDLLSDSIRKAGFTPCVSVEKLKTFDSR
                     HAERKIINFQIENMPQVQLRINRMSDVYTEVANFMSPTQIVIEESVISNIKHPLIISD
                     CRQGEVHTVSKIDKLSNGYQITLKKPMQFRYDEITYLGEWLEETWFTKQNEKGEKTLH
                     YKLFQTEELSPFIHEFYVTRRLIKQRSVLDFSIGSDKETLRKISVSVRNL"
     gene            complement(3613..3927)
                     /locus_tag="JBH85_13585"
     CDS             complement(3613..3927)
                     /locus_tag="JBH85_13585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HAU0947229.1"
                     /translation="MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRI
                     QGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQKKIILNVTWFKKSQSIIRSYDLD
                     AH"
BASE COUNT         1287 a          779 c          665 g         1289 t
ORIGIN      
        1 aagaaatttt ccaaattgaa aagaggggaa aatatgttaa aacgtctact cggtgtagca
       61 tcattatttt taatattgaa ccaccaatgc ttcgctgaag atcatgaaat tgccattact
      121 attgacgatt taccttttgt gggctctgga acaaatactc caggaaatct gaagcgaacc
      181 caggaaagat ttatggccat agtgaacact ttggttgaca atcaggttcc tgccacaggt
      241 tttgccatag gaggggctat agcgaaaaat gaatgggagc ttctggaaat ttttcgtaat
      301 caaggttttt caattggcaa tcatacctat aagcatcgaa gtttaaattc aatgactgca
      361 gaaaattata ttgctgatat cgaaaaagcg gataccgttc tatcccctgt tatgactgag
      421 ccaaaatatt tccgttatcc ttatcttgct gaaggcagtg gagaaaagaa gcaaaaagtg
      481 catgagtggc tggctgccca tcaatacacg attgctcctg tcactataga tagcaaagat
      541 tatgaattca atgcgcaatt ttatagaata ccatatagac aaagaccaca acgtttagct
      601 caatttaaaa aacgctatct tgcttttatc tggcaacaga ccctgagagc agaaaaaaaa
      661 gtcaagaaag tagaaggaca acctgttaaa catattttac tcatccatgc gaatctgatt
      721 aatagtttgt gtttggcgga tatcattgaa atgtatagaa gcaacggtta taaattcatt
      781 actctgcaag aggctctaaa agggaataca gctactccag ttaatgattc atcaccaact
      841 gaagctttga aatcggaaac cgaaaagaaa gaaattaatg agcctcaatc ttaaaaacat
      901 agagttattt cttgaaacaa atgatttaca atgctatccg ggattcattg tcacaggact
      961 ggtgaatccc aatagccaaa taaaaaattg caaagacagg acttacgccc ctacttcaac
     1021 tgtgccaagc gcgataatgc atgtgccggc agaagaagcc aataatgacc ctcgttcttc
     1081 atatggccag caatcaaagt agctttgtca ccaccacccc aaaatacatc acctcttact
     1141 ttaccacgaa tagccccacc agtgtcttga gctatcatca aacgttgcat aggtttattg
     1201 acgtcaggat ttttactatc tggtcttgta gtgtttaacc acagaggcgc tcccattggt
     1261 atccattgtt tatcaatagc aagagaataa ccgggtgtta atgccacacc ctgtgaacct
     1321 aaagccgctt ctaatgacaa cttgcggaaa aaaacaaatg atttattttg attgattatt
     1381 ttatccattt gtttgggatg agcttccaga tactttttaa tcctttgcat ggaggcattg
     1441 tgcttggtca taataccttt ttttatcagt acaccagcaa tagcagtata aggagcacca
     1501 ttttggccat catagcctat aaaaattcgt ttaccatcct caagctcaat gattcctgag
     1561 ccctgaattt ctaaaaataa cctgtcaaca ggactattga tccagaccaa aacacgagct
     1621 gtgtctttaa ttgccccttt attaatttgc tctcgagtgt aaaatggtac gactttatta
     1681 cctgcaattc gtccaatgat tttcttgttt tttaaattag gaagaaataa acccaaatca
     1741 acagttacca gattactagg taattcataa ataggaacac taaattcctt tgatttggta
     1801 taactgcctt taatcaaagg catataatag cccgtaaata aacctttcac tggtttatca
     1861 tcatagaatt ccacaggggc aaaccacttc tcaaaaaata cttttgctga ttgttcatca
     1921 acaggattta tttttaaagc agcacgacag gctggatgcc aatcttttgc ttgtaaatca
     1981 atctgctctg tgccaacaac acgttcagga ttttgtttta gaaaggctcg acaagatgtt
     2041 tgaaaagttt ctaacgattt tttaagttgt gcattctccc acccaggtaa atgcttaaag
     2101 cttacctgcc tgaaagttgg tttgggagat tgcaaccacc acactgctgc gcttaagata
     2161 attgcagcca aggctactgt cagataaatt aatttcgatt tcataggagg tcaattttta
     2221 cacgtgatgg agaaaaatgc aactaaaaat tattgttatt agtccatctt actacaaaaa
     2281 acatccggtt ataatagctt tttttcaata atttcaacca gttaatattt caaaattttt
     2341 ataatctggc aagtatctcc agctgcttac cccttccttc acctgtattt ccccctctgg
     2401 acaagaggac aaattgctac ccaatttgat aaaccttaat tgcatgacag tagattcgcc
     2461 atgctcctcg tcttgtaata cggtgaatct aaaatggtga gaagcatatt tttgcccatc
     2521 cttattaaga accaaacaag aaaattcatt caggtcctca ataaaatatc tgtatttttt
     2581 ctgatttaat atgagcacac atcctttatt gttaactaac tcgtttgcta ttttattagc
     2641 tccataatcc ttttgcagat aacaatccat acctgcatac aataacggtg aacgagcgag
     2701 ttgcatcatc caatgttcca actgatagaa attttgatga aatgtctcct gtgaattgag
     2761 tgctttgaat tgcaagaata tctgctggag gcttgccaaa accaataagc tcatcaagaa
     2821 agttatacag agcgtcatta aaagaatgaa accggaatcg gtttttttca taaatttcgt
     2881 accgaaacac taattttgcg tagcgtttcc ttatcgctac caattgaaaa atccaatact
     2941 gacctctgtt taataagacg tctggtaaca taaaattcat gaatgaatgg acttaattct
     3001 tctgtttgaa acagtttgta atgtaatgtc ttttcaccct tttcattttg tttagtaaac
     3061 catgtttctt caagccactc tcccaagtaa gtaatttcgt cgtatcgaaa ctgcattggt
     3121 ttttttaaag taatttgata tccattactt agtttatcta tttttgaaac cgtatgtact
     3181 tctccttgcc ggcaatcaga aataattaat gggtgtttta tatttgatat tactgattct
     3241 tcaatcacta tttgtgttgg gctcataaaa ttcgccactt cggtataaac atcactcatt
     3301 ctgttaatac gaagttgaac ttgtggcata ttttcaattt gaaaattaat tattttcctc
     3361 tctgcatgtc gagaatcaaa agtttttaat ttttcgacac ttacgcatgg agtaaatcca
     3421 gcctttctaa tactgtcgct tagtagatca ccaatccaca gcaaatcaaa attaatttct
     3481 aactgttctt gtgtttttag gtattgagac ttgcttctta tataaaactg agtaagggtt
     3541 atcgttataa tacttgccag aaaaagacta attagcatct cagataaact aaatcctgtt
     3601 tgtcttccca tttcaatgag catccagatc ataggagcga ataattgact ggcttttttt
     3661 aaaccacgta acattcaaaa tgattttctt ttgagatctc ctgatatcaa aatgataatt
     3721 tgaaggcggc agagggagtc tattctcact aatatataat gcttcatcta cttgatctag
     3781 atattgggaa ccttgaattc gccaaataag atgattgatt atatctctgg ttttcaactg
     3841 ttgttccact aacatcagaa ctaccgttgt cattagcatt aatgacacaa gtacttccat
     3901 tagagtgaaa ccctgatgct tgctcataat aaatctcttc ctgaggttgg actgcccatg
     3961 aaggttaact gttcgcttat ataaattcaa tataacgatt tataaattct aaaaaataaa
//
LOCUS       DACVWI010000235         3989 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.236, whole genome shotgun sequence.
ACCESSION   DACVWI010000235 DACVWI010000000
VERSION     DACVWI010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3989
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.236"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..315
                     /locus_tag="JBH85_13590"
     CDS             <1..315
                     /locus_tag="JBH85_13590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HAU0947230.1"
                     /translation="FELIKKAEGFYLIFIHYGFTENINLPNELDEMFKRVYLPFEIIK
                     NKLIYFIEIVFVEMTRERQKHMYMWQKHLFSLMIRNAVPDIQFYRLPYNKTIAIGTYY
                     QL"
     gene            365..826
                     /locus_tag="JBH85_13595"
     CDS             365..826
                     /locus_tag="JBH85_13595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HAU0947231.1"
                     /translation="MNKADLHNSVLFKGIDEKYIDDFLENCEEVELPEGEFLFHQNEI
                     GDSMYIVEQGELQIILDQNSTGSNPQEEQVIGVLKSGALFGELCVFGQLKRAASIRAL
                     VDCRLLKIEGEDFRIRIYSKDLDALLICYNIAKLLSQRFITLLSLRPTLNM"
     gene            complement(994..1167)
                     /locus_tag="JBH85_13600"
     CDS             complement(994..1167)
                     /locus_tag="JBH85_13600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947232.1"
                     /translation="MVGAPFFGVLSHKVKNVIPIMFYAALIESILLAFNILYLHDLHL
                     KMIFYAIVGFLAS"
     gene            complement(1337..2248)
                     /locus_tag="JBH85_13605"
     CDS             complement(1337..2248)
                     /locus_tag="JBH85_13605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HAU0947233.1"
                     /translation="MTIQKGLHERRALKISIAVTFLLAVVGILFGLLSGSLAIVFDGM
                     FNMVDTVISILAFFVARLLTSKGNRRFQYGYWHIEPMVLVLNGSILILLCTYALVNAI
                     GSLMSGGHELNFDWAFVFALLVFFLSTGMYFYLVKTNRKIKSEFLRLDIQSWLMSALI
                     STSLLLAFGIAALLHGGAYGYFTPYIDPLILAILTAFLIFVPMAAVRDAMRDIFRMAP
                     VGLDERIREFLDELIKQHDFKTYTSYVAKIGRAQFIEIHIVVPMDYPISSIETLDKIR
                     NEIALAIGEDTPQRWLTIAFTANENWI"
     gene            complement(2405..3811)
                     /gene="dbpA"
                     /locus_tag="JBH85_13610"
     CDS             complement(2405..3811)
                     /gene="dbpA"
                     /locus_tag="JBH85_13610"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HAU0947234.1"
                     /translation="MTQSEHNDQHLSFSQFPLRQELIKSLASSNYENMTPIQMQSLPI
                     ILRNEDMIAQAKTGSGKTAAFALCLLNNLKISFFVVQALVLCPTRELAEQVSQAIRRL
                     ACLMPNVKIINLSGGIPMQPQLDSLRHGAHIIVGTPGRILKHLKNASLDLSQVKALVL
                     DEADRMLDMGFFDDIKNIISVCPKQRQTLLFSATYPEEIKRLSKQFMKDPKEVHVVTP
                     PEEIDIEQHFYEVSRHAQKFPLLKSLLLHYQPVSVLIFCNTKQQTIEVTDQLINEGFS
                     AIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVINFDLAFDHDVH
                     IHRIGRTGRAGSKGIALSIVTPADAQRICAIEDNYPLPIHWGNINELENHNTARLVPE
                     MVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKINITAMYSYVAIHHSQADKAYQ
                     YLQSGKLKGRKVNVRKIN"
BASE COUNT         1293 a          688 c          759 g         1249 t
ORIGIN      
        1 tttgagctta taaagaaagc tgaagggttt tatttaattt ttattcatta tgggtttact
       61 gaaaatatta atttgcctaa tgaattagac gaaatgttta aaagagtata cttacctttt
      121 gagataatta agaataaatt aatctatttt attgagatcg tttttgttga aatgactaga
      181 gaaaggcaaa aacacatgta catgtggcaa aagcaccttt tttctctcat gatacgcaat
      241 gctgtgccag atattcagtt ttatcgatta ccttacaata aaactattgc aatagggact
      301 tattatcaat tatgagccca ttcaagaggc gatattgggt ttttaagtgg ttaaggatag
      361 tgaaatgaac aaagccgatt tacataacag cgtgttattt aagggaatag atgaaaagta
      421 cattgatgat tttttggaaa attgtgagga agttgaactt ccggaaggtg aatttctttt
      481 tcatcaaaac gaaattggtg actcaatgta tattgtcgaa cagggtgaat tacaaattat
      541 actggatcaa aattcgacag gctcgaatcc tcaggaggag caagtgattg gagtacttaa
      601 aagcggagca ttgtttgggg aattatgtgt atttggacaa ctaaaacgag ccgcatcaat
      661 ccgtgcctta gtagattgta gattattaaa aatcgaaggg gaggatttca ggattcgtat
      721 ctactcaaaa gatttggacg cattgttgat ttgttataat atcgcaaaac tattaagcca
      781 gcgctttatt actcttttaa gcttgcgtcc tactctgaat atgtaaattg gaatagatct
      841 cattaaatga caagctcaaa tagattcaaa cccacggaac catagttcga agctgatgct
      901 ctgataattc cttataaatc aatatattgt aagctgtcaa attcacctga aatggcttat
      961 taccgcgagg tgtcgctatt atggagtctg ttatcaacta gctaaaaaac caactatggc
     1021 ataaaagatc atttttaagt gtaggtcatg aagataaagg atgttaaatg ccaataaaat
     1081 actttcaatc aatgcggcat aaaacatgat tggaatgacg ttctttactt tatgagacaa
     1141 cactccaaaa aaaggtgcgc cgaccatata ccccaaagtg gaaaagccat taacaagagt
     1201 tgcatctatc tggttaagat gataatgctg ttctagaaag tcaattacta aaattaagag
     1261 ttcattttgc tgtactttca attttcagta gcatgttttc acaaatatcc ttatggaaac
     1321 ttgaataaaa cgcttgttaa atccagtttt catttgcagt aaaggcaatg gtaagccaac
     1381 gttgtggcgt atcttctcca atagccaacg cgatttcatt acgaatttta tccagggttt
     1441 caatgctcga aattgggtaa tccataggta ctactatatg tatttcaata aattgtgcgc
     1501 gtcctatttt tgcaacgtag cttgtataag tcttgaaatc atgctgttta ataagctcat
     1561 ctaaaaattc tcttattctt tcatcaagac ccacaggagc catgcgaaat atgtctctca
     1621 tggcatcacg gactgcggcc ataggcacaa aaatcagaaa tgcagtaaga attgctaaaa
     1681 taagggggtc aatgtaaggg gtaaaatatc cataagcccc accatgcaac aaggctgcga
     1741 tgccaaatgc caataggaga gaagtagaaa tcaaagcaga cattaaccaa ctttgaatgt
     1801 ctagtcgcaa gaattcggac ttaattttgc ggtttgtttt gactaaataa aaatacatgc
     1861 ctgttgataa aaaaaacacc aaaagtgcaa acacaaatgc ccaatcaaaa ttgagttcat
     1921 gtccaccaga catcaaactg ccaatcgcgt ttaccagtgc ataagtacaa agaagtatta
     1981 ggatactacc attcaaaaca agaaccatag gttcaatatg ccagtaacca tattgaaatc
     2041 tccgattccc cttacttgtt aaaagacggg caacaaaaaa agcaaggatt gatataacgg
     2101 tatccaccat attaaacatg ccatcaaaga cgatagccaa tgaaccggac aatagcccaa
     2161 ataaaatacc taccacggct aagagaaagg taacagcgat tgatatttta agagctcttc
     2221 gttcatgaag tcccttttgt attgtcattt gagtgatatc ctgattttaa caatgcttta
     2281 tctacttata ctattgcttc aacagccact aataaatcca taggcttgta ttattaggtc
     2341 ttttacataa taactgcttc ttttttcaat tgttgcagta agtttttcgc atggtttaga
     2401 aaaatcaatt tattttacgt acattaactt tgcgtccttt taattttcca ctttgtaaat
     2461 attggtaggc tttatctgct tggctatggt gaattgcaac ataggagtac atggcggtga
     2521 tgttaatttt gccaattgtg ttgcctgcta atcctgcatc tttggttaat gccccaagga
     2581 tgtcaccagg gcgaatttta tcttttttac cggaagcaat acagagtgta accatttctg
     2641 gcactaagcg agcagtgttg tgattttcta attcattaat gtttccccaa tgaatgggga
     2701 gcgggtagtt atcttcaatg gcgcaaattc gttgtgcatc tgcaggcgtt acaatgctta
     2761 aggcaatgcc tttactccca gctcgtcctg ttcgaccaat acgatgaata tggacgtcgt
     2821 gatcaaaagc gagatcaaaa ttaatcactg cggaaagttc ttttatatca agtcctcgtg
     2881 ctgcaacatc agtggcgaca agaatagaac aactttggtt ggcaaaacgc aagacagcaa
     2941 gatcacgctc gatttgttcc atatcaccat ttaaagcgat ggcactgaag ccttcattga
     3001 tgagctggtc tgtgacttct attgtttgtt gcttggtatt acagaagatt aacactgaaa
     3061 cgggttgata gtgcaacagt aatgatttta ataagggaaa tttctgagca tgtctcgaga
     3121 cttcataaaa atgttgttca atatcaattt cttcaggagg ggttaccaca tgaacttctt
     3181 tcgggtcctt cataaattgt tttgaaagcc gtttgatttc ttcaggataa gtcgcagaaa
     3241 aaagcagggt ttgtcgttgt ttgggacaaa ccgaaataat gtttttaatg tcatcaaaaa
     3301 aacccatatc cagcattctg tctgcctcat ccaaaactaa agcttttacc tgagataagt
     3361 ctaaagaggc gttttttaaa tgcttaagta ttctccccgg tgttcctaca ataatatgag
     3421 ctccatgtcg taatgaatca agctgaggct gcattggtat accaccagat aaattaataa
     3481 ttttgacatt aggcatcaaa caggctaatc gacggatagc ttggcttact tgttccgcga
     3541 gttcacgggt agggcaaaga accaaggctt gtactacaaa aaaagaaatt tttaaattat
     3601 ttaataaaca caaagcaaaa gcagcggtct ttccactccc tgtttttgct tgagctatca
     3661 tatcttcatt tctaagaatt atgggcaggc tttgcatttg gataggggtc atattttcat
     3721 aatttgaaga agcaagactt tttattaatt cttgacgaag ggggaattga gagaatgata
     3781 ggtgttggtc gttgtgttct gattgagtca tggaaagtgc ttattgttat aataggtgaa
     3841 tagcttagca cttcttagtg caattttaaa tcaatttatt ttgggcaagc ttaatctgat
     3901 gcttacaatt gtcttttcta cttgaatccg tgtagatcaa aataacatta aaatcatctc
     3961 aaagacatca acagagagtg attttaatg
//
LOCUS       DACVWI010000236         3975 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.237, whole genome shotgun sequence.
ACCESSION   DACVWI010000236 DACVWI010000000
VERSION     DACVWI010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.237"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            250..1134
                     /locus_tag="JBH85_13615"
     CDS             250..1134
                     /locus_tag="JBH85_13615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAU0947235.1"
                     /translation="MTKTDKKIVVVTGCSKTSGVGYNLVCEMLKRGHQVIATVRNLET
                     SQINKANLPNSSNLDVKILDLCDENSIDRFIKEVLSQYQYIDALVNNAANVAIGPVES
                     ATTQDVLTTFQTKVFGPLSLIRGFIPVMRERKKGLLTTTSTIFTSVPVSIPGVAIYFS
                     ALAAFERLQESLAIELAPWNIKVINFQPGPITTELTRFDGSRADIVEKYYKNFTEQAY
                     QWFHQNTVFQNAAEVAKVFAEVIDMENPDLCYQSNLFGKQFVAKNKKDTTGREGMDKL
                     LEHFKNLPHDNPDDWKIQ"
     gene            1334..1564
                     /locus_tag="JBH85_13620"
     CDS             1334..1564
                     /locus_tag="JBH85_13620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HAU0947236.1"
                     /translation="MGEKQYVVYILASKAYGTLYTRITSNLVQRIYQHKKGLTEGFTK
                     RYNVHRLVYYEIHTDVYEAITREKCIKKWNRQ"
     gene            1740..2888
                     /gene="potA"
                     /locus_tag="JBH85_13625"
     CDS             1740..2888
                     /gene="potA"
                     /locus_tag="JBH85_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HAU0947237.1"
                     /translation="MDKISHSTHNCSFYLIKQMTTPLIEIRQIYKSYGNTPILNNVSL
                     NVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTQGEIFINGQCVNQLPPQKRDVHTVFQ
                     SYALFPHLSVFENVAFALRCKKTPNQEIRKRVFDALKLVQLESLAERNVKQLSGGQQQ
                     RVAIARAIINRPQVLLLDEPLSSLDYRLRKAMQSELKQLQKTLNMTFIFVTHDQEEAL
                     SMSDRIVVFNHGHIEQIGTPKAVYETPANLHVAMFIGEANIFDIQVHTVKDQDIITNI
                     EGIQLSCKNTGNYQVNDRLHLIVRPEDIRVWSLSEVEKTEGMLPGRIVDIIYKGSTVD
                     LKVELSSGKIINASEFFDEDDDKLEYTLHETVWVQWLPGWEVLLPYEG"
     gene            2878..3702
                     /locus_tag="JBH85_13630"
     CDS             2878..3702
                     /locus_tag="JBH85_13630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAU0947238.1"
                     /translation="MKAKSSALYLLYFWLIIFGFIPLLMVLVASFLSQDSIHLVTLPL
                     TLENYFDLFTPVFAKILFRSLLIACVTTLLCLLIAYPFSYLMIKSKHQSILLLLIIIP
                     FWTSSLIRTYALIAILKYKGVINALLLKLHLIDVPLSLLYTNFAVVIGLVYNLFPFMV
                     LPIFTNMERFDFRLIEAAKDLGANKWSIFTRVFLPNTAPGVLSGCLLVLLPAMTLFYI
                     PNVLGGARSILLGNLIQNQFLVLSDWPQGAATSVLLTSVLLILMFIFRRQNNEVIR"
     gene            3699..>3975
                     /gene="potC"
                     /locus_tag="JBH85_13635"
     CDS             3699..>3975
                     /gene="potC"
                     /locus_tag="JBH85_13635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095172.1"
                     /note="can transport spermidine and putrescine but
                     affinity is higher for spermidine; forms a complex of
                     PotA2BCD; PotC is a membrane component; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HAU0947239.1"
                     /translation="MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLR
                     WYKELFHDRGLWSAVFNSITLGLTSSLIATTMGLLASINLFLFRTRHR"
BASE COUNT         1236 a          767 c          737 g         1235 t
ORIGIN      
        1 gaataaatgt cccaataatc aaacgatagc aactaatctc agtaataaac tatatatcac
       61 tgaatatcct atattttctc aaccaatatt tttctgcttt caaaaaatca gttaagagtt
      121 tggaaaatca ataataaatg accgaattaa aaaccttttt aacaaagaga ttggggtttt
      181 tcgtaagttc tgaataaata aaagggctat actcggttta ttactctaaa agatcattag
      241 gatagggaca tgacgaagac ggataaaaaa atagtggtgg tcacaggttg ttcaaaaaca
      301 tctggcgtag gatataatct tgtatgtgaa atgctaaagc gcgggcatca agtcattgca
      361 acggtgagaa atcttgaaac aagccaaatt aacaaagcaa acctcccaaa ctccagcaat
      421 ttggatgtaa aaatattgga tctttgcgat gaaaattcaa ttgaccgctt tattaaagaa
      481 gtcttaagtc aatatcaata cattgacgcc ttggttaaca atgctgctaa tgtggctatt
      541 ggccctgttg aaagcgcaac cactcaagat gtattaacaa cttttcaaac caaagtattt
      601 ggcccattgt ctttaatcag gggattcatc cctgtaatga gagaaaggaa aaaaggttta
      661 ttaacaacaa catcgacgat ttttacctct gttcccgtta gtattccagg tgtcgcaatc
      721 tatttttcag cactcgcagc atttgaacga ttacaagaat ccttggcgat tgagctggcc
      781 ccatggaata tcaaagtaat taatttccaa cctgggccaa ttaccacaga attgacccga
      841 tttgatggct ctcgcgctga tattgttgag aaatactata aaaactttac tgaacaagct
      901 tatcaatggt tccatcagaa tactgttttt caaaatgcag cggaagtagc caaggtattt
      961 gctgaagtta ttgatatgga gaatcctgat ttatgctatc aaagcaatct ttttggaaag
     1021 cagtttgttg caaaaaacaa aaaagataca acagggcgtg aaggaatgga caagcttctg
     1081 gagcatttca aaaatttacc ccatgacaat cctgatgatt ggaaaattca ataaatgatt
     1141 tactggataa agtcatacta tccgccgcga aatctttgtg cataagcaaa aaatcgatca
     1201 tgcccgcgca ggcgggcaac cattcctcgc ttaccaccta aacaagatga agtaactcgc
     1261 tgatatacaa taaaaatcat ataatctcga tcgcaaaatt gcggcaggat atagcaacca
     1321 accaggatga ataatgggag agaaacaata tgttgtttat atattagcta gtaaggcata
     1381 tgggaccctt tataccagga ttaccagtaa tcttgtgcaa cgaatatatc agcacaaaaa
     1441 aggtttgacc gaaggattta ctaaaagata caacgtccat cggttagttt attatgaaat
     1501 tcacaccgat gtttatgaag caataaccag agaaaaatgt attaagaaat ggaacaggca
     1561 atgaaaataa acttgatcga acaaaaaaat cctcagcggc ttgacctgag cattggatta
     1621 tgttgataga tggttgcccg cctacgcggg catgactgat ttttttgctc atgtacaaaa
     1681 cacaaaaata gacaatagtt gactaatttt ttaatattgg gaacaaagtt tgtgattgac
     1741 tggacaagat aagtcacagc acacataatt gcagttttta tttaataaag cagatgacaa
     1801 caccgctcat tgaaatccgt cagatttata aatcatacgg caatacacca attttgaata
     1861 atgtttcgct aaacgtcaat cacggtgaat ttttaacctt actgggccct tcaggttgtg
     1921 gaaaaacaac ccttcttcgg cttatatctg gttttgaaca accaacgcaa ggtgagattt
     1981 tcattaatgg tcaatgtgtt aatcaattac cacctcaaaa acgggatgtg catactgttt
     2041 ttcaaagtta tgcccttttc cctcatttat ccgtttttga aaatgtcgca tttgccttgc
     2101 gctgcaaaaa aacgcccaac caggaaatca ggaagcgagt ctttgatgcg ttaaaacttg
     2161 tacaacttga atcgttagct gaaagaaatg tgaaacagtt aagtggaggc caacaacaac
     2221 gtgttgcgat tgctcgagca atcatcaata gacctcaagt actgttgtta gatgagccat
     2281 tgagttccct tgactacagg cttaggaaag ccatgcaatc cgaattgaaa caattacaaa
     2341 aaaccttgaa tatgacgttt atttttgtaa cgcatgatca ggaagaagcc ttatcaatgt
     2401 ctgaccgtat tgtcgtcttt aatcatggcc acattgaaca aattggtact cccaaggctg
     2461 tctatgaaac ccctgccaac ctgcatgttg ccatgtttat tggcgaagcg aatatatttg
     2521 atattcaggt tcacacagta aaggatcaag acatcataac gaacattgaa ggaatccagc
     2581 tatcctgtaa aaacactggc aattatcaag tcaacgaccg gcttcatttg atcgttcgtc
     2641 cagaggatat tcgagtttgg agcttatccg aagtagaaaa aacagaagga atgttgcctg
     2701 gtcgtattgt tgatatcatt tataaaggct ctacggttga tctcaaagtg gaattgtcat
     2761 caggcaaaat catcaatgct tcggagtttt ttgatgaaga cgatgataag ctggaataca
     2821 ctctccatga aaccgtttgg gtacaatggt tgcctggctg ggaggtttta ttaccttatg
     2881 aaggctaaat catctgcact gtatttattg tatttttggc taattatttt tggcttcatt
     2941 cctttgttaa tggtgctggt tgccagcttt ttatcccaag acagtattca tcttgttacc
     3001 ttgccattga cattggaaaa ttattttgac ttgtttactc ctgtttttgc aaaaatcctt
     3061 ttccgatcct tgctgatagc ctgtgtcacc acccttcttt gcctgctcat cgcctatccc
     3121 tttagttatc ttatgattaa atcaaaacac caatctattt tattgctgtt gattatcata
     3181 cctttctgga caagctcatt aataagaact tatgctttga ttgctatcct taaatacaaa
     3241 ggcgtgataa atgccctctt gctgaaattg catttgattg atgttccctt gtcactactc
     3301 tataccaatt ttgcggtcgt tattggcttg gtttacaatc ttttcccttt catggtccta
     3361 cccattttta ctaatatgga acggttcgat ttcaggttaa ttgaggcagc taaagattta
     3421 ggggcaaaca agtggtctat atttacacga gtatttttgc ctaacacagc ccctggagtc
     3481 ttatcaggtt gtttgctggt cttgttacca gcaatgactt tattttacat tcctaatgta
     3541 ttaggtggcg ctcgttccat tttattggga aatttaatcc aaaatcaatt ccttgtcctg
     3601 agcgattggc ctcagggagc cgctaccagt gtgctattaa cttccgttct gcttatttta
     3661 atgttcattt ttcggcgaca gaacaatgag gtcattcgat gaaaacaatg acacagcgcc
     3721 tgtttctttc tttagtttat gcttttcttt atatccccat tgcaatactg gtgctctatt
     3781 cagtaaatga tgccaaattt tcattacaat ggcatgggtt ttctttgcga tggtacaaag
     3841 aactatttca tgatcgaggc ttgtggtctg ctgttttcaa ttctatcacc ctgggcctaa
     3901 catcctctct tatcgctaca acaatggggc tattggcctc aatcaactta tttttatttc
     3961 gtacaagaca ccgcc
//
LOCUS       DACVWI010000237         3971 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.238, whole genome shotgun sequence.
ACCESSION   DACVWI010000237 DACVWI010000000
VERSION     DACVWI010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3971
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.238"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            146..817
                     /locus_tag="JBH85_13640"
     CDS             146..817
                     /locus_tag="JBH85_13640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine transporter LysE"
                     /protein_id="HAU0947240.1"
                     /translation="MKNLIKKLGVSMEQWHQFTLLFPLIILVFISLISPGPDFAITVK
                     NSLAYSRKSGLLTALGIALGSLVHISYTLLGLGLFITKTPIILHIIQYLGAGYLFYIG
                     LKNLGAKPNADQIGSYTTNNDLKPSEAFFNGFITNLLNPKAMLFFISLFSVLMPREIS
                     ISTKLFLAIVLFLQTLLWFSFVAFSLSGKNTRTKFQRISYWIERITGVILIALALKLL
                     LSQLV"
     gene            complement(847..1431)
                     /locus_tag="JBH85_13645"
     CDS             complement(847..1431)
                     /locus_tag="JBH85_13645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947241.1"
                     /translation="MPSLFGRKNIFAMKYLTTSRLLLRAWDREDTIPFYRMSQDPRVM
                     KYFPELWSMDMVKDFIIRMNEQLSQKKFTLWAAEVKDNKQFIGFIGLNAPTWNAHFTP
                     CVEIGWRLATEFWGQGYATEGAKAVLEYAFLDMHIPEIVSFTVPDNSRSRGVMERIGM
                     IRDFAGDFLHPKLVSDHRLAKHVLYRIQNSLIKV"
     gene            complement(1392..2180)
                     /locus_tag="JBH85_13650"
     CDS             complement(1392..2180)
                     /locus_tag="JBH85_13650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HAU0947242.1"
                     /translation="MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENN
                     LSETAFFVREDEGYRLRWFTPNEEVALCGHATLASSYVLFNQLGFSGKEILFHSLSGK
                     LWVKNTEQGLVMDFPALPYEEIDFRRELEHLNLKKPFKVLQSQFDLMFVYQNAEEVSE
                     AKPDLNAVAHLDYRGLILTAPGTSTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCER
                     LKKNHITALQGGLRQGDLYCEVKENRVLLYGNCHLYLEGRIYLP"
     gene            2258..2677
                     /locus_tag="JBH85_13655"
     CDS             2258..2677
                     /locus_tag="JBH85_13655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAU0947243.1"
                     /translation="MYLSSLLKKTNRLLIKRANELIKPYALNHAYTYILMELYNENGL
                     TQSELVQLIEVEQPTLVRTLDRMERDGFITRKPSSMDRRVVHIFLTEKARLLQKKLDE
                     CSRMLNHEILAGFSEDEKTKLQELTHRVLDNLRNPIE"
     gene            complement(2707..3162)
                     /locus_tag="JBH85_13660"
     CDS             complement(2707..3162)
                     /locus_tag="JBH85_13660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HAU0947244.1"
                     /translation="MPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAK
                     TVIIKMDGRLAMVVLPASDHITFMKLKEAIGTSDLELATESEFEGKFAECDVGAMPPF
                     GNLYGLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVKPTLVTL"
     gene            complement(3322..3894)
                     /locus_tag="JBH85_13665"
     CDS             complement(3322..3894)
                     /locus_tag="JBH85_13665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HAU0947245.1"
                     /translation="MLLPIQVTFRNMDPSKAVESRAIKLAKKLDCLYDKIMGCRVVIE
                     SPHRHHNKGKLYHVRIDLTVPDAELVVSRESSNKHAHEDVYVSLRDAFNAIERQLKNY
                     ANQRRGHVKRHEDSIRGGRVLEVCPIADYGYIETIDGRLIRFTGQSVVDYDINKLEVG
                     DRVRFVETVKNTQEAAASTVYVEGKRHIMN"
BASE COUNT         1277 a          813 c          636 g         1245 t
ORIGIN      
        1 agaaaatcta tttaatgcgg atagaaaacc accctttcca accctgaggt gagatacatt
       61 tagagagttt aagtcataga aataatgtcg tattcactaa atgtaaaacc aaaaaagagc
      121 gtttaaaaat tagctatgat attggctgaa aaacttaata aaaaaacttg gagtttctat
      181 ggaacaatgg catcaattta ctctactatt tcctttaatt attttagttt ttatttcatt
      241 aatcagtcct gggccagatt ttgctatcac agtcaaaaac agcttggctt attccagaaa
      301 gagtggttta ttaaccgcat taggaatagc tttgggcagc ttggttcata tcagttacac
      361 tcttcttgga ttaggcttgt ttattaccaa aacgcctata atactgcata tcatccagta
      421 tctaggcgct ggatacctct tttatattgg ccttaaaaat cttggtgcca agccaaatgc
      481 tgaccaaata ggaagttata caacgaacaa cgatttaaaa ccaagcgaag cttttttcaa
      541 tgggtttata acgaatttat tgaatcccaa agccatgctc ttttttatca gtttattttc
      601 agtgcttatg cccagagaaa tctcaatctc caccaaatta ttcctggcaa ttgtcctctt
      661 tctacaaaca ttgttatggt tttcttttgt tgcattcagt ctttctggaa aaaatacgcg
      721 tacgaaattt caaagaatta gctattggat tgagcgtatt acaggtgtca ttttaattgc
      781 attggcatta aaattattgc taagccaatt ggtctaatgc tcagatagaa gaacatacaa
      841 aatccatcaa acttttatta aggaattctg tatacgatat aaaacatgct tcgctaacct
      901 gtgatcagag actaatttag gatgtaaaaa atctcccgca aaatctctga tcatcccaat
      961 ccgctccata acaccccttg agcgggaatt atcaggtacg gtaaaagaaa ctatttcggg
     1021 aatatgcata tccagaaaag catattcaag taccgctttt gccccttctg tagcataacc
     1081 ttgcccccaa aactcagttg ccaaacgcca gcctatctct acacaaggag tgaagtgagc
     1141 attccaggtt ggagcattta atccaataaa accaataaac tgcttattgt ccttcacttc
     1201 agctgcccac aaagtaaatt ttttttgaga taattgttca ttcattctga taatgaaatc
     1261 tttaaccata tccatagacc acaattcggg gaaatacttc atgacccgag gatcctgact
     1321 cattctatag aaagggatag tatcttctct atcccaagct cttagcaaaa gccttgaggt
     1381 tgttaaatat ttcatggcaa atatattctt ccttccaaat aaagatggca atttccatag
     1441 agtaacactc tgttttcctt cacttcacaa taaagatcac cttgtctgag acctccttgt
     1501 aaagcagtta tatggttctt ctttaaccgt tcacaccaat aaggagcaat aacacaatga
     1561 gcagatcctg ttaccgggtc ttctggtaca ttacaaccag ggtaaaaaca acgagaataa
     1621 acatcggttg atgttcctgg agcagttaaa atcaaccccc tatagtcaag atgagccaca
     1681 gcattcaaat caggcttggc ctcactcact tcttctgcat tttgatacac aaacatcaaa
     1741 tcaaattgac tttgtagtac cttaaatggt ttttttaaat tcaaatgctc tagttccctt
     1801 ctaaaatcga tttcttcata aggtagagct ggaaaatcca taaccaagcc ttgctctgtg
     1861 tttttaaccc atagtttacc gctcaagcta tgaaataaaa tttcttttcc agaaaatccc
     1921 aattgattaa aaagtacata agagctggca agagtagcat gcccacataa tgccacttct
     1981 tcattggggg taaaccatct gagcctgtat ccctcatctt ctcgaacaaa aaaggctgtt
     2041 tcagataaat tattttcagc agcaatggct tgcatagtct catcacttaa ccatttatct
     2101 aacgggcaaa cagcagcagg attacctttg aataaatttg aggcaaatgc atccacttga
     2161 tagattggta agcttttcat agatgtctcc taaaacaact tgtagataat aacatagctt
     2221 gttattatat agcaagctat ttaattgtga gaaatttatg tatctttcct ctctgctaaa
     2281 aaaaacaaat cgtttgttaa tcaagcgagc caatgaatta attaaacctt atgctctgaa
     2341 tcatgcctac acttatatat tgatggaact gtataatgaa aatgggttga cgcaatctga
     2401 attggttcaa ttgattgaag tggaacaacc tacccttgta agaactttgg atcgaatgga
     2461 aagagatgga tttattactc gaaaaccaag ctccatggat agaagagtcg ttcatatttt
     2521 tcttacagaa aaagccagac ttttgcaaaa aaaattagat gaatgttcta gaatgcttaa
     2581 ccacgagata ctcgctggtt tttcagaaga tgaaaaaaca aaattacaag agcttactca
     2641 tcgcgttctt gataatttaa ggaatcccat tgaataattt ataatgatat tactaatcgc
     2701 ttcattctat agcgtcacca atgtgggctt tactaatttt tcaaaatcac caaaagagag
     2761 ttgcatcaat tccgaatgag aacccgcatt gaataagata ttatcctgtg cactcagttt
     2821 agtcgacacc aatactggta aaccatacaa attaccgaat gggggcatag ctccaacatc
     2881 acattccgca aatttccctt caaactctga ttcagtagca agttcaagat cagaagtacc
     2941 aatagcttct ttaagtttca taaaggtaat atggtcactt gcaggtaata ctaccatggc
     3001 taaacgtcca tccattttta taataaccgt ctttgccagt tgttttcctg aaacatgagc
     3061 agaagcagcg atttcttgtg cagtgtacgc tggtgaatga gctatagaca aatattttat
     3121 cttatggctg tccaaaaatt gtttaagctt tttaactggc atgacaaact ccttttcgat
     3181 actaactcat tctttcagaa aatgccctct ctcaagtgcc cttatttaaa attttgaatc
     3241 atttgtttgg aagcagtcat ttcgcctaaa caattactca acagcaaact gcaaattacc
     3301 aataggcctc tgatacccct gttagttcat aatatggcgt ttaccttcaa cgtaaaccgt
     3361 acttgcagca gcctcctgtg tgtttttaac cgtttcaaca aatcgtactc ggtcaccaac
     3421 ctctaattta ttgatgtcat aatcaacgac actttggcct gtaaatcgta tcagacgccc
     3481 atcaattgtt tctatgtagc cataatcagc aatgggacat acttcaagaa ctctcccacc
     3541 acgaatagaa tcctcatgac gcttgacatg gcctcgccgt tgatttgcat aatttttaag
     3601 ctggcgctca atcgcattaa aagcgtctct tagagaaaca tatacatctt catgcgcatg
     3661 cttgtttgat gattcacggc tcacaactaa ctcagcatca ggaactgtca gatcaatacg
     3721 tacatgataa agctttcctt tgttatgatg gcgatgagga gactcaatga ctactcgaca
     3781 acccattatt ttgtcataaa gacaatcaag ctttttagca agttttatag ccctgctttc
     3841 aacagctttt gatggatcca tatttcggaa tgtcacctga ataggaagta acatttttaa
     3901 cctcccttat gttttgatta tgaataattt cagatcttat ttactaatct atagacaaaa
     3961 aaaatgttgc t
//
LOCUS       DACVWI010000238         3970 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.239, whole genome shotgun sequence.
ACCESSION   DACVWI010000238 DACVWI010000000
VERSION     DACVWI010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3970
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.239"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(89..448)
                     /locus_tag="JBH85_13670"
     CDS             complement(89..448)
                     /locus_tag="JBH85_13670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947246.1"
                     /translation="MSTKNQDDIMKKRIVSLFVISTAISSVNAATQAIVWGESTKALP
                     QFMQAHPFKKQGLLQTVKSQQSDYKLELQNNSNHATRHARYQITYKGVPVLGLSSHFS
                     FQRWRQRNCNRYEYYRN"
     gene            675..1529
                     /locus_tag="JBH85_13675"
     CDS             675..1529
                     /locus_tag="JBH85_13675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HAU0947247.1"
                     /translation="MNFNIIGAGRLGKNLGIAMSVHQIASLNSICNSNLASAKIACNE
                     IGFGNAVGKISDLSEADITWITCRDDSILDVVSILDNIEILKKGSLVVHCSGALNSSV
                     LLPLKKQGCYIASAHPLKAFRTNSLDSNAFKQVHCVIEGDYEACRWLRFAFEKLEASI
                     IAIQPEMKVIYHTAATIASNYLVTLASYSEELLLKAGIQQAQSRKMICDLMYSNILNL
                     SQVDSAKSALTGPLTRGDMQTISLHLEAIDNSEIKRLYKSMALATLPLLDLSLDRKET
                     LRKTLEKE"
     gene            complement(1636..3891)
                     /gene="parC"
                     /locus_tag="JBH85_13680"
     CDS             complement(1636..3891)
                     /gene="parC"
                     /locus_tag="JBH85_13680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HAU0947248.1"
                     /translation="MKKIPNMNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGL
                     KPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYR
                     YPFVDGQGNWGSPDDPKSFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEP
                     ALLPARLPNILLNGATGIAVGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKG
                     PDFPTEAEIISPSETIRAIYESGNGSIKMRAIYTQEKQNIVITALPYQVSGARVMEQI
                     ALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVN
                     FNMIGLDGKPRVKGLLAILTEWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNI
                     DEVIAIIREHDQPKQGLISRFNLTERQAEAILEMKLRHLAKLEEIKLRGELDELSDER
                     DTLQKTLASHSLLKELVKEEITKDRDEFGDPRLSPIITREDSQALKEEDILPNEPITV
                     VLSKNGWVRAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVL
                     PSARGQGEPLTGKLNPAEGVLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNG
                     KACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIP
                     VAKAVSREEYIVDMQVLTTNDSLTVYAGKRHFTLKGEDLTHYKGERGRRGNRLPRGLQ
                     NVSQLHVTQSE"
BASE COUNT         1186 a          823 c          695 g         1266 t
ORIGIN      
        1 aaatttaacc ggttcagtta cctttccaag agtcttttgt tctatatcat tcgggctcaa
       61 ttttccctca gtagaattaa tatcctgttc aattccggta atattcatac ctgttacagt
      121 ttctttggcg ccatctttgg aatgaaaaat gacttgataa ccccaaaacc ggaaccccct
      181 tgtaggttat ttgataacga gcatgcctgg tcgcatggtt agaattattt tgtaactcca
      241 gtttataatc actttgctga ctttttacag tttgcaataa tccttgtttc ttaaaaggat
      301 gtgcttgcat aaattgaggt aatgctttcg ttgactcacc ccatacgatt gcttgggtag
      361 ctgcgtttac agatgaaata gctgttgaaa tgacaaataa tgaaacaatc cgttttttca
      421 taatatcatc ctgatttttt gtagaaattt catgctgcta caaattcgag aaaaaaaaac
      481 aatcagaaga cacaaattac gacaaaattt tattttttta tatctagaat aacaatttat
      541 actcaacttc ttatcgcaaa cgattccctc agactctgct aatgtccgct taattcagac
      601 tgataattta gcaagacaat aaattatttt ccattataat aagaaaatgt actgagacag
      661 acattggttt cactatgaat ttcaatatta ttggtgctgg gcgtctgggt aagaatttag
      721 gcattgcaat gtctgttcat cagattgcct ctttaaattc tatttgtaac tcaaatttag
      781 caagtgccaa gatagcctgc aatgaaatcg gatttggcaa tgcggttggt aaaatatctg
      841 atctttctga agcagatata acgtggataa cctgtaggga cgactccatt ttggatgtag
      901 tatcgatatt ggacaatatt gagatattaa aaaaaggcag cttggtggtc cactgcagcg
      961 gcgctcttaa ttcaagtgta cttcttcctc tgaaaaaaca gggttgttat attgcaagcg
     1021 cgcatccttt gaaagcattc cgcactaatt ctttggattc caatgcgttt aaacaagtcc
     1081 attgcgtgat agagggagat tatgaggcat gtcgttggct taggtttgca tttgagaagc
     1141 tggaagccag cattatcgca attcaacctg aaatgaaggt catttatcat actgcagcaa
     1201 cgattgcttc taattattta gtgactttag cttcatatag tgaagagtta cttttaaaag
     1261 cgggaataca gcaagcacaa tcaagaaaaa tgatatgtga tctcatgtac agcaacatcc
     1321 ttaacttaag tcaggtagat agcgcaaaaa gtgctttaac cggacctttg actagaggag
     1381 atatgcaaac tatttccttg catctcgaag cgatagataa tagtgaaatc aagagattat
     1441 ataaaagcat ggcgctagct accctgcctt tgttagattt atcattagat agaaaagaaa
     1501 ccttaagaaa aactcttgaa aaagaataac gttgcagtta ttgaacaata agccagctct
     1561 gtgcactatt ctgtttgatt tcaaatcatc acttaaaggt gtttcacggg aaacatacag
     1621 tccctaacgg ccatgttact cagattgagt aacatgcaat tgagaaacat tttgtaaacc
     1681 tcttggcaac cggtttcctc tcctgcccct ttcaccctta tagtgagtca aatcctcacc
     1741 tttcagagta aaatgccgtt taccagcata aaccgtcagc gaatcattcg ttgttaaaac
     1801 ttgcatatca actatatact cttctcgtga gaccgcttta gcgacaggga tactgatcaa
     1861 tttattccct tttcctcgag ataattcagg caactcctca agagaaaaaa tcaataaacg
     1921 ccctacatta gtggcacaag caacaaataa ttgctctcga tttggtatta gccttggcgg
     1981 caatatatga ctgttttcac ttaatttgat gcatgccttt ccattacgat tttttacata
     2041 taaatcttca attttggcga taaatccata cccggaatcg gtagccaata acaccttttg
     2101 ttcaggctct ccgccaacaa ttgcttcaaa caatactcct tcagcagggt ttaattttcc
     2161 ggtcaaaggc tcgccttgac cacgtgccga tggcaataca tgtcctggaa gcgaatagac
     2221 ctttccctct ccatcaaaaa ataaaacttg ctgattagta cgagctagcg tttgggcttt
     2281 gaattcatct cccgctttat agctgagttc cttaccatcg acatcatgcc ccttggccgc
     2341 tctgacccat ccatttttag acaatacaac cgtaataggc tcattaggca aaatatcctc
     2401 ttcttttaat gcctgagagt cttcccttgt aataatgggt gaaaggcgtg ggtcaccaaa
     2461 ctcatctcga tctttcgtta tctcttcttt taccagttct tttaagagag aatgactagc
     2521 cagtgttttt tgtaaagtat cacgttcatc agacagctca tccagttcac cacgcaattt
     2581 aatctcttcc aatttggcta aatgccgcag tttcatttcc aaaattgctt cagcctgtct
     2641 ttcggttaag ttaaagcgtg aaattaatcc ttgttttggt tgatcatgtt ctctgatgat
     2701 tgcaatgact tcatctatat taagataggc aataagcagt ccttcaagaa tatgaatacg
     2761 ctccagtacc ttttccaatc tgaattgaag acgtcttttt actgtggcaa gcctaaattc
     2821 caaccattca gtcaagattg ctaacagtcc tttaactctt ggcttgccat caagcccaat
     2881 catattaaaa ttaactcgat agctacgctc caaatccgtg gtagcaaata aatgcgacat
     2941 taaactttct atatctactc gattagagcg agggataata accaaccgtg ttggatgctc
     3001 gtgatctgat tcatcacgta aatcctcaac catcggtaat tttttctgtt gcatctgcaa
     3061 cgcgatttgc tccattaccc tggctccgga tacttgataa ggcaaagctg ttatgacgat
     3121 gttttgtttt tcttgagtat aaattgctcg cattttaatt gagccattac cggactcgta
     3181 tatagctcta attgtttcac ttgggctaat gatttctgct tctgttggaa aatcagggcc
     3241 tttaatatat tcacaaatag tcttaatatc tgcttggggg ttatccagca gatgaataca
     3301 cgcattagca acttcagtca aattgtgcgg aagaatatct gaagccatac caacagctat
     3361 acctgttgca ccattcaata aaatattagg caaacgagct ggtaaaagag cgggctcttg
     3421 caaagtgcca tcaaaattat ctacccaatc tacagttcct tgtagcagtt ctccgagtaa
     3481 cacatcagca taatgagata atcttgcttc tgtatacctc attgcagcaa atgatttggg
     3541 atcatccggg gatccccaat ttccttgtcc atcaacaaat ggatagcgat atgaaaaggg
     3601 ttgagccatt aaaaccatag cctcatagca tgcactatca ccatgaggat ggaatttacc
     3661 aagaacatcc cctactgtac gcgctgattt tttatatttt gctgttgctt tcaaacccaa
     3721 ctcagacata gcataaacaa ttctgcgttg aacaggctta agtccatctg cgatgctcgg
     3781 taatgctctg tccaaaatga catacattga ataatcaaga taagcttttt ctgtaaactc
     3841 agtaagcggt tttttttcag ttacttcatt catattgggt attttcttca tatattaatt
     3901 gctatccatc atcctagtga atcgtataag acaatgcaaa acaattttaa cagaatattc
     3961 atgctgttag
//
LOCUS       DACVWI010000239         3956 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.240, whole genome shotgun sequence.
ACCESSION   DACVWI010000239 DACVWI010000000
VERSION     DACVWI010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3956
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.240"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            15..101
                     /locus_tag="JBH85_13685"
     tRNA            15..101
                     /locus_tag="JBH85_13685"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:49..51,aa:Leu,seq:caa)
     gene            complement(218..1477)
                     /locus_tag="JBH85_13690"
     CDS             complement(218..1477)
                     /locus_tag="JBH85_13690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmpG family muropeptide MFS transporter"
                     /protein_id="HAU0947249.1"
                     /translation="MNKGMNKRLFIVFILGFSSGLPMALISSTLQAWYANNGMSVLAT
                     GALSLVSLPYAYRIFWGPILDRYSLFHLGKRRSWILTMQILLLLGFNLMAWFIPAQYP
                     KLMAFLALVLACFSATQDVAIDAHRAEYLPPQEHALGASLAVFGYRLALLLSGGLALV
                     MAEKLGWAFTYRFMGFAMAIGMLAIFVSKEPSTEIKEKSNFLVSFIAPVKELLSRPGI
                     IYLLIFIFCYKLGEAFTTTTSGIVMPFLIQGLGFSLDTIGYINKMLGIVSILLGGLTA
                     GFLLMRYSLYRALFFFGLLQALTNVFFVILAMSGKNIVLLAIAVFSDNFVAGMGSTAL
                     VALFMRLVNKQFTGTQFSMLVALSTLPRIISGPVAATIQMHIGWVGLYQLSIVFALFF
                     IPFLVLIKEQTKERLQSDTAATPIGAA"
     gene            complement(1631..2338)
                     /locus_tag="JBH85_13695"
     CDS             complement(1631..2338)
                     /locus_tag="JBH85_13695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAU0947250.1"
                     /translation="MFMKMKLVTAAVMGLAMSTAMAATDATSLATDKDKLSYSIGADL
                     GKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKK
                     ADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINAGNGVKPGKSDTVTVEYTGRLIDG
                     TVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGP
                     NETLIFKIHLISVKKSS"
     gene            2537..3913
                     /locus_tag="JBH85_13700"
     CDS             2537..3913
                     /locus_tag="JBH85_13700"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HAU0947251.1"
                     /translation="MNISVFDLFSIGIGPSSSHTVGPMLAANAFLQLLEQKNLFDKTQ
                     RVKVELYGSLALTGKGHGTDKAILNGLENKAPETVDPASMIPRMHEILDSNLLNLAGK
                     KEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIGGGFITTEEDFD
                     KSTTDTNPPPYPFATATELLKLCKKHHLTIAELMLVNEKTWRSTAEIHKGILDIAKVM
                     DDCINNGCKHDGVLPGGLNLKRRAPDLYRKLIEQKGVKSVFEQSDIMNHLNLYAMAVN
                     EENAAGGRIVTAPTNGAAGIIPAVLKYCQQAHDRMSNEDIYTYFLTAAAIGILYKKGA
                     SISGAEVGCQGEVGVASSMAAAGLTAVLGGTIEQVENAAEIAMEHHLGMTCDPVLGLV
                     QIPCIERNAMGAVKAVNATRMALIGDGQHQISLDKVIKTMKQTGMDMQSIYKETSMGG
                     LAVNLPEC"
BASE COUNT         1292 a          824 c          748 g         1092 t
ORIGIN      
        1 taatgaccgc gcgtgccggg gtggcggaat tggtagacgc gccggattca aaatccggtg
       61 gtggtgacac cgtgtgggtt cgagtcccac cctcggtacc aatcaataaa ctatcaaata
      121 atttcaatac aacagatacc aaaaactaaa attatttaat cctcagttag tccagagctg
      181 tataaaacaa cctattttga tctgattaaa atagaaatta agctgcacca attggtgtag
      241 cagctgtatc actttgtaac ctctcttttg tttgctcctt gatcaacact agaaaaggta
      301 taaaaaacaa agcgaaaacg atggataact gatataaacc gacccagccg atatgcattt
      361 gaatggtagc agctacagga cctgaaatga tcctgggtaa agtcgataat gcgactaaca
      421 tagaaaattg tgttccagta aactgtttat tcaccaaacg cataaataaa gcaaccaatg
      481 cagtagaacc catccctgcg acgaaattat ccgaaaacac tgcgattgct aacagcacaa
      541 tattttttcc tgacatcgct aatatgacaa aaaagacatt agttagtgct tgtagtaagc
      601 caaagaaaaa taatgcgcga tacaaggaat atcgcattaa taaaaaacct gccgttaaac
      661 cgcctaacaa gatagagact attccaagca ttttattgat atagccgata gtatccagag
      721 agaaacccaa gccttggatt aaaaaaggca ttactatacc gctagtcgtc gtagtaaatg
      781 cttcacctaa tttataacaa aatataaata ttaaaagata aataatccct gggcggctta
      841 aaagttcttt cactggtgca ataaacgaaa caagaaaatt acttttttct tttatttctg
      901 tagagggttc cttgctgaca aatattgcca acatacctat cgccattgca aatcccataa
      961 agcgataagt aaaagcccag cctaattttt ctgccattac caaagccaaa ccgccagata
     1021 acaaaagagc caatcgatac ccaaacacag ccagagacgc gcccaatgca tgttcctgtg
     1081 ggggaagata ttctgctcga tgagcatcaa ttgccacatc ttgtgtggct gaaaaacagg
     1141 ctaatactaa agctaaaaat gccatcaatt taggatattg agctggaata aaccaggcca
     1201 tcagattaaa acccagaagc agtagtatct gcatggtgag aatccagctt cgccttttcc
     1261 ctaaatgaaa taaagagtag cgatcaagaa ttggacccca gaaaatacga tacgcataag
     1321 gtagactgac taaacttaaa gctcccgtcg caagcactga catgccatta ttagcgtacc
     1381 atgcttgcaa ggtactgctg attaatgcca taggtaaacc ggaagaaaaa cctaaaatga
     1441 aaacgataaa caggcgcttg ttcattcctt tgttcactca gtatgagtca tagcctttaa
     1501 aacagacata ttttaatttc ctcagtggtg ttaggctgac accttttatg aagatcatta
     1561 gcctttacaa agagagcatc cctctctaaa tgagagggat gcgttttgta tgactttaat
     1621 tcaaaaaaac ttaagatgat tttttcactg aaattaagtg aattttaaat attaaagttt
     1681 catttgggcc aataggtccg ccaacgctac gtgggccata tgcaagacct gagggaacat
     1741 aaatttccca agttgatcca gctggcatca attgcaaagc ttctgtccat cctgggataa
     1801 cttgtgaaac ctgaaaagtt gctggcttac cagttttttc ggtactgtca aaaacggtac
     1861 catcaatcag acgaccagtg tattcgacag tgactgtatc cgatttacca ggtttaacac
     1921 catttccagc attgattact ttgtattgca aaccacttgg caatacaaca acgcctggct
     1981 tgtttttgtt ttcagttaaa aaggcttccc cttttacttt attttcatcc gctttcttat
     2041 tgaattcagc agtacgcttt gccatcaaat ctttctgaaa cttgttaaga acgtctttca
     2101 tttgctgttc ggttaaagcc aattgagcgc cactcatagc gtcttgcatg cctttagcca
     2161 ttgcttccgg attaacatct atgccttgat ttttaaaatt cttccccaaa tcggcaccaa
     2221 tgctataaga caacttatcc ttgtctgtag ctaatgatgt ggcatcggtt gcagccattg
     2281 ctgttgacat tgcaagcccc ataacagccg cagtcaccaa tttcatcttc ataaacaatc
     2341 cccttttagt cttacactta agttctcata ctgcacaata aattgagcaa aattaaacaa
     2401 aaacaaatcg cccagtaatt ctgcctaaat ttacataaaa ttaccagtca taagctatca
     2461 tttaattata taatggacaa aaaggtaata tccttctaca cttgccccta ataatgaaca
     2521 agagatttta acggcgatga acattagtgt ttttgattta ttttctatag gaattgggcc
     2581 atcaagctca cacacagtag gccctatgtt agctgccaat gcttttttgc aattactgga
     2641 acaaaaaaat ctgtttgata aaactcagag agtcaaagta gagctttatg gttcgctggc
     2701 gcttactggc aaggggcacg gtactgataa agcgatttta aatggtcttg aaaacaaagc
     2761 gcccgagaca gttgatcctg cctccatgat cccaagaatg catgaaatcc ttgattctaa
     2821 tctactcaat ttggccggca agaaagaaat tccttttcat gaagcgaccg attttttatt
     2881 tttacaaaaa gaattattac ccaaacacag taatggaatg cgcttttctg cttttgatgg
     2941 aaacgctaat ctactgattg agcaagtcta ttactctatt ggcggtggtt ttattacaac
     3001 tgaagaagac tttgataaat caacaaccga taccaatccc cccccttacc cctttgcaac
     3061 agcaactgag ttattgaaat tatgcaaaaa acatcacttg accatcgctg aattgatgtt
     3121 agtcaatgaa aaaacatgga gaagtacagc agaaattcat aaaggaattc ttgatattgc
     3181 caaagtaatg gatgactgca tcaacaacgg ttgcaaacat gatggagtgc tccccggtgg
     3241 ccttaattta aagcgacggg cacctgactt gtatagaaaa ctaatagaac aaaaaggggt
     3301 taaaagtgtt tttgaacagt cagatattat gaatcatttg aacctttatg ctatggctgt
     3361 caatgaagaa aacgcagcgg gaggaagaat tgtcacagcc ccaacaaatg gagctgccgg
     3421 tattattcca gctgttctta aatattgtca gcaagctcac gacaggatga gcaacgaaga
     3481 catctacact tattttctga ctgccgcagc gattggaatc ctttataaaa aaggcgcttc
     3541 aatttctggc gctgaagtag gatgccaagg tgaggttggt gttgcctctt ccatggcagc
     3601 tgctggtttg acagcggttc ttggcggaac catcgagcag gttgaaaatg ctgcagaaat
     3661 tgcaatggaa catcatctgg gaatgacctg tgatcccgtt ctgggccttg tgcaaatccc
     3721 atgcatcgag agaaatgcca tgggggctgt gaaagcagtt aatgcaaccc gaatggcact
     3781 cataggtgat ggtcagcatc aaatctcttt ggacaaagtc atcaaaacaa tgaagcaaac
     3841 cggcatggat atgcaaagta tatacaagga aacgtccatg ggtggattgg ctgttaactt
     3901 gcctgagtgt taaaaccggt ttcaaatgca attaaaattt aatacctttc ctaaaa
//
LOCUS       DACVWI010000240         3911 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.241, whole genome shotgun sequence.
ACCESSION   DACVWI010000240 DACVWI010000000
VERSION     DACVWI010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3911
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.241"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            37..255
                     /locus_tag="JBH85_13705"
     CDS             37..255
                     /locus_tag="JBH85_13705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019234702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947252.1"
                     /translation="MELLDAVEALVKNPLLDTVALEDWVLSKSLVESYKNSDTHKIRE
                     LITDKKNFSDMSHVIPYPDMSHVFPVTK"
     gene            264..1034
                     /locus_tag="JBH85_13710"
     CDS             264..1034
                     /locus_tag="JBH85_13710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylase"
                     /protein_id="HAU0947253.1"
                     /translation="MKVVALVGTGIKTIAHITEEAKGYISTCDKVIYLVNEPLLERYI
                     RKLAKSSESLDEIYFNSKSRESAYNNIAQYIYSAIEDVRSLCVVIYGHPCVFATPGLL
                     ALSMLDDSIKTVVCPGISTQDCLYADLRFDPASGGIQSFDATEYLLYDKVVDPSSHVV
                     IYQIGMVGNLGLPTNKINFEALNFIKKKLIELYKKEKKAVIYEAALYPGTHPKISEFD
                     LEQLDRQELTTLSTLYIPPDKIQRMPSSDALRLLNQVA"
     gene            1078..2283
                     /locus_tag="JBH85_13715"
     CDS             1078..2283
                     /locus_tag="JBH85_13715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0947254.1"
                     /translation="MSSTVSSSKVGFSFSDLPVTCKLLLALSFIEAIGGGLSYHIAYF
                     FSVSTNFNKLNIGFLGFSMGIGAILGSICGGYVTGKAQAKGIIGASFLLMGVAFVILA
                     KVSSFHLSVVFVLLMGFGINLFITCSNSSFLQISKNTNHSLTIAQSYKNALENTGGIV
                     AMVLIMLLAQNHFKLAMTLVGVTLILFSIVIFLKLEISNQDVAAKPSNKEEIESVYSS
                     LIPMLFSVFCIGLTYGIQKTVLGIHLNETIGNSLIIGFFFATDPILIALFQVKLSKRI
                     ERFNKHIVACIGCILLGVSTFAMGLSSTIQGMFCSLLVFTLGEMLFMAYSVALCHQYG
                     SSNHSGLGIGAWRSAYALGMMIGPLISGVAMYYFNAQSAWTISSLLCFMSAFLVFNSK
                     RAQRLEAVY"
     gene            complement(2266..3573)
                     /locus_tag="JBH85_13720"
     CDS             complement(2266..3573)
                     /locus_tag="JBH85_13720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947255.1"
                     /translation="MEFCRNFTRVCWDEIREEVKRSNPEFFFLVDEIAPGKDFPLYVF
                     NFGYGDLIGDSETFYIPHQGKLQTLNNFSSQEPITKDLFYGFHSCPLGLVLDKCFEWY
                     LRGDSENETHPVYIDKKGDFFNIGHVTQIKPLKRYLPNGILSVKAGAQTTLVIQNIGC
                     KRSHNRLIRSGIDCTIPNSYHDHSEFFKRIYQSCPAESKWRASIVYFSEKWIDNIVNN
                     PEWININKYFFKYYLHYYAYTYYGDYYQHIFRVAFDKSNLERDFFIQDTAKYIFEILI
                     GEKYGFSFTNTDEFLPASWIGYVLKDIYKLKTEPSILIPKKHVEKNPVYFSLQHPIFR
                     PYQGLSRKRATLISELENMKIVTNKYKELFSSNHEEWAGTILEEKAKKAQFVYYHGFE
                     NKKNWLSDIHHLLKNDSGVHHLSNDTFCQDAPFFKGCISINSF"
BASE COUNT         1242 a          602 c          713 g         1354 t
ORIGIN      
        1 agtgcaaaat tttgattgcc aaattttgga gggactatgg aattattaga tgcagttgag
       61 gcattggtga aaaatccact ccttgataca gtggctttag aggattgggt tttaagtaaa
      121 agcttggttg aatcatataa aaactcagat acacataaga tcagggagtt aatcactgat
      181 aaaaagaatt tttcggatat gagccatgtg atcccgtatc cggatatgag ccatgttttt
      241 ccagtgacca aataaggatt taagtgaaag ttgtagcgtt agttggtact ggaattaaaa
      301 caatagctca tattacagaa gaagcaaaag gatatatttc tacttgtgat aaggtaatct
      361 acttagttaa tgaacccttg ctagagcgct atattcgtaa attagcgaaa tcatcagagt
      421 cactggatga aatatacttt aactctaaat caagagaaag tgcttataat aatattgcac
      481 aatatattta tagcgcgata gaagatgtac gatcattatg tgttgttata tatggtcatc
      541 catgtgtgtt tgctactcct ggcttgctcg ctttgtctat gcttgatgat agcattaaaa
      601 cagtggtgtg ccctggtatt tcaactcaag attgtttata tgccgatctt aggtttgatc
      661 ccgcatctgg aggtatccaa tcctttgatg ctacggaata tcttctatat gataaagtag
      721 tagatccttc ttctcatgta gtaatttacc agattggtat ggttggaaat ctgggtttac
      781 caacaaataa aatcaatttt gaggctctta attttattaa aaaaaaatta atcgaactct
      841 ataaaaaaga aaaaaaagcg gttatttacg aagccgctct ttatcctggt actcatccaa
      901 agatatctga atttgattta gagcaacttg ataggcaaga gttaacaaca ctgtctactt
      961 tgtatattcc tcccgataaa atacaacgaa tgccgagttc tgatgcatta aggttattaa
     1021 atcaagtggc atagtttagt ggatgtatct aatttttatt taatgtgagg gattacaatg
     1081 agctcaacag tcagctcttc taaagtaggg ttctctttta gtgatttacc agtcacttgt
     1141 aaattattat tggctctttc ttttatagag gctattggag gcggcctatc ttaccatatt
     1201 gcgtattttt ttagtgtaag caccaatttt aataaattaa atataggctt cttaggcttt
     1261 tcaatgggga ttggagctat tttgggcagt atatgtggtg gatacgttac gggaaaagca
     1321 caagcaaagg gtataattgg ggcaagtttc ttactcatgg gcgtcgcatt tgttattcta
     1381 gcaaaagtga gttcttttca tttatctgtt gtctttgtat tgttaatggg atttgggatc
     1441 aacttgttca tcacttgcag taactcatct ttcttgcaga tttcaaaaaa taccaatcac
     1501 agtttaacga ttgcccaatc ctataaaaat gcactggaaa atactggtgg tattgtggca
     1561 atggttttga taatgctttt agcgcaaaat cattttaaat tagcaatgac tttggtcggc
     1621 gttactttga tattgttttc aatagttatt tttctaaaat tagaaatcag taatcaggat
     1681 gtggccgcaa aacccagtaa taaagaagaa attgagtcag tctatagctc gcttattcca
     1741 atgttatttt cagtattttg catcggttta acttatggga tacaaaaaac agtactaggc
     1801 attcacttaa acgaaacaat aggaaattct ttaatcattg gatttttttt cgcaactgat
     1861 cccattttaa tcgcattatt tcaagtaaaa ttatcaaaaa ggattgagcg attcaataaa
     1921 catatagttg cttgtatcgg ctgtatttta ttaggggtgt caacgtttgc tatgggcctg
     1981 tcttctacaa tacaaggaat gttttgttcg cttttagtat ttactcttgg tgaaatgttg
     2041 tttatggcgt actccgttgc attatgtcat caatatggaa gctctaacca cagtggccta
     2101 ggtatagggg cgtggcgcag cgcatatgca ttaggcatga tgattggccc tctcatatca
     2161 ggagtagcaa tgtattattt caatgcccaa agtgcttgga caatatcttc tttgctttgt
     2221 ttcatgagtg ccttcttagt atttaattct aaaagagcac agcgattaga agctgtttat
     2281 tgagatgcat cctttaaaaa aaggcgcatc ttgacaaaaa gtgtcattgc ttaaatgatg
     2341 cactccagaa tcatttttta ataaatgatg aatgtccgaa agccaatttt ttttattctc
     2401 aaacccatgg taataaacaa attgagcttt tttggctttt tcttcaagaa ttgtaccagc
     2461 ccattcttca tgattagagg aaaatagttc tttatattta tttgtaacga ttttcatatt
     2521 ttcaagctca gaaattagag tcgctctttt tctggacaac ccttgatatg gtcgaaaaat
     2581 aggatgttga agcgaaaaat atactggatt tttttcaaca tgttttttag gtattaatat
     2641 agacggttct gtttttagct tataaatgtc ttttaaaacg tagcctatcc atgatgcagg
     2701 caagaactca tcggtattgg taaacgaaaa cccatatttt tcacctatga gaatttcaaa
     2761 gatatattta gcggtatctt gaataaaaaa atctcgttct aaatttgact tatcaaaagc
     2821 aaccctaaaa atatgttgat aatagtcccc atagtaggtg taagcataat aatgtagata
     2881 atacttaaag aaatatttat taatattgat ccactcagga ttattaacaa tgttatctat
     2941 ccatttttca gagaagtaaa caatagaggc cctccattta ctttcagcag ggcaagattg
     3001 gtaaattcgt ttaaaaaatt cactgtgatc atggtatgaa ttggggatgg tgcaatcaat
     3061 tccagatcga ataagacgat tatggcttct tttgcatcca atattttgta ttacaagagt
     3121 ggtttgtgcc ccagctttta cagacagtat gccattaggc aagtatcgtt taagtggttt
     3181 tatctgggtt acatgtccaa tgttaaaaaa atcccctttc ttatctatgt aaacaggatg
     3241 cgtttcattt tctgaatcac ctcttaagta ccattcaaag cacttatcta atacaagacc
     3301 taatggacaa ctgtgaaatc cataaaagag gtctttagta attggttctt gagatgaaaa
     3361 attattaaga gtttgaagct ttccttggtg cggaatataa aaggtttcag aatcaccaat
     3421 taaatcacca tatccaaagt taaaaacata tagtgggaaa tcttttcctg gcgcaatttc
     3481 atcaactaag aaaaaaaact caggattaga gcgttttact tcctctctaa tttcatccca
     3541 acaaactcta gtaaaattcc tacaaaattc catattagtc tttttgttaa ttaatttgct
     3601 ttttattttg aattaaaatg cgtatttgcc aaagatttta gtgatataaa tgacaaacat
     3661 attatgctct aatcaaatca agcttgtcaa ataagtaaag tacgttgttg ttgtcgtaat
     3721 aaggatttta atcatgaaga ttgtaagtga acaggttatt aatggagagc gtattgcgac
     3781 tcaggttatt gatacaatct taagcagtac agaacacaat cttgttacat tatccgatat
     3841 atttgggata tctttaaata agcttgttct gaaaaagggg ttttcaaatg atgagatctt
     3901 aatgattgta a
//
LOCUS       DACVWI010000241         3854 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.242, whole genome shotgun sequence.
ACCESSION   DACVWI010000241 DACVWI010000000
VERSION     DACVWI010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3854
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.242"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(86..985)
                     /locus_tag="JBH85_13725"
     CDS             complement(86..985)
                     /locus_tag="JBH85_13725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HAU0947256.1"
                     /translation="MDEQKMISEHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGE
                     ENWRMTGNPLRCGLSLTIPNYGIGYFEQYATQSPHFILRKWDQVQRVLPAQIVASPPV
                     WKPLLTRSYLVTRTYIKPGEYGLFLNRQPALKLLTFLSQGYQASFNYLSEEGFRTTVT
                     LSPIRFQKVYSQYQRCLSGLLPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVD
                     ADVQIDAIKIIGHADDSGRKGYNNAISQYRAESVKNYLIRLGVPQRKLSITWVGALQP
                     IARNDTDEGRAANRRVVVTLIKK"
     gene            998..2077
                     /gene="pyrC"
                     /locus_tag="JBH85_13730"
     CDS             998..2077
                     /gene="pyrC"
                     /locus_tag="JBH85_13730"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HAU0947257.1"
                     /translation="MLFSFIGNNAGTFIMQTLIINRPDDWHLHLRDGEFLTHTVQASA
                     QHFARALVMPNLKPALTNLSAIESYRNRIISAIPKQNSFIPYMTFYLNESVKPEELQQ
                     AASLSYIVGAKLYPAGATTNSEEGAKSLKALYPLFETLQANNLVLQIHGEVTHSDIFE
                     REALFIDEYLKPIAKHFPKLRIVLEHISTKTAVDYVSEGPANLTATITPHHLLYNRNK
                     LLAGGIRPHYYCLPILKHEKDQKALQIAATSGNPKFFAGTDSAPHAINAKENACGCAG
                     IYSAPYAVALYTQIFDELNQLKKLNDFLSRFGAEFYQLPINQQQLELIKSPQTIPNSM
                     PFGSTHVVPIAAGDTINWSINGFSQ"
     gene            2061..2684
                     /locus_tag="JBH85_13735"
     CDS             2061..2684
                     /locus_tag="JBH85_13735"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HAU0947258.1"
                     /translation="MVSRNNILSNTIKNRFRGFLPVVVDVETAGIDPQKNALLEMCIV
                     LLDMDEQGLLKKDSSYFEHILPFPGAELDQKSLEFNQIDPYQPLRFAVDEQTALERLF
                     KPIHDLLKKTRCQRAVLVGHNAWFDLLFIKAAIKRTGIKSPFHAFTCFDTATLAGLIF
                     GETVLAKAAQAAGLHFDSQEAHSAIYDAEKTADLFCLMINKWRMLNI"
     gene            complement(2811..3416)
                     /locus_tag="JBH85_13740"
     CDS             complement(2811..3416)
                     /locus_tag="JBH85_13740"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin C"
                     /protein_id="HAU0947259.1"
                     /translation="MSVLVGRKAPDFTVAAVMGNGEIVDKFNLHEHLKGKYGLVFFYP
                     LDFTFVCPSELIALDHRIEEFKRRNVEVVAVSIDSHFTHNAYRNTPVKNGGIGPVRFT
                     LAADMTHSICQSYGVEHPVAGVAFRGAFVIDTNGMVRSQIVNDLPIGRNIDEILRIID
                     AVQFFEENGEVCPAGWQKGQAGMKASPKGVAEYLSEHSESL"
     gene            complement(3469..3786)
                     /gene="grxD"
                     /locus_tag="JBH85_13745"
     CDS             complement(3469..3786)
                     /gene="grxD"
                     /locus_tag="JBH85_13745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019232721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HAU0947260.1"
                     /translation="MDTLEKIKKQIAENAIMLYMKGTPKMPQCGFSARAVQCIEACGV
                     DFAYVDILANPDIRQVLPQFSDWPTFPQLYVKGELIGGSDIIAEMFQQGELEPMLRDA
                     VAA"
BASE COUNT         1203 a          842 c          690 g         1119 t
ORIGIN      
        1 tctttcaaat gaaatttgtt gaccaagaag ggggttttcg aggatgaaat gccatcatga
       61 aaagatactt ttttaatcac aaaatttatt tttttatcaa tgtcacaaca acacgtctgt
      121 tagcagctct cccctcgtca gtatcattcc tggctatcgg ttgcagagct cctacccatg
      181 ttattgatag ttttctttga ggtactccaa gcctaatcaa ataatttttc acagactctg
      241 ctcgatattg tgaaatggca ttattgtaac ctttacggcc gctatcgtca gcatgaccaa
      301 taatcttaat ggcatcaatt tgtacatcag catccacgta ttgggcaatc cgtcgtaatt
      361 gcactttatc agcatcagac aataacttac tatccacccc aaaatgaaac acgctttctt
      421 ttacatcctc atagttgaaa ggcaacaggc cactcagaca acgttgatat tgtgaataca
      481 ctttttgaaa ccgaataggt gagagtgtaa ccgtagtgcg aaatccttcc tctgataaat
      541 agttaaagct tgcctgatat ccttgcgata aaaacgtcaa taattttaaa gcgggctgtc
      601 gatttaaaaa tagtccatac tccccgggtt taatataagt tcgggttacc agataagatc
      661 tggttaataa cggtttccac actgggggac ttgctacaat ttgagcaggt aaaacccgtt
      721 gaacttgatc ccatttacgc agaatgaaat gaggggattg ggtagcgtat tgctcaaagt
      781 agccaatacc ataatttgga atcgtcaatg acaagccaca tcgaagagga ttgcctgtca
      841 tacgccaatt ttcttctccc atagggcttg cgtattggat agagggagca gcaaagacga
      901 cagtagtaat gaataaagaa ctcattgcaa taatttttgc cttcttgcat ataaaatgct
      961 ctgaaatcat tttttgctca tccaaattgc ctaattcatg ttattctctt ttatcggcaa
     1021 taatgcagga acctttatta tgcaaactct gataattaat cgccctgacg attggcatct
     1081 ccatctcagg gatggagagt ttctaactca taccgtccag gcgtctgccc aacattttgc
     1141 cagagcgtta gtgatgccca atctcaaacc agcactaacc aatttatctg caattgagag
     1201 ttatagaaac agaatcattt cggccattcc caaacaaaac tcctttattc cttatatgac
     1261 tttttattta aatgagtccg tcaaaccaga agaattacag caagccgcct ctctttctta
     1321 tatagttgga gcaaaacttt atccagctgg agcgacgaca aattctgaag agggtgctaa
     1381 atctttgaaa gcactctacc ccctttttga aacattgcaa gcgaataatt tagtcttgca
     1441 aattcatggc gaagtcactc atagcgatat tttcgagcgt gaagcattat ttattgatga
     1501 atacctgaaa cctatcgcca aacatttccc caaattaaga atcgtgctgg agcacatatc
     1561 gactaaaact gccgtggatt atgtttctga agggcctgct aaccttacag caacaataac
     1621 tcctcaccat ttgctttata atcgcaataa gctactcgca gggggcatta gacctcatta
     1681 ttattgtttg cctattttaa aacacgaaaa agaccaaaag gccttacaaa ttgcagcgac
     1741 aagcggaaat ccaaaatttt ttgccggcac tgacagtgcc cctcatgcca tcaatgccaa
     1801 ggaaaatgca tgtggatgcg ccggtattta ttcagctcca tatgcggtag cgctctacac
     1861 gcagatcttt gatgaactta accaattaaa aaaacttaat gattttctta gtcgatttgg
     1921 tgcagagttt taccaactcc ctattaatca acagcaattg gaactcatta aatcacctca
     1981 aactatcccc aactcaatgc catttggatc aactcatgtt gtgcctattg ctgctggaga
     2041 cactataaac tggagtatta atggtttctc gcaataatat tctaagtaac accattaaaa
     2101 atcgctttcg tggctttttg cctgttgttg ttgatgtaga aactgcggga atagaccctc
     2161 aaaaaaatgc tctcctggaa atgtgtattg ttttattgga tatggatgag caaggcttgt
     2221 taaaaaagga tagtagttat tttgaacata ttttaccttt cccgggtgca gaactggatc
     2281 aaaaatcact ggaattcaac caaatagatc cttaccagcc tcttcgtttt gcagtagatg
     2341 aacaaactgc ccttgaacga ttattcaaac ccatccatga cttgctaaaa aaaacccgtt
     2401 gccaaagagc tgttttagta gggcataatg cctggtttga tttgttattc atcaaagcgg
     2461 caatcaaaag aaccgggata aaatcacctt tccatgcctt cacttgcttt gatacagcaa
     2521 cattagcggg tttgattttt ggagaaaccg tattggccaa agcagctcaa gcagccggat
     2581 tacattttga cagccaggag gcgcattctg ctatttatga tgcggaaaaa acagctgatt
     2641 tgttttgcct tatgataaac aagtggcgaa tgctgaacat ctgatatcag aaaaacataa
     2701 atagcctgga ttacctaaaa cagtaaccca ggagtttgat agaaattttc ttgtgttatg
     2761 cttcacaata aaacacaaca acaaaagaat tctatttcct cgcccttata ttacaaggac
     2821 tcggaatgct cagacaaata ttctgcaaca cctttaggag atgctttcat gccagcttgt
     2881 cctttttgcc agccagcagg acacacctca ccattttctt caaagaattg aactgcatct
     2941 atgatacgaa gaatctcatc aatatttcta cctatcggca agtcattgac gatttgtgaa
     3001 cggaccatgc cattcgtatc aataacaaaa gcgcctcgga aagccacgcc agcaactgga
     3061 tgctctacgc cataggattg gcaaatactg tgagtcatgt cagctgccaa agtaaatctc
     3121 acaggcccta ttccgccatt tttcacaggc gtattcctat acgcattatg ggtaaaatgt
     3181 gaatcaatag atacagcaac cacctcaaca ttacgtcttt tgaattcttc aatacggtga
     3241 tcaagagcaa ttaactcgga agggcataca aaggtaaaat ccaggggata aaagaaaact
     3301 aatccgtatt tgcctttcaa atgttcgtgt aaattgaatt tatcaacaat ttccccattg
     3361 cccattactg cagccacagt aaaatcaggt gctttacgcc caactaaaac actcattcta
     3421 taatctccat tagcggtggg tgagtaaatc ccacaattgt tattaaaatt atgccgctac
     3481 tgcatcacgc aacataggct ctaactctcc ttgctgaaac atttcggcta tgatgtcaga
     3541 tcctccaatt aattcccctt tcacataaag ttgaggaaag gtaggccagt cagaaaattg
     3601 tggtaaaact tgacgaatat caggattggc aaggatatcg acataggcaa agtctactcc
     3661 acaagcctca atacactgaa ctgcacgagc ggaaaacccg cattgaggca tcttgggagt
     3721 gcctttcatg tagagcatta tcgcattttc agcaatttgc tttttaatct tttctaaagt
     3781 atccactatg caccttttat aaaataaaaa acccaattat gtcgaaaacc aaacaaggtc
     3841 gcaactaatg attc
//
LOCUS       DACVWI010000242         3825 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.243, whole genome shotgun sequence.
ACCESSION   DACVWI010000242 DACVWI010000000
VERSION     DACVWI010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.243"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            58..1467
                     /locus_tag="JBH85_13750"
     CDS             58..1467
                     /locus_tag="JBH85_13750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947261.1"
                     /translation="MIEVNIWLSTAFLFKKRIKHKFFGPLLASEDKGENVGHVNFTIE
                     IDERTKTKNSFDFIEQHGSELRAKKTLRVVPTKATNTSPPNIESSHLIPTIVRSDIVS
                     HSFWPDARPTKSETIKGKAVKPKFKTHEEDMISEDSVTAMTIIHRKSALDEISREKME
                     DLDFLVEISDLEVNLEQRKLFMDDLKKLQLEKDELIKQQKQLTNSYQTQLKDLKGQLA
                     KLELHLNKTNGQITATERTINYLNKLKNPDPKTKTQLIELTEKLIKLKQEFETTINSQ
                     HEISALISKSELTYHEDLQQVEKKLQQIELAMNHRIEDLKKLDIKINGRDENDLKELQ
                     EEARRRKEYTSRKEQFIKSRDFTEGRQPDYSVTLPTAESGLTYYVDEIKILKAMQEER
                     SQNYSFLFNNCASSAKRCLLAGIDEKLRAKLKETGLGSKFFEISKVETCKSLRDWART
                     LDSKLTELNLRSPAPTRGA"
     gene            complement(1533..1925)
                     /gene="erpA"
                     /locus_tag="JBH85_13755"
     CDS             complement(1533..1925)
                     /gene="erpA"
                     /locus_tag="JBH85_13755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HAU0947262.1"
                     /translation="MANLDVSQNTSDIHFSVSAADKVAELIKEEDNSNLNLRVSITGG
                     GCSGFQYGFSFDEQINDDDTIVIQQCSDGKSSVKLLVDSMSYQYLHDAEIDYIKGIQG
                     EQFVIRNPNAKTTCGCGSSFSIGDEDDL"
     gene            complement(2061..3146)
                     /gene="mnmA"
                     /locus_tag="JBH85_13760"
     CDS             complement(2061..3146)
                     /gene="mnmA"
                     /locus_tag="JBH85_13760"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HAU0947263.1"
                     /translation="MKAKVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHND
                     YCPAAKDLADAQAVCNQLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKE
                     IKFNAFLNHALTLGADYIATGHYAKNTIEGSIGYLFKAKDREKDQTYFLHAVEPEALS
                     KTIFPIGDFTKPQIREFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKPGEIK
                     STGGKTLGQHDGLMFYTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHP
                     MLYSQGLICGPIHWLADYENHLPLTCFAKTRYRQTDQACMISPPDNNQHYVMFSSPQR
                     AITPGQFIVFYEKNQCLGGATIEQIIR"
     gene            3419..>3825
                     /locus_tag="JBH85_13765"
     CDS             3419..>3825
                     /locus_tag="JBH85_13765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein"
                     /protein_id="HAU0947264.1"
                     /translation="MMHLQELAKHGQQEKEVILNERLPSFVSPGCHLHASYHIEAKDD
                     FYLIHLRVQGNLNSVCQRCMENFTVCYNNSTVIAVCRNDERAEQLLSQYECLVSSNWQ
                     VDLNELIIDELHLYAPQVHPDINECANEINEILT"
BASE COUNT         1276 a          673 c          682 g         1194 t
ORIGIN      
        1 ggaaaattat tattcacacg ttcatttata ctcattaatt ttagaagaag tagcgttatg
       61 attgaagtaa atatttggtt atcaactgct tttttgttta agaaacgaat taagcacaaa
      121 ttttttggcc cgcttttagc ctcagaggat aaaggggaaa atgtaggaca cgttaatttt
      181 actatagaaa ttgatgagcg tacaaaaaca aaaaatagtt ttgattttat tgagcaacat
      241 gggtcagaat tacgagctaa aaaaacattg cgcgtcgtac caactaaagc taccaacaca
      301 tctcctccaa acatagaatc atctcatttg ataccaacta tagtaagaag tgatattgtt
      361 tctcatagtt tttggccaga cgcgagaccc actaaatcag aaaccattaa aggcaaagct
      421 gtcaaaccca agtttaaaac tcatgaagaa gatatgattt ctgaagattc ggtaacagca
      481 atgactatta tccatcgaaa atctgcttta gatgagatta gcagggaaaa gatggaagat
      541 cttgattttc ttgttgaaat ttcagatttg gaagtcaact tggagcaaag aaaactattt
      601 atggatgacc ttaaaaaatt gcagttggaa aaagatgaat tgattaaaca acagaagcaa
      661 ttaaccaatt cttaccaaac ccaattaaaa gatttaaagg ggcaattagc caagctggaa
      721 cttcatttga ataaaacaaa cggtcaaatt acagctacag agagaactat aaattattta
      781 aataaactga aaaatcctga tcctaaaacc aaaacacaat tgattgagct tactgaaaaa
      841 ttaattaaat taaaacaaga gttcgagact acaataaatt ctcaacatga gataagcgca
      901 ttgatatcaa aatctgaact gacttatcat gaggacttgc aacaagttga aaagaaactg
      961 caacagattg agcttgcgat gaaccatcgt atagaagatt tgaaaaagct ggatattaaa
     1021 atcaatggca gggatgagaa tgatttaaaa gagttgcaag aagaggcgcg tcgtcgcaaa
     1081 gaatatactt ctcgcaaaga acaattcatc aaaagccgtg attttactga aggaaggcaa
     1141 cctgattaca gcgttacttt gccaactgca gaaagcggtt taacttatta tgttgatgaa
     1201 atcaaaatac tgaaagctat gcaagaagaa cgcagccaaa actattcatt tctttttaat
     1261 aactgtgcca gtagtgctaa acgttgtttg ctagcaggaa tagatgaaaa attgcgagcc
     1321 aagttaaaag aaacaggttt aggtagcaaa ttttttgaaa tcagtaaagt agaaacatgc
     1381 aagtcattac gtgattgggc aagaactctt gatagtaaat tgacagaact taatcttcga
     1441 tctcctgctc ctacccgagg tgcttaagaa taataagcag ttcgtccgta aaaagctaag
     1501 atcactgcct tgagtttcag gcagtgattt ttttataaat catcttcatc accaatacta
     1561 aacgaagagc cacaaccaca agttgttttt gcattagggt tgcgtatgac aaattgctct
     1621 ccttgtattc ctttaatgta atcgatttcc gcatcatgca aatattgata actcattgag
     1681 tcaactagca atttgacaga ggattttcca tcagaacatt gttgtatcac aatagtgtcg
     1741 tcatcattga tttgttcatc aaagctaaat ccgtattgaa atccagaaca accaccgcct
     1801 gtaattgaaa ctcgtaaatt caaattggaa ttatcttctt ctttgattag ttctgcgact
     1861 ttatctgctg cactgacaga aaaatgtata tctgaagtat tttgtgatac gtcaagattg
     1921 gccatactaa gctccaaaat aattactacc tctacaattc attatatcaa taatacaagt
     1981 tgtttcgtag tctcaatcca taaattggta ttagggacca gagaaaacaa acagtgccaa
     2041 tacaaaatta gcttccctgt ttagcggata atctgctcta tagtagctcc gcccaagcat
     2101 tgattttttt cataaaagac gatgaattgc cccggagtaa tcgcacgttg aggacttgaa
     2161 aacatcacat agtgttgatt attatccgga ggagaaatca tgcaggcttg atcggtttgc
     2221 ctatatcttg ttttagcaaa gcaggttagt ggtaaatgat tctcatagtc tgccagccaa
     2281 tgaatgggac cacatatcaa accttgagaa tagagcattg gatgttgact gccctgtgct
     2341 acgtaaaggg tgttactggc tatgtcttta tccacgacat accatggctc atctgtcgag
     2401 ttttgtaatc ctccaattcc caaaccctgg cgttgtccta atgtgtaaaa cattaaacca
     2461 tcatgttgac caagtgtttt tccccctgta ctttttattt ctcccggttt ggcaagtatg
     2521 aattcattaa gaaaagtttt gaatcttttt tcacctataa agcaaatacc tgtagaatct
     2581 tttttggcat gagtgacaag gccaagttgt ttagcgaatt ctctaatttg tggcttagta
     2641 aaatcaccta ttggaaaaat ggttttggac aatgcctctg gttcaacagc gtggaggaaa
     2701 tacgtttgat ccttttccct atcttttgcc ttaaataaat agccaataga tccttctatt
     2761 gtatttttgg catagtggcc agtagctata taatctgcgc caagggttaa agcatgattc
     2821 aaaaaggcat taaatttgat ttctttatta cataacacgt cagggtttgg tgttcttccc
     2881 ttttcatatt cactcagaaa ataagcaaat actctatccc agtattcttt tgaaaaattt
     2941 acagtatgta gtggtatgcg caattgatta cagacggcct gggcatctgc caaatctttt
     3001 gctgcagggc aataatcatt gtgatcgtcc tgctcccagt ttttcatgaa tagtccttcc
     3061 acctggtatc cttgttcttt caatagccag gctgctacag aagagtctac tcctcctgac
     3121 ataccaacaa taactttagc tttcataaat ggtttgtatc gctctttttt gaatcataat
     3181 catattggaa tgtgcgattt taacaaatta actacactct aggaaattgt aatttagccc
     3241 tgtatttatt acccaataag ttgatatttt ttacatataa tcggataata ccacgttttt
     3301 agggattcgt tatcatttta acttgattat gttagtaagt cataaaccgt ctataagtgc
     3361 ttatataaac ttgcaagact caaagagcaa actcattcta tatttcggat aattatctat
     3421 gatgcattta caagagttgg caaaacatgg ccagcaagaa aaggaagtga ttttaaacga
     3481 gcgtttaccc tcgtttgtta gtcccggatg ccatttgcat gcatcttatc atatagaggc
     3541 aaaagatgat ttttatctta ttcatcttag agtgcaaggc aatttaaaca gcgtatgtca
     3601 gcgatgtatg gaaaacttca ctgtatgtta taataactcg actgttattg ctgtttgccg
     3661 aaatgatgag agagctgagc aacttttgag tcaatatgaa tgcttggttt cttcaaactg
     3721 gcaagttgat ttaaatgaat taataattga tgagctgcat ttgtatgcac cacaagttca
     3781 tcctgatatt aatgaatgtg ctaatgaaat caatgaaatt ttaac
//
LOCUS       DACVWI010000243         3795 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.244, whole genome shotgun sequence.
ACCESSION   DACVWI010000243 DACVWI010000000
VERSION     DACVWI010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.244"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            181..957
                     /locus_tag="JBH85_13770"
     CDS             181..957
                     /locus_tag="JBH85_13770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947265.1"
                     /translation="MRGKKEFLKHEYSPGHWSIDYTRAGTSIAVITVRNKYHYSVILN
                     PTDCRGYRIIIRYLNEGDSTLSSAFNRPYTVSEQRGLNDVASLMTQVYEKLGLIVQFS
                     QLGNNSQSFDKGTGVTLIGSEEEPSMLHLHMWGRGDPDMEYIAGVPLRGPEPGLMFDL
                     IAKNKTHPINQHAIKWNEEELKACLAMFKLKLAEYVNSPEFTEEFGDTLKVTIHDKKD
                     LGEAKESSFGFFHKMKSASDGITTLEKTLALEDDKINPFA"
     gene            1133..1351
                     /locus_tag="JBH85_13775"
     CDS             1133..1351
                     /locus_tag="JBH85_13775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947266.1"
                     /translation="MQIFYLFEFNLSTAQLMVIKKLMNMFKALVYTLPEWHLLALSLW
                     HNLFILFQDKGQTSLNKHHRKVRNAAVK"
     gene            complement(1636..3636)
                     /gene="ceg14"
                     /locus_tag="JBH85_13780"
     CDS             complement(1636..3636)
                     /gene="ceg14"
                     /locus_tag="JBH85_13780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg14/sidL"
                     /protein_id="HAU0947267.1"
                     /translation="MQNLDEILKKLRKDLKKTSKETTEKLSVLSKKVAEDVVKVSNQT
                     VQKINEVTKKFTVDTTVSTIDTQKILDDFMKNIRFSRFKQIWQAIEKTPKSKHILLKS
                     LFLKGLLTHNKPLLEEIIRQIELIPYSSDLEMLGAFSQDKAHPLSPELLEFVQEMLAN
                     ESEKVLLTILMNAFQSIPELSLDSKTGTLSMKTKKALLPLLIEKVDTSIAKSIMSQLT
                     DISFDSVLPAFRPSIGDPSYQKTNINLNKYLSLVGNKTDISEFLILTIGLFTSLKIGD
                     KGFLQELSADYLFVRYDDCLHKIIEKLKEKEVIEQLGEKEVQKILEASGNLKRFKPTS
                     NNPRRFFETRLAQYINGLSHSEKTIEIDSIGEDKEPEDEELRDNTLKACNKILQFFLG
                     DCGRVDTPREMEQKICIFANGYKDTSKFTKKEVEFITGVLHHAGAHKGRDRVERDKLT
                     GIKERKFETDSEKVGSDVWNCGGGVMKGCSPVFYDAQRDPMRNMLVDSSTVAPDNKEG
                     KQWFWNNNRQYSSYVGSISGHTCNIVGMLAKYMTEYKEDLDLQNDINLFLIQVIGVYA
                     KRGFHAMLEVIDVLHDPYVQDIFKGYGVQVNLYSYFKENPELAGFLQHAMNDATTYTQ
                     ALVNKKHVKEALKSNSFFSKKDEESGDKKNDHTPKDGTVYGC"
BASE COUNT         1184 a          727 c          653 g         1231 t
ORIGIN      
        1 ttaaaagttg ccatattaat gacaaactgt aaaaccagta acactttgct attaaaaccc
       61 attctgggat atagttgttt taatttttct ataagtgtct ttattttaat tttgttttat
      121 atcccgctga catcaggcac atgttgggca aaaaaaagtg taaatcacaa tgaggttgta
      181 atgagaggaa aaaaagaatt tttaaaacat gaatactccc ctggccattg gtcaattgat
      241 tatactcggg caggcacctc aatcgcagtt atcactgtcc gaaataaata tcattactct
      301 gtgattctta accctactga ttgtagaggt tatcgtatca ttattcgata tctgaatgag
      361 ggtgattcaa ccctttcatc tgcttttaac cgcccttata ctgtatctga acaacgcgga
      421 ttgaatgacg ttgcaagttt gatgacccaa gtctatgaaa aattagggct tattgtgcag
      481 ttttctcaac ttggcaataa ctcccagtct ttcgacaaag ggacaggagt aactctcatt
      541 ggaagtgaag aagaacccag tatgcttcat ttgcatatgt ggggcagggg tgatcctgac
      601 atggaatata tcgccggtgt tcctcttaga gggcccgaac ctggtttgat gtttgattta
      661 attgcaaaga ataaaactca ccctattaac caacatgcca taaaatggaa tgaagaggaa
      721 ctcaaagcct gtcttgccat gttcaaactt aaactggctg aatacgttaa ttcaccagag
      781 tttactgaag aatttggtga taccctaaaa gtgactattc acgacaaaaa agatcttggt
      841 gaagcgaagg aaagtagttt tgggtttttc cataaaatga aatctgcatc agatggtata
      901 acaactttgg aaaaaacctt agccctggaa gatgataaaa taaatccctt cgcataatcg
      961 acagagcaca taaatggtat cgtctcttta ttgtactcga atttcagcca ggaaaagtgt
     1021 caaaatttcc ggataaaaat gttttcagcc agcgactatt aaccatgcgt acccacttgt
     1081 ctacctgttg ctactaccaa cttgatagtg gataatacta tgaaacacat atctgcagat
     1141 tttttatctg ttcgaattca atttatcaac agctcaattg atggtcatca aaaaactgat
     1201 gaatatgttt aaagcacttg tatacaccct accagagtgg catttattag cattaagcct
     1261 ctggcataac ctgtttattt tgtttcagga caaggggcaa acgtctttaa ataagcacca
     1321 cagaaaagtt cgcaacgcgg cagtaaaata aaaataacag gttatgcaaa gcagtctatt
     1381 cgtctcggca aaagagtgca tcaacacata caacgaagta caagctatag gtctattatg
     1441 aaagccacga aacctataga gaagagaagt tgcttgtctt taaaaaaatt taaaaacgag
     1501 ctagacaata gagcaaaaat caatcttgtc caggggtgat ttattcgaaa agatatattc
     1561 ttaatgcaaa atttccctga atttgatgcc tcggacaagc cgaggctatt agggaatggg
     1621 aacccaaatt atcctttagc acccataaac agttccatct tttggcgtat ggtcgttttt
     1681 cttatctcca ctctcttcgt ctttcttact gaagaatgaa tttgatttga gtgcttcctt
     1741 aacatgcttc ttattaacaa gagcctgagt ataagtggtt gcatcattca tcgcatgctg
     1801 caggaatcca gcaagctcag ggttttcttt aaaatagcta taaaggttaa cttgaacacc
     1861 atatcctttg aatatgtctt gtacataagg atcatgaaga acatcaatga cctcaagcat
     1921 ggcatgaaaa ccacgcttgg cataaacacc gattacctga ataagaaaaa gattgatgtc
     1981 gttttgcaga tcgagatctt ctttatattc tgtcatatac ttggctaaca tacctacaat
     2041 attacaagta tgcccggaaa tcgatcctac gtaagacgaa tactggcggt tattattcca
     2101 aaaccattgt tttccctctt tgttatcagg cgcaacagtc gatgaatcca ctagcatatt
     2161 acgcatgggg tcgcgttggg catcataaaa gacaggcgaa cagcctttca tgactccacc
     2221 gccacaattc catacatctg aacctacttt ttctgagtca gtctcaaatt ttctttcttt
     2281 aatgcccgtc aatttatccc gctcaaccct atcgcgccct ttatgcgctc cagcatgatg
     2341 taatacaccg gtaataaatt cgacttcttt cttggtaaat ttagaggtat ccttataacc
     2401 attggcaaag atacaaattt tttgttccat ctctcgtgga gtatcaactc ttccacaatc
     2461 acccaaaaag aattgcagaa ttttattaca tgccttcaat gtgttatctc tcaattcctc
     2521 atcttcaggc tctttatctt ctcctatcga atcaatttca atggtctttt ctgagtggga
     2581 aaggccgtta atgtactgag caaggcgagt ttcaaaaaat cgtcttgggt tattacttgt
     2641 cggtttaaac cgcttaaggt ttccagaagc ttccagaatt ttttgaactt ctttttctcc
     2701 taattgttct attacttctt tttcctttag tttttctatt attttatgca agcagtcatc
     2761 atatcgaaca aataaataat cagccgataa ttcttgcaaa aaccccttat ctccaatttt
     2821 taaggaagta aaaagaccaa tcgttaatat taaaaattct gaaatatctg ttttgttacc
     2881 aactagagac aagtatttgt tcaagtttat gttcgttttc tgatagctgg gatcaccaat
     2941 cgatggacga aatgcgggta atacagaatc aaatgagata tcagttaatt gtgacatgat
     3001 tgattttgca atcgaagtat ccactttttc aattaaaaga ggcagtaagg cttttttagt
     3061 tttcatgctt aaagtccctg tcttgctatc aagagacaat tcaggaatag actgaaaagc
     3121 attcatcaga atagtgagta atactttctc actttcattg gcaagcatct cttgcacaaa
     3181 ctccagaagc tcaggtgaga gcggatgtgc tttgtcctga ctaaaagcac cgagcatctc
     3241 cagatcactt gagtaaggta ttaattcaat ttgtcgtata atttcttcaa gtagaggttt
     3301 attatgagtc aatagccctt ttaagaagag agattttaac aatatatgct tggatttcgg
     3361 tgttttctca attgcttgcc aaatctgctt aaatcgagaa aaacgtatat ttttcataaa
     3421 atcatctaaa attttttggg tgtcaatagt gctgactgta gtatctacgg tgaatttttt
     3481 ggttacttcg ttaatttttt gaaccgtttg attggatacc ttaaccacat cttcagcaac
     3541 tttctttgat aaaacactga gcttctcagt cgtttccttc gaagtctttt tcagatcttt
     3601 tctcagtttc tttagaatct catctaagtt ttgcatataa ccctctacct cttagcattg
     3661 tcatgtttga caacttatat ttcacagggg gtatgataaa acacaaagat taagaaaata
     3721 ttaaacttat tgttcaaaat taaaaaaaag tgttgtttat ttaaattacc acctgaattg
     3781 atctaaataa ttatt
//
LOCUS       DACVWI010000244         3765 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.245, whole genome shotgun sequence.
ACCESSION   DACVWI010000244 DACVWI010000000
VERSION     DACVWI010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.245"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            39..2867
                     /gene="ceg32"
                     /locus_tag="JBH85_13785"
     CDS             39..2867
                     /gene="ceg32"
                     /locus_tag="JBH85_13785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg32/SidI"
                     /protein_id="HAU0947268.1"
                     /translation="MTKIYLLTAPFDEEAKTGDGQYAASLELGFAENYEHIPCKWLKK
                     DKGDYSIPFPTGTTSIPEETIPSAIVLQPVANENTVISGYKLKDTVSSPEKAQEVNNK
                     TVSPRTPKIIVKHDNSLQSLTIMDIYSQKPIQFDESKVDEIIHSLETKKVNLEKAIED
                     NNAELSKIKKQKSKLAYLTRLYKENKENIQDYCTLNEYIEAHLFNPKFLSRHEKALNN
                     FKALKSQFTGPVNLKELEKLTDKLTGIKEYSYDFHSNSLPYDLEHDKSFRNFYDFDGL
                     KESIESIIKELEVLNSIRQAVSDKYPNSFKALNETEEHDDKLKFINIIFNDGFSTTYD
                     QQTFIKALSALDIEKAIDAYTNVKNKLENTQDIIANKEGCRNKLISELQTLIANKQEP
                     YLSANEKLGGFYSKRKLSASEGFHLAYQANRRDPIKPEVIENIITKMKPIDEDTHLDI
                     HIRPPDCGVFITPEDIKKFQEAGIKVNITIHEYKQNYTRRYLQQYTHDLMRQANSVQF
                     FNAEDRENAIIAATYGDCDKRNTTEPTGVAKKIREVGEDFDLDKYPVQKYDLKGKSGL
                     TVASQKLSTEPDHPLDVVAKAPNILSFGTIRPGKGFEEALKLAQLIKDNSLSIHEKIK
                     RVPIVKLAGDPQDKALMKQIVVERFGKTAVKTYQKTHPYDNRFNNSQRRDYWKNLVRE
                     LNAKVKEEVAVLNNPYIEIYPWCEPHELLDLKQNCKYVCRMDDMGMRNNGSAIISVLD
                     VGVVYTKFGSVTDDIFIKGGKYGNAVDIGEYRYGKYSLLKKEKEFKEQHEEEPLPKWL
                     IKNPDSAYKRQSESRDPKDILDSIVAREENQLICDNIEDSDNYRTVVEAQKLLKERFT
                     LKNAVDHLLENIGLGHLIAQEEVDELFETVDPVQAQIDNLDILSDIKTPRLCLSRSCP
                     ELGFFGSRRGDLEAKQENNKLKESILVF"
     gene            2869..3756
                     /locus_tag="JBH85_13790"
     CDS             2869..3756
                     /locus_tag="JBH85_13790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2505 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947269.1"
                     /translation="MIKGKLMPNSLKDVQKLICDEGITDNVITTLSRLKPFDLAMLKA
                     TSDNKVKTLLDSDELKPFWVNKFNKLRLEKDHIFQFRNPDPQSRADFYCGYVLYLAAL
                     KEKQKEISSYYDYLNLSFTTFNCFYAAQEILTFLIGACKNDTKRENIDLLYNFVTSQS
                     TQIQEHKTPGCLLLANAYFYLAGFYLSLDLKAESIECYKECWGQLHLAQLLETDSERE
                     IHNAYFNKGLATSNAFGLNSISEIKARCLDLASEALPYPARNVMEANAVKTFENRFKD
                     SMSTAGKDDERSITRPIIL"
BASE COUNT         1420 a          621 c          678 g         1046 t
ORIGIN      
        1 agatattcac catgacaaaa attttactaa agtaatttat gactaaaata tacttattaa
       61 ctgcaccttt tgatgaagaa gcaaaaacag gtgatgggca atacgcggcc tctttagaat
      121 tgggttttgc tgaaaattac gaacatatcc cctgtaaatg gttaaaaaaa gacaaaggtg
      181 attacagcat cccattccca acaggaacca cttctatacc ggaagaaacg ataccaagcg
      241 caatagtatt acagccagtt gctaacgaaa atacagtaat aagcggttat aaattaaaag
      301 atactgtttc atctccagaa aaagcacaag aagtaaataa caaaacggtc agtcccagaa
      361 caccaaaaat tattgtaaag catgataata gcctgcaatc acttacaata atggatattt
      421 actctcaaaa acctatccaa tttgatgagt caaaagttga tgaaataatt cactctttag
      481 aaaccaaaaa agtaaacctg gaaaaagcta tagaagataa taacgctgag ctgagtaaaa
      541 ttaagaaaca aaaatccaaa ttagcgtatt tgactagatt atataaggaa aacaaagaga
      601 atattcaaga ttattgcacc ttaaatgaat atattgaggc tcatttattt aatcctaaat
      661 ttttaagcag acatgagaaa gcactcaata attttaaggc acttaaaagc caatttactg
      721 gccctgtcaa tttaaaagaa ctggaaaaat taacagataa actgactgga attaaagagt
      781 acagctacga tttccatagt aacagtttac cctatgattt agagcacgat aaaagtttca
      841 gaaattttta tgattttgat ggattaaaag aatctattga aagcattatc aaggaattag
      901 aggtgcttaa cagcattcgt caggctgtat cagacaagta ccccaatagc tttaaagcgc
      961 taaatgaaac agaagagcac gacgataaat taaaatttat caatattatt ttcaacgatg
     1021 gatttagcac cacttatgac caacaaacct ttatcaaggc cttatcagct cttgatattg
     1081 aaaaggcaat tgacgcttat acaaatgtta aaaacaaact ggaaaacact caggatatta
     1141 tcgccaataa agaggggtgt agaaataagt taatttcaga attacaaact ttaattgcaa
     1201 ataaacaaga accttacctc tctgcaaatg aaaagcttgg cggtttttac agtaaaagaa
     1261 aactctccgc aagtgaagga tttcatttag cctatcaggc aaaccgacgt gacccgataa
     1321 aacctgaagt gattgaaaac attattacca aaatgaaacc cattgatgag gatactcatc
     1381 ttgatattca tattcgtcca ccagattgcg gggtctttat tactccagaa gacatcaaaa
     1441 aatttcaaga ggcaggtatt aaagtcaata tcacaatcca tgaatataaa cagaactaca
     1501 ctcgacgtta tttacaacaa tatactcatg atttaatgcg ccaggcaaac agtgtgcaat
     1561 tctttaatgc agaagataga gaaaatgcta ttattgccgc tacttatggt gattgtgata
     1621 agcgcaatac aactgaaccg actggtgttg caaaaaaaat aagagaagtc ggggaagatt
     1681 ttgacttaga taaatacccg gttcaaaaat atgatttaaa aggaaaatca ggattaaccg
     1741 ttgcatcaca aaaattaagt actgaaccgg atcatccatt ggatgtagta gccaaggccc
     1801 ctaatatctt atcttttggt acgattcgtc ctggcaaagg gtttgaagaa gcgttaaagc
     1861 tggctcaatt gatcaaagat aactcccttt ctattcatga aaaaataaaa cgggtaccta
     1921 ttgtaaaact ggcaggtgac ccacaagaca aagctttaat gaaacaaata gttgttgaaa
     1981 gatttggtaa aacagcggtc aaaacttatc aaaaaactca tccctatgat aatcgattca
     2041 ataatagtca gcgcagagat tattggaaaa atttggttag ggagttaaat gcaaaagtta
     2101 aagaagaagt cgctgttctt aataatcctt acatcgaaat atatccttgg tgtgagccgc
     2161 atgaattgct ggatttaaag caaaactgta aatacgtttg tcgaatggat gacatgggca
     2221 tgagaaacaa tggctcagca attatcagtg tattagacgt tggagtcgtt tatactaaat
     2281 ttggttctgt tacagacgat atttttatta aaggcggcaa atacggcaat gccgttgata
     2341 ttggagaata tcgttatggg aaatacagtc tgttaaaaaa ggaaaaggaa tttaaagaac
     2401 agcatgagga agaaccacta cctaagtggc taatcaaaaa tccagactct gcttataagc
     2461 gacaatcaga atcgagagat ccaaaggata ttttagactc cattgttgca agagaagaaa
     2521 atcaattaat atgtgataat atagaagatt ccgataatta tcggacagta gtcgaagcac
     2581 aaaagttatt aaaagagcgc tttacactca aaaatgctgt agatcattta ttagagaata
     2641 taggactcgg ccatttaatt gctcaagaag aggtcgatga attatttgag acagttgatc
     2701 cagtgcaagc acaaatagat aatttagaca ttctttctga tattaaaaca ccacgtctgt
     2761 gtttatcacg ctcttgccct gagctaggtt ttttcggctc acgtcgtggt gacttggagg
     2821 ctaaacaaga aaataataaa cttaaagaat cgatactggt attttgatat gataaaagga
     2881 aaacttatgc ccaactctct gaaggatgtg caaaaattaa tttgtgatga aggcatcaca
     2941 gataatgtaa ttacgactct atccaggtta aaaccatttg atttagccat gctcaaagcc
     3001 actagtgaca acaaagttaa aacgctactg gatagtgatg aattaaaacc attctgggta
     3061 aataaattta ataaattgcg attagaaaaa gatcatattt ttcaatttag aaacccggat
     3121 ccgcaatcaa gagctgattt ctattgtgga tatgttttat atttagcggc attaaaggaa
     3181 aaacaaaaag aaatcagtag ttattatgat tatcttaatc tttccttcac aacatttaat
     3241 tgcttttatg cggctcagga aattttgacg ttcttaattg gtgcttgtaa gaatgacacc
     3301 aaaagagaaa atatcgacct tttatacaat tttgtaacta gccaaagcac tcaaatacaa
     3361 gaacacaaaa cgccagggtg cttattgctt gctaatgcgt atttttatct tgctggattt
     3421 tatctgagcc tggatcttaa agcagaaagc attgaatgtt ataaagaatg ctggggacaa
     3481 cttcatttgg cacaattatt agagacagat tctgaacgag aaattcacaa cgcatacttt
     3541 aataagggat tagcgaccag taatgcattt ggtttgaatt ccatatcaga aattaaagct
     3601 cgatgccttg acttagcctc agaagcatta ccttatccgg ctcgaaatgt gatggaagca
     3661 aacgctgtaa aaacctttga aaatagattt aaagacagca tgagtacggc tggtaaagac
     3721 gatgagcgca gtataactcg accaattatt ttataatata gtccg
//
LOCUS       DACVWI010000245         3762 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.246, whole genome shotgun sequence.
ACCESSION   DACVWI010000245 DACVWI010000000
VERSION     DACVWI010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3762
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.246"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            25..543
                     /locus_tag="JBH85_13795"
     CDS             25..543
                     /locus_tag="JBH85_13795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F-box protein"
                     /protein_id="HAU0947270.1"
                     /translation="MKKNFFSDLPEETIVNTLSFLKANTLARIAQTCQFFNRLANDKH
                     LELHQLRQQHIKRELWGNLMVAARSNNLEEVKKILKKGIDPTQTNSYHLNRTPLLAAI
                     EGKAYQTANYLWRKYTFDPNFKDNYGDSPISLLKKQLANPAFKDKEKKQIRALIRGMQ
                     EEKIAQSKCLVC"
     gene            complement(574..993)
                     /locus_tag="JBH85_13800"
     CDS             complement(574..993)
                     /locus_tag="JBH85_13800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011216053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0947271.1"
                     /translation="MRAKNDECTHVLLVDDDEVDLMSVQRALTKLSIPVCFHIARDGV
                     EALEQLSGNIKATKPKIIILDIMMPKMNGIEFLRELRSHIHYNPIKVVIFTTSSNIRD
                     KQATTGLDIAGYFVKDSQFNEFVYCCKHLLEKKSHLS"
     gene            complement(983..3433)
                     /locus_tag="JBH85_13805"
     CDS             complement(983..3433)
                     /locus_tag="JBH85_13805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HAU0947272.1"
                     /translation="MRRENTKSNIDFKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATM
                     VSRKQILGKNVFDAFPDNPNDPKATGAKNLYASLLRVLKNKSADTMAIQKYDIQRPAD
                     RGGGFEERYWSPINTPVLGADQEVEYIIHRVEDVTEFVHLKKTGSAQLKLMEELRTKA
                     GEMEIEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILDPLE
                     MLLAEKKLPSFVQNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQ
                     QTIALFEAQIPERKLVFSMDLPDELQAQIDPDKIQHVLINILSNAIKFTPQNAKVRIR
                     LVQINPETCRLQIEDNGPGIPSDLCETIFERFFQIEESTTRTVGGTGLGLSIAKDFVE
                     LHGGSILAGNARNGGAIFTIELPLKAPQNAKVYSSYSQLLLGEKEISASLAEFRNKVK
                     PIKEGAEEYFEQDYYDRPLILVVEDNQEMNHFICKILNTFYRTESAFDGREGLQKSLA
                     LHPDLIVSDIMMPHMSGVEMVHAIREHPLLLKTPIIILTAKADDELTARMLEEGAQDY
                     VIKPFSAKEFKARVANLILVKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEEDLGE
                     MLSEQSKKYLLLLRQRASRMSKLLDGLLKYAQSGYVFDKVRTIHTDRLITDIIKKLNP
                     PQTVTFQLEDTLPVLNTCELPLREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFF
                     VADDGPGIEKKYQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVESEKNK
                     GSVFRFLWPKDKEIGDAC"
BASE COUNT         1155 a          792 c          632 g         1183 t
ORIGIN      
        1 ttttaatcat cactatttgc tgctatgaaa aagaattttt tttctgatct tcctgaggaa
       61 acaattgtca atacattgag tttcttaaaa gcaaacacac tagctcgtat agctcagaca
      121 tgtcaatttt ttaatcgctt ggctaatgat aaacatctgg agctgcatca actaagacaa
      181 cagcatataa agcgagagct atggggaaat cttatggtgg cggcaagaag caataacctg
      241 gaagaggtca aaaagattct aaaaaaagga atcgatccaa cccagaccaa tagctaccac
      301 ttaaatagaa cgcctttact tgcagctatc gaaggaaaag catatcaaac tgcaaattac
      361 ctctggagaa aatacacttt cgatcccaat tttaaagata actatggtga ttcacctatc
      421 tctcttctta aaaagcaact ggcaaatcca gccttcaagg ataaggaaaa aaaacaaata
      481 cgcgccttaa ttaggggaat gcaagaagaa aaaatagcac agagcaagtg ccttgtttgt
      541 taaagctgtt aaattaaaca gatcgcgtct ggtctatgat agatgtgatt ttttttccag
      601 caagtgtttg cagcaataaa caaactcatt aaattgagag tcttttacaa aatatcctgc
      661 tatatccaaa cctgttgttg cctgcttatc ccggatatta cttgatgtcg tgaagataac
      721 aaccttaatc ggattataat gaatatgaga acgcaattct ctgagaaatt ctataccatt
      781 catttttggc atcatgatat caaggatgat gattttaggc ttggtcgctt tgatatttcc
      841 agagagttgt tcgagagctt caacaccatc acgagctata tgaaaacaaa ctggaatact
      901 caattttgtc agcgctcttt gaacagacat taaatcgact tcatcatcat caaccaataa
      961 aacatgggta cactcatcat tcttagcacg catcgccaat ctccttatct tttggccata
     1021 aaaaacgaaa gacgctgcct ttgttttttt ctgattccac agaaatttta cctccttgaa
     1081 actcgactat tttcttagca atgctcagac ctacaccact tgtttcaagt ttgtccctgg
     1141 gttgtaaggt ctgaaataat tgaaaaattc tgtcttgata ttttttttct attccagggc
     1201 catcatccgc tacaaaaaac tcataaaacc gatccttttc ttttgtacca atgatgatat
     1261 gtccatcttt acggtgatga tgcctgatac tgttatcgag aagcgctgta aaaacctctc
     1321 tcaaaggaag ctcgcaagta ttcaatactg gtagtgtatc ttcgagttga aacgtgacag
     1381 tctgcggagg attcaatttc tttatgatat cagtaatcaa tctatcagtg tgaattgtac
     1441 gaaccttatc aaaaacatat cctgattgag cgtatttaag caatccatcg agcaactttg
     1501 acattcgtga agcacgttga cgcaagagca gtaaatattt tttagattgt tcagaaagca
     1561 tttcacccag atcttcttca atccatgaga tcaaatgctc catagcaggc agaggcgctt
     1621 ttaaatcatg tgatgcgtga tagacaaatt gatccagctc atcttcagct ttcttcacca
     1681 aaatcaaatt agcaactctg gctttaaatt ccttggccga gaatggtttt atcacataat
     1741 cctgagcccc ttcttccaac atacgtgcag ttaattcatc gtctgctttg gcagttaaaa
     1801 taataattgg agttttcaat agcagggggt gttctctaat agcatgcacc atttcgacac
     1861 cgctcatatg aggcatcata atatcactaa caatgagatc tggatgtaaa gcaagcgatt
     1921 tttgcaaccc ctcccgacca tcaaaagcac tttcagtacg ataaaaagtg ttcaatattt
     1981 tacaaataaa atgattcatc tcctgattgt cttctactac caggatcagc ggtctatcgt
     2041 aataatcctg ttcaaaatac tcttcagccc cctccttaat tggttttact ttatttctga
     2101 attcagcaag actcgcgctt atttcttttt cccccaataa tagctggcta taggaagaat
     2161 aaacctttgc attttgaggc gcttttagtg gtaactcaat ggtaaaaatg gcaccgccat
     2221 ttctagcatt ccctgccaaa attgaacccc catgtaactc aacgaaatct tttgcaatcg
     2281 ataaacccaa cccagttccc cctaccgtac gagttgtaga ttcctcaatc tgaaaaaaac
     2341 gctcgaatat agtttcacaa agatcagaag gaatacccgg tccattatct tctatctgaa
     2401 gcctgcatgt ttcaggattg atttgcacta atctaatcct tactttcgca ttttgtggtg
     2461 tgaattttat ggcatttgac aaaatattga ttaaaacatg ctggattttg tcgggatcta
     2521 tttgtgcttg caattcatca ggcaaatcca ttgaaaaaac aagcttgcgt tcgggaatct
     2581 gagcctcaaa caatgcaatt gtctgttgaa ttaattttac caaatcaata ttggcataat
     2641 gaagaatcat tttgccagca tccagctttg atatattcag caaatcattg acatgtttta
     2701 gtaaaatttg agcattattt tgtatgcgcc ttaatgtatt ctgaacaaat gagggaagct
     2761 ttttttcagc aagcaacatt tccagaggat ctagtatcag cattaatggg gtacgaagtt
     2821 catgactgac attagcgaaa aattgggttt tgatttgatc aagtctagcc agatttttat
     2881 tagcctcttc caactgcttg tttgcttcct gaatttcctg ggcacgctga tagatttcaa
     2941 tctccatttc cccagccttg gtacgcagtt cttccatcag cttcagctgc gctgaaccag
     3001 ttttttttaa gtggacaaat tccgtaacat cctccacacg atgaataata tattccactt
     3061 cctgatcagc ccctaaaacc ggagtattaa tagggctcca ataacgttct tcaaatcccc
     3121 ctcctcgatc tgcaggtctc tgaatatcat atttttgtat agccattgta tctgctgatt
     3181 tgttttttag aacccttagt agcgatgcat ataggttctt agcacctgtt gcctttggat
     3241 cgtttggatt atcaggaaaa gcatcgaaga cattttttcc caaaatttgt ttgcgactca
     3301 ccattgttgc ctgtaagtag gcatcactga ctccgacgat attaaaatcc ctgtccaata
     3361 aaaggtataa atccggcagg gaatcaaata tagatttaaa atctatattt gatttcgtat
     3421 tttcccttcg catagagcat cctccttcct ctatgtaagg cctattgact ataaagcatt
     3481 acacaagtct ttgcgaggct ggccatgaat ccaatgtaca attttcaaca cagggtatga
     3541 atagccaatt aaccctacta ctaattataa tcgaggattt gagaccttac taattaggaa
     3601 agcctggttt cgataattgc ttgcaaccac caacaaaaag atgaacctct ttcagccagt
     3661 acaacgcttg ctttagtggt tcgatcccct ctcagcaatt tttcttcaat agtcgcccta
     3721 tcgatttaag atcttatcgt caatcaaata tataaaaata at
//
LOCUS       DACVWI010000246         3741 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.247, whole genome shotgun sequence.
ACCESSION   DACVWI010000246 DACVWI010000000
VERSION     DACVWI010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3741
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.247"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            120..1736
                     /locus_tag="JBH85_13810"
     CDS             120..1736
                     /locus_tag="JBH85_13810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0947273.1"
                     /translation="MLTKGGFSLICPQGLVLIFKKSSTSKGKHIMLILSKRRGLWSSM
                     PQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLPIATANSIMGVFIAYNFALHLLG
                     GFWGGRLLSNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCML
                     TQQFAPEDSRRETAFLWNYAGMNIGFFIGFSLSGAFQISQNYQRLFLLSSLGNLVALL
                     ICLYFWQQLHDKNTTYSRKDKPAQRKATAFGIGLIFVLPFILRQLLQYADWANKLVIV
                     TGIIMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQIGPMGLTVFIDHNVQ
                     RQYGNWIIPPQWFQNINTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIGVA
                     FAILPIGINYANQHGMVNPGWVVISFILQSIGELLISPIGYAMIGALAPTSLQGVMMG
                     MWMLNTGVGATLSSYSSNLMIIGQESTSPLLTNEGYSHVFLMLGLFAIGSSVILFILV
                     PKLRKLIKEKNLNGFKQSGLEVTERVALCE"
     gene            1729..3729
                     /gene="mnmC"
                     /locus_tag="JBH85_13815"
     CDS             1729..3729
                     /gene="mnmC"
                     /locus_tag="JBH85_13815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HAU0947274.1"
                     /translation="MSSPFVPIITADIDWRDDLPYSLQFDDIYYSAEGGINQSLYVFV
                     EGNNLINRWQQLPTNESNVFTIAETGFGTGMNFLLTWKLWEKFAPQNARLHYISCDKH
                     PLKKNDLIKCLQKWPELSVQAEKLIAHYPVLTPGYHHLTFSNNQITLTLMLGDVLECY
                     EQLLFCGDINLEHQLRESYVNAWYLDGFSPSKNQSMWSDNLFTVIAMLSKESTTVATY
                     SASSIVKTALTNAGFVIEKRKGFGPKRHMICAHYEKAYSSSKKNRHTPWHINYPVTKD
                     ERTALIVGGGLAGCFIANSLAKRGWEVTILEEKEKVGCGGSANQQAVLFPKLSTYKSP
                     FTQFMLYSFLYANDVYKELLKYYDLGELKGSLLLAHNEKEKANQQSLIHWLELYPELG
                     QLVDEKQSSELSGISLPCGGLFIPSSGWINSPELCDILIDNKRISLITGNRVQSINYN
                     QKNWVVNGIEASVLILANGQQVNYFHETNHLPVKAIRGQMTTIQSTQESTKLKIPLCA
                     EGHVLPALNNSHKVGASYDIGTSEPELNALDDQLNLARLKRIAPDIMWSQNVLDHWAG
                     IRAASPDYLPIVGPLPNALEFKEIYSELKSNSKRWIAEAAPCYPNLYVCAAFGSRGLT
                     TIPLATEWLAGLINKEISILPRKLIQAISPARFLRKKIIQGP"
BASE COUNT         1167 a          651 c          726 g         1197 t
ORIGIN      
        1 gaatcttggt gaaaaatcag atttgcgcag aataagtaaa aagtttctaa ttggacctaa
       61 taacacaact gcagtttgat tattaaaata tatttaattc attttagata ctttttcact
      121 tgctgacgaa aggtggtttt tctctgattt gtccacaagg gttagtgtta atattcaaga
      181 agagctcaac tagcaaggga aagcatataa tgttgatttt gagtaaaaga agaggactat
      241 ggagttccat gccccaaggt acatttgcat tattttttat acaagttgtt tccactttaa
      301 gctttagtgt tctttattca actcttgtat tgtacatgaa aggtaaactt ggtttaccca
      361 tagccacagc aaacagcatc atgggggtat ttatagccta caattttgcg ctgcatctct
      421 taggtggttt ttggggtggc agactgctct ctaatcgctc cttattttgt gttgggatga
      481 tcgcgcaaat tgtaggatgt gttttgctct ctataggaaa tacaactttt ttatattatg
      541 gcttggctgc attcttaaca ggttcagggt taaatgtaac atgtgtaaat tgtatgctga
      601 ctcagcaatt tgcacctgaa gactcccgaa gagaaaccgc atttctctgg aattatgcgg
      661 gaatgaatat tggctttttt attggattta gcctcagtgg ggcgttccag atttctcaaa
      721 actatcaaag gctttttctt ttaagcagtt taggtaatct tgttgctttg cttatatgcc
      781 tttatttctg gcaacaatta catgataaaa acactactta ctcaagaaag gacaaacctg
      841 cacaaagaaa agcaacagca tttgggattg ggctaatttt tgtacttcca tttattttaa
      901 gacaattatt gcagtatgct gattgggcca ataaattggt tattgtcact ggaattatta
      961 tgctcatatt aatcttgata ttagcccaac aacaatctac aaaagaagca agagacaaga
     1021 tttatggatt tgcagtatta atgttggttg gtactgtatt ttggatgtta tatcaaattg
     1081 gcccaatggg gttaaccgta ttcattgacc ataatgtgca acgacaatat ggtaattgga
     1141 ttattccgcc acagtggttt caaaatatta atactgtagt catagtattc ggagggccac
     1201 tattgggttt catcttaaat agaatgcgtc aaaatggatc tcagataaat attcctactc
     1261 aatttgcttt cgcattattt tttatagggg ttgcttttgc tatcttacca ataggtatca
     1321 attatgctaa tcagcatggt atggttaatc cgggttgggt agtaataagc tttatattac
     1381 aaagtattgg cgaacttcta atatctccaa ttggctatgc gatgatagga gcgttggccc
     1441 caacctcact ccagggtgtc atgatgggaa tgtggatgct gaatactgga gttggtgcta
     1501 ctctatccag ttatagctca aacttaatga ttattggtca agaaagtact tctcctttat
     1561 taaccaatga gggttacagt catgtctttt tgatgcttgg tttgtttgca ataggatcat
     1621 ccgttatcct tttcatttta gtgcctaaac taagaaaact gatcaaagaa aaaaacttga
     1681 atggctttaa acagtctggc ttagaggtaa ctgaaagagt agctttatgt gagtagtccc
     1741 tttgtcccaa ttataacggc agatattgat tggcgtgatg atctgccgta ttccttacaa
     1801 tttgatgata tttactattc tgctgaaggt ggaattaatc aaagtcttta tgtttttgtc
     1861 gaaggtaata atttgattaa tcgttggcaa caattaccaa ccaatgaatc aaatgtattt
     1921 acaatcgctg aaactggttt cggtacaggt atgaatttct tattaacctg gaaactatgg
     1981 gaaaaatttg cacctcaaaa tgcccgctta cattatattt cctgtgataa acatccatta
     2041 aaaaaaaatg acctaatcaa atgcttacaa aagtggccag aactgagtgt gcaggctgaa
     2101 aaattaatag cgcactatcc tgttttgaca cctggttatc atcatttaac atttagtaac
     2161 aatcagatta ctttaacatt aatgctagga gacgtgctgg agtgctatga gcaattatta
     2221 ttctgtgggg acattaacct tgaacatcaa ttgagagaat cctatgttaa tgcttggtac
     2281 ctggatggat tttcaccatc aaaaaaccaa tccatgtggt ctgacaatct gttcactgtc
     2341 attgccatgc tatctaaaga aagcaccaca gtagccacct attccgcttc cagtatcgtc
     2401 aaaactgctt taaccaatgc aggatttgtt attgaaaaaa gaaagggatt tggacccaaa
     2461 cgacacatga tatgcgctca ttatgaaaaa gcttattcaa gttcaaaaaa aaatcgccat
     2521 accccgtggc acataaacta tcctgtgaca aaggacgaaa gaacagcgct cattgttgga
     2581 ggagggcttg caggttgttt tattgcaaat agcctcgcta agcgtggatg ggaagtgacc
     2641 atattagaag aaaaagagaa agtgggatgt ggtggctcag caaatcaaca ggctgtattg
     2701 ttccctaagt tatccaccta taaatcacca tttactcaat ttatgcttta ttcctttctt
     2761 tatgctaatg acgtttacaa ggaacttttg aaatattatg accttggtga attaaaaggc
     2821 tctttgctgt tagctcataa cgagaaggaa aaagcaaacc agcaaagtct tattcattgg
     2881 ctagaattat accctgaatt agggcaatta gtggatgaaa agcagtcttc tgaattatca
     2941 gggatatctt tgccatgcgg tggtttattt attccatctt ccggctggat taattcccct
     3001 gaactatgcg atattttaat tgataataaa agaatttctc taatcactgg caatagagtt
     3061 caatctatta actataatca aaaaaactgg gtagttaatg gcattgaagc ctcggtacta
     3121 attttggcaa atggacagca agtaaattat tttcacgaaa ccaatcattt gcctgtaaaa
     3181 gccattagag gacaaatgac tacgattcaa tcaacacaag aaagtaccaa attgaagatt
     3241 cctttatgtg ccgaagggca tgttttacca gctttaaaca atagtcataa agtaggggca
     3301 agttatgata ttggcacatc tgagcctgag cttaatgctc tggatgatca attaaacctt
     3361 gcccgattaa aacgtatagc gcctgatata atgtggtccc aaaacgtgtt agaccattgg
     3421 gctggtatac gagctgcatc accagattac ttgcctatag tgggacccct ccccaatgcg
     3481 cttgaattta aagaaattta ttcagaatta aaatctaact ccaaacgatg gatagctgaa
     3541 gcagctcctt gctatccaaa tctatatgtg tgtgcggctt ttgggtcaag aggattaaca
     3601 acaatacctc tcgcaactga atggttagct ggtttaatta ataaggaaat ttcaatactg
     3661 cccagaaaat tgatacaagc tatatcgccc gcccgattct taagaaaaaa aattatacag
     3721 ggaccataag agatatattg a
//
LOCUS       DACVWI010000247         3731 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.248, whole genome shotgun sequence.
ACCESSION   DACVWI010000247 DACVWI010000000
VERSION     DACVWI010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3731
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.248"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            267..2072
                     /locus_tag="JBH85_13820"
     CDS             267..2072
                     /locus_tag="JBH85_13820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947275.1"
                     /translation="MGIFLETKRLILKRVELSDLDLLVALRSDLEVMENTGYGGTQTI
                     EEVREYLDFAIPYQEKHGMGFCLVFEKESGNFVGEAGLFHLLFDDKQSEIELGYHLHK
                     KFWGKGYGTELAKALIQWGFQHLSVNKLISTAYPDNIASQKVLNKAGFDCMSKKQLPD
                     GEELFWYEIYKNDSVELVPYDSQWPKIAEVEIKKLRKILPTNHVIDIQHVGSTAIPGM
                     LAKPIIDIQITVDSLTAIKQTAIAVLKAYDYVYWAEDPDPEKMFFVKGMPPFGEKRTY
                     HVHIIEPKSKRGHDRIIFRDYLIAHPEVAREYEQLKIELAHEYTYDREQYTDAKTQFI
                     ASVLGKALVTDQIQNLTKYKGINELLHQLLLQIQSILANEFVGMYIGGSLASDSFNSE
                     TSDIDCYIITSKMLSENMIGKIEEMHNQFYSSKLKYAKKIEASYVPQKDLVDFDPQGM
                     RPYFNEGRYYLGHYGNNYLIELFVLREKGISIAGPDIKCLIQEISNQSLKAAIQKNLH
                     EYWESNLIDFSKFKRSDYQVFTILTMCRTLYSLETGKITSKIEAAQWAMQHLDTKWEK
                     LIELAAAWEPSQEINRLEETQNFVRYVLNKSREYQ"
     gene            2179..2790
                     /locus_tag="JBH85_13825"
     CDS             2179..2790
                     /locus_tag="JBH85_13825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAU0947276.1"
                     /translation="MSMSKLNKTRVYEVYDEIINWFDDARTKNLMESEYLNLIVNAIP
                     PKSSILDLGCGTGEPIAQFFIEKGFKLTGVDGSQKMIELCRKRFPDERWIVSDMRDIN
                     LQQQFDVILAWHSFFHLDHDSQRNMFKIFESHTKPGGVLAFTSGEEEGEVWSDNGGQQ
                     LYHASLSTKEYESLLKNSSFKVLVHKVCDPECGEATVWVAQKI"
     gene            2830..2916
                     /locus_tag="JBH85_13830"
                     /pseudo
     CDS             2830..2916
                     /locus_tag="JBH85_13830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014841327.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            2947..3189
                     /locus_tag="JBH85_13835"
     CDS             2947..3189
                     /locus_tag="JBH85_13835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947277.1"
                     /translation="MLIIVVLGNFRESKKQDLTLILCSYVEKSEDSNATLPEPKETKG
                     HGRLPHTAYANANANEYNIPIETLSPGQPCRMDCGG"
     gene            3165..3686
                     /locus_tag="JBH85_13840"
     CDS             3165..3686
                     /locus_tag="JBH85_13840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947278.1"
                     /translation="MPNGLWRVVLSHHPRYYREHERSGSGLVFCQLLVRSQKAGSAPD
                     MLSTVLTKILLKKRKEYYQQLGLASKTLDLTSWLLWFANIALEDYMYIDFIIKKSVIL
                     REAEGKINPRQEKVLLRLFHAGPEGVVGGLSAKNYMSITNATIATTTRDLNDLVKKIF
                     SKELVSLKRLVIF"
BASE COUNT         1266 a          607 c          737 g         1121 t
ORIGIN      
        1 tatgagaaag tttgctttta tcacaaagtg actttggttt atcaaaccat ttaataagtg
       61 tatcttcccc tagattatca tatatatagg ataaacaggt cgttcaggat ccgaccctga
      121 tcctgtttcc agaagttatc cctgatttaa aattaaatat aatattttcg tgctaccccg
      181 gcgctacctt ttgtagcaac tgctatcgta gaagcatcaa ataaaaagta taattccttc
      241 cagtttaaaa tatagataga cacccaatgg gcatttttct agaaactaaa agactaatac
      301 ttaaaagagt cgaattatcc gatcttgatc tgttagtagc attgagatct gatttagaag
      361 taatggaaaa tactggttat gggggtactc agacaataga agaggtaaga gagtacttag
      421 attttgctat tccttatcaa gaaaagcatg gaatgggatt ttgtctggta tttgaaaagg
      481 aaagcggaaa ctttgttggc gaagcgggtt tattccattt gttatttgat gataagcaat
      541 ccgaaattga acttggttac cacttgcata aaaagttttg ggggaaaggc tatggcactg
      601 aattagcaaa ggcactaatt cagtgggggt ttcagcactt atctgtcaac aagctcattt
      661 ctaccgccta tccagataat atcgcttctc aaaaagtctt aaacaaggcg ggctttgatt
      721 gcatgagtaa aaaacaattg cctgatggcg aggaattgtt ttggtatgaa atttacaaga
      781 atgattccgt tgaattagtg ccttatgatt ctcaatggcc aaagatagct gaagtggaaa
      841 ttaaaaagct acgaaaaatc ctgccaacta atcatgttat tgatatccaa catgttggta
      901 gcacagctat tccaggaatg ctggctaagc ctattattga tattcaaatt actgttgatt
      961 ctctaaccgc tataaaacag acagcgatag ccgtattaaa agcctatgac tacgtatatt
     1021 gggccgaaga tcctgatcct gaaaaaatgt tttttgtaaa agggatgcct ccatttggtg
     1081 aaaaacgaac ataccatgtg catattattg agcctaaatc aaagcgtggg cacgatagaa
     1141 tcatttttag ggattatttg attgctcatc ctgaggtagc gcgtgagtat gaacaattaa
     1201 aaatagaatt ggcacatgaa tatacttatg atcgggagca gtataccgat gctaaaacac
     1261 aattcattgc cagtgtatta ggcaaagctc tagtaactga tcaaattcag aacctgacaa
     1321 aatataaagg aataaatgaa ctactacacc agctcctctt acaaatacaa tctattctag
     1381 caaacgaatt tgtaggtatg tacattggag gttctctcgc aagtgattca ttcaatagtg
     1441 aaacaagtga tattgattgc tacattatta caagcaagat gctttctgag aatatgatcg
     1501 gaaagattga ggaaatgcac aatcaatttt attcaagtaa attaaaatat gcgaaaaaaa
     1561 ttgaagcttc ctacgttcct caaaaagatc tcgtagattt tgatccccaa ggcatgcgtc
     1621 cttattttaa tgaaggtcgc tattacctgg ggcattatgg caataattat ttaatcgaac
     1681 tatttgtact aagagaaaaa ggaatttcaa ttgcagggcc cgatataaaa tgtttaatcc
     1741 aagaaatatc caatcaaagt ttgaaggctg ctatacagaa aaatttgcac gaatattggg
     1801 agtctaactt aattgatttt tcaaaattta aacgcagtga ctatcaggtg tttacaattt
     1861 taaccatgtg ccgcaccctt tattctttag aaacaggcaa aataacttct aaaatagaag
     1921 cagcacaatg ggcaatgcag catcttgata ctaaatggga aaagttgatt gaattagctg
     1981 ccgcttggga gccaagccag gaaataaata gattagagga aacgcagaat tttgtcaggt
     2041 atgtgctgaa taaaagtcgt gagtatcaat gagcagatca cattactttt cagaataaat
     2101 gaagactgaa aatttattgt agtagtctga taaaatctca ctcatcaata aatccagcta
     2161 ttgttatttt aggagcaatt gagcatgagt aagttaaata aaactagagt ctatgaagta
     2221 tatgatgaaa tcattaattg gtttgatgat gctcgcacta aaaacctcat ggaatcggaa
     2281 tatcttaatt taattgtgaa tgcaattcct ccgaagagct caattttgga cttgggctgt
     2341 ggaactggag agcctatagc gcaatttttt attgaaaaag gctttaaact tactggtgtt
     2401 gatggcagtc aaaaaatgat tgagctttgt agaaagcgtt ttccagatga acgctggata
     2461 gtctcagata tgcgcgatat aaatttacaa caacaattcg atgtaatact tgcatggcat
     2521 agcttttttc atctggatca tgacagccaa cgtaatatgt tcaaaatatt tgaatcccat
     2581 accaaacctg ggggagtact agcatttact tctggagaag aagaaggcga agtctggagt
     2641 gataatggag gccaacaact ttatcatgca tctttgtcga caaaagaata tgaaagcctt
     2701 ctcaaaaatt catcatttaa agtgctggta cataaagtct gtgatcctga gtgtggcgag
     2761 gctacagttt gggtagcgca aaagatttaa aatccttagt tataaaccaa aattatcagt
     2821 ggaattacca tgaaccctaa ttttaaaata agatttgcaa tactgtccga tgttccttta
     2881 attttgcaat ttattaaaga gtttgcagaa tacaagtatc agcgctaaag ggtcagatct
     2941 tgccttttgc ttatcatagt agttttaggg aattttagag aaagcaaaaa gcaagatctg
     3001 accctgatcc tctgttcata tgtagaaaaa tcagaggatt ctaatgcaac acttcctgag
     3061 cccaaagaaa ccaaaggtca tggacgttta ccccatactg cttatgccaa tgcgaatgcg
     3121 aatgagtaca atatccccat agagacacta agccctggtc agccttgccg aatggattgt
     3181 ggagggtagt tctatcgcat caccccaggt attatcgtga acatgagcgt tcaggatcag
     3241 gtcttgtttt ttgccaactt ctagtcagaa gtcaaaaagc agggtctgct ccagatatgc
     3301 tctcaacagt attgacaaaa atattattaa aaaagagaaa ggaatattat cagcaattag
     3361 gcttagcaag taaaacctta gacctgacat cctggctttt atggtttgct aacattgctc
     3421 tggaggatta tatgtatatt gattttatta ttaaaaaatc tgtcatttta agggaagccg
     3481 aagggaaaat taatccaagg caagaaaagg tgttattaag attatttcat gctgggcctg
     3541 agggggttgt gggtggttta agtgctaaaa attatatgag cattactaat gcaacgattg
     3601 ctacaacaac cagagattta aatgatttgg ttaaaaaaat attctcaaaa gaactggtga
     3661 gcttaaagcg actcgttatt ttttaaatct cgataagttt taaataggat ttattgaact
     3721 tggtacgtag t
//
LOCUS       DACVWI010000248         3600 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.249, whole genome shotgun sequence.
ACCESSION   DACVWI010000248 DACVWI010000000
VERSION     DACVWI010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3600
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.249"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            33..953
                     /locus_tag="JBH85_13845"
     CDS             33..953
                     /locus_tag="JBH85_13845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0947279.1"
                     /translation="MLPDLNDLYFFYLVVEQRSFTKAGRSIGITKSKISRRISELESR
                     LGVRLLHRSTRKLALTDIGQIFYQHCKAMVDEAQSAQEAIELVQSKPRGRIRVTCPAL
                     FAQSTFTDIITRFMQQYQEVTIVLNATDRPVDLIQEGFDVAIRFQANTFEDSTLVVRK
                     LGLSFSSLIASPTYLNHHGTPQTPQDLVNHACFAKTRNEGMSQFLLTHNDGRQISVHF
                     QPILESNEWLVLKQAALSHLGITMMPQEICRKEIDSGLLVPILTEWSLPKASLYIIYP
                     SRRGLIPAIRSFIDFVAEELINNCTNIRLK"
     gene            complement(972..1058)
                     /locus_tag="JBH85_13850"
     tRNA            complement(972..1058)
                     /locus_tag="JBH85_13850"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1022..1024),aa:Leu,seq:taa)
     gene            complement(1076..1149)
                     /locus_tag="JBH85_13855"
     tRNA            complement(1076..1149)
                     /locus_tag="JBH85_13855"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1115..1117),aa:Cys,seq:gca)
     gene            complement(1210..1285)
                     /locus_tag="JBH85_13860"
     tRNA            complement(1210..1285)
                     /locus_tag="JBH85_13860"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1250..1252),aa:Gly,seq:gcc)
     gene            complement(1338..1901)
                     /gene="pgsA"
                     /locus_tag="JBH85_13865"
     CDS             complement(1338..1901)
                     /gene="pgsA"
                     /locus_tag="JBH85_13865"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HAU0947280.1"
                     /translation="MSTLTSLPNILTLMRISIIPVFIMVFYFPFKWAHPTAAVLFAIA
                     SITDWLDGYLARKLEMMSHFGAFLDPVADKLLVSTSLLLLVGAKDIDYITIPAIVIVG
                     REIVISALREWMAEVGRRASVAVGYIGKVKTSLQMIALVLLLAFNPLVSWWGSLGFVL
                     LYVSAILTIWSMVIYLAIAWPELMKKS"
     gene            complement(1921..2580)
                     /locus_tag="JBH85_13870"
     CDS             complement(1921..2580)
                     /locus_tag="JBH85_13870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HAU0947281.1"
                     /translation="MSSAYQLVIFDWEGTIADTLGVILHTVATEAKMLGFGDIDPYQA
                     RKYVDLGLVQAVKKTLPNLTAGQQEDLLQAVQSAMISRPTEVRLIPGVLEFIQQLHQA
                     KVDLAIATNKGHNSLIRALQATELDQLFKVTRSAGQVPAKPCPQMLEEIMEEFGRDPS
                     STLMIGDSTTDMEMAKRINVNAIGMDFYHQQEDALKAAGALAVFDDYKLLSAYLMLPE
                     A"
     gene            complement(2573..3526)
                     /locus_tag="JBH85_13875"
     CDS             complement(2573..3526)
                     /locus_tag="JBH85_13875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HAU0947282.1"
                     /translation="MTMSEVSYKEIGSEENGQRLDNYLIRILKGVPKSHIYRIIRGGE
                     VRINKKRAQASSRLQIGDSIRIPPIRMTDSKEIFVSDNLAKRLKDSIIFEDSSLLVIN
                     KPAGIAVHGGSGLSLGVIEALRKTRHDLSYLELVHRLDRETSGCLLLAKKRSTLRAIQ
                     ALLEAREVQKIYWALLTHRWDGKKKITITAPLEKNTLKSGERVVSVQKDGKASETDFK
                     LLENYHQACWVEASPKTGRTHQIRVHSAYFGHVIVGDEKYGAKVGEVEGIDYQQNRLY
                     LHARSIQFNLNGVMHVFQADVDDGFGNTLKQLRARSLLSYE"
BASE COUNT         1080 a          814 c          645 g         1061 t
ORIGIN      
        1 agcagataac taaacttaca caagtgtaaa aaatgttacc tgatctcaat gatttgtatt
       61 ttttctatct ggttgtggag caaagaagct ttactaaagc agggcggagt ataggtatta
      121 caaaatcaaa aatcagtcga cggattagtg aattagagtc tcgtttaggg gtgaggttat
      181 tgcatcgctc cacaagaaaa ctcgcgttga ctgatattgg acaaattttt tatcaacatt
      241 gcaaagctat ggttgacgag gctcaatctg cgcaagaagc aattgagtta gtgcagagca
      301 aaccacgagg gcgtattcgt gtcacctgtc ctgcattgtt tgcacaatcg acttttaccg
      361 atattattac ccgatttatg caacaatatc aggaagtgac tattgtttta aatgccacag
      421 atcgccctgt ggatctgatc caggaaggat ttgatgtcgc aattcgtttt caagctaata
      481 cctttgaaga ttcaacttta gtcgtacgca aactggggct tagttttagc tcgttgattg
      541 ctagtcccac ttatctaaat catcatggaa cccctcaaac accacaagat ttggtcaatc
      601 atgcttgttt tgctaaaaca cgcaatgaag gaatgagcca atttttatta actcataacg
      661 atggtcgtca aatttctgtg cattttcagc caattttaga aagtaacgaa tggctggttc
      721 taaaacaagc ggcattatca catcttggaa taacaatgat gcctcaagaa atttgtcgca
      781 aagaaattga ttctgggtta ttagttccga tattgacaga atggtctttg ccaaaggcaa
      841 gcctttatat aatctatccc tctcgtcggg gtttgatacc agccatacga tcttttattg
      901 attttgtagc cgaagaatta attaataatt gtaccaacat taggcttaag taatttaaac
      961 acatcaaatt ttggtgccca gggccggaat cgaaccggca tggtgttacc accgagggat
     1021 tttaagtccc ttgcgtctac ctgtttcgcc acctgggcat tcactgtttt tttaatggag
     1081 gctgaggccg gaatcgaacc ggcgtacacg gctttgcagg ccgctgcatg accactctgc
     1141 cacacagcct caaatctata tacttcgcta ttgctctaaa aaaaaagcga cttcgatgtc
     1201 gcttaaattt ggagcgggaa acgagactcg aactcgcgac cctaaccttg gcaaggttat
     1261 gctctaccaa ctgagctatt cccgcgtctc tacgggatga gattctaccg aaaataaata
     1321 ccctgtcaac agcaaaatta actttttttc attaactctg gccaagcaat agccaaataa
     1381 atcaccatgg accaaatcgt caaaatagca gacacataaa gaagaacaaa ccctaagctc
     1441 ccccaccaag aaacaagggg attaaatgcc agcaataata ccaaagcgat catttgcaaa
     1501 gaagttttaa ctttccctat atacccaacg gcaacactag cacgacgtcc aacttcagcc
     1561 atccactcgc gcaaagctga aatcacgatt tctcgtccaa cgattacgat tgcaggtata
     1621 gtgatataat ctatatcttt cgctccaact aacaataaca agcttgtcga taccaataat
     1681 ttatcggcga cgggatcaag aaaagctcca aaatgagaca tcatttcaag tttgcgcgcc
     1741 aaataaccgt ctaaccaatc agtaatgctt gcaatagcaa aaagaaccgc agcggtagga
     1801 tgagcccatt tgaaaggaaa ataaaatacc ataataaata ctggaatgat cgaaatccgc
     1861 attaaggtta atatattagg caaactggtt aacgtactca ctgctgaaca tccccctttt
     1921 ttatgcttcc ggcaacatca gataagctga caatagctta taatcatcaa atacagccaa
     1981 agcacctgct gccttaagcg catcctcttg ctgatggtaa aaatccatgc ctatagcatt
     2041 aacattgatt ctttttgcca tttccatatc cgttgtagaa tcacctatca tcaaagttga
     2101 tgaaggatct ctcccgaatt cctccatgat ttcctcaagc atttgcggac aaggttttgc
     2161 cggtacttgt ccagcagagc gtgtcacttt aaacaattga tcaagctcag ttgcctgcag
     2221 agcacggatt agagaattgt ggcctttatt tgtcgcgatg gccaaatcga cctttgcttg
     2281 atgaagttgt tggataaatt ctaatactcc aggtattaaa cgcacttctg ttggccgtga
     2341 aatcattgcg gattgcaccg cctgtaacag atcttcctgc tgcccggcag ttagattggg
     2401 caatgttttt tttactgcct gaaccaatcc taagtctaca tattttcttg cttgatatgg
     2461 gtcaatatca ccaaagccca acattttagc ttcagtagca acagtatgta aaataactcc
     2521 caatgtatca gcaatcgtgc cttcccaatc aaaaattact aattgatatg cactactcat
     2581 agctcaatag gctccttgca cgcagttgct ttaaagtatt tccaaatcca tcgtctacat
     2641 cagcttgaaa tacatgcatt accccattca gattgaattg aatagacctt gcatgcagat
     2701 aaagacgatt ctgttgataa tctatacctt ccacctcacc caccttagcg ccgtatttct
     2761 catcaccaac aatgacatga ccaaagtaag cgctatgaac acgaatttga tgtgtccgtc
     2821 ctgttttagg agaagcctcc acccaacagg cctgatgata attttccagc aatttaaaat
     2881 ctgtttctga tgccttacca tctttttgaa cggaaacaac cctttctccg gatttcaatg
     2941 tgttcttctc gagaggagct gtaattgtaa ttttcttttt accgtcccaa cgatgcgtta
     3001 ataaagccca ataaattttc tgcacttcgc gggcttccag taatgcttga atggctcgta
     3061 acgtgcttct ttttttggct aataaaagac aaccggaagt ctctctatcc aatcgatgta
     3121 ccaattccaa ataggataaa tcgtgccttg tctttcttaa tgcttcaata acccccaggc
     3181 ttaaaccact gccaccatgt actgcaatac ctgctggttt attaattacc aacaaggaag
     3241 aatcttcaaa aatgatacta tccttcaagc gttttgccaa attatcgctt acaaaaattt
     3301 ctttagaatc agtcattcga attggcggta ttcttatact gtccccaatt tgtaaacgac
     3361 tgctagcttg agctcttttt ttattaatcc gaacttcgcc gccacgaata atcctgtaga
     3421 tatggctttt aggaactcct tttaaaatgc gaatcagata attatccaaa cgctggccat
     3481 tctcttcgga gccaatttct ttataactta cttcactcat tgtcaataaa cctgttttct
     3541 gagcgtgatt tttttgatat gattagatat cgtacgggaa aatccctgta cgaccgaatt
//
LOCUS       DACVWI010000249         3591 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.250, whole genome shotgun sequence.
ACCESSION   DACVWI010000249 DACVWI010000000
VERSION     DACVWI010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.250"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            2..208
                     /locus_tag="JBH85_13880"
     CDS             2..208
                     /locus_tag="JBH85_13880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019232219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HAU0947283.1"
                     /translation="MNSELLLNEIRQIVINHFPTFENEHLTHKTSEQNKYLAITVTVY
                     AENQISLDGLYQDLSQHPAVKMVL"
     gene            208..807
                     /gene="lipB"
                     /locus_tag="JBH85_13885"
     CDS             208..807
                     /gene="lipB"
                     /locus_tag="JBH85_13885"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HAU0947284.1"
                     /translation="MIIHNLGIKDYTEIWEQMKEFTAIRDSNSYDELWLLEHYPVYTQ
                     GQAGKPEHVLNPNSIKIVQSDRGGQVTYHGPGQLVAYVLMDIRRRNLGIRTLVAKLEE
                     ILISVLEHYRIPANIRSGAPGVYVGEKKIASIGLRVKNGCTYHGIALNVNMDLSPFLG
                     INPCGFAKMEMTQMSHFHPNIQLEEVSQHLVQYFLTQFK"
     gene            817..2853
                     /locus_tag="JBH85_13890"
     CDS             817..2853
                     /locus_tag="JBH85_13890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947285.1"
                     /translation="MNLLADYVQPLTYWLQANPHWSLFITFLIALSESLAVIGSIIPG
                     SVTMTAIGILAGSGIMRIDLTLLAATLGAICGDSLSYFLGYFYSDRLIEIWPFRKYPG
                     LLKYGKDFFASHGGKSVLIGRFVGPLRSIIPVIAGIMHMKQWRFLIANIVSAIGWSIL
                     YVMPGVLIGAAGHELSAEGATRFFILILVILAVIWLSSLVLKWLFIRLNSFLRSNLHR
                     FWLEIKTSPRLSKVYYAITPVQEENHYNTVGLLLIALVIFFLFLTLVIFTIEGQLLDY
                     INVPVHFFMQSFHSSLLEAVFIVCAQLTSKSTLTGLFVASCTWFIYHKNYRATVYLSS
                     ITLLSGVIALFLTKIIDSPRPQGLLVTLPGSSFPSVSISIATALYGFVLFYINSKYSL
                     ITSSFKTIILIVLGLSGFANIYLGDFWFSDILAAYLLGAEVCLIHCLVYRRFSTSVIK
                     NEHPLIMLISLLMVIVFATAVSTVVNFKEQVHDHMPYHKEFTLTEKQWWDQQRPLLPL
                     YRLSRIGKRISLLNIQYVGDLDALQNKLEQFGWEPQSDKTFFTRLLMRMNNAPSNVKL
                     PLLTQLYENKKPGLIMTYQDKKSKLIFDLTIWQSNYYLSEPKRIVWIGSIHQNIFNLK
                     QKKSRHNLPPVLNPLSYVIPALDDFTLRRIMLSDDLVKTSVFPTAPYILLIKTK"
     gene            2970..3584
                     /locus_tag="JBH85_13895"
     CDS             2970..3584
                     /locus_tag="JBH85_13895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system protein LssZ"
                     /protein_id="HAU0947286.1"
                     /translation="MESMHILAKVIHCLFPLIALTLLIIGIKRNAIYYIISSLWISLI
                     SLVIHYQTSGGEILGTYFNYLNATIYTINLFVLCLSLVYVLWHLSNDNVAFKIVSSLF
                     QSFIVIGALLVVINLWINAYFIENRLNGTPVMQVALLEKPDYCNYRYIFYKVALDGTV
                     YYLCPNHYGLIPSIGRLSISPDFIASQLSIPSKKQMLLLQQKRS"
BASE COUNT         1080 a          575 c          672 g         1264 t
ORIGIN      
        1 aattaactca gaattattgc tcaatgaaat caggcaaatt gttattaatc acttccctac
       61 ttttgaaaat gagcatttaa ctcataaaac gagtgaacaa aacaagtact tggctattac
      121 tgtgacggtg tatgcagaaa atcaaatctc gctggatgga ttatatcagg atttaagtca
      181 acatcctgct gtgaaaatgg ttttataatg ataattcata atttaggcat aaaagattat
      241 actgaaatat gggagcagat gaaggagttc actgcaatcc gcgacagtaa ttcttatgat
      301 gagctttggt tattagagca ttatcctgta tatactcagg ggcaggcagg gaaaccagag
      361 catgtactta atcccaactc tataaaaatt gtgcaatcag atcgcggtgg acaagttaca
      421 tatcatggcc caggacaact agtagcctat gttttaatgg atattcgccg cagaaacctg
      481 ggcataagaa ctttagtagc aaaactggaa gaaatattaa tttcggtttt agaacattat
      541 agaattccag caaacattcg cagtggggca cctggagttt acgtaggtga aaaaaaaatc
      601 gcatcgatag gactgagggt gaaaaatggg tgtacttatc atggtatagc attaaatgtg
      661 aacatggatt tgagcccatt tttaggcatt aacccatgtg gttttgctaa aatggaaatg
      721 acacagatga gtcatttcca tcctaatatt cagttagagg aagtaagcca acatcttgta
      781 cagtattttt tgactcaatt taaataatag gaaattatga atttgttagc agattatgtg
      841 caaccactga cttattggct acaagcaaac ccacattggt ccctgtttat tactttctta
      901 atcgctttaa gcgaatcttt agctgtcatt gggagtatta tacctggctc tgttaccatg
      961 actgcaatag ggatattagc aggttctgga atcatgcgta tcgatttgac attgcttgct
     1021 gctactctgg gagctatttg tggagatagc cttagttatt ttttgggata tttctatagt
     1081 gatcgtttaa ttgagatttg gccttttaga aaatacccgg gcttattgaa gtatggtaaa
     1141 gatttttttg caagccatgg cggtaaaagc gtattaattg gtcgctttgt tggcccattg
     1201 cgttctatca ttccagtgat tgctggaata atgcatatga aacagtggag gttcctgatc
     1261 gcaaatatag tttctgctat cggatggtct attttatatg ttatgccagg ggtgctgatt
     1321 ggcgcggcag gacatgaatt atcagcagag ggagctacaa ggttttttat cttgatattg
     1381 gtcattcttg ctgttatttg gttgagtagc ctcgttctca aatggttatt tattaggtta
     1441 aattcatttt tgagaagtaa cttgcatcgt ttttggttag aaattaagac aagccccaga
     1501 ttatctaaag tgtattatgc tatcacccct gttcaggaag aaaatcatta caatacggtt
     1561 ggtttattac ttattgctct cgtgattttt tttctctttt taactttagt tatttttacc
     1621 attgaaggtc aactgctaga ctatattaat gtgcctgtgc atttttttat gcaaagcttt
     1681 cacagttcct tactggaagc agttttcatt gtatgtgctc aattaacaag caaatcaacc
     1741 ttaactgggt tatttgtcgc ttcttgtaca tggtttattt atcataaaaa ttaccgagct
     1801 acggtttatt taagcagcat aaccctattg agcggtgtta ttgctttatt tttaactaaa
     1861 attattgata gccccagacc gcaagggcta ttggttactt tgcctggttc ctcttttcca
     1921 tctgttagta tttccattgc aactgcattg tatggttttg ttttatttta cataaatagc
     1981 aagtattcct taataaccag cagttttaaa acaattattc taattgtgct cggattaagt
     2041 gggtttgcta atatctattt aggtgacttt tggttttctg atattttagc tgcttatttg
     2101 ttgggagctg aagtatgttt aattcattgt ttggtatata gaaggtttag tacttctgtt
     2161 ataaagaatg aacatccttt aattatgctc atatcactgc ttatggttat tgtatttgcg
     2221 acagctgttt caacagttgt gaattttaaa gagcaggttc atgatcatat gccctatcac
     2281 aaggagttta ctttaacaga aaaacaatgg tgggatcagc aaagacctct tttacctttg
     2341 tataggttaa gcagaattgg aaaacgaata agtctcttaa acattcaata cgtaggtgat
     2401 ctggatgcac tgcaaaataa gttagaacaa tttggttggg aaccacagag cgataaaact
     2461 ttttttacca gattgctgat gcgaatgaat aatgcaccat caaacgttaa actgccttta
     2521 ctcactcaac tatatgaaaa taaaaagcca ggcttgataa tgacgtatca agataaaaaa
     2581 tcaaagttga tttttgattt aactatttgg caatcgaact attatttatc tgagcccaaa
     2641 agaattgtgt ggataggctc cattcatcaa aatattttta atttaaagca aaaaaaatcc
     2701 aggcataatt taccgccagt attaaatcca ttgtcttatg taatccctgc tcttgatgac
     2761 tttaccctta gaaggattat gctatctgat gatttggtaa aaacatcggt tttccctact
     2821 gccccctata ttcttttgat aaaaactaaa tagcagagcg tcattgattg caggaagcat
     2881 gttctgattt atttatatta ggcccggcta gtaacccatg taaattactg atataactat
     2941 gtatgttctt ataatttata aaataaggga tggaatcaat gcatatcttg gctaaagtta
     3001 ttcactgtct ctttccatta attgcgctaa ctcttttaat tattggaatc aaacgaaacg
     3061 cgatttatta tattatttct tccttatgga taagccttat ttcattagtc attcattatc
     3121 agacttccgg tggagagatt ttaggtacgt attttaatta tcttaacgca acaatatata
     3181 ctatcaattt gttcgttttg tgtttatctt tagtttatgt tttatggcat ttaagcaatg
     3241 ataatgtagc gtttaaaata gttagcagct tgtttcaatc atttatagtc attggagctt
     3301 tattggttgt aatcaatctt tggataaatg cctattttat cgaaaacagg ttgaatggaa
     3361 cccctgtgat gcaggtagcc cttttagaga aacctgatta ttgtaattac agatatatat
     3421 tttataaggt ggcactggat ggcaccgttt attatctttg ccctaatcat tacggtttaa
     3481 tcccatctat tggtcgattg tctataagcc cagattttat agcatcacag ttatcaatac
     3541 caagcaaaaa gcaaatgctc ttattgcaac aaaaaaggag ttaaattagc g
//
LOCUS       DACVWI010000250         3578 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.251, whole genome shotgun sequence.
ACCESSION   DACVWI010000250 DACVWI010000000
VERSION     DACVWI010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.251"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            15..1604
                     /locus_tag="JBH85_13900"
     CDS             15..1604
                     /locus_tag="JBH85_13900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HAU0947287.1"
                     /translation="MPRTMFFSVDAANLQNLQITNQKAFAALESYLNDNDSPGAWNNN
                     QGYKYTHKDVTYCFSFNQSLVRRPRKSDQKKHTFEIFDPNMNPLGKGAYGIVYPILGT
                     IQFEFGNAIKRPPKNKLVKIQNHSERDQSYSVLREYQGLLQSGHIAVKPPIFVENKES
                     KFSYLIMEKAEGIVLEKFLNPVKRLDLSEDVPELNLINRIEITFAILKAIKEQVTDKH
                     LIHRDIKPGNIIIDFSKSPPIAKVIDFGFVLRASEQDYRRCGTRAYRAPESFNTQALY
                     TAKADVWSTGRILSYLWGDKYTNYYISRDKGLDYVIEKSRNELLFSDPELELYLTKED
                     KSKIRSCLSTMLIVDPGERGSIDKAIKQFSQIDFEKYKRLKRSTNFEIDLTDNDIKLR
                     KQLNSIHLHLIALQSKEKDLRDRACFDAANAMSQLVAKLTTYTNYLEKNPDPFLIKRY
                     KDCCIVEMDLANLTLQNHRDALWLVAELSTAILLLGVGYLFAFGINYYYTGRMGLFSQ
                     TRSEKLVEEMKSSVLGIAVGN"
     gene            complement(1658..2467)
                     /locus_tag="JBH85_13905"
     CDS             complement(1658..2467)
                     /locus_tag="JBH85_13905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1484 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947288.1"
                     /translation="MPSMEMNCCIGKSLNYMRFSMSSFKHSCEKIDINLAHNVLTICP
                     KNREALQRITALFNNLYILYFIGGIPSITYDDMDQIQINIKYSQQITDAKLKNTLLSF
                     VNSELISQDEKETFLNELELTKTSFTTQFNTELENIRKKAEELSKKAEVDPYHYESAS
                     KAANRLHQELLIASQLYFYHKTPEAYENFKQTCQREIERARPVLEQHRGWKPLLVNVG
                     AAIIGLGVLYLLAASINYYKTEGRHFFFHFETDSLQKLENLNVAQSQVLRI"
     gene            complement(2666..3067)
                     /locus_tag="JBH85_13910"
     CDS             complement(2666..3067)
                     /locus_tag="JBH85_13910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947289.1"
                     /translation="MQESIHSLFLAQAIGLYLLIVGIIMLSRASYYRELLTHLKEGSA
                     TIVTAGSLGLIIGICLVLVHNIWVPESEVLVTLVAWLILIKSILWLGFPEFMVKCSQK
                     AYTGTGYYVISIVVLIIGILLITHGFYLFSH"
     gene            complement(3153..3560)
                     /locus_tag="JBH85_13915"
     CDS             complement(3153..3560)
                     /locus_tag="JBH85_13915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019217316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HAU0947290.1"
                     /translation="MTNQALADIVGISAPPCFRRVKRLREEKIIVNDVALVDPFKVGR
                     PLIVFVNITLEKQREDLLTHFERKMHEEPEVMQCYFVSGDTDYLLIIHVKDMNHYNEF
                     ARRVFANEPNIRKFRSSFCLNRTKYNTQVVLDE"
BASE COUNT         1175 a          617 c          659 g         1127 t
ORIGIN      
        1 ttgaagtcaa tatcatgcct cgtacaatgt ttttttccgt tgatgcagct aatctccaaa
       61 atttacaaat tacaaatcaa aaagcttttg cagcgttgga gagttatctg aatgataatg
      121 attcaccagg tgcctggaat aataatcaag gatacaaata tactcataag gatgttactt
      181 attgcttctc atttaatcaa tccttagtga gacggccaag aaaatcggat caaaaaaaac
      241 atacatttga aatttttgac cctaatatga accctttagg caagggagcg tacggtattg
      301 tgtatcccat cttaggtaca attcagtttg aatttggaaa tgccattaaa agaccaccaa
      361 agaataaatt agttaaaata caaaaccata gtgaacgcga tcaaagttat tctgtactac
      421 gtgaatatca agggcttctt caatcagggc atatagcggt taaaccgcca atatttgtag
      481 aaaacaaaga gagcaaattc agttacttga ttatggaaaa agcagagggt atcgttttag
      541 agaagtttct aaatcccgtt aagcggcttg atttgtctga agatgtacct gagcttaatc
      601 ttattaatcg gattgagatt acttttgcca ttttaaaagc aattaaagag caggtgacgg
      661 ataagcattt gattcatcga gatataaaac caggaaatat tataatcgat tttagcaagt
      721 cgcctccgat agctaaagta atcgattttg gttttgtgct tagggcgtca gaacaggatt
      781 atcgtcgttg tggaacccga gcatacagag cgcccgaatc gttcaatacc caggcattgt
      841 acacagcaaa agctgatgtt tggtcaacag gcaggatatt aagttatttg tggggtgata
      901 aatatactaa ttattatatc tctcgtgata agggtttgga ctacgtgatt gagaagtcaa
      961 gaaacgaact actcttctct gacccagaat tggaactcta tttaaccaag gaagataaaa
     1021 gtaaaatcag atcgtgccta agcacaatgc ttatagttga cccaggggaa agaggatcaa
     1081 ttgataaggc tatcaagcag ttttcccaaa ttgattttga aaaatataaa agattaaagc
     1141 gctctacaaa ttttgaaatt gatttaacag ataatgatat taaattaaga aaacagctca
     1201 attcaattca cctgcatttg attgccctac agagcaaaga aaaagatttg cgtgatagag
     1261 catgttttga tgcagcgaat gcaatgagcc aattggtagc caagctcact acctacacca
     1321 attatcttga aaaaaatcca gatccatttt taataaaacg ttataaagac tgctgcatcg
     1381 tagaaatgga tttggctaat ttgacattgc aaaatcaccg agatgcctta tggttagtgg
     1441 ctgagttatc aactgctatc cttttgcttg gggtagggta tttatttgct tttggtataa
     1501 attattacta cacaggtcgt atgggattat tttctcaaac caggtctgag aaattggtgg
     1561 aggaaatgaa aagctcggta ttgggtattg cggttggaaa ttaaaaatct gtatttcccg
     1621 gattataaca gaatcgtcta atccgggttg atcatgttta gattcttaac acttgagatt
     1681 gagccacatt caggttttct aatttttgca aggagtccgt ttcaaaatga aagaaaaagt
     1741 gacggccttc tgttttataa tagttaatgg aagctgcaag caaatagaga actccaagac
     1801 ctatgatagc cgctcctaca ttaactaaca aaggcttcca tcctctatgc tgttccagta
     1861 caggtcgagc tctctcaatt tctctttgac atgtttgctt gaaattttcg tatgcctcgg
     1921 gtgttttatg ataaaaatac agttgggagg ctattaataa ttcctgatgc agtctgttag
     1981 ctgcttttga cgcagactca taatgataag gatcaacttc tgcttttttg cttaattcct
     2041 cagccttttt tctgatattt tccaattcag tattaaattg ggtagtgaat gaagttttgg
     2101 tgagctccaa ctcatttaaa aatgtttctt tttcatcttg agagattaat tcagaattaa
     2161 caaaagaaag taatgtattt ttgagtttgg catcagttat ttgttgagaa tacttaatat
     2221 taatttgaat ctgatccatg tcatcatagg tgatgctagg gatacctcct ataaaataaa
     2281 gaatgtacag attattgaaa agagcagtaa ttctttgcag cgcctctcta tttttaggac
     2341 aaatggttag aacattatga gctagattga tatcaatttt ttcacaagaa tgtttaaacg
     2401 atgacatact aaacctcata taattcagag atttccctat gcaacaattc atttccattg
     2461 aaggcaggtc aagtatatgt agacaagctt aagattttat taagaagcgc cttaaattta
     2521 acaatttttc aaaaaaactt tacgattttt tgaaatgcaa aaaatatcat taacacttgc
     2581 agatttcttt tataaaaacc tacacacttc atccacttga tggttacctt gctgaaagca
     2641 gagttgccta tgaaagcagg taaaatcaat gggaaaacag gtaaaatccg tgggttatta
     2701 gcagaatccc aataattaat accactatgg aaatcacata ataacctgtc cctgtatagg
     2761 ctttttgact acatttcacc ataaactcgg gaaatccaag ccataatatt gatttaatca
     2821 aaataagcca cgctaccagt gtaactaata cctctgattc aggaacccaa atgttatgga
     2881 ccagtacaag gcaaatacca ataattaacc ccaagcttcc agccgttaca atagtggcac
     2941 tgccttcttt gagatgagtc aacaattcac gataatatga agctcgagaa agcattataa
     3001 ttcccacaat aagaagatag aggccgattg cttgtgccaa aaataaagag tgaattgatt
     3061 cttgcatggt tggctccttg tgattccgct cctaaattaa ttatagtaca tgcgggattg
     3121 gatttgttaa ccaggcaggt acttgctagt tactactcat ctaaaacaac ttgtgtatta
     3181 tatttggttc tattaagaca aaagctgctt ctgaattttc taatattggg ctcattagcg
     3241 aatactcgtc tggcaaattc attgtaatga ttcatatctt tgacatgaat aataagcagg
     3301 taatctgtgt ctcccgagac aaaatagcat tgcataacct caggctcttc gtgcattttt
     3361 ctttcaaaat gagttagcag atcctctctt tgtttttcaa gagtaatatt gacgaacaca
     3421 attaatggtc tgcctacttt aaatggatca accaaagcaa catcgttaac gataattttt
     3481 tcctctctca ggcgtttgac tcttcgaaag cagggtgggg cagagattcc aactatatct
     3541 gccaatgcct ggttagtaat ttgattattt ttctgaag
//
LOCUS       DACVWI010000251         3570 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.252, whole genome shotgun sequence.
ACCESSION   DACVWI010000251 DACVWI010000000
VERSION     DACVWI010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.252"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(238..1611)
                     /locus_tag="JBH85_13920"
     CDS             complement(238..1611)
                     /locus_tag="JBH85_13920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HAU0947291.1"
                     /translation="MFQSILIIALMTFSFITKAALPADPIQRCLDIRRLVDITSRQKM
                     AAKEPGVLRFKFHKISASELPLDNPVGNMDEVIQALNNQIENCNNSYGEFQTVTIAGH
                     QFKRQEWCLNTNKKMLTLAKAAHGDFKKFLSSIKTEFDWYKSDGWPENHAGFKKGEFQ
                     FTAYYAPAAVEARTNRGGAFLYPLYSNPGVVSVILESKKYNLKTPLCGVDPLSKVMRG
                     FCLKNADGTYSVAPDREEIEHGALNPKYIIGYLKDPNDSAFLMLQGSGSLLLDGKLFH
                     INYDGANGRPRTMLGRIVQCAQDPTCGGNLDKMERCAKDPKCHDEAKLRCNVSKKIRQ
                     SAASEKLIRQYLNNLTPDKADNLRNRDQSYVFFAKEDGGPYGSENISLTPHVSCATDH
                     RVIPVGMNFIYHCKKATSWCVAQDAGGAIIGAHVDVYKGEGNQAGVEANQLNHTGTLF
                     VALPKRK"
     gene            2129..2794
                     /locus_tag="JBH85_13925"
     CDS             2129..2794
                     /locus_tag="JBH85_13925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947292.1"
                     /translation="MTLILKMKKFKLMAKEQCFAFIKNAVNVGMDEVIYSNGTNKTFI
                     TDGLATCAAVAIYGSDSGCSAAFTHMSSEASDKDDKRKETILNEMLEYVLKSNSLSDV
                     KLIISPSRIQEKHLISFILEWVKQKKIAHSLLETGGDSAVFNIDMDSRVLMFSTSLQL
                     KQDVSDKTWHGHGIIIGQSEGIPVIEKHKKHFVFFAEDISSQITKFSDPPKTVGLAAA
                     VSA"
     gene            2861..3352
                     /locus_tag="JBH85_13930"
     CDS             2861..3352
                     /locus_tag="JBH85_13930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947293.1"
                     /translation="MLSRYVNFIIDCSLCSICRWCMMRRHFIIIVLGIFQVGCIPLAE
                     HHNKISPATAHEEYHDVNFSNLYEKNRSFPALETDIYAILDGILISSNQHTHLGKKQS
                     KLLEEYVRQNRLFCQKGFDQEWMNQLKQNLDKLEKTENNRIASAVNKKMQTLFAERQC
                     NTW"
BASE COUNT         1085 a          643 c          691 g         1151 t
ORIGIN      
        1 tatatattaa aaatatgtgg ttttaatggc gagcttgggc gatgttaatc agtaccccaa
       61 tggaatcatt ttgttctcag atcataggaa aaagcttagc cgcattttcc ttgctcattg
      121 cgcaaagtaa tccaaatcaa aaagcattct tatttattcg gttgtagatt aacagcaccc
      181 taaatgacca tagccaataa aagtaattac tcgaaataag tattggttgc cttctttcta
      241 tttccgttta ggtagtgcca caaataatgt tccagtatga tttaactgat ttgcttccac
      301 acctgcttga tttccctcac ctttatagac gtcaacatga gcccctataa ttgcaccgcc
      361 tgcatcctga gctacacacc atgaagtagc ttttttgcaa tgatagataa aattcattcc
      421 aacaggaata accctgtgat cggttgcaca tgacacatgg ggggttagag aaatattttc
      481 tgaaccataa gggccaccat cttctttggc aaaaaataca tagctttgat ctcgattccg
      541 taaattgtct gctttatcag gggtaagatt gttcagatat tgccgaatga gcttttctga
      601 tgcagcgctt tgcctgattt ttttagatac gttgcagcgt aacttggctt catcatggca
      661 tttcggatct ttagcgcaac gttccatttt gtcaagattg ccaccacagg ttggatcttg
      721 agcgcattgg actatgcgac caagcatcgt gcgtggcctg ccgttggcac catcgtaatt
      781 gatgtgaaac aatttgccat caaggagtaa tgaaccagag ccttgtagca ttaaaaaagc
      841 agagtcattt gggtctttaa gatagccaat tatatatttt ggatttaaag ccccatgctc
      901 aatttcttct cggtctggtg ctacagagta ggtgccgtcc gcatttttca ggcaaaatcc
      961 acgcatcact ttgctaagcg ggtccacccc gcaaagagga gtttttaaat tatatttttt
     1021 gctttccaaa ataacactga caactcctgg gttactataa agaggataca aaaatgctcc
     1081 acctcgattg gtgcgggcct cgacggcggc aggggcgtaa taggcggtaa attggaattc
     1141 acctttttta aatcctgcgt ggttttccgg ccaaccatcg cttttatacc agtcaaactc
     1201 ggttttgatg ctcgataaaa attttttaaa atcaccatgg gcggcttttg ccagagtcag
     1261 catttttttg ttggtattta agcaccattc ctggcgtttg aattgatggc cagcgattgt
     1321 tactgtctgg aattcaccat agctattatt gcagttttca atctgattat ttaatgcctg
     1381 gataacttca tccatattac ccacagggtt atctaacggg agttctgatg ctgaaatttt
     1441 atgaaattta aaacgtaaca ccccgggttc tttggctgcc attttctgtc ttgaggtgat
     1501 atccacgagc cttctaatat ccaggcagcg ctggattgga tcagcaggga gggctgcttt
     1561 agtgatgaag ctaaaagtca ttagtgcaat tattagaatg gattgaaaca ttggtatcct
     1621 ttagcttagc tatggttgag gcattgcccg tccattgatt tcaattagta acaagaatta
     1681 tataggctat tgaccaactc atcaaagaga tgaatttaca taaattctgc caccctataa
     1741 ctaccttatc attatacaga aatagtgtcg aatcccaatt gtccctgttt aaaaagcgtt
     1801 tcaaaccaaa agcttacata catcagtgga ttctcttaac ttatctgcga ttgaagcact
     1861 tcttcttaag cttgaaactt tattgtccag aaaagacttt ttaagttatt gtcaaatatg
     1921 gcgtatagca ccggttagcc tcagtgtttg gttgaaccta gcgatttatt aatcatagtg
     1981 ttcaacataa aaacaaacca ataatttttt attgggttta tttaacggga taacacggat
     2041 aaatttttca taaaaattat atgattttct tttcataaga ttcatttttc atttaaaatg
     2101 taaaaaataa tgacaatttg gtttataaat gactttgata ttgaaaatga aaaaatttaa
     2161 attgatggcg aaagagcaat gttttgcctt tataaaaaac gctgtaaatg ttggtatgga
     2221 tgaggttatc tatagtaacg gtacgaataa gacttttatt accgatggat tggctacctg
     2281 cgctgctgtt gctatctacg gcagtgatag cggttgttct gccgccttta ctcatatgtc
     2341 cagtgaagct tcggacaagg atgataaacg aaaagaaacg atattaaatg agatgttgga
     2401 atatgtttta aaaagcaatt cattatccga tgttaaatta attatttcgc cttccaggat
     2461 tcaagaaaaa catttgattt cctttattct ggaatgggta aagcaaaaaa aaattgctca
     2521 ctccctgcta gaaacagggg gtgattcagc agtattcaat atagatatgg acagtcgtgt
     2581 attaatgttt tcaacttcac tgcaattaaa gcaggatgta tccgataaaa catggcatgg
     2641 tcatggtatt atcattggcc agagtgaggg tattccagtg attgagaagc ataaaaaaca
     2701 ctttgtattc tttgcagaag atatttcctc tcaaattacc aaattttcag atcctcctaa
     2761 aacagttggt ttagcagccg cagtaagtgc ttagaacaag catgagctgg ataaaatgaa
     2821 atgaatttcg tatcttagtc aaaattgaaa tatttcctca atgctgagta gatatgtaaa
     2881 tttcataata gattgttctt tatgctcaat ttgcaggtgg tgtatgatga gaagacattt
     2941 tattattatc gtgcttggta tattccaggt cggttgtatc cctttggcag aacatcataa
     3001 taagatttca cctgctacgg cgcatgaaga gtaccatgat gttaattttt ccaatttata
     3061 tgaaaaaaat cgctcttttc cggcattaga aaccgacatt tatgctattt tggatggaat
     3121 cttgatttcc tcaaaccagc atacgcatct tggtaaaaaa caatcgaaac ttctggaaga
     3181 atatgtgcgc caaaatagat tattctgtca aaaaggtttt gatcaggagt ggatgaatca
     3241 attgaagcag aatttggaca agttagaaaa aaccgaaaac aatcggattg cgtctgctgt
     3301 aaataaaaaa atgcaaacgc tgtttgctga acgacagtgc aacacgtggt agccagggct
     3361 tgtcatttta taggcagcct ggttcaaatc acatgcgaac tcaatctttc gaaccattga
     3421 tcacagtatt ttttgtgcag gatatcgtgt catgagaaga gtgattttgg ttcaacaatt
     3481 ttcaattcca tatcatgtag ttagggataa caacgggaaa gacaagcaat tagaattgta
     3541 tatttataaa tcatattgat cattatttta
//
LOCUS       DACVWI010000252         3566 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.253, whole genome shotgun sequence.
ACCESSION   DACVWI010000252 DACVWI010000000
VERSION     DACVWI010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3566
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.253"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(165..1535)
                     /gene="bioA"
                     /locus_tag="JBH85_13935"
     CDS             complement(165..1535)
                     /gene="bioA"
                     /locus_tag="JBH85_13935"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HAU0947294.1"
                     /translation="MNMIKSRLYLSTKIFKMVNTDQLIAKDLKHIWHPCSQMKDFETF
                     PPIVVNKAQGSYLYTNKGPVIDAISSWWCKSLGHGHPAVIAAIKNQLDCFEHVISANT
                     THPAAVELAEKLSEITGKQHVFFASDGSSAVEIAMKLAIHASQIKGHKNKNQFIALKN
                     GYHGETIGTMSVSDLGLYKTPYASFGVQCHFIDDIPYVSGLKDPLWTNCDAYWNNVVQ
                     QLNKICDKVCAILLEPIIQGAGGMLCYSADFLSKISSWAKEKDIYLIADEIMTGIGRT
                     GEWLACDHARVQPDLICLSKGLTSGSIPFSCVMIDSTLFDLFYDDYHTGKSFLHSHTY
                     SGNPLAIGAALATIKTIEQDNILMHSQELGKIMFSYLQDIARDSRKLVNVRGVGAVVA
                     ADLIESGQARIGFKIYQEAIKQGALIRPIGNTLYWLPPLNTDKEIIGKLAEITLNSIE
                     KAYNKA"
     gene            1560..2507
                     /gene="bioB"
                     /locus_tag="JBH85_13940"
     CDS             1560..2507
                     /gene="bioB"
                     /locus_tag="JBH85_13940"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HAU0947295.1"
                     /translation="MSEEKKQWSISDIEAIYQQPFNDLLYQAHTIHRTYHDPNSLQFA
                     TLLSIKTGACPEDCGYCSQSGHYKTHVEKEKLMSVEEVLQCAKEAKEGGAKRFCMGAA
                     WRCPPDKAIPQLKEMIEGVKSLGLETCMTLGMLTKEQASHLKEAGLDYYNHNIDTSPS
                     YYDKVVTTRKFSDRLDTLNNVRSAGINVCCGGILGLGETREDRIEFLLTLANMETPPE
                     SVPINRLIPVEGTPLAQAERVEGIELVRTIATARILMPKSAIRLTAGRTEMSDELQAL
                     CYFAGANSVFIGDKLLTEDNPQRFKDKTLFNKLGLTEMV"
     gene            2508..>3566
                     /locus_tag="JBH85_13945"
     CDS             2508..>3566
                     /locus_tag="JBH85_13945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAU0947296.1"
                     /translation="MTLNIKINEYTAQLQEQGLLRTRQILETGKIDYIRFDSNDYLSL
                     TEDRRIAEAYQKGYELYPCGSGASMVLSGYHSSHQTLERAFAEMLGVDDCLLFSSGYC
                     ANLAITALLGRLGTHCFIDKSVHASIYDGLALSRVTYSRYIHNDMNALSALLKSHLGD
                     SVLITEGIFSMSGQIAPLSTISTLCKENGSELFVDEAHAFGVIGPQGMGSVPGHGLTQ
                     NEVPLRVIPFGKAFASQGAVVGGRKDWINALLQTARSFVYSTAISPALCYGLLKTLEI
                     IAAADSRREKLNQLVAQFKELIKSSPLNWLDSDTPIQQLRLGCPHKALHYASELKKDG
                     IYCSAIRAPTVNSASSGLR"
BASE COUNT         1059 a          650 c          752 g         1105 t
ORIGIN      
        1 tttatcgtca acatagtgcc cagtttagat tcaaaccaaa gaagagttag gttagcaggt
       61 tttaggcaaa ttacttggtt ttgggccaag gacattgcta ttctttggac aattggcgaa
      121 cagatttgtc tttaaactat ttgtgaataa ccttactcat atccttaagc tttgttatag
      181 gctttttcta tagagtttaa tgtgatttct gctaatttcc caatgatttc tttatctgtg
      241 ttaagaggtg gtaaccaata gagagtattt ccaattgggc gaatcagtgc gccttgtttt
      301 attgcttcct gataaatttt aaatccaatt cttgcttgac cgctctctat gagatcagcc
      361 gcaacaactg ctccaacacc acgaacattt acaagttttc tactgtccct tgctatatcc
      421 tgcagatagg aaaacatgat tttaccaagt tcctgactat gcatcagtat attatcttgt
      481 tctatggttt taatagttgc caaagcagcg cctatagcaa gtggattacc actataggta
      541 tgtgagtgca aaaaagattt ccctgtatgg taatcatcat aaaaaagatc aaataaggta
      601 ctgtcaatca tgacacagct aaatggtatt gagccggaag ttaatccttt agatagacaa
      661 attagatcag gttgtaccct tgcatgatca caggctagcc attctccagt tctgcctata
      721 ccagtcataa tctcatcagc aattaaataa atgtcttttt ccttagccca tgacgagatt
      781 tttgagagaa aatctgcact gtaacatagc atacctccag caccctgaat gataggctcc
      841 agaagtatcg cgcaaacttt atcgcaaatt ttattcaatt gttgtacgac gttattccaa
      901 taagcatcac aatttgtcca taagggatcc ttaaggcctg agacataggg aatatcatcg
      961 atgaaatggc attgcacacc aaacgatgca tagggagtct tatagagtcc taaatcactg
     1021 acactcatgg tgccaatagt ttctccgtgg tagccatttt ttaaggcaat gaattggttt
     1081 ttatttttgt gcccttttat ttgtgaagca tgaatggcta atttcatggc aatttcaaca
     1141 gcactggaac catcactggc aaaaaacaca tgctgttttc ctgtaatttc acttaatttt
     1201 tcagctaatt ccactgcagc agggtgagtt gtattggcac taatcacatg ctcaaaacag
     1261 tccagttggt ttttgatagc agctatcact gctggatgac catgccctaa tgatttgcac
     1321 caccaactgg aaattgcatc aatcacgggg cccttattgg tatagagata gctaccttgt
     1381 gctttgttga caacgatagg ggggaatgtt tcgaaatctt tcatttgtga acaaggatgc
     1441 caaatgtgct ttaagtcttt tgcaataagt tgatctgtgt ttaccatttt aaaaattttg
     1501 gttgacaagt ataggcgcga ctttatcatg ttcactattc tgaattaaag ggggtagccg
     1561 tgtctgaaga aaaaaaacag tggtcaattt ctgatattga agcaatttat caacaaccat
     1621 ttaatgattt gctttatcaa gcacatacca ttcataggac atatcacgat cctaattctt
     1681 tacaatttgc aaccttgcta agcattaaaa cgggcgcatg cccagaagat tgtggctatt
     1741 gctctcaaag tggtcactat aaaacgcatg tagaaaaaga aaaattgatg tcagttgaag
     1801 aggtattgca atgtgccaaa gaagcaaagg agggtggggc caaacgtttt tgtatgggag
     1861 ctgcatggcg ttgtccacct gataaagcaa ttccgcagct aaaagaaatg atagaaggag
     1921 taaaatcttt agggcttgaa acctgtatga ctttaggcat gcttaccaaa gaacaggcct
     1981 ctcatttaaa ggaggctgga ttggattatt ataaccataa tattgatacc tcaccatcct
     2041 attacgataa ggtggtaacc actcgaaaat tcagtgatcg attagatact ttaaataacg
     2101 ttcgttcagc gggaattaat gtgtgttgtg gtggtatttt aggattgggg gaaaccagag
     2161 aagatcgaat cgaattttta ttaacattag ctaatatgga aacccctccg gaaagcgtgc
     2221 caattaatcg tttaattcca gtggaaggaa cacctttagc ccaagctgag agagtagaag
     2281 ggattgaatt ggtaagaacc attgctacag caagaatttt aatgcctaaa agtgctatta
     2341 gattgacagc tggtcgaacc gaaatgagcg acgagttaca agcactttgc tattttgccg
     2401 gagccaattc tgtgtttatt ggcgataaat tattgacaga agataatccc cagcgcttca
     2461 aagacaaaac tctttttaac aaactgggtt tgactgagat ggtataaatg actcttaata
     2521 taaaaattaa tgagtataca gcacagctgc aagaacaagg attattgcgt acaagacaaa
     2581 ttttagaaac gggtaagata gattatattc gatttgattc taatgattat ttgtcgctca
     2641 cagaagatag gcgaattgct gaagcctatc aaaagggata tgagttgtat ccttgtggaa
     2701 gtggtgcttc gatggtttta agtggctacc atagtagcca ccaaaccctt gagagggcct
     2761 ttgctgaaat gctgggagta gatgattgtc ttttattttc ctctggctac tgtgcaaatt
     2821 tggccattac ggccttgctt gggcgtttgg gaacacattg ctttatagat aaaagcgttc
     2881 atgcgtcaat ttatgatgga ttggctttgt cacgagtaac ctactctcgt tacatacata
     2941 atgacatgaa tgctttgtct gccttgttaa aatctcattt gggcgattct gttttgatta
     3001 cagaaggtat ttttagtatg agtgggcaga tagcgccgtt atcaacgatt agtacgttat
     3061 gcaaagagaa tggctctgag ctctttgtag atgaagcgca tgcttttggt gtgattggac
     3121 cgcaaggaat gggctctgtg ccaggccatg ggctgacaca gaatgaagtt cccttgcgag
     3181 ttattccttt tggtaaggca tttgcttccc agggcgcagt ggttggtggg cggaaagatt
     3241 ggataaatgc tttgttgcaa acggcacgtt cttttgttta ttcaactgct attagtcctg
     3301 ctttatgcta tggtttgctc aaaacattgg agataatagc agctgccgac tccagaagag
     3361 aaaaattaaa ccaattagtt gctcaattca aagaattaat aaagtcttcg cccttaaatt
     3421 ggctggattc agatactcca attcagcaat taaggttagg atgccctcat aaggcattgc
     3481 attatgccag tgaactgaaa aaagatggga tttattgctc tgctatcaga gctccaacgg
     3541 taaatagtgc ttcttccggt ttacgg
//
LOCUS       DACVWI010000253         3553 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.254, whole genome shotgun sequence.
ACCESSION   DACVWI010000253 DACVWI010000000
VERSION     DACVWI010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.254"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            32..628
                     /locus_tag="JBH85_13950"
     CDS             32..628
                     /locus_tag="JBH85_13950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947297.1"
                     /translation="MKIRFTLLCFSIFLTGCVSKPPADINNICNIFKQYPKWYVDSKD
                     VERRWKVPVPVQMAIIHQESKFNARARPPRTKLLWIIPWTRPSTAYGYTQALRSTWDN
                     YKRTNGWFWSSRDDFGDGVDFIGWYANQANIKAGIPRTDAYSLYLAYHEGIGGYQRKT
                     YLKKPWLISVARKVKAKSQLYAMQLNSCKDSLKSRSWW"
     gene            969..1679
                     /locus_tag="JBH85_13955"
     CDS             969..1679
                     /locus_tag="JBH85_13955"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HAU0947298.1"
                     /translation="MLLYLKVYNDYELFKEFWMRLMLLGGPGAGKGTQASLLINRYKI
                     PQISTGDMLRAAIAKGTPLGLSAQKIMESGGLVSDDIIIGLVKERLKNPDCDRGFLFD
                     GFPRTLVQAEALKDAEIHLDHVIEIAVDDEEIIERISGRRIHQPSGRVYHVVNQPPKN
                     PGVDDITGEPLIQRDDDKEETIRKRLQVYHSQTAPLVQYYKEWAESGSKEAPKFHTIS
                     GTGTVEQIFDNIVTILET"
     gene            1688..2050
                     /locus_tag="JBH85_13960"
     CDS             1688..2050
                     /locus_tag="JBH85_13960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HAU0947299.1"
                     /translation="MPTQTINSAEFESLINDNEIVFIDFWAEWCAPCKQFSKVYEQVS
                     DQFPAIKFVKVNIEEQQELADFFEIRSIPHLMVFKDSIVIYSDAGSIPESTLKELAQQ
                     ALDADVSEIRAQLEQKDK"
     gene            complement(2010..3530)
                     /locus_tag="JBH85_13965"
     CDS             complement(2010..3530)
                     /locus_tag="JBH85_13965"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HAU0947300.1"
                     /translation="MDQVFDVAIIGGGINGCGCAADAALRGLSVILFEQDDLASKTSS
                     SSTKLIHGGLRYLEHYEFGLVKKALQERQTLLNLAPHLVHSQSFVLPYLKHMRPSWLL
                     RLGLFFYDHLSRKNHLPKSRSIHRNNKNNYFTPLKEELNRGFLFYDATTDDARLTILN
                     AIQAKNHGASIRPHAKVTHAEVINNIWHLTIQPTKGQSYKAYAKSIINATGPWVQSIA
                     QLTHTPIQKDITLVKGSHIIVPKLFEGNHAYFLQHNDQRVIFVIPYHGFSMIGTTDIH
                     YTGDLNHIEIGEEEIDYLIELVNAYFKFKITKEDVVHSWSGIRPLLADDSKEVKSLSR
                     DYSYEFNHSPAPIITIFGGKITTYRQLAEEVVDQLTPVFPQMKPSKTQHTPLPGATLA
                     DMSFTQYVNYAKTKYHWLDDELLNRYLNTYGCYTEIFLSQCNNMEAMGKKYGPSLYQV
                     EVDYLILEEWANYCDDILNRRTKLGLTMDNASKKELADYLASISTYPSAQAELVFH"
BASE COUNT         1084 a          626 c          744 g         1099 t
ORIGIN      
        1 tactgcagga tgagtttttt atcattaaat catgaagatt cgatttactt tactttgttt
       61 tagcattttt cttacgggct gcgtcagcaa accgccagca gatattaata atatttgtaa
      121 tatatttaaa caatatccga aatggtatgt ggactcaaag gatgttgagc gacgctggaa
      181 ggttccggtt ccggtccaaa tggcaattat tcatcaagaa tcaaaattta atgctcgagc
      241 caggccacca agaaccaaac tgttatggat aattccatgg acaaggccat cgacagctta
      301 cggatatact caggcgttgc gttcgacttg ggacaattat aaacgcacca atggatggtt
      361 ttggtcatca cgcgacgatt ttggagatgg tgttgatttt ataggatggt atgctaacca
      421 ggcgaatatt aaggcaggta ttccccgaac agatgcttac tcactttatt tggcttatca
      481 tgaagggata ggtggttatc aaaggaaaac ctatttgaaa aaaccatggt tgatttctgt
      541 agcgcgcaaa gtgaaggcta aatcacaact ttatgcaatg cagctcaatt cttgtaaaga
      601 ttcgttgaag tcacgttcct ggtggtaatt aagatggcct aattatgttc ttgccagtgg
      661 aaataaagtc agatttggaa catatatgat tttgtgtgtt tataataacc gccataacac
      721 gaagtcaatc ttaagtaagg tatacatttc tatttttgaa tagaaaatcg ggtaaaatcc
      781 tgtttattta acagaataaa gcttgaaaag aaaaggtgag tgatagtctg cttatgatgt
      841 gcctactcaa tccttatagt cttaaaaaac ctgttttttg agctgctcat ttagtttttt
      901 aagactatgc atgaccaaaa ttatttgtca atgtgcacta aataattata aaattttata
      961 gtgctactat gttactatat ttgaaagtat ataatgatta cgaattattt aaggagtttt
     1021 ggatgcgatt aatgctttta ggtggaccgg gagccggcaa aggaacccaa gcttcacttt
     1081 taattaaccg ttataaaatt cctcaaattt ctaccggtga catgctgcgt gctgccatag
     1141 caaaaggtac gcccttagga ttaagtgccc aaaaaatcat ggaatcaggt gggttggtgt
     1201 ccgatgatat tattatcggg ttagtgaagg aaagactaaa aaaccctgat tgtgatagag
     1261 gattcctgtt tgatggtttt ccaagaacat tggtccaggc cgaagcttta aaagatgcag
     1321 aaatccattt ggatcatgtg atagaaatag ccgtcgatga cgaagaaata attgaacgca
     1381 tcagcgggcg acgcattcac cagccttctg gtagggttta tcacgttgtg aatcaaccgc
     1441 cgaaaaatcc gggtgtagat gacatcacag gtgagcctct gattcaacgt gatgatgata
     1501 aagaagaaac catacgtaag cgcttacagg tttaccatag ccaaacagcg ccattggtgc
     1561 aatattataa ggaatgggct gaatctggct ctaaagaagc tccaaaattt cacactatta
     1621 gtggtacagg tacagtagag caaatatttg acaacatcgt aacgatactc gaaacttagg
     1681 agttaacatg ccgacccaga ctattaacag cgctgaattt gaatcattaa ttaatgacaa
     1741 tgagatagtt tttattgatt tctgggctga gtggtgtgct ccctgtaagc aattttcaaa
     1801 agtatatgag caagtttccg atcaatttcc agctattaaa tttgttaaag ttaacattga
     1861 agagcaacaa gagttagcag attttttcga gatccgatcc atccctcatc ttatggtttt
     1921 caaagacagt attgttattt attctgatgc tggaagcata cccgagtcca ctttaaaaga
     1981 attggcgcaa caagcacttg atgctgatgt tagtgaaata cgagctcagc ttgagcagaa
     2041 ggataagtag atatactagc cagataatcc gcaagttctt ttttactggc attatccata
     2101 gtaaggccga gtttagtgcg gcggttaagt atgtcatcac aataattcgc ccactcttct
     2161 aaaataagat aatctacttc cacctggtag agtgatgggc catatttttt ccccattgct
     2221 tccatattgt tgcattgcga aagaaaaatt tcagtataac aaccataggt attgaggtag
     2281 cgatttaata gttcatcatc cagccaatga tattttgttt tggcgtaatt gacatattga
     2341 gtaaaactca tatctgctaa agttgcccca ggtaagggcg tatgttgtgt tttcgatggc
     2401 ttcatttgtg gaaatacagg ggtaagttga tctacaactt cttcagccaa ctgtctataa
     2461 gtggttattt tccctccaaa aattgtaata atgggagctg gggagtggtt aaactcatag
     2521 gaatagtcac gacttaatga tttgacttct ttgctatcat cagctaacaa aggccttatg
     2581 ccgctccagg aatggactac atcttcttta gttattttaa acttgaagta ggcatttacc
     2641 aattcaatta agtaatcaat ttcttcttcg ccaatctcta tgtggttaag atccccagta
     2701 tagtggatat cggtggttcc aatcatacta aagccatgat aggggataac aaaaataacc
     2761 cgctgatcat tatgttgcaa gaaataggca tgatttccct caaaaagttt ggggacgata
     2821 atatggctac ctttaaccag ggtaatatct ttttggatag gtgtatgagt taattgggca
     2881 atggattgca cccatggtcc tgtggcatta atgatgcttt tagcataagc tttatagctc
     2941 tgccctttgg tgggctggat agttaaatgc catatgttat tgattacctc tgcatgggtt
     3001 actttggcat gtggccttat gcttgcgcca tgatttttgg cttgtatggc attaagaatg
     3061 gttaagcgag catcatcggt ggtggcatca tagaaaagaa aaccgcgatt tagctcctct
     3121 tttagtggcg taaaataatt attcttatta tttctgtgga tcgatctgga tttgggtaaa
     3181 tgattttttc gactgagatg atcgtaaaaa aataagccta acctcaataa ccatgagggg
     3241 cgcatatgtt ttaagtaggg caaaacaaaa gattgggaat ggactaaatg gggagccaaa
     3301 ttgagaagcg tttgacgttc ctggagtgct tttttgacta aaccaaactc ataatgctct
     3361 aaatacctta aaccaccatg aattaatttt gtgctacttg atgatgtttt cgaagccaga
     3421 tcgtcctgtt cgaagagtat cacagacaga cctcttaatg ctgcatctgc agcgcagccg
     3481 cagccattga tgcctccacc aataattgca acatcaaaaa cctgatccat gtttttatct
     3541 ccgaaaaaag att
//
LOCUS       DACVWI010000254         3540 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.255, whole genome shotgun sequence.
ACCESSION   DACVWI010000254 DACVWI010000000
VERSION     DACVWI010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.255"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            28..921
                     /locus_tag="JBH85_13970"
     CDS             28..921
                     /locus_tag="JBH85_13970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947301.1"
                     /translation="MFSLKKTTAAVFALGSSALFAGTMGPVCTPGNVTVPCERTAWDI
                     GITALYLQPTYDADWGYNGFTDVGGWRNWHDVDLEWDWGFKLEGSYHFNTGNDINVNW
                     YHLDANTDHWAFVDQLHAYDITWDAVNAELGQFVDFSANKKMRFHGGVQYAYIKTDVN
                     RHLNGFFLDNFNSKFNGFGPRTGLDMNYVFGNGFGIYAKSAVAILVGTSKFVDNCTVC
                     GFSYGSKNAIVPEVEMKLGADYTYAMAQGDLTLDVGYMWFNYFNALHNTAAVNVGLGT
                     SLETDFSASGPYIGLKYVGNV"
     gene            1242..1892
                     /locus_tag="JBH85_13975"
     CDS             1242..1892
                     /locus_tag="JBH85_13975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1975 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947302.1"
                     /translation="MGYNETIYHKPFIKINMPDVLGKPDATQIPDDVWLDILINYLQP
                     QDIVNLSEINNRLSRLFKTQHTQSEQLNQKKTLGILKVFAGYSSTFLFARLNGKQRLF
                     KTRNWSAADSDNINPILMPISLPENISVIESIQSTYKHTVVVGRDKHDQIIVATNKIN
                     QDYAKQETSHNQLIPLPLRDINISLVSAGNEEDYILNPIFSFPATQQGNCILNCIK"
     gene            1868..2728
                     /gene="pieG"
                     /locus_tag="JBH85_13980"
     CDS             1868..2728
                     /gene="pieG"
                     /locus_tag="JBH85_13980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieG/LegG1"
                     /protein_id="HAU0947303.1"
                     /translation="MHLELHQINGNDPLGTIIGERNYQLPIPLPYTMKTVKQIHSGIW
                     HTVIRGYDQYNRPQIATFGKNYDGQLGTGDCENRDTPTPIKLPPEMLTFHAIQTGFFH
                     TIATGLDKNGFPIVASCGYNSDGQLGCGDKDNKNTLIPIKLPENMKSVEMVATGVKHT
                     VIVGKDINNKPVVATCGHNGYGQLGTGDEENRLCLTPIGIPEDITSVDYVGAGAYHTV
                     ICGRNIKNQPIITLCGCNSDGELGFAPQKIAKKSSLMTNPAMFFPPRQDKSAINNLMK
                     ISKFSPCNLL"
     gene            2906..3502
                     /locus_tag="JBH85_13985"
     CDS             2906..3502
                     /locus_tag="JBH85_13985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HAU0947304.1"
                     /translation="MECIMPTSKKILMIVGDFNEDLEVYFPYQAMLMNNYLIDTVSPG
                     KNKGDFIQTAVHDLDKPHLQSYTEKLGHLFPITADFSKITLKDYDALIIPGGRAAEYQ
                     RLNKDILAIIRHFHDADKPIACICHGIQILAEAGILEDKKCTTVGFCEPDVRKAGGHF
                     IDTGMDGVVVDGKLVTGATWLGNAPWMRAFLHILQNEG"
BASE COUNT         1096 a          712 c          707 g         1025 t
ORIGIN      
        1 caataataaa tcagtggaga acgggatatg tttagtttga aaaaaacaac tgcggctgta
       61 tttgctctgg gaagcagtgc tttgtttgca ggtacgatgg gtccagtatg tacgccaggc
      121 aatgtgactg ttccttgcga aagaaccgca tgggatattg gtattaccgc actttatctg
      181 cagccaactt atgatgctga ttggggctat aatggtttta ctgatgttgg tggctggaga
      241 aattggcatg atgttgattt agagtgggat tggggcttta aattagaagg ttcttatcac
      301 ttcaacacag gcaatgacat caacgtcaat tggtaccatt tggatgccaa caccgatcat
      361 tgggcgtttg ttgatcaatt gcacgcctac gatattacct gggatgcagt gaatgctgaa
      421 ctggggcaat ttgttgattt tagcgcgaac aaaaaaatgc gcttccatgg cggcgttcag
      481 tatgcctaca tcaaaacaga cgttaatcgt cacttaaacg gcttctttct agataacttc
      541 aattccaaat tcaatggatt tggtccccgt accggccttg atatgaatta tgtattcggt
      601 aatgggtttg gtatttatgc aaaatcagct gtagcaatcc tggtcggtac aagcaaattc
      661 gtggataact gtactgtctg tggtttttct tatggctcca aaaatgcaat agtgccagaa
      721 gttgaaatga agttaggagc agattatacc tatgcaatgg ctcaaggtga tttgactctg
      781 gatgtgggtt acatgtggtt caattacttc aatgccttac ataatactgc tgccgtgaat
      841 gttggcttag gcacttctct ggaaaccgac ttctctgcat ctggccccta cataggctta
      901 aaatatgttg gcaatgtcta aataacccca aattatgctg ctaatctagt catgatcaag
      961 cagcagtatg caaaaaaccc gtattgacat aggctgctaa tacgggtttt ttttatttct
     1021 ctctgtttaa ttaagttagt tatcctatct aagctaactt gtaattatat gataatttcc
     1081 caatcaaatt gagataactt tatgcgaaaa caataattgg tcgccctgtt gggcaacatc
     1141 accaatgaaa aatcacatcc gtgatctgct gcgaaaacta tagtaaacgc aataatctgc
     1201 tggttctgcc tgatgcataa ttcttttcca ttccaaagat cgtgggttat aatgaaacca
     1261 tctatcacaa accgtttata aaaataaaca tgcctgatgt tctcggcaaa cctgatgcaa
     1321 cccagattcc agatgacgtc tggcttgaca ttcttatcaa ttatcttcaa ccacaagata
     1381 ttgtaaacct gtctgaaatc aacaatcgct tgagcagact tttcaaaact caacacactc
     1441 aatctgagca attgaaccaa aaaaaaacat tgggaattct gaaagtattt gcaggataca
     1501 gttccacttt cctgttcgca cgcctcaatg gtaaacaaag attatttaaa accagaaact
     1561 ggagtgcagc agatagcgat aacataaacc caatattaat gcctatctct ctgccagaaa
     1621 atatatctgt tattgaatcc attcaatcaa cctacaaaca cactgtggtt gttggtcgag
     1681 ataaacatga tcagattata gtagcaacaa ataaaattaa tcaggattat gcaaagcaag
     1741 aaaccagcca caatcaactg attccccttc cattacgcga cattaacatt tctttggtgt
     1801 ctgccgggaa tgaagaggac tatattttaa accctatttt ctcttttccc gcaacacagc
     1861 agggcaattg catcttgaat tgcatcaaat aaatggcaat gacccattgg gaaccataat
     1921 tggggaaagg aactaccagt taccgattcc attgccttac actatgaaaa cagtaaaaca
     1981 aatacattca ggaatatggc atactgtgat tagaggctat gatcaatata atcggccgca
     2041 aatcgctact tttggaaaaa attatgatgg tcaattaggc acaggcgatt gtgaaaaccg
     2101 ggatacacct accccgataa agcttcctcc tgaaatgctg acgttccatg ccatccaaac
     2161 cggttttttt cacaccattg ccactggact tgataaaaat ggattcccta tcgttgcaag
     2221 ctgcggttat aactctgatg gccaattggg atgcggggat aaagataata aaaacacatt
     2281 gattcccatc aaacttccag aaaatatgaa atcagtagaa atggtcgcca ctggagtaaa
     2341 acacaccgtt attgtgggaa aggacataaa taacaagcct gtggttgcaa cctgtgggca
     2401 taacggctat gggcagctgg gtacaggcga tgaagagaac cggctctgct taactcccat
     2461 cgggattccc gaggatatta caagtgtcga ttatgttgga gcaggcgcct atcatacagt
     2521 catttgtggg cggaatataa aaaatcagcc aattataacc ttatgtgggt gtaattcaga
     2581 cggtgaattg gggtttgcac cacaaaaaat cgccaaaaaa tcatccctga tgaccaaccc
     2641 agccatgttc ttcccaccgc ggcaagacaa gagcgcaatc aacaatttga tgaaaattag
     2701 taaattctcg ccatgcaatt tgttatgagg tttaattggt ctccatagag aaaaatgaag
     2761 ttctagaatc tcattatttc tcctgtgctt tcttcttctg ttattttcaa ccagccccct
     2821 cccacttata cctattttaa taaacatgtg tttctggaca aggtgaatta atcgctgcca
     2881 tacttaatga attgaatttg taaaaatgga atgcatcatg ccgacttcaa aaaaaattct
     2941 tatgattgta ggagacttta acgaagattt ggaagtttac tttccctatc aagcaatgct
     3001 catgaacaat tacctcattg atactgtttc ccccggcaaa aataaaggag attttattca
     3061 gaccgctgta catgatttgg ataaaccgca tcttcaatct tacaccgaaa aattagggca
     3121 cctattcccc attacagcgg atttctccaa aatcacttta aaggattatg acgctttaat
     3181 catcccgggt ggaagagctg ctgaatatca acgtttgaac aaagatattt tagctattat
     3241 caggcatttt catgacgccg ataaacccat tgcctgcatt tgtcatggca tacaaattct
     3301 cgctgaggcc ggaatacttg aagataaaaa atgtacgact gtcggttttt gtgaaccgga
     3361 tgttcgaaaa gcaggaggac attttatcga tacagggatg gatggtgttg tggttgatgg
     3421 taaattggtt accggagcaa catggctagg aaatgccccc tggatgagag catttcttca
     3481 tatcttgcaa aatgagggtt aatcatcttt acagagtctt tgaccagtgg caatcagatt
//
LOCUS       DACVWI010000255         3517 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.256, whole genome shotgun sequence.
ACCESSION   DACVWI010000255 DACVWI010000000
VERSION     DACVWI010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.256"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            44..1330
                     /locus_tag="JBH85_13990"
     CDS             44..1330
                     /locus_tag="JBH85_13990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0947305.1"
                     /translation="MNTSNTSFKTLGAICIGNAMEWYDFMIYNFMLLFIAQAFFPNHS
                     PVTSLLATMASSGVALVVRPLGGFILAVWADKYGHHKALMFVFYLMAAATMLITFTPS
                     YSTIGLVATCVIVFARLLQGLATGGEFGISSALLVSLSPSDKKGFYTSLQMVGQLLAI
                     LMGSSACLILTFYCSNQTLYQFAWRIPFALGLLILPLGWILRRRLQREFTWKKEQQDT
                     GKLFILVKQQKRSLLIAFSLVAGCTGSIYTLFSYMPTYCKLYLNLSLTEAYLGTASGI
                     LVSIITIPFFGALSDRIGKKIVMLCALACYFGLIYPLLFLLNQYPGVTILILVENILG
                     LCIGAYFGVLTITVSSLFPPSVRSTCLAVSYNSAVLLFGGFAPFIITALIEYTKNPMV
                     FTYYQMTTVFISLLAVLAYQEERKLSENQPEHLVAI"
     gene            1342..2496
                     /gene="argE"
                     /locus_tag="JBH85_13995"
     CDS             1342..2496
                     /gene="argE"
                     /locus_tag="JBH85_13995"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HAU0947306.1"
                     /translation="MTTLDWLKQLISFDTTSRNSNLSLIEYLANGLNDFKINPILIHD
                     SKEQKANLLATLPGKQGRLEGGIILSGHTDVVPVDGQIWDSDPFQATVKNNKVYGRGA
                     CDMKGFIAVVMALVPQLKEMNLDFPVHFAFSYDEEIGCLGVPSLIDKIVELNYQPRAC
                     IVGEPTLMKPVVGHKGKYSYRCQIHGVAAHSSLTNQGCNAIEHAASFISYLRGMANEF
                     KKYGNRDFSYDVPYTTLTTNLIKGGNAYNTIPNLCEFVFEFRNLSTDSSEDLNQKIMS
                     YVKEELAPSLHQDHPDSNVNLDTIAKAPGLDMPITDPFVRAAQTVCQSDKLMKVAYAT
                     EAGLFQQAEIPTIVCGPGSIEQAHRANEYVEVEQLRLCEEFIINMLRSHF"
     gene            2739..>3517
                     /locus_tag="JBH85_14000"
     CDS             2739..>3517
                     /locus_tag="JBH85_14000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HAU0947307.1"
                     /translation="MEYWIWLKSLSRYRLIGFLVICSSVIIMAFLTAREYYVSKFIFV
                     IGGTGTGKTTVSEEIKTIAEAQNFTVTILSLDHYYLPQSMMDPDKPKNFDVPEALEQT
                     LIQQHLQDLEAGKTIFRPTYDMESSDRVLNGEMKIIPADIIIVEGIFAGEYLSSLRNQ
                     TEKLKIYLQSNQINDNYTRKEDRDIVERKRSSAYAHVAKKNQMAGFFRYVAPHMISSN
                     MVIDNPWLPQQNMTTTEKLPLIAGNNLIKLNEFLSSAESHF"
BASE COUNT         1029 a          600 c          693 g         1195 t
ORIGIN      
        1 tactagtatg tgctttgctc taaatttacc ctcgtaagga aacatgaata catcaaatac
       61 ctcctttaaa acattgggag caatatgtat tggtaatgct atggaatggt atgatttcat
      121 gatttataac ttcatgctgc tttttattgc ccaagctttt tttcccaatc atagtcctgt
      181 gacttccctc ttggctacaa tggcaagctc tggagtggct ctggtagtcc ggcctcttgg
      241 tggttttatt ttagcagttt gggcagataa gtatgggcat cataaagcat taatgttcgt
      301 tttttatttg atggctgccg caaccatgct tattactttt acaccatcct actccacaat
      361 aggtctggtt gctacttgtg tcattgtatt tgcgagattg ttgcaaggac ttgctactgg
      421 tggcgagttt ggcatatcca gcgctctatt agttagctta tcgccaagcg ataaaaaggg
      481 gttttacact tccttacaaa tggtaggcca gcttttggca atattaatgg gatcttcagc
      541 gtgccttatt ttaactttct attgttccaa tcaaaccctt tatcaatttg cctggagaat
      601 accttttgct ttaggactgt tgattctacc tttaggatgg attttaagac gtcgattgca
      661 acgggaattt acctggaaga aagagcaaca ggacacagga aagttgttta tcttggtaaa
      721 gcaacaaaaa cgttctctgt tgatagcttt tagtcttgta gccgggtgta caggctcgat
      781 ttatacctta ttcagctata tgcctaccta ttgtaaattg tacttgaatt tatcgctgac
      841 agaggcgtac ttaggcactg catctggaat attagtcagt attattacta ttcccttttt
      901 tggagcattg tcggatagaa taggcaaaaa aatagttatg ttatgtgctt tggcttgtta
      961 ttttggatta atttatcctt tacttttctt actcaaccaa taccctggtg taactattct
     1021 cattttggtt gaaaacattt taggtttgtg tatcggcgct tattttggag tgttgaccat
     1081 tacggttagc tccttatttc caccatcagt acgttctact tgtctagccg tcagctataa
     1141 ttcagctgtt ctgttgtttg gtggttttgc tccatttatt ataacggcgt tgattgaata
     1201 cactaaaaac cctatggttt ttacttatta tcaaatgacg acggtcttta tcagtttgct
     1261 agcagtcctt gcttatcagg aggaaaggaa gctatctgag aatcagccag aacatctcgt
     1321 tgcaatttaa aaggtaggaa tatgacaact ttagattggt taaaacaact catttctttt
     1381 gatactactt cgcggaactc taatttatca ttgattgaat atttggcgaa tgggttaaat
     1441 gatttcaaga ttaatcctat cctaattcac gatagtaaag agcagaaagc taatctgtta
     1501 gctactttgc caggaaaaca agggcgtttg gaagggggta ttattctgtc tggtcatact
     1561 gatgttgttc ctgttgacgg tcaaatttgg gatagtgatc cttttcaagc cactgttaaa
     1621 aataacaaag tgtatggtcg tggcgcgtgt gacatgaaag gatttattgc agtcgtgatg
     1681 gctttagtcc cacaattgaa agaaatgaac ctggattttc cagttcattt tgcattttct
     1741 tatgatgagg aaattggttg tcttggtgtg ccttctctca tcgataaaat agtggagctt
     1801 aattatcaac cgcgtgcttg cattgtaggt gagccaacct taatgaagcc tgttgtgggt
     1861 cataaaggca aatattctta tcgctgccaa atacatggtg tagctgccca ttcttcatta
     1921 acgaatcaag gatgtaatgc gatcgaacat gccgcgtctt ttataagcta tcttcgaggg
     1981 atggctaatg aatttaaaaa atatggaaat cgagattttt cttatgatgt tccatataca
     2041 acacttacca ctaatctcat caaaggaggt aatgcttata atactattcc aaacttgtgt
     2101 gagtttgttt ttgaatttag aaatctgtct actgacagct cagaggattt aaatcagaaa
     2161 attatgtctt atgttaagga agagcttgct cctagcctgc atcaggacca tcctgactct
     2221 aatgttaacc ttgatacgat agcaaaagct cctggtttgg atatgccgat tacagatcct
     2281 tttgtcagag cagctcaaac agtttgccag agcgataagc tgatgaaagt agcttacgct
     2341 acagaagccg ggctatttca acaggcagaa attcctacta ttgtgtgtgg tccaggtagt
     2401 atcgaacaag cccatagagc aaatgaatat gttgaagtag agcaattacg attatgtgag
     2461 gaatttataa tcaatatgct gcgctctcat ttttgagctt tatcagattg gtaagtaaaa
     2521 aatcatcggt atttgatgct gattttacta gcacttttat aaggtattca caaagatata
     2581 cacagttttt gtggataaca tgattagatg aaatttgatt ggttttaaaa aaatactttt
     2641 ttatcaattg gttattaaaa taaatgtttt ttatgccagc atttgctgta atcattttat
     2701 tttagctaca atctttaaaa tggttcgctt tgtaagcttt ggagtactgg atttggctca
     2761 agagcttatc aaggtacaga ttgatcggtt ttcttgtaat ttgttcctca gttattataa
     2821 tggctttttt gaccgcaaga gaatattacg tgtctaaatt tatctttgtc attggaggaa
     2881 ctggaactgg aaaaacgact gtttcagaag aaattaagac aatagcagaa gcacaaaatt
     2941 tcacggttac gatattaagt ctggatcatt actacttgcc ccaaagtatg atggatccgg
     3001 acaaaccaaa gaattttgat gtccctgaag ctttggaaca aacattaatt caacagcatt
     3061 tgcaggattt agaagctggt aaaaccatat tcagaccgac ctatgatatg gaaagcagtg
     3121 acagagtatt gaatggggaa atgaaaatta ttcctgctga tatcattatt gtcgaaggaa
     3181 tttttgctgg tgagtattta tcctctttaa ggaatcaaac agaaaaactc aaaatttatt
     3241 tacaatccaa tcaaataaat gacaattaca caaggaagga agacagagat atagttgaaa
     3301 gaaaaagatc atcggcttat gcccatgttg cgaaaaagaa ccaaatggca ggatttttta
     3361 gatatgtcgc tccccatatg atttcttcaa atatggtcat tgataatcct tggcttcctc
     3421 aacaaaacat gactactacc gaaaaacttc ctttgattgc aggcaataac ttaataaaat
     3481 taaatgaatt tttatcttca gctgagagtc atttttt
//
LOCUS       DACVWI010000256         3498 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.257, whole genome shotgun sequence.
ACCESSION   DACVWI010000256 DACVWI010000000
VERSION     DACVWI010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3498
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.257"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            41..1489
                     /gene="mavC"
                     /locus_tag="JBH85_14005"
     CDS             41..1489
                     /gene="mavC"
                     /locus_tag="JBH85_14005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavC"
                     /protein_id="HAU0947308.1"
                     /translation="MTTSKLEKTGLHVHEKIKHMVKNYGTMITGIPAEILGQNEAEIS
                     VGYVKKMGNMKENIAEVVRKSEMTQPTNSCGKASNEVCDLLLGTEGASEFEKSSYQVL
                     SGDGSNLKGSLPNKNLLVRVEMDRFNAPQKYQKIKREEFNPETAEKNKIYLLEDQLVY
                     LDIFGKVIDLGQTSDTCHRLFNAITTPFYQNYILYDEYIDPEESAEEAAMFEMGEIVK
                     AKMKNIDCWTATHSFTIFVPESDSEDTRTLYPYQAYWTSHTLQQWFSGDKDEKLSRLG
                     IDGYIEKLALLGTTTDSKIRSSIYGELFSPPGKEHVFCTGMNEKFSPLRVKFKVTEVN
                     PEIALQNLEEVQEFIDTNYPGENAKDQCELYKIKAQEAMTKQLEMRLLIEPTHRKESV
                     TPYKEKNTQSFFSKNLDTTSRIDKMISSVITMENLKILAKEADTLSGKDREKLVEYFK
                     TLPSEQLAEIKAESETAQKAWDEQYGLVLRDK"
     gene            1565..2845
                     /locus_tag="JBH85_14010"
     CDS             1565..2845
                     /locus_tag="JBH85_14010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2148 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947309.1"
                     /translation="MIVRGINMTKIKLESPGFMVHKKLKSMSQSYGVMMTGVPAEVLG
                     QMQAERSIPSINKTGNLKQQIAKEVSKVCHMMTEPTQSCGQASNDVCELLLGKIEAEK
                     FHFTKYEALSADGDNLKNVLENTAPSSTNLLIRFEIDREDPPIVLVKTKNENFNPETA
                     VKNKIYLLENKLYFIDKMGNLFNLGPGKKKCTQLFNAIGDSAEYSLCDPFVLEEPEKP
                     EDFAISEIVDIFNEQKERFDFWIGSHSFTIYIPQTLGESPRQFYPYQAYFGSHTLQDW
                     FVSDKDEYLSRIGIDKYIEKLAVLGKTTNTKERSDIYAEFFSKRGREAFFCAHLNEKR
                     QPLRVKFKITEINPELALKNLQETQEFIDTHPGENPSDKVENYRNRAKLAMTEHLESL
                     LDIKPESSPSLFWKNVDKKEQEMTDSSRYKKGPS"
     gene            2933..3292
                     /locus_tag="JBH85_14015"
     CDS             2933..3292
                     /locus_tag="JBH85_14015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2149 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947310.1"
                     /translation="MMSREKAAGTFFKDYQKKNVMRLLQDSLEKIINEWLKTDDESHT
                     KLKSLQELSEMDINATSFAEHSPLPDFVTRLWLDPHKALDAMDKNISKNEIRKLIKET
                     AREIELVFTHQKAPDYS"
BASE COUNT         1304 a          598 c          666 g          930 t
ORIGIN      
        1 atctacaatt aaatataggg tatctatcag tgaggttaat atgacaactt ccaagcttga
       61 aaaaacgggt ttgcatgttc atgaaaaaat caaacatatg gtcaagaatt atggaacgat
      121 gataaccggt attcctgccg aaatattagg gcaaaatgag gcagaaattt cggttggata
      181 tgtaaaaaaa atgggaaata tgaaagaaaa tattgctgaa gtagttcgaa aatctgaaat
      241 gactcaaccc acaaacagct gcggaaaagc gagcaatgaa gtgtgtgatt tacttttagg
      301 aacagaagga gcgagcgaat tcgaaaaatc aagctatcaa gtattatctg gggatggcag
      361 taatttgaaa ggttctctac ccaataaaaa tttactggtc agggttgaaa tggatcgatt
      421 taatgctcct caaaaatacc aaaaaataaa aagagaggag tttaatcccg agaccgcgga
      481 aaaaaataaa atttatctac tggaagatca gctggtatat ctcgatatat ttggaaaagt
      541 catcgacctt ggacagacat cagacacatg tcatagacta tttaatgcta ttaccacccc
      601 tttttatcaa aattatattc tttatgatga gtatattgat ccggaagaaa gtgctgagga
      661 agcggccatg tttgaaatgg gtgagatagt taaagctaaa atgaaaaaca tagattgttg
      721 gacagcaacc cattctttta ctatatttgt tcctgaatcg gacagcgaag acacacgcac
      781 attatatcct taccaggcat attggaccag ccatactttg caacaatggt tttccggtga
      841 taaagatgaa aaattatcac gcttgggtat cgatggctat atcgaaaaac tggctctatt
      901 aggcacaaca accgatagca aaatacgctc cagcatttat ggagaactat tttctcctcc
      961 aggaaaagaa catgtttttt gtaccgggat gaacgaaaaa ttctcgccat tacgagtcaa
     1021 atttaaagtc actgaagtta atccagaaat agcattgcaa aatttagaag aagttcaaga
     1081 gtttattgat acgaattatc ctggcgaaaa cgcgaaagat caatgcgaac tttataaaat
     1141 aaaagcgcaa gaagcgatga ctaaacaact tgagatgcga cttctaatag agccgactca
     1201 tcgaaaagaa tcagtaaccc cctataaaga aaaaaacaca caatctttct ttagcaaaaa
     1261 cttagataca accagtagaa tagataaaat gatctcatca gtcattacga tggaaaacct
     1321 caagattctt gcaaaagaag cagataccct ctctggaaag gatcgtgaaa agttagtgga
     1381 gtattttaaa acattaccat cagagcagct ggcagaaatc aaggctgaat cagaaacagc
     1441 tcaaaaagcc tgggatgaac aatacgggtt agttcttcgt gataagtgat aaatcgaatc
     1501 ggctttgtgt atttgtcact tgaactgttt ataatcaaat gatattgacc tataatatat
     1561 cactttgatt gtgcgtggca ttaatatgac aaaaataaaa ctggaatcgc cgggtttcat
     1621 ggtacacaaa aagttgaaaa gcatgtccca aagctatgga gtcatgatga ctggtgtccc
     1681 tgctgaggtg ttaggacaaa tgcaggcaga gcgatctatc cccagcatta ataaaacagg
     1741 gaaccttaag caacaaattg caaaggaggt ttcaaaggta tgtcatatga tgactgaacc
     1801 cactcagagt tgtggccaag ccagtaatga tgtgtgtgaa ttgcttttag gaaaaattga
     1861 agcggaaaaa ttccatttca ccaaatatga agcattatca gcagatggag acaatctaaa
     1921 aaatgtttta gaaaatacag ccccatccag cactaaccta ttaatacgat ttgaaattga
     1981 cagagaagac cctcccattg tattggtcaa aacaaaaaac gagaatttca atccggaaac
     2041 cgctgtgaag aataaaattt acctattaga aaataaatta tattttattg acaagatggg
     2101 taatcttttt aaccttggac caggtaaaaa aaaatgtacg cagttattca acgcaattgg
     2161 agactcagca gaatatagtc tttgtgatcc ttttgttctt gaagagcctg aaaaacctga
     2221 ggattttgca ataagtgaga tcgtagatat ctttaacgaa caaaaagaga gattcgattt
     2281 ttggatcggg tcgcattctt ttacaatata tatccctcaa acgctgggtg aatcaccacg
     2341 ccaattctat ccttatcaag cttactttgg ttcacacact ttacaggatt ggtttgtcag
     2401 cgataaagat gaatacctgt cgcgaattgg catcgacaag tatattgaaa aattagctgt
     2461 actgggaaaa acaacaaaca cgaaagaacg ctcggatatt tatgcagaat ttttttcaaa
     2521 gcgaggccgg gaagcatttt tttgcgccca ccttaatgaa aaaagacaac cattacgagt
     2581 aaagttcaaa ataactgaaa ttaaccctga attggcatta aagaatttac aggaaacgca
     2641 agaatttatt gatacccatc caggagaaaa tccatcagat aaagtagaaa attatagaaa
     2701 tagagcaaaa ttggcaatga ccgaacacct ggagagccta ttagacatca agcctgaatc
     2761 aagcccctct ttattttgga aaaatgtcga taagaaagaa caagaaatga ctgacagtag
     2821 caggtataaa aaggggccaa gctaatcaat aaaacaataa aaatcaatta aattataaat
     2881 tgttctaaaa ttgtattaat gggtgtttga aaataacgaa ggagtttgat ttatgatgag
     2941 tcgcgaaaaa gcagctggaa ctttttttaa agattaccag aaaaaaaatg taatgagatt
     3001 gttacaagac tctctcgaaa aaattatcaa cgaatggctg aaaactgatg atgaaagcca
     3061 taccaaactg aaaagtcttc aagaactttc agagatggat attaatgcta cctcatttgc
     3121 tgaacactca ccacttcctg attttgttac gcgtctctgg ctggatccac ataaagcgct
     3181 tgatgccatg gacaaaaaca tttcaaaaaa cgaaatcaga aagctgatta aagaaacggc
     3241 gagggaaata gaacttgtct ttactcatca aaaagcaccc gactactctt aattgaaatg
     3301 aggatggggc tggtatatta attcttcatt cattttggcc atatcattgg ccaaatgatg
     3361 tcttattgga taaaaacata cacagaaaaa caattcgaaa attgactaat atctaaaaac
     3421 ccttctaatt aatttgttat gttaaattaa gtctatggaa ccgggcctcc agaggttcgt
     3481 tcttttccac cacaaatt
//
LOCUS       DACVWI010000257         3470 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.258, whole genome shotgun sequence.
ACCESSION   DACVWI010000257 DACVWI010000000
VERSION     DACVWI010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.258"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            77..1507
                     /locus_tag="JBH85_14020"
     CDS             77..1507
                     /locus_tag="JBH85_14020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 5 protein"
                     /protein_id="HAU0947311.1"
                     /translation="MKIFKFSSWLLLFVFTLDANAYYTSQGSIYDKSGNRVTINGVSW
                     SGFQDTNVFQGLQSNPFYNITMPQSKPRNGLMDLLVHPWSMADSGVNSSTAVEFKTVR
                     LPMQPGVLYDDSGEVDLNKWLSDKTQPEAGNGLFCKTWQSNGQSCEKAVSPKQAFWTV
                     LAEMKKHNINVMIDFHHRYGYGDGMRDGTVYSMVQYEKDLVLLAQEIKQRGLDNVIGI
                     DVFNEPYQLSWFKARNGQVSWITVIATAAKAVHQVNPDLLLFVEGPGGGNDDMDNPTI
                     CVPKANIKEDSGYAHWRDPGQCGNEQEVVAFKGNWGEDFKPLLDKNLAKQNIAQFDVQ
                     KFSNELQQAVPGIDTETLGWLLGDDNMGNNGHLVFSPHVYPKEVAGWETAPGDASNLR
                     FDWSWGFLYKAGYPIVLGEASWKSFEGKNFFTQALMPYLTQSGIGSNNLYFWAIGYLG
                     DTVSAINPNTGELNLDVQQTLKPYFN"
     gene            complement(1638..3059)
                     /locus_tag="JBH85_14025"
     CDS             complement(1638..3059)
                     /locus_tag="JBH85_14025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAU0947312.1"
                     /translation="MKSWSSEKISVLALVLLITGAIDSIRNLPGTALFGSTLIFFFIF
                     SAIIFLIPVALVAAELSSTWSDEEGGIYSWVKHAFGENIAFFAIWLQWINTLVWYPTI
                     LSFIAGTISYLINPELAQNKYYLISVILIIFWSLTLIGLSGLRASATFAGFCAIVGMI
                     VPMGFIILLAFIWLIHGHPIAIDLSLSNLLPQWKNTQSWVSLTAIMTSFLGMELAAVH
                     VRNVNNPQKNFPKAMFFSVILILFTMILGSLAIAFILPKDKISLVDGVMRAFSNFLQV
                     YDLNWLMPVLILLLLLGTLGSMINWIISPAKGLLMAAKHDFLPASLCHVNKHGMPAKI
                     LILQAILVTVLCSGFLLFPTVNAIYWLFTALSTELYMMMYVMMFIAAWHLKSKFSDME
                     RPFAIPGGKPGYYLTCLLGLIGCTVTLWVGFIPPTESINIGGTAHYRMVFSLGIVLML
                     LPAALIYLRKRHITKSKALNAPV"
     gene            complement(3134..3451)
                     /locus_tag="JBH85_14030"
     CDS             complement(3134..3451)
                     /locus_tag="JBH85_14030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HAU0947313.1"
                     /translation="MTRKLRIEEKLISALSPLFLSVEDESMNHHVPQGAETHFKIIAV
                     SNHFNDLTRINRHKFVNQLLKEEFTLGLHALSMHLYTSDEWMTQQQSVLKSPACRDGY
                     KNK"
BASE COUNT         1088 a          648 c          770 g          964 t
ORIGIN      
        1 gtagttttat ggttaaataa tgagctttta accaacttaa caataacttt atggttattt
       61 taatgaggaa aagcgcatga aaatatttaa gtttagcagt tggcttttgc tgttcgtatt
      121 caccctggat gcgaatgcct attatactag tcaaggcagt atctatgaca aaagtgggaa
      181 tagggtgacc atcaatggag tatcctggtc aggatttcag gataccaatg tttttcaggg
      241 attgcagagc aatcctttct ataatatcac catgcctcaa tccaaacctc ggaatggatt
      301 aatggattta ttggttcacc cctggtctat ggcagactct ggtgtaaaca gcagcacagc
      361 ggtagagttc aagaccgtac gtttgcctat gcagccaggt gttctttatg atgacagtgg
      421 ggaagtcgat ctcaacaaat ggctttctga caaaacacaa cctgaagccg gtaatggtct
      481 tttttgcaag acctggcagt ccaatggcca atcgtgtgaa aaagcagtga gtccgaagca
      541 ggctttctgg acggtacttg ctgaaatgaa aaaacataat atcaatgtga tgattgattt
      601 tcaccatcgt tatggttatg gcgatggaat gagggatggc actgtttata gcatggttca
      661 atatgagaag gatttagttc tgcttgctca ggaaatcaaa caacgtggtt tggataatgt
      721 cattggcatt gatgttttta atgaacccta tcaattgagc tggtttaaag ccagaaatgg
      781 tcaggtttcg tggattacag tgatagctac tgctgccaag gcagtgcatc aggtcaatcc
      841 tgatttgtta ctgtttgttg aaggacctgg aggcggaaat gatgatatgg ataatccaac
      901 aatttgtgtg ccaaaagcca atattaaaga ggattcgggc tatgcacact ggcgcgatcc
      961 agggcagtgc ggcaatgaac aggaggttgt agcattcaaa gggaactggg gggaagattt
     1021 taaacccctt ctggataaga atttggctaa acaaaacata gcgcaatttg atgtacaaaa
     1081 atttagtaat gaattgcaac aggctgttcc gggtattgac acagaaacac tcggttggct
     1141 gttgggtgat gataatatgg gaaataatgg ccatctggtt ttctcacctc atgtttaccc
     1201 aaaggaagtg gctggttggg aaacagcccc tggtgatgca agtaatctgc gtttcgattg
     1261 gagttggggt ttcctgtaca aagctgggta tcctattgtt ttaggggaag cctcctggaa
     1321 atcttttgaa ggaaaaaact tttttaccca ggcattgatg ccttatctta cccaaagtgg
     1381 catcgggtcc aataatttat atttctgggc gatagggtat ttaggtgata cggttagtgc
     1441 tatcaatccg aatactggcg aattaaatct cgatgtacaa caaacattga agccctattt
     1501 taattaaatc catctctgat aacccagtac tgtactgatc ttcgacgtcc cgtggcttgt
     1561 ccacgggatc caggagctct ccgctaaaac actgaccctg tggacaagcc acgggttaca
     1621 accatcctat cgatgattta aacaggtgca ttaagcgctt tggatttggt aatgtggcgt
     1681 ttacgcaaat agatcaaggc agcaggtagc agcattaaga cgatgcctaa tgaaaagacc
     1741 atacggtaat gggctgttcc tccgatatta atgctttccg ttggaggaat aaaacctacc
     1801 cataaagtga cagtacaacc tattaatcct aacaggcatg tcaggtaata accgggtttg
     1861 cctcctggaa tagcaaaagg tctttccatg tctgagaatt tactcttcaa atgccaggct
     1921 gcaataaaca tcatcacata catcatcata tacagctctg tactaagagc agtaaacaac
     1981 caataaatag cattcactgt agggaataag agaaagccgc tacataatac tgtcaccaga
     2041 atggcttgca gtatcaaaat ttttgctggc atgccatgtt tattcacatg acatagcgaa
     2101 gcaggcagaa aatcatgttt ggctgccatc agcaggccct tggctggaga aataatccag
     2161 ttgatcatgc tgcctaaggt acccagcaat aacaagagta ttaatacagg cattagccaa
     2221 ttcaaatcat aaacttgcaa gaaattacta aatgccctca taaccccatc taccaaactg
     2281 attttgtctt taggcagaat gaaagcaatg gccagtgagc ctaaaatcat ggtgaacagg
     2341 atgagaatga ccgaaaaaaa catcgctttg ggaaaattct tctgcgggtt attgacatta
     2401 cgcacgtgaa ctgcagcaag ctccatcccg agaaaagaag tcataatcgc tgttagagaa
     2461 acccaggatt gtgtgttttt ccattgcggt agcaaattgg agaggctcag atcaatggca
     2521 atagggtggc catgaattaa ccaaataaaa gccagaagga tgataaatcc cataggcact
     2581 atcattccaa ctattgcaca gaagccagca aaggtggcag aagcacgcag tcctgataag
     2641 cctatcaaag ttaatgacca gaaaataatc agaataacgc tgataagata gtatttgttt
     2701 tgtgcaagtt ctggattaat taaataagag attgtgcctg ctataaaaga caaaatagtc
     2761 ggataccata ccagagtatt tatccattgc agccaaatgg cgaaaaaggc gatgttttca
     2821 ccaaaggcat gcttgaccca actgtaaatg ccaccttcct cgtctgacca ggttgaggaa
     2881 agttcagcag cgactaaagc aaccgggatc aaaaagataa ttgctgaaaa aataaagaaa
     2941 aaaatcaaag tagatccaaa aagtgctgtg cctggcaaat ttctaatgct gtcaattgct
     3001 ccggtaatga gcagcactaa agcaagaacg gatatttttt cagaggacca tgatttcatt
     3061 gatttttcta tttgataaaa agatagacat tataaaataa atcaagcttg gaggtgaact
     3121 tttttcatta aaattatttg tttttatagc catctctgca agcaggtgat ttgagtaccg
     3181 attgctgttg agtcatccat tcatcagaag tatataaatg catgcttaat gcatgcagcc
     3241 ccagagtaaa ttcttcttta agaagctgat taacgaattt atgacgatta atacgagtca
     3301 gatcattaaa atgatttgaa acggcgatta ttttaaaatg tgtttcagcg ccttgaggaa
     3361 cgtgatggtt catggactcg tcttcaacac ttaaaaagag gggggataat gcggagatta
     3421 gtttttcttc tatgcggagt ttacgcgtca tgatttgctc gactctgttt
//
LOCUS       DACVWI010000258         3468 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.259, whole genome shotgun sequence.
ACCESSION   DACVWI010000258 DACVWI010000000
VERSION     DACVWI010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.259"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(186..923)
                     /gene="hda"
                     /locus_tag="JBH85_14035"
     CDS             complement(186..923)
                     /gene="hda"
                     /locus_tag="JBH85_14035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HAU0947314.1"
                     /translation="MDLEQKSLVPQRIVKMNKQLALAIKLNDEATLDDFNWGNNTLLQ
                     QQLIEMLSFKADRLLYLWGPKGSGKSHLLQACCQAINLTQSAIYLPLAFLKEWGPQSI
                     EGLEDQTLICIDDINTIANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLA
                     DLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYE
                     ILNQLDDASWEAHRKITIPFVKNILKI"
     gene            complement(881..1435)
                     /locus_tag="JBH85_14040"
     CDS             complement(881..1435)
                     /locus_tag="JBH85_14040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HAU0947315.1"
                     /translation="MILKHIPNTLTLLRLVLIAPFLMYLFHHEYVKAFYIFIAAGLTD
                     GLDGWLARHFQWQSFFGSFVDPLADKLLVASSFISLALLNSLPWWLVLLVFLRDFTIS
                     MGVLAWYYFIQRKLDFEPSRLSKLNTGFQLTLVTLCLFELAYFRFPYDLVDILIYLTA
                     FTTVTSYLDYVWTWSRKAWSPKES"
     gene            complement(1350..1574)
                     /locus_tag="JBH85_14045"
     CDS             complement(1350..1574)
                     /locus_tag="JBH85_14045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014842806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947316.1"
                     /translation="MTETMVLYKLIHIRHLKHSNNRVLLAQYIPSSAINKKRGGTNFR
                     ITDDTKTYSQYLNIAKISFNSSFSNVFISS"
     gene            complement(1695..3422)
                     /locus_tag="JBH85_14050"
     CDS             complement(1695..3422)
                     /locus_tag="JBH85_14050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore biosynthesis protein"
                     /protein_id="HAU0947317.1"
                     /translation="MALAYGNFHELSHQLRFLLFEIGIGLPQNSVDYFITLAHKNTLK
                     RLQHASIKEGLIQSAIASHHIHDFIDQLQIKLKNSMPESKFFQWRKIREALDESIANE
                     ALAYAYRQNWNTQLRNEAMHYKSLWTWINNELSPYQTLLFLEQWGSLRHPYHPAFSAK
                     TGFTRREVLQNSPEFQAKVSVHWCALNKTKIQSISSKIDYANQISQEFPKEYFYWREK
                     LLFSHINPDDYYPIPVHPWQWRNQLQMAFASLIDNKSLILLPHHQTLIPSLSPDIMMP
                     TQSTQCTLKLATTLSTSMAGKLDNSDDMVLLSRWIDSLLAKTNYYQNTLFICKNLESM
                     STYDQTLSECNRVKLLFGLYQNPLHKIRQDQRAVPLPALLTDSPCSNTPLLIEIIKAS
                     ELHPTTYFTEYCYKMLFGQLHLLLKYGLALEVEQHNILVIFDDNKPQGIIIKEPNNLK
                     LCNHELFKNVQKPNAPDSLSIYTKDLNQVRTLFIQGTLKNHLHHLIGCLRNEYQISEK
                     TLWGLTRQVMQTVFKDLSKDIDPRILSWQQHLLLHDNWEHQPELLLSLHSKINRNITI
                     KEYNPLSEI"
BASE COUNT         1063 a          569 c          689 g         1147 t
ORIGIN      
        1 gcaactcttt aaatatagac tcgttttcat ttttgtcaaa ttgaagaata acaattgtcg
       61 taactccatg aaacggtcat ctcagtaact ctgtggatag gcaatatatg gggaatgata
      121 aaagaattac ggtggttcct catcaaggat cttaaataaa tttataaggg agagtcaata
      181 acctcttata ttttcaaaat atttttaaca aaaggtatgg tgattttacg atgagcctcc
      241 caagatgcat catctagctg gttgaggatc tcatataaat catgcatgtt tcgagagcaa
      301 cggtttaata aaaaatgtcc gacactctca ggaagttcaa atccgcgttt tgctgcgcgc
      361 attttgagtg tgtttatttt ttcgtcatcg tttaattcat tcaactgaat aactaatccc
      421 caacttagtc tggagcgtaa atccgcaagt ttaatgtcac attttattgg tggttgatta
      481 cctgatataa ttaaaagaga acgttcggag tccttaatct tattatataa atggaataaa
      541 gcttcttccc aggccgaatc gttagcgatg gtattaatat catcaataca aattaaagtt
      601 tgatcttcta atccttcaat gctttgtggt ccccattctt ttaaaaaagc taaaggaagg
      661 taaatggctg attgggttaa attaatggct tggcaacaag cttgcagtaa atgtgatttg
      721 ccacttcctt tagggcccca aagatagagc aacctgtctg ccttaaaaga aagcatttca
      781 attaattgct gctgcaacaa ggtattatta ccccaattga agtcgtccag ggttgcttca
      841 tcattcaatt ttattgccag ggccagctgt ttattcattt ttacgattct ttgggggacc
      901 aggcttttct gctccaggtc caaacataat caaggtagga agtaacggtg gtaaaggcag
      961 ttaaatagat gagtatatca actaaatcat aggggaatct aaagtaagct aattcaaata
     1021 aacataaagt gactaaagtt aactggaagc cggtattgag tttactgagt cgagagggct
     1081 caaaatccag tttgcgctgt ataaagtaat accaggctaa tactcccatt gaaatagtga
     1141 agtctcttaa aaaaacaaga agcactaacc accagggcaa ggagtttaag agagctaaag
     1201 aaatgaagct ggaggcaact aacaatttat ctgcaagagg gtcaacaaat gagccaaaaa
     1261 aactttgcca ttgaaaatgc ctggctaacc aaccatccaa accatcagtt aatcctgcgg
     1321 cgataaatat ataaaaggcc ttaacgtatt catgatgaaa taaatacatt agaaaaggag
     1381 ctattaaaac taatcttagc aatgttaagg tattgggaat atgttttagt atcatctgtt
     1441 atacgaaaat tagttcctcc tcttttttta tttatcgctg aggagggaat atattgtgcc
     1501 aacaatactc tattatttga gtgtttcaaa tggcgtatgt gaattagttt atacaatacc
     1561 attgtctctg tcaccttatt gagaaatcaa ttgggattta ttgactcata gtatccacat
     1621 cccggcctcg agaagttctc atattttaag attggaacaa gagcgcatgg ggtttttcgt
     1681 cagtccagta gagcttagat ctctgataat gggttgtatt cctttattgt aatatttcga
     1741 ttgattttgg aatgcagact taataacaat tcaggttgat gctcccagtt atcatgaagc
     1801 aatagatgtt gttgccaact tagaatacgc ggatcaatgt ctttggataa gtctttaaat
     1861 acagtttgca tgacttggcg cgttaatccc cataaggttt tttcagaaat ctgatactca
     1921 ttacgtaaac agccaatcaa gtgatgtaga tgatttttta atgttccctg gatgaaaagg
     1981 gttctaacct gattaagatc ttttgtatag atggatagag agtctggagc gttgggtttt
     2041 tgaacgtttt taaacaattc atgattgcat agcttaaggt tgtttggctc ttttataatt
     2101 atcccctgag gtttattgtc atcgaagatg actaaaatat tgtgttgctc cacttctagt
     2161 gctaatccat attttagcaa tagatgcaat tgtccaaata acatcttata acaatattca
     2221 gtgaaataag tcgttgggtg tagttcgcta gctttaataa tttcaatgag taatggtgta
     2281 ttgctacaag gtgaatcagt taatagggca ggtaatggaa ctgctctttg atcctgtctt
     2341 attttgtgga gtgggttttg atataagcca aacaataatt ttactcgatt gcattcagag
     2401 agagtttgat cataggtgct catgctctcc aggtttttac atataaacaa ggtattttgg
     2461 taatagtttg tttttgctaa cagggaatcg atccatctgc taagcaatac catgtcatca
     2521 gaattatcga gttttccagc cattgaggtg cttaaagtgg tagccagttt aagtgtacat
     2581 tgagtggatt gtgttggcat cataatatca ggtgataaag aaggtattag tgtttggtga
     2641 tgaggtaaca agatgaggga tttattatca attaaagatg caaacgccat ttgtaattga
     2701 ttcctccact gccaagggtg aacaggaatt ggataataat catcagggtt gatgtggcta
     2761 aataacaatt tttcacgcca ataaaaatat tctttgggaa attcttgaga aatttggttg
     2821 gcataatcaa tttttgagct tattgactga atttttgttt tatttaatgc acaccaatgt
     2881 acactgactt tggcctggaa ttcgggagag ttttggagta cttctcttcg cgtaaaccct
     2941 gtttttgcgc tgaatgccgg gtgataggga tgcctcaaac tgccccactg ttccagaaat
     3001 aataacgttt gatacggaga tagttcatta tttatccatg tccacagact cttgtagtgc
     3061 atggcttcat ttcttaattg ggtgttccag ttttgcctgt aggcataagc caaagcctca
     3121 ttagcaatcg attcatctaa tgcttccctg atttttcgcc attgaaaaaa cttgctttcc
     3181 ggcattgaat ttttcagttt tatctgcaat tggtcaatga aatcatggat atggtgactt
     3241 gcaatggctg attgaattaa tccttcctta atggaggcat gctgtaaacg cttcagggta
     3301 tttttatggg ctaaggtaat aaaataatcc acactatttt gtggtagtcc tatgccaatt
     3361 tcaaatagta aaaagcgtaa ttgatggctg agttcatgaa aattaccgta cgccagggcc
     3421 attattatct cctgaaggat tattttgtta taaattaaat ataaatga
//
LOCUS       DACVWI010000259         3439 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.260, whole genome shotgun sequence.
ACCESSION   DACVWI010000259 DACVWI010000000
VERSION     DACVWI010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3439
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.260"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..943)
                     /locus_tag="JBH85_14055"
     CDS             complement(<1..943)
                     /locus_tag="JBH85_14055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HAU0947318.1"
                     /translation="MMIRNSMKSHTELLSWNLLQKEADRVRLNSDSLTCVVPDSNNYE
                     SSKQINCIEYDYSRQRVNRTIIDLLIDLANEVKLQEKIDNLINGKKINISENRPALHT
                     ALRDLGNKSIMIDGLDIMSAVINTREKIKVISNQIREKKWLGHSGLPITDIVNIGIGG
                     SDLGPRVCINALSNYISKEFNYHFISDVDPASFNDVIAKINPQTTLFIVSSKSFTTKE
                     TLLNARKAFALYEDTASIDQHFIAVTAHPERAYQMGIKTVLPIWDWVGGRFSFCSAVN
                     LITAIAIGYEQFVELLAGAHDIDTHVQFTDFKNNIPVL"
     gene            complement(979..2058)
                     /gene="rfbB"
                     /locus_tag="JBH85_14060"
     CDS             complement(979..2058)
                     /gene="rfbB"
                     /locus_tag="JBH85_14060"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HAU0947319.1"
                     /translation="MICQMLSTILQKSKNLTMKNQMNNLLVTGAAGFIGSNFVKFMND
                     KYPEIKIISLDKLTYAGNKANLSEMAECKNHLFVQGDILDKSLVLSLLREYEIDTLVH
                     FAAESHVDNSIDNPQIFLETNVIGTFTLLEAARIYWLNERQWDKSKCRFHHVSTDEVY
                     GSLEREEPAFTEKNSYQPNSPYSASKASSDHIVRAYYHTYGLPVTTSNCSNNYGPNQH
                     KEKLIPKVVFACVNQLPITVYGNGSNIRDWLYVMDHCEAIDTIIQKGALGEVYNIGGN
                     NELDNLSLIKMICQMMDDLKPMEKPYHSLITFVEDRKGHDKRYAIDNSKIQKELGWVP
                     QGDFVHKLSNTVHHYLTRYEREINI"
     gene            complement(2018..2902)
                     /gene="rfbD"
                     /locus_tag="JBH85_14065"
     CDS             complement(2018..2902)
                     /gene="rfbD"
                     /locus_tag="JBH85_14065"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HAU0947320.1"
                     /translation="MKILVTGANGQVGTEIIKRFSSSEHEVYACTRDILDCSKLERVH
                     DVLSEIKPDLIINAAAYTAVDKAEDEPDLAHIVNAEFVCRLVNYCTLKNVPLIHLSTD
                     YVFDGEKEGAYHETDIPHPVSTYGRTKWEGEQAILSQLKKYIILRVSWVFGEQGKNFV
                     KTILNLASSRKELNIVSDQSGRPTSARDIARVLFEIVQKIRHSSFDYWGLYHYAGQGV
                     TNWHEFANVFLNMAKEKQLLLTLTDLNPIKSQEYPTRATRPKNSVLNTTKIETILGIK
                     SCSWKNDLPDVIDHFTKK"
     gene            complement(2903..>3439)
                     /gene="rfbC"
                     /locus_tag="JBH85_14070"
     CDS             complement(2903..>3439)
                     /gene="rfbC"
                     /locus_tag="JBH85_14070"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HAU0947321.1"
                     /translation="ELKIIEPKIYGDERGFFYESFQAKRYEELLGITDRFVQDNFSRS
                     QKGVLRGLHYQSQQTQGKLVSVLAGEVFDVAVDIRLGSPTFGQWVGVILSGENKRQFW
                     IPKGFAHGFYVLSAMADFAYKCTDYYHPESEFSIHYLDPQLAIDWPLGEQVQLSPKDA
                     AAKLLNLIDAELLPRYQA"
BASE COUNT         1066 a          688 c          548 g         1137 t
ORIGIN      
        1 ttagcacagg aatattattt ttaaaatcag taaattggac atgagtatcg atatcatggg
       61 caccagccag caattcaaca aattgttcat aaccaattgc aatcgcagta attaaattaa
      121 ctgcggaaca aaaagaaaat cgaccaccaa cccaatccca aatcggtaaa acagttttaa
      181 tacccatttg ataagctctt tccggatgtg cggttacagc tataaaatgt tgatcgatag
      241 aggccgtatc ctcatacaat gcaaaagctt ttctggcatt taatagagtt tcttttgtag
      301 taaatgattt ggaagaaaca ataaataagg tggtttgcgg attaattttt gcaataacat
      361 cgttaaaact ggccggatca acatctgaga taaaatgata attaaattct ttggaaatat
      421 aattagacag ggcattgatg catacacgag gacctaaatc cgagccgcca atacctatgt
      481 ttacaatatc agttattggt agacctgaat ggcccagcca cttcttttct ctgatctgat
      541 tggatataac tttaattttt tcacgagtat ttataactgc ggacataata tccagtccat
      601 caatcattat cgatttatta cctaagtccc taagtgcagt atgtagtgca ggcctgtttt
      661 cgctgatatt gattttttta ccattgatta agttatcaat tttttcttgt aatttgactt
      721 cattagccaa atcgataagc aaatcaatga tggttctgtt tactctctgc ctggaatagt
      781 cgtactcaat acaattgatc tgtttactgg attcataatt gttggaatcc ggaacaacgc
      841 atgttagaga atctgaattt agacgcactc tatccgcttc tttttgaagc aaattccatg
      901 acaataattc tgtgtgagac ttcatgctat ttctaatcat caaaataaag tctatgttac
      961 ctgattattt tcaatttatt aaatattaat ttcgcgctca taccgtgtta agtaatgatg
     1021 aactgtattt gataatttat gaacaaaatc accttgtgga acccaaccca attccttttg
     1081 aattttacta ttgtctatgg cgtatcgttt gtcatgacct tttctatctt caacaaaagt
     1141 aatcaatgaa tgatatggtt tttccatagg ttttaaatca tccatcatct gacaaatcat
     1201 ttttatcaaa cttaaattat ccagttcgtt attaccacct atattataaa cttcccctaa
     1261 tgctcctttt tgaataatgg tatcaattgc ttcgcaatga tccatgacat acaaccaatc
     1321 gcgaatattt gatccgttgc cataaacggt gatgggcagc tgattgacac aagcgaatac
     1381 taccttagga atcaacttct ctttatgttg attaggcccg taattattcg aacaattcga
     1441 agtggtaaca ggtaatccat aggtatgata ataagctctg actatatgat cagaacttgc
     1501 cttggacgct gaataagggg aattgggttg atatgaattt ttttcagtga acgccggctc
     1561 ttctctttct aatgaaccat acacttcatc agtggataca tgatgaaacc gacactttga
     1621 tttatcccat tgcctttcat tcaaccaata aatccttgcc gcctctaaca gagtaaaagt
     1681 tccaattaca ttggtttcaa gaaatatttg cggattatca atggaattat ccacatggga
     1741 ttcggctgca aaatggacaa gcgtatctat ttcatattcc cttagtaagg ataacaccag
     1801 acttttgtcc aatatgtctc cttgcacaaa aaggtgattt ttacattctg ccatttcact
     1861 caaattggct ttatttcctg cataggttaa tttatccaaa ctgattattt tgatctccgg
     1921 gtatttatcg ttcataaatt taacaaaatt acttcctata aagcccgcag ctccagttac
     1981 caaaaggttg ttcatctgat ttttcatagt gagattctta cttttttgta aaatggtcga
     2041 taacatctgg caaatcattt ttccaactac agctttttat acccaatatt gtttctatct
     2101 ttgttgtatt gagtaccgaa tttttaggcc ttgttgccct agtaggatat tcttgtgact
     2161 taattggatt taaatcggtt aaagtcaaga gaagctgttt ctcttttgcc atattaagaa
     2221 atacgtttgc aaattcatgc caattggtaa caccctgccc tgcataatgg taaagccccc
     2281 aatagtcaaa ggaagaatgt ctgattttct gtactatttc aaatagtact cttgctatat
     2341 cgcgagctga agtaggcctt cccgattgat ctgaaacaat attcaattct tttctgctgg
     2401 aagccaaatt taaaatcgtt tttacaaaat ttttcccttg ttcaccaaat acccagctaa
     2461 ctcgcaaaat aatatacttt ttaagttggg ataaaatagc ctgttctcct tcccatttcg
     2521 tgcgcccata ggtacttact ggatgcggaa tatcggtttc atgataggct ccctcctttt
     2581 ctccatcaaa tacataatca gttgaaagat ggatcaaggg gacgtttttc aaggtacaat
     2641 aattcaccag gcgacagaca aattcggcgt tcacaatatg agccaaatca ggttcatcct
     2701 ctgccttatc tacagccgta taggctgctg cattaatgat aagatccggc ttgatttccg
     2761 ataacacatc atgaacccgt tcgagtttgg aacaatctag aatatctctg gtacaagcat
     2821 atacttcatg ctcagaggaa gaaaatcgct tgataatctc ggtaccaact tgcccattag
     2881 cacctgtaac caatattttc atttaggctt gatatctcgg taaaagttca gcatctatta
     2941 aatttaaaag cttggctgca gcatcttttg gagacaattg aacctgctct cctaatggcc
     3001 aatcaattgc taattgcgga tcaagataat gaatggaaaa ctcactttca ggatgataat
     3061 agtcagtaca tttataagca aaatcagcca tagcactcaa aacataaaac ccatgggcaa
     3121 atcctttagg aatccaaaat tgccttttgt tttctccgga aagaatcact ccaacccatt
     3181 gcccaaaagt aggggagcct aacctaatat ccacggcaac atcaaacact tcaccagcta
     3241 aaactgaaac cagttttccc tgagtttgtt gactttgata atgcaaacct cttagtacac
     3301 ctttttgtga tcttgaaaaa ttatcctgta caaaacgatc agttattcct aataactctt
     3361 catatcgttt agcttgaaaa gattcataaa aaaaccccct ttcatcacca taaatctttg
     3421 gttcgataat tttaagttc
//
LOCUS       DACVWI010000260         3406 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.261, whole genome shotgun sequence.
ACCESSION   DACVWI010000260 DACVWI010000000
VERSION     DACVWI010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3406
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.261"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..103)
                     /locus_tag="JBH85_14075"
     CDS             complement(<1..103)
                     /locus_tag="JBH85_14075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAU0947322.1"
                     /translation="MKQEDLMEVERIKNEVKLFLLNSFRIKDIGYSDN"
     gene            243..1289
                     /locus_tag="JBH85_14080"
     CDS             243..1289
                     /locus_tag="JBH85_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HAU0947323.1"
                     /translation="MLYLLIQSELIRTSMKQMAIVLQGGGALGAYELGVLKYLYASAN
                     FSPNIISGVSIGAINAAALIGAKDEPIQTLEAIWEELTVFSAQIFPEMTESFLALLGN
                     AAFYHLRTDYWSMPYWTSFYTTKPLEQLLLKYIDFDKLNNSPIHLILTATNVTTGKIT
                     VFENQGNNRTEITPLHVLASGSLPPGFPMTLIGDIYYWDGGLFSNTPLSPVMEKLNPD
                     PNVEKQIIVINLFPSQGKIPTNMPEVFDRVFEIIFSNKIRFNTELTEKINEYVETIQE
                     IEKIVPENSFIRQLPGYKRLLNYKYIQDIIYIESSDEENATASFDFSRKAIQRRIDSG
                     YKDAKNNFQLNQLI"
     gene            complement(1470..2453)
                     /locus_tag="JBH85_14085"
     CDS             complement(1470..2453)
                     /locus_tag="JBH85_14085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-nucleotide phosphodiesterase"
                     /protein_id="HAU0947324.1"
                     /translation="MRRLLITILIFLLSNAGCCAPVFEIIPLGVYGGLKDGNLSAYLI
                     KAIESKNYTALDGGTLVRGLEVAVDRQSLPSKKVDDLLQKHIPAYLISHAHLDHVMGL
                     VMAQPELREKQTIMAREETMQALQDNIFNWSVWGNFGDSGAIPHLNFQHYQTLPLLQW
                     LAIPDTDLHVKVFPLSHSGMASSAFLIRYKTEYALYFGDTGADRIEKSTNMENIWKEI
                     APLIRNKQLHAIMLECSFLNSQPDDKLFGHLKPNLFMSELRHLASIVDPFDSRNSLRG
                     LPVVVTHIKPKLADFSNTNEDTEKQVINELSQENDIGVELIKPEQGITLSL"
     gene            complement(2558..3229)
                     /locus_tag="JBH85_14090"
     CDS             complement(2558..3229)
                     /locus_tag="JBH85_14090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947325.1"
                     /translation="MLAPEISLLDHLPGYIGWKDLNRNYLGANKALLELKGFRDIEEL
                     AGKTDEELSPWATEENKMFQQQDLRVLNGEKIATVHFDSKTSEVFLLEKRPLTDQDQK
                     VTGLIYYCHPYPKNEIFRVLRLFDDKWHLSPHYYTLNDNKNIYGLTDREHECVFLLIR
                     GKSAKEIGALLSLSKRTIESYIENIKNKMDCRNKAEILVKAVLNGYHNYFPARLQQAA
                     IIRSL"
BASE COUNT         1055 a          676 c          605 g         1070 t
ORIGIN      
        1 tattatccga ataaccaata tccttaattc gaaaagaatt gagtaaaaat agttttactt
       61 catttttaat gcgttcaact tccatcaaat cttcctgttt cataagaata gtcttattca
      121 gatatgggta atggaattat tcataataat attttttcca ggaaagtcaa aatgcttaac
      181 aaatacttag acaggaagcg caacagtggg aaatgacttg acatcatttt cattatggtt
      241 acctgctata cttgctgata cagagcgaat tgataaggac atccatgaag caaatggcaa
      301 ttgtacttca gggaggcggg gcactgggag cttatgaatt gggcgtatta aaatacctct
      361 atgcatcagc caatttttcg ccaaacatta tttcaggggt ttctattggt gctatcaatg
      421 cagcggcact gattggagcg aaagatgagc ctatccagac tctggaagca atatgggaag
      481 aactgactgt tttttctgcc cagatattcc ctgaaatgac ggaatctttt ctcgcactct
      541 taggcaatgc ggctttttat catttgcgaa ctgattactg gtcaatgcct tattggacca
      601 gtttttatac cacgaagccc cttgaacaat tattgttaaa atacattgat tttgacaaac
      661 tgaataacag cccaatccat ttaattctta cagcaactaa tgttacaacc ggtaaaatca
      721 ccgttttcga gaatcaaggt aataaccgta cagaaatcac gcctttgcat gtattggcca
      781 gcggtagttt gcctcctggc tttcccatga cactcattgg agatatttat tactgggatg
      841 ggggtttatt ttccaatacg ccgctatctc cggttatgga aaaacttaat cccgatccaa
      901 acgttgaaaa gcaaattatt gtgattaatc ttttccccag ccagggaaaa ataccgacta
      961 atatgcctga agtttttgat agagtatttg aaatcatttt ttccaataaa atccgtttta
     1021 ataccgaatt aactgaaaaa atcaatgagt atgttgaaac aatacaggaa attgaaaaaa
     1081 tagttcccga aaatagcttt ataagacaac tcccaggcta taaacgactg cttaattaca
     1141 aatatattca ggatataatt tatatagaaa gctcagatga agaaaatgca accgcttctt
     1201 ttgatttttc ccgcaaagcg atacaaagac gtattgactc aggatacaaa gatgccaaaa
     1261 ataattttca gttgaatcag ttaatttaaa ctctgctgca tccactatta cattgctgct
     1321 gtcatagcat gcaaagtcgc aggagtagca gcttctctat gctaaggttt tttattctgg
     1381 ttcggacttt tcgcaacagc ccctgataca caaataccat aaatgattta ttagggttgg
     1441 ttctggcggc tgttgtgact cttcatcaat cataaactta aggttatacc ttgttcaggt
     1501 ttaattaatt cgacaccaat atcattttcc tgggataatt cgtttatgac ctgtttttct
     1561 gtatcttcat tagtatttga aaagtcagct aatttgggtt tgatgtgtgt aacaacaacg
     1621 ggtaaacctc gtaatgagtt tcttgagtcg aaaggatcaa caatcgatgc caagtgccgc
     1681 aactctgaca taaacaagtt tggttttaaa tggccaaata atttgtcatc tggttgtgaa
     1741 tttaaaaatg agcactccag catgatggca tgaagctgct tatttcttat cagtggggca
     1801 atttctttcc aaatattctc catatttgtc gacttttcaa tgcgatcagc accagtatca
     1861 ccaaaataga gggcatattc ggttttataa cgtattaaaa aagcgcttga tgccattccg
     1921 ctatggctca aaggaaacac tttaacgtgc aaatctgtat caggaatagc aagccactgg
     1981 agtaatggca gagtttgata atgctgaaaa ttcaaatgag gaattgctcc gctatctcca
     2041 aaattccccc agacagacca attaaaaata ttgtcctgca atgcctgcat tgtttcttca
     2101 cgcgccataa tggtttgctt ttctcgcaat tcgggttgcg ccatcacaag ccccataaca
     2161 tgatcaagat gggcatgaga aataaggtaa gctggaatat gtttttgcag caaatcatca
     2221 acctttttac taggcaggga ttgtctatcg actgcgactt caagcccacg caccaaagtg
     2281 cccccatcaa gagccgtata atttttgctc tcgatggctt ttattaaata agctgataaa
     2341 tttccatctt tcaaaccacc atagactcca agaggaataa tttcaaagac aggcgcacaa
     2401 catcctgcat tagataataa aaaaataaga atggtaatca ataaacggcg catgaggatt
     2461 tcctttcaaa tgattcaagt aagtttgtaa aataatacag tattcagcct tgcttaaatt
     2521 accgtattta tacggtagaa gttcagcatc ataattatta aagtgacctt ataatagccg
     2581 cttgctgtaa tcttgcaggg aagtaattgt gataaccatt taacactgct tttaccagta
     2641 tctccgcttt attcctgcaa tccattttat tcttaatatt ttctatgtac gactctatag
     2701 tccgtttgga tagagaaagc aaagccccaa tttcttttgc ggattttcct cttattaata
     2761 aaaacacaca ttcatgctca cggtctgtta atccatagat atttttattg tcattcagtg
     2821 tataataatg gggacttaaa tgccatttat catcaaacag ccttaaaact ctgaatattt
     2881 cattcttggg ataaggatgg caataataaa tcaatcccgt caccttctgg tcctgatctg
     2941 ttaaagggcg tttttccaac aggaaaactt cactagtctt tgaatcgaaa tgtactgttg
     3001 ctattttttc gccgtttaat acgcgcaaat cttgctgctg gaacatttta ttctcttcag
     3061 tagcccaagg cgacaactcc tcatctgttt taccagccag ctcttctata tcacgaaatc
     3121 ctttcaattc cagcagcgct ttgtttgcac ctaaataatt gcggtttaaa tccttccagc
     3181 caatatagcc tggaagatga tccagcaagg atatttcagg ggccaacatt agtcctatcc
     3241 tccaatgaat gctaattttg cgcgcggatt attaaggggt taatgtcgtt attttaaatg
     3301 gtagcctgcc caaatcaact gcctgtataa caaaagagag tctaatcaat atttggcttt
     3361 aaaggcaggc actctcaggc aatgaggaag accctattat gtcgca
//
LOCUS       DACVWI010000261         3365 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.262, whole genome shotgun sequence.
ACCESSION   DACVWI010000261 DACVWI010000000
VERSION     DACVWI010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.262"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..503
                     /locus_tag="JBH85_14095"
     CDS             <1..503
                     /locus_tag="JBH85_14095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lpg1124 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947326.1"
                     /translation="SKIIFNFQQLFNVERSTLLSHHKFNPKISNNREFLQDLEARYDR
                     LNQAIENNEPYPFLYGDVCLLKEYLQVILGYYQDQLKAHQPVANSYLKRITKSHKFST
                     LMSDISEEEHPELGKKDSEILIKYTINFCAKKIMMEDLKTISDLVIKPFLFDHKDEEG
                     FSYCNP"
     gene            739..1500
                     /locus_tag="JBH85_14100"
     CDS             739..1500
                     /locus_tag="JBH85_14100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HAU0947327.1"
                     /translation="MKRIVFILLFISNVLVHSESLKVGVLQFAPPFSSISDKANHYYG
                     FVVALMNIICNRLQEKCEYIPIPKEGELKGLDKGVYHIVFSSTPITTSLPANYRYSLP
                     YLPSDGQFLTLKNNSIDTLNDINFKKVGFFKINFQQSPLLKKYETTNTLIEYTDPAEL
                     VNALTTKKIDAILINYQASRFIVNNLNPTEDDQLKLIGDKIPIGSGYGIIALKNQSAL
                     IDKINHILLEMEKDGSYLRIYNEYFGANPAYNLHH"
     gene            complement(1626..2954)
                     /locus_tag="JBH85_14105"
     CDS             complement(1626..2954)
                     /locus_tag="JBH85_14105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HAU0947328.1"
                     /translation="MIKTFIDKKIQLLFSCLIFFIFSTHAKSFETPDVWDVLRSEFKM
                     NHEAYRPEVQDQIRWLLDHPGFVTKACKQAEPYLYHVTREIQRRNLPGELALLPMIES
                     AYDPFAYSKVGAAGLWQIMPVTGNQLGLIQDWWFDGRRSINHSTDAALTHLMHLNKVF
                     NGSWILSIAAYDAGEGAIGRAVKANNTNGGSVSFWNLDVPKETQIYVPRFLALAEIMS
                     NPRAYKINLPATPFRPYFEEVNIGSQIDLNHAASLAGISVSELTKLNPGYNRWATAPY
                     KPFTLLIPIAKVTQFYFNLSHSPVDKRVSWRKHLVLPSDSLQSIARKYHTTVSLIKKL
                     NRLSEHSIRPNQILLIPSAKSTPALPFHEISKSKFLSQTPTKGKVYRVIHIVQANETY
                     NTLERLYKVTAQDIMKWNHIGSGEALVKGRQLIIWKKSSNLEWNRTFKKT"
     gene            3165..3346
                     /locus_tag="JBH85_14110"
                     /pseudo
     CDS             3165..3346
                     /locus_tag="JBH85_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946232.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1071 a          656 c          583 g         1055 t
ORIGIN      
        1 tttcaaagat tatctttaat tttcaacaat tgtttaatgt tgaaagaagt actcttcttt
       61 ctcatcacaa gttcaacccc aaaataagta acaatcgaga attccttcaa gatctggaag
      121 ctcgttatga tcgcctcaat caggcaatag aaaataatga accttaccct tttttatacg
      181 gcgatgtatg tttattgaaa gaatacctcc aagtcattct aggctattac caggatcagc
      241 ttaaagcaca tcagccagta gcaaacagct atttaaaacg gataactaaa agccacaaat
      301 tttcaactct aatgtctgat atttcagaag aggagcatcc tgagcttggc aaaaaagatt
      361 cggaaatttt aatcaagtac accattaact tctgtgcaaa aaaaatcatg atggaagatc
      421 taaaaacaat tagtgacctt gtaataaaac catttttatt tgatcacaaa gacgaagaag
      481 gtttttctta ttgcaatcca taagctggag aatagattag agggcagtga cctggattta
      541 acgatatctc taaatcggat actgcccaac cccttccaag ccctaccttg aaaagcctct
      601 tgattgcgca gctaacaata ttttatttca ctaaaattga ctctgaaaaa ccgatccaaa
      661 atgaaaacta ttgccctata attaaaaaag attacttctc ttattaaaaa tggaccagat
      721 taagaagaga cccaatttat gaaacggata gtatttatac tgttgtttat aagcaacgtt
      781 ctagttcaca gtgaatcact caaggtgggt gtcttacaat ttgctcctcc tttctcatct
      841 atatcagaca aagcaaatca ctattatggt ttcgttgttg ccctcatgaa tataatatgc
      901 aaccgtttgc aagaaaaatg cgaatacatc cctattccta aagaaggcga gttaaaaggt
      961 ctggataaag gtgtttatca tattgttttt agctcaaccc ctatcacgac atcattacct
     1021 gctaactatc ggtacagctt gccctactta cccagtgacg gtcaatttct gacattaaaa
     1081 aacaactcga ttgatacctt gaacgatatc aattttaaaa aagttggttt ctttaagatt
     1141 aattttcagc aatctcctct tttaaaaaaa tacgaaacca ccaatacgct tatagagtac
     1201 acagatccgg cagaattagt taatgcacta acaaccaaaa aaattgatgc gattttaatc
     1261 aattatcaag cgtcacgatt catcgtgaat aatctcaacc ccactgaaga cgatcaatta
     1321 aaattgattg gcgataaaat accgatagga agcggatatg ggatcatagc ccttaaaaac
     1381 caatcggcat tgattgataa aattaatcac attttgctgg aaatggaaaa agatggttcc
     1441 tacctccgta tctacaacga atattttggt gcaaatccag catataatct tcatcattag
     1501 taggttagta tgaaaattgc cacatatgag aaatttaacc aaatttatta ataagttatc
     1561 gaataggcaa gcgtgaaact ttgactgaac acgggttatg tttagaatgc aggattgccg
     1621 gaaacttaag tttttttgaa agtcctgttc cattcaagat tgcttgactt tttccaaata
     1681 attaactgtc gcccttttac caacgcttct cccgagccaa tatgattcca tttcataata
     1741 tcctgagctg taactttata aagtcgctca agagtattat acgtttcatt ggcttggaca
     1801 atatgtatga ccctgtatac tttacctttt gttggtgtct ggcttaagaa ttttgacttt
     1861 gaaatttcgt ggaaaggcaa tgctggagta cttttggcgc tcggaattaa caagatctga
     1921 ttgggtctta tcgagtgttc tgacagacga tttaattttt ttattaatga aacagtcgta
     1981 tgatattttc tggcaatact ttgtaaacta tcacttggaa ggacgagatg ttttctccag
     2041 ctcactcgtt tatcaacagg tgaatgggat aaattgaaat aaaattgagt cacttttgct
     2101 atagggataa gcaaagtgaa gggtttatag ggtgcggtag cccatctatt ataacccgga
     2161 tttaatttgg ttaattcact aaccgaaatt cctgctaaac tagccgcatg attcaagtca
     2221 atttgactgc caatattcac ctcttcaaaa taaggtcgaa atggcgttgc aggaagattt
     2281 attttataag cccgagggtt gctcatgatt tcagccaaag ctaaaaatcg agggacataa
     2341 atttgagttt ctttaggtac atccagattc caaaaactga cgctacctcc gttagtgtta
     2401 tttgctttta cagctctgcc tatggctcct tcgccagcat cgtaagctgc gatggaaagt
     2461 atccagcttc cgttaaacac tttatttaaa tgcatcaggt gagtcagggc tgcatcagtt
     2521 gaatgattaa tgcttcgtct tccatcaaac caccaatcct gaattaaacc taattgattc
     2581 cccgtcaccg gcattatttg ccataaacct gcagcaccaa cctttgagta agcaaaagga
     2641 tcgtaagcgc tttctatcat agggagtaat gccaactcac cgggtaaatt tcttctttgt
     2701 atttctcgag ttacatgata aagataaggc tcagcctgtt tacaggcctt agtcacaaac
     2761 cctggatgat ccagtagcca gcgaatttga tcttgaacct ctgggcgata ggcttcatga
     2821 ttcatcttga attcactgcg caaaacatcc catacatcag gtgtttcaaa tgatttagca
     2881 tgagtactga agataaaaaa aataaggcaa ctgaatagca gctgtatttt tttatcgatg
     2941 aatgtcttaa tcaaattact attcctgctc tataaagctt ctctggagcc cgtttataat
     3001 gtattgtttc tcttcgcctg aaccggtcct gagcgcgtct tataaaatat actcctctta
     3061 gtatcttgta taaagcactt cctgcaatat aaggccatga taatttaaca ccctgtctat
     3121 ttaacgtttt tttattaata ttgctctaac atttgtttca atatatgctg atggcccctc
     3181 cagcaattat ttatgacaaa ctgattttta tcagcgcggt tagggtttat tttcatatgg
     3241 aaatgggatg gccggttgtg tgtatcaagc atcaaggttg gtgggtagac atttagcatt
     3301 gcattttgca cgaaatgcaa actccaaagc attttccgag aattaaccag aacctggcca
     3361 tgagc
//
LOCUS       DACVWI010000262         3354 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.263, whole genome shotgun sequence.
ACCESSION   DACVWI010000262 DACVWI010000000
VERSION     DACVWI010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.263"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            37..978
                     /locus_tag="JBH85_14115"
     CDS             37..978
                     /locus_tag="JBH85_14115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HAU0947329.1"
                     /translation="MILNITAEQFPDLTLNAIKSCQNIYQSIDFNFGEDADIAINKTS
                     LEKFINQFKSIHSTHDKPIEGIITLGKMKNVSSDTIKLLLTTEDFVQMLDQKSFLKLI
                     VTSNEIANFVLDNPKLRAKLDGIEPLVDAQKFENSCTARAIMKILLERGFIEPSSYTP
                     GKELEIYKDIWLEPGKVASPEKIASYFCKYNLNVIGVEIRELSKSVRNKYSKDMVITS
                     LYSLFKKEVPIRKKMTLTTLSEADFPEGITSLIIIKAGVLHTLLGKKRHGQFEVTDPW
                     FGDKKIYSGFMDFLEKERKNLGVFFEISQGSQEIFRP"
     gene            complement(1073..1333)
                     /locus_tag="JBH85_14120"
     CDS             complement(1073..1333)
                     /locus_tag="JBH85_14120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947330.1"
                     /translation="MPASINSKRLIFNALFQIYLMWVLDKDYIRSSQYPESVWAEEMR
                     KHRLEALARNIKFHTRLRDGINASSARTIQNNGCLIHNSRYP"
     gene            complement(1356..2192)
                     /locus_tag="JBH85_14125"
     CDS             complement(1356..2192)
                     /locus_tag="JBH85_14125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAU0947331.1"
                     /translation="MLTFFNIVVLSYWIGQYFNESGESMFNQNLAIIIGGSSGMGLET
                     AKKLSSNNMELLITGKDKQKLENAAAEIQKLGAKVDILVLDLYDKEQVFQFMTSMNDE
                     TRRVKYLVNAAGYFKPITFLEHDEEDYDRQVNLNKAFFFITQAVVKNMKKNGGGSIVN
                     IGSMWANQAVKATPSSAYSMQKAGLHSLTQHLAMELAEHNIRVNAVAPAVVATPIYKS
                     FIDEERIEESLQDFNKFHPIGRIGKATDIADAIEFLLSEKASWITGEIMNVDGGVMAG
                     RN"
     gene            2215..2595
                     /locus_tag="JBH85_14130"
     CDS             2215..2595
                     /locus_tag="JBH85_14130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947332.1"
                     /translation="MVQIIEMDEKKLIQKKAPIKTASMVEAIYGCKWSLTIYSLLRNG
                     INRPGEMVRSVEGLSTKVLNQCLRKNIEFGILGRNTFHELPPRVEYFVTPFGEKFLKI
                     LDQIEELNEQIRDYQQPKFHNDDS"
     gene            2726..3316
                     /locus_tag="JBH85_14135"
     CDS             2726..3316
                     /locus_tag="JBH85_14135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HAU0947333.1"
                     /translation="MVAMNNPISLLTTWISEELEKGAPNPQHAILSTAGKNSIPHGRV
                     IAIREINEQGLLFFTQRGTRKVEEMTHNPMVSLTFWFELCEREVMIDGSARPLSESEN
                     QAYWDTYPPFAQIRFHSYAPTSSQVIPSKQLIENKRKILTSQFHDKPLPMSEYYYGFR
                     VIPTRMVFYTYRTDELSDVVEYCFIKNNWEKNLLSP"
BASE COUNT         1092 a          610 c          617 g         1035 t
ORIGIN      
        1 gttagtgtca gttttgggat gtgaagacag gttattatga ttttgaatat tacggcagag
       61 caatttccag atttgacgct taatgctatt aaatcctgtc aaaatattta tcaaagtatt
      121 gattttaatt ttggggaaga tgctgatata gccatcaata aaaccagctt ggagaaattt
      181 attaatcaat ttaagagtat tcatagcact cacgataagc ccattgaagg gattattact
      241 ttggggaaga tgaaaaatgt ctcctctgat acgattaaat tgcttcttac cacagaagat
      301 ttcgttcaaa tgcttgacca aaaaagcttc ttaaaattaa tagtaacctc taatgaaatt
      361 gcaaattttg tattagataa tcctaaatta agagcaaaac tggatggcat tgaacctttg
      421 gtcgatgcac aaaaattcga aaattcttgt actgcaagag caataatgaa aatacttctt
      481 gaaagggggt ttattgaacc aagcagctat acacctggca aagaattgga aatatacaaa
      541 gacatttggt tagaacccgg taaagtggca tcgcctgaaa agatcgcatc ctatttttgc
      601 aaatataatt tgaatgtcat tggtgtcgag attagagagc tatcaaaatc tgtacgaaat
      661 aaatattcaa aagatatggt tattacttca ctctattcac tttttaagaa agaggtgcca
      721 ataagaaaaa aaatgacatt gacaacctta agtgaggcag atttccctga ggggataacc
      781 tctcttatca ttataaaagc tggagtactc cataccttat taggcaagaa acgccatggg
      841 cagtttgaag taaccgatcc ctggtttggt gataaaaaaa tatatagtgg attcatggac
      901 tttctcgaaa aagagagaaa aaatctggga gtattttttg aaatttctca aggatcccaa
      961 gagattttta gaccgtaatg gttatcaatg tttgccaaaa gcaaatggcc acattattcc
     1021 atgcaagcaa tgaaaagcct tagtgcgagc atcaatagca agagattgat ttttatggat
     1081 aacgtgagtt atggataaga cagccattat tttgaatcgt tcgggctgag gaggcattta
     1141 tgccgtctcg aagccttgta tggaatttaa tgtttcttgc caaggcttcg agacgatgct
     1201 tacgcatctc ctcagcccaa acggactctg gatattgact gcttcttata taatccttat
     1261 ccagaaccca catcagataa atctgaaaca gggcattaaa aatcaatctt ttgctattga
     1321 tgctcgcagg cataaatcta gataaggttt gctgattaat ttcttcctgc cattacccct
     1381 ccatcgacat tcataatctc ccctgtgatc cagcttgctt tttctgacaa aagaaattcg
     1441 attgcatcag cgatatctgt tgccttaccg attctgccga taggatgaaa tttattaaaa
     1501 tcctgtaacg actcctcgat tctctcttca tcaataaatg atttatagat aggagtggct
     1561 accactgccg gtgccacggc gtttactctt atattgtgct cagcaagctc catagctaaa
     1621 tgttgggtta gtgaatgaag tccggctttt tgcatggaat aagcagagga gggggttgct
     1681 ttaaccgctt gattcgccca cattgaaccg atattgacga tactaccccc tccatttttt
     1741 ttcatgtttt ttactacggc ctgggtgata aaaaagaacg ccttattaag attaacctga
     1801 cgatcgtaat cttcttcatc atgttctaaa aaagtgatgg gtttgaaata acctgcggca
     1861 tttacaagat attttactct tcgagtttca tcattcatac tagtcataaa ttggaatacc
     1921 tgctctttgt cataaagatc aagaactaaa atgtctactt ttgctcccag tttttgtatt
     1981 tctgccgcag cattttcaag tttttgttta tcttttccgg taattaacag ctccatattg
     2041 ttacttgaaa gtttttttgc agtttcaagg cccataccac tagagccgcc aataataata
     2101 gctaaatttt gattgaacat agattctcct gattcattaa aatactgtcc aatccagtat
     2161 gaaagaacta caatattaaa aaaagtaagc acttttcagt tcactaagta ctttatggta
     2221 caaattattg aaatggatga aaaaaaatta atacaaaaaa aagctcccat taagaccgca
     2281 tcaatggtag aggctatcta tggttgtaag tggtccttga ctatctattc tcttttacga
     2341 aatggaatca atcgaccagg ggaaatggta cgaagcgttg aaggactatc aacaaaagtt
     2401 ttaaaccaat gccttcggaa gaatattgaa tttgggattc tcggcagaaa tacctttcat
     2461 gagctacctc ccagagttga gtattttgtg actccttttg gagaaaagtt tttaaaaatt
     2521 ctggatcaaa tagaagagtt aaacgagcaa atcagggatt atcaacaacc caagttccac
     2581 aatgatgata gttaagattt tttgtaaaag acgtattacc aatagactgc gggtgaatta
     2641 tggctcacaa tactcagcgt cgcaatgagc tgttgttaat cagtatcatt atgaacatca
     2701 aaaaatattt gcaataggta ttcaaatggt ggccatgaac aatcccatta gccttttaac
     2761 aacatggatt tctgaggaat tggaaaaagg agcacctaat ccacagcatg ccatattatc
     2821 tacagcaggc aaaaactcta ttccccatgg gcgtgttatc gccattcgcg aaatcaacga
     2881 gcaaggttta ttatttttta cccaacgagg aaccagaaaa gttgaagaaa tgacccataa
     2941 ccctatggta tctctcactt tttggtttga gttatgtgaa agagaggtca tgatagacgg
     3001 ttcagccagg ccattatcgg aaagcgaaaa tcaagcatac tgggatacct atccgccttt
     3061 cgcgcaaatc agatttcata gttatgcgcc tacttcctca caagttatac ccagcaaaca
     3121 actcattgaa aataaaagaa aaatattgac ttctcagttt cacgataagc cattgcctat
     3181 gagtgaatat tattatggtt tcagagtcat tcccacacgc atggtttttt atacttatag
     3241 aacggatgaa ttgtctgatg tcgtagaata ttgttttata aaaaacaatt gggagaagaa
     3301 tctgctttct ccttaatatc aatttgttta agcctcatga ttgacgcaac aata
//
LOCUS       DACVWI010000263         3304 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.264, whole genome shotgun sequence.
ACCESSION   DACVWI010000263 DACVWI010000000
VERSION     DACVWI010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.264"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            357..1208
                     /locus_tag="JBH85_14140"
     CDS             357..1208
                     /locus_tag="JBH85_14140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0947334.1"
                     /translation="MMKTKILSIPGLSIACKVWGNPDNPPILALHGWLDNANSFDNIA
                     EHLQNDYYFIAVDLPGHGHSSHLPPGCIYHFTDGIFTVVEIINALGLNKLHLLGHSMG
                     ACLGSLVAGVAPDRFLSLSLIEGLGPFSHPAETACQQLSKYLDYLSQKQSKKAKGYNK
                     FEHAALARSVKGYVSLDIAKSLCERGIQQENGLYYWRHDRRLLAPSPLQMTEAQVLSC
                     LTEIKAQTYLIWASKGFSFDSDKMKARIQAVKNIKIERLDGGHHIHMEKPEVISRLLA
                     KFYQSIK"
     gene            complement(1210..2841)
                     /locus_tag="JBH85_14145"
     CDS             complement(1210..2841)
                     /locus_tag="JBH85_14145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M4 family metallopeptidase"
                     /protein_id="HAU0947335.1"
                     /translation="MHPNYYLSPLAVAIALGIASPVKAADPIPLQKSSFSEVTQKFQL
                     TLPGVMKGAVVSTNSLQFIRQHTDGNKVTHVRMQQQYAGFPVFGGYAILHSKNATPSL
                     ATAKSDVKMNGVIYDGLQAELGQPKPSFVKNASLALQQFKDKYANKQISEDQVTPMIY
                     IDEKHQAHWAYKVSVLVIHDDRIPERPTAIIDAETNKPFVQWDDVKTEKVQAKGMGFG
                     GNRKIGEYQFGKDLPLLEITRDSSVEMCFMENTDVKVVDMGHKYYSNNKPMQFTCKET
                     PDTQSTKTYYTGYSADGYDRDNGAASPTNDALYAGYVIKHMYHDWYGVEALTKSDGSP
                     MQLVMRVHYGQGYENAYWDGKQMTFGDGDTMMYPLVSLGVGGHEISHGFTEQHSGLEY
                     FGQSGGMNESFSDMAAQAAEYYSVGKNSWQIGPEIMKEDSGYDALRYMDKPSRDGMSI
                     DVADDYYGGLDVHYSSGVYNHLFYILANQPNWNLRMAFDVMVKANMDYWTPYSTFDEG
                     GCGMLSAAKDLGYNLDDVKKSLSEVTINYQSCYVD"
BASE COUNT         1048 a          676 c          539 g         1041 t
ORIGIN      
        1 atgattaact cggactctga attattttta tttatcataa tattggccct tccccaaaaa
       61 ccagtaaagc catttatttt gtgatctttt atagtttgtt acaagtcaac ccaataatcg
      121 acttacttta ttgctttttg tctatttcaa ttactatcaa gacttgcgaa aaaaaccaag
      181 accaaggcaa aaattgattt tgatgaggaa gattaaataa actaaatgac tggattaaaa
      241 gcatttttta gcgaagagat tatttttttc gcaagtcctg actattttaa aaactgaatt
      301 tacatccctg cgtataaagt aataagctat aactattacc tacaaaccaa agaaaattga
      361 tgaaaacaaa gattttaagt atcccgggac tatctatagc atgcaaagta tggggaaatc
      421 ctgataatcc gcctattctt gccttgcacg gttggttaga taatgctaat agttttgata
      481 atattgctga acatttacag aatgattact attttatagc cgtagatcta cctggacatg
      541 gtcattcttc acacttaccc ccaggatgta tatatcattt tactgatgga atatttactg
      601 ttgttgaaat tattaatgcc ttgggactaa ataagcttca cttgctaggg cactctatgg
      661 gagcctgctt gggaagtctt gtagctgggg ttgcgccgga tcgttttctt tcattaagct
      721 taatcgaagg tttaggccct ttttctcacc cggcagaaac agcatgccag caactgtcaa
      781 aatacctgga ctatctatca caaaaacaat caaaaaaggc aaaaggctac aataagtttg
      841 aacatgctgc tcttgcccga tccgttaaag gatatgtttc tctggatatt gccaagtcac
      901 tttgcgaacg cggaattcaa caagaaaatg gtctatatta ttggagacac gatcgcaggc
      961 tattagcccc atctccatta caaatgactg aagcacaagt tctttcctgc cttacagaaa
     1021 taaaagctca aacttacctt atttgggcca gcaaaggatt ttcatttgat tcggataaga
     1081 tgaaagcaag gattcaagca gtaaaaaata ttaaaattga gaggttagat ggtggacacc
     1141 atattcatat ggaaaagcca gaagtcatca gtcgacttct ggctaaattt tatcaatcaa
     1201 taaaatgaat taatcgacat aacaagattg ataatttata gtcacttcac tcaatgactt
     1261 cttaacatca tccagattgt aacccaggtc tttggcagca ctcaacatac cgcaaccacc
     1321 ctcatcaaat gttgaataag gtgtccaata atccatattg gctttcacca tgacatcaaa
     1381 agccattcga agattccaat taggttgatt ggctaatatg tagaataaat ggttatacac
     1441 tccactggag taatgaacat ctaacccacc ataataatca tcagctacat caatagacat
     1501 accatcacgg cttggtttat ccatgtaacg caatgcgtca taaccactgt cttctttcat
     1561 tatttccggg ccgatttgcc agctgttttt tccaaccgaa taatattcag cagcttgggc
     1621 agccatatct gaaaacgact cattcatgcc accagactga ccgaaatatt caagtccaga
     1681 atgttgttcg gtgaacccgt gactgatttc atggccacct acacctagag aaaccaaagg
     1741 atacatcatg gtgtcaccat caccaaaggt catttgtttg ccgtcccagt aggcgttttc
     1801 atagccttga ccataatgca ctctcataac taattgcatt ggcgatccat ctgatttagt
     1861 caatgcctcc accccatacc aatcatggta catgtgttta atgacataac ctgcatacaa
     1921 tgcgtcattg gtaggagaag cggctccatt atctctatca taaccatcag ccgaatatcc
     1981 ggtataataa gttttagtcg attgagtgtc gggagtctct ttacaagtaa attgcatagg
     2041 tttgttattt gaatagtact tatgtcccat gtcgactact ttaacatcgg tattttccat
     2101 aaagcacatt tcaacacttg aatcacgtgt gatttctaat aatggcaagt ccttgccaaa
     2161 ttgatattca ccaattttac gatttccacc aaagcccatc ccttttgctt gaactttttc
     2221 cgtttttaca tcatcccatt gaacaaaagg cttattggtt tctgcatcaa taattgctgt
     2281 tggtcgctca ggaattctat cgtcatggat aactaaaacg ctgactttgt aagcccaatg
     2341 agcttgatgt ttttcatcaa tataaatcat tggggttact tgatcttcac taatttgttt
     2401 attcgcgtat ttatccttaa attgttgtaa tgccaaagaa gcatttttca caaatgaagg
     2461 tttaggctgg cctaattctg cttgcaaccc atcataaatc acaccattca ttttcacatc
     2521 agattttgcc gtcgctaaac taggagtggc attcttactg tgcagaatag cgtaaccacc
     2581 aaaaactgga aacccggcat attgttgctg catacgaaca tgcgtcactt tattcccatc
     2641 agtatgctgt cttataaact gcaaactatt cgttgaaact acagcacctt tcataacacc
     2701 aggcaaagtc aattgaaatt tttgtgtgac ttcagaaaaa gatgactttt gtaaagggat
     2761 cgggtcggct gccttcacag gtgaagcaat ccctaatgct atagctacag ctaaaggtga
     2821 caaataataa tttgggtgca ttgattctaa ctccttaaac taaattctca tacagcaact
     2881 cttcctggag tgcccaggtt tgttatattc ccctataatt tttcagttaa ttttttagcg
     2941 tagactaatg ctcaactgca aaattaagga tgatccaaat caggacaata cttaagataa
     3001 taaaaaagta ttttcctttt ttaattcaac tatttggata gtatcctaat atttctaggc
     3061 atataaccaa ctaccatttt caaaatgcaa gaactctttt ccaaactttt ccaaactagc
     3121 acaaatttat tatttttgaa aatactaatt ttgctcagat gcaaaacttg agtttatccg
     3181 acattttgaa aagccacaga ctgatggact tgggctctct aaataatttc caaaaaaaat
     3241 tgacctaagt ggtgcaattt taacctaatt aaataataaa gcaattgctt tttaaaccta
     3301 acag
//
LOCUS       DACVWI010000264         3303 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.265, whole genome shotgun sequence.
ACCESSION   DACVWI010000264 DACVWI010000000
VERSION     DACVWI010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.265"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(9..425)
                     /locus_tag="JBH85_14150"
     CDS             complement(9..425)
                     /locus_tag="JBH85_14150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK protein"
                     /protein_id="HAU0947336.1"
                     /translation="MKKMFLAVFTLCSFTAQAAVELNTFQNIVDAIAEGKRITFVINL
                     KKCTSEMPLNSAIVSVTPNAVMVIGDSRVTASDRHFTLDDPLARGTPMFDYSKFNLDS
                     EGDASIKTTVLNASSYERLGSYQMNCKLGDGFKVFG"
     gene            802..1902
                     /locus_tag="JBH85_14155"
     CDS             802..1902
                     /locus_tag="JBH85_14155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HAU0947337.1"
                     /translation="MKIRLKRLLSNPHFMPRKRYSQVIVMIELCGLKKSFSGKLALND
                     INLFIQEGEIFGVIGKSGAGKSTLLRCINILEKPDEGEVVIDGQNLMSLSRKDLALAR
                     HKIAMIFQHFNLLNSKTVFDNIALPMRIQGIDEESIKQKIEELLPVVELTDKKDAFPS
                     QLSGGQKQRVAIARALSCSPKVLLCDEATSALDPATTDAILSLLKKINELYGITIVLI
                     THEMDVVKRICQRLSVMVDGKIVETTALSNIFNKPESLARKMLYAQISPELPTCLTRR
                     LADYATEKPLVRLFFQGEEATVPFISQTSRELNMDINILLANIDRFDGVTCGVLVVEL
                     TANPLLLEAFINRCEQAGITVEVLGYVLPDGL"
     gene            1880..2527
                     /locus_tag="JBH85_14160"
     CDS             1880..2527
                     /locus_tag="JBH85_14160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0947338.1"
                     /translation="MSYQMVYDLLNATGETLYMVFFSTLFAVLLGLPLGILLYSSSRI
                     KPNIKLNKILSALINIFRSIPFIILLVAIIPFTRLIVGTSIGINAAIVPLTVGATPFF
                     ARLVDNVLQSLPLGLIETGYSMGANTRQIILHIILPEAQSGLIHSITVTAITLINYSA
                     MAGAVGAGGLGTLAINYGYQRFNAGIMIATVIVLIILVQLIQMVGDYLAKRCTHY"
     gene            2528..>3303
                     /locus_tag="JBH85_14165"
     CDS             2528..>3303
                     /locus_tag="JBH85_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HAU0947339.1"
                     /translation="MGGSMRILSCLVLIISLVACSSKPAPNTLVIGTIAGPETELIET
                     AKQVAEKEYGLNIKIVEFNDYNLPNEALQDGSLDANVYQHLPYLKAAILSHGYDLQAI
                     GRTFVYPMGIYSKKYKTLSELPENGIIAVPNDPSNEMRAFLLLEKAHLITLKNTTNSG
                     IQDIESNPKQFKFKEIDAAQLPRVLPDVDAAVINTTFALPAGLSPSKDALFTEGKDSP
                     YANIIVIRRDTEKRPQLELFVKALNSEEVKEKAKKLFGEDA"
BASE COUNT         1044 a          629 c          610 g         1020 t
ORIGIN      
        1 aaactcattt acccgaatac tttaaaacca tcccctaatt tacaattcat ttgataactt
       61 cctaatcgct cataactact tgcattcagc acagtggttt taattgaagc atcaccctca
      121 gaatctaaat taaacttact gtaatcaaac ataggtgtac cgcgagccag cggatcatca
      181 agagtaaaat gcctatctga ggctgtaaca cggctatcac cgattaccat aactgcattc
      241 ggagtaactg aaactattgc agagttcaat ggcatttccg aagtacattt ttttaagtta
      301 attacaaaag tgattcgctt tccttcagct atagcgtcta ctatattttg aaaagtgttt
      361 aattctactg ctgcctgcgc tgtgaatgag cacaaggtaa aaactgctaa aaacatcttt
      421 ttcatgaata atgttccttg tattaaaacc ggcttaaggt tgccaataag aatttatctt
      481 gtcaatcctc aaccaaaata attattttca gaccgaatga caccgcgaat ctggttaatg
      541 cgaattatct ctttttatat aaaccaaaag ccaaccaata atcatgaaaa acaaatcgag
      601 atactcaaca gaattaagat ttttctttgt ttatgaatcc agtttgtgta tacttgtgca
      661 tagcgtcgat ttgaaacaca gcttgcggac gctcaaaaga tttattcctc tgtttaagaa
      721 catgaaaact ctaaaatcga ggtaaaatgc aatttttgct ttttattaag aattattgtt
      781 ttccagtgct gcagatatct tttgaaaata cggctaaagc ggttgctttc taatccccac
      841 tttatgcccc gcaagcgata ttcccaggtt atagtaatga ttgaattatg tgggctaaaa
      901 aaatctttct ctggtaaact cgccttaaac gatattaatt tatttattca ggaaggtgaa
      961 atttttggag ttatagggaa aagcggggca ggaaaatcaa cattactgcg ttgcatcaat
     1021 atattggaaa aacctgacga aggtgaagtc gttattgatg ggcagaatct gatgagcctt
     1081 tccagaaaag atttagcctt ggcacgtcat aaaattgcca tgatcttcca acattttaat
     1141 ttgctaaatt caaaaactgt ttttgataac atagcccttc cgatgagaat tcaaggtata
     1201 gacgaagagt cgatcaaaca gaaaattgaa gagttgcttc ctgttgtcga gttaacagat
     1261 aagaaagatg ctttcccctc acaacttagt ggtgggcaaa aacaaagagt agcaattgca
     1321 cgagcactaa gttgttctcc caaagttcta ttatgtgatg aagccacttc agccctcgat
     1381 cctgcaacta ctgacgccat attatcacta ctaaaaaaaa tcaatgaatt gtatggaatt
     1441 actattgtct tgattactca cgaaatggat gtcgtaaaac gtatatgcca aagactgtct
     1501 gtcatggtcg atggcaagat tgttgaaact actgctttat ctaatatttt caataagcca
     1561 gagagtctcg ctcgcaaaat gctttacgca caaattagcc ctgaactccc aacctgcctt
     1621 actcgcaggc tggcggacta tgctactgaa aaacctctcg tgagattatt ttttcagggc
     1681 gaggaagcaa cggtaccttt tattagccaa accagcagag aattaaacat ggacatcaat
     1741 attctactgg caaatattga tcgtttcgat ggagtgactt gtggtgtttt ggttgttgaa
     1801 ttaacagcga atccattatt gcttgaagca tttatcaatc gttgcgaaca agctggtatt
     1861 actgtggagg ttttaggcta tgtcctacca gatggtttat gatttactta acgcaacagg
     1921 agaaacactg tatatggtgt tttttagtac tctatttgca gtactccttg gcttgccttt
     1981 aggtatattg ctgtactcat catctcggat aaaaccaaac attaaattga ataaaatttt
     2041 atctgctctg attaatattt tccgttccat cccttttatc attttacttg ttgcaattat
     2101 accattcacc aggctaattg ttggtaccag catagggatc aatgcagcaa tcgttccatt
     2161 aacagttggt gcgactcctt tttttgcaag gctagttgat aatgttctcc aatcgttacc
     2221 ccttggtctt atagaaaccg gttattcaat gggagctaac acacgccaaa ttattttaca
     2281 tatcatatta cctgaggcac aatcaggatt aattcattcc attacagtaa cagcaatcac
     2341 tctgattaat tattcagcca tggcaggagc tgtgggtgcc ggaggattag gtacattagc
     2401 gattaactat ggttatcaac gctttaatgc tggcattatg atagctactg tgattgtatt
     2461 aattattttg gtccaactga tacaaatggt tggagactac ttggccaaac gttgtacaca
     2521 ttattaattg ggaggttcaa tgagaatttt aagttgtttg gttttaatca ttagcctggt
     2581 agcttgcagt agtaagccag ctcccaatac cttggtcatc ggcacaattg ctggccctga
     2641 aacagaactt attgaaacag caaaacaagt tgctgaaaaa gagtatgggc tcaacataaa
     2701 aattgttgaa tttaatgatt ataatttgcc caatgaagca ctgcaagatg gcagtctaga
     2761 tgctaatgtt taccaacatt taccttattt aaaagctgct atactgtccc atggttatga
     2821 tttgcaggca atcggcagaa ccttcgttta tccaatgggt atttattcga agaaatataa
     2881 aacactcagt gaattacctg agaatggaat aattgcagtc cctaatgacc ctagtaatga
     2941 gatgcgcgcc ttcttgttat tggagaaagc tcatttaatt actcttaaaa atacaacgaa
     3001 tagcggtatt caagatatcg aaagtaaccc caaacaattc aaattcaaag agatagacgc
     3061 cgctcaatta ccaagagtgc tccctgatgt tgatgccgca gtaattaaca cgacgtttgc
     3121 cttgcctgcc ggattaagcc catcaaaaga tgctttattt actgaaggca aagattcacc
     3181 ttatgccaat atcattgtga tacgccgtga cactgaaaaa aggccacagc ttgaattgtt
     3241 tgtgaaggcg ttgaattcag aagaagtaaa agagaaagca aaaaaactgt ttggagaaga
     3301 tgc
//
LOCUS       DACVWI010000265         3300 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.266, whole genome shotgun sequence.
ACCESSION   DACVWI010000265 DACVWI010000000
VERSION     DACVWI010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.266"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..2130
                     /locus_tag="JBH85_14170"
     CDS             <1..2130
                     /locus_tag="JBH85_14170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HAU0947340.1"
                     /translation="SHIDLGELAKNDSLLACLVLLTRYYQNPFSPPSLIARLPLVNSK
                     LSVDMFSRAAARASLDSEVKTIKLEQITDSDIPLVLIKKNGEAVLLILEDDGKKAILD
                     PKQPDSRIDLNQIADELSGEVIFVEQQYKPSTRAHETLSKEQKNWFWKVVIKSWPLYS
                     EVLVASLLVNIFALVVPLFSMNVYDRVVPNHAIETMWVLASGVALVFLFDMLLKSLRS
                     YFIDVANKHSDKELSALIFQQVLGLSMANRPKSVGSLANTVQSFEVFRDFITSTTMTV
                     LVDLPFVFIFLFVIYLIGGVLFWIPFLVLPTIFITGLLLQWPLIRLTRKSYQYGAEKQ
                     ATLFESLATIETVKTTGAESVLQSRWERIINESSKNSMQLRFVANTSISITNLAQQIA
                     TIAIIIAGVYMISEGELTTGGLIACTILTGRALAPMAQVSTLFTRYFQSVNALDSLNK
                     IMQLETDTTEETRYLHRPSLKGAVEFKQVSFHYKEDETKVLQNLNFKINAGERVAIIG
                     RVGSGKSTLGKLILKLYVPNEGTILLDGTDYKQINPDDLRQQIGYVPQDIVLFYGSIR
                     DNICVGAPFINDSALLEAAEIAGVTSFTNNHPKGFDRQVGEKGAELSGGQRQSVALAR
                     ALIMSPNILLLDEPTSAMDDNNEKQIKKNLNEYLSDNRTLILITHKISMLELVNRIIV
                     LENGKIIADGNKEAVLSALRTGVTVRK"
     gene            2134..3270
                     /locus_tag="JBH85_14175"
     CDS             2134..3270
                     /locus_tag="JBH85_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HAU0947341.1"
                     /translation="MKKTHSSKTFTHIILWTSLLFFIVAIIWANYAILDEVTTGQGKV
                     IPSSEVQVIQNLEGGIIQNIFVKEGQIVKKDQILMQIDNTRFMASYAEAEKKIDALEI
                     EIIRLNAEISDTKPVFPDKFIKTYPHLVQDQLSLYESRMRELNQLKKSLELAQKELDL
                     TRPLLKGGSVSEVEVIRLERSVSEIKGNIEKFKSEELDKLNKARTELFALIEANKADK
                     DRLTRTTVRSPVYGIVKQIKTTTIGGVVQPGSDLLEIVPLDDTLLIEAKIRPSDIGFI
                     HPGQKAMVKITAYDFSIYGGLEGVVEHISADTIIDEKTDKKEESYYIVKVRTDKNYLG
                     TEKKPLPIIPGMQATVDILTGQKSVLQYLLKPIIKAKQSALRER"
BASE COUNT         1047 a          557 c          663 g         1033 t
ORIGIN      
        1 tctcatattg atttgggtga actagccaag aatgactctc tgctagcctg cctggtatta
       61 ttaactcgat attatcaaaa tccgttttcg cctccatcac ttatagctcg tttgccattg
      121 gtcaatagta aattgagtgt tgatatgttt tcgcgtgccg ctgccagagc ctctttggat
      181 tctgaagtca aaactataaa attagaacaa atcactgatt cagatattcc cttagtattg
      241 attaaaaaaa atggcgaggc tgtgcttcta atactggagg atgatggtaa aaaagcaatc
      301 cttgatccca agcaacctga ttcccggatt gatttgaacc aaattgccga tgagttaagt
      361 ggtgaagtca tttttgttga gcaacaatac aaacctagca ccagagcaca tgaaactctt
      421 tccaaagagc aaaaaaactg gttttggaaa gttgttatta aatcttggcc attgtattct
      481 gaagttcttg tggcctcctt gctcgtgaat atatttgcac tcgttgttcc attatttagc
      541 atgaatgtgt atgaccgtgt ggttccaaac catgctattg aaaccatgtg ggtgcttgct
      601 agtggtgtag ctttggtatt tctctttgat atgttgctca agagtttacg atcctatttc
      661 attgatgtgg caaataaaca cagtgataaa gagttgtctg ctttaatatt tcagcaagtt
      721 ctcggattaa gtatggctaa caggccaaaa tcggttggtt ctttagccaa tacagtacag
      781 tcatttgaag tattcagaga ttttattact tcgactacta tgacagttct tgttgatctt
      841 ccttttgtat ttatttttct ttttgttatt tatttgattg gcggggtgtt gttttggata
      901 ccttttttag tgctccctac tatttttata acaggtttgt tgctgcaatg gcctttaatt
      961 cgacttacaa gaaaatccta tcaatatggt gctgaaaaac aagcgacgtt gtttgagtct
     1021 ttagctacta tagaaactgt aaagacaact ggagcagaat cagtcctgca atcacggtgg
     1081 gaaagaataa ttaatgaatc ttctaaaaac tctatgcaat tacgttttgt agccaataca
     1141 agtatcagta tcactaatct ggcccaacaa attgcgacta tcgctattat tattgcaggt
     1201 gtttatatga tctccgaagg tgagttaact accggtggat taattgcctg taccatattg
     1261 accggaagag cattggcgcc aatggcgcag gtatccactc tatttacacg ttacttccaa
     1321 tcagttaatg ctctggactc attaaacaag attatgcaac ttgagacaga taccacagaa
     1381 gaaactcgtt atctccacag accttctctg aaaggtgccg ttgaatttaa acaggtgtct
     1441 tttcattaca aggaagatga gacgaaggta ttacaaaatc ttaattttaa aattaatgct
     1501 ggtgagcgcg ttgcaattat aggacgagtt ggttcaggta aatcgacttt gggaaaacta
     1561 atattaaagc tttacgttcc taacgaagga actattttgc tggatggcac cgattataag
     1621 caaattaatc ctgacgattt acgtcagcaa ataggttatg ttcctcagga tattgtttta
     1681 ttttatggaa gcataagaga taacatttgt gtaggtgccc cctttataaa cgactctgct
     1741 cttttagaag ccgctgaaat agctggggta acgagtttta ccaataatca tcccaaaggc
     1801 tttgatagac aagtaggaga aaaaggagct gaattatcag gaggacaaag acaatctgtc
     1861 gctcttgccc gtgctttgat tatgagccct aatatcttgt tattggatga gcctacttcg
     1921 gcaatggatg ataataacga aaagcaaatc aagaaaaatc ttaatgaata cttatccgat
     1981 aatcgtactt tgattttaat aactcataag atttccatgc tggagctggt caatcgtatt
     2041 atcgttttgg aaaatggcaa aatcattgct gatggtaata aagaagctgt tctaagcgcc
     2101 cttaggacag gggtaacggt gaggaaatag tctatgaaaa aaactcacag ctcaaaaacc
     2161 tttacccata ttatcttatg gacttccttg ctttttttta ttgtagcaat tatttgggct
     2221 aattatgcca ttcttgatga agtaactaca ggacaaggaa aagtaattcc ctctagtgag
     2281 gttcaggtca tacagaatct tgaaggcggg attattcaga atatttttgt caaagaaggg
     2341 caaatagtta aaaaagatca aattttaatg caaatcgata atactcggtt tatggccagc
     2401 tatgccgaag cagagaaaaa aattgatgca ttggaaatag aaattataag gcttaatgct
     2461 gaaattagtg atacaaaacc tgtgtttcca gataaattta tcaaaaccta tcctcatctt
     2521 gtgcaggatc agttgtctct gtatgaatca cggatgagag agttgaatca actgaaaaaa
     2581 tccctagagt tggcgcaaaa agaattggat ttaactcgtc cattattaaa gggtggatcc
     2641 gtttcagaag tagaggttat tcgtctggaa agatcagtaa gtgaaattaa aggaaacatt
     2701 gagaagttca aatcagaaga actggataaa ttgaataaag ccagaacaga gttgtttgcg
     2761 ctgattgagg ccaataaagc ggataaagat cgtttaacaa ggaccacagt tcgttctcca
     2821 gtttatggta ttgtaaaaca aattaagacg acaacgattg gtggtgtagt tcaaccaggt
     2881 agtgatttac ttgagatagt cccgcttgat gatactttat taattgaagc aaaaatacgc
     2941 ccttctgata ttggttttat acacccaggc caaaaagcga tggttaaaat tactgcttat
     3001 gacttttcta tctatggtgg attggagggt gttgtagagc atattagtgc cgatactatt
     3061 attgatgaga aaacagataa aaaagaagaa agctactata tagtgaaagt gcgaacagat
     3121 aaaaattatc tgggaactga aaaaaagcca ttgcctatca ttcctggcat gcaagccacg
     3181 gttgatatac ttacaggtca aaaatctgtt cttcaatacc tcttgaaacc tatcattaaa
     3241 gctaagcaat cagcactaag agaacgttga ttattagaag tccttaactt gttatattat
//
LOCUS       DACVWI010000266         3257 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.267, whole genome shotgun sequence.
ACCESSION   DACVWI010000266 DACVWI010000000
VERSION     DACVWI010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.267"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            39..836
                     /locus_tag="JBH85_14180"
     CDS             39..836
                     /locus_tag="JBH85_14180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0947342.1"
                     /translation="MPDNWVEIKNLFFSLDDHCIFDGIDMVVKQGKITAIMGPSGSGK
                     TTLLRLIGAQLRPDSGQIYVNGQNIHQLSRKSLYETRRNMGLLFQSSALFTHLSVFEN
                     VAFPLREHTELNASMIRNIVLMKLEAVGLRGAAHLMPAQLSGGMCRRVALARTIALDP
                     VLMMYDEPFTGQDPISMGVLVRLIQRLNQLLHTTTIIVSHDVEETCSIADYIYLISGG
                     KIIGQGTPDELKRSIEPQIRQFMHGEADGVVPFHYPAKPYTEELLNA"
     gene            829..1611
                     /gene="mlaE"
                     /locus_tag="JBH85_14185"
     CDS             829..1611
                     /gene="mlaE"
                     /locus_tag="JBH85_14185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HAU0947343.1"
                     /translation="MLDTIARLGNRGVQALQGIGSSGLFLFSMLFRKPNVLRLWPLLR
                     YQLYFIGVLSCLIIVVSALFIGMVVGLQGYNTLQKFGASSQLGQLLALSVARELGPVI
                     SALLFAGRAGSALTAEIGLMKATEQLSSMDMMGVDPLGRVVYPRFVAGFIALPILALI
                     FSAVAIYGGYFIGVYWLGVDAGSFWSNMQAAVNFRIDILSGIIKSLVFAFVVTWISVY
                     QGFECVPTAEGISHATTKTVVYSSLAVLGLDFLLTAMMIGDW"
     gene            1612..2088
                     /gene="mlaD"
                     /locus_tag="JBH85_14190"
     CDS             1612..2088
                     /gene="mlaD"
                     /locus_tag="JBH85_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HAU0947344.1"
                     /translation="MKKQRYVDISVGIFMLLGLLALLVMAMKVSNITDFMSDKTYRVT
                     ADFTDIGGLKVRAPVTVAGVRIGEVSRIELQPGELNARVTMTLNGDKKIPYEDASARI
                     LTEGLLGSNYISIVPGFDEDGDTDHPYLRDGDTIAKTQEAIILENLIGQLLFNIKK"
     gene            2096..2704
                     /locus_tag="JBH85_14195"
     CDS             2096..2704
                     /locus_tag="JBH85_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAU0947345.1"
                     /translation="MRVFKTIFLVVLMTLSQAMVAQTSPIPMLERAANQIISILKENK
                     ARLKSNPEIIYKAVEENLLPNVDVAGMSRSVLGRQAWSKATEAERVEFSKAFTRLVIR
                     TYSSPLAQYSDETVQFLPLRGSLNSRFIRVNSVIVRSAGQNIPLSYSLVSKNGKWKIY
                     DISVEGVSLLQSFRSQFAQALQHSSISQVIKEMQQKQIKKAS"
     gene            2707..2988
                     /locus_tag="JBH85_14200"
     CDS             2707..2988
                     /locus_tag="JBH85_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HAU0947346.1"
                     /translation="MEINNFKPGGELTFKSVVSVRDKLYKALMEDTRERFCLDLSDVT
                     HCDSAGLALIIEARKLCKQNNKVFDVIGISPETQSLAEFCGVQTILQRS"
BASE COUNT          935 a          514 c          730 g         1078 t
ORIGIN      
        1 catcattacc cgttaaaata ataagtggat aataaagcat gcctgataat tgggttgaaa
       61 taaaaaatct attctttagc cttgatgatc actgcatttt tgatggcatt gatatggtag
      121 ttaaacaagg caagattacc gctattatgg gacctagtgg ttctggaaag actactttac
      181 tgcggttaat tggtgcgcaa ttaaggcctg atagtggcca aatttatgtt aatggtcaga
      241 atattcatca attatcccgc aaatcacttt atgaaaccag gcgaaacatg ggattacttt
      301 ttcaaagtag tgccttattt acacaccttt cagtatttga aaatgttgcc tttccattaa
      361 gagaacacac tgaattaaac gcgtccatga taagaaacat tgtattaatg aaacttgaag
      421 cggttggttt gcgtggagct gcccatctaa tgcccgcaca attatcaggg ggaatgtgca
      481 ggagagttgc attagccaga accattgctc ttgatcctgt attaatgatg tatgatgagc
      541 cttttaccgg gcaagatcca atttccatgg gagtattggt cagattaata caacgattga
      601 atcaattatt gcataccact actattatcg tatctcatga tgttgaagaa acttgttcaa
      661 ttgctgatta tatctactta atatcagggg gtaaaattat aggtcaaggt actccggatg
      721 aattaaagcg atctattgag cctcagataa gacagtttat gcatggagaa gcggatgggg
      781 tagtgccttt ccattatccg gcaaaaccgt atacagagga gttattaaat gcttgataca
      841 atcgcgcgtc tgggtaatcg aggtgtacaa gccttacaag gtattggtag ttcagggctg
      901 tttttatttt ccatgttgtt cagaaagcct aatgttttga ggttatggcc attattacgt
      961 tatcagcttt attttatcgg tgtattgtct tgtttaatta ttgtggtttc agccttgttt
     1021 attggtatgg ttgtaggact tcaggggtat aatacgttac aaaaatttgg tgcttcaagt
     1081 caattaggtc aattattggc tttaagcgtc gccagagaat tagggcctgt gattagcgct
     1141 ctgttgtttg cagggcgtgc cgggtcggct cttacagctg aaattggttt aatgaaagca
     1201 acagagcagt tatccagtat ggatatgatg ggagtggatc cattaggaag agtggtttat
     1261 ccgcgttttg tagcaggatt tatagcgtta ccgatacttg ctttgatttt ttctgcagta
     1321 gctatatatg gcggttattt tattggtgtt tactggttag gtgtggatgc agggagtttt
     1381 tggtctaata tgcaagctgc tgtaaatttt cgtatagata tcttaagcgg gattattaaa
     1441 agcttggttt tcgcatttgt ggttacctgg atttctgtat accaaggttt tgagtgtgtg
     1501 ccaacagctg aaggcatcag tcatgctaca actaaaactg tagtatactc atcgcttgct
     1561 gtattaggtc ttgatttctt gttgactgca atgatgattg gagattggta aatgaaaaag
     1621 caacgttatg tagacattag cgtaggaata tttatgttgc ttgggctgct agcattatta
     1681 gtaatggcga tgaaagtgag taacattact gattttatgt ctgataaaac ttaccgtgtc
     1741 acagcagatt ttactgatat cggtggttta aaagttcgag ctccagtgac cgttgcaggt
     1801 gttcgtattg gtgaggtcag tcgaattgag ttgcagccag gtgagctcaa tgcaagagtg
     1861 actatgactt tgaatggtga taaaaagatt ccttatgaag atgcttctgc acgaattttg
     1921 accgaaggct tgcttggttc gaattatatt agtattgttc ccggttttga cgaggacggt
     1981 gacacagatc atccctattt acgtgatggg gataccattg cgaagactca ggaagcaatt
     2041 atccttgaaa atcttatagg ccaattatta tttaatataa aaaaataggt gaaccatgag
     2101 agtttttaaa acaatttttt tagttgtgtt gatgacgttg tctcaagcaa tggttgctca
     2161 gacctctcct atccctatgt tagaacgtgc agctaatcaa attatttcta ttctcaaaga
     2221 aaataaagcg cgtttaaaaa gtaatcctga gattatttac aaagcagtcg aggagaatct
     2281 tttacctaac gttgacgttg ctggtatgtc tcgttcagtc ttgggaagac aagcctggag
     2341 taaagctact gaagcggaaa gggttgaatt ctcaaaagca tttactcgct tggtgattcg
     2401 tacatattct agcccattgg cccaatattc cgatgaaact gtgcagtttt tacctttacg
     2461 cggctcttta aatagtcggt ttattcgtgt aaatagcgtg attgtgcgtt ctgcagggca
     2521 aaatatacca ttaagttata gtcttgtgtc caagaatggg aaatggaaaa tttatgatat
     2581 aagcgttgaa ggtgttagtt tgttgcaaag ttttagatcg caatttgcac aggcactgca
     2641 acattccagc attagtcaag tgattaagga aatgcaacaa aaacagatta agaaggcttc
     2701 ctgatcgtgg aaattaataa ctttaaacct ggcggtgagc ttacattcaa atcagtagta
     2761 tcggtccgtg acaagctgta taaggcttta atggaagata ccagagagag attttgcctt
     2821 gacttaagtg atgtgactca ttgcgatagt gctggacttg ctttaattat tgaagctaga
     2881 aaattatgta aacaaaataa taaggttttt gatgtaatag gaatatctcc tgaaacacaa
     2941 tctctggctg aattctgtgg agtgcagact attttacaaa gatcttgaaa caactctgag
     3001 tcagaaatat ttattattcc atagagctta tccctttaga gcgctagaat ctatcgacat
     3061 ttctactgtc ttggctttaa agcgttggtt ttctgtgttc cgttgcttaa taatggtttt
     3121 atatttctgc tacggtgctt aaaaatcaaa gttttgggtt tcaagccaga gaaaaattaa
     3181 cagactctag ttgtcctcct gaattgataa attcccatga attttgaggt aatgttgtgg
     3241 ttggtgaaac agtctaa
//
LOCUS       DACVWI010000267         3227 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.268, whole genome shotgun sequence.
ACCESSION   DACVWI010000267 DACVWI010000000
VERSION     DACVWI010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.268"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            54..1823
                     /locus_tag="JBH85_14205"
     CDS             54..1823
                     /locus_tag="JBH85_14205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HAU0947347.1"
                     /translation="MNQEISNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGR
                     DAIALAQTGTGKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQR
                     NVTIAVLCGGQEYGRQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADE
                     MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVK
                     SIEQRFLFASVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIH
                     GDITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIG
                     RTGRAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNIT
                     TRLNHEHVYSYKRIVEEYIKEHDVSAVDVAAALALLLHKDMPWRKELNMPKAASAFKE
                     ERARAGEKGLDLRGRFKEDRKSSFADRKGARGSKKDFAKDFSNERKKFNDGRKAVNQE
                     SVAQDLFRIDVGKIHGVKPGNIVGAIANEAGLQSRYITGLKIHEDHSTVRLPKGMPKE
                     VMKDLTKAWVCGRQLNLTLIGSA"
     gene            2173..2391
                     /locus_tag="JBH85_14210"
     CDS             2173..2391
                     /locus_tag="JBH85_14210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947348.1"
                     /translation="MKKKHEPGFFGRETKNIKDIESNRYDPDCPIRRADKSRGFSQKA
                     SSQFQLRIKEEVKEALDDIRNESAYKFN"
     gene            complement(2551..3177)
                     /gene="mavE"
                     /locus_tag="JBH85_14215"
     CDS             complement(2551..3177)
                     /gene="mavE"
                     /locus_tag="JBH85_14215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector MavE"
                     /protein_id="HAU0947349.1"
                     /translation="MTRFIMLSFVTGYRKSISCNRFSRNVVSPYFFMRTIIMTRFERN
                     FLINSLMFLETILSVDKKLDDAIHHFTQGQYENPRYQINSRITNADDWSKEDKLKFTS
                     AIAEAIALVSEKYENPTSETTEQIQSARNILLDNYVPLLTANTDPENRLKSVRENSSQ
                     IRKELIAKLKDEVPYKSQFENPYVLFPFVAATVAVAATAASVLFGNKP"
BASE COUNT         1002 a          568 c          683 g          974 t
ORIGIN      
        1 ttttatatta gttagccttt tcagaaagac gctttattat attcaggaac agtatgaatc
       61 aagaaatatc aaacttctct acttttaatt tttctaatgc tttaaataag gcgttagaag
      121 atatgaagtt tattacgcca tcgcctatcc aggctcaaac cattcctttg atattgcaag
      181 gtcgtgatgc cattgctctt gcgcaaactg gtacaggtaa aacagcggct tttgcattac
      241 caattttgca aaatttgtcc cctgagatat ctaccactca ggctttgatt ttagccccta
      301 ctcgtgaatt ggcaatccag gttgcagagc aatttgaatt attaagcaag taccaacgca
      361 atgtgacgat cgccgttctt tgcggtgggc aagaatatgg tcgtcaatta aaacaattgc
      421 gtagtggtgc gcaagtggtt gttggaacgc caggacgtat tctggaccat atcgataaag
      481 gcaccttgct cttaaataat ctgaagacat ttattctgga tgaagcagat gaaatgttgc
      541 gtatgggttt catcgaagat gtagaaacca ttttagaaaa actgcctgaa aaaaagcaaa
      601 tggcattgtt ttcagcaacc atgccctatc gaattcgtca aatagccaat acttatttga
      661 atgaccctgc ctcaattgaa atccgtatgg aaactgcgac ggtcaagtct attgagcaac
      721 ggtttttatt tgcttccgta catcaaaaac cggatgcgtt aatccgggtc ttggaagtgg
      781 aggattatca aggggttatc gtttttgtac gcactaaaag cagtactgag gaagtagcag
      841 aactattgca acaacatgga ttaagagcaa tggcaattca tggtgatatt actcagtctt
      901 tgcgtgagcg gattattgct caatttaaac aaggagcgat tgatattctg gtggcgacgg
      961 atgtcgctgc aagaggtttg gatgtcgagc gagttactca tgtgattaat tatgatatgc
     1021 cacatgataa tgaaacttat gttcacagaa ttggcagaac agggagagct ggccgttctg
     1081 gtgttacgat tttatttgta actcccaagg aatcgcgttt aatttccagc attgaacgcc
     1141 ataccaggca acgaattgag aaagttcaag ttcctaatga ccatatgata cagatggctc
     1201 gtcaacaaag attcatgtct aacattacta ctcgactgaa tcatgagcat gtgtattcct
     1261 acaaaaggat tgtggaagaa tacattaaag agcatgacgt atcagcagta gatgttgcgg
     1321 ctgctcttgc tttattgctg cataaagaca tgccttggag aaaagaatta aatatgccta
     1381 aagcagcttc agcattcaaa gaagagagag ctcgggcagg agaaaaagga ttggatttac
     1441 gtggtcgatt taaggaagat agaaaaagtt cttttgctga tcggaaaggt gcgcgaggaa
     1501 gcaagaaaga ttttgccaaa gacttttcta atgaaagaaa aaaatttaat gatggcagga
     1561 aggccgttaa tcaagaatca gtagcccagg atttatttcg tatcgatgta ggcaaaattc
     1621 atggagtcaa acctggcaac atagtagggg ctattgctaa tgaggctggc ttgcaaagcc
     1681 gatatattac tggtcttaaa attcatgaag atcactctac tgttcgttta ccaaaaggta
     1741 tgccaaaaga agtgatgaag gacttaacca aggcttgggt ttgtggccgc caactcaatt
     1801 taacattaat tggtagtgcc tgaatagctt agcagtaaag tgctgttagc gctatcaatt
     1861 ggcctttaat tattttgtaa aacgatttcg cctgtcaggg cgagatcata acattaagta
     1921 caataaatag cgcaaacaat ggttcacatt ttattatccc cgcacaggca gtaagctatc
     1981 tcttctctat agcaaaggga ggggtaagat ttgaaacaga ttcccactcg cgtaggaatg
     2041 atatgcatga cgtattattt aatcaaagta tgattttacc ctgaagacct acctttttcc
     2101 tggcttgttt ttctaattta atacctctaa tatggattgg tgttctgaaa tttaacactg
     2161 aggggccaaa ttatgaaaaa gaaacatgaa cccggttttt tcggtagaga aaccaagaat
     2221 atcaaagaca ttgaaagcaa tagatacgat cctgattgcc caattcggag agctgataag
     2281 tctcgtggat tcagccaaaa agcaagcagc cagtttcagc tacgaataaa agaagaagta
     2341 aaagaagcgt tagacgacat tcgtaatgaa tctgcctata aatttaatta accattattt
     2401 tatctctgag tgtaagagat cagctccttc ttgaaacgac cgtatttggt ccatcttgaa
     2461 cggaaataac cattggagta ctgatgatct gtatatttct gagtttaatg aagcctgaca
     2521 agaggcttca ttagtaataa aacactacct ttatggtttg ttgccaaaca acactgacgc
     2581 agcagtagct gctacggcta cagtggcagc aacgaatggg aaaagaacat aggggttttc
     2641 aaactgactt ttataaggta cttcgtcttt gagtttggca attaattctt ttcttatctg
     2701 actactattt tctctcacag attttaatct attctcaggg tcggtgttcg ctgtaagtaa
     2761 tggaacatag ttatccaata atatatttcg ggcactttgt atttgctctg tagtctcact
     2821 ggttggattt tcatatttct ccgaaacaag agctatggct tctgcaattg cagaagtaaa
     2881 ttttagctta tcctctttgg accagtcatc agcatttgtt atacgtgaat taatttgata
     2941 gcgggggttt tcatattggc cttgagtaaa atggtgaatt gcatcatcca gcttcttgtc
     3001 cacagagagt atggtttcaa gaaacatcaa gctattaatc aggaaatttc tttcaaatct
     3061 agtcattatt atggttctca taaagaaata agggctgacg acatttctgc tgaatcgatt
     3121 gcaagatatt gattttctgt accctgttac aaaagaaagc attatgaatc gagtcaggga
     3181 agtgtttaca ggatttacta taattaggtt tctgttttag atcaaca
//
LOCUS       DACVWI010000268         3214 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.269, whole genome shotgun sequence.
ACCESSION   DACVWI010000268 DACVWI010000000
VERSION     DACVWI010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.269"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            227..1465
                     /locus_tag="JBH85_14220"
     CDS             227..1465
                     /locus_tag="JBH85_14220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HAU0947350.1"
                     /translation="MNWKEKVKTKFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLA
                     VVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPATGKIVQSYLQQFTSQVSKLSIW
                     GVVFLIFTALLVMFTIERAMNKIWRVSSSRHGVSAFLLYWAIISLAPVLLGLSLAASS
                     YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILF
                     ESAKHAFAYYLIRYNTYELLYGAFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRR
                     GGKSLDGFSHALLWLHQLWIAQQHGKGLSFNDLVDASKQPFAVDVDEMINALIYHELI
                     HATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLSEQWRAAFKRHNEEL
                     KKSLDINLEELFKKTGTILK"
     gene            1462..1647
                     /locus_tag="JBH85_14225"
     CDS             1462..1647
                     /locus_tag="JBH85_14225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947351.1"
                     /translation="MSTCNGFSLFRWSTKQFSTTDFLSQWHIHSALDTSDKQQYASDL
                     TSHLKILSEKNKKTISN"
     gene            complement(1634..3208)
                     /gene="wipB"
                     /locus_tag="JBH85_14230"
     CDS             complement(1634..3208)
                     /gene="wipB"
                     /locus_tag="JBH85_14230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector WipB"
                     /protein_id="HAU0947352.1"
                     /translation="MKTQRIIHPNIDIRKFPEVNANFSMTDISMGDLHANALLFLNIL
                     VRQGIIAISPENYAKFAEIYILPELQADYWGTEAPVFSAGNKQERLEEIKKQYNALIA
                     QIKIINTKKLIRLIGDELVDRGVIDYFILKLLQALHDQGADFEILLSNHGIEFVEACE
                     LFKENGNKLVAKRLGNIQHGNSFHALQEAIAAGSISNEEVLNIYHQVYKKHLKIISYA
                     LDPDANEIKVFSHAGIGLNHIRGLTRKFKVPYSEESAVDLARTIDAINKKFAEKASAG
                     EIHTLYTHDMMYRGYAGEYLNSTDEVVAATVWGREYGDLIRTSKKFKVTFIHGHDSYD
                     PEKVEHVTLNNQLGQFQNNVGDLYLYATNGMRAVPTQCLNPDKKVQSLREKNRPDKPN
                     DYVVKVHHTKPSFFKTAHPKMTFPDSYKRIWDSTPGHSNITKIKALLKDYTKEDSILG
                     SFWGLIFTLHWGRHHVKSVHQIAQTQYTSVEAILSDLKALKPREGGSLDKRIKFIESQ
                     IITQRGDNPDLQFNLK"
BASE COUNT          922 a          621 c          562 g         1109 t
ORIGIN      
        1 aattggatga tcacaaaact gtaaagaagt attatgttat tgctaaattg tatgatgata
       61 taaataacct tttattcatt tgatttgctc atgagagttt agacaaacta catgaccgat
      121 ttaaaaactt ttttaacaaa aagatttgag tttttcgtaa atcctaacta tacaaaaacg
      181 agcataaaac gatatagtta tacaataaaa atcttgtatt taatccatga attggaaaga
      241 aaaagtaaaa actaaattct actcctgcga tcgatttgtt cggtttgtta tccaacattt
      301 catacaagac gattgtacct atattgcctc ggcattagcc tttacaagct tactggcagt
      361 cgtgccattg atgtctgtgg gtttggcaat attttcttca tttccagtat tccaaggttt
      421 ggcagagccg gtacagaatt ttatttttga caatttcgtt ccggccacag gtaaaattgt
      481 acaaagctat ttacaacaat ttacttccca agtctcaaaa ctctcaattt ggggtgtggt
      541 ctttctaatt tttaccgcgt tattggtcat gtttactatt gaacgagcca tgaataaaat
      601 ctggagagtg agttcatctc ggcatggtgt ctctgccttt ttactctatt gggctatcat
      661 ttctcttgcc ccggttttat taggtttgag cctggcagca agctcctatt tattctccat
      721 gccaatattg gcagatcatc gagctcctta cactattctt cactattccc ctttttttct
      781 ttcactcatc ggttttacct ttttgtacgt ggtggttccc aattgtcctg tcaaaatccg
      841 tcatgctttt tggggtggct tagttgccgc aatcttgttt gaatcagcta agcatgcatt
      901 tgcttattac ctgatacgct acaataccta tgagttgttg tatggggcat ttgccacagt
      961 acctatattt ttcatttggg tttattgggt atggattatt actttgttgg gcgctgaaat
     1021 cagttatgcc ttttcagtgc atcatcagcg tcgtggaggg aagtccctcg atggcttttc
     1081 acatgcgttg ctctggttgc accaattatg gatagcgcaa cagcatggaa aaggattaag
     1141 ctttaatgat ctggtggatg ccagcaaaca acctttcgct gtggatgtgg atgaaatgat
     1201 caatgctctg atttatcatg aactgatcca tgctaccgct gatgggcact acatgttaag
     1261 tcgtgatctc agtcacgtta ctctctatga tttaactcaa ttattacctt atcgcttgcc
     1321 aactcatctg gagctgcaat attccaaagc ctctctctct gaacaatgga gagccgcctt
     1381 taaaaggcat aatgaagaat tgaaaaaatc cctggatatt aatttggaag aattattcaa
     1441 gaaaacagga acaatactca aatgagcaca tgtaatggtt tcagcttatt caggtggtct
     1501 actaaacaat tctctacgac tgactttcta agtcagtggc atatacacag tgcccttgat
     1561 acctcagaca agcagcaata cgcaagcgat ttaacaagtc atttaaaaat tttaagcgaa
     1621 aaaaacaaaa agactatttc aaattgaatt gtaaatctgg attatcaccc ctctgagtta
     1681 taatttgtga ctcaataaac ttaatgcgtt tatccagtga accgccctct cttggcttca
     1741 gtgctttcaa atccgaaaga atagcttcta ctgatgtata ttgggtttgc gcaatctgat
     1801 gcacggattt gacgtgatgt cttccccagt gcaatgtaaa tattaatccc cagaaagaac
     1861 ccaaaatact gtcttccttg gtataatctt taagtaatgc cttaattttg gttatattgg
     1921 aatgtcctgg tgtgctatcc catattcgtt tgtagctgtc cgggaatgtc atcttgggat
     1981 gagctgtttt aaaaaatgat ggttttgtat gatggacttt tacaacataa tcattgggtt
     2041 tatctggtcg atttttttcc cttaggctct gaactttttt atctggattc aaacattgtg
     2101 ttggaaccgc cctcatgcca ttggtggcat acagatataa atcacctaca ttattttgga
     2161 attgccctag ttgattattt aaagtgacat gttctacctt ttcaggatcg taactatcgt
     2221 ggccatgaat aaaggtgact ttaaattttt tagacgttcg aatcaaatcc ccatattcac
     2281 gtccccatac ggttgcggca accacttcgt ctgttgaatt caaatattca cctgcataac
     2341 ctctatacat catgtcatgg gtataaagcg tgtgaatttc tcccgcagat gctttttctg
     2401 cgaatttttt gttaattgca tcaattgttc tagccaaatc aacagccgac tcctctgaat
     2461 aaggtacttt aaattttctg gtaagtcctc gaatatgatt taaaccaata ccagcatgac
     2521 taaacacttt aatttcattt gcatctggat ccaatgcgta agaaataatt ttcaagtgtt
     2581 ttttgtaaac ttgatggtaa atatttaata cttcttcatt tgaaatcgaa ccagctgcta
     2641 ttgcttcttg caaagcatga aatgaattac catgctgaat atttcctagt ctttttgcta
     2701 ctaatttgtt tccattttcc ttgaatagtt cacaggcttc gacaaactca atcccatgat
     2761 ttgaaagtaa tatttcaaaa tcagcacctt gatcgtgcaa agcttgtaat aattttaaaa
     2821 tgaaatagtc aataacaccg cgatctacta attcatcacc tatcaagcga atcaattttt
     2881 tagtattaat aattttgatt tgcgctatta atgcattgta ttgtttcttg atttcctcca
     2941 aacgctcctg tttatttcca gcgctaaaaa caggtgcttc ggtcccccag taatctgcct
     3001 gaagctctgg caaaatataa atttcagcaa atttggcata attttcggga gaaatagcaa
     3061 ttattccctg gcgaacaaga atattgagga aaagcaaagc attagcatgc aaatctccca
     3121 tgctaatatc ggtcatggaa aaatttgcat ttacttcagg aaactttcta atatcaatat
     3181 tgggatggat aattcgctga gttttcattt attt
//
LOCUS       DACVWI010000269         3203 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.270, whole genome shotgun sequence.
ACCESSION   DACVWI010000269 DACVWI010000000
VERSION     DACVWI010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.270"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..441
                     /locus_tag="JBH85_14235"
     CDS             <1..441
                     /locus_tag="JBH85_14235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947353.1"
                     /translation="HKSKKYFAQSDAIDLILNNFENEINSIGAYYAPAKQRAIELLDT
                     LRKYKEEAFNDPSREKLISFAQNTKRAIQEATPILQKDLGWGDYLANLAKQLVNAVTF
                     AVAYAVTFGTTGHQGFFALKSSLAVSQSQNLDEELNSKLSQNNC"
     gene            651..1676
                     /locus_tag="JBH85_14240"
     CDS             651..1676
                     /locus_tag="JBH85_14240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947354.1"
                     /translation="MRRSKAMQIPKKRTQILTISESSKEDLDVVSEYSDELDVSPNKE
                     TSKTNSKKLESTARKEQIKKLEGELYSHIQDAIELEEESFAEFSINTGRPSNYLFRFV
                     SEKEYLAILENLNQGKRIFGNKKKVFEEEDEKISTKAKGETFFAFDLKYAQKYFNKGT
                     RRDGVMLAIELLEEADTKLLSNSEIVRRIGDDPGMAGGRWAKCKKVKPGERGIVVVKC
                     EGVGSCKYPYTLGFREGEEGVSPFDVLFELTRSVKVLNKNGSCKTIYHYSVPTPKEKE
                     LINIVEDAENGIDEIHSDEFLSVVSSSPSSRFGFFTNKELSGISGLVNKAPEHIIPPS
                     DNTFSHH"
     gene            1842..3167
                     /locus_tag="JBH85_14245"
     CDS             1842..3167
                     /locus_tag="JBH85_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HAU0947355.1"
                     /translation="MSALYYNLNNHYVSHVIHSPEKRANRDNNPEKIMKKPLDTTEQN
                     RIAALYELKILDTPADERFDRIIRLTSGYLSVPIAFISFIDSKHQWFKSSCGIGLNKI
                     SRNDSFCHYTIQQSKPMIIPDALLDERFCNNPYVTNSPNIRFYAGFPLSTVDGFNVGT
                     LCAIDKKPRNLDETEIQILKDLATLAEDQVNLLDISLLERAVREKNISLTKAKKELEM
                     RNNFIRKVFGSFMSDEIVAALLESKSELKLGGEERKITILFSDLRNFTTLSEHFPADK
                     IVAALNNHYGKMVDVIEKYNGTVDSFIGDAIMVVFGAPHSGGDDAYRAIACALEMQAT
                     MQEVNAMNRNSSLPELAMGIGINTGYAIVGNIGSQKRMQYSAIGSPVNLASRIQDLTL
                     GGQILISEATYQEANHSLELNGHLRVKVKGIAAPITIYDVVGLDKKSDS"
BASE COUNT         1085 a          515 c          644 g          959 t
ORIGIN      
        1 cacaaaagca aaaaatactt tgctcagtcc gatgcaattg atctcatttt gaataatttt
       61 gaaaatgaaa ttaactctat tggtgcttat tatgctcctg caaaacaaag agctatagag
      121 ttgctggata ctttgagaaa atataaagag gaagcattta atgatccaag cagagaaaaa
      181 ctaatctctt ttgcgcaaaa tacaaaaaga gcaattcagg aagcaacacc aatactgcaa
      241 aaagatttag gttggggaga ttatttagcc aatttagcga aacaattggt taatgcagtg
      301 acttttgctg tggcttatgc tgtaactttt ggaaccaccg ggcatcaagg cttttttgct
      361 ttgaaatctt ctctggcggt tagtcaatct caaaatcttg atgaggaact caatagcaaa
      421 ttaagtcaaa ataactgtta gggaataggc cagatgtaga atgctaatgg gcaagacttt
      481 atttttgctg cccaagcatt cttcttagat ctaatgtatt tcgattcggt aattttgatt
      541 tagaaatgaa agattgcaat ccatttcatt ttgctgataa tgtgcaaaat agattgtgtg
      601 agaacaatat aagcacatat tgtatatcgt aacgatgtta ggagagttag atgcgtagaa
      661 gtaaagcaat gcaaatacct aaaaaaagaa cacaaatttt aactatttca gaatcaagta
      721 aagaagattt ggatgttgta tccgagtatt ctgacgaact ggatgtttct cccaacaaag
      781 aaacaagcaa aactaacagt aaaaaactgg agagtactgc ccgtaaagaa cagatcaaga
      841 aattggaagg agagctttac agtcatattc aagatgctat cgaattagaa gaagaatctt
      901 ttgcagaatt cagcattaac actggaagac ctagtaatta tttatttcgc tttgtcagtg
      961 aaaaagaata tttggcaatt cttgaaaatt taaatcaagg aaagagaata tttggtaaca
     1021 agaaaaaagt atttgaagaa gaggacgaaa agatatcaac taaagcaaaa ggggaaactt
     1081 tttttgcttt tgatcttaaa tatgctcaaa aatatttcaa taaaggtaca aggcgtgatg
     1141 gagtgatgct tgcgatagaa ttgctcgagg aagctgatac caaactatta tctaatagtg
     1201 aaattgttag aaggatcgga gatgatcctg gaatggctgg aggccgatgg gcgaagtgta
     1261 agaaagtaaa acccggcgaa agggggatag tagtagtcaa gtgcgaaggt gttggctcat
     1321 gtaaatatcc atatacctta ggttttagag aaggggaaga gggtgtaagt ccttttgatg
     1381 tactatttga gttaacgcgc tctgtaaaag tactgaacaa gaatggcagt tgtaaaacta
     1441 tttatcatta ttctgttcct acaccaaaag aaaaagagct tataaatatt gtggaagatg
     1501 ctgaaaatgg tatagacgag attcatagtg atgaattttt gtcagttgtt tcaagttctc
     1561 cttcatcacg ctttggtttc tttacaaaca aggagctctc gggtatttca ggattggtaa
     1621 ataaggcacc ggaacatata ataccaccct ctgataatac cttctcgcat cattaaatca
     1681 ggttaaattt ttaaggcttt agacgggcaa ttaaatacta tttatttgcc cgtttctgcg
     1741 tatcccctcc ataacaaggg ttagccacat acaagtaacc catcaacttt atttccattg
     1801 ctcaatacaa tttacttatt cgttggttta aaccaattaa tatgagcgca ttgtactata
     1861 atcttaataa ccactatgtc tctcatgtta ttcattcacc tgagaaaaga gccaatcgtg
     1921 ataacaatcc tgagaaaatt atgaagaaac ctttggatac tactgaacag aatcgcattg
     1981 ctgcattata cgaattaaaa attctggata caccagcaga tgaaagattt gatcgaatta
     2041 tccgactcac ttcgggttac ttatcagttc ctattgcctt tatttctttt attgattcta
     2101 aacaccaatg gtttaaatcc agctgtggca taggccttaa caaaatatcc cggaatgatt
     2161 cattttgcca ctacaccatt cagcaaagta aaccgatgat tattccggac gccttgttgg
     2221 atgagcgatt ttgtaataat ccctatgtga ctaattcacc aaatattcgt ttttatgcag
     2281 gatttccatt atctacagtt gatggtttta atgtgggaac actatgcgca atagataaaa
     2341 aaccacgtaa tttagacgag actgaaattc aaattttaaa agatttggca actttggcag
     2401 aagatcaagt caatctgctt gatatttcgc ttcttgagag agctgtacga gaaaaaaaca
     2461 tttcgctgac aaaagctaag aaagaacttg aaatgcgtaa caattttatt cgtaaagtat
     2521 ttggtagctt tatgtctgac gaaattgttg cagcacttct tgaatcaaaa tcagagttaa
     2581 aattaggggg ggaggagcgc aaaattacaa ttttgtttag cgacttaaga aattttacta
     2641 ctctgtcgga gcattttcct gcggataaaa ttgttgctgc gcttaacaat cattacggaa
     2701 aaatggttga tgtcatagaa aaatacaatg gcactgtcga ttcctttatt ggtgatgcca
     2761 ttatggtggt atttggagca ccacattctg gaggggatga cgcgtacaga gcgatagctt
     2821 gtgcattaga gatgcaggca accatgcaag aggtgaacgc aatgaatcgc aacagcagtt
     2881 tacccgaatt ggcaatgggc atagggatta atacaggtta tgctattgta ggtaacattg
     2941 gttctcagaa acgtatgcaa tatagtgcaa ttggttctcc ggttaatctg gcatcacgca
     3001 tccaagatct gactttgggg gggcaaattt taatttctga ggcaacttac caggaagcta
     3061 atcattctct tgagttaaat gggcatctca gagtaaaagt taagggaatt gctgctccta
     3121 tcactattta tgatgtagtc ggtctggata aaaaatcaga ttcatagacg tgttaatatc
     3181 actttttaaa atcaagagcc aaa
//
LOCUS       DACVWI010000270         3129 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.271, whole genome shotgun sequence.
ACCESSION   DACVWI010000270 DACVWI010000000
VERSION     DACVWI010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.271"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            31..2091
                     /gene="ravM"
                     /locus_tag="JBH85_14250"
     CDS             31..2091
                     /gene="ravM"
                     /locus_tag="JBH85_14250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavM"
                     /protein_id="HAU0947356.1"
                     /translation="MKYFLKLSRQHSSNQKKRTQPAQFEDHHLRIRQPQYAPITIDLV
                     GSVRFIFTFSLFCFRAIAGLLTGAISRKNLFDFVFNRTKTGLTGSIEIITVRRRLTKA
                     TQKIQEITPQKSLLERESEEPSISTNTKPTIKPNTTHKQNVFFTKSEEKSETKQFKAV
                     ESHDFNNSEELMAFMAKINELIAQDEAMASPKDENESSSTVGEEYIEKLIEIMKNSEL
                     LKHEFWSRLDQMTYKDIQLFVSKLSPTKEKGKFGSSDLDYLWRYFNGFEFEPSKRENR
                     KDKFAVMLEALSEEQLKASFDSSDFLSLLNKDYYIETAANTLKRKQLALFASDSKRHD
                     ILNLMIKKLKPSAYLLGKLASVMPYATTKIKIALIDQIAHLPHSASFKIELAKLAEHH
                     IGMNTQTYIKRYQSLPALPSNTTHSKPPLSKWASVPAVSKPIYTNIPVAKEDWTDEAF
                     EAFLRELNATTYLINEKKIIDDLNSLPDHRIKMIIEKASSPDYKDMLKHFWMIESKTI
                     NHRSFIENRKNRLKIILENLSESQLKSSIKDNKFWDIFRNTQEPYCKMAAKVLSPRQF
                     EIIISNATLERHADFAVIITQIKKDSSADKERLQQIIEAIIPHTTPWFALALERQIKG
                     LLTSDKSLFEKFSTDLKKYLSKSLERPEVSLKYRRDRDLNRRAISHLLTEPLENSYKA
                     SFSL"
     gene            2330..>3129
                     /locus_tag="JBH85_14255"
     CDS             2330..>3129
                     /locus_tag="JBH85_14255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0947357.1"
                     /translation="MLKRVLNTAKAKQPISTTGIFAHTYYWLTSPAGDQSYQNPNYKN
                     EEDNNTGTAIYFIHGTADQPAAFKRVAERLIDTGLPDEICSLNLLAFDQRYQGKSIKF
                     FAEQLKNKIKVNQHQRVILMAHSRGGLVASYFAEFLAKEASIDVPLVITMGTPFNGSY
                     LAVKPLSWFSDSIREMEINSEFLAQLKQEIVEHSVSAYHFFIAKEDAIVPGESGYIKD
                     YVDKYPESLHILDRHGHLSIMSSHRLVSHISSLLHDYIDDYQNDTEEV"
BASE COUNT         1119 a          606 c          500 g          904 t
ORIGIN      
        1 aatttaacca tacggatatt agttaatata atgaaatatt ttttaaaact gtctcgccaa
       61 cattcctcaa atcaaaaaaa aagaacccag cctgctcaat ttgaagatca ccatttaaga
      121 attcgtcaac ctcaatatgc ccctatcact attgacttgg ttggtagcgt aaggtttatc
      181 tttacctttt cgttattttg ttttagagcg attgctggtt tacttactgg tgcgatttct
      241 cgaaaaaatc tttttgattt tgtatttaat agaacgaaaa ctggccttac aggttcaatt
      301 gaaatcatta cagtcagaag aagattaaca aaagcgaccc agaagataca agaaataact
      361 ccccaaaaat cattattaga aagagaatca gaagaaccgt ctatttcaac caacacgaaa
      421 ccaactatca aacccaatac tactcataag cagaatgtat ttttcacaaa atctgaagag
      481 aaatcagaaa caaaacaatt taaagctgtt gaatcccatg atttcaacaa ttctgaagaa
      541 cttatggctt ttatggcaaa aatcaatgag ctcatagcac aagacgaggc aatggctagc
      601 ccaaaagatg agaatgagag ctcatctacg gtaggggaag aatatattga aaaattaatt
      661 gagataatga aaaactcaga attattaaaa catgaatttt ggagtagact ggaccagatg
      721 acttataaag acattcaatt atttgtcagt aaacttagtc caactaaaga aaaagggaaa
      781 tttggctcaa gtgacctgga ttatttatgg cgttatttta atggttttga atttgagcct
      841 tcaaaaagag aaaatagaaa agataagttt gcagtgatgc ttgaagccct ttcagaagaa
      901 cagttaaagg cttcttttga ttcgtctgat tttttaagcc ttttaaataa agactactac
      961 attgagactg cagctaacac attaaaacgt aaacaattgg cattgtttgc ttcagatagc
     1021 aaaagacatg acattctgaa tttaatgata aaaaaactga aaccaagcgc ttatttgtta
     1081 ggcaaacttg cttctgttat gccttatgcc actacaaaaa ttaaaatagc cctgatcgat
     1141 cagattgccc atttacctca ttccgcttct tttaagattg aacttgcgaa attagctgaa
     1201 caccatattg gtatgaatac tcaaacctat ataaaacgtt accagtccct acctgccctc
     1261 ccatccaata caacccacag caaaccaccc ctttcaaaat gggcttctgt acctgctgtc
     1321 tccaaaccaa tatataccaa tatccctgta gcaaaagaag attggaccga tgaagccttt
     1381 gaggcattcc tgcgtgaact gaatgcaaca acctacctca tcaatgagaa aaaaataatt
     1441 gatgatttaa acagcttacc agatcacaga attaaaatga ttatagaaaa agcctcttca
     1501 cccgattata aggatatgct gaaacacttt tggatgattg aatccaagac aataaatcat
     1561 agatctttca tagagaacag aaaaaatcgc ctgaaaatta ttttagaaaa tttatcggaa
     1621 tctcaattaa aaagttccat aaaagacaac aagttttggg atatttttag aaacactcaa
     1681 gaaccttatt gtaaaatggc tgccaaagta ttatccccca gacaatttga aataatcatt
     1741 tctaatgcca ctctcgaaag acatgccgac tttgcagtaa tcattactca aattaagaaa
     1801 gacagcagcg ctgacaaaga aagactgcaa caaattatag aagcaatcat tccccacact
     1861 actccatggt ttgccttagc tttagaacgc caaataaaag gtttattgac aagtgataaa
     1921 tccttgttcg agaaatttag cactgattta aaaaaatacc tcagtaaatc gctggaaaga
     1981 cccgaagtta gtttaaaata cagaagagac agagatctaa atcgacgtgc tatttctcat
     2041 ctcctgacag aaccacttga aaactcttac aaagcgtcct ttagtcttta aagatactct
     2101 actaccttaa gagctctctg cttttgacca gtaaggcacc aattacaaaa aaccaataga
     2161 gacgttaacc aaatcgcaat tcattcataa ttcattgaca ataactgccc ccgataactc
     2221 tttaaagcac agtttataat tgactcatat taagctatat tattgagaaa ttattgacag
     2281 tatccgactt tcggaactcg acgctccaca ataaaaaagg aatttaacta tgttgaagcg
     2341 cgttcttaat actgcaaaag ccaaacaacc catttccacc acgggtatat ttgctcatac
     2401 ttattattgg ttaacttctc ctgctggcga tcaatcctat caaaatccta attacaaaaa
     2461 cgaagaagac aacaacacag ggacggcaat ctattttatc catggtacag ctgatcaacc
     2521 agcggcattt aagcgtgttg ctgaacgttt gatcgatacc ggtcttcctg atgaaatttg
     2581 ctctctgaat ttactagcct ttgatcagcg ttaccaggga aaaagtatca aattttttgc
     2641 tgaacaactc aaaaataaaa taaaagttaa tcagcatcag cgagtcattt taatggcgca
     2701 ctccagagga gggctagttg cttcttattt tgcagagttt ttagcaaaag aagcctccat
     2761 tgatgtaccg ttagtaatta caatgggcac cccgtttaat ggttcttacc ttgctgtaaa
     2821 accattgtca tggttttctg attctattag agaaatggag attaatagtg aatttcttgc
     2881 acaacttaaa caagagatag tagaacactc cgttagtgcg taccattttt ttattgcaaa
     2941 agaagatgcg attgtacctg gagaatcagg gtatataaaa gactacgttg ataagtaccc
     3001 agagtcgcta catattttag atcgccacgg tcacctttcc atcatgtctt ctcatcgttt
     3061 ggtatcacat atttccagtt tactccatga ttatattgat gattatcaaa atgatacaga
     3121 agaagtaaa
//
LOCUS       DACVWI010000271         3124 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.272, whole genome shotgun sequence.
ACCESSION   DACVWI010000271 DACVWI010000000
VERSION     DACVWI010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.272"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            13..539
                     /locus_tag="JBH85_14260"
                     /pseudo
     CDS             13..539
                     /locus_tag="JBH85_14260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213948.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(716..2941)
                     /locus_tag="JBH85_14265"
     CDS             complement(716..2941)
                     /locus_tag="JBH85_14265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAU0947358.1"
                     /translation="MAESKLEIVNKTEREESVILDGNGILRCYNMFPTQFGSIEEMID
                     YLPQLQAMGFNAVWINPVQTAGDVQGLFKRDKTIGVRAYNEVTRSLYAMTDCDLISPY
                     FNPLPPNVDPKLKKQLDMEAMQKFTSEARNNGLVPMFDLVLNHVAADSRHRKEHPEWF
                     QKDVHPDFKDAIAFDYSDPQIRDEIIEQFWKPYIYKYMIDYGFEGVRIDAVGYLNPEL
                     RKQIYAYIYDLAEQFNKPKPVILDELLFSGSQKLTDVVDGLLLPEKGPTHITRGTYYA
                     QRDGYGGLPGWCKEEEGVKAQVVFLDKQKKLHPHAKGGCIAFSGNHDHNSLAMTILEE
                     MAEHRLANHHTLHGAQEKFKHERSYDYDEALESVLRYSFVKDIQNEILSGNESTIKEV
                     ETRMREKIAFCALTSSGGWYALSGDETGDLLAKPVFRRVHALDQTYYAQRTHIIFDKK
                     YPDNKVAMEVLTEMAIENIQKEKAGSIYNSLQHDKQSQERLLVPYLETLQNQINCGDT
                     VVCKAFQEKLAQKNITIGFTDENYSPDPRTPQNGWNGQHDMRKFMFEINSILSSLPSS
                     NMGFWSEVIPIQSKPGLLAVVRKNGLGLSSDTDIAIVNMDPSQKVELTRDDIHQLACN
                     FQKRVIPEYTYYNDGKDKQYNWHTNNPDFNMAYHTVMSCIEAKRIHVDDSIKTNFPVH
                     SANPYGMFSKKQSSKMNIAKIAKMSGEDTTLIEKGTNDTEGIIHDDEQIQPTITVENK
                     K"
BASE COUNT          948 a          616 c          518 g         1042 t
ORIGIN      
        1 taaaggctag tcatggctag tgatacccct ttttcggact taagagaaaa aatgttaaat
       61 ctctatgatc aagcagaaag gaaccaattc cgtgaacctg tatttagaga ccaatttcag
      121 ggtgctaagc ttgatgatgt tactatttct cgagcaagtg taaaatttca atctcagaag
      181 accagcgcgc tcatttacaa gatttatttt tagcttattt agaagatcaa gcatccagca
      241 tttataaaga atattatgat aaaaaatttg gctcaggatc taataacgcc accagctcat
      301 tgcttgaaca atttgagtca aaaaaagata caacccttga aaaaattcga gcggttttgg
      361 ataaatgtgt aacagaaaac aaagaagagg attattggtt tactaatgct gtaagaggaa
      421 tccttgtaac taacgctttt gctatttccg aaagctcaag tgaatcctac caatcagaat
      481 tagaacagag aatcagcaaa ctaattccac ctcctggcaa tacaaatgag gaaaaataac
      541 aaaagattta cagcccctag ttgttagatg aaataggtat gacttagaca ccaattcata
      601 ttaacctaaa cttactattt atacggtctt tgtaattagt tatattgcag agtatccgat
      661 ttatcaaaat aatatcctgt caccaagttg aaaccacttt tattacagta cttctttatt
      721 ttttgttttc tacagttata gtgggttgaa tttgctcatc atcgtgtatg ataccctcag
      781 tatcattagt acctttttca attaaagtgg tatcttcccc agacattttt gctatcttgg
      841 ctatattcat tttcgatgat tgctttttgc taaacatgcc atagggattt gctgaatgaa
      901 cagggaaatt agttttaatc gaatcatcaa catgtatcct tttggcttcg atacacgaca
      961 tcactgtatg ataagccata ttaaaatcag gattatttgt atgccaatta tactgtttgt
     1021 ctttaccatc attgtaataa gtatattcag gaattactcg tttctggaaa ttacaggcta
     1081 attgatgaat atcgtctctg gttaactcga ctttttgact tggatccata ttaacgatcg
     1141 caatatcagt atcagaactt aagcctagcc catttttacg tactactgca agcaaccctg
     1201 gttttgactg gattgggata acttcactcc aaaaccccat attggaactc ggcaaggaac
     1261 ttaatatact attgatttca aacataaatt tcctcatatc atgttggccg ttccaaccat
     1321 tttgaggtgt tctgggatcc ggactataat tttcgtctgt aaaaccaatc gttatatttt
     1381 tctgggcgag tttttcttgg aatgctttgc aaacaactgt atcgccacaa ttaatttgat
     1441 tttgcaaagt ctccagataa ggaacgagca atcgctcttg cgattgttta tcatgctgta
     1501 aactgttata gatgcttcca gctttttctt tttggatatt ctctatagcc atttcggtta
     1561 atacctccat agctactttg ttgtcgggat attttttatc aaagattata tgagtacgtt
     1621 gtgcataata ggtttggtcc agagcgtgaa cccttctgaa tacaggtttt gccaataaat
     1681 cacctgtttc atcacctgat agagcatacc acccgccgct tgatgttaaa gcacagaaag
     1741 ctattttttc acgcattctt gtttctactt ctttgattgt tgattcatta ccgcttagaa
     1801 tctcattttg aatatctttc acaaaagaat agcgcaggac tgactctaaa gcttcgtcat
     1861 aatcatagct cctttcatgt ttaaattttt cttgcgcacc gtgcaaagtg tgatgatttg
     1921 ccaaacgatg ttctgccatt tcttccaata ttgtcatggc taaggagtta tgatcatgat
     1981 taccggagaa agcaatacat ccgcctttgg catggggatg caatttcttt tgtttatcca
     2041 ggaatactac ttgagcctta actccctcct cctccttaca ccatccgggt aaaccaccat
     2101 aaccatctct ttgcgcataa taggtaccgc gagtaatatg ggttggccct ttttctggaa
     2161 gcaacaaacc atcaaccaca tcggtaagct tctgactccc actgaaaaga agttcatcca
     2221 atataacggg tttaggttta ttaaactgct ctgcaagatc ataaatataa gcataaattt
     2281 gtttgcgtaa ttctggattt aaatagccta cagcatcaat gcgaacaccc tcaaagccat
     2341 aatcaatcat gtacttataa atataaggct tccaaaattg ttcaataatt tcatctcgga
     2401 tttgagggtc actgtagtca aacgcgatag catccttaaa atcaggatgg acatcctttt
     2461 gaaaccattc aggatgttct tttctatgcc gtgaatcggc ggcaacgtga tttaaaacca
     2521 aatcaaacat cggtaccaaa ccattattgc gggcttctga tgtgaacttc tgcattgctt
     2581 ccatatccag ctgctttttc aacttaggat caacattggg agggagcggg ttaaaataag
     2641 gacttatcaa atcacaatct gtcatagcat atagacttct tgtcacctca ttataagctc
     2701 tgacgccaat tgtcttatca cgcttaaata aaccctgaac atcccctgct gtttgtacag
     2761 gatttatcca tacagcatta aatcccatgg cctgtaattg aggaagatag tcaatcattt
     2821 cctctatgct tccaaattga gtaggaaaca tgttataaca gcgtaaaatc ccattaccat
     2881 ccaggattac actttcttca cgttctgttt tattgactat ctctaatttt gattctgcca
     2941 taataatatg cccatatcat tatcttttag ataaaatata gtacatatct caggattatg
     3001 cctcttgagc ttaaaaagca agcaaacata gctgttgtat aatcaatagg gaaagttatc
     3061 ttgtaatttt tctcatcttt gaatgttttt gagcgtctaa attgatattg acagttttta
     3121 aata
//
LOCUS       DACVWI010000272         3102 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.273, whole genome shotgun sequence.
ACCESSION   DACVWI010000272 DACVWI010000000
VERSION     DACVWI010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.273"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..211)
                     /locus_tag="JBH85_14270"
     CDS             complement(<1..211)
                     /locus_tag="JBH85_14270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliQ"
                     /protein_id="HAU0947359.1"
                     /translation="MTPESVVSLFSDSVYIILLLLAVLILPGLIVGLIISMFQAATQI
                     NETSLSFIPKLFVTFLVLILAGPWLL"
     gene            complement(220..969)
                     /gene="fliP"
                     /locus_tag="JBH85_14275"
     CDS             complement(220..969)
                     /gene="fliP"
                     /locus_tag="JBH85_14275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095815.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HAU0947360.1"
                     /translation="MKIKSWLLILILFLLLPVAGHTDPLSFPVVTMQPGTDGSQSYSI
                     NLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTY
                     FVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHN
                     VPKSLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPL
                     IISLPFKIMLFVMVDGWTLVLGSLASSFALA"
     gene            complement(970..1380)
                     /gene="fliO"
                     /locus_tag="JBH85_14280"
     CDS             complement(970..1380)
                     /gene="fliO"
                     /locus_tag="JBH85_14280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliO"
                     /protein_id="HAU0947361.1"
                     /translation="MKSKVLHLAFLSLSLISSVGWSSTLSPNTISYGELIRIISGLLF
                     VLFIIIFLSWIVKRMHRVNFTSSKGFQTVASMILGPKEKVVLLKIGDRYLLIGVGSYS
                     INLICDFGNQLPEGFDADQKSSFADVLKSAIGKS"
     gene            complement(1377..1706)
                     /gene="fliN"
                     /locus_tag="JBH85_14285"
     CDS             complement(1377..1706)
                     /gene="fliN"
                     /locus_tag="JBH85_14285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HAU0947362.1"
                     /translation="MTQVNETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRT
                     KMTIRNLLQLNQGGIVALDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKA
                     ERIKRLK"
     gene            complement(1716..2783)
                     /gene="fliM"
                     /locus_tag="JBH85_14290"
     CDS             complement(1716..2783)
                     /gene="fliM"
                     /locus_tag="JBH85_14290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HAU0947363.1"
                     /translation="MLMTEKDVLSQEEIDALLDSVDESIDDETNDEELSSRDQPVRKK
                     PEDTTSQELNSNFDSDKKVAEEGVKTLNFTGQERIVKGQLPVLDKIYDRAVRLFAADI
                     YHLTARDFEIKQDPLLITKHKEFMRSLPNPSLIGIYKFKPLRGKGIILFDSTFVYDLV
                     DYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVTNLIHACEPIIQLDVTKFNDETN
                     PQLVNIAEPEEMLLVARFVLNFGKETGAFYFILPYSMLEPIKQQLELGASRPDDEIDP
                     NWINSLKEELMDVELTVSASMAETVSTLGQVMAWKVGDFVPLEINEEVTLDIEGTPSF
                     TATLGSANEKRALKVIKIIRY"
BASE COUNT         1040 a          620 c          501 g          941 t
ORIGIN      
        1 ttaataacca aggtcctgct aaaattagaa ccaaaaaggt gacaaataac ttgggtataa
       61 agcttaaact tgtctcatta atttgagtcg cagcctgaaa catcgatata attagtccaa
      121 caattaatcc cggtaatatc aacactgcca gtaatagcaa aatgatataa acactatcac
      181 taaacaacga aacgactgat tcaggggtca tatagcctcc taggcaagag caaaacttga
      241 agcaagtgaa cccaaaacca aagtccatcc atcaaccatc acaaacaaca tgattttaaa
      301 aggtaatgaa ataatcaagg gtgaaagcat catcatcccc atagccatca aaacactgga
      361 cacaacaaga tcaataatta aaaaaggtaa aaatagaata aagcctatct gaaatgcggt
      421 ttttaactcg ctagtaatga aagccggaat gagaacactc ataggaatct catctaaact
      481 ttttggtaca ttgtgagcaa atttttcaaa taaagataaa tcattttttc tcgtttgatt
      541 tagcataaac tgacgaagcg gcttttgtgc attggataat gccagagaaa aatcaatcct
      601 ttcattcata tagggctgta ttgctgtttc attaattttg ttgaatacag gtgacataac
      661 aaaataagtc ataaatagag caatgccgat taatatttga ttggtaggcg tctgagccat
      721 ccctattgcc tgccgtaaaa ttgacagaac aataattatc cttgtaaatg acgtcattgc
      781 catcagcaat cctggcaata cggtcaataa agtcataaaa attaaaattt gcagattgat
      841 actataagat tgcgaaccat cagttccagg ttgcattgta acaacgggaa aggataaagg
      901 gtctgtgtga cctgcaacag gtaataaaag aaataatatc aaaatcagta accaactttt
      961 aattttcatt tatgattttc ctattgctga tttcagcaca tcggcaaaag acgatttttg
     1021 atcagcatca aacccttcag gaagttgatt gccaaaatca catattagat taatggaata
     1081 tgaccctaca cctattaata aatatctgtc cccaattttc agcaatacaa ccttttcctt
     1141 tggacctaaa atcatacttg caacagtttg gaatccttta gatgaagtaa agtttactct
     1201 atgcatacgc ttcactatcc aagataaaaa aataataatg aataatacaa ataagagtcc
     1261 cgaaatgatt cttatcagtt cgccatagct gatcgtgttt gggcttaaag tagatgacca
     1321 accgaccgaa ctgattagcg aaagactcaa aaatgcaaga tggagtactt tgcttttcat
     1381 ttgagacgtt ttattcgttc agccttgcta acgatatcag ttaatctgac accaaattta
     1441 tcgttaacta caacgacttc accatgtgcg accaaagtac cattgactag cacatcaagg
     1501 ggatcaccag ccagcctatc aagcgctacg attcctccct gatttaattg cagtaaatta
     1561 cgaatagtca ttttggtacg gccgatttcg acagtcactg agacaggaat atctaaaatt
     1621 aattccaatt tctcattgcc aggatctgga ttcagtggat tcccttgatt taattgctct
     1681 gtgctggttt cgttcacttg agtcatcctt atcccctaat aacgtattat tttaataact
     1741 ttcaaagctc gcttttcatt ggcactgcct aaggttgcag taaagcttgg tgtcccttct
     1801 atatccagag ttacctcctc gtttatttcc aaagggacaa aatctcccac tttccaagcc
     1861 attacctgac ccagagtact gactgtttcc gccatagaag cacttaccgt caattcaacg
     1921 tccatgagtt cttctttcag agaattaatc cagttaggat caatttcatc atcaggtctt
     1981 gatgccccta gctccaattg ctgtttgata ggttcaagca tggagtaagg caaaataaag
     2041 taaaaagccc cggtttcctt accaaaattc aagacgaacc gcgccacaag caacatttct
     2101 tctggctcgg caatattaac taattgggga tttgtttcgt cattgaattt tgttacatcc
     2161 agttgaatta ttggttcaca ggcatgaatt aaattagtta ccagtttttt agttacgacc
     2221 tccataacac gaagttcagt agcagtaaaa tctgttttat ccttttgagc accaaactgg
     2281 ctatttccgc caaaataata atcgaccaag tcatacacaa aggtactgtc aaacaaaata
     2341 attcctttac cacgaagagg cttgaattta tagataccta tcaggctagg attaggtaaa
     2401 ctcctcataa actccttatg ctttgtaata agtagcggat cttgtttaat ttcaaaatct
     2461 ctagccgtta aatgataaat atctgctgca aacagacgaa ctgccctgtc ataaattttg
     2521 tctaataccg gaagctgtcc tttaacaata cgctcttgtc cggtaaaatt aagtgttttg
     2581 actccttctt ccgctacttt tttgtcagaa tcaaaattag agtttaattc ctggctggta
     2641 gtatcttctg gttttttacg aactggctga tctcttgaac tcaattcttc atcattcgtt
     2701 tcatcatcaa ttgactcatc cactgaatcc agtaatgcat cgatctcttc ttgtgataac
     2761 acatctttct cagtcataag caatccattc gcatctcaac cagattttca aagttatttt
     2821 aaaattgaag tgttgattag tttaaaatta gctcaatcaa tcagtaacaa ctatagaatg
     2881 gttatgttta tgcaaagccc gtgccatcca agaaatatat caataaatca aatagatagt
     2941 gtaataatca aatcttgatt agctcattta attagactcc gccaatgttt tgacgtaaaa
     3001 atcataaggt ttatattgat aggacttacg aaaaactcca aagtcgaggc agaaaatgtt
     3061 ttggcgagag gatttagata aactaaatga ctgaattaaa aa
//
LOCUS       DACVWI010000273         3004 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.274, whole genome shotgun sequence.
ACCESSION   DACVWI010000273 DACVWI010000000
VERSION     DACVWI010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3004
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.274"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..352
                     /locus_tag="JBH85_14295"
     CDS             <1..352
                     /locus_tag="JBH85_14295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HAU0947364.1"
                     /translation="FDDAIKKVTEELQKEGFGVLTNIDVSATLKKKLNQDMPPYQILG
                     ACNPQFAHHALEKEPSIGLLLPCNVVVRQDNTGIVYIEFMDPQAVLELVSNPEINQIA
                     SEVRKRLERVLNAL"
     gene            complement(367..2274)
                     /locus_tag="JBH85_14300"
     CDS             complement(367..2274)
                     /locus_tag="JBH85_14300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HAU0947365.1"
                     /translation="MGCSTCSSHKEPMPKLWHNPKVITATIAGLLLTIGFVGSYLALP
                     MIIANGFYIGAVLIGGYYFAREAIDEFIKEYEIGIEFLMSLAAIVAGIMGQWAEAATL
                     VFLYSISEAAEGYSGERARHAIRALMDLAPKTALIRRNNTEFRIPIEEIHIGDEFIVL
                     PGESLATDGEVISGHSSVNQAPITGESIPVEKTIGSKVFSATINGEGTLTVRATKKFA
                     DNTLSRIIFLVEKAQDKKGRSQRFIERFGNLYSPFILLAGILIATLPPLFGQPWQEWV
                     IRATVFIVAAAPCALVISIPITLVAALGTASRNGILLKGGLYLEQLVKIKVIALDKTG
                     TLTQGKPKVTDIIPLNNHTRNQILNAAATLESRSQHPMAQAILQQANEENIQYNPVEQ
                     FKSLTGSGVLGFINGKKFYIGNPKLFIDMGLLIETLTQEINKLQASGKTVVLLGTDKE
                     ILGLIAIADPLRPTARQMVSNLKLMGIERVVMLTGDNLITASSIGEQAGVDEVFSDLS
                     PEDKTRKIEELERRYGKVMMVGDGVNDAPALAAAHVGVAMGAVGTDVALETADVALMG
                     DNLLKLPYLIAFSRRTWNIILQNLGLSIIVISSLVVGAVTGYFTLPIAVLAHEISELI
                     VIASGLRMLKS"
BASE COUNT          975 a          596 c          502 g          931 t
ORIGIN      
        1 atttgatgat gcaattaaaa aggttactga ggaactgcaa aaagaggggt ttggagttct
       61 tacaaatatt gatgtgtcag caactctgaa aaaaaagtta aatcaggata tgcctcctta
      121 tcaaattctt ggtgcatgca atccccaatt tgctcatcat gctttagaaa aagaaccatc
      181 tattggtttg cttctaccct gtaatgtagt tgtacgccaa gataatacag gcatagtgta
      241 tattgaattc atggatccgc aagcggtatt ggaattggtc agcaatcctg aaattaatca
      301 gatcgctagt gaagtcagga aacgactgga gagggtatta aacgcattat aattactcct
      361 ctacggttaa gattttaaca tacgaagacc acttgcaata acaataagct cactgatttc
      421 atgagctaaa actgctatcg gcaacgtaaa ataacctgtt actgccccga caacaagaga
      481 gctaattaca attatagaaa gtcccaaatt ttgtaaaatt atattccaag ttcgacgact
      541 aaatgcgata agataaggta attttaataa attatcaccc attaaggcta catccgcagt
      601 ttctaatgca acatcggttc cgacagcacc catagcaact cctacatgag ctgctgcgag
      661 tgctggagca tcatttactc catcaccaac catcattacc ttaccataac gtctttctaa
      721 ctcttcaatt tttcgtgtct tatcttctgg tgataaatca gaaaatactt catcaacacc
      781 cgcctgttca ccaattgaag aggcagttat caaattatct cctgtgagca taaccacacg
      841 ttcaataccc atcaatttta agttagacac catctgcctt gctgttggtc ttagaggatc
      901 agcaattgca attaaaccga ggatttcctt atcagttcct aataatacta ctgtctttcc
      961 agaggcctgt aatttattta tttcctgcgt taatgtttct atcaataggc ccatatcaat
     1021 aaataatttt ggattgccta tgtagaattt tttcccattg ataaaaccaa gtacacctga
     1081 accagttaat gacttaaact gttcaacagg attatattga atattttctt cattggcttg
     1141 ttgcaaaatg gcttgggcca tgggatgctg ggagcgcgat tcaagagttg ctgctgcatt
     1201 taaaatttgg ttccgagtat ggttattcaa tggaatgata tcagtaacct tcggtttacc
     1261 ttgtgttaat gttcctgttt tatctagtgc aataactttt atcttcacta gttgctccaa
     1321 atataatcca ccttttagta atattccatt tcgacttgct gtgccaagag cagctacaag
     1381 tgtaatgggt atagaaatca ctagggcaca tggcgctgca gcaacaataa atactgtggc
     1441 acgaatcacc cactcttgcc aaggttgccc aaatagaggt ggtaaagtag ctatgagtat
     1501 tcccgccaaa aggataaatg gactatatag gttgccaaaa cgttctataa aacgttgact
     1561 acgccccttt ttgtcttgtg ctttttcaac aagaaatatg atacgagata atgtattatc
     1621 agcaaatttt ttggttgcac gaacagtaag agttccttca ccgtttatag ttgcagaaaa
     1681 aactttactc cctatagttt tttctactgg aattgactca cccgtaatag gtgcttgatt
     1741 aacactagaa tgtcctgaaa tgacttctcc atctgtagca agactttcac caggaagaac
     1801 aatgaattca tctccaatat gaatttcttc tatgggtatt cgaaattcag tattatttcg
     1861 ccggattaat gctgtttttg gggcaagatc catcaatgct cggatagcat gccgcgctct
     1921 ttcaccggaa taaccttccg cagcttcaga aatagaatac aaaaatacca atgttgctgc
     1981 ttccgcccat tgccccatga tacctgcaac aatggctgca agagacatca agaattcaat
     2041 accgatttca tattctttga taaattcgtc tattgcttcg cgtgcgaaat aatatccgcc
     2101 aattaatact gcgcctatgt aaaacccatt agcgataatc attggtaatg ccaaatatga
     2161 gcctacaaaa ccaatagtta ataataaacc agctatagtt gctgtaatga ctttgggatt
     2221 atgccacaac tttggcattg gctccttatg tgaagagcat gtcgagcagc ccatttattt
     2281 acactcctta ttcgtaattt ttttaaacac tgatgctata tgtcgcgtaa aagtaacggt
     2341 tgttagagaa ccatctctat catagatatt gaacagatcc atttactttg ttatttcaat
     2401 gttaccaagg gagtcaattt attgatgacc taaccaaaat actccatttt attattaata
     2461 cacttgctaa gctattttga tgttcctcca acaacaagca aaacatcatc aagaacttat
     2521 gacaattata tctcatcgat tagaaaatat tttaaacctt cattctctaa aaaaaagcat
     2581 tataaagaac tggaaggatg gattaaaaat gagttactgc caactaacgg atcgtattcc
     2641 gaagtgctag gccaattaat gaagcttaaa tgatactcca tgtaaaaaaa tagcaagcat
     2701 gataagaaaa ctcactaagg aaataataaa agataacttt tgcttatttt tttgaaaata
     2761 aatcataaga ctgaataaaa taatgagaaa aataacaaac atgcctaata cccaagcatt
     2821 tattatcact tttatcccta attctagtcg ttataataat catgctcatg ctgagctttg
     2881 ccatctgaac ctttatcatg gccactttca ggatgtgctc cagaagcagg ttgtgtgtga
     2941 gtgcatgaag ttaatccaaa tcctgaaata aaaataccta tcagtaagaa catcttaaat
     3001 cttg
//
LOCUS       DACVWI010000274         2990 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.275, whole genome shotgun sequence.
ACCESSION   DACVWI010000274 DACVWI010000000
VERSION     DACVWI010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.275"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..169)
                     /locus_tag="JBH85_14305"
     CDS             complement(<1..169)
                     /locus_tag="JBH85_14305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HAU0947366.1"
                     /translation="MTAGGTMTLKITFLGSGSSFAIGPENYQSNVLLELENDTLLIDA
                     GTDIKYSLRDQG"
     gene            complement(307..1095)
                     /locus_tag="JBH85_14310"
     CDS             complement(307..1095)
                     /locus_tag="JBH85_14310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HAU0947367.1"
                     /translation="MVLLLKCIEKIIDEYFAVIPRHTPEFENINGALIIAHRGAHNNA
                     RGIIENTLEAFQNAKETGCWGIELDVHLTKDKVFVVNHDPTLNRLWNKDIAIADLNFS
                     ELRALECRIPSLSEVVSQYGNSMHLFIELKTAIEEEEILVQTLQHLTPCKDFHLLTLQ
                     ETTFKKLCSFPRQSLLLVAVHNNVKKFCELSIKEGYGGVLGNYLLLTNRALKYLQDAN
                     QHFGVGFVDSKNSLYRELNRGVKWLFTNEAININQYLNDLKNRM"
     gene            1341..>2990
                     /locus_tag="JBH85_14315"
     CDS             1341..>2990
                     /locus_tag="JBH85_14315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HAU0947368.1"
                     /translation="MAIKVTKRGMDILRDPILNKGTAFSLQERDEFALHGLIPTTVET
                     LEQQVVRCLDAYSAKEDPLEKHIYLRALQDRNEVLFYRFIIDNLVHILPIIYTPVVGQ
                     ACEMFSHIYRQPRGVFLSYPERDKLDSIIQNIASTRSTKVIVVTDGERILGLGDQGAG
                     GLGIPIGKLSLYTSCGGIHPSNTLPIILDVGTNNKERLDDPEYIGWRHARISGKEYDD
                     FVDQFVQSIKRHMPHVLLQFEDFAQQHAYPLLERYKNQLCTFNDDIQGTASVAVAAIL
                     AATRVTNTPLKEHRVALLGAGSAGCGISEQLVHAMMNQGLSEEEARSRFYLVDRYGLL
                     HDEMTDLLPFQKGFVRSSTSLQNWKLEKKGEITLTDVINNAQPTILLGVSGQPNQFKE
                     AMIKTMLSYCERPIIFPLSNPTSRAEAIPQDLLNWTAGKALIATGSPFEPVVINGHKI
                     EIAQCNNSYIFPGVGLGVVAGQAKRVTDLMMMAAAVALSELAPAIRTGEGRLLPELNS
                     IREVSQHIARAVILQGIKEGHIEPMNNNKIDDSIKRTMWTPQ"
BASE COUNT          967 a          576 c          552 g          895 t
ORIGIN      
        1 atccttgatc tcgtaatgag tatttgatat ctgttcctgc atcgattaat aaagtatcgt
       61 tttctagctc taaaagcaca ttggattgat aattttctgg cccaatagca aaggatgatc
      121 cggaacctaa aaaagtaatt tttagagtca ttgtaccccc tgccgtcact cacgaaaatg
      181 tcccgacctt aaacctgcta tctttaaggt actaatcctt gctacatgat aaaatcgaac
      241 tgttaattta agactatgtg atgattattg aattgtcaaa aacaggcagg agtattgtca
      301 aaatgattac attctatttt ttaagtcatt taaatactga ttaatgttta ttgcctcatt
      361 agtaaagagc catttaaccc ctctatttaa ttctctatac agactgtttt tggaatcaac
      421 aaatcccacg ccaaaatgtt gattggcatc ttgtaaatat tttaatgccc tattagtcaa
      481 taataaataa ttacccagta cgcctccata cccctccttg atgcttaatt cacaaaattt
      541 cttaacgtta ttatgcactg caacaagcaa taaagattgc ctaggaaaag aacacaattt
      601 tttaaaggta gtttcctgta aagtcaataa atgaaaatct ttacatggcg ttaaatgttg
      661 cagggtttgc actaatatct cttcctcctc aatagctgtt tttaattcaa taaataaatg
      721 catggaattt ccatactgac tcactacttc agagagcgag gggattctgc actccaatgc
      781 ccgtaactca ctaaaattca gatcagcaat agcaatgtcc ttgttccata atcgatttaa
      841 ggtaggatca tgattaacaa cgaacacctt gtccttagtg aggtgtacat ccagttcaat
      901 tccccaacat ccggtctctt ttgcgttctg aaatgcttcc agagtgtttt caattatccc
      961 tcttgcatta ttatgagctc ctctatgcgc gattattaac gcaccgttga tattttcgaa
     1021 ttccggtgtg tgcctgggaa ttacagcaaa atactcatca attatttttt ctatgcattt
     1081 gagtaacaaa accaattatc ctaatagtcc aattttaatc attttatgcc ggcataaaat
     1141 aaaaggcaaa atacgctatt agcacaaaat cacaaaaatc gactaaacta gaaactatgt
     1201 gagaatgaca atacaacaat aaattagcat ttataaaatt tgtaaataac ttccatctta
     1261 aaatcaatga gttgaattga agttatttag aagtcctgat ttaaatttct cggttacaaa
     1321 tattcacaag gagtgttcta atggcaatca aagtaacaaa aaggggaatg gacatactaa
     1381 gagaccccat actaaataaa ggtaccgcat ttagcctcca ggaaagagat gaatttgcct
     1441 tgcatggttt aataccaaca acagtggaaa cccttgaaca acaagtagtt cgctgccttg
     1501 acgcttatag tgccaaagag gaccctttgg agaaacacat ttacttacgt gccttgcagg
     1561 accgaaatga agtacttttt tatcgtttta taattgataa tctggttcat attttgccca
     1621 ttatatacac accggttgtc ggccaagcct gtgaaatgtt ttcccacatt tatcggcaac
     1681 caagaggagt atttctaagt tatccagagc gagacaaact ggacagcatc atacaaaaca
     1741 ttgcgtcgac tcgttcaacc aaagtaattg ttgtcactga tggcgaacgg atcttggggt
     1801 tgggagatca aggagcaggt ggattgggaa ttcctatagg caaattgtct ctttatacca
     1861 gttgcggtgg tatacatcct tctaacactt tacctattat tctggatgta ggaaccaata
     1921 ataaggagcg tctggacgat ccggaatata ttgggtggag acacgctcgg atttcaggca
     1981 aagagtatga tgattttgtt gatcaatttg tgcaaagtat aaaacgccat atgcctcatg
     2041 tgctattaca attcgaagat tttgcacaac aacatgccta tcctttattg gagcgatata
     2101 aaaatcaact ttgtactttt aatgatgata ttcaaggaac tgcttctgtt gctgtagccg
     2161 ccatactagc agcaactcgt gttactaata ctcctttaaa ggaacatcga gttgctttat
     2221 taggtgcagg atcagcgggt tgtgggatca gtgagcagct ggtgcatgcc atgatgaacc
     2281 agggactttc tgaagaagaa gccagatcac gtttttattt agttgacagg tatggacttt
     2341 tacatgatga gatgacagat ctattgccat ttcaaaaagg atttgtccgt tcttctacca
     2401 gtctccaaaa ttggaaatta gaaaaaaaag gagaaatcac gttaacagac gttattaaca
     2461 atgcccaacc gactatactc ctgggggtgt ctggccaacc taaccaattc aaggaagcaa
     2521 tgatcaagac catgctaagc tattgtgaac gccccataat ttttccttta tcaaatccta
     2581 cgtctcgcgc agaagcaatc ccgcaagatc tgttaaattg gacagctggt aaagctttaa
     2641 ttgcaacagg cagtcccttt gagccagttg taattaatgg tcataaaatt gagatagctc
     2701 aatgcaataa ttcttacatt ttcccgggag ttggtcttgg agtagttgca ggacaagcca
     2761 aaagagtgac tgatttaatg atgatggcag cagcagttgc attaagtgag ctagcacctg
     2821 caatcagaac cggagaagga cgcttactcc cagaattaaa ttccattaga gaagtcagtc
     2881 aacatatagc gagagcggta attttacagg gtataaaaga gggtcatata gagccaatga
     2941 acaataataa aatcgatgat tctataaaaa gaacgatgtg gactccacaa
//
LOCUS       DACVWI010000275         2990 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.276, whole genome shotgun sequence.
ACCESSION   DACVWI010000275 DACVWI010000000
VERSION     DACVWI010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.276"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..2372)
                     /locus_tag="JBH85_14320"
     CDS             complement(<1..2372)
                     /locus_tag="JBH85_14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1449 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947369.1"
                     /translation="MQEKMILDKSNIINAIFSNLSADEIRKVKGISHAFYDRATEYLT
                     GHLENENFHLNRVIPPSDAIQREQKIKFCAKFLQTLIRSISNGEEGSSGQLYKFNNMM
                     EKIRRAVQSNLGLSRVQRETYETFHPIYVKLGAPNFPINDEGELDPGSIVYRTDHVKG
                     RDERKSSWLVLLKDDSNEDGLSICFDTKFRKYLLHIDGEGHVTSQLTLRWNAIYDDLL
                     PDTAMQQPLRSFTPWQRHAEANFFNGRSTNKILGLLTKNYPEIFNYDPTSYFKEEPVF
                     SVKLNRNAPKKLSTDKKNIYLTLDESFFKTPNGFETGLNRQPILAVIKTNSPLRGDCF
                     SVVPAIYEKQKLHILIKGHQQQTQVLDVFHANFKTGGLLSWELLDDVLIFGEPSTEYK
                     PALTDLNLLSDQQSELMSHVSTAPMVRGSGPGARQYWLNGFFKSTVYSEMIVIAEIFN
                     RRFMSTPLASLEQTLNHSDATKSFYRLQFSRQELEKAKEFVFQLAIPNEFSKQEDFDF
                     FYGGDGNKLEEITKLAILMLKRMVPKEFHHKIRIGINMCCPAASVENIGSGFGLRNKP
                     DFIERIVKAIKDADSNLKVEFKTLMLSHEDGYGDGDQISGNTKNISEIQNERLTRIVY
                     KTKANRLVYQGKPRNIETYNVDTVSCIIREVNTPKEFQFGYSGMVATITNHDINQLGY
                     KVVGEPHYSVQSILEKIKKQLGEVPTEFEVMLGRVLLGSAWVLQGRYASDAEILLHTL
                     LQAAIEQEWARGMGRYGIDIYQIQVLYNIRHITNDNYRNSLINKILNAQST"
     gene            complement(2758..>2990)
                     /locus_tag="JBH85_14325"
     CDS             complement(2758..>2990)
                     /locus_tag="JBH85_14325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947370.1"
                     /translation="CCQSNKINKEIKRSLLSPRQKDCAKLLLQGMSYKEIGKILQLSA
                     RTVETHVNQLKTKLGCDNKAELILQLNGMITR"
BASE COUNT          915 a          578 c          470 g         1027 t
ORIGIN      
        1 gtagattgag cattaagtat tttattaatt agagaattcc tataattatc attagttata
       61 tgtcgaatat tatatagaac ttgaatttga tatatatcaa taccatatcg ccccatcccc
      121 ctggcccatt cttgctcaat cgctgcctga agcagcgtat gtaaaagaat ttctgcatca
      181 ctggcatatc ttccttgtaa aacccatgct gagcctagca aaactcgacc tagcatcact
      241 tcaaattcag ttggaacttc ccctaattgt tttttaattt tttcaagaat actttgtaca
      301 ctgtaatgtg gctcaccgac aaccttataa cctaattgat ttatatcatg atttgtaata
      361 gtagctacca ttccgctata cccaaactgg aattccttag gtgtattgac ctctctaata
      421 atacatgaca cagtatctac gttataagtt tcaatattgc gtggctttcc ttgatacacc
      481 aatctattag ccttcgtttt ataaactatt cgtgtgagac gttcattctg aatttccgag
      541 atattttttg tattgccaga tatttgatca ccatcaccat agccgtcttc atgtgataac
      601 attaaagttt taaattcaac tttcaagttt gaatcagcat cctttatcgc tttaacaatg
      661 cgctctataa aatcaggctt attacgcaaa ccaaagcctg aaccaatgtt ttccactgat
      721 gcagcagggc agcacatatt aataccaata cgaattttat gatgaaactc tttgggcacc
      781 attcttttta acatgagaat agcaagcttt gttatttctt ctaatttatt gccgtccccc
      841 ccataaaaaa aatcaaaatc ttcttgcttg gaaaattcat tggggatagc caactgaaaa
      901 acaaactctt tagccttttc taattcctga cgactaaatt gcaatcgata aaagcttttt
      961 gttgcgtctg aatgattcag tgtttgctcc aaggacgcta acggtgtgct cataaaccgt
     1021 ctattgaaaa tttcagctat tacaatcatt tcactataaa ctgtgctttt gaaaaaccca
     1081 tttaaccaat actgtcgggc gccaggtccg cttcctctta ccattggtgc cgttgaaaca
     1141 tgagacatta actcggattg ttgatcggat aaaagattta aatcagttaa tgcaggtttg
     1201 tactctgtcg agggttctcc aaaaattaaa acatcgtcaa gcaactccca tgacaggagt
     1261 cctcctgttt taaaatttgc atgaaaaaca tcaagtactt gagtttgctg ttgatgcccc
     1321 ttaattagaa tatgaagctt ctgtttttca taaatggctg gtaccacaga aaaacaatct
     1381 cctctgagtg gggagtttgt ttttatcaca gccaatattg gctgtctgtt taaaccagtc
     1441 tcaaaaccat ttggcgtttt aaaaaaagat tcatctaaag ttaagtaaat attcttttta
     1501 tctgttgaca gcttttttgg agcatttcta tttaatttaa cgctaaaaac aggttcctct
     1561 ttaaaataag aggtaggatc atagttgaat atttccgggt aattttttgt taataacccc
     1621 aatattttat tggttgaacg tccattaaaa aaatttgcct cagcatgccg ctgccaggga
     1681 gtaaaagatc taagtggttg ctgcatagca gtgtcaggca ataaatcgtc ataaatagca
     1741 ttccatctaa gtgttaattg agaggtaaca tgaccttcac catctatatg gagtagatat
     1801 ttacgaaatt tagtatcaaa acaaatggaa agtccgtctt catttgagtc atccttcaac
     1861 aatactagcc atgatgattt tctttcatct ctccctttaa catgatcagt tcgataaacg
     1921 atgctgcctg gatcaagttc cccctcgtca ttaattggaa aattgggcgc tccgagtttg
     1981 acataaatag gatggaaagt ttcatatgtt tctcgttgaa cacgacttaa acccaggtta
     2041 gattgtacag cacggcgtat tttttccatc atattattaa atttatacaa ttgcccagat
     2101 gatccctcct ctccattaga tatactacga ataagtgtct gcaaaaattt ggcacaaaat
     2161 ttaatttttt gctctctttg tatcgcatca gaaggtggaa taactctgtt aaggtgaaaa
     2221 ttttcattct cgagatgacc tgtcaaatac tcagtggccc ggtcataaaa agcatgcgat
     2281 atgcctttga ctttcctaat ttcatccgcc gaaagattac taaaaatagc atttataata
     2341 tttgacttgt ctaatatcat tttttcttgc atttacaaca ttctcttttt gacgcgttat
     2401 cgcaatttca attcaccttc aattttttct gcacccaatg atcagtcttg aaataatatt
     2461 ttcaaaattt tataaattat gggcatagca aagaaaaaaa ctcgggcctt gccgtattcg
     2521 aatatcctct caagccatat ttacacgtaa atatgattaa gcttttttgt tcggggacta
     2581 tttctactca ttgataaagc cttacgtaga gacgagaagc aatgctgctg tccaattgta
     2641 aaaggaattg ggaatttaac tttattctgc atttaagtac tctcttgtat aaaaacataa
     2701 agaatactta aagtaacatt cagagaatat ccgtaaaatc acggataaaa tagctattta
     2761 tcttgtaatc attccgttca attgaagaat caactcagct ttattatcac atcccaattt
     2821 tgtttttaat tgattaacgt gggtttcaac agttctagct gataattgga gtattttccc
     2881 aatttcttta taactcattc cttgcaataa gagttttgca cagtcctttt gacgaggaga
     2941 aagaagggat cttttaattt ctttattgat tttgttgctc tgacaacaag
//
LOCUS       DACVWI010000276         2960 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.277, whole genome shotgun sequence.
ACCESSION   DACVWI010000276 DACVWI010000000
VERSION     DACVWI010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2960
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.277"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1461
                     /gene="glpK"
                     /locus_tag="JBH85_14330"
     CDS             <1..1461
                     /gene="glpK"
                     /locus_tag="JBH85_14330"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HAU0947371.1"
                     /translation="AIDQGTSSTRAMIYTLQGDLIANSQYPLTQYYPNSGWVEHDPEE
                     IWQKTLNAMRDVVSQVQGKAILCCGLTNQRETTLIWNKKTGECLAPAIVWQDRRTEEF
                     CYSLSEYSSMIQEKTGLLPDPYFSASKLNWLLKNNAQAQSLINQGDLAFGTIDSFLIW
                     RMTKGASHATDITNASRTMLFNIHDEKWDKQLLELFSISESVLPAVYSSDNHFGVIDK
                     EWLGVEIPITGVAGDQQAALIGQGCFNGGMVKATFGTGGFLLLNTGDKPVFSKHKLLT
                     TIAYKIKEKTVYGLEGSIYHAGTTVKWLRDEMKLISHSAETEVLARSLDSNNGVYLVS
                     SFTGLGAPHWLSITGTAIIGVSRSTNRAHFARAALEGVCYQTRDVLTCMRDDSQLDLT
                     LLRADGGMAVNQWFLQFMADQCQLTIQKPKDIETTAKGAAVLAAIGSGLFDSVSSVNK
                     IWDVENEFQPFREREVVEKDFRGWLEALSMVKARHA"
     gene            complement(1555..2826)
                     /gene="gltA"
                     /locus_tag="JBH85_14335"
     CDS             complement(1555..2826)
                     /gene="gltA"
                     /locus_tag="JBH85_14335"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HAU0947372.1"
                     /translation="MTQKTAKLSIDGQETIDLPIYTPTLGNDVIDITQLGSHGVFTFD
                     QGFLSTASCESKITYIDGDKGILLYRGYPIEQLAEKKDFLDVSYLLLNGELPNKEEKK
                     AFVSLINNHTMVHQQMYQFLNGFRRDAHPMAIMVGIVGALSAFYHESMDLNNAQDRFI
                     SAIRLVAKMPTLAAMSYKYSIGMPYMYPKNKMSYAENFLHMMFGVPSEDTTPDPVLVR
                     AMDTIFILHADHEQNASTSTVRLAGSTGANPFACISAGIGALWGPAHGGANEACLNML
                     KEIGDVSRIDHYIKRAKDKNDPFRLMGFGHRVYKSYDPRAKVMRKTCYDVLEAVGAKD
                     APLFKLAMELERIALEDEYFIEKKLYPNVDFYSGLTLSAIGIPTNMFTVIFALARTVG
                     WMSHWMEMVATKSRIGRPRQLYTGEKIRDVK"
BASE COUNT          899 a          559 c          621 g          881 t
ORIGIN      
        1 gctattgacc agggaacaag tagtactcgc gctatgatct acacccttca aggtgattta
       61 atcgcaaata gtcagtatcc tcttactcaa tattacccca attcgggttg ggtagaacac
      121 gatcctgagg aaatatggca aaaaactctg aatgcgatga gggatgtcgt atctcaagtt
      181 caaggaaaag caattttatg ctgtggcctt accaaccaac gggaaactac tctgatttgg
      241 aacaaaaaaa caggggaatg cctcgcgcca gctattgtgt ggcaagatag acgtacggag
      301 gagttttgtt attccttgtc tgaatactcg tcaatgatac aagagaaaac cggattactt
      361 cctgatccct atttttcagc gagcaagtta aactggttac taaagaataa tgctcaagct
      421 caatcactaa ttaaccaggg ggatttggca tttgggacaa tagacagttt tttaatatgg
      481 cgcatgacta aaggtgcaag tcatgctacc gatatcacca acgcatccag aactatgctg
      541 tttaatattc atgatgaaaa atgggataag cagttgctgg agcttttttc tatttcagaa
      601 tcggtattac cagcggtata ctccagtgat aatcattttg gggtgataga taaagaatgg
      661 ctgggagtag aaataccaat taccggggtt gcaggtgatc aacaagccgc tttaattgga
      721 caaggttgtt ttaatggagg aatggttaag gctacttttg gtacgggggg atttttatta
      781 ctcaatacag gtgataaacc agttttctca aagcataaat tgttgactac tattgcctat
      841 aaaattaaag aaaaaacagt atatggtttg gagggtagta tttatcatgc cggaactact
      901 gttaaatggt tacgcgatga aatgaagttg atatctcatt ctgctgaaac tgaagtattg
      961 gctcgaagtc ttgatagcaa taacggcgta tatcttgttt catcttttac tggtctggga
     1021 gcacctcatt ggttatcaat aacgggaaca gccattatag gtgtatcccg ttcaacgaat
     1081 agagcacatt ttgccagggc tgccttggaa ggagtttgtt atcaaacacg tgatgtatta
     1141 acctgtatga gagatgatag tcaattggat ttgactttat taagagcgga tggagggatg
     1201 gcagtaaacc aatggtttct acaatttatg gctgatcagt gccagttgac aattcaaaaa
     1261 cccaaagaca ttgaaacgac tgccaaaggg gcagcagtat tagcggcaat aggttctgga
     1321 ctatttgatt cagtttcttc agtaaataag atatgggacg ttgagaacga gtttcagcca
     1381 ttcagggaaa gagaggtagt tgaaaaagat tttcgcggct ggctagaggc gttgtcaatg
     1441 gttaaagcaa ggcatgcata gcctagtctt gtatataaat tggtgcgatt aaattagatt
     1501 gcagtagctc gtattatagt ttaatacaag ctactgatta acacattgga ttttttattt
     1561 tacgtcacga attttttcac cagtatacaa ttggcgaggt ctgccaatgc gtgacttggt
     1621 ggctaccatt tccatccaat gactcatcca tccaacagtg cgggccagag caaatatcac
     1681 tgtgaacata ttggttggta ttccaatagc acttaaagtc agtcctgagt aaaagtctac
     1741 attggggtag agttttttct caatgaaata ttcatcttca agagctatac gttcaagctc
     1801 cattgccaat ttgaataaag gtgcgtcttt ggctcctacc gcttctagta catcataaca
     1861 ggtcttacgc attactttag ctcttggatc atagctttta tagaccctgt gcccaaaccc
     1921 catcaagcgg aatggatcat ttttatcttt agctcgttta atgtaatgat cgatgcgact
     1981 cacatcgcct atttctttta gcatatttaa gcaggcttca ttcgctccac catgagctgg
     2041 tccccataaa gcccctatac cggctgaaat gcaagcaaag ggattagctc cggtagaacc
     2101 ggccagacgt accgtcgatg tagaggcatt ttgctcatga tcggcatgga gaataaaaat
     2161 agtatccata gcccttacca gtacaggatc tggcgtagta tcttcagatg gaacaccaaa
     2221 catcatatgg agaaagttct ctgcataaga cattttattt ttaggataca tataaggcat
     2281 gccaatggag tatttatagc tcatcgcagc taaagtaggc attttagcaa ccagtctgat
     2341 tgcggaaata aaacggtctt gtgcgttatt caaatccatg gattcatgat aaaaagcaga
     2401 caaagccccc acaattccaa ccattatagc cattgggtga gcgtcacgtc tgaacccatt
     2461 caaaaactgg tacatttgct gatgaaccat agtatgattg ttgatcagac taacgaaagc
     2521 tttcttttct tctttgttag gtagttctcc attgagtaat aaataactta catcaaggaa
     2581 gtcctttttt tctgccaatt gttctatagg ataaccccta tacaacaaaa tgcctttatc
     2641 cccatcaata taggtgattt ttgattcaca ggaggcagtt gataaaaaac cttgatcaaa
     2701 ggtaaagacg ccatgtgaac caagctgggt aatatcaatc acatcattac ctagggtggg
     2761 agtatagatt ggtaaatcaa tcgtctcttg cccatcgatg ctgagtttcg ctgtcttttg
     2821 agtcattgct tctcctgatt atttacatgc ttaaagcatt catacttgca ttagtgcgcg
     2881 gaactatata aaaatgacaa catacagtca aattaaacat aattttggtc attaaaaatg
     2941 ctagtcccat atccaatatt
//
LOCUS       DACVWI010000277         2884 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.278, whole genome shotgun sequence.
ACCESSION   DACVWI010000277 DACVWI010000000
VERSION     DACVWI010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2884
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.278"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            10..756
                     /locus_tag="JBH85_14340"
     CDS             10..756
                     /locus_tag="JBH85_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HAU0947373.1"
                     /translation="MIFLMQINTFPITLEESFMISPKVKHFIFNCELSPPFEYLPGQF
                     ITIHFEHDGKNLKRSYSIANEPKKDNRIEFAAGYFEGGPGTELLYNLKPGDVIHINGP
                     FGRLIFRDETPGRYILVATSTGTTPYRAMLNELGQRIEKHPDLQVVILQGVQRSEEIL
                     YPDDFQAFAKKYPQASFRPYLSRVQKQDLKDNEYSGYVQHAFPELNLNPTRDMVYLCG
                     NPGMIDEAFNYLKEHGFSMQHIVREKYISR"
     gene            906..1916
                     /locus_tag="JBH85_14345"
     CDS             906..1916
                     /locus_tag="JBH85_14345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase class I"
                     /protein_id="HAU0947374.1"
                     /translation="MSYEELSNTMEQMLHEGKGILAADESNSTIGKRFASINTENTEE
                     NRRDYRLLLATTPDLEQYINGVILFEETFTQTDEHGTPIPELFANKGIIPGIKVDKGL
                     VDLANTEHEKVTQGLDGLTERLLHFKKLGAKFAKWRNVYSISEYTPSLTAIKTGAENL
                     GRYAAACQSVGIVPIVEPEVLMDGNHSIEHCAEVCEMVLHELFHTLFIHQVELEHIIL
                     KPSMVTCGKEVAPFSDPEEVADYTISVFRNNVPASVPTINFLSGGQTPQQATANLNAI
                     NQIGHQPWLLSFSFGRALQEDCLKEWCGNKANIAKAQEALIKRARLNSMACLGEYQND
                     ME"
     gene            complement(2094..2867)
                     /locus_tag="JBH85_14350"
     CDS             complement(2094..2867)
                     /locus_tag="JBH85_14350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EEP domain-containing protein"
                     /protein_id="HAU0947375.1"
                     /translation="MRDRVSMQPEVRSVSLITYNIHKGFGVGAVRFLLPEMRDAIAGL
                     NPDFVFLQEVQGKHRKREKRIVSWPDSPQCEYIAENIWPHYVYAKNAVYQSGHHGNAI
                     LSKYPFESFESINLSNMNRASRGILHTQLKLDNNIIHLLCVHLGLFKAERTEQCKALI
                     QRIKDVVPKNEPLIMAGDFNDWRHVISKILAENLGIEEAFVALEGQHARSFPAIKPAL
                     CVDRVYFRGMKVQEVACLQGKPWRMLSDHLPLYARFELL"
BASE COUNT          951 a          573 c          537 g          823 t
ORIGIN      
        1 gaataaaagt tgatattcct tatgcaaata aatactttcc ccatcactct agaagagtct
       61 ttcatgattt ctcccaaggt aaagcacttt atattcaatt gtgaattatc accccctttt
      121 gaatatttac caggacaatt tatcactatt cattttgaac atgatggaaa aaacttaaag
      181 cgtagttaca gtattgccaa tgaacccaaa aaggataatc gcattgaatt tgctgccggg
      241 tatttcgaag gaggaccagg cacagaacta ctctacaatt taaagccagg tgatgtgatc
      301 cacattaatg gacctttcgg tcgtttgatt tttagagatg aaactccagg aagatacata
      361 ttggtagcga ctagtactgg taccacacct tatagagcca tgcttaatga gcttggtcaa
      421 agaatagaaa aacatcctga tttgcaggta gtcatccttc aaggagtgca acgcagcgaa
      481 gagattctct atccagatga ttttcaagcc tttgcaaaaa aatatcctca agcaagtttt
      541 cgtccctatt taagccgtgt gcaaaaacaa gacttgaaag acaatgaata cagtggttat
      601 gtacaacatg catttccaga gcttaattta aatccaactc gcgatatggt ttatttatgt
      661 ggaaatccag gtatgatcga cgaggcattt aattatttaa aagaacatgg tttttccatg
      721 caacatattg tacgtgaaaa atatatttca cgctgaaata ccgcatcaaa aaccattgtt
      781 aatcaatgtc atcctttcgg taaataaccc ggatttgaca aaagatgact aatcgttatt
      841 taaatttaat aggtgccaaa ccacttcgaa aggtcgacac ccgataatga ggagataaag
      901 acgctatgag ttatgaagaa ttatcaaata ccatggagca aatgctgcat gaaggaaaag
      961 gtattttagc tgcagatgaa agcaacagta caattggcaa acgctttgcg tcaatcaata
     1021 cagaaaatac cgaggaaaat cgaagagatt atcgcttgtt actagcgacc actcctgatt
     1081 tagaacagta tatcaacggc gtcattttat ttgaggaaac ttttactcaa actgatgagc
     1141 atggaacacc aattcctgag ctttttgcta ataaaggcat tattcctgga attaaagtag
     1201 acaaagggct tgttgattta gccaatacag aacatgaaaa agttacccag ggattagatg
     1261 gtttaactga gcgtctactt cattttaaaa aattaggtgc aaaattcgca aaatggagaa
     1321 acgtttattc aatttccgaa tacactccca gcctaactgc aatcaaaaca ggagctgaaa
     1381 atttgggccg ttacgctgct gcttgtcaat cagtcggcat cgtcccaatt gttgagcctg
     1441 aagtattaat ggatggcaac catagcatag aacattgtgc agaagtctgt gaaatggttc
     1501 tccatgagct gtttcatacc ttgtttatcc atcaagtgga gttggagcat attatactta
     1561 aaccgagtat ggttacctgt ggtaaagaag tggccccgtt tagcgatcct gaagaagtgg
     1621 ctgactacac cattagtgta tttcgtaata atgttccagc gtcagtaccc accattaatt
     1681 tcctctccgg tggccaaaca ccccaacagg ctaccgctaa cttgaatgca atcaatcaaa
     1741 ttggccacca accctggtta ttaagttttt catttggaag agcattacaa gaggattgct
     1801 taaaggaatg gtgtggaaac aaagcaaata ttgccaaagc gcaagaggct ttaattaaga
     1861 gagcccgctt aaacagtatg gcttgtttgg gtgaatacca aaacgacatg gagtaaagtt
     1921 gcaatagcga cagaaccttc tctcgaccag gaaggctgtc gctttaattt taatcataca
     1981 aggcttgcta aaaaccccat ggtcaaggca aaaaatttta aatgagggag ttggaataaa
     2041 ccaaatgacc gcattaaaaa tctttttcaa caaagagact ggaggtaacc ctgtcataat
     2101 aattcaaaac gtgcatacaa gggtaaatga tcagataaca tccgccaagg tttgccctgt
     2161 aaacaagcaa cctcttgaac tttcatcccg cgaaaataca ccctgtcgac acacaaagca
     2221 ggttttattg caggaaatga acgggcatgt tgtccttcaa gcgcgacaaa agcttcttca
     2281 atccctaagt tttcagcaag gattttagaa ataacatgac gccaatcatt aaaatctcct
     2341 gccattatca aaggctcatt tttaggcaca acatctttaa tacgctgtat caatgcctta
     2401 cattgctcag tacgctctgc cttgaatagg cctaaatgaa cacacaaaag atgaataata
     2461 ttattatcca attttaattg ggtatgaagt atacctcttg atgctctgtt catgtttgaa
     2521 agattaatac tttcaaaact ctcgaacggg tatttgctta aaatagcatt tccgtggtgg
     2581 ccagattgat atactgcatt ctttgcataa acgtaatgtg gccatatatt ctcagcaatg
     2641 tactcacatt gaggggaatc aggccaactg acaattcttt tttcgcgttt tctatgttta
     2701 ccttgcactt cttgtaaaaa aacaaagtcc ggatttaatc cagcgatagc atctcgcatt
     2761 tctggaagca aaaaccttac tgcacctacc ccaaaacctt tatgaatatt atatgttatc
     2821 agcgatacgc tgcgcacctc aggttgcata gatactctat ctctcattta ggtttctata
     2881 atca
//
LOCUS       DACVWI010000278         2835 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.279, whole genome shotgun sequence.
ACCESSION   DACVWI010000278 DACVWI010000000
VERSION     DACVWI010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.279"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            4..981
                     /locus_tag="JBH85_14355"
     CDS             4..981
                     /locus_tag="JBH85_14355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HAU0947376.1"
                     /translation="MNEPKDIKSIYYLRGFMKLLASLCAFLLSGAVSATPLNNIVVFG
                     DSLSDNGNLYEYMKHQLPQSPPYFEGRFSNGPVWIERLAASYFPNDPNSHLLDYAFGG
                     AGVSVDEEDDEVFFTLRREVNSYLLAHQDKASPDSLFVIWIGANNYLGMPVEVDETLK
                     NVNRGITDSIQRLVDKGAKHILVLNLPDLGRTPAALEFGSVEEMTYFSTQHNNALSNT
                     VDYFKKTYPEVEWLFFDTGSHFDHVIEHAAEYGFTNITGTCSFSIVDEITKNSVLKMV
                     ASVKPELTESACDGYLFFDLVHPTALAHKIMAEKARLMLDEAGVEFAEN"
     gene            1173..1946
                     /locus_tag="JBH85_14360"
     CDS             1173..1946
                     /locus_tag="JBH85_14360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3530 family protein"
                     /protein_id="HAU0947377.1"
                     /translation="MNQIKWIVLLFCFVVSNVFADKLDITVDQKKIILPYWLSRPVSY
                     GAVIIVSGGETAQWSLLLEQFAKGLARNGWSVVLLNCTKNNSIPWINQLPEVISTLRQ
                     NNNKRIVLVHYGDQLNLALEYFSKPQSKMINGLVMLSAYDLNRNLQKVPRLRFPLFDI
                     VGQFDYDMVRQQRKSREEKFKENSYLAIDIPGATHDYQYSQQLLLAFVHGWMAKLPEF
                     EPQPPPILVSYLEPVYSTASSIVSTNKLDYQPLVSQINS"
     gene            complement(1913..2803)
                     /gene="djlA"
                     /locus_tag="JBH85_14365"
     CDS             complement(1913..2803)
                     /gene="djlA"
                     /locus_tag="JBH85_14365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HAU0947378.1"
                     /translation="MNLRDFFVITTWWGKILGAFFGYLTAGPVGALFGILVGNFFDRG
                     LVSYYSNPHWLYHAEKQRIVQKAFFEATFSIMGHVAKSDGRVSEQEISMAKSIMNEMK
                     LSKGQKDLAKRLFNEGKQADFNVSLALIQLQRICKDNRDLLKLFVDIQYRAAQVDGLS
                     SQKIHALDNIFTHLGFAPLHKQYRFYEDFGSYFQQEQSKQHYHNQQEYKHTSSSQGQQ
                     GYKPQSPPNTLAHAFALLEVSPNANKQEVRRAYRRLLSRNHPDKLIAQGLPEEMIKLA
                     NDKTHQIMKAYELICETKGW"
BASE COUNT          841 a          503 c          592 g          899 t
ORIGIN      
        1 taattgaatg aacctaaaga tataaaatca atctattatt taaggggttt catgaaacta
       61 ttagcatctt tgtgtgcttt tttattgtcg ggagctgtta gcgcgacacc acttaataac
      121 atagttgtat ttggtgatag tttgtcggat aacggtaact tatatgaata catgaaacac
      181 caacttcctc aatccccccc ttattttgaa ggtcgttttt ccaatggccc agtatggata
      241 gaacgtctgg cagcttcata cttcccaaat gatcccaact ctcatttgct ggattatgct
      301 tttggcggag caggagtctc tgtcgatgaa gaagatgatg aagtattttt taccttaaga
      361 agagaagtga attcttattt gttagcacat caggataaag caagccctga cagtcttttt
      421 gttatttgga taggggcaaa taattacctc ggaatgcctg ttgaagtgga cgaaacgctt
      481 aaaaatgtta accgagggat tacggatagc atacaacgtt tggtagacaa gggagcgaag
      541 catattttag ttctcaattt acctgatttg ggaagaactc ctgccgctct ggagtttggc
      601 tctgttgaag agatgaccta tttctcaaca cagcataata atgcattatc caatacagtc
      661 gattatttta aaaaaactta tcctgaagtt gagtggttgt tttttgacac gggtagtcat
      721 tttgaccatg tgatagaaca tgctgcagag tatggattta caaatataac aggtacctgc
      781 tccttttcga tagtagatga gattactaaa aactcggttt tgaagatggt tgcgtctgtg
      841 aagccagaat tgacagaaag cgcatgtgat ggttatttgt tttttgattt ggttcatccg
      901 acagcgttgg cacataaaat aatggcagaa aaagcgcgtt tgatgctgga tgaagctggt
      961 gtggagttcg ccgagaatta agagtttttt atggtgatag caaatgcaac ttgcatcgtc
     1021 attcaaatga atccgcaatg ataagaacgg ggattttata ctgagcagaa cccaatgaga
     1081 gaatgatgtg tttgaacttc gcaaatattc tctcattcta actggcacta actagtgcgt
     1141 cttgtccatc ataggcaatt ttatagggaa atatgaatca aattaaatgg atagtactac
     1201 tattttgctt tgttgtttcc aatgtatttg cggataagct tgacataacc gtcgatcaaa
     1261 aaaaaattat attgccttat tggctatcaa ggcctgtttc ctatggggcg gttatcattg
     1321 ttagtggtgg agagacagcg caatggtcct tattattgga acagtttgcc aagggattgg
     1381 ctcgaaatgg ctggtcagtc gtattattga attgtactaa aaataactcg ataccctgga
     1441 ttaaccaatt accggaagtc atcagtactt taaggcagaa taataataaa agaatcgttt
     1501 tagtccatta tggtgatcaa cttaatctgg cattagagta ttttagcaag ccccaatcca
     1561 agatgatcaa tgggctagtg atgttgtctg cctatgattt aaatagaaat ttgcaaaaag
     1621 tacctcggtt gcgttttcca ctgtttgata ttgtggggca gtttgattat gacatggtaa
     1681 ggcagcaacg taagagcagg gaagaaaaat ttaaagagaa tagttattta gccattgata
     1741 tacctggtgc tactcatgac taccaataca gtcaacaatt attattggcg tttgtccatg
     1801 gttggatggc aaagcttcca gagtttgagc cacagccacc gccgatattg gtttcttatc
     1861 tggaacccgt ttattctaca gcaagttcaa tcgtatcgac caacaaattg gactaccaac
     1921 ccttggtttc acagatcaat tcataggctt tcataatttg atgagtttta tcgttagcca
     1981 atttaatcat ttcttcgggt aaaccttgag caattaattt atctggatgg ttacggctca
     2041 atagacgtct gtacgctctt ctaacctcct gtttgtttgc attcggactt acctcaagta
     2101 atgcaaaagc atgggctaaa gtattagggg gtgattgagg tttgtaaccc tgttgacctt
     2161 gagatgagga ggtatgcttg tactcctgtt gattatgata gtgttgtttg gattgttctt
     2221 gctggaaata agaaccaaaa tcctcataaa aacgatactg tttgtgtagg ggagcaaatc
     2281 ccagatgcgt aaaaatgtta tctagtgcgt gaattttttg actacttaat ccatctactt
     2341 gagctgccct atactgaata tctacaaaaa gctttaacaa atcacggtta tccttgcaga
     2401 ttctttgtaa ttggataaga gcaagactga cattgaaatc agcttgtttc ccttcattaa
     2461 ataatcgttt tgccaaatcc ttttgcccct tgctcaattt catttcattc atgatggatt
     2521 tagccatgct aatctcttgt tcagaaacac ggccatccga tttcgcaaca tgccccatta
     2581 tggagaaagt ggcttcaaag aaagcttttt gaacgattct ttgtttttct gcatggtaca
     2641 gccaatgggg attagagtaa taactgacaa ggccccgatc aaaaaagttt ccaacgagaa
     2701 tgccaaacaa agcgcctact ggcccagcag ttaagtagcc aaagaaggca ccaagtattt
     2761 ttccccacca ggttgttatt acaaagaaat cgcgtaagtt cattatcaga aattacctat
     2821 aaagatatgt gttaa
//
LOCUS       DACVWI010000279         2808 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.280, whole genome shotgun sequence.
ACCESSION   DACVWI010000279 DACVWI010000000
VERSION     DACVWI010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.280"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            111..599
                     /locus_tag="JBH85_14370"
     CDS             111..599
                     /locus_tag="JBH85_14370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAU0947379.1"
                     /translation="MDFEQSLWTIPSSHTKNALVMKIHLTPLTQSLFELLKAETNSSF
                     VIPGLNDEEPLTDKAIAKAVSRIQTRVGIPHWTAHDLRRTFATQLGEALHVDPVVIEK
                     CLGHKMPKIMATYNKNEMLPQRKEALIRWEERIKQLIGSDSLKLAVYCKTALNKAEIT
                     IG"
     gene            606..2063
                     /locus_tag="JBH85_14375"
     CDS             606..2063
                     /locus_tag="JBH85_14375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAU0947380.1"
                     /translation="MIKNLITQQEGKTLEFKRDLSSPKSLLKSIVAFANTAGGHLIIG
                     VNDERQIIGVEHPLDEEERLCNLIADSISPRLIPSIELVTLNNKTLLVIEVFVSNTGP
                     HWINSEGSTQGIYVRLGSTNRQADQELITELHRRSEGVNFDEMPMPQLSVDDVDITKA
                     QELFSDIKSLNEKNLLTLKLITSHQGKLVPTKGAILLFGKERNTYFPDAWVQCGRFIG
                     KDKSRIFDHVDIYDYLPDAVESIMMFLKKHALRGADFSAVQRKDIWSIPLVMLREAVI
                     NALVHTDYSQRGAPIRISFFDDRIEIENPGILLPGLTIEDMRQGISKIRNHVIARVFR
                     ELNLIEQWGSGVSRIYSEAIEQKLQEPEIIEIGMRIRFIIYLAQGIPIDSTFDKRDKQ
                     LESRLESRLESRLESKLAARVIQVLQNGEAGKIQIARSLGHQTVSGELHKQIKQLLKL
                     EIIEMTIPDKPNSRLQKYRLTNKGIDLINIIQREL"
     gene            complement(2243..>2808)
                     /locus_tag="JBH85_14380"
     CDS             complement(2243..>2808)
                     /locus_tag="JBH85_14380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947381.1"
                     /translation="NIKSLLRKPVFTSKEANELGMSPSLLCYYVQKDIIHRVSKGLYQ
                     AVYVKKEFDFRWEDLIFTLRSISQGVICLVSALAIYELTDEMPRKHWIAVPHSTTKPM
                     RPNTIVKRMRDVSTGLTTWNVDGESVPIFDMERTIIDAFRFLSKEIALKALQTGLREK
                     HIDSRKLQRYAKKLRVDVTPYLLAMTI"
BASE COUNT          946 a          531 c          506 g          825 t
ORIGIN      
        1 tgacccaatc tcgctttgta aaagatgtga tttccctgga tgaatttagc tgtaaattga
       61 ctattattgt taacctcaat agaattgcca tctaatttat catcaatgaa attgattttg
      121 agcaatcact ctggacaatc ccatcaagcc ataccaaaaa tgcgctggtt atgaaaattc
      181 atttaacgcc actcactcaa tctttatttg aattattaaa agctgaaacc aattcttctt
      241 ttgtcatacc agggcttaat gatgaagaac ccttaaccga taaggctatt gcgaaagcag
      301 ttagcagaat tcaaactcga gttggcattc ctcattggac agcccatgat ctaagacgca
      361 cctttgcaac ccaacttgga gaggctttgc atgttgatcc ggtggtaatt gagaaatgtt
      421 tagggcataa gatgcctaag atcatggcta cttacaataa gaatgaaatg ctacctcaaa
      481 gaaaagaagc tcttattcgg tgggaagaac gtattaagca acttatagga tcagactccc
      541 tcaaattagc tgtatattgc aaaactgctt taaacaaagc agaaattaca attggataaa
      601 aattcatgat aaaaaatcta attacacaac aagaaggaaa aacactcgag tttaagagag
      661 atttatcatc accaaaatca ctacttaaat ctatcgttgc ttttgcaaat acagctggcg
      721 gtcacctgat tattggggtc aatgatgaaa gacaaataat aggtgttgag catccattag
      781 acgaagagga acgtctgtgt aatctgattg ctgattctat ctcaccacgt cttataccta
      841 gtattgaatt ggtaacacta aataataaaa cactgctggt aattgaagta tttgtcagta
      901 atacaggacc tcattggatc aattcagaag gatcgacaca aggtatttat gtccgactag
      961 gttccacaaa tcgtcaagca gatcaagagc ttatcacaga attacaccgt cgctcagaag
     1021 gagtaaattt tgatgaaatg cccatgcctc agctttctgt cgatgatgtt gatataacga
     1081 aagctcaaga actattttca gatattaaat cgctgaatga aaaaaacctc ctgactttaa
     1141 agctcattac ttctcatcaa ggaaaattag ttccaacaaa aggtgcgata ttgttatttg
     1201 gaaaagaacg caatacatat tttcctgatg cctgggtaca atgtggccgt ttcattggta
     1261 aagacaaatc ccgtattttc gatcatgttg atatctatga ctatcttccc gatgcagttg
     1321 agagcatcat gatgtttttg aaaaagcacg ctttacgtgg cgctgatttt tcagcagtac
     1381 aaagaaaaga tatttggagt atccctcttg ttatgttgcg cgaagctgtt atcaatgcac
     1441 ttgtccatac cgactactct caacgtggtg cgccaattag gatctctttt tttgacgacc
     1501 gtatagaaat agaaaaccca ggaatcctgt tacctgggct aacgattgaa gatatgcgac
     1561 aaggcatatc caaaattaga aatcatgtta ttgccagagt tttccgtgaa cttaatttaa
     1621 tcgaacaatg gggaagtggt gtaagtcgta tctattccga agctatagaa caaaaattac
     1681 aagaaccaga aattatagaa attgggatgc gaatacgctt tattatatat cttgcacaag
     1741 ggataccaat cgattccact ttcgataaaa gggataaaca attggagtca cggctagagt
     1801 cacggctaga gtcacggcta gagtcaaaac ttgcggctag agtcatccaa gtactgcaaa
     1861 atggggaagc tggaaaaata caaattgctc gaagtttagg tcatcaaaca gtatcaggag
     1921 aactacacaa gcaaattaag cagctactaa agcttgagat aatagaaatg actattccag
     1981 ataaaccaaa tagtagattg caaaagtatc gcctgactaa caaagggata gatctaataa
     2041 acatcataca gcgggaattg taatgctcac cctaggtttt tctcaaggcc aaaataataa
     2101 aaatcagaca aaacctcttc acttatcaat aacagattag tatttgtctg attttaaaaa
     2161 agctcaagga tttattttaa taaattatca ttttctataa agattaatat aacttttttg
     2221 tccgctttaa gcgattgttc attcatatcg tcatcgccaa caaataagga gtaacatcaa
     2281 cgcgcagttt ctttgcatag cgttgcaact ttcgagaatc aatatgtttt tctctcaatc
     2341 cagtctgaag tgccttaaga gcaatttctt ttgaaagaaa tcgaaaggca tcgataatag
     2401 tacgctccat gtcaaaaatg ggtactgatt ctccatcaac attccatgtt gttagaccag
     2461 tgcttacatc cctcattctt tttacaatgg tatttggcct cattggtttc gttgtactat
     2521 gaggtactgc tatccaatgc ttacgaggca tttcatctgt aagctcatat attgccagtg
     2581 cgctaacgag acaaataaca ccttgggaaa ttgatctcag tgtaaatatc aaatcttccc
     2641 acctaaaatc aaactctttc ttcacataaa cagcttgata taggcctttg ctaactcgat
     2701 gaataatatc tttttgcaca tagtaacaga gcaaacttgg agacatacca agttcattag
     2761 cctctttact ggtaaaaacg ggctttctca gaagagattt aatgttag
//
LOCUS       DACVWI010000280         2790 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.281, whole genome shotgun sequence.
ACCESSION   DACVWI010000280 DACVWI010000000
VERSION     DACVWI010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.281"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..491
                     /locus_tag="JBH85_14385"
     CDS             <1..491
                     /locus_tag="JBH85_14385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947382.1"
                     /translation="EQIPPEWEKINFEPLSHIGFSKTQIKQLIGKNDPTIVQESIYHF
                     AFGLEYNQKTKKYDDPLNVLMGVLRKGQAWIEGDYRSAIEIAQEKLLESKKAEIERKK
                     SLEEKAFKLAFHEWESEITESELQKLTERKNGDLTPPKAKLTMYFRENIWPSKKGEYL
                     LF"
     gene            780..2234
                     /locus_tag="JBH85_14390"
     CDS             780..2234
                     /locus_tag="JBH85_14390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003637166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HAU0947383.1"
                     /translation="MDSVKMNRKGVVYLHWLNGISTFSFAILFSSLSLYLTKNIGLSQ
                     VQSNGVVGFFLASNFILHFIAGYLGDKWLSNRLLFATSTIVQSIGLIVLNFSESFVYL
                     GLSLFVIGCGLGSTCINCLITQQFNSQEDELREKAFFHNYGAMNIGFLSGYILSGYID
                     INDKYEHLFEMSNLINLITVFFIIKSWKHFAKKTVAIRKEIGDGKLGLLLILLIIPIL
                     FAGFYYYWLANGLILSIGAAALFYITLLAHGFKNNNERKKIYSFIFLTVSSIVFWMLY
                     FVGPMGVTQFLKYNVNIYVGTYYIPPQWLMNLNSLFVIIGSPLMISLLERLRKKHIII
                     SIPKQFICSLVFIALSFSVLALGILKSSPDGLTSVNWIVAHYFFQAVGELLIAPVGYA
                     MIGHLAPEKLQGLMMGIWMMASGVSVTLSNYFSNLMTQSESLNPFISNEHYMSVFNQL
                     GLYAVLGALILWLFSKTIENSIQKTSNRTIEGIA"
     gene            complement(2236..>2790)
                     /locus_tag="JBH85_14395"
     CDS             complement(2236..>2790)
                     /locus_tag="JBH85_14395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003637165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947384.1"
                     /translation="DKLPINELNIVKGMLLNVQKSHGVKLSSPQKVLDEIVFSLSNKE
                     QFQNIDTFQHKINIISQLLRNNRWRTPKGFNKYSPEAKRYQEQCDQENTARLKIKKDE
                     CTYSGLNEISTNKRLHNVYDLNRRACSNINLQNSLQLQQSLVNGIKKDIKTIKNPNIL
                     ENFLKILAQEEIQLSKIQGELSLQ"
BASE COUNT          887 a          385 c          507 g         1011 t
ORIGIN      
        1 atgaacaaat acctccggaa tgggaaaaaa ttaattttga accattgtca catataggat
       61 tttctaaaac acagataaaa caattaatcg gaaagaatga tccaacgata gtccaggaat
      121 caatttatca ttttgcattt ggtttggaat ataatcaaaa aactaagaag tatgatgatc
      181 ccttgaatgt attgatggga gttttaagaa aaggacaagc ttggatagaa ggcgattatc
      241 gttcagcgat agaaatagca caagagaaac tgttagaaag caaaaaagca gaaattgaac
      301 gtaagaagag tcttgaggaa aaggctttta aattagcttt ccacgaatgg gaaagtgaaa
      361 taactgaaag tgaattacag aagttaaccg agcgaaaaaa tggagacctt acgcctccta
      421 aggcaaagtt aactatgtac tttagagaaa atatttggcc ttcaaaaaaa ggggagtatc
      481 ttttgtttta aattcagaga gatatgttaa atttacctgc aagtaaatta tcagagcata
      541 tctacatttt ccgttaaata ttgctatacc tgctgggaaa atggatttag ctatatgtgc
      601 aaaaatatat tgagttggtt ctataaattt atcgctattc ttaaacattc tttattattg
      661 gttccaataa tacacttaaa aaaattagtg atgtaaaatt tattagcttt tgattgtagg
      721 ttttattcga aaataatttg cattatgcaa gttattacta cctgaggata ggatattaaa
      781 tggattctgt aaaaatgaat aggaaagggg tagtttattt acactggtta aacggaataa
      841 gtacattcag ttttgctatc ttattttcat cattatcact ctacttgact aaaaatattg
      901 gtttaagtca agtgcaatct aatggggttg taggtttttt tctggcttca aatttcattc
      961 ttcattttat agcaggttat ctcggtgata agtggttaag taatcgattg ctatttgcca
     1021 cttcgacaat tgtacaaagt attggcctca tagtgctgaa tttttccgaa tcatttgtat
     1081 atttaggatt aagtttattt gttattggat gtggtttagg ctccacctgc attaattgcc
     1141 ttattacaca acaatttaat agtcaagagg atgaattaag agaaaaagcc ttttttcata
     1201 attacggcgc aatgaatata gggtttcttt ccggctatat cttaagtgga tacattgaca
     1261 tcaatgataa atatgaacat ttatttgaaa tgagtaatct gattaacctg attacagtat
     1321 ttttcattat taaatcatgg aagcattttg ctaaaaaaac agtagctatc agaaaagaga
     1381 tcggggatgg taaattggga ttattattaa ttttattaat aatacctatt ctctttgcgg
     1441 gattttatta ctattggttg gcaaatggac tcatactttc tataggagct gcggctttat
     1501 tttacataac gctattggca catggtttta aaaataataa tgagagaaaa aaaatttatt
     1561 cttttatatt tttgactgta agttctattg tattttggat gctttacttt gtcgggccga
     1621 tgggagttac tcaatttttg aagtataacg tgaatatata cgtaggcaca tattatattc
     1681 cccctcagtg gttgatgaat ttaaattcac tttttgtgat tattggttca cctttaatga
     1741 tctctttatt agagcgacta agaaagaaac acataattat ttctatcccg aaacaattta
     1801 tttgttccct agtgtttatc gcattgtcct tttcagtgtt agctcttggc atattaaaat
     1861 caagccctga tgggttaact agtgtgaatt ggattgttgc acattatttt tttcaagcgg
     1921 taggagagtt gctcattgct ccggtgggtt atgctatgat aggacatctc gcgccggaga
     1981 aactgcaggg gcttatgatg ggaatatgga tgatggcttc tggtgtatcg gtcacattgt
     2041 ccaattattt ttccaattta atgactcaat ccgagtcatt aaatcctttc attagcaatg
     2101 agcactacat gagcgtattt aatcaactag gtctttatgc tgttcttgga gcgttgatac
     2161 tgtggttatt ttctaagact attgaaaaca gtatacaaaa aacgtcaaat cgaacaattg
     2221 aaggaatcgc ataatctatt ggagtgataa ttccccctgt attttggata gttgtatttc
     2281 ttcttgagct aatattttta agaaattttc caatatatta ggatttttta tcgttttaat
     2341 atctttttta attccattaa caagactttg ttgcagttga agtgaatttt gtaagttaat
     2401 attagaacaa gctcgacgat tcaaatcata cacattatgt agacgtttat ttgttgaaat
     2461 ttcatttaac cctgaataag tacattcgtc ctttttgatt ttcaatcgag cagtattttc
     2521 ctgatcacat tgttcttgat aacgtttagc ttcaggtgag tatttgttaa atcctttcgg
     2581 tgttctccag cggttgttac gaaggagttg agaaatgata ttaattttat gttgaaaagt
     2641 gtcaatattt tgaaattgct ctttattgct taatgaaaat acaatttcgt ctaaaacctt
     2701 ttgaggggat gatagcttta ctccatggct tttttgaaca ttcaataaca tccccttaac
     2761 gatattgagt tcgtttatag gtagtttatc
//
LOCUS       DACVWI010000281         2777 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.282, whole genome shotgun sequence.
ACCESSION   DACVWI010000281 DACVWI010000000
VERSION     DACVWI010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.282"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1073
                     /locus_tag="JBH85_14400"
     CDS             <1..1073
                     /locus_tag="JBH85_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947385.1"
                     /translation="SHANKIEAIINILRPSILLFSEDIVERDSNLWIKIAHTKNILSM
                     VISYGTPSKTEAAETYCNDPNYQFPTHLPPHIKFLLKFVLNKWCFLHQKRKLIRLPLK
                     QLVAMDLLDYSPKLPWVTNSGEADIVMVESNFAKDLFKKEGLKNKRIKVLGNLKFDAM
                     NTILNDLKSYKAYIYEKYNLCRDRNLILCAFPSYLPERKLLDFNSYEDLIYKYVLGLQ
                     ASNHHVLYSIHPSGIPWVGDKLRHLGQLVAEEKIFNLIPICDIFLATVSSTIKWARAC
                     GKLVLNYDCFGFNYDVYKKDSAVIHINSFDELLVWVDKLNNQQVSDILMELSPFIPSN
                     YWGKIDGQSFHKIRYYIDALAK"
     gene            complement(1419..2494)
                     /locus_tag="JBH85_14405"
     CDS             complement(join(1419..2245,2245..2494))
                     /locus_tag="JBH85_14405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611486.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAU0947386.1"
                     /translation="MKKRYSEEQIIKAIKSHESGVKVEEICRDYSISSGTFYNWRSKY
                     AGFEVNEAKRLRDLESENTKLKKLLADKLLELEAMKDVLFKKVVKPAAKKPIVSHLIS
                     KFKLSECAACRLAGLSRISFRYQSKSRTDEALRERLKELACQYPAYGYLMLHGLLKAE
                     GLVTNKKHTYRLYSEEGLQVRTKKRKKLIRPRQPIEIPATVNQRWSMDFVSDQLSNGR
                     RFGILNVVDDYSREVIGQLVSVSISGRLVARFLNNLIEERNKPTKIICDNGSEFTSKA
                     MFFWSKETNVGLGFIQPGKPTQNAFVESLNGKFRNECLNQHWFRTLEEAKYEIEKWRQ
                     HYNYVRPHSSLNYVAPVEFARQVA"
BASE COUNT          860 a          510 c          479 g          928 t
ORIGIN      
        1 aatcccatgc taataaaata gaagcaatta ttaatattct caggccatct attttattat
       61 ttagtgagga catagttgag cgtgatagta atctatggat aaagatagct cacacaaaaa
      121 atattttatc tatggtgatt tcttatggaa ccccttcaaa aactgaagct gcggagacat
      181 actgtaatga tccaaattat caatttccca ctcatctacc gcctcatatt aaatttcttt
      241 tgaaatttgt tttaaataaa tggtgttttc tgcaccaaaa aagaaaactt attcgccttc
      301 ctctgaaaca gttagttgca atggatttat tagattattc gccaaaatta ccttgggtaa
      361 caaatagtgg tgaggccgat atagttatgg ttgaaagtaa tttcgctaaa gatctattca
      421 aaaaagaagg acttaaaaat aagcgaatta aagttttggg gaatctaaaa tttgatgcca
      481 tgaatacaat attgaatgat ttgaagagct ataaggccta catatatgaa aaatataatt
      541 tatgcagaga ccgaaattta attttgtgtg cctttccttc ttacttacct gagagaaagc
      601 tactagattt taatagctat gaggatttga tttataaata cgtattagga ttacaagcat
      661 caaatcatca tgtactatat tcaattcacc catcaggaat tccttgggtt ggagataaat
      721 taaggcatct tggccaatta gttgcagaag aaaagatttt taatttaatt ccgatatgtg
      781 atattttctt ggcaacagtt tcaagcacca tcaaatgggc tagagcgtgt ggtaagcttg
      841 tattaaacta tgactgtttt ggttttaatt atgatgtata taagaaagat tctgcagtta
      901 ttcatattaa tagttttgat gagctcttag tttgggtgga taaactgaat aaccaacaag
      961 tatcagatat cctcatggag ctaagccctt ttattccatc taattattgg gggaaaattg
     1021 atgggcaatc atttcataag attcgttatt acattgatgc tctagctaaa taacatcacc
     1081 tagatatagg cagagctaaa ttctcaccaa gtgaatcgat ttgagataga agcagctaat
     1141 tctgatgaga agttaataat aaaattatca ggactttgat atcttgtcaa ctcaatagct
     1201 gtttggacaa tcccattgta tcccaaaaaa ttgatttttg gagctcaatc agaacaaggt
     1261 agtcgtttta ttgaacgtat cttttctgtt gttgctactt ataaacagca aaaaaagatg
     1321 tcttggcatt tctcatggaa gcacttcatc aatcggcttc aattcaaaag tgacctttcc
     1381 cctgaattaa taccacaaca ttgatgagat aaattatatt aagctacctg ccttgcaaac
     1441 tccaccggcg caacatagtt aagagaacta tgaggacgta catagttata atgttggcgc
     1501 catttttcaa tctcatattt agcttcctca agcgttctaa accagtgttg attaagacat
     1561 tcatttctaa atttgccatt taaactttcg acaaaagcat tttgtgtcgg ttttccaggc
     1621 tgaataaagc ctaagccgac gtttgtttct ttgctccaaa agaacattgc cttgctagta
     1681 aattcggagc cgttgtcaca aataatcttt gttggtttat ttcgttcttc tatcaggtta
     1741 tttagaaagc gtgccaccag cctaccacta atggatactg aaactagctg accaataact
     1801 tcacgagaat aatcatccac tacatttagt attccaaacc gtcttccatt actcagttga
     1861 tctgaaacaa agtccattga ccaccgttga ttaaccgttg caggaatttc gattggctgg
     1921 cgaggacgaa tgagtttttt ccttttcttt gttctcactt gtaagccttc ttcagaatac
     1981 aaccgataag tatgtttctt atttgtgact aaaccttccg ctttaagaag tccatgaagc
     2041 attaaatacc cataagcagg atattggcag gccaattcct ttaatcgctc tctgagcgct
     2101 tcatctgtcc ttgatttgga ttgataccgg aatgatattc gactcaatcc cgccagcctg
     2161 cacgccgcac actcacttaa tttaaacttt gaaatgaggt ggctgacaat tggcttcttg
     2221 gccgctggct ttaccacttt tttgataaca catccttcat ggcttcaagt tcaagaagtt
     2281 tatcggccag tagcttctta agcttggtgt tctcactttc aagatcccgc aaacgcttag
     2341 cttcatttac ttcaaaccca gcatacttac tgcgccaatt ataaaaagta cctgaagaga
     2401 tgctgtagtc tcggcaaatt tcttcaactt tgacaccaga ttcgtgggat tttatcgctt
     2461 taattatttg ctcttcgctg tatcgctttt tcatcttgag atctcctatt tttaaatttt
     2521 atcggaaatc tcatctttgt catggtctta tttttggggg ataggtcaaa agaaacttag
     2581 acgccccttt acaaggggcg tgagcgttta cacctaacag ggcggccgag ttagatattt
     2641 aaaaatattg gataataaaa actatataaa cagaaaactt attcagcaat tataggaatc
     2701 tgttttaatt tattatcctt ttgatgaatg agctcaggat taattgcgca tgcttttatt
     2761 ttagaagccc gaataca
//
LOCUS       DACVWI010000282         2775 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.283, whole genome shotgun sequence.
ACCESSION   DACVWI010000282 DACVWI010000000
VERSION     DACVWI010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2775
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.283"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(126..1013)
                     /locus_tag="JBH85_14410"
     CDS             complement(126..1013)
                     /locus_tag="JBH85_14410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947387.1"
                     /translation="MASQVIFLSWGHYFKFEKTTNIEFCIYKKQINLYRLSASCLIKE
                     IFSMKRYIWFHPSYVLESTEATLLGQQTNAKDHGYILLNDQELGKVTCEDHLTIMGHS
                     TLAPTPAEDTGLYIQGDTADDLIRRLTTNGLKEAPKILSLESCRAGISGGLAQQLSRS
                     PFFKYTLIEANLNSVGRKPMEMQWNFPTDSLGRAVLKLDNSPWMFYLGGFLVGRLTHD
                     AYTTEDLFSLLSPPTFHKHFFANYQPGFFGGRSGRHCLFNKTTITLEKASNFALEDQD
                     SASAKALEVVLKKLYSQPA"
     gene            complement(1133..1575)
                     /locus_tag="JBH85_14415"
                     /pseudo
     CDS             complement(1133..1575)
                     /locus_tag="JBH85_14415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212845.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1793..2107
                     /locus_tag="JBH85_14420"
     CDS             1793..2107
                     /locus_tag="JBH85_14420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947388.1"
                     /translation="MKPTLFLVLMWICAESFGATIMVKGLPSPLGYSNDLYYWPPNVA
                     ISPDTTNLFITMDGINKVCFLNTGLQGGLEQISEISIIINGVKKDWNCFPYTTTILEA
                     RP"
     gene            2422..2646
                     /locus_tag="JBH85_14425"
     CDS             2422..2646
                     /locus_tag="JBH85_14425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947389.1"
                     /translation="MKPMKNSKEQEHIAPEAQDPRLSYTEDGRRPLTSTTSAKHPNSL
                     FAKLEERSARESYDQFGNNVTMHWTKDPWN"
BASE COUNT          848 a          559 c          537 g          831 t
ORIGIN      
        1 cgaaaaaccc caaggtcaag gcaaaaaata ttgctaataa gggagtttag ataaactaaa
       61 tggctaaatt aaaaacattt ttaacaaaga gtgtgggttt tttcgtaagt catgttgatg
      121 ttgaattaag ctggttggga ataaagcttt ttcaagacca cttcaagagc cttagcactg
      181 gctgaatcct ggtcttcaag ggcaaaattt gacgcttttt ccagtgtaat tgtggtcttg
      241 ttaaacaaac aatggcgtcc agatcgtcct ccaaaaaagc ctggttgata attggcaaag
      301 aaatgcttat gaaaagttgg gggagacagg aggctaaaca aatcctccgt agtataggca
      361 tcatgagtga gtctcccaac caggaaccca cccagataga acatccaagg gctgttatcc
      421 agttttaata cggcgcgacc taatgagtca gttggaaaat tccattgcat ttccatgggt
      481 tttcggccta cgctgtttag gttcgcttca atcaacgtgt atttaaaaaa aggagagcgt
      541 gacagttgct gggcaaggcc accagagatt cctgctcgac aagattcaag gctcaatatc
      601 ttgggggctt cctttaaccc attagtagtt aatcgtctga ttagatcatc tgctgtatcc
      661 ccctgtatat acaatccggt atcctctgct ggtgttggcg caagtgtgga atgtcccatg
      721 attgtcagat gatcttcgca tgtgactttt cctaattcct gatcgtttaa taagatataa
      781 ccatgatcct tggcattggt ttgctggcca agcaaagttg cctcagtaga ctctaaaaca
      841 taggatggat gaaaccagat gtatcgcttc atagagaaaa tctcttttat taaacaagat
      901 gcacttaaac gatacaaatt tatttgtttt ttgtaaatgc aaaattcgat atttgttgtc
      961 ttttcaaatt taaaataatg tccccagctc aggaaaataa cttgtgaagc caagcttaca
     1021 agaaaggctt gtccctattt ttatagtggt ggcacccaaa acccggggtt ggcagccctc
     1081 cttcccattg cattattctg actttttaca ggtatttcca agttcctgga tgtcaaaacg
     1141 aaatgccttt atcttgatgg cttttaacat tcactttttc agtcgactgg tcaaaaaagt
     1201 ttggctgttg tccgaggtca gggtgacgat ggcctcttgg gtcggtatgg cacttcataa
     1261 acaaacctag gcgctcaaga cgctgattca tgttctttaa ttccatttta gagtagatcc
     1321 cttgtctatt ttcaacttga tttaacgccg tattgacaga acgcaaatgg ccgtagttgg
     1381 tagtgttttt agtaaatcat tgtagtgcac ccgctccaaa gactcttcca gcgatacaaa
     1441 caagtcagca aaaaatgatt ttgcactggt atatcgacgt tgtggcagcc ttgccacaga
     1501 tggtttgtca actactgacg acccttgcat tagtttaaag agcaatactc ctaattaagc
     1561 gtttttacat aacagttaca taacagagag tttaaaaaca aacagggatt tactagattg
     1621 aaaaggtcac ataggggtct gccttcaatc acgtgtttac ttatcccgtc tgaggagttc
     1681 aaatcaagta caccacgtta taatagtcta tcctatatgg tataggagta tgtaggcaaa
     1741 tgtctttagg caatctcatt atcatattat tggttaaaag ggatacgaac ttatgaaacc
     1801 cactctattt ttagtattaa tgtggatctg tgccgagtct tttggagcaa ctatcatggt
     1861 aaaaggactg ccatctcctt tagggtacag caatgatctt tattattggc ctccaaatgt
     1921 agctatcagc cctgacacta ccaatttatt cattacaatg gatggaatta acaaggtatg
     1981 tttcttgaat acaggactac aagggggatt agagcaaatt tccgagatta gtatcatcat
     2041 caatggagta aaaaaagatt ggaattgttt cccctataca acgactattc ttgaggctcg
     2101 cccataggaa taccacagca gcaaacacgt ctttccaaat ggttgaacac gcataaagat
     2161 ttcaccaaat aaaaggattt tccttgctcc catttaagtt aatttaagag cctttcacat
     2221 ctcgaacaag gaccttgctc taacccactc ttctttggat aagctcacat tgtcccttta
     2281 taaccgtaaa ttgtcctatt taaaccacaa ttaaactgga catttaaagt acaattattg
     2341 tgtattttat tcatttgaaa tattttacgg actatttgag ttttacttac accaaaacaa
     2401 cttttaacct gaggatagat aatgaaacct atgaaaaaca gtaaagaaca agaacatatt
     2461 gctcccgaag ctcaagaccc cagattgagc tacaccgagg acggccgtcg cccattaacg
     2521 agcacaacat cagccaaaca ccctaatagt ttgttcgcta aactggaaga acgctcagca
     2581 agggagagtt acgatcaatt tggtaacaat gttactatgc attggaccaa agacccctgg
     2641 aattagtgct ctagcttatg ggttgattcg ttgcgaacca acccaagatt gcctcaaaat
     2701 tactcctcct gtttaataca ttaatatcaa aacagcaggc actgggatgg taattttcta
     2761 cgattttaat tagca
//
LOCUS       DACVWI010000283         2772 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.284, whole genome shotgun sequence.
ACCESSION   DACVWI010000283 DACVWI010000000
VERSION     DACVWI010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.284"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            25..555
                     /locus_tag="JBH85_14430"
     CDS             25..555
                     /locus_tag="JBH85_14430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947390.1"
                     /translation="MITIRLAEMNEIQFLNQLISCSARELSQEDYTKEEIEGAIQYVF
                     GVDLELILDKTYFVIEKDGQIAGCGGWSRRKTLFGGSQYKGREQGVYLDPQQDFAKIR
                     AFFIHPKFARQGLGSSLLKHCEHEAFLQKFTRFEMMATLPGVKLYSAFGYHPTSNEVI
                     TLPNNVPLRFVRMTKG"
     gene            807..>2772
                     /locus_tag="JBH85_14435"
     CDS             807..>2772
                     /locus_tag="JBH85_14435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947391.1"
                     /translation="MKEQQKAIFIENIKSTCAVDEQMAKELADSLLEIHQLNTGVNEQ
                     TLVNEVFLTKFALYLKIGKEVALDWVRKNKDLDTPFPSNTVENQPAQDAKKPVENKVQ
                     VYGAMTVGSSPVNKTLNRLTNDLLKEVVERGKTQKAQKLRAYIFDQLARRLEASLSQE
                     QINDLYNRIRGTGDYTKSESFSEEQLKILKEKVVPELKRELSDLSNGNVNILGLDVSR
                     EDKYAFDTTNIFSVWFSNNPAVYMPQHVKTQVEKTAKLNQPGKTRIVFSSLCLNETAQ
                     IDFQQWAKENNIELVDIDSIDLKSVSETDAQLLNLAKDELEAMRKGKGGNPAAASDLV
                     RWVDVIIGESSTYIDIDLPMNDKKVTVEVHSGFPVLLNMGSALTKDGQQPAMENPAFN
                     TDMIAYSKDKEARRQIIEGVAKKIIARYENCAKYIEESKNEELVRLKNTPGYQFLVKK
                     TDGKFDLCTLRAAVSEAHQDALSFATFFGAEYFAKTFATQELVPVIKEAIQHQNQDLL
                     TSVIENHIEKQHLNDYPKTPDGIKKLLKSFQGIVYKPLVMEFSGPSAVSSSWVEAISG
                     RSIPRNFEYLAEPMSQPLRVLQHHACVSGKANFSSDNIPKWCELQSDVEKRQLQREDG
                     LSWLPDAQEKLKREGQQAKLEEEQRIKLEEE"
BASE COUNT          941 a          441 c          577 g          813 t
ORIGIN      
        1 acacagattt gcaggaggtt accaatgatt acaatcagat tagctgaaat gaacgagatt
       61 caatttttaa atcaattaat ttcttgttca gcaagagagc ttagccagga agattataca
      121 aaggaagaaa ttgaaggagc cattcaatat gtatttggtg tagacttaga gttaatttta
      181 gacaaaactt attttgttat agaaaaggat gggcaaattg ctggttgcgg aggatggagt
      241 cgaagaaaaa cattattcgg tggcagtcaa tataaaggca gggagcaagg agtatatctg
      301 gatcctcaac aagattttgc aaaaataaga gcttttttta ttcatcccaa attcgcaaga
      361 caaggattgg gaagttctct gttaaaacat tgtgaacatg aggctttttt acaaaaattt
      421 actcggtttg agatgatggc cactttaccg ggagttaagc tctatagcgc ttttggttat
      481 caccctacct caaatgaagt gattactctc cccaataatg ttccgttaag atttgttcgg
      541 atgacgaaag gttagatggt aattcatttt atactgtctg gagtcattat tgactcatgg
      601 ttattgaaac ttaatttatc gtcataatgt taggaacggt tatcttaatg aatacaatcc
      661 gattagatta ataacgtaat ttaagtttta cttaagttat ttatgatata ttcatgacca
      721 ctttgtaaac atttagttta tttttggtgt tttctccagt tgagacaaca ggaaaaattt
      781 agattataac caggtgggat aaatatatga aagagcaaca aaaggcaatt tttattgaga
      841 atatcaaatc gacatgcgct gttgacgagc aaatggctaa agaattggct gattcattgc
      901 ttgaaattca ccagttaaac actggagtta atgaacaaac actggttaat gaggtgtttt
      961 taactaaatt tgctctctat cttaaaattg ggaaagaggt tgctttagat tgggttcgaa
     1021 aaaataagga cttggatact ccctttcctt ctaatacagt cgaaaatcag cctgctcaag
     1081 atgcgaaaaa gcctgttgag aacaaggttc aagtatatgg agctatgaca gttggcagtt
     1141 ctcctgttaa taagacttta aatcgattaa ccaatgatct tttgaaagag gtcgttgaac
     1201 gtggaaagac tcagaaagct caaaaattac gagcttacat attcgatcaa ttggcaaggc
     1261 gattagaagc ttcgcttagc caagagcaga ttaacgattt atataacaga ataagaggca
     1321 ctggtgacta tactaaaagc gaatcatttt ccgaagaaca acttaaaatt ttaaaagaaa
     1381 aagttgttcc agaattaaag agagagctaa gtgacctcag caacgggaat gttaatattc
     1441 tggggttgga cgttagtcgt gaagataaat acgcatttga tacaaccaat atattttctg
     1501 tctggtttag caataatcca gcggtttaca tgccacaaca tgttaaaact caagtagaaa
     1561 aaactgcaaa acttaaccag ccaggcaaaa ctcgaattgt ttttagctca ttatgcttga
     1621 atgagacagc gcagattgat tttcagcaat gggcaaagga aaataacatt gaattggttg
     1681 atatagattc aatagattta aaatcagtca gtgaaactga tgctcaattg ctaaatctag
     1741 ccaaagatga gcttgaagca atgagaaagg gcaagggagg aaatcctgcc gcagcatctg
     1801 atctggtgcg ttgggttgat gtaatcattg gagaaagcag tacttatatt gatattgatt
     1861 taccaatgaa tgataaaaaa gtcacagttg aggttcattc cggtttccca gttctactta
     1921 atatggggtc agcgctcaca aaggatggtc aacagcctgc tatggaaaac ccggctttca
     1981 atactgatat gattgcttat agcaaagata aagaggcacg tcgtcaaata atcgaggggg
     2041 ttgccaaaaa gatcattgcg cgttatgaaa actgcgcgaa atatattgag gaaagtaaaa
     2101 acgaagagtt agtacgttta aaaaatacgc caggttatca attccttgtt aaaaaaacag
     2161 acggcaaatt tgatttatgt actttaaggg cggcagtttc agaagctcac caggatgctt
     2221 tgtcgtttgc aacttttttt ggcgctgagt attttgctaa aacttttgct acacaagaac
     2281 ttgtacctgt aattaaagag gcaattcagc atcaaaatca agatttgctt acatctgtta
     2341 ttgaaaatca tatagaaaaa caacatctca atgactatcc taagactccc gatggcatta
     2401 aaaaactatt gaagtcgttt caagggattg tctataaacc attggttatg gagttctcag
     2461 gcccaagtgc tgtctcatca tcttgggtgg aggctatatc tggaagatcc atcccgagga
     2521 attttgaata tttagctgaa cctatgtctc aaccattacg agttttgcag catcatgcct
     2581 gtgtatctgg aaaagctaat ttttcttctg ataacattcc taaatggtgt gaacttcagt
     2641 ctgatgtaga aaaacgacaa ctacaaaggg aagatggact ttcctggctt cctgatgctc
     2701 aagagaagct taagagggaa gggcagcaag ccaaacttga agaagagcaa cgaatcaagc
     2761 ttgaagaaga gc
//
LOCUS       DACVWI010000284         2767 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.285, whole genome shotgun sequence.
ACCESSION   DACVWI010000284 DACVWI010000000
VERSION     DACVWI010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.285"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            151..1230
                     /locus_tag="JBH85_14440"
     CDS             151..1230
                     /locus_tag="JBH85_14440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transcriptional activator/DNA
                     repair protein Ada"
                     /protein_id="HAU0947392.1"
                     /translation="MSGMVMFEINDQRKKEYYTALLSKNTCYEGIFYVGVKTTGVFCR
                     PTCPARKPKLENCEFFHTAQEALLASYRPCRRCQPLSHPNQVSDLVKHLVDAVEANPE
                     KRWKDSDFAALSVDVATARRQFKKRFGMTFVAYARARRMGMAMKQIREGDLVINAQID
                     AGYHSGSGFRDAFAKIMGAAPSHFNEQHKVLKASWLDTPLGPMLAVADENALYLLEFV
                     DRRGLEREVERLRNKTKAVIIPGDSPVLKAIQKEMELYFSGELRQFNTPIHLIGSPFQ
                     KKAWLALIDIPYGETRSYLQQAKVIGNPSAYRAVANANGANQLAIVVPCHRIINANGE
                     LGGYGGGVNRKHWLLEHERRHDRGC"
     gene            complement(1307..>2767)
                     /locus_tag="JBH85_14445"
     CDS             complement(1307..>2767)
                     /locus_tag="JBH85_14445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947393.1"
                     /translation="KTFFSQQAHSSLTLVNYVHHDGIGDFRHLLDFVSFFNNTPVLKE
                     IELICIVINSHKPGNPQSVYIKEQLESMNVTHKILIYDSINGHEDLRQEIQKNRPLRK
                     QLQHTIGIIDIALNTSYKLVIQEFCKNKPPTITIAEIDLYATYDQPSLASDPEKRIDK
                     SRYQADHVYIMGLGTGKVGLKLTGGLFNSPQKAREALQQISDKRIKNLLLDQVAEEPI
                     SQETINVFLQNNHFIPGYLQDIDTIFGFISIFATNHKLNEERKNLIFYLNNYQNLFKK
                     NYYDEDTGRRYSQFTDLLFDKHLPWHKVFASSGIRSITIYNYAGQKPTEEEITLNPEG
                     QQMTIITGIMLNDTDYQLLYDIPQHFVAASGDNTLENAINHGLLFLMQYKYQYHTVRE
                     IAKIAEQAKDTLGFSEEEIREFHAYFGEAHHLISYSNEKSTKARSLLQSIDLIRLSSN
                     MRKVCAYLIENENFLHQLPEILQTDLLNISKPGMKQ"
BASE COUNT          870 a          449 c          547 g          901 t
ORIGIN      
        1 ccagcctatg tttatcatca ggcaaaacat caaaacaggc atgggaatat ttctcatgga
       61 taactggcgc cttttctaat tttaaaaatt cactgtctga ttttcggctt caccatttta
      121 aagaagattt ataataatta gtaagaaagc ttgtcaggaa tggtgatgtt tgaaattaac
      181 gatcaaagaa aaaaggaata ttatactgct ctgttgagta aaaatacctg ctatgaaggg
      241 attttttatg tcggagtgaa aacaacaggt gttttttgtc gaccaacttg tcctgcaaga
      301 aaaccaaaat tggaaaattg tgaatttttt cataccgctc aagaggcttt attagcctct
      361 tacagaccct gtagacgttg tcagcctctg tcacatccaa atcaagtctc tgatttggtt
      421 aaacatttgg ttgatgcagt tgaggctaat cctgaaaaaa gatggaaaga cagtgatttt
      481 gcggccttat cagttgatgt tgcaacagca aggcgccaat ttaagaaaag atttggcatg
      541 acatttgtag catacgctcg tgccagaaga atgggcatgg caatgaaaca aatcagagaa
      601 ggtgatttag tgattaatgc gcaaattgat gctggatatc actcaggtag tggttttaga
      661 gatgcttttg cgaagattat gggagcagct ccatctcatt ttaatgaaca gcacaaagtt
      721 cttaaggctt cctggttgga tacaccttta ggtcctatgc tggctgttgc agatgaaaac
      781 gctttatatt tacttgaatt cgtcgataga agagggttgg aaagagaagt tgaaaggctg
      841 agaaataaaa ccaaagcagt cattatcccg ggagattccc cagtgttaaa ggctatacaa
      901 aaagagatgg agctttattt ttcaggagaa ctaagacagt ttaatacacc tatccattta
      961 attggcagcc cttttcaaaa aaaggcatgg cttgcgttaa tcgatattcc ctatggtgaa
     1021 acaagaagtt atctgcaaca ggcaaaagta ataggtaatc cgtcggctta cagggcggtg
     1081 gctaatgcca atggtgctaa tcaattagct atagtggttc cttgtcatcg gattatcaac
     1141 gctaatggcg aactgggagg atatggaggt ggtgtaaatc gtaaacattg gttacttgaa
     1201 catgaaagaa gacatgatcg aggttgctaa actaattttg ctacgctcaa aaaggagtat
     1261 agaataaaca tgttaaccta ccagaagctg tagtgattga taaaatttat tgtttcattc
     1321 ctggtttgct tatattcaat aaatcggttt gtaaaatttc aggtaattga tgtaaaaaat
     1381 tctcgttctc tattaaatag gcgcaaactt ttctcatatt ggaagacaaa cgtattaaat
     1441 ctattgattg taacaaagat ctggcttttg tagacttttc attactataa ctgataaggt
     1501 gatgggcctc accaaaatag gcatgaaatt ctcgaatttc ttcttcacta aaacctaaag
     1561 tatcttttgc ttgctctgca attttagcaa tttctctaac ggtatgatat tgatacttat
     1621 attgcattaa aaatagcaga ccatgattaa tagcattttc cagcgtattg tcacctgaag
     1681 ctgcaacgaa atgttgtggg atgtcataga gcaattgata gtcagtatca ttaagcataa
     1741 taccagtaat gatagtcatt tgctgacctt ccggatttag ggttatttct tcttcagtag
     1801 gcttttgacc agcgtagtta tagatggtaa ttgagcggat acctgaactt gcaaaaactt
     1861 tatgccaagg taaatgtttg tcaaacaata aatcggtgaa ctgtgagtag cgtcgccccg
     1921 tgtcttcatc ataataattt ttcttgaata gattttgata attgtttaaa taaaaaatga
     1981 gattttttct ttcctcattt aatttatgat tggtggcaaa aatactgatg aatccaaata
     2041 tagtatcgat atcctgaagg tacccaggaa taaaatgatt attttgtaaa aaaacgttta
     2101 ttgtttcttg tgaaatgggc tcttcagcaa cttgatctaa cagtaaattt ttaattctct
     2161 tgtcactgat ttgctgcaaa gcttctcggg ctttttgagg agagttaaat aatcctccgg
     2221 ttaattttag ccctaccttt cctgtcccca gccccattat gtagacgtga tcagcttgat
     2281 atcttgattt atcgatacgt ttttcaggat ctgaagccag agatggttga tcataagtag
     2341 cgtataaatc aatttcggct atagtgattg ttggtggttt gtttttgcaa aactcctgaa
     2401 taaccagttt ataagaggta ttcaatgcaa tatcaatgat tccaatagta tgctgtaatt
     2461 gttttcgtaa tggtctattt ttttgaattt cttgtcgtaa atcctcatga ccattaatgg
     2521 agtcgtagat caaaatcttg tgtgtgacat tcatgctttc caactgctct tttatataca
     2581 cagattgagg attacctggt ttgtgactgt ttataacaat acaaatcaat tctatctctt
     2641 ttaaaacagg agtgttatta aaaaaagaca caaaatcaag taaatgcctg aaatcaccaa
     2701 ttccgtcgtg atgcacataa ttaaccaaag taaggctaga gtgtgcttgc tgagaaaaga
     2761 aggtttt
//
LOCUS       DACVWI010000285         2753 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.286, whole genome shotgun sequence.
ACCESSION   DACVWI010000285 DACVWI010000000
VERSION     DACVWI010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.286"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(39..1364)
                     /locus_tag="JBH85_14450"
     CDS             complement(39..1364)
                     /locus_tag="JBH85_14450"
                     /EC_number="3.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HAU0947394.1"
                     /translation="MELVEEGVQKINTLQDYKVAEISLADWGRKEIAIAETEMPGLMA
                     LREEFSAKKPLQGARIAGCLHMTIQTAVLIETLVALGAEVRWSSCNIFSTQDHAASAI
                     AAKGIPVFAWKGETEEEYWWCVEQTLSGPNGWTPNLLLDDGGDLTQVVHQKHPKLLTA
                     IKGVSEETTTGVARLYEMAKHGQLKIPAINVNNAVTKSKFDNLYGCRESLLDGLKRAT
                     DVMIAGKVALILGYGDVGKGCAQALRGQGATVLVAEIDPICALQAAMEGYRVVTLDDV
                     AEQVDIVVTATGNYHVVTHDHMKRMRNQAILCNIGHFDSEIDIQSLKQYQWENIKPQV
                     DHVIFPDGKRIIILAEGRLVNLGCATGHPSFVMSASFTNQVLAQIELFQNSSQYQNQV
                     YVLPKVLDEKVARLHLGRIGAKLTQLSNEQADYIGVDKNGPYKPDHYRY"
     gene            complement(1383..2531)
                     /locus_tag="JBH85_14455"
     CDS             complement(1383..2531)
                     /locus_tag="JBH85_14455"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HAU0947395.1"
                     /translation="MNEVYVFTSESVSEGHPDKIADQISDAILDAILAQDPKARVACE
                     VLVKTGMVLVGGEITTKAWVDVEEITRHVIKDIGYNSSQMGFDWESCAVLSAIGKQSP
                     DIAQGVDNQQTKILGAGDQGLMFGYASRETDVFMPAPIAYAHRLMEKLAKARKSGQLP
                     WLRPDAKCQLTLKYEQGMPVEVDTVVFSTQHSPDIEHKDLVEAIREEIIKSVLPAEWL
                     NDKTRYFINPTGRFVIGGPLGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSA
                     AYAARHVAKNIVAAGLADKCELQISYAIGVAEPTSIFVDTFGTGRLKNSEIIDLIHTH
                     FDLTPQGIIDQHDLLRPIYRQTATYGHYGRESFPWERLDKVAELSKAL"
BASE COUNT          809 a          651 c          479 g          814 t
ORIGIN      
        1 gatttagtta tcttgactaa atcttgaata aaattagttt aataacgata atgatccggc
       61 ttgtaaggtc catttttatc aacgccgata taatcagcct gctcattact taattgagtt
      121 aattttgcac caatacgtcc caaatgcaaa cgggctactt tttcatccaa aacttttgga
      181 agtacatata cttgattctg gtattggcta gagttttgga acagctcaat ctgcgctaat
      241 acttgattgg taaaggaagc agacatgaca aagctcggat ggcctgtagc gcagcccaaa
      301 ttcactaaac gcccttcagc caggataata atccgctttc catcaggaaa aatcacatga
      361 tcaacctgcg gcttgatatt ttcccattga tactgtttta agctttgaat atcaatttcg
      421 gaatcaaaat ggcctatgtt gcacaatatc gcctgattac gcatacgttt catgtgatcg
      481 tgagttacaa catggtaatt gccagtagct gtaactacga tatccacttg ttcagcaaca
      541 tcatccagag tgactactct gtagccttcc attgctgcct gaagtgcgca aataggatca
      601 atttctgcga caagtacagt ggctccctgt ccgcgcaagg cctgagcgca acctttccct
      661 acgtcaccat agcctagaat caaggcaacc ttaccagcta tcataacatc tgttgcacgt
      721 tttaacccat caagcaggga ttcccgacat ccatacaaat tatcaaattt ggatttggtc
      781 accgcattat taacattaat ggctggaatt tttaattgtc catgtttcgc catttcgtac
      841 agcctggcta cacctgtagt ggtttcctca gatactccct taattgcagt cagtaatttg
      901 ggatgtttct ggtgaacaac ttgtgtcaga tccccgccat catctaataa taaattaggt
      961 gtccaaccat tggggccact taaagtttgc tcaacacacc accaatattc ttcttctgtt
     1021 tcgcccttcc aggcaaaaac agggattcct tttgcagcaa tagcggaagc tgcatgatcc
     1081 tgagtagaaa aaatattgca ggaagaccag cgtacttcag cacccaatgc aaccagggtc
     1141 tcaatcaata ctgcggtttg aatcgtcata tgcagacaac ctgcaatccg agcgccttga
     1201 agtggttttt tcgcagaaaa ttcctcgcgt aaagccatta aacccggcat ttcggtttca
     1261 gctatcgcta tttcttttcg cccccagtcc gctaatgaaa tctctgctac tttataatct
     1321 tgtaatgtat tgattttctg tactccttct tctaccagtt ccattagagt atccttaaaa
     1381 aattataatg ccttgcttaa ttcagctact ttgtccaatc gctcccatgg aaaactctcc
     1441 ctgccatagt gcccataagt tgccgtctgc ctataaatag gacgaagcaa atcgtgttgg
     1501 tcgataatac cttgcggtgt taaatcaaaa tgcgtatgaa ttaaatcaat tatttcgctg
     1561 ttttttagtc gtccagtacc aaaagtatca acaaaaatag atgtaggttc agcaacacca
     1621 atagcatagg aaatctgtaa ctcgcattta tccgccaaac cagccgccac aatattcttg
     1681 gcaacatgtc ttgcggcgta tgctgcggag cgatctacct tcgaaggatc tttacctgaa
     1741 aaacagcctc cgccatgtct tgccatacca ccataagtat caacaatgat tttacggccg
     1801 gttaagccac aatcgcccaa aggaccacca attacgaagc gtcctgtcgg attaatgaaa
     1861 taccgggtct tatcattgag ccattcagca ggaagaactg atttaataat ttcttcacgg
     1921 atcgcctcaa ccaaatcttt atgctcaata tcaggtgaat gctgcgtaga aaaaacaaca
     1981 gtatccactt caaccggcat cccttgttca tatttcaaag taagttgaca ttttgcatca
     2041 ggtcttaacc agggtaattg gcctgattta cgagctttag ctaatttctc catcaaacga
     2101 tgcgcatagg caataggggc aggcataaaa acatctgttt cacggctggc ataaccaaac
     2161 ataagtccct gatcgccagc acccagaatt ttagtttgct gattatcgac accttgagct
     2221 atgtctggtg attgcttgcc aatcgctgaa agcacagcac aagattccca atcaaacccc
     2281 atctgggaac tattatagcc aatgtccttg ataacatgac gagttatttc ttcaacatca
     2341 acccaagctt tcgtcgtaat ttctccacca accaaaacca tgccggtttt aaccaatacc
     2401 tcacaagcca ctcgtgcttt tggatcttgg gctaaaatag catctaaaat ggcatctgaa
     2461 atttgatcag ctatcttatc aggatggccc tcggaaacag actctgaggt aaaaacatag
     2521 acttcattca ttacatatcc tctgtatttt ctatttttag tatccctaat ctttatctct
     2581 gcttaaaaca caaaacaagt taaagtcatt gttttggtaa atccatgcca ttttactaat
     2641 ctttaatagc catggatagc atttaggggt attacaatca ttgtaagcag gcttaaaaca
     2701 agccactctt gccaaaataa taattctgaa gctaaaaatt tatttcatca gat
//
LOCUS       DACVWI010000286         2751 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.287, whole genome shotgun sequence.
ACCESSION   DACVWI010000286 DACVWI010000000
VERSION     DACVWI010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.287"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            273..998
                     /locus_tag="JBH85_14460"
     CDS             273..998
                     /locus_tag="JBH85_14460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HAU0947396.1"
                     /translation="MSNPCNKILLVLRKIMKPIAHIADKEIISIPVKECGEELIDLKN
                     QNIIVYGPPPETPLTANDYTKIRKTVYQKLCLAQNDLPNGWRFRLYEGLRSLAVQEIL
                     FNQQRDNLRQSKEYDSYEDLFNETCRLVSPVVHLDGTANIPPHSTGAAIDIELIDSYG
                     NLINLGMAAKDWLIVDPDLSETYSKLISEEAMQNRILMLKIMAKHGFVNYPREWWHFS
                     YGDRLWAYMTEHSTAIYGAIINN"
     gene            1081..1809
                     /locus_tag="JBH85_14465"
     CDS             1081..1809
                     /locus_tag="JBH85_14465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947397.1"
                     /translation="MTPSISLITSYSLLPAILMLIGGGIASLYRPGGSITSATQHFAA
                     GVVFAAVAKELLPKIGAYHDPLALIIGFSVGILAMLFLKWLANRLEDLEQEKTGLSWG
                     LLTAVGIDLLIDGILIGVAFLAGERGGILIAIALAIEIFFLGLSTTATLGARQVNVPI
                     RLLTSVILAILIPVGAALGASLLIHLPLSITNGILSFGVAALLYLVTEELLLEAHGVR
                     ETPYITLCFFIGFLLILLLEGLAA"
     gene            complement(1888..>2751)
                     /locus_tag="JBH85_14470"
     CDS             complement(1888..>2751)
                     /locus_tag="JBH85_14470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylamine N-acetyltransferase"
                     /protein_id="HAU0947398.1"
                     /translation="YLAHIKVFPYSNFELRRIANQHPVQRQSLSFFNYTKLLSSEHGG
                     YCYQSAGLLFDALVQLGFKTEYCAARVLVGEPVNSPKVLAIPATHLVLVVTVGDKKFL
                     LDPGLGASAPRLPILITEKDESILQGKEEFKFYKQDGVHVLERKTSQGWFRLMQTDLI
                     PIDLKTVELNLLKLERYPDTISIRDNKTIVGSITEYGRKSLIWDAQSNQLKFSKHDGD
                     EVIQKTLTSFEEGVQTLVKEFDIDHISAQELKIYCTETNLPQPIKPWTVDLPLDQAEL
                     KRMEENLIFRL"
BASE COUNT          814 a          555 c          520 g          862 t
ORIGIN      
        1 accgttataa tacgagttta ctcttattta tcaatcaatt acacacttat tcgaaggacc
       61 gatttcaagt tgaccatctc ctggatgccg cgaacaagtc gcggcacgta ggcgttggga
      121 gccaattgtc aacacgccct agagtttgag ccataattcc cttaaatggc taattgcaga
      181 ttgttaggtt ttatcagaaa aattttaaat aattaaagca taaggcctaa cctgcttttt
      241 tgttagcatg atataattaa tgtgcggata acttgtcgaa tccatgtaat aaaattttgc
      301 ttgttttgcg aaaaataatg aaacccatag cacatatcgc agataaagaa ataatatcta
      361 tccctgttaa agaatgcggc gaagagctca ttgatcttaa aaaccaaaat attattgttt
      421 acgggccccc tccagaaacc cctttaaccg caaatgacta caccaaaata cgtaaaaccg
      481 tatatcaaaa attatgtttg gcacaaaatg acctgcccaa tggctggcgt tttagactat
      541 atgaaggatt acgcagtctg gctgttcagg aaattctgtt taaccaacaa cgtgataacc
      601 tacgtcaaag caaagagtac gattcctatg aggatttatt taatgaaacc tgtcgtctgg
      661 tttctccagt agtccatttg gatgggacag ctaatatacc accacatagc accggggccg
      721 caatcgacat tgagctcatt gatagctatg gcaatctgat taatcttgga atggctgcaa
      781 aggactggtt aattgttgat cctgatttaa gtgaaaccta ttcaaaactt atttctgaag
      841 aagctatgca aaatcgtatt ctgatgctga aaataatggc taagcatggt tttgttaatt
      901 accccagaga atggtggcat ttttcctatg gagatcgcct atgggcctat atgacagaac
      961 attctactgc catctatggt gctatcataa ataattaagc caatgcggca atgcctgcca
     1021 ttcttgaact gggctaatta tttgattatt ctgtcaatat taccttaaag aatatctctt
     1081 atgaccccat ctatttcgct tattacctcc tattctttat tacccgccat attgatgtta
     1141 atcggtgggg gcatcgcaag cctttaccgt ccaggtggtt caataaccag cgcaacccaa
     1201 cattttgcag caggtgttgt ttttgctgct gtagcaaaag aactgctacc caaaatcgga
     1261 gcataccatg atcctcttgc tcttattatc ggcttttcag taggcattct ggccatgtta
     1321 tttctaaaat ggttggctaa caggctcgaa gatcttgaac aagaaaaaac aggtctatcc
     1381 tggggattat taaccgcagt tggaattgat ttattaatag atggtatttt aattggggtt
     1441 gcttttttgg ctggtgaacg aggaggaatt cttatcgcta ttgcccttgc cattgaaatt
     1501 ttctttttgg gattatcgac gaccgccact ttaggggcaa gacaagtgaa cgtgccaatt
     1561 cgtctgttaa ccagtgtcat tttggccata ttgatccctg tgggagctgc tctgggcgcc
     1621 agtttattaa ttcatttacc actatcgatt accaatggaa ttttatcatt tggtgttgcg
     1681 gcattacttt atctggtcac tgaggagtta ttgcttgaag cccatggggt tcgtgaaacc
     1741 ccttacatta ctttatgttt tttcattgga tttttgttga ttttattgtt agaagggctg
     1801 gcagcataaa tgcaagcagg tattttaata aaaacataag ctatgatgag ctgaaccagc
     1861 ttggaaaaac aaatacaaat cacttttcta tagtctaaaa attaaatttt cttccattct
     1921 ttttaactct gcttgatcaa gggggaggtc cacagtccaa ggttttattg gctggggaag
     1981 attcgtttca gtacagtaaa ttttcaactc ttgcgctgaa atatgatcga tatcaaactc
     2041 cttaacaagt gtttgcactc cctcctcaaa actggttaaa gttttttgaa tgacttcatc
     2101 accatcatgt tttgaaaatt tcaattgatt cgattgagcg tcccaaatca acgatttacg
     2161 tccatattcc gtaatagatc caacaatcgt tttattgtct cgaatagaaa ttgtatccgg
     2221 ataacgttcc aatttgagta agttcagctc taccgttttg agatctatgg ggatcaaatc
     2281 agtctgcatc aagcgaaacc acccttgact tgttttcctc tccagaacat gcacaccatc
     2341 ctgcttataa aatttaaact cttctttacc ttgtaaaatg gactcgtctt tttctgttat
     2401 caatattggg agccttggag cagaagcgcc caatcccgga tccagaagaa attttttgtc
     2461 tcccacagtc acgactaaaa caagatgagt agcaggtatc gcaagtacct taggggagtt
     2521 cacaggttcg ccaacaagaa cacgcgccgc acaatattcc gtcttaaatc ccaattgcac
     2581 taatgcatca aacaacagac ccgcactttg gtaacaatac cccccatgct ctgaagaaag
     2641 cagctttgta taattaaaaa aagacaagga ttgtctttgg acaggatgtt gattagcaat
     2701 tctgcgtaat tcaaaattgg aataaggaaa aactttaata tgtgctaaat a
//
LOCUS       DACVWI010000287         2696 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.288, whole genome shotgun sequence.
ACCESSION   DACVWI010000287 DACVWI010000000
VERSION     DACVWI010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2696
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.288"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(23..94)
                     /locus_tag="JBH85_14475"
                     /pseudo
     CDS             complement(23..94)
                     /locus_tag="JBH85_14475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094533.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
     gene            complement(167..313)
                     /locus_tag="JBH85_14480"
                     /pseudo
     CDS             complement(167..313)
                     /locus_tag="JBH85_14480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095345.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(413..1051)
                     /locus_tag="JBH85_14485"
     CDS             complement(413..1051)
                     /locus_tag="JBH85_14485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HAU0947399.1"
                     /translation="MSDVLNNYYLQTMGIEVWVMRESTPSCEKHLAALADEVASCVRC
                     SLHKTRTQTVFSRGNPKAKLMIIGEAPGFYEDQKGQPFVGKAGLLLNKMIRSIEMTEN
                     DIYIANVLKCRPPNNRDPALEEISQCSSFLTRQIQLIKPHLILALGRFAGQFLLDKPL
                     PLKQLRNHIHYYDNTPFIVSYHPAYLLRNPSDKKKAYIDWLAVKNFLLDYGQ"
     gene            1308..2582
                     /locus_tag="JBH85_14490"
     CDS             1308..2582
                     /locus_tag="JBH85_14490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0947400.1"
                     /translation="MNSQKDLKQLDIKQVIAWAFYDFANSSYFVVIFTFVFATYFTSY
                     IAPNTILGTELWGYTISVSALLIALVSPIVGAIADFSGHHKSWLFVFTYLGVISTGCL
                     WFAYPDSHSIPLVLTCILISNFALEVGTVFYNSFLANLAPENYLGRISGWAWGCGYLG
                     GLLCLILSLFVFVKGELGGLWFGTENFANIRAVTVFVALWISLFSLPLFLMVQQKTGE
                     HLTVGTAIRKGLQELRLTIKSLPKQRDLFLFLIARIFYIDGLNSILALGGIYAAGNFH
                     LSVSDIMVFGIILNITAGLGAGLFAWFDDWIGSKKTILIALACLTLTFCFLLTIHSNA
                     LFWVFAPVFGIFVGPVQAASRTFLARLAKPEEMTRMYGFYSFSGKATSFLGPFLVSTT
                     TALADSQRLGMAVLIPFFIIGGGLLLLVHENE"
BASE COUNT          725 a          478 c          571 g          922 t
ORIGIN      
        1 gttcccagac ccgcttaatt caatcagatg ttgagccaac atatagggtg ccattgcgct
       61 tacttgccat aatataggca taaaatgatt tcatttttct tccttgttat cgagttttgg
      121 actcggttcg ataatatcat tcaaattatg tgggttacat aggaagctaa atatatgagc
      181 atgccattgc tagcgttgaa gcataattcc gttttaactt atcgtacctt gttgcaatag
      241 cacgaaactg tttaagtctg acaaatatat tttcaactag gtgacgatat ttatataaac
      301 cccaatcaac ttcagctatt cgaaggaccg atttcaaatt gaccatctcc tggatgccgc
      361 gaacaagtcg cggcacgtag gcgttgggag ccaattgtca acacgcccta gtttattggc
      421 cgtaatccaa cagaaaattt ttcacagcta accaatcaat ataagctttc tttttatccg
      481 agggattgcg caaaagatag gcagggtgat agcttacgat aaaaggagta ttgtcatagt
      541 agtgaatatg attacgcagc tgcttcagag gaagtggttt atcaagtaag aattgtccgg
      601 cgaaacgtcc taacgcaagg attaagtgtg gtttaatgag ttgaatttgg cgagtcagga
      661 atgaactgca ttgagaaatt tcctcaaggg ctggatcacg attattaggg gggcgacatt
      721 tcaaaacatt ggcaatgtag atatcattct ctgtcatttc aatactacgt atcatcttgt
      781 ttaataaaag cccagccttt cccacaaaag gttgtccttt ctgatcctca taaaaaccag
      841 gcgcttcacc aataatcatc agttttgctt ttggattccc acgagaaaaa acagtttggg
      901 tgcgtgtttt atgaagagaa caacgtacac aggatgccac ttcatccgct aaagccgcta
      961 aatgcttttc acaagaagga gtggactcac gcatcaccca gacttcaatt cccatagtct
     1021 gtagatagta attgttcaat acatctgaca taaaaaactc atgatattaa taaaatccgg
     1081 attatagatt agacttacct tttgtagctt ggtacttacg cacctccaat ctctttgtta
     1141 aagacattat ttgccttggc cttggagttt tgcttaagtc ctatagttaa tctattgtat
     1201 cagtcctatt ttaaagaaag aaacttaaaa aaacatcata tactcactgc ctgtaagaaa
     1261 tagagagttg agggggtgaa gaatattaaa cagagactgg aaagaatatg aatagccaaa
     1321 aggatttgaa acaattagat attaagcaag tgattgcctg ggcattctac gattttgcca
     1381 attcttccta ttttgtggtg atatttacgt ttgtctttgc aacctatttc acaagttaca
     1441 ttgcccccaa tactatcttg ggaaccgaat tgtgggggta tacgatttca gtttctgcgt
     1501 tactcattgc tctggtgagt cctatcgttg gtgcaatagc tgattttagt gggcatcata
     1561 aatcctggct attcgttttt acctatttgg gcgttatttc aacaggttgc ttgtggtttg
     1621 cctatcctga cagccattct attcccttgg ttttaacttg tattttgatt agcaattttg
     1681 cattggaagt aggaactgta ttttataatt cctttttggc aaatttagcc ccggaaaact
     1741 atctggggcg gatttctggc tgggcttggg gttgtggtta tctgggagga ttgctgtgcc
     1801 tgattctatc cttatttgtt tttgtgaaag gtgaacttgg tggattatgg tttgggacag
     1861 agaattttgc caatattcgt gctgtcactg tatttgtggc tttatggatt agtttgttta
     1921 gtttgccttt gtttttaatg gtgcaacaga aaacaggaga gcatttgaca gtgggtactg
     1981 cgattaggaa aggtctgcaa gaattgcggt taacaataaa aagcctgcct aaacaacgtg
     2041 atctgttctt atttttaata gccagaattt tttatatcga tgggttgaat tctatattgg
     2101 cactaggcgg tatttatgcg gctggcaact ttcacttgag tgttagcgat attatggtgt
     2161 ttggaatcat tttaaatatt actgcaggtc ttggcgccgg attattcgcc tggtttgatg
     2221 attggattgg atctaaaaaa actattctaa ttgctttagc gtgcctgaca ctcacttttt
     2281 gttttctgtt aaccatccac tcaaatgcgt tattttgggt ttttgcaccg gtgtttggta
     2341 tttttgttgg tcctgttcag gctgccagtc gtactttctt ggctcgtttg gcaaaacccg
     2401 aagaaatgac gcgaatgtat ggtttttact ctttttctgg taaggcaacc agttttttag
     2461 gacctttcct ggttagtaca accactgctt tagctgacag tcagcgtttg gggatggctg
     2521 ttcttattcc tttttttatc atcggaggcg gactattatt attggttcat gaaaatgaat
     2581 aagaaaaatt ccggtaaggc tgattttccc tgttttgagg ttcagtatga gtttgaaaga
     2641 caggggaaaa attcgcctct ttgtttttac aagttatttc ttatgataaa ctttgt
//
LOCUS       DACVWI010000288         2689 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.289, whole genome shotgun sequence.
ACCESSION   DACVWI010000288 DACVWI010000000
VERSION     DACVWI010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.289"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            2..736
                     /locus_tag="JBH85_14495"
     CDS             2..736
                     /locus_tag="JBH85_14495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3865 domain-containing protein"
                     /protein_id="HAU0947401.1"
                     /translation="MELILILTGGFMIREYMDKRNNQFTTEILNYFSDLKKFSTSYLE
                     WITMEHYQFSLNNTRFLMNSHIQTKSLSDPGVSEELLANYNEEKNHAQMYRHALKKIG
                     LDVTNRIPYVATRQFFMRLEALIVINASKTLGVMYATETAAIFEHILFKEISAELCQR
                     KGLDFENSRIKQFHDLHLDGVEQAHKDELGKFMDHTLAEEHVDPNIFLQEKEIMDGAY
                     AAIDIMEDWWSGLINAKAHLLEQAHA"
     gene            729..1463
                     /locus_tag="JBH85_14500"
     CDS             729..1463
                     /locus_tag="JBH85_14500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAU0947402.1"
                     /translation="MLNKLMWLTGKAQEDWIEKILHLRQKIWPDYQRIKNDTLFKLYS
                     HYPLYQWLSHYNGEVVAVINSLPVALDQSLDNLPQEGLNWVLSHLESTTPLTQSNYLA
                     AVSVTVNPAYQRLGLSKLLLNRLKASAQEAQYKALIVPARPSQKENYPLISLEDYLKW
                     KRVDNTIFDPWLRVHAQLGGKIAYPCQRSRVITANVAQWEQWLGHPLLQTGQYLVKGG
                     LNPITINKEKDIGIYIEPNVWVIHDL"
     gene            1589..2482
                     /gene="prpB"
                     /locus_tag="JBH85_14505"
     CDS             1589..2482
                     /gene="prpB"
                     /locus_tag="JBH85_14505"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HAU0947403.1"
                     /translation="MSNFRYSQGKKLREALMNEKPLQVVGTINAYTALQAKRAGFHAI
                     YLSGAGVANASYGLPDLGITTLNDVLEDVRRIMSAVDLPLLVDIDTGWGGAFSIARTI
                     KEMIKAEAAAVHIEDQVQAKRCGHRPGKALVEKEEMIDRIKAAVDAKTDPDFVIMART
                     DALANEGLNKALERISAYIEAGADMIFFEGVRKLEEYQALTEQCNVPVLANITEFGVT
                     PLFTLEELEEVGVSLALYPLSAFRAMSAAAEKVYDTIRKNGSQNDILAEMQTREELYQ
                     VLNYHFYEDKLNELFMKEKTT"
BASE COUNT          897 a          474 c          558 g          760 t
ORIGIN      
        1 cttggaattg attttaatac tgactggagg cttcatgata agagaataca tggataagag
       61 aaacaaccaa tttactaccg aaattttaaa ttattttagt gacctaaaaa aattttcgac
      121 gagttatctt gaatggataa ccatggagca ttatcagttt tcgttaaata atactcgttt
      181 tttaatgaat tctcatatcc aaaccaagtc gctttctgat cccggagttt ctgaagagtt
      241 actcgctaac tataacgaag aaaaaaatca tgctcaaatg tatcggcatg cactaaaaaa
      301 aatcggcctg gatgtaacaa acaggattcc gtatgtggca accagacagt tttttatgcg
      361 ccttgaagcc ttgattgtga ttaacgcatc caaaaccctt ggcgttatgt acgctactga
      421 aacagctgca atatttgagc atattttatt taaagaaata agcgccgagc tttgtcaaag
      481 aaaaggtttg gattttgaga attctcgcat caagcaattc catgatttac acctggatgg
      541 agtagaacag gcgcataaag atgagttagg caagtttatg gatcatacgc ttgctgaaga
      601 gcacgttgat cccaatattt ttctccagga aaaagaaata atggatggcg cgtatgcggc
      661 gatcgatata atggaagatt ggtggtccgg tttaattaac gcaaaagcac accttttgga
      721 acaagctcat gcttaacaaa cttatgtggc taactggcaa ggcgcaagaa gactggatag
      781 agaaaattct acatttacga caaaagattt ggcctgatta tcaacgcatc aaaaatgaca
      841 ctctttttaa gctctatagt cattatcctt tataccaatg gctatctcac tataatggtg
      901 aggtagtagc tgttattaat tctttgccag tagcgcttga tcaatcactc gataatttgc
      961 cacaagaagg attaaattgg gtcctgtctc atctggaatc tacaacaccc ttaacccaat
     1021 caaattatct tgctgctgta tcagtgacag tgaatccggc ttaccaaaga cttggtttaa
     1081 gcaaactctt attaaatcgg ttaaaagcca gtgcacagga ggctcaatat aaagcactaa
     1141 tagtgccagc cagacctagc caaaaagaaa actacccgct tatttcccta gaggattatt
     1201 tgaagtggaa aagagtggat aatactattt ttgatccttg gttaagagtt catgcacaac
     1261 tgggaggaaa aatagcttat ccatgccagc gatcacgcgt gatcacagcg aatgttgctc
     1321 agtgggaaca atggctcggt catccattgc ttcaaacagg tcaatatctt gttaaaggcg
     1381 gattaaatcc tataactatc aataaagaaa aggatattgg aatatacatt gagccaaatg
     1441 tttgggttat tcatgatttg taattgattt ttgccatctc tcatttagat aaactaaatg
     1501 accgaattaa aaactttttt taacaaagag attgggattt ttcgtaagtc ctgataaatt
     1561 ctcatcttag gcaaaacaag gaaaccaaat gtcaaatttt cgatacagcc agggaaaaaa
     1621 actacgcgaa gcgttaatga atgaaaaacc attgcaagtt gtaggaacaa ttaatgccta
     1681 taccgctttg caagccaaaa gagcaggatt tcatgcaatt tatctttcag gagcaggagt
     1741 agctaacgcc tcttacggct taccagactt gggcattacc acattaaatg atgtactcga
     1801 agacgtacgg cgcattatga gtgccgttga tttacccctc ctggtcgata ttgatacagg
     1861 atggggtgga gcctttagta tcgcacggac tatcaaagaa atgattaaag ctgaggcagc
     1921 agcggtacat attgaagatc aggttcaagc gaaacgatgt ggtcatcgcc cgggtaaggc
     1981 attggttgaa aaagaagaaa tgatagatcg tattaaggcc gctgtggatg cgaaaactga
     2041 tcctgatttt gttattatgg caagaactga tgccctggcg aatgaaggat taaataaggc
     2101 gctggagcga attagtgctt atattgaagc cggggcagat atgattttct tcgaaggagt
     2161 acgtaaactt gaggaatatc aggcgctaac tgagcaatgt aatgttccgg tattggccaa
     2221 tatcactgaa tttggagtta ctccattatt tacgctggaa gaattagagg aagtaggagt
     2281 tagcctggct ctttatcctt taagtgcatt tcgggcaatg agtgccgctg cagaaaaagt
     2341 ttacgacaca atccgcaaaa acggcagcca aaacgatatt ctggcagaga tgcaaactcg
     2401 cgaagagttg tatcaggtat taaattacca tttttacgaa gacaagctta atgaactctt
     2461 tatgaaagaa aaaacgacgt gaatatcaat taattatcag aactaatctg agaaaataag
     2521 gttttatatg cccggataga ggattatctg ccgaaattga tgtttataaa caacagatta
     2581 actctctatc cagacaggca ttcaaaagca atccatttaa aatttgataa agttattgca
     2641 aaagaaaagc aattctattt atagttttgg gataagtgat ttgttgaaa
//
LOCUS       DACVWI010000289         2687 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.290, whole genome shotgun sequence.
ACCESSION   DACVWI010000289 DACVWI010000000
VERSION     DACVWI010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.290"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(106..513)
                     /locus_tag="JBH85_14510"
     CDS             complement(106..513)
                     /locus_tag="JBH85_14510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947404.1"
                     /translation="MTKLGLGSASSPRMLFVRAIQPQTWIVPCMPFWLSLISFFSSSL
                     LSMFISSSLTLTIPISLALFRMKLPDSCLPISKSTTFTCVNFSTLSFELRTPSLPMTH
                     VELGYYERNHRYSNSPVTKPINAFRSLTTRTIT"
     gene            734..2236
                     /gene="ltrA"
                     /locus_tag="JBH85_14515"
     CDS             734..2236
                     /gene="ltrA"
                     /locus_tag="JBH85_14515"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAU0947405.1"
                     /translation="MQMTTSQTNDADAAPTTIKWQTINWLACHEEVKKLQRRIAKATR
                     EKRWRKVNSLQWLLTHSFSAKAIAVKRVTENKGKRTAGVDGKIWSTPEAKSKAITQLK
                     RRGYKPYPLKRVYIPKSNNTKRPLGIPVMRDRAMQALYLLALEPVSETTADWNSYGFR
                     PRRSTHDAISHLFVMLARKGAAQWVLEGDIKGCFDTISHEWILNNVMLDKRMLQHWLK
                     AGYIDKGHLFPTQEGTPQGGIISPTLANLVLDGLETLLATKFGSLKHDGHASRTSKYQ
                     VHFVRYADDFVITGKSKTLLEDEVKPLIKDFLAQRGLKLSEQKTKVTHITHGFDFLGQ
                     NIRKYRLGKANEKLLIKPSANNVKALKLKVKTMITKLCTAKQEEVIGVLNPIIRGWAN
                     YHHHIVAKETFTKVDHFIWRSLRCWACRRHPNKNLRWVKQRYYLAIENRRNMTFACRS
                     NETGKKAKLLTLCHAADTKIIRHNKIVGAANPYHPQYDDYFKKRSCERYL"
     gene            2472..>2687
                     /locus_tag="JBH85_14520"
     CDS             2472..>2687
                     /locus_tag="JBH85_14520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HAU0947406.1"
                     /translation="MDSINWHTFRFELEIEKNLDHRTPFEKDKCKVVHSYSFRRLQGK
                     IQIVSGKDSDFHRNRLTHSIEVASIAKS"
BASE COUNT          897 a          510 c          584 g          696 t
ORIGIN      
        1 cattattctt cattaaatat tagactaaag aatatatttt tggtttaaat ttcaacattg
       61 caaggcaatg tatattgcgc ccttaggtgc gactcgatgg gtcgtctatg tgattgtacg
      121 ggtagtcaaa ctacggaatg catttattgg tttcgttacg ggactattag agtacctatg
      181 attccgttca tagtagccta attcgacgtg cgtcattggt aacgatggcg tgcgaagctc
      241 gaatgacaat gtactgaagt ttacgcatgt aaacgtcgtg gatttgctga taggtaaaca
      301 cgaatctgga agcttcatcc ggaataaggc taggctaatg ggtatggtta atgtaagtga
      361 actgctgata aacatcgaaa gcaatgatga gctaaagaag ctgataagcg aaagccaaaa
      421 tggcatgcat gggacaatcc aggtttgagg ttggattgca cggacaaaca acatgcgcgg
      481 tgaagaggcg gaacctaacc ccaattttgt catgtagacg gaacgaggta aacccgactc
      541 agtgccttag caattttaag taaggcaggt taaccgcaag gaaaactgat gctgaagcgg
      601 gcagaagata gactaaaaag caaacgctct tctgtaatgg aaaagatagg aacgactgtt
      661 ctatggtgaa agccagccca cttggtcttg gtcaacattg cgagagacta gcagaatttc
      721 tttttaagga gacatgcaaa tgactacatc acaaactaac gatgcggatg cggctcctac
      781 tactatcaaa tggcaaacca ttaactggtt agcatgtcat gaagaagtta agaaactgca
      841 acgacgtatc gcaaaggcaa cacgagagaa acgctggcgt aaagtgaact cattacaatg
      901 gctactcact cattccttct cggccaaagc aattgccgta aagcgagtta cagaaaataa
      961 aggcaaaaga acggccggtg ttgatgggaa aatatggtca acacctgaag caaaatcaaa
     1021 agccatcact caacttaaac ggcggggata taaaccctac cctttaaagc gagtgtatat
     1081 cccaaaatca aataacacta aaagaccact tggcatcccg gttatgcgag acagagcgat
     1141 gcaagcttta tacttacttg cactagagcc tgtttcagaa accactgctg attggaattc
     1201 ttatggattt cgcccacggc gttctactca tgacgctatt agccatctct ttgtgatgct
     1261 tgctcgcaaa ggtgccgcac aatgggtact agaaggcgac atcaaagggt gttttgatac
     1321 aatcagccac gagtggattc ttaataacgt gatgttagat aagagaatgc tccagcactg
     1381 gttaaaagcg ggatatattg ataaaggtca cttgtttcct acccaggaag gcacgccaca
     1441 aggaggtatt atctctccaa cgttggcaaa tttggtattg gatggtttag agacgttgct
     1501 tgcaacgaaa tttggatcat taaaacacga tggacacgct agccgtacca gtaaatacca
     1561 agtgcatttc gtgagatatg ctgatgattt tgtcatcaca ggaaaatcaa aaactcttct
     1621 tgaagacgaa gtcaaaccgc taataaagga ttttctagca caacgaggtc taaagctttc
     1681 tgagcaaaag actaaagtga cgcatatcac acacgggttc gattttcttg gtcaaaatat
     1741 acggaaatat agattgggaa aagccaacga aaaactattg ataaaaccat cagcgaacaa
     1801 tgttaaggca cttaagctga aagtgaaaac gatgataaca aaactttgta ctgccaaaca
     1861 agaagaagta ataggcgtac ttaatcctat aatccgaggt tgggcaaatt atcatcatca
     1921 catagtggct aaagaaacat ttacaaaagt agaccacttt atctggcgat cattaaggtg
     1981 ctgggcatgc aggcgacatc ctaacaaaaa cttaagatgg gttaagcaac ggtattacct
     2041 agcaatagaa aaccgtcgca acatgacctt cgcctgtagg agcaatgaaa ctgggaaaaa
     2101 agcaaagctg ttaactcttt gccatgcagc ggatactaaa attattcgcc ataataaaat
     2161 agttggagct gctaatccct accatcccca atatgatgat tactttaaaa aacgttcttg
     2221 cgaaagatac ctgtagtgtt accggctgat cctatgggat tggcttagaa aagaaacaga
     2281 catcttctgt ttccttgatt gaagccgtat gcgatgaaag tcgcacgtac ggtttttatg
     2341 ggggaatgtc acagtaatgt gatgttccta cctactaaaa ttcttttctt cgggacattg
     2401 agtaatttaa tcgaaaacta aggaaaaaaa cttcgtgtgc tataatttta tttaatcaag
     2461 gatggttaat catggatagt atcaactggc acacatttag gtttgaactg gaaatagaaa
     2521 aaaacttaga tcaccgaact ccgtttgaaa aagataaatg taaagttgtt cattcttatt
     2581 cttttcgccg gcttcaaggt aaaattcaaa ttgtgagcgg taaagattct gactttcata
     2641 gaaatagatt aactcattcc atagaagtcg cctcgattgc aaaaagc
//
LOCUS       DACVWI010000290         2687 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.291, whole genome shotgun sequence.
ACCESSION   DACVWI010000290 DACVWI010000000
VERSION     DACVWI010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.291"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..828
                     /locus_tag="JBH85_14525"
     CDS             <1..828
                     /locus_tag="JBH85_14525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947407.1"
                     /translation="YFFGNFDNFDPRDNQISVLDRFILDSVHFYITSSLLMQLHKEYQ
                     ENAMEIDKAWQKEIQAHAHFGPLPTIAIIGNLIKSNKNHVFKDLQFPANKNIQLFQLN
                     KLSIKLNDQVFAFWLPKASEAQVSLSNFTRNTIFVCIATAAILAIGVSVFVFSTSSAA
                     GLAVIFNPASLGIMIALLACATLMLGISSLYSSTTTHDSTIEHPENRTPEKPYHSHNI
                     RKDKIHSSKAKPEEQLPYHDLKWLLFNRKSHTLRESIVTPATASEQLSSMCTNRQKL"
     gene            complement(901..1572)
                     /gene="mutH"
                     /locus_tag="JBH85_14530"
     CDS             complement(901..1572)
                     /gene="mutH"
                     /locus_tag="JBH85_14530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HAU0947408.1"
                     /translation="MLALKNKPPKNEKELLEQCQRIEGLSFAQLALELGLFTPLNPVH
                     RKGWVGQALELALGADAKNESLPDFKQLGIELKTIPINKAGKPAESTFIVSIPLLTIH
                     QQSWESSQCYAKLKKVLWIPIEGDTDIPFPHRRIGCGFLWSPNKDQESVLAEDWNYLT
                     NQIVLGQLETLNSSSGEYLQVRPKAANGKSLCYGYDAEGNRIRTLPRGFYLRSCFTSV
                     ILSQS"
     gene            complement(1538..>2687)
                     /locus_tag="JBH85_14535"
     CDS             complement(1538..>2687)
                     /locus_tag="JBH85_14535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HAU0947409.1"
                     /translation="IIGLIGFVNLAWTMSRYQAYILLVLVGYILARGLIFDALELFSE
                     WMISSLKNGWLWIEVFLKPIDKILRIVLFLTSVLILFQLFGWYSDSLVVTSLEKVVQY
                     SILNITGIHITVASIIEFLILLAVLVWAAKWTREFCFRWLYKNTKDVGIRHSLSVFTQ
                     YAIILLGTFITLHVLGLDFSGMSMILGGLAVGMGFGLRDFASNIVGGIMLLIERPVRE
                     GDLITIGEYEGQVAHIGIRSMRVSSWDNTQVLIPNAETFNKPFTNWTHQDGIIRTVIP
                     IKVSRADDPVMIQQLILDVLAIIPEIVPDPPAQVFLKKIDTALIEFEARYFINIQNHN
                     RVEVRSKVLFAITAQFKAAGIQPPIEPITVELKESSSDFSLKKQTTEE"
BASE COUNT          891 a          553 c          437 g          806 t
ORIGIN      
        1 tattttttcg gtaattttga taattttgat ccacgtgata atcaaattag cgttttagat
       61 cgatttattc ttgatagcgt tcatttttat atcactagca gtttattaat gcagttacac
      121 aaagaatatc aagagaatgc aatggaaatt gataaagcat ggcaaaagga aattcaagcc
      181 catgcccatt tcggtccatt accaacaata gcaatcattg gaaacttgat taaatcaaat
      241 aaaaaccatg tctttaaaga tttacaattc cctgcgaaca aaaacataca gctctttcaa
      301 ttaaataaat tatcaattaa gcttaatgat caagtctttg cgttctggtt acccaaagca
      361 agtgaagcac aagtatcact atccaacttc actcgcaata ccatttttgt ttgtattgcc
      421 actgccgcta ttttagcaat aggcgtaagt gtctttgtat tttctacaag ctcagcagct
      481 ggtttagccg ttatttttaa tcctgcatcg ctaggaataa tgattgcatt gttagcatgt
      541 gccacgctaa tgctgggtat aagctctctt tattcttcca ctactacaca tgacagtaca
      601 atagaacatc cggagaatag aacaccagaa aaaccttatc attctcataa tattcgcaag
      661 gataaaatac attctagtaa ggccaaacca gaagagcagt taccctacca tgatctcaaa
      721 tggttattat ttaacagaaa atcacataca ttaagagaat caatagtgac tccggcaaca
      781 gcatctgaac aattatcgtc catgtgtact aatagacaaa agctataata agctttccct
      841 aatatctgta aaatttatca taataccggt aaacagatgg tgcttaattt atccttaaaa
      901 ttaggattga cttaaaatta cagatgtaaa acaggagcgt aaataaaatc ctcgtggtaa
      961 cgttcttata cgattaccct ctgcgtcata accataacat aaagattttc cattggcagc
     1021 cttaggcctc acttgaagat actctcccga agaggaattt aatgtttcta attgtcccag
     1081 aacgatttga tttgttaaat aattccaatc ttctgcaaga acagattcct gatctttatt
     1141 cggagaccat aaaaatccac atccaattct tctgtgagga aagggaatat ctgtatctcc
     1201 ctctatagga atccataata ccttttttaa tttagcgtaa cattgagaag actcccaact
     1261 ttgctgatgg atggtcagta gtggaataga aacaataaat gtggactcgg ccggtttccc
     1321 tgctttatta ataggtatcg tttttaactc aatgcccaac tgcttgaaat caggtagcga
     1381 ctcatttttt gcatcagcac ctaaagctaa ctcgagagct tgtccgaccc atccttttcg
     1441 atgaacgggg tttaaagggg taaatagacc caattcaaga gctaactgag cgaaactcaa
     1501 cccctcaatt cgctggcatt gctccaaaag ttctttttca ttcttcggtg gtttgttttt
     1561 taaggctaaa atcactggag ctctctttta gttcaacagt aataggctca attggcggct
     1621 gtattcctgc cgctttaaac tgtgcagtta tggcaaacaa gacttttgac cttacttcaa
     1681 cccggttatg attctggatg ttgataaaat accgtgcttc aaattctatt aaagctgtat
     1741 cgattttctt taaaaaaact tgtgcggggg ggtctggaac aatttccgga ataattgcca
     1801 atacatcaag tattaactgt tgaatcatca ctggatcatc ggctctgctt acctttattg
     1861 gtatgaccgt acgaataata ccatcttgat gagtccagtt tgtaaaaggt ttattgaatg
     1921 tttcagcatt cggaatcaaa acctgagtat tatcccatga agatacgcgc atcgagcgaa
     1981 tgcctatgtg agccacttgc ccttcgtatt cacctatggt gatcaaatcg ccttccctta
     2041 cgggtctttc aattaaaagc ataatgcctc caacaatatt tgaagcaaaa tctcttaaac
     2101 cgaaacccat accgacagca agtccaccaa gtatcatcga cataccgcta aaatccagtc
     2161 ccaagacatg aagagtgata aaagtaccca gtaatatgat tgcgtactgt gtaaatacag
     2221 ataaactatg gcgtataccc acatctttgg tattcttata tagccatcga aagcaaaatt
     2281 ctcttgtcca ctttgctgcc catactaaaa cagcaagcag aataagaaat tcaatgatac
     2341 tggcgactgt gatatgtata cctgtaatat taagaatact gtattgaact actttttcga
     2401 ggctagtcac aaccagtgaa tcagagtacc aaccaaacaa ctgaaataaa attaatacac
     2461 ttgttaaaaa caagacaata cgcaagattt tatcgattgg tttgaggaaa acctctatcc
     2521 ataaccaacc atttttcaat gaagagatca tccactcaga gaaaagctct aatgcgtcaa
     2581 atatcaaacc tcttgcgaga atataaccta ctaaaaccaa cagaatataa gcttgataac
     2641 gactcatagt ccatgccaga ttcacaaagc caattaaacc aataatt
//
LOCUS       DACVWI010000291         2678 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.292, whole genome shotgun sequence.
ACCESSION   DACVWI010000291 DACVWI010000000
VERSION     DACVWI010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.292"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..549
                     /locus_tag="JBH85_14540"
     CDS             <1..549
                     /locus_tag="JBH85_14540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HAU0947410.1"
                     /translation="WFALITYFDPNLSHKPCLIASDKIINELWDKSLSGGLSTLPHER
                     ANLSAFFDVKAVKQYEGFVWRSIKFKLVQTVHYYSEYELMPSFGLIFSYNKSRILFTS
                     DTQSCPVQLISFYEESDIIFHDCETTESKSGVHAHYSELVKLPSHLKKKMWLYHYNPG
                     KLPNAKKDGFLGFVAKGQSFVF"
     gene            complement(678..1847)
                     /locus_tag="JBH85_14545"
     CDS             complement(678..1847)
                     /locus_tag="JBH85_14545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HAU0947411.1"
                     /translation="MSLITSYSPMPVTFTHGEGVWLYDEQGKKYLDGLSGIAVCGLGH
                     AHPDVTRTIQEQAARLIHTSNVFHIKEQELLAAKLTSMARMEQVFFANSGAEANEAAI
                     KLTRLFGHKKGIETPSIIVMEKAFHGRTMATLTASGSRKVQAGFEPLVPGFIRAPFND
                     LDAIHTIAANREDVVAVMVEPIQGEGGIYPAEEGYLRALANLCEQNDWMLILDEIQTG
                     NGRTGKLYSCMHYDIQPDILTTAKGLGNGMPIGACLMSKRAKDLFKPGNHGSTFGGNP
                     LACATALTVLEVIERDKLCERVTKNSALLMDKLISNLGEHPHVKAIRGKGYMIGIELD
                     RPANDMRVLGLENQVLFNITAETVVRLLPPLIISEDEIDELVNRITRTINQFTNQ"
     gene            complement(1907..2497)
                     /locus_tag="JBH85_14550"
     CDS             complement(1907..2497)
                     /locus_tag="JBH85_14550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096960.1"
                     /note="SodB; iron binding; present under aerobic and
                     anaerobic conditions; destroys free radicals; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HAU0947412.1"
                     /translation="MEIDMTFTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLN
                     KLIPGTEFESMTLEEIIMKAKGGIFNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAIN
                     KSFGSFAAFKEQFSQTAATTFGSGWAWLVQDQSGALKIINTSNAGTPMTEGLNALLTC
                     DVWEHAYYIDYRNRRPDYIEAFWSLVNWDFASSNLK"
BASE COUNT          772 a          552 c          513 g          841 t
ORIGIN      
        1 tggttcgctc taataaccta ttttgatcct aatctctcgc acaaaccttg tttaatcgct
       61 tctgataaaa ttattaacga attatgggat aaaagtttat ccggcgggtt aagcaccttg
      121 cctcatgaga gagcaaatct tagcgctttt tttgatgtta aggcggtaaa acaatatgaa
      181 ggttttgttt ggcgatcaat aaagtttaaa ttggtacaaa cagtccatta ctatagtgaa
      241 tatgaattga tgccaagttt tggtttgata tttagctata ataaatcacg catccttttt
      301 acatcagaca cacaaagttg tccggtacag ttaatttcct tttatgagga atcagatatt
      361 atttttcatg attgtgaaac tacagaatct aaaagcgggg tacatgcgca ctattcagag
      421 ctcgttaaac ttccctctca tttaaagaaa aaaatgtggc tatatcatta taatccaggg
      481 aaattgccta atgccaaaaa ggatggtttc ttaggttttg ttgccaaggg gcaaagcttt
      541 gtgttttgat gtaactcaca cacatgctcc cggacaatcc agggagcatg ttgtcagata
      601 ccagattaat ttagcatact gcgagacagc cagggagaaa acaatttcta ttcaattgag
      661 agaaagttgt cttctcacta ctgattggtg aactggttaa tagtacgagt tattcgattg
      721 accaattcat caatttcatc ttcactgata ataagtggag gtaataatct tactactgtt
      781 tcagctgtaa tattgaacaa aacttggttt tccaaaccca ggacgcgcat gtcatttgca
      841 ggtctgtcca actctattcc tatcatataa cctttaccac gtatagcttt tacatgggga
      901 tgctctccca ggttgctaat taatttatcc attaacaaag cactgttttt agtgacgcgc
      961 tcacatagct tatctcgttc aatgacctcc agaacagtca aagccgttgc acaagctaaa
     1021 gggttgccac caaaagtcga gccatgattt ccaggtttaa ataaatcttt agctcgcttg
     1081 ctcattaaac aagccccaat tggcataccg tttccaagtc cttttgccgt agtaagaatg
     1141 tcaggttgta tgtcgtaatg catacaagaa taaagcttac ctgttctgcc atttcctgtt
     1201 tgtatttcat ccaaaattaa catccagtca ttctgctcgc aaaggttagc caatgcacgc
     1261 agataacctt cctctgcggg ataaattccc ccctcgccct gaatcggttc taccataact
     1321 gcaaccacat cctctctgtt ggccgcaata gtatgaatgg catcaagatc attgaaggga
     1381 gcacgaataa acccagggac caagggttca aaaccagctt gaactttacg actgcctgat
     1441 gcagttaagg tggccatagt gcgaccatga aatgcttttt ccattacaat aatagaaggc
     1501 gtttcaattc cctttttatg accaaacaga cgagtaagtt taatggctgc ttcattagct
     1561 tctgctccag aattagcaaa aaaaacctgc tccattcgtg ccattgaagt gagtttggcg
     1621 gctaataatt cttgttcttt aatatgaaag acattagaag tatgtattag cctggctgcc
     1681 tgctcctgta tggtacgggt gacatcaggg tgtgcatgac ctaatccaca aactgctatc
     1741 ccgcttaagc catcgaggta ttttttcccc tgctcatcat acaaccacac gccttctccg
     1801 tgcgtgaagg ttacaggcat tgggctgtaa cttgtaatta aactcatgat gtctccataa
     1861 acataaaatt atccggtagg gattgcaaca aatccagctt gttattttat ttcagattac
     1921 tgctcgcaaa atcccaatta actaatgacc aaaaggcttc aatataatcc gggcgcctat
     1981 ttctataatc gatgtaataa gcgtgctccc atacgtcaca agttaataag gcatttaatc
     2041 cttcagtcat tggtgttcca gcattgcttg tgttgataat ttttaaagcc cctgactgat
     2101 cctggactag ccatgcccac ccggaaccga atgttgtagc agctgtttgt gaaaattgtt
     2161 ctttgaatgc tgcaaaagaa ccaaagcttt tattaatggc ttccgccagc ctgccttttg
     2221 gctcacctcc accattaggg ctcatgctgt gccaataaaa ggtgtgattc caaacctgag
     2281 cggcgttgtt aaaaataccg cctttagctt tcatgatgat ctcttccaga gtcatggatt
     2341 caaattctgt tccgggaatt aatttattta agttggtgac gtaagtgtta tggtgtttac
     2401 cataatggta ttccaaggtt tctttggaaa catgaggagc cagtgcatcc aatgcataag
     2461 gtaattgcgg cagggtaaaa gtcatatcaa tctccaggat taaaagtctt tagtttatca
     2521 ggataagtgt gatattcaat gtgccattac tgagcgattc aatattttta tagtcttggc
     2581 catggataca tttctgctgg tataataatc ttttacaaaa tagtggattt taattctcgt
     2641 caaggtgggg atttttggca catttagtac taaattgg
//
LOCUS       DACVWI010000292         2659 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.293, whole genome shotgun sequence.
ACCESSION   DACVWI010000292 DACVWI010000000
VERSION     DACVWI010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.293"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            116..2098
                     /locus_tag="JBH85_14555"
     CDS             116..2098
                     /locus_tag="JBH85_14555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAU0947413.1"
                     /translation="MSNTARINYRKDIDALRGVAVLLVIFDHLHINLVPAGFLGVDVF
                     FVISGFLITQIIFRNTKTQTFSLTKFYLNRMRRILPALMLVLLVSSVMSYFLLLVPDL
                     KNYSTSLLATILSSSNIYFWKFINIGYFSTDATIQQLLHTWSLGVEEQFYLIWPIILI
                     VLTKKFTDKKIILGTILLTIISFFAYFLLRKHPLLAYYSPITRAFELLTGALVALNFD
                     NIPAVSNKYLKNLGSILGLFLIIYPACAFTNNDFPSIKILLPCLGTALLIYTGKNNQG
                     FASKIIENRILVFIGLISYSLYLWHWPLISYLNYLKIPINFTIGFVFILILLLTSTFT
                     YKFVELPFRNKLKLSFLNTMLLFFILPLALAVIFYLFSQYKDNFGFNKISPEKLNQVN
                     TYYGLLKQDYGCIDNKDGFSVLPSEKLCTIGDYHSNKKTVLVVGDSHASAYVGMLHVL
                     LSDQHLQAYVVNQSGTPFILGNISNWRENNPMSRNELLRKLIKNKKYDYVVMGGFWDY
                     YPDLPSLDGKKHPPFEVFKKGLREAVKFIVDNKSIPVIMFDNPPLINLSKTCGLTRVS
                     FLDCSNNLREVKKIQNATRNIILNLKNEFPQLILIDPTKIICDKSKCYTSINGTPLYF
                     DEGANSHLNYDGSTLIGKLYLKKFGNPFQTKNSIYS"
     gene            complement(2224..2472)
                     /gene="csrA"
                     /locus_tag="JBH85_14560"
     CDS             complement(2224..2472)
                     /gene="csrA"
                     /locus_tag="JBH85_14560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HAU0947414.1"
                     /translation="MEAFYGEVGSCYVREILVMLILTRRIGETLIIGDDVNITVLGVK
                     GNQVRLGINAPKDVSVHREEIYLRIQQEKESDDSEQAV"
BASE COUNT          875 a          452 c          391 g          941 t
ORIGIN      
        1 ttttaataac ttcactttat tctataatcg cttttcacac aacatgtaca aaatcaaggt
       61 taatgttcat ttttaaatct aataaagcgt catctgttga tagggtttaa acttaatgtc
      121 aaatactgcc agaataaact atagaaaaga tattgatgca ttaagaggag ttgctgtttt
      181 actagtaatt tttgatcatc tacatatcaa tttggtaccc gctggctttt taggggttga
      241 cgtatttttt gtaatatctg gttttttaat cacacagata atatttagaa acacaaaaac
      301 ccaaacattc tcattaacca aattttacct aaaccgaatg cgaagaattc ttcctgcatt
      361 aatgctagtg cttctagttt cctctgttat gtcctatttt cttttattag tcccagatct
      421 aaaaaattac agtacatcac ttctggcaac cattctctca agctcaaata tctatttttg
      481 gaaattcatt aatattggat atttctcaac agatgctacc attcaacagt tacttcatac
      541 ttggtctctg ggtgtagagg aacaattcta tttgatatgg cccatcatac taattgtact
      601 aactaaaaaa tttactgata aaaaaattat attaggcaca attttgttaa caattatctc
      661 gtttttcgcc tattttttgt taaggaaaca tcctcttttg gcgtattatt caccaattac
      721 tcgagcattc gaattattga caggcgcatt agtggcattg aatttcgata atattcctgc
      781 agtaagcaat aaatatttaa aaaatctggg ttccatttta ggcctttttt tgattatcta
      841 ccctgcttgt gccttcacta ataatgactt tcctagcatt aaaatccttt tgccttgttt
      901 aggtacagct cttttaattt acacgggaaa aaataaccaa ggatttgcaa gcaaaattat
      961 agaaaacagg atattagtct ttattggttt aatttcatac tcgctgtact tgtggcattg
     1021 gcctttaatt tcatatttaa attatttaaa aatcccaatc aatttcacaa ttggatttgt
     1081 ttttatattg attttgctat taacttcaac ctttacttac aaatttgttg agcttccgtt
     1141 tagaaataaa ttaaagcttt cctttctcaa cacaatgcta ctttttttta ttcttcctct
     1201 tgctcttgca gttatttttt acttattttc tcaatacaaa gataattttg gatttaataa
     1261 aatttctccg gaaaaactta atcaggtaaa tacctattat gggttgttaa aacaagatta
     1321 tggttgcatt gataataaag atgggttttc agttttacca tcagaaaaat tatgtactat
     1381 aggagattac cattccaata aaaaaactgt tttggtagtt ggtgacagtc acgcaagcgc
     1441 atatgttggt atgttgcatg tgttgctgtc cgatcaacac ttacaagctt atgtggtcaa
     1501 tcaatcagga acccccttta tattaggaaa catctcgaat tggagagaaa acaatcctat
     1561 gagccggaat gagcttctca gaaagttaat taaaaataaa aaatatgatt atgtcgtaat
     1621 gggcgggttt tgggattatt accctgactt gccatccttg gatggcaaaa aacatcctcc
     1681 ttttgaagta ttcaagaaag gattacgtga agcagtaaaa tttattgttg ataacaaaag
     1741 tatcccagta attatgtttg ataatccacc cttgataaac ctgagtaaaa cttgcggatt
     1801 gacaagggta tcctttctgg actgctccaa taacttacgt gaggtaaaaa aaattcaaaa
     1861 tgctaccaga aatattattt tgaacttaaa gaatgagttc ccacagctta tattaattga
     1921 tccgacaaaa ataatatgcg acaaatcaaa atgctatacc tcaattaacg ggacaccatt
     1981 atatttcgat gaaggtgcaa attctcattt gaactatgat ggttcgacac ttattggaaa
     2041 actatatctc aaaaaatttg gtaatccatt tcaaacaaaa aactcaatat atagttagta
     2101 ttaattttga tttgctgatg agtgtataag aagctttatt aaagaggaaa ttacatttag
     2161 ttacatagtg cgtcccgagt atttttaagt actcggaact ggatgagctg cgtggaaatc
     2221 gatttatact gcttgttccg aatcatcaga ttctttttct tgttgtatgc gtaaataaat
     2281 ttcttcacga tgaacagaaa catcttttgg agcattaatt cctaagcgaa cttgattgcc
     2341 ttttacacct aaaacagtaa tattgacatc atcacctatg attaatgttt cacctatacg
     2401 ccgagtcaaa atcaacatga ctaaaatctc cctaacatag cagctaccta cttctccata
     2461 gaacgcttcc atggtgttct tggcaactac aatatgaaca aaatttaagc aaaatttatt
     2521 gcttggatca cattgtacac tctgattatt aacggaatat taagtcatag ataaatttgc
     2581 gtttaatttt tgcagaaatg agttgaaaaa ttaataaatt ccttgtcata aattcatcat
     2641 aaaactgttc aacattccc
//
LOCUS       DACVWI010000293         2633 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.294, whole genome shotgun sequence.
ACCESSION   DACVWI010000293 DACVWI010000000
VERSION     DACVWI010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.294"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..2054
                     /gene="lem26"
                     /locus_tag="JBH85_14565"
     CDS             <1..2054
                     /gene="lem26"
                     /locus_tag="JBH85_14565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem26"
                     /protein_id="HAU0947415.1"
                     /translation="ILANMQRSQINLSTEQLNQYVNYVDKEAGIKVTIPDAAKKPITL
                     SCQELKGKATKLQHLHEGEIAGLNIYTQQYYEFMNGLLRGQHPYKGNDANFQENMRQV
                     ILHSAAALSGISKGQKHKLPLTFRYDGDTLPKPIIEKRIQCAQSKGIGLEVYEDTAFV
                     SSAFEKPVSTFNGPIRTVFYGMQGLDIGEISRYPAEREFLIAPGKVKYLHHREENKKH
                     YFLACSVTPPASIKQISNLPNGGTYKQAENIAVEAERDMVKKFAQFAIDVTNQYLEGK
                     AEKDKSKWSILANIDNTYGKGSYKIQFAEELKTSLNGLLNNLQNGYIEHKAAHNRIIE
                     ILHQAIEKAQTIDNISLSYAKGQDSSGVLSKTLQYICFQVEDEMKGLETFKSSITEYF
                     AGHQSFFESSRNIGVIDKLHKDYLSKPYDQSEKGKDPNGGDWTLNCGNNKTLHRPNHG
                     LSHTLRGAALVPEVLYSYATHSTDKKTRDMVQNISKDDIKRMQVAMLFSVVGRKSELG
                     FADNPGVYGGYRRASADLFEEYAKTHYKDLFTSKEQIAYWKRLVLDYGNPGFHPDVNK
                     PEQAIIAKIMRQCHCLDLLRCYSKEEFTKKVTKPLQDDLGVDAANNLVNYSKTLLEKT
                     GDRLIGTKSYNLQEHWLNNTDVSHCINTLNSALQHAPHQQYVVKHEEEESLDSDMWVK
                     L"
     gene            2246..>2633
                     /locus_tag="JBH85_14570"
     CDS             2246..>2633
                     /locus_tag="JBH85_14570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR family transcriptional regulator"
                     /protein_id="HAU0947416.1"
                     /translation="MNAQSRMKAYTSFLYNCYNDIFEKTPIDFWGYLYFDFQGRYLQL
                     ISEKSIIDEILNKELFIEQNLCKKNYQHDNFYVCNVDGDHVIAPGIKNCLLDRDFTYF
                     VDIIHQDSNRVEMVTFASSQQPNSTNN"
BASE COUNT          962 a          484 c          464 g          723 t
ORIGIN      
        1 aaatcctggc taacatgcaa cgctctcaaa taaatctgtc tactgaacaa ctaaatcagt
       61 atgttaatta cgttgataaa gaagcaggaa ttaaagttac aattccagat gctgcgaaaa
      121 aaccaataac tttgagttgt caagaattga aaggtaaagc aaccaaatta caacatcttc
      181 atgaaggtga aattgctgga ttaaatatat atacccaaca atattatgaa tttatgaatg
      241 gcttattaag aggccagcat ccatacaaag gaaacgatgc aaactttcag gaaaatatgc
      301 gtcaggtaat actccatagc gcagcagcac tctcaggaat tagtaaaggt caaaagcata
      361 aacttccatt gaccttccga tacgacggag acacccttcc caagcctatt attgaaaaaa
      421 gaattcaatg cgcccagtca aaaggtatag gactagaagt ttatgaagac accgcttttg
      481 tcagtagtgc ttttgaaaaa cctgtatcta cttttaatgg acccattcga accgtatttt
      541 atggtatgca aggattggat ataggagaaa tctctcgtta tcctgctgag cgtgaatttt
      601 taatcgctcc tggtaaagtc aaatacctgc accatcgaga agaaaataaa aaacactatt
      661 tcctggcgtg ttccgtcact cctcctgcaa gcataaaaca aatatcaaat ttgccaaacg
      721 ggggtactta taaacaagcg gaaaacatag cagtcgaagc agagagggat atggtaaaaa
      781 aattcgcaca atttgctatc gatgtaacaa atcaatatct tgaaggtaag gctgaaaaag
      841 acaaaagcaa atggtcaatt ttagcaaata ttgataatac ctatggaaaa ggctcttata
      901 aaattcaatt tgcagaagaa ctaaaaacat cattgaatgg attgctgaat aatttacaaa
      961 atgggtatat tgaacataaa gccgctcaca acagaattat tgaaatactt catcaggcca
     1021 ttgaaaaagc ccaaactata gataatattt ctttatccta cgcaaaaggg caagacagtt
     1081 ctggagtcct ttctaaaacc ttacaataca tctgttttca ggttgaggat gaaatgaagg
     1141 gattagaaac attcaaaagt tcaatcactg aatattttgc cggacatcaa agcttttttg
     1201 aaagctccag gaatattgga gtcattgata agttgcataa agactatcta tcaaaaccat
     1261 acgaccaatc agaaaaaggc aaagacccca atggtggcga ttggacttta aattgtggta
     1321 acaataaaac tcttcataga ccaaatcatg ggctgtctca cactttaaga ggtgctgctc
     1381 tagttccaga ggtactttat tcctacgcga cgcattccac cgataagaag accagagata
     1441 tggttcaaaa cataagcaag gatgacatca aacgaatgca agtcgccatg ttattttctg
     1501 ttgtcggcag aaaaagcgaa ctgggatttg cagataaccc aggagtatat ggaggatata
     1561 gaagagccag cgcagacctt tttgaagagt atgcaaaaac gcattataaa gacttattta
     1621 cctcaaaaga gcaaattgcc tattggaaac gcttggtact tgattatgga aaccctggtt
     1681 ttcatccaga tgtgaacaaa cctgaacaag caatcatagc taaaataatg agacaatgcc
     1741 attgtctgga tttattaaga tgctattcta aagaggaatt cacgaaaaag gtaaccaaac
     1801 cgcttcaaga tgacttggga gttgacgcag ctaataatct tgtcaactac tccaaaaccc
     1861 ttcttgaaaa aacaggagac agattaatcg gtacgaagag ctacaattta caagaacatt
     1921 ggctcaacaa cactgacgta tcacattgca tcaatactct gaactccgct ttacaacacg
     1981 caccacacca acaatatgtt gttaagcatg aggaagagga atccttagat tcagatatgt
     2041 gggttaaact ataaaataac gtcaaataga gagaacctct ggtttcaagt aaaactcggg
     2101 atcagaagtt ctctaacttt ctttgattac tttgtttatg cattgaattg aatctacaaa
     2161 aataaaaaaa atcattacac cactcaacat gattaatttt tgttctataa tttaatcagg
     2221 tagatgttcg gattaaagca acataatgaa tgcccaatcc agaatgaaag cttataccag
     2281 cttcctgtat aattgttaca atgatatttt cgaaaagact cctattgatt tctggggata
     2341 cttatatttt gattttcaag gacgatactt acaactcatt tcagaaaaat ccattattga
     2401 cgaaattctt aataaagaat tattcattga acagaatctt tgcaaaaaaa attatcagca
     2461 tgataatttt tatgtttgca atgtagatgg tgatcatgtc atagcgcctg gtataaagaa
     2521 ctgcttatta gatcgtgact tcacgtattt tgttgatatc attcatcagg actccaatcg
     2581 cgttgaaatg gttaccttcg cctcttcaca acaaccaaac agcacaaata att
//
LOCUS       DACVWI010000294         2563 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.295, whole genome shotgun sequence.
ACCESSION   DACVWI010000294 DACVWI010000000
VERSION     DACVWI010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.295"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            437..>2563
                     /gene="pieC"
                     /locus_tag="JBH85_14575"
     CDS             437..>2563
                     /gene="pieC"
                     /locus_tag="JBH85_14575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieC/LirE"
                     /protein_id="HAU0947417.1"
                     /translation="MLKFYSDSGAKMIKKLLIKVEKLINNLPKEFKLSETVLFSIKED
                     INSLASRFDGSKGYINYYSPKVVQQINDKQKLLEKYKSYLTALLAVLICSKQSKDIRD
                     NKKLQPVYEITDLKNLLERKDVEKIINEITQFDEDQRELQRIERQIQKDEEKEDNQKM
                     HLGKRSKLELRRAELSKRVQLFNNKLKNIPQAEEIKAVLDYCQKYIEKHINLSKQLPK
                     GMLDVKRALSLFDEINSTKTQIRKLSKDKLDSSGQIKLEGLKKELTKAELALQFSYSE
                     EEDKTLKDMLNDLKRLMKMSIRDYQKLATSGGEINVFLHKTTGFYWESLFLYRNVLCE
                     INEYLKKNKKKLSEQGMLVAECISKAFSQMPELDTIEKALEKVKRIDGDLHRQEEYND
                     KINGAWIRFYKKGPVKFVQKVLEQNLDEKIFYIPYNPHNYVLDHPAQSDFADTLGNCY
                     GETQMFLKQINSKSPSINNICPERVLINYQLDQSRTIAKNTKKEKIGIFEADEKTKAQ
                     VTWDGIKDILTSKVTSTAFGDVCMITLTGAQVSGREKLVGHGIGLIKMKNPAPYKYVV
                     YDYAFGGAMGFSSDTQLELFFKQILEGEGSYVPFKECLVEKVGEVSKECQQFINGNPG
                     IASLAQKSLDKTCKRDFWDKDRISFLIRYHPIGTDESRILDLIEKLPLSKDRIELYEQ
                     LVKEPKIGIGNLVKCIIRSGKISYLAN"
BASE COUNT          958 a          378 c          469 g          758 t
ORIGIN      
        1 aaacggatgt gtttgggttt tgcagaaact aaaccaaaat cttactgtgt gcttttaagg
       61 aactccaaaa acctatgaaa caaagagaga gctatgctta gctccagagt caatatctat
      121 tttctaattt acgttgatta tttgggcaaa agataaaatc gaatattttt gctcaagttt
      181 aattcaataa ctaatgtaat taaacaattt acttgcaaaa tgttcatttt ttgatatcat
      241 tactaccgat aatatcttct ctgagtaagt cagaggactg acatcacttg attctacagg
      301 tgtttagttt aatcactatc attaaacggg tatatcgtga ttttctggtt ttttataaac
      361 caaggaaata gacgatcccg taattccttg gttttgaaaa cttcattact acaaatttca
      421 gttaaatgtc actgacttgc tgaaatttta ctcagattca ggtgcaaaaa tgattaaaaa
      481 attgttaatt aaagtcgaaa aattaattaa taatctccca aaagagttta aattatctga
      541 aacagtttta ttctccatta aagaagatat aaacagcttg gcaagtcgtt ttgatgggtc
      601 aaaaggctat attaattatt attctccaaa agtcgtgcaa caaatcaatg acaaacaaaa
      661 gttacttgag aaatacaaaa gttatttaac tgcattactc gctgttttaa tttgttctaa
      721 gcaaagcaaa gacattagag acaataaaaa acttcaacct gtttatgaga ttaccgattt
      781 aaaaaattta ttagaacgca aggatgtcga aaaaattatc aatgaaatta cccaatttga
      841 tgaggatcaa agagaacttc agagaattga acgtcagata caaaaagatg aggagaaaga
      901 ggataatcaa aaaatgcatc ttggtaaaag atccaaatta gagcttagga gggcagagct
      961 ttctaaaaga gttcaattgt ttaataataa gttaaaaaac attccacaag ctgaggaaat
     1021 caaagccgtt ttagattatt gtcaaaaata catcgagaaa catatcaacc ttagcaagca
     1081 attaccaaaa ggaatgcttg atgttaaacg agcattgtct ttatttgacg agataaattc
     1141 caccaagacc caaattagga agttaagcaa agacaaactg gattcttcag ggcaaataaa
     1201 acttgaaggt ttaaaaaagg aacttacaaa ggctgaattg gctttgcaat ttagttattc
     1261 agaggaagaa gataaaactc tcaaagacat gctcaatgat ttgaaaaggc ttatgaaaat
     1321 gagcatcaga gattatcaaa agttagctac atctggcgga gaaataaatg tttttttgca
     1381 taagacaact ggtttttatt gggaaagcct ttttctgtac agaaatgttt tgtgcgaaat
     1441 taatgaatat cttaaaaaaa ataaaaagaa actgtctgag caaggaatgc tggtagctga
     1501 atgcatttct aaagccttca gccagatgcc tgaattggat accattgaaa aagctttaga
     1561 aaaagtcaaa agaatagatg gtgatcttca cagacaagaa gaatataacg acaaaatcaa
     1621 tggtgcttgg attcggtttt ataaaaaggg tccagtaaaa tttgttcaaa aagtccttga
     1681 acaaaactta gatgagaaaa ttttttacat accgtataat ccgcataatt acgtgctgga
     1741 tcatcctgcc caatctgatt tcgccgatac cttaggaaat tgctatggcg aaacacagat
     1801 gtttctcaaa caaataaaca gtaaatctcc ttcaattaac aatatttgtc ctgagagagt
     1861 attaattaat tatcagcttg atcaatccag gacaattgct aaaaatacca aaaaagaaaa
     1921 aatagggata tttgaggcag atgagaagac aaaagcacaa gtaacatggg atggaattaa
     1981 agatatctta acatcaaaag ttacctctac cgcttttggt gatgtgtgca tgatcacttt
     2041 gacgggagct caagtttctg gtcgtgaaaa attagtaggt catggtattg gccttatcaa
     2101 aatgaagaat cctgctcctt ataaatatgt ggtatatgat tatgcttttg gcggtgcaat
     2161 gggattcagc agtgatactc aactggagct attctttaaa caaatccttg aaggagaggg
     2221 atcttatgtt ccttttaagg aatgtctggt tgaaaaagta ggagaggtga gtaaagaatg
     2281 tcaacaattt attaatggta atccgggtat tgcttctctg gcacaaaaaa gtcttgataa
     2341 aacatgtaag agagacttct gggataaaga tcgcatcagt tttttgataa gatatcaccc
     2401 catcggcaca gatgaaagca ggatacttga tttaatagaa aagttacctc tatctaagga
     2461 tagaatagag ctatatgaac agcttgttaa agagcctaaa attggtatcg gtaacctggt
     2521 taagtgtatc attcgctcag gtaagataag ttacctggca aat
//
LOCUS       DACVWI010000295         2543 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.296, whole genome shotgun sequence.
ACCESSION   DACVWI010000295 DACVWI010000000
VERSION     DACVWI010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.296"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            46..1245
                     /locus_tag="JBH85_14580"
     CDS             46..1245
                     /locus_tag="JBH85_14580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAU0947418.1"
                     /translation="MEKFTHNKIANLSAEKNRYHITEGNGFCLRVSPKGTKTWFYRYK
                     FGGKEKWLTIGNFPVMGVAEARKAFNDLWEIRQSDQDPEDIIQKKLLQKNNNVKTLIS
                     DWYNNYIVKHRKQPQQIKQQIDADIIPLLGTLEIEKIQPRDIAKALDNIVQRGSPVHA
                     NKVLSTLKQVFNYAVSRGEITINPAINIRARDIGGVEKPRDRNLDLDEIKKIWLFLDS
                     DNHSMSIQIKNAIKIILLTGARTGELRLAKWSEFNFEKSLWIIPPENNKIGLSMKIHL
                     SELTKKLLLEIKEISLSNFVLAGVDDDSPLGDKSISKAIQRIQKRVGIPQWTAHDLRR
                     TFATQLGETLRIDPVVIEKCLGHKMPKIMATYNKDEMLYQRKEALDKWSSLIEELTIN
                     KFEFVQL"
     gene            1259..1648
                     /locus_tag="JBH85_14585"
     CDS             1259..1648
                     /locus_tag="JBH85_14585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HAU0947419.1"
                     /translation="MNRDIEYIAYQGEKFTIEWYFDEKKHSQSQEYYYSLNKDERIQL
                     LKLLKRMGDAGIIHDKTKFRHEGDKIYAFKPKPDRFLCFFFEDRKIILTNAFRKKQDK
                     LPLTEKEKALKVMDQYTSRVKTGDYYD"
     gene            1641..1937
                     /locus_tag="JBH85_14590"
     CDS             1641..1937
                     /locus_tag="JBH85_14590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family protein"
                     /protein_id="HAU0947420.1"
                     /translation="MTKKHLSTFEREMQDPLFREQFEKEYDEFLLSEIIKALMKNGKM
                     TVRKLAEKAGLSPTVIQKIRSGEQEDVKLSNFLNISHTCGFKVILEKGDDKYYL"
     gene            complement(2000..2197)
                     /locus_tag="JBH85_14595"
     CDS             complement(2000..2197)
                     /locus_tag="JBH85_14595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HAU0947421.1"
                     /translation="MQPVNDLFTQQILFINDVEVIIGKDRLTLRRWWSEGKFPKPVKL
                     HGRTLAWHKDVIDNWINQYVR"
     gene            complement(2221..2466)
                     /locus_tag="JBH85_14600"
     CDS             complement(2221..2466)
                     /locus_tag="JBH85_14600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947422.1"
                     /translation="MFYDQKITIYKGIIQYLLDSTNYSLQRIANLSNSPIAHLQLIYQ
                     HNRLPKESKVELNLLKLFITVIDMEHKGEWKARLQLK"
BASE COUNT          915 a          430 c          464 g          734 t
ORIGIN      
        1 gccagaagtg tagccaattt ctgatatcct aataagagca taattatgga aaagtttact
       61 cataacaaaa ttgcaaattt aagtgccgaa aaaaatcgtt accatattac tgagggtaat
      121 ggcttttgtt taagggtttc tcctaaaggt acgaaaacct ggttctaccg ttataaattt
      181 ggcggtaaag agaaatggct cactattggt aatttcccag taatgggtgt tgctgaagct
      241 agaaaagcct ttaatgattt atgggagata aggcagtctg accaagaccc agaagacatt
      301 atccaaaaaa aattgctcca aaaaaataat aatgtgaaaa cgttaatttc tgattggtac
      361 aacaattata ttgttaaaca ccgtaagcaa cctcaacaga ttaaacaaca aattgatgct
      421 gacattatcc ctctattagg aacattagaa attgaaaaaa tacagcctcg agacatagca
      481 aaggccttgg ataatatagt tcaaagaggc tcccctgttc acgccaataa agtgcttagt
      541 accttgaaac aagtatttaa ttacgcggta agtcgaggag aaattacaat taatccagcc
      601 ataaatattc gagcaagaga cataggtgga gtagaaaaac ctcgtgatcg caatctcgat
      661 cttgatgaaa taaaaaaaat atggctattt ttggatagtg ataatcactc gatgtcaatt
      721 cagattaaaa acgccattaa aatcatatta ttaactggtg caaggactgg tgaactaaga
      781 ctagcaaaat ggtctgaatt taatttcgag aaatctcttt ggattattcc tcccgagaat
      841 aataaaatcg gacttagcat gaagattcat ctgagcgagc ttactaaaaa acttctgttg
      901 gaaataaaag aaatcagctt atctaatttt gttttagctg gggtcgatga tgattcccca
      961 ctaggcgata aatcgatatc taaagctatt caacgcatac aaaaacgagt aggtatccca
     1021 caatggactg cccatgatct cagacgcact tttgccactc agcttggaga aacattgcga
     1081 atcgacccag tagttataga aaaatgtctt ggacataaaa tgcctaagat catggcgact
     1141 tataacaaag acgaaatgct gtaccagcgc aaagaggctt tagataaatg gagtagcctg
     1201 atagaagaac taacaataaa caaatttgaa tttgtgcaac tatagtggta caattataat
     1261 gaatagagat attgaatata ttgcctatca aggcgaaaag tttacgattg aatggtactt
     1321 tgacgaaaag aagcatagcc aatctcaaga atattattat tctttgaata aagacgaacg
     1381 cattcagttg ttgaagctat taaagagaat gggcgatgcc ggtatcattc acgataaaac
     1441 caagtttaga catgaaggag acaaaattta tgccttcaaa cctaagccag atagattttt
     1501 atgtttcttt tttgaagaca gaaaaataat tttaactaat gcctttagga agaagcagga
     1561 taagttacct ttaaccgaaa aggaaaaagc cttaaaggtt atggatcaat ataccagtag
     1621 agtaaaaaca ggtgattatt atgactaaga aacatttatc tacttttgaa cgagaaatgc
     1681 aggaccctct ttttcgtgaa caatttgaaa aagaatatga tgagtttcta ttatctgaaa
     1741 tcatcaaagc actcatgaag aatggcaaaa tgaccgtgag aaaactggcc gaaaaagcag
     1801 ggctttctcc aactgtaatt caaaaaattc gctccggtga gcaagaagat gtaaagctta
     1861 gtaacttcct caacatctct cacacttgcg gttttaaagt cattttagaa aaaggggatg
     1921 ataagtatta cttataaacc tttagaaatt aatcattgtc taaagcagtc attgaccact
     1981 tcaggcaatg aaaatggatt tatctgacat attgattaat ccagttatca atcacgtctt
     2041 tatgccaggc taaagttctg ccatgtaatt ttactggctt gggaaatttc ccttcactcc
     2101 accaacggcg taaagtcaat cggtcctttc caataatgac ttctacgtca ttgataaaca
     2161 gaatctgttg tgtaaataga tcattaactg gttgcatcat tgattctcca aatccctctg
     2221 ttatttaagt tgtaaacgag ccttccattc acccttgtgt tccatatcaa tgactgtgat
     2281 aaacagcttc agcaaattca attcaacctt actttcttta ggtaaacgat tgtgctggta
     2341 gattaactgc aaatgagcaa ttggggagtt tgataaatta gcgattcgtt gtagagaata
     2401 attggttgaa tccagtagat actgaataat acccttatag atggtgattt tttgatcgta
     2461 aaacatgcga tatactcctg taaaacatgt gtaataaagt ccaaatcgcg caaaatgaac
     2521 attaagtatc atttatcgaa act
//
LOCUS       DACVWI010000296         2542 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.297, whole genome shotgun sequence.
ACCESSION   DACVWI010000296 DACVWI010000000
VERSION     DACVWI010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.297"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            62..352
                     /locus_tag="JBH85_14605"
     CDS             62..352
                     /locus_tag="JBH85_14605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947423.1"
                     /translation="MSIISNHDITFSSTQKDLIEKQQKNDIKNQHIADVKANKGGETS
                     EKLIVFGAKTTALAACGIALLFPLTAPMIIPIAQVSGAVALVIITRKFIKSS"
     gene            complement(1131..2540)
                     /locus_tag="JBH85_14610"
     CDS             complement(1131..2540)
                     /locus_tag="JBH85_14610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2546 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947424.1"
                     /translation="METKMSITVKSLDFDQCISNRKYKESLQTNDGRKVWDANSLFNA
                     NKEILGKNNNGDPIHVFIGSNRQNLKADLINLNAGAATLFIPVAQELCDVMGATFHPL
                     LVPDLICENAAIGDTFHSALQVIKGLNDLNSLNSESLAELVKSALSGQLNSLHCISDE
                     SKFLMLYSQIQYIAQQYPDEKINFEFYDDKEDILKPLYEIFSKNPDLIPANVTLNIKR
                     YLNGNLMETDFSPILGLGSQQENYQNIVKWIHKQSSSHLKSGNCCQVLEMDNEKIARY
                     CRFGKDETRLKLLDSLENLAKHQVGQKDQKMDDFIKESYEKMGSSKDMDSITLQQSFE
                     EINSAIKVTEAINKVIANYRKEAKCLFSVGMNAKADRIEKALLNVPVEDRGKIFSNDK
                     ISPELIAIRAALASHRYFGKRGNVYYKDEARTVIDENKAATTYNNLRKQFANLRTRSH
                     ADAQVELEHSSEVSRTLNL"
BASE COUNT          766 a          509 c          399 g          868 t
ORIGIN      
        1 ttgtctattt tttaatcttt atgattaaat ataattaatt ggttcgcttt tggagagtat
       61 catgtccatt atatctaatc atgacatcac ttttagttcc acccaaaagg atttgatcga
      121 aaaacagcaa aaaaatgaca ttaaaaatca acacatcgca gatgtaaaag cgaataaggg
      181 aggagaaaca tcagaaaaat tgattgtttt tggtgccaaa acaacagctc ttgcggcgtg
      241 tggtatcgct ctattatttc cactcacagc accaatgatt attcccatag cacaagtcag
      301 tggtgcagtg gcactagtca tcattactcg caagtttatc aaaagctcct aacagcgcct
      361 ttaggcgcta gaatgcaatg ggaaggcttg tattactttc cattgcaatg agtgctaatt
      421 tcagaaattc catgtatttc tattggagca gctctatcag gaaattcagc cattaatttt
      481 aatgatcctc ccataactga actatattta ctcaaagttg aaattaacct atcagaacat
      541 ttttccaaac gagagattcc atcttatttc atatgtaata tttcaccaag gtcttcttga
      601 gttttttggt gccagacgta aatgacccaa agtcatttct tcagcaatga gttgattagc
      661 ttggttttga gtaatatcca acctatcctt tgcgagatat ttcattgtgc cattaagtgg
      721 tttcgccatg aaacaactta atgttttaaa tttgataaat gttcatcaaa tatcaaatct
      781 ttcgtttaaa ttatatcgtt ataaagctgt gtttccttgc tatctgatta ctctccacaa
      841 acgaacggag tcgcctttcg cacagagcca aatttctctg aaacttttaa atgagctaaa
      901 ccttcgtttt gaaccatttc attttgtatg gactcacagc ttaaacctat ctcactcaaa
      961 taaaaaattg gcaatcgata cataaatctc tcagatctct tctatcaaat attaccttat
     1021 tatcacaaag aacattgctt aaaaatgaca gtttaataag cttttggtag taataaaaca
     1081 agccggaact ggcgaacaaa tccggctgga atagaaattt atagaaccat ttataagttt
     1141 agagttcttg aaacctcaga tgaatgctcc agttcaacct gggcatcagc atggcttcgt
     1201 gtccttaaat tcgcaaattg ctttcttaaa ttattgtaag tcgtcgccgc tttattttca
     1261 tcaatcacag tacgtgcttc atctttataa tagacattcc cccgcttccc aaaatagcgg
     1321 tgtgaagcca aagccgctct tatcgcaatt aattccggag aaattttgtc attagagaaa
     1381 attttacctc gatcttccac aggcacgttg agtaatgcct tttctattct gtccgctttg
     1441 gcattcatgc caacgctaaa taagcatttg gcttccttgc gataatttgc aatgactttg
     1501 ttaatcgctt cggttacttt tattgcacta ttaatttcct caaatgattg ttgcaacgtt
     1561 atagaatcca tatcttttga gctacccatt ttttcataag actccttgat aaagtcgtcc
     1621 attttttgat ctttttgacc cacttgatgt tttgcaagat tctcaagaga gtctaatagt
     1681 tttagccttg tctcatcttt tccaaatcgg cagtatcttg caatcttttc attatccatc
     1741 tctaatactt ggcaacaatt ccctgacttt aggtgactgc ttgattgttt atgaatccac
     1801 tttacaatat tctgataatt ctcttgttga gaccccaggc ccaaaattgg actaaagtca
     1861 gtctccataa gattgccatt caaataacgt ttaatattca aagtcacatt agcaggtatt
     1921 aaatcaggat ttttagagaa gatctcatac agtggcttta atatatcttc cttgtcatcg
     1981 taaaactcaa aattaatctt ttcatcagga tattgttgag ctatatactg tatctgtgaa
     2041 tacagcatta aaaatttact ctcatcgctt atgcaatgga gtgaatttag ttggccactg
     2101 agcgccgatt ttaccagttc tgctagagac tcactgttta atgaattcaa gtcattcaag
     2161 cctttaatca cttgcagggc actgtgaaaa gtatctccaa ttgcggcatt ctcacagatt
     2221 aaatcaggaa caagtaatgg atgaaaagtt gcccccatga catcacacaa ctcttgagct
     2281 actggtataa ataaagtagc tgctcctgca tttaaattga ttaaatccgc tttgaggttt
     2341 tgcctgttag aaccaataaa aacatggatg ggatcgccat tattattttt acccagaatt
     2401 tccttattgg cgttaaataa actgttagca tcccaaactt tcctcccatc atttgtttgt
     2461 aaagactctt tatatttcct gtttgagata cattgatcaa aatccaagga tttaactgtt
     2521 atgctcattt tcgtctccaa gg
//
LOCUS       DACVWI010000297         2541 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.298, whole genome shotgun sequence.
ACCESSION   DACVWI010000297 DACVWI010000000
VERSION     DACVWI010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.298"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..252
                     /locus_tag="JBH85_14615"
     CDS             <1..252
                     /locus_tag="JBH85_14615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947425.1"
                     /translation="TIMITVNTKEKNAIAIGYSVNGNQYGGLGSSYSGHGPKNKEYQF
                     GYKKDSIFGKDISCGSMTLNQDSKVTLVNNNNQCISVLG"
     gene            699..1601
                     /locus_tag="JBH85_14620"
     CDS             699..1601
                     /locus_tag="JBH85_14620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAU0947426.1"
                     /translation="MKKNSLLAISEEGFHHIAYTEWGIFEPELPTVICVHGYTRNSRD
                     FDELANYLSSKGRHVFCPDIAGRGDSSWFKNPRYYNFTQYVKDMTVLMARTNAHQIDW
                     IGTSMGGIIGMILAAMPNSPINKLVLNDIGPQIPIHGLRRIAKYAGKAPDFKSLEEAK
                     QHFKASYADFGITNEKQWDIFTKNSVEQRGPNLYVTKMDPAIKKSKSILQIISEFFRH
                     PHKALEGIFYDINLWSIWKQIKCPVIVIHGVNSDILTSEIITQMKKTHALTEVYEVEN
                     AGHAPALLDLTVHQRIEDWLATHQ"
     gene            complement(1631..2533)
                     /locus_tag="JBH85_14625"
     CDS             complement(1631..2533)
                     /locus_tag="JBH85_14625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAU0947427.1"
                     /translation="MNSQEQRGSFYAILSGFLYGFIGYFGISAIHGDLSASNMLFWRF
                     LISSIFILIVLIPQLKNINDTYKSMFTAFLSGVLYYGLSTLLYFYASLYIGSGLSMVI
                     FFTYPVIIMVFNYFFYSQTIPKIYYLAISVILIGMALLIDVNEIAFDLWGIFLGLASA
                     FFYACYIVSSKNNEISPNVSTLMVCLGCMTTSLIVACLDHTFKVPTSFPVWLNLFGIG
                     LVATVIPILLMLHSLKYISSEKASILSVLEPVFVVIFGVVLLGEELKPWHALGIVLVL
                     AGALITLFSHRINLNQWLGAIYKS"
BASE COUNT          919 a          453 c          459 g          710 t
ORIGIN      
        1 actattatga ttacagttaa taccaaagaa aaaaatgcca ttgctatagg ttactcagtc
       61 aatggaaacc aatatggagg tttgggcagt tcctattctg gacatggacc taaaaataag
      121 gagtatcaat ttggatataa gaaagattcc atttttggaa aagatatctc ttgtggttct
      181 atgaccttaa atcaagacag taaggtgact ttggtaaata ataataacca atgcatcagc
      241 gttttaggtt aattggctat tgcatggaat gtagatatta attttgaaaa gacggtagtg
      301 cctatccaac aatattccac tcaaaataat tgaattcaac tcgtagaaac tcaaatctgt
      361 aattaacagt ttatcccggt taaagcagta caaacctctc tcctaaacca gacatttagc
      421 aaccaaaaat accaaaaaac acaatcaata caatcaattg gataatttta aattcatata
      481 gtatatttaa tatacatgga ccaaacaagg ataggcaatg aaaaaaataa tattggccgt
      541 agttgttatt tctgctgctg tattattgag tggctgtgga agtggatgct gcggtgccag
      601 caattcatgt tgcagctata atactggatg ttgtggtgta caaaattatt ccggtatttg
      661 gtattgattt acaattataa aagccaatag tctgaaatat gaaaaaaaac agcttgcttg
      721 ccatctcgga agaagggttt caccatattg cttatactga atggggtatc tttgaaccag
      781 agttacctac agttatttgt gtgcatgggt atactcgcaa ttccagggat ttcgatgaat
      841 tagccaatta tcttagctcc aagggacgtc atgtattctg cccggatatt gcgggtcgag
      901 gtgatagttc ctggtttaaa aatccccgct attataattt tacccagtat gtaaaagata
      961 tgacagtcct tatggcaaga acaaatgctc atcaaatcga ttggattggg acatcaatgg
     1021 gcggcatcat tggcatgatt ttagccgcaa tgcccaattc cccaattaat aaacttgttc
     1081 tcaatgatat agggcctcaa atacctattc atgggttgag aagaattgct aaatatgcag
     1141 gtaaagcccc tgattttaaa agcctggagg aagccaagca acatttcaaa gccagctatg
     1201 ctgattttgg aattacaaat gagaagcagt gggacatttt cactaaaaac agtgtagaac
     1261 aacgaggccc taatctttat gtcaccaaaa tggatccggc aataaaaaaa tcaaaatcaa
     1321 ttttacaaat catttcagaa ttttttcgtc atccccataa agcactggaa ggaatttttt
     1381 atgacattaa tctgtggtca atttggaagc agattaagtg tccagttata gttattcatg
     1441 gtgtgaattc tgatatcttg acttcggaga taatcacaca aatgaaaaaa actcatgctt
     1501 taactgaagt ttatgaagta gaaaatgcag gacacgcacc agctctattg gatctgactg
     1561 ttcaccaaag aattgaagat tggcttgcca ctcatcaata aatcacaaaa gaaatgccgc
     1621 atctttatta tcaggacttg tatattgcgc ctagccattg atttaaatta attctatgac
     1681 taaacaaggt aatcaaagcg cctgccaaaa ccaagacgat acccaacgca tgccaaggct
     1741 tgagttcctc accgagcagc actacgccaa agatcaccac aaaaacaggt tctaaaacgg
     1801 ataagataga tgccttttcc gaactgatgt acttcaagct gtgcagcatt aacaaaatcg
     1861 gtataaccgt tgcaacaagg cctatgccaa ataaattcag ccaaacaggg aatgatgtag
     1921 ggactttaaa ggtatggtcg aggcaagcta caatcaaact ggttgtcata cagcctaaac
     1981 ataccatcag ggttgagaca tttggagaaa tttcattgtt tttacttgaa actatataac
     2041 acgcataaaa aaaagctgaa gctaagccca gaaatatacc ccataaatca aatgcgattt
     2101 catttacatc aattaacaac gccattccta tcaggataac agatatggcc aaatagtata
     2161 tctttggtat tgtttggcta tagaaaaaat aattgaacac cataataatc actggataag
     2221 taaaaaatat caccatcgat aatccagagc ctatatagag ggaagcataa aagtacagta
     2281 atgtcgataa accataatag aggacaccac ttaaaaaagc ggtaaacatg gatttatagg
     2341 tatcattgat attttttaat tgaggaatca aaacaatcaa aataaaaata ctggaaataa
     2401 gaaatcgcca aaacaacata ttgcttgctg ataaatcacc atggatagca ctaatcccaa
     2461 aataaccaat aaatccgtaa agaaatccgg ataaaatagc ataaaaagat ccacgttgtt
     2521 cttgggagtt catgattgag t
//
LOCUS       DACVWI010000298         2540 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.299, whole genome shotgun sequence.
ACCESSION   DACVWI010000298 DACVWI010000000
VERSION     DACVWI010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.299"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(92..1117)
                     /locus_tag="JBH85_14630"
     CDS             complement(92..1117)
                     /locus_tag="JBH85_14630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HAU0947428.1"
                     /translation="MPWQECTKVDEKIKFVARLLDGEQMSSLCQEFGISRKTGHKIYN
                     RYKESGLEGLNDRSRKPHRYANQLPFQLEKEILKVKKEKPTWGAPKIREKILRQYPDV
                     KSPAISTIHTILDKYGLVTKRKRRRYKAEGTKLTNGKTPNELWCADYKGEFQLGSKEY
                     CYPLTLTDFNSRYLLACEGLSTTKEQYAITVFERVFKEYGLPNAIRTDNGVPFSSVQA
                     LFGLSKLSVWWLRLGISIERIRPGNPQENGRHERMHLTLKKETTKPSGENFLQQQEKF
                     DRFIDEYNNERPHQALDMRYPGEVYIPSNKEYKGLPEVDYPFHDKMITVTHCGRLCGS
                     TPTKGAL"
     gene            1276..>2540
                     /locus_tag="JBH85_14635"
     CDS             1276..>2540
                     /locus_tag="JBH85_14635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010947831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISLpn4 family transposase"
                     /protein_id="HAU0947429.1"
                     /translation="MDLAIEDSAAWSEAIFGSVDLGDKRLTHRLAQIGKQLTSLPGGS
                     LPESCEGQDALIEGSYRFLRNKRVTASQIAEGGYQVTSWLSQRIPTLLAIEDTTTLSY
                     THQIKESLGDLGGPKEKSNRGFHVHTTMLMDAEQEKTIGLIAQERWCRDIKERGKKNH
                     RRVRLYTEKESYKWEKNTRELERRLGSKMSDVISVCDREADIFEYIQYKLDNHQRFIV
                     RASHNRKLEGSYGYLFQMLPSATILGTYTIAIAQKANRKKRQAALELKTASVTFSLPE
                     RRAKARELKPITLNVVIAKEKNPSESDCLEWVLLTTEATTTLECARKITRYYEMRWRI
                     EDFHKAWKSGVGAEEQRMQSIENLEKMIVILSFVAIRLLQLKEYFEYPTTLVINDSST
                     SCDELLTDAKWKVLWNSVERKSLPEKIPTA"
BASE COUNT          784 a          481 c          483 g          792 t
ORIGIN      
        1 aaaaccaggc aaatttagga taacatcatg tctcggcact ttaatctcct ttttgatcgc
       61 gaaatcaaga ggttagttta tactaacttg attaaagtgc cccctttgtt ggggtagagc
      121 cacataacct accacaatga gttactgtta tcattttatc atgaaatgga taatcaacct
      181 caggcagtcc tttgtactcc ttgtttgatg ggatatatac ttcacctgga taacgcatat
      241 ctaaagcttg atgaggacgt tcattattgt actcatcaat aaatcggtca aacttctctt
      301 gctgctgtaa gaagttttct cctgagggtt ttgttgtttc tttctttaaa gttaaatgca
      361 tacgctcatg acgaccattt tcttgcggat tgcctggtct tatgcgctca atgctgatac
      421 ctaatcgcag ccaccatacg gaaagtttac ttagtccaaa taatgcttgt actgaagaga
      481 aaggaacacc attatcggta cggatggcgt taggtagccc atattcttta aaaacacgtt
      541 caaatacagt gatagcatat tgctcttttg tcgttgataa cccttcgcat gcaagtaagt
      601 agcgactgtt aaaatcagtg agtgttaatg ggtagcaata ctctttactc cctaattgaa
      661 attcaccttt ataatctgca caccataatt cgttgggagt ctttccatta gttaacttag
      721 taccttctgc tttgtaacgc cttctcttac gttttgtgac caagccatat ttatcaagaa
      781 tagtatgaat ggtgcttatt gcaggtgatt ttacatctgg atattgtctc aatatctttt
      841 ctcgtatctt gggagctccc caagtaggtt tctctttctt tacctttaat atctcttttt
      901 ctaattgaaa aggtaattgg ttcgcataac gatgaggctt cctgcttcga tcatttaatc
      961 cttccaatcc actttcttta taacgattgt atatcttatg ccccgtcttt cgagaaatac
     1021 cgaattcttg gcataaagat gacatttgtt cgccatctaa caatcttgct acaaatttta
     1081 tcttttcatc cactttagta cactcctgcc atggcatttc tcttctccag aaatgccttt
     1141 gagtgtaacc tatgtctcca gaatattttg ttacctatgt ctcaataagg acatctttcc
     1201 caaatacctg aatcttctac acatcttgtc tatatcaaag aaacatgatc aaatcgcctc
     1261 attttgaggt aatgtatgga tttagcaatt gaggattctg cggcatggtc ggaagctatt
     1321 tttggttcag ttgatttagg tgataaacgc ctgactcatc ggttagcaca gataggtaaa
     1381 caactaacat ccttgcctgg tggttctctt ccagaaagtt gtgaaggaca ggatgcactc
     1441 atagaaggga gttatcggtt tttacgcaat aaacgagtta ctgcgagtca aattgcagag
     1501 ggtggttacc aagtaacaag ctggttatct cagcgaatcc ctactctttt ggcgattgaa
     1561 gacacaacca cactatccta tacccatcaa ataaaagaat cattaggtga tttaggcggt
     1621 cctaaagaaa aaagcaatcg aggatttcat gttcacacca ccatgctcat ggatgcagaa
     1681 caagagaaaa caataggatt aatagcgcaa gaacgttggt gtcgagatat caaagaaaga
     1741 ggcaaaaaaa atcatcgacg agtaaggttg tatacagaga aagaaagtta taaatgggaa
     1801 aagaatactc gagagttaga gcgtcgtctg ggttctaaaa tgtctgatgt gatttctgtt
     1861 tgcgataggg aagccgatat ttttgaatac attcagtata agttagataa tcatcaacgt
     1921 tttattgttc gagcgagcca taatcgaaaa ctggaaggaa gttatggtta tttatttcaa
     1981 atgttacctt ctgcaacaat tttgggtact tatacaattg caatagctca aaaagcaaat
     2041 agaaagaaac gccaagcggc tcttgaatta aaaacagcat ccgttacttt ctcactacca
     2101 gagcgaagag ccaaagcacg ggaattaaag ccaatcactt taaatgtggt tatcgcaaaa
     2161 gagaaaaatc catctgaaag cgattgcctt gaatgggttc tattaacaac agaagcaacc
     2221 acaacattag agtgtgctcg aaaaataaca cgatattatg agatgagatg gcgcattgag
     2281 gattttcata aagcatggaa atcgggggtt ggtgctgaag agcagcgtat gcaatcaatt
     2341 gaaaatttag agaaaatgat tgtcattctc tcatttgtag caattcgatt actccaatta
     2401 aaagagtatt ttgaataccc gactactcta gttatcaatg atagcagtac ttcttgcgat
     2461 gaattgctca ctgatgctaa atggaaagtc ttatggaata gtgttgaaag aaaatcatta
     2521 cctgaaaaaa tacctactgc
//
LOCUS       DACVWI010000299         2529 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.300, whole genome shotgun sequence.
ACCESSION   DACVWI010000299 DACVWI010000000
VERSION     DACVWI010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.300"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            48..686
                     /locus_tag="JBH85_14640"
     CDS             48..686
                     /locus_tag="JBH85_14640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947430.1"
                     /translation="MFGVLVAYTKFFAINPYDKKSMSIYQSVKKEFEKDLNHIESSYS
                     ELLKDKDFNSALQVEMKELEFRLKYVLFNWFFLFKKDKQGLNKEICQFKVDILRLKTK
                     FMISHVLLNPDKYNLEHYKLVVKHLHNQLEDLNDKIGLMKGIEIDIYSDLPSAMYEWF
                     EQTYSLLSNRYDEFKDELSIGDVWEDWSYDNCSSGDDEEYDEPVISFNNTIP"
     gene            complement(864..1280)
                     /locus_tag="JBH85_14645"
     CDS             complement(864..1280)
                     /locus_tag="JBH85_14645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HAU0947431.1"
                     /translation="MDIRYLIYAWGSSILFFIYLYLSYLVIIQRRKYHVLYLTNDDKA
                     FIARFRAHANFAEYVPFTLILMGISIILKIPPLLLTVLMFSLIIARLGHAYGLIKKEA
                     EKQFKPRIYSVATTFIIMGILALFNIFKATILYIAI"
     gene            complement(1379..1924)
                     /locus_tag="JBH85_14650"
     CDS             complement(1379..1924)
                     /locus_tag="JBH85_14650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HAU0947432.1"
                     /translation="MKPKISVFIATSLDGYIARNDGSIDWLIEANSLASPGEDCGYRS
                     FIATIDTIIMGRYSYEKVITFDEWPYASIPVIVLSSKPIQIPEHLRHIISVSNQSPIE
                     LASELAHYGIQHVYLDGGITIQRFLQNNLIDEITITMIPVLIGSGRPLFGFLENDIKL
                     KHLSTTSYPGGFVQIKYHIGE"
     gene            1999..2466
                     /gene="sixA"
                     /locus_tag="JBH85_14655"
     CDS             1999..2466
                     /gene="sixA"
                     /locus_tag="JBH85_14655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HAU0947433.1"
                     /translation="MKIYLVQHGDSLDKDIDPERPLSDQGQKDIQLLSNFLSLLKIEV
                     SCVYHSGKLRAQQTAESLSGHIFSKNGVESRAGLEPLDDVIPLAKEINQLKQNMMFVG
                     HLPFMNKLVSQLVVEEEHRILVSFKPGSLVCLDKADGIDWCIAWMICPELLRE"
BASE COUNT          847 a          391 c          490 g          801 t
ORIGIN      
        1 ccaatctggt gtttgtatta tattatcagg acatttttaa ttctttaatg tttggagttt
       61 tagtggctta cacaaaattt tttgctatca atccgtatga taagaaaagt atgagtattt
      121 accaatcggt taagaaagaa ttcgagaagg atttaaacca tatcgagtcc tcttatagtg
      181 aactactcaa agataaagat ttcaattcgg cgttgcaagt agaaatgaaa gaactggagt
      241 tcaggttaaa gtatgtcctt tttaattggt tcttcttatt caaaaaggat aagcaaggtt
      301 tgaacaaaga aatttgtcag ttcaaagtag atatattgag attaaaaaca aaatttatga
      361 taagccatgt cttgttaaat cctgataaat acaaccttga gcactacaaa ctggtggtta
      421 agcatttaca taatcaactc gaagatctca atgataagat aggtctgatg aaaggtattg
      481 aaattgatat ttatagtgac ttaccctctg cgatgtatga atggtttgag caaacgtatt
      541 ctttattaag taatcgatat gatgagttta aagatgagct ttctataggc gatgtatggg
      601 aagattggag ctatgacaat tgcagtagcg gggatgatga ggagtatgat gagcctgtta
      661 tttcatttaa taatacgatt ccctaatgaa ctaatctgtc atgctccaac ttaatagggg
      721 ttgttttagt aaggcagtgc ttctgaaata agtgtaagcc aatttatact tgttcattac
      781 tttttatgag tatcttcata ggttcgctca taaatcatag aggtcaaatc gtcaaaaaat
      841 ctcaagcaaa ataatctaaa tacttatata gctatataca gtatggttgc tttaaatatg
      901 ttgaagagcg ctaaaatacc catgataatg aaagttgttg caaccgaata aatgcggggt
      961 ttaaattgtt tttctgcttc ctttttgatt agaccatagg catgtcccaa gcgtgctata
     1021 atcagagaaa acattaaaac agttaataat aaagggggaa tcttaagtat aatagatatt
     1081 cccatcagaa ttaaagtaaa tggtacgtat tcagcaaagt tggcatgcgc gcgaaagcgg
     1141 gcaataaatg ctttatcatc attggttaaa tagagcacat gatatttacg acgttgaata
     1201 ataaccaaat aacttaaata aagataaata aagaataaaa tactgctgcc ccaagcatag
     1261 atcaaatagc gaatgtccat ttcgtatcct gttactgata aattggcact atatcatcat
     1321 aacatagcaa ttgcatgctg cattacaatt acagagtaaa caggactaaa gtatctggct
     1381 attcaccaat atggtattta atttggacaa aaccacctgg atagctagtg gttgacaagt
     1441 gtttgagttt aatatcattc tcaagaaaac caaataaagg gcggccagaa ccgatcaaaa
     1501 caggtatcat agtgatggtt atctcatcaa tcagattatt ttgaaggaat ctctggatag
     1561 taatcccgcc atcaaggtat acgtgttgaa tgccataatg agccaattcg ctagctaatt
     1621 ctatagggct ctggttagaa actgaaatga tatgtctcaa atgttctggt atctgtatgg
     1681 gttttgagct cagtactatt accggtatgg aagcatatgg ccattcatca aatgtaataa
     1741 ctttttcata ggaatatcga cccataatta tcgtatctat ggtggcaata aatgatcgat
     1801 atccacaatc ctctccagga gaggcgagag aatttgcttc tataagccaa tcgattgagc
     1861 catcattcct tgcaatataa ccgtcgagac ttgttgcaat aaatactgaa attttaggtt
     1921 tcattacaag cttttcttat ctgttatttc aaatgagtct acactttaat aaattagcta
     1981 atgaattaaa agggtgagat gaaaatttat cttgttcaac atggtgacag tttggataaa
     2041 gatattgatc ctgaaagacc tttgagtgat cagggtcaga aagatattca attgttaagt
     2101 aacttccttt ccctgcttaa aatcgaagtg tcctgtgtat accacagtgg aaaattaaga
     2161 gcacaacaaa cagcagagag tttgtctggt catattttca gcaaaaatgg cgttgagtcc
     2221 agggcagggc ttgagccgct tgatgatgtc ataccattgg caaaagagat taatcaatta
     2281 aaacaaaaca tgatgtttgt agggcatttg ccatttatga ataaactggt cagccaactt
     2341 gttgtggaag aggaacatcg cattttggtt tcatttaaac ctggcagtct tgtttgcctc
     2401 gataaagcag acgggattga ttggtgtatt gcctggatga tttgtcctga gttattaaga
     2461 gaatgaagaa tactgttctc atcttcatag ctcgctgcct atgttttatc catgatttac
     2521 atcagagac
//
LOCUS       DACVWI010000300         2489 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.301, whole genome shotgun sequence.
ACCESSION   DACVWI010000300 DACVWI010000000
VERSION     DACVWI010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.301"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..382
                     /locus_tag="JBH85_14660"
     CDS             <1..382
                     /locus_tag="JBH85_14660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HAU0947434.1"
                     /translation="YGFGKEVMYSFDDAIKKVTEELQKEGFGVLTNIDVSATLKKKLN
                     QDMPPYQILGACNPQFAHHALEKEPSIGLLLPCNVVVRQDDTGKVYIEFMDPKSVLEL
                     VGNPEINLVAGEVRQRLERVLNAL"
     gene            complement(397..2304)
                     /locus_tag="JBH85_14665"
     CDS             complement(397..2304)
                     /locus_tag="JBH85_14665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HAU0947435.1"
                     /translation="MGCSTCTSHKEPMPKLWHNPKVITATIAGLLLTIGFVGSYLTLP
                     RIIANGFYVSAILIGGYYFAHEAIDKFIKEYEIGIEFLMSIAAIVAGLMGQWAEAATL
                     VFLYSISEAAEGYSGERARHAIRALMDLAPKAALVRRNNSEFRIPLEEIQVGDEFIVL
                     PGESIATDGEVISGHSSVNQAPITGESIPVEKIIGSNVFSATINGEGTLTVRATKQFA
                     DNTLSRIIFLVEKAQDKKGRSQRFIERFGDLYSPFVLLVGILIATVPPLLGLSWQEWV
                     IRATVFIVAAAPCALVISIPITLVAALGTASRNGILLKGGLYLEQLVKIKVIALDKTG
                     TLTQGKPKVTDIIPLNNHTRNQILNAAATIESRSQHPLAQAILQQATEENIQYNPVEQ
                     FKSLTGSGVLGFINGEKFYIGNPKLFIDMGLLIEALTQEINKLQAAGKTVVLLGTDKE
                     ILGLIAIADPLRPTARQMVSSLKLLGIERVVMLTGDNSITASSIGIQAGVDEVLSDLS
                     PEDKTRKIEELERRYGKVMMVGDGVNDAPALAAAHVGVAMGAAGSDVALETADVALMS
                     DNLLKLPYLIEFSRRTWNIILQNLGLSIIVISSLVVGAVTGYFTLPIAVLAHEISELI
                     VIASGLRMLRS"
BASE COUNT          781 a          493 c          447 g          768 t
ORIGIN      
        1 atatggattt ggaaaagaag taatgtattc atttgatgat gcaattaaaa aagttactga
       61 agaactgcaa aaagagggat ttggggttct tacaaatata gatgtgtcag caactttgaa
      121 aaaaaaatta aatcaggata tgcctcccta tcaaattctt ggtgcatgca acccacaatt
      181 tgcccaccat gctttagaaa aagagccatc tataggtttg cttctaccat gtaatgtggt
      241 tgtacgccag gatgatacag gcaaagtgta tattgaattt atggatccaa aatcagtatt
      301 agaattggtc ggcaatcctg agatcaatct ggtcgctggt gaagtaagac aaagactgga
      361 gagagtatta aacgcattgt aatggctcat ccatagttaa gatcttaaca tgcgaagacc
      421 acttgcaata acaataagtt cactgatttc atgagctaaa actgctattg gcaacgtaaa
      481 atagccggtt accgccccga caacaagaga gctaattaca attatagaaa gtcctaaatt
      541 ttgtaaaatt atattccagg ttcgacgact aaattcgatg agataaggta attttaataa
      601 attatcactc attaatgcta catccgcagt ttctaatgcg acatcactac cagcagcacc
      661 catagcaact cctacatggg ctgctgcaag tgctggagca tcatttactc catcgccaac
      721 catcattacc ttaccgtaac gtctttccag ttcttcaatt ttccgtgtct tatcttctgg
      781 tgataaatca gagagtacct catctacacc tgcttgaatg ccaattgacg aggcagttat
      841 cgagttatct ccagtgagca taaccacacg ttcaataccc aacaatttta aggaagatac
      901 catctgcctt gctgttggtc ttaacggatc agcaattgca attaaaccga gaatttcctt
      961 atcagttcct aataatacga ctgtctttcc agcagcctgt aatttgttta tttcttgggt
     1021 taaggcttct attaatagac ccatatcaat aaataatttt ggattgccga tatagaattt
     1081 ttccccatta ataaaaccaa gtacacccga accagttaat gacttaaatt gttcaacagg
     1141 attatattga atattttctt cagtggcttg ttgcaaaatg gcttgggcca aaggatgctg
     1201 agagcgcgat tcaatagttg cggctgcatt taatatttga ttccgagtat gattattcaa
     1261 tggaatgata tcggtgacct tcggtttacc ttgtgttaat gttcctgttt tatccagcgc
     1321 aattaccttt atcttcacta gttgctctaa atataatcca ccttttagta atatgccatt
     1381 tcgacttgct gtaccaagag cagctacaag agtaattggt atggaaatca ctaaggcaca
     1441 gggtgctgca gcaacaataa acactgttgc acgtatcacc cattcttgcc aagacaaccc
     1501 caataggggt ggcacagtgg ctataagtat tcctactaaa agaacaaatg gactgtagag
     1561 gtcgccaaaa cgctctataa atcgttgact gcgacccttt ttgtcttgtg ctttttcgac
     1621 aagaaatatg atacgagata atgtattatc agcaaattgt ttagttgcgc gaacagtaag
     1681 agttccctca ccgtttatag ttgcagaaaa aacgttactt cctataattt tctcgactgg
     1741 aattgattcc cctgtaatgg gtgcttgatt aacactggag tgtcctgaaa tgacttctcc
     1801 atctgtagca atgctttcac ctggaagaac aatgaactca tctccaactt gaatttcttc
     1861 taagggtatt cgaaattcac tattatttcg ccggactaac gctgcttttg gagcaagatc
     1921 cattaatgct cggatagcat gtcgcgctcg ttcaccggaa taaccttctg cagcttcaga
     1981 aatagaatac aaaaagacta atgttgctgc ttccgcccat tgccccatta aaccagcaac
     2041 aatggcagca atggacatca agaattcaat accgatttca tattctttga taaatttgtc
     2101 tattgcttcg tgtgcgaagt aatatccacc aattaatatt gcacttacgt aaaacccgtt
     2161 agcgataatc cttggtaatg tcaaatatga gcctacaaaa ccaattgtta ataataagcc
     2221 ggctattgtt gccgtaatga ctttaggatt atgccatagc ttgggcattg gctctttatg
     2281 agaagtacat gtggagcaac ccatttattt acacccctta ttcatagttt tctttagagc
     2341 agtaatacta aagagccatt gttacctaaa aataagggtt tttaaagaat tcgctttaga
     2401 tattgaataa aactataaaa ctattttgtt ctactataga taatttgaaa acttaattac
     2461 taatgatgaa aaaattggtt atctatctg
//
LOCUS       DACVWI010000301         2466 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.302, whole genome shotgun sequence.
ACCESSION   DACVWI010000301 DACVWI010000000
VERSION     DACVWI010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.302"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            272..1817
                     /locus_tag="JBH85_14670"
     rRNA            272..1817
                     /locus_tag="JBH85_14670"
                     /product="16S ribosomal RNA"
     gene            1889..1964
                     /locus_tag="JBH85_14675"
     tRNA            1889..1964
                     /locus_tag="JBH85_14675"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1922..1924,aa:Ala,seq:tgc)
     gene            2113..>2466
                     /locus_tag="JBH85_14680"
     rRNA            2113..>2466
                     /locus_tag="JBH85_14680"
                     /product="23S ribosomal RNA"
BASE COUNT          693 a          479 c          753 g          541 t
ORIGIN      
        1 caaatactat cttcaatatc cattaagtag caattaagta aaacaaaagc atttttccat
       61 cttagttctg tacaaacaaa gtgaggcttt ctgctttttg ataaaaaaat taaaaaagta
      121 tttgacagag ttgttgaaat gagtagaata cgccctacgc cacgagggcg ggttcattaa
      181 gaagagagaa gacaaactgt gtgggcactt tggaagactt tgagtgctta agagataaag
      241 aagatagcta gcgagagcta gtgccggaat tgaactgaag agtttgatcc tggctcagat
      301 tgaacgctgg cggcatgctt aacacatgca agtcgaacgg cagcattgtc tagcttgcta
      361 gacagatggc gagtggcgaa cgggtgagta acgcgtagga atatgccttg aagaggggga
      421 caacttgggg aaactcaagc taataccgca taatgtctga ggacgaaagc tggggacctt
      481 cgggcctggc gctttaagat tagcctgcgt ccgattagct agttggtggg gtaagggcct
      541 accaaggcga cgatcggtag ctggtctgag aggatgacca gccacactgg aactgagaca
      601 cggtccagac tcctacggga ggcagcagtg gggaatattg gacaatgggg gcaaccctga
      661 tccagcaatg ccgcgtgtgt gaagaaggcc tgagggttgt aaagcacttt cagtggggag
      721 gagggttgat aggttaagag ctgattaact ggacgttacc cacagaagaa gcaccggcta
      781 actccgtgcc agcagccgcg gtaatacgga gggtgcgagc gttaatcgga attactgggc
      841 gtaaagggtg cgtaggtggt tgattaagtt atctgtgaaa ttcctgggct taacctggga
      901 cggtcagata atactggttg actcgagtat gggagagggt agtggaattt ccggtgtagc
      961 ggtgaaatgc gtagagatcg gaaggaacac cagtggcgaa ggcggctacc tggcctaata
     1021 ctgacactga ggcacgaaag cgtggggagc aaacaggatt agataccctg gtagtccacg
     1081 ctgtaaacga tgtcaactag ctgttggtta tatgaaaata attagtggcg cagcaaacgc
     1141 gataagttga ccgcctgggg agtacggtcg caagattaaa actcaaagga attgacgggg
     1201 gcccgcacaa gcggtggagc atgtggttta attcgatgca acgcgaagaa ccttacctac
     1261 ccttgacata cagtgaattt tgcagagatg cattagtgcc ttcgggaaca ctgatacagg
     1321 tgctgcatgg ctgtcgtcag ctcgtgtcgt gagatgttgg gttaagtccc gtaacgagcg
     1381 caacccttat ccttagttgc cagcatgtga tggtggggac tctaaggaga ctgccggtga
     1441 caaaccggag gaaggcgggg atgacgtcaa gtcatcatgg cccttacggg tagggctaca
     1501 cacgtgctac aatggccgat acagagggcg gcgaaggggc gacctggagc aaatccttaa
     1561 aagtcggtcg tagtccggat tggagtctgc aactcgactc catgaagtcg gaatcgctag
     1621 taatcgcgaa tcagcatgtc gcggtgaata cgttcccggg ccttgtacac accgcccgtc
     1681 acaccatggg agtgggttgc accagaagta gatagtctaa ccttcggggg gacgtttacc
     1741 acggtgtggt tcatgactgg ggtgaagtcg taacaaggta gccgtagggg aacctgcggc
     1801 tggatcacct ccttacatag aaaggcacag aaggaatcaa agtgcccaca cagtttgttt
     1861 tcattattta agaacgcggt ccaagattgg ggtcgtagct cagctgggag agcacctgcc
     1921 ttgcacgcag ggggtcagga gttcgatcct cctcggctcc accaatagat tgaggggatt
     1981 gaccagaaca aagtgttttt tgtggagagc attttattct ggtatagccg gagttcatta
     2041 acaagatggt aaagaagaag aggtaacaca agcgattggt atatgcatca tgtgattttg
     2101 aggtgattga gattatatgg tcaagaagag aagcgcaaac ggtggatgcc ttggcagtaa
     2161 gaggcgaaga aggacgtgga atcctgcgaa aagctatggg gagctggaaa cgagcgatga
     2221 gccatagatg tccgaatggg ggaacccggc tgcagcgatg cggtcatttg catttgaata
     2281 cataggatgc aaaggcgaac tcggggaact gaaacatcta agtacccgaa ggaaaagaaa
     2341 tcaagagaga ttctccaagt agcggcgagc gaacggggag gagcctggcg tgatttatta
     2401 ttgaactgag tagaacaatt tgggaaagtt ggcgatagag ggtgaaagcc ccgtatacga
     2461 aggttt
//
LOCUS       DACVWI010000302         2451 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.303, whole genome shotgun sequence.
ACCESSION   DACVWI010000302 DACVWI010000000
VERSION     DACVWI010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.303"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            21..1484
                     /locus_tag="JBH85_14685"
     CDS             21..1484
                     /locus_tag="JBH85_14685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAU0947436.1"
                     /translation="MKTNIPTLSKPIKDSGYRRGLKDRHVQLIALGGIIGSGYFLGTG
                     EVINLVGPSVFIAYLLGGLIIYLTMLCMGELAVAIPISGSFVTYTSDFISPTVACGVG
                     WSYWITWVAYIPAECVAGGIIMELFTGVSGYIWVVCFGLIITYINLAKVDTFGEIEFW
                     LALIKIISLLAFVFLAILIFFGLIHGSEPPGIIGFKYLLGDGGLLPNGAMSLLTAMVL
                     LLVNYQGSEIIGLAAGESENPARMIPHAIRNVTFRILFLYIIPVFCLVLIFPWQKAGL
                     SNSVFADALNFYGLKWAGAVTSFVTLSATLSCANSGFYGAVRSLNALARDGMAPHVLA
                     KFNQNSVPQNAVIATLIGVWILLGVGYFFGQTKLYIALLLVSGFTGTLAWLSLCIAQI
                     SFRNRLYKAGYSIKDLRYVTPYSPYTGILAVILMVGSLFFLLLNKDPIYKLSFIIGVV
                     SFIIPVIIYKVFDLSKVRKKALHVKSRVKFQDLFPPQ"
     gene            complement(1586..2326)
                     /gene="ravK"
                     /locus_tag="JBH85_14690"
     CDS             complement(1586..2326)
                     /gene="ravK"
                     /locus_tag="JBH85_14690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavK"
                     /protein_id="HAU0947437.1"
                     /translation="MVSLEHIQKLISECRKLGKDGLDNGTNGLIPELEIDVVPPSAFL
                     GVGNNPAIFVNSKTYKLMRTTHEKWVENKTIVFKSYLLSQPAIKIIGAIVHETGHAFN
                     VAAKIPNTEANACIFEIEVLMRLFQVKSPLLLGCTELDMQSYFKSRLTDYNKCVKDCQ
                     CLAEMVEFITHQFKLDEVSISEKENQIPLLSISNKWPGLFAKKQIAPDMDKLLTSPVT
                     ITPEVKILFYQLVKEHFHSPETEIKLDI"
BASE COUNT          673 a          480 c          458 g          840 t
ORIGIN      
        1 atagtgagaa aaaacagccc gtgaagacta atattccaac cctatcaaaa cccattaaag
       61 acagtggtta cagacgaggt ttaaaagatc gtcatgtcca actgattgca ctaggtggaa
      121 ttatcggctc tggatatttt ttaggaaccg gtgaagtaat taatcttgtt ggcccctctg
      181 tgtttattgc ctatttactt ggtgggttaa ttatttacct aaccatgtta tgtatgggtg
      241 aattagcagt cgccattcca atttccggct cttttgttac ttacacttct gattttatat
      301 ccccaactgt cgcttgcggt gtcgggtggt catattggat tacctgggtc gcctatatcc
      361 ccgcagaatg tgttgcggga gggatcataa tggaattgtt tactggggtg agcggttaca
      421 tatgggtggt ttgcttcgga ttaattatta cctatattaa ccttgctaaa gtcgatacgt
      481 ttggtgaaat tgaattctgg ctcgccttaa ttaaaattat ctcattactc gcctttgttt
      541 tcctggcaat actaattttc tttggactca ttcatggatc agaaccaccc ggtataatag
      601 gatttaagta cctgttaggc gatggaggtc tgttacctaa tggggcaatg tcgttgttga
      661 cagccatggt tcttttgctg gttaattatc aaggatctga aatcatagga cttgcagcgg
      721 gagaatctga aaaccctgcc cgaatgatcc ctcacgccat ccgtaatgtt actttcagaa
      781 tcctgtttct ctacatcatt ccagtatttt gcctggtttt aatttttccc tggcaaaagg
      841 ctgggttatc taactcagtc ttcgctgatg cgcttaattt ctacggcctg aaatgggcag
      901 gagcagtaac gagttttgtc actctgtctg caaccttatc ctgcgctaat tccggatttt
      961 atggtgctgt gcgttcttta aatgctttgg cacgtgatgg tatggctcca catgttttag
     1021 ccaaatttaa tcaaaactct gttcctcaga acgccgttat tgccacactg attggagttt
     1081 ggattctttt gggtgtgggt tacttttttg gtcaaacgaa actctatatc gctttattat
     1141 tagtatccgg ttttactgga acgctggctt ggctttcttt atgcattgct caaatcagct
     1201 ttagaaaccg tttgtataaa gccggttact ccattaaaga tctccgttat gtaacacctt
     1261 attcacccta taccggaatt cttgctgtca ttttgatggt tggctcctta tttttcttac
     1321 tgctaaataa agatcccatc tataaattat catttattat tggtgtggtg agtttcatta
     1381 tacccgtcat tatctataag gtctttgatt tatccaaggt taggaaaaaa gctttgcatg
     1441 tgaaaagtcg ggtgaaattt caggatttat ttccgccaca gtaacttaaa cattgctttt
     1501 tgaagtgttt tctggcgtgc agaattcatt ttgcatgcca gactcataaa gtcacagcaa
     1561 ttacctgcat caatcaaaaa tattgttata tatcaagctt tatctctgtt tcaggagaat
     1621 gaaaatgctc tttaaccaat tgataaaaca ggattttaac ctctggagtg atagttacag
     1681 gagaagtcaa taatttatcc atgtcagggg caatctgttt ctttgcaaat aagcctggcc
     1741 atttgtttga aatagacaga agcgggattt ggttttcttt ctctgaaatt gatacctcat
     1801 ccagcttaaa ttgatgagtt ataaattcga ccatttcagc taaacattgg cagtctttca
     1861 cacatttgtt gtaatcagtt aaccgtgatt taaaataaga ttgcatatcc agttccgtac
     1921 accctagcag caaggggctt ttaacttgaa acaacctcat taacacttca atttcaaaaa
     1981 tacaggcatt tgcttcagta ttgggaattt tggcagccac attaaaagca tgaccagttt
     2041 catgaacaat agcaccaata attttgatcg ccggctggga aagcaaataa cttttaaaaa
     2101 ctattgtttt gttttcaacc catttttcat gggttgtacg cattaacttg tatgttttag
     2161 aatttacaaa aattgccgga ttattaccta cccctaaaaa cgcactggga gggacaacat
     2221 cgatttccaa ttcagggatt aacccattag taccattatc aagtccatct ttacccaact
     2281 tcctacattc cgaaataagt ttttgtatat gctccaaact taccataata cccctcctta
     2341 ttgtaagaaa tccctgcgat cataaagaaa tcaaagatag caaactgatc aaaatatgct
     2401 tcacatcaga ccattatttg gtattgaaat tattcagtca agatttttta t
//
LOCUS       DACVWI010000303         2446 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.304, whole genome shotgun sequence.
ACCESSION   DACVWI010000303 DACVWI010000000
VERSION     DACVWI010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.304"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1425
                     /locus_tag="JBH85_14695"
     CDS             <1..1425
                     /locus_tag="JBH85_14695"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-methylcitrate
                     dehydratase/aconitate hydratase"
                     /protein_id="HAU0947438.1"
                     /translation="VKPDYDQVITDIADFVLNKEIDSVQAYETARLCLMDTLGCGILA
                     LNFQECTKLMGPIVPGATLPGGARVPGTNYELDPVQAAFNIGTMIRWLDFNDTWLAAE
                     WGHPSDNLGAILAVADYLCRENCNHGRPPILMHDVLTAMIKAHEIQGCLALENSFNRV
                     GLDHVILVKVASAAVAAHLFGADRDMMLRTLSQVFVDGQSLRTYRHAPNAGSRKSWAA
                     GDATSRAVRLALIAKAGEMGYPSALTAQTWGFYDVLFGKKQFKFQRPYGSYVMENVLF
                     KLSYPAEFHAQTAVECAVKLHPIVKNRLEDIARIELITHESAIRIISKQGALYNPADR
                     DHCLQYMVAVGLLFGDLKAEHYEDDVAADPRIDALRAKMHVTENERFSRDYHDPEKRS
                     IANSMRIIFKDSSESELITIEYPIGHKRRREEGIPVLMSKFKRNLSTRFSTDMVEKII
                     YAMSDTNTLSSMKVSDFMAMWIVN"
     gene            complement(1550..2365)
                     /locus_tag="JBH85_14700"
     CDS             complement(1550..2365)
                     /locus_tag="JBH85_14700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HAU0947439.1"
                     /translation="MKRYVFMLSDGTGITAETLGNSLITQFENIQFEKITIPYIDSTH
                     RAESVVLRINQCFSEQGTKPLVFMTLVDPEIRQAIKKAHACVFDLFSIFIGPLENELE
                     EKSSYTVGRTHGVANVKSYSHRIEAIDFALSHDDGIKTRGYDKADIILIGVSRCGKTP
                     SCLYMALQYGILAANYPFTEEDLVGFRLPEVLRPYKQKLFGLTIDAQRLQQIRSERRP
                     NSKYASAEQCRLEVTEVEAMYQRENIPYINSTKYSIEEISTKVLAIAGLQRKI"
BASE COUNT          749 a          450 c          499 g          748 t
ORIGIN      
        1 gttaagccag actatgatca ggttataaca gatatagctg attttgtatt aaataaagaa
       61 attgatagtg tgcaggccta tgagactgcg cggttatgct taatggatac actcggttgt
      121 ggcatattgg cccttaactt tcaggaatgt accaaattaa tgggacctat agtaccggga
      181 gcaactcttc ctggaggcgc gagagtacca ggtactaatt atgaactgga tccggttcaa
      241 gctgctttta atatcggcac gatgatacga tggctagact ttaatgatac ttggctcgct
      301 gcagaatggg ggcacccttc tgataatttg ggtgctattt tggctgttgc cgattatttg
      361 tgccgggaaa attgtaatca tggacgtccg cccatcttga tgcatgatgt acttacggca
      421 atgattaaag cacatgaaat tcaaggttgt ttggccctgg aaaatagctt caatcgcgtc
      481 ggtcttgatc atgtcatatt agttaaagta gcgagtgccg ctgttgctgc tcacttgttt
      541 ggagcagatc gtgatatgat gctaagaact ctctcgcagg tttttgtgga tggacaaagc
      601 ttgagaacat atagacatgc tcccaatgca ggttcaagga aatcatgggc agcaggagat
      661 gctacctccc gtgcggttcg tttggcttta attgccaagg caggggaaat gggatatcca
      721 agcgccttga ccgcacaaac atggggattt tatgacgtgc tatttggtaa aaaacaattc
      781 aagtttcaac gcccttacgg cagctatgtg atggaaaatg tgttattcaa gttatcttat
      841 cctgctgaat ttcatgcaca aaccgctgtc gaatgtgccg taaaattaca tcctatagta
      901 aaaaatagat tagaggatat tgctagaatt gaattaatca cacatgagtc agcaataaga
      961 ataataagta agcaaggtgc tttatataat cctgccgaca gagatcactg cttgcaatat
     1021 atggttgcag taggacttct ctttggtgat ttaaaggcag agcattatga agacgacgtt
     1081 gccgcagatc ccagaataga tgctttacga gctaaaatgc atgtaactga aaatgaacgg
     1141 ttttcacgcg attatcatga tccggaaaaa cgctctatag ctaacagcat gagaatcatc
     1201 tttaaagata gctcagaaag tgaattaata actatagaat accctattgg ccataaacgg
     1261 agacgagaag aggggattcc cgttttaatg tctaaattca agcgtaatct gagtacaaga
     1321 ttctcaactg acatggttga aaagattatt tatgccatga gcgacaccaa cacgctatca
     1381 tctatgaaag taagtgattt tatggccatg tggatagtaa attaaaaaga ctaactaata
     1441 cccacgctca atctgttatc tgtactgact tttagcaaag accaggaggg ggctaagcgt
     1501 atagcaaagc caaccctcct tactaaatcg tggccttcaa aaataggttt tatattttcc
     1561 tttgtaaacc ggcaatagca agaacctttg tcgatatttc ttctatggaa tattttgttg
     1621 aattgatata aggaatattt tctcgttggt acatggcttc tacttctgtt acctctaatc
     1681 tgcactgctc tgcagaggca tatttgctat ttggtctacg ttcagagcga atttgctgca
     1741 aacgttgtgc gtcaattgtt agtccaaata atttttgttt ataaggtctt aatacctctg
     1801 gtaagcgaaa acccaccaaa tcttcttctg taaaaggata attggcagct aaaatgccat
     1861 attgcagtgc catatataag caactgggag ttttgccaca acgtgaaact cctataagaa
     1921 taatatctgc tttatcgtaa ccacgcgttt ttattccatc gtcatgtgaa agggcaaaat
     1981 cgattgcttc aattcgatgg gaataggatt tcacattcgc aaccccatga gtcctgccta
     2041 ctgtataaga tgatttctct tcaagctcat tttccaatgg tccaataaaa atactaaaca
     2101 aatcaaaaac acaggcatgc gcctttttaa tggcttgtct aatttctgga tcaactaaag
     2161 tcatgaatac taagggcttg gttccttgct ctgaaaaaca ttgattaatt cttagtacaa
     2221 cactttctgc tctgtgagtt gaatctatgt agggtattgt tattttttca aattgaatat
     2281 tctcaaattg agtaatcaga ctattaccta atgtctcagc cgtaattcct gtaccatcgg
     2341 aaagcataaa aacataacgt ttcataagtg gcctttttaa ttcattgatt aataaataaa
     2401 taatatttaa attataaatg ggaatagcaa ttgtacttat taatag
//
LOCUS       DACVWI010000304         2433 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.305, whole genome shotgun sequence.
ACCESSION   DACVWI010000304 DACVWI010000000
VERSION     DACVWI010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.305"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            33..524
                     /locus_tag="JBH85_14705"
     CDS             33..524
                     /locus_tag="JBH85_14705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947440.1"
                     /translation="MSKGPYQSFANRLIHTLKDKGHTASRSPNGICIKALAEFTGASE
                     QICRRYIRGDALPDYEKVKQLAHHLHVNPGWLLFGEEGHAAPKKNEVDETLLHYILKQ
                     SHHLYPVSHGSNDDYADFVLGLIKEVRAIDTSENNLLKIIDLAIGSISSYEEQRKKHS
                     HAV"
     gene            538..1128
                     /locus_tag="JBH85_14710"
     CDS             538..1128
                     /locus_tag="JBH85_14710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlgJ"
                     /protein_id="HAU0947441.1"
                     /translation="MDVTAVEVRLHPKAKDFLFEHYITMRKVFSDVLGQVETDYASIA
                     LINQAGQIFFMSSNPAIEQNLIEKSLWLFDGCYQPEFISQDQPKLWSELPHIGCIEAI
                     TKYKQIEPGLITGISIPTEYDSHRAIFSFGLKRINPYIQNKSSIHCEKLLAMGKFALR
                     QIQEYLTLPDKQSCMKTKPKLTLIINNQVNYEHTPG"
     gene            1109..1627
                     /gene="def"
                     /locus_tag="JBH85_14715"
     CDS             1109..1627
                     /gene="def"
                     /locus_tag="JBH85_14715"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HAU0947442.1"
                     /translation="MNTLLDKNDPILRQTAEPIKESEFGSSWLKELIKTMFGIMADKG
                     AVGVAAPQIGISKRVIVFGTNYTKRRKPEYPIPDTALINPALKILSQEIQTGYEGCLN
                     CGELMGEVPRAMEIEYSGFDIDGNRITKKASGLEARILQHEIDHLNGFLFLDRVEDQD
                     SLTTLSAMQSKG"
     gene            1632..>2433
                     /locus_tag="JBH85_14720"
     CDS             1632..>2433
                     /locus_tag="JBH85_14720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HAU0947443.1"
                     /translation="MKHQTRIILAGTLGNLIESFDMAICGLLSVYIAKYLIGDASKGL
                     FLVFLTFFAGYLARPIGAMIMGLLSDIYGRKIILAASILTMGVSTTLIGFIPPHSTIG
                     TFSVITLLVLRVIQSFSCGAEYLNSSAYLVENAEASKKGYSGSWASFGAMSGMLVASL
                     VALLVTYFTNHYPEHDWLVWRVPFVLALLGSSIGLYIRLCIPESMEYIMYYADRPKPK
                     FKSLLSESVNYIKDNKIQSLYVFVLSCLGVTTTFQIYIYGPMQAHLYSH"
BASE COUNT          771 a          498 c          455 g          709 t
ORIGIN      
        1 tttttacgac gttcgattaa aaggataatt ttatgagtaa gggaccctat caatcgtttg
       61 caaatcgctt gatccatacc ctcaaagata aaggacatac tgcatctcgt tcacctaatg
      121 ggatctgtat taaagcccta gcagaattta caggtgcatc agaacaaatc tgccgtcgct
      181 atataagagg tgatgctcta cctgattatg agaaagttaa acaattagct catcatcttc
      241 atgtaaaccc aggctggcta ttatttggtg aggaaggaca tgcagctcct aagaaaaatg
      301 aagtcgatga aacactactt cattacatct tgaagcaaag ccatcattta taccctgttt
      361 ctcatggaag taatgacgat tacgccgatt ttgtgttagg attaatcaaa gaagtacgtg
      421 caattgacac atcggaaaat aatttactaa aaatcattga cttggccatt ggttccattt
      481 cttcctacga agaacaaaga aaaaagcaca gtcatgccgt ttaagaagtt tgtagatatg
      541 gatgtaacag ctgttgaagt aaggcttcac cctaaagcaa aagattttct ctttgaacat
      601 tatatcacca tgcgaaaagt gttctctgac gtactcgggc aagtagaaac agactatgct
      661 tccattgccc tcatcaatca agcaggacag atctttttca tgtcctccaa cccagctata
      721 gagcaaaatt taattgagaa aagtctctgg ctatttgatg gttgctatca accagagttc
      781 atcagccagg atcaaccgaa attatggagc gaacttcctc atataggctg tatagaagca
      841 attacaaaat acaaacagat agaacctgga ctcatcacag gtatttccat ccccactgaa
      901 tatgattctc atagagcaat cttttcattt ggattaaaac gaataaatcc ctatatccaa
      961 aacaaaagct ccattcattg cgaaaaactg ttagccatgg gcaagtttgc gttaaggcaa
     1021 attcaagagt atttaacttt accagacaaa cagtcctgca tgaagactaa gcccaaactc
     1081 acattaatca tcaacaatca ggtgaactat gaacacactc ctggataaaa acgatcctat
     1141 tttaagacaa accgctgagc caattaaaga atcagaattt ggtagcagtt ggttaaaaga
     1201 gctgattaag actatgttcg gcattatggc tgacaaaggt gccgtagggg tagctgctcc
     1261 ccaaattggc atcagcaaac gagttattgt atttggtact aattatacca aacggagaaa
     1321 accagaatac ccgatccccg atactgcatt aattaatcct gcattaaaaa tcctgtccca
     1381 agaaattcaa actggctacg agggatgcct taattgcggt gaattaatgg gagaggttcc
     1441 aagagccatg gaaattgaat attcaggctt tgacatagat ggaaatagaa ttaccaaaaa
     1501 agcttccggc ttggaagccc gtattcttca gcatgaaatt gatcacctga atggattttt
     1561 atttttagac cgagtagaag atcaggactc actaaccact ctatcggcaa tgcaaagtaa
     1621 aggataatcc tatgaagcat caaacccgaa tcatactggc aggcacacta ggcaatttaa
     1681 tagaatcttt tgatatggcc atttgcggcc tactctcagt ctacattgcc aaatacctaa
     1741 ttggtgatgc ttcaaagggt ttatttctag tatttcttac tttctttgct ggatatctag
     1801 ccagacctat tggggctatg ataatgggct tattatccga tatctatggc agaaaaatta
     1861 tccttgcagc gtccatctta acgatgggcg tgtcaacaac ccttatcggg tttatccccc
     1921 cacacagcac cataggtact ttttctgtta taaccttatt agtgttaaga gttattcaga
     1981 gcttctcctg tggtgcagaa tatctaaatt cttcagctta tctggttgaa aatgcagaag
     2041 cctccaaaaa aggctactcg ggcagctggg cttcgtttgg tgccatgtca ggaatgctcg
     2101 tagcatcatt ggtagcatta ttagttactt attttaccaa tcactatcct gaacacgatt
     2161 ggctagtctg gcgtgtacct tttgtccttg cactactagg ttcttccatt ggcttgtata
     2221 tccggttgtg tattcctgag agtatggagt acatcatgta ctatgcagac aggccaaaac
     2281 ctaaatttaa gagtctactt tcagaatcag tcaactacat caaggacaat aaaattcaat
     2341 ctctttatgt atttgtttta agttgcctag gagtaacaac gactttccag atttacattt
     2401 atggtcctat gcaagcccat ttatatagtc att
//
LOCUS       DACVWI010000305         2408 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.306, whole genome shotgun sequence.
ACCESSION   DACVWI010000305 DACVWI010000000
VERSION     DACVWI010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.306"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            74..1318
                     /locus_tag="JBH85_14725"
     CDS             74..1318
                     /locus_tag="JBH85_14725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAU0947444.1"
                     /translation="MKINKTNVENLPLPQAMEAGKTAQKRYYDDNLKGFGIRVTSGGA
                     KAFFVEKFINKKRCRITLGHYPELTAEMAKNKALHLLGQIAMGIDPIAEKKATEVRDI
                     TLNQVFKDYLRTRKNLKPRTIDNYTHILDKAFTHWKSKPMLSITRDRIAKYHEKLGNE
                     HGEAYANLAMRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIEKRKTYIK
                     SHELAAWYTSLQEIQNVTLRDYLLLILLTGLRRQEAATLKWSDLDLKAKTFTINTTKN
                     NESHTLPLSDFLYDLLIARKEKAINDYIFPGSGTAGHIIEPRKTMAHVIKNSGVHFTV
                     HDLRRTFITIAESLDIPAYALKRLMNHKMSSDVTAGYIIVDVERLRKPMQLITDYILK
                     CVGVVKSADIIPIQPEKTELLK"
     gene            1315..2346
                     /locus_tag="JBH85_14730"
     CDS             1315..2346
                     /locus_tag="JBH85_14730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 domain-containing protein"
                     /protein_id="HAU0947445.1"
                     /translation="MNMPELPELLTAIRSILNQARTQLQQTVNHTMVQAYWNVGRLIV
                     EHEQQGKSRADYGQQQIKLLSEQLCKEFGKGFKERNLRNMRNFYLMYPIWQTVSAKLS
                     WSHYCALLRVEKQSAREWYMKETIENVWSVRALERQIDKLYYERLLSSKDKQPVIDEA
                     NSHIEPLKDDPKNYLRDPYILDFLNLPHASVLESNLEQALINNLQQFLLELGKGFAFV
                     ERQQRIATEDQDFYIDLVFYNFKLKCFLLIDLKIGKLTHQDVGQMDTYVRIYDQHRKS
                     SDDNPTIGLILCSEKSEAVAKYSVLTESKQLFASKYLPYLPTEEELRAELERERAILN
                     ELPDIKQKN"
BASE COUNT          848 a          449 c          438 g          673 t
ORIGIN      
        1 tgattttaaa taattgtgcg acacaagtgc gacactcttg cgacacatta aaaagtaagg
       61 gtaaaaatta attatgaaaa taaacaaaac aaacgtagaa aacctccctc ttcctcaagc
      121 aatggaagca ggtaaaactg cacagaagag atattatgat gacaacctaa aaggctttgg
      181 catccgtgta acttctggag gagcaaaagc cttttttgtt gaaaaattca taaataaaaa
      241 acgctgtcgc attactttag gacattaccc agaattaact gctgaaatgg caaaaaacaa
      301 agcgctacac cttttaggtc aaatcgctat gggtattgac cccattgctg agaaaaaggc
      361 gacagaggtt cgagatatta ctttaaatca agtttttaaa gactatctaa gaaccagaaa
      421 aaacttaaag cctagaacta tagataatta cacacacata ttagataaag cattcaccca
      481 ttggaaaagc aaaccgatgt tatctatcac tagagatcgc atcgccaaat accacgaaaa
      541 gctaggtaat gaacatggag aagcctatgc taatttagct atgcggatcc tacgagcctt
      601 attcaatttt gcagcaggcc aatatgaaga taacagcggc cattcccttt tcattgataa
      661 cccagtaaaa cgcctctcgc aaactcgcgc ctggtaccgc attgaaaaac gaaaaaccta
      721 tataaaatct cacgagctag ctgcctggta tactagtttg caagagatcc aaaatgtaac
      781 attacgtgat tacctgttat taatcttatt aactggttta cgcaggcaag aagcagccac
      841 cttaaagtgg tctgatctcg acttaaaggc caagacattc actatcaata caaccaaaaa
      901 caatgaatcc catactcttc cgctttcaga ctttctttat gatttgttga ttgccagaaa
      961 agagaaggcc attaacgact atatctttcc cggctcgggt acagcaggcc atattatcga
     1021 acctagaaag acaatggcac atgtgataaa aaattccggt gttcatttca cagtccatga
     1081 cttgagacga acatttatca ctattgccga aagtctcgat attccagcct atgctttaaa
     1141 acgtttaatg aaccataaaa tgagtagtga tgtaactgcc ggatacatca ttgttgatgt
     1201 agaacgactt cgaaaaccta tgcagcttat tacagattat attttaaaat gtgtgggtgt
     1261 agtaaaatcc gctgacatca ttcctatcca acccgaaaaa acggagcttt tgaaatgaat
     1321 atgcctgaac tacccgaatt gcttacagct atacgttcaa tactaaatca agcacgaacc
     1381 cagctacagc aaacagttaa tcatactatg gtacaggctt attggaatgt tgggcgttta
     1441 attgttgagc atgagcaaca aggtaaaagt agagctgatt atggtcaaca gcaaataaaa
     1501 ttattatccg aacaattatg taaagagttt ggtaagggat ttaaagagcg taatcttagg
     1561 aacatgagaa atttttatct catgtatcca atttggcaga cagtgtccgc caaattgagt
     1621 tggtcacatt attgcgcatt gttacgggta gaaaaacaga gcgcgcgtga atggtacatg
     1681 aaagaaacta tagagaatgt ttggagtgtc agggcattag agcgtcaaat tgataaattg
     1741 tattacgaac gcttattatc aagtaaagat aaacaacctg tgattgatga agccaattct
     1801 catattgaac cattaaaaga cgatccgaaa aattacttac gtgatcctta tattctggat
     1861 tttttgaatt taccacatgc ttctgtattg gaaagtaatc tggagcaagc gcttatcaac
     1921 aatcttcaac aattcctatt agagcttggt aaaggctttg cattcgtaga acgacaacaa
     1981 cgaattgcaa cagaagatca ggatttttat atcgatttag tattttacaa ttttaaactg
     2041 aaatgctttc tacttatcga cttaaaaata ggcaaactta ctcatcaaga tgttgggcaa
     2101 atggacactt atgtaaggat ttatgatcag caccgtaaaa gctctgatga taatcctact
     2161 atcggtttga ttttatgtag tgaaaaaagc gaagcggttg ctaagtattc tgtgttaaca
     2221 gaaagtaaac aactatttgc atcaaaatac ttaccctact tacctactga agaagagttg
     2281 cgtgccgaat tagaacgtga acgcgctatt ttaaatgagt tacctgatat caaacagaaa
     2341 aattagccaa tacctctatt gtcaaccggg ggataaacat tatttttgat ttctagtact
     2401 taaacatt
//
LOCUS       DACVWI010000306         2399 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.307, whole genome shotgun sequence.
ACCESSION   DACVWI010000306 DACVWI010000000
VERSION     DACVWI010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.307"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            82..1413
                     /locus_tag="JBH85_14735"
     CDS             82..1413
                     /locus_tag="JBH85_14735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HAU0947446.1"
                     /translation="MSSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGH
                     YYFTLKDSTAQIRCAFFKNRHSSSLLRNFNDGQQIVASGKLSLYEARGEYQLIVEEIV
                     EAGMGVLYQRFEELKIKLASEGLFNPERKKALPRIPETIGIITSPTGAAIQDILSTLA
                     RRFPIARVIIYPSEVQGQTAPQQLVNALKLANAHKRCQVLILARGGGSIEDLWAFNDE
                     YLARQIAISEIPVVSGIGHETDFTIADFVADYRAETPTAAATAVTPNCIELFNILDTA
                     IYRLHDAIIRLVKGLQLKLYHLMDKIASPRQAISTYWQTLDYLERQLISAMTQFINLN
                     INKVNIFSTQLQANNPKTQIERTKIQLRQLIIQLTQEIRIKVNQLKNQLSTNLSTLHA
                     VSPLATLDRGYAIVSKNQRILFAAQQAQIGDTIDVRLAKGSLACEVTQIKD"
     gene            1410..2324
                     /locus_tag="JBH85_14740"
     CDS             1410..2324
                     /locus_tag="JBH85_14740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HAU0947447.1"
                     /translation="MTKIMKKLLHSLSCLLILISSAKLSYGLALPENHSVNGGLTIIP
                     IDFNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKNTNSVQYINVTKPIKASIPFHV
                     SEKFYNTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRG
                     PITSLFGLKRVYNKQPRDPHSGLDIAADEGKPVYAVNQGVVADTGDYFFTGNTVILDH
                     GMGVFSVYAHLSKILVKTGETVKQGQELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLF
                     VPFRKITVTPVIPDKKSNKSTQDATVKS"
     gene            2321..>2399
                     /locus_tag="JBH85_14745"
     CDS             2321..>2399
                     /locus_tag="JBH85_14745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HAU0947448.1"
                     /translation="MINELTASLNMIVTQTQNNLKILGVI"
BASE COUNT          792 a          498 c          437 g          672 t
ORIGIN      
        1 catctcacta caatataatt ttatttcttt aattagttat tgttgttaac aaccttttga
       61 tttgatggaa tttttaccac catgagtagt caattgccaa tactgaccgt gagtcagctg
      121 aatagacaag tgaaaggttt tctcgagaat gaaataggcc ttgtgcatgt cgaaggcgaa
      181 atctctaact taagcaaacc ttcttcagga cattactatt tcaccctgaa agacagcaca
      241 gcgcaaattc gttgcgcctt ttttaaaaat cgacattcca gttctctgct tagaaatttt
      301 aatgatggtc aacaaattgt tgccagtggc aaattaagtc tgtatgaagc tcggggagaa
      361 tatcagctta ttgttgaaga gatagttgaa gcaggaatgg gggttctcta tcaacgattt
      421 gaagagttaa aaatcaaact ggccagcgaa ggcttattca atcctgagag aaaaaaagca
      481 ctgcccagaa taccagaaac gattggcatc attacatcac ctaccggagc agctatccag
      541 gacattctct cgactctggc tcgtcgattc ccaatagcca gagttattat ttatccaagt
      601 gaggttcaag ggcaaaccgc ccctcaacaa ctagtcaatg ccttaaaact ggctaatgcc
      661 cataaacgat gccaggttct catcctagcg cgcggcggtg gcagcattga agacttgtgg
      721 gcctttaatg atgaatacct tgctcgacaa attgcaatca gcgaaattcc tgttgtttct
      781 ggtattggtc atgaaacaga tttcacaatt gctgattttg tagcagatta tcgtgcagaa
      841 acgcctactg ctgccgctac ggctgttact ccaaactgca tcgaattatt caatattctt
      901 gacacggcta tttatcgatt gcatgatgcc atcatcagac tggttaaagg gttgcaatta
      961 aagctctatc atttgatgga taaaattgcc tcacccaggc aagctatctc aacatactgg
     1021 caaactctgg attatctgga gagacagtta atatctgcta tgactcaatt tattaactta
     1081 aatatcaaca aggtgaatat tttttcgaca caattgcaag ctaacaatcc aaaaacacaa
     1141 attgaacgaa ctaaaatcca actacgacaa ttaataatac aattaaccca agagatccgg
     1201 ataaaagtaa accaattaaa aaatcaacta tccactaatc tttccacttt gcatgctgta
     1261 agccccttgg ctacactaga tagaggttat gctattgtga gtaaaaacca aagaatactc
     1321 tttgctgccc aacaggcaca aattggagat actatcgatg tccgtttagc aaaaggaagt
     1381 cttgcttgtg aggttactca aattaaggat tgactaaaat catgaagaaa ctattacatt
     1441 cactttcctg tctattgata ttaataagct cagcaaaact atcctatggc ctggctctac
     1501 cagaaaatca ttctgtcaat gggggactga ctattattcc tattgatttc aatcagaagc
     1561 ctgaagccta ttttgagggg aaacgcatcc cggttcttcc cagtacccaa ccccggcaat
     1621 ggttgttaat cgttgcaatc ccgcttaaaa ataccaactc tgttcaatac atcaacgtga
     1681 caaaaccgat taaagcttcc attcccttcc atgttagtga aaaattttac aatacccaat
     1741 ttttaaatat aaaagatatc agtaaagtag atcctcaacc cgaagattta atacggattg
     1801 aaaaagaaac caaaaaatta acccaaattt ttgctaatta ctccaatacc aatccatttg
     1861 agaaacaatt cacagcacca ctgagaggac ctataaccag tttatttggc ctgaagagag
     1921 tttataataa acagccaaga gatccgcatt ctggattgga catcgccgct gacgagggga
     1981 aacctgtgta tgctgtaaat cagggagttg tagcagatac cggtgattat tttttcacag
     2041 gcaatacggt tatccttgat catggcatgg gagtattctc ggtttatgct catcttagca
     2101 aaattctggt taaaacagga gaaacagtca aacaaggcca agagcttgga ttagttggta
     2161 tgacaggaag agtaacaggc ccccatctcc actggactat ggtagttaac caaactttgg
     2221 ttgagccttt actttttgta ccgtttcgca aaatcacagt tacaccagtt ataccagata
     2281 aaaaatcaaa caaatcaaca caagatgcaa cggtaaaatc atgattaacg aattaacggc
     2341 cagtttgaat atgattgtca ctcagacaca aaataacctg aaaattttgg gagtaatac
//
LOCUS       DACVWI010000307         2397 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.308, whole genome shotgun sequence.
ACCESSION   DACVWI010000307 DACVWI010000000
VERSION     DACVWI010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.308"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..750)
                     /gene="lem4"
                     /locus_tag="JBH85_14750"
     CDS             complement(<1..750)
                     /gene="lem4"
                     /locus_tag="JBH85_14750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem4/SmdA"
                     /protein_id="HAU0947449.1"
                     /translation="MTTSVSFDETSKRNEGRVKNIVYLDFDGTITGAHGKEVISSPLC
                     EALSTKATFDERMRYKNEYDASDNKIKITENAKNFLQDVNKLHPQVKIVIISRNHENY
                     IKALLEFENIDHRNIIIYPRGVGNTIGPGEDKYKAVVSHEEKPECLPGFRLICDDDEV
                     DGEEMCNGLIHTGRSQLVKFHNEKPGQFKWGEYFKEILTNCDIAVKEYLNGKIGSRFH
                     LFTAKVDEKTGDQSFKDRYSQVKGDILKRAII"
     gene            complement(1239..1841)
                     /locus_tag="JBH85_14755"
     CDS             complement(1239..1841)
                     /locus_tag="JBH85_14755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis protein"
                     /protein_id="HAU0947450.1"
                     /translation="MKKSIERSSDTLLEIASHQELKGEVTYQRILQVLGERAFGIVLL
                     FFALPSALPFSFIPGISLIFSVPILLFAFQMVFARKTMWLPKIIAERTIHQETMAKFI
                     HNTVPYLIKIEYFLKPRWLFMTSRFMEIIHGIVIFFLALLLMLPIPFSNFIFATLLII
                     FSLGLIEKDGLFLIIGYLGVVIYANFVYLFVLTAVKHLFG"
     gene            complement(1964..>2397)
                     /locus_tag="JBH85_14760"
     CDS             complement(1964..>2397)
                     /locus_tag="JBH85_14760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947451.1"
                     /translation="GKLSIMGIICLIIFLVLFFFSVFIMPFLIWELHYNVPDFVSNMI
                     AYLEDTYYYSSSVSKTLVWLTFFIPCLITGYFSYYISRSIDKKNLLKDANIDEEQSKE
                     ISSVTNEHIKESASLGFKILILMAAIILIIFLLQEFVKFTS"
BASE COUNT          831 a          434 c          350 g          782 t
ORIGIN      
        1 aattattgcg cgttttaata tatctccttt tacttgactg tatctatctt taaaagattg
       61 gtcacctgtt ttttcatcta cctttgctgt aaaaagatgg aagcgtgaac ctatttttcc
      121 gttcaggtat tcttttacag caatatcgca attagttaat atttccttaa aatattcacc
      181 ccatttaaat tggcctggct tttcgttatg gaattttaca agttgggagc gtccagtatg
      241 tataagccca ttacacatct cctccccatc tacctcgtca tcatcacaaa tcaaacgaaa
      301 tcctggtaaa cattcaggtt tttcttcgtg tgataccact gctttgtact tgtcttcccc
      361 tggccctatt gtatttccta cgccgcgagg ataaataata atatttcgat gatcaatatt
      421 ttcgaattct aaaagagctt taatataatt ttcatgatta cggctgatta ttacaatttt
      481 tacctgtgga tgtaatttat tgacatcttg tagaaaattc ttggcatttt ctgttatttt
      541 aatcttattg tcagatgcat catactcatt tttatagcgc atcctttcat caaaagtcgc
      601 tttagtactc aaagcttcac acagggggga actaatcact tctttgccat gtgcaccagt
      661 tattgttcca tcgaaatcca gataaacgat gttctttacc ctaccttcat ttctttttga
      721 agtttcatca aaagacaccg acgtagtcat gattatttcc tcgcaaaacc acccaatgca
      781 tatatttaat cattatgatt tgtttatgta caattaattg ttttcataag tcatattatt
      841 tttaataata tccattgttt ttcaatagtt taatgattat ttgtgcgctt gcgctcagct
      901 aaatatgggt tgcattgaaa gaaaaaagaa ctaccagcga aaacataagc ttcctcaact
      961 attttatggg gtttactatt tcgatttgct gcaaaaaaca aagaccatct acccatatca
     1021 tcttattccg ttaatacttg atgttagcca ggcattccat tatatgctga gactccagga
     1081 tagcaaggca tcttaattcg gttatgtgag aacctgaaaa attactgcat caaagttatt
     1141 ccgagtgatt aaagtggaat tttttattta tttacatatg gttaattcaa ctataatgaa
     1201 aaaagtgaac tctaatggtt agtaacacaa gctttcaatc aaccaaacaa atgcttcacc
     1261 gccgtcaaga caaacagata gacaaagttt gcataaatca caacccctag atacccaata
     1321 atgagaaata atccatcttt ttctattaat cccaagctaa aaataattaa caacgtagca
     1381 aaaataaaat tactaaatgg aattggtaac atcaataata gggcaaggaa gaaaataaca
     1441 atcccatgga ttatttccat aaagcgggaa gtcataaaca accatctggg ttttaaaaaa
     1501 tattcaattt taattaagta aggaacggta ttatgtataa acttggccat tgtttcctgg
     1561 tgaatggttc gttccgcaat aatttttggt agccacattg tttttctggc aaaaaccatt
     1621 tgaaatgcaa ataataatat tggaacacta aaaatcaggg agataccagg aataaatgaa
     1681 aaaggcagcg cactaggcaa cgcaaaaaat aaaagcacaa ttccaaaggc acgctctcca
     1741 agcacttgca aaatacgttg ataagtaact tcccccttta actcctgatg acttgcgatc
     1801 tctaaaaggg tatcagaaga gcgttctatg ctttttttca taaaaaatcc aagtcaaaat
     1861 atatagcatc aatttaccaa ctgtttgagg aaaattttta ccttaagaat ttttaaagct
     1921 cacactttct ctaactctgc agaaaacaca gaggtacttc aagttatgat gtgaatttaa
     1981 cgaattcttg taataagaaa atgattaaaa taatagccgc cattagaata agaattttaa
     2041 atcctaaact tgctgactcc ttaatatgtt cattagttac cgaagaaatt tcttttgatt
     2101 gttcttcatc aatgtttgcg tctttcagca aatttttctt atcaatagag cgagaaatgt
     2161 aataagaaaa atacccggta atcaagcaag gtataaaaaa agtcaaccag acaagagtct
     2221 tacttacaga cgaagaataa taataggtat cttcaaggta tgctatcata ttgctaacaa
     2281 agtcaggaac attataatgt aattcccaga ttaaaaaagg catgataaag acactaaaga
     2341 aaaagagaac taaaaaaata atcaaacaaa ttattcccat tatagataat ttgccat
//
LOCUS       DACVWI010000308         2342 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.309, whole genome shotgun sequence.
ACCESSION   DACVWI010000308 DACVWI010000000
VERSION     DACVWI010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.309"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            186..1814
                     /gene="legL5"
                     /locus_tag="JBH85_14765"
     CDS             186..1814
                     /gene="legL5"
                     /locus_tag="JBH85_14765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegL5"
                     /protein_id="HAU0947452.1"
                     /translation="MFQIGEHNMILIYKLTLTKLTEDELKKDFATIPSWATHLDLSNN
                     RLGETSNEELIRVFAKIPGWISHIKLRFNNLGQKNGKDLAKAFAKIPISVTTLDLGSN
                     QLGKKSGEELANAFAGIPTSVTRLILSQNELYKRTGGELATAFAKIPSSVTHLVLVNN
                     GLGEKNGKELATAFANIPSSVTTLDLALNDLSKIKSTELAVIFTKIPTSVTQLDLSHN
                     NLNKKSGKNLAKIFANIPTSVTNLNLSCNELGKKSGKGLAAAFAKIPTSVTDLNIEDN
                     DLDNRTGKELAMAFAHIPAFVNTLRLGDNNLGNKSGEELAEIFAKIPLSVTSLDLRYN
                     ELGKRNGKELAIAFAKIPSSVTNLNLKFNHLGKITGEELAMAFANIPTNVDSLVLANN
                     ELGAKSGEELAKIFSKIPASITSLNMGNDWFAVIEKLSQQKMVLSTITHVVIDYSSAQ
                     EHSAKLKLLATVFPNLNKVTFMDIHGNNALAGQNPIEEAKWLKLCGIKNSVPSLLSQA
                     LFFVAKNKEHRSIQDYPSLLPKELTDSISSLLKC"
     gene            2067..>2342
                     /locus_tag="JBH85_14770"
     CDS             2067..>2342
                     /locus_tag="JBH85_14770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947453.1"
                     /translation="MLVSNTILKAALSHFEDRSDLIKQLDLSSDNDKNSFYKWVLAFW
                     LGSNITREKIIKHPLYIKCEVFIDLGYSCILVLDKQMSLLKQNSLAYK"
BASE COUNT          784 a          443 c          418 g          697 t
ORIGIN      
        1 gattgtcttc tccgaatggt ataacaggag aactggtttt cctagtttta atgattaaac
       61 gggttttcgc taagatgagg tttgcaaaag caaacttatg cttatcttag tgatatccat
      121 atgattcgcc ttaataactc tcctcatctt tttgaatttt ttattcattt aatagcctta
      181 ttaggctgtt tcaaatagga gagcacaata tgatactaat ttataagctt actctgacaa
      241 aacttacaga ggatgaatta aaaaaagatt ttgccacaat tccaagctgg gcaactcacc
      301 ttgacttatc aaacaatcgc ctcggcgaaa caagcaatga agaattaata agagtctttg
      361 ccaaaattcc aggctggata agccatatta aattaagatt taacaacctc ggccaaaaaa
      421 acggtaagga cttggcaaaa gcttttgcca aaataccaat ttcggtgact acgcttgatt
      481 taggttccaa tcaacttggc aaaaaaagtg gagaggaatt ggcaaatgca ttcgcaggaa
      541 ttccaacatc ggtgaccagg cttatattga gccaaaacga actttacaag agaactgggg
      601 gggaactggc aactgcattt gccaaaatcc cgagctcagt aacccatctt gttttagtta
      661 ataatggatt gggtgaaaaa aatggcaagg aattggcaac tgctttcgct aacattccaa
      721 gctcagtgac cacccttgat ttagctctta atgatctttc caaaataaaa agcacggaat
      781 tggcagtaat ctttacaaaa attccaactt ctgtaactca acttgatctg agccacaata
      841 acctcaataa aaaaagtggg aagaacttag caaaaatttt tgccaacatt cctacctccg
      901 taactaacct taatttaagt tgcaatgaat tgggcaaaaa aagtggcaag gggttagcag
      961 ctgcctttgc caaaattcca acctcagtga cagaccttaa tatagaagat aatgacctcg
     1021 ataacagaac tggcaaggaa ttggcaatgg cttttgcaca cattccagct ttcgtgaata
     1081 ctcttcgatt aggagataat aacctcggca ataaaagtgg agaagaatta gcagagatct
     1141 ttgccaaaat cccactatcg gtgacttcac ttgatttacg ctacaatgaa cttggaaaaa
     1201 gaaatggtaa ggagttagca attgctttcg ccaagattcc cagctcagtg actaatctta
     1261 atttaaaatt taatcacctt ggtaaaataa ctggagaaga gctggctatg gcctttgcca
     1321 acatcccaac caatgtcgat tcactcgttt tagcgaataa cgagcttggg gctaaaagtg
     1381 gagaggaatt agccaagatt tttagtaaaa ttccagcttc tataaccagc ttgaacatgg
     1441 gcaacgattg gtttgctgtc atagaaaaat taagtcagca aaaaatggtt ctatctacaa
     1501 taacccatgt ggttatagat tacagctcag ctcaagagca ctcagcaaaa ctcaaattgc
     1561 ttgcaactgt ttttcctaat ctaaataaag tcacttttat ggatattcat ggaaataacg
     1621 ccctagctgg tcaaaatcct atagaggaag ctaaatggct gaaattatgt ggcattaaaa
     1681 attccgtgcc ctccctactc agccaagcct tgttttttgt tgcaaaaaat aaagaacata
     1741 ggtccattca agattaccca agcctgcttc ctaaagagct tactgactca atttcatcgc
     1801 tattgaaatg ctaaaacaag atttgtattt cttacacgga tcagctcaat aattatccat
     1861 ttcacgtggt gccattttaa tgatggtacc atctttatga tgtaaatcta acttcatcca
     1921 ccgattgtat aggtagtggt attgcagaaa atatcaggtt acctgaatta ctttccacag
     1981 aaaaacttac ccacatttga aatatttttg caaattctga atataaaatt gctataatac
     2041 ggtgtttttt actatttttt gaactcatgt tagtttccaa tacaattctc aaggcggcat
     2101 taagccattt cgaagacaga agtgatttaa tcaaacaact ggatttgtct tctgataacg
     2161 ataaaaactc gttttacaaa tgggttttgg cgttttggtt gggttcaaac atcactcgcg
     2221 aaaaaattat caaacaccct ttgtacataa aatgtgaagt ttttattgat ttgggttact
     2281 cgtgcatttt ggttttggat aaacaaatga gcttgttaaa gcaaaattca cttgcttata
     2341 ag
//
LOCUS       DACVWI010000309         2340 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.310, whole genome shotgun sequence.
ACCESSION   DACVWI010000309 DACVWI010000000
VERSION     DACVWI010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.310"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(96..578)
                     /locus_tag="JBH85_14775"
     CDS             complement(96..578)
                     /locus_tag="JBH85_14775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HAU0947454.1"
                     /translation="MNYVYLKSVAEVEDNFMNYYSILLTIKRLIIGLLPILLVACTHQ
                     QSHGPDHYVVRGKTYHVMKSAKHYKAKGIASWYGSHARHQKTSTGERYNMYAMTAAHP
                     TLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV
                     "
     gene            complement(841..2208)
                     /locus_tag="JBH85_14780"
     CDS             complement(841..2208)
                     /locus_tag="JBH85_14780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0947455.1"
                     /translation="MALLSFLKPAPYLDEIQDKNVVKRQYRYWRIRTFYAMYIGYALF
                     YFTRKSFTFVMPALQSTLGMTKTELGMIASILSLSYGISKFLSGILGDKSNPRYLMAI
                     GLILTGVFNILFGLSSTWWLFAIFWGLNGWFQGWGWPGCTKLLTHWYSQSERGRWWSL
                     WNTSHNVGGALIPLIVAVCAQYFGWRSAMFVPGIICILGGVFLINRLRDTPQSLGLPA
                     IEQYHEDFSGSTNHHQEKTELSVKEILWNYVLCNQYIWILSISYLFIYIVRTAINDWS
                     MLYLTEVKEYSLITAGSCVIWFEVGGFFGNLVAGWSSDKIFQGKRNPINVLFTAGVFA
                     TLLLFTLTRAYTPFLDALFLFFFGFFIFGPQMMIGMACAELAHKKAAATATGFAGFFA
                     YCLGAVLAGAPLGAIIKNYGWDNFFLTLFVCCLIPLLLMLPLWHVKVNPKYRQSEFSG
                     KSEFA"
BASE COUNT          795 a          481 c          422 g          642 t
ORIGIN      
        1 tgatgaatag gacgatttct taattttaga ttatttaata agttaaccag gtaaatcagg
       61 ttattagctt gagtaagctt tacttcttag cattttcaaa cgacttcaat ttcaacagga
      121 gcaatgcctt ttataccgag ttttttagcg gcagcaaagg ataaatcaat tagcctgttt
      181 gataaaaaag gacctctatc gttaattcga accacaaccg atcggccatt attcaggttt
      241 ttgacacgta ctcgtgtagc aattgggagc gttggatgag cggctgtcat cgcatacatg
      301 ttgtaacgct ctccggtcga tgttttttgg tgccgagcgt gtgacccata ccaggaagca
      361 attccttttg ctttgtagtg tttggcagac ttcatcacat gatatgtttt ccctctgact
      421 acatagtgat ccggaccatg agattgctga tgcgtacaag caaccagtag tatggggagt
      481 aaacctataa tgagtcgttt aatggtcaac aaaatcgaat aataattcat aaagttatct
      541 tctacttccg ctacagattt taaatatacg taattcatag atcacgagaa tcaaagatat
      601 ttcttgcaaa gaaaatcgtc aataggtaac acatttttat catttgcttt catcattgat
      661 ttgattgatt atacattttt tggatgaata tgtaccaaca aatttttctg tataacctct
      721 tgtcctatca caacaaggat atctctatac cccaggggca ttcatgtgga ggtagcaaga
      781 gcaggtcggg ccaaggcagg tccgacctac tttttctgga ttaccctggg aagccaatca
      841 ctaagcaaat tcggatttgc ctgaaaattc tgattgacga tactttggat taactttcac
      901 atgccagagc ggcagcatca aaagtaatgg aatcaagcag caaacaaaca atgtgaggaa
      961 gaaattatcc cagccgtaat ttttgataat tgcacccaaa ggagcaccgg ccagaacagc
     1021 acctaaacaa taagcaaaaa atccggcaaa gccagttgca gtcgccgctg cttttttatg
     1081 tgctaattcc gcacaggcca taccgatcat catttgtggt ccaaagataa aaaaaccaaa
     1141 gaaaaaaaga aacaaagcat cgaggaacgg tgtatatgcc ctggttaacg taaacagcaa
     1201 taaagtggca aatacgcctg cagtaaaaag aacgttgatt ggattgcgtt taccttgaaa
     1261 tattttatca gaagaccagc cggcaaccag atttccaaaa aagccaccaa cttcaaacca
     1321 tatgacacaa ctgcctgcag tgattaagga atactctttc acttccgtta aatacaacat
     1381 gctccaatca ttaatggccg ttcggacaat gtaaataaac aaataagaaa tggacagtat
     1441 ccaaatatat tggttgcaca acacataatt ccaaagaatt tctttgactg agagttctgt
     1501 tttctcctgg tggtgatttg tggaaccaga aaaatcttca tgatattgct ctatcgcggg
     1561 taaaccaagt gattgtgggg tatctcttaa acgattgatt aaaaaaacac ctcctaaaat
     1621 gcaaatgatc ccaggcacaa acatggctga acgccagccg aagtattgcg cgcacacagc
     1681 aacaatcaaa ggaattaatg caccaccaac gttgtgtgat gtattccaaa gactccacca
     1741 acggccacgc tccgattgag aataccaatg tgttaataat ttagtacatc ctggccagcc
     1801 ccacccttga aaccaaccat tcaatcccca aaaaatagcg aataaccacc aggtagaaga
     1861 caatccaaac aaaatattaa aaacacctgt caaaatcagt ccgatcgcca ttaaataacg
     1921 aggattagat ttatcaccaa gaattccact caaaaatttg ctgataccat aacttaaact
     1981 caaaatgctg gcgatcattc ccagttcagt tttagtcatc cccaaggtgc tttgtaacgc
     2041 aggcatcacg aaggtaaaac tctttcgcgt aaaataaaac aacgcatacc ctatatacat
     2101 tgcataaaag gtgcgaatac gccaataacg atattgccgt ttaacaacgt ttttatcctg
     2161 aatttcatca agatatggag caggttttag aaaactcaat aatgccatga ttgtccatga
     2221 tcatgaaaaa aacatgatta gaatgtaact cgcaaagtat gtcaaatctt tctagtgaaa
     2281 atttaacagg atcataccta ttgatgattg aaataaaaat ttaatggaat tcttgtgaat
//
LOCUS       DACVWI010000310         2339 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.311, whole genome shotgun sequence.
ACCESSION   DACVWI010000310 DACVWI010000000
VERSION     DACVWI010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.311"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(132..1655)
                     /gene="ankQ"
                     /locus_tag="JBH85_14785"
     CDS             complement(132..1655)
                     /gene="ankQ"
                     /locus_tag="JBH85_14785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkQ/LegA10"
                     /protein_id="HAU0947456.1"
                     /translation="MLMAATIPHIETITFTDWFLAIIDTPDIPIDEIEIRVAEGFKRK
                     LTERQFQQLTELIHLISFIKHKKISNPTLALRIYVDENTSSLSRTALVEAVRMLPPED
                     NKTYELAAYLAQKNKLERYTNITKVPPLQIYQGDGVFEQYDEWILLFELFGLTQATPS
                     DFIPAIAHLLITKNLGIPDLRALSKFMSTTHKLGILSQSFMNNMTPHLCNGQIIEKYE
                     SLLLKLQINDLLTEEILEVIYPLLNQPDALDAFFSLYHEEPSHDSALSFLREILPSFC
                     AMSLPSKESYDDQVPTNTPLHLAVIESDKGNLERTLAFANRNLLIKCSYENTALLLAC
                     KLADKESARLILAKMQELGCDVNQRDHHGMTALHWANFYHFDELIRELEIAGADPQLK
                     AANGKTCEYFYQHQFTLKDLKLNGKEIIDGEFKLSDCALTDIAFHMDKIALNLKLTTP
                     SEIAELYARDEIAQIRSSNRFYLFFKLFRPKLINWLEKQNDLEPQVTYRFSGQSSSA"
     gene            1913..>2339
                     /locus_tag="JBH85_14790"
     CDS             1913..>2339
                     /locus_tag="JBH85_14790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter suffix domain-containing protein"
                     /protein_id="HAU0947457.1"
                     /translation="MKFRFRFYLGIVLLILAIVCPLLIPLIVQSNFSVLIKGFLSSML
                     VFGLPEILIVLAIALLGKEVYGLIEQKIKNILFKEKVSKTRYRLGLVFFAFPLVIGLL
                     EVFVKEITLAYGSYYYWVEIIWTTMFALSFFICGKQFWDK"
BASE COUNT          692 a          380 c          463 g          804 t
ORIGIN      
        1 tattttagcc ttatttttga aaaataaaag aacggttaga tttatatttt ttcataaatc
       61 agggcgcttt accttgtata gaacagagca agtaaattgc tagttgtact gggtttgtta
      121 agttaatgat atcaagcaga agaactttgc cctgagaaac gataagtcac ttgaggctcc
      181 aggtcatttt gcttctctaa ccaattgatt aattttggcc ggaataattt aaaaaacaaa
      241 tagaaccggt tgcttgaacg aatttgtgct atttcatccc ttgcgtacag ttctgcaatc
      301 tcggatggtg ttgttaattt taaatttaag gctattttat ccatatggaa agcaatatcc
      361 gtcagcgcac aatcacttaa cttgaattca ccatcaatga tttctttgcc atttaatttt
      421 aaatctttca aagtgaattg atgttgatag aaatattcac aagtttttcc attggctgct
      481 tttaattggg gatccgcccc agcaatctct agctccctga ttagctcatc aaaatgataa
      541 aaattagccc agtgcagcgc ggtcatgcca tgatgatctc tttgattgac atcacagcct
      601 aattcctgca ttttcgctaa aatcaatcgg gctgactctt tatcagcaag tttacaagct
      661 aataaaagtg ctgtattttc ataagagcat tttattagta aattgcgatt ggcaaaggct
      721 aatgtccgtt ccagattccc tttatcactc tcaataacgg ccagatgcaa aggcgtgttt
      781 gttggtacct gatcgtcata gctttcttta ctggggaggc tcattgcgca aaaggatggc
      841 aaaatttctc tcaagaaaga cagagcgctg tcgtgcgatg gttcttcatg atagagtgaa
      901 aaaaaagcgt caagagcatc tggttgattg aggagtggat agatcacttc cagaatttcc
      961 tcagttaaca aatcgttaat ttgtaattta agcaataatg actcatactt ttctatgatt
     1021 tgcccattac ataaatgggg agtcatatta ttcataaaac tttggcttaa tatgcctagt
     1081 ttatgcgtag tgctcataaa ttttgaaagt gccctaagat caggaatacc aagattcttg
     1141 gtgattaata aatgagcaat ggcaggaatg aaatcgctgg gcgttgcctg ggttaaccca
     1201 aacagttcaa aaagaagaat ccattcatcg tattgctcaa atacgccatc cccctggtaa
     1261 atttgcagag gaggcacttt cgttatgtta gtatatcgtt ccagtttgtt tttttgagcc
     1321 aaataggctg ctaactcata ggttttatta tcttcaggtg gaagcatcct gactgcttca
     1381 accaaagcag ttcttgatag agagctcgta ttttcatcaa catagatgcg gagagccaag
     1441 gtaggattgg agattttctt gtgcttaatg aaactaatta aatggattaa ttccgttaat
     1501 tgttgaaatt gccgttctgt caattttctc ttaaagcctt cagctactct gatttcaatt
     1561 tcatcgatgg gaatgtctgg agtgtcaatg attgccagga accagtcggt aaaagtaatt
     1621 gtttcaatat ggggaattgt tgcggccata agcattcctt aaataaattg tcaatattat
     1681 aaacaaaaag ctttattttg ataacaataa aatgacattt tgtaaaataa atacaatgca
     1741 agagttttaa gcgtcataga gtccaattgt atggcgtcgg gtggtttata gggcgaaaac
     1801 ggatgagcaa ggctttattt aaaattgcaa gaattaatta ttcattttgt agatagtcaa
     1861 tcttcttatg gattactatt tgtaagtaag gtaaatagtg ggagtaacca tcttgaaatt
     1921 tcggttccgt ttttatctgg gtattgttct tttaattttg gcgatagtat gtcctttgct
     1981 gatcccatta attgtgcaat ccaatttctc agtgctgata aaggggtttc tatcttcaat
     2041 gttagtgttt ggtcttccag aaattttgat agtcttagct atcgctttac ttggaaaaga
     2101 ggtgtatggc cttatcgagc aaaaaattaa aaatatcctt tttaaggaaa aagtctcaaa
     2161 gactcgttat cgtttaggtt tggttttctt tgcctttcca ttggttatag ggttgctgga
     2221 ggtgtttgta aaagaaatta ccttagccta tggaagttat tattattggg tggaaattat
     2281 ttggacaacg atgtttgctt taagcttttt tatttgcggg aaacaatttt gggataaat
//
LOCUS       DACVWI010000311         2308 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.312, whole genome shotgun sequence.
ACCESSION   DACVWI010000311 DACVWI010000000
VERSION     DACVWI010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.312"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..563)
                     /locus_tag="JBH85_14795"
     CDS             complement(<1..563)
                     /locus_tag="JBH85_14795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947458.1"
                     /translation="MRILNKRVSMQYQPIMKQIRAAISKNDADQLLNITSADWVMVYL
                     YTDHIFLNSFTVEQENFDLYDSDEILSLDFPLKESSISCFKHSEDDGYSSSMEVSHEF
                     GLDNSLMWPLFFSRANYKDGKLITQYELLQHFVHANGLYLDNEKGTFNLINEDGDVEP
                     RALIIVEQNFNLILFERKALDYYLGYA"
     gene            complement(566..1057)
                     /locus_tag="JBH85_14800"
     CDS             complement(566..1057)
                     /locus_tag="JBH85_14800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003634962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-diphosphocytidyl-2C-methyl-D-erythritol
                     kinase"
                     /protein_id="HAU0947459.1"
                     /translation="MKQGGSYANSSGKVLEGLVEFALTKKGFTVTRYKDWKLNPSNFG
                     EELLLKNVPYEGIYKHASTTEFVLISKAYNLNTRIECKWQQVSGSADEKLPYLFLNCS
                     EKMFEPHIIILLDGGGSKTGAVNWLREECDKFNLSQSNASKRQIDLMDMTDFVKWVNT
                     VFK"
     gene            complement(1068..1904)
                     /locus_tag="JBH85_14805"
     CDS             complement(1068..1904)
                     /locus_tag="JBH85_14805"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HAU0947460.1"
                     /translation="MIKNSEKESIIRIRPFLKWAGGKFQIINKIRASLPKGARLIEPF
                     VGSGAVFLNTNYNKFILADINADLINLFEHLKFEKHDFIHFCKQFFTAEFNKKSTFLS
                     LRTEFNSTTDSHLKAALFIYLNRHAFNGLMRYNSSGMFNTAFGDYKKPYFPENEMLVF
                     IQKAEKAEFKCADYSVIMGEAIKGDVVYCDPPYVPLSASANFTKYHSTAFGQEDQRRL
                     VELAKELAAKGIPVILSNHDTAFTQNLYQGSSIISFEVQRNISCNGSTRGRAREMLAL
                     FN"
BASE COUNT          756 a          453 c          340 g          759 t
ORIGIN      
        1 tttgcataac ccaagtaata atctaatgct tttctttcaa aaagtattaa attaaaattc
       61 tgctcaacta ttattaatgc ccttggttct acatcaccat cctcgtttat taaattgaaa
      121 gtaccctttt cattatccaa atacaaacca ttagcatgaa caaaatgttg taataattca
      181 tattgggtaa ttaatttccc atctttatag tttgcacgac tgaagaaaag tggccacatt
      241 aagctattat ctaaaccaaa ctcgtgtgaa acttccattg aactactata accatcatct
      301 tcgctatgct tgaagcaaga aatcgaagac tcttttaaag gaaaatctaa ggacaaaatc
      361 tcatctgaat catataaatc aaaattttct tgctcaacgg taaatgagtt taggaaaata
      421 tgatctgtat ataaataaac cattacccaa tctgctgaag taatattcaa taattgatca
      481 gcatcatttt tggagatggc cgctcttatt tgcttcataa ttggctgata ttgcatggaa
      541 actctcttat tcaatattct catctctatt taaaaactgt attaacccat ttaacaaaat
      601 cggtcatatc cattaagtct atttgccgtt ttgaagcatt tgactggctt aaattaaatt
      661 tatcacactc ctcacgtagc caatttactg ctccagtctt tgaaccaccc ccgtcaagta
      721 aaataataat atggggctca aacatttttt cagaacaatt caaaaacaaa taaggtagtt
      781 tttcatcagc actcccagaa acttgttgcc atttacattc aattcttgta tttaagttat
      841 atgccttaga tattaagaca aactcggtgg tactggcatg tttataaatt ccttcatatg
      901 gcacattttt taataatagc tcttcgccaa aattcgaagg gtttaatttc caatccttat
      961 aacgagttac agtaaagccc ttttttgtta gagcgaactc tactaatccc tcaagaacct
     1021 ttccgctact atttgcatat gaaccaccct gcttcatggc aacaccccta attaaatagg
     1081 gcaagcattt cacgtgctcg tccccttgtg ctcccgttac aactgatatt ccgttgcacc
     1141 tcaaaactga taatgcttga tccttgatat aaattctgag taaaagccgt atcatgatta
     1201 gataaaatta caggaatccc cttcgcagcc agttctttag ctaactcaac taatcgtctc
     1261 tggtcttctt gtccaaaagc tgtggaatga tattttgtaa aattggctga tgcagataat
     1321 ggaacatatg gggggtcgca ataaactaca tctcctttaa tagcttctcc cataattacg
     1381 ctataatcag cacatttaaa ttctgctttt tccgcttttt gaataaaaac caacatttca
     1441 ttttctggaa aataaggttt tttataatcc ccaaaagccg tgttaaacat gccagaactg
     1501 ttgtacctca tgaggccatt aaaagcatga cgattgagat aaataaatag tgcagccttc
     1561 aagtggctat ctgtagttga attaaattct gtacgcaatg ataggaaggt tgatttttta
     1621 ttaaattcag cagtaaaaaa ttgcttacaa aaatggataa aatcatgctt ttcaaacttc
     1681 aaatgttcaa acaagttaat tagatcagca ttaatatcag cgagtataaa cttgttatag
     1741 ttcgtattta aaaaaactgc tcctgaacct acaaacggtt caatcaaacg agccccttta
     1801 ggtaggctcg cacgaatttt atttattatc tggaacttac cgccggccca ttttaaaaat
     1861 ggtctaatgc ggattattga ttccttttca ctatttttta tcattattta tcctttttat
     1921 ctaattttag cctagtttag aaaattagga ctcatttatg ctctataatt aaacagtggc
     1981 gctccgcctt atgttatttc actttgagaa aattgctatt ggaacagggc aataaagctc
     2041 aaaacctagg atttactagg gaagtaactg aaggagtact tgatgctaca tagcaaaaaa
     2101 accgtttttg taaggcaaca ttggagaaag ctatacagcg atcccattta tgttcggtct
     2161 tactggcggt cacctcctag taggtaaact ctactaaagg catttgcgcc acccatttcg
     2221 attcgctaaa agtaaaataa tgaggcaaaa aatcaaacaa ataagtttgt ttttgcttac
     2281 agacaaaaat gcagtacccc ataattgc
//
LOCUS       DACVWI010000312         2255 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.313, whole genome shotgun sequence.
ACCESSION   DACVWI010000312 DACVWI010000000
VERSION     DACVWI010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.313"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            41..1582
                     /locus_tag="JBH85_14810"
     CDS             41..1582
                     /locus_tag="JBH85_14810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HAU0947461.1"
                     /translation="MTNTTDFYSITPLDKARWQKILINKITVRTLGKIFVFIMAITIM
                     ITLFNFSYATDSKLKPTVITVSEEEFQVDGKGKKTKEFKLTFTHPDGTKDNKGYFANK
                     GDMFHVLVENKSASPITLHWHGLIVPSDQDGVPDVSQILIQPGQNKLFNYRLLQAGTY
                     WMHSHQKFQEQKQLSAPLIIYDKDDPHKDLQEVILFLEDFTYKDPQLIFDQLRTAKMD
                     MKAMDSGNDLNDVTYDAFLANKKTFAAPDVISVQPLKKVRLRIINASSSTNFKIDTGK
                     LSATLIAVDGENIEPIVDSSFPIGVGNRMDLLVEIPSAGGAFPIKAMAEGTNKQTGLI
                     LKTDNTPTPILSPNTTNKTGRVNYYELEKKLKGKNALTNKKINARLHYVLDGQMNGYI
                     WTMNKQSWPDVSPKVIHFGDRVEMIYENKSSMSHPMHFHGHVFQVTEIDGQPLDGAMR
                     DTLLVQPHSTVKVQFDALNPGIWANHCHNLYHLNAGMFTTFEYQHYPKPDFYLKTIRQ
                     SKNNN"
     gene            complement(1637..>2255)
                     /locus_tag="JBH85_14815"
     CDS             complement(1637..>2255)
                     /locus_tag="JBH85_14815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HAU0947462.1"
                     /translation="ASGHAFSCYDPQTIIQKPIQFDKKRIALTREYQLTHYGIDSESI
                     EIEPKMIVLHWTCIPSLDTTFRIFDPPALPSSSPRRNELPGDLNVSSHFLVDRDGTIY
                     QLMPETWMARHVIGLNHYAIGIENIGGVDSKDDLTEEQAKANAFLVCYLKNKYPQIKY
                     LIGHNEYLQFKGTALWLEKDPNYQTDKTDPGPTFAKKVKQLVLAS"
BASE COUNT          748 a          466 c          412 g          629 t
ORIGIN      
        1 aaaagattat aaatatcatg gacatggaca gatcataaaa atgaccaata caacagattt
       61 ttattcaata actcctctgg acaaagcccg ttggcaaaaa attctaatta ataaaattac
      121 agtgcgcact ttgggtaaaa tattcgtttt tatcatggca ataactatca tgataaccct
      181 ttttaatttc tcttatgcaa cagatagcaa acttaaaccg acggtcataa ccgtcagtga
      241 agaggaattc caggtcgatg gtaaaggaaa aaaaacaaag gaatttaaac tcacctttac
      301 ccacccggac ggcacaaagg acaacaaagg ttactttgcc aataaaggag atatgtttca
      361 tgttttagtt gaaaataaaa gtgcgtcacc aataactctt cattggcatg gattaattgt
      421 cccaagcgat caggatggag tacctgacgt gagtcaaatc ctgattcaac cagggcaaaa
      481 taaattattt aactacagat tattgcaagc cggaacctat tggatgcact cgcatcaaaa
      541 atttcaagag caaaagcaac tttctgcccc tttgattatt tatgacaagg atgacccgca
      601 taaagactta caagaagtca ttctgttttt agaggatttt acttacaagg atccccagtt
      661 aatatttgat cagttaagaa ccgctaaaat ggacatgaag gcaatggatt ccggtaacga
      721 tttgaatgac gtgacctatg atgcatttct cgccaacaaa aaaacattcg cagcacctga
      781 tgtaatttca gttcaaccct taaaaaaagt gaggttacga atcatcaatg cgtcttcctc
      841 caccaatttt aaaattgata ccgggaaact atcagccact ttgattgctg ttgatggtga
      901 aaacattgag ccgattgtag atagttcttt tcctattggc gttggtaatc gtatggattt
      961 gcttgttgag attccttctg caggcggagc attccctatt aaagccatgg cagaaggaac
     1021 aaacaaacaa accggtctaa ttctaaaaac agataacaca cctaccccga tactatctcc
     1081 caataccacg aataaaacgg gacgtgtcaa ctactatgag ttggaaaaaa aactaaaagg
     1141 aaaaaatgct ttaaccaata aaaaaataaa tgctcgtttg cactacgtgc ttgacgggca
     1201 gatgaatggt tatatttgga ccatgaacaa gcaaagctgg ccagatgtct cgccaaaagt
     1261 aatccatttc ggtgatcgtg ttgaaatgat ctatgaaaat aaatcctcta tgtctcaccc
     1321 catgcatttc catgggcatg tctttcaagt aaccgaaatt gatggtcagc cattggatgg
     1381 agccatgcgc gataccctgt tagtccaacc gcattcgaca gtgaaagtac agtttgatgc
     1441 gctaaaccct ggcatctggg ctaaccattg ccataattta tatcatttaa acgcaggaat
     1501 gtttacaacg tttgaatacc aacactaccc aaaacccgat ttttatttaa aaactataag
     1561 gcaatccaaa aataacaatt aacagctaaa cagaaatccc aacggacatt acctgcataa
     1621 gcgcctatac ttctacttat gacgcaagga ctaattgttt tactttttta gcaaacgttg
     1681 gaccaggatc tgttttatcg gtttgataat ttggatcctt ctccaaccac aaagccgttc
     1741 ccttgaactg caaatactca ttatgaccaa taaggtattt tatttgcggg tatttgttct
     1801 taagatagca cacaagaaag gcatttgcct tggcttgctc ctcagtcaaa tcgtctttac
     1861 tatcaacacc gccaatattc tcaataccaa tcgcgtaatg attcaagcca atcacatgcc
     1921 ttgccatcca tgtttctggc atcagttgat aaatagttcc atcccgatcg actaaaaaat
     1981 ggcttgatac atttaaatcc ccgggcaatt catttcgtct tggcgaactg ctgggtaaag
     2041 cggggggatc aaatatgcgg aaagtagtat cgaggcttgg tatacaagtc caatgcaata
     2101 caatcatttt aggctcaatt tctatcgact cggaatcaat accataatga gtaagctgat
     2161 attcccgggt taaggcaatc cgttttttat caaactgtat gggtttttga atgatagtct
     2221 gtggatcata gcaagagaac gcatgcccag aggcg
//
LOCUS       DACVWI010000313         2237 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.314, whole genome shotgun sequence.
ACCESSION   DACVWI010000313 DACVWI010000000
VERSION     DACVWI010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.314"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(206..1027)
                     /locus_tag="JBH85_14820"
     CDS             complement(206..1027)
                     /locus_tag="JBH85_14820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HAU0947463.1"
                     /translation="MRKLLIVFSIFLASCQTTHDKPDLTNKKRQTTHTKNSVYDRYKY
                     KSNRYTIQQDGAPKQAKQVSFKEPVPVKEPLSRYGNPSEYYVDGRTYEVMKSSTGYKT
                     RGIASWYGTKFHKQRTSSGEPYNMYVMTAAHKTLPLPTYVKVRNLENGKVAIVKVNDR
                     GPFHANRVIDLSYAAALKLGVFPKGTAHVEIETLMGPAGQGHYYLQAGAFSSEALAKR
                     LKEKLLHITPSPVFIEHYKQHYIVRVGPFGNKSMADNLKTKLSNNGIKGSFSVLI"
     gene            1154..>2237
                     /locus_tag="JBH85_14825"
     CDS             1154..>2237
                     /locus_tag="JBH85_14825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HAU0947464.1"
                     /translation="MPFGRLQKAVIRYIYFATISGNIMTRATSFLLTLLFFITLFVQS
                     TNSMADEVLPSSDLQRPSPTVTTKPFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEK
                     LPPASLTKMMTLYVISNALKSGQIHLNDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLL
                     KGIIVDSGNDACVAMAEHLGGSENAFTDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTT
                     AKDLAILGRALILDFPEYYDWYKQKWFTYNGIRQPNRNRLLWRDSQVDGIKTGHTNDA
                     GYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEKLLNYGFRFFETHQLYKSGQSIAEL
                     PLYKGTSDKVAVGLTEDQFITIPAGQY"
BASE COUNT          671 a          387 c          438 g          741 t
ORIGIN      
        1 tagttagaac tagggtgata tctattgatg agaatgtcat cgatagagtc ataatgtgct
       61 gatataatta acacaagcta tgcacacatt cagaatcagt ctgagtataa tgttacacct
      121 aaaactattt ctttcccaaa ctattctgag tggttttttc ttaattctaa agatataaat
      181 taaccggttt tttccacgaa acaaattaaa ttaacacaga aaaagatccc tttattccgt
      241 tatttgataa ttttgtttta aggttgtcag ccattgattt gttaccaaaa ggccctactc
      301 ggacaatata gtgctgttta tagtgttcaa taaacaccgg cgacggtgta atgtgaagta
      361 gtttctcttt caaacgcttt gccagggctt ctgaagaaaa ggctcctgcc tgcaaataat
      421 aatggccttg cccagcaggc cccattagcg tttcaatttc aacatgagca gttcctttgg
      481 gaaaaacccc cagttttaat gcggcagcgt acgagagatc tatgacacga tttgcgtgaa
      541 atggccctct gtcattaacc ttaactattg cgactttgcc attttccaag tttcttactt
      601 tgacataagt cggcaaaggt aatgttttgt gggcagcagt catgacatac atgttatagg
      661 gttcgccact ggaggtacgc tgtttatgaa attttgttcc ataccatgag gcaataccac
      721 gagttttata ccctgttgag cttttcatga cttcataagt acgcccgtca acataatatt
      781 cagaaggatt accatatctg cttaatggtt ctttgacagg cactggttct ttaaagctta
      841 cctgtttggc ttgtttggga gctccatcct gctgtattgt ataacgattg gacttgtatt
      901 tatatcgatc gtagacagag tttttagtgt gagtggtttg gcgtttttta tttgttaggt
      961 cgggtttgtc atgagtagtt tggcaacttg ctaaaaaaat tgaaaaaaca ataagtagtt
     1021 tacgcatatt ctttgatatt tcttgttgtt atgagttatt gctaatatta ccaaaaaata
     1081 ataattttcg aagtgcgatt agattaattc gcatcttaat ttagctttat aaaaaaatat
     1141 aaatattttt aatatgccat ttggccgcct gcaaaaggct gtgataagat acatttattt
     1201 tgcaactata tcaggtaata tcatgaccag agcaacgtct tttttattga cgctattatt
     1261 ttttattact ttatttgtac agtctaccaa ttcaatggct gatgaagtgc tcccttcctc
     1321 tgatttacag aggccttcac ctacagtcac aacgaaacct tttacaactc cggctgctcc
     1381 attgcttaat gccaaagctt atattttaat tgatgtgaat agtggaaaag taattgcaga
     1441 aaagaatagt gaggaaaaat taccacctgc cagtttgact aaaatgatga cattgtatgt
     1501 catttctaat gcattgaaga gtggacaaat tcatcttaat gatatggtaa gagtgagccg
     1561 tgatgcatgg caaacaggtg gctctcgtat gtttataaaa gagggggatc aggtctctgt
     1621 tgaagacctt ttaaaaggta ttatagtaga ttctggcaat gacgcttgtg tggcaatggc
     1681 agagcatctt ggtggttccg aaaatgcttt taccgacatt atgaatcagc aagctcaaaa
     1741 tctgggtatg aaaaatagtc attttacaga cagtactgga ttacctgatc ctaatctata
     1801 tacaactgct aaagatttgg cgattttagg ccgagcctta atactcgatt tccctgaata
     1861 ctatgactgg tataaacaaa aatggtttac atataacggt atacgccaac ctaatcgaaa
     1921 tcgtttgttg tggcgagata gccaggttga tggtataaaa acaggccaca ccaatgatgc
     1981 tggatattgt ctagtatctt ccgcaaagcg taataacatg cgtttattag ctgtggtttt
     2041 aggggaaccc agtgattctg tgcgagctga tgacagtgaa aaattattaa attacggatt
     2101 tagatttttt gaaacacatc aattatataa atctgggcaa tcaattgctg aattaccgct
     2161 ttacaaagga acttctgata aagttgctgt gggtttaaca gaagatcaat ttattacgat
     2221 acctgccggt caatatg
//
LOCUS       DACVWI010000314         2226 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.315, whole genome shotgun sequence.
ACCESSION   DACVWI010000314 DACVWI010000000
VERSION     DACVWI010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.315"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1625
                     /locus_tag="JBH85_14830"
     CDS             <1..1625
                     /locus_tag="JBH85_14830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HAU0947465.1"
                     /translation="IWIISVVAAATSLIFLFVDSQVFSMFKFHLNKTILSFIFNSDWS
                     VIFTFSRYELILSFFMIVFILFLESIVAWLVWKKIVLKERLKIGKTISLFWLGGALIS
                     YFILLLSIAQNNNLFAQQIPNLPLYNQLIAYTIPDKNADDILRRYSEHHFTQPLFPNY
                     PLHYPLHPMQCKMPEKPYNIILIMVDSLRYDSLRAKYMPNTAQFAKRSWQFSQHMSAG
                     NATQPGLFSLFYSIPSNYSTAVLEQKKSPVLIDLLLQHGFQTKIIWSGSMAPLPLDQT
                     IYKKIANLNTNGAPIDDTGDKDRYSTKEAIQFLTDPKTNNPFFLHIFYNAPHDYCRYQ
                     SFPQLYKPAIEECVRIGMTNHVDPVPYYNRYLNAVTFIDQEISKVLGVIEKKGYLKNS
                     IIIITSDHGQEFNDNRQNYWGHTSNFTPIQLHVPLIIHWPGELARRFNYLTSSYDIVP
                     TILQRLFACKNPVSDYSIGYNLLIEGNRASFLLVGSYINMGIFEADRATALETSGRIT
                     ITGMKAEPLDDAVPRVDVITQALDLMRKYYGK"
     gene            1755..2069
                     /locus_tag="JBH85_14835"
     CDS             1755..2069
                     /locus_tag="JBH85_14835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947466.1"
                     /translation="MANQTRENLINKAKNGSESIALIYSPIELHEYIVEIISKDSDHF
                     IHKGKEICHFNSIDEAVSRATELGAKEFFLCADNTYDECGSANSVQHFDYIPIYSKFK
                     RT"
     gene            complement(1953..>2226)
                     /locus_tag="JBH85_14840"
     CDS             complement(1953..>2226)
                     /locus_tag="JBH85_14840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947467.1"
                     /translation="KHVLKIRAEKKLTIQEVATKFRVGKASVIRRLIEFEPKKKCKKL
                     ATKIDAPNSSALKFRINRYIIKVLHRICRTTFIICIICTKKKLFCP"
BASE COUNT          691 a          391 c          371 g          773 t
ORIGIN      
        1 taatttggat tatcagtgtt gttgcggctg ccacaagtct tattttttta tttgttgata
       61 gtcaagtttt ttcaatgttt aagtttcatc ttaataaaac aatattatcg tttattttta
      121 attcagattg gagtgtcatt ttcacttttt ccagatatga actgattttg tcttttttta
      181 tgattgtctt tatactcttt ctggagtcta ttgttgcctg gttggtatgg aaaaaaatag
      241 ttttaaaaga acgtttgaaa attggtaaaa ctatttcatt attttggctt ggtggggcat
      301 taataagtta ttttatattg ctcttatcga tagctcaaaa taataattta tttgctcagc
      361 aaatacctaa tttgcccctt tataatcaac tcattgctta tactatccct gataaaaacg
      421 cggatgatat attacgccgc tacagtgagc accattttac acagcctctt ttccccaatt
      481 atccattgca ttatccctta catcccatgc aatgtaagat gcctgaaaaa ccttataaca
      541 ttatccttat aatggtagat tcacttcgct atgattccct aagggcaaaa tatatgccga
      601 atacggcaca atttgcaaaa agaagttggc aattttctca gcatatgagt gctggaaatg
      661 ccacacaacc aggattgttt tctttatttt attcgattcc cagtaattac tcgacggcag
      721 tcctggagca aaaaaaatca ccagttttaa ttgatttatt attacaacat ggttttcaga
      781 caaaaattat ttggtctggc tctatggctc cactgccatt agatcagact atttataaaa
      841 aaattgccaa tctcaatacc aatggagcgc caatagacga taccggagac aaggacagat
      901 attccaccaa ggaagctatc caatttttaa cagatcctaa aacaaataac ccattctttc
      961 ttcacatttt ttacaatgcg ccacatgact attgtagata tcaaagtttt ccgcagttat
     1021 acaaacccgc aatagaagaa tgtgtacgaa ttggaatgac aaatcatgtt gatccagtac
     1081 cttactacaa tcgttatttg aatgcagtca catttattga ccaggaaatt tcgaaagtat
     1141 taggggttat cgaaaaaaaa ggttatttaa aaaacagcat cattataatt acctctgatc
     1201 atggccaaga atttaatgat aatcgtcaaa attattgggg acataccagt aattttaccc
     1261 ctattcaact acacgttccc ttgattattc attggccagg ggagttagct cgtcgtttta
     1321 attatctcac cagcagctat gatattgtac ctacaatatt acagcgttta tttgcttgca
     1381 aaaatcctgt ttctgactac agcatcgggt ataacttgct aattgagggc aatcgagcct
     1441 catttctatt ggtaggaagt tatattaata tgggaatttt tgaagcagat cgagccacag
     1501 cattagaaac ctccggaaga attacaatta ctggtatgaa ggcagagcct cttgacgatg
     1561 cggtacccag agtggatgtt attacccagg cattggattt gatgcgcaag tattatggga
     1621 aataaaagat tgtctttaaa aataaattgg caattaacct ttttattctc aatttaggcc
     1681 atacagcgga tatctttaaa tttctaggca aaaatatggc tataattata tataatttgc
     1741 ttgggaatta agtaatggca aaccaaacac gtgaaaattt aattaataag gcaaagaacg
     1801 ggtccgaatc tatcgcttta atttattctc caatagaact tcatgaatat attgttgaaa
     1861 ttatttctaa agattcagat cactttatcc ataaaggaaa ggaaatatgt cattttaatt
     1921 cgattgatga agcggtgtct cgtgctaccg aattaggggc aaaagagttt tttctttgtg
     1981 cagataatac atatgatgaa tgtggttctg caaattctgt gcaacacttt gattatatac
     2041 ctatttattc taaatttaag cgcacttgag tttggcgcat caatcttggt tgcgagcttt
     2101 ttgcatttct ttttcggttc aaactctata agccgacgaa tgacactggc ttttcctact
     2161 ctaaattttg tagccacctc ttggatggtc aatttttttt ctgctcttat ttttaataca
     2221 tgtttg
//
LOCUS       DACVWI010000315         2207 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.316, whole genome shotgun sequence.
ACCESSION   DACVWI010000315 DACVWI010000000
VERSION     DACVWI010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.316"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..2186)
                     /gene="vpdC"
                     /locus_tag="JBH85_14845"
     CDS             complement(<1..2186)
                     /gene="vpdC"
                     /locus_tag="JBH85_14845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector VpdC"
                     /protein_id="HAU0947468.1"
                     /translation="MMTPQHVISQLLESDTKYPQNLDLLKKIIISAYLGRLRINGLPP
                     DNKIALGNYLFDDERMIFDFTRLSDSKRALFIEWLLEPHQKDKEHGFLSGVYVNEYRG
                     FTAEVALSWWGILKNWLFNNKSEHWKITDLGLSVNYQLTGIEMCHGKQGILIGFNQFL
                     VPPSGTKYRDPNDSQSEPLGNVKRVFITDKLVDELVGLNYKKLNYESVCKSPHPQSID
                     VTDPEARHKDMYDYRKMQRFNGVRPWYIRLWRWISKLFFGDTYDAKKTSTSDDNLELL
                     YKTKTVKIYQRSKSKEILVTEKRPDITNLVFCGGGAKIFAHVGVWKALNEAGMKPTKF
                     AGSSAGAIMSLMCYLGYTADEISELFKHFKQEHLVQFDIDRNGLSDTHSLKTALDYAI
                     ANKVRQIVNKYKIPYPKGKITFSTLASLREQFPDCGIGKELIVTATNKRSGKTIYLSA
                     NRYPLLEVSEAVKISASFPVLYRDTLLDGEEHNDGGILSNFPTEVFFDDHSTLLESEF
                     GNNLKVLAVQFDNGIERNVIDRIMDKVYRENFVLNWIYSLLTGVSDPASGWERDRLKL
                     RQYALQTIIPETGKVSTTGFNVERQSQEELIQNGYQSTLDYLNVRYTRKNNSYVNKEI
                     MYSTFNSLGDLLAYCCYRGDEQWFNVVNNLIVQSTLPNRTALMKQSLELRKLYFNTSL
                     PSNPEKNKTACNESNTLTFFGNAVCQHHNHSQELENGNHDVLLALYP"
BASE COUNT          682 a          434 c          344 g          747 t
ORIGIN      
        1 ggatagagtg ccagtaagac atcatggttt ccattttcaa gttcctggct gtgattatga
       61 tgctgacaaa ccgcattacc aaaaaaagtt aaagtattgc tttcattaca agctgtttta
      121 ttcttttcag gattagatgg tagagacgta ttaaaataaa gttttctaag ttcaagggat
      181 tgtttcatta aagcagtacg attaggtaag gtagattgca caattagatt attaacaaca
      241 ttaaaccatt gttcatctcc tctgtaacaa cagtaagcaa gcaaatctcc caaagaattg
      301 aaagtagagt acattatttc cttattaaca tagctgttgt tttttctagt atatcttaca
      361 ttaagataat ccagagttga ttgataacca ttttggatta attcctcctg gctctgcctc
      421 tctacattaa atcctgttgt tgatactttc cctgtttcag gaattatagt ttgaagagca
      481 tattgtctta acttaaggcg gtctctttcc catccacttg caggatcact cactccagtc
      541 agtaagctat aaatccagtt aagaacgaaa ttctctcgat aaactttgtc cattattcta
      601 tcaataacat ttctttcaat cccattatca aattgaactg ccaatacttt taaattatta
      661 ccaaattcag actccaacag cgttgagtgg tcatcaaaaa aaacttcggt tggaaaatta
      721 cttaatattc caccgtcatt atgctcttca ccatccagca gagtatctct atacaaaact
      781 ggaaagctcg cagaaatttt aactgcttca ctgacctcca ataatgggta acgatttgct
      841 gataaataaa tagtttttcc tgagcgttta tttgttgctg taacaattaa ttctttgcct
      901 attccacaat ctggaaattg ctctcttaga gacgctaaag tactaaaagt tatttttccc
      961 ttaggatatg gaattttata tttatttact atttgcctta ctttatttgc gatagcataa
     1021 tccagcgcgg tctttaagga atgagtatca gataatccat ttctgtctat atcaaattga
     1081 actaaatgct cttgtttgaa atgcttgaaa agttcactaa tttcatcagc agtataaccc
     1141 aggtagcaca tcaaagacat gattgcaccg gcagagcttc ctgcaaattt ggttggcttc
     1201 attcctgctt cattgagagc cttccaaacc cccacgtgag caaaaatttt tgccccacct
     1261 ccacaaaaaa ccaaattagt aatatcaggt cgcttctctg tgaccaagat ctcttttgat
     1321 ttggagcgct gataaatttt gacagtttta gttttataaa gtaattccaa attgtcgtct
     1381 gaagtgcttg tttttttagc gtcgtatgta tcgccaaaaa atagtttaga tatccatctc
     1441 caaagtctga tataccaagg cctcacacca ttgaaacgtt gcatttttct gtagtcatac
     1501 atgtctttat gacgagcttc tggatcagtt acatcaatag attgaggatg agggctttta
     1561 cagacagact cataattaag ttttttataa ttgagcccaa caagttcatc aaccagttta
     1621 tcagtaatga atactctttt aacattacct aatggctcac tttggctatc attcggatct
     1681 ctgtattttg tacctgaagg tggtactaaa aactggttaa atccaattaa gataccctgc
     1741 tttccatgac acatttcaat accagtcagc tgataattga cagaaagtcc caaatccgtt
     1801 attttccaat gctcagattt attattaaat aaccagtttt ttaagatacc ccaccaactt
     1861 aaagcaacct ccgcagtgaa acctcgatat tcattcacgt aaacgccact taaaaaacca
     1921 tgctctttat ctttttgatg aggctcaagc aaccattcaa taaataaagc tctttttgaa
     1981 tcactcaatc gagtgaaatc aaaaatcata cgttcatcat caaataaata atttccaagt
     2041 gcaatcttgt tatctggagg taatccatta attctgaggc gtcccagata agctgatatg
     2101 attatttttt ttaataaatc taaattctga gggtatttgg tatcagattc cagcagttga
     2161 cttatgacgt gctgtggggt catcagtaaa tccttacgtc tgggtag
//
LOCUS       DACVWI010000316         2195 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.317, whole genome shotgun sequence.
ACCESSION   DACVWI010000316 DACVWI010000000
VERSION     DACVWI010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.317"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(130..807)
                     /locus_tag="JBH85_14850"
     CDS             complement(130..807)
                     /locus_tag="JBH85_14850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0947469.1"
                     /translation="MSIREKIGKRIHEARKAKGLTRQALADLTDDIKPSRINNWEHGT
                     RMPGPEEITQLAQALEVSPSFLMGLSDERDGDFGINSRVGSLIPLLDHKQAGDPKYHI
                     QRVKEEPYAEKITFLPVNQDIANQLDEYAFALKMLDDSMSPELRINDIQIVDPSISPN
                     PGDFVVVKISGKDDVIICQYKKISYTSSEFELLTLNDNWPNITFNESEQVEIVGTVIQ
                     NIRTYRR"
     gene            1021..1227
                     /locus_tag="JBH85_14855"
     CDS             1021..1227
                     /locus_tag="JBH85_14855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HAU0947470.1"
                     /translation="MEHTKNKPFKQKLLFIKDVEQIIGRNRLTLRRWWSAGKFPTPTK
                     LNGTVLVWQTDVIEQWINLHTESK"
     gene            1265..1663
                     /locus_tag="JBH85_14860"
     CDS             1265..1663
                     /locus_tag="JBH85_14860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein LvrA"
                     /protein_id="HAU0947471.1"
                     /translation="MHFLFVNAQELEALMELPYIQRLTYLMGIRPYMDRETHIVGIKR
                     RISYQSLREALYVAPIAGVKTGSPSQQQVKRAVKSLERAGLIEIKSTTRHLILKCLLA
                     EGHQSFPKQADPRPNPKAAINPTHFWPFKI"
BASE COUNT          701 a          418 c          374 g          702 t
ORIGIN      
        1 atacctattt tgattaatgt ttccggaata gtggtttatg ctaatatgag tcaaattcct
       61 cttccatcct gagtaatacc cagctttccc ctggaatttc accccatctt aaaaatctta
      121 ttggaaattc taccgacgat acgtccgaat attttgaatc accgtcccca ctatctcgac
      181 ttgctcactt tcgttaaaag taatattggg ccagttatca ttcaaggtca gtagttcaaa
      241 ctcagatgaa gtataggata tctttttata ctgacaaata atgacatcat ctttgccact
      301 tattttgacg acaacgaaat caccaggatt gggggatata gaagggtcaa ctatttgtat
      361 gtcattgatt cttaattccg ggctcatgct gtcatcaagc attttcaaag caaaagcata
      421 ttcatctaat tgatttgcta tgtcttgatt aacaggtaaa aaagttattt tttcagcgta
      481 aggttcttct ttaactcttt gaatatgata tttcggatca ccagcttgtt tgtggtcgag
      541 caatggtatt aatgacccga ctctagaatt tatgccaaaa tcaccatctc gttcatcgga
      601 taaccccatg agaaaagatg gggatacttc taaagcttgc gccaactgcg taatttcttc
      661 gggtcccggc atccttgtgc cgtgttccca attatttatt cgagagggtt ttatatcatc
      721 ggttaaatca gctaaagcct gcctggttaa gcctttagct ttacgcgctt catgaatacg
      781 tttcccaatc ttttctctaa tgctcattac aataaattca ccaaaattga aaaaagctct
      841 gattgatact tgattgttac acgaaaggtg ttatattcaa taatatttgc acgtaacgtg
      901 taatttaatg tgttttacct cttaaactta acacaaaatg agtaagttaa cgagcgggaa
      961 tttggaaatg actgcataca tacaacaaaa cgtttgcagt actgattatg gagttactat
     1021 atggaacata caaaaaataa acccttcaaa caaaaattac tctttatcaa agacgtagag
     1081 caaattattg gccggaatag actgacatta agaagatggt ggtctgctgg taagtttcct
     1141 acaccaacga aacttaatgg tactgtatta gtatggcaaa cagatgttat cgaacagtgg
     1201 attaatctgc atactgaatc aaaataaata catctatcaa aaaaattctt aggaagagtg
     1261 aataatgcat tttttatttg taaatgctca ggaacttgaa gcgcttatgg aattacccta
     1321 tattcaacgt ttaacctatc tcatgggcat tcgcccctat atggacagag aaacgcatat
     1381 agttgggata aagcgtagaa tcagttatca atcactacga gaggcgttat acgttgcccc
     1441 tattgcaggt gtaaaaacag gcagcccaag ccagcaacag gtaaagcgag cagttaaatc
     1501 gttagaacgt gctggtttga ttgaaatcaa atccacaaca cggcatctta ttttaaaatg
     1561 ccttttagcc gaagggcatc aatcttttcc aaaacaggcc gaccctaggc cgaaccctaa
     1621 agccgccata aacccgacac acttttggcc ttttaaaata tagggatttt ctaatatgca
     1681 ttgtaaaacc catcatgcct ataagcgttt aggccgaccc acctcagaac tcagaattat
     1741 tatttattta tatatatatt tttgtttatt tgaaaaaatt ttctttaaaa gtgatccaca
     1801 gaaaaattta taaatggtgc tttaatttta gtgagtataa gtgactacac agatcaacag
     1861 cgtttaggaa aaattcggtg cagcaattgc aatgtgtttt atgatctaga agaattaatt
     1921 accctaccat ttaaaggcgt cactccacta ttaacccatt aataaaagtt tctatgctct
     1981 tcacttcatg atgaactcat gatgaataag tgatgcagaa gttatattta tcccagatag
     2041 acactagatc ttccgtgcat cacctaattc atcacacatt caccgctatt ttgagctgtg
     2101 tactaccagt tttttggtaa aatattatta ttaatcatat ggatatggcg catatttata
     2161 tcatgcgaaa ggtgtgtgtg ttatcttaac attta
//
LOCUS       DACVWI010000317         2193 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.318, whole genome shotgun sequence.
ACCESSION   DACVWI010000317 DACVWI010000000
VERSION     DACVWI010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.318"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..411
                     /locus_tag="JBH85_14865"
     CDS             <1..411
                     /locus_tag="JBH85_14865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase"
                     /protein_id="HAU0947472.1"
                     /translation="NIGIAVDTPNGLVVPVIKNVDKLSVIDIAKEMSRLSTKAREKGL
                     TPIDMSGGCFTISSLGGIGGTAFTPIVNSPEVAILGLSRSIIKPIYDNKEFKPRLMLP
                     ISLSYDHRVIDGAEAARFTRFLCDCLGDIRRVLL"
     gene            500..1924
                     /gene="lpdA"
                     /locus_tag="JBH85_14870"
     CDS             500..1924
                     /gene="lpdA"
                     /locus_tag="JBH85_14870"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HAU0947473.1"
                     /translation="MANKIKTDVVVLGSGPGGYTAAFRAADLDKKVVLVERFDSLGGV
                     CLNVGCIPSKALLHIAKVVDEAHEMSEQGVAFGKPKFDNKKLVAWKNSVVAKLTGGLK
                     ALAKQRKVEVITGTGKFSGTHQILVETKEGTVEIEFDNAIIAVGSESIKLPFIPEDKR
                     IFSSTGALELADIKGDLLVLGGGIIGLEMATVYSSLGVNVTVVEFMDQLIPNADADLV
                     NILQKRMTKKGVKFLLKTKVTAVEAKKDGIYVSMEGEHATDKPLCFQQVLVSVGRKPN
                     GGAINAEKAGIKVDERGFIPVDNQLRTNVPHIFAIGDVNGQPMLAHKAIPEGKVAAEV
                     IAGKKHYFEPKCIPSVAYTDPELAWAGLTEKEAKEKGINYEKASFPWAASGRALSMGR
                     EEGMTKLLFCPETNRILGAGIVGVNAGDLIAETALAIEMCCDVEDIALTIHPHPTLSE
                     TIAQSAEAFEGTITDLYLPKKKKK"
BASE COUNT          724 a          361 c          484 g          624 t
ORIGIN      
        1 aatataggta tagcagtaga tacacctaac ggtctggtgg ttcctgtaat aaagaatgtt
       61 gataaattga gtgtgattga tattgcaaag gaaatgtcca gactcagtac gaaagctaga
      121 gaaaagggat taacacctat tgatatgtca ggcggttgtt ttacaatttc cagccttggt
      181 ggtataggcg gaacggcatt tactcctatt gtaaatagcc cggaagttgc aattttgggc
      241 ttatcaagat caataataaa acccatatac gataataaag agtttaaacc cagattgatg
      301 ttgcctattt cactttctta cgatcataga gtaatcgacg gcgctgaggc agcccggttt
      361 actcgctttc tttgtgattg tttaggtgat attagaagag ttttactctg acatataaag
      421 gaatagagct attggtattt ccttgttctg aatgaaatgc caataacccc agaaaacata
      481 ttttttgatg aggcttctta tggctaataa aattaagaca gatgtagtgg tattaggtag
      541 tggaccaggc ggatacacag ccgctttcag ggctgccgac ttggataaaa aggtggtttt
      601 ggtcgagcgt tttgactcac taggtggcgt ttgtttaaat gttggttgca ttccctcaaa
      661 agcattattg catattgcta aagtagtaga tgaagcccat gaaatgtcag agcaaggtgt
      721 agcatttggt aaacctaaat tcgacaataa aaaattggtt gcctggaaaa actctgtcgt
      781 tgcaaagttg accgggggac taaaagctct tgccaaacaa agaaaagtag aagtaattac
      841 tgggacaggt aagttttcag gtacccatca aattcttgtt gaaacgaaag aagggactgt
      901 agaaattgaa tttgataatg ccattattgc agtaggctca gaatccatta aattaccatt
      961 tataccagaa gataaacgaa tatttagctc tacaggggca ttagaactcg ctgatatcaa
     1021 aggtgactta cttgtattgg gtggtggtat tattggcttg gaaatggcaa ctgtctactc
     1081 ctcgctggga gttaatgtaa cagttgttga atttatggac caattaattc cgaatgctga
     1141 tgccgacttg gtcaatatac tgcaaaaacg aatgactaaa aagggtgtca aatttctatt
     1201 aaaaacgaaa gtaactgcag ttgaagccaa aaaagatggt atttatgttt caatggaagg
     1261 agaacatgca actgataagc ctctttgctt tcagcaagta cttgtttcag taggcaggaa
     1321 acctaacggt ggagcaatca acgctgaaaa agcagggatc aaagtagatg aacgtggctt
     1381 tattccagtt gataatcaat taagaacgaa tgttcctcat atttttgcta ttggcgatgt
     1441 caatgggcaa ccaatgctcg cacataaagc aatccctgaa gggaaagttg cagcagaagt
     1501 cattgcaggg aaaaaacatt attttgagcc aaaatgtata cctagtgttg cttatacaga
     1561 tccagaatta gcttgggctg gtctaacaga aaaagaagca aaagagaaag gaataaacta
     1621 tgagaaagcc tcctttccat gggctgctag cggtcgtgca ctcagcatgg ggcgagaaga
     1681 gggaatgacc aaattactat tctgcccaga aactaaccgt atcctgggag caggtattgt
     1741 tggggttaat gccggcgatt taattgcaga aactgcctta gccattgaaa tgtgttgtga
     1801 tgttgaagac atcgctctta ctattcatcc tcacccgact ctatcagaaa ccatagctca
     1861 gtcagcagaa gcatttgaag gcactataac ggatctgtat ttgcctaaaa agaagaaaaa
     1921 ataataatta caggtagcca attatacctc attgtatttc ctttgctcat aaaagcaaag
     1981 ggatgcttat tatatgtata taattatata tagacctctt gcatgggctg attattttat
     2041 tttggacaag atacaaactt tttgcggggt agagtttaca taaatcccac aaaaatatat
     2101 gcagcacagc aaaaaaatga aaggacagtc atgcaaaggg cctaaataaa agactaaaga
     2161 attattaagt gcagtatttt ggattagtaa tgt
//
LOCUS       DACVWI010000318         2192 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.319, whole genome shotgun sequence.
ACCESSION   DACVWI010000318 DACVWI010000000
VERSION     DACVWI010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.319"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1916
                     /gene="sdjA"
                     /locus_tag="JBH85_14875"
     CDS             <1..1916
                     /gene="sdjA"
                     /locus_tag="JBH85_14875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdjA"
                     /protein_id="HAU0947474.1"
                     /translation="HFNFIRAFILDYNKKSLTHNQRAFMQQFRDSAAFFFPDQVYLAW
                     LTQSYEPGSILNPMYRESRSTHYYHANITDNLLLRTRPKQVNFGPQHFFQKGKGPVKN
                     TYRFNINDGKLMRIQGRTLLFSTNKGNEVIAVKVQKKGEPQSALSNEFQMADYLLKHQ
                     RRLNLQSQLPTPLSQYSINRTEILEKCSKSPDFEKFKNLISDAKSLEIYVYKATPSYF
                     TYLHDKQQSFSQLTSSVQKNVHDLFVLLREGIVFPYLADMFHTHIDESKRSDKGRYQT
                     LVELLSALQSQMGRLDKWQKAVEFVNLRASGIADLGDNLPLTSFLTVSDWTKHYHAEL
                     LTGVYHPSFLFLDKSSGSVRSLFNSRRKIFGNYLYLNIIAEYLLVIQLVIGCYGDKVT
                     RKMNSKSKAKVWEHLAELMFSSCAEAVNLITGMPKSRALAFLKQRANVRKHTQQTSFW
                     MTPDYSNLDRLSVQSQQSTLYPGESDYEINSDLISGVGLSLDGINQDLGDYNQASPLR
                     ELEKLLYATVTLIEGTQQLDKQFFQQLDETEKMILSAAGVDKCYQAVAKLLDLARPGC
                     QMQRRLAFTYYEMIKRIYPCSNPADVRFELVAKEEAIIKIQRFWREHKKENQSLEKGF
                     DFDRNTSSSQSPL"
BASE COUNT          689 a          394 c          438 g          671 t
ORIGIN      
        1 ttcattttaa ttttataaga gcttttatac tggattacaa taaaaaatca ttgactcata
       61 atcaacgtgc gtttatgcag cagtttaggg attctgctgc ttttttcttt cctgatcagg
      121 tttaccttgc ttggcttacc caatcctatg aaccaggctc tatcttgaat cctatgtaca
      181 gggagagcag atcaacgcat tattatcacg cgaacattac tgataatctc ttgttaagaa
      241 cacgccccaa acaggtcaat tttggtcctc aacatttttt ccaaaaagga aaaggccccg
      301 tcaagaatac ttatcgtttc aatatcaatg acggaaaatt aatgcgcata cagggaagaa
      361 cattactttt tagcacgaat aaaggcaatg aagtgattgc tgtaaaggtg caaaaaaaag
      421 gggaaccgca atctgcttta agtaatgaat ttcaaatggc agattatttg ttgaaacatc
      481 aacgccgttt gaatttgcaa agtcaattac ctacccctct cagccaatat tcaattaatc
      541 gaacagagat tctcgaaaaa tgcagtaaat cacctgattt tgagaagttc aagaatttga
      601 taagtgatgc aaaaagcctt gaaatttatg tttataaagc aacaccttct tattttactt
      661 atctgcatga taagcagcag agctttagtc aactcacttc atcagtgcag aaaaatgtac
      721 atgatctttt cgtgctcctg agagagggca tagtctttcc ttatctggca gatatgtttc
      781 acacccatat tgatgagagt aaaaggagcg ataagggtcg atatcagacg ttagttgagc
      841 ttttaagtgc tttgcaatca caaatgggcc gtcttgataa atggcaaaaa gcagtcgaat
      901 ttgttaactt acgagccagc ggtatcgctg atttgggtga caatcttccg ttgaccagct
      961 tcttaactgt ttctgactgg acgaagcatt atcatgcgga attgctaacg ggcgtttacc
     1021 atccatcctt tctattcctc gataaatcca gtggctcggt tcgctccttg tttaacagcc
     1081 ggcgcaaaat attcggcaat tatttgtatc tgaatatcat cgctgagtat ctattagtta
     1141 ttcaattggt aattggctgt tatggcgata aagtgacccg taaaatgaat agtaaaagca
     1201 aagctaaggt ttgggagcat ttagccgaat tgatgttttc cagttgtgct gaagcggtta
     1261 atttgataac tggtatgccc aaatccaggg cacttgcttt tttaaagcaa agagccaatg
     1321 taagaaaaca tactcaacaa acgtcgtttt ggatgactcc tgattattcg aatctggata
     1381 ggctgagtgt gcagtctcaa caatccactt tgtaccccgg cgaatcagat tatgaaataa
     1441 acagtgattt aatttcgggg gtcggtctga gtcttgatgg catcaatcag gatttgggtg
     1501 attataacca ggcaagccct ttaagggagc tagagaaatt attgtatgct acagtgacct
     1561 taatagaggg aacccagcaa ctggataagc aattttttca acagttggat gaaactgaga
     1621 aaatgatttt gagtgctgct ggagttgata aatgctatca agctgtcgca aaactcctgg
     1681 atcttgctcg gcctggttgt caaatgcagc gaagattggc ttttacttat tatgaaatga
     1741 tcaaaagaat atatccctgc tcaaatcccg cagatgtgag atttgaactt gttgcaaaag
     1801 aagaggcgat tataaaaatt cagcgttttt ggcgagagca taaaaaagaa aaccaatcgc
     1861 ttgaaaaagg gtttgatttt gacaggaaca ctagttcatc gcagtcgcct ttatgaaagg
     1921 gtcatttcaa ttgtaagaga tcatccccaa gatcgttaga ggatatttca acatcagggc
     1981 actgacctgt tacttttaat tttggaaaat taaaagtact cataagctta atgagatttt
     2041 tcttatttcc gctaacaatt ggattttatg ctatttaatt aagacaagat tttattcttc
     2101 atccagggaa ttatggtgga agtttaaact caatatcaga tatgattacg ctttgaattg
     2161 acaaaaacaa gacaaaaaac gatacttttg ct
//
LOCUS       DACVWI010000319         2159 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.320, whole genome shotgun sequence.
ACCESSION   DACVWI010000319 DACVWI010000000
VERSION     DACVWI010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.320"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..975)
                     /locus_tag="JBH85_14880"
     CDS             complement(<1..975)
                     /locus_tag="JBH85_14880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0947475.1"
                     /translation="MSWSIRIENLSKQYRIGSTTTTAAELINEKLRKFLLLLDFKKRN
                     RFSSDKPLPSSIAQEGRTVVDASQISPEYPNHFWALRDINLEIEAGERLGIVGQNGCG
                     KSTLLKILSRIVSPTEGLFRFRGRLISLLEIGTGFHGELTGRENIFLNGTIMGMKTHE
                     IKNRLNQIIEFSELGSMIDTPVKRYSSGMYIRLAFAVAAHLESEILIVDEVLAVGDAA
                     FQRKCTEKMLDLANQGRTLLFVSHDMETVNRICNRAIRMSHGRIVGDSKFDTSAASKS
                     SVMDITRDYLRSGAKYKSEQVWPSDKPMIFLNSLKLNRVRLIDYDNKVR"
     gene            complement(972..1823)
                     /locus_tag="JBH85_14885"
     CDS             complement(972..1823)
                     /locus_tag="JBH85_14885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HAU0947476.1"
                     /translation="MTSISSKTQTFKETVVYGVDKFRLLAVLRNIWDYRLLLWIFCKR
                     DLKGRYSQTILGLGWVILTPLITVGVFVIVFGIMIKVPTDGLPTVMFYLVAVIPWYSF
                     LNVLNPSIQMIEGNASLITKVYFPRALIGGAYAMGAAVDFLMAYVFLITPFAIYYGLW
                     SIKLLIIMPFLLISTLMIGLGIGLVLAPINAKYRDIKHFMPLALQLFYYSTPAIYPVS
                     AVPVWAKPWYAVNPLSLVITSYREVLMGHWPSPTIIMTLSGMAIITFLVGLVAFHHME
                     HKVVDIL"
     gene            complement(1789..>2159)
                     /locus_tag="JBH85_14890"
     CDS             complement(1789..>2159)
                     /locus_tag="JBH85_14890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947477.1"
                     /translation="ITCCDLFVACVSSTLRWAIAKGIPAINYDCYQYGYTDFDAKGVF
                     NVNDFKSFSAVLEELTRDRQKYEGAKQDQQECASEWGILDGNSQKRIVNLINKLVQSE
                     SVIDIENKNYDLNILKNSDI"
BASE COUNT          713 a          462 c          355 g          629 t
ORIGIN      
        1 acgaacttta ttgtcgtaat ctatcaatct aactcggtta agcttaaggg aatttaaaaa
       61 tatcattggc ttatcactag gccaaacctg ttccgattta tatttcgctc ctgagcggag
      121 atagtcgcga gtgatatcca tgactgaact tttgcttgct gcacttgtat caaatttact
      181 gtcaccgaca attctgccat gcgacattcg tatggctcta ttacaaattc gattcacggt
      241 ttccatatcg tgactgacaa ataataaagt tcttccctga tttgctaaat ccagcatttt
      301 ttccgtacac ttgcgttgaa atgctgcatc acctaccgct aacacttcat caactataag
      361 gatttcagac tccaaatgag cagctacagc aaatgccaag cgtatataca ttccggaaga
      421 gtagcgcttg acaggagtat ctatcattga ccccaattca gaaaattcaa taatttgatt
      481 gagtcgattt ttaatttcat gggttttcat tcccataata gtgccattta aaaaaatatt
      541 ttcacgtcca gtcagttcac catgaaatcc tgtaccgatt tccaacaaac tgattaagcg
      601 ccccctaaat cggaataacc cttcggtagg agaaacaatg cgtgatagaa tttttaataa
      661 tgtgctctta ccgcaaccat tttgtcctac tataccaagc cgctcccctg cctcgatttc
      721 aagattaata tcccgcaaag cccagaaatg attgggatat tccgggctaa tttgacttgc
      781 atcgactaca gttctacctt cttgtgcaat ggatgaaggc agtggcttat cggatgaaaa
      841 tcgattcctt tttttaaaat ccagtaataa aagaaatttt ctcaattttt cattaatcag
      901 ctctgctgcg gttgtagtag tactaccaat ccgatattgt ttggaaaggt tttcaatacg
      961 aatagaccaa ctcataaaat atcaactacc ttatgctcca tgtgatgaaa tgcaacaagc
     1021 cccacaagga aagttataat tgccatacca gataatgtca ttattatagt aggtgatggc
     1081 caatgcccca ttaacacctc tcgataactg gtgataacaa gagataatgg attaacagca
     1141 taccatggtt tagcccacac aggcacagca gaaacagggt aaatcgctgg agtggagtaa
     1201 taaaataact gcaaagccag aggcataaaa tgtttaatat ccctatattt tgcattgata
     1261 ggtgctaaaa ccaaaccaat acctaatcca atcattaagg tagatatcag caggaatggc
     1321 ataataatta ataacttgat agaccaaagg ccataataaa ttgcaaaggg ggttatcaaa
     1381 aacacataag ccatcagaaa atcaaccgca gctcccatag cataggcacc gcctatcaac
     1441 gctcttggaa aatagacctt tgttattaac gaagcatttc cctcaatcat ttgtatggaa
     1501 ggattgagaa catttaaaaa ggaataccaa gggataaccg caaccaaata gaacatgaca
     1561 gtaggcagcc catcggtagg tacctttatc atgatgccaa aaacaatgac aaacacccca
     1621 actgtaatca gaggagttaa aataacccaa cccaatccca agatggtttg actgtaacgc
     1681 cctttgagat ctcgtttaca aaaaatccat aaaagcaagc ggtaatccca tatatttctt
     1741 aaaacagcta aaagcctaaa cttatcaact ccatagacta ctgtttcttt aaatgtctga
     1801 gtttttgagg atattgaggt cataattttt gttttctata tcaattacag attccgattg
     1861 aactaactta ttaattaggt tcactattct tttttgggag tttccatcca ggatgcccca
     1921 ttcactcgca cattcttgtt ggtcctgttt ggcgccctca tatttctgcc tatcacgcgt
     1981 taattcttcc aaaacagcag aaaagctttt aaagtcattc acattaaaaa caccttttgc
     2041 atcaaagtct gtatatccat attgataaca atcataatta atggcaggga ttccttttgc
     2101 aattgcccaa cgtaaagttg atgaaacgca agctacaaat aaatcacaac atgtaataa
//
LOCUS       DACVWI010000320         2151 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.321, whole genome shotgun sequence.
ACCESSION   DACVWI010000320 DACVWI010000000
VERSION     DACVWI010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.321"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..517
                     /locus_tag="JBH85_14895"
     CDS             <1..517
                     /locus_tag="JBH85_14895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HAU0947478.1"
                     /translation="NLLILTYSKKLEYFVPYVQQLDMESNGKSIDVNGRMVDYATGPI
                     VWGGLGNQAQHSYFQLLCQGTHRCVGDFITLKTNDEHEINSMCHYKMKVLSEGIQTIE
                     NPYGYIPGNMPMNHLILSDCSPYTLGALVALYEHKIFVQSVIWNINPFDQPGIESAKS
                     AHREITLSSES"
     gene            630..1547
                     /gene="rfbA"
                     /locus_tag="JBH85_14900"
     CDS             630..1547
                     /gene="rfbA"
                     /locus_tag="JBH85_14900"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HAU0947479.1"
                     /translation="MLFVQRKIESRLDIMKGIILAGGFGTRLYPLTKSISKHMIPVYD
                     KPMIYYAISTLMLANIREILIISTEEHLPLYQNLLSDGSQWGISFAYLVQNEPRGIAE
                     AFILGEKFIGNDSVCLVLGDNIHQGRGFSELLQNAKSKLNGATVFAYYVDKPQAYGVV
                     EFNEKQQVLSIVEKPAQPKSNYAVTGLYFYDNQVIEIAKSLKPSGRGELEITDINQFY
                     LYENKLDVQILGRGFVWLDMGTPETLLSASNYICTIEQRQGLKIGCPEEIAWRMKFIS
                     DDELLCRARELNKSSYGQYLAELLNHKRY"
     gene            1568..>2151
                     /locus_tag="JBH85_14905"
     CDS             1568..>2151
                     /locus_tag="JBH85_14905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HAU0947480.1"
                     /translation="MAKILITGATGFIGRSLVPALLSEGHDVRCAVLQLDSTLQAEQI
                     VINNLEVHTDWTDALWNVEIVIHLAARVHIMKEYAISSLDEYCKINSIATKNFAEQAA
                     QNNVKRFIFLSTIKVHGEFSQNSLPVTEDCRTQPEDPYAKSKLYAEQFIQEICQNTRM
                     EFVILRPPLVYGPYVKANFLRILQLVDKKWPLPFG"
BASE COUNT          697 a          333 c          445 g          676 t
ORIGIN      
        1 taatttactt attcttacct attcaaaaaa actggagtac tttgttcctt atgtacaaca
       61 gctggatatg gagagtaatg ggaaatccat tgatgtgaat ggaagaatgg tagattacgc
      121 cactggacct atcgtttggg gtggattagg aaatcaggca cagcatagct attttcaatt
      181 attatgtcag ggtacgcatc gatgtgttgg cgattttatt actttgaaaa ctaatgatga
      241 gcatgagatt aattccatgt gtcattataa aatgaaagtt ttaagtgagg gaattcaaac
      301 aattgaaaat ccttatgggt atattcctgg caatatgcca atgaatcatc tcattttgtc
      361 agattgttct ccttatacat taggggctct ggtggcactc tatgaacata agatttttgt
      421 acaaagtgtg atatggaata ttaacccatt cgatcagccc ggtattgaaa gcgccaagag
      481 tgctcacaga gaaatcacat tgtcaagcga atcataaagg ggcgctcaat gctataaatt
      541 agtttaattg ttaaactaaa ctttatattt tattgacatt atcaacgtat tttaatgtat
      601 tacttcaata aacttgataa tatttaaggc tgttatttgt tcaaagaaaa atagagagta
      661 ggctcgatat aatgaaaggt attatcctgg caggtggttt tggtacaaga ctgtatcctc
      721 tgacaaaatc cattagtaag catatgattc cggtttatga taaaccaatg atttattatg
      781 ccatctctac attaatgttg gctaatatca gggaaatact gattatttca acggaggagc
      841 atcttccgct gtatcaaaat ttattgagtg atggttctca gtggggcatc tcatttgcct
      901 atcttgtgca aaatgaacca aggggaatcg cggaagcatt cattttaggt gaaaaattta
      961 ttggcaatga ttctgtttgc ctggttttgg gggataatat ccaccagggc agaggttttt
     1021 ctgaattatt acaaaatgca aaatcaaaat taaacggtgc aacagttttt gcctattatg
     1081 tcgataaacc tcaggcctat ggtgtggtgg agttcaatga aaaacaacaa gtcctatcca
     1141 tagtggaaaa accagcacag cccaaatcca actacgcagt aactggatta tatttttatg
     1201 ataatcaggt tatagaaatt gccaagagtt taaaaccctc tggaaggggg gagctggaaa
     1261 taactgacat caatcagttt tatttatatg aaaacaaact ggatgtccag attttgggaa
     1321 gaggttttgt ctggctggat atgggtacac cagagaccct gttatcagca agtaactata
     1381 tctgtactat cgaacagcgg caaggtttaa aaattggatg ccctgaagaa atcgcgtggc
     1441 gtatgaagtt tattagtgat gatgagttac tgtgcagggc tagagagctt aataaaagta
     1501 gttacggtca atatcttgca gaactgctta atcataaacg atattaattt tttcaggtta
     1561 taaagtagtg gcaaaaatat taattactgg cgcgacagga tttataggac gaagtttagt
     1621 tcctgccttg ctttctgaag gacatgatgt gcgttgtgct gttttgcagc tggatagtac
     1681 attacaagca gaacaaatag taataaacaa tcttgaggtt cacactgatt ggactgatgc
     1741 tttgtggaat gtggaaatag tcattcattt agctgccaga gttcacataa tgaaagaata
     1801 tgcaatatct tctttagacg aatattgcaa aattaatagt attgctacaa aaaattttgc
     1861 tgagcaggca gctcaaaata atgtaaagcg atttatattt cttagtacca taaaagtaca
     1921 tggcgaattt tcacaaaata gtctgccagt tactgaagat tgtaggactc aacctgaaga
     1981 tccctatgca aaaagtaagc tgtatgctga acaatttata caagaaattt gccagaatac
     2041 ccggatggag tttgttatat taagaccacc gttggtctat ggaccttacg tgaaggctaa
     2101 ttttctcagg atattacaac ttgttgataa aaaatggcct ttaccttttg g
//
LOCUS       DACVWI010000321         2149 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.322, whole genome shotgun sequence.
ACCESSION   DACVWI010000321 DACVWI010000000
VERSION     DACVWI010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.322"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1088
                     /locus_tag="JBH85_14910"
     CDS             <1..1088
                     /locus_tag="JBH85_14910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0947481.1"
                     /translation="QTDKNQSTSIALYNEYEKKNIFRIRYTEQNKNWVLSNTQETDTQ
                     YTSLGLVAIEKLQSINGVSVVVSENNKTIRHNFWYSQTITILIVLICSFILYALIKNM
                     MTKRYSLQGAIKLAIKNEEFYPVYQPLFDCDEERFTGVEVLLRWENEDSQIIMPDFFI
                     AEAEATGLIVPITLQIIEIAFKEFRSLLEERSYFHLAFNISALHFTDSIFFNQFHKLI
                     EKYNISPHQIIFEITERELLDKNDTTFINKMQELRQAGFSLAVDDYGTGHASISYLQH
                     FPFNYLKIDKLFVQAIGSNDIIESLNDAIIQMAKGLNLVTIAEGVETKDQANYLANNG
                     VRLQQGWYYSKGLSIAELTALLKGEKI"
     gene            1085..1558
                     /locus_tag="JBH85_14915"
     CDS             1085..1558
                     /locus_tag="JBH85_14915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947482.1"
                     /translation="MRNYIFYGLLLLIGLSHHGFTAPMMKKGSYWKCVTYDKANKAWT
                     AQNSYRKVAINVAFAACKKESQLPATCKTSISNCEGFINGVSTRPMWRCTAIDITAQP
                     WESNFYSNRDDAALAAQAYCKENSTLPATCYINMVTCANKNEGAHSDGLFSGTNW"
     gene            1512..2135
                     /locus_tag="JBH85_14920"
     CDS             1512..2135
                     /locus_tag="JBH85_14920"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HAU0947483.1"
                     /translation="MKEPTQMVYSVGLTGNIASGKSTVAEFFSELGINVIYADKIAKE
                     LTSKNTPCYQDIISHFGSSVVLNNGELDRKRIRDIIFSNSNERLWLESLLHPVIREKI
                     EEQLIACTSPYCLIEIPLLFNKHHYPYLQKVLLVIAPLESQLDRIVKRDHCTKKQALA
                     ILATQPNLEQRLEAADDVLINESGLSELKAKVNKLHQKYLREAKIKQ"
BASE COUNT          754 a          377 c          365 g          653 t
ORIGIN      
        1 tacaaacaga taaaaatcaa tccacctcta tagccctata taatgaatat gagaaaaaaa
       61 atatctttcg tattcgatat actgagcaaa ataaaaactg ggtattaagc aatacgcaag
      121 aaactgacac acaatatacc tcattaggtc tcgttgctat agaaaaacta caaagcataa
      181 atggtgtttc tgttgttgtt tctgaaaaca ataaaaccat ccgtcataac ttttggtata
      241 gtcaaacaat aaccattctt attgttttga tttgttcctt tattttgtat gcccttataa
      301 aaaatatgat gaccaaacgt tattcattgc aaggcgcaat aaaactagct attaaaaatg
      361 aggaatttta tccggtatat caacctttgt ttgattgtga tgaagaacga ttcacagggg
      421 ttgaagtgtt attgcgatgg gaaaatgaag acagtcaaat cattatgcct gattttttta
      481 ttgctgaagc agaagctacc gggttaattg tgccaattac actgcaaatc atagaaattg
      541 ccttcaaaga atttagatct ctattagaag aacgttctta cttccacctt gcatttaaca
      601 tttctgcact acatttcaca gattcaatat tttttaatca attccataag ctaatagaaa
      661 aatataatat ttcaccacat caaataatct ttgaaattac tgaaagagaa ctcctcgaca
      721 aaaacgacac cacttttatc aataaaatgc aagaactaag gcaagcaggt ttttcacttg
      781 ctgttgatga ttatgggact ggccatgcca gcattagtta tttgcaacat tttccattca
      841 attatttaaa aattgataaa ttatttgttc aagcaattgg ttctaatgat attatcgaat
      901 cattaaatga cgccattata cagatggcaa aaggattaaa cttagttact atagcagaag
      961 gcgtggaaac aaaagaccaa gctaattacc tggcaaataa tggtgttcgt ttacaacaag
     1021 gctggtatta ttccaaaggg ctatccattg ctgaattaac agccttgctt aaaggagaaa
     1081 aaatatgagg aattatattt tttatggttt actactatta attggtttat cccatcatgg
     1141 ctttactgcc ccaatgatga aaaaaggaag ttattggaaa tgtgtaactt atgataaagc
     1201 caacaaagca tggacggcgc aaaactcata ccgaaaggtg gctatcaatg ttgcatttgc
     1261 tgcttgcaaa aaagaaagcc aacttcccgc aacatgtaag acatccatat caaattgtga
     1321 aggatttata aatggagtaa gcaccagacc aatgtggcgc tgcacagcca tcgatattac
     1381 tgctcaacct tgggaaagta atttttactc aaatcgggat gatgccgcct tagctgccca
     1441 ggcctattgt aaagaaaaca gtacactacc tgctacttgt tatattaata tggtaacttg
     1501 tgcaaacaaa aatgaaggag cccactcaga tggtttattc agtgggacta actggtaata
     1561 ttgccagtgg caaaagtaca gtcgcagaat ttttttccga gctgggtata aatgttattt
     1621 atgcagataa aattgccaaa gaattaactt ctaaaaatac accctgctac caggatatta
     1681 tttcacattt tggttcttca gtggttctta ataatggtga gcttgatcgg aaacgtataa
     1741 gagatattat attttctaat tcaaatgagc gcttatggct tgaaagtcta ttacatccag
     1801 tcatccgtga aaaaattgaa gagcaactca ttgcctgcac ttcgccctat tgccttattg
     1861 aaattccttt gttatttaat aaacatcact acccctatct tcaaaaagtt ctattggtta
     1921 ttgctcccct ggaatctcag ctagacagaa ttgttaaaag agatcattgc acaaaaaagc
     1981 aagcattagc tattttagcc acacaaccta atttagagca acgcttggaa gcagcggatg
     2041 atgtgctgat caatgaatct ggattgagtg aattaaaagc taaggtgaat aagcttcatc
     2101 aaaaatatct tagggaagca aaaatcaaac agtaacaata aatttctag
//
LOCUS       DACVWI010000322         2118 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.323, whole genome shotgun sequence.
ACCESSION   DACVWI010000322 DACVWI010000000
VERSION     DACVWI010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.323"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            117..455
                     /gene="rpsF"
                     /locus_tag="JBH85_14925"
     CDS             117..455
                     /gene="rpsF"
                     /locus_tag="JBH85_14925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HAU0947484.1"
                     /translation="MRHYEIMFLVHPDQSEQVPGMVERYEGIITKHNGKIHRKEDLGR
                     RQLAYSINKVHKAHYILMNVECNLDALNEIKNAFKFNDAILRHLITVQKQAITTESVL
                     MKKEKETKVA"
     gene            469..696
                     /gene="rpsR"
                     /locus_tag="JBH85_14930"
     CDS             469..696
                     /gene="rpsR"
                     /locus_tag="JBH85_14930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HAU0947485.1"
                     /translation="MSAYFRRKKMCRFSAEGGNEIDYKDINLLKNYITETGKIVPSRI
                     TGTQTRFQRQLAKAIKHARFIGLLPYCDSHR"
     gene            662..1609
                     /locus_tag="JBH85_14935"
     CDS             662..1609
                     /locus_tag="JBH85_14935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947486.1"
                     /translation="MVYCLIATAIDKMNLAGNFILRQSKATLENKQYAIVCAVVLSIV
                     PFASWLSVALMSLITLRKGEKPGFEVMLPAMIVHSVPLMMFLPLEGALINTLVAYLPC
                     YIAALTLRKTASWSNVFGAFLIQAFLVFLSIEILIPDFVSDQFNHFKVLLSQFQDYKQ
                     LVESSTDGLNNLSLAQLFFGIQILSVIASALISLMFARTIQAKLFMPGGFKQEILEFR
                     SGRFSFLMLIIVSVASYFEVPVAISTLPLLLAYFFLSGFSLAYYILARKWQVRVVVLL
                     FLLILLKPFFVLFAYIVFGSLDSLFNFRLYLPARVREST"
     gene            1622..2071
                     /gene="rplI"
                     /locus_tag="JBH85_14940"
     CDS             1622..2071
                     /gene="rplI"
                     /locus_tag="JBH85_14940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HAU0947487.1"
                     /translation="MEVILLEKVRNLGNLGDKVHVKSGYGRNYLIPQNKAVFATEQNI
                     ELFEKRRAELEKKAQQALANAEQRAAKLNDTTIVISAMASDEGKLYGSVGVNEIKDAL
                     IEKQIEISKREIVMPEGPLHSIGNYVVEVHVHSDVVANLQVEIIPAK"
BASE COUNT          689 a          327 c          395 g          707 t
ORIGIN      
        1 ttttaaatcg caatgagatt gtaaggacta aataaaaaag ttataattgg cagcttttta
       61 aaacccttgc cttaccagta ctcaatgctg gaaggcttta tccataagga gaattcatga
      121 gacattatga aattatgttt ctagtacatc cagatcaaag cgaacaagta cctggtatgg
      181 ttgagcgcta tgaagggatt attaccaaac ataacggcaa aatacatcgt aaagaagatt
      241 taggtcgacg ccagctggca tattcaataa ataaggttca taaagcacat tatatcttaa
      301 tgaacgtaga atgtaatctt gacgcactta atgaaatcaa gaatgcattc aagtttaatg
      361 atgctatttt aagacactta atcactgttc aaaaacaagc gattactaca gaatctgtct
      421 taatgaagaa agaaaaagaa actaaagtcg cttaagagga gaacatctat gtcagcttat
      481 tttcgtagaa aaaaaatgtg ccgctttagt gctgaaggtg gtaatgaaat agattataaa
      541 gacatcaatc tattaaaaaa ttatattact gaaactggta aaattgtacc aagccgtatt
      601 actggtactc aaactcgttt ccaaagacaa ttagccaagg caattaaaca cgccagattt
      661 attggtttat tgccttattg cgacagccat agataaaatg aatcttgcag gtaattttat
      721 actcagacaa agtaaagcaa ctcttgaaaa caaacaatat gctattgttt gtgcggttgt
      781 tctttcaata gtcccattcg cctcttggct atcggtggct ttaatgagtt taattacttt
      841 gagaaaaggt gaaaaacctg gatttgaagt catgttacct gcgatgattg ttcattctgt
      901 gcctttaatg atgtttttac ctctggaagg ggcattgatc aatacattgg ttgcttattt
      961 gccttgctat atcgctgctt tgactttacg caaaacagcc agctggtcaa atgtatttgg
     1021 agcttttcta attcaagcat tccttgtatt tctgtccatt gaaatattga tacctgactt
     1081 cgtaagtgat caatttaatc attttaaagt gctattgtct caatttcagg attacaaaca
     1141 gttggtagaa agcagtacag atggattgaa taatttaagt ttggctcagt tattttttgg
     1201 tatccagata ttaagtgtga ttgcttcagc cttaatctca ctaatgtttg cccgaactat
     1261 acaagctaag cttttcatgc ccggtggttt taaacaggaa atattagaat ttcgtagtgg
     1321 cagattttca tttttgatgt taattattgt gtctgttgcc tcttattttg aggtaccagt
     1381 ggctattagc actttaccac tacttcttgc atatttcttt ttatcgggtt tttctttggc
     1441 ctattatatt ttagccagaa agtggcaagt tagagtggtg gttcttttat ttctattgat
     1501 cttgttaaaa ccattctttg tcttatttgc ctatattgta tttggctcgc tagatagttt
     1561 atttaatttt cgattatatc tacctgcaag ggtgagagaa tcaacgtaag gggttattaa
     1621 gatggaagta atcttattag aaaaagtacg taatctggga aatctaggtg ataaagtaca
     1681 cgttaaatca ggttatggac gtaattattt gataccacaa aataaggccg tctttgcaac
     1741 agaacaaaat attgaattat ttgaaaaacg tcgtgctgaa ctagagaaaa aagcgcaaca
     1801 ggctttggct aatgcagaac aacgtgctgc taaattgaac gataccacga tagttattag
     1861 tgctatggct agtgacgaag gtaaattgta tggttcagtc ggagttaatg aaattaaaga
     1921 cgcattgata gaaaaacaaa ttgaaatcag caagcgtgaa attgttatgc ctgaaggccc
     1981 tctacattct ataggtaatt atgttgttga agtacatgta catagtgatg tagtagctaa
     2041 tcttcaagtt gaaattatcc ctgctaaata atttgtttga tatcgaccta aaaatattca
     2101 aatcaacaat atttatat
//
LOCUS       DACVWI010000323         2097 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.324, whole genome shotgun sequence.
ACCESSION   DACVWI010000323 DACVWI010000000
VERSION     DACVWI010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.324"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..780
                     /locus_tag="JBH85_14945"
     CDS             <1..780
                     /locus_tag="JBH85_14945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HAU0947488.1"
                     /translation="NIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLA
                     ETAFIIKDDQDFHIRWFTPNGEINLSGHATLAAGFALLESNKGPSNSIVFHHSSGQIS
                     VEKRKEKFVLNFPRIGYKKTLSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRNLQ
                     IDLFALAKLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLN
                     KNSLYAIQGLHRKGELYCELERNRVLISGHCRWYLRGHLVI"
     gene            986..>2097
                     /gene="prpC"
                     /locus_tag="JBH85_14950"
     CDS             986..>2097
                     /gene="prpC"
                     /locus_tag="JBH85_14950"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HAU0947489.1"
                     /translation="MSSKSGGLAGVVAGQSAIATVGLAGKGLNYRGYSINDLAEYASF
                     EEVAYLLHYGELPTQKELDVYIKKLVNLRHIPDVLKTVLKLIPKNTHPMDVLRTACSF
                     LGTIEPEENFKQQYEIADRLLALFPGIMCYWYTYHFKNKEISGLSEEDTTGGHFLALL
                     HGRKPSKIETDMMNVSLILYAEHEFNASTFAARVTAATLADFYSAITSAIGTLRGPLH
                     GGANEAAMGLIERFKTPDEAAIGIKQMLASKELIMGFGHRVYTTCDPRSDIIKKWSFR
                     LGEEKGNLLLYHISERIEEIMWQEKKLFPNLDFYSASAYHYCDIPTHLFTPIFVMSRI
                     TGWSAHVFEQRANNKLIRPTSEYIGPDSRPFPAIETR"
BASE COUNT          695 a          380 c          416 g          606 t
ORIGIN      
        1 aatattgagt tttatcaaat agatgctttt acggacaaag tcttccatgg taatccggct
       61 gcggtttgta ttctcgatga ttggttaaat gatgagctat taaaagccat tgctgcgcaa
      121 aataatttgg cagaaaccgc ttttattata aaagatgatc aagattttca tattcgctgg
      181 tttactccta atggggaaat taatctatca ggacatgcaa ctttggcagc agggtttgct
      241 ttacttgagt caaataaagg acctagtaat tctattgttt ttcaccactc cagtggacag
      301 atttcggtag aaaagagaaa ggaaaagttt gttctgaatt ttccaagaat aggttataag
      361 aaaactcttt caccagaccc aattgtatca ctattggatc aacctgctat agaagtattt
      421 gaaacagacc ttgattatct agttttactt gaacatgagt cacagattcg aaatttacaa
      481 atcgatttat ttgctttagc aaaactcccc aaaagaggaa tcattgtgac ctcaacaaca
      541 acagaagccg atttctattc ccgatgtttt tatccaaaac acagcattgc agaagatcct
      601 gttaccggct cagcacattg catattagct cctttttggg cagaaaaact caataagaac
      661 agcctatatg ctatccaggg attacacaga aaaggggagt tatattgtga gctcgagagg
      721 aatagggtat tgatttccgg ccattgtcga tggtatctac gcgggcattt agtaatttaa
      781 taaaatcgat tgagatgcat tcatcattga agcataatat aaaacccatt taggagccaa
      841 tggagcatgc cattccaaaa ggaattctct tcaggagaat aaggtaaaat agtcaaccgc
      901 ttcaaagttc agtaataata aaaacatgcg cagcaatttt gactgcacta taaataaaaa
      961 ctagaccaac tgatggagga aaaaaatgag tagcaaaagt ggaggtttag ccggtgtagt
     1021 tgctggtcaa tcagcaattg ccacagttgg actggcaggc aaaggattaa attatagagg
     1081 ctattcaata aatgatctgg ctgaatatgc aagttttgag gaagttgctt atctgcttca
     1141 ttatggtgaa cttcctaccc aaaaggaact tgatgtatac ataaaaaagc tggttaacct
     1201 aagacatata cctgatgtgc ttaaaacggt tttgaagctt atacctaaaa atactcatcc
     1261 aatggatgta ctgcgaacag catgttcttt tttaggcact atcgaacctg aagagaattt
     1321 taagcaacaa tatgaaatag ctgatcgttt gctagctctt ttcccaggaa taatgtgtta
     1381 ttggtataca tatcatttca aaaataagga aatctctggc ttaagtgaag aagacacaac
     1441 aggaggacac tttctggcgt tattacacgg acgcaagccc agcaaaatag aaaccgatat
     1501 gatgaatgtc tctttgatct tgtatgctga acacgaattt aacgcttcta cctttgctgc
     1561 aagagttaca gcggcaacac tggcagattt ttactcagcg atcacaagtg ctataggaac
     1621 attgcgtggt cctttgcatg gtggcgctaa tgaagcagct atggggttaa ttgagcgctt
     1681 taaaacccct gatgaagcag cgataggcat aaaacaaatg cttgccagca aagaactgat
     1741 catgggattt ggacatcgag tttatacaac ttgtgatcca cgctcagata ttattaagaa
     1801 atggtcattt agattaggtg aagaaaaggg gaacctactt ttataccata tttcagaacg
     1861 tattgaagaa atcatgtggc aagagaaaaa actatttccc aacctggatt tttatagtgc
     1921 atccgcttat cattactgcg atataccaac tcatttgttt accccaattt ttgtgatgtc
     1981 acgcatcaca ggatggtctg cgcacgtatt tgagcaaaga gcaaataata aactaataag
     2041 acctacttca gaatatatag gcccagattc caggccattt cctgctattg aaacacg
//
LOCUS       DACVWI010000324         2097 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.325, whole genome shotgun sequence.
ACCESSION   DACVWI010000324 DACVWI010000000
VERSION     DACVWI010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.325"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            247..885
                     /gene="ravN"
                     /locus_tag="JBH85_14955"
     CDS             247..885
                     /gene="ravN"
                     /locus_tag="JBH85_14955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector RavN"
                     /protein_id="HAU0947490.1"
                     /translation="MPTYFDPIMQEDTVLDENTIVYLVKIGDNKFSIKAISSGLEHLP
                     SDPTTHAEKYWPIPAKSLIDHSSNKLLFEEDKLTNQPISKDQVIELFAVDPDKTEPKQ
                     FSDSVKRELTENWAREVLQDQFAHAGQNPHFFFYQPLFIHGHHGDNPAQQQDNAIPIP
                     LPLLMFSLIPPMNNNNQQQMTLLFFNILLVPENQGHEPEQENTGEHTHGHSH"
     gene            complement(974..1669)
                     /gene="lem5"
                     /locus_tag="JBH85_14960"
     CDS             complement(974..1669)
                     /gene="lem5"
                     /locus_tag="JBH85_14960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem5"
                     /protein_id="HAU0947491.1"
                     /translation="MVRFFKDREIEIKDSAGEYYKKLCNALKTTMSVCIASTSALVIN
                     ELSAKINKDRMTQYEENSSIAIHGIGEIRVFLLRIFKHLEDNKIDFLDGRAAIKNTMS
                     KGMAGNCEHQAFYLAALLRQQNIPALIYDIEDINHTVVISENYLLDPWIGEIYMLAHT
                     DLRPFYGSSLNMKASWLNRLLSNKKFSYPDELTLQTLKEYFVQLEDQNKIGLNILDNK
                     IGIGHQIPCELSY"
     gene            1801..1935
                     /locus_tag="JBH85_14965"
     CDS             1801..1935
                     /locus_tag="JBH85_14965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter"
                     /protein_id="HAU0947492.1"
                     /translation="MEFKMTKYRDAGTGRYVTKEFAKKHPGITIGENSKPKSQRKPKK
                     "
BASE COUNT          697 a          411 c          333 g          656 t
ORIGIN      
        1 atagataaac tgtaaaatct tgccttagtt aacaggtttc caaaaaactc gattaatact
       61 tattttcgat actcaaagaa taattaatag tctttcaaaa acattcattt tgcacataac
      121 tttttctcct ggtttcaagc aattattgtt ttcacatgat caaataatga atcaaaagta
      181 ttgcaaaagc caatttgatc ctataagtta ctattgagtt taaataacag ctaaaggact
      241 attattatgc caacttattt tgatcctatt atgcaagaag atactgtact ggatgaaaac
      301 acgatcgttt acttagttaa gattggtgat aataaattca gtattaaagc aatttcatca
      361 ggattggagc acctccccag tgatccaact actcacgcgg agaaatattg gcctattcct
      421 gccaaatcat tgattgatca ttcaagtaac aagctccttt ttgaagagga taagttaacg
      481 aatcaaccca taagcaaaga tcaggtaata gaactatttg cagttgatcc cgataagact
      541 gaacccaagc aatttagtga ctccgttaag agagagttaa ctgaaaactg ggcacgagag
      601 gtactacagg atcaatttgc tcatgcaggg caaaaccctc atttcttttt ttatcaaccc
      661 ctattcatcc atgggcatca tggagataac cctgctcaac aacaggataa tgcaatacca
      721 attcctctcc cactcctgat gttttccttg ataccaccca tgaataataa taaccaacaa
      781 caaatgacat tattattttt taacatactc ctggtacctg agaatcaagg ccatgaacct
      841 gagcaggaaa atacaggcga gcatactcat ggacactcac attaaaccca acctgtatta
      901 ctaactgttg taaatgtcgg gcgcctcgcc cgacatctcc agtttgactg gaacgctcaa
      961 caccaatccc tttttaataa gatagctcgc aaggtatttg atggcctata cctattttat
     1021 tatctaaaat gttaagtccg attttgtttt gatcttctag ttgtacaaaa tattctttta
     1081 atgtttggag agtgagttca tcagggtagc tgaacttttt attacttaat aatcgattta
     1141 gccatgaagc tttcatattt agtgacgacc cgtaaaacgg tctgagatcc gtatgggcaa
     1201 gcatataaat ctcacctatc catggatcaa ggagataatt ttcagagata actacagtat
     1261 gattaatgtc ttcaatatca taaataagcg caggtatatt ttgttgtctc agcaatgcag
     1321 caagataaaa agcctggtgt tcacaatttc ctgccatccc ctttgacatg gtatttttta
     1381 ttgccgccct cccatccaga aaatcaatct tgttgtcctc aagatgttta aatatcctga
     1441 gcaggaaaac tcttatctca ccgataccat gaatagcgat agagctattt tcctcatatt
     1501 gagtcattct atctttattg atttttgcgc ttagttcatt aataactaat gcagaagtgc
     1561 tggcgatgca cactgacata gttgttttca gagcattaca tagttttttg taatactcac
     1621 ctgctgaatc tttgatttca atttccctgt ctttgaaaaa tctgaccatg tctaatccct
     1681 tatatccatt aagcgcttta gtttacatac aagtatggaa tgagcaaaca gaacagcctc
     1741 ttttcaccaa aaccactctt gctaattgta tttgctatac ttcaattggc acatataaaa
     1801 atggagttta aaatgacaaa atatagagat gcaggaaccg gccgatatgt caccaaagag
     1861 tttgcaaaaa aacatcctgg aataaccatt ggtgaaaata gcaagccaaa atcacaaaga
     1921 aaacctaaaa aataatcacc attaagtaat tggtttgagg ctgcatttta tacaaaaaaa
     1981 agaccatgtt acctttaaaa tagctctcta aaataggcca ttgagaagtt tgcttgatgt
     2041 tttagtatta atctatcaat atacatgtgg tgtacgaggt caattctatt aacgaat
//
LOCUS       DACVWI010000325         2081 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.326, whole genome shotgun sequence.
ACCESSION   DACVWI010000325 DACVWI010000000
VERSION     DACVWI010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.326"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            233..501
                     /locus_tag="JBH85_14970"
                     /pseudo
     CDS             233..501
                     /locus_tag="JBH85_14970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094779.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
     gene            525..2075
                     /locus_tag="JBH85_14975"
     CDS             525..2075
                     /locus_tag="JBH85_14975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAU0947493.1"
                     /translation="MIDQELKKKIVNTISQYEHKCDKMQNQINTLRNVINQLIINPIG
                     INYELDDRLSQLRNYLDTEFEPAVIEKKVKRLAEILSKMQRKKAENSRLVNGLIKQGV
                     ESIGRIANKSQDKRAVTKLQKMLDTEMESHAILIRFNQVLTQCISSVIKELEELPQIT
                     KVDNPSKSYQSEISLKVNDSLQQLLNHLSIPQDLDSKRGIIKTNLEHALTDEELSTII
                     DNLTELVVESFNVEQNRFKGFLQQLTDQLNDFEIYLRVSGDARKKASEDSRLLECGIQ
                     DNLDQIKNHLDTSKTIEELSSKVSQNIKMIGDRLKEYRHNEKIREEEYAKQVSELQAR
                     LQESEQNAEEIKNLLAFQKYRINHDSLTGLPNRESYEEHILDSFQRWKRSSSALSLAV
                     CDIDHFKRINDNFGHLAGDKVLKKVAMIFKSSIRTVDFIARIGGEEFVFIFEQTSSKE
                     AFGILEKLRKLVEDCLFYYREKKVDVTVSFGLTTVTEKDDIESLFMRADNAMYKAKNA
                     GRNRVEIL"
BASE COUNT          737 a          307 c          420 g          617 t
ORIGIN      
        1 actcttatta atcatttatc cctatgcctt gtctaatctg gctttatcat tatttttaat
       61 tgtttcattg ggtatctccg gcctgttact gaattggttt aatgcttcta aaatgacatg
      121 agggttcaat cggcataaaa taattataaa ttctgaatat ctttcatttt atggcataca
      181 attaaaaatg agccaggctt agaagctgat cgcttatgga gaaactctca tcatggatga
      241 taataattca gagtttaagc atttatttcc aatagctgtg gaggtaacag aaggaaagac
      301 ttacgtatgg tgtggttgtg gcaaaagcaa gacccagcct ttctgtgata aagagaattg
      361 cggggataaa gcagtctctt ttatagcaga tttgactgaa gacatttatt tttgcaattg
      421 caaacaaacc aaaagccctc ctttttgtga tggatcgcat gcaaagattt tgcttgaagt
      481 ggttaaaaaa aggcaaaata aatgaacggg aaaggaagtc ttaaatgatt gatcaagaat
      541 taaagaaaaa aattgttaac acaattagcc aatatgagca caaatgtgac aagatgcaaa
      601 atcaaattaa tacgctcaga aatgtgatta atcaattgat tattaatccc attggaatta
      661 attatgagtt ggatgatcgc ctttcgcaac taagaaatta tttggatact gaatttgaac
      721 ctgctgtcat agaaaaaaaa gtgaaacgtt tggcagaaat actttccaaa atgcaaagga
      781 aaaaagcaga aaattctcgt ttagtcaatg gactaatcaa acagggcgtg gaatccattg
      841 gtcgtattgc caataaatct caggataaga gagccgttac aaaattacaa aaaatgctgg
      901 ataccgagat ggaaagccat gcgattttga ttcgttttaa tcaagtctta actcaatgta
      961 tttcttctgt gattaaggag ctggaggagt taccacaaat tacaaaagtc gataacccct
     1021 ccaaaagtta tcaatctgag attagtttaa aagtaaatga cagcttgcaa caattactta
     1081 accacttatc tatccctcag gacttggatt ccaagagggg aatcataaaa acaaatttgg
     1141 aacatgcact caccgatgaa gagcttagca ctattattga caatttgacg gaattagtcg
     1201 ttgagtcatt taacgttgag cagaatcgat tcaaagggtt tcttcaacag ttaactgatc
     1261 agctcaatga ttttgaaatc tatttaagag tatcaggaga tgctcgcaaa aaggcaagtg
     1321 aagacagtcg tttattagag tgtggaattc aggataatct tgatcaaatc aagaatcatt
     1381 tggatacctc taaaacgatt gaggaattat cttcaaaggt gagccaaaat ataaaaatga
     1441 ttggtgacag gttaaaagaa tatcgacaca atgaaaaaat ccgagaggaa gaatatgcaa
     1501 agcaagtatc cgagttgcaa gctagattac aggaatccga gcaaaatgcg gaagaaataa
     1561 aaaatttgct tgcttttcag aaatacagaa ttaaccacga tagtttaaca ggtttaccta
     1621 atagagaatc ttatgaggag catattctgg actcatttca gcgctggaaa cgaagttcaa
     1681 gcgcattgtc tcttgctgtg tgtgacatcg atcattttaa acgtattaat gataattttg
     1741 gccatcttgc aggagataag gttcttaaaa aggtagctat gatttttaaa tcatcgatca
     1801 ggacggttga ttttatcgct cgaataggtg gtgaggaatt tgtgtttatc tttgaacaaa
     1861 ctagcagcaa ggaagctttt ggaattttgg agaaattacg taaattagtt gaagattgtt
     1921 tgttttatta tcgagagaaa aaagtcgatg ttacggtttc ttttgggcta actacggtaa
     1981 ccgaaaaaga tgatattgaa tctttattta tgcgggcaga caatgccatg tataaagcta
     2041 aaaatgcagg aaggaacagg gtagaaatat tatagtggaa t
//
LOCUS       DACVWI010000326         2079 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.327, whole genome shotgun sequence.
ACCESSION   DACVWI010000326 DACVWI010000000
VERSION     DACVWI010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.327"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            28..1392
                     /gene="gorA"
                     /locus_tag="JBH85_14980"
     CDS             28..1392
                     /gene="gorA"
                     /locus_tag="JBH85_14980"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HAU0947494.1"
                     /translation="MTMKTKHFDLIVLGGGSGGIASAVRAAQYGAKVAVIEQNHLGGT
                     CVNLGCVPKKIMYNASSIAETLHKSPDYGFFLENNAKLDWKRLVNKRNAYIERLRENY
                     EKRFSQHKITLIQGKGIFHDQSSITIDHTIYQAEHIIIATGSEPALPAINGIKHAIDS
                     DGFFSLTKLPAKVAVIGSGYIGVELAGILNSLGSETHLLMRGTRPLSRFDHMIGDTLM
                     EIMQKQGICIHQNHKAQAIHLHSDGRKSILCQSGSIIENIDVIISAVGRKPRTGNLNL
                     DKINVNMDDKGLILVDAFQNTSVKGIYAIGDVTNAPALTPVAIAAGRRLADRIFGNQP
                     DACLNYDNICSVVFSHPPSGSVGLTEHEAIEKYGKNKIKIYQTRFIPMYDALSIDKTP
                     TAMKLVTLGKKEKIIGLHVVGYSADEMLQGFGVAIKMGACKKDFDNTIAIHPTSAEEF
                     VTMV"
     gene            1399..1935
                     /locus_tag="JBH85_14985"
     CDS             1399..1935
                     /locus_tag="JBH85_14985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HAU0947495.1"
                     /translation="MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAV
                     IRGDVNYIQIGHSCSIQDGAVLHVTHDGPYTPGGRPLILGQGITVGHKALLHACTIND
                     YCLIGMGSIILDSAHIQKHVMIAAGSIVPPGKILQSGYLYLGSPVQAVRKLTAKEIEQ
                     IEYSAGHYIRLKNKYLTY"
BASE COUNT          671 a          367 c          418 g          623 t
ORIGIN      
        1 gctactatta ttttattttc ctattaattg actatgaaaa caaaacattt tgaccttata
       61 gttcttggag gaggaagtgg cggaatagct agtgctgttc gtgctgctca gtatggagcc
      121 aaagtagcag ttattgaaca aaaccacttg ggagggacct gcgtgaattt aggatgtgtc
      181 cccaaaaaaa ttatgtacaa tgcttcatca attgcagaaa cactccataa atctcctgat
      241 tacggttttt tcctggaaaa taatgccaag ttagattgga agcgactagt gaataaacgc
      301 aatgcgtata ttgaacgttt aagagaaaat tatgagaaac gattttcaca gcacaaaatt
      361 actctgattc aaggtaaggg cattttccac gatcaaagtt ctatcacgat agatcatact
      421 atttatcaag cagaacatat tattattgca actggcagtg agccagctct accagcaatt
      481 aatggcatta agcatgctat tgattctgat ggtttctttt cattaaccaa attaccagct
      541 aaggtagctg ttattggtag cggttacata ggtgttgaat tagcaggaat ccttaactct
      601 cttggtagtg aaactcactt attaatgaga ggtacacggc cactgagtcg ctttgatcat
      661 atgattggcg atactttaat ggaaattatg caaaaacaag gaatctgtat tcatcaaaac
      721 cataaagccc aagctatcca tctccatagc gacggcagaa aaagtatttt gtgccaaagt
      781 ggctctatta ttgaaaatat tgatgtcatt atatctgctg taggtcgaaa accgcggact
      841 ggcaatttaa atcttgataa aataaacgtt aacatggatg acaaaggatt aatcctggtt
      901 gatgcattcc aaaatacatc ggttaaaggt atttatgcta ttggcgatgt cactaatgct
      961 cccgcactaa ctcccgttgc aatagcggca gggaggcgtt tggcagaccg aattttcggg
     1021 aatcaacctg atgcctgctt aaattatgat aatatttgtt cagtagtgtt ctctcatcct
     1081 ccatctggtt ctgtcggttt aaccgagcat gaagccattg aaaaatatgg taagaataaa
     1141 attaaaatat atcaaacccg tttcatccct atgtatgatg ccttgagtat tgataaaacc
     1201 cctactgcga tgaaattggt taccttgggt aaaaaggaaa agattattgg tttacatgtc
     1261 gtcggataca gcgccgatga aatgctacaa ggctttgggg ttgccataaa aatgggcgca
     1321 tgtaaaaagg acttcgataa tacaattgca attcatccaa ccagtgctga agaatttgta
     1381 actatggtgt aaatatacat gaactattcc attcgtaaat ttgaagacaa gtatcctgaa
     1441 ttaggtgaac gagtttatat tgatccgcaa tccactgtca ttggtaacgt aaccctggga
     1501 gatgacgtat ccgtatggcc tatggctgtt attcgtggtg atgtcaatta tattcaaata
     1561 ggccattcct gcagtattca agacggtgct gtgctgcatg ttactcatga tggtccttat
     1621 actccaggcg gtaggccatt aattttaggg caaggaatca cggtagggca caaagctcta
     1681 ttacacgcct gcactatcaa tgattactgt ttaattggca tgggatctat aattttagac
     1741 tcagcgcaca tacaaaaaca tgtcatgatt gctgcaggaa gcattgtacc tccgggaaaa
     1801 atactccaaa gtggatattt gtatttggga agcccggttc aagccgtcag aaaattaact
     1861 gcaaaagaga tagaacaaat tgaatattct gcagggcatt atataaggtt aaagaataag
     1921 tatcttacat attaggttac gagctactca tttttcttat ccacatatta cttttgataa
     1981 attaaaaaaa gaaatcaagc catttaaact caacttatga cttaaagagc cagtgaagta
     2041 acgagtattt gatgtagaaa agacgatgta atttatttt
//
LOCUS       DACVWI010000327         2076 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.328, whole genome shotgun sequence.
ACCESSION   DACVWI010000327 DACVWI010000000
VERSION     DACVWI010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.328"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            139..909
                     /locus_tag="JBH85_14990"
     CDS             139..909
                     /locus_tag="JBH85_14990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HAU0947496.1"
                     /translation="MTILVFDIETIPDIESGRRLFALDGLSDEDTACAMFALRREKAG
                     NDFLPHYLQKICAISVVISHGNQIKVWSLGDENSDEKELITRFFAGIDKHTPTLVSWN
                     GSGFDLPVLHYRSLYHSISAPTYWETGENQQTFKWNNYLSRFHYRHIDLMDVLAGYQN
                     RAFAPLDDISTMLGFPGKMGMSGSKVWEQYQAGQLKEIRDYCETDVLNTYCVYLRFEL
                     MRGTISQEGYDRNIAQLKNYLGAEKDKMHLQEFLKKML"
     gene            complement(962..>2076)
                     /locus_tag="JBH85_14995"
     CDS             complement(962..>2076)
                     /locus_tag="JBH85_14995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HAU0947497.1"
                     /translation="NKPKLSEHLIIYILSLLDPKSQSVASLVNKDWSRLVQLTRQYLS
                     MLPVIHRIPLFANLGLDVLKLKLMTGGMTNSTVRLRIKNAPEKWVMRIPGIGSSAFIT
                     RRDEAHNAKQAEKLGLNVPIAFFDPEDGLQVTRFIEGVHSLDDKALARKEILHEVASM
                     MRRLHKSPPFDNNTLFFERNEELLDLLKRKPFNFPGEIEFVEQQMKNLKEIFSSYHIQ
                     QFPCHNDTTPLNFILSENPEIKGSEKIHQIDWEYSSNNDFIWDLVYFMVEAKLNREQQ
                     LILLKAYFNTEELSDSLLAWIEVYKPIIEWWITIWSWTQLANGANAVDLSSYEQLGLE
                     RYHNTLSHLKSEDYVKALALIEADSHSLTFTGQRPF"
BASE COUNT          659 a          405 c          389 g          623 t
ORIGIN      
        1 tttaaagtta cttctattcc ttcacatgat agaatcaatc agatatccca attgtgattt
       61 tgacaaatcc gagacttgtc gataatttca agcaaatttg caaaaataag aatgaagacc
      121 gaattggact aataaattat gacaatactt gtttttgata ttgaaacaat tccagatatt
      181 gagtcagggc gaaggctttt tgcactagat ggcttatcag atgaagatac ggcatgcgct
      241 atgtttgcct taaggcgtga gaaagcaggc aatgattttt tgcctcatta cttacaaaaa
      301 atctgcgcta tatcagtggt aatcagtcat ggaaatcaaa taaaagtatg gtctcttggc
      361 gatgaaaatt ctgatgaaaa agaattaata acccgttttt ttgctggaat tgacaaacat
      421 acacccaccc tggtgagctg gaatgggagc ggttttgatc ttcctgtact gcattaccga
      481 tcactatatc atagtattag cgcgcccact tattgggaga caggagaaaa tcaacaaacc
      541 ttcaaatgga acaattatct aagccgcttt cactaccgac atattgatct aatggatgtt
      601 cttgcaggat atcagaacag agcttttgcc cctcttgatg acatttcaac catgctaggt
      661 ttccctggaa aaatgggaat gagtggctct aaagtttggg aacaatacca ggcaggccaa
      721 ttgaaagaaa taagagatta ttgtgaaaca gatgtactca acacctattg tgtgtattta
      781 agatttgagc tgatgcgtgg cacaattagc caggaaggtt atgacagaaa catagcacaa
      841 ctcaaaaact atttaggtgc tgagaaagac aagatgcatt tacaggaatt tctcaaaaaa
      901 atgctctgaa gatcttaatc gtcactgtaa acgagttgtc ctctctagat aatggcggca
      961 gctaaaaagg cctctgcccc gtaaaagtaa ggctatgact atctgcttca atcagtgcca
     1021 gggctttgac atagtcctca cttttcaagt gacttaaggt gttatgatac cgttcaagcc
     1081 ctagttgctc ataagaactc aaatcaactg cattagctcc atttgccaat tgcgtccatg
     1141 accaaatggt tatccaccac tcaatgatgg gtttataaac ctctatccat gccaacagag
     1201 agtcactcag ctcttctgta ttaaagtaag ctttcaacag aataagctgt tgttcgcggt
     1261 ttagcttggc ctcaaccata aaataaacca aatcccaaat aaaatcatta ttacttgaat
     1321 attcccaatc aatctgatga atcttttcag aacccttgat ttctggattt tcggacaaga
     1381 taaaattaag tggcgttgta tcattgtggc aaggaaattg ctgaatatga taagaagaaa
     1441 aaatctcctt tagatttttc atttgttgct caacaaattc tatttcccct gggaaattaa
     1501 agggttttcg ttttaataaa tccaataact cttcatttcg ctcaaaaaaa agcgtgttat
     1561 tatcaaaggg aggagattta tgaagtcttc tcatcataga tgctacctca tgcagaattt
     1621 ccttgcgggc caaggcttta tcatccagag aatgcactcc ttctataaag cgcgttacct
     1681 gcaacccatc ttcaggatca aagaaagcta ttggaacatt cagtccaagt ttttcggctt
     1741 gtttagcgtt gtgagcttca tctcttctgg ttataaatgc tgaagagcct attccaggaa
     1801 tccgcataac ccatttctca ggcgcatttt tgattcttag cctaactgtt gaattcgtca
     1861 tgccacctgt cattaatttt aatttcaaaa cgtcaagacc caaattcgca aataaaggta
     1921 ttcgatgaat caccggtaac atagacaggt attgccgtgt caattgaacc agccgggacc
     1981 agtctttatt cactaaagaa gcaacagact gagacttggg atctagcaaa ctgagtatgt
     2041 aaatgattaa atgttcgctt aatttgggtt tattat
//
LOCUS       DACVWI010000328         2062 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.329, whole genome shotgun sequence.
ACCESSION   DACVWI010000328 DACVWI010000000
VERSION     DACVWI010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.329"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(6..212)
                     /locus_tag="JBH85_15000"
     CDS             complement(6..212)
                     /locus_tag="JBH85_15000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014844519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947498.1"
                     /translation="MNINELIEHWKYISSIVRAPQSTEDYNQLANVLDQLLDIVKDDE
                     SHELMGLVDIISHMISIYDETHDY"
     gene            549..1817
                     /locus_tag="JBH85_15005"
     CDS             549..1817
                     /locus_tag="JBH85_15005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2372 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947499.1"
                     /translation="MKVKYSLFVIDKIKKYNYQRASNYRSTIMSTTIDEATKRLDNMV
                     KLLKEFKKEVKAQKFKSERNFENSSTIFAEFNSELNELKKLKHHNLARVIVEYLGQVI
                     EKNDLNMKLIITNKDTTQNIVELEMTSNLKKKEFYKKGIVIATDTSAINHELMKYVSE
                     VTVNCHWSRKNRTSYNSTRELVDTVANELKHEKQYPRLKRFTILGCDTADIIPPEVET
                     KSSSAMLYVYQCEKNNAATPDRKKIQSFPCFVLTISQGQYQLHYYIDQDKEGTCGEMV
                     KITKQKKLQNNYKVLAVCNKNDIPLIPDSILKNIYDKTNSAKINGVNNPYLHRGATVG
                     NVQSREEWRNRKKNIPALSCGLFKFDNKKIHNSNLAESAALIINNSRSNVKVKGYLIP
                     ITPDENHGFMKPMTIHEDTPCKAVIIDHGQ"
BASE COUNT          742 a          376 c          370 g          574 t
ORIGIN      
        1 atttatcaat agtcatgagt ttcatcgtat atagaaatca tgtgactgat aatatcaact
       61 aatcccatta attcatgaga ctcatcatcc ttgactatat ccaacagctg atcaaggaca
      121 ttagccaact gattataatc ctccgtactt tgaggcgccc gtactattga tgagatatat
      181 ttccagtgtt ctattagttc attgatattc ataattcagc catctccatc atatgctcaa
      241 gtataaaatt aacaacctgc tgcattggct tacgcaaccg atcaacatct ttatatatcc
      301 tgctgtaaca tcattattca tttgaaacat cttggtagct atcatgaagt cggtgataac
      361 tccataccgg aaggctgatt atctctacgg gataacgata tcttttcggc ctttgctccg
      421 acatctttcc acaggtaaat agagcatagt gtacacaaaa agttaagttg ccgtcccagg
      481 cctaatagga gtttgggctg ctttattgtt ggaattgaaa atatacttta aggaacattt
      541 cagcccaatt gaaggttaaa tatagcctgt ttgtaataga taagatcaaa aagtataatt
      601 atcagagagc atcaaactat agatcaacta ttatgagtac aactattgat gaagcaacta
      661 agcgcttaga taacatggtt aaattattaa aagagtttaa gaaggaagtc aaagctcaaa
      721 aattcaagtc agagagaaat ttcgaaaatt ccagtaccat ttttgcagaa ttcaatagcg
      781 aactgaatga actaaaaaaa ttaaaacatc ataatcttgc aagagtaatt gtggaatatt
      841 taggtcaggt catcgaaaaa aatgatctca atatgaaact gataattaca aataaggata
      901 cgacacaaaa tatagttgaa cttgaaatga ctagtaatct caagaaaaaa gagttttata
      961 aaaaggggat cgtgatagcc acagatacat cagccatcaa tcatgaatta atgaaatatg
     1021 ttagtgaagt cacggttaat tgtcactggt ccaggaaaaa tagaacatcc tacaacagca
     1081 cgagggagct agttgatact gttgccaacg aactgaagca tgagaagcag tatccgcggc
     1141 tcaagcggtt taccatttta ggctgcgaca cagcggatat aatccctccc gaggttgaaa
     1201 ccaaatcatc ttctgcaatg ttatatgttt accaatgtga aaaaaataac gctgctaccc
     1261 cagacaggaa aaaaatacaa agtttcccct gttttgtact cacaatttca caaggacaat
     1321 atcagctcca ttactatatt gaccaagaca aagaaggaac ctgtggagaa atggttaaga
     1381 ttactaagca aaaaaaactc caaaataact ataaggtgtt agcggtttgc aataaaaatg
     1441 acatccccct catacccgat agtatcttaa agaacattta tgataaaaca aattctgcga
     1501 aaataaatgg tgtaaataac ccctacttac atagaggcgc taccgtaggc aatgtacaat
     1561 caagagaaga gtggagaaat cggaaaaaaa atattcccgc actctcgtgt ggtttattta
     1621 aatttgataa taaaaaaatt cacaactcaa atttagctga aagtgcggct ttaattatca
     1681 ataatagccg gagtaacgtt aaagttaaag gctatttaat accaattact ccggatgaaa
     1741 accacggatt tatgaaacca atgacaatcc acgaggacac gccttgtaaa gcagttatca
     1801 ttgaccatgg gcagtaaatc gttcacgatc tgaccctagt cccgttcgcg aattgatgac
     1861 gttatttgat ggtaaatcag aacaggcgga gttttatatt taagatttga gagtttgcag
     1921 gatgaacaaa gcaaagcgtg tccaccggga caaaattggg ctatgatcgg taggcacgtc
     1981 actgggttcc tttgtccatc ctatatatct ggtaaattgg cttttaatca attcaaaaac
     2041 gcttatagac attcatgtcg aa
//
LOCUS       DACVWI010000329         2046 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.330, whole genome shotgun sequence.
ACCESSION   DACVWI010000329 DACVWI010000000
VERSION     DACVWI010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.330"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..2039)
                     /locus_tag="JBH85_15010"
     CDS             complement(<1..2039)
                     /locus_tag="JBH85_15010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAU0947500.1"
                     /translation="MQSMVFHKSSNSYYTAYYLTVAFATLTFIFGLSVLIGWHFNIEF
                     LIQYQPNTVAIVYNTALCFIILSFSIFLFLNCYYKSAITLSTTVFILSGLALTQHVFS
                     INLQIDEVFFHHYQSIENAYPGRMASNTAFCFLLITTALVLMNIRGYQSFNNSLAGAL
                     GLLVFCLALLFISGYFSDIQQAYKWGNKTPMSINTGIGFLLLSLAVMGLYWHNNTLYQ
                     LNSGIAMPYLSAFCIMFTFSLLSFEIFKKEKELNLSTNLSISTLALGVFFSILFGLII
                     RLWQLAKISAVTAKYALSEIKATLESTADGILVVDRAGKVMNYNKRFLNMWYQEERSL
                     KTINYHDIKLIINKQLINRRETIQRINKILKNPNYQHAFELKFKGEIYYDCYTQPLKL
                     DDEIIGRVWSFRDITIPKRLEIELSHQSTHDMLTNLPNKVLAINMLGYAMKTAVSSKK
                     IVGVYLLDLDRFTQINDVFGHSKGDEIIKAISKRLIDCVPMNHMLGRLSGDQFIVIAS
                     INNSKEVVTGVTRLLSAFHEPVKMNGHSIKMSCSVGISFYPKDGNTVDTLLSKADIAL
                     SRTKVEGRNSFQFYTQEMHSYTLEHILLESELKNAVAKNEFVLYYQPILKLSSLNVIG
                     FEALIRWNHPRNGLILPDKFIPLAEEIGIIGEIGDWVFVTVCKQIQAWQLQGFKN"
BASE COUNT          706 a          356 c          321 g          663 t
ORIGIN      
        1 atatttttaa atccttgaag ttgccatgct tgtatctgtt tgcatacagt gacgaacacc
       61 caatcaccaa tttcaccaat tattcctatt tcttctgcaa gaggaataaa tttgtccgga
      121 agaattaatc cattgcgagg gtgattccag cgaattagag cttcaaaacc aatcacattc
      181 aaagaactca atttgagaat aggttggtaa tacaaaacaa actcattttt tgccactgca
      241 ttctttaact cactttccag taaaatgtgt tctaaagtat agctatgcat ttcttgtgta
      301 taaaattgaa aactattgcg accttcaact tttgttcgag acagggcaat gtcagcctta
      361 gacaataagg tgtcaactgt atttccatct ttagggtaaa acgaaatccc cacactgcaa
      421 ctcattttaa tactatgacc gttcatttta acaggttcgt gaaatgcact cagtaaacgt
      481 gtgactccag taactacctc cttactattg ttaatactgg caattacaat aaactgatcg
      541 ccactaagtc gtccaagcat atgattcatc ggcacgcaat caattaaccg ttttgaaata
      601 gcttttatta tttcatctcc cttactgtgc ccaaacacat cgttgatttg tgtaaatcga
      661 tctaaatcta ataaatatac tcctactatt tttttactac taacagctgt tttcattgca
      721 tatcccagca tgttaatagc caatacttta ttaggtaaat tggtaagcat gtcatgtgta
      781 gattggtgag atagctctat ttcaagcctt ttaggaatag taatgtctct aaaactccaa
      841 acacgcccaa tgatttcatc atccagtttt agtggttgag tatagcaatc gtaatatatt
      901 tcacctttaa attttaactc aaatgcgtgt tgataatttg ggtttttcaa gatcttatta
      961 attctttgga ttgtttccct tcgattgatt aattgtttat taattatcaa ttttatatca
     1021 tgataattta tcgttttcag agatctttct tcttgatacc acatatttaa aaagcgttta
     1081 ttgtaattca tcaccttgcc tgctctatcc actaccaaaa taccatctgc tgtagattcc
     1141 agagttgcct taatttctga taatgcgtat ttagcagtta cggctgatat ttttgccaat
     1201 tgccataatc taatgattaa tccaaacagg atggaaaaaa aaactcctaa agcaagcgta
     1261 ctgattgata aattagtgct taaatttagt tctttttcct ttttaaaaat ttcaaatgat
     1321 aacaaggaaa aagtaaacat aatgcaaaat gcacttaaat aaggcattgc aataccagag
     1381 tttaattgat aaagggtatt attgtgccaa tataatccca tcaccgctaa agaaagtaac
     1441 aaaaaaccaa tccctgtgtt gattgacatg ggggttttat taccccattt ataagcctgt
     1501 tgaatgtctg aaaaataacc acttatgaac aataaagcca aacaaaatac taataagcca
     1561 agtgcacctg ccagagaatt attaaaggat tgatagcctc ttatattcat caaaacaagt
     1621 gctgtagtga ttaataaaaa gcaaaaggct gtattagagg ccattctgcc tggataagca
     1681 ttttcaatag attgatagtg atgaaagaat acttcgtcga tctgaaggtt aatactaaaa
     1741 acatgctgtg taagcgctaa accagataaa atgaaaacag tagtacttaa agtaatggct
     1801 gacttgtagt agcaattgag gaataaaaaa atagaaaagg ataaaataat aaagcataaa
     1861 gctgtattgt aaacgattgc taccgtattt ggttggtatt gaattaaaaa ctcaatatta
     1921 aaatgccaac caattaaaac agacagccca aagataaatg ttagagtggc gaaagctaca
     1981 gttagatagt atgcagtgta gtaagaattg gatgatttat ggaacaccat cgattgcata
     2041 atatta
//
LOCUS       DACVWI010000330         2005 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.331, whole genome shotgun sequence.
ACCESSION   DACVWI010000330 DACVWI010000000
VERSION     DACVWI010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.331"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..750)
                     /locus_tag="JBH85_15015"
     CDS             complement(<1..750)
                     /locus_tag="JBH85_15015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947501.1"
                     /translation="MKDTFMNLVQRMNPFFWLVILAIYSTPSMALSVELIETSPKSPV
                     TLNQDEALYVLIRYKSDQPLRFQAIGENLRQKIMDSARFNPSQAYPAGEGEAIAWVAY
                     DNTTEIDSITVTIYDANWRTLQTKSIPVSAVWQNENGRNNQAAAPWVQRLNQQQQSSV
                     FTQSQTPVSSGNALFIQLLFLLILLYWFLQIIVIFNWTGRWKKLACFPLLFSVPLLLY
                     TLYALYAGSNLWPLMMLFVTPFILALLLIIIG"
     gene            complement(868..1899)
                     /locus_tag="JBH85_15020"
     CDS             complement(868..1899)
                     /locus_tag="JBH85_15020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HAU0947502.1"
                     /translation="MKEILMYSLDWPRAYGIPNSTATFKLFPEDFQVNELFEGQFSGE
                     GEHIVLKIEKRGLTTEEVVKSLARLINKPIKLISYAGLKDKQALTTQWLSVHAPGEII
                     DGIETLEAPGWRILECTRHNKKLKPGFLSGNHFIITLRNVSDESDLVHRIEQIKFKGV
                     PNYFGEQRFGRDGGNLIKAEEILVQGRKVKDRFLKGMYFSAARSWLYNLILSRRVKES
                     SWNLPLLGDVIQLVGSNSIFVNDKSMDEQLLQRIGDKDVSPASPLPGRSKNLVKGTAL
                     QIINDVYEEWSAWLDGLEKNGLEEAWRANILYAEQIEYRINQGTVELSFVLPAGAYAT
                     VVLRELVQY"
BASE COUNT          630 a          428 c          337 g          610 t
ORIGIN      
        1 cccgataatg atcaataaaa gtgccaggat aaatggtgtc acaaataaca tcatcaaagg
       61 ccataaatta gaacccgcat ataacgcata aagcgtatac aacagcaaag gtacgctaaa
      121 taataaaggg aaacacgcca attttttcca tctccccgtc caattaaaaa taacaataat
      181 ttgcaaaaac caatacaaaa gaattagtaa aaaaaggagt tgaataaaca gggcattacc
      241 agaggagaca ggagtttgtg actgagtaaa aacactggat tgctgttgtt gattcagtct
      301 ttgaacccag ggggctgctg cttgattgtt tctgccattc tcattttgcc agactgcaga
      361 cacaggaatt gatttggttt gcaaagtcct ccaattggca tcatagattg tgacagtaat
      421 ggaatcaatt tctgtggtat tatcgtaagc tacccaggca atagcctcac cttctccggc
      481 tgggtacgct tgtgatgggt taaatctggc gctatccatt attttttgcc gcagattttc
      541 cccaatagcc tggaatcgca aaggttggtc actcttatat cgaataagca catacaaagc
      601 ctcatcctgg tttaatgtaa caggagattt aggactggtt tcgataagct ccacactcaa
      661 tgccatggat ggagttgaat aaatagccag gatcactagc caaaaaaaag ggttcatcct
      721 ttgaaccaga ttcatgaatg tgtccttcaa ttaaataaac atttctcttt attatggcat
      781 aacatcaaac atagtgatta attcatcaat tcaattaaaa ataattactc cacattgact
      841 aaagtgctat tcaagtgcaa acaaagctta atattgaacc aattcacgta ataccactgt
      901 cgcgtaagca ccagccggca agacaaacga aagctcaact gtaccttggt ttatcctata
      961 ttcaatctgc tctgcataaa ggatatttgc acgccaggct tcttccaaac catttttttc
     1021 taacccatca agccaggcag accactcttc ataaacgtcg tttattattt gcaaagctgt
     1081 cccttttaca agattcttac tcctgccagg cagagggctt gctggagaaa catctttgtc
     1141 accgattcgt tgcaataatt gctcatccat gcttttatca ttaacaaata tactgtttga
     1201 tccaacaagc tgtatgacat cccccaataa gggcaaattc catgatgatt cctttacacg
     1261 gcgagacagg atcaaattat atagccatga tcgggctgcg gaaaaataca ttccttttaa
     1321 aaatctatcc tttactttgc gcccctgtac tagtatttcc tctgctttaa ttaaatttcc
     1381 accatctcga ccaaaacgct gctcaccgaa ataatttgga acacctttga atttaatttg
     1441 ttcaatacga tgcactagat cactctcatc agagacattt cttaaagtga ttataaaatg
     1501 attgcccgat aaaaaacctg gtttgagttt tttgttatga cgtgtgcact ccagtattct
     1561 ccaacctggt gcttcaagtg tttctatgcc atcgattatc tccccgggtg catgaacact
     1621 aagccattgc gttgttaatg cctgtttgtc ttttaatcca gcgtaactga taagttttat
     1681 aggtttgtta attagcctgg ccaatgattt gacaacttct tccgtggtta atcctctttt
     1741 ttcaatttta agaactatgt gttctccttc accgctaaac tgtccttcaa acaattcatt
     1801 cacttgaaaa tcttccggaa acaacttaaa agtagctgta gaatttggaa taccataggc
     1861 acgtggccaa tctaaagagt acatcaagat ctccttcaat aaaaagggtt ctaaactaaa
     1921 tctacaaatt cactatgata tcaagagatt cagaacttat tggtttagct gatacattat
     1981 ttatcttaac atcgtttgat atagc
//
LOCUS       DACVWI010000331         2005 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.332, whole genome shotgun sequence.
ACCESSION   DACVWI010000331 DACVWI010000000
VERSION     DACVWI010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.332"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1921)
                     /locus_tag="JBH85_15025"
     CDS             complement(<1..1921)
                     /locus_tag="JBH85_15025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family membrane protein"
                     /protein_id="HAU0947503.1"
                     /translation="MQQEDRAPITQKNRSFSRNTARCFDTFMDTVDFLGRIGWPVIDL
                     AFRIWIAQQLLVSAILLTNHWDTAVYLAKNEYPVPWLSPEWEALLGILAQFVGGISLL
                     LGLFTRCGAAVIVGFAVMTQVYYQPIDLNLLWIALMLGYVLRGPGPLSLDNLFEHGFS
                     RSPLPFAMLIVTFVDRTREFFSSLYLFSLRMWLMISLLLINQHIQLISSDALPLLMPW
                     LPLNSASIVFNNVSLFMAIFLGLGLATRVVAIFGLIVVLLNFTPGVAGFYLYWMVVMA
                     ILFISGPGILSLDHLIFHALKKHYPQLSGKPAFSLDGLPRVVIIGAGFGGIACAKALR
                     HMPVKITLIDRHNYHLFQPFLYQIATGSLSPADIAISIRSIFLEQFNAEILLGNVTDI
                     NKEERLVIADNFTIPYDYLVIATGATHSYFGKDSWAPYAPGLKTINDGTSVRSRIIKS
                     FELAEIAESEEERKQFLNFVIVGAGPTGVELAGAIAELARFGIVKEFRHFDPASANII
                     LVQAAPRILPTFSEQISQKAQRYLESMGVKVLVNSMVEQIDSDGVIINKERIYSKSVF
                     WAAGVAASPASKWLQLEADPAGRVKVNDDLTVAGYSNIFAIGDTAASNAWNGKPVPGI
                     APAAKQGGAYVAKVIS"
BASE COUNT          672 a          452 c          358 g          523 t
ORIGIN      
        1 tggatatgac ttttgctaca taagcaccgc cttgttttgc agcaggagca ataccaggaa
       61 ccggcttgcc attccaggca ttcgaagcag ctgtatcccc aatagcaaaa atattagaat
      121 atccggctac ggtgagatca tcattcactt tcacgcgacc cgctggatca gcttcgagct
      181 gaagccattt tgatgcaggg gaagcagcaa cgcctgctgc ccaaaaaact gattttgaat
      241 aaattctttc cttattaata atcacaccat cgctatcaat ttgctcaacc atactattca
      301 ctaaaacttt aacccccatg ctttccaaat agcgttgtgc tttttgtgat atttgttctg
      361 aaaaggtagg caaaatccgc ggtgctgcct gaaccagaat aatatttgct gatgccgggt
      421 caaaatgacg aaactccttt actatcccaa atcgagccag ttctgctatg gctcctgcaa
      481 gttccactcc agtaggcccg gcgcctacaa taacaaaatt taaaaattgc ttgcgttctt
      541 cctcactttc agcgatctcg gccagttcaa acgactttat tatacggctt cgaacagaag
      601 ttccatcgtt aattgttttt aacccgggag catagggggc ccaactgtcc tttccaaaat
      661 aactgtgcgt tgctcctgta gcgatgacca gataatcata tggaattgtg aaattatcag
      721 ctatgacaag acgttcctct ttattaatat ctgttacatt acccaataat atttccgcat
      781 taaattgttc taaaaatata gagcgaatcg aaattgcaat atcggctggt gataaacttc
      841 cagtagcaat ctggtataaa aaaggttgaa aaagatgata gttgtgtcta tcaatcaaag
      901 taatcttgac tggcatatga cgtagtgcct tagcacaagc aatcccccca aaacctgcac
      961 ctataataac tactcgtggc aaaccatcca ggctaaatgc cggttttcca gaaagctgag
     1021 gataatgttt cttcaatgca tgaaagatca aatgatccaa tgacaagatc cctggacccg
     1081 aaataaataa aatagccatc accaccatcc agtataaata aaaacctgct actccgggcg
     1141 taaaattcaa aagaacaact attaatccaa aaattgcaac aactcgagtc gctaggccaa
     1201 gtcccaaaaa aatagccatg aatagtgaaa cattgttaaa aacgatagag gctgaattta
     1261 atggcaacca tggcatcaat agcggcagcg catcagaaga aatgagctgt atgtgttgat
     1321 tgatgagtaa aagtgaaatc attaaccaca tacgtaaaga aaataaatac aaacttgaaa
     1381 aaaattctct tgtcctatct acaaatgtca caatcaacat ggcaaacggt aaagggctgc
     1441 gactaaaccc atgctcaaac aaattatcaa gagaaagtgg acccgggcct cgcaacacat
     1501 aacccaacat taatgcaatc caaagcaaat taagatcgat aggctggtaa tagacttgag
     1561 tcatgacagc gaatccaaca ataactgccg ctccgcatcg ggtaaacaaa cccaaaagca
     1621 gggaaatccc ccctacaaac tgcgccaata tccctaacaa agcttcccat tcaggggata
     1681 gccatggaac cgggtattca tttttagcca aataaacagc agtatcccag tggttggtta
     1741 gaagtattgc agaaactaat aattgctggg ctatccatat tcgaaaagcc aaatcaataa
     1801 caggccatcc aatccgacca agaaagtcaa cagtgtccat aaaggtgtca aagcacctcg
     1861 ctgtatttct tgaaaacgaa cgattttttt gagttatcgg tgcccgatct tcttgctgca
     1921 tatcaaaatc cctttcaaga aagtttttaa aatatctgtg tatttctaat aactttggtt
     1981 ttaattatag ctgcaaattt ctaat
//
LOCUS       DACVWI010000332         1995 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.333, whole genome shotgun sequence.
ACCESSION   DACVWI010000332 DACVWI010000000
VERSION     DACVWI010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.333"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            60..1214
                     /locus_tag="JBH85_15030"
     CDS             60..1214
                     /locus_tag="JBH85_15030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DSD1 family PLP-dependent enzyme"
                     /protein_id="HAU0947504.1"
                     /translation="MNFVMNYLMKEKYIGLHKIELNTPCLVIDYEKLKYNLKVMQQHG
                     FEWGIGIRPHCKTHKCTQIARLQLEYGAIGISAAKLSEAEVLVSKQITNVLITSPIVS
                     EAKYSRLFNCLKSAPDLMLVVDGKDNIRMLNELGKSLNQPVYVLLDIDSGIGRTGINP
                     EVALEYGHFINSMNWLKLKGIQCYAGHLQHIQNYEERKAFSLRIMDMASRIVKSFRDA
                     NLPCEILTGTGTGTFDIDVEASEVTEIQPGSYAVMDVEYGSIGSKNNPSSFQPFKNSM
                     TLLTSVISSNRKEHATVDAGTKSIYVDPHHKPHIISHPGLVYDWGGFGDEHGKVFSCE
                     GGSHFLQNGDVLELIVPHCDPTINLYDKFYITENNVVVDIWDIDMRGKSQ"
     gene            complement(1255..1434)
                     /locus_tag="JBH85_15035"
     CDS             complement(1255..1434)
                     /locus_tag="JBH85_15035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HAU0947505.1"
                     /translation="MLSWALIFFIIAIIAAAFGFGGIAVAAAGIAKILFFLFLVMFVI
                     FLIMGLLGRRGPPPV"
     gene            1525..1893
                     /locus_tag="JBH85_15040"
     CDS             1525..1893
                     /locus_tag="JBH85_15040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947506.1"
                     /translation="MQTTKAHYSKIFFALFLFFCTGSSALFACPCFNMGFLHVAFLDD
                     KDTECRIYKEGSVVYKIEIFDKEKIASSTHTQCTLNTEHHDVFMNYDFHYLDDHGDCI
                     REILDACNKLKINSLHMDDE"
BASE COUNT          666 a          335 c          396 g          598 t
ORIGIN      
        1 aaaaaatagt ttaataaaag cttaaattcc taagcaattt atgtcataaa acgcatttat
       61 tgaactttgt gatgaattat ctcatgaaag aaaaatacat cgggcttcat aagatagaac
      121 taaatacccc atgccttgtg attgattatg aaaagctgaa atacaactta aaagtgatgc
      181 aacaacatgg tttcgaatgg ggcataggaa taagaccgca ttgtaaaact cataaatgta
      241 ctcaaatcgc acgtttacaa cttgaatatg gggcaatagg gatttctgcc gccaaactat
      301 cagaggctga agtattggta tccaaacaaa tcacgaatgt cttaattact tcacccattg
      361 tatcggaagc caagtattca agattattta attgtcttaa atcagcgcct gatttaatgc
      421 tggttgtaga tggcaaggat aatattcgca tgcttaatga gcttggaaag tcgctaaacc
      481 agccagttta tgtcttgctt gatatcgatt caggcattgg tcgaacgggc attaatcccg
      541 aggtagcttt ggaatatggt cattttatca atagtatgaa ttggcttaag ctaaaaggaa
      601 ttcaatgtta tgcaggccac ttgcaacaca ttcaaaacta tgaagagaga aaagcgtttt
      661 ctctacgtat tatggatatg gccagcagga ttgttaagag ttttagagat gccaatctcc
      721 cttgtgaaat attaactggc accggaactg gtacttttga tattgatgtc gaagcaagtg
      781 aagtaacaga aatccagcct ggctcatatg ctgtaatgga tgttgagtat ggttcaattg
      841 gttcaaaaaa taacccatca agctttcagc catttaaaaa ctcgatgact cttttaacaa
      901 gtgttataag cagtaatcgt aaagagcacg ctactgttga tgctggaacg aaatcgattt
      961 atgtcgatcc tcatcataaa ccacatatta ttagtcatcc cggactggtt tatgattggg
     1021 gtgggtttgg agatgagcat ggcaaggtat tttcttgtga aggcggaagt catttcctgc
     1081 aaaatggcga tgttttagag cttatcgttc ctcattgtga tccgacaata aacttgtatg
     1141 ataagtttta tatcacagaa aataatgttg ttgtcgatat ttgggatatc gacatgcgtg
     1201 gaaaatcaca ataatctata ctatttaacc aggtgtttga gcttcatatt tttgctagac
     1261 aggaggaggg ccacgacgcc cgagtaatcc cataataaga aatatgacaa acatcaccaa
     1321 aaatagaaag aataatattt ttgcaattcc agcagcagcc actgcaatgc cgccaaatcc
     1381 aaacgcggct gcaataattg caatgataaa aaaaataagt gcccaactta acataacagc
     1441 tccctgtaaa gattatcctg ttcattaaat tatagactaa taatggtcta caattagaca
     1501 aaagacagtt aatcagggaa gaatatgcaa acgactaaag ctcactatag caagatattc
     1561 tttgccttat ttcttttttt ctgcactggt tcaagcgcat tatttgcctg cccttgtttt
     1621 aacatgggct ttttacacgt agcctttttg gatgataaag atacggaatg tcgcatatat
     1681 aaagaaggaa gtgtcgttta taagatcgag atttttgata aggaaaaaat tgcgtcaagt
     1741 acccataccc aatgtacgct gaatacggag catcatgatg tttttatgaa ttatgatttt
     1801 cattacctcg atgatcatgg ggattgtatc agagaaatat tggacgcatg taacaaactg
     1861 aaaataaact ctttgcatat ggatgatgag taagataaag caaggtgaaa taggactggt
     1921 attcaatgat taggacgctc gcccggatta taattaagat taacccgggt taggcttatc
     1981 aatttttagt ttgaa
//
LOCUS       DACVWI010000333         1978 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.334, whole genome shotgun sequence.
ACCESSION   DACVWI010000333 DACVWI010000000
VERSION     DACVWI010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.334"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            86..484
                     /locus_tag="JBH85_15045"
     CDS             86..484
                     /locus_tag="JBH85_15045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947507.1"
                     /translation="MKTKIIFKSISSLLLGLLLVSCSNELPPGEYDANEIGKIKKVIP
                     GVIISKRPVNLHRQNADANLHVKGGADSNLIDGGYNRTHGVEYVIKLNSGTIISVVQA
                     EDLKLKNKQKILVIYGRHTRVVADNGSDVY"
     gene            complement(618..1466)
                     /locus_tag="JBH85_15050"
     CDS             complement(618..1466)
                     /locus_tag="JBH85_15050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HAU0947508.1"
                     /translation="MIPWNAYVRLLRLNKPIGILLLWYPTAWALWMANQGFPSIDLLM
                     IFLLGTVFMRSAGCVINDIADRHIDRHVARTQFRPLTAGEVSLSEAFILLFILLCASL
                     LLLLKLPINCFYFAVISVLITFLYPFCKRFLNAPQLILGLAFSMGIPMAFIASGKNLN
                     SDFIVLFLINFSWIIAYDTMYAMTDKADDLKIGVKSTAIYFASYDRLIIALLLIFLHS
                     LWLVWAINKNAEWFFYLLWCTAAGILTYQLKLIYARIPKNCFKAFLVSGYYGLVMWFA
                     VGLALI"
     gene            complement(1463..1978)
                     /locus_tag="JBH85_15055"
     CDS             complement(1463..1978)
                     /locus_tag="JBH85_15055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003636980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HAU0947509.1"
                     /translation="MLIADTKGPGLLKNWLEYQDSLTDKLKAITGNAELERLSQNWSI
                     PNWWDKYVLCIPDKSILQREIVMKNQGIIYWYARSVIPQSCYALKPEFFNRLENESIR
                     NLIFDESSVRRLPILCYPVDQLNLEFHWVKKYISAEYSQMWVRFTELVFQEKSSFYLV
                     EILLPELENLL"
BASE COUNT          714 a          357 c          322 g          585 t
ORIGIN      
        1 gaataaaaat taattaataa ttttaagaat ctcagttaga ataactagtc atagtgaatt
       61 aattagcatt ggagtttaaa ttatcatgaa gactaaaatc atatttaaat ccatttcatc
      121 attactattg ggtttgctac ttgtaagttg tagcaatgaa cttcctcccg gtgaatatga
      181 tgcaaatgag ataggcaaaa taaaaaaggt tattccgggt gtgattattt ccaaacgacc
      241 agttaattta catcgtcaaa acgctgatgc caatctgcat gtaaaaggcg gtgctgattc
      301 taatttgata gatggtggtt ataatagaac acatggtgtc gaatacgtca tcaagttaaa
      361 ctctggcacc attatttcag tggtacaagc agaagacttg aaattaaaga acaagcaaaa
      421 aattctggta atttatggaa gacacactcg agttgtagct gataatggaa gcgatgtata
      481 ttaattagcc ttcctgtttc aaaatatggg ttggtgttgg attttttctt ctaaagcctg
      541 tcttatgaag gaattttccg acacccataa tcatttggca caacaaattt tctattaggg
      601 ttgagaggac atattattta aatcaatgct aatccaacgg caaaccacat tactaatcca
      661 taataaccac tcactaaaaa tgctttaaaa caatttttag gtattcttgc ataaattaac
      721 tttagttgat aagtcagtat tccagccgca gtacaccata acaaataaaa aaaccattct
      781 gcgttcttat ttattgccca taccaaccat aaagaatgca gaaaaatcag taacaaagca
      841 ataattaatc tatcataact tgcaaaatat attgcagtcg atttgactcc tatttttaaa
      901 tcatcggctt tgtcagtcat cgcatacatc gtgtcataag cgataatcca ggaaaaatta
      961 attaaaaaca atacaataaa atcactattt aaatttttcc ctgaggcaat aaatgccata
     1021 ggaataccca tggaaaaagc caaacctaat atcagttgtg gagcattcaa aaatcgttta
     1081 caaaatgggt ataaaaaagt aattagcacg gaaataaccg caaaataaaa acaattgatt
     1141 ggaagtttta ataataaaag caatgaggca caaagtaata taaacaataa aataaatgcc
     1201 tcagacaagc tgacctctcc agcagtcaag gggcgaaatt gggttctggc tacatgccta
     1261 tcaatatgcc tgtcagcaat atcgttaata acacaacctg cggaacgcat aaatactgta
     1321 cctaataaaa aaatcataag caaatcaata gaaggaaagc cctgatttgc catccaaagt
     1381 gcccatgcgg tgggatacca aagtaataaa attcctattg gtttatttaa gcgtaataat
     1441 ctgacatagg cattccaggg aatcataata aattttccag ctctggtaac aagatttcaa
     1501 ccaaataaaa agaactcttt tcctgaaata ctagctccgt aaacctgacc cacatttgag
     1561 agtattcagc gctaatgtat tttttaaccc aatgaaactc aagatttaat tgatctacag
     1621 gataacaaag tattggtaac cgtctcacac tactttcatc aaaaatgaga tttcgtattg
     1681 attcattttc caaacggttg aaaaactctg gcttaagggc ataacacgat tgtgggataa
     1741 ccgatcgcgc gtaccaatag ataatccctt gatttttcat aacaatttca cgttgaagaa
     1801 tgcttttgtc cggtatacac agaacatact tatcccacca atttgggata gaccagttct
     1861 gagataaacg ttccagctcc gcattaccgg ttattgcttt tagtttatct gttaaggaat
     1921 cttggtattc taaccaattt ttgagcaatc ctggcccttt ggtatcggca atcagcag
//
LOCUS       DACVWI010000334         1975 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.335, whole genome shotgun sequence.
ACCESSION   DACVWI010000334 DACVWI010000000
VERSION     DACVWI010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.335"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(112..>1975)
                     /gene="lem7"
                     /locus_tag="JBH85_15060"
     CDS             complement(112..>1975)
                     /gene="lem7"
                     /locus_tag="JBH85_15060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem7"
                     /protein_id="HAU0947510.1"
                     /translation="KEAKKGHFNPVKAIIELKIIPNINITDPDGHTAFFYCILESKKK
                     RFSFNPEELGAVDVILSVRDKEILELIELVDATILAMEDKNEEKLVKLRRVFTDSIDK
                     IPEALIEDCLSRAIESNDVKMIQLLLPVCNPDLKFLMLGKVNSVEAGMLLIEHFISTG
                     FVIPEARSLEGYAHRLGLNEYTAGAEQANRFLLHAVAGFVNRTDNSKDFKTVLRALQK
                     TVLLNGIANVEVARKILYQTYLEGEPLLLTVGWTQHGVGLSILWDKESNKTYLVFSNR
                     GQGGIASCLNDKGLIKKEEPKAGSVIYEIDGKLDEDFFSHFEIGENNLGLFRYGKKAF
                     EKDIKTCLKDARVLPPFIFAAAQNYATCGYVNTKQSIRGLLCVFAMTRGDSLSEELID
                     KMSRQYKEFTTHDRNVACSELIEDFQRKIKFDSRYIQKEYQDFIVKLILSHCTSDKPE
                     DIERTQRLFVVLPEEIQEKLAYLIPCHIVARKADKSSTLQNLSLFKHQEEPSSQNDCF
                     LHRPIGVIPDSVDNLLNKYHEMNTLLKFLESQGYTEEDIPKIVLENNSVRIHTKSDRD
                     FKYKVKDLFPKDIQIVNVQGRYEFILKDLTEVSYVLNKLKGQTPANNSDPDFGL"
BASE COUNT          600 a          423 c          301 g          651 t
ORIGIN      
        1 actttaaaaa tatgggttcc actcagatct gatagctttc aaagcaccac atacagaata
       61 acatagttaa aatcctttca agaaatttaa aaactgactc atgaaaaaat attatagacc
      121 aaaatccgga tcgctattgt tcgctggtgt ctggcccttt aatttattta atacataact
      181 gacttccgtc agatccttga gaataaactc atatcttccc tgaacattaa caatctggat
      241 atctttggga aaaagatctt ttactttata cttaaaatct ctatcagact tagtgtgaat
      301 tcggactgaa ttattttcca aaacaatttt cggaatatct tcttctgtat aaccttggga
      361 ctctaaaaat ttaagtagtg tattcatctc atgatattta ttcagtaaat tatccacgga
      421 atcagggatt actccgatcg gcctatgcaa aaaacagtca ttttgggagg aaggttcttc
      481 ctgatgtttg aagagactca gattttgaag ggttgatgac ttatctgctt ttcgtgctac
      541 gatatggcaa ggtatcagat aagccagttt ttcctgtatc tcttctggca acactacaaa
      601 taatcgttgg gttcgctcaa tatcttctgg tttatccgat gtacaatgcg atagaatcaa
      661 tttcacaatg aaatcttgat actccttctg aatatacctg gaatcaaact taattttcct
      721 ctgaaaatct tcaattaact cggaacaagc aacgtttcta tcatgagttg taaattcttt
      781 gtattgacga ctcattttat caattaactc ttcacttaaa gaatcgcctc ttgtcatagc
      841 aaaaacacat aataaaccgc gtatggattg ttttgtgttg acgtagccac aggtggcata
      901 attctgtgct gcagcaaaaa taaagggggg taatactcgg gcatctttaa gacatgtctt
      961 gatgtctttt tcaaatgctt tcttcccata tctaaaaaga cccaagttat tttctcctat
     1021 ctcaaaatga gagaaaaagt cttcatccag cttaccgtct atctcataga taactgaacc
     1081 tgctttcggt tcctctttct taattaaacc cttatcatta agacatgaag caattcctcc
     1141 ttgccctcgg ttagaaaata caagataagt tttattggac tctttatccc ataatatgga
     1201 taaaccaaca ccatgttgcg tccatcccac cgtaagcaat agaggttcgc cttccaaata
     1261 cgtttgatat aaaattttcc gcgccacctc cacattcgct atgccgttta atagcactgt
     1321 cttttgtagc gcccttaaaa cagtcttgaa gtctttacta ttgtccgtcc gattgacaaa
     1381 tccagcgact gcatgtaaca aaaatctatt cgcctgttcg gcaccagcag tgtattcgtt
     1441 taaccctaac ctgtgcgcat aaccctccaa actccttgct tcgggtataa caaatccagt
     1501 acttataaaa tgctctatta gtagcatacc ggcttcaacg gaattgacct taccaagcat
     1561 caagaacttt agatcaggat tacaaacagg taacagaagt tgaatcatct tgacatcatt
     1621 cgactcaatt gctcgcgaca aacagtcttc tatcaacgcc tcaggaattt tatctattga
     1681 gtcagtaaac actctcctta atttaaccag tttttcttca tttttatctt ccattgccaa
     1741 aatggttgca tcaaccagct ctatcaattc aagaatttct ttatcccgaa ctgataaaat
     1801 aacatccact gctcccaact cttcaggatt aaaggaaaat ctctttttct tgctttccaa
     1861 aatacagtaa aaaaatgctg tatggccatc ggggtcggta atatttatat ttggtataat
     1921 cttaagttct ataatcgctt tgaccgggtt aaagtgacct tttttagctt ccttt
//
LOCUS       DACVWI010000335         1972 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.336, whole genome shotgun sequence.
ACCESSION   DACVWI010000335 DACVWI010000000
VERSION     DACVWI010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.336"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            6..1718
                     /locus_tag="JBH85_15065"
     CDS             6..1718
                     /locus_tag="JBH85_15065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018577541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HAU0947511.1"
                     /translation="MFVVAMLTSSYATADTLYEAVQYGMIANPDILLNTAKGLSAKQA
                     IDKAKGGLYPSIDVTGGFGRQRSINPTSAAIDDSPSTTLNIVESAVELRQRLFAGGGI
                     INEVKRNQYLTEAQKWKTQGIAEDLALEITKNYFAVLLHERLYAYSIENLKAHKAVFK
                     MIKERATAGITRTAEVDQANARLALAEANKISALADLQEVKINYAKTVGKWPENLQVP
                     HVPARKSLPNNLARIIEKGLDNHPTVKSSYADIKEAKAQYDVARAAYYPEVNLVLNSS
                     KNKNLGGLAGPNDSDTVAVRMNYNAFRGGADAARIRETAYQVQEAYETKNRTLLELKE
                     TIRLAWNAYVASALRIQPLKQHVTASRKTRTAYQDEFKVGKRTLLDLLDSQNEYYESQ
                     IELARAENDEILSRYRILNGMGCLLKYLNLRLPVNVVNNDVFSSAQTNILLNRKMDEI
                     PYPNNTDNPMVLTHPVKNMEKTRLTKSMVDKNTTYPQQITPKLWYISAGSFRDRNNAV
                     ALVKRLNGLGFTAFMSPYKDLLSVFVGPYEYRGHAGNGMERLKELAHVEGVLVTFKEP
                     PKKA"
     gene            1669..>1972
                     /locus_tag="JBH85_15070"
     CDS             1669..>1972
                     /locus_tag="JBH85_15070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947512.1"
                     /translation="MLKESWLLSKSRPRRLSVIAKRFQNILLESLRYRLVLSIWTGLV
                     LCYVTSFSTQAAPLISVEKIQKLAQSYQGDTRKRFTAWANLIHSLKKKPVKIQLEKV"
BASE COUNT          624 a          366 c          442 g          540 t
ORIGIN      
        1 aggcgctgtt tgtagttgca atgcttactt cttcctacgc cactgcagat actctttatg
       61 aagcagtaca atatggcatg attgctaacc cggatatact acttaatact gcaaaaggtt
      121 tgtcagcgaa acaggcaatt gataaagcaa agggtggttt atatccttct attgatgtaa
      181 ctggcgggtt tggacgacaa aggagtatta acccgacatc tgcagcgatc gatgattctc
      241 ccagtactac tctcaatata gtggaatcgg ccgtggagtt aaggcagcga ttgtttgctg
      301 gtggagggat aattaatgaa gtgaagcgaa accaatacct tactgaggcg caaaagtgga
      361 aaacacaagg tatcgctgaa gatttggcct tggaaattac caaaaattat ttcgctgtat
      421 tactgcatga acgtttgtat gcttactcca tcgaaaatct taaagcacat aaagcggttt
      481 ttaagatgat aaaagagcgg gctactgccg ggattaccag aacggcggaa gtcgatcagg
      541 ctaatgcaag gctggctctc gctgaggcta ataaaataag tgcattggct gatttgcaag
      601 aggtgaagat caattatgca aaaacagtag gtaaatggcc agagaatctc caagtgcctc
      661 atgtcccagc aagaaaaagt ttgcctaata atttagccag gattatagaa aaaggattgg
      721 ataatcaccc aacagtgaaa tcaagttacg ctgatattaa agaagcaaag gctcagtacg
      781 atgtcgccag agcagcctat taccctgagg ttaatctggt tttgaatagc tcaaaaaaca
      841 agaacctggg tggtctggca ggtcccaatg actccgacac ggtggctgta agaatgaatt
      901 acaatgcatt tcgtggtggt gctgatgctg ctcgtatacg agaaacggct tatcaagtcc
      961 aggaagctta tgaaacaaaa aatcgaacat tgctggaatt gaaagagact atcaggttag
     1021 cctggaatgc ttatgtagcc tctgccttac gcatccaacc tttaaagcaa cacgttacag
     1081 cttcgagaaa aacacgtacg gcctatcaag atgagtttaa ggtaggtaaa aggacgcttc
     1141 ttgatttact cgattctcaa aatgaatatt atgaatcaca aattgaattg gcccgcgcag
     1201 aaaatgacga gatactttcc cgctatcgaa tcctgaatgg aatgggttgt ttattaaaat
     1261 atttgaattt gaggttgccg gtcaatgtgg ttaataatga tgtattctcg tcggctcaga
     1321 ccaatatttt attgaacagg aaaatggatg agatccctta tcccaataat acggataatc
     1381 ctatggttct cactcatcct gttaagaaca tggagaaaac tcgtttaact aaatcgatgg
     1441 tagacaaaaa cactacttat cctcagcaaa taacgcccaa gttatggtat atctcagcag
     1501 gctctttcag agatagaaat aatgctgtag ctttggttaa acggttaaat ggattaggct
     1561 ttactgcctt catgagccct tataaagatc ttctgtccgt ttttgttggt ccttatgaat
     1621 acagaggtca tgcgggtaat ggaatggaaa ggctaaagga attggctcat gttgaaggag
     1681 tcctggttac tttcaaagag ccgcccaaga aggcttagtg ttatagccaa gagatttcag
     1741 aatattcttt tggaatctct tcgttataga ttggttttat caatttggac tggtttggta
     1801 ctttgctatg taacaagttt ttccactcaa gccgcgcctt taatcagtgt ggaaaaaatt
     1861 cagaaattgg cgcaatccta ccagggggac acccggaaac ggtttaccgc atgggcgaat
     1921 ttaattcact cacttaaaaa aaagccagta aaaatacaac tggaaaaagt aa
//
LOCUS       DACVWI010000336         1958 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.337, whole genome shotgun sequence.
ACCESSION   DACVWI010000336 DACVWI010000000
VERSION     DACVWI010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.337"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            24..94
                     /locus_tag="JBH85_15075"
     tRNA            24..94
                     /locus_tag="JBH85_15075"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:56..58,aa:Gly,seq:ccc)
     gene            complement(152..772)
                     /locus_tag="JBH85_15080"
     CDS             complement(152..772)
                     /locus_tag="JBH85_15080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947513.1"
                     /translation="MDIKKLKKAASNFLERYPGGFYHPEMIEMGKKHKMDKMVALAQG
                     SFAKQNFKNPDEITNSMLKIVTQSSLISIFEKPKFRDFIKRTPPNDKVLIAKGLKELL
                     YGNEQEGFEELLFQFQREKLAKWTLMTIFQAYFNPEVDVFIKPTTTKNIIKELNLDIV
                     YNPTPSWEFYESYRNIINQMKTKIEKSLAPSNAAFCGFLMMSLDDR"
     gene            complement(847..1671)
                     /gene="mutM"
                     /locus_tag="JBH85_15085"
     CDS             complement(847..1671)
                     /gene="mutM"
                     /locus_tag="JBH85_15085"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HAU0947514.1"
                     /translation="MPELPEVETTKQGIKPHLEGRMITAVQVRNRKLRLPVPLNLNEL
                     CQGKHITAITRRGKYILLHMDKGYLLIHLGMSGHLRIVSQTANPQKHDHVDLHINNGL
                     ALRFCDPRRFGLFIYIDENPYQHPLLAHLGPEPLSDDFNSEYLLRKAANKSQSIKSFI
                     MDSQIVVGIGNIYAAESLFLAKIHPNTSAKKITTEEFNSLTGHIKKILESAIEAGGTT
                     LRDFYSSDGKPGYFRFALKVYGRKNLPCLVCENKIETVVIAGRHSAFCPHCQPIIT"
     gene            complement(1671..1901)
                     /locus_tag="JBH85_15090"
     CDS             complement(1671..1901)
                     /locus_tag="JBH85_15090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947515.1"
                     /translation="MSDKVQKLIENIVPFIVIGVGIAIVIALLFMFFYVAIWGVIIGG
                     ILWLGALAKEYFFPSKSSQKEQGRIIEHDDKK"
BASE COUNT          591 a          367 c          360 g          640 t
ORIGIN      
        1 gacgaaaggg ttcgtgagtt tttgcgggtg tagttcaatg gcagaacctc agcttcccaa
       61 gctgatggcg tgggttcgat tcccatcacc cgctcaataa aagaatgtga catgtcttca
      121 tagagcccat caagcgatac tcatagaaaa tttaacgatc atccaggctc atcattaaaa
      181 aaccacagaa tgccgcattg ctgggcgcta gtgatttttc aatttttgtt ttcatttggt
      241 taatgatatt cctataagat tcatagaact cccaggaagg ggttgggtta tatacaatat
      301 caaggttcag ttctttaatg atatttttgg ttgttgtagg ttttataaac acatccactt
      361 caggattgaa gtaagcctga aaaatagtca ttaaagtcca cttcgccagt ttctctcttt
      421 gaaattgaaa aagaagctct tcaaagcctt cctgttcatt tccatacaaa agttctttta
      481 atccttttgc aataagtact ttatcgtttg gaggagttct tttaataaaa tctctaaatt
      541 taggtttttc aaatattgaa atcagagatg actgagtaac aattttcaac atggaatttg
      601 ttatttcatc agggttttta aaattttgct tggcaaaact cccttgagcc aaagcaacca
      661 tcttatccat tttatgtttt ttacccattt caatcatttc agggtggtag aaaccgcctg
      721 gatatctttc cagaaaatta gaggctgctt ttttaagttt tttaatatcc ataaattaac
      781 cttttgtcac aacaacagaa tcaattaaga aacaaaaatg gttccaggtg gccattatta
      841 aacttattat gtaatgattg gctggcaatg tgggcaaaat gcggagtggc gcccggcaat
      901 cacgacagtt tctattttat tttcacatac caaacagggg agatttttcc tgccataaac
      961 ctttaaagca aaacgaaagt accctggttt accatcagaa gaatagaaat cacgaagtgt
     1021 cgtccctcca gcctctatgg cagattcaag tatctttttg atgtgaccag tcagagaatt
     1081 gaattcttct gtagttatct tttttgcaga ggtatttgga tggattttgg caagaaaaag
     1141 actctctgcc gcataaatat tccctatccc gacaacaatt tgactatcca taataaatga
     1201 cttgatggat tgcgatttat tcgcagcttt acgtaataag tactcgctat taaagtcatc
     1261 agacagaggt tccgggccta aatgtgccag cagtgggtgt tggtaaggat tttcatcaat
     1321 gtaaataaat aagccaaatc ttctaggatc gcagaatctg agagcaagcc cattattaat
     1381 gtgcagatca acatgatcat gtttttgagg atttgctgtc tgggatacga tacgcaaatg
     1441 tccggacatt ccaagatgga tgagaagata acctttatcc atatgaagta agatgtattt
     1501 tcctctacgg gtaatagctg ttatatgctt tccttggcat aattcattca ggtttagagg
     1561 tactggtaat ctaagttttc gattacgcac ttgcactgcg gtaatcatac ggccttcaag
     1621 atggggttta ataccttgct ttgttgtttc gacttcgggt aattcaggca ttatttttta
     1681 tcatcatgtt ctataattct tccttgttct ttctgggatg atttgctggg gaagaaatat
     1741 tccttagcta aggccccaag ccagagtatt ccaccgatga ttacgcccca aatggccaca
     1801 taaaaaaaca tgaacaataa ggctataact attgcgatcc caacaccaat cactataaaa
     1861 ggcacaatat tttcaatcaa tttctgaact ttatcgctca tgtctatatc ctgataaaat
     1921 aagatgagta aatttattat cgactacatc atgaaatc
//
LOCUS       DACVWI010000337         1944 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.338, whole genome shotgun sequence.
ACCESSION   DACVWI010000337 DACVWI010000000
VERSION     DACVWI010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.338"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..743)
                     /locus_tag="JBH85_15095"
     CDS             complement(<1..743)
                     /locus_tag="JBH85_15095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HAU0947516.1"
                     /translation="MNFVTFQFVVFLVITVIVFMMMSPYYRKYFILLCSYFFYGTWSV
                     PLISVILFSTSVDYYLGKKIHESHSQTHKKLYLTLSILVNCSILVYFKYMNFFISSID
                     AIGFSLGATQLLLNPMHIILPLGVSFYTFEAISYIVDIYRGEKPASSWLNYNFYIMYF
                     PHLISGPIVRYKELHAQYESKIELPETSRLKEGFQLLLYGFIFKLIIADSMASISDPL
                     FDKYQTIGHLESWLASIAFTIQIYFDFLG"
     gene            complement(740..1915)
                     /locus_tag="JBH85_15100"
     CDS             complement(740..1915)
                     /locus_tag="JBH85_15100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1574 domain-containing protein"
                     /protein_id="HAU0947517.1"
                     /translation="MLFMSDIHCEKSYRSKLLKQGLLGVLILCLVFLFLESFSRWIAA
                     TSTAPFGESIRNDQKMIVSDSIRQGIVAIGDSIIARSFYPELFSSLLAKNFSKPYEVY
                     NIGVEGSGIIHHRAHLRYLLKRNVKPDFVIMNVSVHNLNLNYFAHDSNEHIIEQRYED
                     HNSLDYYNRCFTVNKQTLSSTLYCKIAKYSYFFRLVHYYHQQVNNSLQSLLHTQRLRT
                     ENLIIKYPAISRQGFSPIFGSLAEDTISTPRMFEFLRHEYRSAFANFKLTTEVLDSII
                     DDLNNNSIKVILVLAPVYHPVTRKVYDEFNLPSNGAIVSTLENYALKKNIAFINLFEE
                     CQDPVYFQDPVHPNIYGAVKITTLLSQKIINKQFVGPDGYLDKELFQYLKSNNENKA"
BASE COUNT          707 a          339 c          312 g          586 t
ORIGIN      
        1 tatccaagga aatcaaaata aatctgtatg gtaaatgcaa tactggccaa ccaggattcc
       61 agatggccaa ttgtctgata cttatcaaac aagggatctg agattgaggc cattgaatcg
      121 gctatgatca atttgaaaat aaagccataa agtaataact gaaacccctc ttttaaacgc
      181 gaagtttccg gtaattcaat tttactttca tattgagcat gcagttcttt ataacggaca
      241 atcggtcctg aaatcagatg cgggaaatac ataatataaa aattatagtt taaccagcta
      301 ctagccggct tttcccctct atagatgtct acgatataac tgatcgcctc aaaagtgtaa
      361 aaagaaacac cgagaggcaa aataatatgc ataggattta acaaaagttg ggttgctccc
      421 aaactaaagc caatagcatc aatactggaa ataaaaaaat tcatgtattt gaaataaacc
      481 agaatggagc aattaaccaa aatggataaa gtcaaataga gttttttatg agtttgggaa
      541 tgactctcat ggattttttt tccgagatag taatcaaccg aggttgaaaa taagatgaca
      601 ctgattaatg gaacgctcca ggtaccgtaa aaaaaatagc tgcaaagcaa aataaaatat
      661 ttccgataat agggagacat catcataaaa acaatgaccg taataactag aaaaacaacg
      721 aactgaaaag tgacaaaatt catgctttgt tctcattatt gctttttagg tattgaaaca
      781 attctttatc caaatacccg tcaggcccta caaattgttt gttgataatt ttttgcgata
      841 acaatgtggt tatctttaca gcaccataga tattaggatg tactggatcc tggaaataaa
      901 caggatcctg acattcctcg aataagttta taaaagcaat atttttcttt aaagcataat
      961 tttcaagcgt actgactata gcgccattag atggcaagtt gaattcgtca taaaccttac
     1021 gagttactgg atggtaaact ggcgccaaga ccaagatcac tttaattgaa ttgttattca
     1081 gatcatcaat aatgctgtct aaaacttcag tagttaactt aaaatttgca aatgcactcc
     1141 tatattcatg tctcaaaaat tcaaacattc taggcgtgct tattgtatcc tcagcaagac
     1201 tgccaaaaat tggtgaaaaa ccttgtctag agattgctgg atatttgatt atcaaattct
     1261 cagttctcaa tctttgtgta tgcagcaaag attgcaaact attgttaact tgttgatggt
     1321 aataatgcac taaacgaaaa aaataagaat acttcgctat cttgcaataa agcgttgatg
     1381 aaagtgtttg cttatttact gtaaaacaac ggttataata atccaaggaa ttatgatctt
     1441 catatctctg ctctatgata tgttcattac tatcatgggc aaaataattc aaattaagat
     1501 tatggacaga aacattcata atcacaaaat ctggtttgac attccttttc aataaatatc
     1561 ttaagtgtgc ccgatgatgg ataattcctg aaccttccac tcctatgtta tacacctcat
     1621 aaggctttga aaaattttta gctaataaag aagaaaaaag ttccggataa aaacttctgg
     1681 caattatgga atccccaata gcaacaatac cttgcctgat ggagtcactc acaatcattt
     1741 tctgatcatt cctgatactt tcaccaaaag gtgctgtact tgtagctgct atccatcttg
     1801 aaaaagattc aagaaacaaa aaaaccaggc ataaaattaa tacaccaagc aaaccctgtt
     1861 tcagaagttt tgatctgtag cttttttcgc aatggatatc agacataaat aacagaaatt
     1921 aattttacaa tattcgaatt tgcg
//
LOCUS       DACVWI010000338         1942 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.339, whole genome shotgun sequence.
ACCESSION   DACVWI010000338 DACVWI010000000
VERSION     DACVWI010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.339"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..432
                     /locus_tag="JBH85_15105"
     CDS             <1..432
                     /locus_tag="JBH85_15105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAU0947518.1"
                     /translation="AVFPLVGKLSDKINREKIVIFASVGLLILSQPFFYVLSHHDIYE
                     LLLGQALIAIPAGAYYATVPVMLAEMFPIKLRCTVLSILYSTAASLSAGLAPLVSLIL
                     VKKTGIASSPSILVFTLVASAFITMYVKHSNNRQKYSQLPA"
     gene            623..>1942
                     /locus_tag="JBH85_15110"
     CDS             623..>1942
                     /locus_tag="JBH85_15110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010652881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947519.1"
                     /translation="MNYIPRRIEIIDDSDKKKICSDADFFAMDGPLILLGEPGSGKST
                     LLREFKERTNSICYDAVSIMLSPAIEAVSKPSKIIIDGIDEVTVYKKELISDNILSKI
                     SHHHSPNFILACRTADWKDAVNSKIIQNRWNKKPILGHLLSLNDREIIEFINNEGKEI
                     DGNDFFIEAQKRGVVDLLRNPNNLSLFLKAHQQNGGWPSSKLDLYENACLTLLEEHSE
                     IHASIKTPPNIHKLIETAGCICAQLLLSGKIGVSINNKDLSAPKIEEFFDENSSNELM
                     QHILSTMLFRSDSNNILVPCHRTVAEFLAAKWLGNKLNNKLSIRRLEALLYGDRYIVP
                     SALRGLHAWLAVFCQPERNSFINRDPYGFLKYSDPTILTTEQLKFLLKSLQKIAKDDP
                     YFRAEDWHISVGDGLLRPELRDDVLSILHTKDTPFQLSYLIIQSIEHT"
BASE COUNT          644 a          316 c          332 g          650 t
ORIGIN      
        1 gctgtatttc ctttagttgg aaaactatct gataaaatca atcgagaaaa aattgtgatc
       61 tttgctagtg ttggtttatt gattctttcc cagccatttt tttatgtttt atcgcaccat
      121 gatatttatg agctcttatt aggacaagca ttaattgcaa ttcctgctgg agcttattat
      181 gcaacagtac cggtgatgtt agctgaaatg tttccgatta agttacgatg cactgtttta
      241 tcaattttat attcaactgc tgcaagttta tcagctggac ttgctccgtt agtttcttta
      301 atactggtta aaaaaacagg tattgcatca tcgccttcta tattagtatt tactttggtg
      361 gctagtgctt ttattactat gtatgtgaag cattctaata atagacaaaa atactctcag
      421 ttacctgcat aaaatagttt aacgattaca tatgctaaat ttgcacactc cccccattat
      481 tttttatatt ggtacattca ttggttaaag ctgacaaaac ctattatatt attcaatcat
      541 cgcttgggtg gtgatatgag catgttatag ataaaatata cccaaaatta agagcctaca
      601 aagccaagac agagagcact gaatgaacta tattccaaga cgaatagaaa ttattgatga
      661 ttcagacaag aaaaaaattt gctctgatgc ggattttttt gctatggatg gtcctttaat
      721 cctactaggt gagcctggca gtgggaagtc tactctatta agagaattca aagaaagaac
      781 aaattctatc tgttatgatg cagtatccat aatgttatct ccagcaatcg aagcagtttc
      841 taagccctct aaaattatca ttgatggaat tgatgaggta acagtatata aaaaagagct
      901 tatatccgat aatattttat caaaaatctc gcatcatcat agcccaaact ttatattggc
      961 atgtcgcact gctgactgga aggatgcggt aaatagtaaa atcattcaaa acagatggaa
     1021 taaaaaacca attcttgggc atttattatc cttaaatgac cgagaaatta tagagttcat
     1081 taacaacgaa ggtaaagaaa tagatggtaa cgactttttt atagaagctc aaaaacgagg
     1141 tgttgtagat ttactaagaa atcctaataa tttgtcatta tttttaaaag cacatcaaca
     1201 aaatggtgga tggccgagct ctaaattaga tttgtatgaa aatgcttgtt tgactcttct
     1261 tgaggaacat agtgaaattc atgcatctat taaaacacct ccaaatatcc ataagctaat
     1321 tgaaacagct ggttgtattt gtgctcaact tttgctttca gggaaaatag gcgtatctat
     1381 taataataaa gatttatctg cacctaaaat tgaagaattt ttcgatgaga atagttctaa
     1441 tgaattaatg caacatatct tatcaacaat gttattccgt tcagattcta ataatatttt
     1501 agtgccatgc catagaacag tagcagaatt tttagctgca aaatggctcg gcaataagtt
     1561 aaataataaa ttatctatac gacgtctaga agcgttgctt tatggtgata gatatatagt
     1621 tccttctgct cttagaggac tccatgcttg gcttgcagtt ttttgtcagc cagaaaggaa
     1681 tagttttatt aaccgagatc cttacggatt cttaaaatat agtgatccca caattttaac
     1741 tacagaacag ttaaaatttc ttctgaagtc tttacaaaaa attgcaaagg acgatcccta
     1801 tttccgagcc gaagattggc atatcagcgt gggagacggt ctgttaagac ctgagttgcg
     1861 agacgatgtt ttaagtattt tacatactaa agatacgccg tttcaattat cttatttaat
     1921 tattcaatcc attgaacata cc
//
LOCUS       DACVWI010000339         1941 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.340, whole genome shotgun sequence.
ACCESSION   DACVWI010000339 DACVWI010000000
VERSION     DACVWI010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.340"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(168..>1941)
                     /gene="lem10"
                     /locus_tag="JBH85_15115"
     CDS             complement(168..>1941)
                     /gene="lem10"
                     /locus_tag="JBH85_15115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem10"
                     /protein_id="HAU0947520.1"
                     /translation="SNNGKPNLKIEFVSEEEKSNFFKEVKKKASELGLNFPLVQGSGN
                     SLLIEASNYPINPCGCYISPGGKLAINFGKVELSHFILPKVGVKTEHAEIFKDHNTIF
                     FHKHKLPGVNSELTFIPTGTPVIVPVTKPATTSPAFFNPSKSGDSSISISAIGNVDSP
                     MIRITFQNQTEREFFLNKITDKAKSLGVNISTHPFEIKEPNMVLIKPSKYPDNKLGCY
                     ISKNKEIAINFGRTDFRDFVLSNLGVGSHLGTCPTKNETGNDTFYFHQENLSLNGPAL
                     SVNTKITKEIEKNDYLLSANGSKAIDFVWSNFLKHPYNPKLKQPDANVKAAWEKHADW
                     EHWSNMGQDWSLNTPSGLVPRPNHGIAHTLRVAQLVPVIAEFLKAYSGDPKFQKLTQK
                     EIQKAQYMMLFSVIGRENDMSWTDANHYQQAFKEAYNGQYSKHIYATFKENAQKGFLN
                     HVVTNKSSLIPSLFSDESELQYWAEALDTGKPGISSASGILMALAHDLDLMRCYDKGK
                     FNSLKMKDLVARLGGNEDAAKKLADYAHDLIVATGDRCMGYGVTQDYNYSLFGKCSLD
                     PNECLKQLQSIPKPETTLANQYGI"
BASE COUNT          586 a          370 c          334 g          651 t
ORIGIN      
        1 atccgctttc agttcagtga agtcacaata taagatcaag atagtaattt caatcgagct
       61 agtgcttatt tgttagagca atagaagcac cctttgcatt caaaggatgc taattaaata
      121 accgtacgat ttaaactggc tacagccata gtataaaaga tttaatctca aataccatat
      181 tgatttgcca aggttgtctc tggtttagga atactttgaa gctgctttag acactcattg
      241 ggatcaaggc tgcatttgcc aaaaagagag taattataat cctgagttac cccataaccc
      301 atgcatcgat ccccagtcgc tacaatcaga tcatgagcat aatcagccag tttctttgct
      361 gcatcttcat ttcctccaag ccttgcaact aaatccttca tcttcagact attaaatttt
      421 cctttgtcat agcatctcat gaggtccaaa tcatgagcca gagccataag tatgcccgag
      481 gcagaagaaa ttccgggctt accggtgtcc aaagcttcag cccaatattg aagctcgctt
      541 tcatcggaaa atagtgaagg aattaatgac gatttattgg taaccacatg atttaaaaaa
      601 cctttttgag cattttcttt gaaagtagca tagatgtgct tggaatactg tccattgtat
      661 gcttccttaa atgcctgctg gtaatgattg gcatctgtcc aactcatatc gttttcacgc
      721 ccaattactg aaaataacat catgtattgt gctttttgta tttctttttg cgttaatttt
      781 tggaattttg gatcacctga atatgctttc aaaaattcag caatgactgg tacaagctgt
      841 gcgactcgta acgtatgagc aattccatga tttggcctgg gaactaaacc cgagggagta
      901 tttaatgacc aatcctgtcc catattggac caatgttccc aatcagcatg cttttcccaa
      961 gctgctttta cattagcatc tggctgcttc agtttaggat tataaggatg ttttaaaaaa
     1021 ttactccaaa caaaatcaat ggccttggag ccattagcag atagtagata atcatttttc
     1081 tctatttctt tggttatttt ggtatttact gataatgcag ggccatttaa agaaagattc
     1141 tcctgatgaa aatagaaagt gtcgttacct gtttcatttt ttgttgggca ggtccctaaa
     1201 tgagagccta ctccgagatt agacaacaca aagtctctaa aatctgtcct tccaaaatta
     1261 attgcaattt ccttattctt tgaaatatag caacctaatt tattgtccgg gtatttagaa
     1321 ggtttaataa gtaccatatt aggttctttg atttcaaaag gatgagttga gatattgact
     1381 cctaaacttt ttgctttatc tgttatttta tttagaaaaa actctcgctc cgtttgattt
     1441 tgaaaagtaa ttcttatcat cggactatca acgtttccta tcgcactaat agaaatcgaa
     1501 gaatcccctg actttgaagg attaaaaaat gctggagaag tagtcgccgg ttttgttacg
     1561 ggaacaataa caggtgtgcc agtcggtatg aacgttaatt cagaattcac acctggaagt
     1621 ttatgtttat ggaagaaaat agtattgtgg tccttgaaaa tctcggcatg ttctgttttc
     1681 acgcctactt taggtaatat aaaatgactc aactccactt ttccaaaatt aatagctaat
     1741 ttcccacctg gggatatata acaaccacaa ggattaattg ggtaatttga agcttctatc
     1801 agaagagaat ttccagagcc ttgcactaat ggaaaattta gtcctaattc gcttgctttt
     1861 ttctttacct ccttgaaaaa attacttttt tcttcctcac taacaaattc aatttttaaa
     1921 ttaggtttac cattattaga a
//
LOCUS       DACVWI010000340         1941 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.341, whole genome shotgun sequence.
ACCESSION   DACVWI010000340 DACVWI010000000
VERSION     DACVWI010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.341"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..461)
                     /locus_tag="JBH85_15120"
     CDS             complement(<1..461)
                     /locus_tag="JBH85_15120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HAU0947521.1"
                     /translation="MDFIKRTIELARENVGHGGRPFACLIVQNGKILAEATNTVAQTH
                     DPTAHAEVNAIRIATAKLGCEHLYDCDFYILAHPCPMCLAAMYYCSPRKVIFITTRDE
                     YKTYYVDDRKYFTLENFYQEINKPWRERKMPMEHRPDKEAIEVYKMHQKKKS"
     gene            544..>1941
                     /locus_tag="JBH85_15125"
     CDS             544..>1941
                     /locus_tag="JBH85_15125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HAU0947522.1"
                     /translation="MTKKRIDRLIFSEVECNMKKCSMVIAGKPISYEKLFGTVNRIAI
                     HFQNKALSGSRIAFMLPNSLEIIAIYLACFQSGCIAMPVNRRYAPPELEKVLRDAQPI
                     YLIIEASKLFLLEKINWSATGIKKIFVLGENQNYPYFSFNELLNEPANCPKNGIDYKA
                     PAVIFYTSGSTGEPKGVVHTLSSIEAMLDSTSLALENITADDKMIICEPQCHVSGFIE
                     TFSTLSQEGTALVHDGFDMDWYLATVRHEKPTLAVHHIDTYIKLLDSGRCNTKTFQSF
                     RGIYTGGDTLPVAVQDKFLACAGKPIQVGYGMTEAIWLTVCRTPDLTQKSCIGKPVNG
                     VTLRLVNAAGEDVRCGETGEILVKGDMVMHSYWNNPEETRKAFIKGWFKTGDCGIQDE
                     QGYFYYKGRIKNIIIRNTSNIMPGEVEATIYKHPAISAAAVIGVPDEAEGEVPIAFVV
                     VKKSNQLTKEELYSFL"
BASE COUNT          612 a          360 c          380 g          589 t
ORIGIN      
        1 gatttttttt tctggtgcat tttatatact tctattgcct ctttgtccgg tctatgctcc
       61 ataggcatct tacgttctct ccatggctta ttgatctcct gataaaaatt ctcaagagtg
      121 aagtattttc gatcatctac ataataggtt ttatattcat ctctcgtcgt gataaagata
      181 actttcctgg gactacaata atacattgcg gccaggcaca tcgggcaagg atgagcaagt
      241 atataaaaat cgcaatcgta taaatgctca caacctaatt tcgctgtagc aatccgtatt
      301 gcattaactt cagcatgggc tgtaggatca tgggtttgcg ccaccgtatt ggtagcttca
      361 gcaagaattt ttccattctg aactataaga caagcaaatg gtctgccccc atgtcccaca
      421 ttctctcgag ccagctcgat agtacgcttt ataaaatcca tttttttccc atttttagcc
      481 cataattatt aattatttcc cataatataa aaagtaacaa atgaatctat ccaggaaaac
      541 ataatgacta aaaaaagaat agacaggctt attttttcag aagttgaatg caatatgaaa
      601 aaatgctcta tggttattgc aggcaaaccc atatcctatg agaaattgtt tggtacagtg
      661 aatcgtattg caattcactt tcaaaataaa gcactctctg gaagccgtat cgcttttatg
      721 ttgcccaata gtcttgaaat tatagccatt tacctggcct gttttcaatc aggatgtatt
      781 gccatgcctg ttaatcgccg ctatgcgcca cctgagcttg aaaaggtatt gcgcgatgcc
      841 caaccaattt atttaattat cgaagcaagt aaattatttt tgctagagaa aatcaattgg
      901 tcagcgacag gaattaaaaa aatttttgtc ctgggggaaa atcagaatta tccttatttt
      961 tcttttaatg aattattaaa tgaaccagcg aattgcccaa aaaatggtat agattataaa
     1021 gcgcctgcag taatttttta tacctccggt tcaacggggg aacccaaagg agttgttcat
     1081 acgctttctt ccattgaagc gatgcttgac tcgacttcat tggcactgga aaacattact
     1141 gctgacgaca aaatgataat ctgtgagcca caatgccatg taagtggatt tatcgaaaca
     1201 ttctctacat tatcacaaga aggtaccgcg ttagttcatg atggttttga tatggattgg
     1261 taccttgcga cagtgcgaca tgaaaaacca acactggccg ttcatcatat tgatacctat
     1321 ataaagttat tagactctgg acgctgtaat acaaaaacat ttcaatcatt tcgtggaatt
     1381 tatacaggtg gggatacact acctgtggca gtccaggaca agtttctggc ttgcgctggt
     1441 aaaccaattc aagtgggtta tggaatgacg gaagccattt ggctaacagt ctgcagaacc
     1501 cctgatttga ctcaaaaatc ctgtattggc aaaccggtga atggggtaac attacgcctt
     1561 gtaaacgcag ctggagaaga cgtacgttgt ggtgaaacag gagaaatact ggtaaaaggt
     1621 gatatggtga tgcatagtta ttggaataat cctgaagaaa cccgcaaggc atttataaaa
     1681 ggttggttta aaacaggaga ttgcggaatt caggatgaac aaggttattt ttattataaa
     1741 ggtcggatta aaaacattat tatccgcaat acatccaata ttatgcctgg tgaagtggaa
     1801 gcaaccattt ataaacatcc agcaattagc gcagcggctg tgattggtgt acctgacgaa
     1861 gcagaaggag aagtaccaat tgcttttgta gtagtaaaaa agagtaacca attgacaaaa
     1921 gaagaattat attctttttt a
//
LOCUS       DACVWI010000341         1925 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.342, whole genome shotgun sequence.
ACCESSION   DACVWI010000341 DACVWI010000000
VERSION     DACVWI010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.342"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(276..791)
                     /locus_tag="JBH85_15130"
     CDS             complement(276..791)
                     /locus_tag="JBH85_15130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947523.1"
                     /translation="MSNVSIRKATPLDAEAIASVHVHSWKKAYQQFIPEIVLNSLSIA
                     ERTQLWNELLNNGVTVLVLEIDNQIIGFASICTFRDDIEDNSKGEISAVYIHPNFWHQ
                     GFGKKLSLAALKNLKELGYSEALLWVLSDNSQARSFYEGIGFELNDKSKLAEFYDGGA
                     LLKEVLYKKKL"
     gene            complement(1392..>1925)
                     /locus_tag="JBH85_15135"
     CDS             complement(1392..>1925)
                     /locus_tag="JBH85_15135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947524.1"
                     /translation="SLYDSLKDYVQKPETNKLLSAIKAEFLVELYDYFVENIEDVRER
                     IENDLSTKIDYMEIQSNHIPSDNNEGNIASIEYVDPKDFKIIKDSLYHYGDDLYTFDT
                     VFLADVSVDFYIYKPDYYCLDEEFYTEDHNDHYFSAQKSIIVEFKCNIKVNILIDEDD
                     DSVTYENLEINDISFSG"
BASE COUNT          637 a          333 c          305 g          650 t
ORIGIN      
        1 gtatcaattg aatgtcaatt tttaataaat tcaaaaaatt ttacagatcc tcatcagaaa
       61 acaggacaca gattcacctt tttcttggct ttgttataat tccaataata ggcatgtctg
      121 ttttatatat ttgcgtaaga atattctgga tgtaggaaaa aaactttgat ttttgaccag
      181 agttttacaa ccagttaaga tccaaataga aaagctatat tcttttcctt acacagtcca
      241 caaacccatc attttaagaa catgatatat agagattata atttcttttt atacagcact
      301 tcctttaata acgctccgcc atcgtaaaac tccgcaagtt ttgatttatc atttaattca
      361 aagcctatac cctcgtaaaa gctacgcgct tgactattat ctgataaaac ccaaagtaag
      421 gcttcagaat agcctagttc tttcaggttt tttaacgcag cgagagacaa tttcttacca
      481 aatccctgat gccaaaaatt ggggtgtata taaacagcgc taatttcccc tttagagtta
      541 tcctctatgt catcacgaaa tgtacaaata ctcgcaaacc caattatttg attatcaatt
      601 tccaatacaa gtactgttac gccattattt agtagttcat tccatagttg ggtgcgctca
      661 gcaattgata aactattgag tactatttct ggaataaatt gttggtaagc ttttttccaa
      721 gaatgaacat gtactgatgc aatcgcctct gcatccaagg gagtagcctt tctaatagat
      781 acattagaca tgaattaatg cctcatttat ttagcttttg gtctcgaata atttaatttg
      841 ttgtaccatt tttatggtaa aagggatagt gcaccaatta attaatccct ctgtaacatg
      901 gctcaattct atagaaaaga gcagaaaagg gtcaaatcct gaacatgtat gtcttttgga
      961 ctagcgaatg gccatacaaa tcttatctat atttcttttt tctcgaaaag ccgtctctgc
     1021 caaactttga tctaagccaa gaacagactc attttttaca agattaagat ataaaccact
     1081 agtagtaacc ctagtgttta caagaggtta tggatgttat tggagtgtct tggatggtta
     1141 attggtggag gtgtcgtgtg aaaattggaa ccggttcaat tcccatattt tggagtgggg
     1201 aaatgagctt ttggcagtgg ctgcgtagta aatgatctaa aataaccatt gaaatatatg
     1261 ccaattatag agatgtaatt aagttattat caccggtaga gagtagaacc taattactaa
     1321 gctgttatcc aaatagaagt ataacaacaa caagggtcag catggaggct gcattatgag
     1381 atgtctagac tttagcctga aaaactaatg tcattaatct caagattttc atatgttact
     1441 gagtcatcat cctcatcaat taatatatta accttaatat tacatttgaa ttcaacaata
     1501 atagattttt gggcagaaaa ataatggtca ttatgatctt cggtataaaa ctcttcatct
     1561 agacaatagt aatctggctt atagatatag aaatctacag agacatccgc tagaaatacc
     1621 gtatcaaagg tatataaatc atctccataa tggtacaagc tatctttaat aattttaaaa
     1681 tctttagggt caacatattc aatacttgct atattgcctt cgttattatc acttggtatg
     1741 tgattcgact gaatctccat atagtcaatc tttgttgata aatcattttc aatgcgctca
     1801 cgtacatcct caatattttc aacaaaatag tcatatagtt cgacaagaaa ttcggcttta
     1861 atagcactta ataacttatt agtctctggt ttttgtacgt agtcttttaa agagtcatac
     1921 aaaga
//
LOCUS       DACVWI010000342         1892 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.343, whole genome shotgun sequence.
ACCESSION   DACVWI010000342 DACVWI010000000
VERSION     DACVWI010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.343"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..275
                     /locus_tag="JBH85_15140"
     CDS             <1..275
                     /locus_tag="JBH85_15140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947525.1"
                     /translation="VVLLMIKPAVFHNNNQQTQSNTQYIHSITECPQRTALMNYCSSS
                     AYYIISEEELSLGNVLSLLTFILYFLVIQSKYKSPVSPIFKPPIAH"
     gene            373..1752
                     /gene="dsbD"
                     /locus_tag="JBH85_15145"
     CDS             373..1752
                     /gene="dsbD"
                     /locus_tag="JBH85_15145"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HAU0947526.1"
                     /translation="MLFITYWDIKMRKLIDSFMILLLIFFTQAAWSYTPGFESSNPDT
                     VMHFITGNSAFVYLSAFFGLGILLAFTPCVLPMVPILSGIIVGQNSISTGKAFKLSLS
                     YVTGMAITYAGAGMLAGYMGSTIQTVMQRPVVITLFSVVFVAMALSMFGFFELKFPTS
                     LGNRLNKNNQLGKQRSYLSVGIMGVLSTLIVSPCVTAPLIGVLSYIGQNGQVIMGGLI
                     LFVMALGMGVPLLIVGAGYGTLLPKAGSWMLKIKQLFGFIMLGIAIWMLSRILNQTIT
                     HILWAGLLMVASISLGALKSQNNWRGYLAQGLGILALISGGIIFYNTAIPSVKIKQAS
                     VENSPFIKINTLNALQLQLEQAKKVRKAVFLDFSADWCGDCQEMDTKVFNQPEIQKAM
                     SDWVSIKVDISDKNAEVDSIKKAFGIYGTPTMIFFNTSGEPITQMTSVGLISLSKMLQ
                     LLEQARHLS"
BASE COUNT          537 a          308 c          386 g          661 t
ORIGIN      
        1 gcgtggtttt gttaatgata aaaccagcag tgtttcataa caataatcag cagactcaga
       61 gtaataccca atatatacat tctataacgg aatgccctca gaggacggca ttgatgaatt
      121 attgctcgtc cagtgcctat tatattattt ctgaagagga gttatctctc ggtaatgtct
      181 tatccttgtt gacatttatc ctttattttt tagttattca atcaaaatac aaatcgcctg
      241 tatccccaat ttttaaacca ccgattgccc actagagtaa atttgtcaac tttctcagta
      301 ggcttcttgc cagccctggc tatgcaagag gtccagtgta ggttacttgt actctgatac
      361 aagtatctat cgttgttatt tattacttat tgggacatta aaatgagaaa attaattgat
      421 tcgttcatga ttttattact gatatttttt actcaggcgg cgtggtcata tactcctggc
      481 tttgaaagtt ctaacccgga tactgtgatg cattttatta caggaaatag tgcttttgtt
      541 tatttgagtg cttttttcgg attaggtatt ttgttggctt ttacgccctg tgttctaccg
      601 atggttccta ttttatcagg aattattgta ggacaaaatt ctatttctac aggaaaagcc
      661 tttaaattat cactgagtta tgtgactgga atggctatca cctatgcagg agcagggatg
      721 cttgccgggt atatgggaag tacaatccag actgtaatgc aacgtccagt agtaatcact
      781 ttattcagtg ttgtgtttgt agccatggct ctttcaatgt ttggcttttt tgaattgaag
      841 tttcctacaa gccttgggaa tcggttaaat aaaaacaatc aattagggaa gcagagaagt
      901 tatctttctg ttggaataat gggagtttta tccactttaa ttgtttctcc ttgtgttacc
      961 gctcctttaa ttggtgtttt aagttatatt ggtcaaaatg gccaggtcat aatgggcgga
     1021 ttgattttat ttgttatggc attggggatg ggggttcctc tgctgattgt tggtgcgggt
     1081 tatggtactt tactcccaaa agcaggttcc tggatgctta aaataaaaca attgtttggt
     1141 tttatcatgt tgggaattgc catatggatg ttatcccgga ttctgaatca gaccattacg
     1201 cacattttgt gggcaggatt actcatggtc gccagcatca gtttaggtgc tttaaaatca
     1261 caaaacaatt ggcgtggtta tttggctcag ggattgggta ttcttgcttt gatttcagga
     1321 ggtattattt tttacaacac cgcaatacct tcagtaaaaa taaaacaagc gtctgtagaa
     1381 aatagcccat ttatcaagat taatacctta aacgctcttc aactgcaatt ggagcaggct
     1441 aaaaaagtta gaaaagcagt atttcttgat ttctcagcgg attggtgcgg tgactgtcag
     1501 gaaatggata ccaaagtatt caatcaacca gaaattcaaa aagctatgtc tgattgggtt
     1561 agcattaaag tggatatcag tgataagaat gcagaggttg attctataaa aaaagctttt
     1621 ggtatttatg gaacgccaac gatgatattt tttaatacat cgggagagcc tattactcaa
     1681 atgacttcgg ttggtttgat ttcgctatca aaaatgcttc aattgctcga gcaagcgcgc
     1741 catttgagtt gaaataatag acaatttgct accgaaattt gttcttaata atttgggtat
     1801 ggttaatatt tgataaataa atcaaattca aactgtaccc aaaatattga aaagcatgaa
     1861 tttgattctt tgctctgaga gttgcttgta ta
//
LOCUS       DACVWI010000343         1888 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.344, whole genome shotgun sequence.
ACCESSION   DACVWI010000343 DACVWI010000000
VERSION     DACVWI010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.344"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1755
                     /gene="sdeC"
                     /locus_tag="JBH85_15150"
     CDS             <1..1755
                     /gene="sdeC"
                     /locus_tag="JBH85_15150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SdeC/LaiC"
                     /protein_id="HAU0947527.1"
                     /translation="RQAKLPLREGVFDRLSHRLSLETSDNKISPERRDFLNQHVIPVL
                     QECHIALRANDMDMMQKALAKFPTDKQWSAFKSGEAVRAKAQMDVLKQQIEKKIMLQT
                     QIIPALTECGEALDKQNVTEALQALNKLPAEKEIGKVKTIGQELRGQIVGVKQELTGN
                     LEPLQRATTTPIVQDAEKIKVRYETLLTDVTKRVTDFEKIKPANLDGYNKAIADLNNI
                     QQELNLLRNEKIRMHTDKDKAVDFSDIEALDKRLQDVQSKLPTQLLEQTSKDVAKLAK
                     MPEKITFNDIKSMTSKMNNYLETLELIRNDRIKKHAGSTDPLDMSDLDGLKGQLQTYN
                     QSMADILLRAAKSSLDKIKDPATFEKESPYIKQCFDHLAELEKTLDDSDKGRKQKEDF
                     TAYKSALMDKQEKAYPEMLQLQYKSEALIMQLRDICKIHHDNLAEARRVRLQQLDSQG
                     GGLLGGLWAVTNTIGLTTDNVNIEKMQIRMKEQTLRAFKTELTNDKLNTDQVIAFLAK
                     GSPSELQEALGISKENAEQLHGLLKQLEIKTASTDKLQEIEKLIDEVSTKIGKEPVKQ
                     DHTITIDEEESDDIRYGF"
BASE COUNT          717 a          338 c          372 g          461 t
ORIGIN      
        1 aggcaagcca aattgcctct tagagaaggg gtttttgata gactctctca tcgcctttct
       61 ctggaaacca gtgataacaa aatatctccg gaacgcagag attttcttaa ccaacacgtc
      121 atccctgtat tacaggaatg ccatatcgcg cttagagcaa acgatatgga catgatgcaa
      181 aaagccttgg caaaattccc tactgataaa caatggtctg cttttaaatc aggagaagcg
      241 gttagggcca aagctcaaat ggatgtatta aagcaacaga tcgaaaagaa aatcatgctg
      301 caaactcaaa ttatcccggc tctcacggaa tgtggtgaag cactggataa acaaaatgtc
      361 acagaggcat tgcaagcgct caataaactg cctgcagaaa aagaaatagg caaggtcaag
      421 acaataggac aagagttaag aggacaaatt gtaggtgtta agcaagagct gaccggaaat
      481 cttgagcccc tgcaacgcgc taccactact ccaattgtac aagatgctga aaaaataaaa
      541 gtacggtatg aaacgcttct cacagacgtg accaaacgag tcaccgactt tgaaaaaatc
      601 aaaccagcca atcttgacgg ttataataag gccattgccg atttaaataa catacaacaa
      661 gaattaaacc ttttgcgcaa tgaaaaaatt cgcatgcata ctgacaaaga caaagcagtg
      721 gacttttctg acatagaagc gttggataag agattacaag acgttcaatc caaattgcca
      781 actcaacttt tagagcaaac gtctaaagat gttgcaaaat tagcaaaaat gccggaaaag
      841 attaccttta atgacatcaa atcaatgaca tccaaaatga ataattatct ggaaaccttg
      901 gaattgattc gtaatgacag gatcaagaag catgctggat ctaccgaccc tcttgatatg
      961 tcggatttgg atggattaaa aggtcaactg caaacttata atcaaagcat ggctgatatc
     1021 ctattgcgcg ctgccaaaag ttctctagac aaaattaaag atccagctac ttttgaaaaa
     1081 gaatccccat acatcaaaca atgttttgat catttagcag aacttgaaaa aactctggat
     1141 gattcagaca agggaagaaa acaaaaagaa gactttactg cctataaaag cgctttaatg
     1201 gataaacagg aaaaggctta tccagaaatg ctacagttac aatacaagag tgaagcattg
     1261 attatgcaat tacgtgatat ctgtaaaatt caccatgaca atttagctga agcaagaaga
     1321 gtgagacttc aacaactcga tagtcaggga ggcggacttt taggtggatt atgggctgta
     1381 accaatacca taggtcttac tacagacaat gtgaatattg aaaaaatgca gattagaatg
     1441 aaggagcaaa ctcttagagc gtttaagaca gaacttacta atgacaagct taatacggat
     1501 caagtcattg cctttttagc aaaaggaagt ccatctgaat tgcaagaagc tttaggaata
     1561 tcaaaagaga atgcagaaca attgcatgga ttgttaaaac aactggagat taaaacagca
     1621 tcaaccgata aactccagga aattgaaaag ctaattgatg aagtctcaac taaaataggg
     1681 aaagaaccag taaaacaaga tcataccatc acaatagatg aggaagaaag cgatgacata
     1741 aggtatggtt tctaaggagt attttttaag tgtttgttca attgttaaat gaagtaatga
     1801 atagtacaaa gctgtggcag atgagaaggc aaaacatcat attatttgtt tctcatcaag
     1861 ctgctgcttt ttattttaag gaatacta
//
LOCUS       DACVWI010000344         1885 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.345, whole genome shotgun sequence.
ACCESSION   DACVWI010000344 DACVWI010000000
VERSION     DACVWI010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.345"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..709
                     /locus_tag="JBH85_15155"
     CDS             <1..709
                     /locus_tag="JBH85_15155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAU0947528.1"
                     /translation="HRNNSNYGFSYANNAVFTKISTPFILYLNPDCFVEKDTIENLLH
                     TMHQHNDAGMVGCLVNNMDGSVQTGCCGLTPTPARVLNQLLKLSKIFPNNPKFGGYLF
                     SKEKLPTKPTEVELISGSCMFVRKKAIDEVGLLDDNYFLYCEDYDWFYRFTQSNWKII
                     FNPNTKVTHIKSFSTKQIPFKVLLYKAKGMWRFYNKFFKQNSSPATTIIIRVGIIARF
                     FSLSGLLLFKKLLRTTN"
     gene            complement(878..>1885)
                     /locus_tag="JBH85_15160"
     CDS             complement(878..>1885)
                     /locus_tag="JBH85_15160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAU0947529.1"
                     /translation="IVLAGHTLSGIPGVISFGKQLPFQSLAVNAFFWLSGFLITYHCI
                     TKQPYSFVEYMIDRFCRIYVIYIPVLILSVLLLVWVDLVSMPEIKDWVANIFMIQHTP
                     FNRIFEFLPTIPPLAQISPLWSIAVEWWLYTLFGIAFFFHKSSFATRFIMSLLIIPAL
                     LVAGYFTLKEYVALVWFLGSGCAYHFCNINKKYNNNAILMLSLITGTAFLVRFYILKH
                     SIMNMYDLQLVIPGCIFLYSLLLLLSANKLNKKIELISAFLAFISYTLYLSHEPIRRV
                     VSTFIEPSNLKRGFFICGVCIACATLIAYLLENKHLLVREWMKNKFLQKNTSNKLAYI
                     T"
BASE COUNT          673 a          335 c          300 g          577 t
ORIGIN      
        1 tcacagaaat aattccaact atggattttc ttacgccaat aatgcagttt ttacaaaaat
       61 ctcaacccca tttatactct atcttaaccc tgattgtttc gttgaaaagg ataccattga
      121 aaatcttttg catacaatgc accaacacaa tgatgctgga atggttggat gtctggtaaa
      181 taacatggat ggtagcgtgc aaactggctg ttgtggactt actccaaccc cagccagggt
      241 tttaaatcaa ctattgaaac tatcaaaaat cttcccgaat aaccctaaat ttggggggta
      301 cttattttca aaagaaaagc tcccgacaaa accaactgaa gtagagttga tttcagggtc
      361 ttgtatgttt gtacgcaaaa aagcaatcga tgaagttggc cttctggatg ataactattt
      421 cctatattgt gaggactacg attggtttta tcgatttaca caaagtaatt ggaaaattat
      481 ttttaatccg aatactaaag ttactcatat aaaaagtttt tccaccaaac aaattccatt
      541 taaagtactg ttgtataaag caaagggcat gtggagattt tataataaat tctttaaaca
      601 aaattcttct ccagctacca ctattattat tagagttgga attatcgcga gatttttttc
      661 tttaagtggt ttgcttcttt ttaagaagct gttgcgtact accaactaga aaattcaccg
      721 cctctaactc cacgtaaccg tacacgcaat ggagtcaact taaggtgatg tcttatttag
      781 caaacccgcc aaaaggactg atgccgcttg cggttttccc attttatcct aataattaac
      841 aggtttaccc aaaagacaaa taaatcggat aatttgctta cgtaatataa gctaacttat
      901 ttgatgtgtt tttttgcaaa aatttatttt tcatccactc acgaaccagt agatgtttat
      961 tctctagtaa ataagcgatg agagttgcac aagcaatgca aactccacag ataaaaaaac
     1021 ctctctttaa attagatggt tcaataaatg ttgatactac tcttcttatt ggctcatggc
     1081 tcaaatatag tgtataggaa ataaacgcaa ggaatgctga tattaattct atttttttgt
     1141 ttagtttgtt agctgacagt aataacagca gtgaatataa gaagatacaa ccagggatta
     1201 ctaactgtaa atcatacata ttcattattg aatgcttcaa tatatagaat ctaactagaa
     1261 aagctgttcc tgtgattagg cttagcatta aaattgcgtt attattatac ttcttattta
     1321 tattacaaaa atgatatgcg cacccagaac ccagaaacca tactaaagca acatactctt
     1381 ttaatgtgaa gtatccagca actagtaatg caggaataat caataaactc attataaacc
     1441 tggtagcaaa agagctttta tgaaaaaaaa aggctattcc aaacaaagta tataaccacc
     1501 actcaactgc tattgaccac aatggggaaa tttgagctaa aggtggaata gtaggtaaaa
     1561 attcaaaaat tcgattaaaa ggtgtatgtt gtatcatgaa aatattggca acccaatctt
     1621 taatttcggg cattgacacc aaatccaccc atactaacaa caaaacagat aaaatcaata
     1681 ctggaatata aataacataa attctgcaga accgatcaat catgtattct acaaatgaat
     1741 agggttgctt tgttatgcaa tgatatgtaa tcaaaaatcc tgagagccaa aaaaaagcat
     1801 tcactgccaa ggactgaaaa ggcagttgtt tcccaaatga aattacccca gggatacctg
     1861 ataaagtatg tccggccaag actat
//
LOCUS       DACVWI010000345         1812 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.346, whole genome shotgun sequence.
ACCESSION   DACVWI010000345 DACVWI010000000
VERSION     DACVWI010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.346"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            18..1205
                     /locus_tag="JBH85_15165"
     CDS             18..1205
                     /locus_tag="JBH85_15165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HAU0947530.1"
                     /translation="MVFGFLNLSFWGYVLATFILTQITIASVTIYLHRNQTHRALTLH
                     PVVSHFFRFWLWLTTGMVTADWVAIHRKHHATTDVEGDPHSPVVEGIRKVFWQGAELY
                     REARKDRDMVAKYSHGTPTDWIERNVYSRHSSKGILLMLLLDLFFFGIPGMTVWAIQM
                     MWIPLFAAGVINGIGHYWGYRNFECPDAATNIIPWGFWIGGEELHNNHHTFASSAKFS
                     VKWWEFDIGWMYIRILSLFGLAKVKKLPPKLAMDEGKFHVDLDTVRAVISNRFQVMSN
                     YYKNVIRPILKYEKNTGIETKEDKKLFQRAGRLLRREDKLLSTKAKTRLQKLLDAREQ
                     LRVVYSYKQSLQNVWLKTATTQKELVEALQQWCRQAEESGLDVLKQFAQQLKGYVPVY
                     TRE"
     gene            complement(1247..1645)
                     /locus_tag="JBH85_15170"
     CDS             complement(1247..1645)
                     /locus_tag="JBH85_15170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947531.1"
                     /translation="MFNKFLVTTLSVVTLTLSPYGFAKDDSCEVQVAVSTPPVQFDQS
                     VAFNVTNDDGISKSIILQGGSSPKTIGKLICSPLPYTISATQYFTPTGLTNKHAQPVG
                     QCVLKAGNVILNGSNNSVAVVFPNDFICHH"
BASE COUNT          543 a          324 c          393 g          552 t
ORIGIN      
        1 tacaatgtgg ggttattatg gtattcggct ttttaaacct atctttctgg ggatatgttc
       61 ttgcaacttt tatcctgact caaatcacaa ttgcatctgt tactatctat ctgcatagga
      121 accagactca tagagcgcta acattacacc ctgtggtcag tcattttttc cgtttttggt
      181 tatggttaac tacgggtatg gttactgcgg attgggttgc tatccatcgc aagcaccatg
      241 caacaactga tgttgaggga gaccctcata gcccagtggt tgagggaatc aggaaggtat
      301 tttggcaagg cgctgaactt tacagagagg cacgcaagga cagggatatg gttgccaaat
      361 attctcatgg cacgccaacc gattggatag agcgtaatgt ctactcgcgc cattcaagta
      421 aaggtatttt gctgatgtta ttactggatt tatttttctt cgggattcct ggaatgactg
      481 tatgggcaat ccaaatgatg tggattccgc tgtttgctgc gggagtcatc aatggcatcg
      541 gccattattg gggatacagg aattttgaat gtcctgatgc tgctactaat atcattccct
      601 ggggattttg gattggtgga gaagagttac ataataatca tcacactttt gcgtcctcag
      661 ccaaattttc agtgaaatgg tgggagtttg atattggttg gatgtatatt cgcattcttt
      721 ccttgttcgg tttggccaag gtaaaaaaat tacctcccaa attggctatg gatgaaggaa
      781 aattccatgt tgatctggat actgtgagag cagttatttc aaatcgtttt caagtgatgt
      841 ctaattacta taagaatgtc atcagaccta ttttgaagta tgaaaaaaat accggcattg
      901 agacaaaaga agacaagaaa ttgtttcaac gggcaggtag attactgcgt cgagaggata
      961 agctattatc gacaaaagct aaaactcgtt tgcaaaaact gctcgatgcc cgcgaacagt
     1021 tgagagtggt ttactcttac aagcaatcat tacaaaatgt ttggctgaaa acagcaacga
     1081 ctcaaaaaga attagtagaa gctctgcagc aatggtgccg ccaggcagag gaatcgggtc
     1141 ttgatgtgct gaaacagttt gctcaacaat tgaaaggcta cgtaccggta tataccaggg
     1201 agtgatgttt ttgcactccc catcaatgca caatgcagct aatattttag tggtggcata
     1261 taaaatcatt ggggaaaaca acagcaacgc tattgttaga accattcaat atgacatttc
     1321 cagcttttaa tacgcattgg ccaacaggtt gagcatgctt attggttaag cctgttggtg
     1381 taaaatattg ggtggcgcta atggtataag gcagtggaga acaaattaat ttccctatag
     1441 tttttggact gcttccgcct tgtaaaataa tggatttact aatcccatca tcattcgtta
     1501 cgttaaacgc cacactttga tcaaattgaa cagggggagt ggaaacagcc acttgaactt
     1561 cgcatgaatc atctttggca aaaccatatg gtgaaagtgt caatgtgact acggatagtg
     1621 ttgtaactaa aaatttatta aacataatac cctcattttc tgaatgctac ttctaatatt
     1681 aaaaaacact tatattacga tgcttactta aaagcagatt tagggtatct tcattcgatt
     1741 tgtaatgcaa attagtcatc attaatacat ttatatcaga tccgtaacat gatcaaaaat
     1801 aaagtagctg aa
//
LOCUS       DACVWI010000346         1803 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.347, whole genome shotgun sequence.
ACCESSION   DACVWI010000346 DACVWI010000000
VERSION     DACVWI010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.347"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..457)
                     /locus_tag="JBH85_15175"
     CDS             complement(<1..457)
                     /locus_tag="JBH85_15175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin"
                     /protein_id="HAU0947532.1"
                     /translation="MKTKQEVSQQDKLKDSKSSTPLQTKEPWFISDTLNITFDSYDFS
                     ISVTEQAPIPSRIVFSGGGSRILAHIGALDELTRHGLKFTEFSGSSAGAMVAAFAYLG
                     YNCSEIKQIISWFNEDKLLDSPLIFNFNNIKQIFNKGGLSSAKLMRQAAN"
     gene            complement(900..1718)
                     /locus_tag="JBH85_15180"
     CDS             complement(900..1718)
                     /locus_tag="JBH85_15180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4116 domain-containing protein"
                     /protein_id="HAU0947533.1"
                     /translation="MTNSNHLRNPVTKSLNDLCQDELSVIGSYLGAWNDLWSLTFTSS
                     EMKKSLIHQQTDELWKFFFKEFFPYIPLPTEDFYKNFMKNYKIWYQTLYRVKQDPFFL
                     MYLDKLKEDPAHLFRNDKEIIIAAIEKQPFLYKNFSRGYKEDEEVILCALKNNRFIIH
                     DVPRTVREGFKEIADIKEDKARVDACDKLIDKLSPQRVSKIKSLDLFKSQFTLQAQNI
                     TKKSGEQVNNRQLQRSTAPITPEGISSLVHLGLFRDTQIQYEEKEESLHNKYRK"
BASE COUNT          514 a          302 c          325 g          662 t
ORIGIN      
        1 aatttgctgc ttgacgcatt aattttgccg agctaagccc ccccttgtta aatatttgtt
       61 ttatgttatt gaaattaaaa atgagtgggc tatcaaggag tttatcttca ttaaaccagg
      121 aaataatttg ttttatttcg gaacaattat aaccaagata agcaaaggca gcgaccattg
      181 caccggctga gcttccggaa aattcagtga actttaatcc atgcctggtt aactcatcta
      241 gggcacctat gtgtgccagt attcttgaac ctccaccact gaaaacaata cgagagggta
      301 tgggggcttg ttcagtgaca gagatactaa aatcatagga gtcaaaagta atatttaagg
      361 tatcagagat gaaccatggt tcttttgtct gtagtggtgt agacgatttt gaatctttta
      421 atttatcctg ctgagaaact tcttgctttg ttttcatacc gataatccct tatataaaac
      481 aaattctaag ttatttttta cgattctttt gctacagcca tcacaatcta tcgagtattt
      541 aaaacgattt cgccctaagg tttttgtatt gagggtactc tcctttttta aatgattggt
      601 gtttcagtta ttgggtattt taaatcaaat tgagtaggtt aagatctcat ggatcaataa
      661 ttaacataaa tggtctttga gcagacgtca acttgtttca ccaattattc gaaatgaaaa
      721 tttaagttac tagacaactt gcagagagga gttatccgaa gggtgttttg tttaaaaaaa
      781 cacccattat tgcaatcaaa acatattagc ttccggcctt attcaatcta ttaaggctat
      841 gcttggctgt ttctgtaatg aatttgcgat agagcaaccc ttatcaaaat ttattcgcct
      901 cattttcgat atttgttgtg tagagattct tccttttcct catattggat ttgtgtgtct
      961 ctaaacaggc ctaaatgaac aagagagctg ataccttcgg gcgttatagg cgcagttgat
     1021 ctttgaagct ggcggttatt tacttgttct ccactttttt ttgttatatt ttgtgcttgc
     1081 agagtaaatt ggcttttaaa caagtcgagg cttttgattt tagaaacacg ttgtggtgaa
     1141 agcttgtcaa ttagcttgtc acacgcgtca actcttgctt tatcttcttt gatatcagct
     1201 atttctttga atccttctct cactgttctt ggtacatcat ggattatgaa tcgattattt
     1261 ttaagagcac acagaataac ctcttcgtct tctttgtatc ctcgggaaaa atttttatac
     1321 aaaaagggtt gtttctcaat ggctgctata ataatttctt tatcattcct aaataagtgt
     1381 gcaggatctt ctttgagttt atccagatac attagaaaaa aaggatcctg tttcacacgg
     1441 tacaatgttt gataccatat tttatagttt ttcatgaagt ttttataaaa atcctctgtt
     1501 ggtagaggaa tataagggaa aaattccttg aaaaaaaatt tccacaactc atcggtttgc
     1561 tgatggatta aggatttttt catttctgat gatgtaaatg ttaagctcca taaatcattc
     1621 caggcaccaa ggtaggagcc aattacagac agctcatctt ggcaaaggtc atttaatgat
     1681 ttggtaacag gattccttaa atggttactg tttgtcattt tttacctcct gattgtggtt
     1741 ttgtttttct atcatgtttt tttgatatgc aaatgtgact tcaagatgac tataatgctt
     1801 tct
//
LOCUS       DACVWI010000347         1775 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.348, whole genome shotgun sequence.
ACCESSION   DACVWI010000347 DACVWI010000000
VERSION     DACVWI010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.348"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            173..835
                     /locus_tag="JBH85_15185"
     CDS             173..835
                     /locus_tag="JBH85_15185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HAU0947534.1"
                     /translation="MSRKMDRFQDRYQAGQLLGDKLKPYANRNDVIVLALPRGGVPVA
                     AMISEAINAPLDLMIVRKLGVPGHEELAFGALAINKIKVYNEELLQYLQLSQKDINQV
                     LSQEENELAKRNRAYRGDKPFPDLKNKIVILVDDGIATGASMRAAVLALRKESPKKII
                     VAVPVAPEDMNDIMKSVADEYICLISPMSFNAVGLWYEDFSQTEDEEVLYLLGKVYDR
                     KV"
     gene            complement(991..1722)
                     /locus_tag="JBH85_15190"
     CDS             complement(991..1722)
                     /locus_tag="JBH85_15190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947535.1"
                     /translation="MKKFILFPLISALSSTFVHAGGMGDSNSCCSTFASLEGGYTWSS
                     IDGYNFTIVGTNNTLTSTEDKQGYSGRLAVGVLSMIDDQYGFTGEVGWGYYGRTTINP
                     SVAGALGQVPAALTIKHTLSGFDALLGVTYFQNYFSWSAKAGALIQNMQVDSSAFFTP
                     QIFPIVDNFDMKTNRTAVLPAAKLGVAYNFDSNWAITGSYLFALGANPGTTATFNPNT
                     LRSSLSIDDENPMMNAILFGVQYTA"
BASE COUNT          578 a          323 c          373 g          501 t
ORIGIN      
        1 atgcgccatt ttgaggtaca gggttattct ctgtatctga agtcaactct aatgacgaaa
       61 tagtgtacgg gtagttattc agctaaaaat cagagaagat taagaataaa ctcttgctga
      121 cagcaggata atttccagat ctgaactaca ataaaaatag caggacagat aattgagtag
      181 gaaaatggat cgctttcaag atcgttatca agctggacaa ttattaggag ataagcttaa
      241 gccttacgcg aaccgaaatg atgtcatagt gcttgcacta ccccgtggag gagtgcctgt
      301 agctgcaatg atttctgagg ctataaatgc tccattagat ttaatgattg ttcgcaaact
      361 gggtgttcct gggcatgaag aattagcttt cggtgctttg gccattaata aaataaaagt
      421 ttataatgaa gagctgttgc aatatttgca actttctcaa aaagacatta atcaggttct
      481 ttctcaagaa gaaaacgaat tagcaaagcg gaatagagct tatcgtggtg acaaaccttt
      541 tcctgattta aaaaataaaa tcgtaattct ggtagatgac ggtattgcca caggcgctag
      601 tatgcgtgca gctgttcttg ctttacggaa ggagtctcct aaaaaaatta tagtagcggt
      661 tcctgtagca cctgaagata tgaatgacat aatgaaaagt gttgcggatg aatacatttg
      721 tcttatatct cccatgtctt ttaacgctgt gggtctttgg tatgaagact tttcccagac
      781 tgaggatgaa gaagtattat atttacttgg aaaagtatac gatagaaaag tctaaaaata
      841 acaaatgaca aaccatgaca aaatgaaaga gaggagcttt tatctccttt ttttgagtcc
      901 tgtgaagacc tgttgaagga ataagttaaa aagtcttggg gccaaatact tgaccccata
      961 taaaaggtga cgtttttaaa taatattaaa ctaagcggta tattgaaccc caaataaaat
     1021 agcattcatc atgggatttt catcgtcaat actcagactg gatcttaatg tgttaggatt
     1081 gaaagtcgcg gttgttcctg gatttgctcc aagcgcgaac aaataagagc cggtaatagc
     1141 ccagttagaa tcaaagttat aggcaactcc cagctttgct gctggcaaaa cagcagtcct
     1201 gttcgttttc atatcgaaat tatccactat aggaaatatt tggggagtga aaaaggcact
     1261 agagtctact tgcatatttt gaatgagcgc gcccgccttg gcagaccagc taaaatagtt
     1321 ttgaaaatag gtaacgccga gcagggcatc aaatccgctc aaggtatgct tgatcgtcaa
     1381 ggcagctgga acctggccta aagctcctgc aacacttgga ttaatggttg ttctaccata
     1441 gtacccccag cctacttcgc cggtgaatcc atattgatca tctatcatac taagcacacc
     1501 gacagccaga cggccactat aaccttgttt atcttctgtc gaggtaagag tattgttggt
     1561 accgactata gtaaaattgt atccatcaat ggaactccag gtgtatccac cctcaagtga
     1621 cgcaaaagta gagcaacaag agttggaatc acccatacca ccagcatgga caaaagtact
     1681 ggacagggcg gaaattaaag ggaacaggat aaattttttc atgatttagt aactcattcc
     1741 atgtttatta ttgtaaaagt caataattta aatca
//
LOCUS       DACVWI010000348         1764 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.349, whole genome shotgun sequence.
ACCESSION   DACVWI010000348 DACVWI010000000
VERSION     DACVWI010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.349"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(4..1611)
                     /gene="murJ"
                     /locus_tag="JBH85_15195"
     CDS             complement(4..1611)
                     /gene="murJ"
                     /locus_tag="JBH85_15195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HAU0947536.1"
                     /translation="MSSDKTLNVKATGIIALAVMCSRVLGLIREVLFNALFGSASMGI
                     FLIAFRAPNLLRDLFAEGALSVSFITVFSKKIETEGEKSAWQLASKMLTLTSVFMSIL
                     CLFGIIFAKYLIFILAPGFSVKDAETTIFLTQLMFPFILLVSLAAIVMGMLNSKNVFG
                     MPALASSFFNIGSILGGALCGWFIDPSFGERALIGLAIGTVIGGLLQLGVQFPSLRKV
                     GFYFKPNFHWYDSGVRNTLILTIPAVIAASAVQINVLINSGFASYLGKEAVTWLNSAF
                     RLMQFPLGVLGVAIATITLPVVSRLAATNNHSQFGSTLARAIRLAVFLTMPAAVGLWF
                     FATPIISLIYEHGKFHASDSLQTAYALQFYALGLVAYSCIKVLSPAFYAIDKKWTPMI
                     VSFATIILNIILNYFLIFKLSMGHRGLALSTTVSATVNFLVLYVLMTRLHNLQNRYLF
                     NTILRCVLASAILGFMCQSIFAYGADFLYHPSFWIRAVSLAISISFAVLVYLSMCVIL
                     RVDEAKSIFMIIRHRLGFPIKFKSKQV"
BASE COUNT          642 a          347 c          334 g          441 t
ORIGIN      
        1 tgtttatacc tgttttgatt tgaacttaat agggaatcct aatcgatgac gaatgatcat
       61 aaaaatactc tttgcctcat ccactcgaag gattacacac atgctcagat acactaagac
      121 agcgaaagaa attgaaatag caagggaaac tgcacgtatc caaaatgaag gatggtaaag
      181 gaagtcagct ccatacgcaa agatagattg acacataaaa cctaatattg cagatgctaa
      241 aacacaccgt aatatagtgt tgaaaaggta tctattctgc aaattatgca agcgggtcat
      301 gagaacatat agaaccaaaa aattaacagt agcagaaact gttgtggaca aagcgagtcc
      361 acgatgcccc atactcaatt tgaaaattaa aaaataattc aaaataatat ttaagataat
      421 ggttgcaaaa ctgacaatca tgggagtcca ttttttatca atggcgtaaa aggctggtga
      481 aagcaccttg atgcatgagt aagccacaag tccaagagcg taaaattgca atgcatatgc
      541 ggtttgcaag gaatccgacg catgaaattt tccgtgttca taaatgaggc ttataatggg
      601 ggttgcaaaa aaccaaagtc caactgcagc tggcattgtc aaaaacaccg ctagacggat
      661 cgcgcgagcc agtgttgatc caaattgaga gtgattgttc gttgcagcaa gacgagatac
      721 gactggtaat gtaatcgtag caatagcaac acctaacact ccaagtggaa attgcataag
      781 tctaaatgcg ctgttgagcc atgttactgc ttcttttcca aggtatgagg caaatcctga
      841 attgataagt acatttattt gcactgcact tgcggcgatc actgctggaa tagttaaaat
      901 caaagtgttt cgaaccccag aatcatacca atgaaaattg ggtttaaaat aaaaaccaac
      961 ctttcttaag ctgggaaatt gtactccgag ttgtaaaagt ccccctatta ccgttccgat
     1021 tgccaaacca ataagtgccc tctctccaaa tgatggatca ataaaccatc cacataaagc
     1081 gccaccaaga atagagccaa tgttaaaaaa actcgaggct aacgcaggca taccaaaaac
     1141 atttttagaa ttcagcatcc ccattactat ggcagcaaga gacactaata aaatgaaagg
     1201 aaacatcaat tgagtgagga aaatcgttgt ttcagcatcc ttcactgaaa aaccaggcgc
     1261 taaaataaaa atgaggtatt tggcaaaaat aatcccaaag agacataaga tgctcatgaa
     1321 aacactggtc aatgtaagca tttttgaagc cagctgccaa gctgattttt ctccttcagt
     1381 ttcaattttt ttagagaaaa cagtaataaa agaaacggag agagcgccct ctgcaaacaa
     1441 atccctcaaa aggtttggcg cacggaatgc gataagaaaa atccccatgg aagcactgcc
     1501 aaataaagca ttgaataaga cttctcgaat aagacctaat actcgactac acataacagc
     1561 aagggcaatg atccctgttg cttttacatt tagtgtctta tcactactca tggattatcc
     1621 aaagtctctt caaaaacatt aatatgatag cccaagtata agaggagcga taccctatca
     1681 tgcttggcat atgcaataga tattgtggtg ttaactcatt gaagtaggta ttaaattgga
     1741 aacaattagg ctctacccca acaa
//
LOCUS       DACVWI010000349         1748 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.350, whole genome shotgun sequence.
ACCESSION   DACVWI010000349 DACVWI010000000
VERSION     DACVWI010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.350"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            9..221
                     /locus_tag="JBH85_15200"
     CDS             9..221
                     /locus_tag="JBH85_15200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016989164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947537.1"
                     /translation="MANLIHYYRKQSGLSQQELARLAGVGKTVIYDIEKGKESVRLNT
                     LLKVLDVLNIQIKFETPFPQTTDNNS"
     gene            218..526
                     /locus_tag="JBH85_15205"
     CDS             218..526
                     /locus_tag="JBH85_15205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin HipA"
                     /protein_id="HAU0947538.1"
                     /translation="MRKAYVSVSGIKAGILEELQGGTYQFTYFEDYHGAPVSLTMPLK
                     NKVYDFDVFPPFFEGLLPEGIMLEALLRKYKIDKNDYFGQLILVGQDVVGAVTIEEIR
                     "
     gene            523..1461
                     /locus_tag="JBH85_15210"
     CDS             523..1461
                     /locus_tag="JBH85_15210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2370 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947539.1"
                     /translation="MKHCPITYEKISDQENYSQRGLHLLSPQLKNLSPLDLSADEQRQ
                     EAIARVGKMSVQGVQKKLSAKLKIKEGCFEIVDQYGQYILKPQSDIYPELPENEAITM
                     TLAKTIGLEVPVHGLVYSKDNSLTYFIKRFDRIGHNKKLALEDFAQLSGEDRHTKYKS
                     SMEKVIAVIEQFCTFPKIEFVKLFKLTLFNFLVGNEDMHLKNFSLITKDRKISISPAY
                     DLLNSTIAQKNTKEELALPLKGKKNNLTKSDFLKYFAIEKLGLNQNVIDGIVQEFHQV
                     IPKWQELIGFSFLSQEMQEKYLELLEQRCKRLNFFD"
BASE COUNT          615 a          300 c          310 g          523 t
ORIGIN      
        1 aacacgaaat tgccaattta atccattatt accgcaaaca aagcggctta tcacaacaag
       61 aattagcccg gttagcgggg gtcggtaaga cggtcatcta tgatattgaa aaagggaaag
      121 aatcggtgcg gctaaataca ttgctaaaag tgctcgatgt tttaaatatc caaataaaat
      181 ttgaaacgcc ttttcctcaa acaacggata ataattcatg agaaaagcat acgtatcggt
      241 gagtggcatt aaggctggaa tattagaaga attacaaggt ggaacctatc aatttaccta
      301 ctttgaggat tatcacggcg cacctgtttc actcactatg ccgttgaaaa ataaggtcta
      361 tgattttgac gtgttccccc ctttttttga aggattactt cctgaaggca ttatgcttga
      421 agcactatta cgcaaataca agatagataa aaatgattat tttggtcaat tgatactagt
      481 tggccaagat gtcgtaggcg cagtgactat tgaggaaata agatgaaaca ctgccctatt
      541 acttatgaaa agattagtga ccaggaaaac tattcgcaac gtggattgca tttgctttct
      601 cctcaattaa aaaaccttag tccattggat ttaagtgctg atgagcagcg tcaggaagca
      661 attgctcgag taggaaagat gtctgttcaa ggcgtccaaa agaaactaag cgcaaaacta
      721 aagattaaag aaggctgttt tgaaatcgtg gatcaatatg gtcagtatat tttaaaacca
      781 caaagtgata tttatccaga attgcctgaa aatgaagcca ttactatgac ccttgcaaaa
      841 actataggcc tcgaagttcc ggttcatggt ttggtttatt ctaaagacaa cagtttaacc
      901 tacttcatta aacgctttga tagaataggc cataataaaa agttagcttt agaagatttt
      961 gcacagctat caggtgaaga tcgacataca aaatataaaa gttctatgga aaaagtaatt
     1021 gcagtcatag aacagttttg tacattccca aaaattgaat tcgtgaaatt atttaagttg
     1081 acgttgttta acttcttggt cggtaatgaa gacatgcatc taaaaaactt ttccttaatt
     1141 acgaaggata gaaaaatttc catatcacca gcctacgatt tacttaactc aaccatcgct
     1201 caaaaaaaca caaaagaaga actggcttta cctctaaaag gaaaaaaaaa taatttaaca
     1261 aagagtgatt ttcttaaata ctttgccatt gaaaaattag gattaaacca gaacgtcatc
     1321 gatgggatcg tacaagagtt ccatcaggta ataccaaaat ggcaagagct gattggcttc
     1381 agttttttat ctcaagagat gcaggaaaaa tatctcgaat tgctagagca acgatgcaag
     1441 cgattaaatt tttttgatta actaatatcc gcagtctcaa tcatatgctt aagtataaaa
     1501 ttagctattt gttacatggg ttttcttaat cgctcaacat ctttcatgat atactctgct
     1561 gtaacgtcat tgttcatttt tgcgttctgt tcatttttaa tgaacataaa acaattatga
     1621 acaaaaataa ttttattact gacttcacag agcttgtaat gccaggccaa gtatacagaa
     1681 atcctatatt tacataggat ttctgtatac ttaacaaaat aatcgccttt tgccagttca
     1741 tgctaaca
//
LOCUS       DACVWI010000350         1745 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.351, whole genome shotgun sequence.
ACCESSION   DACVWI010000350 DACVWI010000000
VERSION     DACVWI010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.351"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>1745
                     /locus_tag="JBH85_15215"
     rRNA            <1..>1745
                     /locus_tag="JBH85_15215"
                     /product="23S ribosomal RNA"
BASE COUNT          469 a          352 c          548 g          376 t
ORIGIN      
        1 aatcctggtt gaagatgggt ggaccatcat ccaaggctaa atactactta ctgaccgata
       61 gtgaaccagt accgtgaggg aaaggtgaaa agaaccccgg agaggggagt gaaatagaat
      121 ctgaaaccgt ttgcgtacaa gcagtgggag catggtttag gctgtgtgac tgcgtacctt
      181 ttgtataatg ggtcagcgag ttactttcag tggcgaggtt aactgaataa gggagccgta
      241 gagaaatcga gtctgaatag ggcgatagtc gctgggagta gacccgaaac cgggcgatct
      301 agccatgtgc aggatgaagg ttgggtaaca ccaactggag gtccgaaccg ggtaatgttg
      361 aaaaattatc ggatgacgtg tggctaggag tgaaaggcta atcaagcccg gagatagctg
      421 gttctccccg aaagctattt aggtagcgcc tcgtgaatga ttactggggg tagagcactg
      481 tttcggctag ggggctgtca tggcttacca aaccgatgca aactccgaat accggctaat
      541 tgaatcacgg gagacacacg gcgggtgcta acgtccgtcg tggagaggga aacaacccag
      601 accgccagct aaggtcccca agtactagtt aagtgggaaa cgatgtggga aggcatagac
      661 agccaggagg ttggcttaga agcagccacc ctttaaagaa agcgtaatag ctcactggtc
      721 gagtcggcct gcgcggaaga tgtaacgggg ctaaaactag tcaccgaagc tgcggatgtg
      781 cgcgaaggcg cacgtggtag gggagcgttc tgtaggctga tgaaggtgca ttgagaagtg
      841 tgctggaggt atcagaagtg cgaatgctga catgagtaac gataatgtgg gtgaaaagcc
      901 cacacgccgg aagtcccagg tttcctgcac gacgttaatc ggagcagggt gagtcggccc
      961 ctaaggcgag gctgaagagc gtagtcgatg ggaaccaggt taatattcct ggacttttta
     1021 taagtggtga agtggggacg aagaaggcta ggtgagccag gcgttggttg tcctggtact
     1081 tgcatgtagg ggggaagact tggcaaatcc ggttttccat aactctgagg tgcgaagtgg
     1141 ttctgacctt ttggtacaga gaagtcattg atgcccggct tccaggaaaa gctgctagcc
     1201 ataacttata gagaaccgta ccgcaaaccg acacaggtgg acaggtagag aatactaagg
     1261 cgcttgagag aactcgggtg aaggaactag gcaaaatggt accgtaactt cgggagaagg
     1321 tacgcccttt ctggtgatgg gatttacttt cagagctgga gagggccgca gagaccaggt
     1381 ggctgcgact gtttattaaa aacacagcac tctgcaaatt cgtaagaaga cgtatagggt
     1441 gtgacgcctg cccggtgccg gaaggttaat tgatggggtt atcttcggag aagctcttga
     1501 tcgaagcccc ggtaaacggc ggccgtaact ataacggtcc taaggtagcg aaattccttg
     1561 tcgggtaagt tccgacctgc acgaatggcg taacgatggc cacactgtct ccacccgaga
     1621 ctcagtgaaa ttgaaatcgc tgtgaagatg cagtgtaccc gcggctagac ggaaagaccc
     1681 cgtgaacctt tactatagtt ttgcactgga ctttgatgat gactgtgtag gataggtggg
     1741 aggct
//
LOCUS       DACVWI010000351         1733 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.352, whole genome shotgun sequence.
ACCESSION   DACVWI010000351 DACVWI010000000
VERSION     DACVWI010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.352"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..662)
                     /gene="pyrF"
                     /locus_tag="JBH85_15220"
     CDS             complement(<1..662)
                     /gene="pyrF"
                     /locus_tag="JBH85_15220"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HAU0947540.1"
                     /translation="MTPKLIVALDFDNQDNAIQLVEKLDPNHCALKVGSELFTLLGPQ
                     FVKALVRREFKVFLDLKFHDIPNTVAKACHSAAELGVWMINVHAIGGLKMLQAARESL
                     KTYGKDRPLLIAVTVLTSFEEGELASVGISNTLPEQATHLAMLAREAGLDGVVSSAHE
                     VKIIKQKCGENFITVTPGIRLPNNLKDDQSRVMTPQQAIREGSDFLVIGRPITQASNP
                     YEV"
     gene            complement(663..>1733)
                     /locus_tag="JBH85_15225"
     CDS             complement(663..>1733)
                     /locus_tag="JBH85_15225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HAU0947541.1"
                     /translation="DILNSIKRVLNHGQYIMGPEIAELEKELATFVGVKHAIVNSSGT
                     DALLMALMALDIQPGDEVITSPFSFFATAEVISLCHATPVFVDIDPLTYNLDPEQLER
                     AITKKTKAIMPVDLYGQCADYDVINAIATQYGIPVIEDAAQSFGATYKGKYSCSLATI
                     GCTSFFPSKPLGGYGDSGACFTNDDVLAQKLIEIRIHGQNARYCHHRVGINGRMDTIQ
                     AAILLQKLKIFSNEILLRQKVAKRYDQMLSELVKTPYVHECNASVYAQYTIEVENRDV
                     FAKSMQASGIPTAVHYPIAMHQQQALGYLNYKLGDFPNSEKASQHVISLPMHPYLQED
                     EQLKIVAAVRNALLVMNEEAMV"
BASE COUNT          513 a          381 c          295 g          544 t
ORIGIN      
        1 acctcataag gattgctcgc ttgcgtaatt ggtcttccaa taaccagaaa atcacttcct
       61 tctctgatgg cttgttgtgg agtcattact cgcgattgat catcttttag attatttggc
      121 agtcttatgc caggagtaac ggtaataaaa ttctcaccac acttctgttt tataatttta
      181 acttcatgtg cagagcttac cacaccatca agcccagcct ctctggcaag catagccaga
      241 tgggttgctt gctcaggcaa tgtgttacta ataccaacac tggccagctc cccttcttca
      301 aaactggtca gcacagtcac tgctatcaac aaaggcctgt ctttaccata cgtttttaaa
      361 gattccctgg cagcttgtaa catttttaag ccgccgatgg catgaacatt tatcatccat
      421 acccctaatt ctgcagcgga gtggcatgct ttagcaactg tattagggat atcgtgaaat
      481 tttaaatcta aaaatacttt aaactctctt cttaccaatg cttttacaaa ctgaggccct
      541 aatagagtaa aaagctcact cccaacctta agtgcgcaat gattcggatc aagtttttca
      601 accaactgta tagcgttatc ttgattatca aaatccaacg caacgattaa tttaggtgtc
      661 atttatacca tggcctcttc attcatcaca agtaaagcat ttctaactgc tgcaactatt
      721 ttcaattgct catcttcttg taaataaggg tgcataggca ggctaattac atgttgactt
      781 gctttttcag agtttggaaa atctccaagt ttgtaattta agtaaccaag tgcctgctgt
      841 tgatgcatag caattgggta atgaacagct gtaggtatac ctgaggcttg cattgatttc
      901 gcaaatacat ctctattctc aacctcaatg gtatactgag catacacact cgcattgcat
      961 tcatgcacat aaggagtttt cactaactca gaaagcattt gatcataacg ttttgctact
     1021 ttttgtcgca atagaatttc attagaaaat attttcagct tctgaagtag tattgctgct
     1081 tggatagtgt ccattcgacc gttaatccct acccgatgat ggcaatagcg ggcattttgt
     1141 ccatgaattc taatttcaat taatttttgg gctaaaacat catcattagt aaaacaagct
     1201 ccagaatcac cataaccacc taaaggtttt gacgggaaaa aactagtaca gccaatagta
     1261 gccagggaac aagagtattt gcctttataa gtagctccaa aactctgcgc agcatcttca
     1321 ataacaggaa taccgtattg agttgcaatg gcattaatca catcgtaatc tgcgcattgc
     1381 ccatataaat caactggcat aatggccttg gttttcttag tgattgctct ctctaactgc
     1441 tcaggatcca aattataagt taaaggatct atatctacaa agacgggtgt tgcatgacaa
     1501 aggctaatca cttctgctgt tgcgaagaaa ctaaatgggc ttgtaattac ttcatcccca
     1561 ggctgaatat ccagagccat caatgccatt aataaagcat ctgtaccact tgaattcaca
     1621 atcgcatgct tcactccaac aaaagtggct aactcttttt caagttctgc aatttcaggc
     1681 cccataatat attggccatg atttaatacc cttttaatgc tgtttaaaat atc
//
LOCUS       DACVWI010000352         1722 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.353, whole genome shotgun sequence.
ACCESSION   DACVWI010000352 DACVWI010000000
VERSION     DACVWI010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.353"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1618
                     /gene="sidG"
                     /locus_tag="JBH85_15230"
     CDS             <1..1618
                     /gene="sidG"
                     /locus_tag="JBH85_15230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SidG"
                     /protein_id="HAU0947542.1"
                     /translation="LEEALWEEGIDVEEVNSAKKDISKPAPEIQKLTDLQEQLRNHKE
                     SGVKLSSELEETLNSSVKMWKTKIDSPCQVISESSVKALVSKINSTRPELVKEKEQLP
                     EQEESLSKEAKKAQEELIKIQEFSQFYSENSSAYMVIGLPPHHQVSLPLAVNGKRGLH
                     PEAMLKKMHELVAGPEKKEFNLHTNNCSLTSIEVLSAGAQHDPLLHSIMGTRALGFFG
                     TPQQVLENAKLTSKTINEGKKSNIFTPLVTASPLDRALGYAMSIYMDPEASKAKQNAG
                     LALGVLVGLAKTPGIIIGSLLNPKQGFNDILNTLNLVYSRNSTGLKVGLTLMALPAMI
                     VLAPLAAIQKGVEVIAETIAKPFKLIANLFKQKPESTDEITVSVGSKKVAEKEGSYSN
                     TALAGLVNSKIKSKIDENTITVEFQKSPQKMIEEFESQLKENPGKVVVLSEKAHNAVL
                     KFVSKSDDEALKQKFYDCCNQSVARSQKFAPKTRDEIDELVEEVTSTDKTELTTSPRQ
                     EPSMSSTIDEEENIDSEHQIETGTESTMRI"
BASE COUNT          664 a          279 c          308 g          471 t
ORIGIN      
        1 actggaagag gctctatggg aagaaggaat tgatgttgaa gaggttaatt ctgccaagaa
       61 agatatatcc aaacctgctc cagaaatcca aaagttaacc gatcttcaag aacaattaag
      121 aaatcataaa gaatcaggag taaaattatc atctgaactt gaagaaactc ttaattcttc
      181 tgtaaaaatg tggaaaacca aaattgactc tccatgccaa gttatatcag aatcctctgt
      241 aaaagcactc gtaagtaaaa taaattcaac tcgtcccgag cttgtaaaag aaaaggaaca
      301 gttgccagaa caagaagaat ctctaagtaa agaagcaaaa aaggcacaag aagagttaat
      361 aaaaatacag gaattttctc aattttacag tgaaaattcc agtgcttata tggtaattgg
      421 tttaccacct catcatcaag tgtctttacc tttagctgta aatggcaaaa gggggttaca
      481 tccagaagct atgttaaaaa aaatgcatga gcttgtagct ggtccagaaa aaaaagaatt
      541 caatttacat accaataact gctcacttac ttcgatagaa gtattatctg cgggagcaca
      601 acatgatcca ttattgcatt caataatggg aacacgtgcc ttaggttttt ttggaacacc
      661 acagcaggta ttagaaaatg ccaaactaac aagtaaaacc attaatgaag ggaaaaaaag
      721 taacattttt acaccattag ttactgcaag tccattagac agagcattag gatatgccat
      781 gtcaatatac atggatcctg aagcctcaaa agcaaaacaa aatgccggcc tggctcttgg
      841 tgtactggtt ggtttagcca aaacaccagg cattatcatt ggctctttgc tgaaccccaa
      901 acaaggtttt aatgatattt taaatacttt aaacctcgtc tatagtcgca attctactgg
      961 attaaaagtt ggattaaccc ttatggccct accagcaatg atagtattag ctcctttagc
     1021 agcaatacaa aaaggtgtgg aagttattgc tgaaacgata gccaagccat ttaaacttat
     1081 agcaaattta tttaaacaaa agcctgaaag cactgatgag attactgttt ctgtaggtag
     1141 taaaaaagta gctgaaaagg aaggtagtta ttctaatact gcgttagctg gattggttaa
     1201 tagtaaaata aaatcaaaaa ttgatgaaaa taccattaca gtagaatttc aaaaatcgcc
     1261 tcaaaaaatg atagaagaat ttgaatcaca attaaaagaa aatcctggaa aagttgttgt
     1321 attaagtgaa aaagcacata atgccgtcct aaaatttgta tcaaaaagtg atgatgaagc
     1381 actaaaacag aaattttatg attgttgtaa ccaatcggta gcacgtagcc agaaattcgc
     1441 acccaagact agggatgaaa ttgatgaatt ggtggaagaa gttacatcta ctgataaaac
     1501 ggaattaact acaagtccca gacaagaacc atcgatgagc tctactattg atgaggaaga
     1561 aaacatcgat tcagaacatc aaatagaaac tggaactgaa agtacgatgc gcatataaat
     1621 aataatgata atcattattg tttatatgtt gtttactact tggttgtttt ataatcaagg
     1681 gagatctaaa aaattatttt gttagaatac ttcataattt ct
//
LOCUS       DACVWI010000353         1702 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.354, whole genome shotgun sequence.
ACCESSION   DACVWI010000353 DACVWI010000000
VERSION     DACVWI010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.354"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(87..575)
                     /locus_tag="JBH85_15235"
     CDS             complement(87..575)
                     /locus_tag="JBH85_15235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein"
                     /protein_id="HAU0947543.1"
                     /translation="MRLQLMKITGFTLLETMLTLALLVGLLLLGSWSFFSLIQNNERE
                     TLVNSIKTAIQYSKIQAIHLGHPIYLLPFGSNENWSRGMVLAKLNQTTNKTELIHQWQ
                     WSSNSWNINWKGVDSNHRIIISNIPNRAMSNGKFILNNKRTNEKVVVTLNRLGRVRVG
                     GN"
     gene            complement(581..1360)
                     /locus_tag="JBH85_15240"
     CDS             complement(581..1360)
                     /locus_tag="JBH85_15240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAU0947544.1"
                     /translation="MMTLITGATRGIGLALAYEFASHGHDLILIGRDSEQLEHISKQL
                     NTQYQVNVEYKVHDLSKPGSAFKLYTDLKEQGVEVNCLVNNAGIGYMGSFVEMGMNKL
                     DDLMNINMISLSELTLCFLHDFVARNEGSVLQVSSTAAFQPGPFMAAYYASKAYVATL
                     SHAIAYELKDTKVSMSILCPGATKTNFFHASGMESSMLERGYIGMMTPEKVAKIAYKG
                     LKKGKLYIIPGLRNKILAYAAAISPKAIALRIASYLHHKIL"
     gene            complement(1305..>1702)
                     /locus_tag="JBH85_15245"
     CDS             complement(1305..>1702)
                     /locus_tag="JBH85_15245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HAU0947545.1"
                     /translation="SLNIHSPFDCLEHFNKISGNAHVMIHIIVKLIKELKERSCQQIY
                     DVLKEVRHLLYSDINLMKANYFGKWDLGLPQCIRILNLLKQEKHDDVSRLLDCLRNQM
                     EPVQTVKGGVHHDDLNNGSHERYRFGLGV"
BASE COUNT          544 a          339 c          257 g          562 t
ORIGIN      
        1 ataagatatt acaaaattac ctctttatga acaaccattg cttataattt aagataaaaa
       61 caaaatcctt ttattttgat cttgtgttaa ttacccccta ccctaaccct gccaagccta
      121 tttaaagtaa ccacaacttt ttcattggtt cgcttattgt tcaaaataaa tttaccatta
      181 ctcatcgcac gattcggaat attggatata ataattctat ggtttgaatc tacgcctttc
      241 caattaatat tccaggaatt agaactccat tgccattggt gaataagctc agttttattg
      301 gttgtttgat taagtttagc aagcaccatc cccctggacc aattttcatt agaaccaaaa
      361 ggaagaagat aaatcggatg ccccaaatga atagcctgta ttttggagta ttgaatggct
      421 gtttttatac tattaactaa tgtttctctc tcattatttt gtattagtga aaaaaatgac
      481 catgaaccta aaagcaataa tcctacaagc aaagctaatg taagcatcgt ttcaagtaga
      541 gtaaatcctg ttattttcat caattgaagc cgcatatcat ctacaaaatt ttatgatgaa
      601 gataagatgc gatcctaaga gcaatcgctt tgggtgatat ggctgctgca taggctaaaa
      661 ttttatttct tagccccgga ataatataca actttccttt ttttaatcct ttataggcaa
      721 ttttagcgac cttttctggt gtcatcattc caatatatcc cctctccaac atagaacttt
      781 ccataccaga agcatggaaa aaattggttt ttgttgctcc aggacaaaga atagacatag
      841 ataccttagt atctttaagc tcataagcaa tagcatggga aagcgttgcc acatatgcct
      901 tactcgcata gtaggctgcc ataaaaggac ccggttgaaa tgctgctgtt gaagaaacct
      961 gtaaaacact gccttcgttt cgagccacaa aatcatgaag aaaacatagt gttaattcac
     1021 ttaaagaaat catgtttatg ttcattaaat catcgagctt gttcatgccc atctcaacaa
     1081 aagaacccat atagcctatg cccgcattat taaccaggca gttgacttct acaccctgct
     1141 cttttaaatc agtatacaac ttaaatgcgc ttccaggttt acttaagtca tgtactttat
     1201 attcaacatt aacttgatat tgtgtattta attgctttga aatgtgctcc agctgttcag
     1261 aatctctacc aataagtatt aaatcatggc catgtgatgc aaactcatac gccaaggcca
     1321 aacctatacc tctcgtggct cccgttatta aggtcatcat gatgcactcc tccttttact
     1381 gtttgcacag gctccatttg gttacgtagg caatccaata gccgagatac atcgtcatgc
     1441 ttttcctgtt ttaacaaatt caagatccgt atacattgag ggagacctaa atcccatttg
     1501 ccaaaataat ttgctttcat aagattaatg tcgctataca ataaatgcct aacctctttt
     1561 aatacatcat aaatttgttg gcatgatctt tctttgagct ctttaattaa tttaacgatg
     1621 atatgaatca taacatgagc atttcctgaa attttgttaa aatgctcaag acaatcaaag
     1681 ggagaatgta tatttagtga at
//
LOCUS       DACVWI010000354         1698 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.355, whole genome shotgun sequence.
ACCESSION   DACVWI010000354 DACVWI010000000
VERSION     DACVWI010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.355"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            516..1370
                     /locus_tag="JBH85_15250"
     CDS             516..1370
                     /locus_tag="JBH85_15250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HAU0947546.1"
                     /translation="MELTMAKELIFIDWDDTLVNRENAEDFESVTDENNTIYQMSPMF
                     IGAVEALKQLQEKYHVVIVSSRGDLNRLRQLQLQSYDLESSIMPLENFTFEDNDNRLL
                     FTRYGETNFPDKASFILYIQKMSGNKIKVFIDDDHTEIEAAQSKGIPTIHATHNKYLQ
                     NTEQFFSGLIHQVDNMELSHIFNKVAAEIRNNSRSISWGRQIAGFFSVHLPIAQSLEN
                     LASKLQRKSANEVSEEFDQYLKKIAYDPNKKGDIAVSLTKAKTAIDKHISAPIEIKED
                     QPFLNRMI"
BASE COUNT          609 a          274 c          271 g          544 t
ORIGIN      
        1 taaccatttt gatctataaa ataactgtcg aaattgaaca gttatggcac ttatttttta
       61 cctataatca cgccgacaac ttgtttctgt ttctattact taagctacag gatttaataa
      121 atgaaaatta ctggagcaat taagatgatc caaacacatg gacgagcaga cagatttgtg
      181 aaaaagcaac taccaaatga ttggttttta gcactcgaaa ttactgatta ggaagaaata
      241 ctgataatga tcttgaacag caaaagattg ataccgcatt attgattaat tgtaggtttt
      301 gtcatagggt tgaacctaaa ataatggatg aaaaaaattt aaaaaaactt catttacacc
      361 tgggattact ctgctcctat tctttttaca cttagtttat tcctatttca ctgctaaaaa
      421 atgacagtta tttctattgc tctaacgggc tataattgta aaaaatttaa tctttatgat
      481 cttgcgattg ttacattaaa ttatttaaga ttaatctgga gttaaccatg gccaaagaac
      541 taatttttat tgattgggat gatacattag tcaatagaga gaacgcagaa gattttgaat
      601 cggtaacaga cgaaaacaat actatttatc aaatgtctcc tatgtttatt ggtgcagtag
      661 aagcgctgaa acaacttcaa gaaaaatatc atgttgtgat cgtcagttca cgaggagact
      721 taaataggtt aagacagctc caattacaaa gttatgatct agagtcttca attatgccat
      781 tagaaaattt cacatttgaa gacaatgata atcgtttatt atttacaagg tatggtgaaa
      841 caaactttcc tgataaagca agtttcattt tgtatatcca aaaaatgagc ggtaataaga
      901 taaaagtatt tatcgatgat gaccatacag aaatagaagc cgcacagtca aaaggaatac
      961 ccacaataca tgcgactcat aataaatatc tgcaaaatac agaacaattt ttttcaggat
     1021 taattcatca agtagataac atggaacttt cgcatatttt taataaagta gcagctgaaa
     1081 tacgtaacaa ttctcgttca atttcctggg gaaggcaaat tgctggtttc ttttcagttc
     1141 acctgcctat agcacagagt ttagaaaatt tggcatctaa attacaaaga aaatctgcta
     1201 atgaggttag cgaagaattt gatcaatacc ttaagaaaat tgcttatgat ccaaataaaa
     1261 aaggggatat agccgtaagt ttaactaaag ctaaaacagc aatagataaa catatatcag
     1321 ccccgattga aatcaaagaa gatcaaccat ttctcaatag aatgatttaa caattttctc
     1381 ctttctccat tatccaggtg ccttggtatg tcctagaagc tactgccatt cactttagct
     1441 tcctcaatcg acatcccggg gcttgtcctc gggatttaaa atttgtgaga tcctgcaaac
     1501 aaatctcgag attcaggtat atgtatcgat atctaaagtc aatagcaatg atccaaggag
     1561 aaatacattg atttctgtaa taatcaatat ttcaatcatc cagttgcgat ttaattttat
     1621 gctgttgact tattgaataa tgattctcta catcattttt atgaagttta aaattcagag
     1681 aatagccttt cacttgca
//
LOCUS       DACVWI010000355         1670 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.356, whole genome shotgun sequence.
ACCESSION   DACVWI010000355 DACVWI010000000
VERSION     DACVWI010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.356"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            1..>1670
                     /gene="pieA"
                     /locus_tag="JBH85_15255"
     CDS             1..>1670
                     /gene="pieA"
                     /locus_tag="JBH85_15255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieA/LirC"
                     /protein_id="HAU0947547.1"
                     /translation="MQEKIINLGKGLKKVNEGIKKHISRAEEFLYLANQWEKENIKIN
                     DLLNGVQFTVNDKKMSGQEIKEELSNLIERYNNFLKKNLKGERSETLELKEIQQQLTN
                     LYNAVNDIYTYLSINKTEFFLEAIKSCYKKDQRMGSTIQFVLKIADHLSKERLQFNLN
                     LNSQFAEASESFQEVTTKFYREVATPRIESAQKLLELMNNFVDQYISQGASPEDAIKK
                     LKPFEKYFTIEISHYEEFGHLVYKTNFNCNPALFDVNPIEFLNELFVQFYKDTTLSSR
                     SKTALKQVLDKFEITYEVPKTWYGYIGWDIPIVTDKNSVLVTYDKQAYYRYHQESGQR
                     EMEFFETIERCLDKSKDIIIATKKENLKDQKEFSKLIDKAIKELEETKKKRIFQKEPH
                     ELVTSIINKSIKLLQDLKNNMPLRREDLVMVILSTENALNAAKSKLKPQEINLSEPEK
                     CIKNFKKILAIKQKEELCFYKSDEEQSIFSKHINSELRELVESYQVQKRSEKELVIEP
                     EKMNSPQRIEPKEEDKKIDLNKKMNLYRVQKIMKNFVFEYCGYKGGKKV"
BASE COUNT          690 a          210 c          300 g          470 t
ORIGIN      
        1 atgcaagaaa aaattatcaa cttagggaaa gggcttaaaa aggttaatga aggcattaaa
       61 aaacatattt cccgagcaga agagttcctc tacttggcga accaatggga aaaagagaat
      121 attaagatta atgatttatt gaatggagtg cagtttacag ttaatgataa aaaaatgtcg
      181 ggtcaagaaa ttaaagaaga actatctaat ctaatagaaa gatataataa ttttctaaaa
      241 aaaaacttaa aaggggaaag aagcgaaaca ttagaactaa aggagattca gcaacaactt
      301 actaatttat acaatgctgt taatgatatt tatacttatt tatccataaa taaaacagag
      361 ttttttctcg aagcaatcaa gtcttgctat aaaaaagatc agaggatggg tagtacaatc
      421 cagtttgtgc tgaagatcgc ggatcatctt tctaaggaga gactgcaatt taatttgaat
      481 ttaaattcgc aatttgcaga agcctccgag agttttcagg aggtaactac caaattttac
      541 agagaggttg ctactcctag aatagaatct gcacaaaaat tgttggaatt gatgaataat
      601 ttcgtagacc aatatatatc acaaggagca agtccagaag atgcaataaa aaaacttaag
      661 ccatttgaga aatattttac tattgaaatc tcgcattatg aagagtttgg gcatttagta
      721 tataaaacaa actttaattg taatccagcg ctatttgatg ttaaccccat tgaattttta
      781 aatgaattat ttgtgcaatt ttataaagac accactttat catctcgctc taaaacagct
      841 ttaaaacaag tgcttgataa atttgagatt acttatgagg tgccaaagac atggtatggt
      901 tatattggct gggatatccc tatagtaact gataaaaatt cagtattagt tacttatgac
      961 aaacaagctt attacagata tcatcaagaa agcggccaga gagaaatgga gttttttgag
     1021 acaattgagc gctgtttgga taagtcgaaa gacattatta ttgcgactaa aaaggaaaat
     1081 ttaaaagacc aaaaagagtt ttctaaattg atagataagg ctattaagga gttagaagaa
     1141 acaaaaaaga aaagaatttt tcaaaaggag ccgcatgaat tggtaacaag tattatcaat
     1201 aaatcaataa agttgctgca agacttgaaa aataatatgc cattaagacg agaagatttg
     1261 gtcatggtaa tcttaagtac tgaaaatgct ttaaatgcag caaaatcaaa attaaagcca
     1321 caagaaatca atttatccga accggaaaaa tgcattaaaa attttaaaaa gatattagca
     1381 ataaaacaga aagaagagct ttgtttttat aaatcagatg aagaacaatc tattttctcc
     1441 aaacacataa attctgagct tagagaactt gtcgaatctt accaggttca aaagagaagt
     1501 gaaaaagagt tggttattga gccagaaaaa atgaattcac cacagagaat agaaccaaaa
     1561 gaagaagata aaaagattga tttaaataag aaaatgaatt tataccgtgt tcaaaaaatt
     1621 atgaaaaatt ttgtatttga gtattgcggg tataagggag ggaaaaaagt
//
LOCUS       DACVWI010000356         1667 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.357, whole genome shotgun sequence.
ACCESSION   DACVWI010000356 DACVWI010000000
VERSION     DACVWI010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.357"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            71..>1667
                     /locus_tag="JBH85_15260"
     CDS             71..>1667
                     /locus_tag="JBH85_15260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S13"
                     /protein_id="HAU0947548.1"
                     /translation="MEMRMMKRYSKRLLTYIYLLMKSISLAFTMQQLSYSTDKIPIPI
                     NKLPDDLNKVMNKSIYKKALWGLRVVDLDTGNVLLNLNSSTQFYIGSVRKIFSVGELL
                     NERGADYQSVTTVHYDGVVHNGNLNGNLVLVASGDLTMGGRTLPDGHVAITEYDHNEA
                     NSLGNAIITQTNLLAGYQNLAKQVYKAGIRSISGDIVIDDRLFEPFNFRGEFDVTPIF
                     INDDVVDIVILPSLINENANVSWQPHSSAFTVINQLLTVNTHEKYNLELESKLPACIG
                     KPGCSGIIKGHLPINFIPPLTHNYPLVQTFRITKPSNYARTIFIEALQEAGINVSSID
                     KTKENPKKLLKSNNLYNKNNKIAALKSLPLGEHVKYILKVSYNIGADTSLVLYGLTKG
                     ARSMIESLNVEKKVLDKKYGISPSEYHFIDGSGGGETKATNTAITKWLTIMSKRPVFN
                     IFYNSLPILAVDGSLGSINNFQSDPSLSGATGRVHAKTGTYVLVNESGMLVKGRSLAG
                     YIISKKNHRLAFALVINNIPIQSL"
BASE COUNT          571 a          301 c          299 g          496 t
ORIGIN      
        1 aatttcccaa taatttttaa cagttattat gacaaattgg acaaacctaa aagaataaaa
       61 acatatatta ctggaaatgc gaatgatgaa gagatactcg aaaagattac tgacttatat
      121 ttatctactt atgaaaagca tatctctagc gttcacgatg caacaactat catacagcac
      181 agataaaatc cctataccaa tcaataaact acctgatgac ctaaacaaag tgatgaataa
      241 atctatttat aaaaaagcat tgtgggggtt acgtgttgtt gatcttgata ctggtaatgt
      301 attgctgaat ctcaactcaa gtacgcagtt ttatattggt tctgtgcgca agatatttag
      361 tgtaggcgaa ctattgaatg aaagaggagc tgattatcaa tctgttacta cagtccatta
      421 tgatggtgta gtacacaatg gtaatctgaa tgggaatctg gtactcgttg cttcaggtga
      481 tttgaccatg ggtggacgaa ctttacctga tggacatgtc gctatcactg aatacgatca
      541 taacgaggca aattcattgg gtaatgcaat tattacacag actaatcttt tagcaggtta
      601 tcaaaatctc gctaaacaag tttacaaagc tggcattcgt tctatttcag gcgacattgt
      661 gatagacgat agattgtttg aaccatttaa tttcaggggt gaatttgatg taacacctat
      721 ttttataaac gatgatgtag ttgatattgt aattcttcca agtttgataa acgagaatgc
      781 aaatgtatcg tggcagccac attcatcggc gttcaccgtt atcaaccaac ttcttacggt
      841 taatacgcat gaaaaatata atcttgaact tgagtcaaaa ttacctgcct gcataggtaa
      901 accaggctgt tctggcatca ttaaaggcca tttgcctatc aattttatac cgccacttac
      961 tcacaactac ccattagtcc aaacttttcg aatcactaaa ccatctaatt atgccagaac
     1021 aatttttatc gaggcactac aagaagcagg catcaatgtt tcatcgattg ataaaaccaa
     1081 agaaaatccg aaaaaactac taaaatctaa taacttgtac aataagaata acaaaattgc
     1141 tgctttgaaa tcattgccat tgggagagca tgtaaaatat attctcaaag ttagttataa
     1201 tatcggagca gataccagcc tggtgttgta cggactaaca aaaggcgcgc gctccatgat
     1261 tgaaagtcta aacgtggaaa aaaaagtcct ggataaaaaa tatggcatat ccccatcaga
     1321 atatcatttt attgatggca gcggcggcgg cgaaacgaaa gcaaccaata ccgctataac
     1381 aaaatggctt actataatgt ctaaaagacc agtatttaac atattttaca atagtctacc
     1441 tattcttgca gtagatggtt cacttggctc aattaataac tttcaatcag acccatcgct
     1501 ttctggggcg acaggtcgag tgcatgcaaa aactggaact tatgtattgg taaatgagtc
     1561 gggtatgtta gttaaggggc gctctcttgc tggttacatt attagtaaaa aaaatcaccg
     1621 acttgcattt gccttagtta ttaataatat acctatacaa tcactag
//
LOCUS       DACVWI010000357         1648 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.358, whole genome shotgun sequence.
ACCESSION   DACVWI010000357 DACVWI010000000
VERSION     DACVWI010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.358"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(63..713)
                     /locus_tag="JBH85_15265"
     CDS             complement(63..713)
                     /locus_tag="JBH85_15265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HAU0947549.1"
                     /translation="MTYSFSKPVSWVFLFTAVIYLVSLSFIQYPATTVLKPIPIVCLI
                     VGVFRTSLSSSAKILLILALVFSLAGDVVLTLPFSLQLELGIACFLLAHCFYITLFLK
                     SFEFNRLHLFYYLPIFLFMGFAAFTMIPYLGNLLIPVMIYFCVLMLMVFSAFQVKKET
                     LTISSGALFFLISDLTLALNLFIYTQADVRIFVMFTYYVAQFLLTFGLVRLYEKGG"
     gene            complement(793..1341)
                     /locus_tag="JBH85_15270"
     CDS             complement(793..1341)
                     /locus_tag="JBH85_15270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947550.1"
                     /translation="MKGYCLTRNFVKQELIMTKEKSESGNSPSNSEEHGTLGPDVYEN
                     ARKLNIQLATRGPAILYALGKASEQVTNGNVVTAVGGMVVGAVGFFGNRFYRNKGDDS
                     AYTYMGQIVGAVQFTAGFTLLALQAFEVFTDTGETSPLLNVVKLSGVALTLTESALIL
                     INSYLYGDGSAKPTSITSPKID"
     gene            complement(1440..1625)
                     /locus_tag="JBH85_15275"
                     /pseudo
     CDS             complement(1440..1625)
                     /locus_tag="JBH85_15275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096155.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          579 a          329 c          262 g          478 t
ORIGIN      
        1 agagtagtaa aaaagtattt aacttgatga acacttttta tgttatctga ataataaatt
       61 catcaacccc ctttttcata taatctgacc agaccaaaag ttaataagaa ttgagctacg
      121 taataggtaa acataacaaa aatccttaca tcagcctgag tataaataaa caagttaagt
      181 gccaaagtta aatcagaaat caaaaagaac aaggctccac tgctaatcgt taaagtttcc
      241 ttttttacct gaaaagcact aaataccata agcatcaaga cacagaaata aatcattact
      301 ggaattaata aattgccaag atatggaatc atggtaaatg cggcaaaccc catgaataaa
      361 aaaataggaa gatagtaaaa taaatgtaac ctattgaatt caaatgattt taaaaacaaa
      421 gtgatataaa aacaatgagc taacaagaag caagcgatac ctaattccaa ctgcaatgaa
      481 aagggtaaag tcaataccac atcccctgcc aaggaaaata caagtgccaa gatcaggaga
      541 attttagccg atgaggagag agatgttctg aataccccaa caattaaaca aactattgga
      601 ataggtttta aaacagtagt ggcaggatat tggataaacg aaagactgac caaataaatg
      661 actgcggtaa acaaaaacac ccaagacact ggtttggaaa aagaataagt cataaatagt
      721 cctttatttt aaaatcaaag taattgattt aagctgcttt atatctcaac cctgttagcc
      781 tttttattat attcaatcaa tcttagggct tgttattgat gttggtttgg ctgatccatc
      841 cccatataaa taggagttga ttaaaattaa agcgctttcg gttaacgtta acgccacccc
      901 acttagtttt accacattga gcaaggggct tgtttctcca gtatctgtaa acacctcaaa
      961 tgcctgtaat gccaacagtg tgaatccggc agtaaattgc accgcaccaa caatttgtcc
     1021 catataagta tacgcggaat catcaccctt gtttcgataa aaacgattac caaaaaaacc
     1081 taccgcccca acaaccatgc caccaaccgc cgttacaaca tttccattag ttacttgctc
     1141 actggcttta cctaatgcat acagtatggc aggccctctt gttgccaatt gaatatttag
     1201 ctttcttgca ttctcataaa catccgggcc taaagtacca tgttcttctg aatttgatgg
     1261 tgaatttcct gattcagatt tttcttttgt cattatcaac tcctgtttaa caaaattccg
     1321 ggtaaggcag tatcctttca atttctcaga ttatatccac ggccttgtct tattgtttga
     1381 catgatcagc cctaatttca tgtgagttat ggataagatc agccgttatc ttgaatcgct
     1441 cacgctgagg agacatttat gccatctcga agcctagtat ggaatgtaat atttcatgct
     1501 taggctttga gaggatgctt acacatctcc ctgccccaaa cggacccggg atatcgagtg
     1561 ctccttatat aacccttatg cataactcaa attaatttaa gtaattctct atttgtcact
     1621 ttaataaatt atccaatagc cgaaaaat
//
LOCUS       DACVWI010000358         1637 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.359, whole genome shotgun sequence.
ACCESSION   DACVWI010000358 DACVWI010000000
VERSION     DACVWI010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.359"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            121..513
                     /gene="lem12"
                     /locus_tag="JBH85_15280"
     CDS             121..513
                     /gene="lem12"
                     /locus_tag="JBH85_15280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem12"
                     /protein_id="HAU0947551.1"
                     /translation="MQNEKEVKELIQSDKKKRVTWNDNQNEGQIDEKFLKIGTASTPY
                     KNKLDESIAQLMEEGYSEIEATAITGKSVTPAGMVIYNNPVFYKSKESIDIEKANRYN
                     FFSIKNIGLGIVALAAAATVGLVVSKNS"
     gene            complement(537..1520)
                     /locus_tag="JBH85_15285"
     CDS             complement(537..1520)
                     /locus_tag="JBH85_15285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HAU0947552.1"
                     /translation="MIVNSSFRPLWWLRNKHAQTLYPTLVKKRLKPPIDFHERLELPD
                     GDFIDLAWSVNDLNKNTPLVILLHGLGGGINSIYVSGLMQAFANAGFRCVLMHFRGAS
                     EEPNRILRTYHSGDTADFAYFLEILANREPATKKAVVGISLGGNVLLKWLGETASSLW
                     IDAAVAVSVPFQLNSVADRMNQGFSRLYQAYLLSRLRRIFLKKLNHLNNSPFSKSDLL
                     SLKTFWDFDERITAPINGFKNAHEYYQKASSRQYLKNITTPTLIIHAQDDPFMTPDAI
                     PASKELSSQTTLELSEYGGHVGFIAGTGKNSSQPVYWLEQRIPEFLLEYLS"
BASE COUNT          564 a          291 c          302 g          480 t
ORIGIN      
        1 actctatttc acctgagttt tgaattaccc gctattttta aatgatcatt tgagttcata
       61 ttttcttaag tatttcttgt taaaattgct caaattttgg ttatcaatag agaggtttgc
      121 atgcaaaatg agaaagaagt aaaagaactc attcaatcag ataagaaaaa aagagtcaca
      181 tggaatgata atcaaaacga agggcagatt gatgaaaaat ttcttaaaat aggcactgct
      241 tcaacgcctt ataaaaacaa attggatgag agtattgccc aattgatgga agaaggttat
      301 tcagaaattg aagcaacagc aataacggga aaatcggtaa caccagcggg tatggttatt
      361 tacaataatc cagtttttta taaatccaag gaaagcatag acatagaaaa agcgaatcgt
      421 tataactttt tctcaattaa aaatattgga ttaggtattg tggctttagc agccgctgca
      481 acagtaggac tggttgtatc aaaaaacagc taaaaccaat acattccaat tgatttttaa
      541 gacaaatact ctagcaaaaa ctcaggaatt cgctgttcaa gccaatacac aggttggctt
      601 gagttttttc ctgtaccggc aataaaacct acatgccctc catattcgct taattccaga
      661 gtggtttgag aagatagttc cttcgatgct gggatggcat ctggtgtcat gaatggatca
      721 tcttgtgcat gaataatcaa agttggtgtg gtgatattct taaggtattg tcttgagctt
      781 gctttttggt agtattcgtg ggcattttta aatccgttaa tcggtgctgt aattcgctca
      841 tcaaaatccc agaaggtttt taaggaaagt aagtcacttt ttgaaaatgg tgaattattt
      901 aagtgattta atttttttag aaaaatacga cgtagtcgac ttaataagta agcttgatag
      961 aggcgagaaa agccctgatt catcctgtca gccactgaat ttaattgaaa tggaactgaa
     1021 acagcaacag ctgcatctat ccataaagat gatgctgtct cgcccaacca tttcagcaga
     1081 acattgcccc ccaaagatat gccgacgacc gctttttttg tcgcaggctc tctatttgcc
     1141 aaaatttcaa gaaaataggc aaaatcagcc gtgtcgccgg aatgataggt acgcaaaatc
     1201 cgattaggtt cttcactggc tccgcgaaaa tgcattaaaa cacaacgaaa cccagcattg
     1261 gcaaacgctt gcattaatcc actgacataa atagagttaa tacctccacc caaaccatgg
     1321 agtaatatga ctaagggtgt atttttattt aagtcattaa cagaccaggc cagatcaata
     1381 aaatcaccat caggtaactc cagacgctca tgaaaatcaa ttggtggttt tagccgcttt
     1441 tttaccaaag taggatataa agtttgcgca tgcttgtttc ttagccacca caggggtcta
     1501 aatgaactgt ttacaatcat attaatagcc tgaaaataaa aaatcgaact ctatccggat
     1561 aaattagacc aagattagaa gtagcaaaaa aatacttact taaattatag tcaatcaata
     1621 attgaaacca atcattg
//
LOCUS       DACVWI010000359         1630 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.360, whole genome shotgun sequence.
ACCESSION   DACVWI010000359 DACVWI010000000
VERSION     DACVWI010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.360"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1572)
                     /locus_tag="JBH85_15290"
     CDS             complement(<1..1572)
                     /locus_tag="JBH85_15290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HAU0947553.1"
                     /translation="MLAESVIGIVRAVNGLLEKVNVQGQASLVKSGARLEEGDVLTLL
                     SGEAYIQFINGFPEALALEKPVKLDGVSPTLQYGAEDLKEQMVQEAIAKGIDPSVILD
                     VLGSAAAGAEAVGSGGDAFIMDPLFGFGHVTAGYPTGPISFAYEADTQQLFWFVPEET
                     GAIAESELTQEPESIPQIPQFTTNQAVLTVFEDALPSGIPDSAGQARIASSSLSTLLT
                     SSPDVVASFAFNTNLSVLPTLKSGGIDLDYNLSSDKRTLTASIPGGAAVMQFELTADG
                     QLTQTLMDSIDHPTADSDDSEWMRLDLSPLIDVTFTRTSDGSVLESRTLPANAVVAGI
                     QDDVPIARAQLTNNEILLDETIGMKAGDADAANDDFNPTTTVDPFNNTYGIPIGLVQN
                     ANLLDTSTSEMGGDYKNATMTHLLKITDAVSGLQTTDGTPINLFLESNGDISGRAGDI
                     GAPAVFAIRMNPNTGAITVAQYGSIKQFDTNSHDEAVDLTGRISAVVRVTDGDGDVSN
                     AEIPIGQRIVFEDDGP"
BASE COUNT          460 a          369 c          309 g          492 t
ORIGIN      
        1 aggcccgtcg tcttcaaaaa caatccgttg tcctataggt atttctgcat tagatacgtc
       61 accatcacca tctgttactc tcactacagc tgaaatacgt cctgttaaat caaccgcttc
      121 atcatggctg ttggtatcaa attgtttaat tgaaccatac tgcgcaacgg taattgcacc
      181 agtatttggg ttcatgcgaa ttgcaaaaac tgcaggagca ccaatgtcac ctgctcttcc
      241 gctaatatca ccattcgatt ccaaaaaaag attgatagga gtgccatcgg ttgtctgtaa
      301 tcctgaaaca gcatcagtaa tttttagtaa atgggtcatt gttgcatttt tataatcccc
      361 ccccatttca gaagtactgg tatcaaggag gtttgcattt tggaccagac ctatgggtat
      421 accataagta ttattaaaag gatccacagt agtcgttgga ttaaaatcat cattagctgc
      481 atcagcatca ccggctttca ttcctatagt ttcatccaac aggatttcat tattggtcaa
      541 ttgagctctt gctattggaa catcgtcttg aattcctgca acaactgcat tagcaggcag
      601 tgttcttgac tctaaaacac tgccatcact tgttcttgtg aaagtcacat caattaaagg
      661 tgacaggtct aatctcatcc attcgctgtc atcgctatca gctgttgggt gatcaatcga
      721 gtccattaat gtttgagtta attgtccatc tgctgtcaac tcaaattgca tgaccgctgc
      781 cccgccaggg attgatgctg ttaaggtacg tttatcagag gatagattat aatcaaggtc
      841 tataccacct gactttaatg taggaagaac acttaaattg gtattaaaag caaaggaagc
      901 aacaacgtct ggtgaagagg tcagcaaagt acttagagaa gaacttgcga ttcttgcttg
      961 ccctgctgaa tcaggaatac cacttggcaa agcatcctca aaaactgtta gcactgcttg
     1021 atttgtggtg aattgaggaa tttgcgggat agattcaggc tcttgagtca attcggattc
     1081 tgcaatcgcc cctgtctctt ctggcacaaa ccaaaataat tgctgagtat ctgcctcata
     1141 agcaaaggaa ataggtccgg tgggatatcc tgctgtgaca tgtccgaagc caaacaaagg
     1201 atccataata aatgcatcgc ctcctgatcc caccgcctcg gcacctgctg ctgctgagcc
     1261 aagaacatca agtatgactg aaggatcaat acctttggct atcgcttctt gcaccatttg
     1321 ttcttttaaa tcttccgcac catactgtaa tgttggggaa acaccatcta gcttgaccgg
     1381 tttttctaag gctaatgctt caggaaatcc attaataaat tgtatgtaag cctcaccact
     1441 taataaagtc aggacgtccc cttcctctaa tcgagcgcca gactttacta agcttgcttg
     1501 tccttgcaca tttacttttt ctagtagtcc attgacggct cttactatac cgataacaga
     1561 ttcagctaac atgttctgtc ctcaaagttt actattattc atattaataa tagttcaagg
     1621 attaagcctc
//
LOCUS       DACVWI010000360         1615 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.361, whole genome shotgun sequence.
ACCESSION   DACVWI010000360 DACVWI010000000
VERSION     DACVWI010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.361"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            18..491
                     /locus_tag="JBH85_15295"
     CDS             18..491
                     /locus_tag="JBH85_15295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947554.1"
                     /translation="MRSRTEKLSSKRSIINHEHLITDEVCMIGIYREGGDLSIYAESP
                     EGIEHFSINRGNSLDMVILPHTLVGTWRHHQLLRTVEQAAQIRALRIRSHDYIEQSVT
                     RKELEQFKEVFMLACKEEISNQPEIEEYLQTALGKLHGEPEMTYKPKFTEQCSIL"
     gene            683..1600
                     /locus_tag="JBH85_15300"
     CDS             683..1600
                     /locus_tag="JBH85_15300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0947555.1"
                     /translation="MDKLNLNLLRALYALLTCRHLTLASKKMGISQSSMSIYLKQLRE
                     HFHDDLLVRGQGNIMQLTPLANSLIGKARQALSLIETLFNTIETFNPLISERSFSIGM
                     TDLMSILLTPSLIKRLEQEAPGVKLNIKHPSYLNTVEVFESGDIDLMIGMFERVPEGL
                     KQQKLFQDEAVIVGGNNHPGIQKGKICIEELFKYPLIQFSLRETPFYNYFDRYLRQLG
                     HDKRVSISLGQGIMPLLVLTDSHYLTLSIRKVAEKLSHLIPLSIASVPFEVDSFNCYQ
                     YWHQKDDADPGHRWLREMILSIAKKSYLK"
BASE COUNT          543 a          291 c          295 g          486 t
ORIGIN      
        1 taaaatagga gttatccatg cgtagcagaa cagaaaaatt aagcagtaaa cgttcgatca
       61 tcaatcatga gcatttaatc actgatgaag tctgtatgat aggaatttat agagaaggtg
      121 gtgacttatc aatttatgct gaatcacccg aaggaattga acatttctct ataaatcgag
      181 gaaacagtct tgatatggtg atattaccac atactttagt tggaacttgg aggcatcatc
      241 aattacttcg tacggtggag caagcagcac agattcgagc attaagaata agatctcatg
      301 attacatcga acaatcagtc acccgaaagg aacttgaaca atttaaagag gtatttatgc
      361 tcgcatgcaa agaggaaata agcaatcaac ctgaaattga agagtatctc caaaccgctt
      421 tgggtaagtt acatggggaa ccagagatga cttacaaacc aaagttcaca gagcaatgca
      481 gcattctcta aaatttttat tagaataatc agagaaaaag ctcgagattc aaaatcttcg
      541 agctttttta atatccttca tcagttcgat tagtaccagg cttatttgca aactgtatcg
      601 ctctcaacta acctcaaaca aaaagccgtt aaaaatagag tcatttaaaa cctattaggg
      661 tcctatatac ggatgatgtt ttatggataa acttaatctc aatttacttc gcgctctgta
      721 tgcactatta acctgccgtc atctaacact tgctagcaaa aaaatgggta taagccaatc
      781 ctcaatgagt atttatttga agcaactgcg tgagcatttc catgatgatt tgcttgtacg
      841 tggccaaggc aatattatgc aattaactcc tttagctaac tcgttgatcg gtaaagcccg
      901 acaagccctc tcactgattg aaacactatt taatactata gagaccttta accccttgat
      961 ttcagaaaga agtttctcaa ttggcatgac tgatttaatg tctattttgt tgactccaag
     1021 tttgattaaa cgattggaac aagaggctcc aggagtcaag ctaaatataa aacatcctag
     1081 ttatttaaat acggtggaag tgtttgagtc cggtgatatt gatttaatga ttggtatgtt
     1141 tgagagagtc ccagaaggct taaagcaaca aaaattgttt caagatgaag ccgtcattgt
     1201 tgggggaaac aaccacccag gaatccaaaa agggaaaatt tgcattgaag aactatttaa
     1261 gtacccatta attcaatttt cattaagaga aactcctttt tacaattatt tcgatcgcta
     1321 tttacgtcaa ctgggtcatg acaaacgagt ttctattagc ttaggacagg ggatcatgcc
     1381 tttattggtt cttactgact ctcattatct tacattaagt attcgaaaag tagctgaaaa
     1441 actttcccat ttgataccat taagtattgc ctctgtaccc tttgaggttg acagttttaa
     1501 ttgctatcaa tattggcacc aaaaagatga tgctgatcct ggtcatcgtt ggttacggga
     1561 aatgattctc agtatagcta agaaatctta tctaaaataa tcagttaaaa cccac
//
LOCUS       DACVWI010000361         1611 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.362, whole genome shotgun sequence.
ACCESSION   DACVWI010000361 DACVWI010000000
VERSION     DACVWI010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.362"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1065
                     /locus_tag="JBH85_15305"
     CDS             <1..1065
                     /locus_tag="JBH85_15305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3458 domain-containing protein"
                     /protein_id="HAU0947556.1"
                     /translation="NLYNRCEAAKQLISALINDFCIGKKIELSPQFFAVYKALLSDNS
                     LNEWMLAELITLPSLEELIENQDKPDFEKLNEGRQLIQNALANELKTDFYNLLFRIQI
                     SGDDDKQKLKGFDLKQAGLRRLKSVCFSYLLNVDFEKTKEKLILQFEDALGKNMTETA
                     LALSMLCEINCEEADVALEDYYHYWKNDPGAVNNWFSIQALAHSPDVIERVKKLMRHG
                     DFDLSNPNKVYALLGSFIKNPFGFHSVTGEGYQLVADAIFDLDKINPTLAANLTEKFT
                     YWDKYDVNRQAMMISTLKIIYSNATSSDVRTMAKKGLDKVKEDLPLPIHLTFHGGSTM
                     QDRTAQLIADGNKENAYQLH"
     gene            complement(1205..>1611)
                     /locus_tag="JBH85_15310"
     CDS             complement(1205..>1611)
                     /locus_tag="JBH85_15310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0947557.1"
                     /translation="VQLRVQNEFEFDHHIEFYAGELKHLIKNHPSKTFDTVFVPYLLG
                     VQNGIEKEKDIVSFIKQLIELVPYGHILVTPSKSTKEFHLVGQSYFCTTAYSNIQSIP
                     DLKPYVIAEDSIWFKTQGLAVFGIKPDAEKRL"
BASE COUNT          536 a          242 c          301 g          532 t
ORIGIN      
        1 aatttgtata atcgttgtga ggcagcaaag caacttattt cagctttaat taacgatttt
       61 tgtataggga aaaaaataga attatctcct cagttcttcg ctgtttacaa ggcattactt
      121 tctgataact ctttaaatga atggatgcta gctgaattaa ttaccttacc gtctttagaa
      181 gagttgattg aaaatcagga taagcctgat tttgaaaaat taaatgaggg gcgtcaatta
      241 atacaaaatg cccttgcaaa tgaattgaaa acggattttt ataatctcct ttttagaata
      301 caaatatctg gggatgatga taaacaaaaa ttaaaaggtt ttgatttgaa gcaagcggga
      361 ttgcggcgtt taaaatccgt atgtttttct tatttgctaa atgttgattt tgaaaaaaca
      421 aaggagaaac tgattcttca atttgaggat gctttaggca aaaatatgac agagactgct
      481 ttggctttaa gcatgttatg cgaaataaat tgtgaggaag cggatgttgc attagaggat
      541 tattatcatt attggaaaaa tgatccgggc gccgtaaata actggttcag tattcaagca
      601 ttagcgcact cccctgatgt gatagagcgg gtaaaaaaat taatgcgtca tggtgatttt
      661 gatttgtcta atcctaacaa ggtgtatgct ctgctaggat catttataaa aaacccattt
      721 ggatttcatt ctgttacagg tgaaggttac caactggttg ctgatgccat ttttgacttg
      781 gataaaatta atccaacttt ggctgccaat ctaactgaaa aatttactta ttgggataaa
      841 tacgatgtaa ataggcaagc tatgatgatt agcactttaa aaataatcta ctctaatgct
      901 acttcatctg atgtgagaac aatggcaaaa aagggattgg ataaggtaaa agaagatctc
      961 ccattaccaa tccatttgac ttttcatggg ggatcaacga tgcaggatag aacagctcaa
     1021 ttaattgctg atggaaataa ggaaaatgct tatcaattgc attgatttct tatttcatga
     1081 cctgatttgg aatagagtga gatattgata ttgcctaaaa cttggggggg ggggtgaata
     1141 ctcccctttc ttgataaaga atgagaaagc acgttttcta atacaataaa tcatagtctt
     1201 attttcacaa acgcttctct gcatctggtt ttataccaaa tactgcaagt ccttgagttt
     1261 taaaccaaat actgtcttct gcaatgacat aaggttttaa atcaggaatg gactgtatat
     1321 tagaataagc tgttgtacaa aagtaacttt gcccaaccag atggaattct ttagtgcttt
     1381 ttgaaggggt cactaaaata tgaccatagg gtacaagctc tattaattgc ttaataaaac
     1441 taacaatatc tttctctttt tctattccat tttgtacacc taagagataa ggaacaaata
     1501 ctgtatcaaa tgtttttgac ggatgatttt ttatcagatg ttttaattca cccgcataaa
     1561 actctatatg atgatcgaac tcaaattcat tttgaactct taattgcaca g
//
LOCUS       DACVWI010000362         1606 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.363, whole genome shotgun sequence.
ACCESSION   DACVWI010000362 DACVWI010000000
VERSION     DACVWI010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.363"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1197
                     /locus_tag="JBH85_15315"
     CDS             <1..1197
                     /locus_tag="JBH85_15315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M4 family metallopeptidase"
                     /protein_id="HAU0947558.1"
                     /translation="HLAYHLSYYSNSEKKHVNAPNYLIDANSGEILKQWNEVRHERIG
                     QGLGGNAFTLPYRQGMFQHGNALPGLPSLGKFDVNVEDGLCRVENESIKVMNLENHNI
                     GYDFFPITIFAESVLNLSAFSYPCNETNLFLNYADGRTGPVNYAFSPVNDTMYFAQQT
                     LDMYQKVYGVNRPIGDDLPIRAYTHLGDMDNAFAVPTISLDGVVLAHQQIVIGNGDEF
                     LTAPAQSVLGHELSHNFTALHSGLMYEGQSGGINESFSDMAAIALLDYLSKDYPWYWD
                     GEDWTIGREAVKSGQPIRYLDDPAKDGMSIGHASEYTDALDVHITSGVFNKAFYLLAH
                     KPGWSIQKAFQVMVDANMNYWSPIAYYDFAACGVIQATIDKHWDKTPVIEAFAEVGVV
                     CPMHKS"
BASE COUNT          467 a          275 c          358 g          506 t
ORIGIN      
        1 catttggctt atcatttgtc ttactattcc aatagtgaaa aaaaacatgt gaatgcacct
       61 aattatctta ttgatgccaa cagcggtgag attttgaaac aatggaatga ggtgcgtcat
      121 gaaagaattg gtcagggatt aggcggtaat gcgtttactc tcccataccg tcagggaatg
      181 tttcagcatg gtaatgcttt gccggggctt ccctcattag ggaagtttga cgttaatgtt
      241 gaggacggct tatgtcgtgt tgaaaatgaa tccataaaag taatgaattt ggaaaatcat
      301 aatataggtt atgatttctt tccaattacc atatttgcag agtctgtact gaatttaagt
      361 gccttttcct acccatgtaa tgaaaccaat ttgtttttaa actatgctga tggcagaaca
      421 ggtcctgtca attatgcttt ttctccagtt aacgatacga tgtattttgc ccaacaaacg
      481 ttagatatgt atcaaaaagt ttatggtgtt aatcgtccaa taggtgatga tttacctata
      541 cgggcttaca cccatcttgg tgacatggat aacgcttttg cagtaccaac tatcagtctt
      601 gatggggtag ttcttgcaca tcagcaaatt gtaatcggaa atggtgatga atttttaaca
      661 gctcccgccc agagtgtatt gggacatgaa ttatcgcaca attttactgc cttgcattcc
      721 ggattgatgt atgaagggca atctgggggg atcaatgaat ctttctctga tatggcggca
      781 attgcattgt tagattatct tagtaaagat tatccatggt attgggatgg tgaggattgg
      841 accattgggc gtgaagctgt aaaaagtggg caacctattc gttatttgga tgatccagcc
      901 aaggatggaa tgtctatagg gcacgctagt gaatacactg atgcgttaga tgtgcatata
      961 acgagcggag tatttaataa agcattttat ttattagcac ataaaccagg ctggtctata
     1021 caaaaagcat ttcaggttat ggttgacgcc aatatgaatt attggtctcc tattgcatac
     1081 tatgattttg ctgcatgtgg cgtcattcag gcaaccatag ataagcattg ggataaaaca
     1141 cctgttatcg aggcatttgc cgaggtgggg gtcgtttgtc cgatgcataa aagctagttt
     1201 taagtagttt gacttcagtt caagctactt gaagcaacga gagttgctaa ggaagattga
     1261 tgatttttta tagaacgcct actggataag ataattattc caggtattca aagcttaaaa
     1321 gacgaggctt agttcaatag acttcttgcc taacccagtc tctttcgttt tattgcagcg
     1381 ttgcaaacgt ttctgcggcg ctcatttgct gtacgtaatc ttcgctcctt aaaatgtttg
     1441 cgccaaaata attaggttat gcaagaggcc aaataaatac tggcttggag ccactagagg
     1501 ataggtagca agggctcagc cacatccgag tcaaggtttc tctacgttga ggaggttatt
     1561 cctcaaaaac agagagtgaa taaaactcaa tttattttta aaaaaa
//
LOCUS       DACVWI010000363         1591 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.364, whole genome shotgun sequence.
ACCESSION   DACVWI010000363 DACVWI010000000
VERSION     DACVWI010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.364"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(33..1343)
                     /locus_tag="JBH85_15320"
     CDS             complement(33..1343)
                     /locus_tag="JBH85_15320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HipA family
                     toxin"
                     /protein_id="HAU0947559.1"
                     /translation="MVRMKMIGDKSVLDVYLGESQIANITLIDDQLYWSYHESWQQTG
                     YAISPHLPMHEDIPPLNVQRFLRNLLPEGNPLEVLVNVFHLSKYNTFGLIQALGLDTP
                     GSLVILPSNQAIPKHANFRLVTHEELEDRLNHCDSYNLIVWDGKPRLSVAGVQDKINV
                     VLNKEGQLGFGEGSLCSTHILKFETQKLSYLVLNEFLSMWLAKCCELNVANVQMKRFG
                     QNPALLVERFDRKLITTNIVKRRHLIDGCQAMNLPPEFKYEQNFGNNRDVAHIRDGVS
                     LPKLFDFANQCINPAKTKQQILDWVLFNVLIFNCDAHGKNISFFVGVNGISLAPFYDL
                     VNIKMYPEFEHALAMALGDEFDGDNINAYQLADFADTCRLPRSLVAKHLKYLIGKLTT
                     ALQEETQFNLVGNEEDYFKKYQEIVMKRCEHLLKQNDQITSIKL"
     gene            complement(1315..1584)
                     /locus_tag="JBH85_15325"
     CDS             complement(1315..1584)
                     /locus_tag="JBH85_15325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019217677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAU0947560.1"
                     /translation="MKKLKTPDLQQPLTAELLGEVIKARRTQSNLRLEDAAALCGVAK
                     ETFMKIEHGQSNCQLASVLQICSGLGINLYIKPWMDNGEDENDWR"
BASE COUNT          507 a          314 c          246 g          524 t
ORIGIN      
        1 cgtattaaag taagaaataa tgaggaaagg cgctagagct ttattgaagt aatttggtcg
       61 ttctgcttta acaagtgttc acatctcttc atgacaattt cctgatattt cttaaaatag
      121 tcttcttcgt taccaactaa attaaattgg gtttcttctt gcaaagcagt tgttaatttg
      181 ccaatcaaat attttaaatg tttagctact aacgaccttg gcagcctaca tgtatctgca
      241 aaatcagcca actgataagc attaatatta tcaccatcaa attcatcccc taatgccatc
      301 gccagagcat gctcaaattc aggatacatt tttatattaa ccaaatcata aaatggcgcc
      361 agtgatatac cgttaactcc aacaaaaaaa ctgatatttt taccgtgagc gtcacaatta
      421 aatatcaaaa cattaaataa aacccagtcg agtatttgtt gcttggtttt ggcaggattg
      481 atacattgat tggcaaaatc aaatagcttg ggcaaactga ctccatctct aatatgagcc
      541 acatccctgt tatttccaaa attttgctca tatttaaatt cagggggtaa attcattgcc
      601 tgacaaccat ctattaagtg ccgtcttttt actatattag tggtaatcaa tttcctatca
      661 aaacgctcta ctaataaagc agggttctga ccaaaacgct tcatctgaac attggctaca
      721 ttcaattcac agcatttagc gagccacata ctgaggaatt catttaaaac cagataagat
      781 agtttttgtg tttcaaattt aagaatatgg gtagaacaca agctaccttc tccaaaacca
      841 agttgtcctt ctttatttaa caccacatta attttatctt gtactccggc aactgaaaga
      901 cgtggttttc cgtcccaaac gattaaattg taagaatcac aatgatttaa acgatcttct
      961 aattcttcat gagttactag tcgaaaatta gcatgtttag gaattgcttg atttgatggc
     1021 aatataacta atgacccagg tgtatccaac cctaaagctt gaataagtcc aaatgtattg
     1081 tatttactta aatgaaaaac attaactagt acttctaaag gatttccttc gggtaataaa
     1141 tttcttagaa atcgttgcac atttaatggt ggaatatctt catgcatagg aaggtgcggg
     1201 gaaatagcat accctgtctg ttgccaactt tcatgataac tccaatacag ttgatcatcg
     1261 ataagtgtga tgttggctat ttgactttca ccgagataaa catccaagac tgacttatct
     1321 ccaatcattt tcatcctcac cattatccat ccaaggtttt atgtaaagat ttattcctaa
     1381 accagaacaa atttgtaata cacttgccaa ttgacagttc gattgcccat gctcgatttt
     1441 cataaaggtt tctttggcaa caccacataa agcagccgca tcttctaacc gcaaattgct
     1501 ttgagttcga cgtgctttaa tgacttcccc taacaattcc gcagttaatg gttgttgaag
     1561 gtcaggcgtc tttaattttt ttatttgctt a
//
LOCUS       DACVWI010000364         1573 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.365, whole genome shotgun sequence.
ACCESSION   DACVWI010000364 DACVWI010000000
VERSION     DACVWI010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.365"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            253..1398
                     /locus_tag="JBH85_15330"
     CDS             253..1398
                     /locus_tag="JBH85_15330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug DMT transporter permease"
                     /protein_id="HAU0947561.1"
                     /translation="MLRWIVLICISLFLPLSAYADKSDCINHHCIAVIDAGSSSSRLH
                     IYAYDLDETNTPIAIREIWNRKAVPGLPTIEHENKSVSAYMEKLFSDAPAVLMPVYFY
                     STAGMRLLPKTHHRNVNQLVAEWFDRQYYWRLVTARTISGTEEGIFAWLATNYQLNLF
                     QQEPQTLAGVMDIGGASVQIVIPVVNPSFMDHEHTTTIRLYGKEFTVFSHSFLGLGQN
                     EMGHQFFDLKFCFPEEYELPSGRQARGDAYACKDEIAILVNSVHSVSRKIKSVLAANP
                     IEKWYILGGITFMLNDKLFSLDNQYFTNRDLISYADQNICHQKWSTLEVLYPDNLMVF
                     NYCMLPSYLYALLVHGYGLKSYQKVNFMPNSKNIDWTLGVVLQHKQS"
     gene            1415..1487
                     /locus_tag="JBH85_15335"
     tRNA            1415..1487
                     /locus_tag="JBH85_15335"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1448..1450,aa:Thr,seq:cgt)
BASE COUNT          456 a          285 c          309 g          523 t
ORIGIN      
        1 tggaagtagc taataatgac gccccaaaat gaaaaatttc gcgtttatag cataaatttt
       61 gaacttttaa aagaaacaat ttcattaatt tttatttttt tacctttctt cattttgatg
      121 gaaaaatgag tttcagattg atatggattt ccaggtgtct cgcttttatt cgcaaattca
      181 gttcctgttt tgaccaaaaa aaacaattaa tgtaggataa atgcgttatt tgaggtgaat
      241 taaggaaaga ctatgttgcg atggatcgtg ttaatttgta tctctttgtt tttgccttta
      301 tctgcttatg cggacaaatc cgattgtatc aatcatcatt gcattgcggt aattgatgct
      361 ggaagttcca gttcacgatt acatatttat gcctatgatt tggatgaaac aaacacaccc
      421 attgcaatta gagagatttg gaaccgaaaa gccgttcccg gattgcctac aattgagcat
      481 gaaaacaaat cggtttcagc ctacatggag aagctatttt cagatgctcc agctgtttta
      541 atgccagttt atttttactc cacagcaggc atgagattgt tgcctaaaac tcaccacaga
      601 aacgtcaatc aattggtagc tgagtggttt gacaggcagt attactggcg acttgtaact
      661 gcaagaacga tttctggtac agaggagggt atttttgcct ggctcgcaac caattatcaa
      721 ttaaacctgt ttcaacaaga accccaaact ttagctggtg tgatggatat tggcggagca
      781 tctgttcaga ttgttattcc tgttgtaaat ccatctttta tggatcatga gcatacaacc
      841 acaattcgcc tctacggcaa ggaatttacg gttttctctc atagttttct tggtcttggt
      901 cagaatgaga tggggcatca gttttttgat ttaaaattct gctttccaga ggaatacgaa
      961 ctgccaagcg ggcgccaagc tcgaggcgat gcctatgctt gcaaagatga aattgccatt
     1021 ttagtcaata gcgttcattc tgtgagccga aagattaaat cggttttagc cgctaaccct
     1081 attgagaaat ggtatatttt gggcggcatt acctttatgc tgaatgacaa actgttttct
     1141 ctggacaatc aatattttac caatcgtgat cttatttcct atgcagatca aaatatttgc
     1201 catcaaaaat ggtcaactct tgaagtgctc tatcctgata acctcatggt gttcaactac
     1261 tgcatgttac cttcctacct ttatgctttg ttagttcacg gctatggact taagagttac
     1321 cagaaagtta atttcatgcc aaatagcaag aatatcgatt ggaccttagg agtggtattg
     1381 caacataagc aatcttaagt atacttttct ttatgccgtt gtagctcagt tggtagagca
     1441 attgattcgt aatcaagagg tcggaggttc gactcctctc agcggcatag taaaatcaat
     1501 gggttagtaa aacttatatt ttaatttcta taacgtgtcg aatatgtgtc gaacattcat
     1561 gaagctataa tat
//
LOCUS       DACVWI010000365         1565 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.366, whole genome shotgun sequence.
ACCESSION   DACVWI010000365 DACVWI010000000
VERSION     DACVWI010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.366"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..448
                     /locus_tag="JBH85_15340"
     CDS             <1..448
                     /locus_tag="JBH85_15340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAU0947562.1"
                     /translation="IVLGVALLIFFNITQVPLGFLSLLVAHITFSIPFVILTINSRIN
                     TLNPNIYFGALDLGASRYFALTRVLLPLLWPAVLSAFLLSFTLSFDDVIISYFVAGPD
                     FTILPLTIYSLVRAGVTPELNALCSITFVLSMILVIISHRLSGKLI"
     gene            445..1467
                     /locus_tag="JBH85_15345"
     CDS             445..1467
                     /locus_tag="JBH85_15345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein"
                     /protein_id="HAU0947563.1"
                     /translation="MKIFSLLLALLTFKAFSNPVVNVYAWGGEIPKKIIHQFEQESGI
                     KVNFSTYDSNETMYAKLRASQKTIYDVILPSAYFVERMQKQGMLQLLDHKLLPNLHNL
                     DEQFVKNDYDPGNRYSIPIIWGATGIFFNHNSVSNPPKNWQGLWDKKWRNQLMLLDDS
                     REIFAIALMSLGFDPNDTNPNHIKAAYEHLLQLVPNIKLFASDSIQAIMIDEDAFIGS
                     AWNGDAFKAHTENKAIEFIYPQDGFVIWVDCLAIPKNPPHLKEAYQFINFILKPETSA
                     QIALKEGHAITNAAGRALLPLPIKNNPVVYPPDKTLKKGYFQRDIGEETLALYNQYWE
                     QLKLAF"
BASE COUNT          454 a          319 c          281 g          511 t
ORIGIN      
        1 catagtcctg ggggttgcct tattaatttt ctttaatatt acccaagtac cgcttggctt
       61 cttgagcctt ttagttgccc atattacatt ctccattcct tttgttatct tgaccattaa
      121 ttcacgtata aacactttaa atcccaacat ttattttggc gccctcgatc ttggcgccag
      181 tcgttatttt gctttaacaa gagtcttgct tcctttattg tggcctgcgg ttttaagcgc
      241 ttttttatta agtttcactt tgtcatttga tgacgtcatt atcagctatt ttgtggcagg
      301 ccctgatttt actatcttgc ctttgactat ctactcttta gtccgcgctg gcgtcacgcc
      361 tgaactcaat gcattgtgtt caattacgtt cgttttatcg atgattctcg ttattatctc
      421 tcatcgcttg tcaggtaaat tgatatgaaa attttttcat tgctgctcgc tcttcttaca
      481 tttaaggcat tctccaatcc agtcgtcaat gtctatgcct ggggaggtga aatccctaaa
      541 aaaataattc atcaattcga acaagagtca ggaattaaag tcaatttttc gacttatgat
      601 agcaatgaaa ccatgtatgc caagctaaga gccagtcaaa agaccattta cgatgtcatc
      661 ctcccttccg cttattttgt agagcgcatg caaaaacaag gcatgttgca attactcgat
      721 cataaactgc ttccgaatct tcataatctg gatgaacaat ttgttaaaaa tgattatgat
      781 ccgggtaacc gttatagtat acccatcatc tggggagcaa ccgggatttt ctttaatcat
      841 aattccgtat cgaacccgcc aaaaaactgg caaggcttat gggataaaaa gtggcgtaat
      901 cagctaatgt tacttgatga ttcacgcgaa atatttgcca tagctctgat gagtttaggg
      961 tttgatccca atgataccaa tccaaaccac ataaaagcag cctatgaaca cttattgcaa
     1021 ttggtaccta atattaagtt atttgccagt gatagtattc aagccatcat gatagatgag
     1081 gatgctttta ttggatcagc atggaatggc gatgccttca aagcacatac ggaaaacaaa
     1141 gccattgagt ttatttatcc tcaagatggt tttgtgattt gggtagattg tttggctatc
     1201 cctaaaaacc ccccacacct gaaagaggcg tatcaattca ttaattttat tctgaaaccg
     1261 gaaacaagcg ctcaaattgc actaaaggaa ggacatgcaa ttaccaatgc cgcaggaaga
     1321 gctttattgc cattgcctat aaaaaataat cctgtggttt atccgccaga caaaacacta
     1381 aagaagggtt atttccaacg cgacatcggc gaagaaacac tagcgcttta taatcaatat
     1441 tgggaacagt taaaacttgc tttttagttt tctgttgtga agtagcgcta aatatccaga
     1501 tgaagtactt cattaactca acgaattaaa attcagaaag caaggttgct tgcatatttt
     1561 gtata
//
LOCUS       DACVWI010000366         1564 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.367, whole genome shotgun sequence.
ACCESSION   DACVWI010000366 DACVWI010000000
VERSION     DACVWI010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.367"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            23..1021
                     /gene="aph(9)-Ia"
                     /locus_tag="JBH85_15350"
     CDS             23..1021
                     /gene="aph(9)-Ia"
                     /locus_tag="JBH85_15350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(9)-Ia"
                     /protein_id="HAU0947564.1"
                     /translation="MLRNNIPDQHLIELLKVYYGIDIHTVQLIVGGADMNAFGYKADS
                     ESNSYFVKLKYGHHDEINLSIIRLLHDSGVKEIVFPINTLEANLFQQVDHVKIIVYPF
                     IDAPNGFTKNLTEKQWKQLGKILRQIHGTSVPTSIQQRLRKETYSPKWREIVRSFYSQ
                     LGFDERDDQITTDFKAFFNQNIDSIHQLVNSSGELSKKIQPDFEKYVLCHSDVHAGNV
                     LVVDEESIYIIDWDEPMFAPKERDLMFIGSGIGNVWNKPHEINYFYEGYGKTSIDKTI
                     LSYYRHERIVEDIAVYGHDLLSRDQNAQSRLESFKHFKSMFTPNDVVEIAFATGLI"
     gene            complement(1210..>1564)
                     /locus_tag="JBH85_15355"
     CDS             complement(1210..>1564)
                     /locus_tag="JBH85_15355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947565.1"
                     /translation="NYPEAKIKANELLISLRKNKDEAFSNPSLESLYDFADKSKQMIK
                     STISSLKRESGMEVFLSDLAEQILNTINTFLNNTLNSSASNRSGFFGFKSSYEKVIAQ
                     ELEKNIDKELKDFKP"
BASE COUNT          514 a          259 c          257 g          534 t
ORIGIN      
        1 ttccaaatag taattaactc ttatgctaag aaataacatt ccggatcaac acctcattga
       61 gcttttgaaa gtctattatg gaattgatat tcatactgta caactcatcg tgggtggtgc
      121 tgatatgaat gcctttggat ataaagcaga ttcagaatcc aattcttatt tcgtaaagct
      181 aaaatacggc catcatgatg aaattaattt atcaatcatc cgtctcttac atgactctgg
      241 agtaaaggaa attgtttttc ctatcaacac actggaagca aacttatttc agcaagtgga
      301 tcatgttaaa ataattgtgt atccatttat tgatgcgccc aatggcttca ccaaaaattt
      361 aacagaaaaa cagtggaaac agcttgggaa aatattaaga caaatccatg gaacctctgt
      421 tcccacctcg attcaacagc gattaagaaa agaaacttac tcacctaaat ggcgtgaaat
      481 cgttaggtct ttttacagtc aacttggatt tgatgagcgt gatgatcaaa taaccactga
      541 cttcaaagct ttttttaatc aaaatatcga ttcaatccat caattagtta attcttcagg
      601 agaactgtct aaaaaaattc aacctgattt cgaaaaatat gtactttgtc attcagacgt
      661 acatgcaggt aatgtgttgg tcgttgatga ggaatctatt tacattattg attgggatga
      721 gcccatgttc gcaccaaaag aacgtgattt gatgttcatt ggcagtggta ttggtaatgt
      781 atggaataaa cctcatgaaa tcaattattt ttatgaaggt tatggtaaaa caagcatcga
      841 taaaaccatt ttgtcttatt acagacatga gcgaattgtt gaagatatag ccgtgtatgg
      901 acatgacttg ctttcacgtg atcaaaatgc tcaatccaga cttgaaagtt ttaaacattt
      961 taaatcgatg tttactccaa atgatgtagt tgaaatagct tttgctacag gtttgatttg
     1021 atttggataa acacagaaga aaaaagatga accgtttaat ctcaaccctc ctctttttaa
     1081 tttcgtataa actttgaatt gcattaaatc acctgaaatt ttttatataa cgcatcccaa
     1141 ctttagtaag aagacgacat gactgtttgt gttatcgcaa tgataagctc ttgtaaataa
     1201 ttttaaattt tatggtttaa aatcttttaa ttccttgtcg atattctttt caagttcctg
     1261 ggctattact ttttcataag acgacttaaa accaaaaaaa ccactacgat ttgaggcact
     1321 tgagttcaat gtattattta gaaatgtatt tatagtattt agaatttgct cagcgagatc
     1381 acttaaaaaa acttccattc ctgactctct ctttaaagat gaaatggtac tttttatcat
     1441 ttgtttcgat ttatctgcaa agtcatagag cgactctagg gaaggatttg aaaatgcttc
     1501 gtctttattt tttctaagcg atatcaacaa ctcattggct ttgatttttg cctctggata
     1561 atta
//
LOCUS       DACVWI010000367         1559 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.368, whole genome shotgun sequence.
ACCESSION   DACVWI010000367 DACVWI010000000
VERSION     DACVWI010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.368"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..360
                     /locus_tag="JBH85_15360"
     CDS             <1..360
                     /locus_tag="JBH85_15360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAU0947566.1"
                     /translation="KDSSGRVIFVSMDNHAWQSKKVRPLGNYTERCTLYSPLLNIGDY
                     HIDIEFWPGNALENRLVVNSVVSFELKDGAVNEGVRGNWASDWPNSLIRPQLDWSIST
                     NKKQHLVLKEHELVTEK"
     gene            366..1523
                     /locus_tag="JBH85_15365"
     CDS             366..1523
                     /locus_tag="JBH85_15365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947567.1"
                     /translation="MNKYGGAIILLSFPHQLIHALAALFTDREQRRINKDAPIMIFIW
                     SYRWFDHKKNSPFLEIIKKLSKIENCQLYIPSLLQRVFGLSEFRALKQRVKYVNKIFP
                     LKDYDSFYYSHDFSADHTAQVFMQAFPNIYKVCFGDPPGFLYKNYSSVTECTEKIRSD
                     LKGLFWKSRLKNIHKWYGYDKAYVAMNLNVDAQNYSSILSTIPNERFIELLNKLKSKL
                     SNLEKEEHAFIETLESYNQNKIFQLLVLSNFTESGLITRENELQLYLELCHRHCSPGS
                     IIIIKPHILSNSAFLEALKNNLGKYRVIPLPESLRCIPLEMLTGLIYKCNIVSVSSSS
                     IFLSYLYGRKKIVHALTLNDVKKFFNKNSYQQMIESTQNIIDTLQGLQESK"
BASE COUNT          535 a          235 c          266 g          523 t
ORIGIN      
        1 aaagacagct ctgggcgtgt gatatttgtg tcaatggata atcatgcctg gcaatctaag
       61 aaagtacgtc cattgggaaa ttataccgaa cgatgtactt tgtattcacc cttattaaac
      121 attggcgatt atcatattga tattgaattt tggccaggta atgctttgga aaatcgattg
      181 gtagtcaatt cagtagtcag cttcgagttg aaagatggag ctgtaaatga gggggtaaga
      241 ggcaattggg cttctgattg gccaaactca ttgattagac cacagttgga ttggagtatt
      301 tcgacaaata agaaacagca tcttgtttta aaagagcatg aattagtcac tgaaaagtaa
      361 tcaacatgaa caaatatggt ggtgcaatca ttttactctc ttttccccat caattaattc
      421 atgctcttgc agcattattt actgatagag agcagcgcag aattaataaa gatgctccaa
      481 ttatgatatt tatctggtca taccgttggt ttgatcataa aaagaattca ccatttcttg
      541 agataattaa gaaattatcg aaaatagaaa attgccagct ttatattccc agtttgcttc
      601 aaagagtgtt tggattatct gagtttcggg cattaaagca acgagtaaaa tacgttaata
      661 aaatatttcc attaaaggat tatgatagct tttattattc acatgacttt agtgccgatc
      721 ataccgcaca agtattcatg caggctttcc ctaatattta taaggtttgt tttggtgatc
      781 caccaggctt tctttataaa aattatagct cagtaacaga atgtacggaa aaaattagat
      841 cagatcttaa aggtcttttc tggaaaagtc ggttgaaaaa tatacataaa tggtatggat
      901 atgataaagc ttatgtagca atgaatttaa atgttgatgc tcaaaactat tcctcaatct
      961 tatcgactat tccaaacgaa aggtttattg aattgcttaa taaattaaaa agtaagctct
     1021 ctaatcttga aaaagaggag catgctttta ttgaaacttt agaatcttat aatcaaaata
     1081 aaatatttca actgcttgta cttagcaatt ttactgaaag tggactgatt acaagagaga
     1141 atgaacttca attatatctt gaactatgtc accgtcactg ttccccagga tctattatta
     1201 ttataaagcc tcatatatta tcaaactctg ctttccttga ggcattgaaa aataaccttg
     1261 gtaaatatcg agtgattcct ttgcctgaaa gtttgcgatg tattccgttg gaaatgctaa
     1321 ctggactgat ttataaatgt aatattgttt ctgtctcctc atcctctatt tttttgtctt
     1381 atttatacgg cagaaaaaaa attgttcatg ccttaacttt aaatgatgta aaaaaatttt
     1441 ttaataaaaa tagttatcag caaatgattg aatcaactca aaatataata gatactttgc
     1501 aaggcttgca agaatcaaag tgatattacc taaattacat gcaagaataa tttaactaa
//
LOCUS       DACVWI010000368         1545 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.369, whole genome shotgun sequence.
ACCESSION   DACVWI010000368 DACVWI010000000
VERSION     DACVWI010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.369"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            129..992
                     /locus_tag="JBH85_15370"
     CDS             129..992
                     /locus_tag="JBH85_15370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HAU0947568.1"
                     /translation="MCYEFEMKEADTLQRFIFEHANIRGEIVHIEKTFQNIMNQRDYP
                     PMVKNLLGEALVSCLLLASSIKFEGNLSLQFQGDERLSLLLVQCDHNLNIRGFAKCAE
                     GLEIADYATAFLQGRMVITLSQDNQTQAYQSLIPIQSTSMSENLMTYFAQSEQIATRV
                     WLAVNEDMAAGMLLQLMPGQDTIQREQFWEYAVQLGQTVTEGELLTIDNQTLLYRLYH
                     ETELRIFESRSTRFQCRCNQEKMKQVITVLGEEEATDLIKEKGKIEITCDFCNQKYTF
                     DSIDVTLLFRK"
     gene            complement(1006..1503)
                     /locus_tag="JBH85_15375"
     CDS             complement(1006..1503)
                     /locus_tag="JBH85_15375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947569.1"
                     /translation="MKQLILHPTDISQWHALVNEAQAATRLILNENTESYLVFLLMRF
                     SQGTKLIESVVALDFLESMRKPRQLQVELLRDVGDKSLLFCGLFPGIAKKRHVSLSYF
                     SDMGQAAYLTVGELEENQTANLYLQLSEQFITLQQVLQAMRGEYIQFSQSSCGVLAEP
                     DLTMQ"
BASE COUNT          517 a          310 c          278 g          440 t
ORIGIN      
        1 caggaaaatt aaaaaataat taagatacgc tggttatgga aactactatt cctcttgtaa
       61 gattttgttc aaaataactg aactcagaaa aggcctgaga taaacatttt atgttagaat
      121 aggtctattt gtgttatgag tttgaaatga aagaagcaga taccttacag cgttttattt
      181 ttgagcatgc gaatatccgt ggcgaaatcg ttcatattga aaaaacattt caaaacatta
      241 tgaaccaacg tgattaccca cccatggtaa aaaatctttt aggtgaagcg ttagtctcat
      301 gtttactcct ggcaagcagc attaaatttg aaggaaattt aagtctgcaa tttcaaggtg
      361 acgaaagatt atccctgtta ctcgttcaat gtgatcataa tttaaatata agaggctttg
      421 caaaatgtgc agagggtctt gaaattgctg attacgcgac cgcttttctt caaggccgaa
      481 tggtcattac gctcagtcaa gacaaccaaa ctcaagccta tcaaagcctg atacctattc
      541 aatccacgtc catgagcgaa aatctgatga cttattttgc ccaatcagag caaattgcta
      601 ctcgtgtttg gttagctgtc aatgaagaca tggctgcagg tatgctatta caacttatgc
      661 caggtcaaga tacaattcaa agagaacaat tttgggagta tgccgttcag ctgggacaaa
      721 cagtaactga aggtgaattg ctgaccatag acaatcaaac actactctat cgtctttatc
      781 atgaaacgga attaagaata ttcgaaagcc gatctacccg tttccaatgc cgttgtaatc
      841 aggaaaaaat gaaacaggtc attactgtac tgggagaaga agaggcaaca gatttaatca
      901 aagaaaaagg aaaaatagaa atcacttgcg atttttgcaa tcaaaaatac acttttgatt
      961 caatcgacgt gactctacta tttcgcaaat aaaatgagcc tctgcctact gcatagtcaa
     1021 atcgggttct gccagaacgc cacaacttga ctgactaaac tggatatact ctcctcgcat
     1081 ggcttgtaat acttgctgca aagtaataaa ttgctcactt aattgcaaat acaaattggc
     1141 tgtctgattt tcctcaagct ctccgacagt caaataagcc gcttgcccca tgtcagaaaa
     1201 ataactcaaa ctcacatggc gttttttagc gatacctgga aataagccac aaaacaacaa
     1261 gcttttgtcc cccacatccc ttaataattc gacttgtaac tggcgaggtt tgcgcatgga
     1321 ttcaagaaaa tcaagtgcaa caacggattc gataagcttt gtaccttgag aaaagcgcat
     1381 cagcaaaaaa accaaataac tttccgtgtt ttcattcaat atcagtctgg tagctgcttg
     1441 cgcttcatta accagcgcat gccattgact aatatcagtg ggatgtaata ttagttgttt
     1501 cataaatacc ccccatattt acctcttact attagtctag caaac
//
LOCUS       DACVWI010000369         1535 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.370, whole genome shotgun sequence.
ACCESSION   DACVWI010000369 DACVWI010000000
VERSION     DACVWI010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.370"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..516
                     /locus_tag="JBH85_15380"
     CDS             <1..516
                     /locus_tag="JBH85_15380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947570.1"
                     /translation="SGLTIAKSSYQIDLILFAQPQNGVKSIKSDSPVPLIPVSPNAIQ
                     LHSDNNKKHMPYTLLPRSQSKLSDQHYLLSRKSQFQILGHYSWRQPAKSDSLVALPKI
                     NHNGWQIQGTLKVRQSNYYLFDADLQCLSPGNQETSFTVSQKQRLKGSTIYYLDHPQL
                     GMLVKIHKIAS"
     gene            complement(564..1454)
                     /locus_tag="JBH85_15385"
     CDS             complement(564..1454)
                     /locus_tag="JBH85_15385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0947571.1"
                     /translation="MNLRDLHYFVILADVKHFGEAAKRCFVSQPTLSMQIKKLEEELG
                     VVLFERTNKQVLLTDQGSKLLDRTRKILILIDEMKELARQSEDLFTGELRLGVIPTVS
                     PYMLPLVMPELKNEYPRLKVWLIEDQTHRLITKLEQGELDVAIMALPIDKRFSCQTLY
                     EEKFYFACANTHPLAQAKSVNINDLKNQPIMLLEEGHCLREQAMAVCQSAKADDIADF
                     TATSLETLRLMVQAGMGVTLLPALSTLTASTNHLKCIPFSEPAPSRILGLFWRAGTPR
                     QVCFNAIAELITKNVQSKLA"
BASE COUNT          494 a          315 c          255 g          471 t
ORIGIN      
        1 tcgggactta cgatagccaa atcaagttac caaattgatt taatactctt tgcacaacca
       61 caaaacggtg ttaaaagcat aaaatcagat tcgcctgttc ccctcattcc tgtcagtcca
      121 aatgctattc aactgcattc ggataataat aaaaaacata tgccttacac tcttctaccg
      181 cgatcgcaat caaaactaag tgatcaacat tatcttttaa gccgtaaatc ccaatttcaa
      241 atcctgggtc attattcctg gagacaacca gcgaaaagtg acagtttggt tgcgctacct
      301 aaaatcaacc ataatggatg gcaaattcaa ggtaccctca aagtgcgtca aagtaattac
      361 tatctatttg atgctgacct gcagtgtttg tctccaggta atcaggagac ttcttttact
      421 gtttcgcaaa aacaacgctt aaaaggaagc acaatttatt atcttgatca tcctcagtta
      481 ggaatgctag ttaaaattca taaaatagct tcatgaaagc tcatccagct aagcaggaat
      541 ttacgtataa tttataataa tttctatgct aatttggatt gaacattttt tgttattaat
      601 tcagcaattg cattaaaaca aacttgtcgt ggcgttcctg ctcgccaaaa taaccccaag
      661 atacgagagg gtgccggctc agaaaaagga atacatttta aatgattagt tgaggcagtt
      721 agtgtagaca aagcgggcag taaagtgacg cccattccag cttgtaccat taatctcaag
      781 gtttccaaac tggtggcagt aaaatctgca atgtcgtcag ctttcgctga ttggcatacg
      841 gccatggctt gctccctcag gcaatgccct tcttctagca acataatcgg ctgatttttt
      901 aaatcattga tattaactga tttggcttgg gccaaaggat gagtatttgc gcaagcaaaa
      961 tagaactttt cttcatataa agtttgacat gaaaaacgct tatctattgg aagtgccatg
     1021 atagcaacat ccagttctcc ttgctccaat ttagtaatta gcctatgagt ttgatcctct
     1081 attaaccaaa ctttcaggcg agggtactca tttttaagtt cgggcattac caagggcaac
     1141 atgtaaggcg atacggtagg tataaccccc aaacgcaatt cacctgtaaa tagatcttcc
     1201 gactgacgag caagttcttt catttcatca atcaggatta atatttttct agttcgatct
     1261 aataatttgg agccttgatc agtcagtaaa acctgtttgt tggtacgctc aaataacaca
     1321 acacctaatt cttcttccag cttttttatt tgcatactca aagtgggttg acttacaaaa
     1381 cacctcttag cggcttcacc aaaatgcttt acatctgcca ggatgacaaa ataatgtaaa
     1441 tctcttaaat tcataatttc tcaataataa aaaatctatt gtgacataaa ttacaaatct
     1501 gcagtataga aatcattttt caaattttac aaaat
//
LOCUS       DACVWI010000370         1530 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.371, whole genome shotgun sequence.
ACCESSION   DACVWI010000370 DACVWI010000000
VERSION     DACVWI010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.371"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(1..223)
                     /locus_tag="JBH85_15390"
                     /pseudo
     CDS             complement(1..223)
                     /locus_tag="JBH85_15390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101389.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            347..1222
                     /locus_tag="JBH85_15395"
     CDS             347..1222
                     /locus_tag="JBH85_15395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011214442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
                     /protein_id="HAU0947572.1"
                     /translation="MDKLIELFCVVDDFCQKYMPRFEQHLINISGKTRRKPCSMSMSE
                     IMTIVIHYHQSNYRNFKSYYLFVLQKNLHPYFPSLVSYSRMTELMSSCLVPLMAFCHH
                     QTKTPTGIYFVDSTPIEVCNVKRASQNKVFKGLAEKSKSTMGWYFGFKLHLIVNDKGE
                     LMAFKITSSRTDDRFVVPNLSENLFGKMIGDKGYISQNLTDKLAERGLQLLTKARKNM
                     KQKVLNTFDKALLRKRAIVESVIDQLKNISNIEHSRHRSIFNFMVNILAGLAAYALKP
                     KKPSLNIQRSFMAVA"
     gene            complement(1245..1530)
                     /locus_tag="JBH85_15400"
                     /pseudo
     CDS             complement(1245..1530)
                     /locus_tag="JBH85_15400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843562.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
BASE COUNT          522 a          258 c          261 g          489 t
ORIGIN      
        1 tatatatttt gattatcttt ttagcagtat ttaagccttt tggaagagac gtaataatta
       61 tccatggctc cttagctcct ttagcatatt tcttactatt gcctgattga cactttactc
      121 cttgaagcgt cttttttata cgacctttac tacgttcctt atagatataa aggtttgcat
      181 taagtggatt tgctctggca acggtcgccc gatttaggta tttaacgtga attcgatata
      241 actgtctaaa aaacaaactt aagaatggta acatattgaa aaaccagacc atttgtgatc
      301 ttattcgttt tttcgaagaa caaaaataag aatcaagagg tctggagtgg ataaattaat
      361 agaattattc tgtgttgtcg atgatttttg ccaaaaatat atgccacgat ttgagcaaca
      421 tctgataaat atttcaggta agaccagaag aaaaccatgc agcatgagca tgtcagaaat
      481 tatgactatt gtaattcatt atcatcaatc aaattaccga aattttaaaa gttactactt
      541 gttcgtgttg cagaaaaatt tacaccccta ttttccaagc ttggtgagtt acagcagaat
      601 gacagaacta atgtcttctt gtctggtacc cttaatggcc ttttgccacc atcaaacaaa
      661 aacacccact ggaatttact ttgtagattc aacaccaata gaggtgtgca atgtaaaaag
      721 agcaagccag aacaaggtct ttaagggttt ggcagagaag tccaagtcca caatgggatg
      781 gtatttcggc tttaagcttc atttgatagt caatgacaaa ggcgaattaa tggcttttaa
      841 aataacatca agccgaactg atgaccgatt tgtcgttcct aatttgagcg aaaatctgtt
      901 tggtaaaatg attggcgata aaggttatat ttctcaaaat ttaactgaca aattggctga
      961 gcgaggatta caactcctta ctaaagccag gaaaaacatg aaacaaaaag tactcaatac
     1021 atttgataaa gctttgctta gaaaaagagc cattgttgag tcagttatcg atcaattgaa
     1081 aaatatttcc aatattgaac attcaaggca tcgctctata ttcaatttta tggtcaatat
     1141 attggccggt ttagctgctt atgcacttaa accaaagaag ccctctttaa atattcaacg
     1201 atcttttatg gctgttgctt gagcagttat atcgaattca cgttaaaata attaattgga
     1261 ataagagtgt cagacggaag gctattatca gcaaatagaa ttccaatata aaaaccatca
     1321 ataatgatat ttttgactat aatattttgt ctgttataag caacaatacc tctagataag
     1381 gtagttgagg tcccaggccc ctttaaaaga taaccattcc catctaatat aacattatta
     1441 gcctgaataa taatcgcatc ataatcagaa attggggtgt acatattttg atttaagcac
     1501 catttcccag aatgtttaat aacgaaagga
//
LOCUS       DACVWI010000371         1514 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.372, whole genome shotgun sequence.
ACCESSION   DACVWI010000371 DACVWI010000000
VERSION     DACVWI010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.372"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1358
                     /locus_tag="JBH85_15405"
     CDS             <1..1358
                     /locus_tag="JBH85_15405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HAU0947573.1"
                     /translation="TLETKVRCHLTALGRFIENNQITRIDLLKIDVEGAELDVINSIK
                     PEQFSLIKQLSIEVHDIDNRVEKLVSYLQKQGYITYVDRNPIFAELGFNHHMIYAKLP
                     EPAIITLSEEANNSENYIEARQYFYGLLAGGVRIKLLESMFDLDLFRLFTGKPYLLEN
                     DIIKRLELKPVRAKKWLHLLCCEDFLKKIMVGSQVGYQLAKSQLMLGEGYWGFKQYYD
                     FYWQRMANEKLSNILRFTDPKFNVSWPPKTAEEANFLETWMTKTATPLIQTLLACLDL
                     NQYRSILDVGGGDGTIACALAQAYPHLKITVYNLPESAKIAQKNIDAMGLQKRISVFS
                     GDFINDEQFPAGFDLILFVRVLWDWDNSRKRKLLNMAYHALKRKGHVAICEGFKELCY
                     DLCLTWEYSYIFADGFDAEVFKTSDEYKIMLQQIGFTPIPIKSISPSEPVPGTVVLAE
                     K"
BASE COUNT          482 a          235 c          308 g          489 t
ORIGIN      
        1 agactttaga aaccaaagtg agatgccacc tgactgcatt agggcgtttt attgaaaata
       61 atcagatcac tcgtatcgat ttactaaaaa ttgatgtgga aggtgccgag cttgatgtaa
      121 taaacagcat aaagccagag cagttttcgc ttattaaaca actaagtatt gaagttcatg
      181 atattgataa tcgggttgaa aagctcgtct cctatctaca aaagcaaggt tatattactt
      241 atgttgatag aaacccaatt tttgcagagc tgggttttaa tcatcatatg atctatgcca
      301 aattgcctga accggcaatt atcacactaa gtgaagaagc aaataattct gagaattata
      361 ttgaagcacg ccagtatttt tatggactcc ttgctggtgg ggtgagaatt aaactactgg
      421 aatctatgtt tgatcttgat ttgtttcgtt tgttcacggg caaaccttat ttattggaaa
      481 atgacattat caagagactt gaactgaaac ctgttcgagc aaagaaatgg ctacatttgc
      541 tttgttgtga agatttttta aaaaaaatca tggtcggttc gcaagtcggg tatcaattgg
      601 caaaaagtca attgatgtta ggggaggggt attggggatt taaacaatat tatgattttt
      661 attggcagag gatggctaac gaaaaattaa gtaatatatt gcgttttact gatccaaagt
      721 tcaatgtttc ctggccaccg aaaactgctg aggaagctaa ttttcttgaa acatggatga
      781 caaaaacagc aacaccactt atacaaactt tattggcttg tcttgattta aatcaatatc
      841 gatccatatt ggatgttggg ggcggggatg gcactattgc ctgtgcactg gctcaggcct
      901 acccccattt aaaaattacc gtttacaatt tacctgaatc agcaaaaata gctcaaaaaa
      961 atatagatgc aatgggatta cagaagcgaa ttagtgtatt ttcgggtgat tttattaacg
     1021 atgaacaatt tcctgcagga tttgatttga ttttattcgt gcgtgttttg tgggattggg
     1081 ataattccag aaaaaggaaa ttattaaata tggcttacca tgctttaaaa aggaaaggtc
     1141 atgttgctat ctgtgaaggc tttaaagaac tttgctatga tctttgtctg acatgggaat
     1201 acagctatat ttttgcagat ggatttgatg cggaagtttt taaaacgtca gatgagtaca
     1261 aaatcatgct gcagcaaata ggttttactc ctattccaat caaatccatt tctccttccg
     1321 agccagtgcc tgggacggtt gtattggcag aaaaatagtt ttcatcagcc ataccgattg
     1381 tcatagaccc atgtaacaca actaagagct caaggttttc gtaattttga aaattataaa
     1441 acgcggttaa agtgttgtgt tagtctatta tattaaaatc ctactttaat aggattttaa
     1501 tgatttacta ttgt
//
LOCUS       DACVWI010000372         1497 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.373, whole genome shotgun sequence.
ACCESSION   DACVWI010000372 DACVWI010000000
VERSION     DACVWI010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.373"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..160)
                     /locus_tag="JBH85_15410"
     CDS             complement(<1..160)
                     /locus_tag="JBH85_15410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAU0947574.1"
                     /translation="MIFHQLFDQDSCTYTYLIGSTFSKHAIIIDPVRSQVSHYINLIN
                     KLELNLVAS"
     gene            372..1391
                     /locus_tag="JBH85_15415"
     CDS             372..1391
                     /locus_tag="JBH85_15415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAU0947575.1"
                     /translation="MIERAFSLLFIQFSIMQIQNTEINIGVIIVNYNSAHCLAKAITA
                     LEKQSYKPYQIILFDNSSIENLPEIVHTTKLPIKIVVSNINLGFAAGNNKAIEYLDPK
                     VNWIALLNPDAYPHKDWLLEMVSAIKTHPQYAFMGSKLICENEPYLLDGTGDVYHISG
                     KAWRLNHRKPLDKAPKDMQELFAPCAAAALYRRDAFNAVKGFDEKYFCYYEDVDLAFR
                     LWLAGYKGCYIPTAIAEHTGSAITKKHSDFYTYYGHRNLVWTYFKNMPLLLLIATLPL
                     HLLLNIATLLLFIKRKQTFVIIKSKIDAIKGLPALIQQRRHIQKSRILSNFQLLKILK
                     KGLPW"
     gene            1385..>1497
                     /locus_tag="JBH85_15420"
     CDS             1385..>1497
                     /locus_tag="JBH85_15420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAU0947576.1"
                     /translation="MVANFVTVVIVNYNSGEMLSKCVKHLLKSTVQVQIIIS"
BASE COUNT          535 a          250 c          238 g          474 t
ORIGIN      
        1 ttgaagcaac caaatttaat tctaacttgt taattagatt aatataatgc gaaacttgag
       61 atcgtaccgg atcaataata attgcatgct tgctaaaagt agagcctatc aggtaagtat
      121 aagtgcagga atcctgatca aatagctggt ggaaaatcat tttaccaatc cctataaaaa
      181 aactttttgt tattagccat gtttaataac ttgaattaat tgagtaaaaa tattttattt
      241 tttcatctgc gcaaaaatga aaataaattc acaatatata gcaaaaagac tgcatatcca
      301 ataaaaacaa agcattaatt taaatatcat taaagattaa aaaatgatat tcttggcata
      361 aactagagta aatgatagaa cgcgcttttt ctttgctctt catccaattt tcaattatgc
      421 aaattcaaaa tactgaaatt aatataggcg ttataattgt taattataat tcagcacatt
      481 gcctcgctaa ggcaattact gctttagaga agcaatcata caaaccgtat caaataatac
      541 tgtttgataa ttcgagcatt gaaaatttac ccgagatcgt ccacacaact aaattaccaa
      601 ttaaaattgt tgtatccaat attaacctgg gatttgcagc tgggaacaat aaggccattg
      661 aatatctaga tccaaaagtc aattggatag cattgcttaa tcctgacgcc tacccgcaca
      721 aggactggtt actagaaatg gttagtgcaa ttaaaactca cccgcaatat gctttcatgg
      781 ggtcaaaact aatttgtgaa aatgagcctt atctattaga tgggacaggc gatgtgtacc
      841 atattagcgg aaaagcatgg agattaaacc acagaaaacc attagacaaa gcccccaaag
      901 atatgcaaga actgtttgcc ccctgcgctg cagctgcctt gtatagacgt gatgcattca
      961 atgctgtaaa agggttcgat gagaaatatt tttgttatta tgaagatgtt gatttggctt
     1021 ttcgattatg gctagcaggt tataaaggat gttatattcc tacagctatc gctgagcata
     1081 caggctccgc cattacaaag aaacatagtg atttttatac ttattatggc catagaaatc
     1141 tagtttggac ctatttcaag aatatgccat tgttattgct tattgcaact ttacccttac
     1201 acctcctttt aaatattgct actcttcttt tattcattaa acgaaagcaa acttttgtaa
     1261 ttataaaatc taaaattgat gcgattaaag gtttgccagc actaatacaa caaagaaggc
     1321 acattcaaaa atcgagaatt ctttctaact ttcaattact aaaaatcttg aaaaaaggct
     1381 tgccatggta gctaatttcg taacagttgt tatagttaat tataattcgg gcgaaatgct
     1441 tagtaagtgc gtaaagcatc tattaaaaag tacagttcaa gttcaaatta ttatttc
//
LOCUS       DACVWI010000373         1476 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.374, whole genome shotgun sequence.
ACCESSION   DACVWI010000373 DACVWI010000000
VERSION     DACVWI010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.374"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            29..1453
                     /gene="sidA"
                     /locus_tag="JBH85_15425"
     CDS             29..1453
                     /gene="sidA"
                     /locus_tag="JBH85_15425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T4SS effector SidA"
                     /protein_id="HAU0947577.1"
                     /translation="MAKKYRTPIPLSDKMMTLKKNLQDQLTQSQSLGEQIHAGTTAAS
                     TITTGVSHVFNVIDSFLSAYRQIPLVGGILQLVATVAKSISIVSDPEKSIAEKIISSI
                     LIAAIIALSITAITLGGLAAAIIGTVIASTVTIMEGLGFFGKIAEKFQLANSYKMKKE
                     FIDLVAKRIEPDNDKYNDLLEIRAIELQHELEKSYPNQIEQQQLKEELNFINTVLRKK
                     NITPGNNKENDAYKLNQLYAKRAEQLKTLVDKIALINPTGKRAEQNKLLSEIKSLQKE
                     ITKTDDSIEEIIAPLAKIERDNLKSTINLPLSYSTFAIAAASTLISIAGLLVVAGVIA
                     APPIMVPIMFAVGSVMAIIGLIKWTAEKMAEIEDAQLKAEETAKHEDAVLDEALNVYE
                     QQLNLELVSPANPARQVKNILTVQDKVPALSPTESTVSSLDSRFTLFGSSSREHTKIA
                     EQKTNDTTNEQAPTTFDSISKPTR"
BASE COUNT          531 a          288 c          268 g          389 t
ORIGIN      
        1 tttactaagt gtctttaggg ttctttttat ggccaaaaaa tatcgaacgc ccattccatt
       61 gtcagacaaa atgatgactc ttaaaaagaa tcttcaggat caactgacac aatcccaatc
      121 gttaggtgag caaattcatg ctggaactac ggcagcatca acaataacaa cgggagttag
      181 tcatgtgttt aatgtcattg actccttttt aagcgcctat cgacaaattc cactggtagg
      241 cggaatactg caactagtgg ccacagttgc caaatcaatc tcaattgtga gcgacccgga
      301 aaaatctatt gctgaaaaaa taatatcgtc gattctaatt gctgctatta tcgccctttc
      361 tattacagcg atcacgctag gtgggctggc tgccgcaatc atagggacag tgattgcctc
      421 tactgtaacc atcatggaag gattaggatt ttttgggaaa attgctgaaa aatttcaatt
      481 ggcaaattcc tacaaaatga aaaaagaatt tatagatctt gtagcgaaac gtatagagcc
      541 agacaatgat aaatataatg acttattaga aattcgtgcc atagaactcc aacatgaact
      601 tgagaaatct tatcccaatc aaattgaaca gcaacaatta aaagaagagt tgaatttcat
      661 taatacggta cttaggaaaa aaaatatcac cccgggaaac aacaaagaga atgacgctta
      721 caaactaaac caactctatg ctaaacgtgc tgagcaatta aaaacccttg tagataaaat
      781 tgctttaatc aatccaactg gaaagagagc tgagcaaaac aaacttttaa gcgaaatcaa
      841 atcattacaa aaagaaataa ccaaaaccga cgatagcata gaagaaatca tagccccgct
      901 tgctaaaata gaacgagaca atttgaaatc taccattaat ttgccattaa gttacagcac
      961 ctttgctata gcagcggcca gtactttaat atcgatagcc ggcttattgg tggtggctgg
     1021 cgtgattgcc gcacctccga ttatggtccc tatcatgttt gcagtaggta gtgttatggc
     1081 aatcattggt ttaatcaagt ggaccgctga aaaaatggct gaaatagagg atgctcaatt
     1141 aaaagcagaa gaaactgcga aacacgagga tgcagttttg gatgaagcat taaacgttta
     1201 tgagcaacaa ttaaatcttg agttagtcag ccctgcaaac cctgcgagac aggtgaaaaa
     1261 tatattaaca gttcaagata aagtgcctgc tttgtcgcca actgaaagta ctgtaagctc
     1321 attagattcc agatttactt tatttggctc atcttctcga gagcacacaa aaatagcaga
     1381 acagaaaacc aatgatacaa ctaatgaaca agcacctaca acttttgatt ccatatccaa
     1441 accaactcgt taacaaatat aacaactttt tataat
//
LOCUS       DACVWI010000374         1474 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.375, whole genome shotgun sequence.
ACCESSION   DACVWI010000374 DACVWI010000000
VERSION     DACVWI010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.375"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            218..919
                     /locus_tag="JBH85_15430"
     CDS             218..919
                     /locus_tag="JBH85_15430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HAU0947578.1"
                     /translation="MQKVKRSIILILQATDRGFKLKTLVITGISRGIGLEIARIFLDK
                     DWTVIGTSTSGYSPIKHKNLRTYKLDLAISEHIDAFAKNLPKIDVLINNAAVLLEEWN
                     EEKINMSLLKKTFAINLFGTVELTEKCIPKFNDSAQIINISSGWGAFSSNNSPFQPHY
                     KMSKVSLNMYTKLLAERLPQITVSSFDPGWVKTNMGTQNAKKLPSETALEIYELISMK
                     KKSGYFWFNGKPRDW"
     gene            968..>1474
                     /locus_tag="JBH85_15435"
     CDS             968..>1474
                     /locus_tag="JBH85_15435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947579.1"
                     /translation="MTNVSFDFIKSIWIAALIGITPTLSYSESNIQYQETLQSHCFET
                     WMKKMDPSIDKETYKQFGDKYCRCISTKNLDNKTGVQKAIRNCMPQTILHDAMDELEE
                     EVTLSEVTTQTIEQYCLNRWSLIYPNQSDEDKKTIQAYCACVKTKLLSFIEQIEKISN
                     REYNEAIND"
BASE COUNT          566 a          232 c          257 g          419 t
ORIGIN      
        1 tatcaaaaaa tgttgtactg gcattaacca gcaattttaa ataatcaacg caatgaatct
       61 tatgcttgta tgagatattc cataaacatt aaaggacgca tcttcccttg gggcttaaga
      121 aaaatctcaa gatccaggta aaaaatgttt tttaggaggg aatttagata aaccaaatga
      181 ttgaattata aaattttttt aactaagaga ttgagttttg caaaaagtta aaagatcaat
      241 tattttgatt ttacaagcca cggatagagg atttaaattg aagactctcg tcataacagg
      301 aatcagtaga ggtataggcc tggaaattgc tagaattttc cttgacaaag attggacggt
      361 tattggtact tccaccagcg gatattctcc tataaaacat aaaaacctac gcacatacaa
      421 gttagaccta gccatttcgg agcacatcga tgcatttgca aaaaatttac ctaaaattga
      481 tgtactgatt aataatgccg ccgtgttgct tgaagagtgg aatgaagaaa aaattaatat
      541 gtccttattg aaaaaaacct ttgcaattaa cctgtttggt acagttgagt taactgaaaa
      601 atgtatcccc aagttcaatg atagtgcaca aattattaat atctcttcag ggtggggagc
      661 atttagttcc aataattccc cctttcaacc acattataaa atgtcaaaag tcagtttgaa
      721 tatgtatact aaattgcttg cggaaagact tccccaaata actgtatcca gttttgatcc
      781 aggttgggtt aaaacaaaca tgggaacaca aaatgcaaaa aaacttccca gtgaaacggc
      841 actggaaatc tatgagctga ttagtatgaa gaaaaaaagc ggctattttt ggtttaatgg
      901 aaaaccaagg gattggtagc cagttaaatt tcagttattc tcaactataa aataaagcat
      961 caaaggagtg acaaacgtga gtttcgattt tataaaatca atatggattg cagctcttat
     1021 aggtataaca ccaaccttgt cttattcaga gtccaatatt cagtatcaag aaacactaca
     1081 atcacattgc tttgaaacct ggatgaaaaa aatggatcca tcaattgaca aagaaacata
     1141 taaacaattt ggagataaat attgtcgatg catttcaact aaaaatctcg ataataaaac
     1201 aggggttcaa aaagcaatta gaaattgcat gccacaaaca attttacatg atgccatgga
     1261 tgagctggag gaagaagtga ccttatcaga agtaacgaca caaacaatcg aacaatattg
     1321 tcttaataga tggagcctta tttatcccaa ccaaagtgat gaagataaaa aaacaattca
     1381 ggcttattgt gcgtgtgtca aaacaaaatt attaagtttt atagagcaaa tagaaaaaat
     1441 atcaaacagg gagtacaatg aagccattaa tgat
//
LOCUS       DACVWI010000375         1451 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.376, whole genome shotgun sequence.
ACCESSION   DACVWI010000375 DACVWI010000000
VERSION     DACVWI010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.376"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            19..726
                     /locus_tag="JBH85_15440"
     CDS             19..726
                     /locus_tag="JBH85_15440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HAU0947580.1"
                     /translation="MHIQIDGIPIEILRKPIKNLNLRIYPPDGLVKVSVPLKYSEQLI
                     KQQLQEKSKWIRAQCEQIRARSFYREPSLQTGATIPFKGKSYLLIVEEHYGPSQILIK
                     NELIYCYTKPDLTPQQKQNILDRWYRKEMNLVIPRLIQQWEAIMKVKINQWGIKKMKT
                     RWGSCNPRAQRIWLNLNLIKKPLECLEYVLVHEMVHILEASHNKRFYALMTQFMPKWQ
                     EYQRILEGTPNASTFAR"
     gene            911..1450
                     /locus_tag="JBH85_15445"
     CDS             911..1450
                     /locus_tag="JBH85_15445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HAU0947581.1"
                     /translation="MAYELKQQNLFRNAKIGQNLQAQQNDKIRSDQIFWIDADSPYPP
                     IQAYLKKLISLGNILNQTMYLGLAEFETHFAIYLPGTFYRKHIDQFESTKTRKISFVY
                     YLNDTWQKEFGGELLLYNIEDELIQNISPLGNRFVCFDSQLPHEVYPTQRTRFSMTGW
                     MKTRSTSVLADNKLTKITQ"
BASE COUNT          505 a          291 c          247 g          408 t
ORIGIN      
        1 caataagcat attttgctat gcacattcaa attgatggca ttcctataga aatactgaga
       61 aaacccatta aaaatttaaa tttgagaatt tatccacccg atgggttagt gaaagtgagc
      121 gtccctttaa aatacagcga acagctaata aaacaacagc tgcaggaaaa aagtaaatgg
      181 attcgtgccc aatgcgagca aattcgcgca cgatcttttt atcgtgaacc atcgcttcaa
      241 acaggtgcaa ccatcccatt caaaggtaaa agttatttat taattgttga agaacattat
      301 ggcccttctc aaatcctgat caaaaatgaa ttaatttatt gctatacaaa acccgattta
      361 actccacagc aaaagcagaa cattctggat cgctggtata gaaaagaaat gaatcttgtc
      421 attcccaggc ttattcaaca atgggaagcc atcatgaaag tcaaaattaa tcaatggggt
      481 ataaaaaaaa tgaaaacccg ctggggttcg tgtaatcctc gcgcacaaag aatctggctc
      541 aatcttaatt taatcaaaaa acctttggag tgccttgaat acgttcttgt tcatgaaatg
      601 gtgcatattt tggaagccag tcataacaaa cgattttatg cactcatgac acaattcatg
      661 cccaaatggc aagaatatca aaggatactg gaaggcacac ctaatgccag tacatttgca
      721 aggtaatcat cgaattcatt acctcattat ttccaaaaaa taattcttgg cgtacaatgc
      781 attatcactt tgcctgattg gtgtagacag gttgtttaat ccggacttaa tcgcccataa
      841 tatttgtact caaggctttc atatcattga tgaatttctg gaagaggcac actactgctc
      901 tttacgaaac atggcttatg aattaaaaca gcaaaattta ttcagaaatg ccaaaattgg
      961 ccagaactta caagcacagc aaaatgacaa gattagaagc gatcaaattt tctggataga
     1021 tgcagactcc ccttatccgc ccattcaagc ttacttaaaa aaacttatct ctttgggcaa
     1081 tattctgaat caaaccatgt atcttggttt agcagaattt gaaactcatt ttgcaattta
     1141 tctccctgga accttttata gaaagcacat tgatcaattt gaaagtacaa aaaccaggaa
     1201 aatatcattt gtctattatt tgaatgacac ttggcaaaaa gaatttggtg gcgaattgtt
     1261 actctacaat attgaagatg agctcattca aaacatttct ccattgggga atcggttcgt
     1321 ctgttttgat agtcaattac cgcacgaagt ctacccaact cagcgaacgc gcttcagtat
     1381 gacaggctgg atgaaaacac gctcaacctc cgtactggcc gacaataaac tgaccaaaat
     1441 aacccagtag c
//
LOCUS       DACVWI010000376         1449 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.377, whole genome shotgun sequence.
ACCESSION   DACVWI010000376 DACVWI010000000
VERSION     DACVWI010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.377"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(144..1445)
                     /gene="hemL"
                     /locus_tag="JBH85_15450"
     CDS             complement(144..1445)
                     /gene="hemL"
                     /locus_tag="JBH85_15450"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HAU0947582.1"
                     /translation="MGFSMSRSSDLFHKAQTIIPGGVNSPVRAFKGVGGEPVFFKSGK
                     GAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEAVDNVLHRGMSFGAPTELEIQLAEK
                     IASLMPSIEKIRMVNSGTEATMTAIRLARGFTNKNKFIKFNGCYHGHSDSLLVKAGSG
                     LLTLGIPSTPGIPQSITEHTLTADFNNLEQVAQLFEKYPNDIATVILEPIPGNMGFIL
                     PKIEFLKGLRELCDQYNALLIFDEVMTGFRVGLHGAQGLFGIKPDITTLGKIIGGGMP
                     VGALGGKREIMSFLAPEGPVYQAGTLSGNPLAMAAGLATLKEIEKINFFEDLSNTTNK
                     LTEALADAAENANIPFFAASLGGMFGFCFTDKNSVENYLDVASSDEVLFKKFFHAMLA
                     QGVYFAPSMYEAGFVSSMHGDLEIQKTYDAAELVLNQLKSA"
BASE COUNT          467 a          300 c          242 g          440 t
ORIGIN      
        1 ttaattattt aaaattgcag ttaaccagat ttaaaaatct gttctgcaat cgcatttaga
       61 cgctttactg aacttaatta cccaaatact gattttaaaa attgtattta agtaacttaa
      121 ggtaataagg tacaattctg ctatcaggca gattttaatt gattcagtac caattcagca
      181 gcatcatatg ttttttgtat ttccaaatca ccatgcatac tggagacaaa tcccgcttca
      241 tacatagatg gcgcaaaata tactccttga gcaagcatag catgaaaaaa tttcttaaat
      301 aaaacttcat ccgaggaagc aacatccaaa taattttcaa cactattttt atctgtaaaa
      361 caaaacccga acattccgcc caatgatgca gcaaaaaatg gaatgtttgc gttttctgcc
      421 gcatcagcta atgcctcggt taatttatta gtcgtattgc ttaaatcttc aaaaaaatta
      481 attttttcaa tctcttttaa agtagccaaa cctgcggcca tagccaatgg atttcctgaa
      541 agagtaccag cctgatatac agggccttca ggcgccagaa aggacataat ttcacgttta
      601 ccacctaaag cacctacagg cataccacca cctatgattt ttccaagtgt tgtgatatca
      661 ggtttaatcc caaacaagcc ctgtgcacca tgtaaaccaa ctctaaatcc agtcattact
      721 tcatcaaaaa ttaacaaagc attatattga tcgcaaagct cgcgtaatcc ttttaaaaac
      781 tctatcttag gtaggataaa tcccatattg ccaggaatag gttccaaaat tacagtagcg
      841 atatcgtttg gatatttttc aaagagttga gcaacttgtt ccaggttatt aaaatcagcc
      901 gttaaagtat gttcggtaat gctttgtgga atgcctggag ttgaaggaat tccgagagta
      961 agcaaaccag atcccgcttt aactaatagg ctatcgctat gcccatgata acagccgtta
     1021 aatttaataa atttattttt attggtgaat ccgcgcgcca gccgaattgc agtcatagtt
     1081 gcttcagttc ctgagttcac catgcgaatt ttttctattg atggcatcag ggaagcaatt
     1141 ttttcagcta attgtatttc cagttctgtt ggagcgccaa agctcatacc acggtgtaat
     1201 acattatcca cagcttctat caccttggga tggcagtgtc cgaggataag tggtccccat
     1261 gatccaacat aatcaatata ttgtttatca tctacatccg tcaggtaggc acctttgcca
     1321 gatttgaaaa aaacaggttc acctccaaca cctttgaaag ctcgaactgg tgagttaaca
     1381 cctccgggaa tgattgtttg tgctttatga aataaatctg aagaacggct catagaaaat
     1441 cccaaaaat
//
LOCUS       DACVWI010000377         1441 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.378, whole genome shotgun sequence.
ACCESSION   DACVWI010000377 DACVWI010000000
VERSION     DACVWI010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.378"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..549)
                     /locus_tag="JBH85_15455"
     CDS             complement(<1..549)
                     /locus_tag="JBH85_15455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947583.1"
                     /translation="MPMSDFVYVLMERRSRNKTSEFVFQAESKTGYIYEPKKEVNRAV
                     ESSGVTYTLRFHMMDVFFVLVFLFSLLSSNAYSEKVHSISLLTYPVEAIYVINNPRTG
                     EMVIGSDYHGACNLCGIDSPGVELAYKAPRNVLNDGTDYSNGACFGDGVDLKVNGENA
                     YRYKARFKLANKNHNVLSVIEPP"
     gene            complement(583..756)
                     /locus_tag="JBH85_15460"
                     /pseudo
     CDS             complement(583..756)
                     /locus_tag="JBH85_15460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947275.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            complement(897..1208)
                     /locus_tag="JBH85_15465"
     CDS             complement(897..1208)
                     /locus_tag="JBH85_15465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HAU0947584.1"
                     /translation="MQIIKSSLFNGDFPWQALDIAQISDASIRLHWADQPYIWHKNDG
                     DEVFVVLSGKVIMHYREGGVENQKELNSGDICYLKEGCEHVAYPKGAARILVIEKIGS
                     I"
BASE COUNT          449 a          299 c          202 g          491 t
ORIGIN      
        1 tggtggttca attacagaaa gaacattatg atttttatta gcaagcttaa atcttgcttt
       61 atatctataa gcattttctc catttacctt caaatcaacc ccatccccaa aacatgcccc
      121 atttgaataa tcagttccat cgtttagaac attcctggga gctttatacg ctaattctac
      181 ccctggggaa tcgattccac ataagttgca agccccatga taatctgagc caatgaccat
      241 ttcaccggtt cttggattat tgatgacgta tattgcttca acaggataag ttaatagaga
      301 aatactatgc actttttcgc tatatgcatt actagataac aagctgaaca aaaataccag
      361 tacgaaaaaa acatccatca tatgaaaccg caaggtatat gttacgccag acgactccac
      421 cgccctattc acctcttttt taggttcata gatatagccg gttttacttt cagcctggaa
      481 tacaaattca ctggttttat ttcggcttct gcgttccatt aacacataga caaaatcaga
      541 cataggcaag atgtatttct tgatttttgg gtctattcgc gcctaatttg aaatcatttt
      601 gtttaaatca gattgcaata taaaatcttt aaacaattga tgtatataaa gaacgctttt
      661 ttctttgtga cataccatat aatactcatt atccacatta agccaatcag gtaatacctt
      721 aaccaacgtt ttgtgtttca aagcatctga acataatcgg cagtgcagaa aactctttga
      781 aatattcccc tggcttgcct tttaattttt taaatttagg agtttttaac ttgcctgcag
      841 agtcactcat caataaatat ccttttttgg agattacctg aaaacataaa tcaattttaa
      901 atactaccaa ttttctctat gacaagtatt cttgcagccc cttttggata agctacatgc
      961 tcacatcctt ctttcaaata acatatgtct ccactattta attctttttg attttctaca
     1021 ccaccctcac ggtagtgcat aatcactttt ccagacagca caacaaaaac ctcatcccca
     1081 tcattcttat gccaaatata tggttgatct gcccaatgaa gtctaatgct cgcatcagat
     1141 atttgagcaa tatctaatgc ttgccatgga aaatcgccgt taaataatga tgatttaatt
     1201 atttgcatat taccttacgc ttattaaatt ttagtggttt tagattctgg ctagcagcca
     1261 gaacgaataa tcctttttgc tccaatttcc taactcaatt ataatcactt tcaacttgtt
     1321 ctttcgattc atggcgtaga gttaatagac caggcatggg aaaaagatcg actgttttct
     1381 taagatactt accaggtcga acgttaaggt taagcgttac aaaactaatt aattttttaa
     1441 t
//
LOCUS       DACVWI010000378         1408 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.379, whole genome shotgun sequence.
ACCESSION   DACVWI010000378 DACVWI010000000
VERSION     DACVWI010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.379"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..214)
                     /locus_tag="JBH85_15470"
     CDS             complement(<1..214)
                     /locus_tag="JBH85_15470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947585.1"
                     /translation="MFMSYYESKNNFESFVAKCIHTSRAFANIPSKSQQHFYSSVLFT
                     KMCVTAKTLLSVLPDREDGHWDYASAA"
     gene            complement(236..784)
                     /locus_tag="JBH85_15475"
     CDS             complement(236..784)
                     /locus_tag="JBH85_15475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAU0947586.1"
                     /translation="MRVGYARVSTHEQNLDLQLDELKKAGCEQIFTDKISGSVSERPG
                     LEKVENFLREGDVLVVWRLDRLGRSLKHLISYVSKLEEKGIGFHSVTEAINTETPSGK
                     FMFHVFGALSEFERNLIKERTLAGLEAARARGRQGGRPEKLSDEQKELVKTLYANKKH
                     SIQSICKMVGVGKTTLYKYINQ"
     gene            complement(1014..1250)
                     /locus_tag="JBH85_15480"
     CDS             complement(1014..1250)
                     /locus_tag="JBH85_15480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1653 domain-containing protein"
                     /protein_id="HAU0947587.1"
                     /translation="MLADPIIYGKYRHYKNEKLYEVIGRARHSETDEEMIVYRALYHC
                     DQFGDNQLWVRPMQMFFENVIHHGKTVPRFQRIE"
BASE COUNT          433 a          284 c          217 g          474 t
ORIGIN      
        1 acgcagctga tgcataatcc caatgtccat cttctctatc aggaagtact gataatagag
       61 tttttgcagt tacacacatt tttgtaaata atacagaaga ataaaaatgc tgttgcgatt
      121 tagaaggaat atttgcgaaa gcacgtgagg tatgtataca ttttgcgacg aaactttcaa
      181 aattattttt tgattcataa tagctcataa acatccttat tcaatattaa aaatctcact
      241 ggttaatata tttgtaaagt gtagtcttcc caacaccgac catcttgcag atagattgaa
      301 ttgaatgctt tttattagcg tacagtgttt ttaccagctc cttctgctca tcactgagtt
      361 tttctggtcg tcccccttgc cgacccctag ctcttgcagc ctcaagtcca gcaagagtac
      421 gctcttttat taaattacgt tcaaactcag aaagggcacc aaatacatga aacataaatt
      481 ttccagaagg agtttcagta ttaatagctt ctgttacact atgaaaacca attccctttt
      541 cttccaactt acttacataa gaaataaggt gtttgagaga tcgccctaac ctatccaatc
      601 gccaaacaac taaaacatct ccttctctaa gaaaattttc gactttctct aatccggggc
      661 gttcggatac tgaaccacta attttatccg taaaaatttg ttcacatcct gctttcttta
      721 actcatcaag ttgcaagtct aaattttgtt catgtgtgga aactctggca taccctactc
      781 tcattattat tccctttgtt cagaaagact aaaagaatag attaaaatga actttgatta
      841 atgtatagag ttttcgaact ggtttttgca gtgaattaca aatttttgag catcaatttc
      901 gggcgtccac aaacccatca ttttacgaat cataacgaca aatgggttcg ttttgcctta
      961 atactattat tcttcagcaa ctcaattagc tagcataagt aattaaatta atactattct
     1021 attcgttgaa atcgaggaac tgtttttcca tgatgaatga cattctcaaa aaacatttgc
     1081 atagggcgaa cccaaagctg gttatcacca aattgatcac aatgataaag tgccctatac
     1141 actatcatct cttcatctgt ttcactatga cgcgctcggc caatgacttc atataatttt
     1201 tcgtttttat aatgcctgta ttttccatag ataattggat cagctaacat ttacactctt
     1261 gtgattaata gccattagtt ttcactgact ggtttatact actattgcat cggtaccaaa
     1321 actggtacca aatatttctg acggggtatg gataatttta taaaaccctt actgggcttg
     1381 gtcgggacgg aaggatttga accttcga
//
LOCUS       DACVWI010000379         1389 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.380, whole genome shotgun sequence.
ACCESSION   DACVWI010000379 DACVWI010000000
VERSION     DACVWI010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1389
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.380"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..145
                     /locus_tag="JBH85_15485"
     CDS             <1..145
                     /locus_tag="JBH85_15485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0947588.1"
                     /translation="KIIQKGIETAEQHEVIKSLGCQYAQGYFYCKPVALNDLLPLIKK
                     TIH"
     gene            286..945
                     /locus_tag="JBH85_15490"
     CDS             286..945
                     /locus_tag="JBH85_15490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947589.1"
                     /translation="MPFCFSNQPNILNNKLILKIVVLILFFSNSSLAKTINYPWTVSA
                     SLGYVNYQYVHEGDHITATGRFAIGRDLLMKGPFLFGLELGLQSGNQMRLQMTEEEVD
                     ALGGLLVQTTLKPMVDALATIRITPEFTAPLFLQLKAGTAYRQWQMDRDTINDISQLA
                     GEIMAGCGYSITPNASITLSYQGLFGDKPNFTIDLESGIGHVQKIPVQHAILLGIVLM
                     I"
     gene            1113..>1389
                     /locus_tag="JBH85_15495"
     CDS             1113..>1389
                     /locus_tag="JBH85_15495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen-like protein"
                     /protein_id="HAU0947590.1"
                     /translation="MIHRNKVLNSILLILFTSQIAFAKSNPASQAYVDSKVSELKNEL
                     TNKINSIPSGPQGPQGPRGDKGEAGPKGDQGEAGPQGLPGPKGDRGEA"
BASE COUNT          474 a          267 c          266 g          382 t
ORIGIN      
        1 taaaatcatt caaaagggta ttgaaactgc agaacaacat gaagtgatta aatctttagg
       61 atgccaatac gcacaaggat atttttactg caaacctgtt gccttaaatg atttactgcc
      121 acttataaaa aaaactatcc actaagtaat taataattca acctaatttt atggcatcaa
      181 acgcaataat cttataagat tctaactgtt ttgaaccatt acttagacag tttttcgtca
      241 taattaattg atataagaat catacattgc aatggaagtg accttatgcc tttttgtttt
      301 tccaaccaac caaatatttt aaataacaaa cttattctaa aaatagttgt gcttattctc
      361 ttctttagta attcgagcct tgcgaaaaca atcaattatc catggacagt ctccgcaagc
      421 ttggggtatg tcaattatca atacgtacat gaaggcgacc atattaccgc aacaggtcgg
      481 tttgcaatag gaagagattt gttgatgaaa ggtccctttt tatttggact tgaattaggt
      541 ttacaaagtg ggaatcaaat gcgactgcaa atgacggaag aagaagtcga tgccctcgga
      601 ggacttttgg tacaaaccac cttgaaacct atggttgatg cattagctac aatccgtatt
      661 acccctgaat ttaccgcccc tttgtttcta caactgaaag caggaaccgc ctacaggcaa
      721 tggcaaatgg atagagacac gatcaatgac atctctcaac ttgcaggcga aataatggct
      781 ggatgtggtt attcaattac accaaatgcc agtattaccc tatcgtatca aggcctattt
      841 ggagacaaac caaatttcac tattgatctg gaaagtggca ttggccatgt acaaaagatt
      901 cctgttcaac acgccatttt gttaggtatt gttttaatga tttaactaat ttttctaata
      961 gatctcttgc ataacctgct tattttgttt tagggcaagg tacaaacgtt ttgaggagta
     1021 ggatttacaa gcagtaaatg agcaccgcag aaacgcttgc aacgcagcag taaaataaaa
     1081 gagacaagtg agcataaagt gggaaataaa gaatgataca tcgaaataaa gtccttaata
     1141 gcattttatt aatcttattc acatcacaga tagcatttgc caaaagcaat ccggcctcgc
     1201 aagcctatgt ggacagcaag gtatctgaac taaaaaatga attaaccaac aaaatcaaca
     1261 gtatcccctc tggacctcaa ggacctcaag gacctagagg agataaaggc gaggctggcc
     1321 ctaaaggaga ccaaggagag gcagggccgc agggattacc cggacctaaa ggagaccgag
     1381 gggaagcag
//
LOCUS       DACVWI010000380         1381 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.381, whole genome shotgun sequence.
ACCESSION   DACVWI010000380 DACVWI010000000
VERSION     DACVWI010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1381
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.381"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..318
                     /locus_tag="JBH85_15500"
     CDS             <1..318
                     /locus_tag="JBH85_15500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0947591.1"
                     /translation="KEMGIQISIDDFGTGYSCLSYLKDLPIDILKIDQTFVKDLKNNQ
                     SNQTLIKAIIAMAKKFNLSLIAEGIENQYQLEFLKKLGCHYGQGYYFSHPKPTEKCMQ
                     FLQ"
     gene            complement(320..889)
                     /locus_tag="JBH85_15505"
     CDS             complement(320..889)
                     /locus_tag="JBH85_15505"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HAU0947592.1"
                     /translation="MTIPDKIKAVYEKSTCLYTSNEVEAALDRMAIKIHETLQDKNPV
                     IICVMVGGLVPLGNLLHRLDFPLEVDYVHATRYRGDLTGGDILWKVRPSSNLAGRTVL
                     VVDDILDGGITLAAIINEIKAMGAAEVYSAVLVDKYRKRVPNGLQKADFVGLQVEDHY
                     IFGYGMDYHEYLRNAPGIFIVHPDHEASK"
     gene            complement(932..1258)
                     /locus_tag="JBH85_15510"
     CDS             complement(932..1258)
                     /locus_tag="JBH85_15510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1820 family protein"
                     /protein_id="HAU0947593.1"
                     /translation="MTKKSLFKISFANQDEIYEIYARSIKESDMFGFLEVEELVFGEQ
                     TALVVDPSEEKLKMEFCDVKRIFIPVHSIFRIDEVSKQGTSKVKDNLSHGNKVRPFPG
                     SGKIKD"
BASE COUNT          454 a          271 c          209 g          447 t
ORIGIN      
        1 aaggaaatgg gtatccaaat ttcaattgat gactttggta ctggttattc ttgcttaagc
       61 tacttaaaag acttaccaat tgatatttta aaaattgatc aaacctttgt taaggatcta
      121 aaaaataatc aatccaatca aactctaata aaagctataa ttgcgatggc aaaaaaattt
      181 aacttgagtt tgattgcaga aggaatcgaa aaccaatatc aactcgaatt tttaaaaaaa
      241 ctgggctgtc attatggaca aggatattat ttttctcatc caaagccaac cgaaaaatgc
      301 atgcaatttt tgcaataaat tatttacttg cctcatgatc cggatgaacg ataaaaatcc
      361 ctggcgcatt acgtaagtac tcgtgataat ccataccata gccaaaaata taatgatcct
      421 ctacttgtaa accgacaaaa tcagcctttt gcaaaccatt ggggacacgt ttacgatatt
      481 tatcaactaa tacagcacta taaacttccg cagcccccat ggctttgatt tcattaatta
      541 tggcagccaa ggttatacca ccatcaagaa tgtcatctac gaccaggact gttcgtcctg
      601 caagattgct tgatggtctc actttccaaa gaatgtcccc tcccgttaaa tcacctcgat
      661 aacgcgtagc atgaacataa tccacctcta gaggaaaatc caaacgatgc aatagattac
      721 ctaatggaac tagacctcct accatcacgc aaataattac agggttttta tcctgtagtg
      781 tttcatgaat ttttattgcc attctgtcca gtgctgcttc aacttcgtta gatgtgtata
      841 aacaggttga tttttcatat acagctttaa ttttatcagg aatggtcatt tatttatttc
      901 cttagaagtt gtttatacag gctaaacgaa gttaatcttt tatctttcct gatccaggga
      961 aaggccttac tttattgcca tggctcaagt tatctttgac ttttgatgtc ccttgttttg
     1021 aaacttcatc aatgcgaaat atggaatgta caggaataaa aatgcgctta acatcacaaa
     1081 attccatttt aagtttttct tcagacggat caactaccag tgccgtttgc tctccaaaaa
     1141 ccagctcctc aacctccaga aaaccaaaca tatcgctttc ttttattgaa cgagcataga
     1201 tttcataaat ttcgtcctga ttagcaaaac tgattttgaa tagcgatttt tttgtcatgt
     1261 atctaacctt atctaaaagc aggataaagt atacaaaaag taagggtgta tcttcaaata
     1321 tttaaagcag tttagtcgtc tagagcttat tattagcatc aaatttattc atttagactt
     1381 a
//
LOCUS       DACVWI010000381         1363 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.382, whole genome shotgun sequence.
ACCESSION   DACVWI010000381 DACVWI010000000
VERSION     DACVWI010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.382"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>1363
                     /locus_tag="JBH85_15515"
     CDS             <1..>1363
                     /locus_tag="JBH85_15515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HAU0947594.1"
                     /translation="TYIRKKIVLWDSLCLKKPINGIQYIAIGTIKNQTNKSALNSNLK
                     TNTDGTNPIDITSKFLTEQINNKSKNTSDYVYAIYRYMENIIAQIPVSVYWMNKNHVY
                     MGCSNNMVKLLNLNSRYDIVGKTYEDLYHEKSTSYYKKADKIVMDKGISLSLEEPFYC
                     PDGTTKEIYLSNKVPLRDLEGKIIGMLGVSVDITDRKKMELELSKAKEAAEEANNVKT
                     EFIANMSHDLRTPLSGVVGMAELMKEQVTDPVQVQYAEWIFDCSQQLLSLLDGILDIV
                     SLGNVKEDELKITTFDINECIAELVHLEMPSIKLKQLDLIVNIDKKIPRLIKTDRIKL
                     HRIILNLLGNAIKFTDSGYIAIDVKLLELNNESGLIYFAISDTGIGIPENQQTKIFDR
                     FHRIIPSSIGKYKGHGVGLHIVQSYVNLLGGEIQVNSEPGVGTTFYFELPIQIEKENE
                     VIKG"
BASE COUNT          514 a          203 c          246 g          400 t
ORIGIN      
        1 gacatatatt agaaaaaaaa tagttttatg ggattcatta tgtttaaaaa agcctataaa
       61 tggaattcaa tatattgcta tagggactat taaaaatcaa accaataaat ccgcattgaa
      121 tagcaatctc aaaacaaaca cagatggcac caaccctata gacatcacaa gtaaattttt
      181 aacggaacaa ataaataata aaagtaaaaa tacttcagat tatgtatatg ctatttatcg
      241 ctacatggaa aatattatcg cacagattcc agtaagtgtt tattggatga ataaaaatca
      301 tgtgtacatg gggtgtagca ataatatggt taaattatta aatctcaatt caaggtacga
      361 tattgttggt aaaacttacg aggatctata tcacgaaaaa tcaacctcat actataaaaa
      421 agcagataaa atagttatgg ataaaggtat ctcattaagt ctggaagagc cattctattg
      481 tcccgatgga actactaaag agatttattt gtcgaataaa gtccctcttc gtgacctgga
      541 gggtaaaatt ataggtatgc tcggggtatc agtagatatt actgatagaa aaaaaatgga
      601 gttggaactt agtaaagcta aagaagctgc tgaggaagca aacaatgtaa agactgaatt
      661 catagccaat atgagccatg atctcagaac cccactaagt ggtgttgtgg gtatggctga
      721 acttatgaaa gagcaagtaa cagatcctgt acaagtacaa tatgcggagt ggatttttga
      781 ttgcagccaa caattattga gtttattaga tggcatactt gacatcgtat ccttgggaaa
      841 tgttaaagaa gatgaattaa aaataacaac ctttgacatc aacgaatgta ttgcggaatt
      901 agttcatctt gaaatgccgt ccattaaact gaaacaactt gatttgatcg ttaatattga
      961 taaaaagatt cctcgattaa taaaaaccga ccgtataaaa cttcatcgaa ttattctcaa
     1021 tcttttaggt aatgccatta aatttaccga ttccggttat attgcaattg atgtgaaatt
     1081 acttgagcta aataatgagt caggattaat ttattttgca atatctgata ctggcattgg
     1141 tatccccgaa aatcaacaaa cgaaaatatt tgacagattt catcgtatta tcccgtccag
     1201 cataggaaaa tataaaggcc atggcgttgg tttacatatt gttcaatcct atgtaaacct
     1261 gctaggcgga gaaatacagg taaacagtga accgggagta ggaactacct tttattttga
     1321 actccctatt caaattgaaa aagaaaatga agtgataaag ggt
//
LOCUS       DACVWI010000382         1356 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.383, whole genome shotgun sequence.
ACCESSION   DACVWI010000382 DACVWI010000000
VERSION     DACVWI010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.383"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            11..934
                     /locus_tag="JBH85_15520"
     CDS             11..934
                     /locus_tag="JBH85_15520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947595.1"
                     /translation="MTSNKCDIVLLTQKDFIDPADITPYIQNVLTEDRLLTEALEQKG
                     LKVKRTHWDNRQYNWSETRYALFRATWDYFHRYDEFHLWLNDCSKRIQFINPISIIQW
                     NIDKHYLSDMQQKGINIPPTLFLKRGRLNILNNLMKESGWKKAILKPAIAGGARHTYL
                     FDQDSADHYQDVFESLINNESMLLQEFQENIVNKGEVSFMVFGGRYSHSILKKAKSGD
                     FRVQDDFGGTVHPYEASQEEREFVENVIAQCDELPVYARVDVMWDNNNKLCLSELEMI
                     EPELWFRESSQAASAMADAVCEHISGVSEYK"
     gene            976..>1356
                     /locus_tag="JBH85_15525"
     CDS             976..>1356
                     /locus_tag="JBH85_15525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M4 family peptidase"
                     /protein_id="HAU0947596.1"
                     /translation="MNTRIVSLLAVSMASVNLQAASENIIWQAGDNNLKKYNFSILQD
                     KKGFMSITNKITSLNYQLKPVDHEGNRDYNDIRYQVYYRNIPVWGHELILHKTSKSKI
                     FLTGVDVSEIEKDVHQTDGKLSAAD"
BASE COUNT          460 a          203 c          287 g          406 t
ORIGIN      
        1 tgtttctatc atgacctcta acaagtgcga tattgtccta ctaacacaga aggattttat
       61 agacccggcc gatattactc cctacattca aaatgtgcta acagaagata gattattaac
      121 cgaagctctg gagcaaaagg gattaaaagt taaacgaact cattgggata atcgacaata
      181 taattggtca gagactagat atgcactgtt tcgtgccacc tgggattatt ttcatcgtta
      241 tgacgagttt catctctggc taaatgattg ctcaaaaaga attcaattta taaatccgat
      301 ttctattatt cagtggaata ttgataaaca ttatttgagt gatatgcagc aaaaaggaat
      361 taatatccct cctactttat ttttaaaaag ggggaggcta aatatcttaa ataatttaat
      421 gaaggaatcg ggatggaaga aagcgatact aaaacctgca attgcaggcg gagcacgcca
      481 tacatattta tttgatcagg attccgcgga tcattatcaa gatgtatttg aatcattaat
      541 taacaatgag tcgatgttac tccaggaatt tcaggagaac attgtaaata aaggagaagt
      601 ctcttttatg gtatttgggg gtagatatag ccattctata ctaaaaaaag caaaatctgg
      661 cgattttaga gtacaggatg atttcggtgg gactgtacat ccttatgagg catctcaaga
      721 agaaagggag tttgttgaga atgtcatagc tcaatgcgat gagttacctg tgtatgcacg
      781 tgttgatgtc atgtgggata acaataataa attgtgtttg agtgagttgg aaatgataga
      841 gcctgagctt tggtttaggg aaagcagtca agccgcgtct gctatggctg atgcagtatg
      901 cgaacacata tcaggagtca gtgaatataa ataaacgctg taagacacaa caatagtcaa
      961 agacagggaa aaaatatgaa cacacggata gtttcattat tagctgtttc tatggcaagt
     1021 gttaatttgc aagctgcttc agaaaatatt atttggcagg cgggcgataa caatttaaaa
     1081 aaatacaatt ttagtatctt gcaagataaa aaaggattta tgtcaattac taataaaatc
     1141 acgtcgttaa attatcagct gaaaccagtt gatcatgagg gcaatcgtga ttataacgat
     1201 attcgttacc aggtttatta tagaaatatt cctgtttggg gtcatgagct aatccttcat
     1261 aagaccagca agtcaaaaat ttttctgacc ggtgtcgatg tgtctgaaat tgaaaaggat
     1321 gttcatcaga ctgatgggaa attaagtgct gctgat
//
LOCUS       DACVWI010000383         1354 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.384, whole genome shotgun sequence.
ACCESSION   DACVWI010000383 DACVWI010000000
VERSION     DACVWI010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.384"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            59..235
                     /locus_tag="JBH85_15530"
     CDS             59..235
                     /locus_tag="JBH85_15530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HAU0947597.1"
                     /translation="MQEYKRYICVICGFIYDEAEGWPEDGIEPGTRWEDVPENWFCPD
                     CGAGKEDFEMVEMD"
     gene            complement(232..654)
                     /gene="hemJ"
                     /locus_tag="JBH85_15535"
     CDS             complement(232..654)
                     /gene="hemJ"
                     /locus_tag="JBH85_15535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HAU0947598.1"
                     /translation="MLFVKAFHIIALVAWFAGLFYLPRLYVYHAESLDKISIDRFKIM
                     ERRLYYGITWPAALATTFLGLWLSTYNLSYYLKAGWMHMKLALVLLLWVYHLTCGHFL
                     KSFALGKNTRSSRFYRFFNEMPTLLLVGIVLLVVVKPF"
     gene            complement(657..>1354)
                     /locus_tag="JBH85_15540"
     CDS             complement(657..>1354)
                     /locus_tag="JBH85_15540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAU0947599.1"
                     /translation="LIILEVVLGIDNLVILSILTEKLPREKRKKARRWGLTFAWMTRL
                     LLLGSAVFLVKLVKPILTIGSLVFSARDLFLILGGAFLIWKSTDEIHQDVMNEPLMEP
                     VSKNVSSSATFRGVVIQIALLDIIFSLDSVLTAVGLTSHFIVMAVAITIAIIIMIWAS
                     EPVSKFISEHPTIKMLALSYLILIGTVLVADGFEFHVPRGYLYFAMGFSLAVESLNLI
                     KNERVKRKKLKRE"
BASE COUNT          472 a          250 c          241 g          391 t
ORIGIN      
        1 taactttaca taatcatcaa cagtagataa attagcactt ttttattgag tttagactat
       61 gcaagagtac aaaagataca tttgtgttat ttgtggtttt atttatgatg aggctgaagg
      121 ttggccagaa gatggtattg aaccaggcac acgatgggaa gatgttcctg aaaactggtt
      181 ttgtcctgat tgtggtgcag gaaaagaaga tttcgaaatg gttgaaatgg attaaaatgg
      241 ttttacaacc accaacaaaa caatgcctac cagcagcagt gtaggcattt cattaaaaaa
      301 tcgataaaaa cgagagcttc ttgtattctt tccaagggcg aatgatttaa gaaagtggcc
      361 gcaagttaaa tgatataccc ataagagcaa aaccaatgca agcttcatgt gcatccaccc
      421 tgctttaaga taataagata aattgtaagt ggatagccac aacccaagaa atgtggttgc
      481 aagagctgca ggccatgtaa ttccgtaata taatcttctt tccattattt taaaccgatc
      541 aatgctaatt ttatctagtg attcagcgtg gtatacgtag agccgtggta aataaaacaa
      601 ccctgcgaac caggctacca aggcgataat atgaaaagct ttaacaaata acatacttat
      661 tctcttttta gttttttacg ctttacacgt tcatttttaa tcaagttgag tgattcaact
      721 gctaatgaaa aacccatagc aaaatacaag tatcccctgg gcacatggaa ttcaaaacca
      781 tcagctacca aaacggttcc tattaaaatc aaataactaa gcgccagcat tttaatggta
      841 ggatgttcgc taataaattt acttacaggc tcactcgccc aaatcataat gataattgcg
      901 atggtaattg ctactgccat gactataaaa tgagatgtta gccctacggc tgtgagaacg
      961 ctatctagtg aaaatataat atcaagcaat gcgatttgaa taacaacccc cctgaaagtg
     1021 gcagatgaag aaacattttt tgaaacaggt tccattaatg gctcattcat aacgtcctga
     1081 tgaatttcat cagttgactt ccaaattaaa aaagcaccac ctaatatgag gaacagatca
     1141 cgagcagaaa ataccagact gcctattgtc agaattggtt ttactaactt aactaaaaaa
     1201 actgctgagc ctagtaaaag aagtcgtgtc atccaggcaa atgttaagcc ccatcttctc
     1261 gccttttttc ttttttcacg tggtaatttt tctgtaagaa tcgatagaat aaccagatta
     1321 tctattccaa gaacaacttc aagaataatc aaag
//
LOCUS       DACVWI010000384         1348 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.385, whole genome shotgun sequence.
ACCESSION   DACVWI010000384 DACVWI010000000
VERSION     DACVWI010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1348
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.385"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>1348
                     /gene="ankI"
                     /locus_tag="JBH85_15545"
     CDS             <1..>1348
                     /gene="ankI"
                     /locus_tag="JBH85_15545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dot/Icm T4SS effector AnkI/LegAS4"
                     /protein_id="HAU0947600.1"
                     /translation="LYDFLQESSVMPRSKNDSKLKKKSALQSKFKEQQLNHGSKEHKS
                     KFKFSQRKAKKKGPGMTHLPGNIYTLFTPVNGPKSKDEWIDTSKIMLDLHIDNMSSSD
                     YIPSAIDRTDLVMVQSVHLLRKTGGRGLFAREDIPKGTCIGIYTGEVYSEQEFEQYLK
                     EHVGSDKSYAMYVGGRVIDAARKGNLTRYINFSDSQDNAEFVETTLNRKKVAKVITTK
                     NIKAGQQLLINYNTYEEQASRYYYFLNPGDGWLSAQEFYQTYQSQYRLEQMPYNLEGF
                     DLKAGDRVLMTQIGRIILANYSLAKEQELNASDIDLPFLKVGSDEKILDFDEADTFTP
                     LMAACYLGQVENVKWLIEHGANIDQQQSHSGHCPLSLTLKGYSLAKDTQKYIDIIQLL
                     IKNQVNLLVHDRSDKTFLHNAALVLNNLDFQSVVKFLIGQNPIDINEYFTYIDEND"
BASE COUNT          476 a          215 c          258 g          399 t
ORIGIN      
        1 ttttatatga ttttttacaa gagagcagtg ttatgccaag aagcaagaat gatagcaaac
       61 ttaaaaagaa aagtgccctt cagtcaaagt ttaaagaaca gcaattgaat catggtagta
      121 aagagcacaa atctaaattt aaattttccc aaagaaaggc aaagaaaaaa ggacctggga
      181 tgacacacct cccaggtaat atttacacgc tgtttactcc tgtcaatgga ccgaaaagca
      241 aggatgaatg gattgacacg agcaaaatta tgcttgattt acatattgat aacatgtcaa
      301 gcagcgatta cattccatct gctatagaca gaactgatct tgttatggtt cagtctgtcc
      361 atttactcag aaaaaccggc ggacgaggtt tatttgccag ggaagatatc ccaaagggga
      421 cttgtattgg tatttacaca ggagaagtat attctgaaca agaatttgaa caatatctaa
      481 aggaacatgt tggttctgat aaaagttacg cgatgtatgt tgggggacgg gtaattgatg
      541 cagcaagaaa aggtaatttg actcgttata tcaatttttc ggatagtcag gataatgcag
      601 agtttgttga aactacattg aatcgcaaga aagtagcaaa agttataacc actaaaaaca
      661 tcaaggcagg acaacaacta ttaatcaact ataataccta cgaagagcag gcctccaggt
      721 attattactt tcttaatcct ggcgatggtt ggctatcggc acaagaattt tatcaaactt
      781 atcaatctca gtaccgatta gaacaaatgc cctataattt ggaaggattt gatcttaaag
      841 caggggatag agttttaatg actcaaatag gacggataat tttagctaac tattctcttg
      901 caaaagaaca agaattaaat gcctcagata tcgatttgcc atttttaaaa gtgggttctg
      961 acgaaaaaat attagatttt gatgaagcgg atacattcac ccctttgatg gctgcctgtt
     1021 atcttggaca agttgaaaat gtaaaatggc ttattgaaca tggtgctaat atcgatcaac
     1081 agcaaagtca ttctggtcat tgtcctttga gtttgacatt gaaaggatat tctttagcga
     1141 aggataccca aaaatacatt gatatcattc agctattgat taaaaatcag gttaatcttt
     1201 tagtgcatga ccgatcagac aagacttttt tacataatgc cgcattagta ctgaataacc
     1261 ttgattttca atctgttgta aaatttttaa taggacaaaa tcctattgat atcaatgaat
     1321 actttacata catcgatgag aatgattt
//
LOCUS       DACVWI010000385         1320 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.386, whole genome shotgun sequence.
ACCESSION   DACVWI010000385 DACVWI010000000
VERSION     DACVWI010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.386"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1277)
                     /locus_tag="JBH85_15550"
     CDS             complement(<1..1277)
                     /locus_tag="JBH85_15550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HAU0947601.1"
                     /translation="MMTSYLKGIQGMELTTTENQVFKSSKVSLALVTVLVGIGSGFLG
                     MCLAMLLHYLQHIAYGYSPLHIISNETFLEGVRASSSERRISILFLCGLIAGMGWWAL
                     YRFGKPLVSIAAAIKSGKPMPALSTFIHAFLQIITIALGSPLGREVAPREVSSVFAYW
                     LSSKAGLTPEESKMMLACGAGAGLAAVYNVPLGGAVFVLEVLLCTSNWTVLLPALSSS
                     AIAVLVSWWGLGNESIYQLPEFSLSAPIILWSILASPVLGFFAFWFIQIATIQRSKAM
                     HNWQMILACLINFLIIGLFAIYFPSLLGNGKSPAEMEFDQSVGIGLSIVLFMLRNVFV
                     WSSLRVGAQGGLLTPSLANGALLGAILGGIWNLYLPPAPIHAFALIGATAFLAAAQKM
                     PLTAIILIFEFTRINFIFLIPIMLAVSGSMGMC"
BASE COUNT          445 a          289 c          267 g          319 t
ORIGIN      
        1 tggcacatac ccatagagcc ggaaacagca agcatgatag ggataagaaa gataaaatta
       61 atccgggtga attcgaaaat gaggataatg gcagtcaaag gcattttttg tgccgcagca
      121 agaaaagccg tggcaccaat aagcgcgaag gcatggatgg gagcgggtgg taaatacaaa
      181 ttccaaattc cacctagaat agctcctaat aaggcgccgt tagccagtga gggggttagt
      241 aagccacctt gtgctcctac acgcaagctt gaccatacga atacattcct caacataaat
      301 aatacaatac ttaaaccaat tcctactgat tgatcaaact ccatttctgc cggacttttg
      361 ccgttaccta gtaaagaagg aaaataaatt gcgaataagc caatgattaa aaaattaatt
      421 aaacaagcca atatcatttg ccagttatgc attgctttgc tgcgttgtat tgtagcaatt
      481 tgaataaacc aaaaagcaaa aaaacctaac accgggctgg caagaataga ccaaagaatt
      541 ataggtgcac ttaatgaaaa ttcagggagt tgataaattg attcatttcc caaaccccac
      601 caagacacta gaactgctat agcagaagaa gataatgcag gaagcaagac agtccagttg
      661 gaagtgcata acaacacttc caaaacaaaa acggcaccgc ctaaaggcac attataaacc
      721 gcagcaagcc ccgcgcctgc tccacatgcc aacatcatct tgctttcctc aggagttaat
      781 cccgctttgc tagatagcca gtaagcaaag acagagctta cctcacgagg agccacctct
      841 cgtcccagag gtgagcccaa tgcaattgtt atgatttgta aaaaagcatg aatgaatgta
      901 ctgagagctg gcatgggttt acccgatttt attgccgccg caatactgac taatggttta
      961 ccaaaacgat aaagtgccca ccatcccatg cctgcgatta agccacaaag gaatagtatg
     1021 cttattctcc gctcagatga agaggctcta actccctcca gaaaagtttc attactgatg
     1081 atgtgaaggg ggctgtaacc ataggcaata tgttgaagat aatgcaataa catggccagg
     1141 cacatgccta gaaaacctga accgattccc accagaacag taaccagagc aagacttact
     1201 ttggaacttt taaatacttg gttctcggtt gtggttaact ccattccctg gattccttta
     1261 aggtaacttg tcatcaattt gcttataggg gtaagaattt tattatttct gtatgcagat
//
LOCUS       DACVWI010000386         1287 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.387, whole genome shotgun sequence.
ACCESSION   DACVWI010000386 DACVWI010000000
VERSION     DACVWI010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.387"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..574
                     /gene="lem15"
                     /locus_tag="JBH85_15555"
     CDS             <1..574
                     /gene="lem15"
                     /locus_tag="JBH85_15555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem15"
                     /protein_id="HAU0947602.1"
                     /translation="AFISIPQDVIALDLSNNLLGSKSCVDLLVNIADCIPAGVTSLDL
                     SSNGLRLTQVSLVTPKHVTSLNLCFNPLHEISIDGLEWLKDSLAHIQIIYLSYDMVNN
                     MSREQRQAFRAVIPNIQTIILVDKNGKEIGPSHTAKIANLISELGGGNPEVPSLLNQC
                     TFFVKTQGINIDKAYIPEELKKRIHDCNPL"
     gene            complement(636..950)
                     /locus_tag="JBH85_15560"
     CDS             complement(636..950)
                     /locus_tag="JBH85_15560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947603.1"
                     /translation="MHLKSWLNGARIITISLLKLKNEFICCQSHPGRRAHCPDHFSTI
                     YVYIFVSTNFKHIDWCGLSFCCILYTSSKKKRPNAHPGSVFTLFNPGTFFHFFPFPAR
                     IS"
     gene            complement(895..1086)
                     /locus_tag="JBH85_15565"
     CDS             complement(895..1086)
                     /locus_tag="JBH85_15565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947604.1"
                     /translation="MDLCGFYSYPLNLAFICLPLPYVMSPDKAMIIKASIFLIVEKDC
                     SHALEILVKWSEDYNNLFT"
BASE COUNT          439 a          215 c          239 g          394 t
ORIGIN      
        1 agcttttata tctatccctc aagatgtaat cgcccttgat ttgagtaata atctactggg
       61 ctcaaaaagt tgcgtagatt tattagtaaa tatagcggac tgtatacctg cgggtgtgac
      121 ttcgcttgat ttgagtagca atgggctcag attaacgcaa gtctctttag ttacacccaa
      181 acacgtgact tcacttaatt tgtgttttaa tcccttacat gaaatatcta ttgatggttt
      241 agagtggctt aaggattcgt tagcacatat tcaaattatt tatttaagct atgatatggt
      301 caataacatg tcaagagagc aacggcaggc atttcgagcg gtaattccca acatacaaac
      361 aattattttg gtcgataaaa atggcaaaga aattggtcct tcgcatacag caaaaatcgc
      421 taatctcatt agtgagcttg gaggtggaaa cccagaggtt ccctctttgt taaaccaatg
      481 tacctttttt gttaaaactc aaggaataaa tatagataag gcctatattc ccgaagaatt
      541 aaaaaaacgt attcatgatt gcaatcctct ctgatttatt gttgcgtagt agcaagtgta
      601 ggtcgggcct tggcccgaca acttttgcta attatctaag atattcgagc aggaaagggg
      661 aaaaaatgaa aaaaagtccc aggattaaat aaagtaaaaa ctgatcctgg atgagcattt
      721 ggtctttttt tcttggacga agtatataaa atgcaacaaa aagacaggcc acaccaatca
      781 atatgcttaa aatttgtact aacaaaaata tagacataaa ttgtggagaa gtggtctggg
      841 caatgtgctc ttctaccggg gtgactttgg cagcatatga attcattttt tagcttaagt
      901 aaagagattg ttataatcct cgctccattt aaccaagatt tcaagtgcat gagaacaatc
      961 tttctctacg attagaaaaa tgctcgcttt tatgatcatt gctttgtcag gactcataac
     1021 atagggaagg ggtaggcaaa taaacgccaa attaagtgga taactataaa aaccacaaag
     1081 atccatgagg cagtttcttc aaatactacc ttgatttatt cagataaact cagcaacttt
     1141 gcaataaaag tcgctgagtt tagaaaaatt atcggaaaat ttgcctactg aaaaaaaaac
     1201 aacagttggc atatgaaatt ttgttctaca ccgaggtaaa ttcatttttt tgatagatag
     1261 gttaataaaa tcataattct taaatgc
//
LOCUS       DACVWI010000387         1286 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.388, whole genome shotgun sequence.
ACCESSION   DACVWI010000387 DACVWI010000000
VERSION     DACVWI010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1286
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.388"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..>1286)
                     /locus_tag="JBH85_15570"
     CDS             complement(<1..>1286)
                     /locus_tag="JBH85_15570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3458 domain-containing protein"
                     /protein_id="HAU0947605.1"
                     /translation="NTPFTIEMTSLLGENTDLFGLYETEGVALVKAESEGLRRVFYLP
                     DRPDNLATYKTTIIANQEDYPVLLSNGVLIEKKELPLGLHSVTWLDDVPKPSYLFALV
                     AGNLQRSVTYYQTKSGRELPIEFYVPPSATSKCDFAKEVLKEAMAWDERTFNLECALR
                     QHMVAGVDKYASGASEPTGLNLFNTENLFASPETKTDLGILRVLEVVAHEFFHYWSGD
                     RVTIRDWFNLPLKEGLTTFRAAMFREELFGTDLIRLLDGKNLDERAPRQSAYTAVRSL
                     YTAAAYEKSADIFRMMMLFIGKEPFIEAVAKFFKDNDGGAVTLEDFIESISNSSGKDL
                     RSFLSWFTESGIPELIVTDELNPDTKQYFLKIKTVNGRNRPIPILMGLLDSSGAEIVA
                     DKLLIVDQEEIEFQFENIQTRPIPSLLRSFSAPVHM"
BASE COUNT          401 a          272 c          226 g          387 t
ORIGIN      
        1 ttcatgtgta caggggcaga aaaactacgt aataacgatg gaatagggcg ggtctggata
       61 ttttcaaatt gaaactcgat ttcctcctga tcaacgatta ataatttatc agctacaatt
      121 tctgcccccg aactatcgag caaacccata aggataggaa tggggcgatt tctcccattg
      181 actgttttaa tttttaaaaa atattgcttt gtatctggat tcaattcatc tgttactatc
      241 aattcaggaa ttccagattc agtaaaccag gacaaaaaag aacgaagatc tttaccagaa
      301 gagttgctaa ttgattcaat aaaatcctcc agagtaactg cacctccatc attatcctta
      361 aaaaacttag ctactgcttc aataaagggt tctttaccta taaacaacat catcatacga
      421 aaaatatcag cacttttttc ataggctgca gcagtatata ggcttctaac tgctgtgtag
      481 gcactttgtc gtggtgctct ttcatccaaa ttcttgccat caagtaatct tatcagatca
      541 gtaccaaaca gctcctctct gaacatagca gctctaaacg tagtaagacc ttcctttaat
      601 ggtaaattaa accaatctct tatagtgact cgatctcctg accaataatg aaaaaactca
      661 tgggcaacca cttccaacac gcgtaaaatg cctaaatcgg ttttagtttc agggcttgca
      721 aatagatttt ctgtattaaa taaatttaat ccggttggct cggaagcacc tgacgcatat
      781 ttatcaaccc cggctaccat atgttgtctc aaggcacatt ctaaattaaa agtacgttca
      841 tcccatgcca ttgcttcttt caatacttct tttgcaaaat cacattttga tgtggctgat
      901 ggtggaacat agaattcgat gggtaattca cggccagatt ttgtttgata ataagtgact
      961 gatcgctgta aattgcctgc gaccaaagca aataaataac ttggctttgg gacatcatcc
     1021 agccaggtta cagaatgcag acccaaagga agttcttttt tctcaattag cacaccattt
     1081 gaaagtagaa caggataatc ttcctgattt gcgatgatag tggttttata agtcgcgaga
     1141 ttatcaggtc tgtctggcaa ataaaatact cggcgtaatc cctcagactc tgccttgact
     1201 aaggccacgc cctctgtttc atacaaccca aacaaatcgg tattttcacc gagcagagag
     1261 gtcatttcta tagtaaaggg ggtatt
//
LOCUS       DACVWI010000388         1281 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.389, whole genome shotgun sequence.
ACCESSION   DACVWI010000388 DACVWI010000000
VERSION     DACVWI010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1281
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.389"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(1..1124)
                     /gene="lem6"
                     /locus_tag="JBH85_15575"
                     /pseudo
     CDS             complement(1..1124)
                     /gene="lem6"
                     /locus_tag="JBH85_15575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095153.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Lem6"
BASE COUNT          382 a          225 c          198 g          476 t
ORIGIN      
        1 atatttagtt aaatctagat gttcaaaaac tgcagagcga gcagttggtg ctgcagatag
       61 gaatgatctg ataaatttcg tcggttttga ttctaggtca acatatgaaa tcattgcctt
      121 ttgttcgcta agggataacg cggcaaacag attgggaaaa ccactaatcc tttcatatag
      181 tttaacgcat ttgctaattg ttcttaaatc taataatttg ccattcactt cgctcatttt
      241 tagaatcatc tgataaagtt tatcattgtc aaatattttt tccctaattt ttgatagact
      301 ttgaatagct tttctttaag atcgtgttca taaggtttaa gatcattctt ataaggcttg
      361 gtgctaaata tagagaaacg acattttctt tgttggattt catctaaact ataagtttct
      421 ttcagttggt tattccatgg attgactaag acaaaatcat acccacccgc actttttgga
      481 ttaggaataa ttctatcaag tctcaaagca tgtctgccat gtcttacccc attagaatca
      541 acttctccat actttatact gatataaact ggctcttgag gagctgtagt tttaaatcgt
      601 atgatctcat gaatatcacg ggtatcatga gccataaaac ccaataattg accgacaaat
      661 ttcgttgagg tctcattatg cctttttgat ccctttgatc cattatgagc aacaatactt
      721 gccaatggta gatttggatt ccaatccgat gccaagtaat aagaacttaa gcgttctaaa
      781 atttttatgg ccaaagagtt actttttact ccgtcagtag tttggtcaat ttcttgtatt
      841 ttctttttgt caataaaaaa cacgtcttga ttattgatcg gatcgtaatg atatttgtat
      901 ttaccctgca acttatcttt ttgtaaattt tgactcagat cactagattt aaatcttact
      961 tcaatgccat cttttgtttc tttaaataat gatttgatgg ctgcataacc ttctggcccc
     1021 gaatttagta tacaatccaa agtcgccaaa agataacagt ctcctgtttt accttgacgt
     1081 atagttacga aaccgtcatt tttggggaat agtggtgttg tcatgattta atctcctaaa
     1141 aattctaagt tgaaaattta agttactcgt ataaattttc tcgatttaaa ctctatgaat
     1201 tcttatgcca ttacaggacc gatgaatgtt ctttatttca ataagttaat tgaataatca
     1261 actcactttc ttgcttaaac a
//
LOCUS       DACVWI010000389         1258 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.390, whole genome shotgun sequence.
ACCESSION   DACVWI010000389 DACVWI010000000
VERSION     DACVWI010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1258)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1258)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.390"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            66..422
                     /locus_tag="JBH85_15580"
     CDS             66..422
                     /locus_tag="JBH85_15580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947606.1"
                     /translation="MSKFFTLLICISIGLLSFPTYAQKTIRLSPNETKTLKNSTLWTL
                     NATCNVQSSTKVNGKIKIIVLKNNGKVNGKSLSTGQGTFITIKNNSSISVSAESGTQI
                     NLINLGNQELQAVCST"
     gene            complement(481..1203)
                     /locus_tag="JBH85_15585"
     CDS             complement(481..1203)
                     /locus_tag="JBH85_15585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HAU0947607.1"
                     /translation="MNYQYSPNLKKKFLLALTTLFIVQMFYFATVRASTRDTQLWTLM
                     NAIGPINKQHRKIRYWLEIQDRVGENISQLSQLILRPGIGYELLPTTTIWLGYDRIYT
                     AQPFANPPVNENRVWQQLLWSKEYTRLRLTARSRLEERFIQRATHTAWRYRQLFKTSI
                     FIPKHPKYAAVISDEAFFHLNDFNLQRNQGFDQNRLFVGLGYRTSKNSTIEIGYLNQM
                     IKRVNNPDYRGDYLSMALLLTE"
BASE COUNT          409 a          203 c          238 g          408 t
ORIGIN      
        1 tgtatataat gtatacatat tgcgttaaaa tagttgggct ttagattctg gagaaggaaa
       61 gtagcatgtc taaatttttt actttgttga tatgtatctc aattggttta ttaagcttcc
      121 caacttatgc tcaaaaaacg atacgactta gccctaacga aaccaagacg ctaaaaaata
      181 gcactttatg gactttgaat gcgacctgta acgtacagag cagcacgaag gttaatggta
      241 aaataaaaat cattgtttta aagaacaatg gcaaagtaaa tggtaaaagc ctttcaaccg
      301 gccagggaac ttttattaca ataaaaaata acagcagtat ctcggttagt gcagaatcag
      361 ggactcaaat taatctgatt aacttgggta atcaagaatt gcaagcagtt tgttctactt
      421 aattaaatca atttttctca aacaaactat tgaaagtaat ggtttgtttt gtacgcttgt
      481 ttattctgtt aataatagag ccatggataa ataatctcca cgatagtcag ggttatttac
      541 gcgtttaatc atttgattga gatacccaat ctctatagtg ctgtttttac tggttctata
      601 acctaagcca acaaataaac ggttttgatc aaagccttga ttacgttgaa gattgaagtc
      661 attcagatga aaaaaagctt catcactaat cacggctgcg tatttagggt gtttgggaat
      721 aaaaatactg gttttaaata attgtctata ccgccaggcg gtatgagtag ctctttggat
      781 aaagcgctct tccaaacgcg aacgagcagt aagtcttaag cgagtatatt ccttgctcca
      841 caataattgt tgccaaactc gattttcgtt tacaggaggg ttggcaaatg gttgcgcagt
      901 gtaaattcta tcatatccga gccatatagt tgttgtaggc aagagttcat atcctatgcc
      961 agggcgtaat attagttggg acaattgcga aatattttca ccaactctat cttgtatctc
     1021 aagccaatat cttattttgc gatgttgctt attgattggt cctatcgcat tcataagtgt
     1081 ccataattga gtatcccttg ttgatgctct aacagtggca aaatagaaca tttgtacaat
     1141 aaataaagta gtcaatgcga gcaggaattt tttctttagg ttgggagagt attgataatt
     1201 cattatttaa aaagatttaa aaagttactg cacatcaggt ttgagaaacc atcgtcaa
//
LOCUS       DACVWI010000390         1258 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.391, whole genome shotgun sequence.
ACCESSION   DACVWI010000390 DACVWI010000000
VERSION     DACVWI010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1258)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1258)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.391"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>1258
                     /gene="legK3"
                     /locus_tag="JBH85_15590"
     CDS             <1..>1258
                     /gene="legK3"
                     /locus_tag="JBH85_15590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector LegK3"
                     /protein_id="HAU0947608.1"
                     /translation="FDRNIKEIINELQEKDLLPDTGKIIGGPRNQFDKKGEIKQGYLF
                     SVMNKEPIGKGGFASVYPVTLYRQGETGFAKKSTDHKKFVTKKFNLNKLKIKYTNLNI
                     ENLIEKEFEFCRKAGHLSIKPPVYNNNKCYLTMKRMPGMDLNRIFNKLMANPHYLTEG
                     QRIKITYALLLALKNQVIDKGIIHRDIKPENIHVKVVDPVEVNIFDYGLAKNAGEDDN
                     LFPGSESWAAPEMFIGLKHDSKADIFSMGRVIAFLWGESATNYLSNNPLNKSRNAAKN
                     LNLPAQVKWVEPFLKQMLAERQEDRIEIDSAINQFKQLASINAPKLKLPQSSIKNHSN
                     INNLCFFQNPTKSTNNSDLTQLNIQRDIKKDLQELLENLPGEFSHYRSNIIFKNTIGR
                     FTTIQKMMNELNRIMDENESQDIPKEL"
BASE COUNT          487 a          192 c          223 g          356 t
ORIGIN      
        1 tttgatagaa atataaaaga aataatcaat gaattacaag aaaaggattt acttccggac
       61 actggaaaaa ttatcggcgg accccgaaat caatttgata agaaaggaga gataaaacaa
      121 gggtatcttt tttcagttat gaacaaagaa ccaataggaa aaggtgggtt cgcttctgtt
      181 tatcctgtta cgctgtatcg gcaaggtgaa actggatttg ctaaaaaatc tactgatcat
      241 aagaagtttg taacaaagaa atttaattta aataaactta aaataaaata caccaactta
      301 aatatagaaa atttaattga aaaagagttt gagttttgtc gaaaagcagg gcacttaagt
      361 ataaaaccac ctgtttacaa taataataaa tgttatctaa cgatgaaacg aatgccaggg
      421 atggatttaa atcgtatctt caataaatta atggctaatc ctcattatct tacagagggt
      481 caacgaatta agataaccta tgctttatta ttggctttga aaaatcaggt gattgataaa
      541 ggaattattc atcgagatat aaagcctgag aatattcatg ttaaagtggt tgaccctgtt
      601 gaagtgaata ttttcgatta cggacttgcc aaaaatgcag gcgaagacga taacctattt
      661 cctggaagtg aaagttgggc agcgcctgaa atgtttattg gcttaaagca cgatagtaaa
      721 gctgatattt tttcaatggg aagagtgatt gccttcttat ggggcgaaag tgctacaaac
      781 tatttgagta ataaccccct taataaaagc cgaaatgcag caaaaaacct taatttgccc
      841 gcacaagtta aatgggtaga gccatttttg aaacaaatgt tagcggaaag acaagaggat
      901 agaatagaga ttgattccgc aataaaccaa tttaagcaac ttgcgtccat taacgcgccg
      961 aagcttaaat tacctcaatc ctcaataaag aatcactcaa atattaataa tctctgcttt
     1021 tttcaaaatc caactaaaag cacaaacaat tctgatctta cacaattaaa tattcagcgg
     1081 gatatcaaaa aggatttgca ggaattatta gagaatcttc ctggtgaatt ttctcattat
     1141 cgcagtaata taatttttaa aaacacaata ggccgtttta caacaataca aaaaatgatg
     1201 aatgaactaa atcggatcat ggatgaaaac gaatctcaag atatacccaa ggaattat
//
LOCUS       DACVWI010000391         1251 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.392, whole genome shotgun sequence.
ACCESSION   DACVWI010000391 DACVWI010000000
VERSION     DACVWI010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.392"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..1053)
                     /locus_tag="JBH85_15595"
     CDS             complement(<1..1053)
                     /locus_tag="JBH85_15595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HAU0947609.1"
                     /translation="MQRLKNIFTAIYQYLLKETEDASHQITLFGIVMMINYPLFGVFW
                     KLEHFQLTEEFILRITAALLCACLAFNQFWPRQLLKFLPVFWYIVLLFCLPYFFAYLT
                     LINNGSTLWLMNCVSAIFFLLLVSSVLGALILLISGVGLAFFHFYILSNNQFVYIPGT
                     ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAE
                     LQELIVERLNNPEVQKDLKENLSKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSI
                     KKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMMWNLLKNSLEYIEETHK
                     GEISIWLEQGWEKENFN"
BASE COUNT          434 a          201 c          205 g          411 t
ORIGIN      
        1 attaaaattc tctttctccc atccttgttc tagccagata gagatttcgc ctttatgggt
       61 ttcctcaata tattccagac tattttttag caaattccac atcatatttt taaaacccac
      121 ttcatcaatc catatggaaa aatcattttt atcatttaaa tgaatcaatg atttttgatt
      181 ttctttgaaa gggtattctt ctaaagacgc cttgagcaat tttttgatgg aataaatcga
      241 aaatgtactg gtatctaatt tgtctcgttg aatattattt aattgcatac gaattaattg
      301 attactcatt tctatgccgc gagtaatttt gcttaaattt tccttcaggt ccttttgaac
      361 ttctggatta tttaatcttt cgacaatcaa ttcctgtaat tcggcttgta aataaatact
      421 ggcaagcggc gttcttaaat catgagcgat acttccagcc agcatgcgca tacccgataa
      481 acgtccggca taggtaattt ctctatctcg tgcaaacaag gcaccaatga ttattgctgc
      541 aataaacgta acaattaaac taaaaagtga tatggttcct gggatataga caaactgatt
      601 atttgataaa atataaaaat gaaaaaaagc aagtccaaca cctgatataa gtaatataag
      661 agcccccaat acactggaaa ctaataaaag aaaaaagata gcggatacgc aattcattag
      721 ccaaagagtc gagccattgt ttatgagagt caaataagca aaaaagtaag gcaaacaaaa
      781 gagaagaact atataccaaa aaacaggtag aaattttaat aattgtcttg gccaaaattg
      841 attaaatgcc aaacaggcac agaggagggc tgcagtgatg cgtaaaataa attcttctgt
      901 cagttgaaaa tgctccagtt tccagaaaac tccgaaaaga gggtaattaa tcatcatgac
      961 gatgccaaat aaagtgattt ggtggcttgc atcttcagtt tcttttaata aatattggta
     1021 aattgcagta aatatatttt ttaacctttg catgattcct taattatctg agtaaaaact
     1081 ttgagattgt ttgggtatta atcttattag tcctgaacat tgaatagtta gtgtaggatt
     1141 agaaatactt gtataaatca tgagtatttc aatggtgaac tctgaatgga tgctaccaat
     1201 tagagttatg atttctacgg tttcttggac ttaagttaaa taatattgct c
//
LOCUS       DACVWI010000392         1250 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.393, whole genome shotgun sequence.
ACCESSION   DACVWI010000392 DACVWI010000000
VERSION     DACVWI010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.393"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            62..>1250
                     /locus_tag="JBH85_15600"
     CDS             62..>1250
                     /locus_tag="JBH85_15600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="portal protein"
                     /protein_id="HAU0947610.1"
                     /translation="MARKRMAMRIFVMILLFFFSISPTLGDSTLPAIFDVKNANKQFD
                     QINLQLSVQNLNLNNLNKAVETLGELSAQSDECIADIQKKINGVDVLIKQATSTGNDK
                     GADLVYLNNQKHQLAELQSQCRLFSIRAQEAIEAYKSAILQLRQEKTLARTLPLWQLA
                     SKIINSSDNTKWINHTKEKFLLQDLPVYLWFCIVAGSFFISILILSKLRQSNVIRRYV
                     KLKKIRWSHITLLALFMMTGSFYGYISLFTAEEQLINSQFLLIKELFWFLCGTLFIVC
                     LFKVKKIKAFFDWYAMDSEFFEILSIVIVAFYFLALSEQRLFDIWEVNKIIVELTRSI
                     FLFLLLGTTAYFTHYFCRSHLHISFVKRHYNFIRYFIFALLSGCAILNINGFYTLAMQ
                     LTLS"
BASE COUNT          377 a          199 c          210 g          464 t
ORIGIN      
        1 atattttaaa tttccttctt gagattcaat ccataagcaa gtagagttta tagtttgtta
       61 attggcaagg aagagaatgg ccatgagaat ttttgtcatg attttgcttt tcttttttag
      121 tatttccccg accttggggg atagcacttt gcctgcaatt tttgatgtca aaaatgcaaa
      181 taaacaattt gatcaaatca atctccagtt gtcagtacaa aatcttaatt taaataacct
      241 gaataaggca gtagaaactc tcggtgaact gtccgcgcaa tccgatgaat gtatagctga
      301 tatacagaaa aaaataaatg gagtggatgt attaatcaaa caagctacct ctacagggaa
      361 tgataaagga gctgatttag tctatctgaa taatcaaaag catcagttag ctgagttaca
      421 atctcaatgt cgattattct caattcgagc tcaggaagca atagaagctt ataaaagtgc
      481 tattttgcaa ttaaggcaag aaaagacttt ggcgcgtacc ttaccattat ggcaattagc
      541 aagtaaaatt attaattcat ctgataatac caaatggata aatcatacta aagagaaatt
      601 tttacttcag gatttgcctg tatatctatg gttttgtatt gttgcaggaa gcttttttat
      661 ctctatcctg atcttgtcaa aattacggca atccaatgtt atacgccgtt atgtgaaatt
      721 aaaaaaaatt cgctggtctc atattacact tttggctttg tttatgatga cgggttcatt
      781 ttatggctac atttccctat ttactgctga agagcagcta atcaattctc aattcctttt
      841 aataaaggag cttttttggt ttctttgcgg cacattattc attgtttgtt tattcaaagt
      901 caaaaaaatc aaagcttttt ttgattggta tgctatggat agtgaatttt ttgaaatact
      961 aagcattgtg attgttgcat tttatttcct cgcattatca gaacagagat tatttgatat
     1021 ttgggaagtc aataagatta ttgtggagtt aactcgctcc atctttcttt ttttattgct
     1081 tggtacaacc gcttatttta ctcactattt ctgccgttct catctgcata tttcttttgt
     1141 aaaaagacat tataatttta ttcggtactt tatttttgca ctgctttcag ggtgcgcaat
     1201 tcttaatatt aatggctttt atactttagc catgcagctt actctatctg
//
LOCUS       DACVWI010000393         1249 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.394, whole genome shotgun sequence.
ACCESSION   DACVWI010000393 DACVWI010000000
VERSION     DACVWI010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.394"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            27..>1249
                     /gene="sidG"
                     /locus_tag="JBH85_15605"
     CDS             27..>1249
                     /gene="sidG"
                     /locus_tag="JBH85_15605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015444540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector SidG"
                     /protein_id="HAU0947611.1"
                     /translation="MSRSKDEVLEANDSLFGITVQTWGTNDRPSNGMMNFADQQFFGG
                     DVGHASINMKLPVTDKTKQWIEKYCYSQTYDQFKKVKGNEDKTYEEYLKTAKRLIPVE
                     LKTQVTRKAQYDSNGNLVTTHEKAYEQIYFDIDWSWWPGRLQNTEDDMVWEREGKHFE
                     YDEKWKEYLQPEQRVHRGKLGSRKMDYAPTSIIHQRDIPTSELEKITRDHKIHTIEEK
                     LNVVKLLQSKIDEMPHTKMSPSMELMFKNLGINVEKLLDETKDNGVDPTNLEAMREYL
                     TNRLTERKLELETELSEAKKEVDSTQVKNKVEDVYYDFEYKLNQVRKKMEEVNSQLEK
                     MDSLLHKLEGNTSGPIPYTAEIDELMSVLPFLKEELELENGTLSPKSIENLIDHIDEL
                     KNELASKQEKKNERNL"
BASE COUNT          499 a          184 c          251 g          315 t
ORIGIN      
        1 tgtttttacc caaaggagga cagaagatgt cccgttcgaa agatgaagtt ttagaagcaa
       61 atgattctct ctttggtatt acagtccaaa catggggaac taatgatcga ccgagtaatg
      121 gaatgatgaa ttttgctgat cagcaatttt ttggtgggga tgtaggtcat gcttccatta
      181 atatgaaatt acctgtgact gataagacaa agcaatggat agaaaaatat tgttattcac
      241 aaacatatga tcaatttaag aaagtaaagg gtaatgaaga taaaacctat gaagagtatc
      301 tgaagaccgc aaaacgactt atacctgtag agttaaaaac gcaagttacg cggaaagccc
      361 aatatgattc aaatgggaac cttgtaacta cccacgagaa ggcttatgaa caaatttatt
      421 ttgacataga ttggagttgg tggccgggaa gattacagaa tacagaagat gacatggttt
      481 gggaaagaga gggaaagcat tttgaatacg acgaaaaatg gaaagaatat ctacagcctg
      541 aacaaagggt gcataggggt aaattaggct ccagaaaaat ggactatgct cctacgtcaa
      601 ttatacatca aagggatatc cctaccagtg aactagaaaa gattacacgt gatcataaaa
      661 ttcatacaat tgaagaaaaa ctaaatgtag taaaactgtt acaaagcaaa attgatgaaa
      721 tgcctcatac aaaaatgagc ccttcaatgg agctaatgtt taaaaactta ggcattaatg
      781 tcgaaaaatt gcttgatgaa accaaagaca atggagtaga tccaacaaac ttagaagcaa
      841 tgcgagaata tttaacaaac cgcctgacag aacggaaatt ggaattagaa actgaactct
      901 ctgaagctaa aaaagaggta gactcaacac aagttaaaaa taaagtcgaa gatgtttatt
      961 acgattttga atacaagtta aatcaagtac gtaaaaaaat ggaagaagta aactctcaac
     1021 ttgaaaaaat ggatagttta cttcataagc tggagggtaa tacatctgga cccattcctt
     1081 atacagctga aattgacgaa ctgatgtctg tcttaccttt tttaaaagaa gaattagaac
     1141 tggaaaatgg tacattgtca cccaagtcca ttgaaaattt gatcgatcat attgatgaat
     1201 taaaaaatga gcttgctagc aaacaagaga aaaaaaatga gagaaatct
//
LOCUS       DACVWI010000394         1240 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.395, whole genome shotgun sequence.
ACCESSION   DACVWI010000394 DACVWI010000000
VERSION     DACVWI010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.395"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(124..894)
                     /gene="ceg19"
                     /locus_tag="JBH85_15610"
     CDS             complement(124..894)
                     /gene="ceg19"
                     /locus_tag="JBH85_15610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg19"
                     /protein_id="HAU0947612.1"
                     /translation="MFKEIITKLGIVMSKLRALEKEANELALILDQALLSQSIEVKRR
                     ALSQFENSELIQNKDNLRVFIDPEHPIVSLIILATKTLPEKIENLQKKVRLLEIQLAA
                     ETEETLDESNSDSESVDYDNGIDVETVVPVSVTHQEHVSEPDTRSVAIARLREVLKPY
                     IDSTQERTYEHYYGMAGTLFSFFGAAGYSKTDKLNAITKLFQNLEGDGAEPLNDTDRD
                     ILTTGVLGTTMKPLLEDEHIGNELKDLLSIKTDNVNII"
BASE COUNT          359 a          233 c          209 g          439 t
ORIGIN      
        1 gttataagat tttcatatat caggaatttt gcctaagatg ccggatcatt gatccggcat
       61 cggatggctt gatgagataa gtgtttcaga tgaacaggaa aactcctgtt caaatatgag
      121 tttttaaatt atattcacat tatcggtttt tatcgatagc aagtctttca attcattacc
      181 aatatgctca tcttctaaca acggcttcat ggtagttcca agaacccctg tagtcagtat
      241 atctctatcc gtatcattga gtggctcagc gccatccccc tcaagatttt ggaacaattt
      301 cgtgatagcg tttagtttat ccgttttact gtaacctgcc gctccaaaaa aactgaacag
      361 tgttcctgcc attccataat agtgttcata tgtcctttct tgagtagaat cgatataagg
      421 tttcaacact tctcttagtc gtgcaatcgc cacagacctg gtgtcaggct cactgacatg
      481 ctcttgatga gtaacgctga caggaacaac agtctctaca tcaataccgt tatcgtaatc
      541 aacgctttca gaatccgaat tcgattcatc aagggtttcc tcagtttcag cagccaattg
      601 gatctcgagc aaacgtacct ttttttgcag attttctatt ttttcaggta aagtctttgt
      661 agcaagtatg attaagctta caatgggatg ctcagggtca ataaaaaccc gcaaattatc
      721 tttgttttgt attaattctg aattttcaaa ttgagataat gctcttcttt taacctctat
      781 tgactgactc aacagggcct gatcaagaat gagagccaat tcattcgctt ctttttccaa
      841 tgctcttagt ttagacataa ctattcccaa tttagtgata atttctttaa acagtgatta
      901 attataaaac aaaaacatta agataatctt aacttatgaa aaatgggcta tttttccgat
      961 tcgtaaattt tccttcggaa tggtacttgt tagagctttt gtaaaatagt tttacgggag
     1021 tgttctcaag ttctattggt ttgacttttg tcttcctgtg gttgatgcca ttcataacca
     1081 aataagtcag attattatgg ggttctgcct ttttgaatta aacagagttc atgatttatc
     1141 tattggtact gaaaattccg ataacatcta caaggataaa tttatgtatt atttttgagc
     1201 acaagcaacc ttaaatagag ttatattaca catcatttgt
//
LOCUS       DACVWI010000395         1227 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.396, whole genome shotgun sequence.
ACCESSION   DACVWI010000395 DACVWI010000000
VERSION     DACVWI010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.396"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..1172
                     /locus_tag="JBH85_15615"
     CDS             <1..1172
                     /locus_tag="JBH85_15615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M4 family metallopeptidase"
                     /protein_id="HAU0947613.1"
                     /translation="DPLHFVSAPNYIIDANSGEILKSWDDLTHKKVGQGLGGNVFILP
                     YRSGLFQHGDSMKDIPSLGKFEVTIKGKNCVVESPEVRVINAAYTDLDKRSFPVLSIV
                     EIYKNIPAFSYPCSKESQYININDGDTSPANYSFSSINDAMYFAGVTLEMYKEYYGVE
                     KPLGDDLPLRAYTHIKNFDNAFAVPSIKIKGLYLMHQQIVIGDGDTQLTAPAQSTLSH
                     ELSHNFTRLHSNLVYNGQSGGINEAFSDMASIAMQDYLRKDFPWYWDGEDWSIGREAT
                     ISGEPIRYMDYPTKDGHSIEHFDDYHDDLDVHLTSGIFNRAFYLLAHQPNWSVRKAFQ
                     VMVDANIKYWTSGTSFEAASCGVIQAAIDRQYNKQDVINAFKEVGVICPVIGLIN"
BASE COUNT          369 a          211 c          266 g          381 t
ORIGIN      
        1 atgatccatt acattttgtc tccgctccga attatattat cgatgccaat tctggtgaga
       61 ttttaaaaag ctgggatgat ttaacacata agaaagttgg tcagggctta ggtggtaatg
      121 tattcattct tccctatcgg tcgggattgt ttcaacatgg ggattcgatg aaggatattc
      181 cttctctcgg caaatttgag gtaacgatca aggggaaaaa ttgtgttgta gaaagccctg
      241 aggtaagggt cattaatgct gcgtatactg atttggacaa gagatccttc cccgttctaa
      301 gcattgtgga aatctataaa aatataccag cattttccta cccctgtagc aaagaatcac
      361 aatatatcaa tattaatgat ggagatacat cacctgcaaa ctacagtttt tcttcaatta
      421 atgatgctat gtattttgcc ggagtcacac tggaaatgta caaagagtat tatggcgttg
      481 aaaaaccttt aggtgacgac ttgcctttgc gagcctatac ccatattaaa aattttgata
      541 atgcctttgc tgtgccttct attaaaataa aaggattgta cttaatgcat caacaaattg
      601 tgattggtga tggcgatact caattaacag caccggcaca gagcacttta tcgcatgagt
      661 tgtctcataa ttttaccaga ttgcattcta acctggtcta taatgggcaa tccggaggaa
      721 tcaatgaagc attctcggat atggcatcga ttgctatgca ggattacttg cgtaaagatt
      781 ttccatggta ttgggatggt gaagattggt ctatagggcg tgaggctact ataagtggtg
      841 agccaattcg ctacatggac tatccaacga aagatggtca ttctattgag catttcgatg
      901 attatcatga tgacttggat gttcatctga ccagcgggat ctttaacagg gctttttatc
      961 ttttagccca tcaaccgaac tggtcagtga gaaaggcatt tcaagtgatg gtagatgcca
     1021 atataaaata ttggacatca gggacttcat ttgaagcagc ttcttgtggt gttatccaag
     1081 cggcaattga caggcaatat aataagcagg atgtcatcaa tgcttttaaa gaggtaggag
     1141 tgatttgtcc tgttataggt ctcataaatt aaatacagca attcaggtga cttcgatact
     1201 gattgctgat aaaaagagat aatcata
//
LOCUS       DACVWI010000396         1213 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.397, whole genome shotgun sequence.
ACCESSION   DACVWI010000396 DACVWI010000000
VERSION     DACVWI010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.397"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            191..>1213
                     /locus_tag="JBH85_15620"
     CDS             191..>1213
                     /locus_tag="JBH85_15620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HAU0947614.1"
                     /translation="MALATEEYRLQGIGQLLVLEKLLDKTKAIELHKLAAAEKMSLLQ
                     YIVKNKILSAEQIALTAAQNFGVPMLDINCIDVGTIPANLVNEKLIKRHAMVPLFSRG
                     TNLYLATDDPSKQASLKEIQFHTGLNTHAIVVETDKLSALIDNLLTAKESQGLSEYVE
                     DSGDLEGLEISADDEDQDIDTATSVTDDAPIVKFVNKILLDAIRQGASDIHFEPYERE
                     YRIRYRQDGILHEVATPPASLSSRITARIKVMSNLDISERRIPQDGGFKMKISKSRAI
                     DFRVSTCPTSAGEKVVMRVLDSGTAKLGIEALGFNPVQRTNFLKAIQRPQGMILVTGP
                     TGSGKTV"
BASE COUNT          405 a          215 c          248 g          345 t
ORIGIN      
        1 atctttcaaa ttttttatta tttccaagag agttgcgtta tagcccgtgt ttgcaaaaaa
       61 ttgatatggc aaagtaacca gaaataggat ttaggggcag gtccaaaaca ccgggttttg
      121 ttcaaaaaac catgcaatta caaaaaaatt taactatatt taaaactaag atacactttg
      181 aataaatgaa atggctctag ctacagaaga atatagatta cagggaatcg gccagcttct
      241 cgtgctggaa aagctgctag ataaaacaaa agcaattgaa ctacacaagt tggcagcagc
      301 agaaaagatg tctttgctgc aatacattgt aaaaaataaa atattatctg ctgaacaaat
      361 tgcactgacg gctgctcaaa attttggtgt acccatgttg gatattaatt gcatcgatgt
      421 gggcaccatt cctgccaatc tggttaatga gaaattaatt aaacgtcacg ccatggttcc
      481 tctttttagt cgaggcacta atttatatct tgcaacagat gatcctagta aacaagcttc
      541 attaaaggaa attcaatttc ataccggatt aaatactcat gcgatagttg tagaaacaga
      601 taaacttagt gctctgattg ataacctatt aacagcaaag gaaagtcagg gcttatcaga
      661 gtatgttgaa gactctggag atctggaagg tttagaaata agtgctgatg atgaagatca
      721 agatattgat actgcaacat cagtaactga tgatgcccct atcgtgaaat tcgtcaataa
      781 aattttattg gatgcaataa ggcaaggagc ttctgatata cactttgagc cttatgaacg
      841 agaataccgc atcaggtaca ggcaagatgg tattttacat gaggttgcta cccctcccgc
      901 aagcttgtca tctcgtatta cagcacgtat caaggtaatg tctaatttgg atatatcaga
      961 acggcgtatc ccccaggatg gtggcttcaa aatgaaaatt tccaagtcac gagcaattga
     1021 tttcagagtg agtacatgtc caacctcggc tggggaaaaa gtggttatgc gggttcttga
     1081 ttctggtact gctaaattag gtattgaagc attaggattt aatcctgttc agcgaacaaa
     1141 tttccttaaa gcaatccagc gcccacaagg gatgatttta gtcactggcc ctactggtag
     1201 tggtaaaaca gtc
//
LOCUS       DACVWI010000397         1210 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.398, whole genome shotgun sequence.
ACCESSION   DACVWI010000397 DACVWI010000000
VERSION     DACVWI010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.398"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            111..977
                     /locus_tag="JBH85_15625"
     CDS             111..977
                     /locus_tag="JBH85_15625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947615.1"
                     /translation="MFSLKKTAVAVLALGSGAVFAGTMGPVCTPGNVTVPCERTAWDI
                     GITALYLQPIYDADWGYNGFTQVGGWRHWHDVDHEWDWGFKLEGSYHFNTGNDINVNW
                     YHFDNDSDHWFDFANWHNYNNKWDAVNAELGQFVDFSANKKMRFHGGVQYARIEADVN
                     RYFNNFAFNGFNSKFNGFGPRTGLDMNYVFGNGFGIYAKGAAAILVGTSDFYDGIGFV
                     TGSKNAIVPELEAKLGADYTYAMAQGDLTLDVGYMWFNYFNAMHNTATNGLETDFAAS
                     GPYIGLKYVGNV"
     gene            1143..>1210
                     /locus_tag="JBH85_15630"
     CDS             1143..>1210
                     /locus_tag="JBH85_15630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003633746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947616.1"
                     /translation="MLNLKKTAVAVLALGSSAVFAGT"
BASE COUNT          342 a          214 c          286 g          368 t
ORIGIN      
        1 tcatatcgtt gcatgcttcg aacctaagcg acgatgcgtg ctattgacaa ctccaaatgg
       61 tgagttatca ataaaatgga aactcaataa taaacaagtg gagacaaggc atgtttagtt
      121 tgaaaaaaac agcagtggca gtactcgcct taggaagcgg tgcagtgttt gctggaacca
      181 tgggaccagt ttgcacccca ggtaatgtaa ctgttccttg cgaaagaact gcatgggata
      241 ttggtatcac cgcactatat ttgcaaccaa tctatgatgc tgattggggc tacaatggtt
      301 tcacccaagt tggtggctgg cggcattggc atgatgttga ccatgagtgg gattggggct
      361 tcaaattaga aggttcttat cacttcaata ctggtaatga catcaatgtg aactggtatc
      421 attttgataa cgacagtgat cactggtttg attttgctaa ctggcacaac tacaacaaca
      481 agtgggatgc agttaatgct gaactaggtc aattcgtaga tttcagcgct aacaagaaaa
      541 tgcgtttcca tggcggtgtt caatatgctc gcattgaagc tgatgtgaac cgttatttca
      601 ataactttgc gtttaacgga ttcaactcca agttcaacgg ctttggtcct cgcactggtt
      661 tagacatgaa ctatgtattt ggcaatggct ttggtattta tgctaaagga gctgctgcta
      721 ttctggttgg taccagcgat ttctatgatg gaataggttt cgttactggt tctaaaaatg
      781 ccatcgttcc tgagttggaa gctaagcttg gcgctgacta cacttacgca atggctcaag
      841 gcgatttgac tttagacgtt ggttacatgt ggtttaacta cttcaacgct atgcacaata
      901 ctgctactaa tggtcttgaa actgatttcg cagcttctgg tccttacatt ggcttgaagt
      961 atgttggtaa tgtgtaattt gttaagttga taagaaattt cagcaatact gttgacttta
     1021 tagaagtccg gctggataat ttatccaggt acgctctcga ttagagcgaa gaatgcgtac
     1081 tgttgctgat atgctaaatt agtaacgaac ggaaattaat aataaaaaaa gtggagataa
     1141 gcatgttaaa tttgaaaaaa acagcggtag ctgttcttgc tttaggaagc agtgcagtgt
     1201 tcgctggtac
//
LOCUS       DACVWI010000398         1188 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.399, whole genome shotgun sequence.
ACCESSION   DACVWI010000398 DACVWI010000000
VERSION     DACVWI010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.399"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(76..582)
                     /gene="cegC3"
                     /locus_tag="JBH85_15635"
     CDS             complement(76..582)
                     /gene="cegC3"
                     /locus_tag="JBH85_15635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector CegC3"
                     /protein_id="HAU0947617.1"
                     /translation="MDLIFSLGVMIMPLTPPASPKTERRSEEDNQQTNQQGNEQGNQQ
                     PRSSILTLFGFTPNALVMPCPHGHGHFHIMDIQADDTLVFATMNGSPEIMSLLALQFL
                     MQNVNLNLDDMLAAETDAKEAEEKEEQELSSSESVNEEKEEAEFSSSESENEEKEEEN
                     EESSRFTM"
     gene            841..>1188
                     /locus_tag="JBH85_15640"
     CDS             841..>1188
                     /locus_tag="JBH85_15640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947618.1"
                     /translation="MADSRSSIQSILEVDKRFDEKYYNYLVDDNYLIPAEAAVIANGL
                     AIFKEEFESGNLFKQRKDNHDSFTHEQILQYYLELALTCGRLEIIKYLIDELHVSLSE
                     EKLLHFLFLHSPYE"
BASE COUNT          371 a          200 c          207 g          410 t
ORIGIN      
        1 agacagagga attaaaaaaa tcccgtattt acctcaggta aatacggggt gtcccttcaa
       61 aagagggcag gcatattaca ttgtaaaacg gcttgattct tcgttttctt cttctttttc
      121 ttcattttct gattcagaag atgaaaattc tgcttcttct ttttcttcat tcactgattc
      181 agacgatgac agttcctgtt cttctttttc ttctgcttct ttcgcatctg tttctgctgc
      241 cagcatatca tcaagattta agttgacatt ttgcatcagg aattgaagcg ccaatagact
      301 cattatttcc ggactgccat tcatagtagc aaatactaat gtatcatctg cctgaatatc
      361 cataatatgg aagtgaccgt ggccatgagg gcatggcatg actagagcat taggagtaaa
      421 accaaaaaga gtcaatatac tgcttcttgg ttgttgattt ccttgctcgt ttccttgttg
      481 attagtttgt tgattatctt cttcagaacg tctttcagtt tttggtgaag cggggggggt
      541 taaaggcata atcattactc ctaaactaaa aattaaatcc aaaaaatact gcccaaaaaa
      601 gataatctca ttaacaatct atcttttcgg cgtcaagttt acaattaatt tacagagctt
      661 ggtagagtaa ttaaacaaat ttttcttatt gaataaaaaa acaaaattat ttttacaggg
      721 agtggaatat ttttaaaaat tgcttcaaat gatcgcatag tcgcatgaaa aaaaccaaaa
      781 atctctgact ggttattttt tgattatact taaagataac catcaagagg agataaaatt
      841 ttggctgatt ccagatcatc gattcaaagt attttggaag tcgataaacg atttgatgaa
      901 aaatattata attatttggt tgatgataat tatttaattc cagctgaggc tgcagtcata
      961 gccaatggat tagcaatatt caaagaagag tttgagagtg gaaacttatt taaacagaga
     1021 aaagacaatc atgactcttt cactcatgaa caaatccttc agtattattt ggagttggct
     1081 cttacttgtg ggcgccttga gatcattaaa taccttatcg atgagcttca tgtttcttta
     1141 tccgaggaaa aactgttgca ctttctattt ttgcacagtc cttatgaa
//
LOCUS       DACVWI010000399         1180 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.400, whole genome shotgun sequence.
ACCESSION   DACVWI010000399 DACVWI010000000
VERSION     DACVWI010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.400"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            27..860
                     /locus_tag="JBH85_15645"
     CDS             27..860
                     /locus_tag="JBH85_15645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4349 domain-containing protein"
                     /protein_id="HAU0947619.1"
                     /translation="MLINRAGQTLYGGAPAMGNAYPTVEKVNAVPGGSGDSNNNPSAS
                     EQVMKGMIIRNANITLEVNDPTKVIDEIMQMAEREGGYVVNSNLRQDSFYVGGNIAQI
                     SIRIPSNRLNNVLQNLKSLAVKVIEESITSEDITRQYVDLESELKNYRVAKDQLNKIM
                     QGAKNTSDVLAVYQQLSETQRKIDVIEGQIKYYKESIAYSLVTIYLQIDPAIKNTQNS
                     TWQISEVVMKSYQALIDNLRQFTYGVIEFVILFVPMILLWGIIALFVFWIGRVIYSRF
                     K"
     gene            complement(949..1146)
                     /locus_tag="JBH85_15650"
     CDS             complement(949..1146)
                     /locus_tag="JBH85_15650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947620.1"
                     /translation="MLKTLGGATRTAALDTARATATTTVVLGTMYLWDRVAKNYGLYD
                     KENSKPINLDLTNDEYMRPKV"
BASE COUNT          374 a          196 c          244 g          366 t
ORIGIN      
        1 acgctgtcct tctatttgcg tacaacatgc tgataaatcg agccggacaa acattatatg
       61 ggggcgctcc agcaatgggg aatgcctatc ccactgttga aaaagtcaat gcggtaccag
      121 gtggttctgg tgatagcaac aataatcctt ctgcttcaga gcaagtcatg aaaggaatga
      181 taattcgtaa tgcgaatatc actctggaag tcaatgatcc gactaaagtt attgatgaaa
      241 ttatgcagat ggctgagcga gagggaggat atgtagtaaa ctctaactta agacaggata
      301 gtttctatgt tggtgggaat atcgctcaaa tcagcattag aataccaagt aatcgtttaa
      361 acaatgtatt gcaaaattta aaatctttgg ctgttaaagt aattgaggaa tcgatcacga
      421 gtgaggacat tacccggcaa tacgttgatc ttgaaagtga gctgaaaaat tacagggttg
      481 ctaaagatca attaaataaa attatgcaag gtgcaaaaaa tacttctgat gtacttgctg
      541 tctatcaaca actgagtgaa acgcagagaa aaattgatgt gatagaaggg cagattaagt
      601 attacaagga atctatcgca tattcactag ttacaattta cctgcagatt gatcctgcga
      661 taaaaaatac acaaaattcc acatggcaaa tatctgaagt tgtgatgaaa tcttaccagg
      721 ctttaataga taatttacgg cagtttactt atggagtcat cgaatttgtt atcttgtttg
      781 tcccaatgat cttactgtgg ggaattattg ctttattcgt attttggata ggtagggtaa
      841 tttattctcg ttttaaataa tagaatttgc agcgtatttc agattttgat ttaagtgaga
      901 gctaaatact cccaacagga tagttgggag caaaaataat cttttagttt aaactttagg
      961 gcgcatatat tcgtcattag tcagatcaag gtttattggc ttggaatttt ccttgtcata
     1021 tagtccataa tttttagcta ctctgtccca gaggtacata gtgcctagaa caaccgttgt
     1081 tgttgctgtt gctctcgcag tatcaagagc cgctgtcctg gttgctccgc ctaaggtctt
     1141 taacatacat ttcccaaaga atgataacat atttaccgtc
//
LOCUS       DACVWI010000400         1166 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.401, whole genome shotgun sequence.
ACCESSION   DACVWI010000400 DACVWI010000000
VERSION     DACVWI010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.401"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>1166
                     /locus_tag="JBH85_15655"
     CDS             <1..>1166
                     /locus_tag="JBH85_15655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin"
                     /protein_id="HAU0947621.1"
                     /translation="KTRFAKFQNFLEENIYSCPENITFQTLARIKEICPECELGEKLF
                     ITGTNLSTQKHEVFSIDTTPSMALADAIIISANLPIAFERICYQGNVYSDGGISNNLP
                     AHCFSEKGHKTTFLKHKDDVDFSVLALQFDNGLEENALYSQNPIPKWSWLSNTFYSLI
                     TGHPNVTENWHEDLQILRRHAHQSILIKTPTIALTNLTISQDTKKALVESGRTAAKTY
                     LELHEFYTDDYGNIRHNECLHEKFQKPEELLDYCVLHSHFALLKKIKQAISCSQYLEK
                     GYKHYLCELCDNLLPPQLKCPNEGSGTEQPEIKLEKDTIICKKNNNSGLTFSMTFFGV
                     PSPLGKTLNQDSPELKIKLFTGLYPILIQNWQNLCPVSGISGILNSIRMSFVEI"
BASE COUNT          420 a          221 c          193 g          332 t
ORIGIN      
        1 aaaacacgat ttgcaaaatt tcaaaatttt ttagaagaaa atatatacag ctgccccgag
       61 aatataacat ttcaaacctt agccagaata aaagaaatat gtcctgaatg tgaattagga
      121 gaaaaactat ttattactgg aacaaatttg agtacccaaa aacatgaagt gttttctatt
      181 gatacaacac catctatggc acttgccgat gccattatta tttccgcaaa tttacctatt
      241 gcctttgagc gtatctgcta tcaaggaaac gtatacagcg atggaggaat cagcaataat
      301 ttacctgccc attgtttttc agaaaaaggg cataaaacaa cctttttgaa acacaaagat
      361 gatgttgact tcagtgtact tgctctgcag tttgataatg ggcttgaaga gaacgctctt
      421 tatagccaga acccaatacc taaatggtca tggctaagca acacattcta ctcattgatt
      481 acaggacatc caaatgttac tgaaaactgg catgaggatc ttcaaatact gaggcgacat
      541 gcccatcaaa gtattttaat taaaacgcca actattgctt tgaccaatct cacaattagt
      601 caagatacaa aaaaagccct ggtcgaatca ggacgaacag ctgccaagac ctatctggaa
      661 ctccatgagt tttatacgga tgattatgga aatatcagac ataatgaatg cttgcatgaa
      721 aaatttcaaa aacccgaaga gttattggat tattgtgtcc tacacagcca ctttgcactt
      781 ttaaaaaaaa taaagcaagc catttcctgc tcacaatatt tagaaaaagg gtataaacat
      841 tatttatgtg agttgtgtga caacttgctt ccacctcaac tgaaatgccc caacgaaggt
      901 tcaggaacag aacaacctga aatcaagtta gaaaaagata ccatcatttg caaaaagaat
      961 aataatagtg ggctgacatt ttcaatgaca ttttttgggg ttccatcccc tttaggcaaa
     1021 acattaaatc aggatagccc agaattaaaa attaagctat ttacaggttt atatcctata
     1081 ctaattcaaa actggcaaaa tttatgccct gtttcaggca ttagtggtat attaaattct
     1141 atccgcatgt cattcgttga aatcag
//
LOCUS       DACVWI010000401         1158 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.402, whole genome shotgun sequence.
ACCESSION   DACVWI010000401 DACVWI010000000
VERSION     DACVWI010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.402"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            30..989
                     /locus_tag="JBH85_15660"
     CDS             30..989
                     /locus_tag="JBH85_15660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine protein phosphatase"
                     /protein_id="HAU0947622.1"
                     /translation="MSFKGFKVVMLILLSTQSYASKLASSIVCDSTIENPCIVQDSKT
                     QFSPVIRYREVASIADVYGGNITGINKFHLSGSEQPSEKGWEAIAESISRKMGAETKK
                     VIVLDLRQESHGYLNGRAITLVSAYNWINLGKSNSQSTLDQENWLAGLRSRKIVNGVL
                     TVPQYVAKQYSQGKSMVVSTVKNEEYYVYKKGFDYYRIFISDHRAPLDSEVDALVALI
                     KNNPEDTWYHVHCRGGKGRTTTVFAMFDMLKNADKVSFEEIIARQASIPPFYNLMVTN
                     REIPELTPYYEQRLQFLIHFYEFARQSLMGYSGTWSEWKKLNI"
BASE COUNT          367 a          196 c          242 g          353 t
ORIGIN      
        1 catctttagg gatttaaaaa ggatttatta tgagctttaa aggatttaaa gtggtaatgc
       61 tgatattatt atcaactcaa agttatgcct ctaaattggc atcctccatt gtttgtgatt
      121 caactattga aaatccatgt attgttcagg atagtaaaac ccaattttca cccgtcatta
      181 gatatagaga ggttgcatca attgcggatg tttacggtgg caatatcaca gggattaata
      241 aatttcattt gtcaggaagc gagcaaccaa gcgaaaaggg ttgggaggct attgccgagt
      301 ctatttccag aaaaatgggg gctgaaacaa aaaaagtcat agtgctcgat cttcgccagg
      361 agagtcatgg ttatctaaat gggagagcga ttactttagt tagcgcctat aactggataa
      421 atttgggaaa gtcgaatagt cagagtactt tggaccagga aaactggtta gccggcttaa
      481 gatccagaaa aattgttaac ggtgttttaa ctgtgcccca atatgtagcc aaacaatatt
      541 ctcaaggcaa atcgatggta gtgagcactg taaaaaatga agaatattat gtatataaaa
      601 aaggatttga ttattatcgc atattcatat ccgatcaccg ggctccttta gattctgaag
      661 tggatgcgct tgtcgcactg ataaaaaata atccggaaga cacatggtat catgtccact
      721 gccgtggcgg gaaaggccgt acgacgactg tttttgccat gtttgatatg ttaaagaatg
      781 cagacaaggt tagctttgaa gaaatcatcg cacgccaagc ctccattcca cctttttata
      841 atttgatggt gacgaatcgt gaaatccctg agttaactcc ttattatgag caaagactgc
      901 aatttttgat tcatttttat gaatttgctc gccaatccct tatgggatat tcaggtacct
      961 ggtcagaatg gaaaaagctc aatatctagc atctagtgcc atttgcaaga agatcatatt
     1021 aaaaagcctt catttgaaat gaagcgaatt tcatgaaggc ttggcactca attgttttcg
     1081 gcaaatacca tatcaatctt aaattaagtg ttggttttct tgggatttat ctgctccaag
     1141 ataagaaaat cttgattt
//
LOCUS       DACVWI010000402         1148 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.403, whole genome shotgun sequence.
ACCESSION   DACVWI010000402 DACVWI010000000
VERSION     DACVWI010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.403"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            55..1023
                     /locus_tag="JBH85_15665"
     CDS             55..1023
                     /locus_tag="JBH85_15665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1137 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947623.1"
                     /translation="MIQRGFTMQERREKQGNNSPYLLTPYEMANLVFKTGAISFTVSA
                     GTQPFQYLLNKLQFSQSGTPSGLSGGLFRGMYRGFLPYAIAGQKRGAVAVTHKQTNKV
                     TEEEEFEAPFRQRWWGTIFFSQADLLVSNGLSGKARLQNVGVINAENFKWSLSNFWKL
                     TSVNWGSRSFAGGVNFALIGFAGDYVSSFYKFDKDLYNKILGGATSGVIATLFTTAPN
                     AYADSKLLQTKVAENNRLITVSPYTMFGQMKSHVKAVGLKEAFMTFFKVSYLQQVAVR
                     APQAAITFALIFGMDEYMGPQPLKKVWPGRVEELESENPSPSPTKK"
BASE COUNT          351 a          217 c          224 g          356 t
ORIGIN      
        1 tcagttaata tttgcttaat aattaattgt taccattaca gcacattgat ttaagtgatt
       61 caaagaggat ttacaatgca agaacgtaga gagaaacagg gtaataattc accctatctg
      121 ttgacgccct atgaaatggc caatttagtt tttaaaacag gagctatttc tttcactgtt
      181 tctgcaggaa ctcaaccatt tcaatacttg ctaaacaaat tgcaattttc acaatctgga
      241 actccatctg gattgagcgg aggacttttc cgaggcatgt accgtggctt ccttccttat
      301 gctattgcag gtcaaaaacg cggtgctgtg gctgtaaccc ataaacaaac taacaaagta
      361 acagaagagg aagaattcga agccccattc cgtcaacgtt ggtggggaac catattcttt
      421 tctcaggctg atctattggt tagtaatggt ttaagtggaa aggcaagact gcaaaatgtc
      481 ggcgttatta atgctgaaaa ctttaaatgg tccctttcca acttttggaa attaacttca
      541 gtcaactggg gttctcgttc ttttgccggt ggggtcaatt tcgcattgat aggatttgca
      601 ggagactatg tcagttcatt ttataagttt gataaagact tgtataacaa aatattaggc
      661 ggcgctactt ctggcgtcat tgcgacatta tttacaaccg cccctaatgc ttatgcggat
      721 agtaaattgt tgcaaactaa agtggctgaa aataaccgtt taattactgt gtcaccctat
      781 accatgtttg gtcaaatgaa atcacatgta aaagcggttg gtcttaagga agccttcatg
      841 acctttttca aagttagcta tttgcagcaa gtagcggtaa gagctcctca agcagccatc
      901 acttttgccc tcatttttgg tatggatgaa tatatgggtc ctcaaccttt gaaaaaggtt
      961 tggcctggac gagtcgaaga gcttgagtca gagaatccat ccccatcccc taccaagaaa
     1021 taatcaagag taacaaggat gttatttttc atcattatgc cttaaaaaac aacaatacgt
     1081 tatactgcat aaactgtact tatttaatct acatgacgtt aaaaagatat gattgatttg
     1141 atcttaat
//
LOCUS       DACVWI010000403         1098 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.405, whole genome shotgun sequence.
ACCESSION   DACVWI010000403 DACVWI010000000
VERSION     DACVWI010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.405"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..251
                     /locus_tag="JBH85_15670"
     CDS             <1..251
                     /locus_tag="JBH85_15670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HAU0947624.1"
                     /translation="KAIVSLISDPELEGKVLSTTVQYAQEIPNITDDNKSSFSNLKKS
                     LVRDDFDRLTRELLEINAETFAKDERALSKNLKEESLA"
     gene            265..>1098
                     /locus_tag="JBH85_15675"
     CDS             265..>1098
                     /locus_tag="JBH85_15675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011212593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947625.1"
                     /translation="MPDLEELLQSRSKKKFMKKSYRPWDLSGGPTSLTEKNEFGTTTL
                     ENLVHQKDSVVKNNLSVVAQCISQENTHSTLDNDKDIGKITNKYQSGTDSENHGISNE
                     YQMDNSTDTIKETTRNHLDNNLDNKETSNNQSILEKFIKETSEITNNFNENLEYDHNE
                     IDLISPSKIEQEIIRLSGKQKLIFDMVIEICSARKCFETGPVQTLTLATLAQTTTGTA
                     KTTIKRLIDKGLIFRHQGKNAKGGYINLGINQVIWEHVKNIKNNNKTSIFTSEAILNN
                     RY"
BASE COUNT          466 a          173 c          181 g          278 t
ORIGIN      
        1 ataaagcaat cgtatcactt atttctgacc cagaattaga agggaaggta ttatctacta
       61 cagtacagta tgcgcaagag atacctaata ttacagatga taacaaaagc tcatttagta
      121 atttgaaaaa atccttggta agagatgatt ttgatagatt gacacgagag ttacttgaaa
      181 taaacgcaga aacttttgct aaagacgaac gagcattatc caaaaattta aaagaagaat
      241 ctttagcata gggagagcta taatatgcct gatttagagg aacttctaca gtcgcgtagt
      301 aaaaagaaat tcatgaagaa atcctacaga ccatgggact tatcaggtgg acccacatcc
      361 ttgaccgaga aaaatgaatt cggaacaaca actttagaaa atctagttca tcaaaaggat
      421 tctgttgtta aaaacaatct atcggtagtt gcccaatgca taagtcaaga aaatacacat
      481 tccacattag ataacgataa agatatcgga aagataacaa acaaatatca atcaggtacc
      541 gattcggaaa accatgggat atctaatgaa taccagatgg ataactcaac tgataccatt
      601 aaggaaacta caaggaacca tttagataac aacttagata acaaagagac atcaaacaat
      661 caatcaattt tagaaaaatt tataaaagaa acatccgaga ttacaaacaa tttcaatgaa
      721 aatcttgaat atgatcataa tgaaatagac ttaatttcac cttcaaaaat agaacaagaa
      781 attatacgcc tttcgggaaa gcaaaaactt atatttgata tggtcataga gatatgctca
      841 gcaagaaaat gctttgaaac tgggccagta caaacattga ctttggcaac attggcacaa
      901 acaaccactg gaacagcaaa aaccacgatt aaaagattaa tagacaaggg tttaatattt
      961 agacatcagg gaaaaaatgc aaaaggcggc tatattaact taggcattaa tcaggttatc
     1021 tgggaacatg ttaaaaacat aaaaaataat aataaaactt cgatttttac tagcgaagct
     1081 atattgaata atagatat
//
LOCUS       DACVWI010000404         1076 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.406, whole genome shotgun sequence.
ACCESSION   DACVWI010000404 DACVWI010000000
VERSION     DACVWI010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.406"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            40..975
                     /locus_tag="JBH85_15680"
     CDS             40..975
                     /locus_tag="JBH85_15680"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019233525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HAU0947626.1"
                     /translation="MSPELAKKLAKRNQLTLPNGLIAPDEKSYLSKDFLDFLKVYDTL
                     ASVIKNPQDYYDITFDYLKSNAQEHAIYIEMMYSPDHAEQSSGIPSKEHLAAIQQAID
                     DAKSQFDIVGRIIITAVRHFGVEACERVAKQASIDKFPCVTGFGLGGDEAKFPPQLFT
                     KAYQIAADSGLECTVHAGEFDSAKGMEEAMKTLPIKRIGHGVRVIDSPDIMAMVKDQG
                     IALEVCPTSNIFLGLFKDMNSHPFPKLYEAGIKVSINSDDPPFMSTTLAQEYKRVQKA
                     YGYNNDTMNNITRMAIEAAFVDEKTRKELLTKLEQ"
BASE COUNT          361 a          201 c          204 g          310 t
ORIGIN      
        1 ttaaaaaagg cagaattaca cgtacatcta gaaggaacta tttccccaga actcgccaaa
       61 aaactagcaa aaagaaatca attaactctc cctaatggtc ttattgcacc agatgaaaaa
      121 agttacttat caaaagactt tctcgatttt cttaaggttt atgatacgct ggcatccgta
      181 attaaaaatc cacaagatta ttatgatatt acctttgatt atcttaaatc gaacgctcaa
      241 gaacatgcta tctacattga aatgatgtac tctccggacc atgccgagca atccagtgga
      301 attccttcaa aagagcattt agcagcaatt caacaggcta ttgatgatgc taaaagtcaa
      361 tttgatattg ttggacgtat tattatcact gcagtacgcc attttggcgt agaagcatgc
      421 gaacgcgtcg caaaacaggc ttctatagat aaatttcctt gtgtaacagg atttggatta
      481 ggaggagatg aagcaaaatt tcctcctcaa ttgtttacca aagcttatca gatagcagca
      541 gactccggat tggaatgcac cgttcatgcc ggcgaatttg attcagccaa aggaatggaa
      601 gaagcaatga aaactctgcc aattaaaaga attgggcatg gggttcgagt gattgactca
      661 cctgacatta tggccatggt taaagaccag ggtattgcat tggaagtgtg cccaaccagt
      721 aacatatttt tgggattatt caaagacatg aatagccacc cttttccaaa gctttatgaa
      781 gcagggatta aagtcagtat taattccgat gatcctcctt ttatgagcac tacacttgct
      841 caagaataca aaagagttca aaaagcttat ggctataaca atgacacaat gaataatatt
      901 acgcgtatgg ctattgaagc tgcttttgtt gatgaaaaaa cccggaaaga acttttaaca
      961 aaattagaac aataatctca gtcttatatt cctgttgtca gtactaagtc cctgctgact
     1021 tgaggcgata acgatactgt tatattttta caggttggtg ttgatacatg gcttaa
//
LOCUS       DACVWI010000405         1068 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.407, whole genome shotgun sequence.
ACCESSION   DACVWI010000405 DACVWI010000000
VERSION     DACVWI010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.407"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..780
                     /locus_tag="JBH85_15685"
     CDS             <1..780
                     /locus_tag="JBH85_15685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947627.1"
                     /translation="KEALRVLTSSPFNLDNKEHTQALEKYIKQFELSVNQMYLYQAMS
                     TALTAWGGSWIVGRFLPIPEFANHLLAACLYLGVSGYILESFSMTDFYEQLKEMKTLY
                     NWCLKNNKENYSTDIDNTNNLLYPDIQRMIKLVAPLCSTDFMIAWPKEVKTTETQSGI
                     LSNTLSIGYSIVSAPFSLFSTASKPSQDQVQRIKDLKVQVETRGLDLGVFAGFEQAVK
                     YFATNSDFRDLLKAKLTQPVNSFKNLLQTTIPGMLAGSNSK"
BASE COUNT          367 a          200 c          188 g          313 t
ORIGIN      
        1 aaagaagccc taagagttct gacgtcatct cccttcaacc tggataataa ggaacacact
       61 caggcattgg aaaagtacat caaacaattt gagttaagtg tcaatcaaat gtacctctat
      121 caagcaatga gtactgcatt aacagcttgg gggggctcgt ggatagttgg aaggtttttg
      181 cctattcctg aatttgcgaa tcaccttctt gcagcctgtc tctatttagg cgtttctggt
      241 tacattcttg aatcatttag catgaccgat ttttatgaac aattgaaaga gatgaaaaca
      301 ctctataatt ggtgtctaaa aaataacaaa gaaaactata gcactgatat cgataatacc
      361 aataaccttt tgtatcctga tatccagcgc atgattaaac tagtcgcccc tttatgctct
      421 actgatttta tgattgcctg gcctaaagaa gtaaaaacca cagaaactca aagtggaatc
      481 ctatccaaca cattgtccat aggctattct atagtatcag cgccattttc actgttctca
      541 acagccagta aaccgagtca ggatcaagtg caacgaatta aagacctaaa agtacaggta
      601 gaaacaagag gtcttgactt aggggttttt gctggttttg agcaggcagt caagtatttt
      661 gctacgaact ctgattttag agatctattg aaagccaagc taactcaacc tgtcaactca
      721 tttaaaaatt tgttgcaaac aaccatacca ggaatgttgg caggatctaa ttcaaaataa
      781 tagtaataga tccctcatgc ttaaatatta cctaacggtt gtattaggta aagaactgat
      841 gtttttcttg ccgaccttaa gcattattaa aggttggcat tagcattaaa gaatggaggc
      901 ataatcatca ttacggccaa tatgaagatg attaacagca aataatgtca ttgatttact
      961 ccacaaaggt ttctcaagat gaaaactatt tttgcaaaca aggaattgct ttacaatcaa
     1021 tacaaaaaaa tgtttctaga gcagatatct gacatcaaca aattaaaa
//
LOCUS       DACVWI010000406         1064 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.408, whole genome shotgun sequence.
ACCESSION   DACVWI010000406 DACVWI010000000
VERSION     DACVWI010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.408"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            35..>1064
                     /locus_tag="JBH85_15690"
     CDS             35..>1064
                     /locus_tag="JBH85_15690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947628.1"
                     /translation="MNTILIFIQSETQFNELKRIPPILDKNKYKVLFCFDISNETIKH
                     KLQNFCTEQQWTYVSLKSNLPCELIENGNITLAQNNLSTLKKNIRQYLPKLIPKTGYY
                     WQRANSELNSFWTIHDTNNENLELLEILFSKYKVNLILVGEDGFGLNPSVYKAAHKKG
                     IPMISIPYEFSTSKQIFESILRTPDYENLYGKQQFWNWISLLLFRKKWSRKIGGKRVL
                     RTSGYLILAQEFFRYAPSLPWTVHGGHSRYLAAESDFMIEHYKGENIKASKIVLTGSL
                     AFDDLYNQLKNNQNLHNAYLKTATITSNQICILSAFPGNYITDRKEFCEFKSYNDLVD
                     YWISALKNL"
BASE COUNT          403 a          161 c          153 g          347 t
ORIGIN      
        1 agcataatat ttaactattt tgaatgacaa ttacatgaat acaattctta tttttataca
       61 atccgaaaca cagtttaatg aattaaaacg tatcccacca attcttgaca agaataaata
      121 taaagttttg ttttgctttg atattagtaa tgaaaccatc aaacataaac ttcaaaattt
      181 ctgtactgaa caacaatgga cttatgtctc attaaaatct aatttacctt gtgaactcat
      241 agaaaatggt aatattactt tagctcaaaa taatttatct actcttaaaa aaaatattcg
      301 gcaataccta ccaaaactca tacctaaaac tgggtattat tggcaacgtg caaatagcga
      361 attaaattct ttttggacta tccatgatac aaacaatgaa aacttagaac ttttggaaat
      421 tcttttttca aaatataaag tgaatttaat ccttgtggga gaagatggat ttggtttaaa
      481 cccgtcggta tataaggctg ctcacaaaaa agggattcca atgataagca ttccttacga
      541 gttctcaaca tcaaaacaaa ttttcgaaag cattttaaga actccggatt acgaaaatct
      601 atacggtaaa caacaatttt ggaactggat ctctttactt ttatttagga aaaaatggag
      661 tcgtaaaatt ggtgggaaaa gagttttacg aacatcagga tacctcattc ttgcacaaga
      721 atttttcaga tatgctcctt cacttccttg gactgtgcat ggaggacact ctagatattt
      781 agcagcagaa agtgatttta tgatagaaca ttacaaagga gaaaatataa aagcttcaaa
      841 aatagtttta acaggttctc tagcatttga cgatttgtat aatcaattaa aaaataatca
      901 aaatttacat aatgcctatt tgaaaacggc aactattact tctaatcaaa tttgtatatt
      961 atccgcattt ccaggaaatt atataacaga tagaaaagag ttttgtgaat ttaagagcta
     1021 caatgatttg gttgattact ggatttcagc attgaaaaat ttac
//
LOCUS       DACVWI010000407         1063 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.409, whole genome shotgun sequence.
ACCESSION   DACVWI010000407 DACVWI010000000
VERSION     DACVWI010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.409"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..753
                     /gene="pieC"
                     /locus_tag="JBH85_15695"
     CDS             <1..753
                     /gene="pieC"
                     /locus_tag="JBH85_15695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieC/LirE"
                     /protein_id="HAU0947629.1"
                     /translation="LINNDQIEPNTTCKLFSNNQAIVLATYKKDKNSLQYADIDPVVT
                     LLQGKNTIVPSDACRAFPKAEKIVIAAYKSDPLSLQFADLGLVQQLLRKGSINLEHAS
                     KAFTESSQFKEANEAYQLLKSLKLLPKNEKETEKAKRIELLKSIDQKLEITNLRQELY
                     PLISNMCIRLLDDIRILSLEDTIIKNTRLSKLISSKQCDINTLKTLENKKMELTKTCS
                     LAKSNFTLFGATDNKVDGGNANTHNHITPENK"
BASE COUNT          385 a          181 c          172 g          325 t
ORIGIN      
        1 ttaattaata atgatcagat tgaaccaaac acaacttgta aactattctc taacaatcaa
       61 gcgattgttt tggcaaccta taaaaaggac aaaaactcac tccaatatgc ggacatagat
      121 ccggttgtaa cgcttttgca agggaagaat accatcgtac cctctgatgc ttgtcgggct
      181 tttcctaagg cagaaaaaat agtcatcgca gcctataaat cggatccatt atcgttgcaa
      241 tttgccgatc ttggtttggt tcaacaatta ttacgaaaag gttctattaa tctcgagcat
      301 gcttctaaag cttttacaga gagctcacaa ttcaaggagg ccaatgaagc ttatcagctt
      361 ttaaaatctc tgaagcttct gccaaaaaat gaaaaagaaa ctgagaaagc caagagaatc
      421 gagttattaa aatcgattga tcaaaagctg gaaattacta atttgagaca agaactttat
      481 cccttaattt caaatatgtg tattcgatta cttgatgata ttcgaatcct gtcccttgaa
      541 gatacaataa tcaaaaacac cagattgtcc aagttaatca gttcgaaaca gtgtgatatc
      601 aatacattaa aaacacttga aaataaaaaa atggaattaa ctaaaacatg ttctctggca
      661 aaatcaaatt ttactttatt tggagctaca gataataaag ttgatggagg aaatgctaat
      721 actcataacc acatcactcc agagaataaa taaaagtgtt ttgttggaat tggtcgtata
      781 gatgcggcca atttgttaaa ttgaattagt ttcggcttaa tctgacacag ttatttaaac
      841 actgctatca agctgattgg gccttatcag aataatctga tggcagcatt aagatgatca
      901 aaaacacaac cattcttcta attagctaat ttttataatt gatatttacc atccagaggt
      961 ttctgcaagt ttgcagaaac ctcgcaaaaa ataatattta tctatcagtt accgagttag
     1021 gtaaaagtat aggataaatc gttttcattt atattattat tcg
//
LOCUS       DACVWI010000408         1044 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.410, whole genome shotgun sequence.
ACCESSION   DACVWI010000408 DACVWI010000000
VERSION     DACVWI010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.410"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            16..>1044
                     /gene="lbtU"
                     /locus_tag="JBH85_15700"
     CDS             16..>1044
                     /gene="lbtU"
                     /locus_tag="JBH85_15700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore legiobactin import outer membrane
                     protein LbtU"
                     /protein_id="HAU0947630.1"
                     /translation="MLNVAGLAFADAGDSLFKNEKLTYDGHLFFNAANSAIQSEKYLL
                     NQQLSNIKMGSELQVTDWNKMKGLLIYNTLPTPVAPQFYFEQFYDELQIESSNIFFAF
                     GKKWLAFGNYKSDLIYKPLTKALGQTNEVAAIIGYDSLYYANASFFKPYSRISTSSLP
                     LYYNLNTGVHNQSMDAGVSYLYSLAESQLFQYNKGFGGLLSQSLKTRVPGFATYFNLK
                     YKKTSTYLTYVTAITPFALEDMSYNNRGASPKALSIQNSYDVNIKKFSFKIIGFYDYT
                     FQALALGIPKQRLGLGLSATPFPYLGIQFQYSRDYSYRNNAIASGINHFVNGRNTKMN
                     NLALQTILN"
BASE COUNT          352 a          188 c          168 g          336 t
ORIGIN      
        1 attttaggaa tattaatgtt gaatgttgcc gggttagctt tcgcagacgc tggagactct
       61 ttatttaaaa atgaaaaatt gacttacgat ggacatctgt tttttaatgc cgccaactca
      121 gcaatacaaa gtgaaaaata tttactgaat cagcagctgt ccaatatcaa aatgggatct
      181 gaattacagg tgactgattg gaacaaaatg aaaggcttgc taatttataa caccttgcct
      241 accccagtgg ctcctcaatt ttattttgag caattttatg acgaactcca aatagagtct
      301 tcaaatattt tctttgcatt tggaaaaaaa tggctcgcat ttggaaatta taaaagtgat
      361 ttaatttata aaccacttac aaaagccttg ggacaaacca acgaagtggc cgctattatt
      421 ggatacgatt ccttgtatta tgctaacgct tcttttttta aaccctattc tcgcataagt
      481 acatcatcac ttccgcttta ttacaatctg aatacaggag tacataatca atcaatggat
      541 gcaggagtca gttatttata ctctctggca gaaagtcaat tatttcaata caacaaaggt
      601 tttggcgggc ttttatcaca atcattaaaa acaagggttc caggatttgc aacctatttt
      661 aatttaaaat ataaaaaaac aagcacttat cttacctatg ttactgcaat cacccccttt
      721 gcattagaag acatgagtta taataatcga ggagcttcac caaaggcatt gagtatacaa
      781 aatagttatg atgttaatat taaaaaattt tcttttaaaa tcattggttt ttatgactac
      841 acttttcaag ctctggcact cggaataccg aaacaaagac tgggactggg attgtccgca
      901 accccttttc cttatcttgg tattcaattt cagtattcca gagactatag ttatagaaat
      961 aatgccatag cctcgggtat caatcatttt gtaaatggcc gtaatacaaa aatgaataat
     1021 ttggcattac aaaccatact gaat
//
LOCUS       DACVWI010000409         1039 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.411, whole genome shotgun sequence.
ACCESSION   DACVWI010000409 DACVWI010000000
VERSION     DACVWI010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.411"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            39..380
                     /locus_tag="JBH85_15705"
     CDS             39..380
                     /locus_tag="JBH85_15705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947631.1"
                     /translation="MSMTLSLGQKYGSFFWGCTKFAVSPYTNTFLSIVKSKEVEEADC
                     LSKALAASIVCGVLTFVVPVLPVLCAFTFTLSSIAMLLAVASMFVTYPIAILGDALCG
                     PELSDDYHYSF"
     gene            571..>1039
                     /locus_tag="JBH85_15710"
     CDS             571..>1039
                     /locus_tag="JBH85_15710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947632.1"
                     /translation="MLILIQKGKNMSKFPHKTPETLRQYFQAKDLGQLTEINHSYGPH
                     FENLENAIDRLTQEISTQKGKLSGFLKEQEKISQNYGKIVIEQERFENNRASIMSDSC
                     TGAERYLALAALGMSPFDCYYSNSRSLQDQIDTTNKKLNELNSHFAFWKNQRSK"
BASE COUNT          348 a          197 c          179 g          315 t
ORIGIN      
        1 taattgctga cctaatttaa gttaaattgg agtaaaaaat gtcaatgact ctctcgttag
       61 gtcaaaaata cggctcattc ttttggggat gtactaaatt tgctgtttcc ccctatacca
      121 atacttttct atccatcgtc aaatcgaaag aggttgaaga agcagattgt ttatccaagg
      181 ctcttgctgc cagcattgtc tgcggagttc tcacttttgt tgttccggta ttaccagttc
      241 tatgcgcttt tacgtttacc ctgtcttcaa tagccatgtt gcttgcggta gccagcatgt
      301 tcgtgactta tccgattgca atacttggtg atgcactgtg cggaccagaa ttgtctgacg
      361 attaccatta ttctttctaa tcagttttaa gataatttca tttgaaatca tcataagtat
      421 caacaaacag gaagagtatt tttaaactcg taaaaaatac tcttcctgtt tgatattgag
      481 aaaaaatgaa cccagccatc aacaaaagcc attaatttgc tcattatgca gcatatatgt
      541 ttgatatgat caaaaagcat atgctaagat atgctgattt tgattcaaaa aggtaaaaac
      601 atgtctaaat tccctcacaa aacccccgag acacttcgtc aatatttcca agcaaaagat
      661 ctggggcaat taacagaaat taatcattcc tatgggcctc attttgaaaa tctggaaaac
      721 gcgattgata gactgactca agagatatcc actcaaaaag gaaaactatc cggattttta
      781 aaagaacagg aaaagatttc ccaaaattat ggaaaaatcg taattgaaca agaacgattt
      841 gaaaacaatc gtgcatcgat tatgagcgac tcttgtaccg gagcagaacg ctatttagca
      901 ctcgccgcac ttggaatgtc gcctttcgat tgctactata gcaatagcag gagtttacaa
      961 gatcaaatcg atacgacaaa caaaaaatta aatgaattaa attctcattt tgctttttgg
     1021 aaaaatcaaa gatcgaaag
//
LOCUS       DACVWI010000410         1037 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.412, whole genome shotgun sequence.
ACCESSION   DACVWI010000410 DACVWI010000000
VERSION     DACVWI010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.412"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..946)
                     /locus_tag="JBH85_15715"
     CDS             complement(<1..946)
                     /locus_tag="JBH85_15715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAU0947633.1"
                     /translation="MNIILNVFLIFVSAILTKLFALFAQHTKLIDIPNERNLHSRPTV
                     RGGGVVFIGLSLFCWFFICNSQFFLTLDQFIFSIAIILIATISFIDDFYNLSVTIRFF
                     FQCLIAFLIVIFILPSQLDFGLFLFENTYLIAFFLFFAVIWAINHFNFMDGLDGFCAS
                     QAIFLLAAYALFLNSAGSLIYQDFCLILISSLAGFLIFNFPPAKIFMGDVGSASLGLI
                     TFFIAIIAQKNYQIPILYWFILNSLFLFDSTVTLIRRIIKHEKWFSPHKKHAYQRLKQ
                     LGINSRFILLGQMLLNCSFLSIILLHRIIGFNLNYLMLL"
     gene            complement(930..>1037)
                     /locus_tag="JBH85_15720"
     CDS             complement(930..>1037)
                     /locus_tag="JBH85_15720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dehydratase"
                     /protein_id="HAU0947634.1"
                     /translation="VSNKKIKSQLGWTPPVSSIDGLEKTVKWYQNEYNT"
BASE COUNT          431 a          161 c          146 g          299 t
ORIGIN      
        1 ggagcaacat gagataattg agattaaaac caattatccg atgcaataga ataattgata
       61 aaaaactgca atttaataac atttgaccta ataaaataaa cctcgagtta atgcccaatt
      121 gctttaatct ctgataagcg tgctttttat ggggactaaa ccatttttca tgctttataa
      181 tccttcgaat taaagtcact gtagaatcga aaagaaataa tgaattcagg ataaaccaat
      241 atagaattgg aatttgatag ttcttttgag caatgattgc tatgaaaaaa gtaattaatc
      301 ctaaggaggc gctacctaca tctcccataa atatcttggc tggtgggaaa ttaaaaatta
      361 aaaaccctgc taaactagaa ataagaatca ggcaaaaatc ttgataaatt aatgaacctg
      421 ctgagtttaa aaacaacgca tatgcagcta acaaaaaaat cgcttgggaa gcgcaaaaac
      481 catcaagccc atccatgaaa ttaaaatgat taattgccca aataactgca aaaaatagaa
      541 aaaaagcaat taaataggtg ttttcaaata gaaataaacc aaaatctaat tgggaaggca
      601 atataaatat aactatcagg aatgcaatca gacattgaaa aaagaatcga attgtaactg
      661 acaaattata aaaatcatct ataaaactta tagttgctat taaaataata gctatcgaaa
      721 aaatgaattg atccaatgtt aaaaaaaatt gtgagttaca aataaaaaac caacaaaata
      781 aactaagtcc aataaagacg acccctcctc ctcggactgt aggtcttgag tgtaaatttc
      841 tttcatttgg aatatcaatc aattttgtat gctgcgcaaa caaggcaaat aatttagtca
      901 aaattgctga gacaaatatt aaaaatacat taagtattat attcattttg ataccatttt
      961 accgtctttt ctaatccatc aatagaacta actggtggtg tccaccctaa ttgagattta
     1021 attttcttat tacttac
//
LOCUS       DACVWI010000411          993 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.413, whole genome shotgun sequence.
ACCESSION   DACVWI010000411 DACVWI010000000
VERSION     DACVWI010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.413"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            56..796
                     /locus_tag="JBH85_15725"
     CDS             56..796
                     /locus_tag="JBH85_15725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947635.1"
                     /translation="MGITNDKEMVVRNLKFSHPFSIGISLFLFILFFVPLLSYGAKTS
                     NMRGKRYCEIILSKTISSYAVYNTWGLNDCPEQLWSKVSMPAVKKETGASFVHLNGPR
                     YWVIDGFKNTSLINPAIKTISGIPMREAGILHLSLIDLFKNKPYQSHIVDRKTTWIYQ
                     EGKPVFELIDPTGQVFVMQSYSVQKYPQIMDNLKQLGDKLQLPKGWKFKTGVLNKLET
                     IEAVNNKAVVVQDNFLNTYQKASHDFLK"
BASE COUNT          337 a          166 c          167 g          323 t
ORIGIN      
        1 aatgaatttc aataaaaaat attttttatt caatgagtta taaattaaaa tgtaggtggg
       61 tatcactaat gacaaggaga tggtcgtgcg caatctaaaa ttttctcatc ccttttctat
      121 tgggatttct ttatttttat tcattttgtt ctttgttccc ttgctctctt atggcgccaa
      181 gacatccaat atgcgtggca aaagatattg tgaaatcatc ctatcaaaaa ccatctcaag
      241 ttatgctgtt tataatactt ggggactaaa tgattgccca gaacaattat ggagtaaagt
      301 ttctatgcct gcagtaaaaa aggaaacagg ggcttctttt gtccatctca atggtcctcg
      361 atattgggta attgacggat tcaaaaacac ttctttgata aatcctgcta tcaaaacaat
      421 tagtggaatt ccaatgcggg aagcaggtat tttacatctt agtttaatag atttatttaa
      481 aaataaacct tatcaatctc atatcgtgga ccgtaaaaca acatggatct atcaagaagg
      541 aaaacctgtc tttgaattga ttgatcccac tgggcaagtt tttgtcatgc aatcctatag
      601 tgttcaaaaa tatccgcaaa taatggataa cctcaaacaa ctaggtgata aacttcaact
      661 tcctaaaggt tggaaattta aaactggtgt gcttaacaag ctagaaacaa tagaagctgt
      721 caataacaaa gccgtagttg tccaggataa ttttttgaat acctatcaga aagccagcca
      781 tgatttcctg aaataaattc agctgataat tggttacttt cataggtcat gagtttagta
      841 tgcgttgaca atccatcctc tactttgggg gtaatggcat taatgaacgt gttaatggca
      901 atttcaacca tctataaaac ctatgattag caaaccaagg taaaataaca aacattttac
      961 aaatgttgta ttataattaa cctatatgga gta
//
LOCUS       DACVWI010000412          977 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.414, whole genome shotgun sequence.
ACCESSION   DACVWI010000412 DACVWI010000000
VERSION     DACVWI010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.414"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..146
                     /locus_tag="JBH85_15730"
     CDS             <1..146
                     /locus_tag="JBH85_15730"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095538.1"
                     /note="penicillin-binding protein 5; removes C-terminal
                     D-alanyl residues from sugar-peptide cell wall precursors;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HAU0947636.1"
                     /translation="VGDIIVQFNNNIVSSKPLYALQTVESGGFYTRTKDSIRLAFKRW
                     FGS"
     gene            159..>977
                     /locus_tag="JBH85_15735"
     CDS             159..>977
                     /locus_tag="JBH85_15735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid aminotransferase"
                     /protein_id="HAU0947637.1"
                     /translation="MSIAFVNGKYCCQSEAKISIFDRGFLFGDSVYEVLPVYHGQPYF
                     VDQHLDRLFSNMKKIKMIIPNYDWHGLIHRLISENNGGNLQVYIQVTRGNQGVRKHDI
                     PTSITPSVIAFTMHNPFPTLEDKEQGMSAKLVEDFRWMRCDIKTTSLIANILLNDEAV
                     SAGFHTAILARNGLITEGSSTNVFIVAQDGVIKTPPMNNFCLPGITRQVVIEIIKKLD
                     LKFREIEISISELFSAQEVWITSTTKEVFPITKINDSLINGGKVGEYWRIINDSY"
BASE COUNT          318 a          162 c          193 g          304 t
ORIGIN      
        1 aagttggcga tattattgtg caatttaata acaatatcgt ttcaagcaaa ccgctttatg
       61 ctttgcaaac agtggagtca ggtggattct ataccagaac aaaagattcg ataaggttag
      121 catttaagcg atggttcggc tcctaggata ttttcataat gagtatcgca tttgttaacg
      181 gcaagtattg ttgtcaatct gaagcaaaaa tttcaatatt tgatcgaggg tttctttttg
      241 gtgactcggt ttatgaagtg ctgcctgttt accatgggca gccttacttt gtagaccaac
      301 atcttgaccg attattctca aatatgaaaa aaattaagat gattatacca aattatgatt
      361 ggcatggttt aattcataga ctaatatcag aaaataatgg cggtaattta caagtatata
      421 tccaagtcac acgagggaat caaggggtgc gcaagcatga tatccctact tccatcacac
      481 cttctgttat cgcattcact atgcataatc catttcccac cctcgaagat aaggaacagg
      541 gaatgtcagc aaaactggtt gaagattttc ggtggatgag atgtgatata aaaactactt
      601 ctttaattgc caatatatta ctgaatgatg aggctgtatc tgcaggattc cacactgcaa
      661 ttcttgcccg gaacggtcta attacagagg gaagtagtac caacgtattt attgtcgcac
      721 aggatggtgt tattaagaca ccacccatga ataatttctg tttaccagga attactcggc
      781 aagttgttat tgaaataatt aaaaaattag atttaaagtt cagagaaata gaaattagca
      841 tttcagagct tttttctgct caggaagttt ggataacaag tacgacaaaa gaagtattcc
      901 ctattacaaa gattaatgac tctttgatta atggcggaaa agttggcgaa tattggcgga
      961 taattaatga ttcctac
//
LOCUS       DACVWI010000413          943 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.415, whole genome shotgun sequence.
ACCESSION   DACVWI010000413 DACVWI010000000
VERSION     DACVWI010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.415"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(198..857)
                     /locus_tag="JBH85_15740"
     CDS             complement(198..857)
                     /locus_tag="JBH85_15740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947638.1"
                     /translation="MLTKNLNEALSAIKYVKSKLVYGSNTEEDSKKPNWEPGRIILLR
                     KEVHALAVVYARSHNGKAGFDIISKLTHAALLKYGFGNCGEQAQTAFCYLQSRGVAPL
                     DYCQTSIGEHCLIVIGRVSGSDPNDISTWGEDAVICDPWAEKAYPLSEFRAMQSPDND
                     IRYPEICYANGKSPKPYLAGELISHHRIEPASKASSLSFFKKENYEHSQLNSATPMLI
                     A"
BASE COUNT          262 a          175 c          188 g          318 t
ORIGIN      
        1 ttttcttact ggatgatttt ggaattattt tgtaaaagag agcatcagat atcctggctt
       61 ttccttgctc gcacaaggtg tgttttttct ctttgccaga ttttaatcaa tagcgccagg
      121 ataatttgat gattcgttac aacaaaagat agtaattggt acacatggta gtcattgcac
      181 tttggcactg gaatgcttta agcaataagc atgggtgtag cactatttaa ttgtgaatgt
      241 tcgtaatttt cttttttgaa gaaagagagc gatgatgctt tcgaggcggg ctctattctg
      301 tgatgactga ttaattcccc tgccaaataa ggctttggac ttttaccatt agcataacat
      361 atctcaggat agcgaatgtc attatcggga ctttgcattg ctctaaattc agaaagagga
      421 taggctttct cagcccaggg atcacaaatt acagcatcct ctccccaggt cgaaatatca
      481 ttgggatcag aaccactaac gcgcccaatc actatcaggc agtgctctcc tattgatgtt
      541 tgacaataat caagcggcgc aactcctcga gattgcagat aacaaaatgc tgtttgtgct
      601 tgctcaccgc aattgccgaa tccgtatttt aagagtgccg catgggttaa tttggagatg
      661 atgtcaaatc ctgctttgcc attatgtgaa cgagcataga cgactgctag tgcatgaact
      721 tccttcctta agagaataat tcttcctggc tcccaatttg gcttctttga atcttcctcg
      781 gtattggaac cataaactag tttggatttt acatatttta ttgcgcttaa ggcttcattc
      841 agatttttgg tgagcattaa aaaaatctca gagagtaaaa cagagttatt gtatcaaata
      901 aaatacaatt tgttaatatt ttatctgttt gggtttgttt tta
//
LOCUS       DACVWI010000414          939 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.416, whole genome shotgun sequence.
ACCESSION   DACVWI010000414 DACVWI010000000
VERSION     DACVWI010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.416"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..137
                     /locus_tag="JBH85_15745"
     CDS             <1..137
                     /locus_tag="JBH85_15745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAU0947639.1"
                     /translation="GRKEGTGLGLAYCKLLMQAAGGDISCKGKKNEFAHFTLKFPKID
                     "
     gene            complement(185..880)
                     /locus_tag="JBH85_15750"
     CDS             complement(185..880)
                     /locus_tag="JBH85_15750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HAU0947640.1"
                     /translation="MPEETSTNLPKSLSHFLIQSDLDYKNSLSSIPLFDVKRTIFWDD
                     NLRKMFASIFYHLRGHFINFLWYVANFADNEASKQIIIQNIYEEIGIGNRFSHEKLYE
                     RFAKECGVDIHDEIVNETNYIPFAKEFNKAHLSWLAQHDPKDHLCAFAAYERLDNLDY
                     PFLVELAKSMKISQHGMTFFNVHTHVDHFDTTLQLIVPIWEESPQRLIESFHFIQTHQ
                     LGMWEQFSNALFN"
BASE COUNT          337 a          158 c          157 g          287 t
ORIGIN      
        1 ctggcagaaa agaaggaact ggtttaggct tggcctattg taaacttctg atgcaagcag
       61 caggcggtga tatttcctgt aaagggaaaa aaaatgaatt cgctcatttc actttaaaat
      121 tccccaaaat tgattaattc ctatttaaca taagaaatcc cgagatttct tatgttaaaa
      181 aatatcaatt aaataaggca ttggaaaact gttcccacat ccctaactga tgagtttgaa
      241 taaaatgaaa tgattctatc agacgctgag gtgattcttc ccatatgggc acaatcaatt
      301 gtagagtggt atcaaaatga tcaacatggg tatgtacatt aaagaaggtc atgccatgtt
      361 gagatatttt catcgatttg gcaagttcaa caagaaaagg ataatcaaga ttatccaagc
      421 gctcataagc cgcaaaagca cacaaatgat ctttaggatc atgttgcgcc aaccaggata
      481 aatgagcttt attaaattct ttggcaaaag gaatgtagtt ggtttcattc actatttcat
      541 catgaatatc aacaccgcat tcttttgcaa aacgttcata aagcttttca tgggaaaaac
      601 gattgccaat tccaatttct tcataaatat tttgaataat aatttgtttt gaagcttcgt
      661 tatcagcaaa attggcaacg taccacaaaa aatttataaa atgccctctt aaatgataaa
      721 aaattgatgc aaacattttt ctaaggttgt catcccagaa aatagttcgc ttaacgtcaa
      781 ataaaggaat cgaactcaat gagttcttat aatccaaatc agattgaata agaaaatggc
      841 tgagtgattt tggtaaattt gtgctcgtct cttcaggcat gattcacact tcatatgaaa
      901 taagttaagt ccagcaagtt aattaaacat tataccatc
//
LOCUS       DACVWI010000415          905 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.417, whole genome shotgun sequence.
ACCESSION   DACVWI010000415 DACVWI010000000
VERSION     DACVWI010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.417"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            94..>905
                     /locus_tag="JBH85_15755"
     CDS             94..>905
                     /locus_tag="JBH85_15755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947641.1"
                     /translation="MSLALPDFEFSFATRDEFDRKPVAKKLINILNSNIDISPMVIDG
                     SWGTGKTEFCRKTIKLINDEFNETLICAYIDAFEADHTNDPLIPIVAAISELIEDSSK
                     KIAFLNKAKAIFRYGLKASARASVAWLLRSNTETLDQEFQKELEKAVDEGSQNLVDGV
                     ITDYQEAKKDINSLKLILQDLTVEKKLVIFIDELDRCKPDFAIAIIEKIKHVFDVANV
                     KFILVTNYTQMKASVNHCYGLALDAHRYLDKFIKFKFYLPTDKYSNKRKQHVS"
BASE COUNT          322 a          145 c          157 g          281 t
ORIGIN      
        1 aataatattt atttgattca tataattgct cagcttaagc cttgaaatta tctaaacaat
       61 ataatttaat ggaccctctc ggtcacccaa ccagtgagtt tagctttgcc tgattttgaa
      121 ttttcatttg caacccggga tgagtttgac cggaaaccag tggccaaaaa actaattaat
      181 atacttaata gtaatattga tatttcacca atggtaatcg atgggagctg gggtacgggt
      241 aaaacagagt tttgccgtaa aaccataaag ctaattaacg atgaatttaa tgaaaccttg
      301 atttgtgcct atatagacgc atttgaggct gatcatacaa atgacccatt aatcccaatc
      361 gttgctgcaa tatcggagtt aattgaggat agctccaaga aaattgcctt cttaaacaaa
      421 gcaaaagcta tttttcgtta tggcttaaaa gcttctgcta gagcaagcgt tgcttggtta
      481 ctaagatcaa atacagaaac attagatcag gagttccaaa aagagttaga gaaagctgtt
      541 gatgaaggta gtcaaaatct tgttgatgga gttattacag actatcaaga ggctaaaaaa
      601 gatatcaata gcttaaaatt aatcttacaa gacttaactg tcgaaaaaaa gcttgtcatc
      661 tttattgatg aacttgatag atgtaaaccc gattttgcaa tcgcaataat tgagaaaatt
      721 aaacatgtat ttgatgtcgc aaatgttaaa ttcattttgg taacaaacta cacccagatg
      781 aaagcctctg tgaaccattg ctatggctta gctcttgatg ctcatagata tcttgataaa
      841 tttattaaat tcaaatttta tttacctacg gataagtatt caaataaaag aaaacaacat
      901 gtgtc
//
LOCUS       DACVWI010000416          874 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.418, whole genome shotgun sequence.
ACCESSION   DACVWI010000416 DACVWI010000000
VERSION     DACVWI010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.418"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..758)
                     /locus_tag="JBH85_15760"
     CDS             complement(<1..758)
                     /locus_tag="JBH85_15760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HAU0947642.1"
                     /translation="MYLSLPVQSFLLFIFFSFTPLFVVAAEKTQLNFFLRPDMYFGFS
                     VIRDTAHYNFKRNETSQELNFTDFDHFDWYGSGVGGEIYLGYEKFFRTHYYFSLEGFF
                     NRSSNEGKIYFFDSNELYSRILNGAFKQKWQSGLAIHPGIYLPSVGIIYGRVGWIISD
                     VNLSGSITQSGLFGSFSGRFSNTKKKNGVQLGTGLELELTQNWRCRVEWDWNRLQDFT
                     FDTQGKDSNNHRYQTTRIAKHPILEQFKLGLNWR"
BASE COUNT          304 a          176 c          126 g          268 t
ORIGIN      
        1 aaacgccaat tcaaacccaa tttgaattgt tctaaaattg gatgcttggc gattctggtc
       61 gtttgatacc tatgattatt agagtcctta ccctgtgtat caaaagtaaa atcttgcaac
      121 cgattccaat cccactctac acggcaacgc caattttgag ttaactccaa ctcgagacct
      181 gtacctaatt gaactccatt cttctttttg gtatttgaaa atcttccact gaatgagcca
      241 aaaaggccac tctgagtaat gcttccgctt aggttgacat cactgataat ccagcctact
      301 cgtccataga tgattcccac agaaggcaaa taaataccag ggtgtatagc tagaccagac
      361 tgccattttt gtttgaatgc accatttaat attcttgaat aaagttcatt ggaatcaaaa
      421 aagtagattt ttccttcatt ggaactacgg ttaaaaaaac cttctaaact aaaataataa
      481 tgtgtccgga aaaatttttc atagcctaaa taaatttctc ctccaactcc cgaaccatac
      541 cagtcaaaat gatcaaagtc agtaaaatta agctcttgac tggtttcatt ccttttaaaa
      601 ttgtaatggg ctgtgtctct aataactgaa aatccaaaat acatatcggg tcttagaaaa
      661 aaattgagct gtgttttttc agccgctaca acaaataaag gtgtaaaact gaaaaagata
      721 aacaacaaga atgactgaac aggcaaactt aaatacacga ataattcctt ttactaagtc
      781 aaaaaacagc tattatctta tatgacacgt atctgttttg catcagcgat taaaatacta
      841 attttactta tcctatggac aaaactctat attt
//
LOCUS       DACVWI010000417          856 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.419, whole genome shotgun sequence.
ACCESSION   DACVWI010000417 DACVWI010000000
VERSION     DACVWI010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.419"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(397..>856)
                     /locus_tag="JBH85_15765"
     CDS             complement(397..>856)
                     /locus_tag="JBH85_15765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947643.1"
                     /translation="GDSILINGQGDIDKQLIAGRDAEELVDILENDLELKEISLKNLD
                     IDSCMMGRVESYRHELKRHLKNFQTITTYTDLCTASQSGGVPYRMWIEQRADRDVFYT
                     ESDLNKKGTRIIEYTDTYKNSLKEIWKTNPYNLEEIDLSEYIDILVIASC"
BASE COUNT          253 a          165 c          129 g          309 t
ORIGIN      
        1 aaacagtctt gactcaaact atttctacta tttattttga cccgctgctt gattaaactt
       61 tttgcttaaa caataactct cctgccttag tgaggttttt aaatttggaa ctatagccat
      121 cttgtctgga acaactagaa tagcgaacaa gcctatgcct gataaataga caaactaata
      181 ttatgtggag atggtttgtt caggtgtttt aaaatcggca acgtatccat tcttctttgg
      241 atttcaaatc tctaataatt ttggcatggt tgcttaatgt tggtgtccgg cttttcgagg
      301 aaggatcagt ctgagatgtt atgacttaac gcatcacaca gtttaaagat tgaaaaattt
      361 gcgagttacc caactcaatt caagctattg tcgaaattag catgatgcaa ttactaaaat
      421 atcaatatac tcagacagat caatttcttc cagattatac gggtttgttt tccaaatttc
      481 ttttaatgaa tttttatagg tatccgtata ttcaataatg cgggttccct ttttgtttag
      541 atcactttca gtataaaaaa catctctatc cgctctttgt tctatccaca ttctgtaagg
      601 cactccacca ctttgtgatg ctgtgcataa atcagtatat gttgtaatag tttgaaaatt
      661 ctttaaatgg cgttttaatt catggcgata actttcaact cttcccatca tgcaagaatc
      721 tatatctaaa ttttttagtg atatttcttt taactccaaa tcattttcaa gaatatctac
      781 caactcctca gcatcgcgcc ccgcaattaa ttgcttatca atatcaccct gcccgttaat
      841 aagtatggaa tcgcca
//
LOCUS       DACVWI010000418          842 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.420, whole genome shotgun sequence.
ACCESSION   DACVWI010000418 DACVWI010000000
VERSION     DACVWI010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.420"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>842
                     /locus_tag="JBH85_15770"
     CDS             <1..>842
                     /locus_tag="JBH85_15770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947644.1"
                     /translation="QLDELQLKDLKTLRAECKKNDGSIPNLYIHILKQHRSLPTSFLY
                     YQNGALIGFLSIYFFYDDAVEVAVLVSPQYRRQGIAKQLIKEALPLIKSQNYFNLIFS
                     CPSRLNDNWLTSKGFTYLHSEYFMERDDLNPILDYIRPLSFRMATLEDIPILCGLDEV
                     CFPDKNQDSVHRFQQILNEREYEIVIAMLNNHPIGKSHIRWQTKRATLSDIAILPKEQ
                     GKGFGSALIAHCINMILSEGKSRVDLDVETHNKKALNLYIQLGFHIQNACDYWSINVN
                     QLAK"
BASE COUNT          277 a          168 c          140 g          257 t
ORIGIN      
        1 accaattaga tgaacttcaa ttaaaagact taaaaacatt aagagcagag tgtaaaaaaa
       61 atgatggcag catccccaat ctatatatcc atatattgaa acaacaccgc tctcttccta
      121 caagcttcct ttattatcaa aacggggcct tgattggatt cttgagtatt tatttctttt
      181 atgatgatgc tgttgaagtt gctgttctgg ttagtcccca atatcgcaga caagggattg
      241 ccaaacaatt aataaaggaa gcattaccct taattaagtc tcaaaactac tttaacttga
      301 ttttttcatg cccctcacgc ctcaatgata actggttaac ctcaaaagga tttacctacc
      361 tgcatagcga atatttcatg gaacgtgatg atttaaatcc tatactcgat tacatacgtc
      421 cattgtcctt tcgcatggcg actttagagg atattcccat attatgtggc ctcgatgaag
      481 tatgttttcc tgataaaaac caagactcgg ttcaccgatt ccaacaaatt cttaacgaaa
      541 gagaatatga aattgtaata gccatgctca ataatcatcc cataggaaaa tcccatattc
      601 gctggcaaac caaaagggct accttgtctg atattgccat attgcctaaa gaacaaggaa
      661 aaggatttgg ttctgccttg attgctcatt gcatcaatat gattttgagc gaaggcaaat
      721 cccgggtgga ccttgacgtt gaaacccata ataaaaaagc attaaatctg tatattcagc
      781 ttggatttca tattcaaaat gcttgtgatt actggtcaat taatgtgaat caacttgcaa
      841 aa
//
LOCUS       DACVWI010000419          840 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.421, whole genome shotgun sequence.
ACCESSION   DACVWI010000419 DACVWI010000000
VERSION     DACVWI010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.421"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            14..>840
                     /locus_tag="JBH85_15775"
     CDS             14..>840
                     /locus_tag="JBH85_15775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0947645.1"
                     /translation="MSLLLDDIKYFIAASDTLNMTRASEIIGISQPALSYSIKRLENK
                     LGGLLFIRLKNGIQLTKLGEEFKRRSHRLLYEWEQVQNIANPESGFVQGNYTIALHPS
                     VALYTLQYFMPKLQVNYPGLGINFIHGHSREMTEKVISWEADFGIVVNPIQHPDLVII
                     KLSTDEVTVFYANDAQNKLIYDRKLAQSQYILKKIGKKITFNGVINSTSLEVVAKLTA
                     LGLGYGILPTRVTYPYKHLKKVLNAPVFRDEICLVYRPEKHNNPVSKKIIQIIRSSI"
BASE COUNT          272 a          164 c          159 g          245 t
ORIGIN      
        1 aagttggtga gtcatgtctt tgttgttgga tgatataaag tatttcatag cggccagcga
       61 tacgctcaat atgacaagag cttctgaaat tattggaata tctcaacctg cgcttagtta
      121 ttctataaag agattggaga acaaacttgg tggattacta tttatcaggc ttaaaaacgg
      181 aatccagctt acaaaacttg gagaggagtt taagaggcgc tcccaccgtc tattatatga
      241 atgggagcag gtgcaaaaca tagctaaccc tgaatcaggt tttgttcagg gaaactatac
      301 tatagccctt cacccttctg ttgcgcttta tactctccag tactttatgc caaaactgca
      361 agtgaactat cctgggcttg gcattaattt cattcatggt cattcaagag agatgactga
      421 aaaagtgata agttgggaag ccgattttgg tattgttgtg aatcccatac aacaccctga
      481 tctcgttata ataaagctgt ctacggatga agtgacagtc ttttatgcca atgatgcgca
      541 aaataaactg atttatgata gaaaacttgc ccaatcacaa tacatcctta aaaaaattgg
      601 caaaaaaata actttcaatg gcgtaattaa ttctaccagc cttgaagtgg tagccaaact
      661 cacagcctta ggtcttgggt atggcattct acctaccagg gtcacctatc cctataaaca
      721 cctcaaaaaa gtactcaatg cgcctgtgtt tagagatgag atttgtcttg tctaccgacc
      781 tgaaaaacat aataatcctg tcagtaaaaa aatcattcaa attatcagat catccataag
//
LOCUS       DACVWI010000420          814 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.422, whole genome shotgun sequence.
ACCESSION   DACVWI010000420 DACVWI010000000
VERSION     DACVWI010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.422"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>814
                     /locus_tag="JBH85_15780"
     CDS             <1..>814
                     /locus_tag="JBH85_15780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HAU0947646.1"
                     /translation="DGAPSHVRDMLKNEGIVSASRDFLSHGYKELSISKKHTKGMARE
                     HLHLWPRDSFMLLGNPNPDDSITGSLFLANEGKDSFAELNNEEKLHLFFKTQFPDAYA
                     AMPNLVQEFFGNPTGHLSTIQCSPWYYKDECLLIGDAAHGIIPFFGQGMNSAFEDCRI
                     LDELLDEYQDDWSRVNPVFYEQRKVNTDAIAKMSMDNYHEIHSDIRNPKFILQKQIER
                     ELMLRYPEHYVSMHVLVMFTNTPYAKAMAIGELQSGLLEQICFPITDIKELNW"
BASE COUNT          261 a          134 c          174 g          245 t
ORIGIN      
        1 agatggtgcg ccgtctcatg taagggatat gctgaaaaat gaggggatag ttagtgcaag
       61 cagagatttt ttatctcatg gatacaagga gctttcaatt agcaaaaaac atacaaaagg
      121 gatggctaga gagcatttgc atttatggcc acgtgattcg tttatgctat taggtaaccc
      181 taatcctgac gattcaatta caggttcttt gtttttagct aatgaaggga aagacagctt
      241 tgctgaacta aataatgaag aaaaattgca tttatttttt aaaacacagt tcccagatgc
      301 ctatgcagct atgccaaatt tggttcaaga attttttggt aatcctactg gacatttgag
      361 taccatccaa tgctcaccct ggtactataa agacgaatgc ttattaatag gtgatgcggc
      421 acatgggata attccattct ttgggcaagg aatgaatagc gcatttgaag attgccgtat
      481 tcttgatgaa ttactggatg aataccaaga cgactggtcg cgagtgaacc ctgtttttta
      541 tgaacaaaga aaagtgaata ccgatgcgat agcgaaaatg tctatggata attatcatga
      601 aattcattca gacataagaa atccaaaatt tattttacaa aagcagattg aacgggagct
      661 catgttgcga tacccggaac attatgtttc catgcatgtt ttggttatgt ttaccaatac
      721 cccgtatgcc aaggcgatgg caataggcga gttacaatct ggccttttag agcaaatttg
      781 tttcccaata actgatatta aggagttaaa ttgg
//
LOCUS       DACVWI010000421          804 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.423, whole genome shotgun sequence.
ACCESSION   DACVWI010000421 DACVWI010000000
VERSION     DACVWI010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.423"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..>804)
                     /locus_tag="JBH85_15785"
     CDS             complement(<1..>804)
                     /locus_tag="JBH85_15785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HAU0947647.1"
                     /translation="QDSYIGKRVIDMIRATKQVETPPFPRQIQVETTNICNHNCEFCA
                     YTVMERPKRQMDPDLFKRLVKEAYECGAREIGLFSGAEPLTCKYLTEYIDYCRRLGYE
                     YMYLSTNGSVPDKNKFKQILDAGLNSIKFSVNGGNRAIYKQIHGNDHFERVIDNIKFV
                     SQYRCNVKQQVYLAVSFVGMDSSKETFEELKQILDGYVDEILYYDAANQSGQMPHLPL
                     PPYRECHLPFSKLHISREGYLRACCNDYENLLAMEDLNITPMKEAWNSKL"
BASE COUNT          242 a          159 c          116 g          287 t
ORIGIN      
        1 agcttactat tccatgcttc tttcatagga gtaatattta aatcttccat tgccaataaa
       61 ttttcataat cattacaaca agctcttaag tatccctctc tactgatatg taatttactg
      121 aaaggtaaat gacattctcg atacggaggc aacggtaaat gtggcatttg ccctgattga
      181 ttagccgcat cataataaag tatttcatct acatagccat ccaagatctg ctttaattct
      241 tcgaatgttt cttttgatga gtccataccc acaaaagata cagctagata aacttgttgt
      301 ttaacgttac aacgatattg gctgacaaat tttatattat caattactcg ctcaaagtga
      361 tcattcccat gaatttgttt atatatcgct ctatttcccc cattaacaga aaattttatg
      421 gaatttagcc ccgcatcaag tatttgctta aatttattct tatcaggaac tgaaccatta
      481 gtggataaat acatatactc gtatcctaat cgtctgcagt aatcaatata ttcagttaaa
      541 tatttgcatg tgagtggttc tgctccagaa aataaaccaa tttctctagc tccacattca
      601 tatgcttctt ttaccaaccg cttaaataaa tcaggatcca tttgacgctt aggtctttcc
      661 ataactgtat aagcacaaaa ctcacaattg tgattacaaa tgtttgttgt ttctacctgt
      721 atttgtctag ggaatggtgg ggtttccact tgctttgtgg cacgaatcat gtctatgact
      781 cgtttaccta tataactatc ttgt
//
LOCUS       DACVWI010000422          794 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.424, whole genome shotgun sequence.
ACCESSION   DACVWI010000422 DACVWI010000000
VERSION     DACVWI010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.424"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(44..703)
                     /locus_tag="JBH85_15790"
     CDS             complement(44..703)
                     /locus_tag="JBH85_15790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011945223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947648.1"
                     /translation="MLILMMEYTLVCKNKQYHLAKECVLHSRIYNLYHSSTELGDLKA
                     AVVKSSRSSKGNTLYYVDLLTAQGPVNLTGSSSSGRDDKEIAANSINNYISNSLETTF
                     KVSYPASWWMYGLSVFFLLVGALLLTVRGAITDFDRILKTIVIKRKGLFKTEETKLSF
                     SDVDKIIVEESLGSRGTKTYRLAIALKDKPPIPLVTTYDSSFAKKEKIANQLNQFIHE
                     N"
BASE COUNT          239 a          157 c          136 g          262 t
ORIGIN      
        1 taagcccgtt tataaatttt ttttgaagtg ccccattcag caatcagttc tcatggataa
       61 attgatttaa ttggtttgca attttttctt ttttagcaaa agaagaatca tacgttgtta
      121 ccaaaggaat aggtggctta tcttttagag cgatggcaag tctataagtt ttcgtacctc
      181 tgctcccaag tgactcttcg actattattt tatctacatc agaaaacgat aatttggttt
      241 cctctgtctt aaacaatccc tttcttttga ttacaattgt ttttaatatt ctgtcaaaat
      301 cagtaattgc tcctctaacg gtaagcaaca gagcacccac caatagaaaa aaaacggata
      361 agccatacat ccaccacgag gctggataac tcactttaaa agttgtttcc aagctattac
      421 ttatgtagtt attgatgctg ttggcagcaa tttctttatc gtcacgcccg ctggaactgc
      481 tccccgtcag attgactgga ccttgagccg ttaacaaatc cacataataa agcgtatttc
      541 ctttacttga gcgactgctt ttaactacag ctgcttttaa atcacctaac tcggtgctgg
      601 agtgatataa attataaatt ctgctgtgta aaacacattc cttagccaaa tggtattgtt
      661 tgtttttgca aacgagggtg tattccatca ttaaaataag cattgtaaaa agacttgcta
      721 caagaaacaa aaccgcgaac agatatataa gccacatgct gatgatgagg cgcatcttgt
      781 ttgtgctgat agag
//
LOCUS       DACVWI010000423          789 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.425, whole genome shotgun sequence.
ACCESSION   DACVWI010000423 DACVWI010000000
VERSION     DACVWI010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.425"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..728
                     /locus_tag="JBH85_15795"
     CDS             <1..728
                     /locus_tag="JBH85_15795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HAU0947649.1"
                     /translation="YLCSLLLVIPFYRAYALNLTIGTLSYNPPFETQVNDSSKKNEFY
                     GFEIELMDEICERINAKCQYKPLLFEQILAEINSGAINLGIGSINITPERSERFLFSL
                     PYKASYHQFLIPSNSNIKKIDDLKGKTIGIHLGSPTADYLKAYFNNNIQFKYYETFMD
                     LLNGLTDPQVSAIVTNSDQAQYWASSTPDCKLLGDSFPFGVGFGVVARLDQAELIEKI
                     NQALIEIENDGTYLKIYNLFFQP"
BASE COUNT          258 a          140 c          135 g          256 t
ORIGIN      
        1 tttatttatg ttctttgcta ctggttattc ccttttatag agcctatgct cttaatttga
       61 ccatagggac cttatcttat aatcctccgt ttgaaactca agtcaacgat tcttccaaga
      121 aaaatgagtt ttatggtttt gaaattgaac tcatggatga gatttgcgag cgcatcaatg
      181 caaaatgcca atacaagcca ttgttatttg aacaaatttt agctgaaatt aattctggtg
      241 caatcaattt aggcattggt agcattaata ttacgcctga aagaagcgaa cgatttttat
      301 tcagccttcc ctacaaagcc agctatcacc agtttcttat accatctaac tcgaatataa
      361 aaaaaattga cgatctcaaa ggaaagacta taggaattca tttaggttca cctactgccg
      421 attatttaaa agcctacttt aacaataata ttcaatttaa atattacgaa acatttatgg
      481 atttacttaa tgggctgaca gatccgcaag ttagcgcaat agtgactaat agcgatcaag
      541 cgcaatactg ggcatcgagt acaccggact gcaagttatt gggcgacagt tttccttttg
      601 gagtaggatt tggagttgtc gcgagattag atcaagcaga actgattgaa aaaatcaatc
      661 aggcattaat tgagattgaa aatgatggga cttaccttaa aatatataac ctcttctttc
      721 aaccttaagt attatttcga ccgacaaagg actccagtgc ttaataaatc tattgatttt
      781 tgtctataa
//
LOCUS       DACVWI010000424          780 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.426, whole genome shotgun sequence.
ACCESSION   DACVWI010000424 DACVWI010000000
VERSION     DACVWI010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.426"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(46..>780)
                     /locus_tag="JBH85_15800"
     rRNA            complement(46..>780)
                     /locus_tag="JBH85_15800"
                     /product="23S ribosomal RNA"
BASE COUNT          185 a          235 c          165 g          195 t
ORIGIN      
        1 acgatactta tcaggtatac aaatcaatat catattctga agttactcag attatatggt
       61 caagacaatc agccaattag tacaagttag cttcacgcat tactgcgctt ccacaccttg
      121 cctatcaacg tcgtagtctt caacgggctt catgggaaaa ctcatcttga gggaggcttc
      181 ccgcttagat gctttcagcg gttatcccgt ccgaacttag ctacccggcc atgccactgg
      241 cgtgacaacc ggtgcaccag aggttcgtcc actccggtcc tctcgtacta ggagcagctc
      301 ctctcaattt tcctacgccc acggcagata gggaccgaac tgtctcacga cgttctaaac
      361 ccagctcgcg taccacttta aatggcgaac agccataccc ttgggacctg cttcagcccc
      421 aggatgtgat gagccgacat cgaggtgcca aacaccgccg tcgatatgaa ctcttgggcg
      481 gtatcagcct gttatccccg gagtaccttt tatccgttga gcgatggccc ttccattcag
      541 aaccaccgga tcactaagac caactttcgt tcctgctcga gccgtcactc tcgcagtcaa
      601 gcaccctttt gcctttacac tcttggtacg atgtccgacc gtaccgaggg tacctttgtg
      661 ctcctccgtt actctttggg aggagaccgc cccagtcaaa ctacccatca tacactgtcc
      721 tcatccagga ttactggacc aagttagaac ctcaataaca acagggtggt atttcaaggg
//
LOCUS       DACVWI010000425          779 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.427, whole genome shotgun sequence.
ACCESSION   DACVWI010000425 DACVWI010000000
VERSION     DACVWI010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.427"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>779
                     /locus_tag="JBH85_15805"
     CDS             <1..>779
                     /locus_tag="JBH85_15805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HAU0947650.1"
                     /translation="LDLTYNRLPRCSHCSSKKVRKKSSYERKVHHELIGHRRTILRFK
                     AYKLFCNECGRYGNQQFPGIAKYQRSTERLQVQIFHHHTSGISQKELSLQFKQGKATI
                     ERWYHRRYQIEGNELLNTPCPKVLGLDEHFFSRKHGFATTLCDLKKHKVFDIVKGRRE
                     VDLNHYLNSLKGKDRVQVVCMDLSNTYRSLVKKHFPNAKIVADRFHVIRLVQHQCMMT
                     YRELSSSIKNNRGLLALLRTKPDKLTSHKKIKRDTFLAENP"
BASE COUNT          265 a          147 c          143 g          224 t
ORIGIN      
        1 attggattta acctataacc gtttaccacg ctgttctcat tgttcaagca aaaaggttcg
       61 aaagaaatcg agttatgaac gaaaggttca tcatgaatta ataggtcaca gacggactat
      121 tcttcgattc aaagcataca aactgttttg caatgaatgc ggtcgttatg gtaatcaaca
      181 atttcccgga attgctaaat atcaacggtc tacagagcgt ttacaagttc aaatatttca
      241 tcaccatacg agtggtattt cccagaaaga gttatctctt caatttaaac aagggaaagc
      301 aaccattgaa cgttggtatc atagacgcta tcaaatagaa ggaaatgaat tgctcaatac
      361 gccttgtcca aaagtgttag gtcttgatga gcacttcttt agtcgaaaac atggctttgc
      421 aactacctta tgtgacctta aaaagcataa agtgtttgat atcgttaaag gacgaagaga
      481 ggttgattta aatcactacc ttaactcttt aaaagggaaa gaccgtgttc aagtggtctg
      541 tatggattta agtaatacct accgctctct ggtcaaaaag catttcccaa acgctaaaat
      601 agtagctgat aggtttcacg tcattcgatt agtacaacat caatgtatga tgacttatcg
      661 tgagttatcc agctcaatta aaaataaccg aggtctattg gctttgttgc gaaccaaacc
      721 agataaactc acatctcata agaaaataaa gcgagacact ttcctcgctg aaaatccag
//
LOCUS       DACVWI010000426          775 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.428, whole genome shotgun sequence.
ACCESSION   DACVWI010000426 DACVWI010000000
VERSION     DACVWI010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.428"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            25..768
                     /locus_tag="JBH85_15810"
     CDS             25..768
                     /locus_tag="JBH85_15810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAU0947651.1"
                     /translation="MLIEHQIKHYRTLYEWFQSPLGVFVAKEFTDQLDPVKKFLKGET
                     LLQLGDCATNPWLNLLDFKHKWIASPFSSTNRIHLECSLNQLPLNRDTLDCVIVPLTL
                     EPFGNNFSLIDEIDRILKPMGFLIFLCINPWSLWGGAMKWGVLNCYGNRTVKLRSAFN
                     LNRIFLQRGYKQCSLTNFCYIPPVNSQSLIKKLTFFDEIGKMIWPFPSGFYCYITQKY
                     EYISPSLTIEPAIESVKKEYDSPLQPATN"
BASE COUNT          258 a          135 c          133 g          249 t
ORIGIN      
        1 aggtaataaa ttaaaggtca cattttgttg attgaacatc aaataaaaca ttatcgcact
       61 ttatacgaat ggttccaatc acctttagga gtatttgttg ctaaagaatt tacggatcaa
      121 ttagatccag taaaaaagtt cttaaaagga gagacgttac tacaacttgg agattgtgct
      181 acaaatccct ggttaaacct tcttgatttt aaacacaaat ggatagcatc accattctct
      241 tctacaaata gaatccatct tgagtgctcg ctaaatcagt taccactgaa tagagatact
      301 ttggattgtg ttatagtacc tttaacacta gaaccgtttg gaaacaattt tagcttaatt
      361 gatgaaattg accgaatatt gaagcctatg ggatttctca tattcttatg cattaatcct
      421 tggagtttat ggggaggggc tatgaaatgg ggggtgctta attgttatgg taatcgaacg
      481 gtaaaattgc gttcagcttt caatcttaac agaattttcc ttcaaagagg ctacaaacag
      541 tgttctttaa ctaatttttg ctatataccg ccagtaaata gccaatcttt aattaaaaag
      601 ttaacttttt ttgatgaaat tggcaaaatg atatggcctt ttccttctgg cttttattgt
      661 tatatcactc aaaaatatga gtacatcagc ccatcgctca caatcgaacc cgccatagaa
      721 tcggtaaaaa aagagtatga ctcgccctta cagccagcaa caaattagat gaaac
//
LOCUS       DACVWI010000427          764 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.429, whole genome shotgun sequence.
ACCESSION   DACVWI010000427 DACVWI010000000
VERSION     DACVWI010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.429"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            55..170
                     /gene="rrf"
                     /locus_tag="JBH85_15815"
     rRNA            55..170
                     /gene="rrf"
                     /locus_tag="JBH85_15815"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            277..352
                     /locus_tag="JBH85_15820"
     tRNA            277..352
                     /locus_tag="JBH85_15820"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:310..312,aa:Thr,seq:tgt)
     gene            425..509
                     /locus_tag="JBH85_15825"
     tRNA            425..509
                     /locus_tag="JBH85_15825"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:459..461,aa:Tyr,seq:gta)
     gene            530..603
                     /locus_tag="JBH85_15830"
     tRNA            530..603
                     /locus_tag="JBH85_15830"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:562..564,aa:Gly,seq:tcc)
     gene            656..731
                     /locus_tag="JBH85_15835"
     tRNA            656..731
                     /locus_tag="JBH85_15835"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:689..691,aa:Thr,seq:ggt)
BASE COUNT          221 a          157 c          181 g          205 t
ORIGIN      
        1 tttaccaaac ctgtggctta ataaagcaat caaagcctca ggtaaaccag ttttcctggc
       61 gactatagcg atttggaacc acctgatacc atctcgaact cagaagtgaa acatttccgc
      121 gccaatgata gtgtgaggct tcctcatgcg aaagtaggtc atcgccaggg ttttatttta
      181 tagtgtggca tgtaaagccg actaaattaa aataggttag ttgtatacgc ataatataaa
      241 ttaaataagc gctaacctat catatgtaaa gaatatgctg gcgtagctca gttggtagag
      301 caactgactt gtaatcagta ggtcccgggt tcgattcctg gtgccagcac catctaaata
      361 gggctaaacg ttgactaaaa atgttgacaa tccattcatc ttaaaagaca atagcgttct
      421 ttttggaggg gttcccgagc ggtcaaaggg atcagactgt aaatctgacg gctcagcctt
      481 cgaaggttcg aatccttccc cctccaccag ttaagagaga agttagaaag cgggtgtagt
      541 tcaatggtag aacttcagcc ttccaagctg atagcgtggg ttcgattccc atcacccgct
      601 ccaaagtagt gaatagtatt tgcttgttgg tgtgagttag caagctgata tgaaagccca
      661 catagctcag gcggtagagc acttccttgg taaggaagag gtcgttggtt cgagtccagt
      721 tgtgggcacc atgtaatata aattagcaaa cggggagact ttcc
//
LOCUS       DACVWI010000428          761 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.430, whole genome shotgun sequence.
ACCESSION   DACVWI010000428 DACVWI010000000
VERSION     DACVWI010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.430"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            281..>761
                     /locus_tag="JBH85_15840"
     CDS             281..>761
                     /locus_tag="JBH85_15840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947652.1"
                     /translation="MILEFFEVVLIMKSIEYFRNELNELFKSKKNGYKFKQEEKSPEQ
                     NTESDEYVLSFDTLPEEGIDRDNNTFYYTTSVDEICYEIKTSSGCLRTGSFHSNNHNN
                     LEERIFLNAAEKGFVENLEVLKNLATIERLIKELEKKGTEHEIKKYSSELNDEISLYN
                     "
BASE COUNT          288 a          106 c          125 g          242 t
ORIGIN      
        1 attaggcaaa cgctcaatga acctcaaata ctatgttatc tctcaataca taaaaacatg
       61 ctctggctaa cttattagcc actgttttaa tctgagattc cttatacctc gattcaaatg
      121 gtgagtggct cagcgtacat ttagagcaac cgctttatat caaaaagcct acctttcata
      181 gtcttttgtc gcatttacga cgattttcat cattttactt taatcattgg ttcataaaat
      241 aaaaaccaaa tgatcataaa gtgatcaatt tagataagaa ttgatattgg aattttttga
      301 ggttgttttg attatgaaat ctattgaata ttttagaaat gaattaaatg aattatttaa
      361 gagcaaaaaa aatggttata aatttaaaca agaagaaaaa tctccggaac aaaatacaga
      421 gtctgatgag tatgtattgt cttttgacac gcttcctgag gaagggatag atagagataa
      481 taacactttt tattatacga cctctgtaga tgaaatatgt tatgaaatta aaacatcctc
      541 aggatgttta cgtacgggaa gctttcactc caataatcac aataatcttg aggagcggat
      601 ttttcttaat gcagctgaaa aagggtttgt cgaaaattta gaagtcttaa aaaatctagc
      661 aacgatagaa agactcataa aagaattaga aaaaaaaggg accgaacatg aaattaagaa
      721 atatagctct gagttaaatg atgaaattag tttatataat g
//
LOCUS       DACVWI010000429          754 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.431, whole genome shotgun sequence.
ACCESSION   DACVWI010000429 DACVWI010000000
VERSION     DACVWI010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.431"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            326..691
                     /locus_tag="JBH85_15845"
     CDS             326..691
                     /locus_tag="JBH85_15845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HAU0947653.1"
                     /translation="MKRNALIIMLVYLTSTPVFAKNLGKYTYEIACKNCHAPNLAKAI
                     KAPPAFDKKAWKLRFKQAKIEAKNNPSQFESAMDYLLYNVKVGKGLMHHGGLCKEADV
                     PNTDCSDEALIEAINYMRK"
BASE COUNT          273 a          111 c          127 g          243 t
ORIGIN      
        1 acaagaaaaa acatactcta attatataat gctaaatttt tgtcattccc gaccgtgcga
       61 gaatgacaaa aatatgctca aatttataaa gtatatcacg ggcataatcg actaaaatag
      121 gaatgatctt gccttgactt ttagcatatt tgtttcattt ttgttcatat ctcttcagta
      181 ccaataaatt ggttagggta tttctataat taagcatcaa gataatggtc tatacgcttt
      241 aattaaaaag taaaaaacta tttcaattgg caaaatatct catataatcc taagattgct
      301 ttagcaataa taatttgggg atgtgatgaa aaggaatgca ttgattataa tgttagttta
      361 tttaacaagt actccagttt ttgctaaaaa tttaggaaaa tatacttacg aaattgcctg
      421 taaaaattgt catgccccta atttagccaa ggctataaaa gcccctcctg cttttgataa
      481 aaaggcatgg aagctgcgat ttaaacaagc aaaaatagaa gcaaaaaata atccttcaca
      541 atttgaaagc gcaatggatt acctgctgta caatgtcaag gtgggtaaag ggttgatgca
      601 tcatggcggt ttatgtaaag aggcagatgt ccctaatacc gattgctctg atgaggcatt
      661 aattgaagcg attaattaca tgcgaaaata agataaaata tttaaataca taccagcttt
      721 tggctgggtt tcatttgtaa ataaactatt gttt
//
LOCUS       DACVWI010000430          738 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.432, whole genome shotgun sequence.
ACCESSION   DACVWI010000430 DACVWI010000000
VERSION     DACVWI010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.432"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..219)
                     /locus_tag="JBH85_15850"
     CDS             complement(<1..219)
                     /locus_tag="JBH85_15850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HAU0947654.1"
                     /translation="MDSITRIRPFLKWAGGKFQIISKIRSSLPEGSRLIEPFLGSGSV
                     FLNTNYEQFLLADINADLINLFQHLKVEK"
BASE COUNT          217 a          143 c          136 g          242 t
ORIGIN      
        1 tttctcaacc ttcaaatgtt ggaataggtt gattagatcc gcattgatat cagcaagtag
       61 aaattgttcg taattggtgt ttaaaaaaac agatcctgaa cctaaaaatg gttcaattaa
      121 acgacttccc tcgggaagac tcgaacgaat cttacttatt atctgaaact taccaccagc
      181 ccactttaaa aacggcctaa tacgagtaat tgaatccatc tcactcccta agcaattgtt
      241 tttctatcat tacttatccc ttttgtttaa ttttagccta attattaaaa ttaatagttt
      301 atgagccaac tatgccacag atgtccgttg tattcagatg aagcttttac caaagtgtat
      361 ttgttgtatc accaaacgca tagtcgaaca ctgatggagt cactctatat ttggctcagc
      421 aattattttt ttgaccaata agaacctaat agtaaattcg attaggcttt aaaatacagc
      481 ctcgggtacc actggcacat aatgtcggcc tatttattcg actactcttg caaattttga
      541 ctgtggggat tttgtgggga tcagtacagt gctgttatgc actgtactgc aattgtagtg
      601 ggtggcgaca tttaattata taataaattc aatgagttaa ttttaaatta ccgggcttcg
      661 aaccaaggtg tcgggggttc gagtccctcc gagcgcgcca tttgggtctg gtctattccg
      721 aagacatcgg ttacaaat
//
LOCUS       DACVWI010000431          736 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.433, whole genome shotgun sequence.
ACCESSION   DACVWI010000431 DACVWI010000000
VERSION     DACVWI010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.433"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..611
                     /locus_tag="JBH85_15855"
     CDS             <1..611
                     /locus_tag="JBH85_15855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4917 family protein"
                     /protein_id="HAU0947655.1"
                     /translation="NQHLDLFNLHDFDFSSLPHDDGFTRDMNTNDFPKWNNNLSRGPQ
                     DVFYLHGSLFIINAIENFIKINNDSKDGRILEQIDKWLKDDQQPLIVLEGNYKDKAKK
                     IYRHSYLRCCLNALSTLKGDLFLIGFSINDETDKHIIESIQESVIERVYVGYYKELDK
                     DFEKRIKQLSYTNDPSRERELFIFNTNEAIQWKAIKLVTKGK"
BASE COUNT          271 a          111 c          127 g          227 t
ORIGIN      
        1 ctaatcaaca tttagacctg ttcaatttac atgattttga cttttcatca ttaccacatg
       61 acgatggatt tacgcgtgat atgaatacca atgattttcc aaaatggaat aataatcttt
      121 caaggggtcc gcaagatgtt ttttacttac atggaagctt attcattatt aatgctatag
      181 aaaattttat taagattaat aacgatagca aagacgggcg cattttagaa cagatagata
      241 aatggttgaa ggatgaccag caaccattaa ttgttttaga gggtaattat aaagataagg
      301 ctaaaaaaat ttatagacac tcataccttc gatgttgtct aaatgcttta tctactttaa
      361 agggtgatct atttttaatc ggcttttcaa taaacgatga aacggacaaa cacatcattg
      421 aaagcattca agaatctgtg attgaaaggg tttatgttgg gtactataaa gaattagata
      481 aagattttga aaaaagaata aaacaattat cgtatacaaa tgacccaagc agagaaagag
      541 aactatttat tttcaataca aatgaagcaa tacaatggaa agctattaag ctagttacta
      601 aaggtaaata gttatctaca actgtcccat atgtgtccca taatccggat ggtgattttg
      661 aaaacaacct ataaccattg gtatacctgg tgccgctgcg cggaatcgaa ccgcgaacct
      721 tttgaatatt aatcag
//
LOCUS       DACVWI010000432          732 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.434, whole genome shotgun sequence.
ACCESSION   DACVWI010000432 DACVWI010000000
VERSION     DACVWI010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.434"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(99..>732)
                     /locus_tag="JBH85_15860"
     CDS             complement(99..>732)
                     /locus_tag="JBH85_15860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HAU0947656.1"
                     /translation="YNARNISEFWQRWHITLSLWIRDYLYIPLGGNRGRLYQTVNNLL
                     ITMFIAGLWHGASWNYAIWGIYHGCLLAVYHVFRFYYIKRNLQTENQLMKIGSIIMTY
                     SLVVIGWVIFRSTSFEQAFTILGKMYDIPGFVQEFAMNQRASAYTDSLFYLVGMFALC
                     FIGPTFKSIETKILSAIQPFWIKKWLYSLSIFTVLIFMFSPVKPFIYFVF"
BASE COUNT          291 a          134 c          113 g          194 t
ORIGIN      
        1 caagctaaaa gtgctgcaaa atggggtaac ttagatggcc aagtaaaggt tcgtatctta
       61 aaattaattg atgatgttat ccaaaaacca aagcatattt aaaaaacaaa ataaataaac
      121 ggtttcacag gggaaaacat aaaaattaac accgtaaaaa ttgaaagcga ataaagccat
      181 tttttaatcc agaatggctg tatagctgac aagattttcg tttcaattga tttaaaagtt
      241 ggccctataa aacacagggc gaacattccc acgagataaa acaatgaatc ggtataagct
      301 gaagcacgtt gattcattgc aaattcctgc acaaaaccag gaatatcata catcttaccg
      361 agaatagtaa atgcctgttc aaatgaagta gatcgaaata ttacccagcc tatgactact
      421 aatgaataag tcattataat tgagccaatc ttcatcaatt gattttcagt ttgtaaattt
      481 cttttaatat aataaaaccg gaaaacatga taaacggcta acaaacaacc atggtatatg
      541 ccccaaatcg cataattcca ggaagcgcca tgccataaac cagcaataaa catagtaatt
      601 agtaaattat tcaccgtttg atacaaacga cctcgattac ctcctagagg aatatataaa
      661 taatctctaa tccataatga caaagtgata tgccaacgct gccagaattc actgatattg
      721 cgcgcattat aa
//
LOCUS       DACVWI010000433          713 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.435, whole genome shotgun sequence.
ACCESSION   DACVWI010000433 DACVWI010000000
VERSION     DACVWI010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.435"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            79..>713
                     /locus_tag="JBH85_15865"
     CDS             79..>713
                     /locus_tag="JBH85_15865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010653822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947657.1"
                     /translation="MAPKLNWDKAIDKAIKRYGLRVEPQLISYFSKAGVSYPPKEIAL
                     LAFKSERKVELWAKNPNQEWTHIHDYPLTGFSGRLGPKLRENDKQIPEGIYKLVNFNP
                     FSSMHLSMMINYPNSFDRQKGYMDGRKELGNNIFIHGKNLSVGCLAVGDLAIDQLFIL
                     ARRVGLKNIQVIIAPNDLRYQKPSTSTFAQPRWLPELYKQITESLKPFKKT"
BASE COUNT          233 a          133 c          133 g          214 t
ORIGIN      
        1 gtaacttacc agtatagtgc gtctatgaaa cgattttttc cgatattgtt tattctttac
       61 tgctgtaatt tatttgcaat ggcacctaag cttaactggg ataaagcgat tgacaaagca
      121 ataaaacgtt atggactaag agtagaaccg caattaattt cttatttttc taaagctggg
      181 gttagctacc ctcctaaaga aattgccttg cttgccttca agtcagagcg taaagtcgag
      241 ttatgggcaa aaaatccaaa ccaggaatgg acccatattc atgattaccc attaactggc
      301 tttagcgggc gtttaggacc caaattacgt gagaatgata agcagatccc cgaagggatc
      361 tataaattag taaattttaa tccttttagc agcatgcact tatccatgat gattaactac
      421 ccaaatagtt tcgatcggca aaaaggttat atggacggta ggaaagagtt aggaaataat
      481 atttttattc atggaaaaaa tttatctgta ggatgtttgg ctgtcggtga ccttgccatt
      541 gatcaactgt ttatcttggc aagaagagtt ggcctcaaaa atattcaggt tattattgcc
      601 cctaatgact tacgatatca aaagccatca acatctacat ttgcccaacc cagatggttg
      661 cccgagcttt ataagcaaat aacagaatca ctcaaaccct ttaaaaagac taa
//
LOCUS       DACVWI010000434          713 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.436, whole genome shotgun sequence.
ACCESSION   DACVWI010000434 DACVWI010000000
VERSION     DACVWI010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.436"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            33..>713
                     /locus_tag="JBH85_15870"
     CDS             33..>713
                     /locus_tag="JBH85_15870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015961688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAU0947658.1"
                     /translation="MIPEKLLTYTKTIFEYSHSTVYIKDKNFHYQYMNNRGLKQLQLQ
                     EKDIMGMPDKALPFGKYAHFYNSHDYSAMEEIIYFQLDDCITKNGEKIFALSHKLPLK
                     DEDGKTHGVIGFTKFMNLHQLMNNLNSKNTFLTPNLKINVNVDDWLKTTINLSRREME
                     VLYYFLQGKSIKLIAPLLHITERTVIFHLNNIKSKWGCYNKEDIYTKSFEKGLKNLTI
                     IWDLLAMRS"
BASE COUNT          267 a          108 c          107 g          231 t
ORIGIN      
        1 ttcaaccaaa aagattgtgt cacaatagct ttatgatccc tgaaaaactc ttgacttata
       61 caaaaacaat ttttgaatac tcccatagta ccgtatacat caaagataag aattttcatt
      121 accagtatat gaataatagg ggactcaaac aattgcaatt acaagaaaaa gatattatgg
      181 gtatgcctga taaagcactt ccctttggga aatatgcgca tttttataat agtcatgatt
      241 actcggcaat ggaagaaatt atttactttc aattagatga ttgtattact aaaaacggtg
      301 aaaaaatatt tgccttatct cacaaattac cgcttaaaga tgaagatgga aaaactcatg
      361 gtgtcattgg ctttacgaaa tttatgaatc tccatcaact gatgaataac cttaattcaa
      421 aaaatacctt tttaacacct aatcttaaaa tcaatgttaa tgttgatgat tggctaaaaa
      481 caacgattaa tttgtctcgg agagaaatgg aggttttgta ctatttttta caaggaaaat
      541 cgatcaagct tattgcacca ttgcttcata ttactgaaag aaccgttatt tttcatctta
      601 ataatataaa aagcaaatgg ggttgttaca ataaagaaga tatatatact aaatcctttg
      661 aaaaaggctt gaaaaatctt acaattatct gggatttgtt agcgatgcgt tcc
//
LOCUS       DACVWI010000435          711 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.437, whole genome shotgun sequence.
ACCESSION   DACVWI010000435 DACVWI010000000
VERSION     DACVWI010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.437"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>711
                     /locus_tag="JBH85_15875"
     CDS             <1..>711
                     /locus_tag="JBH85_15875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947659.1"
                     /translation="AYRVLKLHHYDLLIFGQEFPGSINSLLIKLCNKRNTPTLIIPFA
                     LGTTKEIVESLYDKDIFDVSSSITNYLASLLYPNWINFYKGKKMLRLTGKQIFFLELM
                     GLAPEHPWLPNNSFVTKIAVESEKMFSYYQSMKFPVHQLSLTGSLSDDILVEATTNGQ
                     EIKKKICQKMNLDPEKPILLCAWPTDQFGSRFVSMEFKNYEQLCRAWAKCLKEIKREG
                     KYSVIIRPHPVTNKEILGK"
BASE COUNT          245 a          112 c          120 g          234 t
ORIGIN      
        1 gcttatagag ttcttaagtt gcaccactac gatcttttga tttttggtca agagtttcct
       61 ggctcgataa attccttgct aattaaacta tgtaataaac gaaatactcc tacattaatc
      121 ataccttttg cgctaggtac aactaaggaa atagtggaga gcttatatga caaggatatt
      181 tttgatgtat cttcaagtat aactaactat cttgcatctt tactctatcc taattggatt
      241 aatttttata aaggaaaaaa gatgctcagg ttaactggta aacaaatttt ctttttagaa
      301 ctgatggggt tagctccaga acatccttgg cttcccaata attcctttgt taccaaaatt
      361 gctgttgaaa gcgaaaaaat gttttcatat taccaatcaa tgaaattccc tgttcatcaa
      421 ttatctctga caggaagttt atctgatgat attttggttg aggcaacaac aaacggtcag
      481 gaaattaaga aaaaaatatg tcaaaaaatg aaccttgatc cggaaaaacc tattttattg
      541 tgtgcttggc caacagatca atttggttca cgatttgttt ccatggaatt caaaaattac
      601 gaacagcttt gtagagcatg ggcaaaatgt ttgaaagaaa ttaaaaggga aggaaaatat
      661 tctgtaatta ttagacctca cccggttact aataaagaaa ttttaggtaa a
//
LOCUS       DACVWI010000436          694 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.438, whole genome shotgun sequence.
ACCESSION   DACVWI010000436 DACVWI010000000
VERSION     DACVWI010000436.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.438"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..>694)
                     /locus_tag="JBH85_15880"
     CDS             complement(<1..>694)
                     /locus_tag="JBH85_15880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014843562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HAU0947660.1"
                     /translation="NSPHSFATGIYSEGNLCSIESNTISLGYATGNGENVGIALYGGI
                     DCRIKNNHIIFARWPMWGRNFGIWIKSSRSGHPVIENNFIRGAHYALGPFGLFSGNIA
                     VNLSCAFFVQRKNKANQFFDLGKNVAVMQSSVNEGMGGNSICPDNRVYAAYRFIVNPG
                     AFSAYSAAMAWGEGGEETLIETYAWFLVASYYKHELALNIVNNPFANGYSENVVSKAK
                     IIADKIFISGILV"
BASE COUNT          240 a          148 c           94 g          212 t
ORIGIN      
        1 accaaaatac cactaataaa aatcttatca gctattattt ttgcttttga gactacattt
       61 tctgaataac cattagcgaa tggattgttt actatgttta aagcaagctc atgtttgtag
      121 taagaagcaa ctaaaaacca tgcataagtt tcaattaatg tttcttctcc cccttctccc
      181 caagccattg cggcagaata agctgaaaat gctccaggat ttactataaa tcgatatgca
      241 gcataaactc tgttatcagg acaaatactg ttacccccca ttccttcgtt tacagaagat
      301 tgcataactg caacattctt acccaaatca aaaaattgat ttgctttatt ttttctttga
      361 acaaaaaaag cacatgacaa gttaacagct atatttccac taaatagtcc gaagggacca
      421 agagcataat gtgcacccct gataaagtta ttttcaataa caggatgacc acttctggac
      481 gacttgatcc aaattccaaa atttcgtccc cacattggcc aacgcgcaaa aataatatga
      541 ttattcttta tacgacaatc tattccacca tataaagcaa ttccaacatt ttctccatta
      601 cctgtagcat atcctagact tatggtatta gactcaattg aacagagatt accttcagaa
      661 taaatccctg tagcaaaaga atgtggtgaa ttag
//
LOCUS       DACVWI010000437          692 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.439, whole genome shotgun sequence.
ACCESSION   DACVWI010000437 DACVWI010000000
VERSION     DACVWI010000437.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.439"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            26..>692
                     /locus_tag="JBH85_15885"
     CDS             26..>692
                     /locus_tag="JBH85_15885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019350368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAU0947661.1"
                     /translation="MDIQNNVTQNHQPKRAISDVADFLGISMQAVHKQLKNKNINCEK
                     IGNKSFLTFESARELFNFKFKRKKIAVQIVKGGTGKTTTINNIASCANTYGARVLLID
                     ADPQGNLTDANGIDAEEYPVLIDLLKDGASIQESIVTVSQGLDLIPSRIENVILDNEI
                     VNGRYPLEKLYNNLLSKVENYYDFILIDCPPTMGQAVTAASLYADIILAPLNPDKFSA
                     KGLK"
BASE COUNT          267 a          114 c          120 g          191 t
ORIGIN      
        1 catcaaccac ataatgagat tcaatatgga tatacaaaac aatgtcactc aaaatcacca
       61 acccaaaaga gcaatatctg atgttgcaga ttttctcggc atctcaatgc aagccgtcca
      121 taaacaatta aaaaataaaa atataaattg cgaaaaaata ggtaacaaat cttttttaac
      181 atttgaatca gctagagagt tatttaattt taagttcaag cgaaaaaaaa tcgccgttca
      241 aattgttaaa ggtggaactg gaaaaactac aacaatcaat aatatagcta gttgtgccaa
      301 tacttatgga gcaagagtgc tattgattga tgcagatcca cagggtaatt taacagacgc
      361 aaatgggatt gacgcggaag aatatcctgt attaatagat ctattgaaag atggagcatc
      421 aattcaagaa agcatagtaa cagtttcaca aggattagat ctaataccaa gccgcattga
      481 gaatgtaatt ctcgataatg aaattgtcaa cggaaggtat ccattagaga agctttataa
      541 taatttatta agtaaagtcg agaactatta tgactttata ttgatagatt gcccgccaac
      601 tatgggacaa gccgtaactg ccgctagtct gtacgctgat attattctag cccctttaaa
      661 tcctgataaa tttagcgcta aagggttaaa aa
//
LOCUS       DACVWI010000438          690 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.440, whole genome shotgun sequence.
ACCESSION   DACVWI010000438 DACVWI010000000
VERSION     DACVWI010000438.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.440"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..530)
                     /locus_tag="JBH85_15890"
     CDS             complement(<1..530)
                     /locus_tag="JBH85_15890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2745 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947662.1"
                     /translation="MLVGSIWFIKDRLQTLMLVQDIRRFLDELRESKTILPCDKRLSA
                     ILQEHFSHRENHEELTSNDIQFVLQCFSERWIADSECDYLLYPSQANQVWIKLAHEIE
                     PFTDKNYLQILLPHVTNQFDFNNLTPLTETVRLENFYLGYDGKTLYRKRGLCEHLLDN
                     QFELSTCRTLKTKQCEV"
BASE COUNT          244 a          120 c          108 g          218 t
ORIGIN      
        1 acttcacatt gtttagtctt tagtgttcta caagtggata actcaaattg attatcaagc
       61 aaatgttcac ataatcctct ttttctatat aaagtttttc catcatatcc aagataaaaa
      121 ttttccaatc gaacggtttc agtcaatgga gttaaattat taaaatcaaa ctgattggtt
      181 acgtggggca gcaaaatttg caaataattt ttatctgtga atggttctat ctcatgagcc
      241 aacttgatcc aaacctggtt tgcctgagaa ggataaagca gataatcaca ctctgagtca
      301 gcaatccagc gttcgctaaa acattgcaaa acaaattgaa tatcattgga ggttaactct
      361 tcatgatttt ctctatgcga gaaatgttct tgtaaaatag cagataatct tttatcacag
      421 ggaagaatag ttttcgattc cctcaactca tcaagaaacc tacgaatgtc ttgtactaac
      481 attaaagtct gcagcctatc cttaataaac caaattgaac caacaagcat tctctatcaa
      541 tactattgaa ctggaatcac ctaaacaatg tcatgcttgc taataaatag gaattatttt
      601 gatatcagat tgtactttgg tcaatagagg atttaattaa tagaaaaaaa catgtgaaaa
      661 taaaagaagc ggcttgagag ccgctataag
//
LOCUS       DACVWI010000439          671 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.441, whole genome shotgun sequence.
ACCESSION   DACVWI010000439 DACVWI010000000
VERSION     DACVWI010000439.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.441"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>671
                     /locus_tag="JBH85_15895"
     CDS             <1..>671
                     /locus_tag="JBH85_15895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAU0947663.1"
                     /translation="IFDDPLFIRKPHGLQPTQKVLDLAPKIKKFLNYSNDIFEEDTFN
                     PGNDNLFLKTASVGTGEYFILPRLCAHLAKNAPKFVLKISSLSEYLSLEYLLMSELDF
                     AIGPGFVETGNNIIRELLFEEEAVCIMHKSHPLANQELTQDMYLQAEHVDIQFSYMGN
                     ENILYKALQGYHQRNIKVIVPNIISALEVVYHTNFITTVPRTLAVTFKDRYQIELHPF
                     PFPKKT"
BASE COUNT          229 a          119 c          116 g          207 t
ORIGIN      
        1 atattcgatg accctttgtt tattaggaaa ccgcacgggc ttcaaccaac acaaaaggta
       61 cttgatctgg cccccaagat taaaaaattt ttaaattact ccaatgatat ttttgaagaa
      121 gatactttca atccaggaaa tgacaattta tttttaaaga ctgcatcagt aggtacaggg
      181 gaatatttta ttttacccag gttatgtgct catttggcta aaaatgctcc gaaatttgta
      241 ttaaagattt cttcactgtc agagtacttg agtctcgagt atttattaat gtccgaatta
      301 gactttgcaa taggaccagg ctttgttgaa acggggaata acatcatcag agaattattg
      361 tttgaagagg aggctgtgtg catcatgcat aaatctcatc ctctcgcaaa tcaggaatta
      421 actcaagata tgtacttgca agctgaacat gttgacatac aatttagtta catgggaaat
      481 gaaaatatac tgtataaagc attacaagga tatcatcaaa gaaatatcaa agtgatagtg
      541 cccaatatca ttagcgcatt ggaagtggtt taccatacga atttcattac aactgtaccg
      601 agaactctag ctgttacttt caaagacaga tatcaaattg aactacaccc ttttcctttc
      661 cctaaaaaga c
//
LOCUS       DACVWI010000440          656 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.442, whole genome shotgun sequence.
ACCESSION   DACVWI010000440 DACVWI010000000
VERSION     DACVWI010000440.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.442"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..390
                     /locus_tag="JBH85_15900"
     CDS             <1..390
                     /locus_tag="JBH85_15900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HAU0947664.1"
                     /translation="TKIHMAVDAFGFPISFQLICGEVHDAKAAPDLISSLPIATYTIA
                     DKGYDSEEIREQIKQKSSIPIIPRKKNSKTGNAEVDRGLYKYRHLVENIFARLKQFRA
                     IATRYDKLKRNYASTLAMACSYIWLPM"
     gene            451..>656
                     /locus_tag="JBH85_15905"
     CDS             451..>656
                     /locus_tag="JBH85_15905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HAU0947665.1"
                     /translation="MKSFYAYIMASKRNGTLYVGSTSDLIKRVWEHKNKVIPGFSARY
                     NVHILVYYEVHETYIEAARREKRF"
BASE COUNT          222 a          119 c          127 g          188 t
ORIGIN      
        1 acaaagatcc atatggctgt ggatgccttt ggttttccaa tttcatttca gttgatttgc
       61 ggtgaagtac atgatgctaa agctgcaccg gacttaatca gctctttacc gatagcaact
      121 tatactattg cggacaaagg ttatgacagc gaagaaattc gagaacaaat taagcaaaaa
      181 tcttccattc caattatccc cagaaagaaa aactctaaaa caggtaatgc tgaagttgat
      241 cggggtttat ataaatatcg tcacctagtt gaaaatatat ttgccagact taaacagttt
      301 cgtgctattg caacaagata cgataagtta aaacggaatt atgcttcaac gctagcaatg
      361 gcatgctcat atatttggct tcctatgtaa cccacataat ttgaatgata ttatcgaacc
      421 gagtccaaaa ctcgataaca aggaagaaag atgaaatcat tttatgccta tattatggca
      481 agtaagcgca atggcaccct atatgttggc tcaacatctg atttaattaa gcgggtctgg
      541 gagcacaaaa ataaagtgat tccagggttt tcagcacggt ataatgtaca tatcttggtc
      601 tattatgaag tgcatgaaac gtacatagaa gctgctcgtc gtgagaaacg tttcaa
//
LOCUS       DACVWI010000441          654 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.443, whole genome shotgun sequence.
ACCESSION   DACVWI010000441 DACVWI010000000
VERSION     DACVWI010000441.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.443"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            63..380
                     /locus_tag="JBH85_15910"
     CDS             63..380
                     /locus_tag="JBH85_15910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010653665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HAU0947666.1"
                     /translation="MANFGRKMQGQEDVLQGFKLTTIEIKNSAVVATSGDNFHPIISY
                     TGNPSDKVPGIVFTISKEELAQADKYEVSEYKRVNVKLNSGVNAWVYINAQDLYGNNQ
                     AKS"
BASE COUNT          255 a          104 c          113 g          182 t
ORIGIN      
        1 tgagcaaaac gtacacagaa aagttatttt catacgggac cttacgctat gaaaaagtac
       61 aaattgctaa ttttggtaga aaaatgcaag gccaagaaga tgtattgcaa ggattcaaat
      121 taaccacgat tgaaattaaa aattcagccg ttgttgcgac aagtggcgat aattttcatc
      181 ccattatttc gtatacgggc aatccctcag acaaagttcc aggtatcgta tttactatca
      241 gcaaagaaga attagcacaa gctgataaat atgaagtctc tgaatataaa cgtgtgaatg
      301 tcaaattgaa ctcaggggtg aatgcatggg tttatatcaa tgctcaagat ctctatggta
      361 ataaccaagc aaaaagctaa ctagcaatag atattagttc agaacaaata tatagagact
      421 caaatgggta attctattat taatttgtag gaaatgcttt attgccaagt tataaaacga
      481 atgtaatgcc catacgttat acaatttaaa aactaaaaaa tacacatcaa taatcaacga
      541 actcatcaag gtaaaatgtg ttgtggaagt actccaattc aaactttgat agagggtaaa
      601 caaatacctc attataccta agaagaatag ggttcattac atgccaatta agtc
//
LOCUS       DACVWI010000442          633 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.444, whole genome shotgun sequence.
ACCESSION   DACVWI010000442 DACVWI010000000
VERSION     DACVWI010000442.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.444"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>633
                     /locus_tag="JBH85_15915"
     CDS             <1..>633
                     /locus_tag="JBH85_15915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1083 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947667.1"
                     /translation="TINKNEFTDDFLRKYFELGFGSLSKHDIDLLVYYLVKEHSDLFN
                     GKTNYEISSLLTITERKLQSIQMESYLRYENNSISKNLEELSVKITKGEIKPEVEGDK
                     IRVLIDSPVLRRDLEYSITSLGHIVDYSFNKNILSLRLSNFFEVFGNLNIENGKELKT
                     QVIDFFREQNKWDKEILIEIENKSWWIKQFNTLQAAVKKEAAALIFHSIIS"
BASE COUNT          244 a           80 c          107 g          202 t
ORIGIN      
        1 acgattaata agaatgaatt taccgacgat ttcctgcgta aatattttga actaggtttt
       61 ggttctttat ctaaacacga tattgattta ctcgtttatt atcttgtaaa agaacattca
      121 gacttattta atggaaaaac aaattatgaa atttcttctc ttctgacgat aacagaaagg
      181 aaattgcaaa gcattcaaat ggagtcctac ctgagatatg aaaataattc catatcaaaa
      241 aacctagaag aactaagtgt aaaaattaca aagggagaaa ttaaaccaga agttgaaggg
      301 gacaaaattc gagttttaat agattctcca gttttaagga gagatctaga gtattcaata
      361 acttctttag gccacatagt tgattactct tttaacaaga atatcctcag tttaagatta
      421 agcaactttt ttgaagtgtt tggtaatttg aatatagaaa atggaaagga attaaaaacg
      481 caagtaattg acttttttcg tgaacaaaat aaatgggata aggagatact aattgagatt
      541 gaaaataagt catggtggat taagcaattt aataccttac aagctgctgt caaaaaggaa
      601 gcagctgcat taatttttca tagtataatt tct
//
LOCUS       DACVWI010000443          628 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.445, whole genome shotgun sequence.
ACCESSION   DACVWI010000443 DACVWI010000000
VERSION     DACVWI010000443.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.445"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            74..>628
                     /locus_tag="JBH85_15920"
     CDS             74..>628
                     /locus_tag="JBH85_15920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg2844 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947668.1"
                     /translation="MAETPKPKSQTPTPKPKPKPTDEQTVEPAPQQSTLGKVGSVIGG
                     LAKKGLGKLADNIGKQFGSNAPQPGAENKPAEGQKKDDDKKDPQMEMIERYMKLVEQW
                     QGGINKPFYWVGGKISAGASFLVDKAVEGIKNKLAESEQPKPNPNSSTQQSNSSSSSS
                     SSSTTPTPTSSSSSGSQSSSPPTTS"
BASE COUNT          221 a          140 c          140 g          127 t
ORIGIN      
        1 ttggaaaagt aacctcggac aaaatcttga tgaggtacta taatttagat atcaacagat
       61 atggtaaatt aacatggcag aaactccaaa acccaaatca cagacaccaa caccgaagcc
      121 gaaaccaaaa ccaacggatg agcagactgt tgagccagct cctcaacaaa gtacgcttgg
      181 gaaagtaggt agtgtaatcg gaggacttgc taaaaaaggg ttaggcaaat tagccgataa
      241 tatcggcaag caatttggct caaatgctcc tcagcctggt gctgaaaata agcctgcgga
      301 aggacaaaag aaggatgatg acaaaaaaga tccgcaaatg gaaatgattg aaaggtatat
      361 gaagctggtc gagcaatggc aaggcggtat caacaagcct ttttactggg tgggtggcaa
      421 aatatcagct ggtgccagtt ttctggttga taaggcagtg gaagggatta aaaataaact
      481 ggctgaatca gagcaaccca aaccaaatcc caactcctca acgcaacaat ccaattccag
      541 ttcgagttcc agttctagta gtactacccc cacacctact tcgtcaagca gcagcggcag
      601 ccagtcttca tcaccgccta caacaagc
//
LOCUS       DACVWI010000444          627 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.446, whole genome shotgun sequence.
ACCESSION   DACVWI010000444 DACVWI010000000
VERSION     DACVWI010000444.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.446"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            62..574
                     /locus_tag="JBH85_15925"
     CDS             62..574
                     /locus_tag="JBH85_15925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947669.1"
                     /translation="MSVINGKKIITIILGIACLFCSIHPVNSAPDFSNKPHVREKNKN
                     LLGVFVGGNHAQNDEAFTYGFEYHRVLSMPFGFSAVIEHTPVNVEHNNQVELIGLGTL
                     NVFRNLTFGIGPGIRYEKDEPNRMVGRLGIGYIIHFPPDIEITPNIDLDFIEGGEKEL
                     IFGITFGKQF"
BASE COUNT          191 a          113 c          119 g          204 t
ORIGIN      
        1 ctttaaatat tagtcatttt gcgatttaat aaagaaatag ataaccctgt cttgagaact
       61 catgtcggta ataaatggta agaaaataat aactatcatt ctggggattg catgcctttt
      121 ttgttcaata cacccggtaa attctgctcc ggatttctca aataaaccgc acgtgaggga
      181 aaaaaacaaa aatctccttg gtgtttttgt aggtggaaat catgctcaaa acgatgaagc
      241 gtttacctat ggatttgagt accaccgagt cctttccatg ccttttggtt ttagtgcggt
      301 tattgaacat acccccgtta atgtggaaca taataatcaa gtagaactga taggtcttgg
      361 tacattaaac gtattcagaa acctgacttt tggcataggc cctggaatta gatatgaaaa
      421 agatgaaccc aaccgcatgg ttggtcgatt ggggattgga tatatcatac attttcctcc
      481 ggatatagaa atcaccccga atatagacct tgattttatt gaagggggtg aaaaagagct
      541 gatctttggt atcacttttg gcaaacaatt ttaaatagtt cttttcccct atatgaattg
      601 tctctcccgc tttctctctt tttaaaa
//
LOCUS       DACVWI010000445          574 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.447, whole genome shotgun sequence.
ACCESSION   DACVWI010000445 DACVWI010000000
VERSION     DACVWI010000445.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.447"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..544)
                     /locus_tag="JBH85_15930"
     CDS             complement(<1..544)
                     /locus_tag="JBH85_15930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HAU0947670.1"
                     /translation="MHIETSLSDESLIELAQKGNGLAFDKLFERYQGKIRQMIYFYTH
                     DWTNVNDLTQEVLIKVFRHLPYFNERSQFSTWLYKITQNTIKNYFRTNNLYADSEMQY
                     MDEQFSTPHNSPESDIMGLEFEKQIEAAMSCLSEELRLCYGLHIFDGQTYQDIAKEMH
                     CPIGTVRSRIFRARKQLMDIV"
BASE COUNT          178 a          103 c           87 g          206 t
ORIGIN      
        1 ttacaatatc catcagctgt tttcgagctc taaatatacg tgagcgtaca gttccgatgg
       61 ggcaatgcat ttcttttgca atatcctgat aagtttgtcc atcaaatatg tgcagcccat
      121 aacataatcg taactcttca gataaacatg acattgctgc ttctatttgt ttctcaaact
      181 ctaatcccat tatgtctgac tctggagaat tatgtggtgt agaaaattgt tcatccatat
      241 actgcatttc tgaatcagca tataaattat tggtacgaaa ataattttta atagtatttt
      301 gagtaatttt atatagccag gttgaaaact gactgcgttc attaaaataa ggtaaatgcc
      361 taaatacttt gataagaact tcctgagtta aatcattgac atttgtccag tcatgcgtgt
      421 aaaaataaat catttgtcta attttgccct gataacgctc aaacagttta tcaaaagcta
      481 aaccgttgcc tttttgagct aattcaatta gagattcatc acttaaagag gtctcaatat
      541 gcatagcttc ctcattattc ctttgcttgt tatt
//
LOCUS       DACVWI010000446          572 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.448, whole genome shotgun sequence.
ACCESSION   DACVWI010000446 DACVWI010000000
VERSION     DACVWI010000446.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.448"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(296..>572)
                     /locus_tag="JBH85_15935"
     CDS             complement(296..>572)
                     /locus_tag="JBH85_15935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HAU0947671.1"
                     /translation="NLKTGTLHSVESYAGAVKLPKGISQESIRINERILDNDGYPLMA
                     PKLRRQNANQLRMFFSRESNTLLNGSYDLADRSNRDLTEVANIISYR"
BASE COUNT          180 a          103 c           98 g          191 t
ORIGIN      
        1 gtacattttg tctattaatt tgttatatgg ttttggataa tgacataaaa tcaggttaga
       61 tgatttaacg gctatgccta ataagtaatc ttagctttac attgaagcac atgaacaagt
      121 cacccgattt ggagccatac aactaaccat aaaatcatca ggatgaatca ttcaaagctt
      181 gttgtttatg ctatgggact ttaagaataa tcagcaagta accaaacaca ttcagtgaaa
      241 aactggtttg tcaggtattt ccctgattat tattctggca aatacctgat tatatttagc
      301 gataagagat tatattggca acttccgtca gatccctgtt tgaacgatca gcaagatcat
      361 atgatccatt taaaagagta ttactttctc tggaaaaaaa cattcttaac tgatttgcat
      421 tttgacgtct taacttaggt gccatcaaag ggtagccgtc attatccaga atccgctcat
      481 ttattcttat tgactcctga cttatgcctt taggcaattt gactgcgccg gcataggatt
      541 ctacagaatg caaggtacct gtctttaaat ta
//
LOCUS       DACVWI010000447          566 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.449, whole genome shotgun sequence.
ACCESSION   DACVWI010000447 DACVWI010000000
VERSION     DACVWI010000447.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.449"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..478
                     /locus_tag="JBH85_15940"
     CDS             <1..478
                     /locus_tag="JBH85_15940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947672.1"
                     /translation="LCIDKISKSEWGCRWNIFNLHDCKARISLYEKLGIKNGIDKFQE
                     TVKDLENRLNKNKYFLSLPDKQQKEFLKGKKPLMVSQDDLVVKMGLNKNTFRGLYEFL
                     SSQAHSFPLSFYKMKDDGRGRGVHCEVEENHTKVVIGYCIVFLEQAEKDMNVLFAQ"
BASE COUNT          217 a           63 c          109 g          177 t
ORIGIN      
        1 cttatgtatt gataaaataa gtaaaagtga atggggttgt cgttggaata tttttaattt
       61 acatgattgt aaagcaagaa taagtcttta tgagaaatta ggtataaaaa atggcattga
      121 taaatttcaa gaaactgtaa aagatttgga aaatcgttta aataaaaaca aatatttcct
      181 ctcattgcct gataagcagc aaaaagaatt tttgaaagga aaaaagccct taatggtaag
      241 ccaggatgat cttgtggtta aaatgggttt gaataaaaat acatttagag gattatatga
      301 gtttttatca tctcaagctc actcatttcc gttaagtttc tataagatga aagatgatgg
      361 tcgtggaagg ggagtacact gtgaggttga ggaaaaccat actaaagtag tcataggtta
      421 ctgcattgtc tttctagaac aagcagaaaa agatatgaac gttttatttg ctcagtaatt
      481 gaattattga tcccaaaact catataaggt aggcaggaaa ttacataata tggacccagt
      541 attagaatat tatcaaagaa taatct
//
LOCUS       DACVWI010000448          558 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.450, whole genome shotgun sequence.
ACCESSION   DACVWI010000448 DACVWI010000000
VERSION     DACVWI010000448.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.450"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..500
                     /locus_tag="JBH85_15945"
     CDS             <1..500
                     /locus_tag="JBH85_15945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphocholine transferase"
                     /protein_id="HAU0947673.1"
                     /translation="FHLCVKLMKAGAHTNISSPSKFLKNSDANSILERPFKFKNDLKK
                     ELDDNPLIAMAQINDLYVQIKNNRIRTPTGYAPKEGVSFFKGKSSDAKAHDEVLSVLK
                     ELYDSKLTEMLGNLPGEGLEEIKRSQKFFDGELKLLIKNQDISRKVDKKSIQEAVGTS
                     LKLKW"
BASE COUNT          201 a           96 c           94 g          167 t
ORIGIN      
        1 attttcattt atgtgtcaaa ctgatgaaag caggtgccca taccaatata tcttctccat
       61 caaaatttct taaaaactcc gatgccaatt ctattttgga acgtcctttt aaatttaaga
      121 acgatttaaa aaaagagctc gatgataatc cgctaattgc tatggcacaa attaatgatt
      181 tgtacgtcca aatcaaaaat aacaggatta ggactcctac aggttatgcc ccgaaagaag
      241 gagtatcctt ttttaaagga aaatcaagcg atgccaaagc acatgatgag gttttgtctg
      301 ttttaaagga actctacgat agtaaactca cagagatgct cggtaatctt cctggtgaag
      361 gattagaaga aatcaaaaga agccagaaat tttttgacgg cgaactaaaa ttattaatta
      421 aaaaccagga catttcgagg aaagtcgata aaaagtctat tcaggaagca gttggtacat
      481 ccttgaaatt aaaatggtaa gaactgctat ttcaattcat ttttattttc tatttcacca
      541 tccaataatt gcaactcg
//
LOCUS       DACVWI010000449          538 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.451, whole genome shotgun sequence.
ACCESSION   DACVWI010000449 DACVWI010000000
VERSION     DACVWI010000449.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.451"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            9..179
                     /locus_tag="JBH85_15950"
     CDS             9..179
                     /locus_tag="JBH85_15950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_819615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947674.1"
                     /translation="MNKAYVSPYDKFLYEFDATHKKSASQLQEIKKHQRIFKMRDDKD
                     YKIDQSEIWEEF"
     gene            244..>538
                     /locus_tag="JBH85_15955"
     CDS             244..>538
                     /locus_tag="JBH85_15955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947675.1"
                     /translation="MTGLYCISKDKDEKSIHSALNNPALLNKAMQLKSIGKVALSQNQ
                     LTYLKIHDEWIHELFPLLQNEQIRKPDYFGNESIGAHISIIYPEENTTINPKEL"
BASE COUNT          205 a           89 c           86 g          158 t
ORIGIN      
        1 cagatgatat aaataaagct tatgtcagtc cttacgataa gtttttatat gaatttgatg
       61 cgacacataa aaaatcagca tcgcaattgc aagaaattaa aaagcatcag cgcatcttca
      121 aaatgagaga cgataaagac tacaagatcg atcaaagtga aatttgggaa gagttttaag
      181 agtttctcac ctataactat cttggtaagc tgctagcatg ttaatcaaga cctagtagca
      241 gaaatgacag gtctttattg tattagtaaa gataaagatg aaaaatccat ccattctgca
      301 ctaaataatc ctgctttatt aaataaggct atgcagctta aatcaattgg gaaagtagcc
      361 ctttctcaaa atcaattaac ttatcttaag attcatgatg aatggatcca cgaactattt
      421 ccactcttac aaaatgagca gatccgtaaa cctgattatt ttggtaatga atccatcggt
      481 gctcatatta gtattatcta tccagaagaa aatacaacaa ttaatccaaa agagttag
//
LOCUS       DACVWI010000450          535 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.452, whole genome shotgun sequence.
ACCESSION   DACVWI010000450 DACVWI010000000
VERSION     DACVWI010000450.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.452"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            1..474
                     /locus_tag="JBH85_15960"
     CDS             1..474
                     /locus_tag="JBH85_15960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HAU0947676.1"
                     /translation="MILDRTDKKILEILQANCEINNQELADLVALSPSSCLRRVKLLI
                     DNGYIKKQVALLEPEKVGLKLTVIVLVGLNNHQPEVMNQFEKTIQLFPEVIQCYLITG
                     QSADYLLKIIVPDLNAYQAFLLGKLTRINGVASVHSSFILRNVSDTTALPLDHLD"
BASE COUNT          166 a          104 c           96 g          169 t
ORIGIN      
        1 atgatactcg atcgtactga taaaaaaata cttgaaatac tgcaagcaaa ttgcgaaatc
       61 aataaccagg aattggccga ccttgtggcc ttgtctcctt cgtcctgttt gcgtcgagtc
      121 aaattattaa tagataatgg ttatatcaag aaacaggttg ccctgcttga gccagaaaaa
      181 gtagggttaa aattgactgt tattgtttta gtagggttaa acaatcacca gcctgaggtt
      241 atgaatcaat ttgaaaaaac catacaactt tttccggaag tcattcaatg ctacttgatt
      301 acaggccaat ctgctgatta tttattgaag ataattgtgc ctgatttaaa cgcttatcaa
      361 gcttttttat taggcaaatt aacacgcatc aatggcgttg caagtgttca ctccagcttt
      421 atattacgca atgtttctga cacgaccgcc ctaccccttg atcatttgga ttagggcact
      481 gctcttcgaa tattaaatta ttcaataaat actaactcga aagtacctgg ctctg
//
LOCUS       DACVWI010000451          519 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.453, whole genome shotgun sequence.
ACCESSION   DACVWI010000451 DACVWI010000000
VERSION     DACVWI010000451.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.453"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..>519)
                     /locus_tag="JBH85_15965"
     CDS             complement(<1..>519)
                     /locus_tag="JBH85_15965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947677.1"
                     /translation="TSSIVFAQLPKEVIDSCHDGVADNRDSVIYMYLPNDLWRLAPRS
                     ITPVKNDVEHIELGGSYDYEEINGSEERYQFDFFMHHFSIEDNQYFVRSDSRTKLSDA
                     INHSNHSIAQPGNINNLMIVGKITFNKKEYLCISGPLYQNGTFAAVAEYYIVENAFDY
                     DKKIQLHYYFFD"
BASE COUNT          165 a           91 c           82 g          181 t
ORIGIN      
        1 tgtcaaaaaa ataataatgt aattgtattt ttttatcata atcaaaagca ttttcaacaa
       61 tatagtactc tgcaactgca gcgaatgtgc cattttgata taaggggcca gatatacata
      121 ggtactcttt tttgttgaat gtaatttttc ctacaatcat gagattattt atatttcctg
      181 gctgggcaat agagtggttc gaatgattaa tcgcatcgga taattttgtc ctactgtcac
      241 ttcttacaaa atattggtta tcttctatac taaaatggtg cataaagaaa tcaaattgat
      301 accgttcttc actgccatta atttcttcat aatcataact tccacctagc tctatatgct
      361 caacatcatt tttaaccgga gttattgaac gaggtgccaa gcgccataga tcattaggaa
      421 gatacatgta gataacacta tctctattgt cagctactcc atcatgacat gaatctatga
      481 cttctttggg tagttgggca aaaactattg aactagtga
//
LOCUS       DACVWI010000452          514 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.454, whole genome shotgun sequence.
ACCESSION   DACVWI010000452 DACVWI010000000
VERSION     DACVWI010000452.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.454"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>514
                     /locus_tag="JBH85_15970"
     CDS             <1..>514
                     /locus_tag="JBH85_15970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947678.1"
                     /translation="KIILDTSILRSLSLSKSAEVEALNKLIKYEHVEVYLPYIIYNEY
                     ITHLRDEFNQSVIILNREVRKLNKYLYKSRSIKDEFLKAVDQINFDEINEFNYWIDKY
                     QIQVATNLDLDPTVVLTDYFNGKLPYRSLKCREDIPDSFIHHEIMKYSEQTKEEIIFI
                     CHDKKLIKSFE"
BASE COUNT          199 a           64 c           81 g          170 t
ORIGIN      
        1 aaagataatc ctagatacaa gcatacttag gtcattgtct ttatctaaaa gtgcagaggt
       61 tgaagcatta aataaattga ttaaatatga acatgttgag gtttatttac cgtatattat
      121 ttacaatgaa tatattactc atttaaggga tgaatttaat caatcggtaa taatacttaa
      181 cagggaggtt aggaagttaa acaaatattt gtataaatct cgcagcatta aggatgaatt
      241 tttaaaagcc gttgatcaga taaattttga tgagattaac gagtttaatt attggattga
      301 caaataccaa atccaagttg caactaattt agacttggat ccaacagtag tcttaaccga
      361 ttattttaat ggaaaattac catatcgatc acttaaatgt agagaggata tacccgactc
      421 ttttatacat catgaaataa tgaaatattc cgagcaaact aaagaagaga ttatctttat
      481 ttgtcatgat aaaaaattaa tcaagtcctt tgaa
//
LOCUS       DACVWI010000453          511 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.455, whole genome shotgun sequence.
ACCESSION   DACVWI010000453 DACVWI010000000
VERSION     DACVWI010000453.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.455"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            63..>511
                     /locus_tag="JBH85_15975"
     CDS             63..>511
                     /locus_tag="JBH85_15975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAU0947679.1"
                     /translation="MEKSNFRLNFLSQILFFTLGAFLFCNGYAAGNTFIFNPNTLTWK
                     AISSNGKVIRTGRGSGGKHYCSDVRRSCKTPSGVFRVISKGGPACRSSRYPLGKGGAP
                     MPYCMFFSKLYAIHGSPDVPNYNASHGCVRVKPHDARWLSQNFIKIGT"
BASE COUNT          160 a           82 c          107 g          162 t
ORIGIN      
        1 atttgaattg ttcaaaaatt aaactaaaat aataaagtga cggaaaaaaa ataggttaaa
       61 tcatggaaaa gtccaatttt cgcttaaatt ttttgtctca aattttattc ttcactttag
      121 gagcatttct attctgtaat gggtacgcgg cgggtaatac ctttattttt aatcctaata
      181 cattaacctg gaaagctatc agctctaatg gcaaggtgat acgtacaggg cgaggatcag
      241 gtggaaaaca ctattgttct gatgttcgca gatcatgcaa aacaccatct ggtgttttta
      301 gagtgattag caaaggtggc ccagcatgcc gatccagtcg ttatccgctg ggtaaaggtg
      361 gagcacctat gccatattgt atgtttttta gtaaattgta tgcaattcat ggttctccgg
      421 atgtgccaaa ttataacgca agtcatggct gtgtcagagt gaagcctcat gatgcaagat
      481 ggttaagtca aaattttatt aaaattggaa c
//
LOCUS       DACVWI010000454          500 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.456, whole genome shotgun sequence.
ACCESSION   DACVWI010000454 DACVWI010000000
VERSION     DACVWI010000454.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.456"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..489
                     /locus_tag="JBH85_15980"
     CDS             <1..489
                     /locus_tag="JBH85_15980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HAU0947680.1"
                     /translation="DCHSMIGMESKAKFVHIKFHDNEILNFGNIKIKAMHTPGHTPDS
                     YCFVMEDRIFTGDTLLINATGRTDFQNGSASAQYDSLFNKLLKLPGFMRIYPGHDYNQ
                     KQYSTIDDEKKNNPRLQVKSRQEYVEMMGNLNLSFPKNMHFAVPANLNNGLTEQEVNA
                     LV"
BASE COUNT          180 a           73 c           92 g          155 t
ORIGIN      
        1 gattgtcatt ctatgatagg aatggaaagc aaagcgaaat ttgtgcacat caaatttcat
       61 gataatgaga ttttaaattt tggaaatatt aaaataaagg ctatgcacac gccagggcat
      121 actccagatt cctattgttt tgtaatggaa gatagaatat ttactggcga cactttatta
      181 atcaatgcta caggacgtac tgattttcaa aatggtagcg ccagtgcgca atatgacagt
      241 ctttttaaca aacttttaaa attaccggga ttcatgagaa tatatcctgg ccatgattat
      301 aatcaaaaac aatatagtac aattgatgat gagaaaaaaa ataatcccag attgcaggta
      361 aaatccaggc aagagtatgt tgaaatgatg ggtaatctga atttgtcttt tcctaaaaac
      421 atgcattttg cagttcccgc caacttgaat aatggattaa ctgagcagga agttaatgct
      481 ttagtttaaa gattattatc
//
LOCUS       DACVWI010000455          486 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.457, whole genome shotgun sequence.
ACCESSION   DACVWI010000455 DACVWI010000000
VERSION     DACVWI010000455.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.457"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>486
                     /locus_tag="JBH85_15985"
     CDS             <1..>486
                     /locus_tag="JBH85_15985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HAU0947681.1"
                     /translation="YSLNLTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRRLHAT
                     CTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKI
                     STFDDLHGKKIGVRKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE
                     AA"
BASE COUNT          165 a           80 c           84 g          157 t
ORIGIN      
        1 ttattcatta aatttaacaa ttggtacttc aaaatttaat ccgccttttg aagtttggtc
       61 tggtaacaac agttcattgt atggctttga tattgacctt atgcaagaaa tatgtagaag
      121 attacatgcg acctgtactt ttgaagccta tatattcgat gatttatttc ccgcgttaaa
      181 aaaccgcgaa gtcgatctgg ttattgcctc aatgattatt acagatgaaa gaaagaaaca
      241 ctttattttt agtcttccct atatggaaag taactcacaa tatataacta ccgtcgattc
      301 taaaatcagc acatttgatg atttgcacgg aaaaaaaatt ggagtaagaa aaggaactcc
      361 ttacgcaagg caagttttgt cagaaaaccg caacaatcag gtaatttttt atgagctcat
      421 acaagatatg cttcttggct taagcaataa tcaagttgat gccagtttaa tggattatga
      481 agcagc
//
LOCUS       DACVWI010000456          483 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.458, whole genome shotgun sequence.
ACCESSION   DACVWI010000456 DACVWI010000000
VERSION     DACVWI010000456.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.458"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..456)
                     /locus_tag="JBH85_15990"
     CDS             complement(<1..456)
                     /locus_tag="JBH85_15990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947682.1"
                     /translation="MDFLINDKELAALCGMPHLQQLAYLRGIRPYMDVKTGLVGIKRG
                     ISYQSIAEQLYIEPHQGIKSGSYSRMQIRRALSALGRAGLITPQSEGLKLILRCELAT
                     MGYSVQNKLDLNQTQQLDPAKNQQRLINTGLSKTDPLKAGIDKSPKADTP"
BASE COUNT          114 a           98 c          104 g          167 t
ORIGIN      
        1 aggtgtgtcg gcttttggag atttatctat gccggctttt agtgggtctg tctttgataa
       61 gccagtattt ataaggcgtt gctgattttt agctgggtct agttgctgtg tctggtttag
      121 gtctagttta ttttggacgg aataacccat tgtagctaat tcgcatctta aaattaattt
      181 taaaccttcg gattgtggtg taataagccc tgctcgcccc aaagcagata aggcacggcg
      241 tatttgcatg cgtgaatagc tcccgctttt aatgccttga tgcggctcaa tataaagttg
      301 ctctgctatc gattgatagc tgattccgcg ctttatgccg actaatcctg ttttgacatc
      361 catatatggc cttatccctc ttaggtaagc cagttgctga aggtgtggca tcccacataa
      421 agcagcaagt tctttgtcat taattaaaaa atccactatt cactctcaat ccgtgtacaa
      481 att
//
LOCUS       DACVWI010000457          481 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.459, whole genome shotgun sequence.
ACCESSION   DACVWI010000457 DACVWI010000000
VERSION     DACVWI010000457.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.459"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            34..>481
                     /locus_tag="JBH85_15995"
     CDS             34..>481
                     /locus_tag="JBH85_15995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947683.1"
                     /translation="MDEIKKDDELSQWLSTYGTITAERILGRYNISLPQDEILEAINI
                     PSSFYRHLLQIPLKNVLNGIVIQQASDYHVYAQKLLIDYLLSGESSKEPDSQGAGTRE
                     SLEDERQRLVQLGDEFHKLELEQDNLIASSQASLMKISIDWNTKLET"
BASE COUNT          181 a           80 c           95 g          125 t
ORIGIN      
        1 cacatacttt aaagaattta aattggataa aaaatggacg agatcaaaaa agatgatgaa
       61 ttgagtcaat ggctttctac ctatggaaca atcaccgctg aacgtatatt aggtagatac
      121 aacatatcac tgccacaaga tgaaatacta gaagcgatta acattccatc tagtttctat
      181 agacatttgt tacagattcc cctaaaaaac gtacttaatg gaattgtaat tcaacaggca
      241 agtgattacc atgtctatgc acagaaactg ttaattgatt atttgttatc tggtgaaagc
      301 agcaaagagc ctgactcaca gggggccgga actcgcgaat cacttgaaga tgaaagacag
      361 agattggttc agttagggga tgagtttcat aaattggaat tagagcagga taatctcatt
      421 gcatcaagcc aagccagctt aatgaaaata agcattgact ggaatacaaa actggaaaca
      481 a
//
LOCUS       DACVWI010000458          458 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.460, whole genome shotgun sequence.
ACCESSION   DACVWI010000458 DACVWI010000000
VERSION     DACVWI010000458.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.460"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>458
                     /gene="pieB"
                     /locus_tag="JBH85_16000"
     CDS             <1..>458
                     /gene="pieB"
                     /locus_tag="JBH85_16000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector PieB/LirD"
                     /protein_id="HAU0947684.1"
                     /translation="ISETISSLIPEYTKENTYRLTSLTYELPLNPSLALQIIAVFDNY
                     LTQTKEARFSKKSIKQSIDEHGNLKICLMEFFDDSHYIAMWDEEMGINPLEIRKRKFS
                     DKHPFLQGFINASNIPEIYLPVIDNLKKYYAFCEIEHLTISECLNNTKLN"
BASE COUNT          180 a           83 c           59 g          136 t
ORIGIN      
        1 tatatctgaa acaatatcat cactgatccc tgagtacaca aaagaaaata cctatcgact
       61 aacatcgtta acctacgaat tacccctgaa cccatcatta gcgctacaaa tcattgcagt
      121 atttgataat tatcttacac aaacaaaaga agctcgtttt tcaaaaaaat caatcaaaca
      181 gagcattgat gaacatggaa acttaaaaat atgcctgatg gaattttttg acgactcaca
      241 ctatattgct atgtgggatg aagagatggg cattaatcca ttagaaataa gaaaaagaaa
      301 attttcagat aagcatcctt ttttacaagg attcatcaat gcttctaata ttcctgaaat
      361 ctaccttcct gtaatagata acctaaaaaa atattatgcg ttttgtgaaa ttgaacattt
      421 aactatttct gagtgcctaa acaatacaaa attaaatc
//
LOCUS       DACVWI010000459          454 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.461, whole genome shotgun sequence.
ACCESSION   DACVWI010000459 DACVWI010000000
VERSION     DACVWI010000459.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.461"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            57..>454
                     /locus_tag="JBH85_16005"
     CDS             57..>454
                     /locus_tag="JBH85_16005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947685.1"
                     /translation="MVENLCYYLFIRQNKSNIGLYFSTLRYHLIRMKVGIMDDLLDQI
                     ETGIQNNLYYLSLFVSLAIPDICGALESVNGVASGSKYASWFDKNVVIPNGYYLNGMD
                     CYYFRCSMLHQGKTTHKNSNFTRILFVEPSS"
BASE COUNT          144 a           64 c           84 g          162 t
ORIGIN      
        1 tttgctctac gtcttgctgc tctaatttaa tcaggaaata aaaaaagcat tggtttgtgg
       61 tggaaaatct ctgctactac ctttttataa ggcagaataa atcgaatatt ggtctatact
      121 tttctacatt aagatatcat ttgataagaa tgaaagtagg aattatggat gatttgctag
      181 atcaaattga aacaggaatt caaaataact tgtattatct atccttattt gtgagtcttg
      241 ctattcctga tatttgtgga gcacttgaat cagtaaatgg cgtggctagc ggttctaaat
      301 atgcaagttg gttcgataaa aatgttgtga ttccgaatgg ctattatttg aatggaatgg
      361 attgctatta ttttagatgt tctatgcttc accaaggaaa aacaactcat aaaaatagta
      421 atttcacccg tattcttttc gtagagccaa gttc
//
LOCUS       DACVWI010000460          438 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.462, whole genome shotgun sequence.
ACCESSION   DACVWI010000460 DACVWI010000000
VERSION     DACVWI010000460.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.462"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..423
                     /locus_tag="JBH85_16010"
     CDS             <1..423
                     /locus_tag="JBH85_16010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR family transcriptional regulator"
                     /protein_id="HAU0947686.1"
                     /translation="RARRMHTKDNFLTLPRECIIQMNELISSGNSNKKDNLKEIILRS
                     SQQKMAELIKDNVFDYNQLPFSFLAAKELTHREKEMIYLYFNDFNLSRIASIFEVSKR
                     TVERHFESIKKKLDCESTGQIIPALIKYDCSLKKGIKT"
BASE COUNT          166 a           73 c           73 g          126 t
ORIGIN      
        1 agagctagga gaatgcatac aaaagataat tttttaacct tacccagaga atgcataatc
       61 cagatgaatg aactgattag ctcaggaaat tcaaataaga aagataatct taaagaaatt
      121 attctgagat cctcgcagca aaaaatggcg gaactcatca aagataatgt atttgattat
      181 aatcaacttc cttttagttt tttagcagcc aaagaactga ctcatcgaga aaaggaaatg
      241 atctatttat actttaatga ttttaattta tcgcgtattg cttctatttt tgaagtttcc
      301 aaacgcacgg tcgagagaca ctttgagagt ataaaaaaga aacttgactg cgagagcaca
      361 ggccaaataa tccctgcgtt gattaaatat gattgttctt taaaaaaagg catcaagaca
      421 taacccctac tgactcaa
//
LOCUS       DACVWI010000461          436 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.463, whole genome shotgun sequence.
ACCESSION   DACVWI010000461 DACVWI010000000
VERSION     DACVWI010000461.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.463"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            15..>436
                     /locus_tag="JBH85_16015"
     CDS             15..>436
                     /locus_tag="JBH85_16015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011946503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAU0947687.1"
                     /translation="MSSKNTHSTLLNKQEINWILEQRITRLTDNKEVLIYPMGAERYL
                     SSALSGHEEERYNLHSEIKEKNVLIIPGYGNSAFLFAQAGAKSILVYDKDPVTIAWVK
                     AFKKYYHYREYNNNGKPYPSIGELLTALTKWYPPLLKLP"
BASE COUNT          159 a           79 c           72 g          126 t
ORIGIN      
        1 tgaaaggcct attcatgtca agtaaaaata cccatagcac tttactcaat aagcaagaaa
       61 taaactggat tttagagcag cgtattacaa gactgactga caataaagaa gttttaattt
      121 atccaatggg agcagaacgc tatttgtcat ctgctttatc tggtcatgaa gaagaaaggt
      181 ataatttaca cagtgaaatc aaagaaaaaa atgtcctaat aatccctgga tatggtaata
      241 gcgctttttt atttgctcaa gcaggggcca aatctattct tgtttatgat aaagatcccg
      301 tgactattgc atgggtaaaa gcatttaaaa aatattacca ttacagagaa tacaataata
      361 atgggaaacc ctatccttca ataggtgaac ttctgacagc tctcaccaaa tggtatcctc
      421 ctctacttaa actacc
//
LOCUS       DACVWI010000462          435 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.464, whole genome shotgun sequence.
ACCESSION   DACVWI010000462 DACVWI010000000
VERSION     DACVWI010000462.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.464"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            47..346
                     /locus_tag="JBH85_16020"
     CDS             47..346
                     /locus_tag="JBH85_16020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_094913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947688.1"
                     /translation="MIIKWSTIMKEKHFAYKITLSSTGLVCTHSEIEENRMIDLLKEI
                     KNDDSQAIFWIFKQFDEQPKEQLGIIDCTQNRIYYHYSGEVEKIDEAIEKLSKKI"
BASE COUNT          175 a           58 c           69 g          133 t
ORIGIN      
        1 ttaaaaagat ttttaacaaa aagattggga tttctcataa gtcctgatga taattaaatg
       61 gagtactatc atgaaagaaa aacattttgc ctataaaatt actctttctt caacagggct
      121 ggtttgtacc cattctgaaa ttgaagaaaa cagaatgatt gatctgttaa aagaaataaa
      181 aaacgatgat tcccaagcta ttttctggat ctttaaacaa tttgatgagc agcctaaaga
      241 acaactaggg attatcgatt gtacccaaaa tcgtatttat taccattatt caggcgaagt
      301 tgaaaaaatt gatgaggcta ttgaaaaact aagtaaaaaa atataagcca aaaagtgccc
      361 aaagaaatat cacatttcat tgtgtggagg tatatttcaa atcctggatt gaaaatatat
      421 tttatgaaat caaat
//
LOCUS       DACVWI010000463          434 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.465, whole genome shotgun sequence.
ACCESSION   DACVWI010000463 DACVWI010000000
VERSION     DACVWI010000463.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.465"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            63..434
                     /locus_tag="JBH85_16025"
                     /pseudo
     CDS             63..434
                     /locus_tag="JBH85_16025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011947272.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          157 a           64 c           83 g          130 t
ORIGIN      
        1 ggcatcaata aaactatatt ttggaagtac actaaagagg cgcttgaagc aggagaaacg
       61 taatgtattt aagggaaaaa tttgttgtaa ttttaatttg tatattcata agctctattg
      121 tattggctat gccccagtag aatttttaca atcatgtaaa aacagtaagc cagccaatga
      181 ttctataacc atgaccttac tggatgggtt tggcagcact aaagataatg aaccaggttg
      241 tagaaatcat ttcgattctg aaattaatgg tcagctctat ggagcggtag tgtgtgatga
      301 ccaaccttat ttaataattg caaataaaaa ataagtacag caacagctaa aaactattcg
      361 atgaatccaa gtgttaaacc agatatccca attcttcgtt tttctgagtg gtggagaata
      421 aataaaagcg ataa
//
LOCUS       DACVWI010000464          417 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.466, whole genome shotgun sequence.
ACCESSION   DACVWI010000464 DACVWI010000000
VERSION     DACVWI010000464.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.466"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..379)
                     /locus_tag="JBH85_16030"
     CDS             complement(<1..379)
                     /locus_tag="JBH85_16030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lpg1661 family Dot/Icm T4SS effector"
                     /protein_id="HAU0947689.1"
                     /translation="MNTVPLKPQRLLSLDVFRGMTIVLMIFVNGQAAIDPYPIFEHVD
                     WNGCTLADLVFPFFLFIVGLTSVISLKNQMERKAKTSLYSAIIERSVVLFLLGLFLNV
                     FPHPIEFDSIRIYGILQRIAVCYL"
BASE COUNT          161 a           83 c           68 g          105 t
ORIGIN      
        1 ttaaataaca aacagcgatt cgctgcagaa tcccatatat ccttatgcta tcaaattcaa
       61 taggatgggg aaaaacattc aaaaataatc ctaaaagaaa caaaacaaca cttctctcta
      121 tgatggcaga atataatgag gtttttgctt ttcgttccat ttggtttttc aggcttataa
      181 cactcgttaa gccaacgata aacaagaaaa atgggaaaac caaatccgcc aaagtacaac
      241 cattccagtc cacatgctca aaaatcggat agggatcaat agctgcctga ccattaacga
      301 aaatcatcaa tacaatagtc atcccgcgaa atacatcaag ggataaaagg cgttggggtt
      361 ttaaaggaac agtattcatg cgctatttaa aatggattta taaaaaactg agcccca
//
LOCUS       DACVWI010000465          414 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.467, whole genome shotgun sequence.
ACCESSION   DACVWI010000465 DACVWI010000000
VERSION     DACVWI010000465.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.467"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..200)
                     /locus_tag="JBH85_16035"
     CDS             complement(<1..200)
                     /locus_tag="JBH85_16035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAU0947690.1"
                     /translation="MSKTVNGVVKWFNEIKGFGFIEQEGGPDVFAHFKEISSSGFKTL
                     TEGQRVQFIVTQGAKGLQAQNIT"
BASE COUNT          136 a           83 c           70 g          125 t
ORIGIN      
        1 gttatatttt gtgcttgaag accttttgct ccttgcgtca caatgaattg tactcgctga
       61 ccttcagtca gggttttaaa gccagaactt gaaatttctt taaagtgagc aaatacatcc
      121 gggccgcctt cttgctcaat aaaaccaaat cctttgatct cgttaaacca tttaacgact
      181 ccatttactg ttttagacat aagtatcctt aagtatttat tatagtgcct gtataggcga
      241 atttagccgg aaaccggtca agaattaaaa actaccgaac gagggattaa atgaataaaa
      301 cgacgatttg gaaagtataa aaatagacat tttctagcta ggatcagaat actattcttt
      361 aaggctacaa gtcaaggctc taccccaaat aagatattgg ctctacccca acaa
//
LOCUS       DACVWI010000466          405 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.468, whole genome shotgun sequence.
ACCESSION   DACVWI010000466 DACVWI010000000
VERSION     DACVWI010000466.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.468"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>405
                     /locus_tag="JBH85_16040"
     CDS             <1..>405
                     /locus_tag="JBH85_16040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947691.1"
                     /translation="AMELAKLKEKCLKMEEDEFNYCFNKGNTSERSISTIIARLKNAV
                     DLKEEFFKTDKDYVVWIENVISARKNVPIELAKIKEQLLKMKEGEFDYYVKDLSTNEY
                     NGGISINRRLFRDLGLKGEFFKTQKDYNAWIE"
BASE COUNT          160 a           49 c           86 g          110 t
ORIGIN      
        1 cagccatgga attagcaaag cttaaagaaa aatgtctgaa gatggaagaa gatgagttta
       61 attattgttt taacaaagga aatacttcag aacgcagcat tagtacaatc attgcgcggc
      121 tcaagaatgc agtagatctt aaggaagagt ttttcaagac agacaaagat tatgttgtct
      181 ggatagaaaa cgtaatttct gcaagaaaaa atgttcccat agagttagca aagataaaag
      241 aacaattatt gaaaatgaaa gaaggtgagt ttgattatta tgttaaagat ttaagtacca
      301 atgaatacaa tggcggcata tctattaacc gacgactttt tcgagattta ggtcttaagg
      361 gggagttttt caagacacaa aaagattata acgcatggat agaag
//
LOCUS       DACVWI010000467          386 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.469, whole genome shotgun sequence.
ACCESSION   DACVWI010000467 DACVWI010000000
VERSION     DACVWI010000467.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.469"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            157..321
                     /locus_tag="JBH85_16045"
                     /pseudo
     CDS             157..321
                     /locus_tag="JBH85_16045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015043254.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
BASE COUNT          137 a           69 c           67 g          113 t
ORIGIN      
        1 aaatgctttt tattataaat aaaagcataa gcatgaagaa ttcttcccag aataaaatat
       61 aaggccaaga tgaatagaat tacccaatgg gcttgatttg cttcagtgca aagcatcaat
      121 atcaatgcaa cccgtattta ggcgaacgct tacgtatatc tgcctgtatt taaaacttat
      181 atgggacacg actcttttca cgaaagggcc tattaccttc gtatgacgat cgatgtgttt
      241 cccgatataa agttgaaaat ggagactagg tacccaggaa taatccctga tttgcaaggc
      301 gataacgatg aaaccaactg attttgcaga atattttact gaatttctta ctgtttattt
      361 acccaaacaa aaaaatgtaa gcaaga
//
LOCUS       DACVWI010000468          385 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.470, whole genome shotgun sequence.
ACCESSION   DACVWI010000468 DACVWI010000000
VERSION     DACVWI010000468.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.470"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            7..>385
                     /locus_tag="JBH85_16050"
     CDS             7..>385
                     /locus_tag="JBH85_16050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAU0947692.1"
                     /translation="MILNIRRMKDSDIENVYSIETNVHIAPWSKDILRDCVLVGYDCR
                     VLEINNGDSSILAGYIISRISNNSCHILNLCIAKPLQSKGLGRKLLQTVLYSLSKYTQ
                     TESVILEVRPSNSAALHLYETMGF"
BASE COUNT          139 a           57 c           71 g          118 t
ORIGIN      
        1 taatgaatga tattaaacat tcgtagaatg aaagatagtg atattgaaaa tgtctattct
       61 atcgaaacaa atgttcatat tgccccctgg agtaaagaca tactaagaga ttgcgtgctt
      121 gttggttatg attgcagagt tctggaaatc aacaatggag atagctcgat ccttgctgga
      181 tatatcatat ccagaataag caataatagt tgtcatatat taaatttgtg cattgccaaa
      241 ccattacaat caaaaggttt ggggagaaaa ctattacaaa cagttcttta ttctttatca
      301 aaatatactc aaacggaatc agttatatta gaggtaaggc caagtaacag cgctgcatta
      361 catctttacg aaacaatggg atttg
//
LOCUS       DACVWI010000469          385 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.471, whole genome shotgun sequence.
ACCESSION   DACVWI010000469 DACVWI010000000
VERSION     DACVWI010000469.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.471"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>385
                     /locus_tag="JBH85_16055"
     CDS             <1..>385
                     /locus_tag="JBH85_16055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_096166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent ubiquitin ligase"
                     /protein_id="HAU0947693.1"
                     /translation="FLMQNDAWYFSRVNAIAQNRDKGSNFKEVLFTTLMTPLTNKSLI
                     DTSHVPAPKKLYRGLNLPQEFTNKLINQSNAIIANTENTLFTDLSAEAFKQIKLNDFS
                     QMSGKTCASTTKNMKLLTDIWGSNV"
BASE COUNT          134 a           91 c           56 g          104 t
ORIGIN      
        1 ttttcctcat gcaaaatgac gcctggtact ttagccgagt caatgccatc gcacaaaacc
       61 gggataaagg ctccaatttc aaagaagtgc tgtttaccac cttaatgacg cctttgacta
      121 ataaatcatt aatagataca tcccacgtcc cagctccgaa aaaactgtat cgtggattaa
      181 atctgccaca agaatttacc aataaattaa tcaatcaatc caatgccatt attgccaata
      241 cagaaaatac gctttttact gatctctctg ctgaagcctt caaacaaatc aagttaaatg
      301 attttagcca aatgtctggc aaaacctgtg ccagcacaac caaaaatatg aaacttttaa
      361 ccgatatatg gggctccaat gtcat
//
LOCUS       DACVWI010000470          372 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.472, whole genome shotgun sequence.
ACCESSION   DACVWI010000470 DACVWI010000000
VERSION     DACVWI010000470.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.472"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>372
                     /locus_tag="JBH85_16060"
     CDS             <1..>372
                     /locus_tag="JBH85_16060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAU0947694.1"
                     /translation="ISAFYANWNINQKRAYKDLKEVAINLSNNIDGFIEDLLQEIYAL
                     PVYGKKIVDCKSDLYPFLEHITLNNPKISGVIISDNKHNLFCSTLPNNKDLIATPIRS
                     RSIIGPYNLPLFDQPVYLIQQK"
BASE COUNT          131 a           67 c           49 g          125 t
ORIGIN      
        1 atttcagctt tttacgctaa ttggaatatt aaccaaaaaa gagcttataa agatttaaaa
       61 gaagttgcaa tcaatctcag taacaacata gatggtttta tcgaagatct acttcaggaa
      121 atctatgctt tgcctgtata tgggaaaaaa attgtcgatt gtaaatcaga tttatatcca
      181 ttcttggaac atatcacact gaataatcct aaaatctctg gtgttattat tagtgacaac
      241 aagcacaatc tattttgttc aactttacct aataataaag atcttattgc aacaccgatt
      301 cgttcacgtt ctattatagg cccctataat ttaccattat ttgaccagcc cgtttatctg
      361 atccaacaaa aa
//
LOCUS       DACVWI010000471          321 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.474, whole genome shotgun sequence.
ACCESSION   DACVWI010000471 DACVWI010000000
VERSION     DACVWI010000471.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.474"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            33..>321
                     /locus_tag="JBH85_16065"
     CDS             33..>321
                     /locus_tag="JBH85_16065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947695.1"
                     /translation="MQIIKNNALSLGYKIMKHLAELEKLKEKCLEMSDKEFNYCFNKG
                     DTSQRSINTIVARLMNKIGLKEVFFKTDKDYVDWIEDVISARKKAALSPSTP"
BASE COUNT          122 a           45 c           61 g           93 t
ORIGIN      
        1 tatgctataa ttttatctat tagtcagatt gaattcaaat tatcaaaaac aatgcactgt
       61 cactaggata taaaattatg aagcatttag ctgagttaga aaaacttaaa gaaaaatgtc
      121 tggagatgag tgataaggag tttaattatt gttttaacaa aggagatacc tcacaacgca
      181 gcattaatac aatagtagcg cgtcttatga acaaaatagg tcttaaggag gtgtttttca
      241 agacagataa agattatgtt gactggatag aagacgtaat ttccgcaaga aaaaaagcgg
      301 ctttatctcc cagcactccg g
//
LOCUS       DACVWI010000472          312 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.475, whole genome shotgun sequence.
ACCESSION   DACVWI010000472 DACVWI010000000
VERSION     DACVWI010000472.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.475"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
BASE COUNT           81 a           54 c           51 g          126 t
ORIGIN      
        1 ttgcattttt ttgcattaat tcgccataaa ttactgttat ggcggtaaat ttactcgact
       61 ttctaatttt cagcgtattt atttatgtta aattcataaa attactgtta ccgcggtaaa
      121 tttttggagg ataacaaaaa agtcattggc ctagccctgt ccctaccctc aatttccctg
      181 tttagtgcac tgggaacaca tttataatgt tggtttcatg gtgcatttta tcgccattta
      241 gtttttatta tttgcgattt gctagtaata ccagtcctga ttcatggtct attaaaagag
      301 acttttctgt ga
//
LOCUS       DACVWI010000473          306 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.476, whole genome shotgun sequence.
ACCESSION   DACVWI010000473 DACVWI010000000
VERSION     DACVWI010000473.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.476"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..>306
                     /locus_tag="JBH85_16070"
     CDS             <1..>306
                     /locus_tag="JBH85_16070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011494764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947696.1"
                     /translation="DSIESVNKYKESVISELQKIKGHALAQKKYTQLDSAIIEKAFAE
                     KLREVDALLRFGLFFKPQNIDLNQGLNVEPNQDLNIDLNQALNVEPDQELNIDPDQRI
                     "
BASE COUNT          123 a           42 c           51 g           90 t
ORIGIN      
        1 gactctatag aatcagttaa taaatacaaa gaatctgtaa tatctgaact gcaaaaaata
       61 aagggccatg cattggctca aaaaaaatat actcaactag atagtgctat tatcgaaaaa
      121 gcttttgctg agaaattacg tgaggtagat gcactgttac ggtttgggtt attttttaaa
      181 ccacaaaaca ttgatctaaa tcaaggttta aatgttgagc caaatcaaga tttaaatatt
      241 gatctaaatc aagcattaaa tgttgagcca gatcaagagt taaatattga tccagatcaa
      301 agaatt
//
LOCUS       DACVWI010000474          272 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.denovo.477, whole genome shotgun sequence.
ACCESSION   DACVWI010000474 DACVWI010000000
VERSION     DACVWI010000474.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.denovo.477"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            complement(<1..>272)
                     /locus_tag="JBH85_16075"
     CDS             complement(<1..>272)
                     /locus_tag="JBH85_16075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013101148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAU0947697.1"
                     /translation="EGATIKFSLAIANAASGLQTTDGDAITLTLESGFVVGRDAGGDA
                     VFAIAIDADTGVLSLAQYESIKHPSGGASYDEAVDLSGKINAVVTV"
BASE COUNT           64 a           82 c           61 g           65 t
ORIGIN      
        1 tcactgtcac caccgcgttg atcttgccgg acaaatccac ggcttcgtca taagaagccc
       61 cacctgatgg gtgtttaata gattcgtatt gagccaggct taagaccccg gtatcggcat
      121 caatggcaat cgcaaacacc gcatcgccgc ctgcgtctcg tccaactaca aaaccgcttt
      181 caagcgtcaa ggtgatggca tccccgtccg tggtttgtaa tccgctcgcc gcattggcta
      241 tcgctaaaga aaatttaatg gtagcccctt cg
//
LOCUS       DACVWI010000475         4822 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.guided.202, whole genome shotgun sequence.
ACCESSION   DACVWI010000475 DACVWI010000000
VERSION     DACVWI010000475.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 4822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4822
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.guided.202"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            <1..670
                     /gene="ceg23"
                     /locus_tag="JBH85_16080"
     CDS             <1..670
                     /gene="ceg23"
                     /locus_tag="JBH85_16080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Dot/Icm T4SS effector Ceg23"
                     /protein_id="HAU0947698.1"
                     /translation="VKLSYIEIMTMMKVINQPLTIYDRSTSSIVAEYVNPKVNLPDFE
                     VAIDALQGHYFLLKTEETEKELEEYERSYAQYKRDRSEILAHSDKPVSSLLVRATCPK
                     GHLDEDPFIALIESLSEINSLSQIDTNLKNENTDIPNCNFLLKVGASVVGTSSALITL
                     MGIAILSGQYDPGNSLAEEALATTVVSSIVGLGYGLYSFFSSSPKVSERDSTNGLSQK
                     LKIN"
     gene            840..1280
                     /locus_tag="JBH85_16085"
     CDS             840..1280
                     /locus_tag="JBH85_16085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HAU0947699.1"
                     /translation="MWLLERNMSAKKKSITHDRLLTEVELELMNIIWSLDKVTIKEVV
                     SHLPKERPLAYTTVATVLKVLEQKGFLECQKNSYAHVFTPIVTKSDYESTCIDHMVAN
                     VFDGEPRALVQRLLLARKLQHDDIQAIEEALKQLNAGEKQPEVM"
     gene            1280..3190
                     /locus_tag="JBH85_16090"
     CDS             1280..3190
                     /locus_tag="JBH85_16090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HAU0947700.1"
                     /translation="MLLIEIVLTIHCLLLLSSLFIGRAWLANKPSFKLKLLRFLLASC
                     IISPIIVHCVDSDQKPERQNYVSFDALQQYAKQSIFKTESSKFNHGSSSAFTSMNVNY
                     CQLLSVMFFLIVLFRSYHLLSGLGRLKLMLTEAIPYRTSGKLVIKVSHHCHVPFSILL
                     FNKAYIVLPVSIFSSAMNVRIAIAHEGQHHRNGDCSWAYFIEIIRIIFFGNPGVTQWF
                     RVLADLQELSCDEVLVGHQKISAHDYGHCLLQVAEAVSQCSLASNREIACTVGMALNK
                     ENEDCKFIIRRISMLTAYSPNASRPLLLGIVFAGFSILSPICVAYSTAGSLTSSRAKE
                     VDISHLDPRMQQIVEKQITTAVKQYHAKSGVIAIADPQTGNIIAFAESSKNKGLESWK
                     SRIFSPGSTIKPFIAAAAINSGNSSETKNYDCHSPYYIAGKTFTNYNSNVESASLADA
                     IAKSINVCLIRVSQEAGVPVIRKKLTEFGFDMNSWWQADQSDDLQLAMAALGENIPVT
                     IESLIKSYAILANKGHSFDRGNSAIISETSTNSINHMLENAVTNGTGKLAVIPGVSVA
                     GKTGTVIENNDKYLALFAGYVPADNPRYVLLVVIEEGYFSKNGKTLVSGGELAAPVFR
                     NVAMDALSSANR"
     gene            3240..4040
                     /gene="blaOXA"
                     /locus_tag="JBH85_16095"
     CDS             3240..4040
                     /gene="blaOXA"
                     /locus_tag="JBH85_16095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014845076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /protein_id="HAU0947701.1"
                     /translation="MKKIIIFLCTGLLFCVSTWAQGTCFLAKENQTVLKREGNDCDQR
                     YSPASTFKIALSLMGFDSGILKDELHPEWPYKKEYELYLNVWKYPQNPHTWIRDSCVW
                     YSQALTRQLGMKRFKGYVDAFHYGNQDVSGDRGQNNGLTHAWLSSSLSISPTEQIQFL
                     QKIIYKKLPVSQKAYIMTKNIMYIQELPGGWKLYGKTGTGRQLTKDKSQKLPLQHGWF
                     VGWIEKDERVITFAKHIADSKENNTFASFRAKNDALIQLFNLINELEK"
     gene            complement(4165..>4822)
                     /locus_tag="JBH85_16100"
     CDS             complement(4165..>4822)
                     /locus_tag="JBH85_16100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_095644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HAU0947702.1"
                     /translation="YYAFDMNQILTKLLAVDLQKNNVDQVLLAQTADNYMSQTPLLYF
                     TTKGQAYLAYQEAPETISDKDITKDGRWSYINQHGKKDNPGPFYIVWDNTSTYPAGWP
                     YQVISIQIVNKKDLAFSRFLNPLHESESIKNGHHIFNNMCSTCHSIFYKGAQGRAPDL
                     GKVTSYLTPSDISKLVKHGRGYMPPIGKNLSTEEINDLIKFLIWVNRQSSKLKCEIND
                     "
BASE COUNT         1498 a          870 c          952 g         1502 t
ORIGIN      
        1 ggttaaatta tcttatattg aaattatgac catgatgaag gtcatcaatc agccacttac
       61 aatatatgat cgttctactt cctcaattgt agccgagtat gtcaacccaa aggtcaattt
      121 acctgatttt gaagtggcta ttgatgctct tcaagggcat tattttcttt taaaaacaga
      181 ggaaacggaa aaagagttag aagaatatga aagaagttat gctcaatata aaagagatag
      241 aagtgaaatc cttgcacact ccgataaacc tgtttcttcc ttattggttc gagctacttg
      301 ccccaaaggt catttggatg aagatccttt tattgcatta attgaaagcc tttccgaaat
      361 aaacagcctt agccaaattg atactaattt gaaaaacgag aatacagata ttcccaattg
      421 caacttcctt ttaaaggtag gtgcttctgt agttggtacc tcttctgcgc taataacttt
      481 aatggggata gccatattat ctggccaata tgatcccgga aacagtctgg ctgaagaggc
      541 attagctact actgttgtat ccagtattgt gggtttaggt tatgggcttt atagcttctt
      601 tagttctagc cccaaggtat cagagcgtga ttctaccaat ggattatcgc aaaaacttaa
      661 aataaactaa cctcctgaat tagcaaatat tgtctgtaag ccgatcgtgt tgatattaga
      721 tatcaacacg attgcgcctt gagtaaactg ttctcacgtg tagagaagta ttttccccat
      781 gactatttta actctactat ttttatagta ggatactact ataaaaatag tagtagcgta
      841 tgtggttatt ggagagaaac atgtcggcaa aaaaaaaatc gataactcat gatcgacttc
      901 ttacagaagt agagcttgaa ttaatgaata ttatctggag ccttgataag gtaactatta
      961 aggaggttgt ttcacatctg cctaaggaaa ggcctttggc ttatacaacc gtggcaacag
     1021 tactaaaagt gctggaacaa aagggatttc ttgagtgtca aaaaaattcc tatgctcatg
     1081 tttttacacc tatagttaca aagtcagatt atgaaagcac ttgtattgat catatggttg
     1141 ccaatgtttt tgatggggag ccccgagcac ttgtccaaag acttttgtta gccagaaagt
     1201 tacagcatga tgacattcaa gccattgaag aagcacttaa acaattaaac gctggtgaaa
     1261 aacagccaga ggtgatgtaa tgttattaat agaaatcgta ttgactattc attgcctgct
     1321 tcttctcagt tcactattta tagggcgtgc ctggctagca aataaaccat catttaaatt
     1381 gaaattactc cgttttttat tggccagttg cattatttca ccaataatag ttcattgtgt
     1441 agactctgat caaaagcctg aacgacaaaa ctatgtatca tttgatgctt tgcaacagta
     1501 tgcaaagcaa tccatattta agacagaatc ttcaaaattt aatcatggat cgtcttctgc
     1561 ctttacatca atgaatgtga actactgtca actcttaagc gtgatgtttt ttttaatcgt
     1621 cttgtttcgt agttatcact tgttatcagg tttaggtcgc ttgaaattga tgttgactga
     1681 agcaatccca tatcgaactt ccggaaaatt agttattaag gtttctcacc actgccatgt
     1741 tcctttctca atattgctat ttaataaagc ctacatcgta ttgccagtat ccatattttc
     1801 ttctgccatg aatgtgagga ttgctattgc tcatgaaggg caacaccatc gtaatggaga
     1861 ttgttcatgg gcctatttta tcgaaatcat acgcattatc ttctttggaa acccgggtgt
     1921 aactcaatgg tttcgtgttt tagcagattt acaggaattg tcatgtgatg aagtattggt
     1981 tggacatcaa aaaatttcgg cacatgacta tggtcactgt ctattgcaag tggcagaggc
     2041 agtatcccaa tgctctctgg catctaaccg ggaaattgca tgcacggtgg gtatggcttt
     2101 gaacaaagaa aacgaagact gcaaatttat aataaggaga atttcaatgc taactgctta
     2161 ttcacccaat gcatccagac ctttgctatt agggatagtc tttgcaggat tttctatcct
     2221 gtctccaatc tgcgttgcct attcaacagc aggatctttg acgagttcca gggcaaaaga
     2281 agttgatatt tctcatttag atcccagaat gcagcagatt gtggagaaac aaattacgac
     2341 agccgtcaaa caatatcatg caaaatctgg agtaattgca atagctgatc cccaaacagg
     2401 caatatcatt gcatttgctg aatcaagtaa aaataagggg ctagagagct ggaaatcacg
     2461 tattttttca cccggatcta ctataaaacc ttttattgca gcagctgcaa tcaactctgg
     2521 gaatagctct gaaacaaaaa attatgattg tcattcacct tattacatag caggcaaaac
     2581 atttacaaat tataattcca atgttgaatc agcttcctta gcagatgcca tcgcaaaatc
     2641 tatcaatgta tgccttatca gagtttctca agaggctgga gtgccggtaa tccgtaaaaa
     2701 gctcactgaa tttggttttg acatgaacag ttggtggcaa gcggatcaaa gtgacgattt
     2761 acaactggca atggctgcac ttggagagaa tatccctgtc acaatcgaat cgctaataaa
     2821 atcttatgcc attcttgcta acaaaggaca ttcatttgac aggggaaata gtgccattat
     2881 ttcagaaaca agcactaact caataaatca tatgcttgaa aatgctgtta caaatggcac
     2941 tggaaaactc gcagttattc ctggtgtttc tgtagctggt aagacaggaa ctgtaattga
     3001 aaataatgat aaatatcttg ctttgtttgc cgggtatgtg ccagctgata atccgcgtta
     3061 tgttttatta gtcgtgattg aagagggtta tttcagtaaa aatggaaaga cattagtttc
     3121 gggaggagaa ttggccgcac cggtattccg aaatgtcgca atggatgctc tgagcagtgc
     3181 aaatcgataa ctagcttatg ggtttgcata tccatatatt caaaaatgtt gaggttgtta
     3241 tgaagaaaat aattatattt ttgtgtacag gattattatt ttgcgtctct acttgggctc
     3301 aaggcacctg ttttttagca aaagaaaatc aaactgtttt aaaacgtgag ggcaatgatt
     3361 gcgatcaacg ctattcgcca gcatcaactt ttaaaattgc ccttagcctc atgggctttg
     3421 attctggaat attaaaggat gagttgcatc ctgaatggcc atacaaaaaa gaatatgaac
     3481 tttatctgaa tgtatggaag taccctcaaa acccgcatac ctggatcaga gattcctgtg
     3541 tttggtattc acaggcatta actcgacaat tgggcatgaa acggtttaaa gggtatgtcg
     3601 acgcatttca ctacggtaat caggatgttt cgggagacag aggtcaaaat aacggcttaa
     3661 cccatgcctg gctttccagc tcactttcta tctcacccac agagcaaatt caatttctac
     3721 aaaaaataat ctacaagaaa ctaccggtga gtcaaaaagc ttatatcatg actaaaaata
     3781 tcatgtacat ccaggagttg cctggtgggt ggaagcttta tggaaaaaca ggaactggtc
     3841 ggcagttaac aaaagataaa agccaaaaat tgcctttgca acatggatgg ttcgtaggtt
     3901 ggattgagaa ggatgagcgt gtaattacct ttgcaaagca tattgcagat agtaaagaga
     3961 ataacacttt tgccagtttt agagcgaaaa atgatgctct gattcaattg tttaacctca
     4021 ttaatgagtt ggagaaataa tctaagacat tgtcggagca ggattattct gttccgatta
     4081 cccaaatctg ccaactatag tcacacacat tccaggagtt gctgctgctt gtcatcggta
     4141 gctacaaagt cctaaattat atccttagtc attaatttcg cattttagtt tggatgattg
     4201 tctgttaacc cagattaaaa atttaatgag atcattaatt tcttccgtag agaggttttt
     4261 gcctatcggt ggcatgtatc ctcgtccatg ctttacaagc ttactgatat cagaaggtgt
     4321 taagtagctc gtcactttgc ctaagtctgg tgcgcgtcct tgagcaccct tgtaaaatat
     4381 agagtggcaa gtggagcaca tattattaaa aatatgatga ccatttttta tagactctga
     4441 ttcatgcaaa ggatttaaga aacgagaaaa agcaaggtct tttttattca ctatttgaat
     4501 cgaaataacc tggtatggcc aaccggcagg gtaggtgctt gtattatccc atacaatata
     4561 gaaagggccg ggattatctt ttttaccgtg ttgattaata taactccagc gaccatcttt
     4621 ggtgatgtcc ttgtcagaaa ttgtttcggg cgcttcttga taagcaagat aggcttgacc
     4681 ttttgtcgta aaatacaaca ggggggtttg agacatatag ttatctgctg tttgagctaa
     4741 taatacctgg tctacattgt tcttttgtaa atctactgcc aacaattttg ttaaaatctg
     4801 attcatatca aaagcataat at
//
LOCUS       DACVWI010000476         1124 bp    DNA     linear   BCT 11-DEC-2020
DEFINITION  TPA_asm: Legionella pneumophila isolate DMG1500640
            SAMN04901436-rid8312923.guided.404, whole genome shotgun sequence.
ACCESSION   DACVWI010000476 DACVWI010000000
VERSION     DACVWI010000476.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN04901436
            Sequence Read Archive: SRR3439098
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales;
            Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 01-OCT-2019
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000597614.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000597614.1
            Genome Coverage       :: 50x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/02/2019 05:46:06
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 4.9
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,173
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 20 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN04901436-rid8312923.guided.404"
                     /isolate="DMG1500640"
                     /host="Homo sapiens"
                     /db_xref="taxon:446"
                     /country="Australia"
                     /collection_date="2006"
     gene            54..1052
                     /gene="aph(9)-Ia"
                     /locus_tag="JBH85_16105"
     CDS             54..1052
                     /gene="aph(9)-Ia"
                     /locus_tag="JBH85_16105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011213774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(9)-Ia"
                     /protein_id="HAU0947703.1"
                     /translation="MLRNNIPDQHLIELLKVYYGIDIHTVQLIVGGADMNAFGYKADS
                     ESNSYFVKLKYGHHDEINLSIIRLLHDSGVKEIVFPINTLEANLFQQVDHVKIIVYPF
                     IDAPNGFTKNLTEKQWKQLGKILRQIHGTSVPTSIQQRLRKETYSPKWREIVRSFYSQ
                     LGFDERDDQITTDFKAFFNQNIDSIHQLVNSSGELSKKIQPDFEKYVLCHSDVHAGNV
                     LVVDEESIYIIDWDEPMFAPKERDLMFIGSGIGNVWNKPHEINYFYEGYGKTSIDKTI
                     LSYYRHERIVEDIAVYGHDLLSRDQNAQSRLESFKHFKSMFTPNDVVEIAFATGLI"
BASE COUNT          379 a          187 c          190 g          368 t
ORIGIN      
        1 attatattat ttgctttacc attatgataa tttccaaata gtaattaact cttatgctaa
       61 gaaataacat tccggatcaa cacctcattg agcttttgaa agtctattat ggaattgata
      121 ttcatactgt acaactcatc gtgggtggtg ctgatatgaa tgcctttgga tataaagcag
      181 attcagaatc caattcttat ttcgtaaagc taaaatacgg ccatcatgat gaaattaatt
      241 tatcaatcat ccgtctctta catgactctg gagtaaagga aattgttttt cctatcaaca
      301 cactggaagc aaacttattt cagcaagtgg atcatgttaa aataattgtg tatccattta
      361 ttgatgcgcc caatggcttc accaaaaatt taacagaaaa acagtggaaa cagcttggga
      421 aaatattaag acaaatccat ggaacctctg ttcccacctc gattcaacag cgattaagaa
      481 aagaaactta ctcacctaaa tggcgtgaaa tcgttaggtc tttttacagt caacttggat
      541 ttgatgagcg tgatgatcaa ataaccactg acttcaaagc tttttttaat caaaatatcg
      601 attcaatcca tcaattagtt aattcttcag gagaactgtc taaaaaaatt caacctgatt
      661 tcgaaaaata tgtactttgt cattcagacg tacatgcagg taatgtgttg gtcgttgatg
      721 aggaatctat ttacattatt gattgggatg agcccatgtt cgcaccaaaa gaacgtgatt
      781 tgatgttcat tggcagtggt attggtaatg tatggaataa acctcatgaa atcaattatt
      841 tttatgaagg ttatggtaaa acaagcatcg ataaaaccat tttgtcttat tacagacatg
      901 agcgaattgt tgaagatata gccgtgtatg gacatgactt gctttcacgt gatcaaaatg
      961 ctcaatccag acttgaaagt tttaaacatt ttaaatcgat gtttactcca aatgatgtag
     1021 ttgaaatagc ttttgctaca ggtttgattt gatttggata aacacagaag aaaaaagatg
     1081 aaccgtttaa tctcaaccct cctcttttta atttcgtata aact
//
